Query 006558
Match_columns 640
No_of_seqs 270 out of 894
Neff 6.5
Searched_HMMs 46136
Date Thu Mar 28 11:09:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006558.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006558hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00479 RAP Superfamily; Prov 100.0 3.1E-40 6.6E-45 348.6 27.5 339 231-625 57-398 (435)
2 PF08373 RAP: RAP domain; Int 99.8 7.7E-19 1.7E-23 140.4 5.2 58 561-618 1-58 (58)
3 PRK09169 hypothetical protein; 99.7 1.4E-15 3E-20 185.9 18.5 178 230-449 326-516 (2316)
4 PRK09169 hypothetical protein; 99.7 3E-15 6.4E-20 183.0 21.3 180 230-448 284-473 (2316)
5 PTZ00479 RAP Superfamily; Prov 99.4 1.6E-12 3.5E-17 138.9 16.3 147 276-459 53-199 (435)
6 PF04480 DUF559: Protein of un 98.7 9.5E-08 2E-12 86.2 10.2 93 520-619 12-107 (108)
7 cd01038 Endonuclease_DUF559 Do 98.7 1.6E-07 3.5E-12 84.6 10.4 80 519-603 11-93 (108)
8 PRK14707 hypothetical protein; 98.6 3.1E-07 6.7E-12 112.3 15.1 177 230-448 662-851 (2710)
9 PRK14707 hypothetical protein; 98.6 1.1E-06 2.3E-11 107.8 18.2 135 231-375 705-850 (2710)
10 PRK09767 hypothetical protein; 98.5 1E-06 2.2E-11 80.6 10.3 94 521-621 16-112 (117)
11 cd00221 Vsr Very Short Patch R 98.4 8.8E-07 1.9E-11 80.8 6.7 83 520-602 16-115 (115)
12 COG2852 Very-short-patch-repai 98.2 2.6E-06 5.5E-11 77.4 6.0 63 536-603 44-106 (129)
13 PF06743 FAST_1: FAST kinase-l 98.0 1.2E-05 2.6E-10 67.1 6.6 59 325-383 1-62 (71)
14 TIGR00632 vsr DNA mismatch end 98.0 1.4E-05 3E-10 72.8 7.1 75 524-598 23-114 (117)
15 PF06743 FAST_1: FAST kinase-l 97.9 4.4E-05 9.5E-10 63.7 7.4 62 286-347 1-63 (71)
16 cd01037 Restriction_endonuclea 96.5 0.011 2.4E-07 48.0 7.4 73 526-598 4-79 (80)
17 PF08368 FAST_2: FAST kinase-l 96.3 0.012 2.6E-07 51.6 6.7 74 480-554 5-83 (93)
18 KOG0166 Karyopherin (importin) 93.2 6.3 0.00014 44.9 18.8 164 199-382 102-274 (514)
19 PF10881 DUF2726: Protein of u 93.1 0.15 3.2E-06 47.0 4.9 55 546-603 54-113 (126)
20 COG3727 Vsr DNA G:T-mismatch r 92.9 0.43 9.4E-06 44.3 7.5 81 521-602 21-119 (150)
21 PF07671 DUF1601: Protein of u 91.9 0.07 1.5E-06 38.8 0.9 28 263-290 10-37 (37)
22 PF03852 Vsr: DNA mismatch end 87.9 0.59 1.3E-05 39.4 3.4 47 522-569 21-68 (75)
23 PF07671 DUF1601: Protein of u 87.6 0.28 6E-06 35.8 1.1 18 348-365 19-36 (37)
24 KOG2422 Uncharacterized conser 69.8 1.8 3.8E-05 49.4 0.6 33 340-372 339-374 (665)
25 PHA00159 endonuclease I 68.1 7.6 0.00017 36.5 4.3 47 520-567 15-70 (148)
26 KOG0166 Karyopherin (importin) 64.1 1.4E+02 0.003 34.4 14.0 144 280-455 121-275 (514)
27 PF05367 Phage_endo_I: Phage e 57.7 18 0.0004 34.2 4.8 60 520-589 15-83 (149)
28 KOG2422 Uncharacterized conser 55.7 5 0.00011 45.9 0.9 12 283-294 304-315 (665)
29 COG5064 SRP1 Karyopherin (impo 54.1 3E+02 0.0066 30.2 13.6 179 178-383 86-281 (526)
30 cd00020 ARM Armadillo/beta-cat 47.1 1.8E+02 0.004 24.8 9.6 96 277-372 15-118 (120)
31 PF13764 E3_UbLigase_R4: E3 ub 38.7 2.9E+02 0.0063 33.7 12.0 173 177-354 86-275 (802)
32 PF04147 Nop14: Nop14-like fam 28.7 2.9E+02 0.0062 34.0 10.0 33 205-250 424-456 (840)
33 TIGR00990 3a0801s09 mitochondr 25.6 2.7E+02 0.0059 32.4 8.9 34 204-248 171-204 (615)
34 PF07862 Nif11: Nitrogen fixat 24.5 2.3E+02 0.005 21.4 5.4 33 177-218 6-38 (49)
35 PF08597 eIF3_subunit: Transla 23.9 43 0.00093 34.6 1.6 28 86-113 175-202 (245)
36 PF06685 DUF1186: Protein of u 23.6 8.5E+02 0.018 25.4 17.4 184 176-389 2-196 (249)
37 PF07771 TSGP1: Tick salivary 22.5 22 0.00049 32.8 -0.7 19 40-58 47-65 (120)
38 PF13513 HEAT_EZ: HEAT-like re 22.4 3.1E+02 0.0067 20.7 5.9 45 327-371 6-54 (55)
39 TIGR00869 sec62 protein transl 20.8 49 0.0011 34.1 1.2 13 12-24 60-72 (232)
40 PF03343 SART-1: SART-1 family 20.1 35 0.00075 40.1 0.0 17 102-118 279-295 (613)
No 1
>PTZ00479 RAP Superfamily; Provisional
Probab=100.00 E-value=3.1e-40 Score=348.63 Aligned_cols=339 Identities=16% Similarity=0.189 Sum_probs=259.7
Q ss_pred CCChhhHHHHHHHHHhccccchhhhhhhhhhhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhCCCcCCHHHHHHHH
Q 006558 231 PLSPLNIATALHRIAKNMEKVSMMTTHRLAFTRQREMSMLVAIAMTALPECSAQGISNIAWALSKIGGELLYLSEMDRVA 310 (640)
Q Consensus 231 ~fn~vn~aTALhRLAk~~~~~~~~~~rr~~~ar~~~~~~L~~~a~~~l~~~~pq~LsnilWAlAkLg~~~~~~~el~aLa 310 (640)
-+++.-+|.+...-|.+-.. .-.........+...++.++||+|++|+|+|||+++.+. ..+.++.
T Consensus 57 ~md~~~is~~vqkaat~rkh------------D~~Lw~~f~~Rilel~dtL~Pqqig~Ilyg~gKsr~~~~--efy~~~~ 122 (435)
T PTZ00479 57 LMDGWYLSACVQKAATLRKH------------DLELWHGFTNRLLELSDTLTPQQIGYIFYGYGKSRFLNP--EFYEKML 122 (435)
T ss_pred hcCHHHHHHHHHHHHhhhhc------------hHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhccCH--HHHHHHH
Confidence 45555566555555543111 123566777788888999999999999999999998643 2468888
Q ss_pred HHHHhhhCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHhCCCCChhHHHHHHHHhhhc
Q 006558 311 EVALTKVGEFNSQNVANVAGAFASMQHSAPDLFSELAKRASDIVHTFQEQELAQVLWAFASLYEPADPLLESLDNAFKDA 390 (640)
Q Consensus 311 ~~a~~~i~~fspQ~LAnilwAlAkL~~~~~~L~~aLa~~v~~~l~~f~~QeLsniLWAfA~L~~~~~~Ll~aL~~~~~~~ 390 (640)
+.+...+++|++++|++++|||++|+++++.|+.+++.++..+.++|.++++++++.|||+|++.+..+.+.+...+.
T Consensus 123 ~~v~~~L~~fssh~L~~i~wALsrL~Ird~~fL~~~ak~vl~r~~~~r~~dl~k~~nslakLg~~~~~l~k~l~~~~~-- 200 (435)
T PTZ00479 123 KFVQPLLPNFYSHSLMCIAWALNRVQIRDEAFLSRFAKEVGEKFDDIRTTDLIKICNSLAKLGGYTNNLKKFLSEKMV-- 200 (435)
T ss_pred HHHHHHhhhcCccHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhccccCchhHHHHHHHHHHhcCCcHHHHHHHHHHHH--
Confidence 999999999999999999999999999999999999999999999999999999999999999998877766554332
Q ss_pred chhHHHHHHHhhhcccCCCCCCCCCccchhhhcccCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhHHHhhhHH
Q 006558 391 TQFTCCLNKALSNCNENGGVKSSGDADSEGSLSSPVLSFNRDQLGNIAWSYAVLGQMDRIFFSDIWKTISRFEEQRISEQ 470 (640)
Q Consensus 391 ~~f~~~L~~lvs~~~~~~~~~~~~~Ld~~~~~~~~l~~F~pqeLaniLWSLAvLg~~d~~lf~~L~~~L~~~~~~~ls~~ 470 (640)
..++.|+++++-|.+=..+.++.++.+.-..++.. +..-.+ -.
T Consensus 201 ---------------------------------~rle~~~~~~~r~~i~~it~~~Lf~d~m~~~~ler---~s~~~~-c~ 243 (435)
T PTZ00479 201 ---------------------------------EKLESLFAQDFRNVVNDVTLIHLYDDNTQIYILER---FSKMFI-CA 243 (435)
T ss_pred ---------------------------------HHHhhhcccchhhhcChhhHHHHhhhHHHHHHHHH---ccccce-ec
Confidence 23456677777777777777777776643333322 111000 00
Q ss_pred HHHhhHHHHHHHHHHHHhhhhCCccccccchHHHHHHHHhcccccc-CCCCCCHHHHHHHHHHHhcCCCceeeeeeccee
Q 006558 471 YREDIMFASQVHLVNQCLKLEHPHLQLALSSVLEEKIASAGKTKRF-NQKVTSSFQKEVARLLVSTGLNWIREYAVDGYT 549 (640)
Q Consensus 471 ~~~dlm~~~QL~~~~~~l~lE~P~~~l~l~~~L~~~l~~a~~~~~~-~~~~~S~lq~eV~~~L~~lG~~~~~E~~~~G~~ 549 (640)
|... ..|+|.....+.+.+|+....++......+.+......- ....+|.+|++|+++|..||+.|+.|+..+||.
T Consensus 244 r~~h---l~~~y~~aly~rl~~p~v~~~Ls~~~r~Fl~r~s~r~i~~~~~~~S~~h~dVS~~L~~mGI~H~ne~~~Gpf~ 320 (435)
T PTZ00479 244 RPQH---LQQAYKSAVAVRVLLPHVWFQLSKSVKSFYTRLSMRRIPQSLRKPSPFQWDVSNCLAKLGISHRNTFYWGCFW 320 (435)
T ss_pred ccHH---HHHHHhhhhhheeechHHHHhcCHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHHhCCchhhheeecCeE
Confidence 1111 113333334566778887666777666666655321111 125799999999999999999999999999999
Q ss_pred eeeecC-CccEEEEEcCCCCCccCCCCCcchhHHHHHHHHHcCCEEEEEchhHHhhhCCh-HHHHHHHHHHHHHHhhc
Q 006558 550 VDAVLV-DKKVAFEIDGPTHFSRNTGVPLGHTMLKRRYIAAAGWNVVSLSHQEWEELQGS-FEQLDYLRVILKDYIGG 625 (640)
Q Consensus 550 VDi~l~-~~rVAIEVDGP~Hf~~ns~~~lG~t~LK~RlL~~~Gw~VV~VPy~EW~~L~~~-~er~~YLr~kL~~~l~~ 625 (640)
|||+.+ +++++||||||+||++|+...+|.+.+|+|+|..+||+|++|||+||.+|.++ ++|++||++.+...-.+
T Consensus 321 iDI~~~~~k~~~IeVdGPshFY~ns~~~Ta~skLkHriL~~lGw~V~~Ipy~eW~~L~~d~e~K~eYLrk~~e~~~~~ 398 (435)
T PTZ00479 321 IDIGEIDDKRNCWFIDGPSCFYTSTNEYTESVKLQHRILSNLGWNIRRVVWIDWVQLGDDTEAKVQYVRKLRESEPLG 398 (435)
T ss_pred EEEeccCCcceEEEEcCcchhhccchhhHHHHHHHHHHHHHCCCeEEEeeHHHHhhhCcCHHHHHHHHHHHhhcCCCC
Confidence 999965 67899999999999999999999999999999999999999999999999876 68999999999865433
No 2
>PF08373 RAP: RAP domain; InterPro: IPR013584 The ~60-residue RAP (an acronym for RNA-binding domain abundant in Apicomplexans) domain is found in various proteins in eukaryotes. It is particularly abundant in apicomplexans and might mediate a range of cellular functions through its potential interactions with RNA []. The RAP domain consists of multiple blocks of charged and aromatics residues and is predicted to be composed of alpha helical and beta strand structures. Two predicted loop regions that are dominated by glycine and tryptophan residues are found before and after the central beta sheet []. Some proteins known to contain a RAP domain are listed below: Human hypothetical protein MGC5297, Mammalian FAST kinase domain-containing proteins (FASTKDs), Chlamydomonas reinhardtii chloroplastic trans-splicing factor Raa3.
Probab=99.75 E-value=7.7e-19 Score=140.36 Aligned_cols=58 Identities=38% Similarity=0.723 Sum_probs=56.0
Q ss_pred EEEcCCCCCccCCCCCcchhHHHHHHHHHcCCEEEEEchhHHhhhCChHHHHHHHHHH
Q 006558 561 FEIDGPTHFSRNTGVPLGHTMLKRRYIAAAGWNVVSLSHQEWEELQGSFEQLDYLRVI 618 (640)
Q Consensus 561 IEVDGP~Hf~~ns~~~lG~t~LK~RlL~~~Gw~VV~VPy~EW~~L~~~~er~~YLr~k 618 (640)
||||||+||++|+..++|+|.||+|+|+++||+||+|||+||..+.+.++|++||+++
T Consensus 1 IevdGp~hy~~~~~~~~g~t~lk~r~L~~~G~~Vi~Ip~~eW~~l~~~~~k~~YL~~~ 58 (58)
T PF08373_consen 1 IEVDGPSHYYRNSNNLTGSTKLKHRHLKALGYKVISIPYYEWNKLKSREEKIEYLKKK 58 (58)
T ss_pred CEECCcHHhhCCCCccchHHHHHHHHHHHCCCEEEEecHHHHHhcCCHHHHHHHHhcC
Confidence 7999999999999999999999999999999999999999999998899999999874
No 3
>PRK09169 hypothetical protein; Validated
Probab=99.66 E-value=1.4e-15 Score=185.88 Aligned_cols=178 Identities=21% Similarity=0.152 Sum_probs=122.7
Q ss_pred CCCChhhHHHHHHHHHhccccchhhhhhhhhhhhhHHHHHHHHHHH---hhCCCCCHHHHHHHHHHHHHhCCCcCCHHHH
Q 006558 230 SPLSPLNIATALHRIAKNMEKVSMMTTHRLAFTRQREMSMLVAIAM---TALPECSAQGISNIAWALSKIGGELLYLSEM 306 (640)
Q Consensus 230 s~fn~vn~aTALhRLAk~~~~~~~~~~rr~~~ar~~~~~~L~~~a~---~~l~~~~pq~LsnilWAlAkLg~~~~~~~el 306 (640)
..||++++|++|+-|+|+.... ..+ .....|.+.+. .....|+||+|||++|||+|++....+....
T Consensus 326 ~~~~aQ~vAN~LNALSKWp~~~---------~c~-~Aa~~LA~rL~~~~~l~~~~npQelANaLnALSKwp~~~~cr~AA 395 (2316)
T PRK09169 326 QAMNAQAVANALNALSKWPDEE---------ACR-AAAEALAARLARDAGLRRALNAQELANALNALSKWPDEEACRAAA 395 (2316)
T ss_pred hhCCHHHHHHHHHHHhcCCCcH---------HHH-HHHHHHHHHHHhChhhhhhCCHHHHHHHHHHHHcCCCchHHHHHH
Confidence 3699999999999999985432 011 12223333322 3357999999999999999998654332234
Q ss_pred HHHHHHHHh---hhCCCCHHHHHHHHHHHHHCCCCCH--HHHHHHHHHHhhh---hcCCCHHHHHHHHHHHHhCCCCChh
Q 006558 307 DRVAEVALT---KVGEFNSQNVANVAGAFASMQHSAP--DLFSELAKRASDI---VHTFQEQELAQVLWAFASLYEPADP 378 (640)
Q Consensus 307 ~aLa~~a~~---~i~~fspQ~LAnilwAlAkL~~~~~--~L~~aLa~~v~~~---l~~f~~QeLsniLWAfA~L~~~~~~ 378 (640)
++|+.++.. ....|++|+|||++|||+|+..... .....|+.++... ...|++|+|+|+||||+++...+.-
T Consensus 396 ~aLA~rL~~~~~l~~~fnaQ~vANaLnALsKWp~~~~c~~aa~aLA~rl~~~a~lr~~fn~QeLaN~LnALsKWp~~~~c 475 (2316)
T PRK09169 396 EALAARLARDAGLRAALNAQGVANALNALSKWPGAEACRQAALALAARLAADARLRNALSAQELANALNALSKWPDEAAC 475 (2316)
T ss_pred HHHHHHHHhchhhhhhcChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhchhhhhhCCHHHHHHHHHHHhcCCchHHH
Confidence 566665543 2467999999999999999987653 5666777766543 3889999999999999998653210
Q ss_pred --HHHHHHHHhhhcchhHHHHHHHhhhcccCCCCCCCCCccchhhhcccCCCCCHHHHHHHHHHHHhcCCCCH
Q 006558 379 --LLESLDNAFKDATQFTCCLNKALSNCNENGGVKSSGDADSEGSLSSPVLSFNRDQLGNIAWSYAVLGQMDR 449 (640)
Q Consensus 379 --Ll~aL~~~~~~~~~f~~~L~~lvs~~~~~~~~~~~~~Ld~~~~~~~~l~~F~pqeLaniLWSLAvLg~~d~ 449 (640)
....|+.++... ......|++|+|+|++|+|++++..+.
T Consensus 476 ~~aa~~LA~rl~~~--------------------------------~~l~~af~~Q~lAN~LnALsKwp~~~~ 516 (2316)
T PRK09169 476 RRAAEALAARLAGD--------------------------------AELRQALDAQGLANALNALSKWPDSDA 516 (2316)
T ss_pred HHHHHHHHHHHhcC--------------------------------hhhhhhcChHHHHHHHHHHhcCCccHH
Confidence 111111111100 122467999999999999999987664
No 4
>PRK09169 hypothetical protein; Validated
Probab=99.66 E-value=3e-15 Score=183.02 Aligned_cols=180 Identities=18% Similarity=0.124 Sum_probs=123.4
Q ss_pred CCCChhhHHHHHHHHHhccccchhhhhhhhhhhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhCCCcCCHHHHHHH
Q 006558 230 SPLSPLNIATALHRIAKNMEKVSMMTTHRLAFTRQREMSMLVAIAMTALPECSAQGISNIAWALSKIGGELLYLSEMDRV 309 (640)
Q Consensus 230 s~fn~vn~aTALhRLAk~~~~~~~~~~rr~~~ar~~~~~~L~~~a~~~l~~~~pq~LsnilWAlAkLg~~~~~~~el~aL 309 (640)
..||++++|++|+-|+|+..... . | .+-...-.+|..... ....|+||+|||++|||+|++...........|
T Consensus 284 ~~~~~Q~vAN~LNALSKwp~~~~---c-r--~aa~~LA~rL~~~~~-l~~~~~aQ~vAN~LNALSKWp~~~~c~~Aa~~L 356 (2316)
T PRK09169 284 LALDPQGVANALNALSKWPDTEA---C-R--QAAEALAERLAQERG-LLQAMNAQAVANALNALSKWPDEEACRAAAEAL 356 (2316)
T ss_pred hhcCHHHHHHHHHHHHhCCCchH---H-H--HHHHHHHHHHHhChh-hhhhCCHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 36999999999999999865420 0 0 011112233433333 678999999999999999998655433334566
Q ss_pred HHHHH---hhhCCCCHHHHHHHHHHHHHCCCCCH--HHHHHHHHHHhhh---hcCCCHHHHHHHHHHHHhCCCCCh--hH
Q 006558 310 AEVAL---TKVGEFNSQNVANVAGAFASMQHSAP--DLFSELAKRASDI---VHTFQEQELAQVLWAFASLYEPAD--PL 379 (640)
Q Consensus 310 a~~a~---~~i~~fspQ~LAnilwAlAkL~~~~~--~L~~aLa~~v~~~---l~~f~~QeLsniLWAfA~L~~~~~--~L 379 (640)
+.++. .....|+||+|||++|||+|+..... ..-.+|+.++... .+.|++|+|+|+||||+|+...+. ..
T Consensus 357 A~rL~~~~~l~~~~npQelANaLnALSKwp~~~~cr~AA~aLA~rL~~~~~l~~~fnaQ~vANaLnALsKWp~~~~c~~a 436 (2316)
T PRK09169 357 AARLARDAGLRRALNAQELANALNALSKWPDEEACRAAAEALAARLARDAGLRAALNAQGVANALNALSKWPGAEACRQA 436 (2316)
T ss_pred HHHHHhChhhhhhCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHhchhhhhhcChHHHHHHHHHHhcCCCchHHHHH
Confidence 66654 34479999999999999999987643 3455666665542 466999999999999999986542 12
Q ss_pred HHHHHHHhhhcchhHHHHHHHhhhcccCCCCCCCCCccchhhhcccCCCCCHHHHHHHHHHHHhcCCCC
Q 006558 380 LESLDNAFKDATQFTCCLNKALSNCNENGGVKSSGDADSEGSLSSPVLSFNRDQLGNIAWSYAVLGQMD 448 (640)
Q Consensus 380 l~aL~~~~~~~~~f~~~L~~lvs~~~~~~~~~~~~~Ld~~~~~~~~l~~F~pqeLaniLWSLAvLg~~d 448 (640)
..+|...+... ......|++|+|+|+||+|++++..+
T Consensus 437 a~aLA~rl~~~--------------------------------a~lr~~fn~QeLaN~LnALsKWp~~~ 473 (2316)
T PRK09169 437 ALALAARLAAD--------------------------------ARLRNALSAQELANALNALSKWPDEA 473 (2316)
T ss_pred HHHHHHHHhhc--------------------------------hhhhhhCCHHHHHHHHHHHhcCCchH
Confidence 22222211110 01125799999999999999998644
No 5
>PTZ00479 RAP Superfamily; Provisional
Probab=99.44 E-value=1.6e-12 Score=138.87 Aligned_cols=147 Identities=12% Similarity=0.133 Sum_probs=129.1
Q ss_pred hhCCCCCHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHhhhhc
Q 006558 276 TALPECSAQGISNIAWALSKIGGELLYLSEMDRVAEVALTKVGEFNSQNVANVAGAFASMQHSAPDLFSELAKRASDIVH 355 (640)
Q Consensus 276 ~~l~~~~pq~LsnilWAlAkLg~~~~~~~el~aLa~~a~~~i~~fspQ~LAnilwAlAkL~~~~~~L~~aLa~~v~~~l~ 355 (640)
...+-|+++.||+++=--|.+.-++.. .+..+..+++..++..+||++++|+||||++++.+++||.++...+...++
T Consensus 53 ~~~~~md~~~is~~vqkaat~rkhD~~--Lw~~f~~Rilel~dtL~Pqqig~Ilyg~gKsr~~~~efy~~~~~~v~~~L~ 130 (435)
T PTZ00479 53 SPPDLMDGWYLSACVQKAATLRKHDLE--LWHGFTNRLLELSDTLTPQQIGYIFYGYGKSRFLNPEFYEKMLKFVQPLLP 130 (435)
T ss_pred cChhhcCHHHHHHHHHHHHhhhhchHH--HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhh
Confidence 345679999999999999999977653 468899999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhCCCCChhHHHHHHHHhhhcchhHHHHHHHhhhcccCCCCCCCCCccchhhhcccCCCCCHHHHH
Q 006558 356 TFQEQELAQVLWAFASLYEPADPLLESLDNAFKDATQFTCCLNKALSNCNENGGVKSSGDADSEGSLSSPVLSFNRDQLG 435 (640)
Q Consensus 356 ~f~~QeLsniLWAfA~L~~~~~~Ll~aL~~~~~~~~~f~~~L~~lvs~~~~~~~~~~~~~Ld~~~~~~~~l~~F~pqeLa 435 (640)
+|++++|++++|||+++++.+..|+.+++..+. .+...|.+++++
T Consensus 131 ~fssh~L~~i~wALsrL~Ird~~fL~~~ak~vl-----------------------------------~r~~~~r~~dl~ 175 (435)
T PTZ00479 131 NFYSHSLMCIAWALNRVQIRDEAFLSRFAKEVG-----------------------------------EKFDDIRTTDLI 175 (435)
T ss_pred hcCccHHHHHHHHHHhcCCCcHHHHHHHHHHHH-----------------------------------hhccccCchhHH
Confidence 999999999999999999999999987765332 235568999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHH
Q 006558 436 NIAWSYAVLGQMDRIFFSDIWKTI 459 (640)
Q Consensus 436 niLWSLAvLg~~d~~lf~~L~~~L 459 (640)
+++-|+|+||..+..+...+-..+
T Consensus 176 k~~nslakLg~~~~~l~k~l~~~~ 199 (435)
T PTZ00479 176 KICNSLAKLGGYTNNLKKFLSEKM 199 (435)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHH
Confidence 999999999999997666665544
No 6
>PF04480 DUF559: Protein of unknown function (DUF559); InterPro: IPR007569 This entry represents a protein of unknown function, but is thought to be a DNA mismatch repair endonuclease. ; PDB: 3R3P_B 3HRL_A.
Probab=98.70 E-value=9.5e-08 Score=86.22 Aligned_cols=93 Identities=23% Similarity=0.397 Sum_probs=65.1
Q ss_pred CCCHHHHHHHHHHHhc---CCCceeeeeecceeeeeecCCccEEEEEcCCCCCccCCCCCcchhHHHHHHHHHcCCEEEE
Q 006558 520 VTSSFQKEVARLLVST---GLNWIREYAVDGYTVDAVLVDKKVAFEIDGPTHFSRNTGVPLGHTMLKRRYIAAAGWNVVS 596 (640)
Q Consensus 520 ~~S~lq~eV~~~L~~l---G~~~~~E~~~~G~~VDi~l~~~rVAIEVDGP~Hf~~ns~~~lG~t~LK~RlL~~~Gw~VV~ 596 (640)
..|.....+-..|... |+.+...+.+++|.+|+++++.+||||+||+.|... ......|.+.|...||.|++
T Consensus 12 ~~s~~E~~Lw~~Lr~~~~~g~~f~~q~~ig~y~~Df~~~~~kl~IE~DG~~H~~~-----~~~D~~R~~~L~~~Gw~VlR 86 (108)
T PF04480_consen 12 NMSEAERKLWRELRRRRLGGYKFRRQVPIGRYRVDFACPEAKLAIEIDGRQHSTP-----RERDRRRDNWLEALGWTVLR 86 (108)
T ss_dssp ---HHHHHHHHHHGGGTTTT--EEEEEEETTEEEEEEETCTTEEEEEE-S-TT-------HHHHHHHHHHHHHTT-EEEE
T ss_pred CCCHHHHHHHHHHHhcCCCCceEEEecCCCCEEEeeccCcccEEEEEcCccccch-----HHhhHHHHHHHHHCCCEEEE
Confidence 4566667777777654 455677788999999999999999999999998764 56789999999999999999
Q ss_pred EchhHHhhhCChHHHHHHHHHHH
Q 006558 597 LSHQEWEELQGSFEQLDYLRVIL 619 (640)
Q Consensus 597 VPy~EW~~L~~~~er~~YLr~kL 619 (640)
++..+... ..++-++.+...|
T Consensus 87 ~~~~~v~~--~~~~vv~~I~~~i 107 (108)
T PF04480_consen 87 FTAEDVRE--DPEAVVEQIRAAI 107 (108)
T ss_dssp EEHHHHHH--GHHHHHHHHHHHH
T ss_pred eeHHHHHh--CHHHHHHHHHHHh
Confidence 99887642 2344455554443
No 7
>cd01038 Endonuclease_DUF559 Domain of unknown function, appears to be related to a diverse group of endonucleases.
Probab=98.66 E-value=1.6e-07 Score=84.65 Aligned_cols=80 Identities=19% Similarity=0.297 Sum_probs=70.4
Q ss_pred CCCCHHHHHHHHHHHhc---CCCceeeeeecceeeeeecCCccEEEEEcCCCCCccCCCCCcchhHHHHHHHHHcCCEEE
Q 006558 519 KVTSSFQKEVARLLVST---GLNWIREYAVDGYTVDAVLVDKKVAFEIDGPTHFSRNTGVPLGHTMLKRRYIAAAGWNVV 595 (640)
Q Consensus 519 ~~~S~lq~eV~~~L~~l---G~~~~~E~~~~G~~VDi~l~~~rVAIEVDGP~Hf~~ns~~~lG~t~LK~RlL~~~Gw~VV 595 (640)
...|+....+...|... |+.+...+.+++|.+|+++++.++|||+||++|+... .....|...|+.+||.|+
T Consensus 11 ~~~S~~E~~l~~~L~~~~~~g~~~~~q~~i~~~~vD~~~~~~kl~IE~DG~~H~~~~-----~~D~~R~~~L~~~Gw~vl 85 (108)
T cd01038 11 RNQTDAERLLWQELRRRRLNGFKFRRQAPIGRYIVDFACPEAKLVVELDGGQHDEQI-----AYDAERDAWLEARGFRVL 85 (108)
T ss_pred cCCCHHHHHHHHHHHhcccCCCceeeccCCCCcEeeeEccccCEEEEEeCcccCchH-----HHHHHHHHHHHHCCCEEE
Confidence 45889999999999887 7777777778889999999999999999999886532 789999999999999999
Q ss_pred EEchhHHh
Q 006558 596 SLSHQEWE 603 (640)
Q Consensus 596 ~VPy~EW~ 603 (640)
.+.+.++.
T Consensus 86 R~~~~dv~ 93 (108)
T cd01038 86 RFWNNEVL 93 (108)
T ss_pred EEEHHHHh
Confidence 99998874
No 8
>PRK14707 hypothetical protein; Provisional
Probab=98.65 E-value=3.1e-07 Score=112.33 Aligned_cols=177 Identities=15% Similarity=0.145 Sum_probs=119.3
Q ss_pred CCCChhhHHHHHHHHHhccccchhhhhhhhhhhhhHHHHHHHHHH---HhhCCCCCHHHHHHHHHHHHHhCCCcCCHHHH
Q 006558 230 SPLSPLNIATALHRIAKNMEKVSMMTTHRLAFTRQREMSMLVAIA---MTALPECSAQGISNIAWALSKIGGELLYLSEM 306 (640)
Q Consensus 230 s~fn~vn~aTALhRLAk~~~~~~~~~~rr~~~ar~~~~~~L~~~a---~~~l~~~~pq~LsnilWAlAkLg~~~~~~~el 306 (640)
..||+++++++|+-|.|..... ..++ ....|.+.. ......|+||+|+|++.+|+|....+......
T Consensus 662 ~~fnaQ~vAn~LNALSKWPe~e---------~Cr~-Aa~~LA~rLa~~~~Lr~al~pQ~vAN~LNALSKWP~~~~Cr~AA 731 (2710)
T PRK14707 662 KTFNSLDVANALNALSKWPDTP---------VCAA-AAGGMAERLAADPGLRKELNPVDVANALNALSKWPRTPVCAAVA 731 (2710)
T ss_pred hhcchHHHHHHHHhhhcCCCch---------HHHH-HHHHHHHHHhcChhhHhhcCHHHHHHHHhhhhcCCCcHHHHHHH
Confidence 4799999999999999996542 1111 112222221 23346799999999999999998776543334
Q ss_pred HHHHHHHH---hhhCCCCHHHHHHHHHHHHHCCCCC--HHHHHHHHHHHhh---hhcCCCHHHHHHHHHHHHhCCCCCh-
Q 006558 307 DRVAEVAL---TKVGEFNSQNVANVAGAFASMQHSA--PDLFSELAKRASD---IVHTFQEQELAQVLWAFASLYEPAD- 377 (640)
Q Consensus 307 ~aLa~~a~---~~i~~fspQ~LAnilwAlAkL~~~~--~~L~~aLa~~v~~---~l~~f~~QeLsniLWAfA~L~~~~~- 377 (640)
..|+.++. .....|++|+|+|.+.||+|.-... ..--.+++.++.+ ....|+||+++|+|.||+|+-..+.
T Consensus 732 ~~LA~rL~~~p~l~~a~~aQevANaLNALSKWPd~~~C~~AA~aLA~rLa~~~~Lr~aL~pQ~vAn~LNALSKWPe~~~C 811 (2710)
T PRK14707 732 SALAARVVAEPRLRKAFDAQQVATALNALSKWPDNQACAAAANTLAERQLREPDVRDVLKPREMTNALNALSKWPDTPAC 811 (2710)
T ss_pred HHHHHHHhcChhhhhhcCHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHhhCcchhhhcCHHHHHHHHHHhhcCCCchHH
Confidence 55555543 3467899999999999999987653 2445566666553 2467999999999999999975432
Q ss_pred -hHHHHHHHHhhhcchhHHHHHHHhhhcccCCCCCCCCCccchhhhcccCCCCCHHHHHHHHHHHHhcCCCC
Q 006558 378 -PLLESLDNAFKDATQFTCCLNKALSNCNENGGVKSSGDADSEGSLSSPVLSFNRDQLGNIAWSYAVLGQMD 448 (640)
Q Consensus 378 -~Ll~aL~~~~~~~~~f~~~L~~lvs~~~~~~~~~~~~~Ld~~~~~~~~l~~F~pqeLaniLWSLAvLg~~d 448 (640)
..-..|+.++... ......|++|+++|+|-+|++.-..+
T Consensus 812 r~AA~~LA~rLa~d--------------------------------p~Lr~af~AQ~VANaLNALSKWPd~~ 851 (2710)
T PRK14707 812 AAAASALAARVADD--------------------------------PRLREAFDVQHVATVLNAMSKWPDNA 851 (2710)
T ss_pred HHHHHHHHHHHhcC--------------------------------hhHHHhcCHHHHHHHHHHhccCCCch
Confidence 1111122211110 11235699999999999999987533
No 9
>PRK14707 hypothetical protein; Provisional
Probab=98.61 E-value=1.1e-06 Score=107.81 Aligned_cols=135 Identities=22% Similarity=0.217 Sum_probs=96.6
Q ss_pred CCChhhHHHHHHHHHhccccchhhhhhhhhhhhhHHHHHHHHHH---HhhCCCCCHHHHHHHHHHHHHhCCCcCCHHHHH
Q 006558 231 PLSPLNIATALHRIAKNMEKVSMMTTHRLAFTRQREMSMLVAIA---MTALPECSAQGISNIAWALSKIGGELLYLSEMD 307 (640)
Q Consensus 231 ~fn~vn~aTALhRLAk~~~~~~~~~~rr~~~ar~~~~~~L~~~a---~~~l~~~~pq~LsnilWAlAkLg~~~~~~~el~ 307 (640)
.||++++|++|.-|.|...... .++ ....|...+ .+....|++|+|+|++.||+|....+.......
T Consensus 705 al~pQ~vAN~LNALSKWP~~~~---------Cr~-AA~~LA~rL~~~p~l~~a~~aQevANaLNALSKWPd~~~C~~AA~ 774 (2710)
T PRK14707 705 ELNPVDVANALNALSKWPRTPV---------CAA-VASALAARVVAEPRLRKAFDAQQVATALNALSKWPDNQACAAAAN 774 (2710)
T ss_pred hcCHHHHHHHHhhhhcCCCcHH---------HHH-HHHHHHHHHhcChhhhhhcCHHHHHHHHHHhhcCCCchHHHHHHH
Confidence 6999999999999999965421 111 111122221 234578999999999999999987655444456
Q ss_pred HHHHHHHh---hhCCCCHHHHHHHHHHHHHCCCCCH--HHHHHHHHHHh---hhhcCCCHHHHHHHHHHHHhCCCC
Q 006558 308 RVAEVALT---KVGEFNSQNVANVAGAFASMQHSAP--DLFSELAKRAS---DIVHTFQEQELAQVLWAFASLYEP 375 (640)
Q Consensus 308 aLa~~a~~---~i~~fspQ~LAnilwAlAkL~~~~~--~L~~aLa~~v~---~~l~~f~~QeLsniLWAfA~L~~~ 375 (640)
+|+.++.+ ....|+||+|+|++.||+|.-.... ..-..|+.++. +....|++|+|+|.|.||+|+--.
T Consensus 775 aLA~rLa~~~~Lr~aL~pQ~vAn~LNALSKWPe~~~Cr~AA~~LA~rLa~dp~Lr~af~AQ~VANaLNALSKWPd~ 850 (2710)
T PRK14707 775 TLAERQLREPDVRDVLKPREMTNALNALSKWPDTPACAAAASALAARVADDPRLREAFDVQHVATVLNAMSKWPDN 850 (2710)
T ss_pred HHHHHHhhCcchhhhcCHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHhcChhHHHhcCHHHHHHHHHHhccCCCc
Confidence 67766543 3457999999999999999986654 34445665554 334679999999999999998543
No 10
>PRK09767 hypothetical protein; Provisional
Probab=98.48 E-value=1e-06 Score=80.58 Aligned_cols=94 Identities=19% Similarity=0.315 Sum_probs=73.2
Q ss_pred CCHHHHHHHHHHHh--c-CCCceeeeeecceeeeeecCCccEEEEEcCCCCCccCCCCCcchhHHHHHHHHHcCCEEEEE
Q 006558 521 TSSFQKEVARLLVS--T-GLNWIREYAVDGYTVDAVLVDKKVAFEIDGPTHFSRNTGVPLGHTMLKRRYIAAAGWNVVSL 597 (640)
Q Consensus 521 ~S~lq~eV~~~L~~--l-G~~~~~E~~~~G~~VDi~l~~~rVAIEVDGP~Hf~~ns~~~lG~t~LK~RlL~~~Gw~VV~V 597 (640)
.+.-.+.+-..|+. + |+.+...+.+++|.+|++.+..|+||||||.+|... -.....|...|+..||+|+.+
T Consensus 16 ~T~aE~~LW~~lr~~~~~g~kFrRQ~pig~yi~DF~c~~~rLaIE~DG~~H~~~-----~~~D~~R~~~L~~~G~~VlRf 90 (117)
T PRK09767 16 LTLQERKLWRYLRSRRFGDFKFRRQHPVGSYILDFACCSARVVVELDGGQHDLA-----VAYDTRRTSWLESQGWTVLRF 90 (117)
T ss_pred CCHHHHHHHHHHHhcccCCCeeEecccccCeeeceeccccCEEEEEeCcccchh-----HHHHHHHHHHHHHCCCEEEEE
Confidence 34445555556665 3 788999999999999999999999999999999431 368999999999999999999
Q ss_pred chhHHhhhCChHHHHHHHHHHHHH
Q 006558 598 SHQEWEELQGSFEQLDYLRVILKD 621 (640)
Q Consensus 598 Py~EW~~L~~~~er~~YLr~kL~~ 621 (640)
...+-. ...+.-++.+...|..
T Consensus 91 ~n~dV~--~~~~~Vl~~I~~~l~~ 112 (117)
T PRK09767 91 WNNEID--CNEEAVLEIILQELNR 112 (117)
T ss_pred EHHHHH--hCHHHHHHHHHHHHhc
Confidence 887744 3445556666666554
No 11
>cd00221 Vsr Very Short Patch Repair (Vsr) Endonuclease. Endonucleases in DNA repair that recognize damaged DNA and cleave the phosphodiester backbone. Vsr endonucleases have a common endonuclease topology that has been tailored for recognition of TG mismatches.
Probab=98.35 E-value=8.8e-07 Score=80.77 Aligned_cols=83 Identities=16% Similarity=0.123 Sum_probs=65.5
Q ss_pred CCCHHHHHHHHHHHhcCCCceeeeeecceeeeeecCCccEEEEEcCCC-CCccCC---C-------------CCcchhHH
Q 006558 520 VTSSFQKEVARLLVSTGLNWIREYAVDGYTVDAVLVDKKVAFEIDGPT-HFSRNT---G-------------VPLGHTML 582 (640)
Q Consensus 520 ~~S~lq~eV~~~L~~lG~~~~~E~~~~G~~VDi~l~~~rVAIEVDGP~-Hf~~ns---~-------------~~lG~t~L 582 (640)
..|+....|...|...|+.+...+...++.+|+++|+.+|||||||.. |.+... . ...-....
T Consensus 16 ~~s~~E~~lr~~L~~~Gl~~r~~~~~~~~~~D~~~~~~klaIe~DG~~wH~~~~~~~~~~~~~~~~w~~k~~~~~~rD~~ 95 (115)
T cd00221 16 KDTKPERAVRSALWELGYRFRKQDKDLPGKPDIVVPGYRLAIFVDGCFWHGHPCHKRKPPPKNTEFWLEKIERNVERDRR 95 (115)
T ss_pred CCCHHHHHHHHHHHHCCCEEEeCCCCCCcccCEEecCCCEEEEEcCccccCCccccccCCCccHHHHHHHHHHHHHHHHH
Confidence 467888999999999999887777667799999999999999999986 544311 0 11235677
Q ss_pred HHHHHHHcCCEEEEEchhHH
Q 006558 583 KRRYIAAAGWNVVSLSHQEW 602 (640)
Q Consensus 583 K~RlL~~~Gw~VV~VPy~EW 602 (640)
+...|+.+||.|+.|.-.||
T Consensus 96 r~~~L~~~GW~ViRvw~~e~ 115 (115)
T cd00221 96 VQAALERLGWRVLRVWECEL 115 (115)
T ss_pred HHHHHHHCcCEEEEEeCCcC
Confidence 88999999999999965544
No 12
>COG2852 Very-short-patch-repair endonuclease [Replication, recombination, and repair]
Probab=98.19 E-value=2.6e-06 Score=77.40 Aligned_cols=63 Identities=22% Similarity=0.358 Sum_probs=55.8
Q ss_pred CCCceeeeeecceeeeeecCCccEEEEEcCCCCCccCCCCCcchhHHHHHHHHHcCCEEEEEchhHHh
Q 006558 536 GLNWIREYAVDGYTVDAVLVDKKVAFEIDGPTHFSRNTGVPLGHTMLKRRYIAAAGWNVVSLSHQEWE 603 (640)
Q Consensus 536 G~~~~~E~~~~G~~VDi~l~~~rVAIEVDGP~Hf~~ns~~~lG~t~LK~RlL~~~Gw~VV~VPy~EW~ 603 (640)
|+.+.....+++|.||++.++.|++||+||+.|- ..-+..+-|.+.|...||.|+.++-.|-.
T Consensus 44 g~KFrRQ~~ig~yivDF~c~~~klIvElDG~qH~-----~~~~~Da~Rd~~L~~~G~~VLRf~N~ev~ 106 (129)
T COG2852 44 GFKFRRQQPIGRYIVDFACRDAKLIVELDGGQHE-----EREEYDAERDAFLESQGFTVLRFWNDEVL 106 (129)
T ss_pred CeeEEEeeeccCEEEEEEcCCccEEEEecCccch-----hhhhhhHHHHHHHHhCCceEEEeccHHHH
Confidence 7888889999999999999999999999999992 23468999999999999999999876643
No 13
>PF06743 FAST_1: FAST kinase-like protein, subdomain 1; InterPro: IPR010622 This entry represents a conserved region of eukaryotic Fas-activated serine/threonine (FAST) kinases that contains several conserved leucine residues. FAST kinase is rapidly activated during Fas-mediated apoptosis, when it phosphorylates TIA-1, a nuclear RNA-binding protein that has been implicated as an effector of apoptosis []. Note that many family members are hypothetical proteins.; GO: 0004672 protein kinase activity
Probab=98.04 E-value=1.2e-05 Score=67.07 Aligned_cols=59 Identities=22% Similarity=0.520 Sum_probs=41.9
Q ss_pred HHHHHHHHHHCCCCCH---HHHHHHHHHHhhhhcCCCHHHHHHHHHHHHhCCCCChhHHHHH
Q 006558 325 VANVAGAFASMQHSAP---DLFSELAKRASDIVHTFQEQELAQVLWAFASLYEPADPLLESL 383 (640)
Q Consensus 325 LAnilwAlAkL~~~~~---~L~~aLa~~v~~~l~~f~~QeLsniLWAfA~L~~~~~~Ll~aL 383 (640)
|++++|+||+|+|.++ ++|+.+...+.+.++.++|+++.+++|+++-+++.|..+++.+
T Consensus 1 i~~il~~fa~LNy~P~~~~~f~~~~~~~L~~~l~~~~p~~ll~~v~Sl~~l~~~p~~~l~~v 62 (71)
T PF06743_consen 1 IASILLPFARLNYQPPNAEEFFEKLIERLESYLDEFSPEDLLDLVWSLCLLQRFPEDLLNKV 62 (71)
T ss_pred CHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhCCHHHHHHH
Confidence 3567777777777654 4777777777777777777777777777777777776665543
No 14
>TIGR00632 vsr DNA mismatch endonuclease Vsr. All proteins in this family for which functions are known are G:T mismatch endonucleases that function in a specialized mismatch repair process used usually to repair G:T mismatches in specific sections of the genome. This family was based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Members of this family typically are found near to a DNA cytosine methyltransferase.
Probab=98.02 E-value=1.4e-05 Score=72.81 Aligned_cols=75 Identities=23% Similarity=0.215 Sum_probs=59.2
Q ss_pred HHHHHHHHHHhcCCCceeeeeecceeeeeecCCccEEEEEcCCC---CCccCCCC--------------CcchhHHHHHH
Q 006558 524 FQKEVARLLVSTGLNWIREYAVDGYTVDAVLVDKKVAFEIDGPT---HFSRNTGV--------------PLGHTMLKRRY 586 (640)
Q Consensus 524 lq~eV~~~L~~lG~~~~~E~~~~G~~VDi~l~~~rVAIEVDGP~---Hf~~ns~~--------------~lG~t~LK~Rl 586 (640)
--.-|-..|..+|+.+...+.+.+|.+||++++.|+||||||-. |-|..... ......-+...
T Consensus 23 pE~~lr~~L~~~G~rfR~q~~~lpg~pD~~~~~~klaIfVDGcfWHgh~c~~~~~pk~n~~fW~~Ki~~n~~rD~~~~~~ 102 (117)
T TIGR00632 23 PEKALASLLTGLGLRFRLQDASLPGTPDIVFDEYRCVIFIHGCFWHGHHCYLGKVPKTRTDFWSPKIEKNVERDRRVNSR 102 (117)
T ss_pred HHHHHHHHHHhCCCEEEEecCCCCCcccEEecCCCEEEEEcccccccCCcccccCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677888999999998888899999999999999999984 33432211 23567888999
Q ss_pred HHHcCCEEEEEc
Q 006558 587 IAAAGWNVVSLS 598 (640)
Q Consensus 587 L~~~Gw~VV~VP 598 (640)
|+.+||+|+.|.
T Consensus 103 L~~~Gw~Vlr~W 114 (117)
T TIGR00632 103 LQELGWRVLRVW 114 (117)
T ss_pred HHHCcCEEEEEe
Confidence 999999999983
No 15
>PF06743 FAST_1: FAST kinase-like protein, subdomain 1; InterPro: IPR010622 This entry represents a conserved region of eukaryotic Fas-activated serine/threonine (FAST) kinases that contains several conserved leucine residues. FAST kinase is rapidly activated during Fas-mediated apoptosis, when it phosphorylates TIA-1, a nuclear RNA-binding protein that has been implicated as an effector of apoptosis []. Note that many family members are hypothetical proteins.; GO: 0004672 protein kinase activity
Probab=97.89 E-value=4.4e-05 Score=63.70 Aligned_cols=62 Identities=15% Similarity=0.281 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhCCCcCCHHH-HHHHHHHHHhhhCCCCHHHHHHHHHHHHHCCCCCHHHHHHHH
Q 006558 286 ISNIAWALSKIGGELLYLSE-MDRVAEVALTKVGEFNSQNVANVAGAFASMQHSAPDLFSELA 347 (640)
Q Consensus 286 LsnilWAlAkLg~~~~~~~e-l~aLa~~a~~~i~~fspQ~LAnilwAlAkL~~~~~~L~~aLa 347 (640)
|++++|+||+|++.|....+ ++++.+.+.+.++.++|+++.+++|||+-+++.+.++.+.+.
T Consensus 1 i~~il~~fa~LNy~P~~~~~f~~~~~~~L~~~l~~~~p~~ll~~v~Sl~~l~~~p~~~l~~vf 63 (71)
T PF06743_consen 1 IASILLPFARLNYQPPNAEEFFEKLIERLESYLDEFSPEDLLDLVWSLCLLQRFPEDLLNKVF 63 (71)
T ss_pred CHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhhCCHHHHHHHc
Confidence 57899999999999987544 578888888999999999999999999999999998887664
No 16
>cd01037 Restriction_endonuclease_like Superfamily of nucleases including Short Patch Repair (Vsr) Endonucleases, archaeal Holliday junction resolvases, MutH methy-directed DNA mismatch-repair endonucleases, and catalytic domains of many restriction endonucleases, such as EcoRI, BamHI, and FokI
Probab=96.49 E-value=0.011 Score=47.96 Aligned_cols=73 Identities=21% Similarity=0.264 Sum_probs=51.6
Q ss_pred HHHHHHHHhcCCCcee---eeeecceeeeeecCCccEEEEEcCCCCCccCCCCCcchhHHHHHHHHHcCCEEEEEc
Q 006558 526 KEVARLLVSTGLNWIR---EYAVDGYTVDAVLVDKKVAFEIDGPTHFSRNTGVPLGHTMLKRRYIAAAGWNVVSLS 598 (640)
Q Consensus 526 ~eV~~~L~~lG~~~~~---E~~~~G~~VDi~l~~~rVAIEVDGP~Hf~~ns~~~lG~t~LK~RlL~~~Gw~VV~VP 598 (640)
..+...|.+.|..... .....++.+|++++..+++|||+|..|.............-+...|...||+++.+.
T Consensus 4 ~~l~~~l~~~~~~~~~~~~~~~~~~~~pDf~~~~~~~~ie~kg~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 79 (80)
T cd01037 4 RLLWKLLRAKGLAVRRFRRQVPIGSYIPDFVCPSAKLVIELKGTFHDGLLRKLRTSEKQERIAFLEADGKKVLRFW 79 (80)
T ss_pred HHHHHHHHhCCCCcEEeecCCCCCCCccCEEccCCCEEEEEECccccCchhhhhhcchHHHHHHHHHCCCEEEEEe
Confidence 3455677777766543 455677899999999999999999987654321111111367888999999999873
No 17
>PF08368 FAST_2: FAST kinase-like protein, subdomain 2; InterPro: IPR013579 This domain represents a conserved region of eukaryotic Fas-activated serine/threonine (FAST) kinases (2.7.1 from EC) that contains several conserved leucine residues. FAST kinase is rapidly activated during Fas-mediated apoptosis, when it phosphorylates TIA-1, a nuclear RNA-binding protein that has been implicated as an effector of apoptosis []. Note that many family members are hypothetical proteins. This subdomain is often found associated with the FAST kinase-like protein, subdomain 2.
Probab=96.27 E-value=0.012 Score=51.60 Aligned_cols=74 Identities=26% Similarity=0.285 Sum_probs=49.1
Q ss_pred HHHHHHHHhhhhCCccccc-cchHHHHHHHHhccccccCCCCCCHHHHHHHHHHHhc-CCC-c-eee-eeecceeeeeec
Q 006558 480 QVHLVNQCLKLEHPHLQLA-LSSVLEEKIASAGKTKRFNQKVTSSFQKEVARLLVST-GLN-W-IRE-YAVDGYTVDAVL 554 (640)
Q Consensus 480 QL~~~~~~l~lE~P~~~l~-l~~~L~~~l~~a~~~~~~~~~~~S~lq~eV~~~L~~l-G~~-~-~~E-~~~~G~~VDi~l 554 (640)
+|++++.++.+|+|++.++ ++..+.+...... ......+..|++|.+|.++|.++ |.+ + ... .++.||+||+.+
T Consensus 5 kL~~Ln~~v~LE~p~y~gp~L~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~L~~lLg~~~~~~~~v~tp~gy~iD~E~ 83 (93)
T PF08368_consen 5 KLLQLNAAVQLECPEYQGPRLPPRYQVKSFLVP-QSSKKEKQPSPLQQEVQEALKSLLGGENYFRSNVITPYGYTIDFEI 83 (93)
T ss_pred HHHHHHHHHhhcCCCCcCCCCChHHhhhhhhcc-ccccccCCCchHHHHHHHHHHHHhCCccceEEccccCCCceEEEEE
Confidence 5788899999999999876 3433311110010 11112356788999999999996 644 3 333 378999999987
No 18
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.21 E-value=6.3 Score=44.86 Aligned_cols=164 Identities=16% Similarity=0.250 Sum_probs=95.5
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhhhCCCCCCCCChhhHHHHHHHHHhccccchhhhhhhhhhhhhHHHHHHHHHHHhhC
Q 006558 199 LNKDIVDAQTAQEVLEVIAEMITAVGKGLSPSPLSPLNIATALHRIAKNMEKVSMMTTHRLAFTRQREMSMLVAIAMTAL 278 (640)
Q Consensus 199 Ln~~I~~a~s~~ell~lv~~~~~a~~~g~~~s~fn~vn~aTALhRLAk~~~~~~~~~~rr~~~ar~~~~~~L~~~a~~~l 278 (640)
|+.-|.. ..+..+...+. ++.. .--.+..|+||.-||.-.... |+.. ........|+ ..+
T Consensus 102 i~~vi~~-G~v~~lV~~l~-------~~~~--~~lq~eAAWaLTnIAsgtse~----T~~v--v~agavp~fi----~Ll 161 (514)
T KOG0166|consen 102 IDEVIQS-GVVPRLVEFLS-------RDDN--PTLQFEAAWALTNIASGTSEQ----TKVV--VDAGAVPIFI----QLL 161 (514)
T ss_pred HHHHHHc-CcHHHHHHHHc-------cCCC--hhHHHHHHHHHHHHhcCchhh----cccc--ccCCchHHHH----HHh
Confidence 6666666 55555544432 2211 111578899999999864432 2221 1111111222 223
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcCCHH-H-H-HHHHHHHHhhhCCCCH-HHHHHHHHHHHHCC-CC-CH---HHHHHHHHH
Q 006558 279 PECSAQGISNIAWALSKIGGELLYLS-E-M-DRVAEVALTKVGEFNS-QNVANVAGAFASMQ-HS-AP---DLFSELAKR 349 (640)
Q Consensus 279 ~~~~pq~LsnilWAlAkLg~~~~~~~-e-l-~aLa~~a~~~i~~fsp-Q~LAnilwAlAkL~-~~-~~---~L~~aLa~~ 349 (640)
.+-+..=-...+||++.+-++.+... . + -.+...++..+....+ .-+-|+.|++..|- .+ ++ +-...+...
T Consensus 162 ~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~ 241 (514)
T KOG0166|consen 162 SSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPA 241 (514)
T ss_pred cCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHH
Confidence 33444444667999999987654211 1 1 1122233444444444 78889999999994 33 22 345556667
Q ss_pred HhhhhcCCCHHHHHHHHHHHHhCCCCChhHHHH
Q 006558 350 ASDIVHTFQEQELAQVLWAFASLYEPADPLLES 382 (640)
Q Consensus 350 v~~~l~~f~~QeLsniLWAfA~L~~~~~~Ll~a 382 (640)
+...++.-.+.-+++++||++.|--.+.+...+
T Consensus 242 L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~ 274 (514)
T KOG0166|consen 242 LLRLLHSTDEEVLTDACWALSYLTDGSNEKIQM 274 (514)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHH
Confidence 778889999999999999999987555444333
No 19
>PF10881 DUF2726: Protein of unknown function (DUF2726); InterPro: IPR024402 This domain found in bacterial proteins has no known function.
Probab=93.06 E-value=0.15 Score=46.97 Aligned_cols=55 Identities=24% Similarity=0.318 Sum_probs=44.1
Q ss_pred cceeeeeecCC-----ccEEEEEcCCCCCccCCCCCcchhHHHHHHHHHcCCEEEEEchhHHh
Q 006558 546 DGYTVDAVLVD-----KKVAFEIDGPTHFSRNTGVPLGHTMLKRRYIAAAGWNVVSLSHQEWE 603 (640)
Q Consensus 546 ~G~~VDi~l~~-----~rVAIEVDGP~Hf~~ns~~~lG~t~LK~RlL~~~Gw~VV~VPy~EW~ 603 (640)
.+..+|+++-+ ...|||+||++|... .......+|.++|+..|..++.++-.+..
T Consensus 54 ~~~~vDFvv~d~~~~~p~~vIEld~~~h~~~---~~~~rD~~k~~~l~~agiplir~~~~~~~ 113 (126)
T PF10881_consen 54 NQKHVDFVVCDKRDGRPVAVIELDGSSHDQE---KRQERDEFKDRVLKKAGIPLIRISPKDSY 113 (126)
T ss_pred cCCCccEEEEECCCCcEEEEEEecCccccch---hhHHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence 45678888853 579999999999843 34558999999999999999999765543
No 20
>COG3727 Vsr DNA G:T-mismatch repair endonuclease [DNA replication, recombination, and repair]
Probab=92.88 E-value=0.43 Score=44.33 Aligned_cols=81 Identities=21% Similarity=0.337 Sum_probs=54.4
Q ss_pred CCHHHHHHHHHHHhcCCCceeee-eecceeeeeecCCccEEEEEcCCC---CCccCCCCCc----------chhHHHH--
Q 006558 521 TSSFQKEVARLLVSTGLNWIREY-AVDGYTVDAVLVDKKVAFEIDGPT---HFSRNTGVPL----------GHTMLKR-- 584 (640)
Q Consensus 521 ~S~lq~eV~~~L~~lG~~~~~E~-~~~G~~VDi~l~~~rVAIEVDGP~---Hf~~ns~~~l----------G~t~LK~-- 584 (640)
.+....-+..+|..+|+.+...- ...| .-||++++.+++|.|.|-. |-|...+.|- |+..-|.
T Consensus 21 dTkpE~~lr~~L~~~G~rfR~~~~~lpG-kPDiVl~~y~~viFvHGCFWh~H~c~~a~vPksnt~fWleKi~kNveRD~r 99 (150)
T COG3727 21 DTKPEKRLRSLLTGQGLRFRVQDKDLPG-KPDIVLPKYRCVIFVHGCFWHGHHCYLAKVPKSNTEFWLEKIGKNVERDER 99 (150)
T ss_pred CccHHHHHHHHHhhcceEEEecCCCCCC-CCCEeecCceEEEEEeeeeccCCccccccCCCcchHHHHHHHhhhhhhhHH
Confidence 34456677788899999876543 3333 5699999999999999964 3354433332 3333333
Q ss_pred --HHHHHcCCEEEEEchhHH
Q 006558 585 --RYIAAAGWNVVSLSHQEW 602 (640)
Q Consensus 585 --RlL~~~Gw~VV~VPy~EW 602 (640)
..|+.+||+|+.|--.+.
T Consensus 100 ~~~~L~~~GwrvlvVWEC~~ 119 (150)
T COG3727 100 DIKRLQQLGWRVLVVWECAL 119 (150)
T ss_pred HHHHHHHcCCeEEEEEeeec
Confidence 457889999999944333
No 21
>PF07671 DUF1601: Protein of unknown function (DUF1601); InterPro: IPR011632 This repeat is found in a small number of proteins and is apparently limited to Coxiella burnetii.
Probab=91.85 E-value=0.07 Score=38.83 Aligned_cols=28 Identities=21% Similarity=0.173 Sum_probs=18.2
Q ss_pred hhHHHHHHHHHHHhhCCCCCHHHHHHHH
Q 006558 263 RQREMSMLVAIAMTALPECSAQGISNIA 290 (640)
Q Consensus 263 r~~~~~~L~~~a~~~l~~~~pq~Lsnil 290 (640)
.|+.-..|+..+.+.+++|+||+|||++
T Consensus 10 ~q~L~~~L~~aV~~~a~~Fn~QeiaNtL 37 (37)
T PF07671_consen 10 EQRLSDRLLDAVRRNAEQFNPQEIANTL 37 (37)
T ss_pred hccchHHHHHHHHHHHHHcCHHHHhhcC
Confidence 3445556666666777777777777763
No 22
>PF03852 Vsr: DNA mismatch endonuclease Vsr; InterPro: IPR004603 This entry represents VSR (very short patch repair) endonucleases, which occur in a variety of bacteria. VSR recognises a TG mismatched base pair, generated after spontaneous deamination of methylated cytosines, and cleaves the phosphate backbone on the 5' side of the thymine []. GT mismatches can lead to C-to-T transition mutations if not repaired. VSR repairs the mismatches in favour of the G-containing strand. In Escherichia coli, this endonuclease nicks double-stranded DNA within the sequence CT(AT)GN or NT(AT)GG next to the thymidine residue, which is mismatched to 2'-deoxyguanosine []. The incision is mismatch-dependent and strand specific. The structure of VSR is similar to the core structure of restriction endonucleases, which have a 3-layer alpha/beta/alpha topology []. ; GO: 0004519 endonuclease activity, 0006298 mismatch repair; PDB: 1ODG_A 1VSR_A 1CW0_A.
Probab=87.92 E-value=0.59 Score=39.43 Aligned_cols=47 Identities=23% Similarity=0.278 Sum_probs=32.7
Q ss_pred CHHHHHHHHHHHhcCCCceeee-eecceeeeeecCCccEEEEEcCCCCC
Q 006558 522 SSFQKEVARLLVSTGLNWIREY-AVDGYTVDAVLVDKKVAFEIDGPTHF 569 (640)
Q Consensus 522 S~lq~eV~~~L~~lG~~~~~E~-~~~G~~VDi~l~~~rVAIEVDGP~Hf 569 (640)
+..-..|.++|..+|+.++..+ .+.| ..||+++..|+||.|||-.-.
T Consensus 21 TkpE~~lr~~L~~~G~RyR~~~~~lpG-~PDiv~~~~k~aIFVdGCFWH 68 (75)
T PF03852_consen 21 TKPELALRRALHALGLRYRLNRKDLPG-KPDIVFPKYKIAIFVDGCFWH 68 (75)
T ss_dssp -HHHHHHHHHHHHTT--EEES-TTSTT---SEEEGGGTEEEEEE-TTTT
T ss_pred ChHHHHHHHHHHhcCCEEEEccCcCCC-CCCEEECCCCEEEEEecceeC
Confidence 4466678889999999988775 4455 789999999999999997544
No 23
>PF07671 DUF1601: Protein of unknown function (DUF1601); InterPro: IPR011632 This repeat is found in a small number of proteins and is apparently limited to Coxiella burnetii.
Probab=87.56 E-value=0.28 Score=35.79 Aligned_cols=18 Identities=22% Similarity=0.309 Sum_probs=8.5
Q ss_pred HHHhhhhcCCCHHHHHHH
Q 006558 348 KRASDIVHTFQEQELAQV 365 (640)
Q Consensus 348 ~~v~~~l~~f~~QeLsni 365 (640)
.+|.+.+..|+||+|+|+
T Consensus 19 ~aV~~~a~~Fn~QeiaNt 36 (37)
T PF07671_consen 19 DAVRRNAEQFNPQEIANT 36 (37)
T ss_pred HHHHHHHHHcCHHHHhhc
Confidence 333344455555555554
No 24
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.84 E-value=1.8 Score=49.43 Aligned_cols=33 Identities=9% Similarity=0.182 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHhhhhcC---CCHHHHHHHHHHHHhC
Q 006558 340 PDLFSELAKRASDIVHT---FQEQELAQVLWAFASL 372 (640)
Q Consensus 340 ~~L~~aLa~~v~~~l~~---f~~QeLsniLWAfA~L 372 (640)
..||-+|-.++....+. =+.-+.|.++|+|--.
T Consensus 339 R~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~ 374 (665)
T KOG2422|consen 339 RQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPS 374 (665)
T ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCc
Confidence 35666666655433222 2455666666666544
No 25
>PHA00159 endonuclease I
Probab=68.12 E-value=7.6 Score=36.54 Aligned_cols=47 Identities=23% Similarity=0.375 Sum_probs=37.8
Q ss_pred CCCHHHHHHHHHHHhcCCCceeee-----ee----cceeeeeecCCccEEEEEcCCC
Q 006558 520 VTSSFQKEVARLLVSTGLNWIREY-----AV----DGYTVDAVLVDKKVAFEIDGPT 567 (640)
Q Consensus 520 ~~S~lq~eV~~~L~~lG~~~~~E~-----~~----~G~~VDi~l~~~rVAIEVDGP~ 567 (640)
-.|.++..|+.-|...|+.+..|. ++ .-|+-|+++|+ .++|||-|-.
T Consensus 15 fRSgLE~k~ak~Le~~gv~~~yE~~ki~y~~pA~~~~YTPDF~Lpn-GiiiEvKG~w 70 (148)
T PHA00159 15 FRSGLEDKVSKQLEKKGVKFDYELWKIPYVIPASDHKYTPDFLLPN-GIIIETKGLW 70 (148)
T ss_pred ccchHHHHHHHHHHhcCCCeEeeeeeeeeeccCCCCeeCCceecCC-CCEEEecccC
Confidence 468999999999999999987662 22 23889999997 6779999853
No 26
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.07 E-value=1.4e+02 Score=34.43 Aligned_cols=144 Identities=13% Similarity=0.200 Sum_probs=81.9
Q ss_pred CCCHHHHHHHHHHHHHhCCCcCCHHH--HHH-HHHHHHhhhCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHH-----Hh
Q 006558 280 ECSAQGISNIAWALSKIGGELLYLSE--MDR-VAEVALTKVGEFNSQNVANVAGAFASMQHSAPDLFSELAKR-----AS 351 (640)
Q Consensus 280 ~~~pq~LsnilWAlAkLg~~~~~~~e--l~a-La~~a~~~i~~fspQ~LAnilwAlAkL~~~~~~L~~aLa~~-----v~ 351 (640)
..+|.---..+||+..+-........ .++ ..-.....+.+-+..=.-..+||++..-...+.+-+.+..+ ++
T Consensus 121 ~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl 200 (514)
T KOG0166|consen 121 DDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLL 200 (514)
T ss_pred CCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHH
Confidence 45566678889999987642211000 000 00112233444445555677899999988888776665543 33
Q ss_pred hhhcCCCH-HHHHHHHHHHHhCCC--CChhHHHHHHHHhhhcchhHHHHHHHhhhcccCCCCCCCCCccchhhhcccCCC
Q 006558 352 DIVHTFQE-QELAQVLWAFASLYE--PADPLLESLDNAFKDATQFTCCLNKALSNCNENGGVKSSGDADSEGSLSSPVLS 428 (640)
Q Consensus 352 ~~l~~f~~-QeLsniLWAfA~L~~--~~~~Ll~aL~~~~~~~~~f~~~L~~lvs~~~~~~~~~~~~~Ld~~~~~~~~l~~ 428 (640)
..+....+ ..+-|+.|++..|-. .|.+-++.+...+- .+...+..
T Consensus 201 ~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp--------------------------------~L~~ll~~ 248 (514)
T KOG0166|consen 201 RLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILP--------------------------------ALLRLLHS 248 (514)
T ss_pred HHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHH--------------------------------HHHHHHhc
Confidence 44444433 677789999999832 24444444433210 11122344
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 006558 429 FNRDQLGNIAWSYAVLGQMDRIFFSDI 455 (640)
Q Consensus 429 F~pqeLaniLWSLAvLg~~d~~lf~~L 455 (640)
-++.-++++.|+++.|--.+.+..+.+
T Consensus 249 ~D~~Vl~Da~WAlsyLsdg~ne~iq~v 275 (514)
T KOG0166|consen 249 TDEEVLTDACWALSYLTDGSNEKIQMV 275 (514)
T ss_pred CCHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 467788999999997765555444443
No 27
>PF05367 Phage_endo_I: Phage endonuclease I; InterPro: IPR008029 Endonuclease I (3.1.21.2 from EC) is a junction-resolving enzyme encoded by bacteriophage T7, that selectively binds and cleaves four-way Holliday DNA junctions []. The structure of the enzyme shows that it forms a symmetric homodimer arranged in two well-separated domains. Each domain, however, is composed of elements from both subunits, and amino acid side chains from both protomers contribute to the active site []. ; GO: 0008833 deoxyribonuclease IV (phage-T4-induced) activity, 0015074 DNA integration, 0016032 viral reproduction; PDB: 3CAE_A 1M0D_A 1M0I_C 1FZR_B 2PFJ_B.
Probab=57.72 E-value=18 Score=34.22 Aligned_cols=60 Identities=27% Similarity=0.394 Sum_probs=36.5
Q ss_pred CCCHHHHHHHHHHHhcCCCceee-----eee---c-ceeeeeecCCccEEEEEcCCCCCccCCCCCcchhHHHHHHHHH
Q 006558 520 VTSSFQKEVARLLVSTGLNWIRE-----YAV---D-GYTVDAVLVDKKVAFEIDGPTHFSRNTGVPLGHTMLKRRYIAA 589 (640)
Q Consensus 520 ~~S~lq~eV~~~L~~lG~~~~~E-----~~~---~-G~~VDi~l~~~rVAIEVDGP~Hf~~ns~~~lG~t~LK~RlL~~ 589 (640)
-.|.|-..|+..|..+|+.+..| |++ . -|+-|+++|+ .|.||.-|... -..+-|+.+++.
T Consensus 15 yRSgLEekva~~L~~~gv~~~yE~~ki~Yvipa~~h~YtPDF~Lpn-giiiEtKG~f~---------~~DR~K~l~Ik~ 83 (149)
T PF05367_consen 15 YRSGLEEKVAKQLEKLGVKYEYESWKIPYVIPASEHKYTPDFVLPN-GIIIETKGRFD---------AEDRRKHLLIKE 83 (149)
T ss_dssp ---HHHHHHHHHHHHTT---EES-EEEEEEEEEEEEEE--SEE-TT-SEEEEEESS-----------HHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHcCCCceeeeeeeeeEeeccccccCCCEEccC-ceEEEeeeccC---------cchhHHHHHHHH
Confidence 36899999999999999887655 333 1 2888999987 59999999752 235555556654
No 28
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.71 E-value=5 Score=45.94 Aligned_cols=12 Identities=17% Similarity=0.124 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 006558 283 AQGISNIAWALS 294 (640)
Q Consensus 283 pq~LsnilWAlA 294 (640)
..-|...+|++-
T Consensus 304 adLieR~Ly~~d 315 (665)
T KOG2422|consen 304 ADLIERGLYVFD 315 (665)
T ss_pred HHHHHHHHHHHH
Confidence 333344444443
No 29
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=54.08 E-value=3e+02 Score=30.20 Aligned_cols=179 Identities=15% Similarity=0.265 Sum_probs=97.2
Q ss_pred HHHHHhhhcCC-----CCCChhhhhHHHHHHhccCCHHHHHHHHHHHHHhhhCCCCCCCCChhhHHHHHHHHHhccccch
Q 006558 178 EEFVHRLSQFS-----GPSNRRKEINLNKDIVDAQTAQEVLEVIAEMITAVGKGLSPSPLSPLNIATALHRIAKNMEKVS 252 (640)
Q Consensus 178 ~~~~q~~~~~~-----~ps~~~~~~~Ln~~I~~a~s~~ell~lv~~~~~a~~~g~~~s~fn~vn~aTALhRLAk~~~~~~ 252 (640)
|+..|....|. ..+|+ |+.-| +|.-+-...+.+.++- + .+-.+..|+||.-+|.=.+..
T Consensus 86 e~q~qav~kFR~~LS~E~~PP-----Iq~VI-daGvVpRfvefm~~~q----~-----~mlqfEAaWalTNiaSGtt~Q- 149 (526)
T COG5064 86 EQQLQAVYKFRKLLSKETSPP-----IQPVI-DAGVVPRFVEFMDEIQ----R-----DMLQFEAAWALTNIASGTTQQ- 149 (526)
T ss_pred HHHHHHHHHHHHHhccccCCC-----chhHH-hccccHHHHHHHHhcc----h-----hHHHHHHHHHHhhhccCcccc-
Confidence 44444444444 35555 55433 4555555556554431 1 344558899999988754331
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhCCCcCC-HH------HHHHHHHHHHhhhCCCCHHHH
Q 006558 253 MMTTHRLAFTRQREMSMLVAIAMTALPECSAQGISNIAWALSKIGGELLY-LS------EMDRVAEVALTKVGEFNSQNV 325 (640)
Q Consensus 253 ~~~~rr~~~ar~~~~~~L~~~a~~~l~~~~pq~LsnilWAlAkLg~~~~~-~~------el~aLa~~a~~~i~~fspQ~L 325 (640)
|+..--+ .....++++. ..-+-.-.-..+|||+.+.+++.. .+ .|+-+.....+... .-.=|
T Consensus 150 ---TkvVvd~--~AVPlfiqlL----~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~--~isml 218 (526)
T COG5064 150 ---TKVVVDA--GAVPLFIQLL----SSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAI--HISML 218 (526)
T ss_pred ---eEEEEeC--CchHHHHHHH----cCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccc--hHHHH
Confidence 2111000 0111122221 111222234679999998775431 11 13333333322111 12567
Q ss_pred HHHHHHHHHCCC--CCHHHHHHHHHH---HhhhhcCCCHHHHHHHHHHHHhCCCCChhHHHHH
Q 006558 326 ANVAGAFASMQH--SAPDLFSELAKR---ASDIVHTFQEQELAQVLWAFASLYEPADPLLESL 383 (640)
Q Consensus 326 AnilwAlAkL~~--~~~~L~~aLa~~---v~~~l~~f~~QeLsniLWAfA~L~~~~~~Ll~aL 383 (640)
-|..|.|+.|.. .+|+=+..+... +...+....+.-++..+||++.+--.+.+-..++
T Consensus 219 Rn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~av 281 (526)
T COG5064 219 RNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAV 281 (526)
T ss_pred HHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 899999999953 344555555544 4467788999999999999999876665444443
No 30
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=47.12 E-value=1.8e+02 Score=24.82 Aligned_cols=96 Identities=13% Similarity=0.087 Sum_probs=59.9
Q ss_pred hCCCCCHHHHHHHHHHHHHhCCCc-CCHHHH-H-HHHHHHHhhhCCCCHHHHHHHHHHHHHCCCCCHHHHHH-----HHH
Q 006558 277 ALPECSAQGISNIAWALSKIGGEL-LYLSEM-D-RVAEVALTKVGEFNSQNVANVAGAFASMQHSAPDLFSE-----LAK 348 (640)
Q Consensus 277 ~l~~~~pq~LsnilWAlAkLg~~~-~~~~el-~-aLa~~a~~~i~~fspQ~LAnilwAlAkL~~~~~~L~~a-----La~ 348 (640)
.+.+-++.-..+.+|+++.+.... .....+ + .+...+...+...++.-....+|+++.+-...+..-.. +..
T Consensus 15 ~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~ 94 (120)
T cd00020 15 LLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVP 94 (120)
T ss_pred HHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHHHCCChH
Confidence 334445788888999999887652 111111 1 22333444555667888889999999998776532222 344
Q ss_pred HHhhhhcCCCHHHHHHHHHHHHhC
Q 006558 349 RASDIVHTFQEQELAQVLWAFASL 372 (640)
Q Consensus 349 ~v~~~l~~f~~QeLsniLWAfA~L 372 (640)
.+...+...+..-.-..+|++..+
T Consensus 95 ~l~~~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 95 KLVNLLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHh
Confidence 555666666777777777777654
No 31
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=38.66 E-value=2.9e+02 Score=33.73 Aligned_cols=173 Identities=14% Similarity=0.097 Sum_probs=95.8
Q ss_pred HHHHHHhhhcCCC-CCChhhhhHHHHHHhccCCHHHHHHHHHHHHHhhhCCCCCCCCChhhHHHHHHHHHhccccchhhh
Q 006558 177 IEEFVHRLSQFSG-PSNRRKEINLNKDIVDAQTAQEVLEVIAEMITAVGKGLSPSPLSPLNIATALHRIAKNMEKVSMMT 255 (640)
Q Consensus 177 ~~~~~q~~~~~~~-ps~~~~~~~Ln~~I~~a~s~~ell~lv~~~~~a~~~g~~~s~fn~vn~aTALhRLAk~~~~~~~~~ 255 (640)
-|+||..+.+=.. ..++.+.+.|..-|..|.-.+.++..++... +.+..++-...+...|..+.|.-..+....
T Consensus 86 tE~~v~~l~~~~~~~~d~e~~~~~~~v~~~~gGL~~ll~~l~~~~-----~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll 160 (802)
T PF13764_consen 86 TEEFVESLEDDSEEEEDPEQEFKIASVLAECGGLEVLLSRLDSIR-----DFSRGRELLQVLLKLLRYCCKVKVNRRALL 160 (802)
T ss_pred chhhHhhccCccccccCHHHHHHHHHHhhcCCCHHHHHHHHHhhc-----cccCcHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4888888866443 4566678899999999999999999986643 222234455556666666666633322111
Q ss_pred hh----------hhhhhh------hHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHhhhCC
Q 006558 256 TH----------RLAFTR------QREMSMLVAIAMTALPECSAQGISNIAWALSKIGGELLYLSEMDRVAEVALTKVGE 319 (640)
Q Consensus 256 ~r----------r~~~ar------~~~~~~L~~~a~~~l~~~~pq~LsnilWAlAkLg~~~~~~~el~aLa~~a~~~i~~ 319 (640)
.. +..+.. ......|+..+...+.+-+.+.+.....+....+........+..+.+.+......
T Consensus 161 ~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r 240 (802)
T PF13764_consen 161 ELNALNRLLSVLNRALQANQNSSQAEIAEQLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVR 240 (802)
T ss_pred HcCCHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCcccc
Confidence 00 000000 01112222222222222222222222222111110000111245555555555556
Q ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHhhhh
Q 006558 320 FNSQNVANVAGAFASMQHSAPDLFSELAKRASDIV 354 (640)
Q Consensus 320 fspQ~LAnilwAlAkL~~~~~~L~~aLa~~v~~~l 354 (640)
-+++-+..++--+..|-+.+++.++++++++...+
T Consensus 241 ~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~F~p~l 275 (802)
T PF13764_consen 241 SNPQILQALARILPFLTYGNEEKMDALVEHFKPYL 275 (802)
T ss_pred CCHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHHhc
Confidence 67888888888999999999999999999987644
No 32
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=28.68 E-value=2.9e+02 Score=33.97 Aligned_cols=33 Identities=27% Similarity=0.383 Sum_probs=24.7
Q ss_pred ccCCHHHHHHHHHHHHHhhhCCCCCCCCChhhHHHHHHHHHhcccc
Q 006558 205 DAQTAQEVLEVIAEMITAVGKGLSPSPLSPLNIATALHRIAKNMEK 250 (640)
Q Consensus 205 ~a~s~~ell~lv~~~~~a~~~g~~~s~fn~vn~aTALhRLAk~~~~ 250 (640)
-..|.++++.++. ..++-+..|.+.||-++..+
T Consensus 424 ~P~s~eel~~lL~-------------~~~~~~~~~iI~RIrk~~hp 456 (840)
T PF04147_consen 424 CPSSHEELLELLD-------------GYSPEDQPTIIQRIRKCYHP 456 (840)
T ss_pred CCCCHHHHHHHHh-------------cCCHHHHhHHHHHHHHhCCC
Confidence 3457888998883 35566889999999988544
No 33
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=25.61 E-value=2.7e+02 Score=32.37 Aligned_cols=34 Identities=24% Similarity=0.223 Sum_probs=18.7
Q ss_pred hccCCHHHHHHHHHHHHHhhhCCCCCCCCChhhHHHHHHHHHhcc
Q 006558 204 VDAQTAQEVLEVIAEMITAVGKGLSPSPLSPLNIATALHRIAKNM 248 (640)
Q Consensus 204 ~~a~s~~ell~lv~~~~~a~~~g~~~s~fn~vn~aTALhRLAk~~ 248 (640)
..-...++.+.....-+ .++|-| +.++.|+|...
T Consensus 171 ~~l~~~~~Ai~~~~~al----------~l~p~~-~~a~~~~a~a~ 204 (615)
T TIGR00990 171 NALGDWEKVVEDTTAAL----------ELDPDY-SKALNRRANAY 204 (615)
T ss_pred HHhCCHHHHHHHHHHHH----------HcCCCC-HHHHHHHHHHH
Confidence 33456666666655433 244433 45777777654
No 34
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=24.53 E-value=2.3e+02 Score=21.41 Aligned_cols=33 Identities=21% Similarity=0.485 Sum_probs=24.9
Q ss_pred HHHHHHhhhcCCCCCChhhhhHHHHHHhccCCHHHHHHHHHH
Q 006558 177 IEEFVHRLSQFSGPSNRRKEINLNKDIVDAQTAQEVLEVIAE 218 (640)
Q Consensus 177 ~~~~~q~~~~~~~ps~~~~~~~Ln~~I~~a~s~~ell~lv~~ 218 (640)
.+.|++.+. +++ .|...|..|.|+++++.+..+
T Consensus 6 l~~Fl~~~~-----~d~----~l~~~l~~~~~~~e~~~lA~~ 38 (49)
T PF07862_consen 6 LKAFLEKVK-----SDP----ELREQLKACQNPEEVVALARE 38 (49)
T ss_pred HHHHHHHHh-----cCH----HHHHHHHhcCCHHHHHHHHHH
Confidence 456666664 333 488999999999999998754
No 35
>PF08597 eIF3_subunit: Translation initiation factor eIF3 subunit; InterPro: IPR013906 This shows protein subunits of the eukaryotic translation initiation factor 3 (eIF3). In yeast it is called Hcr1. The Saccharomyces cerevisiae (Baker's yeast) protein Q05775 from SWISSPROT has been shown to be required for processing of 20S pre-rRNA and binds to 18S rRNA and eIF3 subunits Rpg1p and Prt1p []. ; PDB: 3BPJ_D 2KRB_B.
Probab=23.86 E-value=43 Score=34.57 Aligned_cols=28 Identities=29% Similarity=0.292 Sum_probs=20.4
Q ss_pred HHHHHhHHhhCcchhHHHhhhhhhhhhh
Q 006558 86 KVALKSIEARGLASSMEDLIKVKKKKKK 113 (640)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (640)
-.-|.+=+.|-++.+|..|++-|.|.-|
T Consensus 175 ~~~L~~~~ikki~s~l~~l~nEK~K~EK 202 (245)
T PF08597_consen 175 CKNLTSEDIKKISSSLTVLANEKQKAEK 202 (245)
T ss_dssp HTTS-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345666778899999999998866555
No 36
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=23.61 E-value=8.5e+02 Score=25.39 Aligned_cols=184 Identities=15% Similarity=0.136 Sum_probs=95.5
Q ss_pred hHHHHHHhhhcCCCCCChhhhhHHHHHHhccCC--HHHHHHHHHHHHHhhhCCCCCCCCChhh-HHHHHHHHHhccccch
Q 006558 176 TIEEFVHRLSQFSGPSNRRKEINLNKDIVDAQT--AQEVLEVIAEMITAVGKGLSPSPLSPLN-IATALHRIAKNMEKVS 252 (640)
Q Consensus 176 ~~~~~~q~~~~~~~ps~~~~~~~Ln~~I~~a~s--~~ell~lv~~~~~a~~~g~~~s~fn~vn-~aTALhRLAk~~~~~~ 252 (640)
++++++.+++...+.-|+.. |++.+. ++. ..+|+.+++..+.+..+=.+ . ...| ...|++.||.+-...
T Consensus 2 ~~~~il~~l~~~~~~~P~~a---l~~A~~-~~e~i~P~Ll~~Le~a~~~~~e~~~--~-~~~~~~~~a~~LLaq~re~~- 73 (249)
T PF06685_consen 2 NIEEILEQLSYNDGEFPREA---LEAAIE-QREEITPELLKILEDAIERANELLD--D-EEYNLHFYALYLLAQFREER- 73 (249)
T ss_pred CHHHHHHHHHhccccCcHHH---HHHHHH-CHHHhhHHHHHHHHHHHHhHHHhcc--C-cchHHHHHHHHHHHHHhhhh-
Confidence 46888999999887777633 776666 333 35677777665432211110 0 1112 357888888874332
Q ss_pred hhhhhhhhhhhhHHHHHHHHH-------HHhhCCCCCHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHhhhCCCCHHHH
Q 006558 253 MMTTHRLAFTRQREMSMLVAI-------AMTALPECSAQGISNIAWALSKIGGELLYLSEMDRVAEVALTKVGEFNSQNV 325 (640)
Q Consensus 253 ~~~~rr~~~ar~~~~~~L~~~-------a~~~l~~~~pq~LsnilWAlAkLg~~~~~~~el~aLa~~a~~~i~~fspQ~L 325 (640)
.+..|+.. ....++++.+.++..++.+++.-... .+..+.. -..+..|-.-..
T Consensus 74 -------------A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~~G~~~-----~L~~li~--~~~~~~yvR~aa 133 (249)
T PF06685_consen 74 -------------ALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVGDGDIE-----PLKELIE--DPDADEYVRMAA 133 (249)
T ss_pred -------------hHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHhCCCHH-----HHHHHHh--CCcHHHHHHHHH
Confidence 12223332 34567788899999998877644321 1111111 112333333334
Q ss_pred HHHHHHHHHCCCCCH-HHHHHHHHHHhhhhcCCCHHHHHHHHHHHHhCCCCChhHHHHHHHHhhh
Q 006558 326 ANVAGAFASMQHSAP-DLFSELAKRASDIVHTFQEQELAQVLWAFASLYEPADPLLESLDNAFKD 389 (640)
Q Consensus 326 AnilwAlAkL~~~~~-~L~~aLa~~v~~~l~~f~~QeLsniLWAfA~L~~~~~~Ll~aL~~~~~~ 389 (640)
...+-.++..|-.+. ++.+.+..-+...+. -+++. ....|.-.-+..++.+++..|.++|..
T Consensus 134 ~~aL~~l~~~~~~~Re~vi~~f~~ll~~~l~-~~~~~-~~~~Lv~~~~dL~~~EL~~~I~~~f~~ 196 (249)
T PF06685_consen 134 ISALAFLVHEGPISREEVIQYFRELLNYFLE-RNPSF-LWGSLVADICDLYPEELLPEIRKAFED 196 (249)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHhc-cCchH-HHHHHHHHHHhcCHHHhHHHHHHHHHc
Confidence 444445555555544 333333333322221 22222 344444455677888888877776654
No 37
>PF07771 TSGP1: Tick salivary peptide group 1; InterPro: IPR011694 This entry contains a group of peptides derived from a salivary gland cDNA library of the tick Ixodes scapularis (Black-legged tick) []. Also present are peptides from a related tick species, Ixodes ricinus (Sheep tick). They are characterised by a putative signal peptide, indicative of secretion, and conserved cysteine residues.
Probab=22.55 E-value=22 Score=32.82 Aligned_cols=19 Identities=32% Similarity=0.707 Sum_probs=12.3
Q ss_pred ccccchhhhcccCCCCCCC
Q 006558 40 DSVDWESEFLGELDPFGYQ 58 (640)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~ 58 (640)
++..|+.-|++.--|=-|.
T Consensus 47 ~~~~W~~g~~~dGt~C~y~ 65 (120)
T PF07771_consen 47 DTNGWDYGFYGDGTPCFYN 65 (120)
T ss_pred CCCceEEEEecCCCccccC
Confidence 3567998888765554443
No 38
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=22.38 E-value=3.1e+02 Score=20.68 Aligned_cols=45 Identities=16% Similarity=0.289 Sum_probs=25.5
Q ss_pred HHHHHHHHCCCCCHHHHHHHHH----HHhhhhcCCCHHHHHHHHHHHHh
Q 006558 327 NVAGAFASMQHSAPDLFSELAK----RASDIVHTFQEQELAQVLWAFAS 371 (640)
Q Consensus 327 nilwAlAkL~~~~~~L~~aLa~----~v~~~l~~f~~QeLsniLWAfA~ 371 (640)
+.+|+++.+....++.+..... .+...+.+=++.--.+.+||+++
T Consensus 6 ~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 6 AAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred HHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 4567777776665555444333 33444555555555666777664
No 39
>TIGR00869 sec62 protein translocation protein, Sec62 family. protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins has been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.
Probab=20.81 E-value=49 Score=34.09 Aligned_cols=13 Identities=31% Similarity=0.399 Sum_probs=5.8
Q ss_pred HHHHhhhceeccc
Q 006558 12 YEEIISNIRIRRV 24 (640)
Q Consensus 12 ~~~~~~~~~~~~~ 24 (640)
..++|.+-=|-||
T Consensus 60 ~~~Li~~~l~~R~ 72 (232)
T TIGR00869 60 FILLIKNQMVIRV 72 (232)
T ss_pred HHHHHHcCCEEEE
Confidence 3344454444444
No 40
>PF03343 SART-1: SART-1 family; InterPro: IPR005011 This family of proteins appear to contain a leucine zipper [] and may therefore be a family of transcription factors.; PDB: 3PLV_C 3PLU_D.
Probab=20.07 E-value=35 Score=40.06 Aligned_cols=17 Identities=65% Similarity=0.749 Sum_probs=0.0
Q ss_pred HHhhhhhhhhhhhhhhH
Q 006558 102 EDLIKVKKKKKKGKKKL 118 (640)
Q Consensus 102 ~~~~~~~~~~~~~~~~~ 118 (640)
+.|+..||.|||++|++
T Consensus 279 ~Em~kfKK~KkKk~kk~ 295 (613)
T PF03343_consen 279 EEMIKFKKPKKKKKKKK 295 (613)
T ss_dssp -----------------
T ss_pred cccccccccccccchhh
Confidence 35677777666544433
Done!