BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006560
(640 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CWW|A Chain A, Crystal Structure Of Ide-Bradykinin Complex
pdb|3CWW|B Chain B, Crystal Structure Of Ide-Bradykinin Complex
Length = 990
Score = 340 bits (873), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 210/646 (32%), Positives = 341/646 (52%), Gaps = 44/646 (6%)
Query: 10 FVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDD 69
F++++ LT+ GL + DII ++QYI+ LR PQ+W+F+EL+D+ + FRF +++
Sbjct: 344 FIINVDLTEEGLLHVEDIILHMFQYIQKLRAEGPQEWVFQELKDLNAVAFRFKDKERPRG 403
Query: 70 YAAELAGNLLIYPAEHVIYGEYMYEVWDEEMIKHLLGFFMPENMRIDVVSKSFAKSQDFH 129
Y +++AG L YP E V+ EY+ E + ++I+ +L PEN+R+ +VSKSF D
Sbjct: 404 YTSKIAGILHYYPLEEVLTAEYLLEEFRPDLIEMVLDKLRPENVRVAIVSKSFEGKTD-R 462
Query: 130 YEPWFGSRYTEEDISPSLMELWRNPPEIDVSLQLPSQNEFIPTDFSIRANDISNDLVTVT 189
E W+G++Y +E I +++ W+N ++ +LP++NEFIPT+F I + +
Sbjct: 463 TEEWYGTQYKQEAIPDAVIAKWQN-AALNGKFKLPTKNEFIPTNFEI----LPLEAAATP 517
Query: 190 SPTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELNE 249
P I D + + W+K D+ F LP+AN F Y + + + L++ LLKD LNE
Sbjct: 518 YPALIKDTAMSKLWFKQDDKFFLPKANLNFEFFSPFAYVDPLHSNMAYLYLELLKDSLNE 577
Query: 250 IIYQASVAKLETSVSIFSDKLELKVYGFNDKLPVLLSKILAIAKSFLPSDDRFKVIKEDV 309
Y A +A L + + L V G+NDK P+LL KI+ +F + RF++IKE
Sbjct: 578 YAYAAELAGLSYDLQNTIYGMYLSVKGYNDKQPILLKKIIEKMATFEIDEARFEIIKEAY 637
Query: 310 VRTLKNTNM-KPLSHSSYLRLQVLCQSFYDVDEKLSILHGLSLADLMAFIPELRSQLYIE 368
+R+L N +P H+ Y ++ + + DE L ++L L AFIP+L S+L+IE
Sbjct: 638 MRSLNNFRAEQPHQHAMYYLRLLMTEVAWTKDELKEALADVTLPRLKAFIPQLLSRLHIE 697
Query: 369 GLCHGNLSQEEAIHISNIFKSIFSVQPLPIEMRHQECVICLPSGANLVRNVSV------- 421
L HGN++++ A+ I + + + H LPS R V +
Sbjct: 698 ALLHGNITKQAALGIMQMVEDTL--------IEHAHTKPLLPSQLAAYREVQLPDRGWFV 749
Query: 422 ---KNKCETNSVIELYFQIEQEKGMELTRLKALIDLFDEILEEPFFNQLRTKEQLGYVVE 478
+N+ NS IE+Y+Q + M+ T ++LF +I+ EP FN LRTKEQLGY+V
Sbjct: 750 YQQRNEVHNNSGIEIYYQTD----MQSTSENMFLELFAQIISEPAFNTLRTKEQLGYIVF 805
Query: 479 CSPRVTYRVFGFCFCIQSSKYNPIYLQERIDNFISXXXXXXXXXXXXSFENYRSGLMAKL 538
PR + G F IQS K P YL+ R++ F+ +F+ + L +
Sbjct: 806 SGPRRANGIQGLRFIIQSEK-PPHYLESRVEAFLITMEKSIEDMTEEAFQKHIQALAIRR 864
Query: 539 LEKDPSLTYESNRFWNQITDKRYMFDQSQKEAEDLKSIKKNDVISWYKTYLQQWSPKCRR 598
L+K L+ ES ++W +I ++Y FD+ E LK++ K D+I +YK L +P+ +
Sbjct: 865 LDKPKKLSAESAKYWGEIISQQYNFDRDNTEVAYLKTLTKADIIKFYKEMLAVDAPRRHK 924
Query: 599 LAVRVWG----CNTNIKESEKHSKSAL----------VIKDLTAFK 630
++V V N + E + L VI+++TAFK
Sbjct: 925 VSVHVLAREMDSNPVVGEFPAQNDINLSQAPALPQPEVIQNMTAFK 970
>pdb|2WBY|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Insulin
pdb|2WBY|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Insulin
pdb|2WC0|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Iodinated Insulin
pdb|2WC0|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Iodinated Insulin
pdb|3H44|A Chain A, Crystal Structure Of Insulin Degrading Enzyme In Complex
With Macrophage Inflammatory Protein 1 Alpha
pdb|3H44|B Chain B, Crystal Structure Of Insulin Degrading Enzyme In Complex
With Macrophage Inflammatory Protein 1 Alpha
pdb|3OFI|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Ubiquitin
pdb|3OFI|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Ubiquitin
pdb|3N56|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human B-Type Natriuretic Peptide (Bnp)
pdb|3N56|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human B-Type Natriuretic Peptide (Bnp)
pdb|3N57|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human Atrial Natriuretic Peptide (Anp)
pdb|3N57|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human Atrial Natriuretic Peptide (Anp)
pdb|2YPU|A Chain A, Human Insulin Degrading Enzyme E111q In Complex With
Inhibitor Compound 41367
pdb|2YPU|B Chain B, Human Insulin Degrading Enzyme E111q In Complex With
Inhibitor Compound 41367
Length = 990
Score = 338 bits (866), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 201/605 (33%), Positives = 328/605 (54%), Gaps = 30/605 (4%)
Query: 10 FVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDD 69
F++++ LT+ GL + DII ++QYI+ LR PQ+W+F+EL+D+ + FRF +++
Sbjct: 344 FIINVDLTEEGLLHVEDIILHMFQYIQKLRAEGPQEWVFQELKDLNAVAFRFKDKERPRG 403
Query: 70 YAAELAGNLLIYPAEHVIYGEYMYEVWDEEMIKHLLGFFMPENMRIDVVSKSFAKSQDFH 129
Y +++AG L YP E V+ EY+ E + ++I+ +L PEN+R+ +VSKSF D
Sbjct: 404 YTSKIAGILHYYPLEEVLTAEYLLEEFRPDLIEMVLDKLRPENVRVAIVSKSFEGKTD-R 462
Query: 130 YEPWFGSRYTEEDISPSLMELWRNPPEIDVSLQLPSQNEFIPTDFSIRANDISNDLVTVT 189
E W+G++Y +E I +++ W+N +++ +LP++NEFIPT+F I + +
Sbjct: 463 TEEWYGTQYKQEAIPDEVIKKWQN-ADLNGKFKLPTKNEFIPTNFEI----LPLEKEATP 517
Query: 190 SPTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELNE 249
P I D + + W+K D+ F LP+AN F Y + + + L++ LLKD LNE
Sbjct: 518 YPALIKDTAMSKLWFKQDDKFFLPKANLNFEFFSPFAYVDPLHSNMAYLYLELLKDSLNE 577
Query: 250 IIYQASVAKLETSVSIFSDKLELKVYGFNDKLPVLLSKILAIAKSFLPSDDRFKVIKEDV 309
Y A +A L + + L V G+NDK P+LL KI+ +F + RF++IKE
Sbjct: 578 YAYAAELAGLSYDLQNTIYGMYLSVKGYNDKQPILLKKIIEKMATFEIDEKRFEIIKEAY 637
Query: 310 VRTLKNTNM-KPLSHSSYLRLQVLCQSFYDVDEKLSILHGLSLADLMAFIPELRSQLYIE 368
+R+L N +P H+ Y ++ + + DE L ++L L AFIP+L S+L+IE
Sbjct: 638 MRSLNNFRAEQPHQHAMYYLRLLMTEVAWTKDELKEALDDVTLPRLKAFIPQLLSRLHIE 697
Query: 369 GLCHGNLSQEEAIHISNIFKSIFSVQPLPIEMRHQECVICLPSGANLVRNVSV------- 421
L HGN++++ A+ I + + + H LPS R V +
Sbjct: 698 ALLHGNITKQAALGIMQMVEDTL--------IEHAHTKPLLPSQLVRYREVQLPDRGWFV 749
Query: 422 ---KNKCETNSVIELYFQIEQEKGMELTRLKALIDLFDEILEEPFFNQLRTKEQLGYVVE 478
+N+ NS IE+Y+Q + M+ T ++LF +I+ EP FN LRTKEQLGY+V
Sbjct: 750 YQQRNEVHNNSGIEIYYQTD----MQSTSENMFLELFAQIISEPAFNTLRTKEQLGYIVF 805
Query: 479 CSPRVTYRVFGFCFCIQSSKYNPIYLQERIDNFISXXXXXXXXXXXXSFENYRSGLMAKL 538
PR + G F IQS K P YL+ R++ F+ +F+ + L +
Sbjct: 806 SGPRRANGIQGLRFIIQSEK-PPHYLESRVEAFLITMEKSIEDMTEEAFQKHIQALAIRR 864
Query: 539 LEKDPSLTYESNRFWNQITDKRYMFDQSQKEAEDLKSIKKNDVISWYKTYLQQWSPKCRR 598
L+K L+ ES ++W +I ++Y FD+ E LK++ K D+I +YK L +P+ +
Sbjct: 865 LDKPKKLSAESAKYWGEIISQQYNFDRDNTEVAYLKTLTKEDIIKFYKEMLAVDAPRRHK 924
Query: 599 LAVRV 603
++V V
Sbjct: 925 VSVHV 929
>pdb|3QZ2|A Chain A, The Structure Of Cysteine-Free Human Insulin Degrading
Enzyme
pdb|3QZ2|B Chain B, The Structure Of Cysteine-Free Human Insulin Degrading
Enzyme
pdb|4DTT|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme (ide)
In Complex With Compund 41367
pdb|4DTT|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme (ide)
In Complex With Compund 41367
Length = 990
Score = 337 bits (865), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 201/605 (33%), Positives = 328/605 (54%), Gaps = 30/605 (4%)
Query: 10 FVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDD 69
F++++ LT+ GL + DII ++QYI+ LR PQ+W+F+EL+D+ + FRF +++
Sbjct: 344 FIINVDLTEEGLLHVEDIILHMFQYIQKLRAEGPQEWVFQELKDLNAVAFRFKDKERPRG 403
Query: 70 YAAELAGNLLIYPAEHVIYGEYMYEVWDEEMIKHLLGFFMPENMRIDVVSKSFAKSQDFH 129
Y +++AG L YP E V+ EY+ E + ++I+ +L PEN+R+ +VSKSF D
Sbjct: 404 YTSKIAGILHYYPLEEVLTAEYLLEEFRPDLIEMVLDKLRPENVRVAIVSKSFEGKTD-R 462
Query: 130 YEPWFGSRYTEEDISPSLMELWRNPPEIDVSLQLPSQNEFIPTDFSIRANDISNDLVTVT 189
E W+G++Y +E I +++ W+N +++ +LP++NEFIPT+F I + +
Sbjct: 463 TEEWYGTQYKQEAIPDEVIKKWQN-ADLNGKFKLPTKNEFIPTNFEI----LPLEKEATP 517
Query: 190 SPTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELNE 249
P I D + + W+K D+ F LP+AN F Y + + + L++ LLKD LNE
Sbjct: 518 YPALIKDTAMSKLWFKQDDKFFLPKANLNFEFFSPFAYVDPLHSNMAYLYLELLKDSLNE 577
Query: 250 IIYQASVAKLETSVSIFSDKLELKVYGFNDKLPVLLSKILAIAKSFLPSDDRFKVIKEDV 309
Y A +A L + + L V G+NDK P+LL KI+ +F + RF++IKE
Sbjct: 578 YAYAAELAGLSYDLQNTIYGMYLSVKGYNDKQPILLKKIIEKMATFEIDEKRFEIIKEAY 637
Query: 310 VRTLKNTNM-KPLSHSSYLRLQVLCQSFYDVDEKLSILHGLSLADLMAFIPELRSQLYIE 368
+R+L N +P H+ Y ++ + + DE L ++L L AFIP+L S+L+IE
Sbjct: 638 MRSLNNFRAEQPHQHAMYYLRLLMTEVAWTKDELKEALDDVTLPRLKAFIPQLLSRLHIE 697
Query: 369 GLCHGNLSQEEAIHISNIFKSIFSVQPLPIEMRHQECVICLPSGANLVRNVSV------- 421
L HGN++++ A+ I + + + H LPS R V +
Sbjct: 698 ALLHGNITKQAALGIMQMVEDTL--------IEHAHTKPLLPSQLVRYREVQLPDRGWFV 749
Query: 422 ---KNKCETNSVIELYFQIEQEKGMELTRLKALIDLFDEILEEPFFNQLRTKEQLGYVVE 478
+N+ NS IE+Y+Q + M+ T ++LF +I+ EP FN LRTKEQLGY+V
Sbjct: 750 YQQRNEVHNNSGIEIYYQTD----MQSTSENMFLELFAQIISEPAFNTLRTKEQLGYIVF 805
Query: 479 CSPRVTYRVFGFCFCIQSSKYNPIYLQERIDNFISXXXXXXXXXXXXSFENYRSGLMAKL 538
PR + G F IQS K P YL+ R++ F+ +F+ + L +
Sbjct: 806 SGPRRANGIQGLRFIIQSEK-PPHYLESRVEAFLITMEKSIEDMTEEAFQKHIQALAIRR 864
Query: 539 LEKDPSLTYESNRFWNQITDKRYMFDQSQKEAEDLKSIKKNDVISWYKTYLQQWSPKCRR 598
L+K L+ ES ++W +I ++Y FD+ E LK++ K D+I +YK L +P+ +
Sbjct: 865 LDKPKKLSAESAKYWGEIISQQYNFDRDNTEVAYLKTLTKEDIIKFYKEMLAVDAPRRHK 924
Query: 599 LAVRV 603
++V V
Sbjct: 925 VSVHV 929
>pdb|3E4A|A Chain A, Human Ide-Inhibitor Complex At 2.6 Angstrom Resolution
pdb|3E4A|B Chain B, Human Ide-Inhibitor Complex At 2.6 Angstrom Resolution
pdb|2WK3|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-42)
pdb|2WK3|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-42)
Length = 1019
Score = 337 bits (865), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 201/605 (33%), Positives = 328/605 (54%), Gaps = 30/605 (4%)
Query: 10 FVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDD 69
F++++ LT+ GL + DII ++QYI+ LR PQ+W+F+EL+D+ + FRF +++
Sbjct: 373 FIINVDLTEEGLLHVEDIILHMFQYIQKLRAEGPQEWVFQELKDLNAVAFRFKDKERPRG 432
Query: 70 YAAELAGNLLIYPAEHVIYGEYMYEVWDEEMIKHLLGFFMPENMRIDVVSKSFAKSQDFH 129
Y +++AG L YP E V+ EY+ E + ++I+ +L PEN+R+ +VSKSF D
Sbjct: 433 YTSKIAGILHYYPLEEVLTAEYLLEEFRPDLIEMVLDKLRPENVRVAIVSKSFEGKTD-R 491
Query: 130 YEPWFGSRYTEEDISPSLMELWRNPPEIDVSLQLPSQNEFIPTDFSIRANDISNDLVTVT 189
E W+G++Y +E I +++ W+N +++ +LP++NEFIPT+F I + +
Sbjct: 492 TEEWYGTQYKQEAIPDEVIKKWQN-ADLNGKFKLPTKNEFIPTNFEI----LPLEKEATP 546
Query: 190 SPTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELNE 249
P I D + + W+K D+ F LP+AN F Y + + + L++ LLKD LNE
Sbjct: 547 YPALIKDTAMSKLWFKQDDKFFLPKANLNFEFFSPFAYVDPLHSNMAYLYLELLKDSLNE 606
Query: 250 IIYQASVAKLETSVSIFSDKLELKVYGFNDKLPVLLSKILAIAKSFLPSDDRFKVIKEDV 309
Y A +A L + + L V G+NDK P+LL KI+ +F + RF++IKE
Sbjct: 607 YAYAAELAGLSYDLQNTIYGMYLSVKGYNDKQPILLKKIIEKMATFEIDEKRFEIIKEAY 666
Query: 310 VRTLKNTNM-KPLSHSSYLRLQVLCQSFYDVDEKLSILHGLSLADLMAFIPELRSQLYIE 368
+R+L N +P H+ Y ++ + + DE L ++L L AFIP+L S+L+IE
Sbjct: 667 MRSLNNFRAEQPHQHAMYYLRLLMTEVAWTKDELKEALDDVTLPRLKAFIPQLLSRLHIE 726
Query: 369 GLCHGNLSQEEAIHISNIFKSIFSVQPLPIEMRHQECVICLPSGANLVRNVSV------- 421
L HGN++++ A+ I + + + H LPS R V +
Sbjct: 727 ALLHGNITKQAALGIMQMVEDTL--------IEHAHTKPLLPSQLVRYREVQLPDRGWFV 778
Query: 422 ---KNKCETNSVIELYFQIEQEKGMELTRLKALIDLFDEILEEPFFNQLRTKEQLGYVVE 478
+N+ NS IE+Y+Q + M+ T ++LF +I+ EP FN LRTKEQLGY+V
Sbjct: 779 YQQRNEVHNNSGIEIYYQTD----MQSTSENMFLELFAQIISEPAFNTLRTKEQLGYIVF 834
Query: 479 CSPRVTYRVFGFCFCIQSSKYNPIYLQERIDNFISXXXXXXXXXXXXSFENYRSGLMAKL 538
PR + G F IQS K P YL+ R++ F+ +F+ + L +
Sbjct: 835 SGPRRANGIQGLRFIIQSEK-PPHYLESRVEAFLITMEKSIEDMTEEAFQKHIQALAIRR 893
Query: 539 LEKDPSLTYESNRFWNQITDKRYMFDQSQKEAEDLKSIKKNDVISWYKTYLQQWSPKCRR 598
L+K L+ ES ++W +I ++Y FD+ E LK++ K D+I +YK L +P+ +
Sbjct: 894 LDKPKKLSAESAKYWGEIISQQYNFDRDNTEVAYLKTLTKEDIIKFYKEMLAVDAPRRHK 953
Query: 599 LAVRV 603
++V V
Sbjct: 954 VSVHV 958
>pdb|3HGZ|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
pdb|3HGZ|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
Length = 969
Score = 337 bits (865), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 201/605 (33%), Positives = 328/605 (54%), Gaps = 30/605 (4%)
Query: 10 FVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDD 69
F++++ LT+ GL + DII ++QYI+ LR PQ+W+F+EL+D+ + FRF +++
Sbjct: 331 FIINVDLTEEGLLHVEDIILHMFQYIQKLRAEGPQEWVFQELKDLNAVAFRFKDKERPRG 390
Query: 70 YAAELAGNLLIYPAEHVIYGEYMYEVWDEEMIKHLLGFFMPENMRIDVVSKSFAKSQDFH 129
Y +++AG L YP E V+ EY+ E + ++I+ +L PEN+R+ +VSKSF D
Sbjct: 391 YTSKIAGILHYYPLEEVLTAEYLLEEFRPDLIEMVLDKLRPENVRVAIVSKSFEGKTD-R 449
Query: 130 YEPWFGSRYTEEDISPSLMELWRNPPEIDVSLQLPSQNEFIPTDFSIRANDISNDLVTVT 189
E W+G++Y +E I +++ W+N +++ +LP++NEFIPT+F I + +
Sbjct: 450 TEEWYGTQYKQEAIPDEVIKKWQN-ADLNGKFKLPTKNEFIPTNFEI----LPLEKEATP 504
Query: 190 SPTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELNE 249
P I D + + W+K D+ F LP+AN F Y + + + L++ LLKD LNE
Sbjct: 505 YPALIKDTAMSKLWFKQDDKFFLPKANLNFEFFSPFAYVDPLHSNMAYLYLELLKDSLNE 564
Query: 250 IIYQASVAKLETSVSIFSDKLELKVYGFNDKLPVLLSKILAIAKSFLPSDDRFKVIKEDV 309
Y A +A L + + L V G+NDK P+LL KI+ +F + RF++IKE
Sbjct: 565 YAYAAELAGLSYDLQNTIYGMYLSVKGYNDKQPILLKKIIEKMATFEIDEKRFEIIKEAY 624
Query: 310 VRTLKNTNM-KPLSHSSYLRLQVLCQSFYDVDEKLSILHGLSLADLMAFIPELRSQLYIE 368
+R+L N +P H+ Y ++ + + DE L ++L L AFIP+L S+L+IE
Sbjct: 625 MRSLNNFRAEQPHQHAMYYLRLLMTEVAWTKDELKEALDDVTLPRLKAFIPQLLSRLHIE 684
Query: 369 GLCHGNLSQEEAIHISNIFKSIFSVQPLPIEMRHQECVICLPSGANLVRNVSV------- 421
L HGN++++ A+ I + + + H LPS R V +
Sbjct: 685 ALLHGNITKQAALGIMQMVEDTL--------IEHAHTKPLLPSQLVRYREVQLPDRGWFV 736
Query: 422 ---KNKCETNSVIELYFQIEQEKGMELTRLKALIDLFDEILEEPFFNQLRTKEQLGYVVE 478
+N+ NS IE+Y+Q + M+ T ++LF +I+ EP FN LRTKEQLGY+V
Sbjct: 737 YQQRNEVHNNSGIEIYYQTD----MQSTSENMFLELFAQIISEPAFNTLRTKEQLGYIVF 792
Query: 479 CSPRVTYRVFGFCFCIQSSKYNPIYLQERIDNFISXXXXXXXXXXXXSFENYRSGLMAKL 538
PR + G F IQS K P YL+ R++ F+ +F+ + L +
Sbjct: 793 SGPRRANGIQGLRFIIQSEK-PPHYLESRVEAFLITMEKSIEDMTEEAFQKHIQALAIRR 851
Query: 539 LEKDPSLTYESNRFWNQITDKRYMFDQSQKEAEDLKSIKKNDVISWYKTYLQQWSPKCRR 598
L+K L+ ES ++W +I ++Y FD+ E LK++ K D+I +YK L +P+ +
Sbjct: 852 LDKPKKLSAESAKYWGEIISQQYNFDRDNTEVAYLKTLTKEDIIKFYKEMLAVDAPRRHK 911
Query: 599 LAVRV 603
++V V
Sbjct: 912 VSVHV 916
>pdb|3E4Z|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Insulin-Like Growth Factor Ii
pdb|3E4Z|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Insulin-Like Growth Factor Ii
Length = 990
Score = 335 bits (858), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 208/646 (32%), Positives = 343/646 (53%), Gaps = 44/646 (6%)
Query: 10 FVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDD 69
F++++ LT+ GL + DII ++QYI+ LR PQ+W+F+EL+D+ + FRF +++
Sbjct: 344 FIINVDLTEEGLLHVEDIILHMFQYIQKLRAEGPQEWVFQELKDLNAVAFRFKDKERPRG 403
Query: 70 YAAELAGNLLIYPAEHVIYGEYMYEVWDEEMIKHLLGFFMPENMRIDVVSKSFAKSQDFH 129
Y +++AG L YP E V+ EY+ E + ++I+ +L PEN+R+ +VSKSF D
Sbjct: 404 YTSKIAGILHYYPLEEVLTAEYLLEEFRPDLIEMVLDKLRPENVRVAIVSKSFEGKTD-R 462
Query: 130 YEPWFGSRYTEEDISPSLMELWRNPPEIDVSLQLPSQNEFIPTDFSIRANDISNDLVTVT 189
E W+G++Y +E I +++ W+N +++ +LP++NEFIPT+F I + +
Sbjct: 463 TEEWYGTQYKQEAIPDEVIKKWQN-ADLNGKFKLPTKNEFIPTNFEI----LPLEKEATP 517
Query: 190 SPTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELNE 249
P I D + + W+K D+ F LP+AN F Y + + + L++ LLKD LNE
Sbjct: 518 YPALIKDTAMSKLWFKQDDKFFLPKANLNFEFFSPFAYVDPLHSNMAYLYLELLKDSLNE 577
Query: 250 IIYQASVAKLETSVSIFSDKLELKVYGFNDKLPVLLSKILAIAKSFLPSDDRFKVIKEDV 309
Y A +A L + + L V G+NDK P+LL KI+ +F + RF++IKE
Sbjct: 578 YAYAAELAGLSYDLQNTIYGMYLSVKGYNDKQPILLKKIIEKMATFEIDEKRFEIIKEAY 637
Query: 310 VRTLKNTNM-KPLSHSSYLRLQVLCQSFYDVDEKLSILHGLSLADLMAFIPELRSQLYIE 368
+R+L N +P H+ Y ++ + + DE L ++L L AFIP+L S+L+IE
Sbjct: 638 MRSLNNFRAEQPHQHAMYYLRLLMTEVAWTKDELKEALDDVTLPRLKAFIPQLLSRLHIE 697
Query: 369 GLCHGNLSQEEAIHISNIFKSIFSVQPLPIEMRHQECVICLPSGANLVRNVSV------- 421
L HGN++++ A+ I + + + H LPS R V +
Sbjct: 698 ALLHGNITKQAALGIMQMVEDTL--------IEHAHTKPLLPSQLVRYREVQLPDRGWFV 749
Query: 422 ---KNKCETNSVIELYFQIEQEKGMELTRLKALIDLFDEILEEPFFNQLRTKEQLGYVVE 478
+N+ NS IE+Y+Q + M+ T ++LF +I+ EP FN LRTKEQLGY+V
Sbjct: 750 YQQRNEVHNNSGIEIYYQTD----MQSTSENMFLELFAQIISEPAFNTLRTKEQLGYIVF 805
Query: 479 CSPRVTYRVFGFCFCIQSSKYNPIYLQERIDNFISXXXXXXXXXXXXSFENYRSGLMAKL 538
PR + G F IQS K P YL+ R++ F+ +F+ + L +
Sbjct: 806 SGPRRANGIQGLRFIIQSEK-PPHYLESRVEAFLITMEKSIEDMTEEAFQKHIQALAIRR 864
Query: 539 LEKDPSLTYESNRFWNQITDKRYMFDQSQKEAEDLKSIKKNDVISWYKTYLQQWSPKCRR 598
L+K L+ ES +++ +I ++Y FD+ E LK++ K D+I +YK L +P+ +
Sbjct: 865 LDKPKKLSAESAKYYGEIISQQYNFDRDNTEVAYLKTLTKEDIIKFYKEMLAVDAPRRHK 924
Query: 599 LAVRV-------------WGCNTNIKESEKHS-KSALVIKDLTAFK 630
++V V + C +I S+ + VI+++T FK
Sbjct: 925 VSVHVLAREMDSCPVVGEFPCQNDINLSQAPALPQPEVIQNMTEFK 970
>pdb|2G47|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-40)
pdb|2G47|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-40)
pdb|2G48|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
pdb|2G48|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
pdb|2G49|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Glucagon
pdb|2G49|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Glucagon
pdb|2G54|A Chain A, Crystal Structure Of Zn-Bound Human Insulin-Degrading
Enzyme In Complex With Insulin B Chain
pdb|2G54|B Chain B, Crystal Structure Of Zn-Bound Human Insulin-Degrading
Enzyme In Complex With Insulin B Chain
pdb|2G56|A Chain A, Crystal Structure Of Human Insulin-degrading Enzyme In
Complex With Insulin B Chain
pdb|2G56|B Chain B, Crystal Structure Of Human Insulin-degrading Enzyme In
Complex With Insulin B Chain
pdb|2JBU|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme
Complexed With Co-Purified Peptides.
pdb|2JBU|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme
Complexed With Co-Purified Peptides.
pdb|3E50|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Transforming Growth Factor-Alpha
pdb|3E50|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Transforming Growth Factor-Alpha
Length = 990
Score = 330 bits (846), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 206/646 (31%), Positives = 340/646 (52%), Gaps = 44/646 (6%)
Query: 10 FVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDD 69
F++++ LT+ GL + DII ++QYI+ LR PQ+W+F+E +D+ + FRF +++
Sbjct: 344 FIINVDLTEEGLLHVEDIILHMFQYIQKLRAEGPQEWVFQECKDLNAVAFRFKDKERPRG 403
Query: 70 YAAELAGNLLIYPAEHVIYGEYMYEVWDEEMIKHLLGFFMPENMRIDVVSKSFAKSQDFH 129
Y +++AG L YP E V+ EY+ E + ++I+ +L PEN+R+ +VSKSF D
Sbjct: 404 YTSKIAGILHYYPLEEVLTAEYLLEEFRPDLIEMVLDKLRPENVRVAIVSKSFEGKTD-R 462
Query: 130 YEPWFGSRYTEEDISPSLMELWRNPPEIDVSLQLPSQNEFIPTDFSIRANDISNDLVTVT 189
E W+G++Y +E I +++ W+N +++ +LP++NEFIPT+F I + +
Sbjct: 463 TEEWYGTQYKQEAIPDEVIKKWQN-ADLNGKFKLPTKNEFIPTNFEI----LPLEKEATP 517
Query: 190 SPTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELNE 249
P I D + + W+K D+ F LP+A F Y + +C + L++ LLKD LNE
Sbjct: 518 YPALIKDTAMSKLWFKQDDKFFLPKACLNFEFFSPFAYVDPLHCNMAYLYLELLKDSLNE 577
Query: 250 IIYQASVAKLETSVSIFSDKLELKVYGFNDKLPVLLSKILAIAKSFLPSDDRFKVIKEDV 309
Y A +A L + + L V G+NDK P+LL KI+ +F + RF++IKE
Sbjct: 578 YAYAAELAGLSYDLQNTIYGMYLSVKGYNDKQPILLKKIIEKMATFEIDEKRFEIIKEAY 637
Query: 310 VRTLKNTNM-KPLSHSSYLRLQVLCQSFYDVDEKLSILHGLSLADLMAFIPELRSQLYIE 368
+R+L N +P H+ Y ++ + + DE L ++L L AFIP+L S+L+IE
Sbjct: 638 MRSLNNFRAEQPHQHAMYYLRLLMTEVAWTKDELKEALDDVTLPRLKAFIPQLLSRLHIE 697
Query: 369 GLCHGNLSQEEAIHISNIFKSIFSVQPLPIEMRHQECVICLPSGANLVRNVSV------- 421
L HGN++++ A+ I + + + H LPS R V +
Sbjct: 698 ALLHGNITKQAALGIMQMVEDTL--------IEHAHTKPLLPSQLVRYREVQLPDRGWFV 749
Query: 422 ---KNKCETNSVIELYFQIEQEKGMELTRLKALIDLFDEILEEPFFNQLRTKEQLGYVVE 478
+N+ N IE+Y+Q + M+ T ++LF +I+ EP FN LRTKEQLGY+V
Sbjct: 750 YQQRNEVHNNCGIEIYYQTD----MQSTSENMFLELFCQIISEPCFNTLRTKEQLGYIVF 805
Query: 479 CSPRVTYRVFGFCFCIQSSKYNPIYLQERIDNFISXXXXXXXXXXXXSFENYRSGLMAKL 538
PR + G F IQS K P YL+ R++ F+ +F+ + L +
Sbjct: 806 SGPRRANGIQGLRFIIQSEK-PPHYLESRVEAFLITMEKSIEDMTEEAFQKHIQALAIRR 864
Query: 539 LEKDPSLTYESNRFWNQITDKRYMFDQSQKEAEDLKSIKKNDVISWYKTYLQQWSPKCRR 598
L+K L+ E ++W +I ++Y FD+ E LK++ K D+I +YK L +P+ +
Sbjct: 865 LDKPKKLSAECAKYWGEIISQQYNFDRDNTEVAYLKTLTKEDIIKFYKEMLAVDAPRRHK 924
Query: 599 LAVRV-------------WGCNTNIKESEKHS-KSALVIKDLTAFK 630
++V V + C +I S+ + VI+++T FK
Sbjct: 925 VSVHVLAREMDSCPVVGEFPCQNDINLSQAPALPQPEVIQNMTEFK 970
>pdb|2JG4|A Chain A, Substrate-Free Ide Structure In Its Closed Conformation
pdb|2JG4|B Chain B, Substrate-Free Ide Structure In Its Closed Conformation
Length = 990
Score = 328 bits (842), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 205/646 (31%), Positives = 340/646 (52%), Gaps = 44/646 (6%)
Query: 10 FVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDD 69
F++++ LT+ GL + DII ++QYI+ LR PQ+W+F+E +D+ + FRF +++
Sbjct: 344 FIINVDLTEEGLLHVEDIILHMFQYIQKLRAEGPQEWVFQECKDLNAVAFRFKDKERPRG 403
Query: 70 YAAELAGNLLIYPAEHVIYGEYMYEVWDEEMIKHLLGFFMPENMRIDVVSKSFAKSQDFH 129
Y +++AG L YP E V+ EY+ E + ++I+ +L PEN+R+ +VSKSF D
Sbjct: 404 YTSKIAGILHYYPLEEVLTAEYLLEEFRPDLIEMVLDKLRPENVRVAIVSKSFEGKTD-R 462
Query: 130 YEPWFGSRYTEEDISPSLMELWRNPPEIDVSLQLPSQNEFIPTDFSIRANDISNDLVTVT 189
E W+G++Y +E I +++ W+N +++ +LP++NEFIPT+F I + +
Sbjct: 463 TEEWYGTQYKQEAIPDEVIKKWQN-ADLNGKFKLPTKNEFIPTNFEI----LPLEKEATP 517
Query: 190 SPTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELNE 249
P I D + + W+K D+ F LP+A F Y + +C + L++ LLKD LNE
Sbjct: 518 YPALIKDTAMSKLWFKQDDKFFLPKACLNFEFFSPFAYVDPLHCNMAYLYLELLKDSLNE 577
Query: 250 IIYQASVAKLETSVSIFSDKLELKVYGFNDKLPVLLSKILAIAKSFLPSDDRFKVIKEDV 309
Y A +A L + + L V G+NDK P+LL KI+ +F + RF++IKE
Sbjct: 578 YAYAAELAGLSYDLQNTIYGMYLSVKGYNDKQPILLKKIIEKMATFEIDEKRFEIIKEAY 637
Query: 310 VRTLKNTNM-KPLSHSSYLRLQVLCQSFYDVDEKLSILHGLSLADLMAFIPELRSQLYIE 368
+R+L N +P H+ Y ++ + + DE L ++L L AFIP+L S+L+IE
Sbjct: 638 MRSLNNFRAEQPHQHAMYYLRLLMTEVAWTKDELKEALDDVTLPRLKAFIPQLLSRLHIE 697
Query: 369 GLCHGNLSQEEAIHISNIFKSIFSVQPLPIEMRHQECVICLPSGANLVRNVSV------- 421
L HGN++++ A+ I + + + H LPS R V +
Sbjct: 698 ALLHGNITKQAALGIMQMVEDTL--------IEHAHTKPLLPSQLVRYREVQLPDRGWFV 749
Query: 422 ---KNKCETNSVIELYFQIEQEKGMELTRLKALIDLFDEILEEPFFNQLRTKEQLGYVVE 478
+N+ N IE+Y+Q + M+ T ++LF +I+ EP FN LRTKEQLG++V
Sbjct: 750 YQQRNEVHNNCGIEIYYQTD----MQSTSENMFLELFCQIISEPCFNTLRTKEQLGFIVF 805
Query: 479 CSPRVTYRVFGFCFCIQSSKYNPIYLQERIDNFISXXXXXXXXXXXXSFENYRSGLMAKL 538
PR + G F IQS K P YL+ R++ F+ +F+ + L +
Sbjct: 806 SGPRRANGIQGLRFIIQSEK-PPHYLESRVEAFLITMEKSIEDMTEEAFQKHIQALAIRR 864
Query: 539 LEKDPSLTYESNRFWNQITDKRYMFDQSQKEAEDLKSIKKNDVISWYKTYLQQWSPKCRR 598
L+K L+ E ++W +I ++Y FD+ E LK++ K D+I +YK L +P+ +
Sbjct: 865 LDKPKKLSAECAKYWGEIISQQYNFDRDNTEVAYLKTLTKEDIIKFYKEMLAVDAPRRHK 924
Query: 599 LAVRV-------------WGCNTNIKESEKHS-KSALVIKDLTAFK 630
++V V + C +I S+ + VI+++T FK
Sbjct: 925 VSVHVLAREMDSCPVVGEFPCQNDINLSQAPALPQPEVIQNMTEFK 970
>pdb|3P7L|A Chain A, Rat Insulin Degrading Enzyme (Insulysin)
Length = 978
Score = 326 bits (836), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 197/605 (32%), Positives = 323/605 (53%), Gaps = 30/605 (4%)
Query: 10 FVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDD 69
F++++ LT+ GL + DII ++QYI+ LR PQ+W+F+E +D+ + FRF +++
Sbjct: 332 FIINVDLTEEGLLHVEDIILHMFQYIQKLRAEGPQEWVFQECKDLNAVAFRFKDKERPRG 391
Query: 70 YAAELAGNLLIYPAEHVIYGEYMYEVWDEEMIKHLLGFFMPENMRIDVVSKSFAKSQDFH 129
Y +++AG L YP V+ EY+ E + ++I +L PEN+R+ +VSKSF D
Sbjct: 392 YTSKIAGKLHYYPLNGVLTAEYLLEEFRPDLIDMVLDKLRPENVRVAIVSKSFEGKTD-R 450
Query: 130 YEPWFGSRYTEEDISPSLMELWRNPPEIDVSLQLPSQNEFIPTDFSIRANDISNDLVTVT 189
E W+G++Y +E I +++ W+N +++ +LP++NEFIPT+F I A + D
Sbjct: 451 TEQWYGTQYKQEAIPEDVIQKWQN-ADLNGKFKLPTKNEFIPTNFEILA--LEKD--ATP 505
Query: 190 SPTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELNE 249
P I D + + W+K D+ F LP+A F Y + +C + L++ LLKD LNE
Sbjct: 506 YPALIKDTAMSKLWFKQDDKFFLPKACLNFEFFSPFAYVDPLHCNMAYLYLELLKDSLNE 565
Query: 250 IIYQASVAKLETSVSIFSDKLELKVYGFNDKLPVLLSKILAIAKSFLPSDDRFKVIKEDV 309
Y A +A L + + L V G+NDK P+LL KI +F RF++IKE
Sbjct: 566 YAYAAELAGLSYDLQNTIYGMYLSVKGYNDKQPILLKKITEKMATFEIDKKRFEIIKEAY 625
Query: 310 VRTLKNTNM-KPLSHSSYLRLQVLCQSFYDVDEKLSILHGLSLADLMAFIPELRSQLYIE 368
+R+L N +P H+ Y ++ + + DE L ++L L AFIP+L S+L+IE
Sbjct: 626 MRSLNNFRAEQPHQHAMYYLRLLMTEVAWTKDELKEALDDVTLPRLKAFIPQLLSRLHIE 685
Query: 369 GLCHGNLSQEEAIHISNIFKSIFSVQPLPIEMRHQECVICLPSGANLVRNVSV------- 421
L HGN++++ A+ + + + + H LPS R V +
Sbjct: 686 ALLHGNITKQAALGVMQMVEDTL--------IEHAHTKPLLPSQLVRYREVQLPDRGWFV 737
Query: 422 ---KNKCETNSVIELYFQIEQEKGMELTRLKALIDLFDEILEEPFFNQLRTKEQLGYVVE 478
+N+ N IE+Y+Q + M+ T ++LF +I+ EP FN LRTKEQLGY+V
Sbjct: 738 YQRRNEVHNNCGIEIYYQTD----MQSTSENMFLELFCQIISEPCFNTLRTKEQLGYIVF 793
Query: 479 CSPRVTYRVFGFCFCIQSSKYNPIYLQERIDNFISXXXXXXXXXXXXSFENYRSGLMAKL 538
PR + G F IQS K P YL+ R++ F+ +F+ + L +
Sbjct: 794 SGPRRANGIQGLRFIIQSEK-PPHYLESRVEAFLITMEKAIEDMTEEAFQKHIQALAIRR 852
Query: 539 LEKDPSLTYESNRFWNQITDKRYMFDQSQKEAEDLKSIKKNDVISWYKTYLQQWSPKCRR 598
L+K L+ E ++W +I ++Y +D+ E LK++ K+D+I +YK L +P+ +
Sbjct: 853 LDKPKKLSAECAKYWGEIISQQYNYDRDNIEVAYLKTLSKDDIIKFYKEMLAVDAPRRHK 912
Query: 599 LAVRV 603
++V V
Sbjct: 913 VSVHV 917
>pdb|3TUV|A Chain A, Crystal Structure Of Insulysin With Bound Atp
Length = 1019
Score = 326 bits (835), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 197/605 (32%), Positives = 323/605 (53%), Gaps = 30/605 (4%)
Query: 10 FVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDD 69
F++++ LT+ GL + DII ++QYI+ LR PQ+W+F+E +D+ + FRF +++
Sbjct: 373 FIINVDLTEEGLLHVEDIILHMFQYIQKLRAEGPQEWVFQECKDLNAVAFRFKDKERPRG 432
Query: 70 YAAELAGNLLIYPAEHVIYGEYMYEVWDEEMIKHLLGFFMPENMRIDVVSKSFAKSQDFH 129
Y +++AG L YP V+ EY+ E + ++I +L PEN+R+ +VSKSF D
Sbjct: 433 YTSKIAGKLHYYPLNGVLTAEYLLEEFRPDLIDMVLDKLRPENVRVAIVSKSFEGKTD-R 491
Query: 130 YEPWFGSRYTEEDISPSLMELWRNPPEIDVSLQLPSQNEFIPTDFSIRANDISNDLVTVT 189
E W+G++Y +E I +++ W+N +++ +LP++NEFIPT+F I A + D
Sbjct: 492 TEQWYGTQYKQEAIPEDVIQKWQN-ADLNGKFKLPTKNEFIPTNFEILA--LEKD--ATP 546
Query: 190 SPTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELNE 249
P I D + + W+K D+ F LP+A F Y + +C + L++ LLKD LNE
Sbjct: 547 YPALIKDTAMSKLWFKQDDKFFLPKACLNFEFFSPFAYVDPLHCNMAYLYLELLKDSLNE 606
Query: 250 IIYQASVAKLETSVSIFSDKLELKVYGFNDKLPVLLSKILAIAKSFLPSDDRFKVIKEDV 309
Y A +A L + + L V G+NDK P+LL KI +F RF++IKE
Sbjct: 607 YAYAAELAGLSYDLQNTIYGMYLSVKGYNDKQPILLKKITEKMATFEIDKKRFEIIKEAY 666
Query: 310 VRTLKNTNM-KPLSHSSYLRLQVLCQSFYDVDEKLSILHGLSLADLMAFIPELRSQLYIE 368
+R+L N +P H+ Y ++ + + DE L ++L L AFIP+L S+L+IE
Sbjct: 667 MRSLNNFRAEQPHQHAMYYLRLLMTEVAWTKDELKEALDDVTLPRLKAFIPQLLSRLHIE 726
Query: 369 GLCHGNLSQEEAIHISNIFKSIFSVQPLPIEMRHQECVICLPSGANLVRNVSV------- 421
L HGN++++ A+ + + + + H LPS R V +
Sbjct: 727 ALLHGNITKQAALGVMQMVEDTL--------IEHAHTKPLLPSQLVRYREVQLPDRGWFV 778
Query: 422 ---KNKCETNSVIELYFQIEQEKGMELTRLKALIDLFDEILEEPFFNQLRTKEQLGYVVE 478
+N+ N IE+Y+Q + M+ T ++LF +I+ EP FN LRTKEQLGY+V
Sbjct: 779 YQRRNEVHNNCGIEIYYQTD----MQSTSENMFLELFCQIISEPCFNTLRTKEQLGYIVF 834
Query: 479 CSPRVTYRVFGFCFCIQSSKYNPIYLQERIDNFISXXXXXXXXXXXXSFENYRSGLMAKL 538
PR + G F IQS K P YL+ R++ F+ +F+ + L +
Sbjct: 835 SGPRRANGIQGLRFIIQSEK-PPHYLESRVEAFLITMEKAIEDMTEEAFQKHIQALAIRR 893
Query: 539 LEKDPSLTYESNRFWNQITDKRYMFDQSQKEAEDLKSIKKNDVISWYKTYLQQWSPKCRR 598
L+K L+ E ++W +I ++Y +D+ E LK++ K+D+I +YK L +P+ +
Sbjct: 894 LDKPKKLSAECAKYWGEIISQQYNYDRDNIEVAYLKTLSKDDIIKFYKEMLAVDAPRRHK 953
Query: 599 LAVRV 603
++V V
Sbjct: 954 VSVHV 958
>pdb|3P7O|A Chain A, Rat Insulin Degrading Enzyme (Insulysin) E111f Mutant With
Two Bound Peptides
Length = 1019
Score = 325 bits (834), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 197/605 (32%), Positives = 323/605 (53%), Gaps = 30/605 (4%)
Query: 10 FVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDD 69
F++++ LT+ GL + DII ++QYI+ LR PQ+W+F+E +D+ + FRF +++
Sbjct: 373 FIINVDLTEEGLLHVEDIILHMFQYIQKLRAEGPQEWVFQECKDLNAVAFRFKDKERPRG 432
Query: 70 YAAELAGNLLIYPAEHVIYGEYMYEVWDEEMIKHLLGFFMPENMRIDVVSKSFAKSQDFH 129
Y +++AG L YP V+ EY+ E + ++I +L PEN+R+ +VSKSF D
Sbjct: 433 YTSKIAGKLHYYPLNGVLTAEYLLEEFRPDLIDMVLDKLRPENVRVAIVSKSFEGKTD-R 491
Query: 130 YEPWFGSRYTEEDISPSLMELWRNPPEIDVSLQLPSQNEFIPTDFSIRANDISNDLVTVT 189
E W+G++Y +E I +++ W+N +++ +LP++NEFIPT+F I A + D
Sbjct: 492 TEQWYGTQYKQEAIPEDVIQKWQN-ADLNGKFKLPTKNEFIPTNFEILA--LEKD--ATP 546
Query: 190 SPTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELNE 249
P I D + + W+K D+ F LP+A F Y + +C + L++ LLKD LNE
Sbjct: 547 YPALIKDTAMSKLWFKQDDKFFLPKACLNFEFFSPFAYVDPLHCNMAYLYLELLKDSLNE 606
Query: 250 IIYQASVAKLETSVSIFSDKLELKVYGFNDKLPVLLSKILAIAKSFLPSDDRFKVIKEDV 309
Y A +A L + + L V G+NDK P+LL KI +F RF++IKE
Sbjct: 607 YAYAAELAGLSYDLQNTIYGMYLSVKGYNDKQPILLKKITEKMATFEIDKKRFEIIKEAY 666
Query: 310 VRTLKNTNM-KPLSHSSYLRLQVLCQSFYDVDEKLSILHGLSLADLMAFIPELRSQLYIE 368
+R+L N +P H+ Y ++ + + DE L ++L L AFIP+L S+L+IE
Sbjct: 667 MRSLNNFRAEQPHQHAMYYLRLLMTEVAWTKDELKEALDDVTLPRLKAFIPQLLSRLHIE 726
Query: 369 GLCHGNLSQEEAIHISNIFKSIFSVQPLPIEMRHQECVICLPSGANLVRNVSV------- 421
L HGN++++ A+ + + + + H LPS R V +
Sbjct: 727 ALLHGNITKQAALGVMQMVEDTL--------IEHAHTKPLLPSQLVRYREVQLPDRGWFV 778
Query: 422 ---KNKCETNSVIELYFQIEQEKGMELTRLKALIDLFDEILEEPFFNQLRTKEQLGYVVE 478
+N+ N IE+Y+Q + M+ T ++LF +I+ EP FN LRTKEQLGY+V
Sbjct: 779 YQRRNEVHNNCGIEIYYQTD----MQSTSENMFLELFCQIISEPCFNTLRTKEQLGYIVF 834
Query: 479 CSPRVTYRVFGFCFCIQSSKYNPIYLQERIDNFISXXXXXXXXXXXXSFENYRSGLMAKL 538
PR + G F IQS K P YL+ R++ F+ +F+ + L +
Sbjct: 835 SGPRRANGIQGLRFIIQSEK-PPHYLESRVEAFLITMEKAIEDMTEEAFQKHIQALAIRR 893
Query: 539 LEKDPSLTYESNRFWNQITDKRYMFDQSQKEAEDLKSIKKNDVISWYKTYLQQWSPKCRR 598
L+K L+ E ++W +I ++Y +D+ E LK++ K+D+I +YK L +P+ +
Sbjct: 894 LDKPKKLSAECAKYWGEIISQQYNYDRDNIEVAYLKTLSKDDIIKFYKEMLAVDAPRRHK 953
Query: 599 LAVRV 603
++V V
Sbjct: 954 VSVHV 958
>pdb|1Q2L|A Chain A, Crystal Structure Of Pitrilysin
Length = 939
Score = 152 bits (385), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 128/562 (22%), Positives = 241/562 (42%), Gaps = 21/562 (3%)
Query: 9 IFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQD 68
+ +S LTD GL ++ ++ Y+ LLR+ K F EL ++ +++FR+
Sbjct: 327 VLAISASLTDKGLANRDQVVAAIFSYLNLLREKGIDKQYFDELANVLDIDFRYPSITRDM 386
Query: 69 DYAAELAGNLLIYPAEHVIYGEYMYEVWDEEMIKHLLGFFMPENMRIDVVSKSFAKSQDF 128
DY LA ++ P EH + + + +D + +K L P+N RI +S ++
Sbjct: 387 DYVEWLADTMIRVPVEHTLDAVNIADRYDAKAVKERLAMMTPQNARIWYISPKEPHNKTA 446
Query: 129 HYEPWFGSRYTEEDISPSLMELWRNPPEIDVSLQLPSQNEFIPTDFSIRANDISNDLVTV 188
++ + Y + IS W+ D++L LP N +IP DFS+ ++ D
Sbjct: 447 YF---VDAPYQVDKISAQTFADWQK-KAADIALSLPELNPYIPDDFSLIKSEKKYD---- 498
Query: 189 TSPTCIIDEPLIRFWYKLDNTFKL-PRANTYFRINLKGGYDNVKNCILTELFIHLLKDEL 247
P I+DE +R Y F P+A+ + D+ +N ++ L +L L
Sbjct: 499 -HPELIVDESNLRVVYAPSRYFASEPKADVSLILRNPKAMDSARNQVMFALNDYLAGLAL 557
Query: 248 NEIIYQASVAKLETSVSIFSDKLELKVYGFNDKLPVLLSKILAIAKSFLPSDDRFKVIKE 307
+++ QASV + S + ++ L + G+ +LP L +L S+ ++D+ + K
Sbjct: 558 DQLSNQASVGGISFSTNA-NNGLMVNANGYTQRLPQLFQALLEGYFSYTATEDQLEQAKS 616
Query: 308 DVVRTLKNTNMKPLSHSSYLRLQVLCQ-SFYDVDEKLSILHGLSLADLMAFIPELRSQLY 366
+ + + + + Q+L Q ++ DE+ IL ++L +++A+ L+S
Sbjct: 617 WYNQMMDSAEKGKAFEQAIMPAQMLSQVPYFSRDERRKILPSITLKEVLAYRDALKSGAR 676
Query: 367 IEGLCHGNLSQEEAIHISNIFKSIFSVQPLPIEMRHQECVICLPSGANLVRNVSVKNKCE 426
E + GN+++ +A ++ + ++ C + + SV +
Sbjct: 677 PEFMVIGNMTEAQATTLARDVQK---------QLGADGSEWCRNKDVVVDKKQSVIFEKA 727
Query: 427 TNSVIELYFQIEQEKGMELTRLKALIDLFDEILEEPFFNQLRTKEQLGYVVECSPRVTYR 486
NS + G + A L +I++ F+NQLRT+EQLGY V P R
Sbjct: 728 GNSTDSALAAVFVPTGYDEYTSSAYSSLLGQIVQPWFYNQLRTEEQLGYAVFAFPMSVGR 787
Query: 487 VFGFCFCIQSSKYNPIYLQERIDNFISXXXXXXXXXXXXSFENYRSGLMAKLLEKDPSLT 546
+G F +QS+ P +L ER F F + ++ ++L+ +L
Sbjct: 788 QWGMGFLLQSNDKQPSFLWERYKAFFPTAEAKLRAMKPDEFAQIQQAVITQMLQAPQTLG 847
Query: 547 YESNRFWNQITDKRYMFDQSQK 568
E+++ FD K
Sbjct: 848 EEASKLSKDFDRGNMRFDSRDK 869
>pdb|3B5K|A Chain A, Crystal Structure Of Murine Interleukin-5
pdb|3B5K|B Chain B, Crystal Structure Of Murine Interleukin-5
Length = 113
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 395 PLPIEMRHQECVICLPSGANLVRNVSVKNKC-----ETNSVIELYFQIEQEK-GMELTRL 448
P+P HQ C+ + G ++++N +V+ + S+I+ Y ++EK G E R
Sbjct: 32 PVPTHKNHQLCIGEIFQGLDILKNQTVRGGTVERLFQNLSLIKKYIDRQKEKCGEERRRT 91
Query: 449 KALIDLFDEIL 459
+ +D E L
Sbjct: 92 RQFLDYLQEFL 102
>pdb|1NKV|A Chain A, X-Ray Structure Of Yjhp From E.Coli Northeast Structural
Genomics Research Consortium (Nesg) Target Er13
pdb|1NKV|B Chain B, X-Ray Structure Of Yjhp From E.Coli Northeast Structural
Genomics Research Consortium (Nesg) Target Er13
pdb|1NKV|C Chain C, X-Ray Structure Of Yjhp From E.Coli Northeast Structural
Genomics Research Consortium (Nesg) Target Er13
Length = 256
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 14/78 (17%)
Query: 16 LTDSGLEKIFDIIGFVYQYIKLLRQVS-----PQKWIFKELQDIGNMEFRFAEEQPQDDY 70
LT GL FD +G+ L Q KW+ R+ E P DD+
Sbjct: 165 LTLPGLVGAFDDLGYDVVEXVLADQEGWDRYEAAKWLTXR---------RWLEANPDDDF 215
Query: 71 AAELAGNLLIYPAEHVIY 88
AAE+ L I P +V Y
Sbjct: 216 AAEVRAELNIAPKRYVTY 233
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,242,694
Number of Sequences: 62578
Number of extensions: 761442
Number of successful extensions: 1803
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1709
Number of HSP's gapped (non-prelim): 17
length of query: 640
length of database: 14,973,337
effective HSP length: 105
effective length of query: 535
effective length of database: 8,402,647
effective search space: 4495416145
effective search space used: 4495416145
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)