Query 006561
Match_columns 640
No_of_seqs 161 out of 219
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 02:52:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006561.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006561hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1uru_A Amphiphysin; endocytosi 85.9 19 0.00064 34.6 14.9 111 329-443 119-236 (244)
2 2q12_A DIP13 alpha, DCC-intera 84.5 26 0.0009 34.5 15.5 64 539-630 78-142 (265)
3 2v0o_A FCHO2, FCH domain only 77.9 53 0.0018 31.9 15.0 72 346-422 136-207 (276)
4 2q13_A DCC-interacting protein 72.0 96 0.0033 32.1 15.9 31 600-630 112-142 (385)
5 4h8s_A DCC-interacting protein 71.8 83 0.0028 32.8 15.4 120 455-630 39-165 (407)
6 2efl_A Formin-binding protein 67.6 96 0.0033 30.3 14.3 77 345-421 136-223 (305)
7 2fic_A Bridging integrator 1; 67.0 95 0.0032 30.0 14.5 89 343-431 148-237 (251)
8 2efl_A Formin-binding protein 62.8 98 0.0034 30.3 13.1 63 476-554 37-99 (305)
9 3aco_A Pacsin2, protein kinase 50.7 1.3E+02 0.0046 30.5 12.1 21 347-367 158-178 (350)
10 4dyl_A Tyrosine-protein kinase 49.5 1.4E+02 0.0049 31.4 12.4 69 346-421 134-215 (406)
11 2efk_A CDC42-interacting prote 48.9 1.4E+02 0.0047 29.3 11.5 75 461-554 18-92 (301)
12 2efk_A CDC42-interacting prote 44.2 2.4E+02 0.0081 27.6 14.3 24 345-368 129-152 (301)
13 3haj_A Human pacsin2 F-BAR; pa 42.7 2.3E+02 0.008 30.4 13.0 78 345-422 149-236 (486)
14 3mxz_A Tubulin-specific chaper 42.2 1.9E+02 0.0066 26.0 10.6 42 360-401 36-84 (116)
15 3abh_A Pacsin2, protein kinase 40.6 1.3E+02 0.0046 29.8 10.0 72 346-422 157-243 (312)
16 4aj5_1 SKA3, spindle and kinet 38.0 57 0.0019 29.0 5.8 88 318-408 5-95 (101)
17 2j9w_A VPS28, VPS28-PROV prote 36.4 67 0.0023 28.5 6.1 78 393-473 18-97 (102)
18 2j9u_A VPS28, vacuolar protein 35.0 35 0.0012 30.1 4.0 78 393-473 15-92 (96)
19 4dyl_A Tyrosine-protein kinase 35.0 1E+02 0.0035 32.5 8.5 132 460-631 22-160 (406)
20 2xvc_A ESCRT-III, SSO0910; cel 34.8 23 0.00077 28.8 2.5 33 338-370 12-54 (59)
21 2x3v_A Syndapin I, protein kin 34.3 3.7E+02 0.013 26.9 13.3 73 345-422 147-234 (337)
22 3caz_A BAR protein; thermo-aci 32.2 3.8E+02 0.013 26.5 11.6 81 327-429 96-183 (294)
23 3rq9_A TSI2, type VI secretion 32.1 54 0.0018 27.9 4.5 34 389-422 8-44 (85)
24 4efa_E V-type proton ATPase su 29.8 2.5E+02 0.0087 27.1 9.8 68 347-417 54-122 (233)
25 3i2w_A Syndapin, LD46328P; EFC 29.0 2.6E+02 0.0087 27.5 9.8 73 346-423 135-222 (290)
26 3stq_A TSI2, putative uncharac 28.1 63 0.0021 28.2 4.4 34 389-422 33-69 (102)
27 1h7c_A Tubulin-specific chaper 25.2 3.5E+02 0.012 23.8 9.2 37 374-410 56-92 (108)
28 1qsd_A Protein (beta-tubulin b 22.1 4.1E+02 0.014 23.4 9.3 60 355-417 27-94 (106)
No 1
>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A {Drosophila melanogaster} SCOP: a.238.1.1
Probab=85.94 E-value=19 Score=34.62 Aligned_cols=111 Identities=12% Similarity=0.107 Sum_probs=75.0
Q ss_pred hHHHHHHHHHHHHHHH----HHhhHHHHHHHHHHHHHHHhhhhcC---CCchhhHhHHHHHHHHhhHHHHHHHHHHHHHH
Q 006561 329 STLDRLYAWERKLYDE----VKASEMIRREYDSKCRILRQLESKG---VSSHKIDKTRAVVKDLHSRIKVAIHRIDSISK 401 (640)
Q Consensus 329 STLdKLYAWEKKLYdE----VKa~E~lRi~YeKKc~~Lr~qd~kG---ad~~kIDKTRa~Vk~L~TrI~VaIqsVdsiS~ 401 (640)
..|.+|. +.|.+ +|-.+.-|+.||+.-..|.++-.++ .+..+|.++...+....-...-.-.-+-.---
T Consensus 119 ~Pl~~~~----~~~~~i~~~ikKR~~k~lDyD~~~~~l~kl~~k~~k~kd~~kl~~ae~el~~ak~~ye~ln~~L~~eLp 194 (244)
T 1uru_A 119 IPLNTYT----GQFPEMKKKVEKRNRKLIDYDGQRHSFQNLQANANKRKDDVKLTKGREQLEEARRTYEILNTELHDELP 194 (244)
T ss_dssp HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCBTTBCCTTTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4455555 45544 4567888999999999888887664 45566666655554444333322223333334
Q ss_pred HhhhhhccchhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 006561 402 RIEELRDKELQPQLEDLIEGLSRMWEVMFECHKLQFQVISVA 443 (640)
Q Consensus 402 ~I~kLRDEEL~PQL~ELI~GL~rMWk~MlECHq~Q~~ii~~a 443 (640)
.+..+|.+-+.|+|..++.......+.|.+.|+.=..+++.+
T Consensus 195 ~l~~~~~~~~~~~l~~fv~~q~~~~~~~~~~~~~l~~~~~~l 236 (244)
T 1uru_A 195 ALYDSRILFLVTNLQTLFATEQVFHNETAKIYSELEAIVDKL 236 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778888999999999999999888888887766666644
No 2
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A
Probab=84.51 E-value=26 Score=34.47 Aligned_cols=64 Identities=13% Similarity=0.180 Sum_probs=36.4
Q ss_pred ChHHHHHHHHHHHHHHhhHhHhhhhhhcCCCChhhhhhhccccccccccchhhhhccH-HHHHHHHhhhhHHHHHHHHHH
Q 006561 539 PSKELTDSIKSLASETSHFLPRQEKNQGKSGSETAVNLLADDASEDWISGFDRFRSSL-VGFLGQLNNFSENSVQMYADL 617 (640)
Q Consensus 539 p~k~v~~AIksFa~~v~~l~~qQe~~~~kk~~~~~~~~~~~~~~~~~~~~~~~Lq~~L-~~~l~aL~~Fs~~S~k~YeeL 617 (640)
++..+..+++.|...++.|+...... ...+ ..+..-|.+|-..-++.+.+.
T Consensus 78 ~d~~~~~~L~~f~~~l~ei~~~~~~l----------------------------~~~~~~~~~~PL~~f~~~dlk~~ke~ 129 (265)
T 2q12_A 78 DDEVMSSTLQQFSKVIDELSSCHAVL----------------------------STQLADAMMFPITQFKERDLKEILTL 129 (265)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHTHHHHHHHHHTHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455688999999999888655431 1111 133445666655555555555
Q ss_pred HHHHHHHHHHhhh
Q 006561 618 KKAIQDAKIKYDE 630 (640)
Q Consensus 618 ~~~~Eeak~~y~~ 630 (640)
|++.|.++..|..
T Consensus 130 kk~fdk~~~~yd~ 142 (265)
T 2q12_A 130 KEVFQIASNDHDA 142 (265)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555543
No 3
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=77.90 E-value=53 Score=31.87 Aligned_cols=72 Identities=14% Similarity=0.306 Sum_probs=55.5
Q ss_pred HhhHHHHHHHHHHHHHHHhhhhcCCCchhhHhHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHH
Q 006561 346 KASEMIRREYDSKCRILRQLESKGVSSHKIDKTRAVVKDLHSRIKVAIHRIDSISKRIEELRDKELQPQLEDLIEGL 422 (640)
Q Consensus 346 Ka~E~lRi~YeKKc~~Lr~qd~kGad~~kIDKTRa~Vk~L~TrI~VaIqsVdsiS~~I~kLRDEEL~PQL~ELI~GL 422 (640)
++-++.|..|+++|+.+.++...|.....++|.++-+++....+..+++..+.+-. +. ++.+|++++.+|.|
T Consensus 136 ~~l~Kak~~Y~~~c~e~e~~~~~~~s~k~~eK~~~k~~ka~~~Y~~~v~~~n~~~~---~~--~~~~~~~~~~lQ~l 207 (276)
T 2v0o_A 136 QALQKSKENYNAKCVEQERLKKEGATQREIEKAAVKSKKATDTYKLYVEKYALAKA---DF--EQKMTETAQKFQDI 207 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH--HHHHHHHHHHHHHH
Confidence 45567899999999999887766777888999999888888888888877765433 33 56778888776654
No 4
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A
Probab=72.01 E-value=96 Score=32.07 Aligned_cols=31 Identities=23% Similarity=0.253 Sum_probs=19.6
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 006561 600 LGQLNNFSENSVQMYADLKKAIQDAKIKYDE 630 (640)
Q Consensus 600 l~aL~~Fs~~S~k~YeeL~~~~Eeak~~y~~ 630 (640)
..-|.+|-..-++.|.++|++.|.++..|..
T Consensus 112 ~~PL~~f~~~di~~~ke~kk~fek~~~~yd~ 142 (385)
T 2q13_A 112 MFPITQFKERDLKEILTLKEVFQIASNDHDA 142 (385)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557777666666666666666666655554
No 5
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}
Probab=71.84 E-value=83 Score=32.80 Aligned_cols=120 Identities=13% Similarity=0.062 Sum_probs=66.0
Q ss_pred ChhHHHHHHHHHHHHH-------HHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCCcccccCCCCCCCCCCCCCCchHHHH
Q 006561 455 SDSHRQITIHLENELS-------SLSSSFTKWISAQKFYLQAINNWLVKCVSLPQKSSRRKRRVPAPPPLRNFGPPIYAT 527 (640)
Q Consensus 455 se~hrqaT~qLE~El~-------~W~ssF~~wI~aQK~YV~aLngWL~~cl~~~~e~~~~~~~~~s~~P~r~~aPpIf~l 527 (640)
|..=|.....+|.++. +.......++.+++.|..+.+.-+ .+|...... . . +
T Consensus 39 SP~FRa~l~~~E~~~~~l~~~l~kl~k~~~~~~~~~~~~~~a~~~f~-~~l~~~~~~--------~--~------~---- 97 (407)
T 4h8s_A 39 SPQTRSLLSVFEEDAGTLTDYTNQLLQAMQRVYGAQNEMCLATQQLS-KQLLAYEKQ--------N--F------A---- 97 (407)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTTGGGS--------C--C------C----
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhc--------c--c------c----
Confidence 4445666666666654 444455566667777777777643 344322110 0 0 0
Q ss_pred HHHHHHhhccCChHHHHHHHHHHHHHHhhHhHhhhhhhcCCCChhhhhhhccccccccccchhhhhccHHHHHHHHhhhh
Q 006561 528 CSVWLDLLDWLPSKELTDSIKSLASETSHFLPRQEKNQGKSGSETAVNLLADDASEDWISGFDRFRSSLVGFLGQLNNFS 607 (640)
Q Consensus 528 C~~W~~aLdrLp~k~v~~AIksFa~~v~~l~~qQe~~~~kk~~~~~~~~~~~~~~~~~~~~~~~Lq~~L~~~l~aL~~Fs 607 (640)
..-.+.++..+++.|...+..+...+.... ..++ ..+++-|.+|-
T Consensus 98 --------~~~~d~~~~~~l~~f~~~~~ei~~~~~~L~------------------------~~~~---~~i~~pL~~f~ 142 (407)
T 4h8s_A 98 --------LGKGDEEVISTLHYFSKVVDELNLLHTELA------------------------KQLA---DTMVLPIIQFR 142 (407)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHH---HHTHHHHHHHH
T ss_pred --------ccCCcHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHH---HHHHHHHHHHH
Confidence 011355667788889988888876554311 0011 12455666676
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 006561 608 ENSVQMYADLKKAIQDAKIKYDE 630 (640)
Q Consensus 608 ~~S~k~YeeL~~~~Eeak~~y~~ 630 (640)
..-++.|.++|++.|.+...|..
T Consensus 143 k~di~~~ke~kK~Fek~~~~Yd~ 165 (407)
T 4h8s_A 143 EKDLTEVSTLKDLFGLASNEHDL 165 (407)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666667777766666666654
No 6
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=67.60 E-value=96 Score=30.34 Aligned_cols=77 Identities=16% Similarity=0.240 Sum_probs=40.3
Q ss_pred HHhhHHHHHHHHHHHHHHHhhhhc--------CCCchhhHhHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhc---cchhh
Q 006561 345 VKASEMIRREYDSKCRILRQLESK--------GVSSHKIDKTRAVVKDLHSRIKVAIHRIDSISKRIEELRD---KELQP 413 (640)
Q Consensus 345 VKa~E~lRi~YeKKc~~Lr~qd~k--------Gad~~kIDKTRa~Vk~L~TrI~VaIqsVdsiS~~I~kLRD---EEL~P 413 (640)
++.-++.|..|+.+|+.+.....+ +.....++|++.-......++..|-..--......++++. ++..|
T Consensus 136 ~~~l~KaK~~Y~~~~~e~e~a~~~~~~~~~~~~~s~~~~eK~~~k~~~~~~~~~~a~~~Y~~~v~~~n~~~~~~~~~~~~ 215 (305)
T 2efl_A 136 WKQLESSKRRFERDCKEADRAQQYFEKMDADINVTKADVEKARQQAQIRHQMAEDSKADYSSILQKFNHEQHEYYHTHIP 215 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678899999999887764432 3333467777766544433333322222222222333322 45556
Q ss_pred HHHHHHHH
Q 006561 414 QLEDLIEG 421 (640)
Q Consensus 414 QL~ELI~G 421 (640)
++++-+|-
T Consensus 216 ~~~~~lQ~ 223 (305)
T 2efl_A 216 NIFQKIQE 223 (305)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66654443
No 7
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=67.02 E-value=95 Score=30.05 Aligned_cols=89 Identities=10% Similarity=0.023 Sum_probs=48.6
Q ss_pred HHHHhhHHHHHHHHHHHHHHHhhhhcCC-CchhhHhHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHH
Q 006561 343 DEVKASEMIRREYDSKCRILRQLESKGV-SSHKIDKTRAVVKDLHSRIKVAIHRIDSISKRIEELRDKELQPQLEDLIEG 421 (640)
Q Consensus 343 dEVKa~E~lRi~YeKKc~~Lr~qd~kGa-d~~kIDKTRa~Vk~L~TrI~VaIqsVdsiS~~I~kLRDEEL~PQL~ELI~G 421 (640)
+-+|-.+.-|+.||+.-..|+++-.++. +..+|-++...++.....+.-.-.-+-.---.+..+|-+-+.|+|..++..
T Consensus 148 ~~ikKR~~k~lDyD~~~~~l~kl~~k~~kd~~kl~kae~el~~ak~~ye~ln~~L~~eLp~l~~~~~~~~~~~l~~f~~~ 227 (251)
T 2fic_A 148 SRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKAEEELIKAQKVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGL 227 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455778899999988777777766654 555666655555444433332222222222334555666666777777766
Q ss_pred HHHhHHHHHH
Q 006561 422 LSRMWEVMFE 431 (640)
Q Consensus 422 L~rMWk~MlE 431 (640)
-....+.|.+
T Consensus 228 Q~~f~~~~~~ 237 (251)
T 2fic_A 228 EENFHKEMSK 237 (251)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6665555443
No 8
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=62.83 E-value=98 Score=30.28 Aligned_cols=63 Identities=10% Similarity=0.190 Sum_probs=38.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHhhcCCCCcccccCCCCCCCCCCCCCCchHHHHHHHHHHhhccCChHHHHHHHHHHHHHH
Q 006561 476 FTKWISAQKFYLQAINNWLVKCVSLPQKSSRRKRRVPAPPPLRNFGPPIYATCSVWLDLLDWLPSKELTDSIKSLASET 554 (640)
Q Consensus 476 F~~wI~aQK~YV~aLngWL~~cl~~~~e~~~~~~~~~s~~P~r~~aPpIf~lC~~W~~aLdrLp~k~v~~AIksFa~~v 554 (640)
|..=...-+.|.+.|..|-+++...... +...|..+.++..|...+..+ +.+...-..|+..|
T Consensus 37 ~~eRa~iE~eYak~L~kLa~~~~~~~~~--------------~~~~~~~~t~~~aw~~~~~~~--e~~a~~h~~~a~~l 99 (305)
T 2efl_A 37 VKERTEIELSYAKQLRNLSKKYQPKKNS--------------KEEEEYKYTSCKAFISNLNEM--NDYAGQHEVISENM 99 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCC---------------------CTTSHHHHHHHHHHHHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccc--------------CccccccccHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 4555677899999999999987532210 001233557889998777664 34445445555555
No 9
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=50.72 E-value=1.3e+02 Score=30.52 Aligned_cols=21 Identities=14% Similarity=0.216 Sum_probs=15.9
Q ss_pred hhHHHHHHHHHHHHHHHhhhh
Q 006561 347 ASEMIRREYDSKCRILRQLES 367 (640)
Q Consensus 347 a~E~lRi~YeKKc~~Lr~qd~ 367 (640)
.-++.|..|+++|+.+.....
T Consensus 158 ~l~KaKk~Y~~~c~e~e~a~~ 178 (350)
T 3aco_A 158 EVEAAKKAHHAACKEEKLAIS 178 (350)
T ss_dssp HHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456778899999988766543
No 10
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=49.53 E-value=1.4e+02 Score=31.40 Aligned_cols=69 Identities=16% Similarity=0.139 Sum_probs=37.7
Q ss_pred HhhHHHHHHHHHHHHHHHhhhhcCCCc---hhhHhHHHHHHHHhh-------HHHHHHHHHHHHHHHhhhhhcc---chh
Q 006561 346 KASEMIRREYDSKCRILRQLESKGVSS---HKIDKTRAVVKDLHS-------RIKVAIHRIDSISKRIEELRDK---ELQ 412 (640)
Q Consensus 346 Ka~E~lRi~YeKKc~~Lr~qd~kGad~---~kIDKTRa~Vk~L~T-------rI~VaIqsVdsiS~~I~kLRDE---EL~ 412 (640)
+.-++.+..|++.|+.......+=.+. ..++|++.-...... .+..++++. ++.++. +.+
T Consensus 134 ~~lekaKk~Y~~~cke~e~A~~k~~~~~k~ke~eK~~~k~~k~~~~~~~a~neY~~~l~~~-------N~~~~~yy~~~l 206 (406)
T 4dyl_A 134 QDIEKLKSQYRALARDSAQAKRKYQEASKDKDRDKAKDKYVRSLWKLFAHHNRYVLGVRAA-------QLHHQHHHQLLL 206 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhh
Confidence 566788999999998887655442221 334555554444333 344443333 344443 677
Q ss_pred hHHHHHHHH
Q 006561 413 PQLEDLIEG 421 (640)
Q Consensus 413 PQL~ELI~G 421 (640)
|++++-+|.
T Consensus 207 p~~~d~lQ~ 215 (406)
T 4dyl_A 207 PGLLRSLQD 215 (406)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887765443
No 11
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=48.87 E-value=1.4e+02 Score=29.29 Aligned_cols=75 Identities=7% Similarity=0.164 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCCcccccCCCCCCCCCCCCCCchHHHHHHHHHHhhccCCh
Q 006561 461 ITIHLENELSSLSSSFTKWISAQKFYLQAINNWLVKCVSLPQKSSRRKRRVPAPPPLRNFGPPIYATCSVWLDLLDWLPS 540 (640)
Q Consensus 461 aT~qLE~El~~W~ssF~~wI~aQK~YV~aLngWL~~cl~~~~e~~~~~~~~~s~~P~r~~aPpIf~lC~~W~~aLdrLp~ 540 (640)
.-..+-.+|..| |..=...-++|.+.|..|-+++...-. ++ ...-|.+.++..|...+..+
T Consensus 18 ~g~~~~~el~~f---~keRa~iE~eYak~L~kLakk~~~~~~-----~~---------~~~~~~~t~~~~w~~~l~~~-- 78 (301)
T 2efk_A 18 WGLDLLDRYVKF---VKERTEVEQAYAKQLRSLVKKYLPKRP-----AK---------DDPESKFSQQQSFVQILQEV-- 78 (301)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHSCC---------------------CTTSHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhcccc-----cc---------ccccccchHHHHHHHHHHHH--
Confidence 334444444444 334456678999999999999863310 00 00112347888998887653
Q ss_pred HHHHHHHHHHHHHH
Q 006561 541 KELTDSIKSLASET 554 (640)
Q Consensus 541 k~v~~AIksFa~~v 554 (640)
+.+...-..|+..|
T Consensus 79 e~~a~~h~~~a~~L 92 (301)
T 2efk_A 79 NDFAGQRELVAENL 92 (301)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444555554
No 12
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=44.24 E-value=2.4e+02 Score=27.57 Aligned_cols=24 Identities=21% Similarity=0.426 Sum_probs=17.6
Q ss_pred HHhhHHHHHHHHHHHHHHHhhhhc
Q 006561 345 VKASEMIRREYDSKCRILRQLESK 368 (640)
Q Consensus 345 VKa~E~lRi~YeKKc~~Lr~qd~k 368 (640)
++.-++.|..|++.|+.+.....+
T Consensus 129 ~~~l~KaKk~Y~~~~~e~e~a~~~ 152 (301)
T 2efk_A 129 FKQLENSKRKFERDCREAEKAAQT 152 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345568899999999888765443
No 13
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=42.74 E-value=2.3e+02 Score=30.42 Aligned_cols=78 Identities=10% Similarity=0.153 Sum_probs=42.9
Q ss_pred HHhhHHHHHHHHHHHHHHHhhhh--------cCCCchhhHhHHHHHHHHhhHHHHHHHHHHHHHHHhhhhh--ccchhhH
Q 006561 345 VKASEMIRREYDSKCRILRQLES--------KGVSSHKIDKTRAVVKDLHSRIKVAIHRIDSISKRIEELR--DKELQPQ 414 (640)
Q Consensus 345 VKa~E~lRi~YeKKc~~Lr~qd~--------kGad~~kIDKTRa~Vk~L~TrI~VaIqsVdsiS~~I~kLR--DEEL~PQ 414 (640)
.+.-++.|..|+++|+..+.... .+.....++|.+.-+.+...++.-+-.--.......++.| =++.+|+
T Consensus 149 ~~~l~KaKk~Y~~~cke~e~a~~~~~~a~~d~~~t~k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~y~~~~~~ 228 (486)
T 3haj_A 149 LKEVEAAKKAHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYMENMEQ 228 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567889999999987766532 2333456666666666655443333222222222233333 2356666
Q ss_pred HHHHHHHH
Q 006561 415 LEDLIEGL 422 (640)
Q Consensus 415 L~ELI~GL 422 (640)
+++-+|-|
T Consensus 229 ~~~~lQ~l 236 (486)
T 3haj_A 229 VFEQCQQF 236 (486)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666654
No 14
>3mxz_A Tubulin-specific chaperone A; helix bundle; 1.60A {Arabidopsis thaliana}
Probab=42.18 E-value=1.9e+02 Score=25.97 Aligned_cols=42 Identities=19% Similarity=0.375 Sum_probs=28.7
Q ss_pred HHHHhhhhcCCCchhh-------HhHHHHHHHHhhHHHHHHHHHHHHHH
Q 006561 360 RILRQLESKGVSSHKI-------DKTRAVVKDLHSRIKVAIHRIDSISK 401 (640)
Q Consensus 360 ~~Lr~qd~kGad~~kI-------DKTRa~Vk~L~TrI~VaIqsVdsiS~ 401 (640)
.++.++...|.|...| +.|+..|-+++.||.-++..+..+-.
T Consensus 36 ~kiekmk~e~~dey~iKkq~evL~Et~~mipd~~~RL~~a~~~L~~~l~ 84 (116)
T 3mxz_A 36 AKTADMKDKGADPYDLKQQENVLGESRMMIPDCHKRLESALADLKSTLA 84 (116)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3334444457766555 67888899999999888777666443
No 15
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=40.58 E-value=1.3e+02 Score=29.84 Aligned_cols=72 Identities=17% Similarity=0.232 Sum_probs=46.0
Q ss_pred HhhHHHHHHHHHHHHHHHhhhh-----cC---CCc-------hhhHhHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhccc
Q 006561 346 KASEMIRREYDSKCRILRQLES-----KG---VSS-------HKIDKTRAVVKDLHSRIKVAIHRIDSISKRIEELRDKE 410 (640)
Q Consensus 346 Ka~E~lRi~YeKKc~~Lr~qd~-----kG---ad~-------~kIDKTRa~Vk~L~TrI~VaIqsVdsiS~~I~kLRDEE 410 (640)
+.-++.|..|+++|+.+..... +| ... .+++|++..+......+..+++..+.+-..- ++
T Consensus 157 ~~l~KaK~~Y~~~c~e~e~a~~~~~~~~~d~~~~~k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~~-----~~ 231 (312)
T 3abh_A 157 KEVEAAKKAHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQY-----ME 231 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHHHHHHTCTTCCSHHHHGGGTTTTSHHHHHHHHHHHHHHHHHHHHHHHHHH-----HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-----HH
Confidence 4457889999999988766543 11 111 2345566666677777888888777763332 35
Q ss_pred hhhHHHHHHHHH
Q 006561 411 LQPQLEDLIEGL 422 (640)
Q Consensus 411 L~PQL~ELI~GL 422 (640)
.+|++++-+|.|
T Consensus 232 ~~~~~~~~~Q~l 243 (312)
T 3abh_A 232 NMEQVFEQCQQF 243 (312)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 677777766654
No 16
>4aj5_1 SKA3, spindle and kinetochore-associated protein 3; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=38.01 E-value=57 Score=29.05 Aligned_cols=88 Identities=26% Similarity=0.179 Sum_probs=62.8
Q ss_pred CcccccccchHhHHHHHHHHHHHHHH-HHH--hhHHHHHHHHHHHHHHHhhhhcCCCchhhHhHHHHHHHHhhHHHHHHH
Q 006561 318 DSIHMISSSHASTLDRLYAWERKLYD-EVK--ASEMIRREYDSKCRILRQLESKGVSSHKIDKTRAVVKDLHSRIKVAIH 394 (640)
Q Consensus 318 ee~~m~sgSHSSTLdKLYAWEKKLYd-EVK--a~E~lRi~YeKKc~~Lr~qd~kGad~~kIDKTRa~Vk~L~TrI~VaIq 394 (640)
.+||..-.++++|||+=.|+=+.=.+ |=- .+-.+|+.||=-|.- +.| ||.-...+||.|+.-..+..=|..+-=
T Consensus 5 ~~Ff~KLR~La~tLe~Eta~L~~al~~edsd~E~~~~rilhdl~seV-~~L--K~dv~~~L~k~~~e~qe~~~FIKa~kv 81 (101)
T 4aj5_1 5 RSFCGKLRSLASTLDCETARLQRALDGEESDFEDYPMRILYDLHSEV-QTL--KDDINILLDKARLENQEGIDFIKATKV 81 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHH-HHH--HHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 46777788999999998776433222 100 123688888877642 333 444557889999999888888888888
Q ss_pred HHHHHHHHhhhhhc
Q 006561 395 RIDSISKRIEELRD 408 (640)
Q Consensus 395 sVdsiS~~I~kLRD 408 (640)
-+..++.-|.+||.
T Consensus 82 L~~rns~DI~~ire 95 (101)
T 4aj5_1 82 LMEKNSMDIMKIRE 95 (101)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHH
Confidence 88888888988874
No 17
>2j9w_A VPS28, VPS28-PROV protein; NZF finger, HIV budding, protein transport; 1.30A {Xenopus laevis}
Probab=36.42 E-value=67 Score=28.53 Aligned_cols=78 Identities=23% Similarity=0.321 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhhhhhccchhhHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHhccCCCcccCCChhHHHHHHHHHHHHH
Q 006561 393 IHRIDSISKRIEELRDKELQPQLEDLIEGLSRMWE--VMFECHKLQFQVISVAYNNAHSKISIKSDSHRQITIHLENELS 470 (640)
Q Consensus 393 IqsVdsiS~~I~kLRDEEL~PQL~ELI~GL~rMWk--~MlECHq~Q~~ii~~a~~~~~~~~~~tse~hrqaT~qLE~El~ 470 (640)
|..+|++.-.|-- =++|+|-|.+|+.+|.||=. .=.+.+.+-.+-+..++.- ...-+.+-+--||....||..-.
T Consensus 18 IT~mDaLKLn~~a--~DqLhPlL~dL~~sl~r~~~lp~dfegk~kv~~Wl~~Ln~M-~AsdeL~e~q~RqllfDle~aY~ 94 (102)
T 2j9w_A 18 ITVMDKLRLEIRA--MDEIQPDLRELMETMNRMSHLPPDFEGREKVSQWLQKLSSM-SASDELDDSQVRQMLFDLESAYN 94 (102)
T ss_dssp HHHHHHHHTTCCB--HHHHHHHHHHHHHHHHHCTTSCTTCHHHHHHHHHHHHHHTS-CTTCBCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcchh--HHhhhhHHHHHHHhcccCCCCCCCCccHHHHHHHHHHHcCC-cccccCCHHHHHHHHHHHHHHHH
Confidence 4555555443333 36999999999999999921 1123343333333333211 11223444445666666665544
Q ss_pred HHH
Q 006561 471 SLS 473 (640)
Q Consensus 471 ~W~ 473 (640)
.++
T Consensus 95 ~F~ 97 (102)
T 2j9w_A 95 AFN 97 (102)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 18
>2j9u_A VPS28, vacuolar protein sorting-associated protein 28; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: a.24.28.1 PDB: 2j9v_A 2g3k_A
Probab=35.02 E-value=35 Score=30.05 Aligned_cols=78 Identities=18% Similarity=0.220 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhhhhhccchhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCcccCCChhHHHHHHHHHHHHHHH
Q 006561 393 IHRIDSISKRIEELRDKELQPQLEDLIEGLSRMWEVMFECHKLQFQVISVAYNNAHSKISIKSDSHRQITIHLENELSSL 472 (640)
Q Consensus 393 IqsVdsiS~~I~kLRDEEL~PQL~ELI~GL~rMWk~MlECHq~Q~~ii~~a~~~~~~~~~~tse~hrqaT~qLE~El~~W 472 (640)
|..+|++.-.|-- =++|+|-|.+|+.+|.||=..=.|.+.+-.+-+..++.- ...-+.+-+--||....||..-..+
T Consensus 15 IT~mDaLKL~~~a--~DqLhP~L~dL~~sl~r~~~~dfegk~kv~~Wl~~Ln~M-~AsdeL~e~q~RqllfDle~aY~~F 91 (96)
T 2j9u_A 15 ITVMDALKLNYNA--KDQLHPLLAELLISINRVTRDDFENRSKLIDWIVRINKL-SIGDTLTETQIRELLFDLELAYKSF 91 (96)
T ss_dssp HHHHHHHHTTCCB--HHHHHHHHHHHHHHHHHHCCCCCTTHHHHHHHHHHHHTS-CTTCBCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcchh--HHhhCchHHHHHHHccCCCCCCCchHHHHHHHHHHHcCC-cccccCCHHHHHHHHHHHHHHHHHH
Confidence 4455554433322 369999999999999998322223333333333333211 1122334444455555555554443
Q ss_pred H
Q 006561 473 S 473 (640)
Q Consensus 473 ~ 473 (640)
+
T Consensus 92 ~ 92 (96)
T 2j9u_A 92 Y 92 (96)
T ss_dssp H
T ss_pred H
Confidence 3
No 19
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=34.99 E-value=1e+02 Score=32.50 Aligned_cols=132 Identities=11% Similarity=0.167 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCCcccccCCCCCCCCCCCCCCchHHHHHHHHHHhhccCC
Q 006561 460 QITIHLENELSSLSSSFTKWISAQKFYLQAINNWLVKCVSLPQKSSRRKRRVPAPPPLRNFGPPIYATCSVWLDLLDWLP 539 (640)
Q Consensus 460 qaT~qLE~El~~W~ssF~~wI~aQK~YV~aLngWL~~cl~~~~e~~~~~~~~~s~~P~r~~aPpIf~lC~~W~~aLdrLp 539 (640)
+.-.+|-.+|..| |..=...-++|-+.|..|-++...-.. . +..++..++..|..-+..+
T Consensus 22 ~~g~~lledl~~F---~reRA~IE~eYAk~L~kLakk~~~k~~-----~-----------~~~~~~tl~~aW~~ll~et- 81 (406)
T 4dyl_A 22 EAELRLLEGMRKW---MAQRVKSDREYAGLLHHMSLQDSGGQS-----R-----------AISPDSPISQSWAEITSQT- 81 (406)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHC----------------------------CCSHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhcccc-----c-----------CCCCCChHHHHHHHHHHHH-
Confidence 4445555555544 344567789999999999988653110 0 0012234668888777653
Q ss_pred hHHHHHHHHHHHHHHhhHhHhh-----hh-hhcCCCChhhhhhhccccccccccchhhhhccHHHHH-HHHhhhhHHHHH
Q 006561 540 SKELTDSIKSLASETSHFLPRQ-----EK-NQGKSGSETAVNLLADDASEDWISGFDRFRSSLVGFL-GQLNNFSENSVQ 612 (640)
Q Consensus 540 ~k~v~~AIksFa~~v~~l~~qQ-----e~-~~~kk~~~~~~~~~~~~~~~~~~~~~~~Lq~~L~~~l-~aL~~Fs~~S~k 612 (640)
+.+......|+..+..-+... .+ .+.+|.. ......++..|.+.+ ..|++ +.+
T Consensus 82 -e~~a~~H~~lae~L~~~v~~~l~~~~ke~~~~rK~~---------------~~~~~klqk~~~k~~~~~lek----aKk 141 (406)
T 4dyl_A 82 -EGLSRLLRQHAEDLNSGPLSKLSLLIRERQQLRKTY---------------SEQWQQLQQELTKTHSQDIEK----LKS 141 (406)
T ss_dssp -HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHTHHHHH----HHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHH----HHH
Confidence 445555555554443332211 00 0101000 012234666666666 56654 566
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 006561 613 MYADLKKAIQDAKIKYDEL 631 (640)
Q Consensus 613 ~YeeL~~~~Eeak~~y~~~ 631 (640)
.|+...+.++.|+.+|.+.
T Consensus 142 ~Y~~~cke~e~A~~k~~~~ 160 (406)
T 4dyl_A 142 QYRALARDSAQAKRKYQEA 160 (406)
T ss_dssp HHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 7888877777777777653
No 20
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=34.78 E-value=23 Score=28.76 Aligned_cols=33 Identities=27% Similarity=0.455 Sum_probs=25.8
Q ss_pred HHHHHHHHHhh----------HHHHHHHHHHHHHHHhhhhcCC
Q 006561 338 ERKLYDEVKAS----------EMIRREYDSKCRILRQLESKGV 370 (640)
Q Consensus 338 EKKLYdEVKa~----------E~lRi~YeKKc~~Lr~qd~kGa 370 (640)
|.+||+++++. ++.++.=|.=+..||+|+.||.
T Consensus 12 e~~lL~yIr~sGGildI~~~a~kygV~kdeV~~~LrrLe~KGL 54 (59)
T 2xvc_A 12 ERELLDYIVNNGGFLDIEHFSKVYGVEKQEVVKLLEALKNKGL 54 (59)
T ss_dssp HHHHHHHHHHTTSEEEHHHHHHHHCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHcCCEEeHHHHHHHhCCCHHHHHHHHHHHHHCCC
Confidence 88999999954 3444555677899999999995
No 21
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=34.28 E-value=3.7e+02 Score=26.91 Aligned_cols=73 Identities=16% Similarity=0.191 Sum_probs=37.9
Q ss_pred HHhhHHHHHHHHHHHHHHHhhh-----hcC---CCchhhHhHHHHHHHH-------hhHHHHHHHHHHHHHHHhhhhhcc
Q 006561 345 VKASEMIRREYDSKCRILRQLE-----SKG---VSSHKIDKTRAVVKDL-------HSRIKVAIHRIDSISKRIEELRDK 409 (640)
Q Consensus 345 VKa~E~lRi~YeKKc~~Lr~qd-----~kG---ad~~kIDKTRa~Vk~L-------~TrI~VaIqsVdsiS~~I~kLRDE 409 (640)
++.-++.|..|+.+|+.+.... .++ .....++|.+.-+.++ ...+..+++..+.+- -+=+
T Consensus 147 ~~~l~KaKk~Y~~~c~e~e~a~~~~~~~~~~~~~s~k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~-----~~~~ 221 (337)
T 2x3v_A 147 MKELEAAKKAYHLACKEERLAMTREMNSKTEQSVTPEQQKKLVDKVDKCRQDVQKTQEKYEKVLEDVGKTT-----PQYM 221 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhccccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----HHHH
Confidence 3456788999999998865332 111 2223445544444443 334444444444331 1223
Q ss_pred chhhHHHHHHHHH
Q 006561 410 ELQPQLEDLIEGL 422 (640)
Q Consensus 410 EL~PQL~ELI~GL 422 (640)
+.+|++++.+|.|
T Consensus 222 ~~~~~~~~~~Q~l 234 (337)
T 2x3v_A 222 EGMEQVFEQCQQF 234 (337)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4566666666553
No 22
>3caz_A BAR protein; thermo-acidophilic RED ALGA, protein structure initiative, PSI, center for eukaryotic structural genomics, signaling protein; 3.34A {Galdieria sulphuraria}
Probab=32.23 E-value=3.8e+02 Score=26.50 Aligned_cols=81 Identities=25% Similarity=0.398 Sum_probs=58.5
Q ss_pred hHhHHHHHHHHHHHHHHHH-------HhhHHHHHHHHHHHHHHHhhhhcCCCchhhHhHHHHHHHHhhHHHHHHHHHHHH
Q 006561 327 HASTLDRLYAWERKLYDEV-------KASEMIRREYDSKCRILRQLESKGVSSHKIDKTRAVVKDLHSRIKVAIHRIDSI 399 (640)
Q Consensus 327 HSSTLdKLYAWEKKLYdEV-------Ka~E~lRi~YeKKc~~Lr~qd~kGad~~kIDKTRa~Vk~L~TrI~VaIqsVdsi 399 (640)
|.--+-||+.==.|.++++ +.-..+|..||----.|..|+.+..++.+|...+.-+++-.|-+.-
T Consensus 96 hgreiarllekiqkyfQ~IEtlK~ql~nf~e~RLiYDHYKlKvdELEK~~KdSeKI~RNQsKLssAEtaYkq-------- 167 (294)
T 3caz_A 96 HGREIARLLEKIQKYRQEIEEIKKEYKETDKYRERYDHYKVKLDNLEKKNKDQERIERNQQKFKDAEAAYSS-------- 167 (294)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH--------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHHhccchHHHHHHhHHHhhhHHHHHHH--------
Confidence 5556667766556666554 5778899999998888999999889988888877666665554431
Q ss_pred HHHhhhhhccchhhHHHHHHHHHHHhHHHH
Q 006561 400 SKRIEELRDKELQPQLEDLIEGLSRMWEVM 429 (640)
Q Consensus 400 S~~I~kLRDEEL~PQL~ELI~GL~rMWk~M 429 (640)
-+.+||+.|-..|+.-
T Consensus 168 --------------vcsDiInkMnkll~n~ 183 (294)
T 3caz_A 168 --------------VCADLIQKMETVWKKH 183 (294)
T ss_dssp --------------HHHHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHHHHHHHH
Confidence 2456777777777754
No 23
>3rq9_A TSI2, type VI secretion immunity protein; antitoxin, TSE2-BI protein; 1.00A {Pseudomonas aeruginosa} PDB: 3vpv_A
Probab=32.08 E-value=54 Score=27.87 Aligned_cols=34 Identities=21% Similarity=0.381 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHhhhhhccchhhH---HHHHHHHH
Q 006561 389 IKVAIHRIDSISKRIEELRDKELQPQ---LEDLIEGL 422 (640)
Q Consensus 389 I~VaIqsVdsiS~~I~kLRDEEL~PQ---L~ELI~GL 422 (640)
++||||+|++-.+++..+-|++--|- |..|+-|+
T Consensus 8 LmvAIQcVaAei~~Lda~l~e~~ppna~elEqLLV~f 44 (85)
T 3rq9_A 8 LMVAIQCVAARTRELDAQLQNDDPQNAAELEQLLVGY 44 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred ehhhHHHHHHHHHHHHhccccccCCCcchhHHHHhhh
Confidence 57899999999999999999999998 55555554
No 24
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=29.76 E-value=2.5e+02 Score=27.11 Aligned_cols=68 Identities=12% Similarity=0.109 Sum_probs=43.1
Q ss_pred hhHHHHHHHHHHHHHHHhhhhcCCCchhhHhHHHHHHHHhhHHHHHHHHHHHHHHHhhhhh-ccchhhHHHH
Q 006561 347 ASEMIRREYDSKCRILRQLESKGVSSHKIDKTRAVVKDLHSRIKVAIHRIDSISKRIEELR-DKELQPQLED 417 (640)
Q Consensus 347 a~E~lRi~YeKKc~~Lr~qd~kGad~~kIDKTRa~Vk~L~TrI~VaIqsVdsiS~~I~kLR-DEEL~PQL~E 417 (640)
+..+++-.|+||-++...+-..-. +...-++ -.+-|.+|=.+--...+.+-.++.+|. |.+-|+.|+.
T Consensus 54 ~~~~i~~~~ek~~kq~e~~~~i~~-S~~~~~a--R~~vL~ar~e~i~~v~~~a~~~L~~~~~d~~~Y~~lL~ 122 (233)
T 4efa_E 54 ETNNIDGNFKSKLKKAMLSQQITK-STIANKM--RLKVLSAREQSLDGIFEETKEKLSGIANNRDEYKPILQ 122 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 445677788888777765543221 1122222 234577777766777788888888884 7788887754
No 25
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}
Probab=29.01 E-value=2.6e+02 Score=27.45 Aligned_cols=73 Identities=18% Similarity=0.270 Sum_probs=41.7
Q ss_pred HhhHHHHHHHHHHHHHHHhhhhc--------CCCch-------hhHhHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhccc
Q 006561 346 KASEMIRREYDSKCRILRQLESK--------GVSSH-------KIDKTRAVVKDLHSRIKVAIHRIDSISKRIEELRDKE 410 (640)
Q Consensus 346 Ka~E~lRi~YeKKc~~Lr~qd~k--------Gad~~-------kIDKTRa~Vk~L~TrI~VaIqsVdsiS~~I~kLRDEE 410 (640)
+.-++.|..|++.|+..+....+ +.... +++++...+......+..+++..+.+-.. =++
T Consensus 135 ~~l~kaKk~Y~~~c~e~~~a~~~~~~a~~~~~~s~k~~~K~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~-----~~~ 209 (290)
T 3i2w_A 135 AKVEKAKADYHSACKTERSATNQERNANADSSLSPDQVKKMHDRVQKTKDQVQKCREKYEQAIAEITKYNSV-----YIE 209 (290)
T ss_dssp HHHHHHHHHHHHHHHTTTSCC--------------------CTTSSTTTTHHHHHHHHHHHHHHHHHHHHHH-----HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-----HHH
Confidence 34567888999999864433211 11111 24455556666677777777777665332 256
Q ss_pred hhhHHHHHHHHHH
Q 006561 411 LQPQLEDLIEGLS 423 (640)
Q Consensus 411 L~PQL~ELI~GL~ 423 (640)
.+|++++-+|.|.
T Consensus 210 ~~p~~~~~~Q~le 222 (290)
T 3i2w_A 210 DMTSVFEKCQTFE 222 (290)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6777776666543
No 26
>3stq_A TSI2, putative uncharacterized protein; coiled-coil, toxin-antitoxin system, TSI2-TSE2, T6SS, toxin toxin; 2.28A {Pseudomonas aeruginosa}
Probab=28.14 E-value=63 Score=28.16 Aligned_cols=34 Identities=21% Similarity=0.381 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHhhhhhccchhhH---HHHHHHHH
Q 006561 389 IKVAIHRIDSISKRIEELRDKELQPQ---LEDLIEGL 422 (640)
Q Consensus 389 I~VaIqsVdsiS~~I~kLRDEEL~PQ---L~ELI~GL 422 (640)
++||||+|++-.+++..+-|++--|- |..|+-|+
T Consensus 33 LmvAIQcVaAei~~Lda~l~e~~ppna~elEqLLV~f 69 (102)
T 3stq_A 33 LMVAIQCVAARTRELDAQLQNDDPQNAAELEQLLVGY 69 (102)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHHHHHhccccccCCCcchhHHHhhhh
Confidence 47899999999999999999999998 55555553
No 27
>1h7c_A Tubulin-specific chaperone A; protein folding, cofactor A; 1.8A {Homo sapiens} SCOP: a.7.5.1
Probab=25.18 E-value=3.5e+02 Score=23.82 Aligned_cols=37 Identities=19% Similarity=0.391 Sum_probs=26.3
Q ss_pred hhHhHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhccc
Q 006561 374 KIDKTRAVVKDLHSRIKVAIHRIDSISKRIEELRDKE 410 (640)
Q Consensus 374 kIDKTRa~Vk~L~TrI~VaIqsVdsiS~~I~kLRDEE 410 (640)
.++.|+..|-++..||.-++..+..+-..=..+.+.|
T Consensus 56 vl~Et~~mipd~~~Rl~~a~~~L~~~l~~e~~~~~~e 92 (108)
T 1h7c_A 56 ILQESRMMIPDCQRRLEAAYLDLQRILENEKDLEEAE 92 (108)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHHCGGGTTSH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHhcccCCCcH
Confidence 4578888899999999999888887654323343333
No 28
>1qsd_A Protein (beta-tubulin binding post-chaperonin cofactor); four-helix-bundle, chaperone; 2.20A {Saccharomyces cerevisiae} SCOP: a.7.5.1
Probab=22.12 E-value=4.1e+02 Score=23.42 Aligned_cols=60 Identities=10% Similarity=0.155 Sum_probs=37.8
Q ss_pred HHHHHHHHHhhhhcCC-Cch-------hhHhHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhccchhhHHHH
Q 006561 355 YDSKCRILRQLESKGV-SSH-------KIDKTRAVVKDLHSRIKVAIHRIDSISKRIEELRDKELQPQLED 417 (640)
Q Consensus 355 YeKKc~~Lr~qd~kGa-d~~-------kIDKTRa~Vk~L~TrI~VaIqsVdsiS~~I~kLRDEEL~PQL~E 417 (640)
.+.-..++.++...|+ |.. .++.|+..|-+++.||.-++..+..+- ..+.+.|-|-.=-+
T Consensus 27 ~~~q~~riek~k~~~~~dey~iKkq~evl~Et~~mipd~~~Rl~~a~~~L~~~l---~~~~~~ee~~~Ake 94 (106)
T 1qsd_A 27 LKDQEAHVAKLKEDKSVDPYDLKKQEEVLDDTKRLLPTLYEKIREFKEDLEQFL---KTYQGTEDVSDARS 94 (106)
T ss_dssp HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HTCCSSSCCHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH---HhccCcHHHHHHHH
Confidence 3333344444444455 544 457889999999999999888888766 45555544433333
Done!