Query 006560
Match_columns 640
No_of_seqs 191 out of 1873
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 02:50:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006560.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006560hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1q2l_A Protease III; hydrolase 100.0 3.5E-67 1.2E-71 613.4 65.9 612 4-638 322-936 (939)
2 3cww_A Insulysin, insulin-degr 100.0 2E-64 6.8E-69 593.0 71.2 622 5-640 339-980 (990)
3 3gwb_A Peptidase M16 inactive 100.0 3.4E-37 1.2E-41 328.7 34.8 399 191-610 14-424 (434)
4 3amj_B Zinc peptidase inactive 100.0 1.2E-35 4E-40 315.8 32.6 397 191-611 4-418 (424)
5 3cx5_A Cytochrome B-C1 complex 100.0 1.3E-34 4.3E-39 308.5 36.3 391 192-609 2-415 (431)
6 3eoq_A Putative zinc protease; 100.0 2.6E-34 8.9E-39 303.4 38.4 392 193-607 4-404 (406)
7 3hdi_A Processing protease; CA 100.0 1.2E-34 4E-39 307.7 33.8 398 192-613 3-410 (421)
8 1pp9_B Ubiquinol-cytochrome C 100.0 2.7E-34 9.2E-39 306.7 36.6 390 191-611 24-434 (439)
9 1hr6_A Alpha-MPP, mitochondria 100.0 6.1E-34 2.1E-38 306.7 35.0 401 191-610 6-440 (475)
10 3d3y_A Uncharacterized protein 100.0 2.8E-33 9.7E-38 297.5 38.5 371 194-590 6-412 (425)
11 2fge_A Atprep2;, zinc metallop 100.0 9.4E-34 3.2E-38 332.4 32.0 559 7-613 358-981 (995)
12 3ami_A Zinc peptidase; alpha/b 100.0 1.1E-32 3.8E-37 294.6 36.5 399 191-611 7-426 (445)
13 1hr6_B Beta-MPP, mitochondrial 100.0 5.1E-32 1.8E-36 289.4 36.4 398 191-610 7-431 (443)
14 1pp9_A Ubiquinol-cytochrome C 100.0 2.5E-31 8.6E-36 284.2 36.7 398 191-611 14-432 (446)
15 3go9_A Insulinase family prote 100.0 6.8E-30 2.3E-34 275.3 31.3 397 191-610 26-450 (492)
16 1q2l_A Protease III; hydrolase 99.9 2.1E-25 7.1E-30 260.5 29.5 402 192-609 22-441 (939)
17 3s5m_A Falcilysin; M16 metallo 99.9 1.2E-22 4E-27 235.3 30.5 402 191-607 87-588 (1193)
18 3cww_A Insulysin, insulin-degr 99.9 2.1E-22 7.1E-27 236.3 28.3 399 191-607 35-455 (990)
19 2fge_A Atprep2;, zinc metallop 99.9 2.4E-22 8.3E-27 235.6 27.5 392 193-606 40-484 (995)
20 3s5m_A Falcilysin; M16 metallo 99.9 2.2E-22 7.6E-27 233.0 24.3 580 5-610 453-1176(1193)
21 3cx5_B Cytochrome B-C1 complex 99.9 6.1E-22 2.1E-26 204.5 17.9 331 212-611 10-347 (352)
22 3ih6_A Putative zinc protease; 99.6 2.2E-15 7.4E-20 141.4 15.3 169 427-606 23-193 (197)
23 3gwb_A Peptidase M16 inactive 98.6 8.9E-06 3.1E-10 85.5 23.6 298 24-376 108-422 (434)
24 3hdi_A Processing protease; CA 98.5 1.2E-05 4E-10 84.3 22.8 296 23-376 94-405 (421)
25 1hr6_B Beta-MPP, mitochondrial 98.5 5.9E-05 2E-09 79.4 27.4 314 10-376 89-429 (443)
26 3cx5_A Cytochrome B-C1 complex 98.5 6.4E-05 2.2E-09 78.7 26.9 305 11-376 77-414 (431)
27 3ami_A Zinc peptidase; alpha/b 98.4 3.1E-05 1E-09 81.7 24.3 304 23-376 99-423 (445)
28 3amj_B Zinc peptidase inactive 98.4 2.1E-05 7.2E-10 82.3 22.3 297 25-377 104-416 (424)
29 1pp9_B Ubiquinol-cytochrome C 98.4 7.9E-05 2.7E-09 78.3 26.7 302 11-375 106-430 (439)
30 3eoq_A Putative zinc protease; 98.4 1.8E-05 6.3E-10 82.3 20.8 296 23-376 94-405 (406)
31 1pp9_A Ubiquinol-cytochrome C 98.4 0.00012 4.1E-09 77.1 26.9 311 11-376 96-429 (446)
32 1hr6_A Alpha-MPP, mitochondria 98.3 0.00011 3.7E-09 78.2 25.5 300 23-375 97-437 (475)
33 3ih6_A Putative zinc protease; 98.3 1.3E-05 4.4E-10 74.3 15.6 157 213-374 23-193 (197)
34 3go9_A Insulinase family prote 98.1 0.0015 5.3E-08 69.5 29.1 326 12-392 116-466 (492)
35 3d3y_A Uncharacterized protein 98.0 0.00069 2.4E-08 70.6 22.5 159 213-374 253-421 (425)
36 3cx5_B Cytochrome B-C1 complex 96.0 0.058 2E-06 54.3 12.9 94 503-605 81-175 (352)
No 1
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=100.00 E-value=3.5e-67 Score=613.38 Aligned_cols=612 Identities=21% Similarity=0.356 Sum_probs=537.2
Q ss_pred CCcceEEEEEEEcchhhhhcHHHHHHHHHHHHHHHHhCCCchHHHHHHHHhhhcccccCCCCChHHHHHHHHHhCCCCCc
Q 006560 4 SSIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLLIYPA 83 (640)
Q Consensus 4 ~~~~~~f~i~i~Lt~~G~~~~~~ii~~~~~~i~~l~~~~~~~~~~~e~~~~~~~~f~~~~~~~~~~~~~~la~~l~~~~~ 83 (640)
...++.|.|.+.++++|..+++++++.++++|+.+++.|++++++++.++.....|.++....+.+++..++.+|..+++
T Consensus 322 ~~~~g~f~i~~~~~~~~~~~~~~~~~~i~~~l~~l~~~g~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 401 (939)
T 1q2l_A 322 NGNSGVLAISASLTDKGLANRDQVVAAIFSYLNLLREKGIDKQYFDELANVLDIDFRYPSITRDMDYVEWLADTMIRVPV 401 (939)
T ss_dssp TSSEEEEEEEEEECHHHHHTHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHSCCCCCSHHHHHHHHHHHTTSCG
T ss_pred CCCceEEEEEEEEChhhhhhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcccccCCCChHHHHHHHHHHhhcCCH
Confidence 35679999999999999999999999999999999999999999999999999999998877788899999999988888
Q ss_pred cceeeccccCccCCHHHHHHHHhccCcCceEEEEEeCCCCCCCcCcccccccccceeecCChHHHHHhcCCCCCCCCCCC
Q 006560 84 EHVIYGEYMYEVWDEEMIKHLLGFFMPENMRIDVVSKSFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNPPEIDVSLQL 163 (640)
Q Consensus 84 ~~vl~~~~~~~~~d~~~i~~~l~~l~p~n~~i~~~~~~~~~~~~~~~~~~~~~~Y~~~~i~~~~~~~~~~~~~~~~~~~l 163 (640)
++++.+...+..++++++++++++|+|+|+++++++|+. .....++||+++|.+.+++++.++.|.. ......+.+
T Consensus 402 ~~~~~~~~~i~~vt~~~i~~~~~~l~~~~~~~~~~~p~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 477 (939)
T 1q2l_A 402 EHTLDAVNIADRYDAKAVKERLAMMTPQNARIWYISPKE---PHNKTAYFVDAPYQVDKISAQTFADWQK-KAADIALSL 477 (939)
T ss_dssp GGTTTTTTCCCCCCHHHHHHHHHHCSGGGCEEEEECTTC---CCCEECTTTCCEEEEEECCHHHHHHHHH-HHHTCCCCC
T ss_pred HHHhcCchhhhccCHHHHHHHHHhcCHHHcEEEEEcCCC---CCCcccceeCCeeeeeeCCHHHHHHHhc-cCccccccC
Confidence 899888889999999999999999999999999999865 3456799999999999999999999976 233457889
Q ss_pred CCCCCccCCCccccccccCCCCCCCCCCeEeecCCceEEEeeccCcccCc-ceEEEEEEecCCCCCCHHHHHHHHHHHHH
Q 006560 164 PSQNEFIPTDFSIRANDISNDLVTVTSPTCIIDEPLIRFWYKLDNTFKLP-RANTYFRINLKGGYDNVKNCILTELFIHL 242 (640)
Q Consensus 164 P~~N~~ip~~~~l~~~~~~~~~~~~~~P~~~~~~~g~~v~~~~d~~f~~P-~~~i~~~~~~~~~~~~~~~~~~~~l~~~~ 242 (640)
|.+|+|+|+++++.... .....|..+..+||++||+++++.|++| ++.|.+.+.+|....++++.+++.|+..+
T Consensus 478 p~~n~~~~~~~~~~~~~-----~~~~~p~~~~l~ng~~v~~~~~~~f~~pp~~~i~l~~~~~~~~~~~~~~~~~~l~~~l 552 (939)
T 1q2l_A 478 PELNPYIPDDFSLIKSE-----KKYDHPELIVDESNLRVVYAPSRYFASEPKADVSLILRNPKAMDSARNQVMFALNDYL 552 (939)
T ss_dssp CCCCTTCCCCCCCCCCS-----SCCSSCEEEEEETTEEEEEECCSSCTTSSEEEEEEEEECGGGGSSHHHHHHHHHHHHH
T ss_pred CCCCcCCCcCcccccCc-----CCCCCCEEEEECCCceEeecCCCccCCCCcEEEEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 99999999999876432 2345689999999999999999999886 99999999999988889999999999999
Q ss_pred HHHHHhhhhhcccccccEEEEEEecceeEEEEeecCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcccc-Ccc
Q 006560 243 LKDELNEIIYQASVAKLETSVSIFSDKLELKVYGFNDKLPVLLSKILAIAKSFLPSDDRFKVIKEDVVRTLKNTNM-KPL 321 (640)
Q Consensus 243 l~~~l~~~~~~a~~ag~~~~~~~~~~g~~i~~~g~s~~l~~~l~~~~~~l~~~~~~~~~f~~~k~~~~~~l~~~~~-~p~ 321 (640)
+..++.+..|.+.++|++++++. .+|+.++++|++++++.+++++.+.+.+|.++++.|+++|+++++.+++... +|.
T Consensus 553 l~~g~~~~~~~~~l~G~~~~~~~-~~g~~~~~~g~~~~l~~~l~ll~~~l~~p~~~~~~f~~~k~~~~~~l~~~~~~~p~ 631 (939)
T 1q2l_A 553 AGLALDQLSNQASVGGISFSTNA-NNGLMVNANGYTQRLPQLFQALLEGYFSYTATEDQLEQAKSWYNQMMDSAEKGKAF 631 (939)
T ss_dssp HHHHHHHHHHHHHHTTEEEEEEE-SSEEEEEEEEESSSHHHHHHHHHHHHHHCCCCSHHHHHHHHHHHHHHHHHSCSCHH
T ss_pred HHHHHHHHhhHHHHcCcEEEEee-CCcEEEEEEcccHhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhhhcChH
Confidence 99999999999999999999999 9999999999999999999999999999999999999999999999999854 799
Q ss_pred chHHHHHHHhccCCCCCHHHHHhhhccCCHHHHHHHHHHHHhcceeEEEEeccCCHHHHHHHHHHHHhhcCCCCCCcccc
Q 006560 322 SHSSYLRLQVLCQSFYDVDEKLSILHGLSLADLMAFIPELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSVQPLPIEMR 401 (640)
Q Consensus 322 ~~a~~~~~~~l~~~~~~~~~~~~~l~~it~ed~~~~~~~~~~~~~~~~~v~Gni~~~~~~~l~~~~~~~l~~~~~~~~~~ 401 (640)
.++.+.+..+++++.|+..+.++.|+++|.+|+.+|+++++.+.+++++|+||++.+++.++++.+++.++.++.+.
T Consensus 632 ~~a~~~l~~~l~~~~~~~~~~~~~l~~it~~~l~~f~~~~~~~~~~~~~vvGn~~~~~~~~l~~~~~~~l~~~~~~~--- 708 (939)
T 1q2l_A 632 EQAIMPAQMLSQVPYFSRDERRKILPSITLKEVLAYRDALKSGARPEFMVIGNMTEAQATTLARDVQKQLGADGSEW--- 708 (939)
T ss_dssp HHHHHHHHHTTSSSCCCHHHHHHHGGGCCHHHHHHHHHHHHTTCEEEEEEEESCCHHHHHHHHHHHHHHHTCCCSCC---
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHhcCCHHHHHHHHHHHHhhheEEEEEEcCCCHHHHHHHHHHHHHHHccCCccc---
Confidence 88999999999887788889999999999999999999999999999999999999999999999888887543211
Q ss_pred ccceEEEcCCCCeEEEEeecCCCCCCCeEE-EEEEecccccCcchHHHHHHHHHHHHHhchhhHHHHHhhcccceEEEee
Q 006560 402 HQECVICLPSGANLVRNVSVKNKCETNSVI-ELYFQIEQEKGMELTRLKALIDLFDEILEEPFFNQLRTKEQLGYVVECS 480 (640)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~~~~~ll~~~l~s~lf~~LR~k~~LgY~v~s~ 480 (640)
........+.+....+... .+ ..++++ .++++ .|..+.+..+++.+|+++++++||++|||++||||+|+++
T Consensus 709 ~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~----~~~~~~~~~~~~~lL~~~~~s~lf~~LRek~gl~Y~v~s~ 781 (939)
T 1q2l_A 709 CRNKDVVVDKKQSVIFEKA--GN-STDSALAAVFVP----TGYDEYTSSAYSSLLGQIVQPWFYNQLRTEEQLGYAVFAF 781 (939)
T ss_dssp CCCEEECCCSCEEEEEEEC--CS-SSCEEEEEEEEC----SSCCHHHHHHHHHHHHHHHHHHHTHHHHTSCCSSSCEEEE
T ss_pred cccceEEeCCCceEEEecC--CC-CCCceeEEEEEe----cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCceeeee
Confidence 1112222233333222222 22 244555 67788 7777788889999999999999999999999999999999
Q ss_pred eeeeCceeeEEEEEEcCCCChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhccc
Q 006560 481 PRVTYRVFGFCFCIQSSKYNPIYLQERIDNFISGLDELLEGLDDESFENYRSGLMAKLLEKDPSLTYESNRFWNQITDKR 560 (640)
Q Consensus 481 ~~~~~~~~~~~~~vqs~~~~~~~~~~~i~~fl~~~~~~l~~~se~ef~~~k~~l~~~~~~~~~sl~~~~~~~w~~i~~~~ 560 (640)
.....+..|+.|+||++.++|+.+.++|+.|++++.+.++++|++||+++|+++++++....+|+..+++++|..+..++
T Consensus 782 ~~~~~~~~g~~~~i~s~~~~p~~~~~~i~~~~~~~~~~~~~~t~~el~~~k~~l~~~~~~~~~s~~~~~~~~w~~i~~~~ 861 (939)
T 1q2l_A 782 PMSVGRQWGMGFLLQSNDKQPSFLWERYKAFFPTAEAKLRAMKPDEFAQIQQAVITQMLQAPQTLGEEASKLSKDFDRGN 861 (939)
T ss_dssp EEEETTEEEEEEEEEESSSCHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHTC
T ss_pred EeecCCeeEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Confidence 88777888888889996679999999999999999887788999999999999999999999999999999999999888
Q ss_pred cccccchHhHHHHhcCCHHHHHHHHHHHcccCCCCcceEEEEEecCCCCcccccccCCCceeecChHHHhccCccccc
Q 006560 561 YMFDQSQKEAEDLKSIKKNDVISWYKTYLQQWSPKCRRLAVRVWGCNTNIKESEKHSKSALVIKDLTAFKLSSEFYQS 638 (640)
Q Consensus 561 ~~f~~~~~~~~~l~~vT~~dv~~~~~~~l~~~~~~~~~l~i~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (640)
+.|++.+++++.|++||++||++++++++.+ +++.+++|+|+|+.+...+...+ .+...|+|+.+||+....||.
T Consensus 862 ~~~d~~~~~~~~i~~vT~~dv~~~a~~~l~~--~~~~~l~v~v~G~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 936 (939)
T 1q2l_A 862 MRFDSRDKIVAQIKLLTPQKLADFFHQAVVE--PQGMAILSQISGSQNGKAEYVHP-EGWKVWENVSALQQTMPLMSE 936 (939)
T ss_dssp TTCCHHHHHHHHHHTCCHHHHHHHHHHHTTS--CSSEEEEEEECCSSHHHHCCCCC-TTCEECSCHHHHHTTSCEEEC
T ss_pred CCCChHHHHHHHHhcCCHHHHHHHHHHHhcC--CCCCEEEEEEecCCCCccccccc-CCCcEeCCHHHHhhcCccccc
Confidence 8999999999999999999999999999864 46778999999997644332233 456789999999999999885
No 2
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Probab=100.00 E-value=2e-64 Score=593.00 Aligned_cols=622 Identities=33% Similarity=0.584 Sum_probs=540.2
Q ss_pred CcceEEEEEEEcchhhhhcHHHHHHHHHHHHHHHHhCCCchHHHHHHHHhhhcccccCCCCChHHHHHHHHHhCCCCCcc
Q 006560 5 SIAYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLLIYPAE 84 (640)
Q Consensus 5 ~~~~~f~i~i~Lt~~G~~~~~~ii~~~~~~i~~l~~~~~~~~~~~e~~~~~~~~f~~~~~~~~~~~~~~la~~l~~~~~~ 84 (640)
..++.|.|.+.+++.|..+++++++.++++|+.+++.|+++++++|.+.+....|.+++...+.+++..++..|+.++++
T Consensus 339 ~~~~~f~i~~~~~~~g~~~~~~~~~~i~~~l~~l~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 418 (990)
T 3cww_A 339 RGFMFFIINVDLTEEGLLHVEDIILHMFQYIQKLRAEGPQEWVFQELKDLNAVAFRFKDKERPRGYTSKIAGILHYYPLE 418 (990)
T ss_dssp TTEEEEEEEEECCHHHHHTHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHTTTSCGG
T ss_pred CCccEEEEEEEEChHHhhhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcccCCcCCHHHHHHHHHHHHhhCCHH
Confidence 34689999999999999999999999999999999999999999999999999999988777889999999999889999
Q ss_pred ceeeccccCccCCHHHHHHHHhccCcCceEEEEEeCCCCCCCcCcccccccccceeecCChHHHHHhcCCCCCCCCCCCC
Q 006560 85 HVIYGEYMYEVWDEEMIKHLLGFFMPENMRIDVVSKSFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNPPEIDVSLQLP 164 (640)
Q Consensus 85 ~vl~~~~~~~~~d~~~i~~~l~~l~p~n~~i~~~~~~~~~~~~~~~~~~~~~~Y~~~~i~~~~~~~~~~~~~~~~~~~lP 164 (640)
+++.+...+..++++.|++++++|.|+|+++++++|++. ......++||+++|.+.++++++++.|.. ....+.+.+|
T Consensus 419 ~~~~~~~~i~~~t~~~i~~~~~~l~~~~~~~~~~~p~~~-~~~~~~e~~~~~~y~~~~~~~~~~~~~~~-~~~~~~~~~p 496 (990)
T 3cww_A 419 EVLTAEYLLEEFRPDLIEMVLDKLRPENVRVAIVSKSFE-GKTDRTEEWYGTQYKQEAIPDAVIAKWQN-AALNGKFKLP 496 (990)
T ss_dssp GTTTTTTCCCCCCHHHHHHHHTTCSGGGCEEEEECGGGT-TCCCEECTTTCCEEEEEECCHHHHHHHHT-CCCCTTCCCC
T ss_pred HHhccchhhhcCCHHHHHHHHHhcCHhHEEEEEEcCCCC-CCcCcccceeCceeeeecCCHHHHHHhhc-CCCCccccCC
Confidence 999888899999999999999999999999999999873 34567899999999999999999999987 3444558899
Q ss_pred CCCCccCCCccccccccCCCCCCCCCCeEeecCCceEEEeeccCcccCcceEEEEEEecCCCCCCHHHHHHHHHHHHHHH
Q 006560 165 SQNEFIPTDFSIRANDISNDLVTVTSPTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLK 244 (640)
Q Consensus 165 ~~N~~ip~~~~l~~~~~~~~~~~~~~P~~~~~~~g~~v~~~~d~~f~~P~~~i~~~~~~~~~~~~~~~~~~~~l~~~~l~ 244 (640)
.+|+|+|++|++..... .....|..+..++|+++|+++++.|++|++.+.+.+.+|....+++..+++.|++.++.
T Consensus 497 ~~~~~ip~~~~~~~~~~----~~~~~p~~~~~~ng~~v~~~~~~~f~~P~~~i~~~~~~~~~~~~~~~~~~~~L~~~ll~ 572 (990)
T 3cww_A 497 TKNEFIPTNFEILPLEA----AATPYPALIKDTAMSKLWFKQDDKFFLPKANLNFEFFSPFAYVDPLHSNMAYLYLELLK 572 (990)
T ss_dssp CCCTTCCCCCCCCCCCT----TCCSSCEEEEECSSEEEEEEECSSCCCSEEEEEEEEECGGGTSSHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcccccccCCC----CCCCCCeeeecCCCceEeeccCCccCCCcEEEEEEEeCCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999998754320 13456899999999999999999999999999999999988888999999999999999
Q ss_pred HHHhhhhhcccccccEEEEEEecceeEEEEeecCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcccc-Cccch
Q 006560 245 DELNEIIYQASVAKLETSVSIFSDKLELKVYGFNDKLPVLLSKILAIAKSFLPSDDRFKVIKEDVVRTLKNTNM-KPLSH 323 (640)
Q Consensus 245 ~~l~~~~~~a~~ag~~~~~~~~~~g~~i~~~g~s~~l~~~l~~~~~~l~~~~~~~~~f~~~k~~~~~~l~~~~~-~p~~~ 323 (640)
+.+.+..|.+.++|++++++.+.+|+.++++|++++++.+++++.+.+.+|.++++.|+++|+++++.+++... +|..+
T Consensus 573 ~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~g~~~~l~~~l~ll~~~l~~p~~~~~~f~~~k~~~~~~~~~~~~~~p~~~ 652 (990)
T 3cww_A 573 DSLNEYAYAAELAGLSYDLQNTIYGMYLSVKGYNDKQPILLKKIIEKMATFEIDEARFEIIKEAYMRSLNNFRAEQPHQH 652 (990)
T ss_dssp HHHHHHHHHHHHTTEEEEEEEETTEEEEEEEEESTTHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHGGGSCHHHH
T ss_pred HHHHHhhhHHHhCCeEEEEEEcCCeEEEEEEeccHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhcChHHH
Confidence 98888999999999999999999999999999999999999999999999999999999999999999999987 89999
Q ss_pred HHHHHHHhccCCCCCHHHHHhhhccCCHHHHHHHHHHHHhcceeEEEEeccCCHHHHHHHHHHH---HhhcCCC-CCCcc
Q 006560 324 SSYLRLQVLCQSFYDVDEKLSILHGLSLADLMAFIPELRSQLYIEGLCHGNLSQEEAIHISNIF---KSIFSVQ-PLPIE 399 (640)
Q Consensus 324 a~~~~~~~l~~~~~~~~~~~~~l~~it~ed~~~~~~~~~~~~~~~~~v~Gni~~~~~~~l~~~~---~~~l~~~-~~~~~ 399 (640)
+...+..++++..|...+..+.|++++.+++.+|+++++++.+++++++||++.+++.++++.+ ++.++.. +.+..
T Consensus 653 a~~~~~~~l~~~~~~~~~~~~~l~~lt~~~l~~~~~~~~~~~~~~~~v~Gn~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 732 (990)
T 3cww_A 653 AMYYLRLLMTEVAWTKDELKEALADVTLPRLKAFIPQLLSRLHIEALLHGNITKQAALGIMQMVEDTLIEHAHTKPLLPS 732 (990)
T ss_dssp HHHHHHHHHBSSCCCHHHHHHHHTTCCHHHHHHHHHHHHHEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHCCEECCGG
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHhcCCHHHHHHHHHHHHhhheEEEEEEcCCCHHHHHHHHHHHHHHHhccCCCCCCchh
Confidence 9999999999878888889999999999999999999999999999999999999999985444 4444322 11110
Q ss_pred ccccceEEEcCCCCeEEEEeecCCCCCCCeEEEEEEecccccCcchHHHHHHHHHHHHHhchhhHHHHHhhcccceEEEe
Q 006560 400 MRHQECVICLPSGANLVRNVSVKNKCETNSVIELYFQIEQEKGMELTRLKALIDLFDEILEEPFFNQLRTKEQLGYVVEC 479 (640)
Q Consensus 400 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ll~~~l~s~lf~~LR~k~~LgY~v~s 479 (640)
..+..+...++.+...++.. .++...|+++.++++ .|..+.++.+.+.+|+++|++++|++|||++||||+|++
T Consensus 733 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~----~~~~~~~~~~~l~ll~~il~~~lf~~LRek~~lgY~v~s 806 (990)
T 3cww_A 733 QLAAYREVQLPDRGWFVYQQ--RNEVHNNSGIEIYYQ----TDMQSTSENMFLELFAQIISEPAFNTLRTKEQLGYIVFS 806 (990)
T ss_dssp GCCCCCBBCCCTTEEEEEEE--ECSSCSSEEEEEEEE----EEECCHHHHHHHHHHHHHHHHHHHHHHTTTTCCCSEEEE
T ss_pred hccccceEEcCCCCeEEEEe--cCCCCCCcEEEEEEe----CCCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCcEEEEE
Confidence 00111222344454332211 234568888888888 766778889999999999999999999999999999999
Q ss_pred eeeeeCceeeEEEEEEcCCCChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcc
Q 006560 480 SPRVTYRVFGFCFCIQSSKYNPIYLQERIDNFISGLDELLEGLDDESFENYRSGLMAKLLEKDPSLTYESNRFWNQITDK 559 (640)
Q Consensus 480 ~~~~~~~~~~~~~~vqs~~~~~~~~~~~i~~fl~~~~~~l~~~se~ef~~~k~~l~~~~~~~~~sl~~~~~~~w~~i~~~ 559 (640)
+.....+..++.+.|||+ ++|+.+.++|+.|++.+...+.++|++||+++|.++++++...+.++..+++++|..+..+
T Consensus 807 ~~~~~~g~~~~~~~vqs~-~dp~~~~~~i~~f~~~~~~l~~~~te~el~~~k~~li~~~~~~~~~~~~~~~~~~~~i~~~ 885 (990)
T 3cww_A 807 GPRRANGIQGLRFIIQSE-KPPHYLESRVEAFLITMEKSIEDMTEEAFQKHIQALAIRRLDKPKKLSAESAKYWGEIISQ 885 (990)
T ss_dssp EEEEETTEEEEEEEEEES-SCHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHTT
T ss_pred EEEeeCCEEEEEEEEeCC-CCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC
Confidence 998888888888999998 6999999999999999988777899999999999999999999999999999999999999
Q ss_pred ccccccchHhHHHHhcCCHHHHHHHHHHHcccCCCCcceEEEEEecCCCCcc----------ccc-----ccCCCceeec
Q 006560 560 RYMFDQSQKEAEDLKSIKKNDVISWYKTYLQQWSPKCRRLAVRVWGCNTNIK----------ESE-----KHSKSALVIK 624 (640)
Q Consensus 560 ~~~f~~~~~~~~~l~~vT~~dv~~~~~~~l~~~~~~~~~l~i~v~g~~~~~~----------~~~-----~~~~~~~~~~ 624 (640)
.+.|++.+++++.|++||++||++++++++.+++.++++++++|+|+..... +.. .. .+...|+
T Consensus 886 ~~~~d~~~~~~~~i~~vT~~di~~~a~~~l~~~~~~~~~~~v~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 964 (990)
T 3cww_A 886 QYNFDRDNTEVAYLKTLTKADIIKFYKEMLAVDAPRRHKVSVHVLAREMDSNPVVGEFPAQNDINLSQAPAL-PQPEVIQ 964 (990)
T ss_dssp CCCTTHHHHHHHHHTTCCHHHHHHHHHHHTSTTCTTCEEEEEEEECTTC----------------CCCCCCC-CCCEECS
T ss_pred CCCCChHHHHHHHHHhCCHHHHHHHHHHHhhccCCCCCEEEEEEECCCCcccccccccccchhhhhcccccC-CCCeEec
Confidence 8889998999999999999999999999998754567899999999987553 111 12 3457899
Q ss_pred ChHHHhccCcccccCC
Q 006560 625 DLTAFKLSSEFYQSLC 640 (640)
Q Consensus 625 ~~~~~~~~~~~~~~~~ 640 (640)
|+.+||+....||..|
T Consensus 965 ~~~~~~~~~~~~~~~~ 980 (990)
T 3cww_A 965 NMTAFKRGLPLFPLVK 980 (990)
T ss_dssp CHHHHHHTSCBCCCCC
T ss_pred CHHHHhhcCcccccCC
Confidence 9999999999999876
No 3
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens}
Probab=100.00 E-value=3.4e-37 Score=328.71 Aligned_cols=399 Identities=11% Similarity=0.032 Sum_probs=309.5
Q ss_pred CeEeecCCceEEEeeccCcccCcceEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHhhhh---hccccc--ccEEEEEE
Q 006560 191 PTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELNEII---YQASVA--KLETSVSI 265 (640)
Q Consensus 191 P~~~~~~~g~~v~~~~d~~f~~P~~~i~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~---~~a~~a--g~~~~~~~ 265 (640)
++....+||++||+++++. .|++.+.+.+..|...+ +...+++.++..++..+..+.. +...++ |.+++.+.
T Consensus 14 ~~~~~L~NGl~v~~~~~~~--~~~~~~~~~~~~Gs~~e-~~~~g~a~lle~ll~~gt~~~~~~~l~~~l~~~g~~~~a~t 90 (434)
T 3gwb_A 14 VQTWSTAEGAKVLFVEARE--LPMFDLRLIFAAGSSQD-GNAPGVALLTNAMLNEGVAGKDVGAIAQGFEGLGADFGNGA 90 (434)
T ss_dssp CEEEECTTCCEEEEEECCS--SSEEEEEEEESCSGGGC-TTSTTHHHHHHHHGGGEETTEEHHHHHHHHHTTTCEEEEEE
T ss_pred CEEEEcCCCeEEEEEECCC--CCEEEEEEEEecccccC-CcchhHHHHHHHHHhcCcccCCHHHHHHHHHHhCCEEEeee
Confidence 5778899999999999886 48999999999887666 6778899999999876554321 222233 77888888
Q ss_pred ecceeEEEEeecCCC--HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhccccCccchHHHHHHHhccCC-C--CCHH
Q 006560 266 FSDKLELKVYGFNDK--LPVLLSKILAIAKSFLPSDDRFKVIKEDVVRTLKNTNMKPLSHSSYLRLQVLCQS-F--YDVD 340 (640)
Q Consensus 266 ~~~g~~i~~~g~s~~--l~~~l~~~~~~l~~~~~~~~~f~~~k~~~~~~l~~~~~~p~~~a~~~~~~~l~~~-~--~~~~ 340 (640)
+.+++.+.++|++++ ++.+++.+.+.+.+|.|+++.|+++|+.+++++++...+|...+.+.+...++++ + ++..
T Consensus 91 ~~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~~~~~~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 170 (434)
T 3gwb_A 91 YKDMAVASLRSLSAVDKREPALKLFAEVVGKPTFPADSLARIKNQMLAGFEYQKQNPGKLASLELMKRLYGTHPYAHASD 170 (434)
T ss_dssp CSSCEEEEEEEECSHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSTTSSCTT
T ss_pred cCCeEEEEEEecCccccHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCCCCCCCCCC
Confidence 899999999999999 9999999999999999999999999999999999987899999999888888763 2 3455
Q ss_pred HHHhhhccCCHHHHHHHHHHHHhcceeEEEEeccCCHHHHHHHHHHHHhhcCCCCCCccccccceEEEcCCCCeEEEEee
Q 006560 341 EKLSILHGLSLADLMAFIPELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSVQPLPIEMRHQECVICLPSGANLVRNVS 420 (640)
Q Consensus 341 ~~~~~l~~it~ed~~~~~~~~~~~~~~~~~v~Gni~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 420 (640)
+..+.|++++.+++++|++++|.+.+++++|+||++.+++.++++.+++.++.++.+. .+. ....+.+.... +.
T Consensus 171 G~~~~l~~it~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~~~~~~~l~~~~~~~--~~~--~~~~~~~~~~~--~~ 244 (434)
T 3gwb_A 171 GDAKSIPPITLAQLKAFHAKAYAAGNVVIALVGDLSRSDAEAIAAQVSAALPKGPALA--KIE--QPAEPKASIGH--IE 244 (434)
T ss_dssp CCTTTTTTCCHHHHHHHHHHHSCGGGEEEEEEESCCHHHHHHHHHHHHHHSCCCCCCC--CCC--CCCCCCCEEEE--EE
T ss_pred CCHHHHHhCCHHHHHHHHHHhcCcCCeEEEEEcCCCHHHHHHHHHHHHhcCCCCCCCC--CCC--CCCCCCCceEE--Ee
Confidence 6789999999999999999999999999999999999999999999998887653221 111 11122222222 22
Q ss_pred cCCCCCCCeEEEEEEecccccCcchHHHHHHHHHHHHH-hchhhHHHHHhhcccceEEEeeeeeeCceeeEEEEEEcCCC
Q 006560 421 VKNKCETNSVIELYFQIEQEKGMELTRLKALIDLFDEI-LEEPFFNQLRTKEQLGYVVECSPRVTYRVFGFCFCIQSSKY 499 (640)
Q Consensus 421 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ll~~~-l~s~lf~~LR~k~~LgY~v~s~~~~~~~~~~~~~~vqs~~~ 499 (640)
.+ ..++.+.++|+.+....++.....++..+|++. ++++||++||+++|++|+|+++.....+...+.+++++
T Consensus 245 ~~---~~~~~v~~~~~~~~~~~~d~~~l~vl~~iLg~~~~~s~L~~~lRe~~gl~Y~v~~~~~~~~~~g~~~i~~~~--- 318 (434)
T 3gwb_A 245 FP---SSQTSLMLAQLGIDRDDPDYAAVSLGNQILGGGGFGTRLMSEVREKRGLTYGVYSGFTPMQARGPFMINLQT--- 318 (434)
T ss_dssp CC---SSEEEEEEEEECCBTTCTTHHHHHHHHHHHHSSSSCSHHHHHHTTTTCCCSCEEEEECCBSSCCEEEEEEEE---
T ss_pred CC---CCceeEEecCcCCCCCCcchHHHHHHHHHhCCCcccchhHHHHHhhcCCcceeeeecccCCCceeEEEEEec---
Confidence 22 256677777772211111222334445555555 88999999999999999999988766555556666665
Q ss_pred ChhhHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhccccccccchHhHHHHhcCCH
Q 006560 500 NPIYLQERIDNFISGLDELL-EGLDDESFENYRSGLMAKLLEKDPSLTYESNRFWNQITDKRYMFDQSQKEAEDLKSIKK 578 (640)
Q Consensus 500 ~~~~~~~~i~~fl~~~~~~l-~~~se~ef~~~k~~l~~~~~~~~~sl~~~~~~~w~~i~~~~~~f~~~~~~~~~l~~vT~ 578 (640)
+|+.+.+.++.+.+.+.+.. ++++++||+++|+.+++++....++....+..+|.....+ .++++.+++.+.|++||+
T Consensus 319 ~~~~~~~~~~~i~~~l~~l~~~~~~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~vt~ 397 (434)
T 3gwb_A 319 RAEMSEGTLKLVQDVFAEYLKNGPTQKELDDAKRELAGSFPLSTASNADIVGQLGAMGFYN-LPLSYLEDFMRQSQELTV 397 (434)
T ss_dssp EGGGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC---CCCCHHHHHHHHHHHHHTT-CCTTHHHHHHHHHHHCCH
T ss_pred chhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHcC-CCccHHHHHHHHHHhCCH
Confidence 45566666666666665544 6999999999999999999999999999999998876554 567777889999999999
Q ss_pred HHHHHHHHHHcccCCCCcceEEEEEecCCCCc
Q 006560 579 NDVISWYKTYLQQWSPKCRRLAVRVWGCNTNI 610 (640)
Q Consensus 579 ~dv~~~~~~~l~~~~~~~~~l~i~v~g~~~~~ 610 (640)
+||++++++|+.++ ++++.++|+....
T Consensus 398 ~dv~~~a~~~l~~~-----~~~~~vvg~~~~~ 424 (434)
T 3gwb_A 398 EQVKAAMNKHLNVD-----KMVIVSAGPTVAQ 424 (434)
T ss_dssp HHHHHHHHHHCCGG-----GCEEEEEECCCCC
T ss_pred HHHHHHHHHhcChh-----hEEEEEEcCcccc
Confidence 99999999999863 5778888886543
No 4
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas}
Probab=100.00 E-value=1.2e-35 Score=315.81 Aligned_cols=397 Identities=11% Similarity=0.040 Sum_probs=303.5
Q ss_pred CeEeecCCceEEEeeccCcccCcceEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHh----h---hhhccccc--ccEE
Q 006560 191 PTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELN----E---IIYQASVA--KLET 261 (640)
Q Consensus 191 P~~~~~~~g~~v~~~~d~~f~~P~~~i~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~----~---~~~~a~~a--g~~~ 261 (640)
.+..+.+||++||+++++. .|++.+.+.+..|...+++...+++.++..++..+.. . ..+...++ |.++
T Consensus 4 ~~~~~L~NGl~v~~~~~~~--~~~~~~~l~~~~Gs~~e~~~~~g~ahlle~~l~~Gt~~~~~~~~~~~~~~~l~~~G~~~ 81 (424)
T 3amj_B 4 IEHWTAPSGAQVYYVENRT--LPMLDVQVDFDAGSAREPADQVGVASMTASLMDAGTGSGKSALDENAIADRLADIGARL 81 (424)
T ss_dssp CEEEECTTSCEEEEEECCS--SSEEEEEEEESCSGGGSCTTSTTHHHHHHHTGGGEECSTTSCEEHHHHHHHHHHTTCEE
T ss_pred cEEEECCCCcEEEEEECCC--CCEEEEEEEEecCCccCCCccchHHHHHHHHHHhccCCCccCCCHHHHHHHHHHhCCEE
Confidence 3557789999999999886 5789999999988776777778999999999976444 2 12233333 6788
Q ss_pred EEEEecceeEEEEeecCCCH--HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhccccCccchHHHHHHHhccCC-CCC
Q 006560 262 SVSIFSDKLELKVYGFNDKL--PVLLSKILAIAKSFLPSDDRFKVIKEDVVRTLKNTNMKPLSHSSYLRLQVLCQS-FYD 338 (640)
Q Consensus 262 ~~~~~~~g~~i~~~g~s~~l--~~~l~~~~~~l~~~~~~~~~f~~~k~~~~~~l~~~~~~p~~~a~~~~~~~l~~~-~~~ 338 (640)
+.+.+.+++.+.++++++++ +.+++.+.+.+.+|.|+++.|+++|+.+++++++...+|...+.+.+...++++ +|.
T Consensus 82 ~a~t~~~~t~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~e~~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~ 161 (424)
T 3amj_B 82 GGGAEADRASFSLRVLSSPAERNSALTILRDILAHPTFPAPVLERERARAIAGLREAQTQPGSILGRRFTELAYGKHPYG 161 (424)
T ss_dssp EEEECSSCEEEEEEEESSHHHHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHTTSGGG
T ss_pred EeecCCCeEEEEEEEeccccChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHhcCCCCCCC
Confidence 88888899999999999998 999999999999999999999999999999999887789998988888888753 222
Q ss_pred HHHHHhhhccCCHHHHHHHHHHHHhcceeEEEEeccCCHHHHHHHHHHHHhhcCCCCCCccccccceEEEcCCCCeEEEE
Q 006560 339 VDEKLSILHGLSLADLMAFIPELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSVQPLPIEMRHQECVICLPSGANLVRN 418 (640)
Q Consensus 339 ~~~~~~~l~~it~ed~~~~~~~~~~~~~~~~~v~Gni~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~ 418 (640)
.....+.|++++.+++++|++++|.+.+++++|+||++.+++.++++++++.++.++.+.. .+. ...+.+..+.
T Consensus 162 ~~~~~~~l~~it~~~l~~f~~~~y~~~~~~l~v~Gd~~~~~~~~~~~~~f~~~~~~~~~~~-~~~---~~~~~~~~~~-- 235 (424)
T 3amj_B 162 HVSSVATLQKISRDQLVSFHRTHYVARTAVVTLVGDITRAEAETIAQQLTADLPAGATLPP-LPD---PAMPRATVER-- 235 (424)
T ss_dssp CCCCHHHHHHCCHHHHHHHHHHHSCTTSCEEEEEESCCHHHHHHHHHHTTTTSCCCCCCCC-CCC---CCCCCCEEEE--
T ss_pred CCCCHHHHHhCCHHHHHHHHHHhcCCCceEEEEEeCCCHHHHHHHHHHHHhcCCCCCCCCC-CCC---CCCCCCceEE--
Confidence 1116788899999999999999999999999999999999999999988887765432211 111 1122232222
Q ss_pred eecCCCCCCCeEEEEEEecccccCcchHHHHH----HHHHHHHH-hchhhHHHHHhhcccceEEEeeeeeeCceeeEEEE
Q 006560 419 VSVKNKCETNSVIELYFQIEQEKGMELTRLKA----LIDLFDEI-LEEPFFNQLRTKEQLGYVVECSPRVTYRVFGFCFC 493 (640)
Q Consensus 419 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~----~~~ll~~~-l~s~lf~~LR~k~~LgY~v~s~~~~~~~~~~~~~~ 493 (640)
+.. ...++.+.++|+ .+..+.++.+ +..+|++. +++|||++||+++|++|+|+++.....+...+.++
T Consensus 236 ~~~---~~~~~~v~~~~~----~~~~~~~~~~~~~vl~~iLg~~~~~srL~~~lR~~~gl~y~v~~~~~~~~~~g~~~i~ 308 (424)
T 3amj_B 236 IAN---PATQAHIAIGMP----TLKRGDPDFFPLVVGNYALGGGGFESRLMKEIRDKRGLSYGAYSYFSPQKSMGLFQIG 308 (424)
T ss_dssp EEC---SSSEEEEEEEEE----EEBTTCTTHHHHHHHHHHHTTSGGGSHHHHHHTTTTCCEEEEEEEECCBSSCEEEEEE
T ss_pred eeC---CCCccEEEeecc----CCCCCCcchHHHHHHHHHhCCCCccchhHHHHHHhCCeEEEeeeeeccCCCceeEEEE
Confidence 332 135677777777 3222223334 44444443 78899999999999999999987765554555666
Q ss_pred EEcCCCChhhHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhccccccccchHhHHH
Q 006560 494 IQSSKYNPIYLQERIDNFISGLDELL-EGLDDESFENYRSGLMAKLLEKDPSLTYESNRFWNQITDKRYMFDQSQKEAED 572 (640)
Q Consensus 494 vqs~~~~~~~~~~~i~~fl~~~~~~l-~~~se~ef~~~k~~l~~~~~~~~~sl~~~~~~~w~~i~~~~~~f~~~~~~~~~ 572 (640)
+++ +|+.+.+.++.+.+.+.+.. .+++++||+++|+.+++++....++....+..++..... +..+++.+++.+.
T Consensus 309 ~~~---~~~~~~~~~~~i~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 384 (424)
T 3amj_B 309 FET---RAEKADEAVQVANDTLDAFLREGPTDAELQAAKDNLINGFALRLDSNAKILGQVAVIGYY-GLPLDYLDHYTER 384 (424)
T ss_dssp EEE---ESTTHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTSGGGGSSHHHHHHHHHHHHHT-TCCTTTTTSHHHH
T ss_pred EEe---CcccHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhhHhcCCHHHHHHHHHHHHHc-CCChhHHHHHHHH
Confidence 664 44566666666666666555 699999999999999999998888988888887765544 4567777788999
Q ss_pred HhcCCHHHHHHHHHHHcccCCCCcceEEEEEecCCCCcc
Q 006560 573 LKSIKKNDVISWYKTYLQQWSPKCRRLAVRVWGCNTNIK 611 (640)
Q Consensus 573 l~~vT~~dv~~~~~~~l~~~~~~~~~l~i~v~g~~~~~~ 611 (640)
|++||++||++++++++.++ .+++.++|+..+++
T Consensus 385 i~~vt~~dv~~~a~~~l~~~-----~~~~~~~~~~~~~~ 418 (424)
T 3amj_B 385 VQAVTVEQVREAFARHVKRE-----NLITVVVGGKASLE 418 (424)
T ss_dssp HHTCCHHHHHHHHHHHCCGG-----GCEEEEEECC----
T ss_pred HHcCCHHHHHHHHHHhcCcc-----ceEEEEECChhhhh
Confidence 99999999999999999863 57778888876653
No 5
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*
Probab=100.00 E-value=1.3e-34 Score=308.51 Aligned_cols=391 Identities=13% Similarity=0.052 Sum_probs=302.5
Q ss_pred eEeecCCceEEEeeccCcccCcceEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhcccccccEEEEEEecceeE
Q 006560 192 TCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELNEIIYQASVAKLETSVSIFSDKLE 271 (640)
Q Consensus 192 ~~~~~~~g~~v~~~~d~~f~~P~~~i~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~a~~ag~~~~~~~~~~g~~ 271 (640)
+....+||++||+++++. .|++.+.+.+..|...+++...+++.++..++..+... +.....|.+++.+.+.+++.
T Consensus 2 ~~~~L~NGl~v~~~~~~~--~~~~~~~l~~~~Gs~~e~~~~~g~ahlle~~l~~gt~~--~~~~~~G~~~na~t~~~~t~ 77 (431)
T 3cx5_A 2 EVTQLSNGIVVATEHNPS--AHTASVGVVFGSGAANENPYNNGVSNLWKNIFLSKENS--AVAAKEGLALSSNISRDFQS 77 (431)
T ss_dssp CCEEEESSSEEEEEECTT--CSSEEEEEEESCCGGGSCTTTTTHHHHHHHHHTSHHHH--HHHHHTTCEEEEEECSSCEE
T ss_pred eEEECCCCCEEEEEECCC--CCEEEEEEEEecCccCCCCCCcchHHHHHHHHhcCCCc--ccHHHcCCeeeeeecCCeEE
Confidence 446678999999999887 47899999999887777778889999999999776544 34566788999999999999
Q ss_pred EEEeecCCCHHHHHHHHHHHhccCC---CCHHHHHHHHHHHHHHHhccccCc-cchHHHHHHHhccCCC---CCHHHHHh
Q 006560 272 LKVYGFNDKLPVLLSKILAIAKSFL---PSDDRFKVIKEDVVRTLKNTNMKP-LSHSSYLRLQVLCQSF---YDVDEKLS 344 (640)
Q Consensus 272 i~~~g~s~~l~~~l~~~~~~l~~~~---~~~~~f~~~k~~~~~~l~~~~~~p-~~~a~~~~~~~l~~~~---~~~~~~~~ 344 (640)
+.+++++++++.+++++.+.+.+|. |+++.|+++|+.+++++++..++| ...+.+.+...+++++ ++..+..+
T Consensus 78 ~~~~~~~~~l~~~l~ll~~~~~~p~~~~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 157 (431)
T 3cx5_A 78 YIVSSLPGSTDKSLDFLNQSFIQQKANLLSSSNFEATKKSVLKQVQDFEDNDHPNRVLEHLHSTAFQNTPLSLPTRGTLE 157 (431)
T ss_dssp EEEEECSTTHHHHHHHHHHHHHTCSTTTTCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTTTSGGGSCTTCCHH
T ss_pred EEEEechhhHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHhhhcCchhHHHHHHHHHHhcCCCCCCCCCCCCHH
Confidence 9999999999999999999999999 999999999999999999877789 9888888888888642 45567889
Q ss_pred hhccCCHHHHHHHHHHHHhcceeEEEEeccCCHHHHHHHHHHHHhhcCCCCCCccccccceEEEcCCCCeEEEEeecCCC
Q 006560 345 ILHGLSLADLMAFIPELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSVQPLPIEMRHQECVICLPSGANLVRNVSVKNK 424 (640)
Q Consensus 345 ~l~~it~ed~~~~~~~~~~~~~~~~~v~Gni~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 424 (640)
+|++++.+++++|++++|.+.++.++|+||++.+++.+++++++..++.++.+. .. . .....+.... +.. +
T Consensus 158 ~l~~~t~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~-~~~~~~~~~~--~~~--~ 228 (431)
T 3cx5_A 158 SLENLVVADLESFANNHFLNSNAVVVGTGNIKHEDLVNSIESKNLSLQTGTKPV--LK--K-KAAFLGSEVR--LRD--D 228 (431)
T ss_dssp HHHTCCHHHHHHHHHHHSCGGGEEEEEEESCCHHHHHHHHTTSCCCSSCSCCCC--CC--C-CCCCCCEEEE--EEC--T
T ss_pred HHhhCCHHHHHHHHHhcCCCCcEEEEEEcCCCHHHHHHHHHHHhCCCCCCCCCC--CC--C-CCcccCceEE--EcC--C
Confidence 999999999999999999999999999999999999999877433454332211 00 0 0011222221 211 1
Q ss_pred CCCCeEEEEEEecccccCcchHHHHHHHHHHHHHhc-------------hhhHHHHHhhcccceEEEeeeeeeCceeeEE
Q 006560 425 CETNSVIELYFQIEQEKGMELTRLKALIDLFDEILE-------------EPFFNQLRTKEQLGYVVECSPRVTYRVFGFC 491 (640)
Q Consensus 425 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ll~~~l~-------------s~lf~~LR~k~~LgY~v~s~~~~~~~~~~~~ 491 (640)
..+++.+.++|+ .+..+.++.+...+++.+|+ ++||++||+ +|++|+|+++.........+.
T Consensus 229 ~~~~~~v~~~~~----~~~~~~~~~~~~~vl~~iL~~~~~~~~~~~~~~s~L~~~lRe-~gl~y~v~~~~~~~~~~g~~~ 303 (431)
T 3cx5_A 229 TLPKAWISLAVE----GEPVNSPNYFVAKLAAQIFGSYNAFEPASRLQGIKLLDNIQE-YQLCDNFNHFSLSYKDSGLWG 303 (431)
T ss_dssp TSSSEEEEEEEE----CCCTTCTTHHHHHHHHHHHCEEETTCTTGGGSSCTHHHHHHT-TTCCSEEEEEEEECSSCEEEE
T ss_pred CCCceEEEEEee----cCCCCCccHHHHHHHHHHcCCCccCCCCccccccHHHHHHHh-cCceeeEeEeecccCCCceEE
Confidence 246777888888 43333344555566666654 899999996 599999999876544444445
Q ss_pred EEEEcCCCChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC--CCCChhHHHHHHHHHHh-ccccccccchH
Q 006560 492 FCIQSSKYNPIYLQERIDNFISGLDELLEGLDDESFENYRSGLMAKLLE--KDPSLTYESNRFWNQIT-DKRYMFDQSQK 568 (640)
Q Consensus 492 ~~vqs~~~~~~~~~~~i~~fl~~~~~~l~~~se~ef~~~k~~l~~~~~~--~~~sl~~~~~~~w~~i~-~~~~~f~~~~~ 568 (640)
++++... ++.+.+.++.+.+.+.+..++++++||+++|+.+++++.. ..++....+..+|..++ .|.. .+ .++
T Consensus 304 i~~~~~~--~~~~~~~~~~~~~~l~~l~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~-~~~ 379 (431)
T 3cx5_A 304 FSTATRN--VTMIDDLIHFTLKQWNRLTISVTDTEVERAKSLLKLQLGQLYESGNPVNDANLLGAEVLIKGSK-LS-LGE 379 (431)
T ss_dssp EEEEESC--TTCHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHSSC-CC-HHH
T ss_pred EEEeeCc--hhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHhcCCC-CC-HHH
Confidence 5565432 1566666666666665544589999999999999999999 89999999999998754 4432 23 467
Q ss_pred hHHHHhcCCHHHHHHHHHHHcccCCCCcceEEEEEecCCCC
Q 006560 569 EAEDLKSIKKNDVISWYKTYLQQWSPKCRRLAVRVWGCNTN 609 (640)
Q Consensus 569 ~~~~l~~vT~~dv~~~~~~~l~~~~~~~~~l~i~v~g~~~~ 609 (640)
+.+.|++||++||++++++++.++ ..+++++|+...
T Consensus 380 ~~~~i~~vt~~dv~~~a~~~l~~~-----~~~~~v~g~~~~ 415 (431)
T 3cx5_A 380 AFKKIDAITVKDVKAWAGKRLWDQ-----DIAIAGTGQIEG 415 (431)
T ss_dssp HHHHHHHCCHHHHHHHHHHHTTTC-----CCEEEEEESCTT
T ss_pred HHHHHhcCCHHHHHHHHHHHcccC-----CcEEEEEcchhc
Confidence 889999999999999999999763 467788888653
No 6
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}
Probab=100.00 E-value=2.6e-34 Score=303.42 Aligned_cols=392 Identities=9% Similarity=-0.017 Sum_probs=306.5
Q ss_pred EeecCCceEEEeeccCcccCcceEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHhhhh-----hcccccccEEEEEEec
Q 006560 193 CIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELNEII-----YQASVAKLETSVSIFS 267 (640)
Q Consensus 193 ~~~~~~g~~v~~~~d~~f~~P~~~i~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~-----~~a~~ag~~~~~~~~~ 267 (640)
..+.+||++|++.+++. .|.+.+.+.+..|...+++...++++++..|+..+..... ......|.+++.+.+.
T Consensus 4 ~~~L~NGl~v~~~~~~~--~~~~~~~l~~~~Gs~~e~~~~~G~ah~lehmlf~Gt~~~~~~~~~~~l~~~G~~~na~t~~ 81 (406)
T 3eoq_A 4 EAELRNGLRVIAEVVPG--ARSVALGYFVKTGARDETKEESGVSHFLEHMVFKGPEDMDALAVNRAFDRMGAQYNAFTSE 81 (406)
T ss_dssp EEECTTSCEEEEEECTT--CSCEEEEEEESCSGGGSCGGGTTHHHHHHHHHTTCCTTCCHHHHHHHHHHTTCEEEEEECS
T ss_pred eEEcCCCCEEEEEECCC--CCeEEEEEEEccccCCCCCCCCCHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCccceecC
Confidence 45678999999999887 5789999999998877888889999999999976543211 1112337788888888
Q ss_pred ceeEEEEeecCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhccccCccchHHHHHHHhccCCC---CCHHHHHh
Q 006560 268 DKLELKVYGFNDKLPVLLSKILAIAKSFLPSDDRFKVIKEDVVRTLKNTNMKPLSHSSYLRLQVLCQSF---YDVDEKLS 344 (640)
Q Consensus 268 ~g~~i~~~g~s~~l~~~l~~~~~~l~~~~~~~~~f~~~k~~~~~~l~~~~~~p~~~a~~~~~~~l~~~~---~~~~~~~~ 344 (640)
+...+.+++.+++++.+++.+.+.+ +|.|++++|+++|+.++++++...++|...+.+.+...+++++ ++..|..+
T Consensus 82 d~t~y~~~~~~~~l~~~l~ll~d~~-~p~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~~ 160 (406)
T 3eoq_A 82 EATVYYGAVLPEFAYDLLGLFAKLL-RPALREEDFQTEKLVILEEIARYQDRPGFMAYEWARARFFQGHPLGNSVLGTRE 160 (406)
T ss_dssp SCEEEEEEECGGGHHHHHHHHHHHT-SCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCGGGCCSSCCHH
T ss_pred CeEEEEEEecHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCCcCCHH
Confidence 9999999999999999999999999 9999999999999999999998888999999999988888642 45567889
Q ss_pred hhccCCHHHHHHHHHHHHhcceeEEEEeccCCHHHHHHHHHHHHhhcCCCCCCccccccceEEEcCCCCeEEEEeecCCC
Q 006560 345 ILHGLSLADLMAFIPELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSVQPLPIEMRHQECVICLPSGANLVRNVSVKNK 424 (640)
Q Consensus 345 ~l~~it~ed~~~~~~~~~~~~~~~~~v~Gni~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 424 (640)
.|+.+|.+++++||+++|.+.++.++|+||++.+++.++++++++.++.++.+.. .+ ..+.....+ .+.. +
T Consensus 161 ~i~~~t~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~-~~-----~~~~~~~~~-~~~~--~ 231 (406)
T 3eoq_A 161 SITALTREGMAAYHRRRYLPKNMVLAATGRVDFDRLLAEAERLTEAWPEGEAERA-YP-----PLTPAFGVE-ERPY--E 231 (406)
T ss_dssp HHHHCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTCCCCCCCCC-CC-----CCCCCCEEE-EEEC--T
T ss_pred HHhhCCHHHHHHHHHHhCCccCEEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCC-CC-----CCCCCCceE-EEec--C
Confidence 9999999999999999999999999999999999999999998887776543221 11 111111222 2232 2
Q ss_pred CCCCeEEEEEEecccccCcchHHHHHHHHHHHHHhchhhHHHHHhhcccceEEEeeeeeeCceeeEEEEEEcCCCChhhH
Q 006560 425 CETNSVIELYFQIEQEKGMELTRLKALIDLFDEILEEPFFNQLRTKEQLGYVVECSPRVTYRVFGFCFCIQSSKYNPIYL 504 (640)
Q Consensus 425 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ll~~~l~s~lf~~LR~k~~LgY~v~s~~~~~~~~~~~~~~vqs~~~~~~~~ 504 (640)
...++.+.+.|+.+....++.....++..+|++.++|+||++||+ ++|+|+|+++.....+...+.+++.. +|+.+
T Consensus 232 ~~~q~~~~~~~~~~~~~~~d~~~l~vl~~iLgg~~~srL~~~lre-~gl~y~~~s~~~~~~~~g~~~i~~~~---~~~~~ 307 (406)
T 3eoq_A 232 KARALYLVALFPGVAYQEEARFPGQVLAHLLGEEGSGRLHFALVD-KGLAEVASFGLEEADRAGTFHAYVQA---DPARK 307 (406)
T ss_dssp TCSSEEEEEEEECCCTTCTTHHHHHHHHHHHHCTTTSHHHHHTTT-TTSEEEEEEEEEECSSCEEEEEEEEE---CGGGH
T ss_pred CccceEEEEEecCCCCCCchHHHHHHHHHHhCCCcchHHHHHHHH-cCCeeEEEEEecccCCceEEEEEEEe---CcchH
Confidence 225677777777322112233344556666666678999999999 99999999988766554555555554 56677
Q ss_pred HHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhccccccccchHhHHHHhcCCHHHHHH
Q 006560 505 QERIDNFISGLDELL-EGLDDESFENYRSGLMAKLLEKDPSLTYESNRFWNQITDKRYMFDQSQKEAEDLKSIKKNDVIS 583 (640)
Q Consensus 505 ~~~i~~fl~~~~~~l-~~~se~ef~~~k~~l~~~~~~~~~sl~~~~~~~w~~i~~~~~~f~~~~~~~~~l~~vT~~dv~~ 583 (640)
.+.++.+.+++.+.. +++|++||+++|+.+++++....++....+..++...+.+. ..+..+++.+.|++||++||++
T Consensus 308 ~~~~~~i~~~l~~l~~~~~t~~el~~ak~~l~~~~~~~~e~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~vt~~dv~~ 386 (406)
T 3eoq_A 308 GEVLAVLQEELDRLGREGVGEEEVERAKTPLATGLVFAGETPMQRLFHLGMEYLYTG-RYLSLEEVKARVQRVTSREVNA 386 (406)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHS-SCCCHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHhCCHHHHHH
Confidence 777888877777655 68999999999999999999888888888888766555432 3455678899999999999999
Q ss_pred HHHHHcccCCCCcceEEEEEecCC
Q 006560 584 WYKTYLQQWSPKCRRLAVRVWGCN 607 (640)
Q Consensus 584 ~~~~~l~~~~~~~~~l~i~v~g~~ 607 (640)
++++|+.++ .+ +.++|+.
T Consensus 387 ~a~~~l~~~-----~~-~~vvGp~ 404 (406)
T 3eoq_A 387 LLERGFLEK-----GL-YYLVLPH 404 (406)
T ss_dssp HHHTTTTTS-----CE-EEEEECC
T ss_pred HHHHhcCcc-----cE-EEEECCC
Confidence 999999863 45 7888875
No 7
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}
Probab=100.00 E-value=1.2e-34 Score=307.73 Aligned_cols=398 Identities=12% Similarity=0.076 Sum_probs=306.1
Q ss_pred eEeecCCceEEEeeccCcccCcceEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHhhhhh-----cccccccEEEEEEe
Q 006560 192 TCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELNEIIY-----QASVAKLETSVSIF 266 (640)
Q Consensus 192 ~~~~~~~g~~v~~~~d~~f~~P~~~i~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~-----~a~~ag~~~~~~~~ 266 (640)
+..+.+||++|++.+++. .|.+.+.+.+..|...+++...+++.++..++..+.....+ .....|.+++.+.+
T Consensus 3 ~~~~L~NGl~v~~~~~~~--~~~~~~~l~~~~Gs~~e~~~~~G~ah~leh~lf~gt~~~~~~~~~~~l~~~G~~~na~t~ 80 (421)
T 3hdi_A 3 NTMTLDNGVRIITEKMST--VRSVSIGIWVGTGSRYESAEENGISHFLEHMFFKGTNTRSAQEIAEFFDSIGGQVNAFTS 80 (421)
T ss_dssp EEEECTTSCEEEEEECTT--CSEEEEEEEESCCGGGCCGGGTTHHHHHHHHTTSBBSSSBHHHHHHHHHTTTSCEEEEEC
T ss_pred eEEEcCCCCEEEEEECCC--CCEEEEEEEEccccCCCCCCCCcHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCceeeeec
Confidence 345678999999999886 58899999999887777778889999999998654433211 11233777888888
Q ss_pred cceeEEEEeecCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhccccCccchHHHHHHHhccCCC---CCHHHHH
Q 006560 267 SDKLELKVYGFNDKLPVLLSKILAIAKSFLPSDDRFKVIKEDVVRTLKNTNMKPLSHSSYLRLQVLCQSF---YDVDEKL 343 (640)
Q Consensus 267 ~~g~~i~~~g~s~~l~~~l~~~~~~l~~~~~~~~~f~~~k~~~~~~l~~~~~~p~~~a~~~~~~~l~~~~---~~~~~~~ 343 (640)
.+...+.+++.+++++.+++++.+.+.+|.|++++|+++|+.++++++...++|...+.+.+...+++++ ++..+..
T Consensus 81 ~d~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~ 160 (421)
T 3hdi_A 81 KEYTCYYAKVLDDHAGQAIDTLSDMFFHSTFQKEELEKERKVVFEEIKMVDDTPDDIVHDLLSSATYGKHSLGYPILGTV 160 (421)
T ss_dssp SSCEEEEEEEEGGGHHHHHHHHHHHHHSBCCCHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTSGGGSCTTCCH
T ss_pred cceEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCCCCCCcCCH
Confidence 8889999999999999999999999999999999999999999999999888999999999888888642 3556788
Q ss_pred hhhccCCHHHHHHHHHHHHhcceeEEEEeccCCHHHHHHHHHHHHhhcCCCCCCccccccceEEEcCCCCeEEEEeecCC
Q 006560 344 SILHGLSLADLMAFIPELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSVQPLPIEMRHQECVICLPSGANLVRNVSVKN 423 (640)
Q Consensus 344 ~~l~~it~ed~~~~~~~~~~~~~~~~~v~Gni~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 423 (640)
+.|++++.+++++|++++|.+.++.++|+||++ +++.++++++++.++..+.+.. .+. . ...+...+ .. .
T Consensus 161 ~~l~~it~~~l~~f~~~~y~p~n~~l~v~Gd~~-~~~~~~v~~~f~~~~~~~~~~~-~~~---~-~~~~~~~~--~~-~- 230 (421)
T 3hdi_A 161 ETLNSFNEGMLRHYMDRFYTGDYVVISVAGNVH-DELIDKIKETFSQVKPTTYNYQ-GEK---P-MFLPNRIV--RK-K- 230 (421)
T ss_dssp HHHHHCCHHHHHHHHHHHSSTTTEEEEEEESCC-HHHHHHHHHHTTSSCCCCCCCC-CCC---C-CCCCCEEE--EE-C-
T ss_pred HHHHhCCHHHHHHHHHHhcCcccEEEEEEeCCC-HHHHHHHHHHhcCCCCCCCCCC-CCC---C-CCCCceEE--ec-C-
Confidence 999999999999999999999999999999999 9999999998888876532211 100 0 11122222 12 1
Q ss_pred CCCCCeEEEEEEecccccCcchHHHHHHHHHHHHHhchhhHHHHHhhcccceEEEeeeeeeCceeeEEEEEEcCCCChhh
Q 006560 424 KCETNSVIELYFQIEQEKGMELTRLKALIDLFDEILEEPFFNQLRTKEQLGYVVECSPRVTYRVFGFCFCIQSSKYNPIY 503 (640)
Q Consensus 424 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ll~~~l~s~lf~~LR~k~~LgY~v~s~~~~~~~~~~~~~~vqs~~~~~~~ 503 (640)
...++.+.+.|+.+....++.....++..+|++.++|+||++||+++|++|+|+++.....+...+.+++.. +|+.
T Consensus 231 -~~~q~~v~~~~~~~~~~~~d~~~l~vl~~iLgg~~~srL~~~lRe~~glay~~~s~~~~~~~~g~~~i~~~~---~~~~ 306 (421)
T 3hdi_A 231 -ETEQAHLCLGYPGLPIGDKDVYALVLLNNVLGGSMSSRLFQDIREKRGLCYSVFSYHSSFRDSGMLTIYAGT---GHDQ 306 (421)
T ss_dssp -CCSEEEEEEEEECCCTTCTTHHHHHHHHHHHTSSSSSHHHHHHTTTTCCCSCEEEEEEECSSCEEEEEEEEE---EGGG
T ss_pred -CCCceEEEEEEecCCCCCchHHHHHHHHHHhCCCcccHHHHHHHHhcCCEEEEEEeecccCCCceEEEEEEe---CHHH
Confidence 345666777777221111122333444555555567999999999999999999987766554445555543 6677
Q ss_pred HHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHH-HhccccccccchHhHHHHhcCCHHHH
Q 006560 504 LQERIDNFISGLDELL-EGLDDESFENYRSGLMAKLLEKDPSLTYESNRFWNQ-ITDKRYMFDQSQKEAEDLKSIKKNDV 581 (640)
Q Consensus 504 ~~~~i~~fl~~~~~~l-~~~se~ef~~~k~~l~~~~~~~~~sl~~~~~~~w~~-i~~~~~~f~~~~~~~~~l~~vT~~dv 581 (640)
+.+.++.+.+++.+.. .++|++||+++|+.+++++....++....+..++.. +..+. .+..+++.+.|++||++||
T Consensus 307 ~~~~~~~i~~~l~~l~~~~~t~~el~~ak~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~vt~~dv 384 (421)
T 3hdi_A 307 LDDLVYSIQETTSALAEKGLTEKELENGKEQLKGSLMLSLESTNSRMSRNGKNELLLKK--HRSLDEMIEQINAVQKQDV 384 (421)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC--CCCHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHcCCHHHH
Confidence 8888888888887765 689999999999999999998888888887776443 33332 2445788999999999999
Q ss_pred HHHHHHHcccCCCCcceEEEEEecCCCCcccc
Q 006560 582 ISWYKTYLQQWSPKCRRLAVRVWGCNTNIKES 613 (640)
Q Consensus 582 ~~~~~~~l~~~~~~~~~l~i~v~g~~~~~~~~ 613 (640)
++++++++ ++ .+++.++|+...++..
T Consensus 385 ~~~a~~~~-~~-----~~~~~vvgp~~~ip~~ 410 (421)
T 3hdi_A 385 SRLAKILL-SA-----SPSISLINANGELPKA 410 (421)
T ss_dssp HHHHHHHT-TS-----CCEEEEEESSCSCCSC
T ss_pred HHHHHHHc-cc-----CcEEEEECchhcCcch
Confidence 99999999 64 5788899998777543
No 8
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ...
Probab=100.00 E-value=2.7e-34 Score=306.75 Aligned_cols=390 Identities=10% Similarity=0.012 Sum_probs=310.6
Q ss_pred CeEeecCCceEEEeeccCcccCcceEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHhh-----hhhcccccccEEEEEE
Q 006560 191 PTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELNE-----IIYQASVAKLETSVSI 265 (640)
Q Consensus 191 P~~~~~~~g~~v~~~~d~~f~~P~~~i~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-----~~~~a~~ag~~~~~~~ 265 (640)
.+..+.+||++||++++ . .|++.+.+.+..|...+++...+++.++..++..+... ........|.+++.+.
T Consensus 24 ~~~~~L~nGl~v~~~~~-~--~~~~~~~~~~~~Gs~~e~~~~~g~a~lle~~~~~gt~~~~~~~~~~~l~~~G~~~na~t 100 (439)
T 1pp9_B 24 LEFTRLPNGLVIASLEN-Y--APASRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLSVTS 100 (439)
T ss_dssp CEEEECTTSCEEEEECC-C--CSEEEEEEEESCSGGGCCTTSTTHHHHHHHTTTSCBSSSCHHHHHHHHHHTTCEEEEEE
T ss_pred ceEEECCCCcEEEEEeC-C--CceEEEEEEEeccccCCCCCcCcHHHHHHHhhcCCCCcCCHHHHHHHHHHhCCeEEEEe
Confidence 45677899999999998 4 68999999999887777777789999999988654322 2222233477888888
Q ss_pred ecceeEEEEeecCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhccccCccchHHHHHHHhccCC--CCCHHHHH
Q 006560 266 FSDKLELKVYGFNDKLPVLLSKILAIAKSFLPSDDRFKVIKEDVVRTLKNTNMKPLSHSSYLRLQVLCQS--FYDVDEKL 343 (640)
Q Consensus 266 ~~~g~~i~~~g~s~~l~~~l~~~~~~l~~~~~~~~~f~~~k~~~~~~l~~~~~~p~~~a~~~~~~~l~~~--~~~~~~~~ 343 (640)
+.+++.+.+++++++++.+++.+.+.+.+|.|+++.|+++|+.+++++++...+|...+.+.+...+++. .++..+..
T Consensus 101 ~~~~t~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~ 180 (439)
T 1pp9_B 101 TRENMAYTVECLRDDVDILMEFLLNVTTAPEFRRWEVAALQPQLRIDKAVALQNPQAHVIENLHAAAYRNALANSLYCPD 180 (439)
T ss_dssp CSSCEEEEEEEEGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHBSSGGGSCSSCCG
T ss_pred cceEEEEEEEeehhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhcCCCCCCccCCH
Confidence 8999999999999999999999999999999999999999999999999877789988888888888762 23455778
Q ss_pred hhhccCCHHHHHHHHHHHHhcceeEEEEeccCCHHHHHHHHHHHHhhcCCCCCCccccccceEEEcCCCCeEEEEeecCC
Q 006560 344 SILHGLSLADLMAFIPELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSVQPLPIEMRHQECVICLPSGANLVRNVSVKN 423 (640)
Q Consensus 344 ~~l~~it~ed~~~~~~~~~~~~~~~~~v~Gni~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 423 (640)
+.|++++.+++++|++++|.+.+++++|+|| +.+++.++++.+++ ++.++.+. +. .. ...+.... +..
T Consensus 181 ~~l~~it~~~l~~f~~~~y~~~~~~l~v~G~-~~~~~~~~~~~~~~-~~~~~~~~---~~--~~-~~~~~~~~--~~~-- 248 (439)
T 1pp9_B 181 YRIGKVTPVELHDYVQNHFTSARMALIGLGV-SHPVLKQVAEQFLN-IRGGLGLS---GA--KA-KYHGGEIR--EQN-- 248 (439)
T ss_dssp GGTTTCCHHHHHHHHHHHCSGGGEEEEEESS-CHHHHHHHHHHHCC-CCCCC-CC---CC--CC-CBCCEEEE--EEC--
T ss_pred HHHhhcCHHHHHHHHHHhCCCCceEEEEeCC-CHHHHHHHHHHHhC-CCCCCCCC---CC--CC-CCcCCeEE--ecC--
Confidence 9999999999999999999999999999999 99999999998877 66442211 00 00 11222222 222
Q ss_pred CCCCCeEEEEEEecccccCcchHHHHHHHHHHHHHh------------chhhHHHHHhhcccceEEEeeeeeeCceeeEE
Q 006560 424 KCETNSVIELYFQIEQEKGMELTRLKALIDLFDEIL------------EEPFFNQLRTKEQLGYVVECSPRVTYRVFGFC 491 (640)
Q Consensus 424 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ll~~~l------------~s~lf~~LR~k~~LgY~v~s~~~~~~~~~~~~ 491 (640)
...++.+.++|+ .+..+.++.+...+|+.++ +++||++||+++||+|+|+++.....+...+.
T Consensus 249 -~~~~~~v~~~~~----~~~~~~~~~~~~~ll~~iLg~~~~~~~~~g~~s~L~~~lRe~~gl~Y~~~~~~~~~~~~g~~~ 323 (439)
T 1pp9_B 249 -GDSLVHAALVAE----SAAIGSAEANAFSVLQHVLGAGPHVKRGSNATSSLYQAVAKGVHQPFDVSAFNASYSDSGLFG 323 (439)
T ss_dssp -CCSEEEEEEEEE----CCCTTSHHHHHHHHHHHHHCCSCSBTTCCCTTCHHHHHHHHHCCSCEEEEEEEEEETTEEEEE
T ss_pred -CccceEEEEEec----CCCCCchHHHHHHHHHHHhCCCcccCCCCCccCHHHHHHHHhcCCceEEEEeeccccccceEE
Confidence 235677777788 4444446667777888877 58999999999999999999877655444455
Q ss_pred EEEEcCCCChhhHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhc-cccccccchHh
Q 006560 492 FCIQSSKYNPIYLQERIDNFISGLDELL-EGLDDESFENYRSGLMAKLLEKDPSLTYESNRFWNQITD-KRYMFDQSQKE 569 (640)
Q Consensus 492 ~~vqs~~~~~~~~~~~i~~fl~~~~~~l-~~~se~ef~~~k~~l~~~~~~~~~sl~~~~~~~w~~i~~-~~~~f~~~~~~ 569 (640)
++++. +|+.+.+.++.+++++.+.. .+++++||+++|+.++.++....++....+..+|..+.. +.+ +..+++
T Consensus 324 i~~~~---~~~~~~~~~~~~~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 398 (439)
T 1pp9_B 324 FYTIS---QAASAGDVIKAAYNQVKTIAQGNLSNPDVQAAKNKLKAGYLMSVESSEGFLDEVGSQALAAGSY--TPPSTV 398 (439)
T ss_dssp EEEEE---EGGGHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHSSC--CCHHHH
T ss_pred EEEEe---CHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhcCCC--CCHHHH
Confidence 55554 67889999999999988777 589999999999999999998888999899989987765 333 346788
Q ss_pred HHHHhcCCHHHHHHHHHHHcccCCCCcceEEEEEecCCCCcc
Q 006560 570 AEDLKSIKKNDVISWYKTYLQQWSPKCRRLAVRVWGCNTNIK 611 (640)
Q Consensus 570 ~~~l~~vT~~dv~~~~~~~l~~~~~~~~~l~i~v~g~~~~~~ 611 (640)
.+.|++||++||++++++++. + .++++++|+...++
T Consensus 399 ~~~i~~vt~~dv~~~a~~~~~-~-----~~~~~v~g~~~~~~ 434 (439)
T 1pp9_B 399 LQQIDAVADADVINAAKKFVS-G-----RKSMAASGNLGHTP 434 (439)
T ss_dssp HHHHHTCCHHHHHHHHHHHHH-S-----CEEEEEEECGGGCC
T ss_pred HHHHhcCCHHHHHHHHHHHhc-C-----CceEEEECCcccCC
Confidence 999999999999999999996 2 57888899875443
No 9
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A*
Probab=100.00 E-value=6.1e-34 Score=306.73 Aligned_cols=401 Identities=9% Similarity=0.006 Sum_probs=312.2
Q ss_pred CeEeecCCceEEEeeccCcccCcceEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHh-----hhhhcccccccEEEEEE
Q 006560 191 PTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELN-----EIIYQASVAKLETSVSI 265 (640)
Q Consensus 191 P~~~~~~~g~~v~~~~d~~f~~P~~~i~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-----~~~~~a~~ag~~~~~~~ 265 (640)
.+..+.+||++||+.++. .|++.+.+.+..|...+++...+++.++..|+..+.. +.....+..|.+++.+.
T Consensus 6 ~~~~~L~NGl~v~~~~~~---~~~~~~~l~~~~Gs~~e~~~~~Glah~lehm~f~Gt~~~~~~~~~~~le~~G~~~na~t 82 (475)
T 1hr6_A 6 FKLSSLANGLKVATSNTP---GHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHVEGRAMAETLELLGGNYQCTS 82 (475)
T ss_dssp CEEEECTTSCEEEEESCC---CSSEEEEEEESCCGGGCTTTTTTHHHHHHHTTTSCBTTBCHHHHHHHHHHTTSCEEEEE
T ss_pred ceEEECCCCCEEEEEeCC---CCEEEEEEEEccccCCCCCCCCcHHHHHHHHHhCCCCCCCHHHHHHHHHHcCCEEEEEE
Confidence 466778999999998744 5899999999998777777888999999999865432 22223344588888888
Q ss_pred ecceeEEEEeecCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhccccCccchHHHHHHHhccCCC---CCHHHH
Q 006560 266 FSDKLELKVYGFNDKLPVLLSKILAIAKSFLPSDDRFKVIKEDVVRTLKNTNMKPLSHSSYLRLQVLCQSF---YDVDEK 342 (640)
Q Consensus 266 ~~~g~~i~~~g~s~~l~~~l~~~~~~l~~~~~~~~~f~~~k~~~~~~l~~~~~~p~~~a~~~~~~~l~~~~---~~~~~~ 342 (640)
+.+++.+.+++++++++.+++.+.+.+.+|.|++++|+++|+.+++++++..++|...+.+.+...+++.+ ++..+.
T Consensus 83 ~~d~t~y~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~er~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~G~ 162 (475)
T 1hr6_A 83 SRENLMYQASVFNQDVGKMLQLMSETVRFPKITEQELQEQKLSAEYEIDEVWMKPELVLPELLHTAAYSGETLGSPLICP 162 (475)
T ss_dssp CSSCEEEEEEECGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCC
T ss_pred ccCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCCCCCCCCCcCC
Confidence 89999999999999999999999999999999999999999999999999778999999999999888642 445677
Q ss_pred HhhhccCCHHHHHHHHHHHHhcceeEEEEeccCCHHHHHHHHHHHHhhcCCCCCCccccccceEEEcCCCCeEEEEeec-
Q 006560 343 LSILHGLSLADLMAFIPELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSVQPLPIEMRHQECVICLPSGANLVRNVSV- 421 (640)
Q Consensus 343 ~~~l~~it~ed~~~~~~~~~~~~~~~~~v~Gni~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~- 421 (640)
.+.|+.++.+++++|++++|.+.++.++|+| ++.+++.++++++++.++..+.+.. .+. ... .+.... +..
T Consensus 163 ~~~l~~it~~~l~~f~~~~y~p~n~~l~v~G-~d~~~~~~~i~~~f~~~~~~~~~~~-~~~---~~~-~~~~~~--~~~~ 234 (475)
T 1hr6_A 163 RGLIPSISKYYLLDYRNKFYTPENTVAAFVG-VPHEKALELTGKYLGDWQSTHPPIT-KKV---AQY-TGGESC--IPPA 234 (475)
T ss_dssp GGGGGGCCHHHHHHHHHHHCCGGGEEEEEES-SCHHHHHHHHHHHHTTCCCCCCCCC-CCC---CCC-CCEEEE--ECCC
T ss_pred HHHHhhcCHHHHHHHHHHhCCcccEEEEEeC-CCHHHHHHHHHHHhccCCCCCCCCC-CCC---CCC-cCCeEE--Eecc
Confidence 8999999999999999999999999999999 9999999999998887765432210 000 011 121111 221
Q ss_pred --CCCCCCCeEEEEEEecccccCcchHHHHHHHHHHHHHhc---------------hhhHHHHHhhcccceEEEeeeeee
Q 006560 422 --KNKCETNSVIELYFQIEQEKGMELTRLKALIDLFDEILE---------------EPFFNQLRTKEQLGYVVECSPRVT 484 (640)
Q Consensus 422 --~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ll~~~l~---------------s~lf~~LR~k~~LgY~v~s~~~~~ 484 (640)
..++..++.+.++|+ ..+.+.++.+.+.+|+.+|+ ++||++||++++++|+|+++....
T Consensus 235 ~~~~~~~~~~~v~~~~~----~~~~~~~d~~~l~vl~~iLg~~~~f~~gg~g~~~~s~L~~~lr~~~gl~y~v~s~~~~~ 310 (475)
T 1hr6_A 235 PVFGNLPELFHIQIGFE----GLPIDHPDIYALATLQTLLGGGGSFSAGGPGKGMYSRLYTHVLNQYYFVENCVAFNHSY 310 (475)
T ss_dssp CCCSSSCCCEEEEEEEE----CCCTTCTTHHHHHHHHHHHCEEESSCCSSTTSCTTSHHHHHTTTTCSSEEEEEEEEEEC
T ss_pred cccCCCccceEEEEEEe----cCCCCCccHHHHHHHHHHhCCCcccccCCCCCCcCCHHHHHHHHhcCCeeEEEEecccc
Confidence 012346677777787 33333344555666776664 899999999999999999987765
Q ss_pred CceeeEEEEEEcCCCChhhHHHHHHHHHHHHHHHhc----CCCHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhccc
Q 006560 485 YRVFGFCFCIQSSKYNPIYLQERIDNFISGLDELLE----GLDDESFENYRSGLMAKLLEKDPSLTYESNRFWNQITDKR 560 (640)
Q Consensus 485 ~~~~~~~~~vqs~~~~~~~~~~~i~~fl~~~~~~l~----~~se~ef~~~k~~l~~~~~~~~~sl~~~~~~~w~~i~~~~ 560 (640)
.....+.+++++ +|+.+.+.++.+++++.+... ++|++||+++|+.++.++....++....+..+|..++..+
T Consensus 311 ~~~g~~~i~~~~---~~~~~~~~~~~~~~~l~~l~~~~~~~~t~~El~~ak~~l~~~~~~~~~~~~~~~~~~~~~~~~~g 387 (475)
T 1hr6_A 311 SDSGIFGISLSC---IPQAAPQAVEVIAQQMYNTFANKDLRLTEDEVSRAKNQLKSSLLMNLESKLVELEDMGRQVLMHG 387 (475)
T ss_dssp SSCEEEEEEEEE---CGGGHHHHHHHHHHHHHTTTTCTTSCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHS
T ss_pred CCCceEEEEEEe---CHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence 444555666664 688999999999999887655 5999999999999999999888898888999998764323
Q ss_pred cccccchHhHHHHhcCCHHHHHHHHHHHcccCCC----CcceEEEEEecCCCCc
Q 006560 561 YMFDQSQKEAEDLKSIKKNDVISWYKTYLQQWSP----KCRRLAVRVWGCNTNI 610 (640)
Q Consensus 561 ~~f~~~~~~~~~l~~vT~~dv~~~~~~~l~~~~~----~~~~l~i~v~g~~~~~ 610 (640)
...+ .+++.+.|++||++||++++++++.++.. .+.++++.++|+....
T Consensus 388 ~~~~-~~~~~~~i~~vt~~dv~~~a~~~l~~~~~~~~~~~~~~~~~v~g~~~~~ 440 (475)
T 1hr6_A 388 RKIP-VNEMISKIEDLKPDDISRVAEMIFTGNVNNAGNGKGRATVVMQGDRGSF 440 (475)
T ss_dssp CCCC-HHHHHHHHHTCCHHHHHHHHHHHHTTCCCCTTCCCCCCEEEEESCGGGG
T ss_pred CCCC-HHHHHHHHHcCCHHHHHHHHHHHhhhccccccccCCCcEEEEECCcccC
Confidence 3334 56788999999999999999999975200 0136788999987443
No 10
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis}
Probab=100.00 E-value=2.8e-33 Score=297.48 Aligned_cols=371 Identities=11% Similarity=0.076 Sum_probs=290.1
Q ss_pred eecCCceEEEeeccCcccCcceEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHhhh----hhccccc---ccEEEEEEe
Q 006560 194 IIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELNEI----IYQASVA---KLETSVSIF 266 (640)
Q Consensus 194 ~~~~~g~~v~~~~d~~f~~P~~~i~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~----~~~a~~a---g~~~~~~~~ 266 (640)
+..+||++||+++++.+ |++.+.+.+..|...++ .+++.++..++..+..+. .+...++ |.+++++.+
T Consensus 6 ~~L~nG~~v~~~~~~~~--~~~~~~~~~~~g~~~e~---~g~a~ll~~~l~~gt~~~~~~~~~~~~l~~~~G~~~~a~t~ 80 (425)
T 3d3y_A 6 VQLVKGVNLHVIPTEKY--KTVRLLVRFNTRLNHET---ITKRTLLSSLMETNSLNYPNQVKLSERLAELYGASFGIGVS 80 (425)
T ss_dssp EEEETTEEEEEEECSSC--SEEEEEEEEEEECCTTT---HHHHHHHHHHHHHCCSSSCSHHHHHHHHHHTTSCEEEEEEE
T ss_pred eeccCCcEEEEEecCcc--ceEEEEEEEeCCCCccc---hhHHHHHHHHHHhhhhcCCCHHHHHHHHHHHhCceEeeeee
Confidence 56789999999998874 78999999998875443 578999999998766443 2344444 777777766
Q ss_pred cce----eEEEEeecCC-------CHHHHHHHHHHHhccCC-----CCHHHHHHHHHHHHHHHhccccCccchHHHHHHH
Q 006560 267 SDK----LELKVYGFND-------KLPVLLSKILAIAKSFL-----PSDDRFKVIKEDVVRTLKNTNMKPLSHSSYLRLQ 330 (640)
Q Consensus 267 ~~g----~~i~~~g~s~-------~l~~~l~~~~~~l~~~~-----~~~~~f~~~k~~~~~~l~~~~~~p~~~a~~~~~~ 330 (640)
.++ +.++++++++ +++.+++++.+.+.+|. |+++.|+++|+.+++++++...+|...+.+.+..
T Consensus 81 ~~~t~~~~~~~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~~~~~~f~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~ 160 (425)
T 3d3y_A 81 KKGNQHWFNISMNIVNDHYLQDSQVLAEAVDFLKEIIFAPNIQAGQFEAETFQREKENLKAYLESIVEDKQTYASLALQS 160 (425)
T ss_dssp EETTEEEEEEEEEEECGGGCSSCCHHHHHHHHHHHHHHSCSEETTEECHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred ecCceEEEEEEEEecChhhccchhHHHHHHHHHHHHHhCcccccCCCCHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHH
Confidence 555 7889999987 59999999999999999 9999999999999999998777999989898888
Q ss_pred hcc-CC-C--CCHHHHHhhhccCCHHHHHHHHHHHHhcceeEEEEeccCCHHHHHHHHHHHHhhcCCCCCCccccccceE
Q 006560 331 VLC-QS-F--YDVDEKLSILHGLSLADLMAFIPELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSVQPLPIEMRHQECV 406 (640)
Q Consensus 331 ~l~-~~-~--~~~~~~~~~l~~it~ed~~~~~~~~~~~~~~~~~v~Gni~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~ 406 (640)
.++ +. + ++..+..+.|++++.+++++|++++|.+.+++++|+||++.+++.+++ ++++ ++..+.+. .+ ..
T Consensus 161 ~~~~~~~~~~~~~~g~~~~l~~~t~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~-~~~~-~~~~~~~~--~~--~~ 234 (425)
T 3d3y_A 161 VYFNQSEDQKIPSFGTVAALAEETAASLAAYYQKMLAEDQVDIFVLGDVNEAELVPLF-KQLP-FTPREEGK--AA--IF 234 (425)
T ss_dssp HHTTTCTTTTSCTTCCHHHHHHCCHHHHHHHHHHHHHHSEEEEEEEESCCHHHHHHHH-HTSC-CCCCCCCC--CC--SC
T ss_pred HhccCCCCccCCCCCCHHHHHhCCHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHH-HhCC-CCcccccc--cc--cc
Confidence 888 43 2 335677899999999999999999999999999999999999999999 8777 76543211 00 00
Q ss_pred EEcCCC--CeEEEEeecCCCCCCCeEEEEEEecccccC-cchHHHHHHHHHHHHHh----chhhHHHHHhhcccceEEEe
Q 006560 407 ICLPSG--ANLVRNVSVKNKCETNSVIELYFQIEQEKG-MELTRLKALIDLFDEIL----EEPFFNQLRTKEQLGYVVEC 479 (640)
Q Consensus 407 ~~l~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~ll~~~l----~s~lf~~LR~k~~LgY~v~s 479 (640)
...|.+ ...+ ... +...++.+.++|+ .+ ..+.++.+.+.+|+.+| +++||++||+++|++|+|++
T Consensus 235 ~~~~~~~~~~~~-~~~---~~~~~~~v~~~~~----~~~~~~~~~~~~~~vl~~iLg~~~~s~L~~~lRe~~glaY~v~~ 306 (425)
T 3d3y_A 235 YNQPIRNVIEER-TER---EVLAQSKLNLAYN----TDIYYGDSYYFALQVFNGIFGGFPHSKLFMNVREKEHLAYYASS 306 (425)
T ss_dssp CCCCCCSSCEEE-EEE---EECSSEEEEEEEE----CCCCTTSTTHHHHHHHHHHHTTSTTSHHHHHTTTTSCCCSEEEE
T ss_pred ccccCCCcceeE-Eec---CCccccEEEEEee----cCCCCCCchHHHHHHHHHHhCCChhhHHHHHHHHhcCeEEEEec
Confidence 111212 1222 111 1346778888888 43 33445566666777777 89999999999999999999
Q ss_pred eeeeeCceeeEEEEEEcCCCChhhHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhc
Q 006560 480 SPRVTYRVFGFCFCIQSSKYNPIYLQERIDNFISGLDELL-EGLDDESFENYRSGLMAKLLEKDPSLTYESNRFWNQITD 558 (640)
Q Consensus 480 ~~~~~~~~~~~~~~vqs~~~~~~~~~~~i~~fl~~~~~~l-~~~se~ef~~~k~~l~~~~~~~~~sl~~~~~~~w~~i~~ 558 (640)
+.....+. |.+++. ++|+.+.+.++.+.+.+.... .+++++||+++|+.++.++....++....+..+|..+..
T Consensus 307 ~~~~~~g~----~~i~~~-~~~~~~~~~~~~~~~~l~~l~~~~~~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (425)
T 3d3y_A 307 SIDTFRGF----MTVQTG-IDGKNRNQVLRLISTELENIRLGKIRELEIEQTKAMLKNQYILALDNAGAWLEKEYLNELM 381 (425)
T ss_dssp EEETTTTE----EEEEEE-ECGGGHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHS
T ss_pred cccccCce----EEEEEe-cCHhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhHHhcccCHHHHHHHHHHHHhh
Confidence 86654333 223332 378889999999999888776 589999999999999999998888999899989888877
Q ss_pred -cccccccchHhHHHHhcCCHHHHHHHHHHHcc
Q 006560 559 -KRYMFDQSQKEAEDLKSIKKNDVISWYKTYLQ 590 (640)
Q Consensus 559 -~~~~f~~~~~~~~~l~~vT~~dv~~~~~~~l~ 590 (640)
+.. . ..+++.+.|++||++||++++++++.
T Consensus 382 ~g~~-~-~~~~~~~~i~~vt~edv~~~a~~~~~ 412 (425)
T 3d3y_A 382 PQTM-L-TAEEWIARINAVTIPEIQEVAKRLEL 412 (425)
T ss_dssp TTSC-C-CHHHHHHHHHHCCHHHHHHHHHHCEE
T ss_pred cCCC-C-CHHHHHHHHHhCCHHHHHHHHHhccC
Confidence 443 2 35788999999999999999999763
No 11
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=100.00 E-value=9.4e-34 Score=332.42 Aligned_cols=559 Identities=9% Similarity=0.009 Sum_probs=382.4
Q ss_pred ceEEEEEEEcchhhhhcHHHHHHHHHHHHHHHHhCCCchHHHHHHHHhhhcccccCCC-CChH--HHHHHHHHhCCC-CC
Q 006560 7 AYIFVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEE-QPQD--DYAAELAGNLLI-YP 82 (640)
Q Consensus 7 ~~~f~i~i~Lt~~G~~~~~~ii~~~~~~i~~l~~~~~~~~~~~e~~~~~~~~f~~~~~-~~~~--~~~~~la~~l~~-~~ 82 (640)
.+.|.|.+..++. .+++++++.++++|+.+++.|+++++++..++..+..|..... ..+. .++..++..... .+
T Consensus 358 ~~~f~i~~~~~~~--~~~~~~~~~i~~~l~~l~~~g~~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (995)
T 2fge_A 358 QPQFGIGLKGVSE--ENVQKVEELIMDTLKKLAEEGFDNDAVEASMNTIEFSLRENNTGSFPRGLSLMLQSISKWIYDMD 435 (995)
T ss_dssp SCEEEEEEEEECG--GGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCTTSCHHHHHHHHHHHHHTTTSC
T ss_pred CeEEEEEEEeCCH--HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHhcCCC
Confidence 5788887766654 5889999999999999999999999999999988877765432 2233 456666655544 45
Q ss_pred ccceeeccccCccCCH----H----HHHHHHh-ccCcC-ceEEEEEeCCCCC-CCcCcccccccccceeecCChHHH---
Q 006560 83 AEHVIYGEYMYEVWDE----E----MIKHLLG-FFMPE-NMRIDVVSKSFAK-SQDFHYEPWFGSRYTEEDISPSLM--- 148 (640)
Q Consensus 83 ~~~vl~~~~~~~~~d~----~----~i~~~l~-~l~p~-n~~i~~~~~~~~~-~~~~~~~~~~~~~Y~~~~i~~~~~--- 148 (640)
+...+.....+..+++ + .++++++ +|.++ +..++++.|+... ......++|+...|. ..++++.+
T Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~e~~~l~~~~-~~~~~~~~~~~ 514 (995)
T 2fge_A 436 PFEPLKYTEPLKALKTRIAEEGSKAVFSPLIEKLILNNSHRVTIEMQPDPEKATQEEVEEKNILEKVK-AAMTEEDLAEL 514 (995)
T ss_dssp SSGGGCCHHHHHHHHHHHHHHCHHHHHHHHHHHHTTTCCCEEEEEEEEETTHHHHHHHHHHHHHHHHH-HTSCHHHHHHH
T ss_pred hHHHhhhHHHHHHHHHHhcCCccHHHHHHHHHHHhcCCCceEEEEEEcCccHHHHHHHHHHHHHHHHH-HhCCHHHHHHH
Confidence 5555554455566666 6 7999985 67764 6777777776521 112345777766653 23343333
Q ss_pred -------HHhcCCCCCCCCCCCCCCCCccCCCc--cccccccCCCCCCCCCCeEeecCCceEEEeeccCcccCcceEEEE
Q 006560 149 -------ELWRNPPEIDVSLQLPSQNEFIPTDF--SIRANDISNDLVTVTSPTCIIDEPLIRFWYKLDNTFKLPRANTYF 219 (640)
Q Consensus 149 -------~~~~~~~~~~~~~~lP~~N~~ip~~~--~l~~~~~~~~~~~~~~P~~~~~~~g~~v~~~~d~~f~~P~~~i~~ 219 (640)
+.|... +.+ |..+.++|... ++.. .....|......||++||++++ |..|.+++.+
T Consensus 515 ~~~~~~l~~~~~~--~~~----~~~~~~~p~~~~~~i~~-------~~~~~~~~~~~~nG~~v~~~~~--~~~~~v~~~~ 579 (995)
T 2fge_A 515 ARATEELKLKQET--PDP----PEALRCVPSLNLGDIPK-------EPTYVPTEVGDINGVKVLRHDL--FTNDIIYTEV 579 (995)
T ss_dssp HHHHHHHHHHHTS--CCC----HHHHTTSCCCCGGGSCS-------SCCCCCCEEEESSSSEEEEEEC--CCSSEEEEEE
T ss_pred HHHHHHHHHHhcC--CCC----hHHHHhcCCCCHhhcCc-------cCCCCCceeeecCCceEEEEec--CCCCeEEEEE
Confidence 234321 100 01123445432 1111 1123576777789999999986 5678898988
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHHH-HHhhhhhc-------ccccccEE-EE--EEec-----ceeEEEEeecCCCHHH
Q 006560 220 RINLKGGYDNVKNCILTELFIHLLKD-ELNEIIYQ-------ASVAKLET-SV--SIFS-----DKLELKVYGFNDKLPV 283 (640)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~l~~~~l~~-~l~~~~~~-------a~~ag~~~-~~--~~~~-----~g~~i~~~g~s~~l~~ 283 (640)
.+..+.. ++...+.+.|++.++.. ++....+. ...+|+++ ++ +.+. .++.+++++++++++.
T Consensus 580 ~~~~~~~--~~~~~~~~~l~~~~l~~~Gt~~~s~~el~~~l~~~~ggl~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~ 657 (995)
T 2fge_A 580 VFDIGSL--KHELLPLVPLFCQSLLEMGTKDLTFVQLNQLIGRKTGGISVYPLTSSVRGKDEPCSKIIVRGKSMAGRADD 657 (995)
T ss_dssp EEECTTS--CTTTGGGHHHHHHHHHHSCCSSSCHHHHHHHHHHHSSEEEEEEEEEEETTEEEEEEEEEEEEEEEGGGHHH
T ss_pred EeeCCCC--CHHHhhhHHHHHHHHHhCCCCCCCHHHHHHHHHHhcCceEeeccccccCccccccceEEEEEEEehhhHHH
Confidence 8887543 45566788888888876 55443322 24456667 44 4433 7899999999999999
Q ss_pred HHHHHHHHhccCCCCHH-HHHHHHHHHHHHHhcccc-CccchHHHHHHHhccCCC-C-----C------HHHHH----hh
Q 006560 284 LLSKILAIAKSFLPSDD-RFKVIKEDVVRTLKNTNM-KPLSHSSYLRLQVLCQSF-Y-----D------VDEKL----SI 345 (640)
Q Consensus 284 ~l~~~~~~l~~~~~~~~-~f~~~k~~~~~~l~~~~~-~p~~~a~~~~~~~l~~~~-~-----~------~~~~~----~~ 345 (640)
+++++.+.|.+|.|+++ .|+++|++++..+++... ++...+...+...+.+.. + + ..+.. +.
T Consensus 658 ~l~ll~e~l~~p~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~gl~~~~~~~~l~~~~~e~ 737 (995)
T 2fge_A 658 LFNLMNCLLQEVQFTDQQRFKQFVSQSRARMENRLRGSGHGIAAARMDAMLNIAGWMSEQMGGLSYLEFLHTLEKKVDED 737 (995)
T ss_dssp HHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCHHHHHHHHHHSHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhCChhHHHHHHHccHHHHHHHHHHHHhhhcC
Confidence 99999999999999998 999999999999999875 677777777776654322 1 0 11111 55
Q ss_pred hccCCHHHHHHHHHHHHhcceeEEEEeccCCH-HHHHHHHHHHHhhc-CCCCCCccccccceEEEcCCCCeEEEEeecCC
Q 006560 346 LHGLSLADLMAFIPELRSQLYIEGLCHGNLSQ-EEAIHISNIFKSIF-SVQPLPIEMRHQECVICLPSGANLVRNVSVKN 423 (640)
Q Consensus 346 l~~it~ed~~~~~~~~~~~~~~~~~v~Gni~~-~~~~~l~~~~~~~l-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 423 (640)
++.+ .+++.+|++++|.+.+++++|+||++. +++.++++.+++.+ +..+.+.. ....+.+.... ....
T Consensus 738 ~~~i-~~~L~~~~~~~~~~~~~~~~v~Gd~~~~~~~~~~~~~~~~~l~p~~~~~~~------~~~~~~~~~~~-~~~~-- 807 (995)
T 2fge_A 738 WEGI-SSSLEEIRRSLLARNGCIVNMTADGKSLTNVEKSVAKFLDLLPENPSGGLV------TWDGRLPLRNE-AIVI-- 807 (995)
T ss_dssp HHHH-HHHHHHHHHHHCCSTTCEEEEEECHHHHHHHHHHHHHHHHTSCSSCSSCSC------CCCCCCCCCCE-EEEC--
T ss_pred HHHH-HHHHHHHHHHHcCcCCcEEEEEeCHHHHHHHHHHHHHHHHhhCccCCCCCC------cccccCCccce-EEEe--
Confidence 7889 999999999999999999999999995 88999999888878 65432210 01122221111 1121
Q ss_pred CCCCCeEEEEEEecccccCcchHHHHHHHHHHHHHhc-hhhHHHHHhhcccceEEEeeeeeeCceeeEEEEEEcCCCChh
Q 006560 424 KCETNSVIELYFQIEQEKGMELTRLKALIDLFDEILE-EPFFNQLRTKEQLGYVVECSPRVTYRVFGFCFCIQSSKYNPI 502 (640)
Q Consensus 424 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ll~~~l~-s~lf~~LR~k~~LgY~v~s~~~~~~~~~~~~~~vqs~~~~~~ 502 (640)
+. ....+...+. ....+.++.+.+.+|+++|+ ++||++||+ +|++|+++++... .|..+. |++.. +|
T Consensus 808 ~~-~v~~~~~~~~----~~~~~~~d~~al~vl~~iLg~~~L~~~iRe-~g~aYg~~s~~~~-~G~~~~-~~s~~---dp- 875 (995)
T 2fge_A 808 PT-QVNYVGKAGN----IYSTGYELDGSAYVISKHISNTWLWDRVRV-SGGAYGGFCDFDS-HSGVFS-YLSYR---DP- 875 (995)
T ss_dssp SC-SSBEEEEEEE----GGGGTCCCCTHHHHHHHHHHHTHHHHHTTT-TTCCSEEEEEEET-TTTEEE-EEEES---BS-
T ss_pred cC-ceEEEEEecC----CCCCCCcccHHHHHHHHHHCCCccHHHhhh-cCCCcccceEeCC-CccEEE-EEEEc---CC-
Confidence 11 2222222222 11233445566677777775 588999999 9999999998765 444330 33332 33
Q ss_pred hHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhccccccccchHhHHHHhcCCHHHH
Q 006560 503 YLQERIDNFISGLDELL-EGLDDESFENYRSGLMAKLLEKDPSLTYESNRFWNQITDKRYMFDQSQKEAEDLKSIKKNDV 581 (640)
Q Consensus 503 ~~~~~i~~fl~~~~~~l-~~~se~ef~~~k~~l~~~~~~~~~sl~~~~~~~w~~i~~~~~~f~~~~~~~~~l~~vT~~dv 581 (640)
.+.+.++.|...+.... .++|++||+++|.++++++ ..+.++.+.+.+.|..++.| ..+++.+++.+.|.+||++||
T Consensus 876 ~~~~~~~~~~~~~~~l~~~~~te~el~~ak~~li~~~-~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~i~~vT~edv 953 (995)
T 2fge_A 876 NLLKTLDIYDGTGDFLRGLDVDQETLTKAIIGTIGDV-DSYQLPDAKGYSSLLRHLLG-VTDEERQRKREEILTTSLKDF 953 (995)
T ss_dssp CSHHHHHHHHTHHHHHHTCCCCHHHHHHHHHHHHHHH-TCCCCHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHTCCHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc-cCCCCHHHHHHHHHHHHHcC-cCHHHHHHHHHHHHcCCHHHH
Confidence 34556666666555333 4899999999999999999 45788899999999888876 467778899999999999999
Q ss_pred HHHHHHHcccCCCCcceEEEEEecCCCCcccc
Q 006560 582 ISWYKTYLQQWSPKCRRLAVRVWGCNTNIKES 613 (640)
Q Consensus 582 ~~~~~~~l~~~~~~~~~l~i~v~g~~~~~~~~ 613 (640)
++++++|+.+ ..+.++.|+|+...+.+.
T Consensus 954 ~~~a~~~~~~----~~~~~~~vvG~~~~i~~~ 981 (995)
T 2fge_A 954 KDFAQAIDVV----RDKGVAVAVASAEDIDAA 981 (995)
T ss_dssp HHHHHHHHHH----HHHCEEEEEECHHHHHHH
T ss_pred HHHHHHHHhh----hccCCEEEECCHHHHHhh
Confidence 9999999975 126888999998766554
No 12
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C
Probab=100.00 E-value=1.1e-32 Score=294.59 Aligned_cols=399 Identities=9% Similarity=0.022 Sum_probs=295.0
Q ss_pred CeEeecCCceEEEeeccCcccCcceEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHhhhh---hcc--cccccEEEEEE
Q 006560 191 PTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELNEII---YQA--SVAKLETSVSI 265 (640)
Q Consensus 191 P~~~~~~~g~~v~~~~d~~f~~P~~~i~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~---~~a--~~ag~~~~~~~ 265 (640)
.+....+||++|++.++.. .|.+.+.+.+..|...++....+++.++..|+..+..... ... ...|.+++.+.
T Consensus 7 ~~~~~L~NGl~v~~~~~~~--~~~v~~~~~~~~Gs~~e~~~~~Glah~lehmlf~Gt~~~~~~~l~~~l~~~g~~~na~t 84 (445)
T 3ami_A 7 TFETTLPNGLKVVVREDHR--APTLVHMVWYRVGSMDETTGTTGVAHALEHMMFKGTKDVGPGEFSKRVAAMGGRDNAFT 84 (445)
T ss_dssp EEEEECTTSCEEEEEECTT--SSEEEEEEEESCCGGGCCTTCTTHHHHHHHHTTSCBSSSCTTHHHHHHHHTTCEEEEEE
T ss_pred cEEEECCCCCEEEEEECCC--CCeEEEEEEEeeccCCCCCCCccHHHHHHHhhcCCCCCCCHHHHHHHHHHhCCcccccc
Confidence 3556789999999999775 6789999999888766666778999999999865433211 111 12356788888
Q ss_pred ecceeEEEEeecCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHh-ccccCccchHHHHHHHhccCCC---CCHHH
Q 006560 266 FSDKLELKVYGFNDKLPVLLSKILAIAKSFLPSDDRFKVIKEDVVRTLK-NTNMKPLSHSSYLRLQVLCQSF---YDVDE 341 (640)
Q Consensus 266 ~~~g~~i~~~g~s~~l~~~l~~~~~~l~~~~~~~~~f~~~k~~~~~~l~-~~~~~p~~~a~~~~~~~l~~~~---~~~~~ 341 (640)
+.+...+.+++.+++++.+|+++.+.+.+|.|+++.|+++|+.++++++ +..++|...+.+.+...+++++ ++..+
T Consensus 85 ~~d~t~y~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~e~~~v~~e~~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G 164 (445)
T 3ami_A 85 TRDYTAYYQQVPSSRLSDVMGLEADRMANLVVDDELFKKEIQVIAEERRWRTDDKPRSKAYEALMAASYVAHPYRVPVIG 164 (445)
T ss_dssp CSSCEEEEEEEEGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHTGGGCHHHHHHHHHHHHHCSSSGGGSCTTC
T ss_pred CCCeEEEEEECCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHhccCCCCCCCCCC
Confidence 8888888888899999999999999999999999999999999999999 6667899888898888888542 34557
Q ss_pred HHhhhccCCHHHHHHHHHHHHhcceeEEEEeccCCHHHHHHHHHHHHhhcCCCCCCccccccceEEEcCCCCeEEEEeec
Q 006560 342 KLSILHGLSLADLMAFIPELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSVQPLPIEMRHQECVICLPSGANLVRNVSV 421 (640)
Q Consensus 342 ~~~~l~~it~ed~~~~~~~~~~~~~~~~~v~Gni~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 421 (640)
..++|+++|.+++++||+++|.+.++.++|+||++.+++.++++++++.++.++.+....+. .....+...+ .+..
T Consensus 165 ~~e~l~~it~~~l~~f~~~~y~p~n~~l~vvGd~d~~~~~~~v~~~f~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~ 240 (445)
T 3ami_A 165 WMNDIQNMTAQDVRDWYKRWYGPNNATVVVVGDVEHEAVFRLAEQTYGKLARVEAPARKQQG---EPQQAGVRRV-TVKA 240 (445)
T ss_dssp CHHHHHHCCHHHHHHHHHHHCSGGGEEEEEEESCCHHHHHHHHHHTGGGSCCCCCCCCCCCC---CCCCCSCEEE-EEEE
T ss_pred CHHHHhhCCHHHHHHHHHHhCCccceEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCCCCCC---CCCCCCceEE-EEec
Confidence 88999999999999999999999999999999999999999999988878754322110110 0111222222 1222
Q ss_pred CCCCCCCeEEEEEEecccccCc---ch-HHHHHHHHHHHH----HhchhhHHHHHhhcccceEEEeeeeee-Cc-eeeEE
Q 006560 422 KNKCETNSVIELYFQIEQEKGM---EL-TRLKALIDLFDE----ILEEPFFNQLRTKEQLGYVVECSPRVT-YR-VFGFC 491 (640)
Q Consensus 422 ~~~~~~~~~v~~~~~~~~~~~~---~~-~~~~~~~~ll~~----~l~s~lf~~LR~k~~LgY~v~s~~~~~-~~-~~~~~ 491 (640)
...++.+.+.|.+ +. .+ .++...+.+++. .++||||++||++++++|+|+++.... .+ ...+.
T Consensus 241 ---~~~~~~v~l~~~~----~~~~~~~~~~~~~~~~vl~~iLg~~~~srL~~~lre~~gl~y~v~~~~~~~~~~~~g~~~ 313 (445)
T 3ami_A 241 ---PAELPYLALAWHV----PAIVDLDKSRDAYALEILAAVLDGYDGARMTRQLVRGNKHAVSAGAGYDSLSRGQQGLFI 313 (445)
T ss_dssp ---ECSSCEEEEEEEE----CCCSSTTCCHHHHHHHHHHHHHHSSTTCHHHHHTTTTSCCEEEEEEECCCCCSSCCEEEE
T ss_pred ---CCCccEEEEEEEc----CCcccccCChhHHHHHHHHHHHcCCcchHHHHHHhhcCCcEEEEEeeccccccCCCCeEE
Confidence 1345667777773 32 22 344444444444 455999999999999999999986642 22 33444
Q ss_pred EEEEcCCCChh-hHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhccccccccchHh
Q 006560 492 FCIQSSKYNPI-YLQERIDNFISGLDELL-EGLDDESFENYRSGLMAKLLEKDPSLTYESNRFWNQITDKRYMFDQSQKE 569 (640)
Q Consensus 492 ~~vqs~~~~~~-~~~~~i~~fl~~~~~~l-~~~se~ef~~~k~~l~~~~~~~~~sl~~~~~~~w~~i~~~~~~f~~~~~~ 569 (640)
+++.. .|+ .+++.++.+.+++.+.. .+++++||+++|+.++.++....++....+..+....+.+ .+.+...++
T Consensus 314 i~~~~---~~~~~~~~~~~~i~~~l~~l~~~g~t~~el~~ak~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~ 389 (445)
T 3ami_A 314 LEGVP---SKGVTIAQLETDLRAQVRDIAAKGVTEAELSRVKSQMVAGKVYEQDSLMGQATQIGGLEVLG-LSWRDDDRF 389 (445)
T ss_dssp EEEEE---CTTCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHTTT-CCTTHHHHH
T ss_pred EEEEE---CCCCCHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHcC-CChHHHHHH
Confidence 55544 233 35556666666665544 6999999999999999999988888887777776666554 345666788
Q ss_pred HHHHhcCCHHHHHHHHHHHcccCCCCcceEEEEEecCCCCcc
Q 006560 570 AEDLKSIKKNDVISWYKTYLQQWSPKCRRLAVRVWGCNTNIK 611 (640)
Q Consensus 570 ~~~l~~vT~~dv~~~~~~~l~~~~~~~~~l~i~v~g~~~~~~ 611 (640)
.+.|++||.+||++++++|+.++ ..++.++|+...++
T Consensus 390 ~~~i~~vt~~dv~~~a~~~l~~~-----~~~~~~~~p~~~~~ 426 (445)
T 3ami_A 390 YQQLRSVTAAEVKAAAARLLTDD-----TLTVANLVPLPPDP 426 (445)
T ss_dssp HHHHHTCCHHHHHHHHHTTSCST-----TEEEEEEEEECC--
T ss_pred HHHHHcCCHHHHHHHHHHHcCcC-----CeEEEEEccCccCc
Confidence 99999999999999999999863 45666777655443
No 13
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B*
Probab=100.00 E-value=5.1e-32 Score=289.38 Aligned_cols=398 Identities=9% Similarity=0.040 Sum_probs=298.0
Q ss_pred CeEeecCCceEEEeeccCcccCcceEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHhhhhh---cc--cccccEEEEEE
Q 006560 191 PTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELNEIIY---QA--SVAKLETSVSI 265 (640)
Q Consensus 191 P~~~~~~~g~~v~~~~d~~f~~P~~~i~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~---~a--~~ag~~~~~~~ 265 (640)
++..+.+||++|++.++.. .+.+.+.+.+..|...++....+++.++..++..+.....+ .. ...|.+++.+.
T Consensus 7 ~~~~~L~NGl~v~~~~~~~--~~~~~~~~~~~~Gs~~e~~~~~G~ah~le~~~~~Gt~~~~~~~l~~~l~~~g~~~na~t 84 (443)
T 1hr6_B 7 TRTSKLPNGLTIATEYIPN--TSSATVGIFVDAGSRAENVKNNGTAHFLEHLAFKGTQNRPQQGIELEIENIGSHLNAYT 84 (443)
T ss_dssp CEEEECTTSCEEEEEECSS--CSEEEEEEEEECSGGGCCTTTTTHHHHHHHHTTSBBSSCBHHHHHHHHHHTTCEEEEEE
T ss_pred ceEEECCCCCEEEEEECCC--CCEEEEEEEEccccCCCCCCCCcHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCeEEEEE
Confidence 4667789999999998665 34788899998887666667788999999998544322111 11 11266788888
Q ss_pred ecceeEEEEeecCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhccccCccchHHHHHHHhccCCC---CCHHHH
Q 006560 266 FSDKLELKVYGFNDKLPVLLSKILAIAKSFLPSDDRFKVIKEDVVRTLKNTNMKPLSHSSYLRLQVLCQSF---YDVDEK 342 (640)
Q Consensus 266 ~~~g~~i~~~g~s~~l~~~l~~~~~~l~~~~~~~~~f~~~k~~~~~~l~~~~~~p~~~a~~~~~~~l~~~~---~~~~~~ 342 (640)
+.+...+.+++.+++++.+++++.+.+.+|.|+++.|+++|+.++++++...++|...+.+.+...+++++ ++..+.
T Consensus 85 ~~~~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~e~~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 164 (443)
T 1hr6_B 85 SRENTVYYAKSLQEDIPKAVDILSDILTKSVLDNSAIERERDVIIRESEEVDKMYDEVVFDHLHEITYKDQPLGRTILGP 164 (443)
T ss_dssp CSSEEEEEEEEEGGGHHHHHHHHHHHHHSBCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCC
T ss_pred CCCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCCCCCcCC
Confidence 88889999999999999999999999999999999999999999999998888999888888888888542 234567
Q ss_pred HhhhccCCHHHHHHHHHHHHhcceeEEEEeccCCHHHHHHHHHHHHhhcCCCCCCccccccc--eEEEcCCCCeEEEEee
Q 006560 343 LSILHGLSLADLMAFIPELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSVQPLPIEMRHQE--CVICLPSGANLVRNVS 420 (640)
Q Consensus 343 ~~~l~~it~ed~~~~~~~~~~~~~~~~~v~Gni~~~~~~~l~~~~~~~l~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~ 420 (640)
.+.|++++.+++++|++++|.+.++.++|+||++.+++.++++++++.++..+.+.. .+.. ..... .+.... +.
T Consensus 165 ~~~i~~~~~~~l~~f~~~~y~~~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~--~~ 240 (443)
T 1hr6_B 165 IKNIKSITRTDLKDYITKNYKGDRMVLAGAGAVDHEKLVQYAQKYFGHVPKSESPVP-LGSPRGPLPVF-CRGERF--IK 240 (443)
T ss_dssp HHHHHHCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTSCCCSSCCC-TTSCCSSCCCC-CCEEEE--EE
T ss_pred HHHHhhCCHHHHHHHHHhcCcCCCEEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCC-cccccCCCCCC-CCCeEE--ec
Confidence 889999999999999999999999999999999999999999998887775432211 1000 00011 121211 22
Q ss_pred cCCCCCCCeEEEEEEecccccCcchHHHHHHHHHHHHHh-------------chhhHHHHHhhcccceEEEeeeeeeCce
Q 006560 421 VKNKCETNSVIELYFQIEQEKGMELTRLKALIDLFDEIL-------------EEPFFNQLRTKEQLGYVVECSPRVTYRV 487 (640)
Q Consensus 421 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ll~~~l-------------~s~lf~~LR~k~~LgY~v~s~~~~~~~~ 487 (640)
. +..+++.+.+.|. .+..+.++...+.+++.+| +|+||++||++++++|+++++.......
T Consensus 241 ~--~~~~~~~v~~~~~----~~~~~~~~~~~l~vl~~iLg~~~r~~~~g~~~~s~L~~~lre~~glay~~~~~~~~~~~~ 314 (443)
T 1hr6_B 241 E--NTLPTTHIAIALE----GVSWSAPDYFVALATQAIVGNWDRAIGTGTNSPSPLAVAASQNGSLANSYMSFSTSYADS 314 (443)
T ss_dssp C--TTCSEEEEEEEEE----CCCTTCTTHHHHHHHHHHHCEEETTTBCSSSSCCHHHHHHHSTTCSCSEEEEEEEECSSC
T ss_pred c--CCccceEEEEEEe----cCCCCCccHHHHHHHHHHhCCCcccCCCCCCcccHHHHHHHHHcCCeEEEEeeecCCCCc
Confidence 2 2345667777777 3333333444555555555 5899999999999999999987664443
Q ss_pred eeEEEEEEcCCCC--hhhHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHh-cccccc
Q 006560 488 FGFCFCIQSSKYN--PIYLQERIDNFISGLDELL-EGLDDESFENYRSGLMAKLLEKDPSLTYESNRFWNQIT-DKRYMF 563 (640)
Q Consensus 488 ~~~~~~vqs~~~~--~~~~~~~i~~fl~~~~~~l-~~~se~ef~~~k~~l~~~~~~~~~sl~~~~~~~w~~i~-~~~~~f 563 (640)
..+.+++.. + |+.+.+.++.+.+++.+.. .+++++||+++|..+++++....++....+..+...++ .+. ..
T Consensus 315 g~~~i~~~~---~~~~~~~~~~~~~~~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~ 390 (443)
T 1hr6_B 315 GLWGMYIVT---DSNEHNVRLIVNEILKEWKRIKSGKISDAEVNRAKAQLKAALLLSLDGSTAIVEDIGRQVVTTGK-RL 390 (443)
T ss_dssp EEEEEEEEE---ETTTCCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHSS-CC
T ss_pred eEEEEEEEe---cCChhHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCC-cC
Confidence 444445543 4 6677777777777776655 56999999999999999999988888777776665543 332 33
Q ss_pred ccchHhHHHHhcCCHHHHHHHHHHHcccCCCCcceEEEEEecCCCCc
Q 006560 564 DQSQKEAEDLKSIKKNDVISWYKTYLQQWSPKCRRLAVRVWGCNTNI 610 (640)
Q Consensus 564 ~~~~~~~~~l~~vT~~dv~~~~~~~l~~~~~~~~~l~i~v~g~~~~~ 610 (640)
+ .+++.+.|++||.+||++++++|+.++ ..++.++|+...+
T Consensus 391 ~-~~~~~~~i~~vt~~dv~~~a~~~l~~~-----~~~~~v~g~~~~~ 431 (443)
T 1hr6_B 391 S-PEEVFEQVDKITKDDIIMWANYRLQNK-----PVSMVALGNTSTV 431 (443)
T ss_dssp C-HHHHHHHHHTCCHHHHHHHHHHHSSSC-----CEEEEEEECGGGC
T ss_pred C-HHHHHHHHHhCCHHHHHHHHHHHhccC-----CcEEEEECCcccC
Confidence 4 467889999999999999999999863 5778888886543
No 14
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ...
Probab=100.00 E-value=2.5e-31 Score=284.19 Aligned_cols=398 Identities=10% Similarity=-0.004 Sum_probs=295.4
Q ss_pred CeEeecCCceEEEeeccCcccCcceEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhc-----ccccccEEEEEE
Q 006560 191 PTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELNEIIYQ-----ASVAKLETSVSI 265 (640)
Q Consensus 191 P~~~~~~~g~~v~~~~d~~f~~P~~~i~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~-----a~~ag~~~~~~~ 265 (640)
.+..+.+||++|++.++. .|.+.+.+.+..|...++....+++.++..++..+.....+. ....|.+++.+.
T Consensus 14 ~~~~~L~NGl~v~~~~~~---~~~~~~~l~~~~Gs~~e~~~~~Glahllehmlf~GT~~~~~~~~~~~l~~~G~~~na~t 90 (446)
T 1pp9_A 14 TQVSQLDNGLRVASEQSS---QPTCTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNRPGNALEKEVESMGAHLNAYS 90 (446)
T ss_dssp CEEEECTTCCEEEEEECS---CSEEEEEEEESCSGGGCCTTTTTHHHHHHHHTTSCBSSSTTTHHHHHHHHTTCEEEEEE
T ss_pred ceEEECCCCCEEEEEeCC---CCEEEEEEEEccccCCCCCCCCcHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCEEEEEE
Confidence 456678999999997754 378899999998877666677899999999986543322111 112366788888
Q ss_pred ecceeEEEEeecCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhccccCccchHHHHHHHhccCCC---CCHHHH
Q 006560 266 FSDKLELKVYGFNDKLPVLLSKILAIAKSFLPSDDRFKVIKEDVVRTLKNTNMKPLSHSSYLRLQVLCQSF---YDVDEK 342 (640)
Q Consensus 266 ~~~g~~i~~~g~s~~l~~~l~~~~~~l~~~~~~~~~f~~~k~~~~~~l~~~~~~p~~~a~~~~~~~l~~~~---~~~~~~ 342 (640)
+.+...+.+++.+++++.+++++.+.+.+|.|++++|+++|+.++++++...++|...+.+.+...+++++ ++..+.
T Consensus 91 ~~d~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~ek~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 170 (446)
T 1pp9_A 91 TREHTAYYIKALSKDLPKAVELLADIVQNCSLEDSQIEKERDVILQELQENDTSMRDVVFNYLHATAFQGTPLAQSVEGP 170 (446)
T ss_dssp CSSCEEEEEEEEGGGHHHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCC
T ss_pred cCCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCCCCCCcCC
Confidence 88889999999999999999999999999999999999999999999998888998888888888887532 335577
Q ss_pred HhhhccCCHHHHHHHHHHHHhcceeEEEEeccCCHHHHHHHHHHHHhhcCCCCCCccccccceEEEcCCCCeEEEEeecC
Q 006560 343 LSILHGLSLADLMAFIPELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSVQPLPIEMRHQECVICLPSGANLVRNVSVK 422 (640)
Q Consensus 343 ~~~l~~it~ed~~~~~~~~~~~~~~~~~v~Gni~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 422 (640)
.+.|++++.+++++||+++|.+.++.++|+||++.+++.++++++++.++..+.+.. .+..... ...+.... +..
T Consensus 171 ~~~l~~~~~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~-~~~~~~~-~~~~~~~~--~~~- 245 (446)
T 1pp9_A 171 SENVRKLSRADLTEYLSRHYKAPRMVLAAAGGLEHRQLLDLAQKHFSGLSGTYDEDA-VPTLSPC-RFTGSQIC--HRE- 245 (446)
T ss_dssp HHHHHHCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTSCSCCCSSC-CCCCCCC-CCCCEEEE--EEE-
T ss_pred HHHHHhCCHHHHHHHHHhccCCCCEEEEEEcCCCHHHHHHHHHHHhccCCCCCCCCc-cccCCCC-CCCCceEE--Eec-
Confidence 889999999999999999999999999999999999999999988887765432210 0000000 11121221 111
Q ss_pred CCCCCCeEEEEEEecccccCcchHHHHHHHHHHHHH-------------hchhhHHHHHhhcccceEEEeeeeeeCceee
Q 006560 423 NKCETNSVIELYFQIEQEKGMELTRLKALIDLFDEI-------------LEEPFFNQLRTKEQLGYVVECSPRVTYRVFG 489 (640)
Q Consensus 423 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ll~~~-------------l~s~lf~~LR~k~~LgY~v~s~~~~~~~~~~ 489 (640)
+..+++.+.+.|. ....+.++...+.+++.+ ++|+||++|| +++++|+++++.........
T Consensus 246 -~~~~~~~v~~~~~----~~~~~~~d~~al~vl~~iLg~~~~~~~~g~~~~srL~~~lr-~~glay~~~s~~~~~~~~g~ 319 (446)
T 1pp9_A 246 -DGLPLAHVAIAVE----GPGWAHPDNVALQVANAIIGHYDCTYGGGAHLSSPLASIAA-TNKLCQSFQTFNICYADTGL 319 (446)
T ss_dssp -TTSSSEEEEEEEE----ECCTTCTHHHHHHHHHHHHCEEETTCSCGGGCSSHHHHHHH-HHTCCSEEEEEEEECSSCEE
T ss_pred -CCccceEEEEEEe----cCCCCCccHHHHHHHHHHhCCCcccCCCCCCCCCHHHHHHH-hcCCeEEEEEecccCCCCeE
Confidence 1235677777777 332222333444444444 4689999999 57899999987765443344
Q ss_pred EEEEEEcCCCChhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhccccccccchHh
Q 006560 490 FCFCIQSSKYNPIYLQERIDNFISGLDELLEGLDDESFENYRSGLMAKLLEKDPSLTYESNRFWNQITDKRYMFDQSQKE 569 (640)
Q Consensus 490 ~~~~vqs~~~~~~~~~~~i~~fl~~~~~~l~~~se~ef~~~k~~l~~~~~~~~~sl~~~~~~~w~~i~~~~~~f~~~~~~ 569 (640)
+.+++.. +|+.+.+.++.+.+++.+..++++++||+++|..+++++....++....+..+...++..+...+ .+++
T Consensus 320 ~~i~~~~---~~~~~~~~~~~i~~~l~~l~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~ 395 (446)
T 1pp9_A 320 LGAHFVC---DHMSIDDMMFVLQGQWMRLCTSATESEVLRGKNLLRNALVSHLDGTTPVCEDIGRSLLTYGRRIP-LAEW 395 (446)
T ss_dssp EEEEEEE---CTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHTSSCCC-HHHH
T ss_pred EEEEEEE---CHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCCCCC-HHHH
Confidence 4455553 56677777777777776655569999999999999999988778887777776665533223333 4678
Q ss_pred HHHHhcCCHHHHHHHHHHHcccCCCCcceEEEEEecCCCCcc
Q 006560 570 AEDLKSIKKNDVISWYKTYLQQWSPKCRRLAVRVWGCNTNIK 611 (640)
Q Consensus 570 ~~~l~~vT~~dv~~~~~~~l~~~~~~~~~l~i~v~g~~~~~~ 611 (640)
.+.|++||++||++++++|+.++ ..++.++|+...++
T Consensus 396 ~~~i~~vt~edv~~~a~~~~~~~-----~~~~~~~g~~~~~~ 432 (446)
T 1pp9_A 396 ESRIAEVDARVVREVCSKYFYDQ-----CPAVAGFGPIEQLP 432 (446)
T ss_dssp HHHHHTCCHHHHHHHHHHHTTTC-----CCEEEEEESCTTSC
T ss_pred HHHHHcCCHHHHHHHHHHHcCCC-----CcEEEEECCcccCc
Confidence 89999999999999999999863 46788899876543
No 15
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis}
Probab=99.97 E-value=6.8e-30 Score=275.27 Aligned_cols=397 Identities=10% Similarity=-0.040 Sum_probs=282.8
Q ss_pred CeEeecCCceEEEeeccCcccCcceEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhc-------cc--ccccEE
Q 006560 191 PTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELNEIIYQ-------AS--VAKLET 261 (640)
Q Consensus 191 P~~~~~~~g~~v~~~~d~~f~~P~~~i~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~-------a~--~ag~~~ 261 (640)
.+..+..||+++|+.+++.+..|.+.+.+.++.|...+++...++++++.+|+..+....... .. ..|.++
T Consensus 26 ~~~~~L~NGl~v~~~~~~~~~~~~v~~~l~~~~Gs~~e~~~~~Glahllehmlf~GT~~~~~~~~~~~~~~~~~~~G~~~ 105 (492)
T 3go9_A 26 WQQGKLDNGFSWQLLATPQRPSDRIELRLIVNTGSLSENTQEVGFAHLLPRLALMSSASFTPAQLQSLWQQGIDNERPLP 105 (492)
T ss_dssp EEEEECTTSCEEEEEECTTSTTSCEEEEEEESCCGGGCCGGGTTHHHHHHHHHHHCCTTCCHHHHHHHHHTCSCSSSCCC
T ss_pred eEEEECCCCCEEEEEECCCCCCCeEEEEEEEecccCCCCCCCcCHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCc
Confidence 456778999999999987766789999999998887788888999999999998765432111 11 135566
Q ss_pred EEEEecceeEEEEeecC---CCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhccccCccchHHHHHHHhccCC---
Q 006560 262 SVSIFSDKLELKVYGFN---DKLPVLLSKILAIAKSFLPSDDRFKVIKEDVVRTLKNTNMKPLSHSSYLRLQVLCQS--- 335 (640)
Q Consensus 262 ~~~~~~~g~~i~~~g~s---~~l~~~l~~~~~~l~~~~~~~~~f~~~k~~~~~~l~~~~~~p~~~a~~~~~~~l~~~--- 335 (640)
+.+.+.+...+.++..+ ++++.+|+++.+.+.+|.|++++|+++|..+++.++...++|...++. ..+++.
T Consensus 106 na~t~~d~t~y~~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~er~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 182 (492)
T 3go9_A 106 PAITSYDFTLYSLSLPNNRPDLLKDALAWLSDTAGNLAVSEQTVNAALNTATDPIATFPQNIQEPWWR---YRLKGSSLI 182 (492)
T ss_dssp SEEECSSCEEEEEEECTTCHHHHHHHHHHHHHHHHCCCCSHHHHHHHHTCSSCCEEESSSCTTCHHHH---HHTTTSTTT
T ss_pred ceEeCCCeEEEEEECCCCcHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcccchhhHHHH---HHhccCCcc
Confidence 67777788888888888 569999999999999999999999999987777777666677654433 222221
Q ss_pred CCCHHHHHhhhccCCHHHHHHHHHHHHhcceeEEEEeccCCHHHHHHHHHHHHhhcCCCCCCccccccceEEEcCCCCeE
Q 006560 336 FYDVDEKLSILHGLSLADLMAFIPELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSVQPLPIEMRHQECVICLPSGANL 415 (640)
Q Consensus 336 ~~~~~~~~~~l~~it~ed~~~~~~~~~~~~~~~~~v~Gni~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~ 415 (640)
.++.. .+.++.+|.+|+++||+++|.+.++.++|+||++.+++.++++++++.++.++.+....+. ......+ ..
T Consensus 183 ~~~~~--~~~i~~it~~dL~~fy~~~Y~p~n~~l~vvGdvd~~~~~~~i~~~f~~~~~~~~~~~~~~~--~~~~~~~-~~ 257 (492)
T 3go9_A 183 GHDPG--QPVTQPVDVEKLKQFYQQWYTPDAMTLYVVGNVDSRSIAAQISKAFSELKGKRTAPAAVAT--LAPLPPE-PV 257 (492)
T ss_dssp TCCTT--CCCCSSCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTCCCCCSSCCCCCC--CCCCCSS-CE
T ss_pred cCCCc--hhhhhcCCHHHHHHHHHHhcCcCceEEEEEcCCCHHHHHHHHHHHhhcCCCCCCCCCCCCC--CCCCCCC-ce
Confidence 12222 2678999999999999999999999999999999999999999988888754321111111 0111112 22
Q ss_pred EEEeecCCCCCCCeEEEEEEecccccCcch--HHHHHHHHHHHHHhchhhHHHHHh--hcccceEEEeeeeeeCceeeEE
Q 006560 416 VRNVSVKNKCETNSVIELYFQIEQEKGMEL--TRLKALIDLFDEILEEPFFNQLRT--KEQLGYVVECSPRVTYRVFGFC 491 (640)
Q Consensus 416 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~~~ll~~~l~s~lf~~LR~--k~~LgY~v~s~~~~~~~~~~~~ 491 (640)
. .+.. ...++.+.+.|..+....++. ........+++.+|+++++.+||+ +++++|+++++.....+ ...
T Consensus 258 ~-~~~~---~~~q~~v~l~~~~~~~~~~d~~~l~~~~~~~v~~~iLg~~L~~~lre~~~~gl~y~~~s~~~~~~~--~~~ 331 (492)
T 3go9_A 258 S-LMNE---QAAQDTLSLMWDTPWHPIQDSMALSRYWRSDLAREALFWHIKQVLEKNNQKNLKLGFDCRVQYQRA--QCA 331 (492)
T ss_dssp E-EEES---SCSSEEEEEEEEEECCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCTTCEEEEEEEEETTEE--EEE
T ss_pred E-EEcC---CCCCcEEEEEecCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCchhhhhhc--ceE
Confidence 2 1222 246777777777432111221 124556688999999999999999 89999999997654332 233
Q ss_pred EEEEcCCCChhhHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhcCCC-----CChhHHHHHHHHHHhcccc---c
Q 006560 492 FCIQSSKYNPIYLQERIDNFISGLDELL-EGLDDESFENYRSGLMAKLLEKD-----PSLTYESNRFWNQITDKRY---M 562 (640)
Q Consensus 492 ~~vqs~~~~~~~~~~~i~~fl~~~~~~l-~~~se~ef~~~k~~l~~~~~~~~-----~sl~~~~~~~w~~i~~~~~---~ 562 (640)
+++++ .++.+.+.++.+.+++.+.. .++|++||+++|+.+++++.... .+....++.++..+..+.. .
T Consensus 332 ~~i~~---~~~~~~~a~~~i~~el~~l~~~g~te~EL~~aK~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 408 (492)
T 3go9_A 332 IHLNT---PVENLTANMTFVARELAALRANGLSQAEFDALMTQKNDQLSKLFATYARTDTDILMSQRLRSQQSGVVDIAP 408 (492)
T ss_dssp EEEEE---CGGGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHTHHHHHHTCCHHHHHHHHHHHHHHTCCCBCH
T ss_pred EEEEc---CcccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcCCH
Confidence 55655 46777888888888777665 79999999999999999987653 3455566666655544322 1
Q ss_pred cccchHhHHHHhcCCHHHHHHHHHHHcccCCCCcceEEEEEecCCCCc
Q 006560 563 FDQSQKEAEDLKSIKKNDVISWYKTYLQQWSPKCRRLAVRVWGCNTNI 610 (640)
Q Consensus 563 f~~~~~~~~~l~~vT~~dv~~~~~~~l~~~~~~~~~l~i~v~g~~~~~ 610 (640)
-++.+.+.+.|++||.+||++++++++.++ ..++|+|++...
T Consensus 409 ~~~~~~~~~~i~~vT~edV~~~a~~~l~~~------~~~vvvg~~~~~ 450 (492)
T 3go9_A 409 EQYQKLRQAFLSGLTLAELNRELKQQLSQD------TTLVLMQPKGEP 450 (492)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHTSC------CEEEEEEETTSC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhCCC------CeEEEEcCCCCC
Confidence 223334456799999999999999999852 345555555444
No 16
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=99.94 E-value=2.1e-25 Score=260.47 Aligned_cols=402 Identities=9% Similarity=-0.010 Sum_probs=288.2
Q ss_pred eEeecCCceEEEeeccCcccCcceEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHhhhh----hcc--cccccEEEEEE
Q 006560 192 TCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELNEII----YQA--SVAKLETSVSI 265 (640)
Q Consensus 192 ~~~~~~~g~~v~~~~d~~f~~P~~~i~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~----~~a--~~ag~~~~~~~ 265 (640)
+....+||++|++.+++. .|++.+.+.+..|...+.....|+++++.+|+..+..... +.. ...|.+++.+.
T Consensus 22 ~~~~L~NGl~v~~~~~~~--~~~~~~~l~v~~Gs~~e~~~~~GlAH~lEHmlf~Gt~~~p~~~~~~~~l~~~Gg~~NA~T 99 (939)
T 1q2l_A 22 QAIRLDNGMVVLLVSDPQ--AVKSLSALVVPVGSLEDPEAYQGLAHYLEHMSLMGSKKYPQADSLAEYLKMHGGSHNAST 99 (939)
T ss_dssp EEEEETTSCEEEEEECTT--CSSEEEEEEESCCGGGCCGGGTTHHHHHHHHTTSCBSSSCSTTHHHHHHHTTTCEEEEEE
T ss_pred EEEEecCCCEEEEEECCC--CCceEEEEEeCccCCCCCCCCCchHHHHHHHHccCCCCCCCcchHHHHHHHcCCcceEEE
Confidence 566789999999999886 6789999999988777777788999999999976543321 111 23377888888
Q ss_pred ecceeEEEEeecCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhccccCccchHHHHHHHhccCCC---CCHHHH
Q 006560 266 FSDKLELKVYGFNDKLPVLLSKILAIAKSFLPSDDRFKVIKEDVVRTLKNTNMKPLSHSSYLRLQVLCQSF---YDVDEK 342 (640)
Q Consensus 266 ~~~g~~i~~~g~s~~l~~~l~~~~~~l~~~~~~~~~f~~~k~~~~~~l~~~~~~p~~~a~~~~~~~l~~~~---~~~~~~ 342 (640)
+.+...+.++..+++++.+|..+.+.+.+|.|+++.|+++|..+..+++...++|...+.+.+...+++.+ +...|.
T Consensus 100 ~~d~T~y~~~~~~~~l~~~L~~l~d~~~~p~f~~~~~~~Er~~v~~E~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~G~ 179 (939)
T 1q2l_A 100 APYRTAFYLEVENDALPGAVDRLADAIAEPLLDKKYAERERNAVNAELTMARTRDGMRMAQVSAETINPAHPGSKFSGGN 179 (939)
T ss_dssp CSSCEEEEEEECGGGHHHHHHHHHHHHHCBCCCSTTHHHHHHHHHHHHHHHTTSHHHHHHHHHHHSSCTTSGGGSCCSCC
T ss_pred CCCcEEEEEEeCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHhcCCCCCCccCCCCC
Confidence 88888888888899999999999999999999999999999999999999888888888888888888642 345678
Q ss_pred Hhhhcc----CCHHHHHHHHHHHHhcceeEEEEeccCCHHHHHHHHHHHHhhcCCCCCCccccccceEEEcCCCCeEEEE
Q 006560 343 LSILHG----LSLADLMAFIPELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSVQPLPIEMRHQECVICLPSGANLVRN 418 (640)
Q Consensus 343 ~~~l~~----it~ed~~~~~~~~~~~~~~~~~v~Gni~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~ 418 (640)
.++|+. ++.+++++||+++|.+.++.++|+||++.+++.++++++++.++.++.+....+. ... .+........
T Consensus 180 ~~~l~~~~~~~~~~~l~~f~~~~Y~p~n~~l~v~G~~~~~~l~~~v~~~f~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~ 257 (939)
T 1q2l_A 180 LETLSDKPGNPVQQALKDFHEKYYSANLMKAVIYSNKPLPELAKMAADTFGRVPNKESKKPEITV-PVV-TDAQKGIIIH 257 (939)
T ss_dssp HHHHSCBTTBCHHHHHHHHHHHHCCTTTCEEEEEESSCHHHHHHHHHHTGGGSCCCCCCCCCCCS-CSC-CGGGSSEEEE
T ss_pred HHHHhcCCCchHHHHHHHHHHhccCHhheEEEEEcCCCHHHHHHHHHHHhhhhccCCCCCCCCCC-CCC-CHHHcCEEEE
Confidence 899998 9999999999999999999999999999999999999988887764322111110 000 1111112211
Q ss_pred eecCCCCCCCeEEEEEEecccccCc-chHHHHHHHHHHHHHhchhhHHHHHhhcccceEEEeeeeee--CceeeEEEEEE
Q 006560 419 VSVKNKCETNSVIELYFQIEQEKGM-ELTRLKALIDLFDEILEEPFFNQLRTKEQLGYVVECSPRVT--YRVFGFCFCIQ 495 (640)
Q Consensus 419 ~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~ll~~~l~s~lf~~LR~k~~LgY~v~s~~~~~--~~~~~~~~~vq 495 (640)
.. +...++.+.+.|.+|..... +.....++..+|++..+++|+.+|| +++++|+++++.... .....+.+++.
T Consensus 258 ~~---~~~~~~~l~i~~~~~~~~~~~~~~~~~~l~~lLg~~~~s~L~~~L~-~~gl~~~~~a~~~~~~~~~~g~f~i~~~ 333 (939)
T 1q2l_A 258 YV---PALPRKVLRVEFRIDNNSAKFRSKTDELITYLIGNRSPGTLSDWLQ-KQGLVEGISANSDPIVNGNSGVLAISAS 333 (939)
T ss_dssp EC---CSSCCCEEEEEEEEECCGGGGGGCHHHHHHHHHHCCCTTSHHHHHH-HTTCEEEEEEEEESSTTSSEEEEEEEEE
T ss_pred EE---eCCCCcEEEEEEEcCChHHhhhhCHHHHHHHHhcCCCCCcHHHHHH-HcCCchheeeccccccCCCceEEEEEEE
Confidence 21 23456667777774321111 1223456667777777789999999 579999999875322 22333444554
Q ss_pred cCCCChhhHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhcCCC-CChhHHHHHHHHHHhccccccccchHhHHHH
Q 006560 496 SSKYNPIYLQERIDNFISGLDELL-EGLDDESFENYRSGLMAKLLEKD-PSLTYESNRFWNQITDKRYMFDQSQKEAEDL 573 (640)
Q Consensus 496 s~~~~~~~~~~~i~~fl~~~~~~l-~~~se~ef~~~k~~l~~~~~~~~-~sl~~~~~~~w~~i~~~~~~f~~~~~~~~~l 573 (640)
......+.+.+.++.+..++.... .+++++||+++|+.+..++.... ++....+..+...+.. ++.+........+
T Consensus 334 ~~~~~~~~~~~~~~~i~~~l~~l~~~g~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~i 411 (939)
T 1q2l_A 334 LTDKGLANRDQVVAAIFSYLNLLREKGIDKQYFDELANVLDIDFRYPSITRDMDYVEWLADTMIR--VPVEHTLDAVNIA 411 (939)
T ss_dssp ECHHHHHTHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHSCCCCCSHHHHHHHHHHHTT--SCGGGTTTTTTCC
T ss_pred EChhhhhhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcccccCCCChHHHHHHHHHHhhc--CCHHHHhcCchhh
Confidence 321001466666777766666554 68999999999999999997664 5555566666555543 3333333445678
Q ss_pred hcCCHHHHHHHHHHHcccCCCCcceEEEEEecCCCC
Q 006560 574 KSIKKNDVISWYKTYLQQWSPKCRRLAVRVWGCNTN 609 (640)
Q Consensus 574 ~~vT~~dv~~~~~~~l~~~~~~~~~l~i~v~g~~~~ 609 (640)
+++|+++|.++++. +.++ .+.+.++|+...
T Consensus 412 ~~vt~~~i~~~~~~-l~~~-----~~~~~~~~p~~~ 441 (939)
T 1q2l_A 412 DRYDAKAVKERLAM-MTPQ-----NARIWYISPKEP 441 (939)
T ss_dssp CCCCHHHHHHHHHH-CSGG-----GCEEEEECTTCC
T ss_pred hccCHHHHHHHHHh-cCHH-----HcEEEEEcCCCC
Confidence 99999999999986 6553 355666776543
No 17
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Probab=99.91 E-value=1.2e-22 Score=235.32 Aligned_cols=402 Identities=9% Similarity=0.032 Sum_probs=262.3
Q ss_pred CeEeecCCceEEEeeccCcccCcceEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHhhhh----hcccc---cccEEEE
Q 006560 191 PTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELNEII----YQASV---AKLETSV 263 (640)
Q Consensus 191 P~~~~~~~g~~v~~~~d~~f~~P~~~i~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~----~~a~~---ag~~~~~ 263 (640)
+...+..||+++++.+++.-..-.+.+.+.+.++ .+...++++++.+++..+..... +.... .|..++.
T Consensus 87 ~~~~~l~nGl~vl~i~~~~~~~~~~~f~vg~~te----p~~~~GvAH~lEHmlf~GS~k~p~~e~~~~l~~~slG~~lNA 162 (1193)
T 3s5m_A 87 TVYQHKKAKTQVISLGTNDPLDVEQAFAFYVKTL----THSGKGIPHILEHSVLSGSKNYNYKNSIGLLEKGTLHTHLNA 162 (1193)
T ss_dssp EEEEETTTCCEEEEEEECCTTCCCEEEEEEEECC----CSSSSCHHHHHHHHTTSCBTTBCCTTHHHHHHHSCCEEEEEE
T ss_pred eEEEECCCCCEEEEEECCCCCeEEEEEEEEECCC----CCCCchHHHHHHHHHhCCCCCCChhhHHHHHHHhccCceEEe
Confidence 4556779999999999876210013345555554 33446889999999876554321 11111 2445666
Q ss_pred EEecceeEEEEeecC-CCHHHHHHHHHHHhccCCCCHHH--HHHH-----------------------------HHHHHH
Q 006560 264 SIFSDKLELKVYGFN-DKLPVLLSKILAIAKSFLPSDDR--FKVI-----------------------------KEDVVR 311 (640)
Q Consensus 264 ~~~~~g~~i~~~g~s-~~l~~~l~~~~~~l~~~~~~~~~--f~~~-----------------------------k~~~~~ 311 (640)
..+.+.....+...+ ++++.+|..+++.+.+|.++++. |.++ |..+.+
T Consensus 163 ~T~~D~T~Y~~~~~~~~~l~~~L~l~~D~v~~P~l~~~~~~F~qE~~~~E~e~~~~~Er~~~~~~~~~~~~l~~k~vV~~ 242 (1193)
T 3s5m_A 163 YTFNDRTVYMAGSMNNKDFFNIMGVYMDSVFQPNVLENKYIFETEGWTYEVEKLKEDEKGKAEIPQMKDYKVSFNGIVYN 242 (1193)
T ss_dssp EECSSEEEEEEEESSHHHHHHHHHHHHHHHHSBGGGTCHHHHHHHTCEEEEEECCTTTTTCTTSCEETTEEEEEECHHHH
T ss_pred EEcCCeEEEEEEecCHHHHHHHHHHHHHHHhCCCCccccchhhhhhhhhhhhccchhhhccccccccccchhhHHHHHHH
Confidence 667777777887777 78999999999999999998887 8776 468889
Q ss_pred HHhccccCccchHHHHHHHhccCCC---CCHHHHHhhhccCCHHHHHHHHHHHHhcceeEEEEeccCCHHHHHHHHHHHH
Q 006560 312 TLKNTNMKPLSHSSYLRLQVLCQSF---YDVDEKLSILHGLSLADLMAFIPELRSQLYIEGLCHGNLSQEEAIHISNIFK 388 (640)
Q Consensus 312 ~l~~~~~~p~~~a~~~~~~~l~~~~---~~~~~~~~~l~~it~ed~~~~~~~~~~~~~~~~~v~Gni~~~~~~~l~~~~~ 388 (640)
+++...++|...+.+.+...+|+.+ ++..|..++|..+|.+|+++||+++|+|.++.++++||++.+++.+++++++
T Consensus 243 E~k~~~~~p~~~~~~~l~~~lf~~hpY~~~~~G~~e~I~~lt~edl~~F~~~~Y~P~Na~l~v~Gdid~~~~~~~v~~~f 322 (1193)
T 3s5m_A 243 EMKGALSSPLEDLYHEEMKYMFPDNVHSNNSGGDPKEITNLTYEEFKEFYYKNYNPKKVKVFFFSKNNPTELLNFVDQYL 322 (1193)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHCTTSGGGSCTTCCHHHHTTCCHHHHHHHHHHHSCTTTCEEEEEESSCTHHHHHHHHHHH
T ss_pred HHHHhhCCHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHhhCCHHHHHHHHHHhcCccceEEEEEecCCHHHHHHHHHHHh
Confidence 9998888999999999999998753 4567889999999999999999999999999999999999999999999998
Q ss_pred hhcCCCCCCc---cccccceEEEcCCCCeEE-EEeecCCCCCCCeEEEEEEecccc-----------------------c
Q 006560 389 SIFSVQPLPI---EMRHQECVICLPSGANLV-RNVSVKNKCETNSVIELYFQIEQE-----------------------K 441 (640)
Q Consensus 389 ~~l~~~~~~~---~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~-----------------------~ 441 (640)
+.++.++.+. ...+.. ....+...+ ..... .+...++.+.+.|.+|.. .
T Consensus 323 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~-~~~~~q~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~y~~ 398 (1193)
T 3s5m_A 323 GQLDYSKYRDDAVESVEYQ---TYKKGPFYIKKKYGD-HSEEKENLVSVAWLLNPKVDKTNNHNNNHSNNQSSENNGYSN 398 (1193)
T ss_dssp TTCCGGGCCCCCCCCCCCC---BCCCCCEEEEEEEEC-CCSSCCEEEEEEEESSCBCC----------------------
T ss_pred ccCCCCCCCcccccccCCC---CCCCCCeEEEEecCC-CCCccccEEEEEEEecCccccccccccccccccccccccccc
Confidence 8887543211 001100 001111111 01111 112345666666663210 1
Q ss_pred Ccch-------HHHHHHHH----HHHHHhchhhHHHHHhhcccceEEE-eeeeeeCceeeEEEEEEcCC-CC-----h--
Q 006560 442 GMEL-------TRLKALID----LFDEILEEPFFNQLRTKEQLGYVVE-CSPRVTYRVFGFCFCIQSSK-YN-----P-- 501 (640)
Q Consensus 442 ~~~~-------~~~~~~~~----ll~~~l~s~lf~~LR~k~~LgY~v~-s~~~~~~~~~~~~~~vqs~~-~~-----~-- 501 (640)
|..+ ..+...+. +|++..+||||++||+ +||||.|+ +++......+.+.++++... .+ +
T Consensus 399 ~~~~~~~~~~~~~d~~al~vL~~iLggg~sSrL~~~L~e-~gLa~~v~~~~~~~~~~~~~f~i~~~g~~~~~~~~~~~~~ 477 (1193)
T 3s5m_A 399 GSHSSDLSLENPTDYFVLLIINNLLIHTPESVLYKALTD-CGLGNNVIDRGLNDSLVQYIFSIGLKGIKRNNEKIKNFDK 477 (1193)
T ss_dssp CCCCSTTCCCSHHHHHHHHHHHHHHHSSTTSHHHHHHHH-HCSCSEEEEEEEECSSSSCEEEEEEEEECTTCTTCSCGGG
T ss_pred ccccccccccCccHHHHHHHHHHHHCCCCCCHHHHHHHh-cCCeeeecccccccccCCcEEEEEEecCChhhccccchhh
Confidence 1101 34444444 4445558999999997 69999998 56555555455566654321 11 2
Q ss_pred --hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC-CCChhHH--HHHHHH-HHhccccccc--cchHhHHHH
Q 006560 502 --IYLQERIDNFISGLDELLEGLDDESFENYRSGLMAKLLEK-DPSLTYE--SNRFWN-QITDKRYMFD--QSQKEAEDL 573 (640)
Q Consensus 502 --~~~~~~i~~fl~~~~~~l~~~se~ef~~~k~~l~~~~~~~-~~sl~~~--~~~~w~-~i~~~~~~f~--~~~~~~~~l 573 (640)
+++.+.|.+.++++.+ +++++++++++|+.+..++++. ..+..+. +..... .+..++ .+. ..+..++.+
T Consensus 478 ~~~~~~~~I~~~L~~l~~--~gi~~~ele~a~~~le~~~re~~~~~~~gl~~~~~~~~~w~~~~d-p~~~l~~~~~l~~l 554 (1193)
T 3s5m_A 478 VHYEVEDVIMNALKKVVK--EGFNKSAVEASINNIEFILKEANLKTSKSIDFVFEMTSKLNYNRD-PLLIFEFEKYLNIV 554 (1193)
T ss_dssp HHHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHTTCC-TTTTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHH
Confidence 3444555555544433 8999999999999999888763 2222222 112222 233343 222 123455556
Q ss_pred hcCC---HHHHHHHHHHHcccCCCCcceEEEEEecCC
Q 006560 574 KSIK---KNDVISWYKTYLQQWSPKCRRLAVRVWGCN 607 (640)
Q Consensus 574 ~~vT---~~dv~~~~~~~l~~~~~~~~~l~i~v~g~~ 607 (640)
+..+ +.++.+.+++||.. +..++++.+.+++
T Consensus 555 ~~~~~~~~~~~~~li~~yll~---n~~~~~~~~~P~~ 588 (1193)
T 3s5m_A 555 KNKIKNEPMYLEKFVEKHFIN---NAHRSVILLEGDE 588 (1193)
T ss_dssp HHHHHHSTTHHHHHHHHHTTT---CCCEEEEEEEEES
T ss_pred HHHhhcChHHHHHHHHHHhcc---CCceEEEEEEcCC
Confidence 5543 45999999999964 2457888888765
No 18
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Probab=99.90 E-value=2.1e-22 Score=236.32 Aligned_cols=399 Identities=10% Similarity=0.011 Sum_probs=274.4
Q ss_pred CeEeecCCceEEEeeccCcccCcceEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHhhhh----hcc--cccccEEEEE
Q 006560 191 PTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELNEII----YQA--SVAKLETSVS 264 (640)
Q Consensus 191 P~~~~~~~g~~v~~~~d~~f~~P~~~i~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~----~~a--~~ag~~~~~~ 264 (640)
.+..+.+||++|++.+++. .|++.+.+.+..|...+.....++++++..|+..+..+.. +.. ...|..++.+
T Consensus 35 ~~~~~L~NGl~v~~~~~~~--~~~~~~~l~v~~Gs~~ep~~~~GlAH~lEHmlf~GT~~~p~~~~~~~~l~~~Gg~~NA~ 112 (990)
T 3cww_A 35 YRGLELANGIKVLLISDPT--TDKSSAALDVHIGSLSDPPNIAGLSHFLQHMLFLGTKKYPKENEYSQFLSEHAGSSNAF 112 (990)
T ss_dssp EEEEEETTCCEEEEEECTT--CSEEEEEEEESCCGGGSCTTSTTHHHHHHHHGGGCBSSSCSTTHHHHHHHTTTCEEEEE
T ss_pred eEEEEeCCCCEEEEEECCC--CCcEEEEEEecccCCCCCCCCCChHHHHHHHHhcCCCCCCCcchHHHHHHHcCCceeEE
Confidence 3567789999999999886 6789999999988777777788999999999876543321 111 1235677777
Q ss_pred EecceeEEEEeecCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhccccCccchHHHHHHHhccCCC---CCHHH
Q 006560 265 IFSDKLELKVYGFNDKLPVLLSKILAIAKSFLPSDDRFKVIKEDVVRTLKNTNMKPLSHSSYLRLQVLCQSF---YDVDE 341 (640)
Q Consensus 265 ~~~~g~~i~~~g~s~~l~~~l~~~~~~l~~~~~~~~~f~~~k~~~~~~l~~~~~~p~~~a~~~~~~~l~~~~---~~~~~ 341 (640)
.+.+.....+...+++++.+|..+.+.+.+|.|+++.|++++..+..+++....+|...+...+...+++.+ +...|
T Consensus 113 T~~d~T~y~~~~~~~~l~~~l~~~~d~~~~p~f~~~~~~~E~~~V~~E~~~~~~~~~~~~~~~~~~~~~~~~py~~~~~G 192 (990)
T 3cww_A 113 TSGEHTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAKDREVNAVDSEHEKNVMNDAWRLFQLEKATGNPKHPFSKFGTG 192 (990)
T ss_dssp ECSSCEEEEEEEEGGGHHHHHHHHHGGGTCBCCCHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHTSCTTSGGGCCCSC
T ss_pred ECCCceEEEEEeCHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHhcCCCCCcccCCCC
Confidence 777778888888899999999999999999999999999999999999998777887778788777777543 34456
Q ss_pred HHhhhccC-------CHHHHHHHHHHHHhcceeEEEEeccCCHHHHHHHHHHHHhhcCCCCCCccccccceEEEcCCCCe
Q 006560 342 KLSILHGL-------SLADLMAFIPELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFSVQPLPIEMRHQECVICLPSGAN 414 (640)
Q Consensus 342 ~~~~l~~i-------t~ed~~~~~~~~~~~~~~~~~v~Gni~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~ 414 (640)
..+.|..+ +.+++++||+++|.+.++.++|+||++.+++.++++++++.++.++.+...++.. .........
T Consensus 193 ~~~~l~~~~~~~~~~~~~~l~~f~~~~Y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~-~~~~~~~~~ 271 (990)
T 3cww_A 193 NKYTLETRPNQEGIDVRQELLKFHSAYYSSNLMAVVVLGRESLDDLTNLVVKLFSEVENKNVPLPEFPEH-PFQEEHLKQ 271 (990)
T ss_dssp CHHHHTHHHHHTTCCHHHHHHHHHHHHCCGGGEEEEEEESSCHHHHHHHHHHHHTTSCCCCCCCCCCCSC-SSCGGGSSE
T ss_pred CHHHHhhccccccchHHHHHHHHHHHhCCHhheEEEEEcCCCHHHHHHHHHHHhcCCccCCCCCCCCCCC-CCChHHcCe
Confidence 77888877 9999999999999999999999999999999999999888877653321111100 000000012
Q ss_pred EEEEeecCCCCCCCeEEEEEEecccccC-cchHHHHHHHHHHHHHhchhhHHHHHhhcccceEEEeeeeee-CceeeEEE
Q 006560 415 LVRNVSVKNKCETNSVIELYFQIEQEKG-MELTRLKALIDLFDEILEEPFFNQLRTKEQLGYVVECSPRVT-YRVFGFCF 492 (640)
Q Consensus 415 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~ll~~~l~s~lf~~LR~k~~LgY~v~s~~~~~-~~~~~~~~ 492 (640)
.+ ... +...++.+.+.|.+|.... .+.....++..+|++...+.++.+||+ ++++|.++++.... .+...+.+
T Consensus 272 ~~-~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~lLg~~~~~sl~~~Lr~-~g~~~~~~a~~~~~~~~~~~f~i 346 (990)
T 3cww_A 272 LY-KIV---PIKDIRNLYVTFPIPDLQKYYKSNPGHYLGHLIGHEGPGSLLSELKS-KGWVNTLVGGQKAGARGFMFFII 346 (990)
T ss_dssp EE-EEC---CSSSCCEEEEEEEECCCGGGTTTCHHHHHHHHHTCCSTTCHHHHHHH-TTSCSCEEEEEEEEETTEEEEEE
T ss_pred EE-EEE---ECCCCcEEEEEEEcCChhhhhhhCHHHHHHHHhcCCCCCcHHHHHHH-CCCcceeeeccccCCCCccEEEE
Confidence 22 121 2234566777777322110 112233444455543222447889995 69999999886643 33344445
Q ss_pred EEEcCCCCh--hhHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhcCC-CCChhHHHHHHHHHHhccccccccchH
Q 006560 493 CIQSSKYNP--IYLQERIDNFISGLDELL-EGLDDESFENYRSGLMAKLLEK-DPSLTYESNRFWNQITDKRYMFDQSQK 568 (640)
Q Consensus 493 ~vqs~~~~~--~~~~~~i~~fl~~~~~~l-~~~se~ef~~~k~~l~~~~~~~-~~sl~~~~~~~w~~i~~~~~~f~~~~~ 568 (640)
++... ++ +.+.+.++.+...+.... .++++++|+++|......+... ..+..+.+..+...+.. ++.+....
T Consensus 347 ~~~~~--~~g~~~~~~~~~~i~~~l~~l~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~ 422 (990)
T 3cww_A 347 NVDLT--EEGLLHVEDIILHMFQYIQKLRAEGPQEWVFQELKDLNAVAFRFKDKERPRGYTSKIAGILHY--YPLEEVLT 422 (990)
T ss_dssp EEECC--HHHHHTHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHTTT--SCGGGTTT
T ss_pred EEEEC--hHHhhhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcccCCcCCHHHHHHHHHHHHhh--CCHHHHhc
Confidence 55532 22 366666666666666544 7999999999988777776643 44555566555333322 33333334
Q ss_pred hHHHHhcCCHHHHHHHHHHHcccCCCCcceEEEEEecCC
Q 006560 569 EAEDLKSIKKNDVISWYKTYLQQWSPKCRRLAVRVWGCN 607 (640)
Q Consensus 569 ~~~~l~~vT~~dv~~~~~~~l~~~~~~~~~l~i~v~g~~ 607 (640)
..+.+.++|+++|.++++. +.++ ...+.++|+.
T Consensus 423 ~~~~i~~~t~~~i~~~~~~-l~~~-----~~~~~~~~p~ 455 (990)
T 3cww_A 423 AEYLLEEFRPDLIEMVLDK-LRPE-----NVRVAIVSKS 455 (990)
T ss_dssp TTTCCCCCCHHHHHHHHTT-CSGG-----GCEEEEECGG
T ss_pred cchhhhcCCHHHHHHHHHh-cCHh-----HEEEEEEcCC
Confidence 4567889999999999985 5553 2245555653
No 19
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=99.90 E-value=2.4e-22 Score=235.62 Aligned_cols=392 Identities=11% Similarity=0.038 Sum_probs=260.0
Q ss_pred EeecCCceEEEeeccCcccCcceEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHhhhh----hccc---ccccEEEEEE
Q 006560 193 CIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELNEII----YQAS---VAKLETSVSI 265 (640)
Q Consensus 193 ~~~~~~g~~v~~~~d~~f~~P~~~i~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~----~~a~---~ag~~~~~~~ 265 (640)
..+..||++|++.+++.. |+ .+.+-+..+. ....++++++.+|+..+..... +... ..|..++...
T Consensus 40 ~~~l~nGl~v~~~~~~~~--~~-~~~vg~~~e~----~~~~GlAH~lEHm~f~Gt~~~p~~~~~~~~l~~~~g~~~NA~T 112 (995)
T 2fge_A 40 FKHKKTGCEVMSVSNEDE--NK-VFGVVFRTPP----KDSTGIPHILQHSVLCGSRKYPVKEPFVELLKGSLHTFLNAFT 112 (995)
T ss_dssp EEETTTCCEEEEEECSCS--SE-EEEEEEECCC----SSSSCHHHHHHHHTTSCBTTBCSSCHHHHHHHHCCEEEECCEE
T ss_pred EEECCCCCEEEEEEcCCC--cc-EEEEEeCCCC----cCCCChHHHHHHHHhCCCCCCCCccHHHHHHHhccCCCceeeE
Confidence 356789999999998863 33 4555555542 3346899999999866544321 1111 1244455555
Q ss_pred ecceeEEEEeec-CCCHHHHHHHHHHHhccCCC--CHHHHHHH---------------HHHHHHHHhccccCccchHHHH
Q 006560 266 FSDKLELKVYGF-NDKLPVLLSKILAIAKSFLP--SDDRFKVI---------------KEDVVRTLKNTNMKPLSHSSYL 327 (640)
Q Consensus 266 ~~~g~~i~~~g~-s~~l~~~l~~~~~~l~~~~~--~~~~f~~~---------------k~~~~~~l~~~~~~p~~~a~~~ 327 (640)
+.+.....+... .+.+..++..+.+.+.+|.+ +++.|+++ |..+.++++...++|...+.+.
T Consensus 113 ~~d~T~y~~~~~~~~~~~~~l~~~~d~~~~p~~~~~~~~~~~E~~~~e~~~~~~~~~~r~vV~~E~~~~~~~p~~~~~~~ 192 (995)
T 2fge_A 113 YPDRTCYPVASTNTKDFYNLVDVYLDAVFFPKCVDDAHTFQQEGWHYELNDPSEDISYKGVVFNEMKGVYSQPDNILGRI 192 (995)
T ss_dssp CSSEEEEEEEESSHHHHHHHHHHHHHHHHSBGGGTSSHHHHHHTCEEECSCTTSCCEEECHHHHHHHHHTTSHHHHHHHH
T ss_pred CCCceEEEEecCCHHHHHHHHHHHHHHHhCCCCCCCHHHHHHhhhhhhcccccccccccchHHHHHHhhhCCHHHHHHHH
Confidence 555555555543 34789999999999999999 99999999 8899999998878899999999
Q ss_pred HHHhccCCC---CCHHHHHhhhccCCHHHHHHHHHHHHhcceeEEEEeccCCHHHHHHHHHHHHhhcC--CCCCCccccc
Q 006560 328 RLQVLCQSF---YDVDEKLSILHGLSLADLMAFIPELRSQLYIEGLCHGNLSQEEAIHISNIFKSIFS--VQPLPIEMRH 402 (640)
Q Consensus 328 ~~~~l~~~~---~~~~~~~~~l~~it~ed~~~~~~~~~~~~~~~~~v~Gni~~~~~~~l~~~~~~~l~--~~~~~~~~~~ 402 (640)
+...+++++ ++..|..+.|+.+|.+++++||+++|.|.++.++|+||++.+++.++++++++.++ ..+.+. ..+
T Consensus 193 ~~~~~~~~~py~~~~~G~~~~i~~~t~~~l~~f~~~~Y~p~n~~l~v~Gd~d~~~~~~~i~~~f~~~~~~~~~~~~-~~~ 271 (995)
T 2fge_A 193 AQQALSPENTYGVDSGGDPKDIPNLTFEEFKEFHRQYYHPSNARIWFYGDDDPVHRLRVLSEYLDMFEASPSPNSS-KIK 271 (995)
T ss_dssp HHHHHCTTSGGGSCTTCCTTTGGGCCHHHHHHHHHHHSSGGGEEEEEEESSCHHHHHHHHHHHHTTCCCCSHHHHS-CCC
T ss_pred HHHHhCCCCCCCCCCCCChHhhhhcCHHHHHHHHHHhCCccceEEEEEcCCCHHHHHHHHHHHHhhCCccccCCCc-ccC
Confidence 999998643 45668899999999999999999999999999999999999999999999887776 321000 001
Q ss_pred cceEEEcCCCCeEEEEeec--CCCCCCCeEEEEEEecccccCcc--hHHHHHHHHHHHH----HhchhhHHHHHhhcccc
Q 006560 403 QECVICLPSGANLVRNVSV--KNKCETNSVIELYFQIEQEKGME--LTRLKALIDLFDE----ILEEPFFNQLRTKEQLG 474 (640)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~--~~~~~~~~~ll~~----~l~s~lf~~LR~k~~Lg 474 (640)
.. ...+........+.. ..+...++.+.+.|. .+.. +..+...+.+|+. ..+|+||.+||++ +++
T Consensus 272 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~a~~vl~~~Lg~~~~S~L~~~l~e~-gl~ 344 (995)
T 2fge_A 272 FQ--KLFSEPVRLVEKYPAGRDGDLKKKHMLCVNWL----LSEKPLDLQTQLALGFLDHLMLGTPASPLRKILLES-GLG 344 (995)
T ss_dssp CC--CCCSSCEEEEEEEECCSSSCGGGCEEEEEEEE----CCSSCCCHHHHHHHHHHHHHHHSSTTSHHHHHHHHT-TSC
T ss_pred CC--CCCCCCceEEEecccCCCCCccCccEEEEEEE----cCCCcCCHHHHHHHHHHHHHHcCCCCCHHHHHHHhc-CCC
Confidence 00 011111111101211 122345777878888 4332 2344444444444 4578999999985 999
Q ss_pred eEEEee-eeeeCceeeEEEEEEcCCCChhhHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhcCCC--CChhH--H
Q 006560 475 YVVECS-PRVTYRVFGFCFCIQSSKYNPIYLQERIDNFISGLDELL-EGLDDESFENYRSGLMAKLLEKD--PSLTY--E 548 (640)
Q Consensus 475 Y~v~s~-~~~~~~~~~~~~~vqs~~~~~~~~~~~i~~fl~~~~~~l-~~~se~ef~~~k~~l~~~~~~~~--~sl~~--~ 548 (640)
|.++++ +........+.+.+.. ++++.+.+.++.+++++.+.. .+++++||+++|+.+..++.... ++..+ .
T Consensus 345 ~~~~~~~~~~~~~~~~f~i~~~~--~~~~~~~~~~~~i~~~l~~l~~~g~~~~el~~ak~~~~~~~~~~~~~~~~~~~~~ 422 (995)
T 2fge_A 345 EALVSSGLSDELLQPQFGIGLKG--VSEENVQKVEELIMDTLKKLAEEGFDNDAVEASMNTIEFSLRENNTGSFPRGLSL 422 (995)
T ss_dssp SEECSCEEECSSSSCEEEEEEEE--ECGGGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCTTSCHHHHH
T ss_pred cceeeccccccccCeEEEEEEEe--CCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhccCCCCccHHHH
Confidence 999876 4433333333333332 256677777777777776655 79999999999999999887543 23332 2
Q ss_pred HHHHHHHHhcc-ccccccchHhHHHHhcCCH----H----HHHHHHHHHcccCCCCcceEEEEEecC
Q 006560 549 SNRFWNQITDK-RYMFDQSQKEAEDLKSIKK----N----DVISWYKTYLQQWSPKCRRLAVRVWGC 606 (640)
Q Consensus 549 ~~~~w~~i~~~-~~~f~~~~~~~~~l~~vT~----~----dv~~~~~~~l~~~~~~~~~l~i~v~g~ 606 (640)
+..+...++.+ +. ....++.+.+++++. + +|++++++|+.++ ..++.+.+.+.
T Consensus 423 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~---~~~~~~~~~p~ 484 (995)
T 2fge_A 423 MLQSISKWIYDMDP--FEPLKYTEPLKALKTRIAEEGSKAVFSPLIEKLILNN---SHRVTIEMQPD 484 (995)
T ss_dssp HHHHHHHHTTTSCS--SGGGCCHHHHHHHHHHHHHHCHHHHHHHHHHHHTTTC---CCEEEEEEEEE
T ss_pred HHHHHHHHhcCCCh--HHHhhhHHHHHHHHHHhcCCccHHHHHHHHHHHhcCC---CceEEEEEEcC
Confidence 33443333332 22 222233455665555 8 8999999999642 23445555444
No 20
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Probab=99.89 E-value=2.2e-22 Score=233.05 Aligned_cols=580 Identities=11% Similarity=0.055 Sum_probs=324.3
Q ss_pred CcceEEEEEEEcchhh------hhcH-HHHHHHHHHHHHHHHhCCCchHHHHHHHHhhhcccccCCCCChH--HHHHHHH
Q 006560 5 SIAYIFVMSIHLTDSG------LEKI-FDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQD--DYAAELA 75 (640)
Q Consensus 5 ~~~~~f~i~i~Lt~~G------~~~~-~~ii~~~~~~i~~l~~~~~~~~~~~e~~~~~~~~f~~~~~~~~~--~~~~~la 75 (640)
...+.|.|.+.-++.+ ..+. +++.+.|.+.|+.+++.|+++++++..+...+..++..+...+. .++..+.
T Consensus 453 ~~~~~f~i~~~g~~~~~~~~~~~~~~~~~~~~~I~~~L~~l~~~gi~~~ele~a~~~le~~~re~~~~~~~gl~~~~~~~ 532 (1193)
T 3s5m_A 453 LVQYIFSIGLKGIKRNNEKIKNFDKVHYEVEDVIMNALKKVVKEGFNKSAVEASINNIEFILKEANLKTSKSIDFVFEMT 532 (1193)
T ss_dssp SSSCEEEEEEEEECTTCTTCSCGGGHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHH
T ss_pred cCCcEEEEEEecCChhhccccchhhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHH
Confidence 3345688887555432 3457 69999999999999999999999999999888888764322344 2334444
Q ss_pred HhC-CCCCccceeeccccCccC------CHHHHHHHH-hccC-cCceEEEEEeCCCC--CCC-cCcccccccccceeecC
Q 006560 76 GNL-LIYPAEHVIYGEYMYEVW------DEEMIKHLL-GFFM-PENMRIDVVSKSFA--KSQ-DFHYEPWFGSRYTEEDI 143 (640)
Q Consensus 76 ~~l-~~~~~~~vl~~~~~~~~~------d~~~i~~~l-~~l~-p~n~~i~~~~~~~~--~~~-~~~~~~~~~~~Y~~~~i 143 (640)
... +.-.|...|.....+..+ ++..+++++ ++|- .....++.+.|+.. +.. ....++. +=....+
T Consensus 533 ~~w~~~~dp~~~l~~~~~l~~l~~~~~~~~~~~~~li~~yll~n~~~~~~~~~P~~~~~~~~~~~e~~~L---~~~~~~l 609 (1193)
T 3s5m_A 533 SKLNYNRDPLLIFEFEKYLNIVKNKIKNEPMYLEKFVEKHFINNAHRSVILLEGDENYAQEQENLEKQEL---KKRIENF 609 (1193)
T ss_dssp HHHHTTCCTTTTTSHHHHHHHHHHHHHHSTTHHHHHHHHHTTTCCCEEEEEEEEESSHHHHHHHHHHHHH---HHHHHHC
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhccCCceEEEEEEcCCCHHHHHHHHHHHHH---HHHHhhC
Confidence 332 333455544433333222 234678888 4663 33334444455431 000 0000000 0001122
Q ss_pred ChH----------HHHHhcCCCCC------CCCCC---CCCCCCccCCCc---ccccc-------------c------c-
Q 006560 144 SPS----------LMELWRNPPEI------DVSLQ---LPSQNEFIPTDF---SIRAN-------------D------I- 181 (640)
Q Consensus 144 ~~~----------~~~~~~~~~~~------~~~~~---lP~~N~~ip~~~---~l~~~-------------~------~- 181 (640)
+++ .++.|+..... -|.++ +|...+.+|... .+... + .
T Consensus 610 s~~~~~~i~~~~~~L~~~q~~~~~~e~l~~lP~l~~~Di~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 689 (1193)
T 3s5m_A 610 NEQEKEQVIKNFEELSKYKNAEESPEHLNKFPIISISDLNKKTLEVPVNVYFTNINENNNIMETYNKLKTNEHMLKDNMD 689 (1193)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCCCCHHHHTTSCCCCGGGSCSSCCCCCCEEEEECTTTCSCHHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCChhhHHhCCcCcHHHcCCCcccCcccccccccccccccccccccccccccccccccc
Confidence 222 12334331111 11111 233222233220 00000 0 0
Q ss_pred --------CCCC--C----CCCCCeE-----eecCCceEEEeeccCcccCcceEEEEEEecCCCCCCHHHHHHHHHHHHH
Q 006560 182 --------SNDL--V----TVTSPTC-----IIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHL 242 (640)
Q Consensus 182 --------~~~~--~----~~~~P~~-----~~~~~g~~v~~~~d~~f~~P~~~i~~~~~~~~~~~~~~~~~~~~l~~~~ 242 (640)
.... . ....+.- ....+|+.+|+.+..+ .+.+++.+.|+.+. -+.....+..|++.+
T Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~T--NGIvY~~l~fdl~~--l~~e~l~yl~Lf~~~ 765 (1193)
T 3s5m_A 690 VFLKKYVLKNDKHNTNNNNNNNNNMDYSFTETKYEGNVPILVYEMPT--TGIVYLQFVFSLDH--LTVDELAYLNLFKTL 765 (1193)
T ss_dssp HHHHHHTTC---------------------CCTTTTCEEEEEEECCC--TTEEEEEEEEECTT--CCHHHHTTHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccCCeEEEEEECCC--CCeEEEEEEEECCC--CCHHHHhhHHHHHHH
Confidence 0000 0 0000000 0112789999987665 57888888888764 346778888999998
Q ss_pred HHH-HHhhhhhc-------ccccccEEEEEEe--------------cceeEEEEeecCCCHHHHHHHHHHHhccCCCCHH
Q 006560 243 LKD-ELNEIIYQ-------ASVAKLETSVSIF--------------SDKLELKVYGFNDKLPVLLSKILAIAKSFLPSDD 300 (640)
Q Consensus 243 l~~-~l~~~~~~-------a~~ag~~~~~~~~--------------~~g~~i~~~g~s~~l~~~l~~~~~~l~~~~~~~~ 300 (640)
+.. +.....|. ...+|++++.+.. ...+.++....+++++.+++++.+.|.++.|++.
T Consensus 766 L~~lGT~~~sy~el~~~i~~~tGGis~s~~~~~~~~~~~~~~~~~~~~~~~vs~kaL~~n~~~~~~Ll~eiL~~~~F~d~ 845 (1193)
T 3s5m_A 766 ILENKTNKRSSEDFVILREKNIGSMSANVALYSKDDHLNVTDKYNAQALFNLEMHVLSHKCNDALNIALEAVKESDFSNK 845 (1193)
T ss_dssp TTTCCBSSSCHHHHHHHHHHHCSEEEEEEEEECCCBTTBCCCTTCCEEEEEEEEEEEGGGHHHHHHHHHHHHHSBCTTCH
T ss_pred HHhCCCCCCCHHHHHHHHHHhCCceEEEeeeecccccccccccccccceEEEEEEEhhhcHHHHHHHHHHHHhCCCCCcH
Confidence 854 33322222 2455777776532 2346788888999999999999999999999876
Q ss_pred -HHHHHHHHHHHHHhcccc-CccchHHHHHHHhccCCC-C-----C--HHHHH--------hhhccCCHHHHHHHHHHHH
Q 006560 301 -RFKVIKEDVVRTLKNTNM-KPLSHSSYLRLQVLCQSF-Y-----D--VDEKL--------SILHGLSLADLMAFIPELR 362 (640)
Q Consensus 301 -~f~~~k~~~~~~l~~~~~-~p~~~a~~~~~~~l~~~~-~-----~--~~~~~--------~~l~~it~ed~~~~~~~~~ 362 (640)
.+..+.++.+..+.+... ++...|...+...+.+.. + + ....+ +..+.+ .+++.+++++++
T Consensus 846 eRlk~ll~~~ks~le~~i~~sGH~~A~~ra~s~~s~~~~~~e~~~Gl~~~~fl~~l~~~~e~~~~~l-~~~L~~i~~~if 924 (1193)
T 3s5m_A 846 KKVIDILKRKINGMKTTFSEKGYAILMKYVKAHLNSKHYAHNIIYGYENYLKLQEQLELAENDFKTL-ENILVRIRNKIF 924 (1193)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHHHTTTTTCHHHHHHHHHHSHHHHHHHHHHHHHHHHCHHHH-HHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhccccccHHHHHHHHHHhcCcchhhhhhhCChHHHHHHHHHHHhhHhhHHHH-HHHHHHHHHHHc
Confidence 477777777777766543 444455544444333211 0 1 11111 112334 789999999999
Q ss_pred hcceeEEEEeccCC-HHHHHHHHHHHHhhcCC----CCC----------Cc--ccc----ccceEEEcCCCCeEEEEeec
Q 006560 363 SQLYIEGLCHGNLS-QEEAIHISNIFKSIFSV----QPL----------PI--EMR----HQECVICLPSGANLVRNVSV 421 (640)
Q Consensus 363 ~~~~~~~~v~Gni~-~~~~~~l~~~~~~~l~~----~~~----------~~--~~~----~~~~~~~l~~~~~~~~~~~~ 421 (640)
++.++.+.++|+.+ .+++.+.++.+++.++. ... +. ... +.......+...... +..
T Consensus 925 ~~~nl~vsvtg~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~--~~~ 1002 (1193)
T 3s5m_A 925 NKKNLMVSVTSDYGALKHLFVNSNESLKNLVSYFEENDKYINDMQNKVNDPTVMGWNEEIKSKKLFDEEKVKKEF--FVL 1002 (1193)
T ss_dssp CSTTEEEEEEECGGGTHHHHTTTHHHHHHHHHHHHHGGGGSCCCCSSSCCCCCCCHHHHHHHTTCCCTTCCEEEE--EEC
T ss_pred CCCCeEEEEEeChhhHHHHHHHHHHHHHhhhhcccccccccccccccccccccccccccccccccccccccccee--Eec
Confidence 99999999999986 46666555555444421 000 00 000 000000011111111 222
Q ss_pred CCCCCCCeEEEEEEecccccCcchHHHHHHHHHHHHHhc-hhhHHHHHhhcccceEEEeeeeeeCceeeEEEEEEcCCCC
Q 006560 422 KNKCETNSVIELYFQIEQEKGMELTRLKALIDLFDEILE-EPFFNQLRTKEQLGYVVECSPRVTYRVFGFCFCIQSSKYN 500 (640)
Q Consensus 422 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ll~~~l~-s~lf~~LR~k~~LgY~v~s~~~~~~~~~~~~~~vqs~~~~ 500 (640)
|. +.+.+...+. .-....++...+.+|+.+|+ ++||++||+|.+ +|++++++. ..|. +.|+...+. +
T Consensus 1003 --p~-~v~yv~~~~~----~~~~~~~d~~al~Vl~~iLg~~~L~~eIREkgG-AYg~~s~~~-~~G~--f~~~syrdp-~ 1070 (1193)
T 3s5m_A 1003 --PT-FVNSVSMSGI----LFKPGEYLDPSFTVIVAALKNSYLWDTVRGLNG-AYGVFADIE-YDGS--VVFLSARDP-N 1070 (1193)
T ss_dssp --CC-SSBEEEEEEE----CSCTTCBCCTHHHHHHHHHHHTHHHHHHTTTTC-CSEEEEEEC-TTSE--EEEEEESBS-C
T ss_pred --CC-cceEEEEEec----CCCCCCCchHHHHHHHHHHCccHHHHHHHhcCC-eeEEEEecc-CCCc--EEEEEEeCC-C
Confidence 22 3344444444 22222233344555555554 699999999765 999999866 3332 333333221 3
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhccccccccchHhHHHHhcCCHHH
Q 006560 501 PIYLQERIDNFISGLDELLEGLDDESFENYRSGLMAKLLEKDPSLTYESNRFWNQITDKRYMFDQSQKEAEDLKSIKKND 580 (640)
Q Consensus 501 ~~~~~~~i~~fl~~~~~~l~~~se~ef~~~k~~l~~~~~~~~~sl~~~~~~~w~~i~~~~~~f~~~~~~~~~l~~vT~~d 580 (640)
+....+.+++.++.+.+..+++|++|++++|.++++++. .+.+....+..++...+.| .+.++.+++.+.|.+||++|
T Consensus 1071 ~~~tl~~~~~~~~~l~~~~~~~teeEL~~ak~~~~~~~d-~p~~p~~~a~~~~~~~~~G-l~~d~~~~~~~~I~aVT~ed 1148 (1193)
T 3s5m_A 1071 LEKTLATFRESAKGLRKMADTMTENDLLRYIINTIGTID-KPRRGIELSKLSFLRLISN-ESEQDRVEFRKRIMNTKKED 1148 (1193)
T ss_dssp SHHHHHHHHTHHHHHHHHHHHCCHHHHHHHHHHHHHHHS-CCCCTHHHHHHHHHHHHTT-CCHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhccc-ccCChHHHHHHHHHHHHcC-cCHHHHHHHHHHHHcCCHHH
Confidence 444444444445444331148999999999999999975 5666666777665554443 56677889999999999999
Q ss_pred HHHHHHHHcccCCCCcceEEEEEecCCCCc
Q 006560 581 VISWYKTYLQQWSPKCRRLAVRVWGCNTNI 610 (640)
Q Consensus 581 v~~~~~~~l~~~~~~~~~l~i~v~g~~~~~ 610 (640)
|++++++|+.+- ......+.|+|+...+
T Consensus 1149 v~~vA~~~~~~l--~~~~~~~vvvG~~~~i 1176 (1193)
T 3s5m_A 1149 FYKFADLLESKV--NEFEKNIVIITTKEKA 1176 (1193)
T ss_dssp HHHHHHHHHHTH--HHHTTEEEEEECHHHH
T ss_pred HHHHHHHHhhhh--cccCceEEEEcCHHHh
Confidence 999999999750 0013678888886554
No 21
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*
Probab=99.88 E-value=6.1e-22 Score=204.47 Aligned_cols=331 Identities=9% Similarity=0.043 Sum_probs=236.1
Q ss_pred CcceEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHhhh-----hhcccccccEEEEEEecceeEEEEeecCCCHHHHHH
Q 006560 212 LPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELNEI-----IYQASVAKLETSVSIFSDKLELKVYGFNDKLPVLLS 286 (640)
Q Consensus 212 ~P~~~i~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-----~~~a~~ag~~~~~~~~~~g~~i~~~g~s~~l~~~l~ 286 (640)
.|.+.+.+.+..|...+ ...+++.++..++..+.... .......|.+++.+.+.+.+.+.+++.+++++.+++
T Consensus 10 ~~~v~~~~~~~~Gs~~e--~~~G~ah~leh~lf~Gt~~~~~~~l~~~l~~~G~~~na~t~~~~t~~~~~~~~~~l~~~l~ 87 (352)
T 3cx5_B 10 TKISTLAVKVHGGSRYA--TKDGVAHLLNRFNFQNTNTRSALKLVRESELLGGTFKSTLDREYITLKATFLKDDLPYYVN 87 (352)
T ss_dssp CSEEEEEEEESCSGGGC--SSTTHHHHHHHHTTSCBSSSCHHHHHHHHHHHTCEEEEEECSSCEEEEEEEEGGGHHHHHH
T ss_pred CceEEEEEEEeeeccCC--CcccHHHHHHHHhccCcCCCCHHHHHHHHHHhCCeEEEEEccceEEEEEEechhhHHHHHH
Confidence 67888888888776543 35689999999986543321 111233477888888899999999999999999999
Q ss_pred HHHHHhccCCCCHHHHH-HHHHHHHHHHhccccCccchHHHHHHHhccCCCCCHHHHHhhhccCCHHHHHHHHHHHHhcc
Q 006560 287 KILAIAKSFLPSDDRFK-VIKEDVVRTLKNTNMKPLSHSSYLRLQVLCQSFYDVDEKLSILHGLSLADLMAFIPELRSQL 365 (640)
Q Consensus 287 ~~~~~l~~~~~~~~~f~-~~k~~~~~~l~~~~~~p~~~a~~~~~~~l~~~~~~~~~~~~~l~~it~ed~~~~~~~~~~~~ 365 (640)
++.+.+.+|.|++++|+ ++|+.+++++++..++|...+.+.+...+++.++......+.|++++.+++++||+++|.+.
T Consensus 88 ll~d~~~~p~f~~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~~l~~it~~~l~~f~~~~y~~~ 167 (352)
T 3cx5_B 88 ALADVLYKTAFKPHELTESVLPAARYDYAVAEQCPVKSAEDQLYAITFRKGLGNPLLYDGVERVSLQDIKDFADKVYTKE 167 (352)
T ss_dssp HHHHHHHHBCCCHHHHHHTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTTTSCSSCCSSSCCCHHHHHHHHHHHCCGG
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCCCccchhhhccCCHHHHHHHHHHhCCcC
Confidence 99999999999999998 99999999999877899988888888888754332222368899999999999999999999
Q ss_pred eeEEEEeccCCHHHHHHHH-HHHHhhcCCCCCCccccccceEEEcCCCCeEEEEeecCCCCCCCeEEEEEEecccccCcc
Q 006560 366 YIEGLCHGNLSQEEAIHIS-NIFKSIFSVQPLPIEMRHQECVICLPSGANLVRNVSVKNKCETNSVIELYFQIEQEKGME 444 (640)
Q Consensus 366 ~~~~~v~Gni~~~~~~~l~-~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 444 (640)
++.++++| ++.+++.+++ +++++.++.++.+.. +. ..... .+.... +.. ..++.+.+.+. .
T Consensus 168 n~~l~v~G-~~~~~~~~~i~~~~f~~~~~~~~~~~--~~-~~~~~-~~~~~~--~~~----~~~~~~~~~~~----~--- 229 (352)
T 3cx5_B 168 NLEVSGEN-VVEADLKRFVDESLLSTLPAGKSLVS--KS-EPKFF-LGEENR--VRF----IGDSVAAIGIP----V--- 229 (352)
T ss_dssp GEEEEEES-SCHHHHHHHHHHSTTTTSCCCCCCCC--CS-CCCCC-CSCEEE--EEC----SSSEEEEEEEE----E---
T ss_pred cEEEEEeC-CCHHHHHHHHHHHhhccCCCCCCCCC--CC-CCCCc-cCCeEE--Eec----CCCceEEEecC----C---
Confidence 99999999 9999999999 787777764432111 00 00111 122222 222 23444433333 2
Q ss_pred hHHHHHHHHHHHHHhchhhHHHHHhhcccceEEEeeeeeeCceeeEEEEEEcCCCChhhHHHHHHHHHHHHHHHhcCCCH
Q 006560 445 LTRLKALIDLFDEILEEPFFNQLRTKEQLGYVVECSPRVTYRVFGFCFCIQSSKYNPIYLQERIDNFISGLDELLEGLDD 524 (640)
Q Consensus 445 ~~~~~~~~~ll~~~l~s~lf~~LR~k~~LgY~v~s~~~~~~~~~~~~~~vqs~~~~~~~~~~~i~~fl~~~~~~l~~~se 524 (640)
+.++.+.+.+|+.+|++ +||+++|++ |+++.....+.+.+.+++++. +++++.+.+.++++ +++|+
T Consensus 230 ~~~~~~~l~vl~~iLg~----~lre~~gl~--~~~~~~~~~~~g~~~i~~~~~--~~~~~~~~i~~~l~------~~~t~ 295 (352)
T 3cx5_B 230 NKASLAQYEVLANYLTS----ALSELSGLI--SSAKLDKFTDGGLFTLFVRDQ--DSAVVSSNIKKIVA------DLKKG 295 (352)
T ss_dssp CTTTHHHHHHHHHHHHS----TTSTTGGGC--SEEEEEEETTEEEEEEEEEES--CHHHHHHHHHHHHH------HHHSC
T ss_pred CChhHHHHHHHHHHhCc----chhcccCce--EEEeecCcCcceeEEEEEEeC--CHHHHHHHHHHHHH------hcCCH
Confidence 22456677888888877 889998887 556555455545555666653 58888887776553 35899
Q ss_pred HHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhccccccccchHhHHHHhcCCHHHHHHHHHHHcccCCCCcceEEEEEe
Q 006560 525 ESFENYRSGLMAKLLEKDPSLTYESNRFWNQITDKRYMFDQSQKEAEDLKSIKKNDVISWYKTYLQQWSPKCRRLAVRVW 604 (640)
Q Consensus 525 ~ef~~~k~~l~~~~~~~~~sl~~~~~~~w~~i~~~~~~f~~~~~~~~~l~~vT~~dv~~~~~~~l~~~~~~~~~l~i~v~ 604 (640)
+||+++|+.+++++....++.+ ... +. .|++||.+ + + . ++++.++
T Consensus 296 ~el~~ak~~~~~~~~~~~~~~~------------~~~--~~------~i~~vt~~-------~-~-~------~~~~~~~ 340 (352)
T 3cx5_B 296 KDLSPAINYTKLKNAVQNESVS------------SPI--EL------NFDAVKDF-------K-L-G------KFNYVAV 340 (352)
T ss_dssp EECGGGHHHHHHHHHHHCCSTT------------CCC--CS------CGGGCCEE-------C-C-C------SCEEEEE
T ss_pred HHHHHHHHHHHHHHHhhhhccC------------Ccc--ce------eeeeeeHh-------h-c-C------CceEEEE
Confidence 9999999999999887665521 112 22 48888822 2 3 2 6899999
Q ss_pred cCCCCcc
Q 006560 605 GCNTNIK 611 (640)
Q Consensus 605 g~~~~~~ 611 (640)
|+....+
T Consensus 341 G~~~~~~ 347 (352)
T 3cx5_B 341 GDVSNLP 347 (352)
T ss_dssp ESGGGSC
T ss_pred ccccccC
Confidence 9865443
No 22
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A
Probab=99.64 E-value=2.2e-15 Score=141.37 Aligned_cols=169 Identities=11% Similarity=0.075 Sum_probs=118.8
Q ss_pred CCeEEEEEEecccccCcchHHHHHHHHHHHHHhchhhHHHHHhhcccceEEEeeeeeeCceeeEEEEEEcCCCChh-hHH
Q 006560 427 TNSVIELYFQIEQEKGMELTRLKALIDLFDEILEEPFFNQLRTKEQLGYVVECSPRVTYRVFGFCFCIQSSKYNPI-YLQ 505 (640)
Q Consensus 427 ~~~~v~~~~~~~~~~~~~~~~~~~~~~ll~~~l~s~lf~~LR~k~~LgY~v~s~~~~~~~~~~~~~~vqs~~~~~~-~~~ 505 (640)
.++.+.+.|.+|....++.....++..+|++..+|+||++||++ ||+|+|+++.....+...+.+++.. +|+ .++
T Consensus 23 ~~~~v~~~~~~~~~~~~d~~al~vl~~iLggg~sSrL~~~lre~-gl~y~~~~~~~~~~~~g~~~i~~~~---~~~~~~~ 98 (197)
T 3ih6_A 23 GTPLVAAMYHLPAAGSPDFVGLDLAATILADTPSSRLYHALVPT-KLASGVFGFTMDQLDPGLAMFGAQL---QPGMDQD 98 (197)
T ss_dssp CSCEEEEEEECCCTTSTTHHHHHHHHHHHHSSTTSHHHHHHTTT-TSCSEEEEEEETTSSSCEEEEEEEC---CTTSCHH
T ss_pred CCceEEEEEecCCCCCCcHHHHHHHHHHHcCCCCchHHHHHHhc-CceEEEEeccccccCCeEEEEEEEE---CCCCCHH
Confidence 56777778884321112223334455555555568999999985 9999999987654444444455554 334 355
Q ss_pred HHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhccccccccchHhHHHHhcCCHHHHHHH
Q 006560 506 ERIDNFISGLDELL-EGLDDESFENYRSGLMAKLLEKDPSLTYESNRFWNQITDKRYMFDQSQKEAEDLKSIKKNDVISW 584 (640)
Q Consensus 506 ~~i~~fl~~~~~~l-~~~se~ef~~~k~~l~~~~~~~~~sl~~~~~~~w~~i~~~~~~f~~~~~~~~~l~~vT~~dv~~~ 584 (640)
+.++.+.+++.+.. ++++++||+++|+.++.++....++....+..++...+.|+ .+...++.+.|++||.+||+++
T Consensus 99 ~~~~~i~~~l~~l~~~~it~~el~~ak~~~~~~~~~~~~~~~~~a~~l~~~~~~g~--~~~~~~~~~~i~~vT~~dv~~~ 176 (197)
T 3ih6_A 99 KALQTLTATLESLSSKPFSQEELERARSKWLTAWQQTYADPEKVGVALSEAIASGD--WRLFFLQRDRVREAKLDDVQRA 176 (197)
T ss_dssp HHHHHHHHHHHCTTTSCCCHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHTTC--TTHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhCCHHHHHHH
Confidence 55555555554443 68999999999999999999888898888888887776653 3445678999999999999999
Q ss_pred HHHHcccCCCCcceEEEEEecC
Q 006560 585 YKTYLQQWSPKCRRLAVRVWGC 606 (640)
Q Consensus 585 ~~~~l~~~~~~~~~l~i~v~g~ 606 (640)
+++||.++ ..++.++++
T Consensus 177 a~~~l~~~-----~~~~~~~~P 193 (197)
T 3ih6_A 177 AVAYLVRS-----NRTEGRYIP 193 (197)
T ss_dssp HHHHSSGG-----GCEEEEECC
T ss_pred HHHhCCcc-----CeEEEEEeC
Confidence 99999863 334455554
No 23
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens}
Probab=98.55 E-value=8.9e-06 Score=85.49 Aligned_cols=298 Identities=8% Similarity=-0.011 Sum_probs=166.6
Q ss_pred HHHHHHHHHHHHHHHHhCCCchHHHHHHHHhhhcccccCCCCChHHHHHHHHH-hCC-CCCccceeec-cccCccCCHHH
Q 006560 24 IFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAG-NLL-IYPAEHVIYG-EYMYEVWDEEM 100 (640)
Q Consensus 24 ~~~ii~~~~~~i~~l~~~~~~~~~~~e~~~~~~~~f~~~~~~~~~~~~~~la~-~l~-~~~~~~vl~~-~~~~~~~d~~~ 100 (640)
++..++.+ .+.+.+..++++.++..+......+.-. ..+|...+..... .+. ..|......| ...+...+.+.
T Consensus 108 l~~~l~ll---~~~~~~p~f~~~~~~~~~~~~~~e~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~~it~~~ 183 (434)
T 3gwb_A 108 REPALKLF---AEVVGKPTFPADSLARIKNQMLAGFEYQ-KQNPGKLASLELMKRLYGTHPYAHASDGDAKSIPPITLAQ 183 (434)
T ss_dssp HHHHHHHH---HHHHHSCCCCHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTTSTTSSCTTCCTTTTTTCCHHH
T ss_pred HHHHHHHH---HHHHhCCCCCHHHHHHHHHHHHHHHHHh-hcCHHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHhCCHHH
Confidence 56666666 4666777788888887777666665543 2345555544333 221 1222222222 23456788999
Q ss_pred HHHHH-hccCcCceEEEEEeCCCCCCCcCcccccccccceeecCChHHHHHhcCCCCCCCCCCCCCCCCccCCCcccccc
Q 006560 101 IKHLL-GFFMPENMRIDVVSKSFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNPPEIDVSLQLPSQNEFIPTDFSIRAN 179 (640)
Q Consensus 101 i~~~l-~~l~p~n~~i~~~~~~~~~~~~~~~~~~~~~~Y~~~~i~~~~~~~~~~~~~~~~~~~lP~~N~~ip~~~~l~~~ 179 (640)
+.++. ++++|.||.+++++.--.+ ...++ -.+.+..|.. . + .|. .|..
T Consensus 184 l~~f~~~~y~~~~~~l~v~G~~~~~----~~~~~----------~~~~~~~l~~-~---~---~~~----~~~~------ 232 (434)
T 3gwb_A 184 LKAFHAKAYAAGNVVIALVGDLSRS----DAEAI----------AAQVSAALPK-G---P---ALA----KIEQ------ 232 (434)
T ss_dssp HHHHHHHHSCGGGEEEEEEESCCHH----HHHHH----------HHHHHHHSCC-C---C---CCC----CCCC------
T ss_pred HHHHHHHhcCcCCeEEEEEcCCCHH----HHHHH----------HHHHHhcCCC-C---C---CCC----CCCC------
Confidence 99999 5789999999988752200 00000 0112223322 0 0 000 0000
Q ss_pred ccCCCCCCCCCCeEeecCCceEEEeeccCcccCcceEEEEEEecCCCCCCHHHHHHHHHHHHHHHHH-Hhhhhhccc--c
Q 006560 180 DISNDLVTVTSPTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDE-LNEIIYQAS--V 256 (640)
Q Consensus 180 ~~~~~~~~~~~P~~~~~~~g~~v~~~~d~~f~~P~~~i~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-l~~~~~~a~--~ 256 (640)
...| ..+..+.-.+. +...+.+.+..+... ++ ......++..+++.+ +....+... -
T Consensus 233 --------~~~~-----~~~~~~~~~~~-----~~~~v~~~~~~~~~~-~~-d~~~l~vl~~iLg~~~~~s~L~~~lRe~ 292 (434)
T 3gwb_A 233 --------PAEP-----KASIGHIEFPS-----SQTSLMLAQLGIDRD-DP-DYAAVSLGNQILGGGGFGTRLMSEVREK 292 (434)
T ss_dssp --------CCCC-----CCEEEEEECCS-----SEEEEEEEEECCBTT-CT-THHHHHHHHHHHHSSSSCSHHHHHHTTT
T ss_pred --------CCCC-----CCceEEEeCCC-----CceeEEecCcCCCCC-Cc-chHHHHHHHHHhCCCcccchhHHHHHhh
Confidence 0000 01112222221 234566666554322 22 234455566665533 222222111 1
Q ss_pred cccEEEEEEe------cceeEEEEeecCCCHHHHHHHHHHHhcc---CCCCHHHHHHHHHHHHHHHhccccCccchHHHH
Q 006560 257 AKLETSVSIF------SDKLELKVYGFNDKLPVLLSKILAIAKS---FLPSDDRFKVIKEDVVRTLKNTNMKPLSHSSYL 327 (640)
Q Consensus 257 ag~~~~~~~~------~~g~~i~~~g~s~~l~~~l~~~~~~l~~---~~~~~~~f~~~k~~~~~~l~~~~~~p~~~a~~~ 327 (640)
.|+.++++++ .+.+.+.+..-.++...+++.+.+.+.. -.+++++|+++|..++..+.....++...+...
T Consensus 293 ~gl~Y~v~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~el~~ak~~~~~~~~~~~~~~~~~~~~~ 372 (434)
T 3gwb_A 293 RGLTYGVYSGFTPMQARGPFMINLQTRAEMSEGTLKLVQDVFAEYLKNGPTQKELDDAKRELAGSFPLSTASNADIVGQL 372 (434)
T ss_dssp TCCCSCEEEEECCBSSCCEEEEEEEEEGGGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC---CCCCHHHHHHHH
T ss_pred cCCcceeeeecccCCCceeEEEEEecchhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhhhhccCHHHHHHHH
Confidence 1333333221 2345556655555667776666665544 469999999999999999888777777777766
Q ss_pred HHHhccCCCCC-HHHHHhhhccCCHHHHHHHHHHHHhcceeEEEEeccCC
Q 006560 328 RLQVLCQSFYD-VDEKLSILHGLSLADLMAFIPELRSQLYIEGLCHGNLS 376 (640)
Q Consensus 328 ~~~~l~~~~~~-~~~~~~~l~~it~ed~~~~~~~~~~~~~~~~~v~Gni~ 376 (640)
....+++..+. .....+.++++|.+|++++.++++.+.+..++++|+-.
T Consensus 373 ~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~a~~~l~~~~~~~~vvg~~~ 422 (434)
T 3gwb_A 373 GAMGFYNLPLSYLEDFMRQSQELTVEQVKAAMNKHLNVDKMVIVSAGPTV 422 (434)
T ss_dssp HHHHHTTCCTTHHHHHHHHHHHCCHHHHHHHHHHHCCGGGCEEEEEECCC
T ss_pred HHHHHcCCCccHHHHHHHHHHhCCHHHHHHHHHHhcChhhEEEEEEcCcc
Confidence 66655554443 56778999999999999999999999999999999843
No 24
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}
Probab=98.51 E-value=1.2e-05 Score=84.30 Aligned_cols=296 Identities=15% Similarity=0.063 Sum_probs=164.8
Q ss_pred cHHHHHHHHHHHHHHHHhCCCchHHHHHHHHhhhcccccCCCCChHHHHHHHHHhCC--CCCccceeec-cccCccCCHH
Q 006560 23 KIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLL--IYPAEHVIYG-EYMYEVWDEE 99 (640)
Q Consensus 23 ~~~~ii~~~~~~i~~l~~~~~~~~~~~e~~~~~~~~f~~~~~~~~~~~~~~la~~l~--~~~~~~vl~~-~~~~~~~d~~ 99 (640)
++++.++.+ .+.+.+..++++.++..+......+.-.. .+|...+......+. .-|...-..| ...+..++.+
T Consensus 94 ~l~~~l~ll---~d~~~~p~f~~~~~~~ek~~v~~e~~~~~-~~p~~~~~~~~~~~~~~~~p~~~~~~G~~~~l~~it~~ 169 (421)
T 3hdi_A 94 HAGQAIDTL---SDMFFHSTFQKEELEKERKVVFEEIKMVD-DTPDDIVHDLLSSATYGKHSLGYPILGTVETLNSFNEG 169 (421)
T ss_dssp GHHHHHHHH---HHHHHSBCCCHHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHTTSGGGSCTTCCHHHHHHCCHH
T ss_pred HHHHHHHHH---HHHHhCCCCCHHHHHHHHHHHHHHHHHhh-CCHHHHHHHHHHHHhcCCCCCCCCCcCCHHHHHhCCHH
Confidence 567777776 55667777888777766665555544322 235554444333221 1222221112 2234567888
Q ss_pred HHHHHH-hccCcCceEEEEEeCCCCCCCcCcccccccccceeecCChHHHHHhcCCCCCCCCCCCCCCCCccCCCccccc
Q 006560 100 MIKHLL-GFFMPENMRIDVVSKSFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNPPEIDVSLQLPSQNEFIPTDFSIRA 178 (640)
Q Consensus 100 ~i~~~l-~~l~p~n~~i~~~~~~~~~~~~~~~~~~~~~~Y~~~~i~~~~~~~~~~~~~~~~~~~lP~~N~~ip~~~~l~~ 178 (640)
.+.++. ++++|+||.|++++.-- + ... +.++++-. .+|...+ +...
T Consensus 170 ~l~~f~~~~y~p~n~~l~v~Gd~~-~----~~~--------------~~v~~~f~--------~~~~~~~--~~~~---- 216 (421)
T 3hdi_A 170 MLRHYMDRFYTGDYVVISVAGNVH-D----ELI--------------DKIKETFS--------QVKPTTY--NYQG---- 216 (421)
T ss_dssp HHHHHHHHHSSTTTEEEEEEESCC-H----HHH--------------HHHHHHTT--------SSCCCCC--CCCC----
T ss_pred HHHHHHHHhcCcccEEEEEEeCCC-H----HHH--------------HHHHHHhc--------CCCCCCC--CCCC----
Confidence 999888 58899999998876521 1 000 11221111 0111100 0000
Q ss_pred cccCCCCCCCCCCeEeecCCceEEEeeccCcccCcceEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhccc--c
Q 006560 179 NDISNDLVTVTSPTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELNEIIYQAS--V 256 (640)
Q Consensus 179 ~~~~~~~~~~~~P~~~~~~~g~~v~~~~d~~f~~P~~~i~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~a~--~ 256 (640)
. .|. . .+..+...++ .+...+.+.+..+... ++ ......++..+++.+.....+... -
T Consensus 217 -~---------~~~---~-~~~~~~~~~~----~~q~~v~~~~~~~~~~-~~-d~~~l~vl~~iLgg~~~srL~~~lRe~ 276 (421)
T 3hdi_A 217 -E---------KPM---F-LPNRIVRKKE----TEQAHLCLGYPGLPIG-DK-DVYALVLLNNVLGGSMSSRLFQDIREK 276 (421)
T ss_dssp -C---------CCC---C-CCCEEEEECC----CSEEEEEEEEECCCTT-CT-THHHHHHHHHHHTSSSSSHHHHHHTTT
T ss_pred -C---------CCC---C-CCceEEecCC----CCceEEEEEEecCCCC-Cc-hHHHHHHHHHHhCCCcccHHHHHHHHh
Confidence 0 010 0 0112233332 3356677777665432 22 234455566665432222211111 1
Q ss_pred cccEEEEE----Ee--cceeEEEEeecCCCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHHHHHHhccccCccchHHHH
Q 006560 257 AKLETSVS----IF--SDKLELKVYGFNDKLPVLLSKILAIAK---SFLPSDDRFKVIKEDVVRTLKNTNMKPLSHSSYL 327 (640)
Q Consensus 257 ag~~~~~~----~~--~~g~~i~~~g~s~~l~~~l~~~~~~l~---~~~~~~~~f~~~k~~~~~~l~~~~~~p~~~a~~~ 327 (640)
.|+.++++ .. .+.+.+.+..-.++...+++.+.+.+. +-.+++++++++|..++..+....+++...+...
T Consensus 277 ~glay~~~s~~~~~~~~g~~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~t~~el~~ak~~l~~~~~~~~e~~~~~~~~~ 356 (421)
T 3hdi_A 277 RGLCYSVFSYHSSFRDSGMLTIYAGTGHDQLDDLVYSIQETTSALAEKGLTEKELENGKEQLKGSLMLSLESTNSRMSRN 356 (421)
T ss_dssp TCCCSCEEEEEEECSSCEEEEEEEEEEGGGHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCEEEEEEeecccCCCceEEEEEEeCHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence 23322222 21 223444444444567777766666554 4479999999999999999887777776666555
Q ss_pred HHHhc-cCCCCCHHHHHhhhccCCHHHHHHHHHHHHhcceeEEEEeccCC
Q 006560 328 RLQVL-CQSFYDVDEKLSILHGLSLADLMAFIPELRSQLYIEGLCHGNLS 376 (640)
Q Consensus 328 ~~~~l-~~~~~~~~~~~~~l~~it~ed~~~~~~~~~~~~~~~~~v~Gni~ 376 (640)
....+ ........+..+.|+++|.+|++++.++++ +.+..++++|+.+
T Consensus 357 ~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~a~~~~-~~~~~~~vvgp~~ 405 (421)
T 3hdi_A 357 GKNELLLKKHRSLDEMIEQINAVQKQDVSRLAKILL-SASPSISLINANG 405 (421)
T ss_dssp HHHHHHTSCCCCHHHHHHHHHHCCHHHHHHHHHHHT-TSCCEEEEEESSC
T ss_pred HHHHHhcCCCCCHHHHHHHHHcCCHHHHHHHHHHHc-ccCcEEEEECchh
Confidence 44443 344456778899999999999999999999 9899999999864
No 25
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B*
Probab=98.47 E-value=5.9e-05 Score=79.44 Aligned_cols=314 Identities=12% Similarity=0.034 Sum_probs=168.9
Q ss_pred EEEEEEcchhhhhcHHHHHHHHHHHHHHHHhCCCchHHHHHHHHhhhcccccCCCCChHHHHHHHHH-hCC-CCCcccee
Q 006560 10 FVMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAG-NLL-IYPAEHVI 87 (640)
Q Consensus 10 f~i~i~Lt~~G~~~~~~ii~~~~~~i~~l~~~~~~~~~~~e~~~~~~~~f~~~~~~~~~~~~~~la~-~l~-~~~~~~vl 87 (640)
..+.+....+ +++..++.+ .+.+.+..++++.++..+.+....+.-.. .++...+..... .+. ..|.....
T Consensus 89 t~~~~~~~~~---~l~~~l~ll---~d~~~~p~f~~~~~~~e~~~v~~e~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (443)
T 1hr6_B 89 TVYYAKSLQE---DIPKAVDIL---SDILTKSVLDNSAIERERDVIIRESEEVD-KMYDEVVFDHLHEITYKDQPLGRTI 161 (443)
T ss_dssp EEEEEEEEGG---GHHHHHHHH---HHHHHSBCCCHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTTTSGGGSCS
T ss_pred EEEEEEecHH---HHHHHHHHH---HHHHhCCCCCHHHHHHHHHHHHHHHHhhh-CChHHHHHHHHHHHhcCCCCCCCCC
Confidence 3445554543 457777666 45566667888777766665555544322 234444443332 222 12222211
Q ss_pred ec-cccCccCCHHHHHHHH-hccCcCceEEEEEeCCCCCCCcCcccccccccceeecCChHHHHHhcCCCCCCCCCCCCC
Q 006560 88 YG-EYMYEVWDEEMIKHLL-GFFMPENMRIDVVSKSFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNPPEIDVSLQLPS 165 (640)
Q Consensus 88 ~~-~~~~~~~d~~~i~~~l-~~l~p~n~~i~~~~~~~~~~~~~~~~~~~~~~Y~~~~i~~~~~~~~~~~~~~~~~~~lP~ 165 (640)
.| ...+..++.+.+.++. ++++|+||.++++++--.+ .. .+.++++-. .+|.
T Consensus 162 ~g~~~~i~~~~~~~l~~f~~~~y~~~n~~l~v~Gd~~~~----~~--------------~~~i~~~f~--------~~~~ 215 (443)
T 1hr6_B 162 LGPIKNIKSITRTDLKDYITKNYKGDRMVLAGAGAVDHE----KL--------------VQYAQKYFG--------HVPK 215 (443)
T ss_dssp SCCHHHHHHCCHHHHHHHHHHHCCGGGEEEEEEESCCHH----HH--------------HHHHHHHHT--------TSCC
T ss_pred cCCHHHHhhCCHHHHHHHHHhcCcCCCEEEEEEcCCCHH----HH--------------HHHHHHHhc--------CCCC
Confidence 22 1234567888888888 5789999999987652100 00 011222111 0111
Q ss_pred CCCccCCCccccccccCCCCCCCCCCeEeecCCceEEEeeccCcccCcceEEEEEEecCCCCCCHHHHHHHHHHHHHHHH
Q 006560 166 QNEFIPTDFSIRANDISNDLVTVTSPTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKD 245 (640)
Q Consensus 166 ~N~~ip~~~~l~~~~~~~~~~~~~~P~~~~~~~g~~v~~~~d~~f~~P~~~i~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 245 (640)
..+-.+... .. ...|. . .+..+.+.. .. .+...+.+.+..+.. ..+ ......++..+++.
T Consensus 216 ~~~~~~~~~----~~-------~~~~~---~-~~~~~~~~~-~~--~~~~~v~~~~~~~~~-~~~-~~~~l~vl~~iLg~ 275 (443)
T 1hr6_B 216 SESPVPLGS----PR-------GPLPV---F-CRGERFIKE-NT--LPTTHIAIALEGVSW-SAP-DYFVALATQAIVGN 275 (443)
T ss_dssp CSSCCCTTS----CC-------SSCCC---C-CCEEEEEEC-TT--CSEEEEEEEEECCCT-TCT-THHHHHHHHHHHCE
T ss_pred CCCCCCccc----cc-------CCCCC---C-CCCeEEecc-CC--ccceEEEEEEecCCC-CCc-cHHHHHHHHHHhCC
Confidence 100000000 00 00010 0 121222221 11 345677777776643 222 23344555555532
Q ss_pred ---------HHhhhhhcc--cccccEEEEE----E--ecceeEEEEeec--CCCHHHHHHHHHHHh---ccCCCCHHHHH
Q 006560 246 ---------ELNEIIYQA--SVAKLETSVS----I--FSDKLELKVYGF--NDKLPVLLSKILAIA---KSFLPSDDRFK 303 (640)
Q Consensus 246 ---------~l~~~~~~a--~~ag~~~~~~----~--~~~g~~i~~~g~--s~~l~~~l~~~~~~l---~~~~~~~~~f~ 303 (640)
+.....+.. +-.|+.++++ . ..+-+.+.+..- .++...+++.+.+.+ .+..+++++++
T Consensus 276 ~~r~~~~g~~~~s~L~~~lre~~glay~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~t~~el~ 355 (443)
T 1hr6_B 276 WDRAIGTGTNSPSPLAVAASQNGSLANSYMSFSTSYADSGLWGMYIVTDSNEHNVRLIVNEILKEWKRIKSGKISDAEVN 355 (443)
T ss_dssp EETTTBCSSSSCCHHHHHHHSTTCSCSEEEEEEEECSSCEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred CcccCCCCCCcccHHHHHHHHHcCCeEEEEeeecCCCCceEEEEEEEecCChhHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 111111110 0113322222 1 122344555444 457777777766555 44569999999
Q ss_pred HHHHHHHHHHhccccCccchHHHHHHHh-ccCCCCCHHHHHhhhccCCHHHHHHHHHHHHhcceeEEEEeccCC
Q 006560 304 VIKEDVVRTLKNTNMKPLSHSSYLRLQV-LCQSFYDVDEKLSILHGLSLADLMAFIPELRSQLYIEGLCHGNLS 376 (640)
Q Consensus 304 ~~k~~~~~~l~~~~~~p~~~a~~~~~~~-l~~~~~~~~~~~~~l~~it~ed~~~~~~~~~~~~~~~~~v~Gni~ 376 (640)
++|..++..+....++|...+....... .++.........+.|+++|.+|++++.++++.+.+..++++|+..
T Consensus 356 ~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~vt~~dv~~~a~~~l~~~~~~~~v~g~~~ 429 (443)
T 1hr6_B 356 RAKAQLKAALLLSLDGSTAIVEDIGRQVVTTGKRLSPEEVFEQVDKITKDDIIMWANYRLQNKPVSMVALGNTS 429 (443)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTCCHHHHHHHHHHHSSSCCEEEEEEECGG
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCcCCHHHHHHHHHhCCHHHHHHHHHHHhccCCcEEEEECCcc
Confidence 9999999999887777766666555554 345455567778999999999999999999998888999999853
No 26
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*
Probab=98.45 E-value=6.4e-05 Score=78.75 Aligned_cols=305 Identities=13% Similarity=0.075 Sum_probs=166.0
Q ss_pred EEEEEcchhhhhcHHHHHHHHHHHHHHHHhCC---CchHHHHHHHHhhhcccccCCCCCh-HHHHHHHHH-hCCC-CCcc
Q 006560 11 VMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVS---PQKWIFKELQDIGNMEFRFAEEQPQ-DDYAAELAG-NLLI-YPAE 84 (640)
Q Consensus 11 ~i~i~Lt~~G~~~~~~ii~~~~~~i~~l~~~~---~~~~~~~e~~~~~~~~f~~~~~~~~-~~~~~~la~-~l~~-~~~~ 84 (640)
.+.+....+ +++..++.+. +.+.+.. ++++.++..+......+.-.. .+| ...+..... .+.. .|..
T Consensus 77 ~~~~~~~~~---~l~~~l~ll~---~~~~~p~~~~f~~~~~~~ek~~v~~e~~~~~-~~p~~~~~~~~~~~~~~~~~~~~ 149 (431)
T 3cx5_A 77 SYIVSSLPG---STDKSLDFLN---QSFIQQKANLLSSSNFEATKKSVLKQVQDFE-DNDHPNRVLEHLHSTAFQNTPLS 149 (431)
T ss_dssp EEEEEECST---THHHHHHHHH---HHHHTCSTTTTCHHHHHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHTTTSGGG
T ss_pred EEEEEechh---hHHHHHHHHH---HHHhCcccccCCHHHHHHHHHHHHHHHHhhh-cCchhHHHHHHHHHHhcCCCCCC
Confidence 444444443 4577777663 4555555 777777766665555444211 123 333333322 2211 1211
Q ss_pred ceeec-cccCccCCHHHHHHHH-hccCcCceEEEEEeCCCCCCCcCcccccccccceeecCChHHHHHhcCCCCCCCCCC
Q 006560 85 HVIYG-EYMYEVWDEEMIKHLL-GFFMPENMRIDVVSKSFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNPPEIDVSLQ 162 (640)
Q Consensus 85 ~vl~~-~~~~~~~d~~~i~~~l-~~l~p~n~~i~~~~~~~~~~~~~~~~~~~~~~Y~~~~i~~~~~~~~~~~~~~~~~~~ 162 (640)
.-..| ...+..++.+++.++. +++.|+||.+++++.--. ++..+.... .-..
T Consensus 150 ~~~~g~~~~l~~~t~~~l~~f~~~~y~~~~~~l~v~G~~~~---------------------~~~~~~~~~-----~~~~ 203 (431)
T 3cx5_A 150 LPTRGTLESLENLVVADLESFANNHFLNSNAVVVGTGNIKH---------------------EDLVNSIES-----KNLS 203 (431)
T ss_dssp SCTTCCHHHHHTCCHHHHHHHHHHHSCGGGEEEEEEESCCH---------------------HHHHHHHTT-----SCCC
T ss_pred CCCCCCHHHHhhCCHHHHHHHHHhcCCCCcEEEEEEcCCCH---------------------HHHHHHHHH-----HhCC
Confidence 11112 1234567888998888 578999999998765210 111111111 0012
Q ss_pred CCCCCCccCCCccccccccCCCCCCCCCCeEeecCCceEEEeeccCcccCcceEEEEEEecCCCCCCHHHHHHHHHHHHH
Q 006560 163 LPSQNEFIPTDFSIRANDISNDLVTVTSPTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHL 242 (640)
Q Consensus 163 lP~~N~~ip~~~~l~~~~~~~~~~~~~~P~~~~~~~g~~v~~~~d~~f~~P~~~i~~~~~~~~~~~~~~~~~~~~l~~~~ 242 (640)
+|.... |.. .. + |. ..+..+.+.. .. .+...+.+.+..+... ++ ......++..+
T Consensus 204 ~~~~~~--~~~-----~~-------~--~~----~~~~~~~~~~-~~--~~~~~v~~~~~~~~~~-~~-~~~~~~vl~~i 258 (431)
T 3cx5_A 204 LQTGTK--PVL-----KK-------K--AA----FLGSEVRLRD-DT--LPKAWISLAVEGEPVN-SP-NYFVAKLAAQI 258 (431)
T ss_dssp SSCSCC--CCC-----CC-------C--CC----CCCEEEEEEC-TT--SSSEEEEEEEECCCTT-CT-THHHHHHHHHH
T ss_pred CCCCCC--CCC-----CC-------C--Cc----ccCceEEEcC-CC--CCceEEEEEeecCCCC-Cc-cHHHHHHHHHH
Confidence 332110 100 00 0 00 0122333322 11 3456777777765432 22 23334555555
Q ss_pred HHH-------------HHhhhhhcccccccEEEEEEe------cceeEEEEeecC-CCHHHHHHHHHHHhccC--CCCHH
Q 006560 243 LKD-------------ELNEIIYQASVAKLETSVSIF------SDKLELKVYGFN-DKLPVLLSKILAIAKSF--LPSDD 300 (640)
Q Consensus 243 l~~-------------~l~~~~~~a~~ag~~~~~~~~------~~g~~i~~~g~s-~~l~~~l~~~~~~l~~~--~~~~~ 300 (640)
+.. .+...... .|+.++++.+ .+.+.+.+..-. ++...+++.+.+.+... .++++
T Consensus 259 L~~~~~~~~~~~~~~s~L~~~lRe---~gl~y~v~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~l~~l~~~~t~~ 335 (431)
T 3cx5_A 259 FGSYNAFEPASRLQGIKLLDNIQE---YQLCDNFNHFSLSYKDSGLWGFSTATRNVTMIDDLIHFTLKQWNRLTISVTDT 335 (431)
T ss_dssp HCEEETTCTTGGGSSCTHHHHHHT---TTCCSEEEEEEEECSSCEEEEEEEEESCTTCHHHHHHHHHHHHHHHHHTCCHH
T ss_pred cCCCccCCCCccccccHHHHHHHh---cCceeeEeEeecccCCCceEEEEEeeCchhhHHHHHHHHHHHHHHHhcCCCHH
Confidence 542 12111111 1333333222 223445555544 67776666655544322 79999
Q ss_pred HHHHHHHHHHHHHhc--cccCccchHHHHHHHhc-cCCCCCHHHHHhhhccCCHHHHHHHHHHHHhcceeEEEEeccCC
Q 006560 301 RFKVIKEDVVRTLKN--TNMKPLSHSSYLRLQVL-CQSFYDVDEKLSILHGLSLADLMAFIPELRSQLYIEGLCHGNLS 376 (640)
Q Consensus 301 ~f~~~k~~~~~~l~~--~~~~p~~~a~~~~~~~l-~~~~~~~~~~~~~l~~it~ed~~~~~~~~~~~~~~~~~v~Gni~ 376 (640)
+|+++|..++..+.. ...+|...+.......+ ++.........+.++++|.+|++++.++++.+.+..++++|+.+
T Consensus 336 el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~vt~~dv~~~a~~~l~~~~~~~~v~g~~~ 414 (431)
T 3cx5_A 336 EVERAKSLLKLQLGQLYESGNPVNDANLLGAEVLIKGSKLSLGEAFKKIDAITVKDVKAWAGKRLWDQDIAIAGTGQIE 414 (431)
T ss_dssp HHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHCCHHHHHHHHHHHTTTCCCEEEEEESCT
T ss_pred HHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCHHHHHHHHHHHcccCCcEEEEEcchh
Confidence 999999999999988 77777777766665543 44444567778899999999999999999998888999999864
No 27
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C
Probab=98.45 E-value=3.1e-05 Score=81.72 Aligned_cols=304 Identities=12% Similarity=0.065 Sum_probs=168.5
Q ss_pred cHHHHHHHHHHHHHHHHhCCCchHHHHHHHHhhhcccccCCCCChHHHHHHHHH-hCCC-CCccceeec-cccCccCCHH
Q 006560 23 KIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAG-NLLI-YPAEHVIYG-EYMYEVWDEE 99 (640)
Q Consensus 23 ~~~~ii~~~~~~i~~l~~~~~~~~~~~e~~~~~~~~f~~~~~~~~~~~~~~la~-~l~~-~~~~~vl~~-~~~~~~~d~~ 99 (640)
+++..++.+ .+.+....++++.++..+......+.-+...+|...+..... .+.. -|......| ...+..++.+
T Consensus 99 ~l~~~l~ll---~d~~~~p~f~~~~~~~e~~~v~~e~~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~e~l~~it~~ 175 (445)
T 3ami_A 99 RLSDVMGLE---ADRMANLVVDDELFKKEIQVIAEERRWRTDDKPRSKAYEALMAASYVAHPYRVPVIGWMNDIQNMTAQ 175 (445)
T ss_dssp GHHHHHHHH---HHHHHCBCCCHHHHHHHHHHHHHHHHHTGGGCHHHHHHHHHHHHHCSSSGGGSCTTCCHHHHHHCCHH
T ss_pred HHHHHHHHH---HHHhcCCCCCHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHhccCCCCCCCCCCCHHHHhhCCHH
Confidence 456777666 455666678888787666666555542222235444333332 2221 122211112 1234567788
Q ss_pred HHHHHH-hccCcCceEEEEEeCCCCCCCcCcccccccccceeecCChHHHHHhcCCCCCCCCCCCCCCCCccCCCccccc
Q 006560 100 MIKHLL-GFFMPENMRIDVVSKSFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNPPEIDVSLQLPSQNEFIPTDFSIRA 178 (640)
Q Consensus 100 ~i~~~l-~~l~p~n~~i~~~~~~~~~~~~~~~~~~~~~~Y~~~~i~~~~~~~~~~~~~~~~~~~lP~~N~~ip~~~~l~~ 178 (640)
.+.++. ++.+|+||.|+++++--.+ ... +.++++-. .+|..+.-.+..
T Consensus 176 ~l~~f~~~~y~p~n~~l~vvGd~d~~----~~~--------------~~v~~~f~--------~~~~~~~~~~~~----- 224 (445)
T 3ami_A 176 DVRDWYKRWYGPNNATVVVVGDVEHE----AVF--------------RLAEQTYG--------KLARVEAPARKQ----- 224 (445)
T ss_dssp HHHHHHHHHCSGGGEEEEEEESCCHH----HHH--------------HHHHHTGG--------GSCCCCCCCCCC-----
T ss_pred HHHHHHHHhCCccceEEEEEcCCCHH----HHH--------------HHHHHHhc--------CCCCCCCCCCCC-----
Confidence 888888 5889999999988752100 000 11111100 011110000000
Q ss_pred cccCCCCCCCCCCeEeecCCceEEEeeccCcccCcceEEEEEEecCCC--CCCHHHHHHHHHHHHHHHHHHhhhhhcc--
Q 006560 179 NDISNDLVTVTSPTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGG--YDNVKNCILTELFIHLLKDELNEIIYQA-- 254 (640)
Q Consensus 179 ~~~~~~~~~~~~P~~~~~~~g~~v~~~~d~~f~~P~~~i~~~~~~~~~--~~~~~~~~~~~l~~~~l~~~l~~~~~~a-- 254 (640)
...|. ......+....+ .+...+.+.+..+.. ..+........++..++..+.....+..
T Consensus 225 ---------~~~~~---~~~~~~~~~~~~----~~~~~v~l~~~~~~~~~~~~~~~~~~~~vl~~iLg~~~~srL~~~lr 288 (445)
T 3ami_A 225 ---------QGEPQ---QAGVRRVTVKAP----AELPYLALAWHVPAIVDLDKSRDAYALEILAAVLDGYDGARMTRQLV 288 (445)
T ss_dssp ---------CCCCC---CCSCEEEEEEEE----CSSCEEEEEEEECCCSSTTCCHHHHHHHHHHHHHHSSTTCHHHHHTT
T ss_pred ---------CCCCC---CCCceEEEEecC----CCccEEEEEEEcCCcccccCChhHHHHHHHHHHHcCCcchHHHHHHh
Confidence 00010 001111222221 223456666666652 2213444556677777764433322221
Q ss_pred cccccEEEEEEe-----c--ce-eEEEEeecCC-CHHHHHHHHHHHhcc---CCCCHHHHHHHHHHHHHHHhccccCccc
Q 006560 255 SVAKLETSVSIF-----S--DK-LELKVYGFND-KLPVLLSKILAIAKS---FLPSDDRFKVIKEDVVRTLKNTNMKPLS 322 (640)
Q Consensus 255 ~~ag~~~~~~~~-----~--~g-~~i~~~g~s~-~l~~~l~~~~~~l~~---~~~~~~~f~~~k~~~~~~l~~~~~~p~~ 322 (640)
+-.|+.++++++ . .| +.+.+.+-.+ +...+++.+.+.+.. -.+++++|+++|+.++..+....+++..
T Consensus 289 e~~gl~y~v~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~i~~~l~~l~~~g~t~~el~~ak~~~~~~~~~~~~~~~~ 368 (445)
T 3ami_A 289 RGNKHAVSAGAGYDSLSRGQQGLFILEGVPSKGVTIAQLETDLRAQVRDIAAKGVTEAELSRVKSQMVAGKVYEQDSLMG 368 (445)
T ss_dssp TTSCCEEEEEEECCCCCSSCCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTTSHHH
T ss_pred hcCCcEEEEEeeccccccCCCCeEEEEEEECCCCCHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhCHHH
Confidence 123555555432 1 12 4455555444 477777666655544 4699999999999999999887777776
Q ss_pred hHHHHHHHhccCCCC-CHHHHHhhhccCCHHHHHHHHHHHHhcceeEEEEeccCC
Q 006560 323 HSSYLRLQVLCQSFY-DVDEKLSILHGLSLADLMAFIPELRSQLYIEGLCHGNLS 376 (640)
Q Consensus 323 ~a~~~~~~~l~~~~~-~~~~~~~~l~~it~ed~~~~~~~~~~~~~~~~~v~Gni~ 376 (640)
.+.......++...+ ......+.++++|.+|+.++.++++.+.+..++++|.-.
T Consensus 369 ~~~~l~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~a~~~l~~~~~~~~~~~p~~ 423 (445)
T 3ami_A 369 QATQIGGLEVLGLSWRDDDRFYQQLRSVTAAEVKAAAARLLTDDTLTVANLVPLP 423 (445)
T ss_dssp HHHHHHHHHTTTCCTTHHHHHHHHHHTCCHHHHHHHHHTTSCSTTEEEEEEEEEC
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHcCCHHHHHHHHHHHcCcCCeEEEEEccCc
Confidence 777666666665333 355678899999999999999999999888899998743
No 28
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas}
Probab=98.42 E-value=2.1e-05 Score=82.33 Aligned_cols=297 Identities=8% Similarity=0.026 Sum_probs=164.5
Q ss_pred HHHHHHHHHHHHHHHhCCCchHHHHHHHHhhhcccccCCCCChHHHHHHHHHhCC--CCCccceeeccccCccCCHHHHH
Q 006560 25 FDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLL--IYPAEHVIYGEYMYEVWDEEMIK 102 (640)
Q Consensus 25 ~~ii~~~~~~i~~l~~~~~~~~~~~e~~~~~~~~f~~~~~~~~~~~~~~la~~l~--~~~~~~vl~~~~~~~~~d~~~i~ 102 (640)
+..++.+ .+.+.+..++++.++..+......+.-.. .+|...+......+. ..|..... ....+..++.+++.
T Consensus 104 ~~~l~ll---~~~~~~p~f~~~~~~~e~~~v~~e~~~~~-~~p~~~~~~~~~~~~~~~~p~~~~~-~~~~l~~it~~~l~ 178 (424)
T 3amj_B 104 NSALTIL---RDILAHPTFPAPVLERERARAIAGLREAQ-TQPGSILGRRFTELAYGKHPYGHVS-SVATLQKISRDQLV 178 (424)
T ss_dssp HHHHHHH---HHHHHCBCCCHHHHHHHHHHHHHHHHHHT-TSHHHHHHHHHHHHHHTTSGGGCCC-CHHHHHHCCHHHHH
T ss_pred hHHHHHH---HHHHhCCCCCHHHHHHHHHHHHHHHHHhh-cCHHHHHHHHHHHhcCCCCCCCCCC-CHHHHHhCCHHHHH
Confidence 5555555 45566777888878766666655554322 245554444333221 11221111 11223557888888
Q ss_pred HHH-hccCcCceEEEEEeCCCCCCCcCcccccccccceeecCChHHHHHhcCCCCCCCCCCCCCCCCccCCCcccccccc
Q 006560 103 HLL-GFFMPENMRIDVVSKSFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNPPEIDVSLQLPSQNEFIPTDFSIRANDI 181 (640)
Q Consensus 103 ~~l-~~l~p~n~~i~~~~~~~~~~~~~~~~~~~~~~Y~~~~i~~~~~~~~~~~~~~~~~~~lP~~N~~ip~~~~l~~~~~ 181 (640)
++. ++++|+||.+++++.--.+ ... +.++++-. .+|...+..|.. .
T Consensus 179 ~f~~~~y~~~~~~l~v~Gd~~~~----~~~--------------~~~~~~f~--------~~~~~~~~~~~~------~- 225 (424)
T 3amj_B 179 SFHRTHYVARTAVVTLVGDITRA----EAE--------------TIAQQLTA--------DLPAGATLPPLP------D- 225 (424)
T ss_dssp HHHHHHSCTTSCEEEEEESCCHH----HHH--------------HHHHHTTT--------TSCCCCCCCCCC------C-
T ss_pred HHHHHhcCCCceEEEEEeCCCHH----HHH--------------HHHHHHHh--------cCCCCCCCCCCC------C-
Confidence 888 5789999999988652100 000 11111110 022110000000 0
Q ss_pred CCCCCCCCCCeEeecCCceEEEeeccCcccCcceEEEEEEecCCCCCCHHHHHHHHHHHHHHHHH-Hhhhhhccc--ccc
Q 006560 182 SNDLVTVTSPTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDE-LNEIIYQAS--VAK 258 (640)
Q Consensus 182 ~~~~~~~~~P~~~~~~~g~~v~~~~d~~f~~P~~~i~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-l~~~~~~a~--~ag 258 (640)
...| .+..+....+ .+...+.+.+..+.. ..+ ......++..+++.+ +....+... -.|
T Consensus 226 ------~~~~------~~~~~~~~~~----~~~~~v~~~~~~~~~-~~~-~~~~~~vl~~iLg~~~~~srL~~~lR~~~g 287 (424)
T 3amj_B 226 ------PAMP------RATVERIANP----ATQAHIAIGMPTLKR-GDP-DFFPLVVGNYALGGGGFESRLMKEIRDKRG 287 (424)
T ss_dssp ------CCCC------CCEEEEEECS----SSEEEEEEEEEEEBT-TCT-THHHHHHHHHHHTTSGGGSHHHHHHTTTTC
T ss_pred ------CCCC------CCceEEeeCC----CCccEEEeeccCCCC-CCc-chHHHHHHHHHhCCCCccchhHHHHHHhCC
Confidence 0001 1222222221 234566666655432 222 234446666665543 333222221 135
Q ss_pred cEEEEEEe------cceeEEEEeecCCCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHHHHHHhccccCccchHHHHHH
Q 006560 259 LETSVSIF------SDKLELKVYGFNDKLPVLLSKILAIAK---SFLPSDDRFKVIKEDVVRTLKNTNMKPLSHSSYLRL 329 (640)
Q Consensus 259 ~~~~~~~~------~~g~~i~~~g~s~~l~~~l~~~~~~l~---~~~~~~~~f~~~k~~~~~~l~~~~~~p~~~a~~~~~ 329 (640)
+.++++++ .+.+.+.+..-.++...+++.+.+.+. +-.+++++|+++|..++..+.....+|...+.....
T Consensus 288 l~y~v~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~ 367 (424)
T 3amj_B 288 LSYGAYSYFSPQKSMGLFQIGFETRAEKADEAVQVANDTLDAFLREGPTDAELQAAKDNLINGFALRLDSNAKILGQVAV 367 (424)
T ss_dssp CEEEEEEEECCBSSCEEEEEEEEEESTTHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTSGGGGSSHHHHHHHHHH
T ss_pred eEEEeeeeeccCCCceeEEEEEEeCcccHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhhHhcCCHHHHHHHHHH
Confidence 55554432 133556665555677777777666555 446999999999999999888776777766666655
Q ss_pred HhccCCCCC-HHHHHhhhccCCHHHHHHHHHHHHhcceeEEEEeccCCH
Q 006560 330 QVLCQSFYD-VDEKLSILHGLSLADLMAFIPELRSQLYIEGLCHGNLSQ 377 (640)
Q Consensus 330 ~~l~~~~~~-~~~~~~~l~~it~ed~~~~~~~~~~~~~~~~~v~Gni~~ 377 (640)
..+++..+. .....+.++++|.+|++++.++++.+.+..++++|+-.+
T Consensus 368 ~~~~~~~~~~~~~~~~~i~~vt~~dv~~~a~~~l~~~~~~~~~~~~~~~ 416 (424)
T 3amj_B 368 IGYYGLPLDYLDHYTERVQAVTVEQVREAFARHVKRENLITVVVGGKAS 416 (424)
T ss_dssp HHHTTCCTTTTTSHHHHHHTCCHHHHHHHHHHHCCGGGCEEEEEECC--
T ss_pred HHHcCCChhHHHHHHHHHHcCCHHHHHHHHHHhcCccceEEEEECChhh
Confidence 555544333 445678899999999999999999999999999998643
No 29
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ...
Probab=98.42 E-value=7.9e-05 Score=78.32 Aligned_cols=302 Identities=11% Similarity=0.051 Sum_probs=167.9
Q ss_pred EEEEEcchhhhhcHHHHHHHHHHHHHHHHhCCCchHHHHHHHHhhhcccccCCCCChHHHHHHHHHh-CCCCCccceeec
Q 006560 11 VMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGN-LLIYPAEHVIYG 89 (640)
Q Consensus 11 ~i~i~Lt~~G~~~~~~ii~~~~~~i~~l~~~~~~~~~~~e~~~~~~~~f~~~~~~~~~~~~~~la~~-l~~~~~~~vl~~ 89 (640)
.+.+....+ +++..++.+ .+.+.+..++++.++..+......+.-.. ..|...+...... +...|...-..|
T Consensus 106 ~~~~~~~~~---~l~~~l~ll---~~~~~~p~f~~~~~~~~k~~v~~e~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~g 178 (439)
T 1pp9_B 106 AYTVECLRD---DVDILMEFL---LNVTTAPEFRRWEVAALQPQLRIDKAVAL-QNPQAHVIENLHAAAYRNALANSLYC 178 (439)
T ss_dssp EEEEEEEGG---GHHHHHHHH---HHHHHCBCCCHHHHHHHHHHHHHHHHHHT-TSHHHHHHHHHHHHHBSSGGGSCSSC
T ss_pred EEEEEeehh---hHHHHHHHH---HHHHhCCCCCHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHhcCCCCCCccC
Confidence 344444443 457777666 45566777888888777666655554322 2354444333322 221111111112
Q ss_pred -cccCccCCHHHHHHHH-hccCcCceEEEEEeCCCCCCCcCcccccccccceeecCChHHHHHhcCCCCCCCCCCCCCCC
Q 006560 90 -EYMYEVWDEEMIKHLL-GFFMPENMRIDVVSKSFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNPPEIDVSLQLPSQN 167 (640)
Q Consensus 90 -~~~~~~~d~~~i~~~l-~~l~p~n~~i~~~~~~~~~~~~~~~~~~~~~~Y~~~~i~~~~~~~~~~~~~~~~~~~lP~~N 167 (640)
...+..++.+.+.++. ++++|+||.+++++. -.+ ... +.++++- .+|...
T Consensus 179 ~~~~l~~it~~~l~~f~~~~y~~~~~~l~v~G~-~~~----~~~--------------~~~~~~~---------~~~~~~ 230 (439)
T 1pp9_B 179 PDYRIGKVTPVELHDYVQNHFTSARMALIGLGV-SHP----VLK--------------QVAEQFL---------NIRGGL 230 (439)
T ss_dssp CGGGTTTCCHHHHHHHHHHHCSGGGEEEEEESS-CHH----HHH--------------HHHHHHC---------CCCCCC
T ss_pred CHHHHhhcCHHHHHHHHHHhCCCCceEEEEeCC-CHH----HHH--------------HHHHHHh---------CCCCCC
Confidence 2345678899999998 578999999998876 210 000 1111111 011110
Q ss_pred CccCCCccccccccCCCCCCCCCCeEeecCCceEEEeeccCcccCcceEEEEEEecCCCCCCHHHHHHHHHHHHHHHHH-
Q 006560 168 EFIPTDFSIRANDISNDLVTVTSPTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDE- 246 (640)
Q Consensus 168 ~~ip~~~~l~~~~~~~~~~~~~~P~~~~~~~g~~v~~~~d~~f~~P~~~i~~~~~~~~~~~~~~~~~~~~l~~~~l~~~- 246 (640)
+ .+.. .. | ...+ .+.+..+ .+...+.+.+..+.. .+ .......++..+++.+
T Consensus 231 ~-~~~~-----~~----------~----~~~~-~~~~~~~----~~~~~v~~~~~~~~~-~~-~~~~~~~ll~~iLg~~~ 283 (439)
T 1pp9_B 231 G-LSGA-----KA----------K----YHGG-EIREQNG----DSLVHAALVAESAAI-GS-AEANAFSVLQHVLGAGP 283 (439)
T ss_dssp --CCCC-----CC----------C----BCCE-EEEEECC----CSEEEEEEEEECCCT-TS-HHHHHHHHHHHHHCCSC
T ss_pred C-CCCC-----CC----------C----CcCC-eEEecCC----ccceEEEEEecCCCC-Cc-hHHHHHHHHHHHhCCCc
Confidence 0 0000 00 0 0011 1112211 345667777776543 23 3445556666666321
Q ss_pred -------Hhhhhhcc--cccccEEEEEEe----c-ce-eEEEEeecCCCHHHHHHHHHHHhc---cCCCCHHHHHHHHHH
Q 006560 247 -------LNEIIYQA--SVAKLETSVSIF----S-DK-LELKVYGFNDKLPVLLSKILAIAK---SFLPSDDRFKVIKED 308 (640)
Q Consensus 247 -------l~~~~~~a--~~ag~~~~~~~~----~-~g-~~i~~~g~s~~l~~~l~~~~~~l~---~~~~~~~~f~~~k~~ 308 (640)
+....+.. +-.|+.++++.+ . .| +.+.+..-.+++..+++.+.+.+. +-.+++++|+++|..
T Consensus 284 ~~~~~~g~~s~L~~~lRe~~gl~Y~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~t~~el~~ak~~ 363 (439)
T 1pp9_B 284 HVKRGSNATSSLYQAVAKGVHQPFDVSAFNASYSDSGLFGFYTISQAASAGDVIKAAYNQVKTIAQGNLSNPDVQAAKNK 363 (439)
T ss_dssp SBTTCCCTTCHHHHHHHHHCCSCEEEEEEEEEETTEEEEEEEEEEEGGGHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred ccCCCCCccCHHHHHHHHhcCCceEEEEeeccccccceEEEEEEeCHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 01111111 012333333221 1 23 445555444567777776665554 356999999999999
Q ss_pred HHHHHhccccCccchHHHHHHHhcc-CCCCCHHHHHhhhccCCHHHHHHHHHHHHhcceeEEEEeccC
Q 006560 309 VVRTLKNTNMKPLSHSSYLRLQVLC-QSFYDVDEKLSILHGLSLADLMAFIPELRSQLYIEGLCHGNL 375 (640)
Q Consensus 309 ~~~~l~~~~~~p~~~a~~~~~~~l~-~~~~~~~~~~~~l~~it~ed~~~~~~~~~~~~~~~~~v~Gni 375 (640)
++..+....++|...+.......+. ..........+.++++|.+|++++.++++. .+..++++|+.
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~a~~~~~-~~~~~~v~g~~ 430 (439)
T 1pp9_B 364 LKAGYLMSVESSEGFLDEVGSQALAAGSYTPPSTVLQQIDAVADADVINAAKKFVS-GRKSMAASGNL 430 (439)
T ss_dssp HHHHHHHHTSSHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTCCHHHHHHHHHHHHH-SCEEEEEEECG
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCHHHHHHHHHHHhc-CCceEEEECCc
Confidence 9999887667777666666555554 333456778899999999999999999998 78889999984
No 30
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}
Probab=98.39 E-value=1.8e-05 Score=82.34 Aligned_cols=296 Identities=12% Similarity=0.016 Sum_probs=169.5
Q ss_pred cHHHHHHHHHHHHHHHHhCCCchHHHHHHHHhhhcccccCCCCChHHHHHHHHHhCC--CCCccceeecc-ccCccCCHH
Q 006560 23 KIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLL--IYPAEHVIYGE-YMYEVWDEE 99 (640)
Q Consensus 23 ~~~~ii~~~~~~i~~l~~~~~~~~~~~e~~~~~~~~f~~~~~~~~~~~~~~la~~l~--~~~~~~vl~~~-~~~~~~d~~ 99 (640)
+++..++.+ .+.+ +..++++.++.-+......+.-.. .+|...+........ ..|...-..|. ..+..++.+
T Consensus 94 ~l~~~l~ll---~d~~-~p~f~~~~~~~ek~~v~~e~~~~~-~~p~~~~~~~~~~~~~~~~p~~~~~~G~~~~i~~~t~~ 168 (406)
T 3eoq_A 94 FAYDLLGLF---AKLL-RPALREEDFQTEKLVILEEIARYQ-DRPGFMAYEWARARFFQGHPLGNSVLGTRESITALTRE 168 (406)
T ss_dssp GHHHHHHHH---HHHT-SCCCCHHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHTTCGGGCCSSCCHHHHHHCCHH
T ss_pred HHHHHHHHH---HHHh-cCCCCHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCCCCCCCcCCHHHHhhCCHH
Confidence 456666666 5666 666777777765655544444222 235554444433221 22333322232 335667888
Q ss_pred HHHHHH-hccCcCceEEEEEeCCCCCCCcCcccccccccceeecCChHHHHHhcCCCCCCCCCCCCCCCCccCCCccccc
Q 006560 100 MIKHLL-GFFMPENMRIDVVSKSFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNPPEIDVSLQLPSQNEFIPTDFSIRA 178 (640)
Q Consensus 100 ~i~~~l-~~l~p~n~~i~~~~~~~~~~~~~~~~~~~~~~Y~~~~i~~~~~~~~~~~~~~~~~~~lP~~N~~ip~~~~l~~ 178 (640)
++.++- ++.+|+||.|+++++--.+ ... +.++++-. .+|.. +..+. .
T Consensus 169 ~l~~f~~~~y~p~n~~l~v~Gd~~~~----~~~--------------~~i~~~f~--------~~~~~-~~~~~-~---- 216 (406)
T 3eoq_A 169 GMAAYHRRRYLPKNMVLAATGRVDFD----RLL--------------AEAERLTE--------AWPEG-EAERA-Y---- 216 (406)
T ss_dssp HHHHHHHHHCCGGGEEEEEEESCCHH----HHH--------------HHHHHHHT--------TCCCC-CCCCC-C----
T ss_pred HHHHHHHHhCCccCEEEEEEcCCCHH----HHH--------------HHHHHHhc--------CCCCC-CCCCC-C----
Confidence 998888 6889999999988752100 000 11111110 01110 00000 0
Q ss_pred cccCCCCCCCCCCeEeecCCceEEEeeccCcccCcceEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhcc--cc
Q 006560 179 NDISNDLVTVTSPTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDELNEIIYQA--SV 256 (640)
Q Consensus 179 ~~~~~~~~~~~~P~~~~~~~g~~v~~~~d~~f~~P~~~i~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~a--~~ 256 (640)
.. ....| + .+....+. .+...+.+.+..+... ++. .....++..++..+.....+.. +
T Consensus 217 ~~------~~~~~-------~-~~~~~~~~---~~q~~~~~~~~~~~~~-~~d-~~~l~vl~~iLgg~~~srL~~~lre- 276 (406)
T 3eoq_A 217 PP------LTPAF-------G-VEERPYEK---ARALYLVALFPGVAYQ-EEA-RFPGQVLAHLLGEEGSGRLHFALVD- 276 (406)
T ss_dssp CC------CCCCC-------E-EEEEECTT---CSSEEEEEEEECCCTT-CTT-HHHHHHHHHHHHCTTTSHHHHHTTT-
T ss_pred CC------CCCCC-------c-eEEEecCC---ccceEEEEEecCCCCC-Cch-HHHHHHHHHHhCCCcchHHHHHHHH-
Confidence 00 00011 1 12222212 1345677777665433 332 3445666677654322222111 2
Q ss_pred cccEEEEEEec------ceeEEEEeecCCCHHHHHHHHHHHhcc---CCCCHHHHHHHHHHHHHHHhccccCccchHHHH
Q 006560 257 AKLETSVSIFS------DKLELKVYGFNDKLPVLLSKILAIAKS---FLPSDDRFKVIKEDVVRTLKNTNMKPLSHSSYL 327 (640)
Q Consensus 257 ag~~~~~~~~~------~g~~i~~~g~s~~l~~~l~~~~~~l~~---~~~~~~~f~~~k~~~~~~l~~~~~~p~~~a~~~ 327 (640)
.|+.++++++. +-+.+.+..-.++...+++.+.+.+.. -.+++++++++|..++..+....+++...+...
T Consensus 277 ~gl~y~~~s~~~~~~~~g~~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~t~~el~~ak~~l~~~~~~~~e~~~~~~~~~ 356 (406)
T 3eoq_A 277 KGLAEVASFGLEEADRAGTFHAYVQADPARKGEVLAVLQEELDRLGREGVGEEEVERAKTPLATGLVFAGETPMQRLFHL 356 (406)
T ss_dssp TTSEEEEEEEEEECSSCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred cCCeeEEEEEecccCCceEEEEEEEeCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 46655554331 224455544455677777777666554 469999999999999999987777777777776
Q ss_pred HHHhcc-CCCCCHHHHHhhhccCCHHHHHHHHHHHHhcceeEEEEeccCC
Q 006560 328 RLQVLC-QSFYDVDEKLSILHGLSLADLMAFIPELRSQLYIEGLCHGNLS 376 (640)
Q Consensus 328 ~~~~l~-~~~~~~~~~~~~l~~it~ed~~~~~~~~~~~~~~~~~v~Gni~ 376 (640)
....++ .......+..+.|+++|.+|++++.++++.+.+. ++++|+..
T Consensus 357 ~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~a~~~l~~~~~-~~vvGp~~ 405 (406)
T 3eoq_A 357 GMEYLYTGRYLSLEEVKARVQRVTSREVNALLERGFLEKGL-YYLVLPHG 405 (406)
T ss_dssp HHHHHHHSSCCCHHHHHHHHHHCCHHHHHHHHHTTTTTSCE-EEEEECCC
T ss_pred HHHHHhcCCCCCHHHHHHHHHhCCHHHHHHHHHHhcCcccE-EEEECCCC
Confidence 666555 3445677889999999999999999999999888 99999853
No 31
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ...
Probab=98.38 E-value=0.00012 Score=77.14 Aligned_cols=311 Identities=8% Similarity=-0.012 Sum_probs=166.4
Q ss_pred EEEEEcchhhhhcHHHHHHHHHHHHHHHHhCCCchHHHHHHHHhhhcccccCCCCChHHHHHHHHHh-CC-CCCccceee
Q 006560 11 VMSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGN-LL-IYPAEHVIY 88 (640)
Q Consensus 11 ~i~i~Lt~~G~~~~~~ii~~~~~~i~~l~~~~~~~~~~~e~~~~~~~~f~~~~~~~~~~~~~~la~~-l~-~~~~~~vl~ 88 (640)
.+.+....+ ++++.+..+ .+.+.+..++++.++..+.+....+.-.. .++...+...... +. ..|...-..
T Consensus 96 ~~~~~~~~~---~l~~~l~ll---~d~~~~p~f~~~~~~~ek~~v~~e~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (446)
T 1pp9_A 96 AYYIKALSK---DLPKAVELL---ADIVQNCSLEDSQIEKERDVILQELQEND-TSMRDVVFNYLHATAFQGTPLAQSVE 168 (446)
T ss_dssp EEEEEEEGG---GHHHHHHHH---HHHHHHBCCCHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTTTSGGGSCSS
T ss_pred EEEEEecHH---HHHHHHHHH---HHHHhCCCCCHHHHHHHHHHHHHHHHhhh-cCHHHHHHHHHHHHhcCCCCCCCCCc
Confidence 344444443 456766666 45566667887777655555544444222 2344444443332 21 122222222
Q ss_pred c-cccCccCCHHHHHHHH-hccCcCceEEEEEeCCCCCCCcCcccccccccceeecCChHHHHHhcCCCCCCCCCCCCCC
Q 006560 89 G-EYMYEVWDEEMIKHLL-GFFMPENMRIDVVSKSFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNPPEIDVSLQLPSQ 166 (640)
Q Consensus 89 ~-~~~~~~~d~~~i~~~l-~~l~p~n~~i~~~~~~~~~~~~~~~~~~~~~~Y~~~~i~~~~~~~~~~~~~~~~~~~lP~~ 166 (640)
| ...+..++.+.+.++. ++.+|+||.|+++++--.+ ... +.++++-. . +|..
T Consensus 169 G~~~~l~~~~~~~l~~f~~~~y~p~n~~l~v~Gd~~~~----~~~--------------~~i~~~f~-~-------~~~~ 222 (446)
T 1pp9_A 169 GPSENVRKLSRADLTEYLSRHYKAPRMVLAAAGGLEHR----QLL--------------DLAQKHFS-G-------LSGT 222 (446)
T ss_dssp CCHHHHHHCCHHHHHHHHHHHCCGGGEEEEEEESCCHH----HHH--------------HHHHHHHT-T-------SCSC
T ss_pred CCHHHHHhCCHHHHHHHHHhccCCCCEEEEEEcCCCHH----HHH--------------HHHHHHhc-c-------CCCC
Confidence 2 1223556788888888 5789999999987752200 000 11111111 0 1110
Q ss_pred CCccCCCccccccccCCCCCCCCCCeEeecCCceEEEeeccCcccCcceEEEEEEecCCCCCCHHHHHHHHHHHHHHHH-
Q 006560 167 NEFIPTDFSIRANDISNDLVTVTSPTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKD- 245 (640)
Q Consensus 167 N~~ip~~~~l~~~~~~~~~~~~~~P~~~~~~~g~~v~~~~d~~f~~P~~~i~~~~~~~~~~~~~~~~~~~~l~~~~l~~- 245 (640)
.+..+..+ +. .|. ..+.++.+.. .. .+...+.+.+..+... ++ ......++..+++.
T Consensus 223 ~~~~~~~~----~~---------~~~----~~~~~~~~~~-~~--~~~~~v~~~~~~~~~~-~~-d~~al~vl~~iLg~~ 280 (446)
T 1pp9_A 223 YDEDAVPT----LS---------PCR----FTGSQICHRE-DG--LPLAHVAIAVEGPGWA-HP-DNVALQVANAIIGHY 280 (446)
T ss_dssp CCSSCCCC----CC---------CCC----CCCEEEEEEE-TT--SSSEEEEEEEEECCTT-CT-HHHHHHHHHHHHCEE
T ss_pred CCCCcccc----CC---------CCC----CCCceEEEec-CC--ccceEEEEEEecCCCC-Cc-cHHHHHHHHHHhCCC
Confidence 00000000 00 000 0122232221 21 3456777777766432 33 23344555555531
Q ss_pred --------H----Hhhhhhccccc-ccEEEEEEe-cce-eEEEEeecCCCHHHHHHHHHHHhccC--CCCHHHHHHHHHH
Q 006560 246 --------E----LNEIIYQASVA-KLETSVSIF-SDK-LELKVYGFNDKLPVLLSKILAIAKSF--LPSDDRFKVIKED 308 (640)
Q Consensus 246 --------~----l~~~~~~a~~a-g~~~~~~~~-~~g-~~i~~~g~s~~l~~~l~~~~~~l~~~--~~~~~~f~~~k~~ 308 (640)
+ +........++ |........ ..| +.+.+..-.++...+++.+.+.+... .+++++++++|..
T Consensus 281 ~~~~~~g~~~~srL~~~lr~~glay~~~s~~~~~~~~g~~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~t~~el~~ak~~ 360 (446)
T 1pp9_A 281 DCTYGGGAHLSSPLASIAATNKLCQSFQTFNICYADTGLLGAHFVCDHMSIDDMMFVLQGQWMRLCTSATESEVLRGKNL 360 (446)
T ss_dssp ETTCSCGGGCSSHHHHHHHHHTCCSEEEEEEEECSSCEEEEEEEEECTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred cccCCCCCCCCCHHHHHHHhcCCeEEEEEecccCCCCeEEEEEEEECHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 1 11111111111 122222211 223 45555544457777777666555322 4999999999999
Q ss_pred HHHHHhccccCccchHHHHHHHh-ccCCCCCHHHHHhhhccCCHHHHHHHHHHHHhcceeEEEEeccCC
Q 006560 309 VVRTLKNTNMKPLSHSSYLRLQV-LCQSFYDVDEKLSILHGLSLADLMAFIPELRSQLYIEGLCHGNLS 376 (640)
Q Consensus 309 ~~~~l~~~~~~p~~~a~~~~~~~-l~~~~~~~~~~~~~l~~it~ed~~~~~~~~~~~~~~~~~v~Gni~ 376 (640)
++..+....++|...+....... +++......+..+.++++|.+|++++.++++.+.+..++++|+.+
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~vt~edv~~~a~~~~~~~~~~~~~~g~~~ 429 (446)
T 1pp9_A 361 LRNALVSHLDGTTPVCEDIGRSLLTYGRRIPLAEWESRIAEVDARVVREVCSKYFYDQCPAVAGFGPIE 429 (446)
T ss_dssp HHHHHHHHSCSHHHHHHHHHHHHHHTSSCCCHHHHHHHHHTCCHHHHHHHHHHHTTTCCCEEEEEESCT
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHcCCHHHHHHHHHHHcCCCCcEEEEECCcc
Confidence 99999877677776666655554 455455677778899999999999999999998888999999864
No 32
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A*
Probab=98.34 E-value=0.00011 Score=78.19 Aligned_cols=300 Identities=11% Similarity=0.006 Sum_probs=166.6
Q ss_pred cHHHHHHHHHHHHHHHHhCCCchHHHHHHHHhhhcccccCCCCChHHHHHHHHHhCCC--CCccceeec-cccCccCCHH
Q 006560 23 KIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFRFAEEQPQDDYAAELAGNLLI--YPAEHVIYG-EYMYEVWDEE 99 (640)
Q Consensus 23 ~~~~ii~~~~~~i~~l~~~~~~~~~~~e~~~~~~~~f~~~~~~~~~~~~~~la~~l~~--~~~~~vl~~-~~~~~~~d~~ 99 (640)
+++..++.+ .+.+...-++++.++..+......+.-.. ..|...+......+.+ .|...-+.| ...+..++.+
T Consensus 97 ~l~~~l~ll---~d~~~~p~f~~~~~~~er~~v~~e~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~~it~~ 172 (475)
T 1hr6_A 97 DVGKMLQLM---SETVRFPKITEQELQEQKLSAEYEIDEVW-MKPELVLPELLHTAAYSGETLGSPLICPRGLIPSISKY 172 (475)
T ss_dssp GHHHHHHHH---HHHHHCBCCCHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTTTSGGGSCSSCCGGGGGGCCHH
T ss_pred HHHHHHHHH---HHHHhCCCCCHHHHHHHHHHHHHHHHHhh-cCHHHHHHHHHHHHhcCCCCCCCCCcCCHHHHhhcCHH
Confidence 456666666 45566677888888766666655554322 2455555444433221 222222223 3446778999
Q ss_pred HHHHHH-hccCcCceEEEEEeCCCCCCCcCcccccccccceeecCChHHHHHhcCCCCCCCCCCCCCCCCccCCCccccc
Q 006560 100 MIKHLL-GFFMPENMRIDVVSKSFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNPPEIDVSLQLPSQNEFIPTDFSIRA 178 (640)
Q Consensus 100 ~i~~~l-~~l~p~n~~i~~~~~~~~~~~~~~~~~~~~~~Y~~~~i~~~~~~~~~~~~~~~~~~~lP~~N~~ip~~~~l~~ 178 (640)
.+.++. ++.+|+||.|++++ +... ... +.++++-. . +|...+-.+.
T Consensus 173 ~l~~f~~~~y~p~n~~l~v~G--~d~~---~~~--------------~~i~~~f~-~-------~~~~~~~~~~------ 219 (475)
T 1hr6_A 173 YLLDYRNKFYTPENTVAAFVG--VPHE---KAL--------------ELTGKYLG-D-------WQSTHPPITK------ 219 (475)
T ss_dssp HHHHHHHHHCCGGGEEEEEES--SCHH---HHH--------------HHHHHHHT-T-------CCCCCCCCCC------
T ss_pred HHHHHHHHhCCcccEEEEEeC--CCHH---HHH--------------HHHHHHhc-c-------CCCCCCCCCC------
Confidence 999999 58899999999886 4110 001 11111111 0 1110000000
Q ss_pred cccCCCCCCCCCCeEeecCCceEEEeecc--CcccCcceEEEEEEecCCCCCCHHHHHHHHHHHHHHHHH----------
Q 006560 179 NDISNDLVTVTSPTCIIDEPLIRFWYKLD--NTFKLPRANTYFRINLKGGYDNVKNCILTELFIHLLKDE---------- 246 (640)
Q Consensus 179 ~~~~~~~~~~~~P~~~~~~~g~~v~~~~d--~~f~~P~~~i~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---------- 246 (640)
.. ... .|..+.+..+ ..-..+...+.+.+..+.. .++ ......++..+++.+
T Consensus 220 ~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~-d~~~l~vl~~iLg~~~~f~~gg~g~ 283 (475)
T 1hr6_A 220 KV-------AQY-------TGGESCIPPAPVFGNLPELFHIQIGFEGLPI-DHP-DIYALATLQTLLGGGGSFSAGGPGK 283 (475)
T ss_dssp CC-------CCC-------CCEEEEECCCCCCSSSCCCEEEEEEEECCCT-TCT-THHHHHHHHHHHCEEESSCCSSTTS
T ss_pred CC-------CCC-------cCCeEEEecccccCCCccceEEEEEEecCCC-CCc-cHHHHHHHHHHhCCCcccccCCCCC
Confidence 00 000 0111111100 0001234566777764432 222 233345566666421
Q ss_pred -Hhhhhhccc--ccccEEEEEEe------cceeEEEEeecCCCHHHHHHHHHHHhcc------CCCCHHHHHHHHHHHHH
Q 006560 247 -LNEIIYQAS--VAKLETSVSIF------SDKLELKVYGFNDKLPVLLSKILAIAKS------FLPSDDRFKVIKEDVVR 311 (640)
Q Consensus 247 -l~~~~~~a~--~ag~~~~~~~~------~~g~~i~~~g~s~~l~~~l~~~~~~l~~------~~~~~~~f~~~k~~~~~ 311 (640)
+....+... -.|+.+++++. .+.+.+.+..-.+++..+++.+.+.+.. -.+++++|+++|..++.
T Consensus 284 ~~~s~L~~~lr~~~gl~y~v~s~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~t~~El~~ak~~l~~ 363 (475)
T 1hr6_A 284 GMYSRLYTHVLNQYYFVENCVAFNHSYSDSGIFGISLSCIPQAAPQAVEVIAQQMYNTFANKDLRLTEDEVSRAKNQLKS 363 (475)
T ss_dssp CTTSHHHHHTTTTCSSEEEEEEEEEECSSCEEEEEEEEECGGGHHHHHHHHHHHHHTTTTCTTSCCCHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHhcCCeeEEEEeccccCCCceEEEEEEeCHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Confidence 112222111 12454444322 2335566655555777777777666644 34999999999999999
Q ss_pred HHhccccCccchHHHHHHHh-ccCCCCCHHHHHhhhccCCHHHHHHHHHHHHhc---------ceeEEEEeccC
Q 006560 312 TLKNTNMKPLSHSSYLRLQV-LCQSFYDVDEKLSILHGLSLADLMAFIPELRSQ---------LYIEGLCHGNL 375 (640)
Q Consensus 312 ~l~~~~~~p~~~a~~~~~~~-l~~~~~~~~~~~~~l~~it~ed~~~~~~~~~~~---------~~~~~~v~Gni 375 (640)
.+....+++...+....... .++......+..+.++++|.+|++++.++++.+ .+..++++|+.
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~vt~~dv~~~a~~~l~~~~~~~~~~~~~~~~~v~g~~ 437 (475)
T 1hr6_A 364 SLLMNLESKLVELEDMGRQVLMHGRKIPVNEMISKIEDLKPDDISRVAEMIFTGNVNNAGNGKGRATVVMQGDR 437 (475)
T ss_dssp HHHHHTTSHHHHHHHHHHHHHHHSCCCCHHHHHHHHHTCCHHHHHHHHHHHHTTCCCCTTCCCCCCEEEEESCG
T ss_pred HHHHhCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHcCCHHHHHHHHHHHhhhccccccccCCCcEEEEECCc
Confidence 99876667766666655544 344444567788999999999999999999987 58889999986
No 33
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A
Probab=98.32 E-value=1.3e-05 Score=74.26 Aligned_cols=157 Identities=11% Similarity=-0.029 Sum_probs=106.1
Q ss_pred cceEEEEEEecCCCCCCHHHHHHHHHHHHHHHHH----HhhhhhcccccccEEEEEEe------cceeEEEEeecCC-CH
Q 006560 213 PRANTYFRINLKGGYDNVKNCILTELFIHLLKDE----LNEIIYQASVAKLETSVSIF------SDKLELKVYGFND-KL 281 (640)
Q Consensus 213 P~~~i~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----l~~~~~~a~~ag~~~~~~~~------~~g~~i~~~g~s~-~l 281 (640)
+...+.+.+..|... ++ ......++..+|..+ +...... .|+.++++++ .+-+.+.+..-.+ +.
T Consensus 23 ~~~~v~~~~~~~~~~-~~-d~~al~vl~~iLggg~sSrL~~~lre---~gl~y~~~~~~~~~~~~g~~~i~~~~~~~~~~ 97 (197)
T 3ih6_A 23 GTPLVAAMYHLPAAG-SP-DFVGLDLAATILADTPSSRLYHALVP---TKLASGVFGFTMDQLDPGLAMFGAQLQPGMDQ 97 (197)
T ss_dssp CSCEEEEEEECCCTT-ST-THHHHHHHHHHHHSSTTSHHHHHHTT---TTSCSEEEEEEETTSSSCEEEEEEECCTTSCH
T ss_pred CCceEEEEEecCCCC-CC-cHHHHHHHHHHHcCCCCchHHHHHHh---cCceEEEEeccccccCCeEEEEEEEECCCCCH
Confidence 455677777776543 22 344556667777642 2222222 1443444322 1234455544445 47
Q ss_pred HHHHHHHHHHhcc---CCCCHHHHHHHHHHHHHHHhccccCccchHHHHHHHhccCCCCCHHHHHhhhccCCHHHHHHHH
Q 006560 282 PVLLSKILAIAKS---FLPSDDRFKVIKEDVVRTLKNTNMKPLSHSSYLRLQVLCQSFYDVDEKLSILHGLSLADLMAFI 358 (640)
Q Consensus 282 ~~~l~~~~~~l~~---~~~~~~~f~~~k~~~~~~l~~~~~~p~~~a~~~~~~~l~~~~~~~~~~~~~l~~it~ed~~~~~ 358 (640)
..+++.+.+.+.. -.+++++|+++|..++..+....+++...+.......+++.........+.++++|.+|++++.
T Consensus 98 ~~~~~~i~~~l~~l~~~~it~~el~~ak~~~~~~~~~~~~~~~~~a~~l~~~~~~g~~~~~~~~~~~i~~vT~~dv~~~a 177 (197)
T 3ih6_A 98 DKALQTLTATLESLSSKPFSQEELERARSKWLTAWQQTYADPEKVGVALSEAIASGDWRLFFLQRDRVREAKLDDVQRAA 177 (197)
T ss_dssp HHHHHHHHHHHHCTTTSCCCHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHTTCTTHHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCHHHHHHHH
Confidence 7777777766654 4699999999999999999877778877777776666664333456778999999999999999
Q ss_pred HHHHhcceeEEEEecc
Q 006560 359 PELRSQLYIEGLCHGN 374 (640)
Q Consensus 359 ~~~~~~~~~~~~v~Gn 374 (640)
++++.+.+..++++|.
T Consensus 178 ~~~l~~~~~~~~~~~P 193 (197)
T 3ih6_A 178 VAYLVRSNRTEGRYIP 193 (197)
T ss_dssp HHHSSGGGCEEEEECC
T ss_pred HHhCCccCeEEEEEeC
Confidence 9999998888888875
No 34
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis}
Probab=98.14 E-value=0.0015 Score=69.50 Aligned_cols=326 Identities=11% Similarity=0.057 Sum_probs=163.0
Q ss_pred EEEEcchhhhhcHHHHHHHHHHHHHHHHhCCCchHHHHHHHHhhhcccc-cCCCCChHHHHHHHHHhCC-CCCccceeec
Q 006560 12 MSIHLTDSGLEKIFDIIGFVYQYIKLLRQVSPQKWIFKELQDIGNMEFR-FAEEQPQDDYAAELAGNLL-IYPAEHVIYG 89 (640)
Q Consensus 12 i~i~Lt~~G~~~~~~ii~~~~~~i~~l~~~~~~~~~~~e~~~~~~~~f~-~~~~~~~~~~~~~la~~l~-~~~~~~vl~~ 89 (640)
+.+.+...-.+++++.+..+ .+.+.+..++++.++.-+........ +.+ .+.+.+. ...+. ..+..+...
T Consensus 116 y~~~~~~~~~~~l~~~l~ll---~d~~~~p~f~~~~~~~er~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~- 187 (492)
T 3go9_A 116 YSLSLPNNRPDLLKDALAWL---SDTAGNLAVSEQTVNAALNTATDPIATFPQ--NIQEPWW--RYRLKGSSLIGHDPG- 187 (492)
T ss_dssp EEEEECTTCHHHHHHHHHHH---HHHHHCCCCSHHHHHHHHTCSSCCEEESSS--CTTCHHH--HHHTTTSTTTTCCTT-
T ss_pred EEEECCCCcHHHHHHHHHHH---HHHHhCCCCCHHHHHHHHHHHHHHHHhccc--chhhHHH--HHHhccCCcccCCCc-
Confidence 34444432123556666666 56777778888877765553322222 222 1222111 11121 111111111
Q ss_pred cccCccCCHHHHHHHH-hccCcCceEEEEEeCCCCCCCcCcccccccccceeecCChHHHHHhcCCCCCCCCCCCCCCCC
Q 006560 90 EYMYEVWDEEMIKHLL-GFFMPENMRIDVVSKSFAKSQDFHYEPWFGSRYTEEDISPSLMELWRNPPEIDVSLQLPSQNE 168 (640)
Q Consensus 90 ~~~~~~~d~~~i~~~l-~~l~p~n~~i~~~~~~~~~~~~~~~~~~~~~~Y~~~~i~~~~~~~~~~~~~~~~~~~lP~~N~ 168 (640)
...+..++.+++.++. ++.+|+||.|++++.--.+ ...++. .+.+..|.. .. . .|.+-+
T Consensus 188 ~~~i~~it~~dL~~fy~~~Y~p~n~~l~vvGdvd~~----~~~~~i----------~~~f~~~~~-~~-~----~~~~~~ 247 (492)
T 3go9_A 188 QPVTQPVDVEKLKQFYQQWYTPDAMTLYVVGNVDSR----SIAAQI----------SKAFSELKG-KR-T----APAAVA 247 (492)
T ss_dssp CCCCSSCCHHHHHHHHHHHCCGGGEEEEEEESCCHH----HHHHHH----------HHHHTTCCC-CC-S----SCCCCC
T ss_pred hhhhhcCCHHHHHHHHHHhcCcCceEEEEEcCCCHH----HHHHHH----------HHHhhcCCC-CC-C----CCCCCC
Confidence 2346788999999999 6889999999988652100 000000 011112221 00 0 010000
Q ss_pred ccCCCccccccccCCCCCCCCCCeEeecCCceEEEeeccCcccCcceEEEEEEecCCCC-CCH---HHHHHHHHHHHHHH
Q 006560 169 FIPTDFSIRANDISNDLVTVTSPTCIIDEPLIRFWYKLDNTFKLPRANTYFRINLKGGY-DNV---KNCILTELFIHLLK 244 (640)
Q Consensus 169 ~ip~~~~l~~~~~~~~~~~~~~P~~~~~~~g~~v~~~~d~~f~~P~~~i~~~~~~~~~~-~~~---~~~~~~~l~~~~l~ 244 (640)
..+ |. ......++..+ .+...+.+.+..+... .+. +......++..++.
T Consensus 248 ~~~-------------------~~---~~~~~~~~~~~-----~~q~~v~l~~~~~~~~~~d~~~l~~~~~~~v~~~iLg 300 (492)
T 3go9_A 248 TLA-------------------PL---PPEPVSLMNEQ-----AAQDTLSLMWDTPWHPIQDSMALSRYWRSDLAREALF 300 (492)
T ss_dssp CCC-------------------CC---CSSCEEEEESS-----CSSEEEEEEEEEECCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred CCC-------------------CC---CCCceEEEcCC-----CCCcEEEEEecCCCCCcccHHHHHHHHHHHHHHHHHH
Confidence 000 00 01112222221 2344566666655432 221 12223345555554
Q ss_pred HHHhhhhhcccccccEEEEEEe----cceeEEEEeecCCCHHHHHHHHHHHhcc---CCCCHHHHHHHHHHHHHHHhccc
Q 006560 245 DELNEIIYQASVAKLETSVSIF----SDKLELKVYGFNDKLPVLLSKILAIAKS---FLPSDDRFKVIKEDVVRTLKNTN 317 (640)
Q Consensus 245 ~~l~~~~~~a~~ag~~~~~~~~----~~g~~i~~~g~s~~l~~~l~~~~~~l~~---~~~~~~~f~~~k~~~~~~l~~~~ 317 (640)
..+..........|+.++++++ .+...+.+.+-.++...+++.+.+.+.. -.+++++|+++|..++..+....
T Consensus 301 ~~L~~~lre~~~~gl~y~~~s~~~~~~~~~~~~i~~~~~~~~~a~~~i~~el~~l~~~g~te~EL~~aK~~~~~~l~~~~ 380 (492)
T 3go9_A 301 WHIKQVLEKNNQKNLKLGFDCRVQYQRAQCAIHLNTPVENLTANMTFVARELAALRANGLSQAEFDALMTQKNDQLSKLF 380 (492)
T ss_dssp HHHHHHHHHSCCTTCEEEEEEEEETTEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHhhccccccccCchhhhhhcceEEEEEcCcccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 4333221111234666665543 2233466666667777777766665554 47999999999999998876543
Q ss_pred c-----CccchHHHHHHHhccCCCC-CHHH---HH-hhhccCCHHHHHHHHHHHHhcceeEEEEeccCCHH-HHHHHHHH
Q 006560 318 M-----KPLSHSSYLRLQVLCQSFY-DVDE---KL-SILHGLSLADLMAFIPELRSQLYIEGLCHGNLSQE-EAIHISNI 386 (640)
Q Consensus 318 ~-----~p~~~a~~~~~~~l~~~~~-~~~~---~~-~~l~~it~ed~~~~~~~~~~~~~~~~~v~Gni~~~-~~~~l~~~ 386 (640)
. ++...+...+...+....+ +..+ .. +.++++|.+|++++.++++.+....++|.|.-..+ ....+...
T Consensus 381 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vT~edV~~~a~~~l~~~~~~vvvg~~~~~e~~~~~l~~~ 460 (492)
T 3go9_A 381 ATYARTDTDILMSQRLRSQQSGVVDIAPEQYQKLRQAFLSGLTLAELNRELKQQLSQDTTLVLMQPKGEPEVNVKALQEI 460 (492)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHTCCCBCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCEEEEEEETTSCCCCHHHHHHH
T ss_pred HHHHhcchHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhCCCCeEEEEcCCCCCCccHHHHHHH
Confidence 2 2334455544444433222 3333 23 45899999999999999999765544444433333 24445555
Q ss_pred HHhhcC
Q 006560 387 FKSIFS 392 (640)
Q Consensus 387 ~~~~l~ 392 (640)
+.+...
T Consensus 461 ~~~~~~ 466 (492)
T 3go9_A 461 YNGIMA 466 (492)
T ss_dssp HHHHHC
T ss_pred HHHHhC
Confidence 555443
No 35
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis}
Probab=97.99 E-value=0.00069 Score=70.59 Aligned_cols=159 Identities=9% Similarity=0.008 Sum_probs=97.4
Q ss_pred cceEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHhhhhhcc--cccccEEEEEEe---cce-eEEEEeecCCCHHHHHH
Q 006560 213 PRANTYFRINLKGGYDNVKNCILTELFIHLLKDELNEIIYQA--SVAKLETSVSIF---SDK-LELKVYGFNDKLPVLLS 286 (640)
Q Consensus 213 P~~~i~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~a--~~ag~~~~~~~~---~~g-~~i~~~g~s~~l~~~l~ 286 (640)
+...+.+.+..|..... .......++..+++.+.....+.. +-.|+.++++++ ..| +.+.+..-.+++..+++
T Consensus 253 ~~~~v~~~~~~~~~~~~-~~~~~~~vl~~iLg~~~~s~L~~~lRe~~glaY~v~~~~~~~~g~~~i~~~~~~~~~~~~~~ 331 (425)
T 3d3y_A 253 AQSKLNLAYNTDIYYGD-SYYFALQVFNGIFGGFPHSKLFMNVREKEHLAYYASSSIDTFRGFMTVQTGIDGKNRNQVLR 331 (425)
T ss_dssp SSEEEEEEEECCCCTTS-TTHHHHHHHHHHHTTSTTSHHHHHTTTTSCCCSEEEEEEETTTTEEEEEEEECGGGHHHHHH
T ss_pred cccEEEEEeecCCCCCC-chHHHHHHHHHHhCCChhhHHHHHHHHhcCeEEEEeccccccCceEEEEEecCHhhHHHHHH
Confidence 45677777776532322 233455666666643222211111 112443333322 123 44444433446776666
Q ss_pred HHHHHhc---cCCCCHHHHHHHHHHHHHHHhccccCccchHHHHHHHhcc-CCCCCHHHHHhhhccCCHHHHHHHHHHHH
Q 006560 287 KILAIAK---SFLPSDDRFKVIKEDVVRTLKNTNMKPLSHSSYLRLQVLC-QSFYDVDEKLSILHGLSLADLMAFIPELR 362 (640)
Q Consensus 287 ~~~~~l~---~~~~~~~~f~~~k~~~~~~l~~~~~~p~~~a~~~~~~~l~-~~~~~~~~~~~~l~~it~ed~~~~~~~~~ 362 (640)
.+.+.+. .-.+++++|+++|..++..+....++|...+.......++ +.........+.++++|.+|++++.++++
T Consensus 332 ~~~~~l~~l~~~~~~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~vt~edv~~~a~~~~ 411 (425)
T 3d3y_A 332 LISTELENIRLGKIRELEIEQTKAMLKNQYILALDNAGAWLEKEYLNELMPQTMLTAEEWIARINAVTIPEIQEVAKRLE 411 (425)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHSTTSCCCHHHHHHHHHHCCHHHHHHHHHHCE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhHHhcccCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhCCHHHHHHHHHhcc
Confidence 6655544 4469999999999999999887777777777766666666 44445677889999999999999999975
Q ss_pred hcceeEEEEecc
Q 006560 363 SQLYIEGLCHGN 374 (640)
Q Consensus 363 ~~~~~~~~v~Gn 374 (640)
+.+.. ++.|+
T Consensus 412 -~~~~~-~v~g~ 421 (425)
T 3d3y_A 412 -LQAIF-FLEGE 421 (425)
T ss_dssp -EEEEE-EEEEE
T ss_pred -CceEE-EEeCC
Confidence 44444 55554
No 36
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*
Probab=96.01 E-value=0.058 Score=54.26 Aligned_cols=94 Identities=7% Similarity=0.021 Sum_probs=60.5
Q ss_pred hHHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHhcCCCCChhHHHHHHHHHHhccccccccchHhHHHHhcCCHHHH
Q 006560 503 YLQERIDNFISGLDELLEGLDDESFE-NYRSGLMAKLLEKDPSLTYESNRFWNQITDKRYMFDQSQKEAEDLKSIKKNDV 581 (640)
Q Consensus 503 ~~~~~i~~fl~~~~~~l~~~se~ef~-~~k~~l~~~~~~~~~sl~~~~~~~w~~i~~~~~~f~~~~~~~~~l~~vT~~dv 581 (640)
.+...++-+.+.+.. -.+++++|+ +.|..++..+....++....+.........++ .+.+.- ..+.|+++|.+|+
T Consensus 81 ~l~~~l~ll~d~~~~--p~f~~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~~~~-p~~~~~-~~~~l~~it~~~l 156 (352)
T 3cx5_B 81 DLPYYVNALADVLYK--TAFKPHELTESVLPAARYDYAVAEQCPVKSAEDQLYAITFRK-GLGNPL-LYDGVERVSLQDI 156 (352)
T ss_dssp GHHHHHHHHHHHHHH--BCCCHHHHHHTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TTTSCS-SCCSSSCCCHHHH
T ss_pred hHHHHHHHHHHHHhC--CCCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCCCcc-chhhhccCCHHHH
Confidence 444444444333322 578999998 99988888877655555555444333332221 222211 2467889999999
Q ss_pred HHHHHHHcccCCCCcceEEEEEec
Q 006560 582 ISWYKTYLQQWSPKCRRLAVRVWG 605 (640)
Q Consensus 582 ~~~~~~~l~~~~~~~~~l~i~v~g 605 (640)
.+|+++++.|+ .+.+.++|
T Consensus 157 ~~f~~~~y~~~-----n~~l~v~G 175 (352)
T 3cx5_B 157 KDFADKVYTKE-----NLEVSGEN 175 (352)
T ss_dssp HHHHHHHCCGG-----GEEEEEES
T ss_pred HHHHHHhCCcC-----cEEEEEeC
Confidence 99999999874 67788888
Done!