Query 006561
Match_columns 640
No_of_seqs 161 out of 219
Neff 4.3
Searched_HMMs 46136
Date Thu Mar 28 11:12:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006561.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006561hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04782 DUF632: Protein of un 100.0 2E-113 5E-118 891.3 34.0 311 209-557 1-312 (312)
2 cd07307 BAR The Bin/Amphiphysi 86.6 21 0.00045 33.1 13.4 102 330-431 81-186 (194)
3 PF03114 BAR: BAR domain; Int 79.8 54 0.0012 31.6 13.6 92 332-431 121-219 (229)
4 smart00721 BAR BAR domain. 77.8 40 0.00087 33.4 12.4 86 342-427 137-224 (239)
5 cd07599 BAR_Rvs167p The Bin/Am 73.0 1.1E+02 0.0024 30.8 14.2 69 460-540 16-85 (216)
6 cd07596 BAR_SNX The Bin/Amphip 68.6 56 0.0012 31.7 10.6 56 349-404 120-176 (218)
7 cd07673 F-BAR_FCHO2 The F-BAR 67.1 1.7E+02 0.0038 30.8 15.0 83 330-421 118-200 (269)
8 KOG0251 Clathrin assembly prot 65.3 2.2E+02 0.0048 33.1 15.9 187 393-633 59-261 (491)
9 PF09325 Vps5: Vps5 C terminal 64.9 76 0.0016 31.7 11.0 90 350-439 139-229 (236)
10 cd07637 BAR_ACAP3 The Bin/Amph 63.4 1.8E+02 0.0039 29.7 13.4 25 539-563 55-79 (200)
11 cd07651 F-BAR_PombeCdc15_like 62.9 73 0.0016 32.5 10.6 70 347-421 122-200 (236)
12 cd07653 F-BAR_CIP4-like The F- 62.6 1.4E+02 0.003 30.5 12.6 118 476-632 28-153 (251)
13 cd07591 BAR_Rvs161p The Bin/Am 62.3 1.8E+02 0.0038 30.1 13.2 58 460-539 25-82 (224)
14 cd07657 F-BAR_Fes_Fer The F-BA 61.8 1.4E+02 0.0029 31.2 12.4 118 469-630 21-151 (237)
15 cd07648 F-BAR_FCHO The F-BAR ( 61.8 70 0.0015 33.1 10.4 50 348-397 125-174 (261)
16 cd07600 BAR_Gvp36 The Bin/Amph 61.4 2.1E+02 0.0046 30.1 13.8 135 473-638 36-173 (242)
17 cd07636 BAR_GRAF The Bin/Amphi 60.6 2.1E+02 0.0046 29.6 14.4 42 459-500 15-56 (207)
18 PF10475 DUF2450: Protein of u 58.1 2.5E+02 0.0055 29.7 14.3 120 354-486 85-207 (291)
19 PF13805 Pil1: Eisosome compon 57.9 2.7E+02 0.0059 30.0 15.6 102 360-475 152-265 (271)
20 cd07686 F-BAR_Fer The F-BAR (F 52.9 3E+02 0.0065 28.9 13.5 51 327-379 7-61 (234)
21 COG5085 Predicted membrane pro 52.3 17 0.00037 37.6 3.9 39 521-559 146-187 (230)
22 KOG4503 Uncharacterized conser 52.3 17 0.00037 37.6 3.9 39 521-559 146-187 (230)
23 cd07659 BAR_PICK1 The Bin/Amph 51.3 2.1E+02 0.0046 29.9 11.5 105 397-501 2-123 (215)
24 cd07602 BAR_RhoGAP_OPHN1-like 49.3 3.2E+02 0.0069 28.3 15.3 70 460-563 16-85 (207)
25 smart00872 Alpha-mann_mid Alph 45.9 65 0.0014 27.5 6.0 52 377-433 7-58 (79)
26 cd07659 BAR_PICK1 The Bin/Amph 45.6 1.4E+02 0.003 31.2 9.2 65 345-409 105-169 (215)
27 cd07676 F-BAR_FBP17 The F-BAR 43.2 3.9E+02 0.0084 28.2 12.3 120 476-632 28-155 (253)
28 cd07618 BAR_Rich1 The Bin/Amph 43.2 4.3E+02 0.0094 28.0 12.9 24 456-479 210-233 (246)
29 PRK11546 zraP zinc resistance 42.7 66 0.0014 31.5 6.1 50 350-408 54-103 (143)
30 PF12408 DUF3666: Ribose-5-pho 38.4 22 0.00049 28.8 1.9 28 207-234 4-31 (48)
31 cd07603 BAR_ACAPs The Bin/Amph 37.6 4.6E+02 0.0099 26.7 14.2 64 460-563 16-79 (200)
32 smart00509 TFS2N Domain in the 35.9 97 0.0021 26.7 5.5 55 375-431 18-74 (75)
33 PF02970 TBCA: Tubulin binding 35.8 2.6E+02 0.0057 25.0 8.4 53 352-404 20-79 (90)
34 PF08285 DPM3: Dolichol-phosph 35.6 36 0.00078 30.8 2.9 36 595-631 52-87 (91)
35 cd07627 BAR_Vps5p The Bin/Amph 34.7 4E+02 0.0086 27.0 10.6 74 349-422 118-199 (216)
36 cd07678 F-BAR_FCHSD1 The F-BAR 34.5 68 0.0015 34.2 5.2 36 590-629 119-154 (263)
37 cd07674 F-BAR_FCHO1 The F-BAR 33.9 5.3E+02 0.011 27.0 11.6 52 348-406 125-176 (261)
38 cd07675 F-BAR_FNBP1L The F-BAR 33.5 5.6E+02 0.012 27.3 11.7 38 591-632 117-154 (252)
39 cd07633 BAR_OPHN1 The Bin/Amph 33.3 5.8E+02 0.013 26.6 14.0 69 461-563 17-85 (207)
40 cd07634 BAR_GAP10-like The Bin 31.3 6.2E+02 0.013 26.3 14.1 41 460-500 16-56 (207)
41 PF09241 Herp-Cyclin: Herpesvi 29.5 29 0.00063 31.3 1.3 14 408-421 18-31 (106)
42 PF12325 TMF_TATA_bd: TATA ele 29.5 3.6E+02 0.0078 25.6 8.6 84 326-409 20-104 (120)
43 KOG2008 BTK-associated SH3-dom 27.8 3.3E+02 0.0072 30.3 9.0 81 326-409 149-233 (426)
44 cd07635 BAR_GRAF2 The Bin/Amph 27.2 7.2E+02 0.016 25.8 14.7 41 460-500 16-56 (207)
45 cd07647 F-BAR_PSTPIP The F-BAR 27.1 7E+02 0.015 25.6 12.4 73 326-399 82-172 (239)
46 PF10368 YkyA: Putative cell-w 27.0 4.7E+02 0.01 26.8 9.6 104 326-441 36-143 (204)
47 PF08655 DASH_Ask1: DASH compl 26.8 1.8E+02 0.0038 25.2 5.4 49 383-431 2-56 (66)
48 cd07656 F-BAR_srGAP The F-BAR 25.8 7.8E+02 0.017 25.7 13.9 142 458-634 13-160 (241)
49 cd07655 F-BAR_PACSIN The F-BAR 25.6 6.4E+02 0.014 26.4 10.5 18 347-364 134-151 (258)
50 PF09321 DUF1978: Domain of un 25.5 8.5E+02 0.018 26.0 12.6 76 413-491 94-178 (241)
51 KOG0972 Huntingtin interacting 24.3 2.7E+02 0.0058 30.7 7.5 55 373-435 241-295 (384)
52 cd07676 F-BAR_FBP17 The F-BAR 24.2 6.6E+02 0.014 26.4 10.4 96 327-423 98-216 (253)
53 TIGR03545 conserved hypothetic 23.8 1.3E+03 0.027 27.4 14.3 142 327-490 165-311 (555)
54 PF15290 Syntaphilin: Golgi-lo 23.8 8.8E+02 0.019 26.6 11.1 82 379-487 67-152 (305)
55 PF06456 Arfaptin: Arfaptin-li 23.3 8.6E+02 0.019 25.3 11.4 80 344-430 135-226 (229)
56 cd07671 F-BAR_PSTPIP1 The F-BA 23.0 5.7E+02 0.012 26.8 9.5 69 348-428 122-192 (242)
57 cd07685 F-BAR_Fes The F-BAR (F 22.7 9.5E+02 0.021 25.6 14.1 124 473-632 25-158 (237)
58 PF10428 SOG2: RAM signalling 22.3 8.2E+02 0.018 28.0 11.3 91 338-432 301-405 (445)
59 smart00146 PI3Kc Phosphoinosit 22.2 82 0.0018 31.5 3.1 86 404-499 8-102 (202)
60 cd07610 FCH_F-BAR The Extended 21.7 7.2E+02 0.016 23.8 12.4 90 331-429 88-178 (191)
61 cd00183 TFIIS_I N-terminal dom 21.5 2.3E+02 0.005 24.2 5.3 56 373-430 18-75 (76)
62 cd07639 BAR_ACAP1 The Bin/Amph 20.7 9.4E+02 0.02 24.8 12.7 35 461-495 17-51 (200)
63 cd07638 BAR_ACAP2 The Bin/Amph 20.4 9.5E+02 0.021 24.7 13.5 25 539-563 55-79 (200)
64 COG1579 Zn-ribbon protein, pos 20.3 4.5E+02 0.0098 27.9 8.1 75 330-407 5-79 (239)
65 PF13325 MCRS_N: N-terminal re 20.2 1.1E+02 0.0024 31.5 3.6 54 420-473 116-195 (199)
66 cd03568 VHS_STAM VHS domain fa 20.1 5.6E+02 0.012 24.7 8.2 39 457-497 93-131 (144)
No 1
>PF04782 DUF632: Protein of unknown function (DUF632); InterPro: IPR006867 This conserved region contains a leucine zipper-like domain. The proteins are found only in plants and their functions are unknown.
Probab=100.00 E-value=2.2e-113 Score=891.30 Aligned_cols=311 Identities=49% Similarity=0.791 Sum_probs=286.0
Q ss_pred cHHHHHHHHHHHHHHHhccCCccchhhhcccCCCCCcccccCCCchhhhhhhhhhccCCCCCCCCCCccccccccccccc
Q 006561 209 DFFSSMKDIELLFIKASDSGKEVPRMLEANKLHFRPIFEEKDSDSMASTILKACFSCGEDPPQVQEEPVQTDVKYLTWHR 288 (640)
Q Consensus 209 dL~evvKEIe~~F~kAseSG~EVS~mLEa~K~~y~~~~~~k~~~s~~s~~l~~~~~c~~~~~~~~~~p~~~~vk~itW~r 288 (640)
||++||||||+||+|||+||+|||+||||+|++||+++..... ...++.+++++++|+|
T Consensus 1 dl~ev~kei~~~F~kAs~sg~eVs~lLE~~k~~~~~~~~~~~~---------------------~~~~s~~~~~~~~w~~ 59 (312)
T PF04782_consen 1 DLLEVVKEIDDYFLKASESGKEVSRLLEAGKIHYHSNFSDLKG---------------------KVDHSSRVLSPISWSR 59 (312)
T ss_pred CHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCCCCCcccccccc---------------------cccchhhhccccccCC
Confidence 7999999999999999999999999999999999998765211 0122344567889999
Q ss_pred cccCCCCCCCCCCCCCCCcccccccCCccCcccccccchHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhc
Q 006561 289 TTSSRSSSSRNPLGANSKDDVEDLTGDIFDSIHMISSSHASTLDRLYAWERKLYDEVKASEMIRREYDSKCRILRQLESK 368 (640)
Q Consensus 289 S~SS~sssS~~pl~~~~~~d~~~~~~d~~ee~~m~sgSHSSTLdKLYAWEKKLYdEVKa~E~lRi~YeKKc~~Lr~qd~k 368 (640)
|++|+. .+..++++++.||.+|+||||||||||||||||+|||++|+||++|||||++||+||+|
T Consensus 60 s~~s~~---------------~~~~~~~~~~~~~~~gshssTLdkLyaWEKKLY~EVKa~E~~r~~yeKK~~~Lr~~d~k 124 (312)
T PF04782_consen 60 SSSSRI---------------SNSDSDFDEEECMGSGSHSSTLDKLYAWEKKLYDEVKAEEKLRIEYEKKCKQLRKQDAK 124 (312)
T ss_pred CCCCcc---------------cccccCcCcccCcccchHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHhC
Confidence 877641 11233455778999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhHhHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccCC
Q 006561 369 GVSSHKIDKTRAVVKDLHSRIKVAIHRIDSISKRIEELRDKELQPQLEDLIEGLSRMWEVMFECHKLQFQVISVAYNNAH 448 (640)
Q Consensus 369 Gad~~kIDKTRa~Vk~L~TrI~VaIqsVdsiS~~I~kLRDEEL~PQL~ELI~GL~rMWk~MlECHq~Q~~ii~~a~~~~~ 448 (640)
|+++.+|||||++|++|||||+|+||+||+||++|+|||||||||||+|||+||+||||+|+||||+|++||+++++++.
T Consensus 125 g~~~~kidkTra~v~~L~tri~Vaiq~v~siS~~I~kLRDeEL~PQL~eLi~Gl~~MWk~M~ecHq~Q~~ii~~~k~l~~ 204 (312)
T PF04782_consen 125 GADSSKIDKTRASVKDLHTRIRVAIQSVDSISKRIEKLRDEELYPQLVELIQGLMRMWKSMLECHQKQFQIIQEAKSLDS 204 (312)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999997766
Q ss_pred C-cccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCCcccccCCCCCCCCCCCCCCchHHHH
Q 006561 449 S-KISIKSDSHRQITIHLENELSSLSSSFTKWISAQKFYLQAINNWLVKCVSLPQKSSRRKRRVPAPPPLRNFGPPIYAT 527 (640)
Q Consensus 449 ~-~~~~tse~hrqaT~qLE~El~~W~ssF~~wI~aQK~YV~aLngWL~~cl~~~~e~~~~~~~~~s~~P~r~~aPpIf~l 527 (640)
. ...+++++||+||+|||.||++|++||++||++||+||+||||||++||.++++.++++++++| |++.++||||+|
T Consensus 205 ~~~~~~~s~~h~~at~~Le~el~~W~~sF~~~i~~Qk~YV~aLn~WL~~~l~~~~~~~~~~~~~~s--p~~~~aPpIf~l 282 (312)
T PF04782_consen 205 SPSNEPTSESHRQATLQLEAELQNWHSSFCKWIKAQKSYVKALNGWLKLCLMQEPEETSDGRPPSS--PRRSGAPPIFVL 282 (312)
T ss_pred cccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCC--ccccCCCcHHHH
Confidence 5 4689999999999999999999999999999999999999999999999999988998888877 889999999999
Q ss_pred HHHHHHhhccCChHHHHHHHHHHHHHHhhH
Q 006561 528 CSVWLDLLDWLPSKELTDSIKSLASETSHF 557 (640)
Q Consensus 528 C~~W~~aLdrLp~k~v~~AIksFa~~v~~l 557 (640)
|++|+++||+||+++|++|||+|+++||+|
T Consensus 283 C~~W~~aLd~lp~k~v~~AIk~f~~~v~~i 312 (312)
T PF04782_consen 283 CNDWSQALDRLPDKEVSEAIKSFAAVVHHI 312 (312)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999986
No 2
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=86.59 E-value=21 Score=33.07 Aligned_cols=102 Identities=19% Similarity=0.289 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHhhhhcCCCchhhHhHHHHHHHHhhHHHHHHHHHHHHHHHhhh
Q 006561 330 TLDRLYAWERKLYDEV----KASEMIRREYDSKCRILRQLESKGVSSHKIDKTRAVVKDLHSRIKVAIHRIDSISKRIEE 405 (640)
Q Consensus 330 TLdKLYAWEKKLYdEV----Ka~E~lRi~YeKKc~~Lr~qd~kGad~~kIDKTRa~Vk~L~TrI~VaIqsVdsiS~~I~k 405 (640)
-++-|-.|-++.+..| |.-++.|..||.....+.++-.++.+..++..+...+.....+..-.-.-+-..-..+..
T Consensus 81 v~~pL~~~~~~~~~~~~~~~k~~~~~~~~yd~~~~k~~~~~~~~~~~~~l~~~~~~~~~ar~~y~~~~~~~~~~l~~~~~ 160 (194)
T cd07307 81 VIEPLKEYLKKDLKEIKKRRKKLDKARLDYDAAREKLKKLRKKKKDSSKLAEAEEELQEAKEKYEELREELIEDLNKLEE 160 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566654444444 477889999999999999888777666677666666666655555443333333334444
Q ss_pred hhccchhhHHHHHHHHHHHhHHHHHH
Q 006561 406 LRDKELQPQLEDLIEGLSRMWEVMFE 431 (640)
Q Consensus 406 LRDEEL~PQL~ELI~GL~rMWk~MlE 431 (640)
-|-.++.+.|..+++.....|+.+++
T Consensus 161 ~~~~~~~~~L~~~~~~q~~~~~~~~~ 186 (194)
T cd07307 161 KRKELFLSLLLSFIEAQSEFFKEVLK 186 (194)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhHHH
Confidence 44456788888888887777776654
No 3
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=79.76 E-value=54 Score=31.57 Aligned_cols=92 Identities=24% Similarity=0.415 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHH----HHhhHHHHHHHHHHHHHHHhhhhcCCC---chhhHhHHHHHHHHhhHHHHHHHHHHHHHHHhh
Q 006561 332 DRLYAWERKLYDE----VKASEMIRREYDSKCRILRQLESKGVS---SHKIDKTRAVVKDLHSRIKVAIHRIDSISKRIE 404 (640)
Q Consensus 332 dKLYAWEKKLYdE----VKa~E~lRi~YeKKc~~Lr~qd~kGad---~~kIDKTRa~Vk~L~TrI~VaIqsVdsiS~~I~ 404 (640)
+.|--+= +.|++ +|..+..|+.||+-...+.++..++.. ..+++.++..-..+...+.-.+.. |.
T Consensus 121 ~pl~~~~-~~~~~i~~~~kkr~~~~ldyd~~~~k~~k~~~~~~~~~~~~~l~~a~~~f~~~~~~l~~~l~~-------l~ 192 (229)
T PF03114_consen 121 DPLKEFL-KEFKEIKKLIKKREKKRLDYDSARSKLEKLRKKKSKSSKEEKLEEAKEEFEALNEELKEELPK-------LF 192 (229)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTSSBTHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH
T ss_pred HHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHH-------HH
Confidence 4444443 44444 447788899999999999988866654 456666666666666666655553 45
Q ss_pred hhhccchhhHHHHHHHHHHHhHHHHHH
Q 006561 405 ELRDKELQPQLEDLIEGLSRMWEVMFE 431 (640)
Q Consensus 405 kLRDEEL~PQL~ELI~GL~rMWk~MlE 431 (640)
..|.+-|-|+|..+|.......+.+++
T Consensus 193 ~~~~~~l~~~l~~~i~~q~~~~~~~~~ 219 (229)
T PF03114_consen 193 AKRQDILEPCLQSFIEAQLQYFQQLYQ 219 (229)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577777889999999987766666554
No 4
>smart00721 BAR BAR domain.
Probab=77.82 E-value=40 Score=33.39 Aligned_cols=86 Identities=15% Similarity=0.119 Sum_probs=55.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHhhhhcCCCch--hhHhHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhccchhhHHHHHH
Q 006561 342 YDEVKASEMIRREYDSKCRILRQLESKGVSSH--KIDKTRAVVKDLHSRIKVAIHRIDSISKRIEELRDKELQPQLEDLI 419 (640)
Q Consensus 342 YdEVKa~E~lRi~YeKKc~~Lr~qd~kGad~~--kIDKTRa~Vk~L~TrI~VaIqsVdsiS~~I~kLRDEEL~PQL~ELI 419 (640)
-+.+|--+..|+.||..-..|.++..++.... ++.+++..++....+..-.-.-+-.---.+...|.+.+.|+|..|+
T Consensus 137 ~~~~kk~~~~~lDyD~~~~kl~~~~~~~~~~~~~kl~~~e~el~~ak~~fe~~~~~l~~~l~~l~~~~~~~~~~~l~~~~ 216 (239)
T smart00721 137 KKARKKLERKLLDYDSARHKLKKAKKSKEKKKDEKLAKAEEELRKAKQEFEESNAQLVEELPQLVASRVDFFVNCLQALI 216 (239)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHH
Confidence 34456788999999999988877755543322 6666666666666666554444444444555666667888888888
Q ss_pred HHHHHhHH
Q 006561 420 EGLSRMWE 427 (640)
Q Consensus 420 ~GL~rMWk 427 (640)
..-..-.+
T Consensus 217 ~aq~~y~~ 224 (239)
T smart00721 217 EAQLNFHR 224 (239)
T ss_pred HHHHHHHH
Confidence 76554443
No 5
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=72.96 E-value=1.1e+02 Score=30.83 Aligned_cols=69 Identities=13% Similarity=0.102 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCCcccccCCCCCCCCCCCC-CCchHHHHHHHHHHhhccC
Q 006561 460 QITIHLENELSSLSSSFTKWISAQKFYLQAINNWLVKCVSLPQKSSRRKRRVPAPPPLRN-FGPPIYATCSVWLDLLDWL 538 (640)
Q Consensus 460 qaT~qLE~El~~W~ssF~~wI~aQK~YV~aLngWL~~cl~~~~e~~~~~~~~~s~~P~r~-~aPpIf~lC~~W~~aLdrL 538 (640)
..+..|-.++..|..++....++|..+++++.+=.. ++....+. ++.. ..+-....|.+|...+..|
T Consensus 16 ~~~~kL~k~~k~y~~a~~~l~~~~~~~~~~~~~ly~-p~~~~~~~-----------~~~~~~~~~~~~~~~~y~~~~~~l 83 (216)
T cd07599 16 KSLKKLIEQSKAFRDSWRSILTHQIAFAKEFAELYD-PIVGPKES-----------VGSHPAPESTLARLSRYVKALEEL 83 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CcCCCCcC-----------cCCCCCcHHHHHHHHHHHHHHHHH
Confidence 467789999999999999999999999999887554 22211110 1111 1355678889999998888
Q ss_pred Ch
Q 006561 539 PS 540 (640)
Q Consensus 539 p~ 540 (640)
-.
T Consensus 84 ~~ 85 (216)
T cd07599 84 KK 85 (216)
T ss_pred HH
Confidence 43
No 6
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=68.56 E-value=56 Score=31.69 Aligned_cols=56 Identities=20% Similarity=0.342 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHhhhhcCC-CchhhHhHHHHHHHHhhHHHHHHHHHHHHHHHhh
Q 006561 349 EMIRREYDSKCRILRQLESKGV-SSHKIDKTRAVVKDLHSRIKVAIHRIDSISKRIE 404 (640)
Q Consensus 349 E~lRi~YeKKc~~Lr~qd~kGa-d~~kIDKTRa~Vk~L~TrI~VaIqsVdsiS~~I~ 404 (640)
+.+.....+|-.+|-++...+. ...+|++.+..|..++.++..+..-.+.|+..|.
T Consensus 120 ~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i~~~~~ 176 (218)
T cd07596 120 QSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEEISERLK 176 (218)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556777777777777665 7789999999999999999999999999888765
No 7
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=67.08 E-value=1.7e+02 Score=30.84 Aligned_cols=83 Identities=14% Similarity=0.251 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhcCCCchhhHhHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhcc
Q 006561 330 TLDRLYAWERKLYDEVKASEMIRREYDSKCRILRQLESKGVSSHKIDKTRAVVKDLHSRIKVAIHRIDSISKRIEELRDK 409 (640)
Q Consensus 330 TLdKLYAWEKKLYdEVKa~E~lRi~YeKKc~~Lr~qd~kGad~~kIDKTRa~Vk~L~TrI~VaIqsVdsiS~~I~kLRDE 409 (640)
+++.+..| .+++ ++-++-|..|+..|+..-++-.-|+....|||++.-+++....+..+++..+.+-. +=+
T Consensus 118 ~~~~~~~~-~~~~---~~~~KaK~~Y~~~c~e~e~~~~~~~t~k~leK~~~k~~ka~~~Y~~~v~~l~~~~~-----~~~ 188 (269)
T cd07673 118 TLEAVQNI-QSIT---QALQKSKENYNAKCLEQERLKKEGATQREIEKAAVKSKKATESYKLYVEKYALAKA-----DFE 188 (269)
T ss_pred HHHHHHHH-HHHH---HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH
Confidence 44444444 3333 45567799999999877666555566677777777777766666666666554311 335
Q ss_pred chhhHHHHHHHH
Q 006561 410 ELQPQLEDLIEG 421 (640)
Q Consensus 410 EL~PQL~ELI~G 421 (640)
+-+|+..+-+|-
T Consensus 189 ~~m~~~~~~~Q~ 200 (269)
T cd07673 189 QKMTETAQKFQD 200 (269)
T ss_pred HHHHHHHHHHHH
Confidence 666776666654
No 8
>KOG0251 consensus Clathrin assembly protein AP180 and related proteins, contain ENTH domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=65.30 E-value=2.2e+02 Score=33.07 Aligned_cols=187 Identities=12% Similarity=0.096 Sum_probs=98.6
Q ss_pred HHHHHHHHHHhhhhhccchhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCcccCCChhHHHHHHHHHHHHHHH
Q 006561 393 IHRIDSISKRIEELRDKELQPQLEDLIEGLSRMWEVMFECHKLQFQVISVAYNNAHSKISIKSDSHRQITIHLENELSSL 472 (640)
Q Consensus 393 IqsVdsiS~~I~kLRDEEL~PQL~ELI~GL~rMWk~MlECHq~Q~~ii~~a~~~~~~~~~~tse~hrqaT~qLE~El~~W 472 (640)
-..|+++|.|+++=||==.-=.-+=|||+|++ |-...-.-...+........-..+.+ ..-
T Consensus 59 ~~~v~aLs~Rl~~TrnW~VAlKsLIliH~ll~--------~G~~~f~~~l~~~~~~l~lS~F~d~s-----------~~~ 119 (491)
T KOG0251|consen 59 PSCVHALSERLNKTRNWTVALKALILIHRLLK--------EGDPSFEQELLSRNLILNLSDFRDKS-----------SSL 119 (491)
T ss_pred HHHHHHHHHHhCCCcceeehHHHHHHHHHHHh--------cCcHHHHHHHHhcccccchhhhhccc-----------ccc
Confidence 36678888888888876555555566666554 22111111111111111111111111 111
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhhcCCCCcccccCCCCCCCCCCCCCCchHHHHHH--HHHHhhccC----------Ch
Q 006561 473 SSSFTKWISAQKFYLQAINNWLVKCVSLPQKSSRRKRRVPAPPPLRNFGPPIYATCS--VWLDLLDWL----------PS 540 (640)
Q Consensus 473 ~ssF~~wI~aQK~YV~aLngWL~~cl~~~~e~~~~~~~~~s~~P~r~~aPpIf~lC~--~W~~aLdrL----------p~ 540 (640)
.--|+.||-..-.|+.-.-.|.+.+-....... ++++-. -.+...|+...|=. -|+.-||+| ..
T Consensus 120 ~~d~safVR~Ya~YLderl~~~~~~~~d~~~~~-~~~~k~---~~~~~~~~~~~l~~i~~LQ~lld~ll~~~p~~~~~~N 195 (491)
T KOG0251|consen 120 TWDMSAFVRTYALYLDERLECYRVLGFDIEKVK-RGKEKT---KDRSSKSTDKLLKTIPKLQNLLDRLLKCRPTGSALNN 195 (491)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHhcccccccc-Cccccc---ccccccchHHHHHHHHHHHHHHHHHHcCCCCchhhcC
Confidence 335788998888999998889887766543211 110000 11112233332222 244444444 22
Q ss_pred HHHHHHHHHHHHHHhhHhHhhhhhhcCCCChhhhhhhccccccccccchhhhhccHHHHHHHHhhh----hHHHHHHHHH
Q 006561 541 KELTDSIKSLASETSHFLPRQEKNQGKSGSETAVNLLADDASEDWISGFDRFRSSLVGFLGQLNNF----SENSVQMYAD 616 (640)
Q Consensus 541 k~v~~AIksFa~~v~~l~~qQe~~~~kk~~~~~~~~~~~~~~~~~~~~~~~Lq~~L~~~l~aL~~F----s~~S~k~Yee 616 (640)
..|..|+.-++.+.-.|+ ..++.++..+|++.-.. +..++++|..
T Consensus 196 ~lI~~A~~lvvkdsf~ly-------------------------------~~i~~gi~~Llekffem~~~~a~~al~iykr 244 (491)
T KOG0251|consen 196 GLIIEAFELVVKDSFKLY-------------------------------AAINDGIINLLEKFFEMSKHDAIKALDIYKR 244 (491)
T ss_pred cHHHHHHHHHHHHHHHHH-------------------------------HHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 333344433333333333 34777777777774433 6777789999
Q ss_pred HHHHHHHHHHHhhhhhh
Q 006561 617 LKKAIQDAKIKYDELVN 633 (640)
Q Consensus 617 L~~~~Eeak~~y~~~~~ 633 (640)
+.++.|.--.-|..|+.
T Consensus 245 ~~~q~e~L~~f~~~ck~ 261 (491)
T KOG0251|consen 245 FLSQTEKLSEFLKVCKS 261 (491)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999988777777765
No 9
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=64.86 E-value=76 Score=31.66 Aligned_cols=90 Identities=18% Similarity=0.275 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHhhhhcC-CCchhhHhHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHHHhHHH
Q 006561 350 MIRREYDSKCRILRQLESKG-VSSHKIDKTRAVVKDLHSRIKVAIHRIDSISKRIEELRDKELQPQLEDLIEGLSRMWEV 428 (640)
Q Consensus 350 ~lRi~YeKKc~~Lr~qd~kG-ad~~kIDKTRa~Vk~L~TrI~VaIqsVdsiS~~I~kLRDEEL~PQL~ELI~GL~rMWk~ 428 (640)
.+...++||-..+.++...| ....+++.....|..+..|+..+-+..+.|+..|-+=.+.==.=-..++-..|..+...
T Consensus 139 ~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~~~is~~~k~E~~rf~~~k~~d~k~~l~~~~~~ 218 (236)
T PF09325_consen 139 NAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKDEFEEISENIKKELERFEKEKVKDFKSMLEEYAES 218 (236)
T ss_pred HHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677777777777774 34589999999999999999999999999998765311111111233444555555555
Q ss_pred HHHHHHHHHHH
Q 006561 429 MFECHKLQFQV 439 (640)
Q Consensus 429 MlECHq~Q~~i 439 (640)
+.++|+....+
T Consensus 219 ~i~~~~~~~~~ 229 (236)
T PF09325_consen 219 QIEYQKKMLEA 229 (236)
T ss_pred HHHHHHHHHHH
Confidence 66666555444
No 10
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=63.39 E-value=1.8e+02 Score=29.70 Aligned_cols=25 Identities=0% Similarity=0.134 Sum_probs=20.8
Q ss_pred ChHHHHHHHHHHHHHHhhHhHhhhh
Q 006561 539 PSKELTDSIKSLASETSHFLPRQEK 563 (640)
Q Consensus 539 p~k~v~~AIksFa~~v~~l~~qQe~ 563 (640)
.+..+.++++.|+..+..||..+..
T Consensus 55 gd~~i~~~L~kF~~~l~ei~~~~~~ 79 (200)
T cd07637 55 KDEMISECLDKFGDSLQEMVNYHMI 79 (200)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446889999999999999987754
No 11
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=62.91 E-value=73 Score=32.51 Aligned_cols=70 Identities=11% Similarity=0.175 Sum_probs=40.0
Q ss_pred hhHHHHHHHHHHHHHHHhhhhcC--CCchhhHhHHHHHHH-------HhhHHHHHHHHHHHHHHHhhhhhccchhhHHHH
Q 006561 347 ASEMIRREYDSKCRILRQLESKG--VSSHKIDKTRAVVKD-------LHSRIKVAIHRIDSISKRIEELRDKELQPQLED 417 (640)
Q Consensus 347 a~E~lRi~YeKKc~~Lr~qd~kG--ad~~kIDKTRa~Vk~-------L~TrI~VaIqsVdsiS~~I~kLRDEEL~PQL~E 417 (640)
+-++.|..|++.|..++.+-..+ .....++|.++-+++ ....+.++++....+-. +=++-||.+++
T Consensus 122 ~l~KaK~~Y~~~c~~~e~~~~~~~~~~~ke~eK~~~k~~k~~~~~~~~~~~Y~~~v~~~~~~~~-----~~~~~~~~~~~ 196 (236)
T cd07651 122 YLEKAREKYEADCSKINSYTLQSQLTWGKELEKNNAKLNKAQSSINSSRRDYQNAVKALRELNE-----IWNREWKAALD 196 (236)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
Confidence 55788999999998887665432 222334444444444 44556666665444322 12344566666
Q ss_pred HHHH
Q 006561 418 LIEG 421 (640)
Q Consensus 418 LI~G 421 (640)
.+|-
T Consensus 197 ~~Q~ 200 (236)
T cd07651 197 DFQD 200 (236)
T ss_pred HHHH
Confidence 6555
No 12
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=62.60 E-value=1.4e+02 Score=30.45 Aligned_cols=118 Identities=13% Similarity=0.222 Sum_probs=67.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHhhcCCCCcccccCCCCCCCCCCCCCCchHHHHHHHHHHhhccCChHHHHHHHHHHHHHHh
Q 006561 476 FTKWISAQKFYLQAINNWLVKCVSLPQKSSRRKRRVPAPPPLRNFGPPIYATCSVWLDLLDWLPSKELTDSIKSLASETS 555 (640)
Q Consensus 476 F~~wI~aQK~YV~aLngWL~~cl~~~~e~~~~~~~~~s~~P~r~~aPpIf~lC~~W~~aLdrLp~k~v~~AIksFa~~v~ 555 (640)
|..=....++|-+.|..|-++.+..... +..+.+.+...|...+..+ ..+...-..|+..+.
T Consensus 28 ~keRa~iE~eYak~L~kLa~k~~~~~~~----------------~~~~~~s~~~aw~~i~~e~--~~~a~~H~~~a~~l~ 89 (251)
T cd07653 28 VKERAAIEQEYAKKLRKLVKKYLPKKKE----------------EDEYSFSSVKAFRSILNEV--NDIAGQHELIAENLN 89 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCC----------------CccccccHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 4455677899999999999887543211 0012335677887776531 222333333333332
Q ss_pred --------hHhHhhhhhhcCCCChhhhhhhccccccccccchhhhhccHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 006561 556 --------HFLPRQEKNQGKSGSETAVNLLADDASEDWISGFDRFRSSLVGFLGQLNNFSENSVQMYADLKKAIQDAKIK 627 (640)
Q Consensus 556 --------~l~~qQe~~~~kk~~~~~~~~~~~~~~~~~~~~~~~Lq~~L~~~l~aL~~Fs~~S~k~YeeL~~~~Eeak~~ 627 (640)
.+...+++.+ |. +...+..++..+...+..|++ +.+.|+.+.+..+.|+.+
T Consensus 90 ~~v~~~l~~~~~~~~~~r--K~---------------~~~~~~kl~~~~~~~~~~l~k----skk~Y~~~~ke~~~a~~k 148 (251)
T cd07653 90 SNVCKELKTLISELRQER--KK---------------HLSEGSKLQQKLESSIKQLEK----SKKAYEKAFKEAEKAKQK 148 (251)
T ss_pred HHHHHHHHHHHHHHHHHH--HH---------------HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 2222222211 10 011234477777777777766 777888888888888888
Q ss_pred hhhhh
Q 006561 628 YDELV 632 (640)
Q Consensus 628 y~~~~ 632 (640)
|.+..
T Consensus 149 ~~~~~ 153 (251)
T cd07653 149 YEKAD 153 (251)
T ss_pred HHHhh
Confidence 87654
No 13
>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 161 (Rvs161p) and Schizosaccharomyces pombe Hob3 (homolog of Bin3). S. cerevisiae Rvs161p plays a role in regulating cell polarity, actin cytoskeleton polarization, vesicle trafficking, endocytosis, bud formation, and the mating response. It forms a heterodimer with another BAR domain protein Rvs167p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. S. pombe Hob3 is important in regulating filamentous actin localization an
Probab=62.26 E-value=1.8e+02 Score=30.07 Aligned_cols=58 Identities=12% Similarity=0.066 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCCcccccCCCCCCCCCCCCCCchHHHHHHHHHHhhccCC
Q 006561 460 QITIHLENELSSLSSSFTKWISAQKFYLQAINNWLVKCVSLPQKSSRRKRRVPAPPPLRNFGPPIYATCSVWLDLLDWLP 539 (640)
Q Consensus 460 qaT~qLE~El~~W~ssF~~wI~aQK~YV~aLngWL~~cl~~~~e~~~~~~~~~s~~P~r~~aPpIf~lC~~W~~aLdrLp 539 (640)
..+..|..++..|..++..+.++|....++|.+ .+.+.. .+....+|..|...++.|.
T Consensus 25 ~~~~kL~k~~k~y~da~~~l~~~q~~i~~~l~~------lY~p~~----------------~~~~~~~~~~y~~~v~~l~ 82 (224)
T cd07591 25 KASTKLQKEAKGYLDSLRALTSSQARIAETISS------FYGDAG----------------DKDGAMLSQEYKQAVEELD 82 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hcCCCC----------------CccHhHHHHHHHHHHHHHH
Confidence 478899999999999999999999999999986 232211 0112458888888877764
No 14
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=61.83 E-value=1.4e+02 Score=31.17 Aligned_cols=118 Identities=11% Similarity=0.169 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCCcccccCCCCCCCCCCCCCCchHHHHHHHHHHhhccCChHHH-----
Q 006561 469 LSSLSSSFTKWISAQKFYLQAINNWLVKCVSLPQKSSRRKRRVPAPPPLRNFGPPIYATCSVWLDLLDWLPSKEL----- 543 (640)
Q Consensus 469 l~~W~ssF~~wI~aQK~YV~aLngWL~~cl~~~~e~~~~~~~~~s~~P~r~~aPpIf~lC~~W~~aLdrLp~k~v----- 543 (640)
|..-...|..=+..-++|-+.|. ++|-.+....++...+.++ +|..|..-|+.+-.-.-
T Consensus 21 Le~i~~F~reRa~iE~EYA~~L~---~L~kq~~k~~~~~~~~~s~-------------~~~sW~~iL~ete~~A~~~~~~ 84 (237)
T cd07657 21 LETMKKYMAKRAKSDREYASTLG---SLANQGLKIEAGDDLQGSP-------------ISKSWKEIMDSTDQLSKLIKQH 84 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHhhCcCCCcccCCcCh-------------HHHHHHHHHHHHHHHHHHHHHH
Q ss_pred --------HHHHHHHHHHHhhHhHhhhhhhcCCCChhhhhhhccccccccccchhhhhccHHHHHHHHhhhhHHHHHHHH
Q 006561 544 --------TDSIKSLASETSHFLPRQEKNQGKSGSETAVNLLADDASEDWISGFDRFRSSLVGFLGQLNNFSENSVQMYA 615 (640)
Q Consensus 544 --------~~AIksFa~~v~~l~~qQe~~~~kk~~~~~~~~~~~~~~~~~~~~~~~Lq~~L~~~l~aL~~Fs~~S~k~Ye 615 (640)
++.|..+......+..+......+ |+..|..+...|++ +.+.|+
T Consensus 85 ae~l~~~i~~~l~~l~~~~~~~rK~~~~~~~k------------------------l~~el~~~~~el~k----~Kk~Y~ 136 (237)
T cd07657 85 AEALESGTLDKLTLLIKDKRKAKKAYQEERQQ------------------------IDEQYKKLTDEVEK----LKSEYQ 136 (237)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHH----HHHHHH
Q ss_pred HHHHHHHHHHHHhhh
Q 006561 616 DLKKAIQDAKIKYDE 630 (640)
Q Consensus 616 eL~~~~Eeak~~y~~ 630 (640)
.+.+.+|.|+.+|..
T Consensus 137 ~~~~e~e~Ar~k~e~ 151 (237)
T cd07657 137 KLLEDYKAAKSKFEE 151 (237)
T ss_pred HHHHHHHHHHHHHHH
No 15
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=61.82 E-value=70 Score=33.09 Aligned_cols=50 Identities=20% Similarity=0.417 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHHHHHhhhhcCCCchhhHhHHHHHHHHhhHHHHHHHHHH
Q 006561 348 SEMIRREYDSKCRILRQLESKGVSSHKIDKTRAVVKDLHSRIKVAIHRID 397 (640)
Q Consensus 348 ~E~lRi~YeKKc~~Lr~qd~kGad~~kIDKTRa~Vk~L~TrI~VaIqsVd 397 (640)
-++-|..|+..|..+.++...+.....++|+++-+++....+.-+++...
T Consensus 125 l~KaK~~Y~~~c~e~e~~~~~~~s~k~~eK~~~K~~ka~~~Y~~~v~~~~ 174 (261)
T cd07648 125 LQKAKEAYHARCLELERLRRENASPKEIEKAEAKLKKAQDEYKALVEKYN 174 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778999999999998876665455566666666555544444444433
No 16
>cd07600 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Proteomic analysis shows that Golgi vesicle protein of 36 kDa (Gvp36) may be involved in vesicular trafficking and nutritional adaptation. A Saccharomyces cerevisiae strain deficient in Gvp36 shows defects in growth, in actin cytoskeleton polarization, in endocytosis, in vacuolar biogenesis, and in the cell cycle. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=61.44 E-value=2.1e+02 Score=30.09 Aligned_cols=135 Identities=10% Similarity=0.064 Sum_probs=81.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhhcCCCCcccccCCCCCCCCCCCCCCchHHHHHHHHHHhhccCC---hHHHHHHHHH
Q 006561 473 SSSFTKWISAQKFYLQAINNWLVKCVSLPQKSSRRKRRVPAPPPLRNFGPPIYATCSVWLDLLDWLP---SKELTDSIKS 549 (640)
Q Consensus 473 ~ssF~~wI~aQK~YV~aLngWL~~cl~~~~e~~~~~~~~~s~~P~r~~aPpIf~lC~~W~~aLdrLp---~k~v~~AIks 549 (640)
..+|..|=+. |..--+||..-..+.+-......++.+..+++...-.|-..+.+=...|..++ +.....|+..
T Consensus 36 ~es~~~~~~~----~~~k~~~l~~~t~~~e~~~~l~~~~~~~~~pkTl~~aLs~~m~~~~~~l~~~~~~~~s~lg~aL~~ 111 (242)
T cd07600 36 TESISDFSKT----IGSKVSELSKATSPTEAQKVLLGTPAPAKLPKTLNHALSRAALASSLELKSLEPEDEDPLSKALGK 111 (242)
T ss_pred hHHHHHHHHh----hHHHHHHHhhcCChhhhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHHhCccCCCCCCHHHHHHHH
Confidence 3455555444 66667888876655432221111111212334444444444445555555544 5677778888
Q ss_pred HHHHHhhHhHhhhhhhcCCCChhhhhhhccccccccccchhhhhccHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 006561 550 LASETSHFLPRQEKNQGKSGSETAVNLLADDASEDWISGFDRFRSSLVGFLGQLNNFSENSVQMYADLKKAIQDAKIKYD 629 (640)
Q Consensus 550 Fa~~v~~l~~qQe~~~~kk~~~~~~~~~~~~~~~~~~~~~~~Lq~~L~~~l~aL~~Fs~~S~k~YeeL~~~~Eeak~~y~ 629 (640)
+...-..|-.-+... -+.--+.++..|..|-...++.+...|+++|..|-.|-
T Consensus 112 ~g~a~~kIa~ar~~~---------------------------D~~I~~~Fl~pL~~~L~~d~k~i~k~RKkle~~RLd~D 164 (242)
T cd07600 112 YSDAEEKIAEARLEQ---------------------------DQLIQKEFNAKLRETLNTSFQKAHKARKKVEDKRLQLD 164 (242)
T ss_pred HHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877777765422111 01112678888899988899999999999999999998
Q ss_pred hhhhhhhhc
Q 006561 630 ELVNREAKS 638 (640)
Q Consensus 630 ~~~~~~~~~ 638 (640)
-++.+.+|.
T Consensus 165 ~~K~~~~ka 173 (242)
T cd07600 165 TARAELKSA 173 (242)
T ss_pred HHHHHHHhc
Confidence 888876543
No 17
>cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase (GRAF), also called Rho GTPase activating protein 26 (ARHGAP26), is a GAP with activity towards RhoA and Cdc42 and is only weakly active towards Rac1. It influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase (FAK), which is a critical component of integrin signaling. GRAF contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of GRAF directly interacts with its Rho GAP domain and inhibits its activity. Autoinhibited GRAF is capable o
Probab=60.57 E-value=2.1e+02 Score=29.59 Aligned_cols=42 Identities=17% Similarity=0.327 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcCC
Q 006561 459 RQITIHLENELSSLSSSFTKWISAQKFYLQAINNWLVKCVSL 500 (640)
Q Consensus 459 rqaT~qLE~El~~W~ssF~~wI~aQK~YV~aLngWL~~cl~~ 500 (640)
.+....|.........+...+..+||.|+.+|+..=.-|+..
T Consensus 15 ~k~ik~liK~~k~~i~A~k~~~~a~~~Fa~sL~~f~~~~~gd 56 (207)
T cd07636 15 NKFIKELIKDGKSLIAALKNLSSAKRKFADSLNEFKFQCIGD 56 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 356677788888888889999999999999999998888744
No 18
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=58.15 E-value=2.5e+02 Score=29.70 Aligned_cols=120 Identities=18% Similarity=0.324 Sum_probs=81.3
Q ss_pred HHHHHHHHHHhhhhc-CCCchhhHhHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHHHhHHHHHHH
Q 006561 354 EYDSKCRILRQLESK-GVSSHKIDKTRAVVKDLHSRIKVAIHRIDSISKRIEELRDKELQPQLEDLIEGLSRMWEVMFEC 432 (640)
Q Consensus 354 ~YeKKc~~Lr~qd~k-Gad~~kIDKTRa~Vk~L~TrI~VaIqsVdsiS~~I~kLRDEEL~PQL~ELI~GL~rMWk~MlEC 432 (640)
.-.++.+..++.-.+ |-.-....+.|..++.|...+. .|+.|-.+-.+|+.|=.+.=||.=++||...-.++..+
T Consensus 85 ~~R~~L~~~~~~~~~~~L~Il~~~rkr~~l~~ll~~L~-~i~~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~l--- 160 (291)
T PF10475_consen 85 NLRRNLKSADENLTKSGLEILRLQRKRQNLKKLLEKLE-QIKTVQQTQSRLQELLEEGDYPGALDLIEECQQLLEEL--- 160 (291)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc---
Confidence 334445555544333 5566666777777878877766 78888888999999999999999999999988887543
Q ss_pred HHHHHHHHHHHhccCCCcccCCChhHHHHHHHHHHHHHHHHHHHHH--HHHHhHHH
Q 006561 433 HKLQFQVISVAYNNAHSKISIKSDSHRQITIHLENELSSLSSSFTK--WISAQKFY 486 (640)
Q Consensus 433 Hq~Q~~ii~~a~~~~~~~~~~tse~hrqaT~qLE~El~~W~ssF~~--wI~aQK~Y 486 (640)
.+++.++.+... -.+.......+|+.+|..-+..|.. +-+-|-+|
T Consensus 161 --~~~~c~~~L~~~-------L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY 207 (291)
T PF10475_consen 161 --KGYSCVRHLSSQ-------LQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAY 207 (291)
T ss_pred --ccchHHHHHhHH-------HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 344445433110 1234456677888888888887753 55555555
No 19
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=57.88 E-value=2.7e+02 Score=30.01 Aligned_cols=102 Identities=18% Similarity=0.145 Sum_probs=67.3
Q ss_pred HHHHhhhhcCCCchhhHhHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 006561 360 RILRQLESKGVSSHKIDKTRAVVKDLHSRIKVAIHRIDSISKRIEELRDKELQPQLEDLIEGLSRMWEVMFECHKLQFQV 439 (640)
Q Consensus 360 ~~Lr~qd~kGad~~kIDKTRa~Vk~L~TrI~VaIqsVdsiS~~I~kLRDEEL~PQL~ELI~GL~rMWk~MlECHq~Q~~i 439 (640)
.++.++..++-+..+|-.-+..+..++..+.|+--.+..+..+ .|=.++.-+|..|.||=++|..+
T Consensus 152 d~I~kLk~k~P~s~kl~~LeqELvraEae~lvaEAqL~n~kR~--------------~lKEa~~~~f~Al~E~aEK~~Il 217 (271)
T PF13805_consen 152 DEIAKLKYKDPQSPKLVVLEQELVRAEAENLVAEAQLSNIKRQ--------------KLKEAYSLKFDALIERAEKQAIL 217 (271)
T ss_dssp HHHHHHHHH-TTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHHhhHHHHHHHHhhHH--------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777778888888888888888888888887666666554 56689999999999999999998
Q ss_pred HHHHh----ccCCCcccC---C-----ChhHHHHHHHHHHHHHHHHHH
Q 006561 440 ISVAY----NNAHSKISI---K-----SDSHRQITIHLENELSSLSSS 475 (640)
Q Consensus 440 i~~a~----~~~~~~~~~---t-----se~hrqaT~qLE~El~~W~ss 475 (640)
..-.+ .++...+.| . .+.-+++....|..|..|...
T Consensus 218 a~~gk~Ll~lldd~pv~PG~~r~~Y~g~~~t~qIl~dAe~~L~~w~~~ 265 (271)
T PF13805_consen 218 AEYGKRLLELLDDTPVVPGDTRPPYDGYEQTRQILNDAERALRSWQPD 265 (271)
T ss_dssp HHHHHHHHTTS------TTS-------HHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHhccCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhCccC
Confidence 77432 222222211 1 122346667777888888643
No 20
>cd07686 F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fer (Fes related) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fer (Fes related) is a cytoplasmic (or nonreceptor) tyrosine kinase expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membran
Probab=52.88 E-value=3e+02 Score=28.95 Aligned_cols=51 Identities=29% Similarity=0.385 Sum_probs=38.2
Q ss_pred hHhHHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHhhhhcCCCchhhHhHH
Q 006561 327 HASTLDRLYAWERKLYDEVKAS----EMIRREYDSKCRILRQLESKGVSSHKIDKTR 379 (640)
Q Consensus 327 HSSTLdKLYAWEKKLYdEVKa~----E~lRi~YeKKc~~Lr~qd~kGad~~kIDKTR 379 (640)
| -.|.||-.||-+|-+-|+.- -++-.+|-++...|-+++.++.... ++-+.
T Consensus 7 ~-e~l~k~q~~ei~lLE~i~~f~~eRakiEkEYA~~L~~L~kq~~kk~~~~-~~~~s 61 (234)
T cd07686 7 H-EALLKLQDWELRLLETVKKFMALRVKSDKEYASTLQNLCNQVDKESTSQ-LDYVS 61 (234)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccc-ccchh
Confidence 5 78999999999999998843 3455689999999999876665433 34443
No 21
>COG5085 Predicted membrane protein [Function unknown]
Probab=52.35 E-value=17 Score=37.58 Aligned_cols=39 Identities=15% Similarity=0.248 Sum_probs=25.9
Q ss_pred CchHHHHHHHHHHhhccCChHHH---HHHHHHHHHHHhhHhH
Q 006561 521 GPPIYATCSVWLDLLDWLPSKEL---TDSIKSLASETSHFLP 559 (640)
Q Consensus 521 aPpIf~lC~~W~~aLdrLp~k~v---~~AIksFa~~v~~l~~ 559 (640)
-|.|+.+|+.|.+.|++..--.| .=+-+-|+.+|..++.
T Consensus 146 vPAi~E~C~kwkqcm~~~~~~~vg~tkl~A~vFgdvIdaFi~ 187 (230)
T COG5085 146 VPAIEELCSKWKQCMKNNGYRSVGYTKLIAEVFGDVIDAFIR 187 (230)
T ss_pred CccHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHh
Confidence 49999999999999999322111 2234556666666653
No 22
>KOG4503 consensus Uncharacterized conserved membrane protein [Function unknown]
Probab=52.35 E-value=17 Score=37.58 Aligned_cols=39 Identities=15% Similarity=0.248 Sum_probs=25.9
Q ss_pred CchHHHHHHHHHHhhccCChHHH---HHHHHHHHHHHhhHhH
Q 006561 521 GPPIYATCSVWLDLLDWLPSKEL---TDSIKSLASETSHFLP 559 (640)
Q Consensus 521 aPpIf~lC~~W~~aLdrLp~k~v---~~AIksFa~~v~~l~~ 559 (640)
-|.|+.+|+.|.+.|++..--.| .=+-+-|+.+|..++.
T Consensus 146 vPAi~E~C~kwkqcm~~~~~~~vg~tkl~A~vFgdvIdaFi~ 187 (230)
T KOG4503|consen 146 VPAIEELCSKWKQCMKNNGYRSVGYTKLIAEVFGDVIDAFIR 187 (230)
T ss_pred CccHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHh
Confidence 49999999999999999322111 2234556666666653
No 23
>cd07659 BAR_PICK1 The Bin/Amphiphysin/Rvs (BAR) domain of Protein Interacting with C Kinase 1. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Protein Interacting with C Kinase 1 (PICK1), also called Protein kinase C-alpha-binding protein, is highly expressed in brain and testes. PICK1 plays a key role in the trafficking of AMPA receptors, which are critical for regulating synaptic strength and may be important in cellular processes involved in learning and memory. PICK1 is also critical in the early stages of spermiogenesis. Mice deficient in PICK1 are infertile and show characteristics of the human disease globozoospermia such as round-headed sperm, reduced sperm count, and severely impaired sperm motility. PICK1 may also be involved in the neuropathogenesis of schizophrenia. PICK1 contains an N-terminal PDZ domain and a C-terminal BAR domain. BAR domains form dimers th
Probab=51.31 E-value=2.1e+02 Score=29.91 Aligned_cols=105 Identities=21% Similarity=0.288 Sum_probs=83.7
Q ss_pred HHHHHHhhhhhccc-hhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCC---cc--cCCChhHHHHH---HHHHH
Q 006561 397 DSISKRIEELRDKE-LQPQLEDLIEGLSRMWEVMFECHKLQFQVISVAYNNAHS---KI--SIKSDSHRQIT---IHLEN 467 (640)
Q Consensus 397 dsiS~~I~kLRDEE-L~PQL~ELI~GL~rMWk~MlECHq~Q~~ii~~a~~~~~~---~~--~~tse~hrqaT---~qLE~ 467 (640)
|..-++|+.|||.+ .|-+|+++...|++=...|..||+.=-.+...+...... .. ...+|.||... ..|-.
T Consensus 2 d~l~~qie~L~~t~~~Y~~l~~~~~~l~~~f~~l~qtqk~~Gd~Fa~l~~re~~p~l~eeF~~~ae~hR~l~k~G~~ll~ 81 (215)
T cd07659 2 DGLVKKLEELEQTAELYKGLVEHTKRLLRAFYALSQTHKEFGDLFANIGVREPQPAASEAFTKFGEAHRSIEKFGIELLK 81 (215)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHhHHHHHHHHHhHHHHHH
Confidence 45678999999965 689999999999999999999999888887766432111 11 24588999654 67888
Q ss_pred HHHHHHHHHHHHHH--------HhHHHHHHHHHHHHhhcCCC
Q 006561 468 ELSSLSSSFTKWIS--------AQKFYLQAINNWLVKCVSLP 501 (640)
Q Consensus 468 El~~W~ssF~~wI~--------aQK~YV~aLngWL~~cl~~~ 501 (640)
.+.-+.+++.-+++ ..|.|..|=..+|.-|+.-+
T Consensus 82 ai~~~~s~l~T~l~KaipDT~lTikkY~~ar~EY~ayc~kvk 123 (215)
T cd07659 82 TLKPMLSDLGTYLNKAIPDTKLTIKKYADVKFEYLSYCLKVK 123 (215)
T ss_pred HhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999998876 68999999999999998764
No 24
>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1
Probab=49.35 E-value=3.2e+02 Score=28.27 Aligned_cols=70 Identities=19% Similarity=0.297 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCCcccccCCCCCCCCCCCCCCchHHHHHHHHHHhhccCC
Q 006561 460 QITIHLENELSSLSSSFTKWISAQKFYLQAINNWLVKCVSLPQKSSRRKRRVPAPPPLRNFGPPIYATCSVWLDLLDWLP 539 (640)
Q Consensus 460 qaT~qLE~El~~W~ssF~~wI~aQK~YV~aLngWL~~cl~~~~e~~~~~~~~~s~~P~r~~aPpIf~lC~~W~~aLdrLp 539 (640)
+....|-........+...+.++||.|+.+|+..=.-|+-... +. .
T Consensus 16 ~~ikkLiK~ck~~i~a~k~~~~a~~~F~~~L~~f~~~~~g~~~--tD--------------------------------D 61 (207)
T cd07602 16 KAIKELIKECKNLISATKNLSKAQRSFAQTLQNFKFECIGETQ--TD--------------------------------D 61 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcC--cc--------------------------------c
Confidence 4566777788888888999999999999999999888874321 10 1
Q ss_pred hHHHHHHHHHHHHHHhhHhHhhhh
Q 006561 540 SKELTDSIKSLASETSHFLPRQEK 563 (640)
Q Consensus 540 ~k~v~~AIksFa~~v~~l~~qQe~ 563 (640)
+..+.++++.|+..|..|-..+..
T Consensus 62 e~~i~~~L~kF~~~l~ei~~~r~~ 85 (207)
T cd07602 62 EIEIAESLKEFGRLIETVEDERDR 85 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122558889999988888766543
No 25
>smart00872 Alpha-mann_mid Alpha mannosidase, middle domain. Members of this entry belong to the glycosyl hydrolase family 38, This domain, which is found in the central region adopts a structure consisting of three alpha helices, in an immunoglobulin/albumin-binding domain-like fold. The domain is predominantly found in the enzyme alpha-mannosidase PUBMED:12634058.
Probab=45.90 E-value=65 Score=27.49 Aligned_cols=52 Identities=17% Similarity=0.317 Sum_probs=37.0
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHHHhHHHHHHHH
Q 006561 377 KTRAVVKDLHSRIKVAIHRIDSISKRIEELRDKELQPQLEDLIEGLSRMWEVMFECH 433 (640)
Q Consensus 377 KTRa~Vk~L~TrI~VaIqsVdsiS~~I~kLRDEEL~PQL~ELI~GL~rMWk~MlECH 433 (640)
.||..+|.+.-++-..++.++....-+..+-...-||+ .-|..+||.|+.+|
T Consensus 7 Tsr~~~K~~~r~~E~~L~~~e~~~~~~~~~~~~~~~~~-----~~l~~~wk~ll~~q 58 (79)
T smart00872 7 TSRPYLKRLNRRLESLLRAAEELAALAALLLLGYKYPS-----EQLEELWKALLLNQ 58 (79)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcH-----HHHHHHHHHHHHhc
Confidence 47888888888888888888887766544322233564 34778999998764
No 26
>cd07659 BAR_PICK1 The Bin/Amphiphysin/Rvs (BAR) domain of Protein Interacting with C Kinase 1. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Protein Interacting with C Kinase 1 (PICK1), also called Protein kinase C-alpha-binding protein, is highly expressed in brain and testes. PICK1 plays a key role in the trafficking of AMPA receptors, which are critical for regulating synaptic strength and may be important in cellular processes involved in learning and memory. PICK1 is also critical in the early stages of spermiogenesis. Mice deficient in PICK1 are infertile and show characteristics of the human disease globozoospermia such as round-headed sperm, reduced sperm count, and severely impaired sperm motility. PICK1 may also be involved in the neuropathogenesis of schizophrenia. PICK1 contains an N-terminal PDZ domain and a C-terminal BAR domain. BAR domains form dimers th
Probab=45.62 E-value=1.4e+02 Score=31.15 Aligned_cols=65 Identities=17% Similarity=0.256 Sum_probs=49.8
Q ss_pred HHhhHHHHHHHHHHHHHHHhhhhcCCCchhhHhHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhcc
Q 006561 345 VKASEMIRREYDSKCRILRQLESKGVSSHKIDKTRAVVKDLHSRIKVAIHRIDSISKRIEELRDK 409 (640)
Q Consensus 345 VKa~E~lRi~YeKKc~~Lr~qd~kGad~~kIDKTRa~Vk~L~TrI~VaIqsVdsiS~~I~kLRDE 409 (640)
||.-+..|++|+--|-.|+.++....+...+|.+-.-|+.-.-..+.-.+.-..--.+-.|||.+
T Consensus 105 ikkY~~ar~EY~ayc~kvkEmd~ee~~~~~~~e~l~rvetgnyeyrl~lRcrq~~r~kf~kLR~D 169 (215)
T cd07659 105 IKKYADVKFEYLSYCLKVKEMDDEEYSYAALDEPLYRVETGNYEYRLILRCRQEARARFAKLRQD 169 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccCcHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778899999999999999998888877777777777766666666666666666667777764
No 27
>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Formin Binding Protein 17 (FBP17), also called FormiN Binding Protein 1 (FNBP1), is involved in dynamin-mediated endocytosis. It is recruited to clathrin-coated pits late in the endocytosis process and may play a role in the invagination and scission steps. FBP17 binds in vivo to tankyrase, a protein involved in telomere maintenance and mitogen activated protein kinase (MAPK) signaling. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=43.19 E-value=3.9e+02 Score=28.15 Aligned_cols=120 Identities=10% Similarity=0.145 Sum_probs=68.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHhhcCCCCcccccCCCCCCCCCCCCCCchHHHHHHHHHHhhccCChHHHHHHHHHHHHHHh
Q 006561 476 FTKWISAQKFYLQAINNWLVKCVSLPQKSSRRKRRVPAPPPLRNFGPPIYATCSVWLDLLDWLPSKELTDSIKSLASETS 555 (640)
Q Consensus 476 F~~wI~aQK~YV~aLngWL~~cl~~~~e~~~~~~~~~s~~P~r~~aPpIf~lC~~W~~aLdrLp~k~v~~AIksFa~~v~ 555 (640)
|..=..--++|-+.|..|-++...-.... + ...|.|..|..|...|..+- .+.+.=..|+..+.
T Consensus 28 ~kERa~IEkeYakkL~~L~kKy~~kk~~~--------~------~~~~~~t~~~aw~~~l~e~~--~~A~~H~~~~~~L~ 91 (253)
T cd07676 28 VKERTEIELSYAKQLRNLSKKYQPKKNSK--------E------EEEYKYTSCRAFLMTLNEMN--DYAGQHEVISENLA 91 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccc--------c------cccccchHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 34444567999999999999875432110 0 11245678999997665432 22222233333332
Q ss_pred h--------HhHhhhhhhcCCCChhhhhhhccccccccccchhhhhccHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 006561 556 H--------FLPRQEKNQGKSGSETAVNLLADDASEDWISGFDRFRSSLVGFLGQLNNFSENSVQMYADLKKAIQDAKIK 627 (640)
Q Consensus 556 ~--------l~~qQe~~~~kk~~~~~~~~~~~~~~~~~~~~~~~Lq~~L~~~l~aL~~Fs~~S~k~YeeL~~~~Eeak~~ 627 (640)
. +..+.+..|.. +......++.-+...+..|++ +-+.|+...+..|.|+..
T Consensus 92 ~~v~~~l~~~~~~~k~~rK~-----------------~~~~~~k~qk~~~~~~~~lek----aKk~Y~~acke~E~A~~~ 150 (253)
T cd07676 92 SQIIVELTRYVQELKQERKS-----------------HFHDGRKAQQHIETCWKQLES----SKRRFERDCKEADRAQQY 150 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 2 22111111100 001123467777777777776 677899999999998888
Q ss_pred hhhhh
Q 006561 628 YDELV 632 (640)
Q Consensus 628 y~~~~ 632 (640)
|.+..
T Consensus 151 ~~ka~ 155 (253)
T cd07676 151 FEKMD 155 (253)
T ss_pred HHhcc
Confidence 86654
No 28
>cd07618 BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 1 (Rich1) is also called Neuron-associated developmentally-regulated protein (Nadrin) or Rho GTPase activating protein 17 (ARHGAP17). It is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. It may be a component of a sorting mechanism in the recycling of tight junction transmembrane proteins. Rich1 contains an N-terminal BAR domain followed by a Rho GAP domain and a C-terminal proline-rich domain. It interacts with the BAR domain proteins endophilin and amphiphysin through its proline-rich region. The BAR domain of Rich1 forms oligomers and can bind membranes and induce membrane tubulation.
Probab=43.17 E-value=4.3e+02 Score=28.01 Aligned_cols=24 Identities=29% Similarity=0.538 Sum_probs=13.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 006561 456 DSHRQITIHLENELSSLSSSFTKW 479 (640)
Q Consensus 456 e~hrqaT~qLE~El~~W~ssF~~w 479 (640)
++|++|+.-|+.-+-.--.....|
T Consensus 210 eYHr~a~e~Le~~~p~i~~~~~~~ 233 (246)
T cd07618 210 DYHRKALAVIEKVLPEIQAHQDKW 233 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456666666655555544444444
No 29
>PRK11546 zraP zinc resistance protein; Provisional
Probab=42.66 E-value=66 Score=31.48 Aligned_cols=50 Identities=22% Similarity=0.331 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCchhhHhHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhc
Q 006561 350 MIRREYDSKCRILRQLESKGVSSHKIDKTRAVVKDLHSRIKVAIHRIDSISKRIEELRD 408 (640)
Q Consensus 350 ~lRi~YeKKc~~Lr~qd~kGad~~kIDKTRa~Vk~L~TrI~VaIqsVdsiS~~I~kLRD 408 (640)
+|+-+|..+...||.+ +-.-|+.++.|.+.=...-+.|.+.+++|..||+
T Consensus 54 ~I~~~f~~~t~~LRqq---------L~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~ 103 (143)
T PRK11546 54 KIHNDFYAQTSALRQQ---------LVSKRYEYNALLTANPPDSSKINAVAKEMENLRQ 103 (143)
T ss_pred HHHHHHHHHHHHHHHH---------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 3444455555555532 3333444444444444445555555555555554
No 30
>PF12408 DUF3666: Ribose-5-phosphate isomerase ; InterPro: IPR022133 This domain family is found in bacteria, and is approximately 50 amino acids in length. The family is found in association with PF02502 from PFAM. There are two completely conserved residues (D and F) that may be functionally important. ; PDB: 3ONO_A 3C5Y_N 2PPW_A.
Probab=38.39 E-value=22 Score=28.81 Aligned_cols=28 Identities=25% Similarity=0.376 Sum_probs=20.2
Q ss_pred CCcHHHHHHHHHHHHHHHhccCCccchh
Q 006561 207 SKDFFSSMKDIELLFIKASDSGKEVPRM 234 (640)
Q Consensus 207 ~kdL~evvKEIe~~F~kAseSG~EVS~m 234 (640)
.|||++++|+||-.|+|.+=+|......
T Consensus 4 ~k~ll~iLk~iDqdLvK~AisGe~Fqe~ 31 (48)
T PF12408_consen 4 YKDLLDILKAIDQDLVKTAISGERFQEC 31 (48)
T ss_dssp S--HHHHHHHS-HHHHHHHT-SHHHHHH
T ss_pred hhhHHHHHHHhCHHHHHHHhccHHHHHH
Confidence 4699999999999999999999755443
No 31
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=37.62 E-value=4.6e+02 Score=26.71 Aligned_cols=64 Identities=6% Similarity=0.064 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCCcccccCCCCCCCCCCCCCCchHHHHHHHHHHhhccCC
Q 006561 460 QITIHLENELSSLSSSFTKWISAQKFYLQAINNWLVKCVSLPQKSSRRKRRVPAPPPLRNFGPPIYATCSVWLDLLDWLP 539 (640)
Q Consensus 460 qaT~qLE~El~~W~ssF~~wI~aQK~YV~aLngWL~~cl~~~~e~~~~~~~~~s~~P~r~~aPpIf~lC~~W~~aLdrLp 539 (640)
+....|-......+.+...++.+|+.|+.+|+.-=.-| ..
T Consensus 16 ~~l~kl~K~~~~~~~ag~~~~~a~~~F~~~L~~~~~~~----------------------------------------~~ 55 (200)
T cd07603 16 TRLEKLLKLCNGMVDSGKTYVNANSLFVNSLNDLSDYF----------------------------------------RD 55 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----------------------------------------CC
Confidence 34455556666667777788888888888888432221 12
Q ss_pred hHHHHHHHHHHHHHHhhHhHhhhh
Q 006561 540 SKELTDSIKSLASETSHFLPRQEK 563 (640)
Q Consensus 540 ~k~v~~AIksFa~~v~~l~~qQe~ 563 (640)
|..+..+++.|+..+..||.-+..
T Consensus 56 d~~i~~~l~kF~~~l~el~~~~~~ 79 (200)
T cd07603 56 DSLVQNCLNKFIQALQEMNNFHTI 79 (200)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 235679999999999999977643
No 32
>smart00509 TFS2N Domain in the N-terminus of transcription elongation factor S-II (and elsewhere).
Probab=35.91 E-value=97 Score=26.69 Aligned_cols=55 Identities=16% Similarity=0.488 Sum_probs=43.5
Q ss_pred hHhHHHHHHHHhhHHHHHHHHHHH--HHHHhhhhhccchhhHHHHHHHHHHHhHHHHHH
Q 006561 375 IDKTRAVVKDLHSRIKVAIHRIDS--ISKRIEELRDKELQPQLEDLIEGLSRMWEVMFE 431 (640)
Q Consensus 375 IDKTRa~Vk~L~TrI~VaIqsVds--iS~~I~kLRDEEL~PQL~ELI~GL~rMWk~MlE 431 (640)
.+..-..++.|.. +.++.+.+.+ |-+.+++||.-. -|++-.|...|.+=||.+.+
T Consensus 18 ~~~~l~~L~~L~~-~~~t~~~L~~T~iG~~v~~Lrkh~-~~~I~~~A~~Li~~WK~~v~ 74 (75)
T smart00509 18 VSRCLDILKKLKK-LPITVDLLEETRIGKKVNGLRKHK-NEEIRKLAKKLIKSWKKLVY 74 (75)
T ss_pred HHHHHHHHHHHhc-CCCCHHHHHHCcHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHHhc
Confidence 4556667777775 6667666665 668999999875 69999999999999998753
No 33
>PF02970 TBCA: Tubulin binding cofactor A; InterPro: IPR004226 The folding pathway of tubulins includes highly specific interactions with a series of cofactors (A, B, C, D and E) after they are released from the eukaryotic chaperonin CCT. Cofactors A and D capture and stabilise tubulin in a quasi-native conformation. Cofactor E binds to the cofactor D-tubulin complex, and interaction with cofactor C then causes the release of tubulin poypeptides in the native state. This family is the tubulin-specific chaperone A.; GO: 0051082 unfolded protein binding, 0007021 tubulin complex assembly, 0005874 microtubule; PDB: 3MXZ_A 1QSD_A 1H7C_A.
Probab=35.83 E-value=2.6e+02 Score=25.00 Aligned_cols=53 Identities=15% Similarity=0.375 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHhhhhcCCCchh-------hHhHHHHHHHHhhHHHHHHHHHHHHHHHhh
Q 006561 352 RREYDSKCRILRQLESKGVSSHK-------IDKTRAVVKDLHSRIKVAIHRIDSISKRIE 404 (640)
Q Consensus 352 Ri~YeKKc~~Lr~qd~kGad~~k-------IDKTRa~Vk~L~TrI~VaIqsVdsiS~~I~ 404 (640)
..+.+.-..+|.++...|.|... ++.|++.|-+...||.-++..+..+-..-+
T Consensus 20 ~kE~~~q~~rle~~k~~~~de~~iKkq~~vl~Et~~mipd~~~RL~~a~~~L~~~l~~~~ 79 (90)
T PF02970_consen 20 EKEVEEQEARLEKMKAEGEDEYDIKKQEEVLEETKMMIPDCQQRLEKAVEDLEEFLEEEE 79 (90)
T ss_dssp HHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHCc
Confidence 34455555556666666777654 477889999999999999888877644333
No 34
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=35.56 E-value=36 Score=30.76 Aligned_cols=36 Identities=22% Similarity=0.287 Sum_probs=26.4
Q ss_pred cHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 006561 595 SLVGFLGQLNNFSENSVQMYADLKKAIQDAKIKYDEL 631 (640)
Q Consensus 595 ~L~~~l~aL~~Fs~~S~k~YeeL~~~~Eeak~~y~~~ 631 (640)
+|-.+.-.+-.|.. .-++|+||+++|++||..+++-
T Consensus 52 sl~~lgy~v~tFnD-cpeA~~eL~~eI~eAK~dLr~k 87 (91)
T PF08285_consen 52 SLFTLGYGVATFND-CPEAAKELQKEIKEAKADLRKK 87 (91)
T ss_pred HHHHHHHhhhccCC-CHHHHHHHHHHHHHHHHHHHHc
Confidence 34555555666643 4569999999999999988764
No 35
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=34.74 E-value=4e+02 Score=27.02 Aligned_cols=74 Identities=16% Similarity=0.249 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHhhhhcCC-CchhhHhHHHHHHHHhhHHHHHHHHHHHHHHHhhh-------hhccchhhHHHHHHH
Q 006561 349 EMIRREYDSKCRILRQLESKGV-SSHKIDKTRAVVKDLHSRIKVAIHRIDSISKRIEE-------LRDKELQPQLEDLIE 420 (640)
Q Consensus 349 E~lRi~YeKKc~~Lr~qd~kGa-d~~kIDKTRa~Vk~L~TrI~VaIqsVdsiS~~I~k-------LRDEEL~PQL~ELI~ 420 (640)
+.+...++||-.+|-++...|. -..||+.....|+.++.+...+-+..+.||..|.+ -|=.++--.|..+++
T Consensus 118 ~~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~~a~~~~e~is~~~k~El~rF~~~r~~dfk~~l~~~~e 197 (216)
T cd07627 118 QSAESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERRASELKKEFEEVSELIKSELERFERERVEDFRNSVEIYLE 197 (216)
T ss_pred HHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777765442 36799999999999999999999999999988753 333444444554444
Q ss_pred HH
Q 006561 421 GL 422 (640)
Q Consensus 421 GL 422 (640)
|+
T Consensus 198 ~~ 199 (216)
T cd07627 198 SA 199 (216)
T ss_pred HH
Confidence 43
No 36
>cd07678 F-BAR_FCHSD1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains 1 (FCHSD1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH and double SH3 domains 1 (FCHSD1) contains an N-terminal F-BAR domain and two SH3 domains at the C-terminus. It has been characterized only in silico, and its biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=34.54 E-value=68 Score=34.19 Aligned_cols=36 Identities=22% Similarity=0.350 Sum_probs=31.7
Q ss_pred hhhhccHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 006561 590 DRFRSSLVGFLGQLNNFSENSVQMYADLKKAIQDAKIKYD 629 (640)
Q Consensus 590 ~~Lq~~L~~~l~aL~~Fs~~S~k~YeeL~~~~Eeak~~y~ 629 (640)
..+|..|.+.+..|.+ +.+.|+.+.+.++.|+.+|.
T Consensus 119 ~~lQ~eL~~~~keL~k----sKK~Y~~~~~ea~~A~~K~~ 154 (263)
T cd07678 119 QKAQAELLETVKELSK----SKKLYGQLERVSEVAKEKAA 154 (263)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 3488999999988887 78899999999999999997
No 37
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=33.88 E-value=5.3e+02 Score=26.96 Aligned_cols=52 Identities=17% Similarity=0.272 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHHHHHhhhhcCCCchhhHhHHHHHHHHhhHHHHHHHHHHHHHHHhhhh
Q 006561 348 SEMIRREYDSKCRILRQLESKGVSSHKIDKTRAVVKDLHSRIKVAIHRIDSISKRIEEL 406 (640)
Q Consensus 348 ~E~lRi~YeKKc~~Lr~qd~kGad~~kIDKTRa~Vk~L~TrI~VaIqsVdsiS~~I~kL 406 (640)
-++-|..|++.|+...+.-.-| .++..|+++..|..-|-+.+......-++.
T Consensus 125 l~kaK~~Y~~~cke~e~a~~~~-------~s~k~leK~~~K~~ka~~~y~~~~~ky~~~ 176 (261)
T cd07674 125 LQKSRENYHSKCVEQERLRREG-------VPQKELEKAELKTKKAAESLRGSVEKYNRA 176 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466999999999886654333 345555555566555555544444444444
No 38
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=33.49 E-value=5.6e+02 Score=27.29 Aligned_cols=38 Identities=18% Similarity=0.218 Sum_probs=29.4
Q ss_pred hhhccHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 006561 591 RFRSSLVGFLGQLNNFSENSVQMYADLKKAIQDAKIKYDELV 632 (640)
Q Consensus 591 ~Lq~~L~~~l~aL~~Fs~~S~k~YeeL~~~~Eeak~~y~~~~ 632 (640)
.+|..|...+..|++ |-+.|+...+..|.|+.+|.+..
T Consensus 117 klqk~l~~~~~~lek----sKk~Y~~acke~E~A~~k~~ka~ 154 (252)
T cd07675 117 KAQQYLDMCWKQMDN----SKKKFERECREAEKAQQSYERLD 154 (252)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcc
Confidence 366777777777766 77889999999999888887744
No 39
>cd07633 BAR_OPHN1 The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin-1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Oligophrenin-1 (OPHN1) is a GTPase activating protein (GAP) with activity towards RhoA, Rac, and Cdc42, that is expressed in developing spinal cord and in adult brain areas with high plasticity. It plays a role in regulating the actin cystoskeleton as well as morphology changes in axons and dendrites, and may also function in modulating neuronal connectivity. Mutations in the OPHN1 gene causes X-linked mental retardation associated with cerebellar hypoplasia, lateral ventricle enlargement and epilepsy. OPHN1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=33.33 E-value=5.8e+02 Score=26.62 Aligned_cols=69 Identities=12% Similarity=0.144 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCCcccccCCCCCCCCCCCCCCchHHHHHHHHHHhhccCCh
Q 006561 461 ITIHLENELSSLSSSFTKWISAQKFYLQAINNWLVKCVSLPQKSSRRKRRVPAPPPLRNFGPPIYATCSVWLDLLDWLPS 540 (640)
Q Consensus 461 aT~qLE~El~~W~ssF~~wI~aQK~YV~aLngWL~~cl~~~~e~~~~~~~~~s~~P~r~~aPpIf~lC~~W~~aLdrLp~ 540 (640)
....|..+......+...+..+||.|+..|+..=..|+.... |. .+
T Consensus 17 ~IkkliK~~~~li~a~K~~s~A~r~Fa~~L~df~f~~igd~~--td--------------------------------de 62 (207)
T cd07633 17 FIKDVIKDGNALISAIKEYSSAVQKFSQTLQSFQFDFIGDTL--TD--------------------------------DE 62 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc--cc--------------------------------hH
Confidence 455677777778888999999999999999999888874321 11 23
Q ss_pred HHHHHHHHHHHHHHhhHhHhhhh
Q 006561 541 KELTDSIKSLASETSHFLPRQEK 563 (640)
Q Consensus 541 k~v~~AIksFa~~v~~l~~qQe~ 563 (640)
..+.++++.|+..+..|...+..
T Consensus 63 ~~I~~sL~~F~~~L~~ie~~r~~ 85 (207)
T cd07633 63 INIAESFKEFAELLQEVEEERMM 85 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34668899999998888776643
No 40
>cd07634 BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domain of Rho GTPase activating protein 10-like. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This group is composed of uncharacterized proteins called Rho GTPase activating protein (GAP) 10-like. GAP10-like may be a GAP with activity towards RhoA and Cdc42. Similar to GRAF and GRAF2, it contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of the related proteins GRAF and OPHN1, directly interact with their Rho GAP domains and inhibit theiractivity. The autoinhibited proteins are capable of binding membranes and tubulating liposomes, showing that the membrane-tubulation and GAP-inhibitory functions of the BAR domain
Probab=31.26 E-value=6.2e+02 Score=26.30 Aligned_cols=41 Identities=15% Similarity=0.238 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcCC
Q 006561 460 QITIHLENELSSLSSSFTKWISAQKFYLQAINNWLVKCVSL 500 (640)
Q Consensus 460 qaT~qLE~El~~W~ssF~~wI~aQK~YV~aLngWL~~cl~~ 500 (640)
+....|.........+...+.++||.|+.+|+.-=..|+-.
T Consensus 16 ~~ik~liK~c~~li~A~k~~~~a~~~Fa~sL~~f~~~~igd 56 (207)
T cd07634 16 KFIKELIKDGSLLIGALRNLSMAVQKFSQSLQDFQFECIGD 56 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 45667778888889999999999999999999998888753
No 41
>PF09241 Herp-Cyclin: Herpesviridae viral cyclin; InterPro: IPR015322 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. This entry represents a domain found in a family of viral cyclins that specifically activate CDK6 of host cells to a very high degree []. This domain adopts a helical structure consisting of five alpha-helices, with one helix surrounded by the others.; PDB: 1XO2_A 1JOW_A 2F2C_A 2EUF_A 1BU2_A.
Probab=29.49 E-value=29 Score=31.31 Aligned_cols=14 Identities=21% Similarity=0.228 Sum_probs=11.1
Q ss_pred ccchhhHHHHHHHH
Q 006561 408 DKELQPQLEDLIEG 421 (640)
Q Consensus 408 DEEL~PQL~ELI~G 421 (640)
-|||||||.|+..-
T Consensus 18 pe~~wpql~e~~s~ 31 (106)
T PF09241_consen 18 PEDFWPQLFEATSI 31 (106)
T ss_dssp -GGGHHHHHHHHHH
T ss_pred cHHHhHHHHHHHHH
Confidence 48999999998653
No 42
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=29.48 E-value=3.6e+02 Score=25.61 Aligned_cols=84 Identities=20% Similarity=0.284 Sum_probs=59.6
Q ss_pred chHhHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHhhhhcCCCchhhHhHHHHHHHHhhHHHHHHHHHHHHHHHhh
Q 006561 326 SHASTLDRLYAWERKLYDEVKASEMIRREY-DSKCRILRQLESKGVSSHKIDKTRAVVKDLHSRIKVAIHRIDSISKRIE 404 (640)
Q Consensus 326 SHSSTLdKLYAWEKKLYdEVKa~E~lRi~Y-eKKc~~Lr~qd~kGad~~kIDKTRa~Vk~L~TrI~VaIqsVdsiS~~I~ 404 (640)
.++++|.||=.-=--|=+|+..-+.-|-.- +.=++.++.-+.-.+....++.-+..+++|..|+..+.+-+---+-.++
T Consensus 20 ~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~ve 99 (120)
T PF12325_consen 20 RLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVE 99 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 466666666544444555666555555533 3334445555555566788999999999999999999999999999999
Q ss_pred hhhcc
Q 006561 405 ELRDK 409 (640)
Q Consensus 405 kLRDE 409 (640)
.||.+
T Consensus 100 EL~~D 104 (120)
T PF12325_consen 100 ELRAD 104 (120)
T ss_pred HHHHH
Confidence 88875
No 43
>KOG2008 consensus BTK-associated SH3-domain binding protein SAB [Signal transduction mechanisms]
Probab=27.78 E-value=3.3e+02 Score=30.27 Aligned_cols=81 Identities=27% Similarity=0.309 Sum_probs=55.3
Q ss_pred chHhHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHhhhhcCCCchhhHhHHHHHHHHhhHHHHHHHHHHHHHH
Q 006561 326 SHASTLDRLYAWERKLYDEVK----ASEMIRREYDSKCRILRQLESKGVSSHKIDKTRAVVKDLHSRIKVAIHRIDSISK 401 (640)
Q Consensus 326 SHSSTLdKLYAWEKKLYdEVK----a~E~lRi~YeKKc~~Lr~qd~kGad~~kIDKTRa~Vk~L~TrI~VaIqsVdsiS~ 401 (640)
-|+||.-++++-+-+|-+=-| |--+-|--|++|...-+.+++-- ..|+--.+.|+.----+..+++.++.||.
T Consensus 149 ~Has~a~~~l~l~~~~R~~ek~n~~AIkKSrpYfE~k~~~t~~le~qk---~tv~~Leaev~~~K~~Y~~slrnLE~ISd 225 (426)
T KOG2008|consen 149 VHASTAARYLALMGRMRQLEKKNKRAIKKSRPYFELKAKYTVQLEQQK---KTVDDLEAEVTLAKGEYKMSLRNLEMISD 225 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHhhcchHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 399999999988866655443 33455778888887776664321 23444445555555556788999999999
Q ss_pred Hhhhhhcc
Q 006561 402 RIEELRDK 409 (640)
Q Consensus 402 ~I~kLRDE 409 (640)
+|+.=|-.
T Consensus 226 ~IHeeRss 233 (426)
T KOG2008|consen 226 EIHEERSS 233 (426)
T ss_pred HHHHhhhh
Confidence 99876643
No 44
>cd07635 BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase 2 (GRAF2), also called Rho GTPase activating protein 10 (ARHGAP10) or PS-GAP, is a GAP with activity towards Cdc42 and RhoA which regulates caspase-activated p21-activated protein kinase-2 (PAK-2p34). GRAF2 interacts with PAK-2p34, leading to its stabilization and decrease of cell death. It is highly expressed in skeletal muscle and also interacts with PKNbeta, which is a target of Rho. GRAF2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of the related prote
Probab=27.20 E-value=7.2e+02 Score=25.79 Aligned_cols=41 Identities=10% Similarity=0.165 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcCC
Q 006561 460 QITIHLENELSSLSSSFTKWISAQKFYLQAINNWLVKCVSL 500 (640)
Q Consensus 460 qaT~qLE~El~~W~ssF~~wI~aQK~YV~aLngWL~~cl~~ 500 (640)
+....|.........+...+.++||.|+.+|+..=.-|+-.
T Consensus 16 k~i~kLiK~c~~~i~a~k~~~~a~~~Fa~~L~~f~~~~~gd 56 (207)
T cd07635 16 RFIKELLKDGKNLIAATKSLSAAQRKFAHSLRDFKFEFIGD 56 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 45566777778888889999999999999999998888643
No 45
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=27.09 E-value=7e+02 Score=25.61 Aligned_cols=73 Identities=16% Similarity=0.205 Sum_probs=44.3
Q ss_pred chHhHHHHHHHHHHHHHHHHH------------------hhHHHHHHHHHHHHHHHhhhhcCCCchhhHhHHHHHHHHhh
Q 006561 326 SHASTLDRLYAWERKLYDEVK------------------ASEMIRREYDSKCRILRQLESKGVSSHKIDKTRAVVKDLHS 387 (640)
Q Consensus 326 SHSSTLdKLYAWEKKLYdEVK------------------a~E~lRi~YeKKc~~Lr~qd~kGad~~kIDKTRa~Vk~L~T 387 (640)
++..-+++|-.|-+++.++.| .-++.|..|+.+|+.+......-.... -+.+...++++..
T Consensus 82 ~L~~~v~~l~~~~~~~~~~~K~~~~~~~k~qk~~~~~~~~l~KaKk~Y~~~C~e~e~a~~~~~~~~-~~~~~ke~eK~~~ 160 (239)
T cd07647 82 SLREEAEKLEEFREKQKEERKKTEDIMKRSQKNKKELYKKTMKAKKSYEQKCREKDKAEQAYEKSS-SGAQPKEAEKLKK 160 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCCHHHHHHHHH
Confidence 344445666666666655533 556779999999999865432111100 1245666777777
Q ss_pred HHHHHHHHHHHH
Q 006561 388 RIKVAIHRIDSI 399 (640)
Q Consensus 388 rI~VaIqsVdsi 399 (640)
|+.-+.+.++..
T Consensus 161 K~~k~~~~~~~a 172 (239)
T cd07647 161 KAAQCKTSAEEA 172 (239)
T ss_pred HHHHHHHHHHHH
Confidence 777777766654
No 46
>PF10368 YkyA: Putative cell-wall binding lipoprotein; InterPro: IPR019454 The YkyA family of proteins contain a lipoprotein signal and a hydrolase domain. They are similar to cell wall binding proteins and might also be recognisable by a host immune defence system. It is thus likely that they function in pathways important for pathogenicity []. ; PDB: 2AP3_A.
Probab=26.98 E-value=4.7e+02 Score=26.77 Aligned_cols=104 Identities=16% Similarity=0.262 Sum_probs=59.7
Q ss_pred chHhHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHhhhhcCCCchhhHhHHHHHHHHhhHHHHHHHHHHHHHH
Q 006561 326 SHASTLDRLYAWERKLYDEVK----ASEMIRREYDSKCRILRQLESKGVSSHKIDKTRAVVKDLHSRIKVAIHRIDSISK 401 (640)
Q Consensus 326 SHSSTLdKLYAWEKKLYdEVK----a~E~lRi~YeKKc~~Lr~qd~kGad~~kIDKTRa~Vk~L~TrI~VaIqsVdsiS~ 401 (640)
+-..+|.+|=.=+.+||+.+- ..-..+...-.+. ...++.=+..++....-|.-+-.-+..+.+
T Consensus 36 ~~~k~L~~lE~~~q~lY~~ii~~~~~d~~~v~~~~~~a------------~~nv~~R~k~l~~Ek~ai~~a~~e~~~~~~ 103 (204)
T PF10368_consen 36 EQQKKLNELEKKEQELYEQIIQLGKDDNDEVKKLSDEA------------LKNVDEREKELKKEKEAIEKAKEEFKKAKK 103 (204)
T ss_dssp HHHHHHHHHHHHHHTTTTGG---G-SSHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777778888871 1111111111111 134556666777777777888888999999
Q ss_pred HhhhhhccchhhHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 006561 402 RIEELRDKELQPQLEDLIEGLSRMWEVMFECHKLQFQVIS 441 (640)
Q Consensus 402 ~I~kLRDEEL~PQL~ELI~GL~rMWk~MlECHq~Q~~ii~ 441 (640)
.|.+|.|+.+..|+.+|+.-|...-+..-.-|..=..+|.
T Consensus 104 ~i~ki~d~~~k~qa~~l~~~~~~ry~~~~~l~~~Y~~~l~ 143 (204)
T PF10368_consen 104 YIDKIEDEKLKKQAKELNEAMKKRYKSYDKLYKAYKKALE 143 (204)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888776665555544444443
No 47
>PF08655 DASH_Ask1: DASH complex subunit Ask1; InterPro: IPR013964 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=26.76 E-value=1.8e+02 Score=25.20 Aligned_cols=49 Identities=24% Similarity=0.476 Sum_probs=38.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHH------HhHHHHHH
Q 006561 383 KDLHSRIKVAIHRIDSISKRIEELRDKELQPQLEDLIEGLS------RMWEVMFE 431 (640)
Q Consensus 383 k~L~TrI~VaIqsVdsiS~~I~kLRDEEL~PQL~ELI~GL~------rMWk~MlE 431 (640)
+.|+=.|....|-||+==++.+++--..+.|.+-+--..-. ++|+.|+|
T Consensus 2 E~ldQ~iTl~LQeID~N~s~~~~iit~~IlP~v~rY~~~s~~i~~~~~fwk~fFe 56 (66)
T PF08655_consen 2 EQLDQEITLLLQEIDSNFSRCHRIITDKILPAVERYGESSEKIWDSAKFWKQFFE 56 (66)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 46777889999999998888888888899999876544433 77888876
No 48
>cd07656 F-BAR_srGAP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs, all of which are expressed during embryonic and early development in the nervous system but with different localization and timing. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=25.83 E-value=7.8e+02 Score=25.74 Aligned_cols=142 Identities=15% Similarity=0.193 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCCcccccCCCCCCCCCCCCCCchHHHHHHHHHHhhcc
Q 006561 458 HRQITIHLENELSSLSSSFTKWISAQKFYLQAINNWLVKCVSLPQKSSRRKRRVPAPPPLRNFGPPIYATCSVWLDLLDW 537 (640)
Q Consensus 458 hrqaT~qLE~El~~W~ssF~~wI~aQK~YV~aLngWL~~cl~~~~e~~~~~~~~~s~~P~r~~aPpIf~lC~~W~~aLdr 537 (640)
|-+.-++|-..|..| |..=...-++|-+.|-.=-.+ +........ + .. ...|.+..|.-|..-|+.
T Consensus 13 ~te~~i~lLed~~~F---~r~RaeIE~EYs~~L~kL~k~---~~~K~~~~~----~---~~-~~~~~~s~~~~W~~lL~q 78 (241)
T cd07656 13 RTEAQVQLLADLQDY---FRRRAEIELEYSRSLEKLADR---FSSKHKNEK----S---KR-EDWSLLSPVNCWNTLLVQ 78 (241)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---hcccccccc----c---cc-cccCcCCHHHHHHHHHHH
Confidence 444555555555554 445556678888888754333 222111000 0 00 123455679999998886
Q ss_pred CChHHHHHHHHHHHHHHhhHhHhhh------hhhcCCCChhhhhhhccccccccccchhhhhccHHHHHHHHhhhhHHHH
Q 006561 538 LPSKELTDSIKSLASETSHFLPRQE------KNQGKSGSETAVNLLADDASEDWISGFDRFRSSLVGFLGQLNNFSENSV 611 (640)
Q Consensus 538 Lp~k~v~~AIksFa~~v~~l~~qQe------~~~~kk~~~~~~~~~~~~~~~~~~~~~~~Lq~~L~~~l~aL~~Fs~~S~ 611 (640)
. +.+......|+..+...+.++- ..+.+|...+ .-..+|..|.+++..|.+ +.
T Consensus 79 t--~~~a~~h~~lse~l~~~i~~~l~~l~~d~~~~~Kk~~e---------------~~~~lq~el~~~~~eL~k----~k 137 (241)
T cd07656 79 T--KQESRDHSTLSDIYSNNLVQRLGQMSEDLQRISKKCRE---------------IGSQLHDELLRVLNELQT----AM 137 (241)
T ss_pred H--HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHH----HH
Confidence 3 3444555555554444443331 1111111111 112378888888888876 77
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhh
Q 006561 612 QMYADLKKAIQDAKIKYDELVNR 634 (640)
Q Consensus 612 k~YeeL~~~~Eeak~~y~~~~~~ 634 (640)
+.|+...+.++.|+.+|.....+
T Consensus 138 K~Y~~~~~ea~~A~~K~~~ae~~ 160 (241)
T cd07656 138 KTYHTYHAESKSAERKLKEAEKQ 160 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999998888888888766544
No 49
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=25.57 E-value=6.4e+02 Score=26.35 Aligned_cols=18 Identities=17% Similarity=0.516 Sum_probs=14.1
Q ss_pred hhHHHHHHHHHHHHHHHh
Q 006561 347 ASEMIRREYDSKCRILRQ 364 (640)
Q Consensus 347 a~E~lRi~YeKKc~~Lr~ 364 (640)
.-++-|..|++.|+.+..
T Consensus 134 ~l~kaKk~Y~~~cke~e~ 151 (258)
T cd07655 134 KVEKAKKAYHAACKAEKS 151 (258)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 356679999999998755
No 50
>PF09321 DUF1978: Domain of unknown function (DUF1978); InterPro: IPR015400 This domain is found in various hypothetical proteins produced by the bacterium Chlamydia pneumoniae. Their exact function has not, as yet, been identified. This entry includes the IncA proteins
Probab=25.55 E-value=8.5e+02 Score=26.03 Aligned_cols=76 Identities=17% Similarity=0.258 Sum_probs=51.3
Q ss_pred hHHHHHHHHHHHhHHHH--HHHHHHHHHH--HHHHhccCCCcccCCChhHHHHHH-----HHHHHHHHHHHHHHHHHHHh
Q 006561 413 PQLEDLIEGLSRMWEVM--FECHKLQFQV--ISVAYNNAHSKISIKSDSHRQITI-----HLENELSSLSSSFTKWISAQ 483 (640)
Q Consensus 413 PQL~ELI~GL~rMWk~M--lECHq~Q~~i--i~~a~~~~~~~~~~tse~hrqaT~-----qLE~El~~W~ssF~~wI~aQ 483 (640)
-.|-+..+.+.+-|+-. .|||++|-++ ++.+|..- ....-+..++.|. .||..+.+--......+..|
T Consensus 94 k~l~d~~~~~~~~~~~~~~qE~~ra~eRl~~LqalYp~v---~v~~~e~~~q~t~~~~~~dLe~~~e~IE~~y~~cv~eQ 170 (241)
T PF09321_consen 94 KKLKDAEKRRLRCLQDFYDQEIERAQERLRELQALYPEV---SVSEVETERQETVSSNASDLEKAYENIEEEYQQCVREQ 170 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC---chhHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555544 4889998776 55555332 2233566777777 89988888888888899999
Q ss_pred HHHHHHHH
Q 006561 484 KFYLQAIN 491 (640)
Q Consensus 484 K~YV~aLn 491 (640)
..|++-+-
T Consensus 171 e~YWke~e 178 (241)
T PF09321_consen 171 EDYWKEEE 178 (241)
T ss_pred HHHHHHHH
Confidence 99998763
No 51
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=24.27 E-value=2.7e+02 Score=30.69 Aligned_cols=55 Identities=27% Similarity=0.439 Sum_probs=41.8
Q ss_pred hhhHhHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHHHhHHHHHHHHHH
Q 006561 373 HKIDKTRAVVKDLHSRIKVAIHRIDSISKRIEELRDKELQPQLEDLIEGLSRMWEVMFECHKL 435 (640)
Q Consensus 373 ~kIDKTRa~Vk~L~TrI~VaIqsVdsiS~~I~kLRDEEL~PQL~ELI~GL~rMWk~MlECHq~ 435 (640)
++++-|.+-+++||+-|.-+...|.+ |..-|--||--|+|-+.+.=-...+--.+
T Consensus 241 ~~~~~~~~~Ldklh~eit~~LEkI~S--------REK~lNnqL~~l~q~fr~a~~~lse~~e~ 295 (384)
T KOG0972|consen 241 QKVGNVGPYLDKLHKEITKALEKIAS--------REKSLNNQLASLMQKFRRATDTLSELREK 295 (384)
T ss_pred HhhcchhHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788999999999999998888877 66667779999999877654433333333
No 52
>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Formin Binding Protein 17 (FBP17), also called FormiN Binding Protein 1 (FNBP1), is involved in dynamin-mediated endocytosis. It is recruited to clathrin-coated pits late in the endocytosis process and may play a role in the invagination and scission steps. FBP17 binds in vivo to tankyrase, a protein involved in telomere maintenance and mitogen activated protein kinase (MAPK) signaling. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=24.25 E-value=6.6e+02 Score=26.42 Aligned_cols=96 Identities=10% Similarity=0.186 Sum_probs=60.4
Q ss_pred hHhHHHHHHHHHHHHHHHHH-----------hhHHHHHHHHHHHHHHHhhhhcC--CCchhhHhHHHHHHHHhhHHHHHH
Q 006561 327 HASTLDRLYAWERKLYDEVK-----------ASEMIRREYDSKCRILRQLESKG--VSSHKIDKTRAVVKDLHSRIKVAI 393 (640)
Q Consensus 327 HSSTLdKLYAWEKKLYdEVK-----------a~E~lRi~YeKKc~~Lr~qd~kG--ad~~kIDKTRa~Vk~L~TrI~VaI 393 (640)
+.+-+.++=.|-|.+|.+.. .-|+.+..|++=|+.-...-.+- ++. .++-|++.++++..+.....
T Consensus 98 l~~~~~~~k~~rK~~~~~~~k~qk~~~~~~~~lekaKk~Y~~acke~E~A~~~~~ka~~-d~~~sk~~~eK~k~~~~~~~ 176 (253)
T cd07676 98 LTRYVQELKQERKSHFHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFEKMDA-DINVTKADVEKARQQAQIRH 176 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cccCCHHHHHHHHHHHHHHH
Confidence 44445567788888887654 45667888888886554333221 221 35567888888888888887
Q ss_pred HHHHHHHHH----h---hhh---hccchhhHHHHHHHHHH
Q 006561 394 HRIDSISKR----I---EEL---RDKELQPQLEDLIEGLS 423 (640)
Q Consensus 394 qsVdsiS~~----I---~kL---RDEEL~PQL~ELI~GL~ 423 (640)
|.++..-.. | |++ .=.|.-|++++.+|-|-
T Consensus 177 ~~~e~aKn~Y~~~l~~~N~~q~~~Y~e~mp~vfd~lQ~le 216 (253)
T cd07676 177 QMAEDSKAEYSSYLQKFNKEQHEHYYTHIPNIFQKIQEME 216 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 777754333 2 222 23456788888887754
No 53
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=23.81 E-value=1.3e+03 Score=27.41 Aligned_cols=142 Identities=13% Similarity=0.247 Sum_probs=88.6
Q ss_pred hHhHHHHHH-----HHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhcCCCchhhHhHHHHHHHHhhHHHHHHHHHHHHHH
Q 006561 327 HASTLDRLY-----AWERKLYDEVKASEMIRREYDSKCRILRQLESKGVSSHKIDKTRAVVKDLHSRIKVAIHRIDSISK 401 (640)
Q Consensus 327 HSSTLdKLY-----AWEKKLYdEVKa~E~lRi~YeKKc~~Lr~qd~kGad~~kIDKTRa~Vk~L~TrI~VaIqsVdsiS~ 401 (640)
-.-++++.| .|. +.|+++-..+.+ .+|.+++..|+..+- .++..|-+....++.|...|.-..+.|.+...
T Consensus 165 ~~~~~~~~~k~~~~~w~-~~~~~Lp~~~~~-~~yk~~v~~i~~~~i--k~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~ 240 (555)
T TIGR03545 165 TAEEIEKSLKAMQQKWK-KRKKDLPNKQDL-EEYKKRLEAIKKKDI--KNPLELQKIKEEFDKLKKEGKADKQKIKSAKN 240 (555)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHhcCCchhH-HHHHHHHHHHHhccC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455544 342 345666544444 478888888888422 56678889999999999999999999999888
Q ss_pred HhhhhhccchhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCcccCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006561 402 RIEELRDKELQPQLEDLIEGLSRMWEVMFECHKLQFQVISVAYNNAHSKISIKSDSHRQITIHLENELSSLSSSFTKWIS 481 (640)
Q Consensus 402 ~I~kLRDEEL~PQL~ELI~GL~rMWk~MlECHq~Q~~ii~~a~~~~~~~~~~tse~hrqaT~qLE~El~~W~ssF~~wI~ 481 (640)
.++..++ .+..|+-+|-+. =+.=+.-+...+ ....++.+--+..-+-.++..|...|-.|..
T Consensus 241 ~l~~~~~-~~~~~~~~lk~a-----------p~~D~~~L~~~~------~~~~~~~~~~~~~L~g~~i~~~~~~~~~~y~ 302 (555)
T TIGR03545 241 DLQNDKK-QLKADLAELKKA-----------PQNDLKRLENKY------AIKSGDLKNFAVDLFGPEIRKYLQKFLKYYD 302 (555)
T ss_pred HHHHhHH-HHHHHHHHHHhc-----------cHhHHHHHHHHh------CCCcccHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 8887653 222222222111 000011111111 2234556777788889999999999988876
Q ss_pred HhHHHHHHH
Q 006561 482 AQKFYLQAI 490 (640)
Q Consensus 482 aQK~YV~aL 490 (640)
-=.-||...
T Consensus 303 ~~~p~i~~~ 311 (555)
T TIGR03545 303 QAEPLLNKS 311 (555)
T ss_pred HHhHhhccc
Confidence 655555443
No 54
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=23.78 E-value=8.8e+02 Score=26.62 Aligned_cols=82 Identities=26% Similarity=0.497 Sum_probs=53.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHHHhHHHH--HHHHHHHHHH-HHHHhccCCCcccCCC
Q 006561 379 RAVVKDLHSRIKVAIHRIDSISKRIEELRDKELQPQLEDLIEGLSRMWEVM--FECHKLQFQV-ISVAYNNAHSKISIKS 455 (640)
Q Consensus 379 Ra~Vk~L~TrI~VaIqsVdsiS~~I~kLRDEEL~PQL~ELI~GL~rMWk~M--lECHq~Q~~i-i~~a~~~~~~~~~~ts 455 (640)
...||+|.||+.=+...+.- ||.| +.||---|.||=..- -|||++--|. +++|
T Consensus 67 EV~iRHLkakLkes~~~l~d--------RetE----I~eLksQL~RMrEDWIEEECHRVEAQLALKEA------------ 122 (305)
T PF15290_consen 67 EVCIRHLKAKLKESENRLHD--------RETE----IDELKSQLARMREDWIEEECHRVEAQLALKEA------------ 122 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHh--------hHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
Confidence 35788898988866554443 5544 567777788986554 4899987765 3444
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHH
Q 006561 456 DSHRQITIHLENELSSLSSSFTKW-ISAQKFYL 487 (640)
Q Consensus 456 e~hrqaT~qLE~El~~W~ssF~~w-I~aQK~YV 487 (640)
|+-..||...+..-++++..= -.-||=||
T Consensus 123 ---RkEIkQLkQvieTmrssL~ekDkGiQKYFv 152 (305)
T PF15290_consen 123 ---RKEIKQLKQVIETMRSSLAEKDKGIQKYFV 152 (305)
T ss_pred ---HHHHHHHHHHHHHHHhhhchhhhhHHHHHh
Confidence 356677888887777776532 23355444
No 55
>PF06456 Arfaptin: Arfaptin-like domain; InterPro: IPR010504 Arfaptin interacts with ARF1, a small GTPase involved in vesicle budding at the Golgi complex and immature secretory granules. The structure of arfaptin shows that upon binding to a small GTPase, arfaptin forms a an elongated, crescent-shaped dimer of three-helix coiled-coils []. The N-terminal region of ICA69 is similar to arfaptin [].; PDB: 1I4D_B 1I4L_B 1I49_B 1I4T_A 4DCN_D.
Probab=23.27 E-value=8.6e+02 Score=25.33 Aligned_cols=80 Identities=20% Similarity=0.244 Sum_probs=51.1
Q ss_pred HHHhhHHHHHHHHHHHHHHHhhhhc--CCCc---hhh-------HhHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhccch
Q 006561 344 EVKASEMIRREYDSKCRILRQLESK--GVSS---HKI-------DKTRAVVKDLHSRIKVAIHRIDSISKRIEELRDKEL 411 (640)
Q Consensus 344 EVKa~E~lRi~YeKKc~~Lr~qd~k--Gad~---~kI-------DKTRa~Vk~L~TrI~VaIqsVdsiS~~I~kLRDEEL 411 (640)
-||.-|..|++|+--|..|+.++.. .... .++ ..+|+--.+|.+.+.|-++=++. + |-.-+
T Consensus 135 Tik~ye~aR~EY~ay~~~lke~~~e~~~~~~~~~~~~r~~q~~~~~~k~rf~kLr~Dv~~Kl~LL~~--~-----rv~~~ 207 (229)
T PF06456_consen 135 TIKKYEDARFEYDAYRLWLKEMSDELDPDTAKQEPKFRVAQGNYQEAKERFDKLRSDVLVKLDLLDE--N-----RVNVM 207 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--TSTSSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-----HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCchhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--h-----hHHHH
Confidence 3788999999999999999999822 2211 222 33444444555555555554444 2 33446
Q ss_pred hhHHHHHHHHHHHhHHHHH
Q 006561 412 QPQLEDLIEGLSRMWEVMF 430 (640)
Q Consensus 412 ~PQL~ELI~GL~rMWk~Ml 430 (640)
.-||.-|..+|+.-|....
T Consensus 208 ~~qL~~~~~al~~y~~~~~ 226 (229)
T PF06456_consen 208 SHQLVLFQNALAAYFSGNA 226 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhH
Confidence 6788888888888776543
No 56
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR
Probab=22.97 E-value=5.7e+02 Score=26.76 Aligned_cols=69 Identities=14% Similarity=0.236 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHHHHHHhhhhc--CCCchhhHhHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHHHh
Q 006561 348 SEMIRREYDSKCRILRQLESK--GVSSHKIDKTRAVVKDLHSRIKVAIHRIDSISKRIEELRDKELQPQLEDLIEGLSRM 425 (640)
Q Consensus 348 ~E~lRi~YeKKc~~Lr~qd~k--Gad~~kIDKTRa~Vk~L~TrI~VaIqsVdsiS~~I~kLRDEEL~PQL~ELI~GL~rM 425 (640)
=++-|..|+..|+.++.-... -.+. ..|...++++..++.-+.+.++.. .+-|-+.++-+.....-
T Consensus 122 l~ksKk~Ye~~Cke~~~a~q~~~k~~~---~~t~keleK~~~K~~k~~~~~~~a---------~~~Y~~~v~~l~~~~~~ 189 (242)
T cd07671 122 TMESKKTYEQRCREADEAEQTFERSSS---TGNPKQSEKSQNKAKQCRDAATEA---------ERVYKQNIEQLDKARTE 189 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc---cCCHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH
Confidence 366789999999988763210 0111 246667888888888888888765 46678888877888888
Q ss_pred HHH
Q 006561 426 WEV 428 (640)
Q Consensus 426 Wk~ 428 (640)
|..
T Consensus 190 w~~ 192 (242)
T cd07671 190 WET 192 (242)
T ss_pred HHH
Confidence 853
No 57
>cd07685 F-BAR_Fes The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), is a cytoplasmic (or nonreceptor) tyrosine kinase whose gene was first isolated from tumor-causing retroviruses. It is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells, and plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. Fes kinase has also been implicated as a tumor suppressor in colorectal cancer. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane def
Probab=22.70 E-value=9.5e+02 Score=25.60 Aligned_cols=124 Identities=13% Similarity=0.130 Sum_probs=70.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhhcCCCCcccccCCCCCCCCCCCCCCchHHHHHHHHHHhhccCChHHHHHHHHHHHH
Q 006561 473 SSSFTKWISAQKFYLQAINNWLVKCVSLPQKSSRRKRRVPAPPPLRNFGPPIYATCSVWLDLLDWLPSKELTDSIKSLAS 552 (640)
Q Consensus 473 ~ssF~~wI~aQK~YV~aLngWL~~cl~~~~e~~~~~~~~~s~~P~r~~aPpIf~lC~~W~~aLdrLp~k~v~~AIksFa~ 552 (640)
..+++.=+++.|+|-..|..=..--..... ++. +.. .-++--|-..|...|+. .+.+..-++.|+.
T Consensus 25 k~~m~~raK~d~eya~~L~~~~~q~~k~~~----~~~------~~~--~~~~s~i~~sW~~il~Q--TE~isk~~~~~Ae 90 (237)
T cd07685 25 KKWMSQRAKSDREYSGMLHHMSAQVEKLDR----SQH------GAL--SMLSSPISQSWAVLVSQ--TETLSQVLRKHAE 90 (237)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhccccc----cch------hhh--cccCChHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 344556678999999998765442211111 100 111 11111367889998876 4567888899999
Q ss_pred HHhhHhHhhhh------hhcCCCChhhhhhhccccccccccchhhhhccHHHHHHHHhhhhHH----HHHHHHHHHHHHH
Q 006561 553 ETSHFLPRQEK------NQGKSGSETAVNLLADDASEDWISGFDRFRSSLVGFLGQLNNFSEN----SVQMYADLKKAIQ 622 (640)
Q Consensus 553 ~v~~l~~qQe~------~~~kk~~~~~~~~~~~~~~~~~~~~~~~Lq~~L~~~l~aL~~Fs~~----S~k~YeeL~~~~E 622 (640)
++..-..++-. ++.|| ++......+=..|..-+.. ..+.|.++.+.++
T Consensus 91 eln~~~~~kLs~L~~~k~~~rK----------------------~~~~~~q~i~~e~~~~t~~eveK~Kk~Y~~~c~~~e 148 (237)
T cd07685 91 DLNAGPLSKLSLLIRDKQQLRK----------------------TFSEQWQLLKQEYTKTTQQDIEKLKSQYRSLAKDSA 148 (237)
T ss_pred HHHhHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877665521 11111 1222222222223222222 2348999999999
Q ss_pred HHHHHhhhhh
Q 006561 623 DAKIKYDELV 632 (640)
Q Consensus 623 eak~~y~~~~ 632 (640)
.||.+|....
T Consensus 149 ~AR~K~ekas 158 (237)
T cd07685 149 QAKRKYQEAS 158 (237)
T ss_pred HHHHHHHhcc
Confidence 9999998754
No 58
>PF10428 SOG2: RAM signalling pathway protein; InterPro: IPR019487 The RAM signalling pathway regulates Ace2p transcription factor activity and cellular morphogenesis in Saccharomyces cerevisiae (Baker's yeast), and is thought to be conserved amongst eukaryotes []. This entry is found in one of the components of this pathway, the leucine-rich repeat-containing protein SOG2.
Probab=22.32 E-value=8.2e+02 Score=27.97 Aligned_cols=91 Identities=16% Similarity=0.229 Sum_probs=62.7
Q ss_pred HHHHHHHHH-hhHHHHHHHHHHHHHHHhhhhcCCCc----hh-hHhHHHHHHHHhhHHHHHHHHHHHHHHHhhhhh----
Q 006561 338 ERKLYDEVK-ASEMIRREYDSKCRILRQLESKGVSS----HK-IDKTRAVVKDLHSRIKVAIHRIDSISKRIEELR---- 407 (640)
Q Consensus 338 EKKLYdEVK-a~E~lRi~YeKKc~~Lr~qd~kGad~----~k-IDKTRa~Vk~L~TrI~VaIqsVdsiS~~I~kLR---- 407 (640)
-.|||+=++ +-+.+-..|. +|..+..+++.. .. -+-....+|+|-.+-..+++.-+....++..||
T Consensus 301 dekl~~~L~~at~~a~~vlp----~l~~~~~~~~~~a~~~~~~~~~~~~k~k~L~~~C~~~~~~T~~L~~rLs~ik~~~~ 376 (445)
T PF10428_consen 301 DEKLYLALQNATDLALHVLP----QLTSQFSKSARAAAQQRAIPPSLVQKWKELISKCNSAIDQTERLKSRLSTIKNQLK 376 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 346666555 2333333333 344444443332 12 455566799999999999999999999999999
Q ss_pred ----ccchhhHHHHHHHHHHHhHHHHHHH
Q 006561 408 ----DKELQPQLEDLIEGLSRMWEVMFEC 432 (640)
Q Consensus 408 ----DEEL~PQL~ELI~GL~rMWk~MlEC 432 (640)
..--++.+-|+|++|++-|=.+...
T Consensus 377 ep~~~~~~~~~fwe~~~~Fiks~i~l~~~ 405 (445)
T PF10428_consen 377 EPGGGIREQKEFWEDCNSFIKSWISLLAK 405 (445)
T ss_pred CCCCCccccHHHHHHHHHHHHHHHHHHHH
Confidence 3455788889999999999888764
No 59
>smart00146 PI3Kc Phosphoinositide 3-kinase, catalytic domain. Phosphoinositide 3-kinase isoforms participate in a variety of processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, and apoptosis. These homologues may be either lipid kinases and/or protein kinases: the former phosphorylate the 3-position in the inositol ring of inositol phospholipids. The ataxia telangiectesia-mutated gene produced, the targets of rapamycin (TOR) and the DNA-dependent kinase have not been found to possess lipid kinase activity. Some of this family possess PI-4 kinase activities.
Probab=22.24 E-value=82 Score=31.49 Aligned_cols=86 Identities=19% Similarity=0.179 Sum_probs=53.6
Q ss_pred hhhhccchhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-HhccC-CCc-c--cCCChhHHHHHHHHHHHHHHHHHH---
Q 006561 404 EELRDKELQPQLEDLIEGLSRMWEVMFECHKLQFQVISV-AYNNA-HSK-I--SIKSDSHRQITIHLENELSSLSSS--- 475 (640)
Q Consensus 404 ~kLRDEEL~PQL~ELI~GL~rMWk~MlECHq~Q~~ii~~-a~~~~-~~~-~--~~tse~hrqaT~qLE~El~~W~ss--- 475 (640)
..||-+|+.-||..|+.. ||+.-.||++....+..= +-..+ ... + .+.+.+..+. |.+|...
T Consensus 8 dDlR~D~~~~ql~~~~n~---il~~~~e~~~~~l~~~~y~vip~~~~~GlIE~v~~~~sl~~i-------l~~~~~~~~~ 77 (202)
T smart00146 8 DDLRQDERVLQLLRLMNK---ILQKDGETRRRDLHLRPYKVIPTGPKSGLIEVVPNSTTLHQI-------LYDWFKKKFP 77 (202)
T ss_pred CcccHHHHHHHHHHHHHH---HHHhCcccccCceEeeeeEEEEcCCCcceEEEcCCchhHHHH-------HHHHHHHHCc
Confidence 568999999999888765 777777777655544320 00111 111 1 1223333333 5566433
Q ss_pred -HHHHHHHhHHHHHHHHHHHHhhcC
Q 006561 476 -FTKWISAQKFYLQAINNWLVKCVS 499 (640)
Q Consensus 476 -F~~wI~aQK~YV~aLngWL~~cl~ 499 (640)
-+.|..+++.|+.+|-+|-..|-.
T Consensus 78 ~~~~~~~~~~~F~~SlA~~s~~~Yi 102 (202)
T smart00146 78 DPEDYFEARKNFTRSCAGYSVITYI 102 (202)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557999999999999999776543
No 60
>cd07610 FCH_F-BAR The Extended FES-CIP4 Homology (FCH) or F-BAR (FCH and Bin/Amphiphysin/Rvs) domain, a dimerization module that binds and bends membranes. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. F-BAR domain containing proteins, also known as Pombe Cdc15 homology (PCH) family proteins, include Fes and Fer tyrosine kinases, PACSINs/Syndapins, FCHO, PSTPIP, CIP4-like proteins and srGAPs. Many members also contain an SH3 domain and play roles in endocytosis. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. These tubules have diameters larger than those observed with N-BARs. The F-BAR domains of some members such as NOSTRIN and Rgd1 are important for the subcellular localization of the protein.
Probab=21.67 E-value=7.2e+02 Score=23.83 Aligned_cols=90 Identities=12% Similarity=0.096 Sum_probs=53.0
Q ss_pred HHHHHHHHHH-HHHHHHhhHHHHHHHHHHHHHHHhhhhcCCCchhhHhHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhcc
Q 006561 331 LDRLYAWERK-LYDEVKASEMIRREYDSKCRILRQLESKGVSSHKIDKTRAVVKDLHSRIKVAIHRIDSISKRIEELRDK 409 (640)
Q Consensus 331 LdKLYAWEKK-LYdEVKa~E~lRi~YeKKc~~Lr~qd~kGad~~kIDKTRa~Vk~L~TrI~VaIqsVdsiS~~I~kLRDE 409 (640)
+..+..|.++ ...++...+++...|..-++.+.+ + .-+.-+..|..+...-.--....-.....-+.+. +
T Consensus 88 ~~~~~~~~~~~rk~~~~~~~~~~k~~~~~~~~~~k-k-------~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~q~~~-e 158 (191)
T cd07610 88 LEKVKEDKEQARKKELAEGEKLKKKLQELWAKLAK-K-------ADEEYREQVEKLNPAQSEYEEEKLNKIQAEQERE-E 158 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-------hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-H
Confidence 3455667666 777888889999999988888887 2 2234455555555544444444444444444443 4
Q ss_pred chhhHHHHHHHHHHHhHHHH
Q 006561 410 ELQPQLEDLIEGLSRMWEVM 429 (640)
Q Consensus 410 EL~PQL~ELI~GL~rMWk~M 429 (640)
++.-.|-+++.++...++..
T Consensus 159 ~r~~~~~~~l~~~~~~~~~~ 178 (191)
T cd07610 159 ERLEILKDNLKNYINAIKEI 178 (191)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 44445555555544444443
No 61
>cd00183 TFIIS_I N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
Probab=21.52 E-value=2.3e+02 Score=24.24 Aligned_cols=56 Identities=14% Similarity=0.427 Sum_probs=42.3
Q ss_pred hhhHhHHHHHHHHhhHHHHHHHHHHH--HHHHhhhhhccchhhHHHHHHHHHHHhHHHHH
Q 006561 373 HKIDKTRAVVKDLHSRIKVAIHRIDS--ISKRIEELRDKELQPQLEDLIEGLSRMWEVMF 430 (640)
Q Consensus 373 ~kIDKTRa~Vk~L~TrI~VaIqsVds--iS~~I~kLRDEEL~PQL~ELI~GL~rMWk~Ml 430 (640)
...+..-..++.|.. +.+..+.+.+ |-..+++||.-.= |++-.|..+|.+=||.+.
T Consensus 18 ~~~~~~~~~L~~L~~-~~it~~~L~~T~iG~~V~~Lrkh~~-~~i~~~A~~Lv~~Wk~~v 75 (76)
T cd00183 18 EEVSRLLDLLRLLKK-LPLTVEILKETRIGKKVNSLRKHSN-EKIRKLAKALIKSWKKLV 75 (76)
T ss_pred CCHHHHHHHHHHHhc-CCCCHHHHHHCCHHHHHHHHHcCCc-HHHHHHHHHHHHHHHHhc
Confidence 345556666777766 5566666655 6689999997644 999999999999999864
No 62
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=20.70 E-value=9.4e+02 Score=24.78 Aligned_cols=35 Identities=9% Similarity=0.038 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 006561 461 ITIHLENELSSLSSSFTKWISAQKFYLQAINNWLV 495 (640)
Q Consensus 461 aT~qLE~El~~W~ssF~~wI~aQK~YV~aLngWL~ 495 (640)
....|.......+.+...++++|+.|+.+|+.-=.
T Consensus 17 ~l~kl~K~~k~~~~agk~~~~a~~~F~~~L~~f~~ 51 (200)
T cd07639 17 RLEKLVKLGSGMLEGGRHYCAASRAFVDGLCDLAH 51 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44556666666777777888888888888877633
No 63
>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2), also called centaurin beta-2, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=20.42 E-value=9.5e+02 Score=24.72 Aligned_cols=25 Identities=4% Similarity=0.122 Sum_probs=18.0
Q ss_pred ChHHHHHHHHHHHHHHhhHhHhhhh
Q 006561 539 PSKELTDSIKSLASETSHFLPRQEK 563 (640)
Q Consensus 539 p~k~v~~AIksFa~~v~~l~~qQe~ 563 (640)
.|+.+..+|+.|+..+..|-.-++.
T Consensus 55 ~De~i~~~l~kF~~~l~ei~~~~~~ 79 (200)
T cd07638 55 KDAVIETSLTKFSDTLQEMINYHTI 79 (200)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHH
Confidence 4446678888888888887766643
No 64
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=20.30 E-value=4.5e+02 Score=27.85 Aligned_cols=75 Identities=19% Similarity=0.169 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhcCCCchhhHhHHHHHHHHhhHHHHHHHHHHHHHHHhhhhh
Q 006561 330 TLDRLYAWERKLYDEVKASEMIRREYDSKCRILRQLESKGVSSHKIDKTRAVVKDLHSRIKVAIHRIDSISKRIEELR 407 (640)
Q Consensus 330 TLdKLYAWEKKLYdEVKa~E~lRi~YeKKc~~Lr~qd~kGad~~kIDKTRa~Vk~L~TrI~VaIqsVdsiS~~I~kLR 407 (640)
-|+.|++=. +|+.|.-.-+..+..|.+=++.++.+-.+- ...+..++-.+++|..++.---.-|..++.+|.++|
T Consensus 5 ~~~~L~~iq-~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~--~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e 79 (239)
T COG1579 5 NLKSLLAIQ-KLDLEKDRLEPRIKEIRKALKKAKAELEAL--NKALEALEIELEDLENQVSQLESEIQEIRERIKRAE 79 (239)
T ss_pred HHHHHHHHH-HHHHHHHHHHHhhhhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667766 777776555554445544444444432221 123344444555555555544445555555555554
No 65
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=20.17 E-value=1.1e+02 Score=31.51 Aligned_cols=54 Identities=24% Similarity=0.290 Sum_probs=35.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhccCC--------------Cc-ccC-----------CChhHHHHHHHHHHHHHHHH
Q 006561 420 EGLSRMWEVMFECHKLQFQVISVAYNNAH--------------SK-ISI-----------KSDSHRQITIHLENELSSLS 473 (640)
Q Consensus 420 ~GL~rMWk~MlECHq~Q~~ii~~a~~~~~--------------~~-~~~-----------tse~hrqaT~qLE~El~~W~ 473 (640)
+.|...|+.|..+|=.+-+.++-....+. .. ..+ ....+++-..+||+||..|.
T Consensus 116 k~L~~HW~lmkqy~LL~DQ~v~~~~~~~~~~~sfsDaEd~i~d~~l~~~~de~l~~el~~~dr~~k~~ir~lE~el~~w~ 195 (199)
T PF13325_consen 116 KSLQDHWRLMKQYHLLPDQSVQPLPKQDDQVLSFSDAEDLIDDSELKDPRDEALEHELELADRRQKREIRQLENELSRWQ 195 (199)
T ss_pred HHHHHHHHHHHHhchhhccccCCCCCCCccccccccHHHHhhccccccCcccccchhhhHHhHHHHHHHHHHHHHhhhhh
Confidence 46899999999999999888864321110 00 001 11123467899999999996
No 66
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=20.08 E-value=5.6e+02 Score=24.68 Aligned_cols=39 Identities=10% Similarity=0.150 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q 006561 457 SHRQITIHLENELSSLSSSFTKWISAQKFYLQAINNWLVKC 497 (640)
Q Consensus 457 ~hrqaT~qLE~El~~W~ssF~~wI~aQK~YV~aLngWL~~c 497 (640)
.|...-..+-.-+..|...|.+ ..+-.||..++..|+.=
T Consensus 93 ~~~~Vk~kil~li~~W~~~f~~--~~~l~~i~~~y~~L~~~ 131 (144)
T cd03568 93 VHPTVKEKLREVVKQWADEFKN--DPSLSLMSDLYKKLKNE 131 (144)
T ss_pred CCHHHHHHHHHHHHHHHHHhCC--CcccHHHHHHHHHHHHc
Confidence 5556666666678899999985 46788999999999953
Done!