Query 006558
Match_columns 640
No_of_seqs 270 out of 894
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 02:47:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006558.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006558hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hrl_A Endonuclease-like prote 98.8 2.3E-08 7.9E-13 88.3 11.5 94 520-620 3-99 (104)
2 3r3p_A MobIle intron protein; 98.7 1.1E-07 3.8E-12 84.1 10.8 97 522-625 6-103 (105)
3 1vsr_A Protein (VSR endonuclea 98.2 5.3E-06 1.8E-10 76.4 9.8 76 528-603 8-100 (136)
4 1cw0_A Protein (DNA mismatch e 98.1 1.6E-05 5.4E-10 74.8 11.7 83 521-603 20-119 (155)
5 1m0d_A Endonuclease, endodeoxy 83.3 1.4 4.8E-05 40.1 5.2 59 521-589 5-72 (138)
6 4b8j_A Importin subunit alpha- 79.3 62 0.0021 34.6 17.8 106 274-379 207-320 (528)
7 3tpo_A Importin subunit alpha- 77.2 65 0.0022 34.9 17.3 97 281-377 221-325 (529)
8 3ul1_B Importin subunit alpha- 76.3 89 0.0031 33.7 20.3 98 281-378 202-307 (510)
9 1wa5_B Importin alpha subunit; 74.3 98 0.0033 33.2 17.7 106 274-379 220-333 (530)
10 4b8j_A Importin subunit alpha- 66.7 1.4E+02 0.0047 31.8 24.2 108 273-380 164-279 (528)
11 1oyz_A Hypothetical protein YI 63.7 1.1E+02 0.0037 29.5 18.1 91 282-381 104-195 (280)
12 1wa5_B Importin alpha subunit; 56.7 2E+02 0.0069 30.6 15.7 110 267-380 175-292 (530)
13 4db8_A Armadillo-repeat protei 54.9 1.4E+02 0.0047 28.0 14.7 108 272-379 99-214 (252)
14 1oyz_A Hypothetical protein YI 52.5 1.6E+02 0.0056 28.2 18.6 93 279-374 64-157 (280)
15 3ul1_B Importin subunit alpha- 51.6 2.5E+02 0.0086 30.0 21.0 135 235-379 119-266 (510)
16 3tpo_A Importin subunit alpha- 48.0 1.9E+02 0.0066 31.0 13.8 111 268-378 250-368 (529)
17 4db6_A Armadillo repeat protei 46.1 1.7E+02 0.0058 26.5 14.9 108 271-378 56-171 (210)
18 4db8_A Armadillo-repeat protei 45.8 1.9E+02 0.0065 26.9 17.9 108 272-379 57-172 (252)
19 4hxt_A De novo protein OR329; 44.9 1.9E+02 0.0065 26.7 17.2 109 271-379 46-162 (252)
20 2jdq_A Importin alpha-1 subuni 38.5 3.3E+02 0.011 27.6 14.0 108 271-378 194-309 (450)
21 1y14_A B32, RPB4, DNA-directed 36.5 10 0.00034 36.3 0.9 9 168-176 80-88 (187)
22 1xqr_A HSPBP1 protein; armadil 35.6 1.3E+02 0.0045 30.2 9.3 105 265-372 124-236 (296)
23 3hou_D DNA-directed RNA polyme 35.3 24 0.00083 34.3 3.4 10 88-97 49-58 (221)
24 4db6_A Armadillo repeat protei 33.5 2.7E+02 0.0091 25.1 16.7 105 276-380 19-131 (210)
25 1xqr_A HSPBP1 protein; armadil 32.3 3.2E+02 0.011 27.3 11.6 97 277-373 90-195 (296)
26 2jdq_A Importin alpha-1 subuni 30.2 4.4E+02 0.015 26.6 17.2 105 274-378 154-267 (450)
27 2vgl_B AP-2 complex subunit be 29.1 5.4E+02 0.018 28.0 13.7 105 269-373 160-267 (591)
28 3hou_D DNA-directed RNA polyme 23.6 1.3E+02 0.0043 29.4 6.1 11 168-178 114-124 (221)
29 2nyt_A Probable C->U-editing e 23.2 73 0.0025 30.4 4.4 38 583-623 131-189 (190)
30 2vgl_B AP-2 complex subunit be 23.0 7.4E+02 0.025 26.8 14.4 125 231-374 97-231 (591)
31 3nmw_A APC variant protein; AR 21.7 4.2E+02 0.014 27.1 10.4 129 235-373 189-333 (354)
32 3tj5_B Metavinculin, SCA-famil 21.7 22 0.00074 23.0 0.2 14 94-107 10-23 (27)
33 4hxt_A De novo protein OR329; 21.6 4.6E+02 0.016 23.8 18.0 104 276-379 9-120 (252)
34 2byk_A Chrac-16; nucleosome sl 21.0 16 0.00054 33.4 -0.8 10 19-28 23-32 (140)
35 4fdd_A Transportin-1; heat rep 20.8 4.6E+02 0.016 29.7 11.5 123 236-372 340-469 (852)
No 1
>3hrl_A Endonuclease-like protein; structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Neisseria gonorrhoeae fa 1090}
Probab=98.83 E-value=2.3e-08 Score=88.28 Aligned_cols=94 Identities=21% Similarity=0.303 Sum_probs=70.0
Q ss_pred CCCHHHHHHHHHHHh---cCCCceeeeeecceeeeeecCCccEEEEEcCCCCCccCCCCCcchhHHHHHHHHHcCCEEEE
Q 006558 520 VTSSFQKEVARLLVS---TGLNWIREYAVDGYTVDAVLVDKKVAFEIDGPTHFSRNTGVPLGHTMLKRRYIAAAGWNVVS 596 (640)
Q Consensus 520 ~~S~lq~eV~~~L~~---lG~~~~~E~~~~G~~VDi~l~~~rVAIEVDGP~Hf~~ns~~~lG~t~LK~RlL~~~Gw~VV~ 596 (640)
..|..-..+-..|.. .|+.+...+.+++|.+|+++++.++||||||.+|.... .....|.+.|+.+||+|+.
T Consensus 3 ~~T~~E~~l~~~Lr~~~~~G~~fr~q~~i~~~~~Df~~~~~rl~IE~DG~~H~~~~-----~~D~~R~~~L~~~Gw~VlR 77 (104)
T 3hrl_A 3 AMSEAEAKLWQHLRAGRLNGYKFRRQQPMGNYIVDFMCVTPKLIVEADGGQHAEQA-----VYDHARTVYLNSLGFTVLR 77 (104)
T ss_dssp CCCHHHHHHHHHHGGGTTTTCCEEEEEEETTEEEEEEETTTTEEEEEEC------------CCCHHHHHHHHHTTCEEEE
T ss_pred CCCHHHHHHHHHHHhCCCCCcEEEeecccCCcEEeEEecCCCEEEEEECcccCChH-----HHHHHHHHHHHhCcCEEEE
Confidence 356667778888888 68888899999999999999999999999998887532 4599999999999999999
Q ss_pred EchhHHhhhCChHHHHHHHHHHHH
Q 006558 597 LSHQEWEELQGSFEQLDYLRVILK 620 (640)
Q Consensus 597 VPy~EW~~L~~~~er~~YLr~kL~ 620 (640)
+.+.++. ...+.-++-+++.|.
T Consensus 78 ~~~~dv~--~~~~~v~~~I~~~l~ 99 (104)
T 3hrl_A 78 FWNHEIL--QQTNDVLAEILRVLQ 99 (104)
T ss_dssp EEHHHHH--HCHHHHHHHHHHHHH
T ss_pred EEHHHHh--hCHHHHHHHHHHHHh
Confidence 9988864 223334444444443
No 2
>3r3p_A MobIle intron protein; homing endonuclease, hydrolase; 2.20A {Bacillus phage 0305phi8-36}
Probab=98.67 E-value=1.1e-07 Score=84.07 Aligned_cols=97 Identities=13% Similarity=0.146 Sum_probs=76.1
Q ss_pred CHHHHHHHHHHHhcCCCceeeeeecceeeeeecCCccEEEEEcCCC-CCccCCCCCcchhHHHHHHHHHcCCEEEEEchh
Q 006558 522 SSFQKEVARLLVSTGLNWIREYAVDGYTVDAVLVDKKVAFEIDGPT-HFSRNTGVPLGHTMLKRRYIAAAGWNVVSLSHQ 600 (640)
Q Consensus 522 S~lq~eV~~~L~~lG~~~~~E~~~~G~~VDi~l~~~rVAIEVDGP~-Hf~~ns~~~lG~t~LK~RlL~~~Gw~VV~VPy~ 600 (640)
|..-..+-..|...|+.+...+. .+|.+|+++++.|+||||||.. |.+. ...-...-|.+.|+..||+|+.+...
T Consensus 6 T~~E~~l~~~L~~~G~rfr~q~~-~~~~~Df~~~~~rl~IevDG~~wH~~~---~~~~rD~~r~~~L~~~Gw~Vlr~~~~ 81 (105)
T 3r3p_A 6 TTPERRVKEILDEMDIVYFTHHV-VEGWNVAFYLGKKLAIEVNGVYWASKQ---KNVNKDKRKLSELHSKGYRVLTIEDD 81 (105)
T ss_dssp CCHHHHHHHHHHHTTCCCEEEEE-ETTEEEEEEEETTEEEEEECSCCTTCC---CCHHHHHHHHHHHHHTTCEEEEEEGG
T ss_pred CHHHHHHHHHHHHCCCccEecCC-CCCeEEEEECCCCEEEEecCcccCCCc---hHHHHHHHHHHHHHHCCCEEEEEeHH
Confidence 44556677888999999988888 7899999999999999999999 8763 33457899999999999999999887
Q ss_pred HHhhhCChHHHHHHHHHHHHHHhhc
Q 006558 601 EWEELQGSFEQLDYLRVILKDYIGG 625 (640)
Q Consensus 601 EW~~L~~~~er~~YLr~kL~~~l~~ 625 (640)
+.. ..+.-++-++..|...+++
T Consensus 82 ~v~---~~~~v~~~I~~~l~~~~~~ 103 (105)
T 3r3p_A 82 ELN---DIDKVKQQIQKFWVTHISN 103 (105)
T ss_dssp GGG---GHHHHHHHHHHHHHHHHC-
T ss_pred HhC---CHHHHHHHHHHHHHHhhcc
Confidence 762 3344566666666655544
No 3
>1vsr_A Protein (VSR endonuclease); DNA repair, mismatch recognition, hydrolase; 1.80A {Escherichia coli} SCOP: c.52.1.15 PDB: 1odg_A*
Probab=98.20 E-value=5.3e-06 Score=76.44 Aligned_cols=76 Identities=20% Similarity=0.172 Sum_probs=59.2
Q ss_pred HHHHHHhcCCCceeeeeecceeeeeecCCccEEEEEcCCC---CCccCCCCCc--------------chhHHHHHHHHHc
Q 006558 528 VARLLVSTGLNWIREYAVDGYTVDAVLVDKKVAFEIDGPT---HFSRNTGVPL--------------GHTMLKRRYIAAA 590 (640)
Q Consensus 528 V~~~L~~lG~~~~~E~~~~G~~VDi~l~~~rVAIEVDGP~---Hf~~ns~~~l--------------G~t~LK~RlL~~~ 590 (640)
|-..|.+.|+.+...+.+.+|.+||+++..|+||||||-. |.|.....|- -...-+.+.|+.+
T Consensus 8 lr~~L~~~G~rfR~q~~~lpg~pD~v~~~~rlvIfvdGcfWHgH~c~~~~~p~tn~~~W~~Ki~~n~~rD~~~~~~L~~~ 87 (136)
T 1vsr_A 8 LASLLTGQGLAFRVQDASLPGRPDFVVDEYRCVIFTHGCFWHHHHCYLFKVPATRTEFWLEKIGKNVERDRRDISRLQEL 87 (136)
T ss_dssp HHHHHHHTTCCCEESCTTSTTCCSEEEGGGTEEEEEECTTTTTCSSTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCEEEEecCCCCCcccEEeccCCEEEEEeCccccCCCCccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 4566778899999988878889999999999999999977 5444332331 3456667799999
Q ss_pred CCEEEEEchhHHh
Q 006558 591 GWNVVSLSHQEWE 603 (640)
Q Consensus 591 Gw~VV~VPy~EW~ 603 (640)
||+|+.|.-.|-.
T Consensus 88 Gw~VlrfWe~ev~ 100 (136)
T 1vsr_A 88 GWRVLIVWECALR 100 (136)
T ss_dssp TCEEEEEEHHHHS
T ss_pred CCEEEEEehHHhh
Confidence 9999999665543
No 4
>1cw0_A Protein (DNA mismatch endonuclease); protein-DNA complex, intercalation, zinc, hydrolase/DNA; HET: DNA; 2.30A {Escherichia coli} SCOP: c.52.1.15
Probab=98.14 E-value=1.6e-05 Score=74.84 Aligned_cols=83 Identities=19% Similarity=0.193 Sum_probs=64.4
Q ss_pred CCHHHHHHHHHHHhcCCCceeeeeecceeeeeecCCccEEEEEcCCC---CCccCCCCCc--------------chhHHH
Q 006558 521 TSSFQKEVARLLVSTGLNWIREYAVDGYTVDAVLVDKKVAFEIDGPT---HFSRNTGVPL--------------GHTMLK 583 (640)
Q Consensus 521 ~S~lq~eV~~~L~~lG~~~~~E~~~~G~~VDi~l~~~rVAIEVDGP~---Hf~~ns~~~l--------------G~t~LK 583 (640)
.+.--.-|-..|.+.|+.+...+.+.+|.+||+++..|+||||||-. |.|.....|- ....-+
T Consensus 20 ~T~pE~~lr~~L~~~G~rfR~q~~~lpg~pDfv~~~~rlvIfVdGcfWHgH~c~~~~~p~tn~~~W~~Ki~~n~~rD~~r 99 (155)
T 1cw0_A 20 DTAIEKRLASLLTGQGLAFRVQDASLPGRPDFVVDEYRCVIFTHGCFWHHHHCYLFKVPATRTEFWLEKIGKNVERDRRD 99 (155)
T ss_dssp SCHHHHHHHHHHHHTTCCCEECCTTSTTCCSEEEGGGTEEEEEECTTTTTCSSTTCCCCSSSHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHCCCeEEEeCCCCCCcccEEcccCCEEEEEeChhhccCCCccCCCCCccHHHHHHHHHHHHHHHHHH
Confidence 34555667788888999999998888889999999999999999977 5444322331 356667
Q ss_pred HHHHHHcCCEEEEEchhHHh
Q 006558 584 RRYIAAAGWNVVSLSHQEWE 603 (640)
Q Consensus 584 ~RlL~~~Gw~VV~VPy~EW~ 603 (640)
...|+.+||+|+.|.-.|-.
T Consensus 100 ~~~L~~~Gw~VlrfWe~ev~ 119 (155)
T 1cw0_A 100 ISRLQELGWRVLIVWECALR 119 (155)
T ss_dssp HHHHHHTTCEEEEEEHHHHS
T ss_pred HHHHHHCCCEEEEEehHHhh
Confidence 77999999999999666543
No 5
>1m0d_A Endonuclease, endodeoxyribonuclease I; holliday junction resolvase, homodimer, domain swapped, composite active site, hydrolase; 1.90A {Enterobacteria phage T7} SCOP: c.52.1.17 PDB: 1m0i_A 2pfj_A 1fzr_A 3cae_A
Probab=83.32 E-value=1.4 Score=40.05 Aligned_cols=59 Identities=25% Similarity=0.399 Sum_probs=43.7
Q ss_pred CCHHHHHHHHHHHhcCCCceee-----eeec----ceeeeeecCCccEEEEEcCCCCCccCCCCCcchhHHHHHHHHH
Q 006558 521 TSSFQKEVARLLVSTGLNWIRE-----YAVD----GYTVDAVLVDKKVAFEIDGPTHFSRNTGVPLGHTMLKRRYIAA 589 (640)
Q Consensus 521 ~S~lq~eV~~~L~~lG~~~~~E-----~~~~----G~~VDi~l~~~rVAIEVDGP~Hf~~ns~~~lG~t~LK~RlL~~ 589 (640)
.|.+...++..|.++|+.+..| |++. -|+.|+++|+ .+.|||-|. |. ...+-|+.+++.
T Consensus 5 RSglEek~A~~Le~~GV~y~yE~~k~~Y~ip~~~~~YtPDF~Lpn-gi~iEvKG~--~~-------~~dR~K~k~ike 72 (138)
T 1m0d_A 5 RSGLEDKVSKQLESKGIKFEYEEWKVPYVIPASNHTYTPDFLLPN-GIFVETKGL--WE-------SDDRKKHLLIRE 72 (138)
T ss_dssp -CHHHHHHHHHHHHTTCCCEESCEEEEEEECCEEEEECCSEECTT-SCEEEEESS--CC-------HHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHhCCCCEEeecceEeeeecCCCceeCCCEEccC-CCEEEeccc--CC-------HHHHHHHHHHHH
Confidence 5889999999999999988665 3432 3889999997 789999994 32 245555655554
No 6
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=79.28 E-value=62 Score=34.62 Aligned_cols=106 Identities=10% Similarity=0.133 Sum_probs=73.9
Q ss_pred HHhhC-CCCCHHHHHHHHHHHHHhCCCcCC--HHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHCCCCCHHHHHHHH---
Q 006558 274 AMTAL-PECSAQGISNIAWALSKIGGELLY--LSEMDRVAEVALTKVGEFNSQNVANVAGAFASMQHSAPDLFSELA--- 347 (640)
Q Consensus 274 a~~~l-~~~~pq~LsnilWAlAkLg~~~~~--~~el~aLa~~a~~~i~~fspQ~LAnilwAlAkL~~~~~~L~~aLa--- 347 (640)
....+ ..-++.-..+++|+++.|....+. ......+...+...+..-++.-..+++|+++.+...++.....+.
T Consensus 207 Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g 286 (528)
T 4b8j_A 207 LLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAG 286 (528)
T ss_dssp HHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTT
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcC
Confidence 33445 456788889999999998754211 111223444455566777889999999999999988776554443
Q ss_pred --HHHhhhhcCCCHHHHHHHHHHHHhCCCCChhH
Q 006558 348 --KRASDIVHTFQEQELAQVLWAFASLYEPADPL 379 (640)
Q Consensus 348 --~~v~~~l~~f~~QeLsniLWAfA~L~~~~~~L 379 (640)
..+...+..-++.-....+|+++.+-......
T Consensus 287 ~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~ 320 (528)
T 4b8j_A 287 VCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQ 320 (528)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHH
Confidence 35666677777888889999999987765443
No 7
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=77.22 E-value=65 Score=34.88 Aligned_cols=97 Identities=10% Similarity=0.179 Sum_probs=63.5
Q ss_pred CCHHHHHHHHHHHHHhCCCc--C-CHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHCCCCCHHHHHHHH-----HHHhh
Q 006558 281 CSAQGISNIAWALSKIGGEL--L-YLSEMDRVAEVALTKVGEFNSQNVANVAGAFASMQHSAPDLFSELA-----KRASD 352 (640)
Q Consensus 281 ~~pq~LsnilWAlAkLg~~~--~-~~~el~aLa~~a~~~i~~fspQ~LAnilwAlAkL~~~~~~L~~aLa-----~~v~~ 352 (640)
....-+.+++|+++.+.... . .......+...+...+..-++.-..+.+|+++.+-..+.+....+. ..+..
T Consensus 221 ~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~ 300 (529)
T 3tpo_A 221 LACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVK 300 (529)
T ss_dssp SCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHH
Confidence 34556789999999875422 1 1112233444555667777889999999999999887776555443 34455
Q ss_pred hhcCCCHHHHHHHHHHHHhCCCCCh
Q 006558 353 IVHTFQEQELAQVLWAFASLYEPAD 377 (640)
Q Consensus 353 ~l~~f~~QeLsniLWAfA~L~~~~~ 377 (640)
.+..-++.-....+.+++.+-..++
T Consensus 301 lL~~~~~~v~~~a~~aL~nl~~~~~ 325 (529)
T 3tpo_A 301 LLGATELPIVTPALRAIGNIVTGTD 325 (529)
T ss_dssp HHTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HhcCCChhHHHHHHHHHHHHHccch
Confidence 5666666666777777777655443
No 8
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=76.26 E-value=89 Score=33.65 Aligned_cols=98 Identities=10% Similarity=0.172 Sum_probs=65.5
Q ss_pred CCHHHHHHHHHHHHHhCCCc---CCHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHCCCCCHHHHHHHH-----HHHhh
Q 006558 281 CSAQGISNIAWALSKIGGEL---LYLSEMDRVAEVALTKVGEFNSQNVANVAGAFASMQHSAPDLFSELA-----KRASD 352 (640)
Q Consensus 281 ~~pq~LsnilWAlAkLg~~~---~~~~el~aLa~~a~~~i~~fspQ~LAnilwAlAkL~~~~~~L~~aLa-----~~v~~ 352 (640)
....-+.+++|+++.+.... ........+...+...+..-++.-..+.+|+++.+-..+.+....+. ..+..
T Consensus 202 ~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~ 281 (510)
T 3ul1_B 202 LACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVK 281 (510)
T ss_dssp SCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhh
Confidence 44556789999999875422 11112234445555667778889999999999999888776554433 34556
Q ss_pred hhcCCCHHHHHHHHHHHHhCCCCChh
Q 006558 353 IVHTFQEQELAQVLWAFASLYEPADP 378 (640)
Q Consensus 353 ~l~~f~~QeLsniLWAfA~L~~~~~~ 378 (640)
.+..-++.-....+++++.+-..++.
T Consensus 282 lL~~~~~~v~~~al~aL~nl~~~~~~ 307 (510)
T 3ul1_B 282 LLGATELPIVTPALRAIGNIVTGTDE 307 (510)
T ss_dssp HHTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred hhcCCChhhhhHHHHHHHHhhcCCHH
Confidence 66666777777778888877655443
No 9
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=74.27 E-value=98 Score=33.15 Aligned_cols=106 Identities=10% Similarity=0.127 Sum_probs=70.2
Q ss_pred HHhhCCCCCHHHHHHHHHHHHHhCCCc--C-CHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHCCCCCHHHHHHHH---
Q 006558 274 AMTALPECSAQGISNIAWALSKIGGEL--L-YLSEMDRVAEVALTKVGEFNSQNVANVAGAFASMQHSAPDLFSELA--- 347 (640)
Q Consensus 274 a~~~l~~~~pq~LsnilWAlAkLg~~~--~-~~~el~aLa~~a~~~i~~fspQ~LAnilwAlAkL~~~~~~L~~aLa--- 347 (640)
....+..-++.-..+.+|+++.+.... . .......+...+...+..-++.-..+++|+++.+-..+++....+.
T Consensus 220 L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~ 299 (530)
T 1wa5_B 220 ILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVR 299 (530)
T ss_dssp HHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTT
T ss_pred HHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcC
Confidence 334444556777789999999986432 1 1111223344445556666788889999999999887776555443
Q ss_pred --HHHhhhhcCCCHHHHHHHHHHHHhCCCCChhH
Q 006558 348 --KRASDIVHTFQEQELAQVLWAFASLYEPADPL 379 (640)
Q Consensus 348 --~~v~~~l~~f~~QeLsniLWAfA~L~~~~~~L 379 (640)
..+...+..-++.-....+|+++.+....+..
T Consensus 300 ~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 333 (530)
T 1wa5_B 300 IPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQ 333 (530)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred cHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHH
Confidence 34556666667777788889998887665443
No 10
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=66.70 E-value=1.4e+02 Score=31.82 Aligned_cols=108 Identities=14% Similarity=0.177 Sum_probs=69.8
Q ss_pred HHHhhCCCCCHHHHHHHHHHHHHhCCCcCC-HHHHH--HHHHHHHhhh-CCCCHHHHHHHHHHHHHCCCCC----HHHHH
Q 006558 273 IAMTALPECSAQGISNIAWALSKIGGELLY-LSEMD--RVAEVALTKV-GEFNSQNVANVAGAFASMQHSA----PDLFS 344 (640)
Q Consensus 273 ~a~~~l~~~~pq~LsnilWAlAkLg~~~~~-~~el~--aLa~~a~~~i-~~fspQ~LAnilwAlAkL~~~~----~~L~~ 344 (640)
.....+..-++.-..+.+|+++.+...... ...+- .+...++..+ ..-++.-..+++|+|+.+.... .....
T Consensus 164 ~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~ 243 (528)
T 4b8j_A 164 IFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTR 243 (528)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHH
Confidence 333445555777778999999998643221 11110 0223344455 4567888899999999986542 23344
Q ss_pred HHHHHHhhhhcCCCHHHHHHHHHHHHhCCCCChhHH
Q 006558 345 ELAKRASDIVHTFQEQELAQVLWAFASLYEPADPLL 380 (640)
Q Consensus 345 aLa~~v~~~l~~f~~QeLsniLWAfA~L~~~~~~Ll 380 (640)
.+...+...+..-++.-..+.+|+++.+...+....
T Consensus 244 ~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~ 279 (528)
T 4b8j_A 244 PALPALARLIHSNDEEVLTDACWALSYLSDGTNDKI 279 (528)
T ss_dssp THHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 455566667777888999999999999987665443
No 11
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=63.66 E-value=1.1e+02 Score=29.52 Aligned_cols=91 Identities=9% Similarity=-0.026 Sum_probs=38.1
Q ss_pred CHHHHHHHHHHHHHhCCC-cCCHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHhhhhcCCCHH
Q 006558 282 SAQGISNIAWALSKIGGE-LLYLSEMDRVAEVALTKVGEFNSQNVANVAGAFASMQHSAPDLFSELAKRASDIVHTFQEQ 360 (640)
Q Consensus 282 ~pq~LsnilWAlAkLg~~-~~~~~el~aLa~~a~~~i~~fspQ~LAnilwAlAkL~~~~~~L~~aLa~~v~~~l~~f~~Q 360 (640)
++.--...+|+++.++.. +.+. ..+...+...+..-++.--...+++++.++... ... .+...+.+-++.
T Consensus 104 ~~~vr~~a~~aL~~l~~~~~~~~---~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~--~~~----~L~~~l~d~~~~ 174 (280)
T 1oyz_A 104 SACVRATAIESTAQRCKKNPIYS---PKIVEQSQITAFDKSTNVRRATAFAISVINDKA--TIP----LLINLLKDPNGD 174 (280)
T ss_dssp CHHHHHHHHHHHHHHHHHCGGGH---HHHHHHHHHHTTCSCHHHHHHHHHHHHTC---C--CHH----HHHHHHTCSSHH
T ss_pred CHHHHHHHHHHHHHHhccCCccc---HHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCHH--HHH----HHHHHHcCCCHH
Confidence 444445566666666521 1110 112222223344444555555666666655321 111 112222333444
Q ss_pred HHHHHHHHHHhCCCCChhHHH
Q 006558 361 ELAQVLWAFASLYEPADPLLE 381 (640)
Q Consensus 361 eLsniLWAfA~L~~~~~~Ll~ 381 (640)
--...+|+++.++...+..+.
T Consensus 175 vr~~a~~aL~~~~~~~~~~~~ 195 (280)
T 1oyz_A 175 VRNWAAFAININKYDNSDIRD 195 (280)
T ss_dssp HHHHHHHHHHHHTCCCHHHHH
T ss_pred HHHHHHHHHHhhccCcHHHHH
Confidence 445556666665544443333
No 12
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=56.74 E-value=2e+02 Score=30.61 Aligned_cols=110 Identities=13% Similarity=0.241 Sum_probs=67.6
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHHHHhCCCcC-CHHHH--HHHHHHHHhhhCCCCHHHHHHHHHHHHHCCCCC----
Q 006558 267 MSMLVAIAMTALPECSAQGISNIAWALSKIGGELL-YLSEM--DRVAEVALTKVGEFNSQNVANVAGAFASMQHSA---- 339 (640)
Q Consensus 267 ~~~L~~~a~~~l~~~~pq~LsnilWAlAkLg~~~~-~~~el--~aLa~~a~~~i~~fspQ~LAnilwAlAkL~~~~---- 339 (640)
+..|+..... -++.-..+.+|+++.+..... ....+ ..+...+...+..-++.-..+.+|+++.+-...
T Consensus 175 i~~Lv~lL~~----~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~ 250 (530)
T 1wa5_B 175 VPLFIQLLYT----GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQP 250 (530)
T ss_dssp HHHHHHHHHH----CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCC
T ss_pred HHHHHHHHcC----CCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCC
Confidence 3445544432 467777889999999875432 11111 012233444555566777888999999886432
Q ss_pred -HHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHhCCCCChhHH
Q 006558 340 -PDLFSELAKRASDIVHTFQEQELAQVLWAFASLYEPADPLL 380 (640)
Q Consensus 340 -~~L~~aLa~~v~~~l~~f~~QeLsniLWAfA~L~~~~~~Ll 380 (640)
......+...+...+..-++.-....+|+++.+-..+....
T Consensus 251 ~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~ 292 (530)
T 1wa5_B 251 DWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAI 292 (530)
T ss_dssp CHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred cHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 23333445555566666678888899999999876554433
No 13
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=54.88 E-value=1.4e+02 Score=27.96 Aligned_cols=108 Identities=16% Similarity=0.203 Sum_probs=73.7
Q ss_pred HHHHhhCCCCCHHHHHHHHHHHHHhCCCcCCH-HHH-H-HHHHHHHhhhCCCCHHHHHHHHHHHHHCCCCCHHHHHHHH-
Q 006558 272 AIAMTALPECSAQGISNIAWALSKIGGELLYL-SEM-D-RVAEVALTKVGEFNSQNVANVAGAFASMQHSAPDLFSELA- 347 (640)
Q Consensus 272 ~~a~~~l~~~~pq~LsnilWAlAkLg~~~~~~-~el-~-aLa~~a~~~i~~fspQ~LAnilwAlAkL~~~~~~L~~aLa- 347 (640)
......+..-++.-..+.+|+++.+...+... ..+ + .+...+...+..-++.-..+.+|+++.+-..++.....+.
T Consensus 99 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 178 (252)
T 4db8_A 99 PALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID 178 (252)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 33444555567888899999999998654321 111 1 1334455566667888899999999999988776555443
Q ss_pred ----HHHhhhhcCCCHHHHHHHHHHHHhCCCCChhH
Q 006558 348 ----KRASDIVHTFQEQELAQVLWAFASLYEPADPL 379 (640)
Q Consensus 348 ----~~v~~~l~~f~~QeLsniLWAfA~L~~~~~~L 379 (640)
..+...+..-++.-....+|+++.+-..++..
T Consensus 179 ~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 214 (252)
T 4db8_A 179 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 214 (252)
T ss_dssp TTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHH
T ss_pred CCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 34556666667888889999999987555443
No 14
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=52.54 E-value=1.6e+02 Score=28.15 Aligned_cols=93 Identities=10% Similarity=-0.016 Sum_probs=55.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHH-hhhCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHhhhhcCC
Q 006558 279 PECSAQGISNIAWALSKIGGELLYLSEMDRVAEVAL-TKVGEFNSQNVANVAGAFASMQHSAPDLFSELAKRASDIVHTF 357 (640)
Q Consensus 279 ~~~~pq~LsnilWAlAkLg~~~~~~~el~aLa~~a~-~~i~~fspQ~LAnilwAlAkL~~~~~~L~~aLa~~v~~~l~~f 357 (640)
.+-++.--...+|+++.++..+... ..+...+. .....-++.--..++|+|+.++..++.....+...+...+.+-
T Consensus 64 ~d~~~~vR~~A~~aL~~l~~~~~~~---~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~ 140 (280)
T 1oyz_A 64 SDKNYIRRDIGAFILGQIKICKKCE---DNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDK 140 (280)
T ss_dssp TCSSHHHHHHHHHHHHHSCCCTTTH---HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCS
T ss_pred cCCCHHHHHHHHHHHHHhccccccc---hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCC
Confidence 4446666678889999998654332 22222211 1123446777788899999987443322233344444555666
Q ss_pred CHHHHHHHHHHHHhCCC
Q 006558 358 QEQELAQVLWAFASLYE 374 (640)
Q Consensus 358 ~~QeLsniLWAfA~L~~ 374 (640)
++.--...+++++.++.
T Consensus 141 ~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 141 STNVRRATAFAISVIND 157 (280)
T ss_dssp CHHHHHHHHHHHHTC--
T ss_pred CHHHHHHHHHHHHhcCC
Confidence 77777788888888765
No 15
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=51.63 E-value=2.5e+02 Score=30.01 Aligned_cols=135 Identities=16% Similarity=0.222 Sum_probs=79.2
Q ss_pred hhHHHHHHHHHhccccchhhhhhhhhhhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhCCCcCCHH-HH-H-HHHH
Q 006558 235 LNIATALHRIAKNMEKVSMMTTHRLAFTRQREMSMLVAIAMTALPECSAQGISNIAWALSKIGGELLYLS-EM-D-RVAE 311 (640)
Q Consensus 235 vn~aTALhRLAk~~~~~~~~~~rr~~~ar~~~~~~L~~~a~~~l~~~~pq~LsnilWAlAkLg~~~~~~~-el-~-aLa~ 311 (640)
.+.++||..||...... +..+.....+..| ...+..-++.-.-..+|+|+.+-.+..... .+ + ....
T Consensus 119 ~~Aa~aL~nias~~~e~------~~~vv~~GaIp~L----v~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~ 188 (510)
T 3ul1_B 119 FESAWALTNIASGTSEQ------TKAVVDGGAIPAF----ISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAID 188 (510)
T ss_dssp HHHHHHHHHHHTSCHHH------HHHHHHTTHHHHH----HHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhcCCHHH------HHHHHHCCCHHHH----HHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChH
Confidence 47788999998753221 1011111223333 344556667777889999999975432111 11 0 0111
Q ss_pred HHHhhhC-----CCCHHHHHHHHHHHHHCCCCC-----HHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHhCCCCChhH
Q 006558 312 VALTKVG-----EFNSQNVANVAGAFASMQHSA-----PDLFSELAKRASDIVHTFQEQELAQVLWAFASLYEPADPL 379 (640)
Q Consensus 312 ~a~~~i~-----~fspQ~LAnilwAlAkL~~~~-----~~L~~aLa~~v~~~l~~f~~QeLsniLWAfA~L~~~~~~L 379 (640)
.++..+. .....-+.+++|+++.+-... ......+...+...+..-++.-..+.+|+++.+-..+...
T Consensus 189 ~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~ 266 (510)
T 3ul1_B 189 PLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNER 266 (510)
T ss_dssp HHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHH
T ss_pred HHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhh
Confidence 2223332 234456788999998874332 2334455566667778888899999999999998766543
No 16
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=48.03 E-value=1.9e+02 Score=31.02 Aligned_cols=111 Identities=9% Similarity=0.141 Sum_probs=73.1
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHHHHhCCCcCCHHH-H--HHHHHHHHhhhCCCCHHHHHHHHHHHHHCCCCCHHHHH
Q 006558 268 SMLVAIAMTALPECSAQGISNIAWALSKIGGELLYLSE-M--DRVAEVALTKVGEFNSQNVANVAGAFASMQHSAPDLFS 344 (640)
Q Consensus 268 ~~L~~~a~~~l~~~~pq~LsnilWAlAkLg~~~~~~~e-l--~aLa~~a~~~i~~fspQ~LAnilwAlAkL~~~~~~L~~ 344 (640)
..++......+..-++.-+.+.+|+++.+...+..... + ..+...+...+..-++.-....+.+++.+-..++..-.
T Consensus 250 ~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~ 329 (529)
T 3tpo_A 250 EQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQ 329 (529)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred hhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHH
Confidence 44555556677788899999999999998754321111 0 11233445566677788888889999988877776555
Q ss_pred HHHHH-----HhhhhcCCCHHHHHHHHHHHHhCCCCChh
Q 006558 345 ELAKR-----ASDIVHTFQEQELAQVLWAFASLYEPADP 378 (640)
Q Consensus 345 aLa~~-----v~~~l~~f~~QeLsniLWAfA~L~~~~~~ 378 (640)
.+... +...+..-++.--...+|+++.+-.....
T Consensus 330 ~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~ 368 (529)
T 3tpo_A 330 KVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQD 368 (529)
T ss_dssp HHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHH
T ss_pred HHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHH
Confidence 54432 34455666666667888999887655443
No 17
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=46.14 E-value=1.7e+02 Score=26.46 Aligned_cols=108 Identities=15% Similarity=0.204 Sum_probs=72.1
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHHHhCCCcC-CHHHHH--HHHHHHHhhhCCCCHHHHHHHHHHHHHCCCCCHHHHHHHH
Q 006558 271 VAIAMTALPECSAQGISNIAWALSKIGGELL-YLSEMD--RVAEVALTKVGEFNSQNVANVAGAFASMQHSAPDLFSELA 347 (640)
Q Consensus 271 ~~~a~~~l~~~~pq~LsnilWAlAkLg~~~~-~~~el~--aLa~~a~~~i~~fspQ~LAnilwAlAkL~~~~~~L~~aLa 347 (640)
+......+..-++.-....+|+++.+..... ....+- .....+...+..-++.-..+.+|+++.+-..++.....+.
T Consensus 56 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 135 (210)
T 4db6_A 56 LPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI 135 (210)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3344455566688888999999999974321 111110 1223455667777888899999999999988776554433
Q ss_pred -----HHHhhhhcCCCHHHHHHHHHHHHhCCCCChh
Q 006558 348 -----KRASDIVHTFQEQELAQVLWAFASLYEPADP 378 (640)
Q Consensus 348 -----~~v~~~l~~f~~QeLsniLWAfA~L~~~~~~ 378 (640)
..+...+..-++.-....+|+++.+-...+.
T Consensus 136 ~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~ 171 (210)
T 4db6_A 136 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171 (210)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHH
T ss_pred HcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcH
Confidence 3455666666777888888999888665443
No 18
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=45.78 E-value=1.9e+02 Score=26.93 Aligned_cols=108 Identities=16% Similarity=0.210 Sum_probs=72.9
Q ss_pred HHHHhhCCCCCHHHHHHHHHHHHHhCCCcC-CHHHH-H-HHHHHHHhhhCCCCHHHHHHHHHHHHHCCCCCHHHHHH---
Q 006558 272 AIAMTALPECSAQGISNIAWALSKIGGELL-YLSEM-D-RVAEVALTKVGEFNSQNVANVAGAFASMQHSAPDLFSE--- 345 (640)
Q Consensus 272 ~~a~~~l~~~~pq~LsnilWAlAkLg~~~~-~~~el-~-aLa~~a~~~i~~fspQ~LAnilwAlAkL~~~~~~L~~a--- 345 (640)
......+..-++.-....+|+++.+..... ....+ + .....+...+..-++.-..+.+|+++.+...++.....
T Consensus 57 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 136 (252)
T 4db8_A 57 PALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID 136 (252)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHH
Confidence 334445555668888999999999986322 11111 1 12334455666678888899999999998887654333
Q ss_pred --HHHHHhhhhcCCCHHHHHHHHHHHHhCCCCChhH
Q 006558 346 --LAKRASDIVHTFQEQELAQVLWAFASLYEPADPL 379 (640)
Q Consensus 346 --La~~v~~~l~~f~~QeLsniLWAfA~L~~~~~~L 379 (640)
+...+...+..-++.-....+|+++.+-..++..
T Consensus 137 ~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 172 (252)
T 4db8_A 137 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 172 (252)
T ss_dssp TTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHH
Confidence 3345566677778888899999999998765443
No 19
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=44.95 E-value=1.9e+02 Score=26.65 Aligned_cols=109 Identities=14% Similarity=0.145 Sum_probs=74.2
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHHHhCCCcC-CHHHH--HHHHHHHHhhhCCCCHHHHHHHHHHHHHCCCCCHHHHHHH-
Q 006558 271 VAIAMTALPECSAQGISNIAWALSKIGGELL-YLSEM--DRVAEVALTKVGEFNSQNVANVAGAFASMQHSAPDLFSEL- 346 (640)
Q Consensus 271 ~~~a~~~l~~~~pq~LsnilWAlAkLg~~~~-~~~el--~aLa~~a~~~i~~fspQ~LAnilwAlAkL~~~~~~L~~aL- 346 (640)
+......+..-++.-..+.+|+++.+..... ....+ ......+...+..-++.-..+.+|+++.+...+++....+
T Consensus 46 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 125 (252)
T 4hxt_A 46 VEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV 125 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3334455566678888999999999987522 11111 0123344556666678889999999999997777655443
Q ss_pred ----HHHHhhhhcCCCHHHHHHHHHHHHhCCCCChhH
Q 006558 347 ----AKRASDIVHTFQEQELAQVLWAFASLYEPADPL 379 (640)
Q Consensus 347 ----a~~v~~~l~~f~~QeLsniLWAfA~L~~~~~~L 379 (640)
...+...+..-++.-....+|+++.+-..++..
T Consensus 126 ~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~ 162 (252)
T 4hxt_A 126 DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA 162 (252)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 344556677778888899999999987765443
No 20
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=38.51 E-value=3.3e+02 Score=27.61 Aligned_cols=108 Identities=9% Similarity=0.067 Sum_probs=70.0
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHHHhCCCcCCH-HHH--HHHHHHHHhhhCCCCHHHHHHHHHHHHHCCCCCHHHHHH--
Q 006558 271 VAIAMTALPECSAQGISNIAWALSKIGGELLYL-SEM--DRVAEVALTKVGEFNSQNVANVAGAFASMQHSAPDLFSE-- 345 (640)
Q Consensus 271 ~~~a~~~l~~~~pq~LsnilWAlAkLg~~~~~~-~el--~aLa~~a~~~i~~fspQ~LAnilwAlAkL~~~~~~L~~a-- 345 (640)
+......+..-++.-..+.+|+++.+....... ..+ ..+...+...+..-++.-....+|+++.+...++.....
T Consensus 194 l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 273 (450)
T 2jdq_A 194 LNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVIL 273 (450)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHH
Confidence 333334455667888899999999997643210 011 112334445555667777889999999998887654433
Q ss_pred ---HHHHHhhhhcCCCHHHHHHHHHHHHhCCCCChh
Q 006558 346 ---LAKRASDIVHTFQEQELAQVLWAFASLYEPADP 378 (640)
Q Consensus 346 ---La~~v~~~l~~f~~QeLsniLWAfA~L~~~~~~ 378 (640)
+...+...+..-++.--...+|+++.+......
T Consensus 274 ~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~ 309 (450)
T 2jdq_A 274 NCSALQSLLHLLSSPKESIKKEACWTISNITAGNRA 309 (450)
T ss_dssp TTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHH
T ss_pred HCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH
Confidence 334455666666777788899999998765443
No 21
>1y14_A B32, RPB4, DNA-directed RNA polymerase II 32 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: a.60.8.2
Probab=36.45 E-value=10 Score=36.33 Aligned_cols=9 Identities=56% Similarity=0.722 Sum_probs=2.4
Q ss_pred chhhhhhhh
Q 006558 168 MFEEKREKT 176 (640)
Q Consensus 168 ~~~~~~~~~ 176 (640)
|+.+-|++.
T Consensus 80 ~~~~~~~~~ 88 (187)
T 1y14_A 80 MHSETREKE 88 (187)
T ss_dssp ----CHHHH
T ss_pred hccchhhhh
Confidence 444444444
No 22
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=35.59 E-value=1.3e+02 Score=30.23 Aligned_cols=105 Identities=15% Similarity=0.075 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhCC-CcCCHHHHHH--HHHHHHhhhCCCCHHHHHHHHHHHHHCCCCCHH
Q 006558 265 REMSMLVAIAMTALPECSAQGISNIAWALSKIGG-ELLYLSEMDR--VAEVALTKVGEFNSQNVANVAGAFASMQHSAPD 341 (640)
Q Consensus 265 ~~~~~L~~~a~~~l~~~~pq~LsnilWAlAkLg~-~~~~~~el~a--La~~a~~~i~~fspQ~LAnilwAlAkL~~~~~~ 341 (640)
..+..|+..... .-++.-..+.+||++.+-. .+.....+.. ....+...+..-++.-....+|+++.+-..+++
T Consensus 124 g~l~~Ll~LL~~---~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~ 200 (296)
T 1xqr_A 124 GALRKLLRLLDR---DACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPE 200 (296)
T ss_dssp THHHHHHHHHHH---CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGG
T ss_pred CCHHHHHHHHcc---CCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChH
Confidence 345566665543 2356677899999998842 2221111110 112233334445677778888888877443443
Q ss_pred HHHHHH-----HHHhhhhcCCCHHHHHHHHHHHHhC
Q 006558 342 LFSELA-----KRASDIVHTFQEQELAQVLWAFASL 372 (640)
Q Consensus 342 L~~aLa-----~~v~~~l~~f~~QeLsniLWAfA~L 372 (640)
.-..+. ..+...+..-+++-....+++++.+
T Consensus 201 ~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l 236 (296)
T 1xqr_A 201 HKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSL 236 (296)
T ss_dssp GHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHH
Confidence 333322 2233334433444444444444443
No 23
>3hou_D DNA-directed RNA polymerase II subunit RPB4; RNA polymerase II, metal-binding, transcription bubble; HET: BRU; 3.20A {Saccharomyces cerevisiae} PDB: 1nt9_D 1y1w_D 1y1y_D 1y77_D* 2b63_D* 2b8k_D 2ja5_D* 2ja6_D* 2ja7_D* 2ja8_D* 2r7z_D 2r92_D 2r93_D 1y1v_D* 3fki_D 3h3v_E 2vum_D* 3hov_D* 3how_D* 3hox_D* ...
Probab=35.27 E-value=24 Score=34.34 Aligned_cols=10 Identities=50% Similarity=0.381 Sum_probs=4.4
Q ss_pred HHHhHHhhCc
Q 006558 88 ALKSIEARGL 97 (640)
Q Consensus 88 ~~~~~~~~~~ 97 (640)
||.-=|||=|
T Consensus 49 alnlsearl~ 58 (221)
T 3hou_D 49 ALNLSEARLV 58 (221)
T ss_dssp BCCTTHHHHH
T ss_pred hhhhHHHHHH
Confidence 3444455443
No 24
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=33.53 E-value=2.7e+02 Score=25.07 Aligned_cols=105 Identities=13% Similarity=0.144 Sum_probs=72.0
Q ss_pred hhCCCCCHHHHHHHHHHHHHhCCCcCCH-HHHH--HHHHHHHhhhCCCCHHHHHHHHHHHHHCCCCCHHHHHHHH-----
Q 006558 276 TALPECSAQGISNIAWALSKIGGELLYL-SEMD--RVAEVALTKVGEFNSQNVANVAGAFASMQHSAPDLFSELA----- 347 (640)
Q Consensus 276 ~~l~~~~pq~LsnilWAlAkLg~~~~~~-~el~--aLa~~a~~~i~~fspQ~LAnilwAlAkL~~~~~~L~~aLa----- 347 (640)
..+..=++.-..+.+|+++.+....... ..+- .+...+...+..-++.-....+|+++.+-..++..-..+.
T Consensus 19 ~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i 98 (210)
T 4db6_A 19 QQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGAL 98 (210)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCH
Confidence 3445567788889999999987432211 1110 1234455666777888889999999999887776555444
Q ss_pred HHHhhhhcCCCHHHHHHHHHHHHhCCCCChhHH
Q 006558 348 KRASDIVHTFQEQELAQVLWAFASLYEPADPLL 380 (640)
Q Consensus 348 ~~v~~~l~~f~~QeLsniLWAfA~L~~~~~~Ll 380 (640)
..+...+..-++.-....+|+++.+-...+...
T Consensus 99 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 131 (210)
T 4db6_A 99 PALVQLLSSPNEQILQEALWALSNIASGGNEQI 131 (210)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHH
Confidence 345667777788888999999999876655443
No 25
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=32.33 E-value=3.2e+02 Score=27.33 Aligned_cols=97 Identities=6% Similarity=-0.041 Sum_probs=58.5
Q ss_pred hCCCCCHHHHHHHHHHHHHhCCCcC-CHHH-HH-HHHHHHHhhhC-CCCHHHHHHHHHHHHHCCCCCHHHHHHHH-----
Q 006558 277 ALPECSAQGISNIAWALSKIGGELL-YLSE-MD-RVAEVALTKVG-EFNSQNVANVAGAFASMQHSAPDLFSELA----- 347 (640)
Q Consensus 277 ~l~~~~pq~LsnilWAlAkLg~~~~-~~~e-l~-aLa~~a~~~i~-~fspQ~LAnilwAlAkL~~~~~~L~~aLa----- 347 (640)
.+..-++.-....+|+++.+-...+ .... ++ .....++..+. ..++.-..+.+||++.+-..++.....+.
T Consensus 90 lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi 169 (296)
T 1xqr_A 90 YLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGF 169 (296)
T ss_dssp TTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCH
Confidence 5667778778899999999854321 1111 00 01112223333 34567788999999998555444333222
Q ss_pred HHHhhhhcCCCHHHHHHHHHHHHhCC
Q 006558 348 KRASDIVHTFQEQELAQVLWAFASLY 373 (640)
Q Consensus 348 ~~v~~~l~~f~~QeLsniLWAfA~L~ 373 (640)
..+...+..-++.-....+|+++.+-
T Consensus 170 ~~L~~lL~~~d~~v~~~A~~aLs~L~ 195 (296)
T 1xqr_A 170 SVLMRAMQQQVQKLKVKSAFLLQNLL 195 (296)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 23445555567777888899998874
No 26
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=30.21 E-value=4.4e+02 Score=26.61 Aligned_cols=105 Identities=12% Similarity=0.134 Sum_probs=66.6
Q ss_pred HHhhCC-CCCHHHHHHHHHHHHHhCCCc-CC--HHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHCCCCCHHHHHHH---
Q 006558 274 AMTALP-ECSAQGISNIAWALSKIGGEL-LY--LSEMDRVAEVALTKVGEFNSQNVANVAGAFASMQHSAPDLFSEL--- 346 (640)
Q Consensus 274 a~~~l~-~~~pq~LsnilWAlAkLg~~~-~~--~~el~aLa~~a~~~i~~fspQ~LAnilwAlAkL~~~~~~L~~aL--- 346 (640)
....+. .-++.-..+.+|+++.+.... +. ...+..+...+...+..-++.-..+.+|+++.+....++....+
T Consensus 154 L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 233 (450)
T 2jdq_A 154 LLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDA 233 (450)
T ss_dssp HHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHT
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHc
Confidence 334444 356777889999999886432 11 00112233334445566678888999999999987765544332
Q ss_pred --HHHHhhhhcCCCHHHHHHHHHHHHhCCCCChh
Q 006558 347 --AKRASDIVHTFQEQELAQVLWAFASLYEPADP 378 (640)
Q Consensus 347 --a~~v~~~l~~f~~QeLsniLWAfA~L~~~~~~ 378 (640)
...+...+..-++.-....+|+++.+....+.
T Consensus 234 ~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 267 (450)
T 2jdq_A 234 GVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDI 267 (450)
T ss_dssp TTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred CcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChH
Confidence 33445555666677778888999888766543
No 27
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=29.11 E-value=5.4e+02 Score=27.97 Aligned_cols=105 Identities=10% Similarity=0.054 Sum_probs=75.6
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHHHHHHhCCCcCC---HHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHCCCCCHHHHHH
Q 006558 269 MLVAIAMTALPECSAQGISNIAWALSKIGGELLY---LSEMDRVAEVALTKVGEFNSQNVANVAGAFASMQHSAPDLFSE 345 (640)
Q Consensus 269 ~L~~~a~~~l~~~~pq~LsnilWAlAkLg~~~~~---~~el~aLa~~a~~~i~~fspQ~LAnilwAlAkL~~~~~~L~~a 345 (640)
.++......+.+-++.-..+.++++..+....+. ..........++..+...+|-.-..++-.++++.-.++.....
T Consensus 160 ~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~ 239 (591)
T 2vgl_B 160 GFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQS 239 (591)
T ss_dssp HHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHH
T ss_pred cHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHH
Confidence 4666777778888999999999999999865321 1001122223333445577877788888999998777777777
Q ss_pred HHHHHhhhhcCCCHHHHHHHHHHHHhCC
Q 006558 346 LAKRASDIVHTFQEQELAQVLWAFASLY 373 (640)
Q Consensus 346 La~~v~~~l~~f~~QeLsniLWAfA~L~ 373 (640)
+...+...+.+-++.-+...++++..+.
T Consensus 240 ~l~~l~~~l~~~~~~V~~ea~~~i~~l~ 267 (591)
T 2vgl_B 240 ICERVTPRLSHANSAVVLSAVKVLMKFL 267 (591)
T ss_dssp HHHHHTTCSCSSTTHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHh
Confidence 7777777888888888888888888875
No 28
>3hou_D DNA-directed RNA polymerase II subunit RPB4; RNA polymerase II, metal-binding, transcription bubble; HET: BRU; 3.20A {Saccharomyces cerevisiae} PDB: 1nt9_D 1y1w_D 1y1y_D 1y77_D* 2b63_D* 2b8k_D 2ja5_D* 2ja6_D* 2ja7_D* 2ja8_D* 2r7z_D 2r92_D 2r93_D 1y1v_D* 3fki_D 3h3v_E 2vum_D* 3hov_D* 3how_D* 3hox_D* ...
Probab=23.63 E-value=1.3e+02 Score=29.40 Aligned_cols=11 Identities=55% Similarity=0.785 Sum_probs=3.9
Q ss_pred chhhhhhhhHH
Q 006558 168 MFEEKREKTIE 178 (640)
Q Consensus 168 ~~~~~~~~~~~ 178 (640)
|+.+-||+-.+
T Consensus 114 ~~~~~~e~e~~ 124 (221)
T 3hou_D 114 MHSETREKELE 124 (221)
T ss_dssp ----CTHHHHH
T ss_pred hhccchHHHHH
Confidence 45555666543
No 29
>2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION binding, hydrolase; 2.50A {Homo sapiens} PDB: 2rpz_A
Probab=23.19 E-value=73 Score=30.36 Aligned_cols=38 Identities=24% Similarity=0.457 Sum_probs=28.1
Q ss_pred HHHHHHHcCCEEEEEchhH---------------------HhhhCChHHHHHHHHHHHHHHh
Q 006558 583 KRRYIAAAGWNVVSLSHQE---------------------WEELQGSFEQLDYLRVILKDYI 623 (640)
Q Consensus 583 K~RlL~~~Gw~VV~VPy~E---------------------W~~L~~~~er~~YLr~kL~~~l 623 (640)
=.+.|+..|-.|..+++.| |..+ .++.+||.++|...+
T Consensus 131 g~~~L~~aGI~V~~~~~~e~~~~w~~fv~~~~~~~~pf~~W~~l---~~~~~y~~~~L~~il 189 (190)
T 2nyt_A 131 ALKKLKEAGCKLRIMKPQDFEYVWQNFVEQEEGESKAFQPWEDI---QENFLYYEEKLADIL 189 (190)
T ss_pred HHHHHHHCCCEEEEecHHHHHHHHHHHHHccCCcCCccHhHHhc---hHhHHHHHHHHHHHh
Confidence 3467888999988875544 4433 358999999999775
No 30
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=23.02 E-value=7.4e+02 Score=26.80 Aligned_cols=125 Identities=14% Similarity=0.089 Sum_probs=79.7
Q ss_pred CCChhhHHHHHHHHHhccccchhhhhhhhhhhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhCCC-cCCHHHHHHH
Q 006558 231 PLSPLNIATALHRIAKNMEKVSMMTTHRLAFTRQREMSMLVAIAMTALPECSAQGISNIAWALSKIGGE-LLYLSEMDRV 309 (640)
Q Consensus 231 ~fn~vn~aTALhRLAk~~~~~~~~~~rr~~~ar~~~~~~L~~~a~~~l~~~~pq~LsnilWAlAkLg~~-~~~~~el~aL 309 (640)
.=|+.--+.||..|+..... .....|+..+...+.+-+|.==...++++.++... |.... -..+
T Consensus 97 ~~n~~ir~~AL~~L~~i~~~--------------~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~-~~~~ 161 (591)
T 2vgl_B 97 DPNPLIRALAVRTMGCIRVD--------------KITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVE-DQGF 161 (591)
T ss_dssp SSSHHHHHHHHHHHHTCCSG--------------GGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHH-HHHH
T ss_pred CCCHHHHHHHHHHHHcCChH--------------HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcc-cccH
Confidence 45777778889999887432 12234556666777777887778889999888532 22211 1235
Q ss_pred HHHHHhhhCCCCHHHHHHHHHHHHHCCCCCH---------HHHHHHHHHHhhhhcCCCHHHHHHHHHHHHhCCC
Q 006558 310 AEVALTKVGEFNSQNVANVAGAFASMQHSAP---------DLFSELAKRASDIVHTFQEQELAQVLWAFASLYE 374 (640)
Q Consensus 310 a~~a~~~i~~fspQ~LAnilwAlAkL~~~~~---------~L~~aLa~~v~~~l~~f~~QeLsniLWAfA~L~~ 374 (640)
...+...+..-++.-..+.+++|..+...++ ..+..+.. .+.+.++..-..++-.++++.-
T Consensus 162 ~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~----~l~~~~~~~q~~il~~l~~l~~ 231 (591)
T 2vgl_B 162 LDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLT----ALNECTEWGQIFILDCLSNYNP 231 (591)
T ss_dssp HHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHH----HHHHCCHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHH----cCCCCCchHHHHHHHHHHHhCC
Confidence 5566667777888889999999999876554 23433333 3334555555566666666553
No 31
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=21.67 E-value=4.2e+02 Score=27.12 Aligned_cols=129 Identities=12% Similarity=0.100 Sum_probs=72.3
Q ss_pred hhHHHHHHHHHhccccchhhhhhhhhhh-hhHHHHHHHHHHHhhCCCCCH----HHHHHHHHHHHHhCC----CcCCHHH
Q 006558 235 LNIATALHRIAKNMEKVSMMTTHRLAFT-RQREMSMLVAIAMTALPECSA----QGISNIAWALSKIGG----ELLYLSE 305 (640)
Q Consensus 235 vn~aTALhRLAk~~~~~~~~~~rr~~~a-r~~~~~~L~~~a~~~l~~~~p----q~LsnilWAlAkLg~----~~~~~~e 305 (640)
.+++.||+-|+.+.... +..+. ....+..|+... ..-++ .-..+.+|++..+.. .+.....
T Consensus 189 ~~A~~aL~nLs~~~~~n------k~~i~~~~Gai~~Lv~lL----~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~ 258 (354)
T 3nmw_A 189 KSVLSALWNLSAHCTEN------KADICAVDGALAFLVGTL----TYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQI 258 (354)
T ss_dssp HHHHHHHHHHHTTCHHH------HHHHHHSTTHHHHHHHHT----TCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHccChhh------hHHHHHhcCcHHHHHHHh----ccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHH
Confidence 36778888888753221 11111 222344454444 22222 235667777776652 2211111
Q ss_pred HH--HHHHHHHhhhCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHH-----HhhhhcCCCHHHHHHHHHHHHhCC
Q 006558 306 MD--RVAEVALTKVGEFNSQNVANVAGAFASMQHSAPDLFSELAKR-----ASDIVHTFQEQELAQVLWAFASLY 373 (640)
Q Consensus 306 l~--aLa~~a~~~i~~fspQ~LAnilwAlAkL~~~~~~L~~aLa~~-----v~~~l~~f~~QeLsniLWAfA~L~ 373 (640)
+. .....++..+..-+..-..+.+|+++.+-..+++--..+.+. +...+..-++.-.-+.+||+..+-
T Consensus 259 i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~ 333 (354)
T 3nmw_A 259 LRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLM 333 (354)
T ss_dssp HHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 10 122334556667778888999999999987777665555442 344555556666677778877764
No 32
>3tj5_B Metavinculin, SCA-family protein; cytoskeleton, epidemic typhus, spotted fever, alpha-HE bundle domain, protein-protein interactions; 1.99A {Rickettsia rickettsii}
Probab=21.67 E-value=22 Score=23.00 Aligned_cols=14 Identities=36% Similarity=0.479 Sum_probs=11.7
Q ss_pred hhCcchhHHHhhhh
Q 006558 94 ARGLASSMEDLIKV 107 (640)
Q Consensus 94 ~~~~~~~~~~~~~~ 107 (640)
|-+||.+||++++-
T Consensus 10 A~~LS~sMQdLLn~ 23 (27)
T 3tj5_B 10 ATALSGSMQYLLNY 23 (27)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 56899999999863
No 33
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=21.62 E-value=4.6e+02 Score=23.85 Aligned_cols=104 Identities=13% Similarity=0.138 Sum_probs=69.7
Q ss_pred hhCCCCCHHHHHHHHHHHHHhCCCcC-CHHHH--HHHHHHHHhhhCCCCHHHHHHHHHHHHHCCCCCHHHHHHHH-----
Q 006558 276 TALPECSAQGISNIAWALSKIGGELL-YLSEM--DRVAEVALTKVGEFNSQNVANVAGAFASMQHSAPDLFSELA----- 347 (640)
Q Consensus 276 ~~l~~~~pq~LsnilWAlAkLg~~~~-~~~el--~aLa~~a~~~i~~fspQ~LAnilwAlAkL~~~~~~L~~aLa----- 347 (640)
..+..-++.-....+|+++.+..... ....+ ..+...+...+..-++.-..+.+|+++.+...+++.-..+.
T Consensus 9 ~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i 88 (252)
T 4hxt_A 9 KLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGV 88 (252)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCH
Confidence 44455567777888999988865432 11111 01334445566667788889999999999988776555443
Q ss_pred HHHhhhhcCCCHHHHHHHHHHHHhCCCCChhH
Q 006558 348 KRASDIVHTFQEQELAQVLWAFASLYEPADPL 379 (640)
Q Consensus 348 ~~v~~~l~~f~~QeLsniLWAfA~L~~~~~~L 379 (640)
..+...+..-++.-..+.+|+++.+-...+..
T Consensus 89 ~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 120 (252)
T 4hxt_A 89 EVLVKLLTSTDSEVQKEAARALANIASGPDEA 120 (252)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 34556666677888889999999988655443
No 34
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=21.00 E-value=16 Score=33.39 Aligned_cols=10 Identities=20% Similarity=0.507 Sum_probs=1.7
Q ss_pred ceeccccCCc
Q 006558 19 IRIRRVTEDD 28 (640)
Q Consensus 19 ~~~~~~~~~~ 28 (640)
-||+|+..-|
T Consensus 23 aRIKrIMK~d 32 (140)
T 2byk_A 23 SRVRTIMKSS 32 (140)
T ss_dssp ------CCSS
T ss_pred HHHHHHHhcC
Confidence 3555554433
No 35
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=20.81 E-value=4.6e+02 Score=29.71 Aligned_cols=123 Identities=11% Similarity=0.015 Sum_probs=78.0
Q ss_pred hHHHHHHHHHhccccchhhhhhhhhhhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhCCCcCCH--HHHHHHHHHH
Q 006558 236 NIATALHRIAKNMEKVSMMTTHRLAFTRQREMSMLVAIAMTALPECSAQGISNIAWALSKIGGELLYL--SEMDRVAEVA 313 (640)
Q Consensus 236 n~aTALhRLAk~~~~~~~~~~rr~~~ar~~~~~~L~~~a~~~l~~~~pq~LsnilWAlAkLg~~~~~~--~el~aLa~~a 313 (640)
..+.+|.+|+..... ..+..++..+...+.+-+++.-...+|+++.+....... +.+..+...+
T Consensus 340 ~a~~~L~~la~~~~~--------------~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l 405 (852)
T 4fdd_A 340 CSAAALDVLANVYRD--------------ELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHL 405 (852)
T ss_dssp HHHHHHHHHHHHHGG--------------GGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHH
T ss_pred HHHHHHHHHHHhccH--------------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 355677777765321 123345555555555567888888999999987432110 1134555666
Q ss_pred HhhhCCCCHHHHHHHHHHHHHCCCC-----CHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHhC
Q 006558 314 LTKVGEFNSQNVANVAGAFASMQHS-----APDLFSELAKRASDIVHTFQEQELAQVLWAFASL 372 (640)
Q Consensus 314 ~~~i~~fspQ~LAnilwAlAkL~~~-----~~~L~~aLa~~v~~~l~~f~~QeLsniLWAfA~L 372 (640)
...+..=++.--..++|+++++... ....+..+...+...+.+-++.--.+.+||++.+
T Consensus 406 ~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l 469 (852)
T 4fdd_A 406 IQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATL 469 (852)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 6667666777777799999887632 2234555566666666666788888888888876
Done!