Query 006560
Match_columns 640
No_of_seqs 191 out of 1873
Neff 9.8
Searched_HMMs 46136
Date Thu Mar 28 11:11:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006560.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006560hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0959 N-arginine dibasic con 100.0 2.5E-82 5.5E-87 685.9 57.5 626 3-640 328-966 (974)
2 COG1025 Ptr Secreted/periplasm 100.0 6.7E-78 1.4E-82 639.0 60.5 607 4-632 324-932 (937)
3 PRK15101 protease3; Provisiona 100.0 2.2E-73 4.8E-78 663.7 70.7 607 5-634 346-955 (961)
4 COG0612 PqqL Predicted Zn-depe 100.0 2E-31 4.4E-36 283.9 32.9 407 191-610 17-434 (438)
5 TIGR02110 PQQ_syn_pqqF coenzym 99.9 1.7E-23 3.6E-28 227.1 30.0 327 194-534 3-346 (696)
6 PRK15101 protease3; Provisiona 99.9 4.1E-23 8.8E-28 241.7 31.9 403 189-607 42-462 (961)
7 KOG0960 Mitochondrial processi 99.9 3.4E-21 7.3E-26 185.1 28.2 403 192-612 35-454 (467)
8 KOG2067 Mitochondrial processi 99.9 1.8E-19 3.8E-24 173.6 25.3 398 192-613 26-450 (472)
9 PTZ00432 falcilysin; Provision 99.8 8.7E-18 1.9E-22 194.7 32.6 406 193-607 94-575 (1119)
10 PF05193 Peptidase_M16_C: Pept 99.7 2.1E-16 4.5E-21 147.7 18.9 180 348-534 1-184 (184)
11 PTZ00432 falcilysin; Provision 99.7 9.9E-15 2.1E-19 169.5 36.1 570 3-612 439-1108(1119)
12 COG1026 Predicted Zn-dependent 99.4 1.3E-10 2.7E-15 126.9 28.2 381 198-607 29-459 (978)
13 COG1026 Predicted Zn-dependent 99.4 5.8E-10 1.3E-14 121.8 30.7 545 12-591 340-945 (978)
14 TIGR02110 PQQ_syn_pqqF coenzym 99.3 1.8E-09 3.9E-14 118.3 31.1 225 239-512 469-695 (696)
15 KOG2019 Metalloendoprotease HM 99.3 7.5E-08 1.6E-12 100.1 37.1 551 21-609 385-987 (998)
16 COG1025 Ptr Secreted/periplasm 99.2 2.6E-08 5.6E-13 108.8 32.6 388 191-592 24-431 (937)
17 KOG2583 Ubiquinol cytochrome c 99.2 1.6E-07 3.5E-12 92.1 31.9 373 196-610 28-423 (429)
18 KOG2019 Metalloendoprotease HM 99.1 3.9E-08 8.5E-13 102.1 25.8 391 193-609 56-498 (998)
19 KOG0959 N-arginine dibasic con 99.0 4.3E-07 9.4E-12 101.2 32.0 390 191-592 28-436 (974)
20 PF00675 Peptidase_M16: Insuli 98.8 1.9E-08 4.1E-13 90.2 8.0 133 201-335 1-138 (149)
21 KOG0961 Predicted Zn2+-depende 98.6 3.7E-05 7.9E-10 80.5 26.5 308 269-591 100-445 (1022)
22 KOG0961 Predicted Zn2+-depende 98.5 1.3E-05 2.8E-10 83.8 19.5 330 270-613 636-992 (1022)
23 COG0612 PqqL Predicted Zn-depe 98.0 0.00046 1E-08 73.8 20.0 306 22-376 108-432 (438)
24 KOG2067 Mitochondrial processi 97.3 0.022 4.7E-07 56.8 17.3 308 25-377 118-446 (472)
25 KOG0960 Mitochondrial processi 96.0 0.18 3.8E-06 50.6 13.5 173 199-376 258-450 (467)
26 PF05193 Peptidase_M16_C: Pept 95.8 0.24 5.3E-06 45.2 13.6 42 268-309 140-184 (184)
27 PF08367 M16C_assoc: Peptidase 92.0 0.43 9.2E-06 46.6 6.9 123 189-315 68-208 (248)
28 PF00675 Peptidase_M16: Insuli 75.8 47 0.001 29.0 11.3 40 520-559 98-137 (149)
29 PF09851 SHOCT: Short C-termin 60.8 15 0.00032 22.6 3.2 16 520-535 15-30 (31)
30 COG1761 RPB11 DNA-directed RNA 40.2 1.1E+02 0.0024 24.8 6.0 64 463-529 32-96 (99)
31 PF05120 GvpG: Gas vesicle pro 30.2 1.6E+02 0.0034 22.8 5.2 40 499-540 28-67 (79)
32 PHA03081 putative metalloprote 29.9 7.2E+02 0.016 26.6 11.7 184 194-395 2-193 (595)
33 PF01729 QRPTase_C: Quinolinat 28.5 64 0.0014 29.2 3.4 40 346-385 106-146 (169)
34 cd08805 Death_ank1 Death domai 25.7 3.3E+02 0.0072 21.4 7.8 55 521-585 26-83 (84)
35 PF09568 RE_MjaI: MjaI restric 24.3 1.8E+02 0.0038 26.2 5.2 41 541-591 45-85 (170)
36 PRK11512 DNA-binding transcrip 20.6 2.7E+02 0.0059 24.1 5.9 45 11-55 95-139 (144)
37 PRK08385 nicotinate-nucleotide 20.3 2.1E+02 0.0045 28.3 5.4 40 346-385 208-250 (278)
38 PF08671 SinI: Anti-repressor 20.3 89 0.0019 19.1 1.8 18 570-587 10-28 (30)
No 1
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-82 Score=685.85 Aligned_cols=626 Identities=39% Similarity=0.655 Sum_probs=576.2
Q ss_pred CCCcceEEEEEEEcchhhhhcHHHHHHHHHHHHHHHHhCCCchHHHHHHHHhhhcccccCCCCChHHHHHHHHHhCCCCC
Q 006560 3 RSSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLLIYP 82 (640)
Q Consensus 3 ~~~~~~~f~i~i~Lt~~G~~~~~~ii~~~~~~i~~l~~~~~~~~~~~e~~~~~~~~f~~~~~~~~~~~~~~la~~l~~~~ 82 (640)
-+++|+.|.|++.||+.|++|+++|+..+|+||++++..|+.+|+|+|.+.+.+..|+|+++.+|++++..+|.+|+.||
T Consensus 328 ~as~~~~f~v~idLtd~G~e~~~~ii~~~f~yi~~l~~~~~~~~i~~E~~~~~~~~Frf~~k~~p~~~~~~~~~nlq~~P 407 (974)
T KOG0959|consen 328 FASGYSFFNVSIDLTDEGLEHVDEIIGLVFNYIKLLQSAGPEKWIFKELQLISEVKFRFQDKEPPMEYASEIASNLQYYP 407 (974)
T ss_pred cccccceEEEEEEeccccchhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhhhhheeecccCCcHHHHHHHHhhcccCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeeccccCccCCHHHHHHHHhccCcCceEEEEEeCCCCCCCcCcccccccccceeecCChHHHHHhcCCCCCCCCCC
Q 006560 83 AEHVIYGEYMYEVWDEEMIKHLLGFFMPENMRIDVVSKSFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNPPEIDVSLQ 162 (640)
Q Consensus 83 ~~~vl~~~~~~~~~d~~~i~~~l~~l~p~n~~i~~~~~~~~~~~~~~~~~~~~~~Y~~~~i~~~~~~~~~~~~~~~~~~~ 162 (640)
+++||.|.+++.+||++.|+.+++.|+|.|+++++.+..+.+ +++..|+|||+.|.++++|+++++.|.+ +..++.+.
T Consensus 408 ~~~il~~~~ll~~~~p~~i~~~~~~L~p~n~~v~~~s~~~~~-~~d~~E~~ygt~y~~e~i~~~~~~~~~~-~~~~~~l~ 485 (974)
T KOG0959|consen 408 VEDVLTGSYLLTEFDPDLIQEVLSSLVPSNMRVILVSRSFEG-KTDKAEPWYGTAYKVEDIPAEIIKEWEN-SHLNPELH 485 (974)
T ss_pred hHHhhcchhhhhhcChHHHHHHHHhcCcccceeeeeeecccc-ccccccceeccccccccCCHHHHHHhhc-cCcccccc
Confidence 999999999999999999999999999999999999988833 4788999999999999999999999976 56788999
Q ss_pred CCCCCCccCCCccccccccCCCCCCCCCCeEeecCCceEEEeeccCcccCcceEEEEEEecCCCCCCHHHHHHHHHHHHH
Q 006560 163 LPSQNEFIPTDFSIRANDISNDLVTVTSPTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHL 242 (640)
Q Consensus 163 lP~~N~~ip~~~~l~~~~~~~~~~~~~~P~~~~~~~g~~v~~~~d~~f~~P~~~i~~~~~~~~~~~~~~~~~~~~l~~~~ 242 (640)
||.+|.|||++|++...+. .....|.++.+++..++||++|+.|+.||+.+.+.|.+|....++.+.+++.++..+
T Consensus 486 lP~~nefI~t~f~~~~~~~----~~~~~P~Li~~~~~~~lw~k~dd~f~~Pka~~~~~~~~p~~~~~~~~~~l~~l~~~~ 561 (974)
T KOG0959|consen 486 LPTPNEFIPTDFSILPAPI----PKLEYPVLISDTPFSELWYKQDDKFNVPKAYTKFDFICPGATQSPLNSVLSTLYVRL 561 (974)
T ss_pred CCCCCcccccccccccccC----ccccCCeeeecCCcceeEEecccccccchhheeeeecCcccccCHHHHHHHHHHHHH
Confidence 9999999999999887652 345679999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhcccccccEEEEEEecceeEEEEeecCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhccc-cCcc
Q 006560 243 LKDELNEIIYQASVAKLETSVSIFSDKLELKVYGFNDKLPVLLSKILAIAKSFLPSDDRFKVIKEDVVRTLKNTN-MKPL 321 (640)
Q Consensus 243 l~~~l~~~~~~a~~ag~~~~~~~~~~g~~i~~~g~s~~l~~~l~~~~~~l~~~~~~~~~f~~~k~~~~~~l~~~~-~~p~ 321 (640)
+.+.+.+..|.|..||++++++.+..|+.+++.||+++++.+++.+++.|.++.++++.|+.+|+.+.++++|.. .+|+
T Consensus 562 l~d~l~E~~Y~A~~aGl~~~~~~s~~G~~~~v~Gfnekl~~ll~~~~~~~~~f~~~~~rf~iike~~~~~~~n~~~~~p~ 641 (974)
T KOG0959|consen 562 LKDQLNEYLYPALLAGLTYSLSSSSKGVELRVSGFNEKLPLLLEKVVQMMANFELDEDRFEIIKELLKRELRNHAFDNPY 641 (974)
T ss_pred HHHHHhHHHHHHHhccceEEeeecCCceEEEEeccCcccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhhhhccHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999966 5899
Q ss_pred chHHHHHHHhccCCCCCHHHHHhhhccCCHHHHHHHHHHHHhcceeEEEEeccCCHHHHHHHHHHHHhhcCCC-----CC
Q 006560 322 SHSSYLRLQVLCQSFYDVDEKLSILHGLSLADLMAFIPELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSVQ-----PL 396 (640)
Q Consensus 322 ~~a~~~~~~~l~~~~~~~~~~~~~l~~it~ed~~~~~~~~~~~~~~~~~v~Gni~~~~~~~l~~~~~~~l~~~-----~~ 396 (640)
.++.+.+.-++.+..|+..+.+++++.++++|+..|...++.+.+++++|+||++.++|.++++.+.+.++.. |+
T Consensus 642 ~~a~~~~~lll~~~~W~~~e~~~al~~~~le~~~~F~~~~~~~~~~e~~i~GN~te~~A~~l~~~v~d~l~~~~~~~~p~ 721 (974)
T KOG0959|consen 642 QLANDYLLLLLEESIWSKEELLEALDDVTLEDLESFISEFLQPFHLELLIHGNLTEKEALQLLKSVLDILKSAAPNSRPL 721 (974)
T ss_pred HHHHHHHHHHhhccccchHHHHHHhhcccHHHHHHHHHHHhhhhheEEEEecCcchHHHHHHHHHHHhhhhccCCCCccc
Confidence 9999999888889999999999999999999999999999999999999999999999999999888888321 22
Q ss_pred CccccccceEEEcCCCCeEEEEeecCCCCCCCeEEEEEEecccccCcchHHHHHHHHHHHHHhchhhHHHHHhhcccceE
Q 006560 397 PIEMRHQECVICLPSGANLVRNVSVKNKCETNSVIELYFQIEQEKGMELTRLKALIDLFDEILEEPFFNQLRTKEQLGYV 476 (640)
Q Consensus 397 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ll~~~l~s~lf~~LR~k~~LgY~ 476 (640)
........+...+|.|..+++... .++.+.|+++.+||| +|..+....+...|+.+++..++|+.||||+||||+
T Consensus 722 ~~~~~~~~~~~~lp~G~~~~~~~~-~n~~~~ns~i~~~~Q----~~~~~~~~~~~~~L~~~li~ep~Fd~LRTkeqLGYi 796 (974)
T KOG0959|consen 722 FRSEHLPRREIQLPNGDYYFYRHL-LNKTDDNSCIEVYYQ----IGVQDTRDNAVLGLLEQLIKEPAFDQLRTKEQLGYI 796 (974)
T ss_pred cccccCcccceeccCCceEEEEcc-cccCCCCceEEEEEE----cccchhHHHHHHHHHHHHhccchHHhhhhHHhhCeE
Confidence 222233445678899988764333 577889999999999 899999999999999999999999999999999999
Q ss_pred EEeeeeeeCceeeEEEEEEcCCCChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHH
Q 006560 477 VECSPRVTYRVFGFCFCIQSSKYNPIYLQERIDNFISGLDELLEGLDDESFENYRSGLMAKLLEKDPSLTYESNRFWNQI 556 (640)
Q Consensus 477 v~s~~~~~~~~~~~~~~vqs~~~~~~~~~~~i~~fl~~~~~~l~~~se~ef~~~k~~l~~~~~~~~~sl~~~~~~~w~~i 556 (640)
|++..+...|..++.+.|||. ++++.++.+|+.|++.+.+.+..|++++|+..+.++|....+++.++..++.++|.+|
T Consensus 797 v~~~~r~~~G~~~~~i~Vqs~-~~~~~le~rIe~fl~~~~~~i~~m~~e~Fe~~~~~lI~~~~ek~~~l~~e~~~~w~ei 875 (974)
T KOG0959|consen 797 VSTGVRLNYGTVGLQITVQSE-KSVDYLEERIESFLETFLEEIVEMSDEEFEKHKSGLIASKLEKPKNLSEESSRYWDEI 875 (974)
T ss_pred eeeeeeeecCcceeEEEEccC-CCchHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhcCcchhHHHHHHHHHH
Confidence 999999999999999999998 7999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccccchHhHHHHhcCCHHHHHHHHHHHcccCCCCcceEEEEEecCCCCcccccc---cC----CCceeecChHHH
Q 006560 557 TDKRYMFDQSQKEAEDLKSIKKNDVISWYKTYLQQWSPKCRRLAVRVWGCNTNIKESEK---HS----KSALVIKDLTAF 629 (640)
Q Consensus 557 ~~~~~~f~~~~~~~~~l~~vT~~dv~~~~~~~l~~~~~~~~~l~i~v~g~~~~~~~~~~---~~----~~~~~~~~~~~~ 629 (640)
..+.|.|++.++.+++++.||++|+..++..++...+.+++++++.+.|+....+.... .. .....|+|...|
T Consensus 876 ~~~~y~f~r~~~~v~~l~~i~k~~~i~~f~~~~~~~a~~~~~lsv~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~d~~~f 955 (974)
T KOG0959|consen 876 IIGQYNFDRDEKEVEALKKITKEDVINFFDEYIRKGAAKRKKLSVHVHGKQLDEEASSEKIKSQSENLLKIKEITDIVAF 955 (974)
T ss_pred HhhhhcchhhHHHHHHHHhhhHHHHHHHHHhhccccchhcceEEEEecCchhhhhhhcccchhhhhhcccccchHHHHHh
Confidence 99999999999999999999999999999999999889999999999999654321111 10 012348899999
Q ss_pred hccCcccccCC
Q 006560 630 KLSSEFYQSLC 640 (640)
Q Consensus 630 ~~~~~~~~~~~ 640 (640)
|.....||..|
T Consensus 956 k~~~~l~~~~~ 966 (974)
T KOG0959|consen 956 KRSLPLYPLVK 966 (974)
T ss_pred hcccccccccc
Confidence 99999999765
No 2
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.7e-78 Score=639.04 Aligned_cols=607 Identities=28% Similarity=0.463 Sum_probs=543.3
Q ss_pred CCcceEEEEEEEcchhhhhcHHHHHHHHHHHHHHHHhCCCchHHHHHHHHhhhcccccCCCCChHHHHHHHHHhCCCCCc
Q 006560 4 SSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLLIYPA 83 (640)
Q Consensus 4 ~~~~~~f~i~i~Lt~~G~~~~~~ii~~~~~~i~~l~~~~~~~~~~~e~~~~~~~~f~~~~~~~~~~~~~~la~~l~~~~~ 83 (640)
+++++.|.|+++||++|++|+++||.++|+|+++++++|+..+.|+|++++.+..|+|.+.+++++++..+|.+|..+|+
T Consensus 324 ~~n~~~f~is~~LT~~Gl~~~~~VI~~~F~yl~~l~~~~~~~~~f~Elq~v~~l~f~y~~~t~~~~~~~~l~~~m~~~p~ 403 (937)
T COG1025 324 SGNYGVFAISYELTDKGLAHYDRVIALTFQYLNLLREKGIPKYTFDELQNVLDLDFRYPSKTRPMDYVSWLADNMEREPV 403 (937)
T ss_pred cCCcceEEEEeehhhcchhhHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhcccccCChHHHHHHHHHhcccCCh
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeccccCccCCHHHHHHHHhccCcCceEEEEEeCCCCCCCcCcccccccccceeecCChHHHHHhcCCCCCCCCCCC
Q 006560 84 EHVIYGEYMYEVWDEEMIKHLLGFFMPENMRIDVVSKSFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNPPEIDVSLQL 163 (640)
Q Consensus 84 ~~vl~~~~~~~~~d~~~i~~~l~~l~p~n~~i~~~~~~~~~~~~~~~~~~~~~~Y~~~~i~~~~~~~~~~~~~~~~~~~l 163 (640)
++++.+..+++.||+++++..|..|+|+|++++++++.- ..++.+.|||++|.+.++..+.+..|.. .....++.|
T Consensus 404 ~~~~~~~~~~~~yd~~~~~~~l~~~~pen~R~~lis~~~---~~~~~a~~~~~py~v~~~~~~~~~~~~~-~~~~~~l~l 479 (937)
T COG1025 404 EHTLYASLVLPRYDPKAIQERLALMTPENARLWLISKLE---EHDKAAYFYGFPYQVDDYTAQPLDAWQQ-KADSIELSL 479 (937)
T ss_pred hhhhchhhcccccCHHHHHHHHHhhCccceEEEEecCCC---CccccceeecCcceecchhhhhhhhhhc-ccccccccC
Confidence 999999999999999999999999999999999999876 3467899999999999999999999987 455677889
Q ss_pred CCCCCccCCCccccccccCCCCCCCCCCeEeecCCceEEEeeccCcccC-cceEEEEEEecCCCCCCHHHHHHHHHHHHH
Q 006560 164 PSQNEFIPTDFSIRANDISNDLVTVTSPTCIIDEPLIRFWYKLDNTFKL-PRANTYFRINLKGGYDNVKNCILTELFIHL 242 (640)
Q Consensus 164 P~~N~~ip~~~~l~~~~~~~~~~~~~~P~~~~~~~g~~v~~~~d~~f~~-P~~~i~~~~~~~~~~~~~~~~~~~~l~~~~ 242 (640)
|.+|+|||++++++... ..-..|.++....|.++||++++.|.+ ||+.+.+.|++|....++++.++..|++.+
T Consensus 480 P~~N~fIp~~~~~~~~~-----~~~~~p~ll~~~~~~~~wy~~~d~F~~~PK~~v~~~irsp~~~~s~r~~Vl~~l~~~l 554 (937)
T COG1025 480 PEPNPFIPDDVSLIKSE-----KKFTFPQLLSEDPNLRLWYLKEDYFAVEPKASVSLAIRSPHASRSPRNQVLTELYAYL 554 (937)
T ss_pred CCCCCCCCccccccccc-----cCCCCchhhhcCCCceEEEecCCccccCCcceeEEEEeCcccccCHHHHHHHHHHHHH
Confidence 99999999999986543 234569999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHHhhhhhcccccccEEEEEEecceeEEEEeecCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcccc-Ccc
Q 006560 243 LKDELNEIIYQASVAKLETSVSIFSDKLELKVYGFNDKLPVLLSKILAIAKSFLPSDDRFKVIKEDVVRTLKNTNM-KPL 321 (640)
Q Consensus 243 l~~~l~~~~~~a~~ag~~~~~~~~~~g~~i~~~g~s~~l~~~l~~~~~~l~~~~~~~~~f~~~k~~~~~~l~~~~~-~p~ 321 (640)
+++.+.+..|+|..+|+++++.++.+|+.++++||+++++.+++.+++.+....++++.|+.+|+++.+++++... +|+
T Consensus 555 a~dal~~~~y~A~~aG~sfs~~~~~~Gl~ltisGft~~lp~L~~~~l~~l~~~~~~~~~f~~~K~~~~~~~~~a~~~~p~ 634 (937)
T COG1025 555 ANDALDKLSYQASLAGLSFSLAANSNGLDLTISGFTQRLPQLLRAFLDGLFSLPVDEDRFEQAKSQLSEELKNALTGKPY 634 (937)
T ss_pred HHHHHHhhhhHHHhcceEEEeecCCCceEEEeeccccchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhcCCH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999886 899
Q ss_pred chHHHHHHHhccCCCCCHHHHHhhhccCCHHHHHHHHHHHHhcceeEEEEeccCCHHHHHHHHHHHHhhcCCCCCCcccc
Q 006560 322 SHSSYLRLQVLCQSFYDVDEKLSILHGLSLADLMAFIPELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSVQPLPIEMR 401 (640)
Q Consensus 322 ~~a~~~~~~~l~~~~~~~~~~~~~l~~it~ed~~~~~~~~~~~~~~~~~v~Gni~~~~~~~l~~~~~~~l~~~~~~~~~~ 401 (640)
.++.+.+..++.++.|+..+++++++.++++++..|...++++.+++++|+||++.++|.++.+.+...++..+... .
T Consensus 635 ~~~~~~l~~l~~~~~~s~~e~~~~l~~v~~~e~~~f~~~l~~~~~lE~lv~Gn~~~~da~~l~~~~~~~l~~~~s~~--~ 712 (937)
T COG1025 635 RQALDGLTGLLQVPYWSREERRNALESVSVEEFAAFRDTLLNGVHLEMLVLGNLTEADATNLAETLQKKLPAIGSTW--Y 712 (937)
T ss_pred HHHHHHhhhhhCCCCcCHHHHHHHhhhccHHHHHHHHHHhhhccceeeeeeccchHHHHHHHHHHHHhhhcccCCcc--c
Confidence 99999999999999999999999999999999999999999999999999999999999999988777676543211 1
Q ss_pred ccceEEEcCCCCeEEEEeecCCCCCCCeEEEEEEecccccCcchHHHHHHHHHHHHHhchhhHHHHHhhcccceEEEeee
Q 006560 402 HQECVICLPSGANLVRNVSVKNKCETNSVIELYFQIEQEKGMELTRLKALIDLFDEILEEPFFNQLRTKEQLGYVVECSP 481 (640)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ll~~~l~s~lf~~LR~k~~LgY~v~s~~ 481 (640)
. .+...+++|+.........+++..|++++ +. .+..+.+..++..|++++++..+|++||||+||||.|++++
T Consensus 713 ~-~~~~~~~~~~~~~~e~~~~~~~~an~~i~--~~----~~~~~~~~~a~s~Ll~~l~~~~ff~~LRTkeQLGY~Vfs~~ 785 (937)
T COG1025 713 R-NPSVYLLKGGTRIFETVGGESDSANAAIL--YP----QQYDEIKSSALSSLLGQLIHPWFFDQLRTKEQLGYAVFSGP 785 (937)
T ss_pred C-CCceeccCCCeeEeeeccCCcccccceeE--ec----cccchHHHHHHHHHHHHHHhHHhHHHhhhhhhcceEEEecc
Confidence 1 22344555554443333444445555553 33 34457888999999999999999999999999999999999
Q ss_pred eeeCceeeEEEEEEcCCCChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcccc
Q 006560 482 RVTYRVFGFCFCIQSSKYNPIYLQERIDNFISGLDELLEGLDDESFENYRSGLMAKLLEKDPSLTYESNRFWNQITDKRY 561 (640)
Q Consensus 482 ~~~~~~~~~~~~vqs~~~~~~~~~~~i~~fl~~~~~~l~~~se~ef~~~k~~l~~~~~~~~~sl~~~~~~~w~~i~~~~~ 561 (640)
....++.|+.|+|||+.+.|+++.++|+.|++.+...+.+|++++|+..|+++++++.+++.|+..++.++|..+..|++
T Consensus 786 ~~v~~~~gi~f~vqS~~~~p~~L~~r~~~F~~~~~~~l~~ms~e~Fe~~k~alin~il~~~~nl~e~a~r~~~~~~~g~~ 865 (937)
T COG1025 786 REVGRTPGIGFLVQSNSKSPSYLLERINAFLETAEPELREMSEEDFEQIKKALINQILQPPQNLAEEASRLWKAFGRGNL 865 (937)
T ss_pred eeecCccceEEEEeCCCCChHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHhccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchHhHHHHhcCCHHHHHHHHHHHcccCCCCcceEEEEEecCCCCcccccccCCCceeecChHHHhcc
Q 006560 562 MFDQSQKEAEDLKSIKKNDVISWYKTYLQQWSPKCRRLAVRVWGCNTNIKESEKHSKSALVIKDLTAFKLS 632 (640)
Q Consensus 562 ~f~~~~~~~~~l~~vT~~dv~~~~~~~l~~~~~~~~~l~i~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (640)
+|++.++.++++++||++++.+|+...+... ++.++.++|.|+.... +.... .+.+.+++.-++|..
T Consensus 866 ~Fd~~ek~i~~vk~LT~~~l~~f~~~~l~~~--~g~~l~~~i~g~~~e~-~~~~~-~~~~~~~~~~~~~~~ 932 (937)
T COG1025 866 DFDHREKKIEAVKTLTKQKLLDFFENALSYE--QGSKLLSHIRGQNGEA-EYAHP-EGWTVLENVSALQQT 932 (937)
T ss_pred CcCcHHHHHHHHHhcCHHHHHHHHHHhhccc--ccceeeeeeecccccc-ccccC-Cceeeehhhhhhccc
Confidence 9999999999999999999999999999864 7789999999954322 22222 456666666555543
No 3
>PRK15101 protease3; Provisional
Probab=100.00 E-value=2.2e-73 Score=663.70 Aligned_cols=607 Identities=23% Similarity=0.372 Sum_probs=531.5
Q ss_pred CcceEEEEEEEcchhhhhcHHHHHHHHHHHHHHHHhCCCchHHHHHHHHhhhcccccCCCCChHHHHHHHHHhCCCCCcc
Q 006560 5 SIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLLIYPAE 84 (640)
Q Consensus 5 ~~~~~f~i~i~Lt~~G~~~~~~ii~~~~~~i~~l~~~~~~~~~~~e~~~~~~~~f~~~~~~~~~~~~~~la~~l~~~~~~ 84 (640)
.+++.|.|.+.+|++|.+++++|++.++++|+.+++.|++++++++++++...+|+|++...+.+++..++.+|+.++++
T Consensus 346 ~~~g~f~i~~~~~~~~~~~~~~v~~~i~~~i~~l~~~g~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (961)
T PRK15101 346 RNSGVFAISVSLTDKGLAQRDQVVAAIFSYLNLLREKGIDKSYFDELAHVLDLDFRYPSITRDMDYIEWLADTMLRVPVE 425 (961)
T ss_pred CCceEEEEEEEcChHHHHhHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhccccCCCCCChHHHHHHHHHHhhhCCHH
Confidence 45789999999999999999999999999999999999999999999999999999999989999999999999999999
Q ss_pred ceeeccccCccCCHHHHHHHHhccCcCceEEEEEeCCCCCCCcCcccccccccceeecCChHHHHHhcCCCCCCCCCCCC
Q 006560 85 HVIYGEYMYEVWDEEMIKHLLGFFMPENMRIDVVSKSFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNPPEIDVSLQLP 164 (640)
Q Consensus 85 ~vl~~~~~~~~~d~~~i~~~l~~l~p~n~~i~~~~~~~~~~~~~~~~~~~~~~Y~~~~i~~~~~~~~~~~~~~~~~~~lP 164 (640)
+++.+.++++.+|+++|++++++|+|+|+++++++|++ .+..+++||+++|++++|++++++.|.. ....+.++||
T Consensus 426 ~~l~~~~~~~~~~~~~i~~~~~~l~~~n~~i~~~~~~~---~~~~~~~~~~~~Y~~~~i~~~~~~~~~~-~~~~~~l~lP 501 (961)
T PRK15101 426 HTLDAPYIADRYDPKAIKARLAEMTPQNARIWYISPQE---PHNKTAYFVDAPYQVDKISEQTFADWQQ-KAQNIALSLP 501 (961)
T ss_pred HheeCchhhhcCCHHHHHHHHhhcCHhHEEEEEEeCCC---CCCccccccCCcceeecCCHHHHHHHhc-CCCCccCCCC
Confidence 99999999999999999999999999999999999987 4457899999999999999999999987 4667789999
Q ss_pred CCCCccCCCccccccccCCCCCCCCCCeEeecCCceEEEeeccCcc-cCcceEEEEEEecCCCCCCHHHHHHHHHHHHHH
Q 006560 165 SQNEFIPTDFSIRANDISNDLVTVTSPTCIIDEPLIRFWYKLDNTF-KLPRANTYFRINLKGGYDNVKNCILTELFIHLL 243 (640)
Q Consensus 165 ~~N~~ip~~~~l~~~~~~~~~~~~~~P~~~~~~~g~~v~~~~d~~f-~~P~~~i~~~~~~~~~~~~~~~~~~~~l~~~~l 243 (640)
++|||||+||+++..+ .....|+++.+++|++|||++|+.| ..|++.+.+.|.+|...+++++.+++.|++.++
T Consensus 502 ~~n~fip~~~~~~~~~-----~~~~~p~~i~~~~g~~vw~~~d~~f~~~Pk~~i~~~~~~~~~~~~~~~~~l~~L~~~ll 576 (961)
T PRK15101 502 ELNPYIPDDFSLIKAD-----KAYKHPELIVDEPGLRVVYMPSQYFADEPKADISLVLRNPKAMDSARNQVLFALNDYLA 576 (961)
T ss_pred CCCCccCCCCeeccCC-----CCCCCCeEEEcCCCeEEEEeCCCccccCCCEEEEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 9999999999987654 1234699999999999999999999 599999999999999889999999999999999
Q ss_pred HHHHhhhhhcccccccEEEEEEecceeEEEEeecCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcccc-Cccc
Q 006560 244 KDELNEIIYQASVAKLETSVSIFSDKLELKVYGFNDKLPVLLSKILAIAKSFLPSDDRFKVIKEDVVRTLKNTNM-KPLS 322 (640)
Q Consensus 244 ~~~l~~~~~~a~~ag~~~~~~~~~~g~~i~~~g~s~~l~~~l~~~~~~l~~~~~~~~~f~~~k~~~~~~l~~~~~-~p~~ 322 (640)
+..+.+..|.+.++|++++++ +.+|+.++++|++++++.+++.+++.+.+|.+++++|+++|+.+++++++... .|+.
T Consensus 577 ~~~l~e~~y~a~~aG~~~~~~-~~~g~~i~v~g~s~~l~~ll~~l~d~l~~~~~~~~~fe~~k~~~~~~l~~~~~~~~~~ 655 (961)
T PRK15101 577 GLALDQLSNQASVGGISFSTN-ANNGLMVNANGYTQRLPQLLQALLEGYFSFTPTEEQLAQAKSWYREQLDSAEKGKAYE 655 (961)
T ss_pred HHHHHHHhchHHhcCcEEEEc-cCCCEEEEEEecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcccCcHH
Confidence 999999999999999999999 79999999999999999999999999999999999999999999999998775 5766
Q ss_pred hHHHHHHHhccCCCCCHHHHHhhhccCCHHHHHHHHHHHHhcceeEEEEeccCCHHHHHHHHHHHHhhcCCCCCCccccc
Q 006560 323 HSSYLRLQVLCQSFYDVDEKLSILHGLSLADLMAFIPELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSVQPLPIEMRH 402 (640)
Q Consensus 323 ~a~~~~~~~l~~~~~~~~~~~~~l~~it~ed~~~~~~~~~~~~~~~~~v~Gni~~~~~~~l~~~~~~~l~~~~~~~~~~~ 402 (640)
++...+..+...+.++..++.++|+++|++|+++|++++|.+.+++++|+||++.+++.++++.+.+.++..+.. ..
T Consensus 656 ~~~~~~~~~~~~py~~~~~~~~~l~~it~edl~~f~~~~~~~~~~~~~v~GNi~~~ea~~l~~~~~~~l~~~~~~---~~ 732 (961)
T PRK15101 656 QAIMPAQMLSQVPYFERDERRKLLPSITLKDVLAYRDALLSGATPEFLVVGNLTEEQVTTLARDVQKQLGADGTE---WW 732 (961)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhceEEEEEEcCCCHHHHHHHHHHHHHHhccCCcc---cc
Confidence 666554444445556678899999999999999999999999999999999999999999999888888653221 11
Q ss_pred cceEEEcCCCCeEEEEeecCCCCCCCeEEEEEEecccccCcchHHHHHHHHHHHHHhchhhHHHHHhhcccceEEEeeee
Q 006560 403 QECVICLPSGANLVRNVSVKNKCETNSVIELYFQIEQEKGMELTRLKALIDLFDEILEEPFFNQLRTKEQLGYVVECSPR 482 (640)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ll~~~l~s~lf~~LR~k~~LgY~v~s~~~ 482 (640)
..+...++.+....+ ....+ ...++++..+++ .|..+....+++.+|++++++|||++||||+||||+|+++..
T Consensus 733 ~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~----~g~~~~~~~v~~~lLg~~~ssrlf~~LRtk~qLgY~V~s~~~ 806 (961)
T PRK15101 733 RGKDVVVDKKQSVNF-EKAGS-STDSALAAVYVP----TGYDEYQSSAYSSLLGQIIQPWFYNQLRTEEQLGYAVFAFPM 806 (961)
T ss_pred cccceEeCCCCeEEE-ecCCC-CCCCeEEEEEEe----CCCCCHHHHHHHHHHHHHHhHHHHHHHHHHhhhceEEEEEee
Confidence 111222333333321 22222 234666667778 787778889999999999999999999999999999999988
Q ss_pred eeCceeeEEEEEEcCCCChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhccccc
Q 006560 483 VTYRVFGFCFCIQSSKYNPIYLQERIDNFISGLDELLEGLDDESFENYRSGLMAKLLEKDPSLTYESNRFWNQITDKRYM 562 (640)
Q Consensus 483 ~~~~~~~~~~~vqs~~~~~~~~~~~i~~fl~~~~~~l~~~se~ef~~~k~~l~~~~~~~~~sl~~~~~~~w~~i~~~~~~ 562 (640)
...+..++.++|||+.++|+.+..+|+.|+.++.+.+++||++||+++|+++++++..+++|+.+++.++|..+..++++
T Consensus 807 ~~~~~~~~~~~vqs~~~~~~~l~~~i~~f~~~~~~~l~~lt~eE~~~~k~~l~~~~~~~~~sl~~~a~~~~~~i~~~~~~ 886 (961)
T PRK15101 807 SVGRQWGMGFLLQSNDKQPAYLWQRYQAFFPQAEAKLRAMKPEEFAQYQQALINQLLQAPQTLGEEASRLSKDFDRGNMR 886 (961)
T ss_pred ccCCeeeEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCC
Confidence 88888999999999988999999999999999876678999999999999999999999999999999999999888899
Q ss_pred cccchHhHHHHhcCCHHHHHHHHHHH-cccCCCCcceEEEEEecCCCCcccccccCCCceeecChHHHhccCc
Q 006560 563 FDQSQKEAEDLKSIKKNDVISWYKTY-LQQWSPKCRRLAVRVWGCNTNIKESEKHSKSALVIKDLTAFKLSSE 634 (640)
Q Consensus 563 f~~~~~~~~~l~~vT~~dv~~~~~~~-l~~~~~~~~~l~i~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (640)
|++.+++++.|++||++||+++++++ +.+ ++.++++++.|..+........ .+...++|+..||....
T Consensus 887 fd~~~~~~~~i~~vT~edv~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 955 (961)
T PRK15101 887 FDSRDKIIAQIKLLTPQKLADFFHQAVIEP---QGLAILSQISGSQNGKADYAHP-KGWKTWENVSALQQTLP 955 (961)
T ss_pred cChHHHHHHHHHcCCHHHHHHHHHHHhcCC---CCCEEEEEeeccCccccccccc-cCCeeeCCHHHHhhcCc
Confidence 99999999999999999999999998 655 3558999999997632211111 23567999999986643
No 4
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only]
Probab=100.00 E-value=2e-31 Score=283.92 Aligned_cols=407 Identities=13% Similarity=0.064 Sum_probs=309.3
Q ss_pred CeEeecCCceEEEeeccCcccCcceEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHhh-----hhhcccccccEEEEEE
Q 006560 191 PTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELNE-----IIYQASVAKLETSVSI 265 (640)
Q Consensus 191 P~~~~~~~g~~v~~~~d~~f~~P~~~i~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-----~~~~a~~ag~~~~~~~ 265 (640)
.......||++++..++++ +|.+.+.+.+..+...+++...++++++.+|+.++... ....-+..|.......
T Consensus 17 ~~~~~L~nGl~~~~~~~~~--~~~vs~~~~v~~Gs~~e~~~~~G~AH~lehm~fkgt~~~~~~~i~~~~~~~G~~~na~t 94 (438)
T COG0612 17 LQVFTLPNGLRVITYPNPT--APTVSLDVWVKAGSRAEPAGKAGIAHFLEHMAFKGTTGLPSAELAEAFEKLGGQLNAFT 94 (438)
T ss_pred ceEEEcCCCCEEEEEeCCC--CCEEEEEEEEeecccCCCCCcccHHHHHHHHHccCCCCCChHHHHHHHHHhcCeeeccc
Confidence 5667789999999999887 78999999999888888888899999999999776332 3333344566666666
Q ss_pred ecceeEEEEeecCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhccccCccchHHHHHHHhccCCC---CCHHHH
Q 006560 266 FSDKLELKVYGFNDKLPVLLSKILAIAKSFLPSDDRFKVIKEDVVRTLKNTNMKPLSHSSYLRLQVLCQSF---YDVDEK 342 (640)
Q Consensus 266 ~~~g~~i~~~g~s~~l~~~l~~~~~~l~~~~~~~~~f~~~k~~~~~~l~~~~~~p~~~a~~~~~~~l~~~~---~~~~~~ 342 (640)
+.+.....++..+++++..++++.+.+.+|.|+++.|+++|..++++++...++|...+...+...+++++ +++.|+
T Consensus 95 s~d~t~y~~~~l~~~~~~~l~llad~l~~p~f~~~~~e~Ek~vil~ei~~~~d~p~~~~~~~l~~~~~~~~p~~~~~~G~ 174 (438)
T COG0612 95 SFDYTVYYLSVLPDNLDKALDLLADILLNPTFDEEEVEREKGVILEEIRMRQDDPDDLAFERLLEALYGNHPLGRPILGT 174 (438)
T ss_pred cchhhhhhhhhchhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhhccCCCCCCCCCC
Confidence 66555556665778999999999999999999999999999999999999999999999999999998643 467789
Q ss_pred HhhhccCCHHHHHHHHHHHHhcceeEEEEeccCCHHHHHHHHHHHHhhcCCCCCCccccccceEEEcCCCCeEEEEeecC
Q 006560 343 LSILHGLSLADLMAFIPELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSVQPLPIEMRHQECVICLPSGANLVRNVSVK 422 (640)
Q Consensus 343 ~~~l~~it~ed~~~~~~~~~~~~~~~~~v~Gni~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 422 (640)
.+.|+++|.+|+++||+++|++.+++++|+||++.+++..++++.++.++.. .+....+. ....... ... .+..+
T Consensus 175 ~e~I~~it~~dl~~f~~k~Y~p~n~~l~vvGdi~~~~v~~~~~~~f~~~~~~-~~~~~~~~--~~~~~~~-~~~-~~~~~ 249 (438)
T COG0612 175 EESIEAITREDLKDFYQKWYQPDNMVLVVVGDVDAEEVVELIEKYFGDLPGA-APPPKIPP--EPPLGPE-RVV-RVNDP 249 (438)
T ss_pred HHHHHhCCHHHHHHHHHHhcCcCceEEEEecCCCHHHHHHHHHHHHccCCcc-CCCCCCCC--ccccCCC-ceE-EecCC
Confidence 9999999999999999999999999999999999999999999999888851 11111111 1111122 111 12111
Q ss_pred -CCCCCCeEEEEEEecccccCc-chHHHHHHHHHHHHHhchhhHHHHHhhcccceEEEeeeeeeCceeeEEEEEEcCCCC
Q 006560 423 -NKCETNSVIELYFQIEQEKGM-ELTRLKALIDLFDEILEEPFFNQLRTKEQLGYVVECSPRVTYRVFGFCFCIQSSKYN 500 (640)
Q Consensus 423 -~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~ll~~~l~s~lf~~LR~k~~LgY~v~s~~~~~~~~~~~~~~vqs~~~~ 500 (640)
.+.-..+.+...++.+...+. ......+++.++++.++||+|.++|++++|+|+++++.........+.+++.....+
T Consensus 250 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~llgg~~~SrLf~~~re~~glay~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (438)
T COG0612 250 EQPDLEQAWLALGYPGPDYDSPDDYAALLLLNGLLGGGFSSRLFQELREKRGLAYSVSSFSDFLSDSGLFSIYAGTAPEN 329 (438)
T ss_pred CCchhhhhhhhccccCcCcCcchhhHHHHHHHHHhCCCcchHHHHHHHHhcCceeeeccccccccccCCceEEEEecCCC
Confidence 112223333333331110011 112334556666666789999999999999999997655554445555666655568
Q ss_pred hhhHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhccccccccchHhHHHHhcCCHH
Q 006560 501 PIYLQERIDNFISGLDELL-EGLDDESFENYRSGLMAKLLEKDPSLTYESNRFWNQITDKRYMFDQSQKEAEDLKSIKKN 579 (640)
Q Consensus 501 ~~~~~~~i~~fl~~~~~~l-~~~se~ef~~~k~~l~~~~~~~~~sl~~~~~~~w~~i~~~~~~f~~~~~~~~~l~~vT~~ 579 (640)
++.+.+.|++.+..+.+.+ ..++++++++.|..+.+.+....++....++.++.....+ ......+++.+.|++||++
T Consensus 330 ~~~~~~~i~~~~~~~~~~~~~~~t~~~~~~~k~~~~~~~~~~~~s~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~vt~~ 408 (438)
T COG0612 330 PEKTAELVEEILKALKKGLKGPFTEEELDAAKQLLIGLLLLSLDSPSSIAELLGQYLLLG-GSLITLEELLERIEAVTLE 408 (438)
T ss_pred hhhHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHhc-CCccCHHHHHHHHHhcCHH
Confidence 8888889999888876644 3489999999999999999999999999999887766543 2346667899999999999
Q ss_pred HHHHHHHHHcccCCCCcceEEEEEecCCCCc
Q 006560 580 DVISWYKTYLQQWSPKCRRLAVRVWGCNTNI 610 (640)
Q Consensus 580 dv~~~~~~~l~~~~~~~~~l~i~v~g~~~~~ 610 (640)
||.+++++++.+. ..++.++|+....
T Consensus 409 dv~~~a~~~~~~~-----~~~~~~~~p~~~~ 434 (438)
T COG0612 409 DVNAVAKKLLAPE-----NLTIVVLGPEKAL 434 (438)
T ss_pred HHHHHHHHhcCCC-----CcEEEEEcccccc
Confidence 9999999999864 4888888886543
No 5
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF. In a subset of species that make coenzyme PQQ (pyrrolo-quinoline-quinone), this probable peptidase is found in the PQQ biosynthesis region and is thought to act as a protease on PqqA (TIGR02107), a probable peptide precursor of the coenzyme. PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=99.93 E-value=1.7e-23 Score=227.12 Aligned_cols=327 Identities=10% Similarity=-0.026 Sum_probs=236.1
Q ss_pred eecCCceEEEeeccCcccCcceEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHhhhhh----c--ccccccEEEEEEec
Q 006560 194 IIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELNEIIY----Q--ASVAKLETSVSIFS 267 (640)
Q Consensus 194 ~~~~~g~~v~~~~d~~f~~P~~~i~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~----~--a~~ag~~~~~~~~~ 267 (640)
++.+||++|++.+++. .|.+.+.+.+..|...+.....++++++..|+..+...... . .+-.|.+++.+.+.
T Consensus 3 ~tL~NGLrVllv~~p~--~p~vav~l~v~aGS~~Ep~~~~GLAHfLEHMLFkGT~~~~~~~~i~~~le~lGG~lNA~Ts~ 80 (696)
T TIGR02110 3 ITLPNGLRVHLYHQPD--AKRAAALLRVAAGSHDEPSAWPGLAHFLEHLLFLGGERFQGDDRLMPWVQRQGGQVNATTLE 80 (696)
T ss_pred EEcCCCCEEEEEECCC--CCEEEEEEEEeeccCCCCCCCCcHHHHHHHHHhcCCCCCCcHHHHHHHHHHhCCeEEEEEcC
Confidence 4678999999999886 78999999999988778788899999999999876543221 1 12337788888888
Q ss_pred ceeEEEEeecCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhccccCccchHHHHHHHhccCC-CC--CHHHHHh
Q 006560 268 DKLELKVYGFNDKLPVLLSKILAIAKSFLPSDDRFKVIKEDVVRTLKNTNMKPLSHSSYLRLQVLCQS-FY--DVDEKLS 344 (640)
Q Consensus 268 ~g~~i~~~g~s~~l~~~l~~~~~~l~~~~~~~~~f~~~k~~~~~~l~~~~~~p~~~a~~~~~~~l~~~-~~--~~~~~~~ 344 (640)
+...+.++..+++++..++.+.+++.+|.|++++|+++|+.++.+++...++|...+.+.+...+++. +| ...|..+
T Consensus 81 d~T~y~~~v~~~~l~~aL~lLaD~l~~P~f~eeeierEr~vvl~Ei~~~~ddp~~~~~~~l~~~l~~~HPy~~~~iGt~e 160 (696)
T TIGR02110 81 RTTAFFFELPAAALAAGLARLCDMLARPLLTAEDQQREREVLEAEYIAWQNDADTLREAALLDALQAGHPLRRFHAGSRD 160 (696)
T ss_pred CeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCCCCCCCCCHH
Confidence 99999999999999999999999999999999999999999999999888899988888888888854 23 4567778
Q ss_pred hhccCC---HHHHHHHHHHHHhcceeEEEEeccCCHHHHHHHHHHHHhhcCCCCCCccccccceEEEcCCCCeEEEEeec
Q 006560 345 ILHGLS---LADLMAFIPELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSVQPLPIEMRHQECVICLPSGANLVRNVSV 421 (640)
Q Consensus 345 ~l~~it---~ed~~~~~~~~~~~~~~~~~v~Gni~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 421 (640)
+|+.++ .+|+++||+++|.+.|++++|+||++.+++.++++++++.++.++.+....+ .....+.... +..
T Consensus 161 sL~~it~~t~edL~~F~~~~Y~p~NmvLvIvGdvs~eel~~l~e~~f~~~~~~~~~~~~~~----~p~~~~~~~~--~~~ 234 (696)
T TIGR02110 161 SLALPNTAFQQALRDFHRRHYQAGNMQLWLQGPQSLDELEQLAARFGASLAAGGECAQAPP----APLLRFDRLT--LAG 234 (696)
T ss_pred HHhCcccchHHHHHHHHHHhcchhcEEEEEEeCCCHHHHHHHHHHHhCCCCCCCCCCCCCC----CCCCCCceeE--EEe
Confidence 887765 9999999999999999999999999999999999999887765432211011 0011111122 111
Q ss_pred CCCCCCCeEEEEEEecccccCc-chHHHHHHHHHHHHHhchhhHHHHHhhcccceEEEeeeeeeC-ceeeEEEEEEcC--
Q 006560 422 KNKCETNSVIELYFQIEQEKGM-ELTRLKALIDLFDEILEEPFFNQLRTKEQLGYVVECSPRVTY-RVFGFCFCIQSS-- 497 (640)
Q Consensus 422 ~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~ll~~~l~s~lf~~LR~k~~LgY~v~s~~~~~~-~~~~~~~~vqs~-- 497 (640)
. ...+..+.+.++ . .+. ......++..+|++.++|++|.+||+ ++|+|+|++...... +...+.+++...
T Consensus 235 ~--~~~q~~l~~~~p--~-~~~~d~~al~lL~~iLg~g~sSrL~~~LRe-~GLaysV~s~~~~~~~g~~lf~I~~~lt~~ 308 (696)
T TIGR02110 235 G--SEPRLWLLFALA--G-LPATARDNVTLLCEFLQDEAPGGLLAQLRE-RGLAESVAATWLYQDAGQALLALEFSARCI 308 (696)
T ss_pred c--CcceEEEEEeec--C-CCCCChHHHHHHHHHhCCCcchHHHHHHHH-CCCEEEEEEeccccCCCCcEEEEEEEEcCC
Confidence 1 123333433333 1 111 11223556677777788999999996 899999998652222 222344455431
Q ss_pred -CCChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 006560 498 -KYNPIYLQERIDNFISGLDELLEGLDDESFENYRSGL 534 (640)
Q Consensus 498 -~~~~~~~~~~i~~fl~~~~~~l~~~se~ef~~~k~~l 534 (640)
..+.+.+.+.|.+.+..+.+..-+++.+|+.++|+.-
T Consensus 309 ~~~~~~~v~~~i~~~L~~L~~~~~~~~~eel~rlk~~~ 346 (696)
T TIGR02110 309 SAAAAQQIEQLLTQWLGALAEQTWAEQLEHYAQLAQRR 346 (696)
T ss_pred CccCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhh
Confidence 1244455555555555444311278999999999863
No 6
>PRK15101 protease3; Provisional
Probab=99.92 E-value=4.1e-23 Score=241.65 Aligned_cols=403 Identities=10% Similarity=0.014 Sum_probs=281.6
Q ss_pred CCCeEeecCCceEEEeeccCcccCcceEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHhhh----hhccc--ccccEEE
Q 006560 189 TSPTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELNEI----IYQAS--VAKLETS 262 (640)
Q Consensus 189 ~~P~~~~~~~g~~v~~~~d~~f~~P~~~i~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~----~~~a~--~ag~~~~ 262 (640)
...+.++.+||++|++.+|+. .|++.+.+.+..|...+.....|+++++.+|+..+.... .+... ..|.+++
T Consensus 42 ~~~~~~~L~NGL~v~l~~~~~--~~~~~~~l~v~~Gs~~ep~~~~GlAHflEHmlf~GT~~~p~~~~~~~~l~~~Gg~~N 119 (961)
T PRK15101 42 RQYQAIRLDNGMTVLLVSDPQ--AVKSLAALALPVGSLEDPDAQQGLAHYLEHMVLMGSKKYPQPDSLAEFLKKHGGSHN 119 (961)
T ss_pred cceEEEEeCCCCEEEEEeCCC--CcceeEEEEeCcCCCCCCCCCCchHHHHHHHHhcCCccCCCcchHHHHHHHhCCCcc
Confidence 346778899999999999986 789999999999887777778899999999997765432 12222 2366777
Q ss_pred EEEecceeEEEEeecCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhccccCccchHHHHHHHhccCCC---CCH
Q 006560 263 VSIFSDKLELKVYGFNDKLPVLLSKILAIAKSFLPSDDRFKVIKEDVVRTLKNTNMKPLSHSSYLRLQVLCQSF---YDV 339 (640)
Q Consensus 263 ~~~~~~g~~i~~~g~s~~l~~~l~~~~~~l~~~~~~~~~f~~~k~~~~~~l~~~~~~p~~~a~~~~~~~l~~~~---~~~ 339 (640)
.+.+.+.....++..+++++.+|+.+.+.+.+|.|+++.++++|..+..+++...++|...+...+...+++.+ +..
T Consensus 120 A~T~~d~T~y~~~~~~~~l~~aL~~~ad~~~~P~f~~~~~erE~~~v~~E~~~~~~~~~~~~~~~~~~~~~~~hp~~~~~ 199 (961)
T PRK15101 120 ASTASYRTAFYLEVENDALPPAVDRLADAIAEPLLDPKNADRERNAVNAELTMARSRDGMRMAQVSAETINPAHPGSRFS 199 (961)
T ss_pred ceECCCceEEEEEcCHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhCCCCCCcccCC
Confidence 88888888888988999999999999999999999999999999999999998777888888888887887542 345
Q ss_pred HHHHhhhccC----CHHHHHHHHHHHHhcceeEEEEeccCCHHHHHHHHHHHHhhcCCCCCCccccccceEEEcCCCCeE
Q 006560 340 DEKLSILHGL----SLADLMAFIPELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSVQPLPIEMRHQECVICLPSGANL 415 (640)
Q Consensus 340 ~~~~~~l~~i----t~ed~~~~~~~~~~~~~~~~~v~Gni~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~ 415 (640)
.|..++|+.+ +.+++++||+++|.+.++.++|+||++.+++.++++++++.++....+....+.........+ ..
T Consensus 200 ~G~~etl~~~~~~~~~~~L~~f~~~~Y~p~nm~lvv~G~~~~~~l~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~-~~ 278 (961)
T PRK15101 200 GGNLETLSDKPGSKLQDALVDFYQRYYSANLMKAVIYSNQPLPELAKLAADTFGRVPNKNASVPEITVPVVTDAQKG-II 278 (961)
T ss_pred CCCHHHhhcCCchHHHHHHHHHHHHhCcccceEEEEEcCCCHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCHHHcC-eE
Confidence 6788899887 699999999999999999999999999999999999988888754321111110000000112 12
Q ss_pred EEEeecCCCCCCCeEEEEEEecccccCc-chHHHHHHHHHHHHHhchhhHHHHHhhcccceEEEeeeeee--CceeeEEE
Q 006560 416 VRNVSVKNKCETNSVIELYFQIEQEKGM-ELTRLKALIDLFDEILEEPFFNQLRTKEQLGYVVECSPRVT--YRVFGFCF 492 (640)
Q Consensus 416 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~ll~~~l~s~lf~~LR~k~~LgY~v~s~~~~~--~~~~~~~~ 492 (640)
+ ... + ..+++.+.+.|.+|..... ......++..+|++..++.|+..|+ ++||+|+|+++.... .+...+.+
T Consensus 279 ~-~~~-~--~~~~~~l~l~~~~p~~~~~~~~~~~~~l~~ll~~~~~g~l~~~L~-~~gla~~v~s~~~~~~~~~~g~f~i 353 (961)
T PRK15101 279 I-HYV-P--AQPRKVLRVEFRIDNNSAKFRSKTDEYISYLIGNRSPGTLSDWLQ-KQGLAEGISAGADPMVDRNSGVFAI 353 (961)
T ss_pred E-EEE-E--CCCCcEEEEEEecCCcHHHHhhCHHHHHHHHhcCCCCCcHHHHHH-HcCccceeeeccccccCCCceEEEE
Confidence 2 111 1 2344556666773211001 1112345666777766778888886 899999999876543 22333445
Q ss_pred EEEcCCCChhhHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhcCCC-CChhHHHHHHHHHHhccccccccchHhH
Q 006560 493 CIQSSKYNPIYLQERIDNFISGLDELL-EGLDDESFENYRSGLMAKLLEKD-PSLTYESNRFWNQITDKRYMFDQSQKEA 570 (640)
Q Consensus 493 ~vqs~~~~~~~~~~~i~~fl~~~~~~l-~~~se~ef~~~k~~l~~~~~~~~-~sl~~~~~~~w~~i~~~~~~f~~~~~~~ 570 (640)
+++......+.+.+.++.++.++.... .++++++|+++|+.+..++.... .+..+.+..+...+. .+.+.......
T Consensus 354 ~~~~~~~~~~~~~~v~~~i~~~i~~l~~~g~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~ 431 (961)
T PRK15101 354 SVSLTDKGLAQRDQVVAAIFSYLNLLREKGIDKSYFDELAHVLDLDFRYPSITRDMDYIEWLADTML--RVPVEHTLDAP 431 (961)
T ss_pred EEEcChHHHHhHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhccccCCCCCChHHHHHHHHHHhh--hCCHHHheeCc
Confidence 555421111356677777777776655 79999999999999888774332 222223333333332 23333333445
Q ss_pred HHHhcCCHHHHHHHHHHHcccCCCCcceEEEEEecCC
Q 006560 571 EDLKSIKKNDVISWYKTYLQQWSPKCRRLAVRVWGCN 607 (640)
Q Consensus 571 ~~l~~vT~~dv~~~~~~~l~~~~~~~~~l~i~v~g~~ 607 (640)
..++.++.++|.++++. +.|+ .+.+.++++.
T Consensus 432 ~~~~~~~~~~i~~~~~~-l~~~-----n~~i~~~~~~ 462 (961)
T PRK15101 432 YIADRYDPKAIKARLAE-MTPQ-----NARIWYISPQ 462 (961)
T ss_pred hhhhcCCHHHHHHHHhh-cCHh-----HEEEEEEeCC
Confidence 77889999999999876 7763 4555555554
No 7
>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=3.4e-21 Score=185.11 Aligned_cols=403 Identities=11% Similarity=0.044 Sum_probs=300.7
Q ss_pred eEeecCCceEEEeeccCcccCcceEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhccc-----ccccEEEEEEe
Q 006560 192 TCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELNEIIYQAS-----VAKLETSVSIF 266 (640)
Q Consensus 192 ~~~~~~~g~~v~~~~d~~f~~P~~~i~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~a~-----~ag~~~~~~~~ 266 (640)
++....||++|---.+ ..+.+.+.+-|+++..++++++.+.+.++..|...+.......+. --|..++.+.+
T Consensus 35 ~vttL~NGlrVaTE~~---~a~TATVGVwidaGSR~EnekNNG~ahFLEhlaFKGT~~Rs~~alElEieniGahLNAytS 111 (467)
T KOG0960|consen 35 EVTTLPNGLRVATEHN---SASTATVGVWIDAGSRFENEKNNGTAHFLEHLAFKGTKNRSQAALELEIENIGAHLNAYTS 111 (467)
T ss_pred eEEEcCCCcEEEeccC---CCcceEEEEEeccCccccccccccHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHhccccc
Confidence 3455789998877654 367899999999999999999999999999998766554322221 12566667777
Q ss_pred cceeEEEEeecCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhccccCccchHHHHHHHhccCCC---CCHHHHH
Q 006560 267 SDKLELKVYGFNDKLPVLLSKILAIAKSFLPSDDRFKVIKEDVVRTLKNTNMKPLSHSSYLRLQVLCQSF---YDVDEKL 343 (640)
Q Consensus 267 ~~g~~i~~~g~s~~l~~~l~~~~~~l~~~~~~~~~f~~~k~~~~~~l~~~~~~p~~~a~~~~~~~l~~~~---~~~~~~~ 343 (640)
.......+..++.+++..++.+.|.+++..+.+..++++|..++++.+....+-....++.+....|.+. .+..|..
T Consensus 112 ReqT~yyakal~~dv~kavdiLaDIlqns~L~~s~IerER~vILrEmqevd~~~~eVVfdhLHatafQgtPL~~tilGp~ 191 (467)
T KOG0960|consen 112 REQTVYYAKALSKDVPKAVDILADILQNSKLEESAIERERDVILREMQEVDKNHQEVVFDHLHATAFQGTPLGRTILGPS 191 (467)
T ss_pred ccceeeehhhccccchHHHHHHHHHHHhCccchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcCCcccccccChh
Confidence 7788888999999999999999999999999999999999999999987766544567888887777543 5677889
Q ss_pred hhhccCCHHHHHHHHHHHHhcceeEEEEeccCCHHHHHHHHHHHHhhcCCCCCCccccccceEEEcCCCCeEEEEeecCC
Q 006560 344 SILHGLSLADLMAFIPELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSVQPLPIEMRHQECVICLPSGANLVRNVSVKN 423 (640)
Q Consensus 344 ~~l~~it~ed~~~~~~~~~~~~~~~~~v~Gni~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 423 (640)
+.|++|+.+|+.+|.+..|.+.++++..+|+++-+++.++++++++.++....+.. .|....... .|..+. . .+
T Consensus 192 enI~si~r~DL~~yi~thY~~~RmVlaaaGgV~He~lv~la~k~fg~~~~~~~~~~-~~~~~~~~F-tgsEvR--~--rd 265 (467)
T KOG0960|consen 192 ENIKSISRADLKDYINTHYKASRMVLAAAGGVKHEELVKLAEKYFGDLSKLQTGDK-VPLVPPARF-TGSEVR--V--RD 265 (467)
T ss_pred hhhhhhhHHHHHHHHHhcccCccEEEEecCCcCHHHHHHHHHHHcCCCcccccCcC-CCCCCCccc-cCceee--e--cC
Confidence 99999999999999999999999999999999999999999999888664322110 010000011 122222 1 22
Q ss_pred CCCCCeEEEEEEecccccCcchHHHHHHHHHHHHH---------hchhhHHHHHhhcccceEEEeeeeeeCceeeEEEEE
Q 006560 424 KCETNSVIELYFQIEQEKGMELTRLKALIDLFDEI---------LEEPFFNQLRTKEQLGYVVECSPRVTYRVFGFCFCI 494 (640)
Q Consensus 424 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ll~~~---------l~s~lf~~LR~k~~LgY~v~s~~~~~~~~~~~~~~v 494 (640)
++-|.+.+.+..-.+.+..++++...+++.+++.+ .+|+|-+.+-.. +|+=+..++...+..++-+++|.
T Consensus 266 d~lP~a~~AiAVEG~~w~~pD~~~l~van~iiG~wdr~~g~g~~~~s~La~~~~~~-~l~~sfqsFnt~YkDTGLwG~y~ 344 (467)
T KOG0960|consen 266 DDLPLAHIAIAVEGVSWAHPDYFALMVANTIIGNWDRTEGGGRNLSSRLAQKIQQD-QLCHSFQSFNTSYKDTGLWGIYF 344 (467)
T ss_pred CCCchhheeeeEecCCcCCccHHHHHHHHHHhhhhhcccCCccCCccHHHHHHHHH-HHHHHHhhhhcccccccceeEEE
Confidence 23354545444443222444555566666666653 367898888876 67766666655554444444444
Q ss_pred EcCCCChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhccccccccchHhHHHHh
Q 006560 495 QSSKYNPIYLQERIDNFISGLDELLEGLDDESFENYRSGLMAKLLEKDPSLTYESNRFWNQITDKRYMFDQSQKEAEDLK 574 (640)
Q Consensus 495 qs~~~~~~~~~~~i~~fl~~~~~~l~~~se~ef~~~k~~l~~~~~~~~~sl~~~~~~~w~~i~~~~~~f~~~~~~~~~l~ 574 (640)
-.. ++..++..|...+.++.++...+|+.|.+++|+.|..++....++..-.++....+++..+-. -...++-+.|+
T Consensus 345 V~~--~~~~iddl~~~vl~eW~rL~~~vteaEV~RAKn~Lkt~Lll~ldgttpi~ediGrqlL~~Grr-i~l~El~~rId 421 (467)
T KOG0960|consen 345 VTD--NLTMIDDLIHSVLKEWMRLATSVTEAEVERAKNQLKTNLLLSLDGTTPIAEDIGRQLLTYGRR-IPLAELEARID 421 (467)
T ss_pred Eec--ChhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhhcCCc-CChHHHHHHHh
Confidence 432 788899999999999988778999999999999999999988777767788887777664322 22456788999
Q ss_pred cCCHHHHHHHHHHHcccCCCCcceEEEEEecCCCCccc
Q 006560 575 SIKKNDVISWYKTYLQQWSPKCRRLAVRVWGCNTNIKE 612 (640)
Q Consensus 575 ~vT~~dv~~~~~~~l~~~~~~~~~l~i~v~g~~~~~~~ 612 (640)
+||.++|++++.+|+-. +.+.+..+|+-..+++
T Consensus 422 ~vt~~~Vr~va~k~iyd-----~~iAia~vG~ie~lpd 454 (467)
T KOG0960|consen 422 AVTAKDVREVASKYIYD-----KDIAIAAVGPIEGLPD 454 (467)
T ss_pred hccHHHHHHHHHHHhhc-----CCcceeeecccccCch
Confidence 99999999999999964 4799999999766643
No 8
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.8e-19 Score=173.61 Aligned_cols=398 Identities=9% Similarity=0.028 Sum_probs=292.1
Q ss_pred eEeecCCceEEEeeccCcccCcceEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHh-----hhhhcccccccEEEEEEe
Q 006560 192 TCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELN-----EIIYQASVAKLETSVSIF 266 (640)
Q Consensus 192 ~~~~~~~g~~v~~~~d~~f~~P~~~i~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-----~~~~~a~~ag~~~~~~~~ 266 (640)
++-+..||+++--.+ +++ |-+.+.+.++++..++.+.-.+.++++..+.-.+.. +....-+.-|-.++.+++
T Consensus 26 kvttL~NGlkvase~--~pg-~f~~vGlyIdsGsrYE~~~~~GisH~lerLAF~ST~~~~~~ei~~~LE~~GGn~~cqsS 102 (472)
T KOG2067|consen 26 KVTTLPNGLKVASEN--TPG-QFCTVGLYIDSGSRYEAKYFSGISHFLERLAFKSTERFSSKEILAELEKLGGNCDCQSS 102 (472)
T ss_pred eeeecCCccEEeccC--CCC-CceEEEEEEecCccccCcCcccHHHHHHHHhhccccCCcHHHHHHHHHHhCCccccccc
Confidence 344578998886654 333 568999999999999988888999999888754322 222222334667888888
Q ss_pred cceeEEEEeecCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhccccCccchHHHHHHHhccCCC---CCHHHHH
Q 006560 267 SDKLELKVYGFNDKLPVLLSKILAIAKSFLPSDDRFKVIKEDVVRTLKNTNMKPLSHSSYLRLQVLCQSF---YDVDEKL 343 (640)
Q Consensus 267 ~~g~~i~~~g~s~~l~~~l~~~~~~l~~~~~~~~~f~~~k~~~~~~l~~~~~~p~~~a~~~~~~~l~~~~---~~~~~~~ 343 (640)
.+.....++.+++.++.++++++|.+.+|.|++++.+.+|..+.-++.....+|.....+.+....|.+. .+.....
T Consensus 103 Retm~Yaas~~~~~v~sm~~lLadtV~~P~~~d~ev~~~~~~v~~E~~el~~~Pe~lL~e~iH~Aay~~ntlg~pl~cp~ 182 (472)
T KOG2067|consen 103 RETMMYAASADSDGVDSMVELLADTVLNPKFTDQEVEEARRAVKYEIEELWMRPEPLLTEMIHSAAYSGNTLGLPLLCPE 182 (472)
T ss_pred HhhhHHHHHhhhcccHHHHHHHHHHHhcccccHHHHHHHHHhhhheccccccCchhhHHHHHHHHHhccCcccccccCCh
Confidence 8888888999999999999999999999999999999999988777776667887777777777777542 2333346
Q ss_pred hhhccCCHHHHHHHHHHHHhcceeEEEEeccCCHHHHHHHHHHHHhhcCCCCCCccccccceEEEcCCCCeEEEEeecCC
Q 006560 344 SILHGLSLADLMAFIPELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSVQPLPIEMRHQECVICLPSGANLVRNVSVKN 423 (640)
Q Consensus 344 ~~l~~it~ed~~~~~~~~~~~~~~~~~v~Gni~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 423 (640)
+.+.+|+.+.+..|.+.+|.|.++++..+| ++.+++.++++++++.++....|.-..+ ..+...|... ++..-
T Consensus 183 ~~i~~I~~~~l~~yl~~~ytp~rmVlA~vG-V~heelv~~~~~~~~~~~s~~~p~i~~~---~aQYtGG~~~---~~~d~ 255 (472)
T KOG2067|consen 183 ENIDKINREVLEEYLKYFYTPERMVLAGVG-VEHEELVEIAEKLLGDLPSTKVPPIDES---KAQYTGGELK---IDTDA 255 (472)
T ss_pred hhhhhhhHHHHHHHHHhcCChhheEeeecC-CCHHHHHHHHHHHhccCCccCCCCcccc---hhhccccccc---cCCCC
Confidence 889999999999999999999999999999 7999999999999888876432221000 1111111100 11110
Q ss_pred CC----CCCeEEEEEEecccccCcchHHHHHHHHHHHHH---------------hchhhHHHHHhhcccceEEEeeeeee
Q 006560 424 KC----ETNSVIELYFQIEQEKGMELTRLKALIDLFDEI---------------LEEPFFNQLRTKEQLGYVVECSPRVT 484 (640)
Q Consensus 424 ~~----~~~~~v~~~~~~~~~~~~~~~~~~~~~~ll~~~---------------l~s~lf~~LR~k~~LgY~v~s~~~~~ 484 (640)
+. ..-+-+.+.+- ....+.++.+.+.+|+.+ |.||+|.++=.+-+..|++-++..++
T Consensus 256 ~~~~~g~EltHv~lg~E----g~~~~deD~v~~avLq~lmGGGGSFSAGGPGKGMySrLY~~vLNry~wv~sctAfnhsy 331 (472)
T KOG2067|consen 256 PQVTGGPELTHVVLGFE----GCSWNDEDFVALAVLQMLMGGGGSFSAGGPGKGMYSRLYLNVLNRYHWVYSCTAFNHSY 331 (472)
T ss_pred ccccCccceeeeeEeec----cCCCCChhHHHHHHHHHHhcCCcccCCCCCCcchHHHHHHHHHhhhHHHHHhhhhhccc
Confidence 00 01222333444 223333344444444332 45899999999999999999998887
Q ss_pred CceeeEEEEEEcCCCChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhccccccc
Q 006560 485 YRVFGFCFCIQSSKYNPIYLQERIDNFISGLDELLEGLDDESFENYRSGLMAKLLEKDPSLTYESNRFWNQITDKRYMFD 564 (640)
Q Consensus 485 ~~~~~~~~~vqs~~~~~~~~~~~i~~fl~~~~~~l~~~se~ef~~~k~~l~~~~~~~~~sl~~~~~~~w~~i~~~~~~f~ 564 (640)
.+.+-+++++.+ +|+.+.+.++-...++...-.+++++|++|+|.++.+.+.+..++-.-.++..-++++..+. --
T Consensus 332 ~DtGlfgi~~s~---~P~~a~~aveli~~e~~~~~~~v~~~el~RAK~qlkS~LlMNLESR~V~~EDvGRQVL~~g~-rk 407 (472)
T KOG2067|consen 332 SDTGLFGIYASA---PPQAANDAVELIAKEMINMAGGVTQEELERAKTQLKSMLLMNLESRPVAFEDVGRQVLTTGE-RK 407 (472)
T ss_pred cCCceeEEeccC---CHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcccccchhHHHHhHHHHhccC-cC
Confidence 776555555543 78999999999999888777889999999999999999999888766667777777776532 23
Q ss_pred cchHhHHHHhcCCHHHHHHHHHHHcccCCCCcceEEEEEecCCCCcccc
Q 006560 565 QSQKEAEDLKSIKKNDVISWYKTYLQQWSPKCRRLAVRVWGCNTNIKES 613 (640)
Q Consensus 565 ~~~~~~~~l~~vT~~dv~~~~~~~l~~~~~~~~~l~i~v~g~~~~~~~~ 613 (640)
..+++++.|+++|++||.+++++.+.. +.++.-.|+....++-
T Consensus 408 ~p~e~~~~Ie~lt~~DI~rva~kvlt~------~p~va~~Gd~~~lpt~ 450 (472)
T KOG2067|consen 408 PPDEFIKKIEQLTPSDISRVASKVLTG------KPSVAAFGDGTGLPTY 450 (472)
T ss_pred CHHHHHHHHHhcCHHHHHHHHHHHhcC------CceeccCCcccCCcch
Confidence 457899999999999999999999964 5778888887666433
No 9
>PTZ00432 falcilysin; Provisional
Probab=99.82 E-value=8.7e-18 Score=194.69 Aligned_cols=406 Identities=12% Similarity=0.057 Sum_probs=252.0
Q ss_pred EeecCCceEEEeeccCcccCcceEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhc---ccc--ccc--EEEEEE
Q 006560 193 CIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELNEIIYQ---ASV--AKL--ETSVSI 265 (640)
Q Consensus 193 ~~~~~~g~~v~~~~d~~f~~P~~~i~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~---a~~--ag~--~~~~~~ 265 (640)
..+..+|++|++.+.+.-..|.+.+.+.|++|... ..|+++++..++..+....... ..+ .|+ .++...
T Consensus 94 ~~H~~nGl~vl~~~~~d~~~~~~~f~i~f~T~~~d----~~G~aH~LEH~~f~GS~k~p~~~~~~~l~~~gl~~~lNA~T 169 (1119)
T PTZ00432 94 YSHKKTGLQVISLKTNDSSGKEMCFDFYVPTPPHN----DKGIPHILEHSVLSGSKKYNYKDSFSLLVQGGFNSFLNAYT 169 (1119)
T ss_pred EEEcCCCCEEEEEecCCCccceeEEEEEecCCCCC----CcchhHHHHHHHhCCCCCCCcccHHHHHHhcCcCCCccccC
Confidence 34457899999988554223567788888888532 3688999999997665442111 112 232 345556
Q ss_pred ecceeEEEEeecCC-CHHHHHHHHHHHhccCCCCHHHH--HH---------H--------------------HHHHHHHH
Q 006560 266 FSDKLELKVYGFND-KLPVLLSKILAIAKSFLPSDDRF--KV---------I--------------------KEDVVRTL 313 (640)
Q Consensus 266 ~~~g~~i~~~g~s~-~l~~~l~~~~~~l~~~~~~~~~f--~~---------~--------------------k~~~~~~l 313 (640)
+.+.....+...++ ++..++..+++.+.+|.++++.+ .+ . |..+..++
T Consensus 170 ~~D~T~Y~~~~~~e~d~~~~ldv~~d~v~~P~~~~~~~~f~qEgwh~E~~~~~~~~~~~~e~~~~~~~~l~~kgVV~~Em 249 (1119)
T PTZ00432 170 FKDRTSYLFASTNEKDFYNTADVYMDSVFQPNILEDKDIFKQEGWHYKVTKLKDDEKNADELGNVHDRHVSYSGIVYSEM 249 (1119)
T ss_pred CCCceEEEeccCCHHHHHHHHHHHHHHHhCcCcccccchhhhhhhhccccccccccccccccccccccccchhhHHHHHH
Confidence 66777788877776 59999999999999999988753 32 1 66788899
Q ss_pred hccccCccchHHHHHHHhccCCC--CCHHHHHhhhccCCHHHHHHHHHHHHhcceeEEEEeccCCHHHHHHHHHHHHhhc
Q 006560 314 KNTNMKPLSHSSYLRLQVLCQSF--YDVDEKLSILHGLSLADLMAFIPELRSQLYIEGLCHGNLSQEEAIHISNIFKSIF 391 (640)
Q Consensus 314 ~~~~~~p~~~a~~~~~~~l~~~~--~~~~~~~~~l~~it~ed~~~~~~~~~~~~~~~~~v~Gni~~~~~~~l~~~~~~~l 391 (640)
+...++|...+.+.+.+.++..+ ++..|..++|..+|.+++++||+++|.|.++.++++||++.+++.++++++++.+
T Consensus 250 k~~~~~p~~~~~~~~~~~lf~~pY~~~~~G~~~~I~~lt~e~l~~Fh~~~Y~P~N~~l~v~Gdid~~~~l~~l~~~f~~~ 329 (1119)
T PTZ00432 250 KKRFSDPLSFGYSVIYQNLFSNVYKYDSGGDPKDIVELTYEELVEFYKTYYGPKTATVYFYGPNDVTERLEFVDNYLTKH 329 (1119)
T ss_pred HHhhCCHHHHHHHHHHHHHhCCCCCCCCCCChHhhccCCHHHHHHHHHHhcCccceEEEEEcCCCHHHHHHHHHHHHhhc
Confidence 98888999999998888777333 3466889999999999999999999999999999999999999999999988777
Q ss_pred CCCCC-Ccccc---ccceEE--EcCCCCeEEEEeecCCCCCCCeEEEEE-Eeccccc-C-------cchHHHHHHHHHH-
Q 006560 392 SVQPL-PIEMR---HQECVI--CLPSGANLVRNVSVKNKCETNSVIELY-FQIEQEK-G-------MELTRLKALIDLF- 455 (640)
Q Consensus 392 ~~~~~-~~~~~---~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~-~-------~~~~~~~~~~~ll- 455 (640)
+.... +.... +..... ....+...+ ......+...+..++++ |.+++.. + ..+..+..++.+|
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~e~~~l~~~~w~~~p~~~~~~~~~~~~~d~~~~~AL~VLs 408 (1119)
T PTZ00432 330 PKTGQLSHTAYREDADENLLYEEYKDKPKHV-KKKFSSHSEEEENLMSVSWLLNPKHNGSKDYDKSLIDPVDYLALLVLN 408 (1119)
T ss_pred ccccccccccccccccccccccccccCCeEE-EeccCCCccccccEEEEEEEcCCccccccccccccCCHHHHHHHHHHH
Confidence 64311 00000 000000 000111111 11111112223444443 7631100 0 0223444444444
Q ss_pred ---HHHhchhhHHHHHhhcccceEE-EeeeeeeCceeeEEEEEEcCC-CC----hhhHHHHHHHHHHHHHHHh-cCCCHH
Q 006560 456 ---DEILEEPFFNQLRTKEQLGYVV-ECSPRVTYRVFGFCFCIQSSK-YN----PIYLQERIDNFISGLDELL-EGLDDE 525 (640)
Q Consensus 456 ---~~~l~s~lf~~LR~k~~LgY~v-~s~~~~~~~~~~~~~~vqs~~-~~----~~~~~~~i~~fl~~~~~~l-~~~se~ 525 (640)
++..+|+|+++||+ +||||.+ +++.........+.++++... .+ ++.+.+.++.+.+.+.+.. ++++++
T Consensus 409 ~lLggg~sS~L~q~LrE-~GLa~svv~~~~~~~~~~~~f~I~l~g~~~~~~~~~~~~~~ev~~~I~~~L~~l~~eGi~~e 487 (1119)
T PTZ00432 409 YLLLGTPESVLYKALID-SGLGKKVVGSGLDDYFKQSIFSIGLKGIKETNEKRKDKVHYTFEKVVLNALTKVVTEGFNKS 487 (1119)
T ss_pred HHHcCCCccHHHHHHHh-cCCCcCCCcCcccCCCCceEEEEEEEcCChHhccchhhhHHHHHHHHHHHHHHHHHhCCCHH
Confidence 44558999999995 8999996 444443344444555555321 11 1223344444444444433 799999
Q ss_pred HHHHHHHHHHHHhcCCCCC--h--hHHHHHHHHHHhcccccccc--chHhHHHHhc-C--CHHHHHHHHHHHcccCCCCc
Q 006560 526 SFENYRSGLMAKLLEKDPS--L--TYESNRFWNQITDKRYMFDQ--SQKEAEDLKS-I--KKNDVISWYKTYLQQWSPKC 596 (640)
Q Consensus 526 ef~~~k~~l~~~~~~~~~s--l--~~~~~~~w~~i~~~~~~f~~--~~~~~~~l~~-v--T~~dv~~~~~~~l~~~~~~~ 596 (640)
+++++++.+.-.+++...+ . ...+......++.+.-.++. .+..++.|+. + +..-+.+.+++||.. +.
T Consensus 488 ele~a~~qlef~~rE~~~~~~p~gl~~~~~~~~~~~~g~dp~~~l~~~~~l~~lr~~~~~~~~y~e~Li~k~ll~---N~ 564 (1119)
T PTZ00432 488 AVEASLNNIEFVMKELNLGTYPKGLMLIFLMQSRLQYGKDPFEILRFEKLLNELKLRIDNESKYLEKLIEKHLLN---NN 564 (1119)
T ss_pred HHHHHHHHHHHHhhhccCCCCCcHHHHHHHHHHHHhcCCCHHHHHhhHHHHHHHHHHHhcccHHHHHHHHHHccC---CC
Confidence 9999999998888765321 0 11222222222222222221 2334444442 3 235689999999975 34
Q ss_pred ceEEEEEecCC
Q 006560 597 RRLAVRVWGCN 607 (640)
Q Consensus 597 ~~l~i~v~g~~ 607 (640)
.++.+.+.|.+
T Consensus 565 h~~~v~~~p~~ 575 (1119)
T PTZ00432 565 HRVTVHLEAVE 575 (1119)
T ss_pred eeeEEEEecCC
Confidence 57888888887
No 10
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. These metallopeptidases belong to MEROPS peptidase family M16 (clan ME). They include proteins, which are classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. The peptidases in this group of sequences include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The mitochondrial processing peptidase consists of two structurally related domains. One is the active peptidase whereas the other, the C-terminal region, is inactive. The two domains hold the substrate like a clamp [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B 1SQX_B 1NU1_B 1L0L_B 2FYU_B ....
Probab=99.73 E-value=2.1e-16 Score=147.70 Aligned_cols=180 Identities=22% Similarity=0.313 Sum_probs=120.2
Q ss_pred cCCHHHHHHHHHHHHhcceeEEEEeccCCHHHHHHHHHHHHhhcCCCCC--CccccccceEEEcCCCCeEEEEeecCCCC
Q 006560 348 GLSLADLMAFIPELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSVQPL--PIEMRHQECVICLPSGANLVRNVSVKNKC 425 (640)
Q Consensus 348 ~it~ed~~~~~~~~~~~~~~~~~v~Gni~~~~~~~l~~~~~~~l~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 425 (640)
+||.+++++|++++|.+.++.++++||++.+++.++++++++.++..+. +............+.+...+ .... .
T Consensus 1 ~it~e~l~~f~~~~y~p~n~~l~i~Gd~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~ 76 (184)
T PF05193_consen 1 NITLEDLRAFYKKFYRPSNMTLVIVGDIDPDELEKLIEKYFGSLPKSSIPPKPKPRSPPLPPSEPQGKEIV--IPSK--D 76 (184)
T ss_dssp C--HHHHHHHHHHHSSGGGEEEEEEESSGHHHHHHHHHHHHTTSSHSCHGGSSSCSSSSSSCGGSSEEEEE--EEES--S
T ss_pred CCCHHHHHHHHHHhcCccceEEEEEcCccHHHHHHHHHhhhhhhccccccccccccccccccccccccccc--cccc--c
Confidence 4799999999999999999999999999999999999999988875421 00000000001111111222 2222 2
Q ss_pred CCCeEEEEEEecccccC-cchHHHHHHHHHHHHHhchhhHHHHHhhcccceEEEeeeeeeCceeeEEEEEEcCCCChhhH
Q 006560 426 ETNSVIELYFQIEQEKG-MELTRLKALIDLFDEILEEPFFNQLRTKEQLGYVVECSPRVTYRVFGFCFCIQSSKYNPIYL 504 (640)
Q Consensus 426 ~~~~~v~~~~~~~~~~~-~~~~~~~~~~~ll~~~l~s~lf~~LR~k~~LgY~v~s~~~~~~~~~~~~~~vqs~~~~~~~~ 504 (640)
..++.+.++|+++...+ .......++..+|+..++++||.+||++++++|+|+++.....+...+.+.++. +++.+
T Consensus 77 ~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~s~l~~~lr~~~~l~y~v~~~~~~~~~~~~~~i~~~~---~~~~~ 153 (184)
T PF05193_consen 77 ESQSIVSIAFPGPPIKDSKDYFALNLLSSLLGNGMSSRLFQELREKQGLAYSVSASNSSYRDSGLFSISFQV---TPENL 153 (184)
T ss_dssp SSSEEEEEEEEEEETGTSTTHHHHHHHHHHHHCSTTSHHHHHHHTTTTSESEEEEEEEEESSEEEEEEEEEE---EGGGH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhcCccchhHHHHHhccccceEEEeeeeccccceEEEEEEEc---CcccH
Confidence 25677777787332101 122334555556666667789999999999999999997766655555556654 44577
Q ss_pred HHHHHHHHHHHHHHh-cCCCHHHHHHHHHHH
Q 006560 505 QERIDNFISGLDELL-EGLDDESFENYRSGL 534 (640)
Q Consensus 505 ~~~i~~fl~~~~~~l-~~~se~ef~~~k~~l 534 (640)
.+.++.+++.+.+.. .+++++||+++|++|
T Consensus 154 ~~~~~~~~~~l~~l~~~~~s~~el~~~k~~L 184 (184)
T PF05193_consen 154 DEAIEAILQELKRLREGGISEEELERAKNQL 184 (184)
T ss_dssp HHHHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 777777777777666 579999999999875
No 11
>PTZ00432 falcilysin; Provisional
Probab=99.73 E-value=9.9e-15 Score=169.47 Aligned_cols=570 Identities=13% Similarity=0.061 Sum_probs=312.4
Q ss_pred CCCcceEEEEEEE---cchhh--hhcHHHHHHHHHHHHHHHHhCCCchHHHHHHHHhhhcccccCCCCC-----hHHHHH
Q 006560 3 RSSIAYIFVMSIH---LTDSG--LEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQP-----QDDYAA 72 (640)
Q Consensus 3 ~~~~~~~f~i~i~---Lt~~G--~~~~~~ii~~~~~~i~~l~~~~~~~~~~~e~~~~~~~~f~~~~~~~-----~~~~~~ 72 (640)
.....+.|.|.+. +++.| -++.+++.+.++++|+.+++.|+++++++..++. +.|.+++... ...++.
T Consensus 439 ~~~~~~~f~I~l~g~~~~~~~~~~~~~~ev~~~I~~~L~~l~~eGi~~eele~a~~q--lef~~rE~~~~~~p~gl~~~~ 516 (1119)
T PTZ00432 439 DYFKQSIFSIGLKGIKETNEKRKDKVHYTFEKVVLNALTKVVTEGFNKSAVEASLNN--IEFVMKELNLGTYPKGLMLIF 516 (1119)
T ss_pred CCCCceEEEEEEEcCChHhccchhhhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH--HHHHhhhccCCCCCcHHHHHH
Confidence 3455677888874 33333 2468899999999999999999999999955554 4555555432 467888
Q ss_pred HHHHhCCC-CCccceeeccccCccC------CHHHHHHHH-hccCcCce-EEEEEeCCC----CCC-CcCcccccccccc
Q 006560 73 ELAGNLLI-YPAEHVIYGEYMYEVW------DEEMIKHLL-GFFMPENM-RIDVVSKSF----AKS-QDFHYEPWFGSRY 138 (640)
Q Consensus 73 ~la~~l~~-~~~~~vl~~~~~~~~~------d~~~i~~~l-~~l~p~n~-~i~~~~~~~----~~~-~~~~~~~~~~~~Y 138 (640)
.++..+++ .+|.++|..+..++.+ ++.-++.++ ++|-..+- .++++.|+. .+. ....+++. +=
T Consensus 517 ~~~~~~~~g~dp~~~l~~~~~l~~lr~~~~~~~~y~e~Li~k~ll~N~h~~~v~~~p~~s~~~~~~~~~~e~~~L---~~ 593 (1119)
T PTZ00432 517 LMQSRLQYGKDPFEILRFEKLLNELKLRIDNESKYLEKLIEKHLLNNNHRVTVHLEAVESSKYEKEFNKLVKDEL---KE 593 (1119)
T ss_pred HHHHHHhcCCCHHHHHhhHHHHHHHHHHHhcccHHHHHHHHHHccCCCeeeEEEEecCCcccHHHHHHHHHHHHH---HH
Confidence 99988875 7888887765444332 335678888 46643333 333344432 100 00000000 00
Q ss_pred eeecCChH----------HHHHhcCCCCCCCC-C-CCCCC--------CCccCCCccccccccCCCCCCCCCCeEeecCC
Q 006560 139 TEEDISPS----------LMELWRNPPEIDVS-L-QLPSQ--------NEFIPTDFSIRANDISNDLVTVTSPTCIIDEP 198 (640)
Q Consensus 139 ~~~~i~~~----------~~~~~~~~~~~~~~-~-~lP~~--------N~~ip~~~~l~~~~~~~~~~~~~~P~~~~~~~ 198 (640)
....++++ .++.|... ...++ + .||.. .+++|....-.... ........-...+
T Consensus 594 ~~~~Ls~ee~~~i~~~~~~l~~~q~~-~~~~e~l~~lP~l~~~DI~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 667 (1119)
T PTZ00432 594 RLSHLTKEQVDEMEKAYEKFKKEREA-DDDPEHLDSFPILSLSDLNKETEEIPTKLYKLSSD-----SLKENMDLDSDGG 667 (1119)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHhcC-CCChhHHhhcCCCcHHHcCCcccCCcchhhhcccc-----cccccccccccCC
Confidence 01122222 22334331 11110 1 12221 11222211000000 0000000012345
Q ss_pred ceEEEeeccCcccCcceEEEEEEecCCCCCCHHHHHHHHHHHHHHHH-HHhhhhhc-------ccccccEEEEEEec---
Q 006560 199 LIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKD-ELNEIIYQ-------ASVAKLETSVSIFS--- 267 (640)
Q Consensus 199 g~~v~~~~d~~f~~P~~~i~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~l~~~~~~-------a~~ag~~~~~~~~~--- 267 (640)
++.+++.+-.+ .-.+++.+.|..... +........|++.++.. +.....|. ....|+++++....
T Consensus 668 ~~~~~~~~~~T--nGi~y~~~~fdl~~l--~~e~~~yl~L~~~~l~~~gT~~~s~~el~~~i~~~tGg~~~~~~~~~~~~ 743 (1119)
T PTZ00432 668 SVTVLVHPIES--RGILYLDFAFSLDSL--TVDELKYLNLFKALLKENGTDKLSSEEFTYKREKNLGGLSASTAFYSETN 743 (1119)
T ss_pred CcceEEEecCC--CCeEEEEEEecCCCC--CHHHHhhHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCeEEEEEEecccc
Confidence 77777764332 225677777766543 34566777888888864 21222222 23447766554322
Q ss_pred -----------ceeEEEEeecCCCHHHHHHHHHHHhccCCCCHHH-HHHHHHHHHHHHhcccc-CccchHHHHHHHhccC
Q 006560 268 -----------DKLELKVYGFNDKLPVLLSKILAIAKSFLPSDDR-FKVIKEDVVRTLKNTNM-KPLSHSSYLRLQVLCQ 334 (640)
Q Consensus 268 -----------~g~~i~~~g~s~~l~~~l~~~~~~l~~~~~~~~~-f~~~k~~~~~~l~~~~~-~p~~~a~~~~~~~l~~ 334 (640)
..+.+++.+..++++.+++++.+.|.+..|++.. +..+.++.+..+.+... +....|...+..-+..
T Consensus 744 ~~~~~~~~~~~~~~~v~~k~l~~~~~~~~~l~~eil~~~~f~d~~rl~~il~~~~~~~~~~~~~~Gh~~A~~~~~s~~S~ 823 (1119)
T PTZ00432 744 NLTYDDPYNGVGYLNVRAKVLKHKVNEMVDIVLEALKDADFSNSKKGVEILKRKINGMKTVFSSKGHKFALKRMKSKFSV 823 (1119)
T ss_pred ccccCcccccceEEEEEEEEhhhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCH
Confidence 2588888889999999999999999999998654 66666666666666554 4444444333322211
Q ss_pred C-----CC---CHHHHHhhh---------ccCCHHHHHHHHHHHHhcceeEEEEeccCCH-HHHHHHHHHHHhhcCCC--
Q 006560 335 S-----FY---DVDEKLSIL---------HGLSLADLMAFIPELRSQLYIEGLCHGNLSQ-EEAIHISNIFKSIFSVQ-- 394 (640)
Q Consensus 335 ~-----~~---~~~~~~~~l---------~~it~ed~~~~~~~~~~~~~~~~~v~Gni~~-~~~~~l~~~~~~~l~~~-- 394 (640)
. .+ +....+..+ +.+ .+.+...++++++..++.+.++|+.+. +.+.+.+..+.+.++..
T Consensus 824 ~~~~~e~~~G~~~~~fl~~l~~~~~e~~~~~v-~~~L~~i~~~i~~~~~l~~~vt~~~~~~~~~~~~~~~~~~~l~~~~~ 902 (1119)
T PTZ00432 824 SDYADELVNGYSQLLFLKETLVPLAEKDWSKV-ESKLNEIRNKLLSMKNLTVNVTGDSELLDSLLDDSTTFLKKLSSTFK 902 (1119)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHhCcCCcEEEEEeCHHHHHHHHHHHHHHHHhcccccc
Confidence 1 11 111112221 111 344667777788889999999999743 34444445566555321
Q ss_pred --C--CCccccccceEEE---cCC-CCeEEEEeecCCCCCCCeEEEEEEecccccCcchHHHHHHHHHHHHHh-chhhHH
Q 006560 395 --P--LPIEMRHQECVIC---LPS-GANLVRNVSVKNKCETNSVIELYFQIEQEKGMELTRLKALIDLFDEIL-EEPFFN 465 (640)
Q Consensus 395 --~--~~~~~~~~~~~~~---l~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ll~~~l-~s~lf~ 465 (640)
+ .....+.. .... .+. .....+.++ ...| .+..... .-....+....+.++..+| .+.|++
T Consensus 903 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~e~~~~p----~~V~-yv~~~~~----~~~~~~~~~~~l~Vl~~~L~~~yLw~ 972 (1119)
T PTZ00432 903 ENDNKSSDKVWVK-EVLDKKLMESVDKNEFIVLP----TRVN-FVGMGGK----LFDKSDKVDGSFQVIVHYLKNSYLWK 972 (1119)
T ss_pred ccccccccccccc-ccccccccCCcccceEEEcc----Ccee-EEEEecc----cccCCCccCHHHHHHHHHHccccchH
Confidence 1 11000000 0000 010 011111111 1111 1111100 0001122345566677776 578999
Q ss_pred HHHhhcccceEEEeeeeeeCceeeEEEEEEcCCCChhhHHHHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHhcCCC
Q 006560 466 QLRTKEQLGYVVECSPRVTYRVFGFCFCIQSSKYNPIYLQERIDNFISGLDELLE---GLDDESFENYRSGLMAKLLEKD 542 (640)
Q Consensus 466 ~LR~k~~LgY~v~s~~~~~~~~~~~~~~vqs~~~~~~~~~~~i~~fl~~~~~~l~---~~se~ef~~~k~~l~~~~~~~~ 542 (640)
++|+ +|++|++++.... .| .+.|+.. .|| .+.+.++.|.+...-..+ .+|++++++++-+.++.+-. +
T Consensus 973 ~IR~-~GGAYG~~~~~~~-~G--~~~f~SY---RDP-n~~~Tl~~f~~~~~~l~~~~~~~~~~~l~~~iig~~~~~D~-p 1043 (1119)
T PTZ00432 973 TVRM-SLGAYGVFADLLY-TG--HVIFMSY---ADP-NFEKTLEVYKEVASALREAAETLTDKDLLRYKIGKISNIDK-P 1043 (1119)
T ss_pred HHcc-cCCccccCCccCC-CC--eEEEEEe---cCC-CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCC-C
Confidence 9998 6889999976543 23 3334333 244 345567776665443333 49999999999999988766 5
Q ss_pred CChhHHHHHHHHHHhccccccccchHhHHHHhcCCHHHHHHHHHHHcccCCCCcceEEEEEecCCCCccc
Q 006560 543 PSLTYESNRFWNQITDKRYMFDQSQKEAEDLKSIKKNDVISWYKTYLQQWSPKCRRLAVRVWGCNTNIKE 612 (640)
Q Consensus 543 ~sl~~~~~~~w~~i~~~~~~f~~~~~~~~~l~~vT~~dv~~~~~~~l~~~~~~~~~l~i~v~g~~~~~~~ 612 (640)
.+...++...+..++.| ...+.++++.+.|-++|++||+++++.+.... ..-.+.|+|...++.+
T Consensus 1044 ~~p~~~g~~~~~~~l~g-~t~e~rq~~R~~il~~t~edi~~~a~~~~~~~----~~~~~~v~g~~~~~~~ 1108 (1119)
T PTZ00432 1044 LHVDELSKLALLRIIRN-ESDEDRQKFRKDILETTKEDFYRLADLMEKSK----EWEKVIAVVNSKTSDT 1108 (1119)
T ss_pred CChHHHHHHHHHHHHcC-CCHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh----ccCeEEEEECHHHhhh
Confidence 56666777666666654 45577788889999999999999999998742 2355777777665543
No 12
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only]
Probab=99.41 E-value=1.3e-10 Score=126.90 Aligned_cols=381 Identities=15% Similarity=0.068 Sum_probs=231.9
Q ss_pred CceEEEeeccCcccCcceEEEEEEecCCCCCCHHHHHHHHHHHH-----------------HHHHHHhhhhhcccccccE
Q 006560 198 PLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIH-----------------LLKDELNEIIYQASVAKLE 260 (640)
Q Consensus 198 ~g~~v~~~~d~~f~~P~~~i~~~~~~~~~~~~~~~~~~~~l~~~-----------------~l~~~l~~~~~~a~~ag~~ 260 (640)
.|.++.+..+. -|...++|.|.++....+ |.++++.. |++.+++.. .-.+.+-+
T Consensus 29 TGa~l~hi~~~---d~~~vFsi~F~T~p~dst----GVaHiLEHtvlcGS~kYPvkdPF~~ml~rSLntF--~NA~T~~D 99 (978)
T COG1026 29 TGAELAHIKNE---DPNNVFSIAFKTEPHDST----GVAHILEHTVLCGSKKYPVKDPFFKMLKRSLNTF--LNAFTFPD 99 (978)
T ss_pred CCceEEEecCC---CcCceEEEEeecCCCCCC----CcchHHHHHhhhCCCCCCCCChHHHHHHHhHHHH--HhhccCCC
Confidence 69999988766 467889999998764432 33444443 333444321 11122333
Q ss_pred EEEEEecceeEEEEeecCCCHHHHHHHHHHHhccCCCCHHHHHHHH--------------HHHHHHHhccccCccchHHH
Q 006560 261 TSVSIFSDKLELKVYGFNDKLPVLLSKILAIAKSFLPSDDRFKVIK--------------EDVVRTLKNTNMKPLSHSSY 326 (640)
Q Consensus 261 ~~~~~~~~g~~i~~~g~s~~l~~~l~~~~~~l~~~~~~~~~f~~~k--------------~~~~~~l~~~~~~p~~~a~~ 326 (640)
+.+++. .+.-.+.+-.++...+|.+.+|-++++.|.++- -.+..+-++...+|.....+
T Consensus 100 ~T~YP~-------sS~~~~Df~NLl~VYlDavf~PlL~~e~F~QEgwr~e~~~~~~l~~~GVVyNEMKGa~ss~~~~~~~ 172 (978)
T COG1026 100 KTVYPA-------SSANEKDFYNLLSVYLDAVFHPLLTKESFLQEGWRIEFKDESNLKYKGVVYNEMKGAYSSGESVLSR 172 (978)
T ss_pred cceeec-------cccCcchHHHHHHHHHHhhhCcccchHHHhhhhhccccCCCccceeeeEEeehhcccccCchhHHHH
Confidence 444432 111223477899999999999999999887653 23344555666688889999
Q ss_pred HHHHhccCCC---CCHHHHHhhhccCCHHHHHHHHHHHHhcceeEEEEeccCCHHHHHHHHHHH-HhhcCCCCCCccccc
Q 006560 327 LRLQVLCQSF---YDVDEKLSILHGLSLADLMAFIPELRSQLYIEGLCHGNLSQEEAIHISNIF-KSIFSVQPLPIEMRH 402 (640)
Q Consensus 327 ~~~~~l~~~~---~~~~~~~~~l~~it~ed~~~~~~~~~~~~~~~~~v~Gni~~~~~~~l~~~~-~~~l~~~~~~~~~~~ 402 (640)
.+...+|+.. +...|....|-.+|+|++++||+++|.+.|+.++++||++.++..+.++.. +..++... ....+|
T Consensus 173 ~~~~slfp~~ty~~~SGG~P~~I~~LtyE~~r~FHkk~Y~pSN~~i~~yGni~~~~~L~~iee~~l~~~~k~~-~~~~i~ 251 (978)
T COG1026 173 AMQQSLFPGTTYGVNSGGDPKNIPDLTYEEFRAFHKKHYHPSNCKIFVYGNIPTERLLDFIEEKVLRPFGKRE-LDVPIP 251 (978)
T ss_pred HHHHhhCCCccccccCCCCcccccccCHHHHHHHHHHhCCccceEEEEECCCCHHHHHHHHHHhhhccccccc-cCCCCC
Confidence 9999999742 344577899999999999999999999999999999999999999888664 43333322 111122
Q ss_pred cceEEEcCCCCeEEEEeec--CCCCCCCeEEEEEEecccccCc-chHHHHHHHHHHHHHh----chhhHHHHHhhcccc-
Q 006560 403 QECVICLPSGANLVRNVSV--KNKCETNSVIELYFQIEQEKGM-ELTRLKALIDLFDEIL----EEPFFNQLRTKEQLG- 474 (640)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~ll~~~l----~s~lf~~LR~k~~Lg- 474 (640)
.... .+.........+. ...+..+..+.+.|- .+. .+..+..+..+|..++ .++|.+.|-+ -++|
T Consensus 252 ~~~~--~~~~~~~~~~ypi~~~~~de~q~~~~lsWl----~~~~~d~~~~lal~vL~~iLl~~~asPl~~~lie-sglg~ 324 (978)
T COG1026 252 DQKA--FKKPRRKVLEYPISFDEEDEDQGLLSLSWL----GGSASDAEDSLALEVLEEILLDSAASPLTQALIE-SGLGF 324 (978)
T ss_pred cccc--cCcccccceeeccCCCCCCCceeEEEEEEe----cCCcccHHHHHHHHHHHHHHccCcccHHHHHHHH-cCCCc
Confidence 1111 2221111111222 222345566666676 665 4455666777777766 6799999986 6899
Q ss_pred eEEEeeeeeeCceeeEEEEEEcCCCChhhHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhcCCCCChhHH--HHH
Q 006560 475 YVVECSPRVTYRVFGFCFCIQSSKYNPIYLQERIDNFISGLDELL-EGLDDESFENYRSGLMAKLLEKDPSLTYE--SNR 551 (640)
Q Consensus 475 Y~v~s~~~~~~~~~~~~~~vqs~~~~~~~~~~~i~~fl~~~~~~l-~~~se~ef~~~k~~l~~~~~~~~~sl~~~--~~~ 551 (640)
+.+...+........+.+.+++ .+.+.++..-+-++..+++.. ++++.+.++.++.++.-++++......+. +.+
T Consensus 325 ~~~~g~~~~~~~~~~f~v~~~g--v~~ek~~~~k~lV~~~L~~l~~~gi~~~~ie~~~~q~E~s~ke~~s~pfgl~l~~~ 402 (978)
T COG1026 325 ADVSGSYDSDLKETIFSVGLKG--VSEEKIAKLKNLVLSTLKELVKNGIDKKLIEAILHQLEFSLKEVKSYPFGLGLMFR 402 (978)
T ss_pred ccccceeccccceeEEEEEecC--CCHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhhhcCCCccHHHHHH
Confidence 4444334444344445555554 244444433333333344333 78999999999999888887743222211 112
Q ss_pred HHHHHhcccccccc--chHhHHHHhc-CCHHH-HHHHHHHHcccCCCCcceEEEEEecCC
Q 006560 552 FWNQITDKRYMFDQ--SQKEAEDLKS-IKKND-VISWYKTYLQQWSPKCRRLAVRVWGCN 607 (640)
Q Consensus 552 ~w~~i~~~~~~f~~--~~~~~~~l~~-vT~~d-v~~~~~~~l~~~~~~~~~l~i~v~g~~ 607 (640)
....++.|.-.++. ...+++.|++ +.... +.+.+++||-.+ ...+.|.+.++.
T Consensus 403 ~~~gw~~G~dp~~~Lr~~~~~~~Lr~~le~~~~fe~LI~ky~l~N---~h~~~v~~~Ps~ 459 (978)
T COG1026 403 SLYGWLNGGDPEDSLRFLDYLQNLREKLEKGPYFEKLIRKYFLDN---PHYVTVIVLPSP 459 (978)
T ss_pred hccccccCCChhhhhhhHHHHHHHHHhhhcChHHHHHHHHHhhcC---CccEEEEEecCh
Confidence 22223333333343 2345555554 55555 899999999752 335666666664
No 13
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only]
Probab=99.38 E-value=5.8e-10 Score=121.81 Aligned_cols=545 Identities=15% Similarity=0.084 Sum_probs=281.5
Q ss_pred EEEEcchhhhhcHHHHHHHHHHHHHHHHhCCCchHHHHHHHHhhhcccccCCCCChHHHH--HHHHH-hCCCCCccceee
Q 006560 12 MSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYA--AELAG-NLLIYPAEHVIY 88 (640)
Q Consensus 12 i~i~Lt~~G~~~~~~ii~~~~~~i~~l~~~~~~~~~~~e~~~~~~~~f~~~~~~~~~~~~--~~la~-~l~~~~~~~vl~ 88 (640)
++|.++.--.+.+++.-+.||+.++.+.+.|+.+.+.+-+....+....-. ...|...+ ..+.. .++.-.|.+-|+
T Consensus 340 f~v~~~gv~~ek~~~~k~lV~~~L~~l~~~gi~~~~ie~~~~q~E~s~ke~-~s~pfgl~l~~~~~~gw~~G~dp~~~Lr 418 (978)
T COG1026 340 FSVGLKGVSEEKIAKLKNLVLSTLKELVKNGIDKKLIEAILHQLEFSLKEV-KSYPFGLGLMFRSLYGWLNGGDPEDSLR 418 (978)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhhh-cCCCccHHHHHHhccccccCCChhhhhh
Confidence 344444433457889999999999999999999988887776665544321 23333322 22211 222244444443
Q ss_pred ccccC---ccCCHH--HHHHHH-hccCcCc-eEEEEEeCCCC---CCCcCcccccccccceeecCChHHHHHhcCCC---
Q 006560 89 GEYMY---EVWDEE--MIKHLL-GFFMPEN-MRIDVVSKSFA---KSQDFHYEPWFGSRYTEEDISPSLMELWRNPP--- 155 (640)
Q Consensus 89 ~~~~~---~~~d~~--~i~~~l-~~l~p~n-~~i~~~~~~~~---~~~~~~~~~~~~~~Y~~~~i~~~~~~~~~~~~--- 155 (640)
-.... .++-.. -.++++ +++--.| ..++++-|+.. +.+....+..- =..+.++++.+++.....
T Consensus 419 ~~~~~~~Lr~~le~~~~fe~LI~ky~l~N~h~~~v~~~Ps~~~~~~~ekee~e~L~---~~~~~l~de~~~ki~~~~~~l 495 (978)
T COG1026 419 FLDYLQNLREKLEKGPYFEKLIRKYFLDNPHYVTVIVLPSPELEEKLEKEERELLQ---KRSSELTDEDLEKIIKDSKKL 495 (978)
T ss_pred hHHHHHHHHHhhhcChHHHHHHHHHhhcCCccEEEEEecChHHHHHHHHHHHHHHH---HHHhhcCHHHHHHHHHHHHHH
Confidence 31111 111112 367777 4664344 44444445541 10000011110 011223333332221100
Q ss_pred CCCCCCCCCCC-CCccCCCccccccccCCCCCCCCCCeEeecCCceEEEeeccCcccCcceEEEEEEecCCCCCCHHHHH
Q 006560 156 EIDVSLQLPSQ-NEFIPTDFSIRANDISNDLVTVTSPTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCI 234 (640)
Q Consensus 156 ~~~~~~~lP~~-N~~ip~~~~l~~~~~~~~~~~~~~P~~~~~~~g~~v~~~~d~~f~~P~~~i~~~~~~~~~~~~~~~~~ 234 (640)
.....-..|+. +..+|+ +++-+.. + .....+.....++...+.+.+-.+ .-.+++.+.|..+.. +.....
T Consensus 496 ke~Q~~~dse~~~~~lP~-l~~~dvp---~-~~~k~~l~~~~~~~~~v~~~~~~t--n~i~yl~~~~~~~~l--~~~llp 566 (978)
T COG1026 496 KERQDQPDSEEDLATLPT-LKLGDVP---D-PIEKTSLETEVSNEAKVLHHDLFT--NGITYLRLYFDLDML--PSELLP 566 (978)
T ss_pred HHhhcCCCchhhhhhccc-cchhcCC---C-cccccceeeeccCCcceEEeecCC--CCeEEEEEEeecCCC--Chhhhh
Confidence 00001111221 122332 1121111 0 112223344455666665543121 224677777777543 334456
Q ss_pred HHHHHHHHHHHHH-hhhhhc-------ccccccEEEEEEec---------ceeEEEEeecCCCHHHHHHHHHHHhccCCC
Q 006560 235 LTELFIHLLKDEL-NEIIYQ-------ASVAKLETSVSIFS---------DKLELKVYGFNDKLPVLLSKILAIAKSFLP 297 (640)
Q Consensus 235 ~~~l~~~~l~~~l-~~~~~~-------a~~ag~~~~~~~~~---------~g~~i~~~g~s~~l~~~l~~~~~~l~~~~~ 297 (640)
...|++.++...- ....|. ....|++++.+... ..+.+++...+++...+++.+-+.+.+..|
T Consensus 567 yL~L~~~~l~~lgt~~~~y~e~~~~i~~~TGgis~~~~~~~~~~~~~~~~~~~~i~~K~l~~k~~~~~~~i~~~l~~~~F 646 (978)
T COG1026 567 YLPLFAFALTNLGTETYSYKELLNQIERHTGGISVSLSVDTDPGDDGEYRPSFSISGKALRSKVEKLFELIREILANTDF 646 (978)
T ss_pred hHHHHHHHHHhcCCCCcCHHHHHHHHHHHhCCceeeEeeccCCCccccccceEEEEEEehhhhhhHHHHHHHHHHhcCCc
Confidence 6777777765421 111111 12346666555432 357777777889999999999999999999
Q ss_pred -CHHHHHHHHHHHHHHHhccccC-ccchHHHHHHHhccCCC--------CCHHHHHhhhcc-----CC---HHHHHHHHH
Q 006560 298 -SDDRFKVIKEDVVRTLKNTNMK-PLSHSSYLRLQVLCQSF--------YDVDEKLSILHG-----LS---LADLMAFIP 359 (640)
Q Consensus 298 -~~~~f~~~k~~~~~~l~~~~~~-p~~~a~~~~~~~l~~~~--------~~~~~~~~~l~~-----it---~ed~~~~~~ 359 (640)
|.+++..+.++.+..+.+...+ +...|......-++... -+....+..|.+ .. .+-+.+.++
T Consensus 647 ~D~~Rlkell~q~~~~l~~~vr~sG~~~A~~~~~s~~~~~~~l~e~~~Gl~q~k~i~~l~~~~~~~~~~ei~~kL~~l~~ 726 (978)
T COG1026 647 HDRERLKELLEQYLSDLTSSVRNSGHSIASSLANSRLSSAGALKELLNGLSQVKFLRELSSNFEENFEKEIADKLQALRK 726 (978)
T ss_pred CcHHHHHHHHHHHHhhhHHhhhccchHHHHHHhhcccccchhHHHHhcChhHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 7777777777777777766543 55555444443333211 111122222211 11 245667777
Q ss_pred HHHhcceeEEEEeccCCHHHHHHHH-HHHHhhcCCCCCCccccc---cceEEEcCC-C-CeEEEEeecCCCCCCCeEEEE
Q 006560 360 ELRSQLYIEGLCHGNLSQEEAIHIS-NIFKSIFSVQPLPIEMRH---QECVICLPS-G-ANLVRNVSVKNKCETNSVIEL 433 (640)
Q Consensus 360 ~~~~~~~~~~~v~Gni~~~~~~~l~-~~~~~~l~~~~~~~~~~~---~~~~~~l~~-~-~~~~~~~~~~~~~~~~~~v~~ 433 (640)
+++...++.+++.|+++.. .+.+ +.+.+.+.... +....+ ......+.. . ..++ ++. |.+-+..
T Consensus 727 ~i~~~~n~~i~i~~~~~~~--~~~~e~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i--i~~--p~a~~~l--- 796 (978)
T COG1026 727 KIFQTNNLRIAIIGDIDKI--LDLLENPLLKFLEHLL-PGFELPTPPKNPHLDLISSLSEATI--IPS--PVAYNAL--- 796 (978)
T ss_pred HHhhcCceEEEEecChhhh--HHHHHHHhhhhhcccC-cccccCCCCCCcchhhhccccceEE--ecc--HHHHHHH---
Confidence 8888888889999997643 2223 33444332100 000000 000011111 1 1111 221 1112221
Q ss_pred EEecccccCcchHHHHHHHHHHHHHhc-hhhHHHHHhhcccceEEEeeeeeeCceeeEEEEEEcCCCChhhHHHHHHHHH
Q 006560 434 YFQIEQEKGMELTRLKALIDLFDEILE-EPFFNQLRTKEQLGYVVECSPRVTYRVFGFCFCIQSSKYNPIYLQERIDNFI 512 (640)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~ll~~~l~-s~lf~~LR~k~~LgY~v~s~~~~~~~~~~~~~~vqs~~~~~~~~~~~i~~fl 512 (640)
.+.+ ..-+...++.+.+.+++.+++ .+|..++|+ +|++|+.++......|..++ +.. .+|+ +....+.|.
T Consensus 797 ~fs~--~~~~y~hpd~~~l~vls~~L~~~~lw~~IR~-~GGAYGa~as~~~~~G~f~f--~sY---RDPn-~~kt~~v~~ 867 (978)
T COG1026 797 AFSI--GGLPYTHPDYAALQVLSEYLGSGYLWNKIRE-KGGAYGASASIDANRGVFSF--ASY---RDPN-ILKTYKVFR 867 (978)
T ss_pred hhhc--cCCCCCCccchHHHHHHHHhccchhHHHHHh-hccccccccccccCCCeEEE--Eec---CCCc-HHHHHHHHH
Confidence 1221 011234456777788888775 689999998 68999999987665555433 322 2443 334555565
Q ss_pred HHHHHHh-cCCCHHHHHHHHHHHHHHhcCCCCChhHHHH-HHHHHHhccccccccchHhHHHHhcCCHHHHHHHHHHHcc
Q 006560 513 SGLDELL-EGLDDESFENYRSGLMAKLLEKDPSLTYESN-RFWNQITDKRYMFDQSQKEAEDLKSIKKNDVISWYKTYLQ 590 (640)
Q Consensus 513 ~~~~~~l-~~~se~ef~~~k~~l~~~~~~~~~sl~~~~~-~~w~~i~~~~~~f~~~~~~~~~l~~vT~~dv~~~~~~~l~ 590 (640)
+.+.... ..+++.+++.++-+.++.+..... ...++. .+.... .| ..-+.++.+.++|..+|++||.+..++|+.
T Consensus 868 ~~v~~l~s~~~~~~d~~~~ilg~i~~~d~p~s-p~~~~~~s~~~~~-sg-~~~~~~qa~re~~l~vt~~di~~~~~~yl~ 944 (978)
T COG1026 868 KSVKDLASGNFDERDLEEAILGIISTLDTPES-PASEGSKSFYRDL-SG-LTDEERQAFRERLLDVTKEDIKEVMDKYLL 944 (978)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHhhcccccccC-CcceehhhHHHHH-hc-CCHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 5555444 489999999999999988766432 222222 222222 22 222556778899999999999999999998
Q ss_pred c
Q 006560 591 Q 591 (640)
Q Consensus 591 ~ 591 (640)
+
T Consensus 945 ~ 945 (978)
T COG1026 945 N 945 (978)
T ss_pred c
Confidence 5
No 14
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF. In a subset of species that make coenzyme PQQ (pyrrolo-quinoline-quinone), this probable peptidase is found in the PQQ biosynthesis region and is thought to act as a protease on PqqA (TIGR02107), a probable peptide precursor of the coenzyme. PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=99.33 E-value=1.8e-09 Score=118.34 Aligned_cols=225 Identities=20% Similarity=0.214 Sum_probs=139.9
Q ss_pred HHHHHHHHHhhhhhcccccccEEEEEEecceeEEEEeecCCCHHHHHHHHHHHhccCCCC--HHHHHHHHHHHHHHHhcc
Q 006560 239 FIHLLKDELNEIIYQASVAKLETSVSIFSDKLELKVYGFNDKLPVLLSKILAIAKSFLPS--DDRFKVIKEDVVRTLKNT 316 (640)
Q Consensus 239 ~~~~l~~~l~~~~~~a~~ag~~~~~~~~~~g~~i~~~g~s~~l~~~l~~~~~~l~~~~~~--~~~f~~~k~~~~~~l~~~ 316 (640)
+..++...+....-++..||.+.+++...+...+.+.|..+-++.++..++..|..|... ... . |
T Consensus 469 ~~~~l~~~l~~l~~~~~~~g~~~~~~~~~~~w~l~l~g~~~~~~~~~~~~~~~l~~~~~~~~~~~-~-----------~- 535 (696)
T TIGR02110 469 LALALQRQLRPLLADARHAGVNGSWQATGASWQLLLNGPRSPMRAVFSVALALLALAAPMLAQPA-A-----------N- 535 (696)
T ss_pred HHHHHHHHHHHHHHHHHhcCceeEEEEcCCeEEEEcCCCchhHHHHHHHHHHHHhCCCccccccc-c-----------c-
Confidence 344555666666667778899999999999999999999999999999998888876321 100 0 0
Q ss_pred ccCccchHHHHHHHhccCCCCCHHHHHhhhccCCHHHHHHHHHHHHhcceeEEEEeccCCHHHHHHHHHHHHhhcCCCCC
Q 006560 317 NMKPLSHSSYLRLQVLCQSFYDVDEKLSILHGLSLADLMAFIPELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSVQPL 396 (640)
Q Consensus 317 ~~~p~~~a~~~~~~~l~~~~~~~~~~~~~l~~it~ed~~~~~~~~~~~~~~~~~v~Gni~~~~~~~l~~~~~~~l~~~~~ 396 (640)
...|...+.+.+.+.+-.-- ....... .+. |....+. .+ + ..+ +......++..+.
T Consensus 536 ~~~~~~i~ir~ll~~lp~~~------~~~~~~~--~~~--~~~~~~~-----~~-----~-~~~---~~~~l~~~~~~~~ 591 (696)
T TIGR02110 536 RASAPSIPIRQLLAALPERL------LKSLPAQ--QDD--WLAARWG-----AA-----T-QLA---QRVALQLSPGTAD 591 (696)
T ss_pred CCCCccchHHHHHHhchHhh------ccCcccc--ccc--hhhhhcc-----cc-----h-hHH---HHHHHHhCCCCCc
Confidence 01122223333222211000 0000000 000 1111111 11 1 222 2222333332110
Q ss_pred CccccccceEEEcCCCCeEEEEeecCCCCCCCeEEEEEEecccccCcchHHHHHHHHHHHHHhchhhHHHHHhhcccceE
Q 006560 397 PIEMRHQECVICLPSGANLVRNVSVKNKCETNSVIELYFQIEQEKGMELTRLKALIDLFDEILEEPFFNQLRTKEQLGYV 476 (640)
Q Consensus 397 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ll~~~l~s~lf~~LR~k~~LgY~ 476 (640)
.. .+.+... . .++.. ..+... ...++++++++ .+..+..+.++..||.+++..+||+.||-++||||.
T Consensus 592 ~~--~~~~~~~-~-~~~~~-~~~~~~---~~e~alllf~p----~~~~~~~~~aa~rlla~l~~~~f~qrlRve~qlGY~ 659 (696)
T TIGR02110 592 LA--RPTPLPA-R-LGRGW-VPLACD---GGEQALLLFCP----LPTADVASEAAWRLLAQLLEPPFFQRLRVELQLGYV 659 (696)
T ss_pred cC--CCCCCCc-c-cccce-EeccCC---CCCcEEEEEec----CCCCCHHHHHHHHHHHHHhchhHHHHHHHhhccceE
Confidence 00 0100001 1 22221 123332 34677888899 788888999999999999999999999999999999
Q ss_pred EEeeeeeeCceeeEEEEEEcCCCChhhHHHHHHHHH
Q 006560 477 VECSPRVTYRVFGFCFCIQSSKYNPIYLQERIDNFI 512 (640)
Q Consensus 477 v~s~~~~~~~~~~~~~~vqs~~~~~~~~~~~i~~fl 512 (640)
|+|++....+..|+.|.|||+.+++..+..+|+.|+
T Consensus 660 v~~~~~~~~~~~gllf~~QSP~~~~~~l~~h~~~fl 695 (696)
T TIGR02110 660 VFCRYRRVADRDGLLFALQSPDASARELLQHIKRFL 695 (696)
T ss_pred EEEeeEEcCCcceeEEEEeCCCCCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999997
No 15
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=7.5e-08 Score=100.10 Aligned_cols=551 Identities=13% Similarity=0.060 Sum_probs=292.2
Q ss_pred hhcHHHHHHHHHHHHHHHHhCCCchHHHHHHHHhhhcccccCCCCChHHHHHHHHHhCCC-CCccceeeccc--------
Q 006560 21 LEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLLI-YPAEHVIYGEY-------- 91 (640)
Q Consensus 21 ~~~~~~ii~~~~~~i~~l~~~~~~~~~~~e~~~~~~~~f~~~~~~~~~~~~~~la~~l~~-~~~~~vl~~~~-------- 91 (640)
.++++.|-+.|...++.+-..|++...++-+....++..+.++..--......++.+-.+ ..|-+.|....
T Consensus 385 eediekve~lV~~t~~~lae~gfd~drieAil~qiEislk~qst~fGL~L~~~i~~~W~~d~DPfE~Lk~~~~L~~lk~~ 464 (998)
T KOG2019|consen 385 EEDIEKVEELVMNTFNKLAETGFDNDRIEAILHQIEISLKHQSTGFGLSLMQSIISKWINDMDPFEPLKFEEQLKKLKQR 464 (998)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHhhhhhhccccchhHHHHHHHhhhhccCCCccchhhhhhHHHHHHHH
Confidence 358899999999999999999999988988888887777776655444455555554433 44444443321
Q ss_pred cCccCCHHHHHHHHh-ccCcCceEEEEE-e--CCCCCCCcCcccccccccceeecCChHHHHHhcCCC-CCCCCCCCCCC
Q 006560 92 MYEVWDEEMIKHLLG-FFMPENMRIDVV-S--KSFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNPP-EIDVSLQLPSQ 166 (640)
Q Consensus 92 ~~~~~d~~~i~~~l~-~l~p~n~~i~~~-~--~~~~~~~~~~~~~~~~~~Y~~~~i~~~~~~~~~~~~-~~~~~~~lP~~ 166 (640)
+-++ .+...+.+++ ++-...-++++. - |++.+.. ..+.--..+-.+..++++.++...... .....-.-|+.
T Consensus 465 l~ek-~~~lfq~lIkkYilnn~h~~t~smqpd~e~~~~~--~~eE~tkL~ek~~alteeD~~ei~k~~~eL~~kQ~tp~d 541 (998)
T KOG2019|consen 465 LAEK-SKKLFQPLIKKYILNNPHCFTFSMQPDPEFAEKL--EQEEATKLEEKKAALTEEDLAEIAKAGEELREKQSTPED 541 (998)
T ss_pred Hhhh-chhHHHHHHHHHHhcCCceEEEEecCCchhhHHH--HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhhCCccc
Confidence 2222 5667788884 443222233333 2 3332110 011111122223444544444322100 00111223444
Q ss_pred CCccCCCccccccccCCCC-CCCCCCeEeecCCceEEEeeccCcccCcceEEEEEEecCCCCCCHHHHHHHHHHHHHHHH
Q 006560 167 NEFIPTDFSIRANDISNDL-VTVTSPTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKD 245 (640)
Q Consensus 167 N~~ip~~~~l~~~~~~~~~-~~~~~P~~~~~~~g~~v~~~~d~~f~~P~~~i~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 245 (640)
-.|+|+ +.+ ++.+ ...-.|..+.+-+|+++.+.- .|....+++.+.+.-.. -.-......-|+|..+.+
T Consensus 542 lsClPt-L~v-----sDIp~~~~~~~~~v~dingvkv~~~d--l~tngi~Y~r~~~~l~~--~p~eL~PylPlfc~sll~ 611 (998)
T KOG2019|consen 542 LSCLPT-LNV-----SDIPKTIPYTKLEVGDINGVKVQRCD--LFTNGITYTRVVFDLNS--LPEELLPYLPLFCQSLLN 611 (998)
T ss_pred cccccc-ccc-----ccCCCCCCccceeeeeccCceeEEee--ccCCceEEEEEeecccc--CcHHhhcchHHHHHHHHh
Confidence 456663 111 1111 122346777888998875552 12122445555544332 233345566677776643
Q ss_pred -H-----Hhhh--hhcccccccEEEEEEec------ceeEEEEeec--CCCHHHHHHHHHHHhccCCCC-HHHHHHHHHH
Q 006560 246 -E-----LNEI--IYQASVAKLETSVSIFS------DKLELKVYGF--NDKLPVLLSKILAIAKSFLPS-DDRFKVIKED 308 (640)
Q Consensus 246 -~-----l~~~--~~~a~~ag~~~~~~~~~------~g~~i~~~g~--s~~l~~~l~~~~~~l~~~~~~-~~~f~~~k~~ 308 (640)
+ +.+. .....-.|++.+..... ....|-++|+ ..+.+.++++....+.++.|+ ++.|.....+
T Consensus 612 lGt~~lsf~el~qqI~rkTGGiS~~p~~~s~~~~d~p~~~i~~~~~~l~rn~~dlfel~n~il~e~~f~n~dkfkvlvk~ 691 (998)
T KOG2019|consen 612 LGTGDLSFVELEQQIGRKTGGISVSPLVSSDDGMDEPELGIVFSGSMLDRNADDLFELWNKILQETCFTNQDKFKVLVKQ 691 (998)
T ss_pred cCCCcccHHHHHHHhhhhcCceeecceeccCCCCCccceeEEechhhhcCChhHHHHHHHHHhcccCcccHHHHHHHHHH
Confidence 2 2221 11223346666554331 1122445554 457999999999999999876 4678888888
Q ss_pred HHHHHhccccCc-cchHHHHHHHhccCCCCC--------HHHHHhhhccCC-------HHHHHHHHHHHHhcceeEEEEe
Q 006560 309 VVRTLKNTNMKP-LSHSSYLRLQVLCQSFYD--------VDEKLSILHGLS-------LADLMAFIPELRSQLYIEGLCH 372 (640)
Q Consensus 309 ~~~~l~~~~~~p-~~~a~~~~~~~l~~~~~~--------~~~~~~~l~~it-------~ed~~~~~~~~~~~~~~~~~v~ 372 (640)
...++.|...+. ...|.......+.+..|- .-+.+..|++.. .+.+.+..+.+++.+++.+.|.
T Consensus 692 s~s~~~n~i~dsGH~~A~~rs~a~l~~ag~i~EqlgGl~ql~fl~~L~~~~d~d~~~i~~kL~eIrk~ll~~ng~~~~it 771 (998)
T KOG2019|consen 692 SASRMTNGIADSGHGFAAARSAAMLTPAGWISEQLGGLSQLEFLHRLEEKVDNDWEPIVSKLTEIRKSLLNTNGMIVNIT 771 (998)
T ss_pred HHHHhhccCCcccchhHhhhhhcccCcccchHhHhcchHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 888888776532 222222222222222221 112233343332 1234444455667788888887
Q ss_pred ccC-CHHHHHHHHHHHHhhcC-CCCCCccccccceEEEcCCCCeEEEEeecCCCCCCCeEEEEEEecccccCcchHHHHH
Q 006560 373 GNL-SQEEAIHISNIFKSIFS-VQPLPIEMRHQECVICLPSGANLVRNVSVKNKCETNSVIELYFQIEQEKGMELTRLKA 450 (640)
Q Consensus 373 Gni-~~~~~~~l~~~~~~~l~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 450 (640)
.+- ....+.+.+++|...++ ..|.+....-. ..+|-+.... ++..+ ..+...+.-... .-+.+.++-+
T Consensus 772 Ad~~q~~~vEkav~kFl~~lp~e~p~g~~st~d---~r~p~~~~~i-~~~~P--~fqvnyvgka~~----~vpyt~~d~a 841 (998)
T KOG2019|consen 772 ADPKQLTNVEKAVEKFLDSLPRENPSGSKSTWD---ARLPLRSEAI-RVVIP--TFQVNYVGKAGL----GVPYTHPDGA 841 (998)
T ss_pred cCcccchhHHHHHHHHHHhccccCCCCCccCcc---ccCCCCceeE-EEecc--ccchhhhhhhcc----cccCCCCCCc
Confidence 764 33356677888888887 33322110001 1223222211 11111 111111110001 1123445556
Q ss_pred HHHHHHHHhc-hhhHHHHHhhcccceEEEeeeeeeCceeeEEEEEEcCCCChhhHHHHHHHHHHHHHHHh-cCCCHHHHH
Q 006560 451 LIDLFDEILE-EPFFNQLRTKEQLGYVVECSPRVTYRVFGFCFCIQSSKYNPIYLQERIDNFISGLDELL-EGLDDESFE 528 (640)
Q Consensus 451 ~~~ll~~~l~-s~lf~~LR~k~~LgY~v~s~~~~~~~~~~~~~~vqs~~~~~~~~~~~i~~fl~~~~~~l-~~~se~ef~ 528 (640)
.+.+|+.+++ ..|.+++|+ +|.+|.-++.+....|+..+.-| .+|.- .+.++.|-..-.-.. ..+++++++
T Consensus 842 sl~vlS~~lt~k~Lh~evRe-kGGAYGgg~s~~sh~GvfSf~SY-----RDpn~-lktL~~f~~tgd~~~~~~~~~~dld 914 (998)
T KOG2019|consen 842 SLQVLSKLLTNKWLHDEVRE-KGGAYGGGCSYSSHSGVFSFYSY-----RDPNP-LKTLDIFDGTGDFLRGLDVDQQDLD 914 (998)
T ss_pred HHHHHHHHHHHHHHHHHHHH-hcCccCCccccccccceEEEEec-----cCCch-hhHHHhhcchhhhhhcCCccccchh
Confidence 6777777775 568899998 57799999987776665433222 24433 335566554332222 468999999
Q ss_pred HHHHHHHHHhcCCCCChhHHHHHHHHHHhccccccccchHhHHHHhcCCHHHHHHHHHHHcccCCCCcceEEEEEecCCC
Q 006560 529 NYRSGLMAKLLEKDPSLTYESNRFWNQITDKRYMFDQSQKEAEDLKSIKKNDVISWYKTYLQQWSPKCRRLAVRVWGCNT 608 (640)
Q Consensus 529 ~~k~~l~~~~~~~~~sl~~~~~~~w~~i~~~~~~f~~~~~~~~~l~~vT~~dv~~~~~~~l~~~~~~~~~l~i~v~g~~~ 608 (640)
.+|-+.++..-.. .....+. +-..+ .| ..=+.++...+.|-+++..|+.+++++|+... .+...+.+.|...
T Consensus 915 eAkl~~f~~VDap-~~P~~kG--~~~fl-~g-vtDemkQarREqll~vSl~d~~~vae~yl~~~---~~~~~vav~g~E~ 986 (998)
T KOG2019|consen 915 EAKLGTFGDVDAP-QLPDAKG--LLRFL-LG-VTDEMKQARREQLLAVSLKDFKAVAEAYLGVG---DKGVAVAVAGPED 986 (998)
T ss_pred hhhhhhcccccCC-cCCcccc--hHHHH-hc-CCHHHHHHHHHHHHhhhHHHHHHHHHHHhccC---CcceEEEeeCccC
Confidence 9999888765432 2222222 11111 11 22244556667788999999999999999753 3456666666654
Q ss_pred C
Q 006560 609 N 609 (640)
Q Consensus 609 ~ 609 (640)
.
T Consensus 987 ~ 987 (998)
T KOG2019|consen 987 I 987 (998)
T ss_pred c
Confidence 3
No 16
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=2.6e-08 Score=108.79 Aligned_cols=388 Identities=11% Similarity=0.022 Sum_probs=234.3
Q ss_pred CeEeecCCceEEEeeccCcccCcceEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHhhh----hhcccc--cccEEEEE
Q 006560 191 PTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELNEI----IYQASV--AKLETSVS 264 (640)
Q Consensus 191 P~~~~~~~g~~v~~~~d~~f~~P~~~i~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~----~~~a~~--ag~~~~~~ 264 (640)
-..+..+||+++....|.. .++....+....|...+.....|+|+++..|+-.+..+. .+...+ -|-+...+
T Consensus 24 y~~I~LpNGl~~LlisDP~--a~ks~aAL~V~vGs~~DP~e~~GLAHflEHmlfmGseKYP~~~~f~~fLskhgGs~NA~ 101 (937)
T COG1025 24 YRAIKLPNGLRALLVSDPQ--ADKSSAALVVPVGSFDDPEEYPGLAHFLEHMLFMGSEKYPDEGGFSEFLSKHGGSHNAS 101 (937)
T ss_pred eeEEECCCCceEEEecCCC--CCccceeEEeecCCCCChhhcccHHHHHHHHHHhcCccCCCccchHHHHHHcCCccccc
Confidence 4678899999999999997 789999999998876655566899999999997654432 111111 24444444
Q ss_pred EecceeEEEEeecCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhccccCccchHHHHHHHhccCCCCCH----H
Q 006560 265 IFSDKLELKVYGFNDKLPVLLSKILAIAKSFLPSDDRFKVIKEDVVRTLKNTNMKPLSHSSYLRLQVLCQSFYDV----D 340 (640)
Q Consensus 265 ~~~~g~~i~~~g~s~~l~~~l~~~~~~l~~~~~~~~~f~~~k~~~~~~l~~~~~~p~~~a~~~~~~~l~~~~~~~----~ 340 (640)
...+...+-+.--.+.++.++..+++.+.+|-|+++..++++..+-.++.....+-.....+ +.+.+.++.++. .
T Consensus 102 T~~~~T~fyFeV~~~al~~ALDrFa~ff~~PLf~~e~~dRE~~AV~sE~~~~~~~D~~R~~~-~~~~~~np~HP~srFs~ 180 (937)
T COG1025 102 TAGERTAFYFEVENDALEGALDRFADFFIEPLFNKEALDRERNAVNSEFTMNLTSDGWRMYQ-VQALTANPGHPLSKFST 180 (937)
T ss_pred cCCCceeEEEEecHHHHHHHHHHHHHHHhccccChHHHHHHHHHHHHHHhcCcCchHHHHHH-HHHhhcCCCCCccccCC
Confidence 44444555555567889999999999999999999999999999999998876543333333 344444433221 2
Q ss_pred HHHhhhcc----CCHHHHHHHHHHHHhcceeEEEEeccCCHHHHHHHHHHHHhhcCCCCCCccccccceEEEcCCCCeEE
Q 006560 341 EKLSILHG----LSLADLMAFIPELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSVQPLPIEMRHQECVICLPSGANLV 416 (640)
Q Consensus 341 ~~~~~l~~----it~ed~~~~~~~~~~~~~~~~~v~Gni~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~ 416 (640)
|-+++|.. ...+++++|++++|.+.+|.++|.|+=+.+++.++..++++.++.+.......|.+..-....+....
T Consensus 181 GN~~TL~~~p~~~v~~el~ef~~~~YSa~~M~lviyg~q~ldeL~~~a~~~F~~Ipn~~~~~p~~p~p~~~d~~t~~ii~ 260 (937)
T COG1025 181 GNLETLSDKPGLVVQQELKEFHEKHYSANNMKLVIYGNQPLDELAKLAADLFGDIPNRARKIPPIPVPVVTDEQTGKIIH 260 (937)
T ss_pred CChhhhccCCCchHHHHHHHHHHHhcChhheEEEEecCCCHHHHHHHHHHHhCcCCCCCCCCCCCCCCCCChHHhCceEE
Confidence 44566655 55899999999999999999999999999999999999998887653222112211110011222211
Q ss_pred EEeecCCCCCCCeEEEEEEecccccCc-chHHHHHHHHHHHHHhchhhHHHHHhhcccceEEEeeeeeeCceee-EEEEE
Q 006560 417 RNVSVKNKCETNSVIELYFQIEQEKGM-ELTRLKALIDLFDEILEEPFFNQLRTKEQLGYVVECSPRVTYRVFG-FCFCI 494 (640)
Q Consensus 417 ~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~ll~~~l~s~lf~~LR~k~~LgY~v~s~~~~~~~~~~-~~~~v 494 (640)
+. |..+...+.++|+++..-+. .+....++..|++.=-..-|-.-|. ++||+-.+.++.....+..| +.+.+
T Consensus 261 --i~---p~~~~~~L~i~f~i~~~~~~~~~~~~~~~s~Lig~es~gsL~~~Lk-~~Glit~l~a~~~~~~~n~~~f~is~ 334 (937)
T COG1025 261 --IV---PAKPRPRLRIYFPIDDNSAKFRSKPDEYLSHLIGNESPGSLLAWLK-KQGLITELSAGLDPISGNYGVFAISY 334 (937)
T ss_pred --ec---cCCCCceEEEEEEcCCcccccccCCHHHHHHHhccCCCchHHHHHH-hccchhhhccccccccCCcceEEEEe
Confidence 21 22344556667773211111 1122344555554322334555565 58899999888776654333 33332
Q ss_pred E---cCCCChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC-CCChhHHHHHHHHHHhccccccccchHhH
Q 006560 495 Q---SSKYNPIYLQERIDNFISGLDELLEGLDDESFENYRSGLMAKLLEK-DPSLTYESNRFWNQITDKRYMFDQSQKEA 570 (640)
Q Consensus 495 q---s~~~~~~~~~~~i~~fl~~~~~~l~~~se~ef~~~k~~l~~~~~~~-~~sl~~~~~~~w~~i~~~~~~f~~~~~~~ 570 (640)
. .+-++.+++...+-++++-+.+ +++....|+...+-.--.+.-. .....+...++...+.. ++.+......
T Consensus 335 ~LT~~Gl~~~~~VI~~~F~yl~~l~~--~~~~~~~f~Elq~v~~l~f~y~~~t~~~~~~~~l~~~m~~--~p~~~~~~~~ 410 (937)
T COG1025 335 ELTDKGLAHYDRVIALTFQYLNLLRE--KGIPKYTFDELQNVLDLDFRYPSKTRPMDYVSWLADNMER--EPVEHTLYAS 410 (937)
T ss_pred ehhhcchhhHHHHHHHHHHHHHHHHh--ccchhhHHHHHHHHHHhhhcccccCChHHHHHHHHHhccc--CChhhhhchh
Confidence 2 2233444544444444443333 6777777777654333223222 12222333333333322 2222222223
Q ss_pred HHHhcCCHHHHHHHHHHHcccC
Q 006560 571 EDLKSIKKNDVISWYKTYLQQW 592 (640)
Q Consensus 571 ~~l~~vT~~dv~~~~~~~l~~~ 592 (640)
-.+..-..++++.++.-.- |+
T Consensus 411 ~~~~~yd~~~~~~~l~~~~-pe 431 (937)
T COG1025 411 LVLPRYDPKAIQERLALMT-PE 431 (937)
T ss_pred hcccccCHHHHHHHHHhhC-cc
Confidence 3445567788888886544 63
No 17
>KOG2583 consensus Ubiquinol cytochrome c reductase, subunit QCR2 [Energy production and conversion]
Probab=99.18 E-value=1.6e-07 Score=92.11 Aligned_cols=373 Identities=12% Similarity=0.067 Sum_probs=236.8
Q ss_pred cCCceEEEeeccCcccCcceEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHhh-----hhhcccccccEEEEEEeccee
Q 006560 196 DEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELNE-----IIYQASVAKLETSVSIFSDKL 270 (640)
Q Consensus 196 ~~~g~~v~~~~d~~f~~P~~~i~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-----~~~~a~~ag~~~~~~~~~~g~ 270 (640)
..||+.|--...+ +|..++.+.|+.+..+++..+.++.+|+.........+ .....++.|-.++...+.+-+
T Consensus 28 l~ngL~Vas~e~~---~~is~l~l~~~AGSRYe~~~~~G~sHllr~f~g~~Tq~~sal~ivr~se~~GG~Lss~~tRe~~ 104 (429)
T KOG2583|consen 28 LVNGLTVASREAP---TAISSLSLAFRAGSRYEPADQQGLSHLLRNFVGRDTQERSALKIVRESEQLGGTLSSTATRELI 104 (429)
T ss_pred cccceEEEeccCC---CcceEEEEEEecCccCCccccccHHHHHHHhcccCccccchhhhhhhhHhhCceeeeeeecceE
Confidence 4588888877755 68999999999999999988899999988777554333 223335567788888888899
Q ss_pred EEEEeecCCCHHHHHHHHHHHhccCCCCHHHHHHHH-HHHHHHHhccccCccchHHHHHHHhccCCC-----CCHHHHHh
Q 006560 271 ELKVYGFNDKLPVLLSKILAIAKSFLPSDDRFKVIK-EDVVRTLKNTNMKPLSHSSYLRLQVLCQSF-----YDVDEKLS 344 (640)
Q Consensus 271 ~i~~~g~s~~l~~~l~~~~~~l~~~~~~~~~f~~~k-~~~~~~l~~~~~~p~~~a~~~~~~~l~~~~-----~~~~~~~~ 344 (640)
.++++...|.++..+..+.+.+..|.|.+=+++... ..+..+ ....+|+..+.+.+.+..|.+. |.+. -
T Consensus 105 ~~tvt~lrd~~~~~l~~L~~V~~~paFkPwEl~D~~~~ti~~~--l~~~t~~~~a~e~lH~aAfRngLgnslY~p~---~ 179 (429)
T KOG2583|consen 105 GLTVTFLRDDLEYYLSLLGDVLDAPAFKPWELEDVVLATIDAD--LAYQTPYTIAIEQLHAAAFRNGLGNSLYSPG---Y 179 (429)
T ss_pred EEEEEEecccHHHHHHHHHHhhcccCcCchhhhhhhhhhhHHH--hhhcChHHHHHHHHHHHHHhcccCCcccCCc---c
Confidence 999999999999999999999999999987777666 333222 2335799999998888777542 3332 2
Q ss_pred hhccCCHHHHHHHHHHHHhcceeEEEEeccCCHHHHHHHHHHHHhhcCCCCCCccccccceEEEcCCCCeEEEEeecCCC
Q 006560 345 ILHGLSLADLMAFIPELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSVQPLPIEMRHQECVICLPSGANLVRNVSVKNK 424 (640)
Q Consensus 345 ~l~~it~ed~~~~~~~~~~~~~~~~~v~Gni~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 424 (640)
.+.+++.+|+..|..+.|...++.++-+ |++.+.++...+++.-..+..+... .| .+...|... ...
T Consensus 180 ~vg~vss~eL~~Fa~k~fv~gn~~lvg~-nvd~~~L~~~~~~~~~~~~~~~~k~--a~----a~~~gGe~R---k~~--- 246 (429)
T KOG2583|consen 180 QVGSVSSSELKDFAAKHFVKGNAVLVGV-NVDHDDLKQFADEYAPIRDGLPLKP--AP----AKYSGGEAR---KDA--- 246 (429)
T ss_pred cccCccHHHHHHHHHHHhhccceEEEec-CCChHHHHHHHHHhccccCCCCCCC--CC----ccccCCccc---ccc---
Confidence 4679999999999999999999976655 5788889888877621111111110 00 111122111 111
Q ss_pred CCCCeEEEEEEecccccCc--chHHHHHHHHHHHHHhc--------hhhHHHHHhhcc-cceEEEeeeeeeCceeeEEEE
Q 006560 425 CETNSVIELYFQIEQEKGM--ELTRLKALIDLFDEILE--------EPFFNQLRTKEQ-LGYVVECSPRVTYRVFGFCFC 493 (640)
Q Consensus 425 ~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~ll~~~l~--------s~lf~~LR~k~~-LgY~v~s~~~~~~~~~~~~~~ 493 (640)
..+-..+++.. .|. .+.+..+...++-+.+. .-++.++--.-+ -|-++.+...++.+-+-+.++
T Consensus 247 -~g~~~~v~vag----egAAa~~~k~~~a~av~~~~Lg~~~~~k~~t~~~~~aa~~a~~~~~s~sA~~a~ysDsGL~gv~ 321 (429)
T KOG2583|consen 247 -RGNRVHVAVAG----EGAAAGNLKVLAAQAVLLAALGNSAPVKRGTGLLSEAAGAAGEQGASASAFNAPYSDSGLFGVY 321 (429)
T ss_pred -CCceeEEEEec----CcccccchHHHHHHHHHHHHHhcccccccccchHHHHHhhccccCceeeeecccccCCceEEEE
Confidence 12222222222 222 22333333333333332 234444442211 344555555444332223344
Q ss_pred EEcCCCChhhHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhccccccccchHhHHH
Q 006560 494 IQSSKYNPIYLQERIDNFISGLDELL-EGLDDESFENYRSGLMAKLLEKDPSLTYESNRFWNQITDKRYMFDQSQKEAED 572 (640)
Q Consensus 494 vqs~~~~~~~~~~~i~~fl~~~~~~l-~~~se~ef~~~k~~l~~~~~~~~~sl~~~~~~~w~~i~~~~~~f~~~~~~~~~ 572 (640)
+.+. ..++.+.+......+...+ .+++...-..+++.+..........+......... . -...+.++..
T Consensus 322 ~~~~---~~~a~~~v~s~v~~lks~~~~~id~~~~~a~~~~l~~~~~ss~~a~~~~~~~~a~------~-~~~~d~~i~~ 391 (429)
T KOG2583|consen 322 VSAQ---GSQAGKVVSSEVKKLKSALVSDIDNAKVKAAIKALKASYLSSVEALELATGSQAN------L-VSEPDAFIQQ 391 (429)
T ss_pred EEec---CccHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhcchHHHHHhhHHHhc------C-CCChHHHHHH
Confidence 4332 1234556666666666555 67887777777777777777765444333222211 0 0145689999
Q ss_pred HhcCCHHHHHHHHHHHcccCCCCcceEEEEEecCCCCc
Q 006560 573 LKSIKKNDVISWYKTYLQQWSPKCRRLAVRVWGCNTNI 610 (640)
Q Consensus 573 l~~vT~~dv~~~~~~~l~~~~~~~~~l~i~v~g~~~~~ 610 (640)
|++||..||.+++++++.. ++++.-+|+-...
T Consensus 392 id~Vt~sdV~~a~kk~~s~------kls~aA~Gnl~~v 423 (429)
T KOG2583|consen 392 IDKVTASDVQKAAKKFLSG------KLSLAAYGNLSNV 423 (429)
T ss_pred hccccHHHHHHHHHHhccC------cceeeeeccccCC
Confidence 9999999999999998853 6999999886544
No 18
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=3.9e-08 Score=102.13 Aligned_cols=391 Identities=14% Similarity=0.073 Sum_probs=228.9
Q ss_pred EeecCCceEEEeeccCcccCcceEEEEEEecCCCCCC--H-----------HHHHHHHHHHHHHHHHHhhhhhccccccc
Q 006560 193 CIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDN--V-----------KNCILTELFIHLLKDELNEIIYQASVAKL 259 (640)
Q Consensus 193 ~~~~~~g~~v~~~~d~~f~~P~~~i~~~~~~~~~~~~--~-----------~~~~~~~l~~~~l~~~l~~~~~~a~~ag~ 259 (640)
+.+..-|+++.+.-... +...+++.|++|....+ | +++...+-+-.|++.++... ..| ..+-
T Consensus 56 lkH~~Tgae~lhl~reD---~N~vFsI~FrTpp~dstGiPHILEHtvLCGS~KYPvrdPFfkmLnrSLatF-mNA-fT~p 130 (998)
T KOG2019|consen 56 LKHKKTGAEVLHLDRED---ENNVFSIVFRTPPKDSTGIPHILEHTVLCGSRKYPVRDPFFKMLNRSLATF-MNA-FTAP 130 (998)
T ss_pred eeecCCCceeEeeccCC---CCceeEEEeecCCCccCCCchhhhhheeeccCcCcccChHHHHHHHHHHHH-Hhh-ccCC
Confidence 33455688888876554 34567888988764322 1 12333444556666666542 111 1122
Q ss_pred EEEEEEecceeEEEEeecCCCHHHHHHHHHHHhccCCCCHHHHHHH------------------HHHHHHHHhccccCcc
Q 006560 260 ETSVSIFSDKLELKVYGFNDKLPVLLSKILAIAKSFLPSDDRFKVI------------------KEDVVRTLKNTNMKPL 321 (640)
Q Consensus 260 ~~~~~~~~~g~~i~~~g~s~~l~~~l~~~~~~l~~~~~~~~~f~~~------------------k~~~~~~l~~~~~~p~ 321 (640)
++.+++.. +.-...+..+....+|....|..-+..|.++ |-.+-++.+....+|.
T Consensus 131 D~T~yPfa-------ttN~kDf~NL~dVYLDAtffPklr~~dF~QEGWr~Eh~dpsd~~SpivfkGVVfNEMKG~~S~~~ 203 (998)
T KOG2019|consen 131 DYTFYPFA-------TTNTKDFYNLRDVYLDATFFPKLRKLDFQQEGWRLEHNDPSDPISPIVFKGVVFNEMKGQYSDPD 203 (998)
T ss_pred Ccceeecc-------cCChHHHHHHHHHhhhcccchHHHhhhhhhhcceeecCCCCCCcccceeeeeeeecccccccChh
Confidence 33444321 1112236667777777777776555555442 3445555666666777
Q ss_pred chHHHHHHHhccCC-CCCH--HHHHhhhccCCHHHHHHHHHHHHhcceeEEEEeccCCHHHHHHHHHHHHhhcCCCCCCc
Q 006560 322 SHSSYLRLQVLCQS-FYDV--DEKLSILHGLSLADLMAFIPELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSVQPLPI 398 (640)
Q Consensus 322 ~~a~~~~~~~l~~~-~~~~--~~~~~~l~~it~ed~~~~~~~~~~~~~~~~~v~Gni~~~~~~~l~~~~~~~l~~~~~~~ 398 (640)
+.....+.+.+++. .|+. .|..-.|-.+++|++++|++++|+|.|..++..||+..++....++.-+..+... +.
T Consensus 204 ~if~~~~Qq~L~p~~tYgv~SGGDPl~IpdLt~eelk~FHr~~YHPSNAri~tYGn~Pl~~~l~~l~e~~~~~sk~--~~ 281 (998)
T KOG2019|consen 204 YIFGMLFQQALFPENTYGVNSGGDPLDIPDLTYEELKEFHRQHYHPSNARIFTYGNFPLEDLLKQLEEDFSPFSKR--EL 281 (998)
T ss_pred HHHHHHHHHhhCccccccccCCCCcccCccccHHHHHHHHHhccCCCcceeEeecCchHHHHHHHHHHhhcccccc--cc
Confidence 77777777888864 3543 3567788899999999999999999999999999999999988876432222221 11
Q ss_pred cccccceEEEcCCCCeEEEEee---cCCCCCCCeEEEEEEecccccC-cchHHHHHHHHHHHHHh----chhhHHHHHhh
Q 006560 399 EMRHQECVICLPSGANLVRNVS---VKNKCETNSVIELYFQIEQEKG-MELTRLKALIDLFDEIL----EEPFFNQLRTK 470 (640)
Q Consensus 399 ~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~ll~~~l----~s~lf~~LR~k 470 (640)
.. +........+....+...+ ...| ..+..+.+.|- .+ +.+..+..++.+|+.+| +|+|+..|-|
T Consensus 282 s~-kv~~qk~f~kp~rvve~~p~d~~~~p-~Kq~~~s~s~L----~~~p~d~~etfaL~~L~~Ll~~gpsSp~yk~LiE- 354 (998)
T KOG2019|consen 282 SS-KVTFQKLFDKPRRVVEKGPADPGDLP-KKQTKCSNSFL----SNDPLDTYETFALKVLSHLLLDGPSSPFYKALIE- 354 (998)
T ss_pred cC-ccccccccccCceeeeecCCCCCCCc-cceeEEEEEee----cCCchhHHHHHHHHHHHHHhcCCCccHHHHHHHH-
Confidence 00 0000001111111111000 1111 23444444444 33 33344555666776665 7999999986
Q ss_pred cccc--eEEEeeeeeeCceeeEEEEEEcC-CCChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCChhH
Q 006560 471 EQLG--YVVECSPRVTYRVFGFCFCIQSS-KYNPIYLQERIDNFISGLDELLEGLDDESFENYRSGLMAKLLEKDPSLTY 547 (640)
Q Consensus 471 ~~Lg--Y~v~s~~~~~~~~~~~~~~vqs~-~~~~~~~~~~i~~fl~~~~~~l~~~se~ef~~~k~~l~~~~~~~~~sl~~ 547 (640)
-||| .+|.+++........+.+.+|.- ..+.+.+.+.|...++++.+ +++..+-++.+...+.-+++......+-
T Consensus 355 SGLGtEfsvnsG~~~~t~~~~fsVGLqGvseediekve~lV~~t~~~lae--~gfd~drieAil~qiEislk~qst~fGL 432 (998)
T KOG2019|consen 355 SGLGTEFSVNSGYEDTTLQPQFSVGLQGVSEEDIEKVEELVMNTFNKLAE--TGFDNDRIEAILHQIEISLKHQSTGFGL 432 (998)
T ss_pred cCCCcccccCCCCCcccccceeeeeeccccHHHHHHHHHHHHHHHHHHHH--hccchHHHHHHHHHhhhhhhccccchhH
Confidence 7888 78888877766666666667653 23566666666666666544 7899998988888887777765544322
Q ss_pred H-HHHHHHHHhccccccccc--hHhHHHHh----cCCHHHHHHHHHHHcccCCCCcceEEEEEecCCCC
Q 006560 548 E-SNRFWNQITDKRYMFDQS--QKEAEDLK----SIKKNDVISWYKTYLQQWSPKCRRLAVRVWGCNTN 609 (640)
Q Consensus 548 ~-~~~~w~~i~~~~~~f~~~--~~~~~~l~----~vT~~dv~~~~~~~l~~~~~~~~~l~i~v~g~~~~ 609 (640)
. +...-..+.++.-+|++. ++.++.++ .=.+.=++..+++|+.. +..++++.+-|+...
T Consensus 433 ~L~~~i~~~W~~d~DPfE~Lk~~~~L~~lk~~l~ek~~~lfq~lIkkYiln---n~h~~t~smqpd~e~ 498 (998)
T KOG2019|consen 433 SLMQSIISKWINDMDPFEPLKFEEQLKKLKQRLAEKSKKLFQPLIKKYILN---NPHCFTFSMQPDPEF 498 (998)
T ss_pred HHHHHHhhhhccCCCccchhhhhhHHHHHHHHHhhhchhHHHHHHHHHHhc---CCceEEEEecCCchh
Confidence 1 111222333333345543 22233333 22455688888999986 355788888777543
No 19
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=4.3e-07 Score=101.16 Aligned_cols=390 Identities=11% Similarity=-0.008 Sum_probs=227.8
Q ss_pred CeEeecCCceEEEeeccCcccCcceEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHhhh----hhccccc--ccEEEEE
Q 006560 191 PTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELNEI----IYQASVA--KLETSVS 264 (640)
Q Consensus 191 P~~~~~~~g~~v~~~~d~~f~~P~~~i~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~----~~~a~~a--g~~~~~~ 264 (640)
-..+..+||+++.+..|.. +=+....+....|...+.....|+|+++..|+-.+..+. .|...++ |-+...+
T Consensus 28 yr~~~L~Ngl~alLisDp~--tD~ssaal~V~vGS~~DP~dl~GLAHF~EHMlFmGS~KYP~En~y~~~lsk~gGssNA~ 105 (974)
T KOG0959|consen 28 YRGIELTNGLRALLISDPK--TDKSSAALDVKVGSFSDPEDLQGLAHFCEHMLFMGSEKYPDENEYSKFLSKNGGSSNAY 105 (974)
T ss_pred eeEEEecCCceEEEecCCC--CCccceeeeeeccccCCccccccHHHHHHHHHhhccccCCCcchhHHHHHhcCCccccc
Confidence 4667889999999999875 335666777777776767777999999999998665542 2223333 3333333
Q ss_pred EecceeEEEEeecCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhccccCccchHHHHHHHhccCCC-CC--HHH
Q 006560 265 IFSDKLELKVYGFNDKLPVLLSKILAIAKSFLPSDDRFKVIKEDVVRTLKNTNMKPLSHSSYLRLQVLCQSF-YD--VDE 341 (640)
Q Consensus 265 ~~~~g~~i~~~g~s~~l~~~l~~~~~~l~~~~~~~~~f~~~k~~~~~~l~~~~~~p~~~a~~~~~~~l~~~~-~~--~~~ 341 (640)
...+.....+.--.++++.+|..+++++..|.++++.-++++..+..+.++...+-..........+..+++ ++ .-|
T Consensus 106 T~~e~T~y~F~V~~~~l~~ALDrFaqFf~~Plf~~~a~eREv~AVdSE~~~nl~~D~wr~~ql~~~l~~~~hp~~kF~tG 185 (974)
T KOG0959|consen 106 TDSEHTNYYFDVQHDHLEGALDRFAQFFSDPLFNKSATEREVGAVDSEHEKNLNSDGWRFDQLLRSLSNPGHPYSKFSTG 185 (974)
T ss_pred cccccceEEEecchHHHHHHHHHHHHHhhCcccChHHHHHHHHHHHHHHHhccCcchhHHHHHHHHhcCCCCcchhcccc
Confidence 333333444444567799999999999999999999999999999999888776444444444444433332 22 224
Q ss_pred HHhhhccCC-----HHHHHHHHHHHHhcceeEEEEeccCCHHHHHHHHHHHHhhcCCCCCCccccccceEEEcCCCCeEE
Q 006560 342 KLSILHGLS-----LADLMAFIPELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSVQPLPIEMRHQECVICLPSGANLV 416 (640)
Q Consensus 342 ~~~~l~~it-----~ed~~~~~~~~~~~~~~~~~v~Gni~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~ 416 (640)
..++|.... .+.+..||+++|..++|.++|+|+-+.+....++...++.+++...+...++.. +..+......
T Consensus 186 N~~tL~~~p~~~~~r~~L~kF~k~~Yssn~M~l~i~G~eslD~Le~lv~~~F~~i~N~~~~~p~f~~~--p~~~e~~~~~ 263 (974)
T KOG0959|consen 186 NKKTLLEGPREIDLRDELLKFYKNWYSSNIMTLVIVGKESLDVLESLVTRLFDEISNKKKPRPVFPEP--PFLPEELKKL 263 (974)
T ss_pred chhhhhhccccchHHHHHHHHHHhhcccccceEEEEcCCChhHHHHHHHHHcccccccCCCCCcccCC--CCChHHhCcE
Confidence 566776666 899999999999999999999999999999998888777776553332222221 1111111111
Q ss_pred EEeecCCCCCCCeEEEEEEecccccCc-chHHHHHHHHHHHHHhchhhHHHHHhhcccceEEEeeeeeeC-ceeeEEEEE
Q 006560 417 RNVSVKNKCETNSVIELYFQIEQEKGM-ELTRLKALIDLFDEILEEPFFNQLRTKEQLGYVVECSPRVTY-RVFGFCFCI 494 (640)
Q Consensus 417 ~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~ll~~~l~s~lf~~LR~k~~LgY~v~s~~~~~~-~~~~~~~~v 494 (640)
+.+... ..-..+.+.|++|...+. .+.+...+..|++.-=.+-|...||. ++++-+..++..... +...+.+.+
T Consensus 264 ~~v~pi---k~~~~l~is~~~p~~~~~y~~kP~~y~~hLigheg~GSL~~~Lk~-~gw~~sl~a~~~~~as~~~~f~v~i 339 (974)
T KOG0959|consen 264 VRVVPI---KDGRSLMISWPVPPLNHHYKSKPLRYLSHLIGHEGPGSLLSYLKR-LGWATSLEAGIPEFASGYSFFNVSI 339 (974)
T ss_pred EEEEec---cccceEEEEEecCCcccccccCcHHHHHHHhccCCcchHHHHHHH-hhchheeecCCCccccccceEEEEE
Confidence 122222 223345555773321121 22344555666665555678899996 566666666655332 233333444
Q ss_pred EcCCCChhhHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHH--hcCCCCChhHHHHHHHHHHhccccccccchHhHH
Q 006560 495 QSSKYNPIYLQERIDNFISGLDELL-EGLDDESFENYRSGLMAK--LLEKDPSLTYESNRFWNQITDKRYMFDQSQKEAE 571 (640)
Q Consensus 495 qs~~~~~~~~~~~i~~fl~~~~~~l-~~~se~ef~~~k~~l~~~--~~~~~~sl~~~~~~~w~~i~~~~~~f~~~~~~~~ 571 (640)
--....-+.+++.|....+.+.... .+....-|+....-=... +..+. ...+.+..+..... -|+....-....
T Consensus 340 dLtd~G~e~~~~ii~~~f~yi~~l~~~~~~~~i~~E~~~~~~~~Frf~~k~-~p~~~~~~~~~nlq--~~P~~~il~~~~ 416 (974)
T KOG0959|consen 340 DLTDEGLEHVDEIIGLVFNYIKLLQSAGPEKWIFKELQLISEVKFRFQDKE-PPMEYASEIASNLQ--YYPVEDVLTGSY 416 (974)
T ss_pred EeccccchhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhhhhheeecccC-CcHHHHHHHHhhcc--cCChHHhhcchh
Confidence 3222244566666666666555333 333333344432211112 22222 22333333333222 122222112234
Q ss_pred HHhcCCHHHHHHHHHHHcccC
Q 006560 572 DLKSIKKNDVISWYKTYLQQW 592 (640)
Q Consensus 572 ~l~~vT~~dv~~~~~~~l~~~ 592 (640)
.+....++-+..... .+.|.
T Consensus 417 ll~~~~p~~i~~~~~-~L~p~ 436 (974)
T KOG0959|consen 417 LLTEFDPDLIQEVLS-SLVPS 436 (974)
T ss_pred hhhhcChHHHHHHHH-hcCcc
Confidence 555666666666654 46663
No 20
>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification. ; InterPro: IPR011765 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. The majority of the sequences in this entry are metallopeptidases and non-peptidase homologs belong to MEROPS peptidase family M16 (clan ME), subfamilies M16A, M16B and M16C; they include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The proteins classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3P7L_A 3P7O_A 3TUV_A 3GO9_A 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B ....
Probab=98.78 E-value=1.9e-08 Score=90.25 Aligned_cols=133 Identities=11% Similarity=0.074 Sum_probs=111.7
Q ss_pred EEEeeccCcccCcceEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHhh-----hhhcccccccEEEEEEecceeEEEEe
Q 006560 201 RFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELNE-----IIYQASVAKLETSVSIFSDKLELKVY 275 (640)
Q Consensus 201 ~v~~~~d~~f~~P~~~i~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-----~~~~a~~ag~~~~~~~~~~g~~i~~~ 275 (640)
+|+...++. .|.+.+.+.|..|...+++.+.+++.|+..++..+... ..-...-.|.+++.+.+.+.+.+.++
T Consensus 1 ~V~~~~~~~--~~~~~~~l~~~~Gs~~e~~~~~G~a~ll~~l~~~gs~~~~~~~l~~~l~~~G~~~~~~t~~d~t~~~~~ 78 (149)
T PF00675_consen 1 KVVLVEDPG--SPVVSVSLVFKAGSRYEPPGKPGLAHLLEHLLFRGSKKYSSDELQEELESLGASFNASTSRDSTSYSAS 78 (149)
T ss_dssp EEEEEESTT--SSEEEEEEEES-SGGGSCTTTTTHHHHHHHHTTSBBSSSBHHHHHHHHHHTTCEEEEEEESSEEEEEEE
T ss_pred CEEEEEcCC--CCEEEEEEEEeeccCCCCCCCCchhhhhhhhcccccchhhhhhhHHHhhhhccccceEecccceEEEEE
Confidence 467777765 78999999999998888888899999999998654221 11112334888899999999999999
Q ss_pred ecCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhccccCccchHHHHHHHhccCC
Q 006560 276 GFNDKLPVLLSKILAIAKSFLPSDDRFKVIKEDVVRTLKNTNMKPLSHSSYLRLQVLCQS 335 (640)
Q Consensus 276 g~s~~l~~~l~~~~~~l~~~~~~~~~f~~~k~~~~~~l~~~~~~p~~~a~~~~~~~l~~~ 335 (640)
+.+++++.+++.+.+.+.+|.|++++|+++|+.++.+++....+|...+.+.+.+.+|.+
T Consensus 79 ~~~~~~~~~l~~l~~~~~~P~f~~~~~~~~r~~~~~ei~~~~~~~~~~~~~~l~~~~f~~ 138 (149)
T PF00675_consen 79 VLSEDLEKALELLADMLFNPSFDEEEFEREREQILQEIEEIKENPQELAFEKLHSAAFRG 138 (149)
T ss_dssp EEGGGHHHHHHHHHHHHHSBGGCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTT
T ss_pred EecccchhHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999988889888899999888863
No 21
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=3.7e-05 Score=80.54 Aligned_cols=308 Identities=13% Similarity=0.118 Sum_probs=174.8
Q ss_pred eeEEEEeecCCCHHHHHHHHHHHhccCCCCHHHHHHHHH----------HHHHHHhccccCccchHHHHHHHhccCC--C
Q 006560 269 KLELKVYGFNDKLPVLLSKILAIAKSFLPSDDRFKVIKE----------DVVRTLKNTNMKPLSHSSYLRLQVLCQS--F 336 (640)
Q Consensus 269 g~~i~~~g~s~~l~~~l~~~~~~l~~~~~~~~~f~~~k~----------~~~~~l~~~~~~p~~~a~~~~~~~l~~~--~ 336 (640)
..+++..| ++.+..+|-..++.+.+|.++++.|-.+.- .+-.+.++...+-.....+....++||+ .
T Consensus 100 ~YtLStag-~dGFlklLPvy~dHiL~P~Ltdeaf~TEVyHI~geg~d~GVVySEMq~~es~~~~im~~~~~~~~yP~~sg 178 (1022)
T KOG0961|consen 100 AYTLSTAG-SDGFLKLLPVYIDHILTPMLTDEAFATEVYHITGEGNDAGVVYSEMQDHESEMESIMDRKTKEVIYPPFSG 178 (1022)
T ss_pred eEEeeccc-ccchHHHhHHHHHhhcCcccchhhhhhheeeecCCCCccceeehhhhhhhcccchhhhhhhheeecCCCCC
Confidence 34444444 345777888889999999999999987642 2222222322222334455556677764 2
Q ss_pred C--CHHHHHhhhccCCHHHHHHHHHHHHhcceeEEEEeccCCHHHHHHHHHHHHhhcCCCC--CCccccccce-----EE
Q 006560 337 Y--DVDEKLSILHGLSLADLMAFIPELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSVQP--LPIEMRHQEC-----VI 407 (640)
Q Consensus 337 ~--~~~~~~~~l~~it~ed~~~~~~~~~~~~~~~~~v~Gni~~~~~~~l~~~~~~~l~~~~--~~~~~~~~~~-----~~ 407 (640)
| ...|..+.|+.+|.|.+++|++++|.+.|+-+.|+|+++.+++....+.+...+..++ .|. .++.+- ..
T Consensus 179 Y~~eTGG~~knLR~lt~ekIR~yHK~~Y~~sN~cviVcG~v~~d~lL~~m~~~~neile~~s~vP~-~~~rPf~~tn~~~ 257 (1022)
T KOG0961|consen 179 YAVETGGRLKNLRELTLEKIRDYHKKFYHLSNMCVIVCGMVDHDQLLEIMNNVENEILEHMSTVPD-HFPRPFSFTNALS 257 (1022)
T ss_pred ceeccCCChhhHHHhhHHHHHHHHHHhccccceEEEEecCcCHHHHHHHHHHHHhhhhhccccCCC-CCCCCcccccCcc
Confidence 3 3557889999999999999999999999999999999999999999888776555432 111 121110 01
Q ss_pred EcCCCCeEEEEeecCCCCCCCeEEEEEEecccccCcc-hHHHHHHHHHHHHHhc----hhhHHHHHh-hcccceEEEeee
Q 006560 408 CLPSGANLVRNVSVKNKCETNSVIELYFQIEQEKGME-LTRLKALIDLFDEILE----EPFFNQLRT-KEQLGYVVECSP 481 (640)
Q Consensus 408 ~l~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~ll~~~l~----s~lf~~LR~-k~~LgY~v~s~~ 481 (640)
.++.. ++..++.+..+..+.+|.+.|- .... +.+...+..+|=..++ ++|-+++-+ +.-++-+|+...
T Consensus 258 ~i~e~--t~~tVefp~~Des~G~v~~aW~----g~s~sD~~t~~a~~vL~dyls~savapf~~~fVeieDP~assv~f~~ 331 (1022)
T KOG0961|consen 258 DIKES--TVHTVEFPTDDESRGAVEVAWF----GHSPSDLETHSALHVLFDYLSNSAVAPFQKDFVEIEDPLASSVSFHI 331 (1022)
T ss_pred cCCcc--ceeeeecCCcccccceEEEEEc----CCCHHHhhhHHHHHHHHHHhccccccccccceEEecCccccceeeee
Confidence 12222 2223444444677888988887 4433 3344444444444443 455544433 233555555432
Q ss_pred eeeCceeeEEEEEEcCCCChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcccc
Q 006560 482 RVTYRVFGFCFCIQSSKYNPIYLQERIDNFISGLDELLEGLDDESFENYRSGLMAKLLEKDPSLTYESNRFWNQITDKRY 561 (640)
Q Consensus 482 ~~~~~~~~~~~~vqs~~~~~~~~~~~i~~fl~~~~~~l~~~se~ef~~~k~~l~~~~~~~~~sl~~~~~~~w~~i~~~~~ 561 (640)
...- ...+.+.+++ ...+++...-..|++.+.+. ..++-+-.....++-+-++....++. +...+..++.+++
T Consensus 332 ~~~v-rc~i~L~f~g--VP~EKi~~~~~k~l~~l~et-~~iDm~Rm~~~i~~t~~~yL~nlE~n---~~s~fms~ii~d~ 404 (1022)
T KOG0961|consen 332 AEGV-RCDIRLNFAG--VPVEKIDECAPKFLDKLVET-ANIDMERMGYLIDQTILNYLVNLETN---APSDFMSHIIGDQ 404 (1022)
T ss_pred eccc-ceeEEEeecC--CcHHHhhhhhHHHHHHHHHh-cccCHHHHHHHHHHHHHHHHHhhhcC---ChHHHHHHHhhhh
Confidence 2211 2233344454 36778888888888766421 34443333332222222222222211 1122222222232
Q ss_pred ccccc-----------hHhHHHHhcCCHHHHHHHHHHHccc
Q 006560 562 MFDQS-----------QKEAEDLKSIKKNDVISWYKTYLQQ 591 (640)
Q Consensus 562 ~f~~~-----------~~~~~~l~~vT~~dv~~~~~~~l~~ 591 (640)
-|+.. -.+.+.|+.-...|-++..++||-.
T Consensus 405 ~ygnedg~~l~~~lk~l~~~~~L~~w~~kdW~~Llnk~Fve 445 (1022)
T KOG0961|consen 405 LYGNEDGELLKKRLKELDFLKKLKSWPAKDWVQLLNKYFVE 445 (1022)
T ss_pred hccCcchhHHHHHHHhHHHHHHHhhccHHHHHHHHHHHhcc
Confidence 22211 1245667778889999999999974
No 22
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=1.3e-05 Score=83.81 Aligned_cols=330 Identities=12% Similarity=0.119 Sum_probs=198.1
Q ss_pred eEEEEeecCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhccccCccchHHHHHHHhccCCC---CCH-----HH
Q 006560 270 LELKVYGFNDKLPVLLSKILAIAKSFLPSDDRFKVIKEDVVRTLKNTNMKPLSHSSYLRLQVLCQSF---YDV-----DE 341 (640)
Q Consensus 270 ~~i~~~g~s~~l~~~l~~~~~~l~~~~~~~~~f~~~k~~~~~~l~~~~~~p~~~a~~~~~~~l~~~~---~~~-----~~ 341 (640)
+.+.+..-.++.+..++.+--.+...-||+++.....++++.++.....+....+..+....+|+.. ++. +.
T Consensus 636 vn~~Ikv~a~~Y~~~v~Wi~~~l~~~VfD~~Ri~~~~~~~l~~i~~~KRdg~~vlss~~~~~lY~~~slk~s~d~L~~Ek 715 (1022)
T KOG0961|consen 636 VNLRIKVGADKYPLLVKWIQIFLQGVVFDPSRIHQCAQKLLGEIRDRKRDGCTVLSSAVASMLYGKNSLKISFDELVLEK 715 (1022)
T ss_pred eeEEEEEccCCcchhHHHHHHHhhhhccCHHHHHHHHHHHHhhhhhhhcCccEehHHHHHHHHhcccchhhcccHHHHHH
Confidence 6677777788889999999888888899999999999999998887776655566666666677532 332 22
Q ss_pred HHhhh----cc---CCHHHHHHHHHHHHhcceeEEEEeccCCHHHH-HHHHHHHHhhcCCCCCCccccc------cceEE
Q 006560 342 KLSIL----HG---LSLADLMAFIPELRSQLYIEGLCHGNLSQEEA-IHISNIFKSIFSVQPLPIEMRH------QECVI 407 (640)
Q Consensus 342 ~~~~l----~~---it~ed~~~~~~~~~~~~~~~~~v~Gni~~~~~-~~l~~~~~~~l~~~~~~~~~~~------~~~~~ 407 (640)
.++.| .+ -=++.+.+..+-.+..+.+.+.|+|||+.-+- ..-.+.+.+....+ -|...+. .....
T Consensus 716 ~l~ei~~~v~n~~~~Il~~~e~mR~y~l~~n~~~ihvvgDI~kid~~~~~Wn~l~~~~~~~-nP~~~f~~tf~~~~~~s~ 794 (1022)
T KOG0961|consen 716 LLEEISKDVMNNPEAILEKLEQMRSYALFSNGVNIHVVGDIDKIDPKMLSWNWLQADPRFG-NPGHQFSATFEAGENVSL 794 (1022)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhhcceEEEEEeehhcCCccccCchhhhcCcccC-CchhhcccccccCcccce
Confidence 22222 11 01233333333234456888999999975422 11122222222211 0111111 11112
Q ss_pred EcCCCCeEEEEeecCCCCCCCeEEEEEEecccccCcchHHHHHHHHHHHHHh---chhhHHHHHhhcccceEEEeeeeee
Q 006560 408 CLPSGANLVRNVSVKNKCETNSVIELYFQIEQEKGMELTRLKALIDLFDEIL---EEPFFNQLRTKEQLGYVVECSPRVT 484 (640)
Q Consensus 408 ~l~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ll~~~l---~s~lf~~LR~k~~LgY~v~s~~~~~ 484 (640)
.+.++.... -+..+. ...+ .++..+|. ......+..+...|+++.| ..+|++-+|- .||+|+........
T Consensus 795 e~gsssk~~-~I~~p~--sESs--~l~~sip~-~~~w~dpel~~~~l~~~YL~~~eGPfW~~IRG-~GLAYGanm~~~~d 867 (1022)
T KOG0961|consen 795 ELGSSSKEL-LIGVPG--SESS--FLYQSIPL-DANWNDPELIPAMLFGQYLSQCEGPFWRAIRG-DGLAYGANMFVKPD 867 (1022)
T ss_pred eccCCccee-EecCCC--cccc--ceeeeccc-ccccCCcchhHHHHHHHHHHhcccchhhhhcc-cchhccceeEEecc
Confidence 233332222 134332 2222 22333321 1123345566777888776 4799999997 68999998887776
Q ss_pred CceeeEEEEEEcCCCChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCC-CChhHHHHHHHH-HHhccccc
Q 006560 485 YRVFGFCFCIQSSKYNPIYLQERIDNFISGLDELLEGLDDESFENYRSGLMAKLLEKD-PSLTYESNRFWN-QITDKRYM 562 (640)
Q Consensus 485 ~~~~~~~~~vqs~~~~~~~~~~~i~~fl~~~~~~l~~~se~ef~~~k~~l~~~~~~~~-~sl~~~~~~~w~-~i~~~~~~ 562 (640)
.+..++.++-. .+|.+..++-...+..+..--..+++.+|+-+|...+..+.... ..+...++.+-. .+...+-+
T Consensus 868 ~~~~~~~iyr~---ad~~kaye~~rdiV~~~vsG~~e~s~~~~egAk~s~~~~~~~~Eng~~~~a~~~~~l~~~~q~~~~ 944 (1022)
T KOG0961|consen 868 RKQITLSIYRC---ADPAKAYERTRDIVRKIVSGSGEISKAEFEGAKRSTVFEMMKRENGTVSGAAKISILNNFRQTPHP 944 (1022)
T ss_pred CCEEEEEeecC---CcHHHHHHHHHHHHHHHhcCceeecHHHhccchHHHHHHHHHHhccceechHHHHHHHHHHhcCCc
Confidence 77666665543 27777777877777766543356899999999998887776544 334444444432 33333334
Q ss_pred cccchHhHHHHhcCCHHHHHHHHHHHcccCCCCcceEEEEEecCCCCcccc
Q 006560 563 FDQSQKEAEDLKSIKKNDVISWYKTYLQQWSPKCRRLAVRVWGCNTNIKES 613 (640)
Q Consensus 563 f~~~~~~~~~l~~vT~~dv~~~~~~~l~~~~~~~~~l~i~v~g~~~~~~~~ 613 (640)
|+ ..+.++|.+||.+|+.+..+.|+.+=..+ +...-.|....+++++.
T Consensus 945 fn--~~~leri~nvT~~~~~~~~~~y~~~~Fds-~~~va~i~~hpaKle~~ 992 (1022)
T KOG0961|consen 945 FN--IDLLERIWNVTSEEMVKIGGPYLARLFDS-KCFVASIAVHPAKLEEM 992 (1022)
T ss_pred cc--HHHHHHHHHhhHHHHHHhcccceehhhcc-cCceEEEeccHHHHHHH
Confidence 44 56889999999999999998887653222 23444444455555443
No 23
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only]
Probab=98.01 E-value=0.00046 Score=73.85 Aligned_cols=306 Identities=18% Similarity=0.159 Sum_probs=163.6
Q ss_pred hcHHHHHHHHHHHHHHHHhCCCchHHHHHHHHhhhcccccCCCCChHHHHH-HHHHhCCC-CCccceeec-cccCccCCH
Q 006560 22 EKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAA-ELAGNLLI-YPAEHVIYG-EYMYEVWDE 98 (640)
Q Consensus 22 ~~~~~ii~~~~~~i~~l~~~~~~~~~~~e~~~~~~~~f~~~~~~~~~~~~~-~la~~l~~-~~~~~vl~~-~~~~~~~d~ 98 (640)
.+.++.++.+ .+.+.+.-+++..++.-|.+........... |...+. .+...|.. -|......| ...+..+++
T Consensus 108 ~~~~~~l~ll---ad~l~~p~f~~~~~e~Ek~vil~ei~~~~d~-p~~~~~~~l~~~~~~~~p~~~~~~G~~e~I~~it~ 183 (438)
T COG0612 108 DNLDKALDLL---ADILLNPTFDEEEVEREKGVILEEIRMRQDD-PDDLAFERLLEALYGNHPLGRPILGTEESIEAITR 183 (438)
T ss_pred hhhHHHHHHH---HHHHhCCCCCHHHHHHHHHHHHHHHHhhccC-chHHHHHHHHHHhhccCCCCCCCCCCHHHHHhCCH
Confidence 4556666666 5666677788888876665555554443333 444433 33344433 444444444 456788999
Q ss_pred HHHHHHH-hccCcCceEEEEEeCCCCCCCcCcccccccccceeecCChHHHHHhcCCCCCCCCCCCCCCCCccCCCcccc
Q 006560 99 EMIKHLL-GFFMPENMRIDVVSKSFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNPPEIDVSLQLPSQNEFIPTDFSIR 177 (640)
Q Consensus 99 ~~i~~~l-~~l~p~n~~i~~~~~~~~~~~~~~~~~~~~~~Y~~~~i~~~~~~~~~~~~~~~~~~~lP~~N~~ip~~~~l~ 177 (640)
++++++. ++.+|+||.|++++.--.+.-....+++ ...|.. . .+....|..-+..+...
T Consensus 184 ~dl~~f~~k~Y~p~n~~l~vvGdi~~~~v~~~~~~~--------------f~~~~~-~--~~~~~~~~~~~~~~~~~--- 243 (438)
T COG0612 184 EDLKDFYQKWYQPDNMVLVVVGDVDAEEVVELIEKY--------------FGDLPG-A--APPPKIPPEPPLGPERV--- 243 (438)
T ss_pred HHHHHHHHHhcCcCceEEEEecCCCHHHHHHHHHHH--------------HccCCc-c--CCCCCCCCccccCCCce---
Confidence 9999999 6899999999988642110000001111 112221 0 00000000000001000
Q ss_pred ccccCCCCCCCCCCeEeecCCceEEEeeccCcccCcceEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHhhhhh--ccc
Q 006560 178 ANDISNDLVTVTSPTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELNEIIY--QAS 255 (640)
Q Consensus 178 ~~~~~~~~~~~~~P~~~~~~~g~~v~~~~d~~f~~P~~~i~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~--~a~ 255 (640)
...... .... +....+.+.+..+..... .......++..++..+.....+ -.+
T Consensus 244 ---------------~~~~~~-------~~~~--~~~~~~~~g~~~~~~~~~-~~~~~~~l~~~llgg~~~SrLf~~~re 298 (438)
T COG0612 244 ---------------VRVNDP-------EQPD--LEQAWLALGYPGPDYDSP-DDYAALLLLNGLLGGGFSSRLFQELRE 298 (438)
T ss_pred ---------------EEecCC-------CCch--hhhhhhhccccCcCcCcc-hhhHHHHHHHHHhCCCcchHHHHHHHH
Confidence 000000 0000 112222233333222211 1223333333333321111111 112
Q ss_pred ccccEEEEEE--e---c-ceeEEEEeecC---CCHHHHHHHHHHHhccCC---CCHHHHHHHHHHHHHHHhccccCccch
Q 006560 256 VAKLETSVSI--F---S-DKLELKVYGFN---DKLPVLLSKILAIAKSFL---PSDDRFKVIKEDVVRTLKNTNMKPLSH 323 (640)
Q Consensus 256 ~ag~~~~~~~--~---~-~g~~i~~~g~s---~~l~~~l~~~~~~l~~~~---~~~~~f~~~k~~~~~~l~~~~~~p~~~ 323 (640)
..|+-+++++ . . +.+.+.+..-. +.....++.+++.+..-. +++++++..|..+...+-...++|...
T Consensus 299 ~~glay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~t~~~~~~~k~~~~~~~~~~~~s~~~~ 378 (438)
T COG0612 299 KRGLAYSVSSFSDFLSDSGLFSIYAGTAPENPEKTAELVEEILKALKKGLKGPFTEEELDAAKQLLIGLLLLSLDSPSSI 378 (438)
T ss_pred hcCceeeeccccccccccCCceEEEEecCCChhhHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhhhccCCHHHH
Confidence 3456555552 1 2 23333333332 234455555554444443 899999999999998888877888877
Q ss_pred HHHHHHHhccC-CCCCHHHHHhhhccCCHHHHHHHHHHHHhcceeEEEEeccCC
Q 006560 324 SSYLRLQVLCQ-SFYDVDEKLSILHGLSLADLMAFIPELRSQLYIEGLCHGNLS 376 (640)
Q Consensus 324 a~~~~~~~l~~-~~~~~~~~~~~l~~it~ed~~~~~~~~~~~~~~~~~v~Gni~ 376 (640)
+.......... ...+..+..+.++.+|.+|+.++.++++.+.+..++++|+..
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~a~~~~~~~~~~~~~~~p~~ 432 (438)
T COG0612 379 AELLGQYLLLGGSLITLEELLERIEAVTLEDVNAVAKKLLAPENLTIVVLGPEK 432 (438)
T ss_pred HHHHHHHHHhcCCccCHHHHHHHHHhcCHHHHHHHHHHhcCCCCcEEEEEcccc
Confidence 77776666663 456788899999999999999999999999889999999865
No 24
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.022 Score=56.82 Aligned_cols=308 Identities=12% Similarity=0.070 Sum_probs=166.8
Q ss_pred HHHHHHHHHHHHHHHhCCCchHHHHHHHHhhhcccccCCCCChHHHHHHHHHhC--CCCCccceeec-cccCccCCHHHH
Q 006560 25 FDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNL--LIYPAEHVIYG-EYMYEVWDEEMI 101 (640)
Q Consensus 25 ~~ii~~~~~~i~~l~~~~~~~~~~~e~~~~~~~~f~~~~~~~~~~~~~~la~~l--~~~~~~~vl~~-~~~~~~~d~~~i 101 (640)
+.+++.+ ++-+++-.+++|.++|.+...+..-.--- ..|.-..-+.++.. ...+.-..+.+ ...+...+.+.+
T Consensus 118 ~sm~~lL---adtV~~P~~~d~ev~~~~~~v~~E~~el~-~~Pe~lL~e~iH~Aay~~ntlg~pl~cp~~~i~~I~~~~l 193 (472)
T KOG2067|consen 118 DSMVELL---ADTVLNPKFTDQEVEEARRAVKYEIEELW-MRPEPLLTEMIHSAAYSGNTLGLPLLCPEENIDKINREVL 193 (472)
T ss_pred HHHHHHH---HHHHhcccccHHHHHHHHHhhhheccccc-cCchhhHHHHHHHHHhccCcccccccCChhhhhhhhHHHH
Confidence 6666666 67778888999999988875543322111 12332233332211 11111111222 223456678899
Q ss_pred HHHHh-ccCcCceEEEEEeCCCCCCCcCcccccccccceeecCChHHHHHhcCCCCCCCCCCCCCCC----Cc------c
Q 006560 102 KHLLG-FFMPENMRIDVVSKSFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNPPEIDVSLQLPSQN----EF------I 170 (640)
Q Consensus 102 ~~~l~-~l~p~n~~i~~~~~~~~~~~~~~~~~~~~~~Y~~~~i~~~~~~~~~~~~~~~~~~~lP~~N----~~------i 170 (640)
..+|+ +.||++|.+--++=+- +.-....+++|+- |.+ -..|+.- .| +
T Consensus 194 ~~yl~~~ytp~rmVlA~vGV~h-eelv~~~~~~~~~--------------~~s-------~~~p~i~~~~aQYtGG~~~~ 251 (472)
T KOG2067|consen 194 EEYLKYFYTPERMVLAGVGVEH-EELVEIAEKLLGD--------------LPS-------TKVPPIDESKAQYTGGELKI 251 (472)
T ss_pred HHHHHhcCChhheEeeecCCCH-HHHHHHHHHHhcc--------------CCc-------cCCCCcccchhhcccccccc
Confidence 99994 7799999866443221 0000012333321 111 0112110 01 1
Q ss_pred CCCccccccccCCCCCCCCCCeEeecCCceEEEeeccCcccCcceEEEEEEecCCCC--CCHHHHHHHHHHHHHHHHHHh
Q 006560 171 PTDFSIRANDISNDLVTVTSPTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGY--DNVKNCILTELFIHLLKDELN 248 (640)
Q Consensus 171 p~~~~l~~~~~~~~~~~~~~P~~~~~~~g~~v~~~~d~~f~~P~~~i~~~~~~~~~~--~~~~~~~~~~l~~~~l~~~l~ 248 (640)
++|+.... .-|.+-+--=|++.-=..|..| .|-+.+.+.+-+++.+ ..|.+-..++|+.+++++.--
T Consensus 252 ~~d~~~~~----------~g~EltHv~lg~Eg~~~~deD~-v~~avLq~lmGGGGSFSAGGPGKGMySrLY~~vLNry~w 320 (472)
T KOG2067|consen 252 DTDAPQVT----------GGPELTHVVLGFEGCSWNDEDF-VALAVLQMLMGGGGSFSAGGPGKGMYSRLYLNVLNRYHW 320 (472)
T ss_pred CCCCcccc----------CccceeeeeEeeccCCCCChhH-HHHHHHHHHhcCCcccCCCCCCcchHHHHHHHHHhhhHH
Confidence 11111110 0122211111233222222333 3444555554444433 235566778888888876421
Q ss_pred hhhhcccccccEEEEEEecce-eEEEEeecCCCHHHHHHHHHHHhccC--CCCHHHHHHHHHHHHHHHhcccc-CccchH
Q 006560 249 EIIYQASVAKLETSVSIFSDK-LELKVYGFNDKLPVLLSKILAIAKSF--LPSDDRFKVIKEDVVRTLKNTNM-KPLSHS 324 (640)
Q Consensus 249 ~~~~~a~~ag~~~~~~~~~~g-~~i~~~g~s~~l~~~l~~~~~~l~~~--~~~~~~f~~~k~~~~~~l~~~~~-~p~~~a 324 (640)
.|.+ ..|.-+.+..| +.+..+...+...++++++...|.+. .+++++++++|.++...+-.... .|. .+
T Consensus 321 --v~sc----tAfnhsy~DtGlfgi~~s~~P~~a~~aveli~~e~~~~~~~v~~~el~RAK~qlkS~LlMNLESR~V-~~ 393 (472)
T KOG2067|consen 321 --VYSC----TAFNHSYSDTGLFGIYASAPPQAANDAVELIAKEMINMAGGVTQEELERAKTQLKSMLLMNLESRPV-AF 393 (472)
T ss_pred --HHHh----hhhhccccCCceeEEeccCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcccccch-hH
Confidence 2222 11222222333 55666667777888888887777654 58999999999999887775554 454 35
Q ss_pred HHHHHHhcc-CCCCCHHHHHhhhccCCHHHHHHHHHHHHhcceeEEEEeccCCH
Q 006560 325 SYLRLQVLC-QSFYDVDEKLSILHGLSLADLMAFIPELRSQLYIEGLCHGNLSQ 377 (640)
Q Consensus 325 ~~~~~~~l~-~~~~~~~~~~~~l~~it~ed~~~~~~~~~~~~~~~~~v~Gni~~ 377 (640)
-+.-++++- +..-++.+.++.|+++|.+|+.++..+.+.. +..+.-.||+..
T Consensus 394 EDvGRQVL~~g~rk~p~e~~~~Ie~lt~~DI~rva~kvlt~-~p~va~~Gd~~~ 446 (472)
T KOG2067|consen 394 EDVGRQVLTTGERKPPDEFIKKIEQLTPSDISRVASKVLTG-KPSVAAFGDGTG 446 (472)
T ss_pred HHHhHHHHhccCcCCHHHHHHHHHhcCHHHHHHHHHHHhcC-CceeccCCcccC
Confidence 556666654 4456788999999999999999999999875 555667888763
No 25
>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=0.18 Score=50.56 Aligned_cols=173 Identities=11% Similarity=0.021 Sum_probs=110.6
Q ss_pred ceEEEeeccCcccCcceEEEEEEecCCCCCCHHHHHHHHHHHHHHHH-------------HHhhhhhcccccc--cEEEE
Q 006560 199 LIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKD-------------ELNEIIYQASVAK--LETSV 263 (640)
Q Consensus 199 g~~v~~~~d~~f~~P~~~i~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------------~l~~~~~~a~~ag--~~~~~ 263 (640)
|.++-+.-|+ .|.+++.+.+.+.+- ..|.. ..+-+...+++. .|.....+..++. .+|++
T Consensus 258 gsEvR~rdd~---lP~a~~AiAVEG~~w-~~pD~-~~l~van~iiG~wdr~~g~g~~~~s~La~~~~~~~l~~sfqsFnt 332 (467)
T KOG0960|consen 258 GSEVRVRDDD---LPLAHIAIAVEGVSW-AHPDY-FALMVANTIIGNWDRTEGGGRNLSSRLAQKIQQDQLCHSFQSFNT 332 (467)
T ss_pred CceeeecCCC---CchhheeeeEecCCc-CCccH-HHHHHHHHHhhhhhcccCCccCCccHHHHHHHHHHHHHHHhhhhc
Confidence 6677777665 799999999987653 33332 222222233321 1111111112221 24555
Q ss_pred EEeccee-EEEEee-cCCCHHHHHHHHHHHhccC--CCCHHHHHHHHHHHHHHHhccccCccchHHHHHHHhcc-CCCCC
Q 006560 264 SIFSDKL-ELKVYG-FNDKLPVLLSKILAIAKSF--LPSDDRFKVIKEDVVRTLKNTNMKPLSHSSYLRLQVLC-QSFYD 338 (640)
Q Consensus 264 ~~~~~g~-~i~~~g-~s~~l~~~l~~~~~~l~~~--~~~~~~f~~~k~~~~~~l~~~~~~p~~~a~~~~~~~l~-~~~~~ 338 (640)
+-...|+ .+.+-. -...++.++..++..+... .+++.+.+++|.++...+-...+...-.+.+.-+.++. +...+
T Consensus 333 ~YkDTGLwG~y~V~~~~~~iddl~~~vl~eW~rL~~~vteaEV~RAKn~Lkt~Lll~ldgttpi~ediGrqlL~~Grri~ 412 (467)
T KOG0960|consen 333 SYKDTGLWGIYFVTDNLTMIDDLIHSVLKEWMRLATSVTEAEVERAKNQLKTNLLLSLDGTTPIAEDIGRQLLTYGRRIP 412 (467)
T ss_pred ccccccceeEEEEecChhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhhcCCcCC
Confidence 4333332 223322 2234566666666555443 68999999999999988877766322337777777765 45678
Q ss_pred HHHHHhhhccCCHHHHHHHHHHHHhcceeEEEEeccCC
Q 006560 339 VDEKLSILHGLSLADLMAFIPELRSQLYIEGLCHGNLS 376 (640)
Q Consensus 339 ~~~~~~~l~~it~ed~~~~~~~~~~~~~~~~~v~Gni~ 376 (640)
..+..+.|++||.++++++..+++-...+-+..+|.+.
T Consensus 413 l~El~~rId~vt~~~Vr~va~k~iyd~~iAia~vG~ie 450 (467)
T KOG0960|consen 413 LAELEARIDAVTAKDVREVASKYIYDKDIAIAAVGPIE 450 (467)
T ss_pred hHHHHHHHhhccHHHHHHHHHHHhhcCCcceeeecccc
Confidence 88999999999999999999999988899999999875
No 26
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. These metallopeptidases belong to MEROPS peptidase family M16 (clan ME). They include proteins, which are classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. The peptidases in this group of sequences include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The mitochondrial processing peptidase consists of two structurally related domains. One is the active peptidase whereas the other, the C-terminal region, is inactive. The two domains hold the substrate like a clamp [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B 1SQX_B 1NU1_B 1L0L_B 2FYU_B ....
Probab=95.79 E-value=0.24 Score=45.23 Aligned_cols=42 Identities=14% Similarity=0.092 Sum_probs=28.9
Q ss_pred ceeEEEEeecCCCHHHHHHHHHHHhcc---CCCCHHHHHHHHHHH
Q 006560 268 DKLELKVYGFNDKLPVLLSKILAIAKS---FLPSDDRFKVIKEDV 309 (640)
Q Consensus 268 ~g~~i~~~g~s~~l~~~l~~~~~~l~~---~~~~~~~f~~~k~~~ 309 (640)
+-+.+.+.+-.+++..+++.+.+.+.. ..+++++|+++|+++
T Consensus 140 ~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~s~~el~~~k~~L 184 (184)
T PF05193_consen 140 GLFSISFQVTPENLDEAIEAILQELKRLREGGISEEELERAKNQL 184 (184)
T ss_dssp EEEEEEEEEEGGGHHHHHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred eEEEEEEEcCcccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 346667777766777766666655543 469999999999864
No 27
>PF08367 M16C_assoc: Peptidase M16C associated; InterPro: IPR013578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain appears in eukaryotes as well as bacteria and tends to be found near the C terminus of metalloproteases and related sequences belonging to MEROPS peptidase family M16 (subfamily M16C, clan ME). These include: eupitrilysin, falcilysin, PreP peptidase, CYM1 peptidase and subfamily M16C non-peptidase homologues.; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 2FGE_B 3S5I_A 3S5H_A 3S5M_A 3S5K_A.
Probab=92.02 E-value=0.43 Score=46.56 Aligned_cols=123 Identities=13% Similarity=0.123 Sum_probs=71.8
Q ss_pred CCCeEeecCCceEEEeeccCcccCcceEEEEEEecCCCCCCHHHHHHHHHHHHHHHH-HHhhhhh-------cccccccE
Q 006560 189 TSPTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKD-ELNEIIY-------QASVAKLE 260 (640)
Q Consensus 189 ~~P~~~~~~~g~~v~~~~d~~f~~P~~~i~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~l~~~~~-------~a~~ag~~ 260 (640)
..|......+|+.+++.+-.+ .-.+++.+.|+.+... ........|++.++.. +.....| .....|++
T Consensus 68 ~~~~~~~~~~~~~v~~~~~~T--nGI~Y~~l~fdl~~l~--~e~l~yl~Ll~~ll~~lgT~~~sy~el~~~i~~~tGGis 143 (248)
T PF08367_consen 68 KIPLEVEKLGGIPVLFHEQPT--NGIVYVRLYFDLSDLP--EEDLPYLPLLTDLLGELGTKNYSYEELSNEIDLYTGGIS 143 (248)
T ss_dssp ----EECCCTTCEEEEEE-----TTEEEEEEEEE-TTS---CCCHCCHHHHHHHCCCS-BSSS-HHHHHHHHHHHSSEEE
T ss_pred CCCceeeecCCccEEEEEcCC--CCeEEEEEEecCCCCC--HHHHHhHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCeE
Confidence 345556666789998886554 3468888888876443 2334556677777642 1111111 22345777
Q ss_pred EEEEEe---------cceeEEEEeecCCCHHHHHHHHHHHhccCCCCHH-HHHHHHHHHHHHHhc
Q 006560 261 TSVSIF---------SDKLELKVYGFNDKLPVLLSKILAIAKSFLPSDD-RFKVIKEDVVRTLKN 315 (640)
Q Consensus 261 ~~~~~~---------~~g~~i~~~g~s~~l~~~l~~~~~~l~~~~~~~~-~f~~~k~~~~~~l~~ 315 (640)
+++... ..++.++..+..++++.+++++.+.|.++.|++. .+..+..+....+.+
T Consensus 144 ~~~~~~~~~~~~~~~~~~l~is~k~L~~~~~~~~~ll~eil~~~~f~d~~rl~~ll~~~~s~~~~ 208 (248)
T PF08367_consen 144 FSIEVYTDYDDDDKYRPYLVISAKCLDEKLDEAFELLSEILTETDFDDKERLKELLKELKSDMES 208 (248)
T ss_dssp EEEEEEEEECTECCCEEEEEEEEEEEGGGHHHHHHHHHHHHHCB-TT-HHHHHHHHHHHHHHHHH
T ss_pred EEeeeccCCCCccceeEEEEEEEEeHhhhHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHH
Confidence 666433 2358888899999999999999999999999875 344444444444443
No 28
>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification. ; InterPro: IPR011765 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. The majority of the sequences in this entry are metallopeptidases and non-peptidase homologs belong to MEROPS peptidase family M16 (clan ME), subfamilies M16A, M16B and M16C; they include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The proteins classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3P7L_A 3P7O_A 3TUV_A 3GO9_A 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B ....
Probab=75.80 E-value=47 Score=29.03 Aligned_cols=40 Identities=15% Similarity=0.170 Sum_probs=31.1
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcc
Q 006560 520 EGLDDESFENYRSGLMAKLLEKDPSLTYESNRFWNQITDK 559 (640)
Q Consensus 520 ~~~se~ef~~~k~~l~~~~~~~~~sl~~~~~~~w~~i~~~ 559 (640)
-.+++++|++.|..++..+.....+....+...+.....+
T Consensus 98 P~f~~~~~~~~r~~~~~ei~~~~~~~~~~~~~~l~~~~f~ 137 (149)
T PF00675_consen 98 PSFDEEEFEREREQILQEIEEIKENPQELAFEKLHSAAFR 137 (149)
T ss_dssp BGGCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHhc
Confidence 4689999999999999988877777666666666655544
No 29
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=60.77 E-value=15 Score=22.57 Aligned_cols=16 Identities=19% Similarity=0.524 Sum_probs=14.0
Q ss_pred cCCCHHHHHHHHHHHH
Q 006560 520 EGLDDESFENYRSGLM 535 (640)
Q Consensus 520 ~~~se~ef~~~k~~l~ 535 (640)
+.+|++||++.|+.++
T Consensus 15 G~IseeEy~~~k~~ll 30 (31)
T PF09851_consen 15 GEISEEEYEQKKARLL 30 (31)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 5689999999999875
No 30
>COG1761 RPB11 DNA-directed RNA polymerase, subunit L [Transcription]
Probab=40.18 E-value=1.1e+02 Score=24.83 Aligned_cols=64 Identities=19% Similarity=0.293 Sum_probs=32.2
Q ss_pred hHHHHHhhcccceEEEeeeeeeCceeeEEEEEEcCCCCh-hhHHHHHHHHHHHHHHHhcCCCHHHHHH
Q 006560 463 FFNQLRTKEQLGYVVECSPRVTYRVFGFCFCIQSSKYNP-IYLQERIDNFISGLDELLEGLDDESFEN 529 (640)
Q Consensus 463 lf~~LR~k~~LgY~v~s~~~~~~~~~~~~~~vqs~~~~~-~~~~~~i~~fl~~~~~~l~~~se~ef~~ 529 (640)
|-..|++..+.-+..+.-..+..+.+-+++.+.++ ++| +.+.++++..++........+ ++|++
T Consensus 32 L~~~L~~d~~V~~a~Y~i~HP~~~~~~i~Ikt~~~-~dp~~aL~~A~~~i~~~~~~l~~~~--~~~e~ 96 (99)
T COG1761 32 LREELLKDEDVEFAAYSIPHPLIDNPKIRIKTKGG-VDPKEALKRAARKILKDLEELLDQF--EEFEK 96 (99)
T ss_pred HHHHHhCCCCeeEEEEeCCCCCCCCceEEEEECCC-CCHHHHHHHHHHHHHHHHHHHHHHH--HHHHh
Confidence 34555666665554444444555555454444444 344 345555666665554444444 44443
No 31
>PF05120 GvpG: Gas vesicle protein G ; InterPro: IPR007804 Gas vesicles are intracellular, protein-coated, and hollow organelles found in cyanobacteria and halophilic archaea. They are permeable to ambient gases by diffusion and provide buoyancy, enabling cells to move upwards in water to access oxygen and/or light. Proteins containing this family are involved in the formation of gas vesicles [].
Probab=30.20 E-value=1.6e+02 Score=22.82 Aligned_cols=40 Identities=23% Similarity=0.507 Sum_probs=27.3
Q ss_pred CChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC
Q 006560 499 YNPIYLQERIDNFISGLDELLEGLDDESFENYRSGLMAKLLE 540 (640)
Q Consensus 499 ~~~~~~~~~i~~fl~~~~~~l~~~se~ef~~~k~~l~~~~~~ 540 (640)
++|..+...+.+.-..+. .+.+|+++|++....++..+..
T Consensus 28 ~Dp~~i~~~L~~L~~~~e--~GEIseeEf~~~E~eLL~rL~~ 67 (79)
T PF05120_consen 28 YDPAAIRRELAELQEALE--AGEISEEEFERREDELLDRLEE 67 (79)
T ss_pred cCHHHHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHHHH
Confidence 466665555555443332 2789999999999998877653
No 32
>PHA03081 putative metalloprotease; Provisional
Probab=29.89 E-value=7.2e+02 Score=26.62 Aligned_cols=184 Identities=14% Similarity=0.109 Sum_probs=91.6
Q ss_pred eecCCceEEEeeccCcccCcceEEEEEEecCCCCCCH-HHHHHHHHHHHHHHHHHhhhhhcccccccEEE-EEEecceeE
Q 006560 194 IIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNV-KNCILTELFIHLLKDELNEIIYQASVAKLETS-VSIFSDKLE 271 (640)
Q Consensus 194 ~~~~~g~~v~~~~d~~f~~P~~~i~~~~~~~~~~~~~-~~~~~~~l~~~~l~~~l~~~~~~a~~ag~~~~-~~~~~~g~~ 271 (640)
+..+||++++..+.-. -.|.+-+..-+...+. .-.+++.|+..++-.- .....+|..+.+ -+.+.=.-
T Consensus 2 i~~~ngvr~f~~~~m~-----kdiy~gi~~fgfe~di~~~lg~ahllehili~f----d~~~f~anast~r~ymsfwc~- 71 (595)
T PHA03081 2 IVLSNGVRIFINPSMK-----KDIYLGISNFGFENDIGEILGIAHLLEHILISF----DSSKFVANASTARSYMSFWCK- 71 (595)
T ss_pred eEecCceEEEecCccc-----cceEEeecccccccchHHHHhHHHHHHHHeeec----chHHhcccchhhhhhHhHhhH-
Confidence 4678999999998553 2555555444444443 3467888888776321 011112211100 00000001
Q ss_pred EEEeecCCCHHHHHHHHHHHhccCCCCHHHHHHHH-HHHHHHHhcccc--CccchHHHHHHHhccCCCCCHHHHHhhhcc
Q 006560 272 LKVYGFNDKLPVLLSKILAIAKSFLPSDDRFKVIK-EDVVRTLKNTNM--KPLSHSSYLRLQVLCQSFYDVDEKLSILHG 348 (640)
Q Consensus 272 i~~~g~s~~l~~~l~~~~~~l~~~~~~~~~f~~~k-~~~~~~l~~~~~--~p~~~a~~~~~~~l~~~~~~~~~~~~~l~~ 348 (640)
++.|-+ ...+++.+..-+....--...|...+ +..+++++|... +-..+..+++.-+-.++-| ..|++..|+.
T Consensus 72 -sirg~~--y~DAvrtliSWFF~~~~Lr~~F~~~~ik~~ikELENEYYFRnEvfHCmDvLTfL~gGDLY-NGGRi~ML~~ 147 (595)
T PHA03081 72 -SIRGRS--YIDAIRTLISWFFDNGKLKDNFSLSKIRNHIKELENEYYFRNEVFHCMDVLTFLGGGDLY-NGGRIDMLDN 147 (595)
T ss_pred -hhcCCc--hHHHHHHHHHHhccCCccccccchhhHHHHHHHHhhhhhhhhhhHHHHHHHHHhcCCccc-CCchHHHHhh
Confidence 122222 23455555554455543344454433 334556666542 4455677776554333322 2234444543
Q ss_pred CCHHHHHHHHHHHHhc---ceeEEEEeccCCHHHHHHHHHHHHhhcCCCC
Q 006560 349 LSLADLMAFIPELRSQ---LYIEGLCHGNLSQEEAIHISNIFKSIFSVQP 395 (640)
Q Consensus 349 it~ed~~~~~~~~~~~---~~~~~~v~Gni~~~~~~~l~~~~~~~l~~~~ 395 (640)
+++++......... -++++ ++-.+++. +..++++.++.+|.-|
T Consensus 148 --l~~i~~~L~~RM~~I~GpniVI-FVk~ln~~-~l~lL~~TFGtLP~~P 193 (595)
T PHA03081 148 --LNDVRDMLSNRMHRISGPNIVI-FVKELNPN-TLSLLNNTFGTLPSCP 193 (595)
T ss_pred --hHHHHHHHHHHHHhhcCCcEEE-EEeccCHH-HHHHHHHhcCCCCCCc
Confidence 34555555444332 35544 46667654 6778888888888654
No 33
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=28.49 E-value=64 Score=29.22 Aligned_cols=40 Identities=23% Similarity=0.280 Sum_probs=31.7
Q ss_pred hccCCHHHHHHHHHHHHhc-ceeEEEEeccCCHHHHHHHHH
Q 006560 346 LHGLSLADLMAFIPELRSQ-LYIEGLCHGNLSQEEAIHISN 385 (640)
Q Consensus 346 l~~it~ed~~~~~~~~~~~-~~~~~~v~Gni~~~~~~~l~~ 385 (640)
|++++.+++++..+.+... .++.+.++|+|+.+.+.++.+
T Consensus 106 lD~~~~~~~~~~v~~l~~~~~~v~ie~SGGI~~~ni~~ya~ 146 (169)
T PF01729_consen 106 LDNMSPEDLKEAVEELRELNPRVKIEASGGITLENIAEYAK 146 (169)
T ss_dssp EES-CHHHHHHHHHHHHHHTTTSEEEEESSSSTTTHHHHHH
T ss_pred ecCcCHHHHHHHHHHHhhcCCcEEEEEECCCCHHHHHHHHh
Confidence 4678999999999876533 469999999999999888754
No 34
>cd08805 Death_ank1 Death domain of Ankyrin-1. Death Domain (DD) of the human protein ankyrin-1 (ANK-1) and related proteins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. ANK-1, also called ankyrin-R (for restricted), is found in brain, muscle, and erythrocytes and is thought to function in linking integral membrane proteins to the underlying cytoskeleton. It plays a critical nonredundant role in erythroid development and is associated with hereditary spherocytosis (HS), a common disorder of the red cell membrane. The small alternatively-spliced variant, sANK-1, found in striated muscle and concentrated in the sarcoplasmic reticulum (SR) binds obscurin and titin, which facilitates the anchoring of the network SR to the contractile apparatus. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common featur
Probab=25.71 E-value=3.3e+02 Score=21.35 Aligned_cols=55 Identities=16% Similarity=0.187 Sum_probs=35.8
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCCChhHHHHH---HHHHHhccccccccchHhHHHHhcCCHHHHHHHH
Q 006560 521 GLDDESFENYRSGLMAKLLEKDPSLTYESNR---FWNQITDKRYMFDQSQKEAEDLKSIKKNDVISWY 585 (640)
Q Consensus 521 ~~se~ef~~~k~~l~~~~~~~~~sl~~~~~~---~w~~i~~~~~~f~~~~~~~~~l~~vT~~dv~~~~ 585 (640)
++++.+++.++..- +.++.+++.. .|..--..+ -..+..+.+|+++...||....
T Consensus 26 ~vs~~dI~~I~~e~-------p~~l~~Q~~~~L~~W~~r~g~~---At~~~L~~AL~~i~R~div~~~ 83 (84)
T cd08805 26 QFSVEDINRIRVEN-------PNSLLEQSTALLNLWVDREGEN---AKMSPLYPALYSIDRLTIVNML 83 (84)
T ss_pred CCCHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHhcCcc---chHHHHHHHHHHCChHHHHHhh
Confidence 89999999988743 2333344443 455443322 2335678999999999998653
No 35
>PF09568 RE_MjaI: MjaI restriction endonuclease; InterPro: IPR019068 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry includes the MjaI (recognises CTAG but cleavage site unknown) restriction endonuclease. ; GO: 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system
Probab=24.26 E-value=1.8e+02 Score=26.24 Aligned_cols=41 Identities=22% Similarity=0.427 Sum_probs=31.4
Q ss_pred CCCChhHHHHHHHHHHhccccccccchHhHHHHhcCCHHHHHHHHHHHccc
Q 006560 541 KDPSLTYESNRFWNQITDKRYMFDQSQKEAEDLKSIKKNDVISWYKTYLQQ 591 (640)
Q Consensus 541 ~~~sl~~~~~~~w~~i~~~~~~f~~~~~~~~~l~~vT~~dv~~~~~~~l~~ 591 (640)
.++.+......+|..|. +..+++++||.+|+.++.++.+-.
T Consensus 45 ~~e~i~~a~~ki~~~i~----------e~~~a~~~it~ed~~~wv~dLvi~ 85 (170)
T PF09568_consen 45 YPEAIEEATDKIYVMIT----------EVKEALNKITEEDCINWVKDLVIN 85 (170)
T ss_pred ChHHHHHHHHHHHHHHH----------HHHHHHHhCCHHHHHHHHHHheee
Confidence 55666667777776663 456789999999999999987764
No 36
>PRK11512 DNA-binding transcriptional repressor MarR; Provisional
Probab=20.55 E-value=2.7e+02 Score=24.12 Aligned_cols=45 Identities=16% Similarity=-0.039 Sum_probs=27.3
Q ss_pred EEEEEcchhhhhcHHHHHHHHHHHHHHHHhCCCchHHHHHHHHhh
Q 006560 11 VMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIG 55 (640)
Q Consensus 11 ~i~i~Lt~~G~~~~~~ii~~~~~~i~~l~~~~~~~~~~~e~~~~~ 55 (640)
...+.||++|..-++++...+-..+..---.++++...+++..+.
T Consensus 95 ~~~l~LT~~G~~~~~~~~~~~~~~~~~~l~~~ls~ee~~~l~~~L 139 (144)
T PRK11512 95 GVLVKLTTSGAAICEQCHQLVGQDLHQELTKNLTADEVATLEHLL 139 (144)
T ss_pred eeEeEEChhHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 356899999986666655554433332233566766666665554
No 37
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=20.34 E-value=2.1e+02 Score=28.33 Aligned_cols=40 Identities=13% Similarity=0.236 Sum_probs=31.7
Q ss_pred hccCCHHHHHHHHHHHHh---cceeEEEEeccCCHHHHHHHHH
Q 006560 346 LHGLSLADLMAFIPELRS---QLYIEGLCHGNLSQEEAIHISN 385 (640)
Q Consensus 346 l~~it~ed~~~~~~~~~~---~~~~~~~v~Gni~~~~~~~l~~ 385 (640)
|++++.+++++....+-. +.++.+.++|+|+.+.+.++.+
T Consensus 208 LDn~~~e~l~~~v~~l~~~~~~~~~~leaSGGI~~~ni~~yA~ 250 (278)
T PRK08385 208 LDNMTPEEIREVIEALKREGLRERVKIEVSGGITPENIEEYAK 250 (278)
T ss_pred ECCCCHHHHHHHHHHHHhcCcCCCEEEEEECCCCHHHHHHHHH
Confidence 567888899888876533 2478999999999999888764
No 38
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=20.26 E-value=89 Score=19.11 Aligned_cols=18 Identities=11% Similarity=0.291 Sum_probs=11.4
Q ss_pred HHHHh-cCCHHHHHHHHHH
Q 006560 570 AEDLK-SIKKNDVISWYKT 587 (640)
Q Consensus 570 ~~~l~-~vT~~dv~~~~~~ 587 (640)
.++.+ +||++||.+|++.
T Consensus 10 ~eA~~~Gls~eeir~FL~~ 28 (30)
T PF08671_consen 10 KEAKESGLSKEEIREFLEF 28 (30)
T ss_dssp HHHHHTT--HHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHh
Confidence 34444 6999999999863
Done!