BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006558
(640 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q58CX2|FAKD3_BOVIN FAST kinase domain-containing protein 3 OS=Bos taurus GN=FASTKD3
PE=2 SV=2
Length = 660
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 546 DGYTVDAVL---VDKKVAFEIDGPTHFSRNTGVPLGHTMLKRRYIAAAGWNVVSLSHQEW 602
DG+ + + V K+VA IDGP F N+ LG K+R++ G+ VV + + E
Sbjct: 575 DGFVLPFTIDEDVHKRVALCIDGPKRFCLNSKHLLGKEATKQRHLRLLGYQVVQIPYYEI 634
Query: 603 EELQGSFEQLDYLR 616
E L+ E +DYL+
Sbjct: 635 EMLKSRLELVDYLQ 648
>sp|Q6DJ55|TBRG4_XENTR Protein TBRG4 OS=Xenopus tropicalis GN=tbrg4 PE=2 SV=2
Length = 633
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 82/350 (23%), Positives = 141/350 (40%), Gaps = 82/350 (23%)
Query: 306 MDRVAEVALTKVGEFNSQNVANVAGAFASMQHSAPDLFSELAKRASDIVHTFQEQELAQV 365
++A L KV E ++ ++A +FA ++ S LF A+ + D F +L +
Sbjct: 314 FQKMASDLLPKVPEMSANDIARCVKSFAYLKWSNLPLFEAFAQASIDQSEKFTVPQLCNL 373
Query: 366 LWAFASL-YEPADPLLESLDNAFKDATQFTCCLNKALSNCNENGGVKSSGDADSEGSLSS 424
+ AF L ++P+ +F +++ L +E L
Sbjct: 374 VLAFGRLNFQPSK------------REEFYSMMHQKL---------------HAELDLLD 406
Query: 425 PVLSFNRDQLGNIAWSYAVLGQMDRIFFSDIWKT--ISRF--EEQRISEQYREDIMFASQ 480
P L L +I WS VL Q+D + S + + SRF + S YR +
Sbjct: 407 PYL------LVDIVWSLCVLRQVDSSYISKVLEPGLYSRFFTDSSPRSANYRLKLAH--- 457
Query: 481 VHLVNQCLKLEHPHLQLALSSVLEEKIASAGKTKRFNQKVTS--SFQKEVARLLVST--- 535
+N LEHP + + E I++ N+K++ S +EV R L
Sbjct: 458 ---INATALLEHP--EYTGPHLPNESISTTHAVTA-NRKLSPLQSGLQEVLRELFPVEGT 511
Query: 536 ---GLNWIREYAVDGYTV------DAVLVD-------------------KKVAFEI-DGP 566
G+N + + +DG V L+D ++ AF D P
Sbjct: 512 CRCGVNTVYGWYIDGEVVLDSDNKPLSLMDLEAPHLPHSQGKKPLPEGTRRFAFVAWDFP 571
Query: 567 THFSRNTGVPLGHTMLKRRYIAAAGWNVVSLSHQEWEELQGSFEQLDYLR 616
SR+ + LG +L RR++ AAG+ VV + + EW +L+ +++ YL+
Sbjct: 572 NFNSRSKDL-LGRFVLTRRHLQAAGFLVVEVPYYEWLDLKSEWQKSAYLK 620
>sp|Q8BSN9|FAKD3_MOUSE FAST kinase domain-containing protein 3 OS=Mus musculus GN=Fastkd3
PE=2 SV=2
Length = 661
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 546 DGYTVDAVL---VDKKVAFEIDGPTHFSRNTGVPLGHTMLKRRYIAAAGWNVVSLSHQEW 602
DG+ + + + K+VA IDGP F ++ LG K+R++ G+ VV L + E
Sbjct: 576 DGFVLPCTVDEDIHKRVALCIDGPQRFCLDSKHLLGKEATKQRHLRLLGYQVVQLPYHEL 635
Query: 603 EELQGSFEQLDYLR 616
E L E +DYL+
Sbjct: 636 ELLTSRLELVDYLQ 649
>sp|Q68FN9|FAKD3_RAT FAST kinase domain-containing protein 3 OS=Rattus norvegicus
GN=Fastkd3 PE=2 SV=2
Length = 656
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 546 DGYTVDAVL---VDKKVAFEIDGPTHFSRNTGVPLGHTMLKRRYIAAAGWNVVSLSHQEW 602
DG+ + + V +VA IDGP F + LG +K+R++ G+ VV + + E
Sbjct: 571 DGFVLPFTVDEDVHTRVALCIDGPQRFCLGSKHLLGKEAIKQRHLRLLGYQVVQVPYHEL 630
Query: 603 EELQGSFEQLDYLR 616
E L E +DYL+
Sbjct: 631 ELLTSRLELVDYLQ 644
>sp|Q14CZ7|FAKD3_HUMAN FAST kinase domain-containing protein 3 OS=Homo sapiens GN=FASTKD3
PE=2 SV=2
Length = 662
Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%)
Query: 555 VDKKVAFEIDGPTHFSRNTGVPLGHTMLKRRYIAAAGWNVVSLSHQEWEELQGSFEQLDY 614
+ K++A IDGP F N+ LG +K+R++ G+ VV + + E L+ E ++Y
Sbjct: 587 IHKRIALCIDGPKRFCSNSKHLLGKEAIKQRHLQLLGYQVVQIPYHEIGMLKSRRELVEY 646
Query: 615 LR 616
L+
Sbjct: 647 LQ 648
>sp|Q7W6L4|GLGB_BORPA 1,4-alpha-glucan branching enzyme GlgB OS=Bordetella parapertussis
(strain 12822 / ATCC BAA-587 / NCTC 13253) GN=glgB PE=3
SV=1
Length = 731
Score = 39.3 bits (90), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 30/54 (55%)
Query: 500 SSVLEEKIASAGKTKRFNQKVTSSFQKEVARLLVSTGLNWIREYAVDGYTVDAV 553
+ + E G+ +N + + ++EV L+++ ++W+R Y VDG VDAV
Sbjct: 361 TPLYEHADPHEGRHPDWNTLIYNYGRREVRAFLIASAIHWLRHYHVDGLRVDAV 414
>sp|Q7VYK0|GLGB_BORPE 1,4-alpha-glucan branching enzyme GlgB OS=Bordetella pertussis
(strain Tohama I / ATCC BAA-589 / NCTC 13251) GN=glgB
PE=3 SV=1
Length = 731
Score = 39.3 bits (90), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 30/54 (55%)
Query: 500 SSVLEEKIASAGKTKRFNQKVTSSFQKEVARLLVSTGLNWIREYAVDGYTVDAV 553
+ + E G+ +N + + ++EV L+++ ++W+R Y VDG VDAV
Sbjct: 361 TPLYEHADPREGRHPDWNTLIYNYGRREVRTFLIASAIHWLRHYHVDGLRVDAV 414
>sp|Q7WII7|GLGB_BORBR 1,4-alpha-glucan branching enzyme GlgB OS=Bordetella bronchiseptica
(strain ATCC BAA-588 / NCTC 13252 / RB50) GN=glgB PE=3
SV=1
Length = 731
Score = 39.3 bits (90), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 30/54 (55%)
Query: 500 SSVLEEKIASAGKTKRFNQKVTSSFQKEVARLLVSTGLNWIREYAVDGYTVDAV 553
+ + E G+ +N + + ++EV L+++ ++W+R Y VDG VDAV
Sbjct: 361 TPLYEHADPREGRHPDWNTLIYNYGRREVRAFLIASAIHWLRHYHVDGLRVDAV 414
>sp|Q7YS91|TBRG4_PIG Protein TBRG4 OS=Sus scrofa GN=TBRG4 PE=2 SV=2
Length = 632
Score = 38.5 bits (88), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 84/370 (22%), Positives = 139/370 (37%), Gaps = 89/370 (24%)
Query: 288 NIAWALSKIGGELLYLSEMDRVAEVALTKVGEFNSQNVANVAGAFASMQHSAPDLFSELA 347
++A+A K+G R+A L S VA +FA ++ + LF A
Sbjct: 298 DLAYAYGKLGFH--QTQVFQRLAADLLPHTPSLTSSEVARCTKSFAFLKWLSLPLFEAFA 355
Query: 348 KRASDIVHTFQEQELAQVLWAFASL-YEPADPLLESLDNAFKDATQFTCCLNKALSNCNE 406
+ D + L +L AFA + + P E D F S +E
Sbjct: 356 QHVLDRAQSIALPHLCNMLLAFARVNFRP-----EREDQFF--------------SLVHE 396
Query: 407 NGGVKSSGDADSEGSLSSPVLSFNRDQLGNIAWSYAVLGQMDRIFFSDIWKTISRFEEQR 466
G + +G P L + + WS VL Q + + Q
Sbjct: 397 KLGSQLAG--------LEPALQVD------VVWSLCVLQQAREAELQAVLR--PELHGQF 440
Query: 467 ISEQYREDIMFASQVHLVNQCLKLEHP-----HLQLALSSVLEEKIASAGKTKRFNQKVT 521
+ ++ +D ++ +N +LEHP HL SS L + ++ ++KVT
Sbjct: 441 LGDKSPKDQSTFQKLLHINATAQLEHPEYTGPHLP---SSALVPRPSA------LDKKVT 491
Query: 522 SSFQKEV-------------ARLLVSTGLNWI--REYAVDGYTVDAVLVD---------- 556
QKE+ LV+T WI E +D + L D
Sbjct: 492 P-LQKELQETLKGLLGSADKGSFLVATRYGWILDAEVLLDADSQLLPLRDFVAPHLAQPS 550
Query: 557 ---------KKVAFEI-DGPTHFSRNTGVPLGHTMLKRRYIAAAGWNVVSLSHQEWEELQ 606
K++AF + P SR+ + LG +L RR++ AAG+ +V + + EW EL+
Sbjct: 551 GSQPLPAGAKRLAFLCWEFPNFNSRSKDL-LGRFVLARRHLLAAGFLLVDVPYYEWLELK 609
Query: 607 GSFEQLDYLR 616
+++ YL+
Sbjct: 610 SEWQKSAYLK 619
>sp|Q13S07|GLGB_BURXL 1,4-alpha-glucan branching enzyme GlgB OS=Burkholderia xenovorans
(strain LB400) GN=glgB PE=3 SV=1
Length = 736
Score = 38.5 bits (88), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%)
Query: 500 SSVLEEKIASAGKTKRFNQKVTSSFQKEVARLLVSTGLNWIREYAVDGYTVDAV 553
+ + E G + +N + + + EV+ L+++GL W++ Y VDG VDAV
Sbjct: 364 TPLYEHADPREGYHQDWNTMIYNLGRNEVSAFLIASGLAWLKRYHVDGLRVDAV 417
>sp|Q6GQ66|FAKD1_XENLA FAST kinase domain-containing protein 1 OS=Xenopus laevis
GN=fastkd1 PE=2 SV=1
Length = 832
Score = 38.5 bits (88), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 557 KKVAFEIDGPTHFSRNTGVPLGHTMLKRRYIAAAGWNVVSLSHQEWEELQGSFEQ--LDY 614
++VA E FS+N+ G M+K+R++ G++V+ +S EW ++ S + +DY
Sbjct: 763 QRVAIEFLDSKAFSKNSSNIKGEYMMKKRHLEILGYHVLQISSLEWNSMELSTKDAWMDY 822
Query: 615 LR 616
LR
Sbjct: 823 LR 824
>sp|Q3SZK4|TBRG4_BOVIN Protein TBRG4 OS=Bos taurus GN=TBRG4 PE=2 SV=1
Length = 632
Score = 38.5 bits (88), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 557 KKVAF-EIDGPTHFSRNTGVPLGHTMLKRRYIAAAGWNVVSLSHQEWEELQGSFEQLDYL 615
K++AF + P SR+ + LG ML RR++ AAG+ +V + + EW EL+ +++ YL
Sbjct: 560 KRLAFLRWEFPNFNSRSKDL-LGRFMLARRHLLAAGFLLVDVPYYEWMELKSEWQKSAYL 618
Query: 616 RVILKDYIGGE 626
+ ++ + E
Sbjct: 619 KDKMRKAVAEE 629
>sp|Q5M9G9|TBRG4_RAT Protein TBRG4 OS=Rattus norvegicus GN=Tbrg4 PE=2 SV=1
Length = 629
Score = 37.7 bits (86), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Query: 557 KKVAF-EIDGPTHFSRNTGVPLGHTMLKRRYIAAAGWNVVSLSHQEWEELQGSFEQLDYL 615
K++AF + P SR+ + LG +L RR++ AAG+ VV + + EW +L+ +++ YL
Sbjct: 557 KRIAFLRWEFPNFNSRSKDL-LGRFVLARRHVLAAGFLVVDVPYYEWLDLKSEWQKTAYL 615
Query: 616 R 616
+
Sbjct: 616 K 616
>sp|Q91YM4|TBRG4_MOUSE Protein TBRG4 OS=Mus musculus GN=Tbrg4 PE=2 SV=1
Length = 630
Score = 37.0 bits (84), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Query: 557 KKVAF-EIDGPTHFSRNTGVPLGHTMLKRRYIAAAGWNVVSLSHQEWEELQGSFEQLDYL 615
K++AF + P SR+ + LG +L RR++ AAG+ VV + + EW +L+ +++ YL
Sbjct: 558 KRIAFLRWEFPNFNSRSKDL-LGRFVLARRHVLAAGFLVVDVPYYEWLDLKSEWQKSAYL 616
Query: 616 R 616
+
Sbjct: 617 K 617
>sp|Q28DE0|FAKD1_XENTR FAST kinase domain-containing protein 1 OS=Xenopus tropicalis
GN=fastkd1 PE=2 SV=1
Length = 832
Score = 36.6 bits (83), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 557 KKVAFEIDGPTHFSRNTGVPLGHTMLKRRYIAAAGWNVVSLSHQEWEELQGSFEQ--LDY 614
++VA E FS+N+ G ++K+R++ G++VV ++ EW ++ S + +DY
Sbjct: 763 QRVAIEFLDSKAFSKNSSNIKGEYVMKKRHLEILGYHVVQIASFEWNSMELSTKDAWIDY 822
Query: 615 LR 616
LR
Sbjct: 823 LR 824
>sp|Q969Z0|TBRG4_HUMAN Protein TBRG4 OS=Homo sapiens GN=TBRG4 PE=1 SV=1
Length = 631
Score = 36.2 bits (82), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 557 KKVAF-EIDGPTHFSRNTGVPLGHTMLKRRYIAAAGWNVVSLSHQEWEELQGSFEQLDYL 615
K++AF + P SR+ + LG +L RR+I AAG+ +V + EW EL+ +++ YL
Sbjct: 559 KRLAFLRWEFPNFNSRSKDL-LGRFVLARRHIVAAGFLIVDVPFYEWLELKSEWQKGAYL 617
Query: 616 R 616
+
Sbjct: 618 K 618
>sp|O33840|PULA_THEMA Pullulanase OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM
3109 / JCM 10099) GN=pulA PE=1 SV=2
Length = 843
Score = 34.3 bits (77), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 520 VTSSFQKEVARLLVSTGLNWIREYAVDGYTVDAV-LVDKKVAFEIDGPTH 568
V +S + + + +V T W++EY +DG+ D + L+DKK E++ H
Sbjct: 504 VIASERPMMRKFIVDTVTYWVKEYHIDGFRFDQMGLIDKKTMLEVERALH 553
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.130 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 230,626,324
Number of Sequences: 539616
Number of extensions: 9781664
Number of successful extensions: 51958
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 334
Number of HSP's that attempted gapping in prelim test: 49608
Number of HSP's gapped (non-prelim): 1770
length of query: 640
length of database: 191,569,459
effective HSP length: 124
effective length of query: 516
effective length of database: 124,657,075
effective search space: 64323050700
effective search space used: 64323050700
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)