Query 006562
Match_columns 640
No_of_seqs 971 out of 3645
Neff 10.9
Searched_HMMs 46136
Date Thu Mar 28 11:13:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006562.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006562hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 100.0 2.2E-41 4.8E-46 325.7 32.4 267 369-635 240-506 (966)
2 KOG0547 Translocase of outer m 100.0 5.6E-41 1.2E-45 315.0 32.7 436 42-620 121-572 (606)
3 KOG4626 O-linked N-acetylgluco 100.0 9.4E-41 2E-45 321.4 30.3 271 369-639 206-476 (966)
4 TIGR00990 3a0801s09 mitochondr 100.0 6.4E-38 1.4E-42 336.8 48.0 437 41-621 132-578 (615)
5 TIGR02917 PEP_TPR_lipo putativ 100.0 4.3E-32 9.4E-37 310.0 51.3 450 45-639 440-891 (899)
6 TIGR02917 PEP_TPR_lipo putativ 100.0 2.2E-31 4.7E-36 304.2 50.7 450 45-639 406-857 (899)
7 KOG0548 Molecular co-chaperone 100.0 4.7E-32 1E-36 259.5 37.2 460 39-632 5-473 (539)
8 PRK11447 cellulose synthase su 100.0 2.2E-30 4.9E-35 296.1 50.4 270 370-639 374-731 (1157)
9 PRK11447 cellulose synthase su 100.0 2.5E-30 5.5E-35 295.7 49.3 253 387-639 357-691 (1157)
10 PRK15174 Vi polysaccharide exp 100.0 1.3E-29 2.8E-34 271.3 45.1 329 45-584 51-385 (656)
11 TIGR00990 3a0801s09 mitochondr 100.0 6.1E-29 1.3E-33 267.4 50.1 245 365-617 349-600 (615)
12 PRK15174 Vi polysaccharide exp 100.0 1.1E-28 2.5E-33 264.0 41.8 383 42-635 11-407 (656)
13 KOG0547 Translocase of outer m 100.0 1.5E-28 3.3E-33 231.6 33.9 257 383-639 278-557 (606)
14 PRK09782 bacteriophage N4 rece 100.0 3.4E-28 7.4E-33 265.3 37.1 266 370-639 464-731 (987)
15 KOG2002 TPR-containing nuclear 100.0 1E-26 2.2E-31 236.9 39.9 459 45-633 279-764 (1018)
16 KOG2002 TPR-containing nuclear 100.0 8.4E-26 1.8E-30 230.2 40.4 261 377-638 303-583 (1018)
17 PRK10049 pgaA outer membrane p 100.0 9.2E-26 2E-30 246.9 40.5 226 398-623 213-465 (765)
18 KOG1126 DNA-binding cell divis 100.0 1.1E-26 2.3E-31 228.6 26.4 297 343-639 314-611 (638)
19 PRK10049 pgaA outer membrane p 100.0 7.5E-25 1.6E-29 239.8 43.1 384 40-589 52-465 (765)
20 KOG0624 dsRNA-activated protei 100.0 8.9E-25 1.9E-29 197.3 32.3 322 41-591 42-381 (504)
21 KOG1126 DNA-binding cell divis 99.9 2.8E-25 6E-30 218.6 27.1 217 404-620 410-626 (638)
22 KOG2003 TPR repeat-containing 99.9 1.1E-24 2.3E-29 203.7 28.3 240 395-634 470-709 (840)
23 PRK09782 bacteriophage N4 rece 99.9 1.1E-23 2.4E-28 230.1 40.9 252 384-638 512-763 (987)
24 KOG1173 Anaphase-promoting com 99.9 8.8E-24 1.9E-28 203.6 33.9 261 370-630 267-534 (611)
25 PRK11788 tetratricopeptide rep 99.9 4.8E-23 1E-27 210.9 38.6 231 382-613 108-346 (389)
26 KOG1155 Anaphase-promoting com 99.9 1.6E-22 3.6E-27 190.0 37.4 263 376-638 257-526 (559)
27 KOG0624 dsRNA-activated protei 99.9 5.9E-22 1.3E-26 179.2 31.9 244 384-627 109-383 (504)
28 PRK11788 tetratricopeptide rep 99.9 2.5E-22 5.4E-27 205.6 31.8 273 366-639 54-338 (389)
29 KOG2003 TPR repeat-containing 99.9 4.9E-22 1.1E-26 186.0 29.9 263 377-639 415-680 (840)
30 PRK14574 hmsH outer membrane p 99.9 7.9E-20 1.7E-24 196.1 47.0 424 38-638 36-503 (822)
31 KOG1155 Anaphase-promoting com 99.9 2.1E-20 4.6E-25 176.0 37.2 262 369-630 284-552 (559)
32 KOG1173 Anaphase-promoting com 99.9 1.5E-20 3.4E-25 181.4 34.1 259 381-639 244-509 (611)
33 KOG2076 RNA polymerase III tra 99.9 3E-20 6.5E-25 188.9 35.6 66 72-137 142-207 (895)
34 PF13429 TPR_15: Tetratricopep 99.9 2.7E-23 5.8E-28 201.3 13.0 255 383-639 10-268 (280)
35 KOG1129 TPR repeat-containing 99.9 2.8E-20 6.1E-25 167.3 28.3 246 382-628 224-472 (478)
36 PRK12370 invasion protein regu 99.9 2.7E-20 5.7E-25 196.6 32.9 256 381-638 258-526 (553)
37 KOG2076 RNA polymerase III tra 99.9 7.2E-19 1.6E-23 179.0 38.8 349 45-637 148-544 (895)
38 KOG4162 Predicted calmodulin-b 99.9 9.3E-19 2E-23 175.2 37.1 273 366-638 463-773 (799)
39 KOG0495 HAT repeat protein [RN 99.9 2E-18 4.4E-23 169.0 38.5 266 368-634 571-866 (913)
40 PRK14574 hmsH outer membrane p 99.9 2.2E-18 4.7E-23 185.1 41.5 226 397-622 267-521 (822)
41 KOG0550 Molecular chaperone (D 99.9 4.5E-20 9.7E-25 171.5 23.4 288 36-549 49-353 (486)
42 KOG0548 Molecular co-chaperone 99.9 3.5E-18 7.6E-23 164.8 36.4 233 369-610 246-485 (539)
43 PRK11189 lipoprotein NlpI; Pro 99.9 2.2E-19 4.8E-24 173.8 27.7 236 394-634 39-286 (296)
44 KOG1125 TPR repeat-containing 99.9 3.5E-20 7.5E-25 180.0 20.9 252 385-636 289-559 (579)
45 KOG1174 Anaphase-promoting com 99.9 1.8E-18 3.9E-23 160.6 30.3 264 369-633 220-519 (564)
46 PRK12370 invasion protein regu 99.9 8.8E-19 1.9E-23 185.1 31.8 249 364-615 278-536 (553)
47 TIGR00540 hemY_coli hemY prote 99.8 8.7E-18 1.9E-22 171.1 37.0 228 386-614 158-399 (409)
48 COG3063 PilF Tfp pilus assembl 99.8 1.8E-18 4E-23 149.1 25.3 207 381-587 35-243 (250)
49 PF13429 TPR_15: Tetratricopep 99.8 1.4E-20 3E-25 182.4 14.0 236 377-614 40-277 (280)
50 COG3063 PilF Tfp pilus assembl 99.8 1.4E-18 3E-23 149.8 24.4 209 415-623 35-245 (250)
51 PRK11189 lipoprotein NlpI; Pro 99.8 2.1E-18 4.6E-23 167.0 27.3 219 377-599 60-285 (296)
52 TIGR02521 type_IV_pilW type IV 99.8 3.6E-18 7.8E-23 161.6 28.4 199 381-579 31-231 (234)
53 KOG1174 Anaphase-promoting com 99.8 3.8E-17 8.3E-22 151.9 33.6 218 381-599 300-519 (564)
54 TIGR02521 type_IV_pilW type IV 99.8 3E-18 6.6E-23 162.1 27.5 203 414-616 30-234 (234)
55 KOG4162 Predicted calmodulin-b 99.8 1.1E-16 2.3E-21 160.6 38.4 242 397-638 460-737 (799)
56 TIGR00540 hemY_coli hemY prote 99.8 1.1E-17 2.4E-22 170.4 32.2 269 370-639 107-390 (409)
57 KOG0495 HAT repeat protein [RN 99.8 1.8E-16 3.9E-21 155.6 38.6 257 370-627 539-795 (913)
58 KOG1129 TPR repeat-containing 99.8 1.1E-18 2.4E-23 157.2 19.9 248 390-638 188-448 (478)
59 PLN03081 pentatricopeptide (PP 99.8 3.7E-17 8.1E-22 179.0 36.3 257 378-639 287-548 (697)
60 KOG3785 Uncharacterized conser 99.8 1.2E-16 2.6E-21 145.7 29.9 252 384-638 154-447 (557)
61 PLN02789 farnesyltranstransfer 99.8 3.9E-17 8.4E-22 157.2 28.4 237 389-625 45-313 (320)
62 PRK10747 putative protoheme IX 99.8 4E-16 8.7E-21 158.0 37.1 226 386-615 158-391 (398)
63 PRK10747 putative protoheme IX 99.8 1.8E-16 3.9E-21 160.5 32.8 253 383-639 120-381 (398)
64 PLN03218 maturation of RBCL 1; 99.8 1.9E-14 4E-19 159.4 49.0 233 379-614 540-783 (1060)
65 COG2956 Predicted N-acetylgluc 99.8 2.7E-16 5.9E-21 142.0 27.2 231 386-617 40-281 (389)
66 KOG1125 TPR repeat-containing 99.8 3.2E-18 7E-23 166.4 15.8 221 419-639 289-518 (579)
67 KOG0553 TPR repeat-containing 99.8 1.6E-18 3.4E-23 156.1 12.3 104 34-137 79-183 (304)
68 PLN03077 Protein ECB2; Provisi 99.8 1.3E-15 2.8E-20 171.0 38.9 253 380-639 454-711 (857)
69 PLN03218 maturation of RBCL 1; 99.8 2.9E-14 6.3E-19 157.9 48.5 246 380-629 578-834 (1060)
70 KOG1127 TPR repeat-containing 99.8 5.9E-17 1.3E-21 166.0 24.4 248 384-631 402-676 (1238)
71 PLN02789 farnesyltranstransfer 99.8 1E-16 2.3E-21 154.2 24.4 222 394-632 33-268 (320)
72 KOG1127 TPR repeat-containing 99.8 7.7E-17 1.7E-21 165.1 24.3 267 370-638 585-903 (1238)
73 KOG1840 Kinesin light chain [C 99.8 6.3E-16 1.4E-20 155.1 28.5 243 371-613 189-478 (508)
74 KOG0550 Molecular chaperone (D 99.8 2.1E-17 4.6E-22 153.9 15.1 262 364-626 66-361 (486)
75 KOG1156 N-terminal acetyltrans 99.7 1.6E-14 3.6E-19 142.4 35.8 386 43-639 14-459 (700)
76 COG2956 Predicted N-acetylgluc 99.7 1.1E-14 2.4E-19 131.7 29.3 247 370-618 58-315 (389)
77 PLN03081 pentatricopeptide (PP 99.7 1.2E-14 2.7E-19 159.2 35.8 391 39-614 161-557 (697)
78 KOG1840 Kinesin light chain [C 99.7 6.8E-16 1.5E-20 154.9 23.2 230 410-639 194-470 (508)
79 KOG1915 Cell cycle control pro 99.7 4.9E-13 1.1E-17 127.0 39.6 451 47-614 84-585 (677)
80 PLN03077 Protein ECB2; Provisi 99.7 5.7E-14 1.2E-18 157.8 38.9 250 379-638 422-676 (857)
81 KOG1156 N-terminal acetyltrans 99.7 1.4E-14 3.1E-19 142.8 24.5 250 381-630 7-264 (700)
82 KOG2376 Signal recognition par 99.7 2.1E-12 4.6E-17 126.3 38.2 253 380-632 174-505 (652)
83 TIGR03302 OM_YfiO outer membra 99.7 1.4E-14 3.1E-19 136.6 22.2 190 376-582 28-234 (235)
84 TIGR03302 OM_YfiO outer membra 99.7 3.3E-14 7.1E-19 134.1 23.8 189 411-616 29-234 (235)
85 cd05804 StaR_like StaR_like; a 99.7 1.3E-13 2.8E-18 139.3 29.2 262 377-639 39-327 (355)
86 PRK15359 type III secretion sy 99.6 1.4E-14 3.1E-19 123.5 15.4 126 504-632 14-139 (144)
87 cd05804 StaR_like StaR_like; a 99.6 3.2E-13 7E-18 136.3 25.9 205 377-582 2-217 (355)
88 PRK15359 type III secretion sy 99.6 3.3E-14 7.2E-19 121.2 15.5 124 402-528 14-137 (144)
89 KOG4234 TPR repeat-containing 99.6 1.4E-14 3E-19 121.7 12.4 117 36-152 95-217 (271)
90 KOG3060 Uncharacterized conser 99.6 8.4E-13 1.8E-17 115.8 22.8 204 394-597 25-237 (289)
91 PF12569 NARP1: NMDA receptor- 99.6 8.1E-11 1.8E-15 120.3 40.2 133 381-513 194-335 (517)
92 COG5010 TadD Flp pilus assembl 99.6 7.5E-13 1.6E-17 117.6 20.4 176 400-576 52-227 (257)
93 PRK14720 transcript cleavage f 99.6 1.9E-12 4E-17 137.8 27.1 210 370-596 20-268 (906)
94 COG5010 TadD Flp pilus assembl 99.6 9.9E-13 2.1E-17 116.8 20.6 181 431-612 49-229 (257)
95 PF12569 NARP1: NMDA receptor- 99.6 1.3E-11 2.9E-16 126.0 31.7 259 381-639 4-325 (517)
96 PRK10370 formate-dependent nit 99.5 8E-13 1.7E-17 119.1 19.5 122 496-617 52-176 (198)
97 PRK10370 formate-dependent nit 99.5 1.3E-12 2.8E-17 117.7 20.7 123 428-550 52-177 (198)
98 COG3071 HemY Uncharacterized e 99.5 3.8E-11 8.3E-16 112.7 30.4 253 382-638 85-380 (400)
99 KOG3060 Uncharacterized conser 99.5 5.3E-12 1.1E-16 110.9 23.0 186 376-561 47-235 (289)
100 PRK14720 transcript cleavage f 99.5 1.2E-12 2.6E-17 139.3 22.5 206 409-631 25-269 (906)
101 KOG1915 Cell cycle control pro 99.5 3.4E-09 7.4E-14 101.4 42.2 79 56-134 59-138 (677)
102 KOG1130 Predicted G-alpha GTPa 99.5 9.4E-14 2E-18 129.5 11.5 254 386-639 22-335 (639)
103 KOG2376 Signal recognition par 99.5 3.3E-10 7.2E-15 111.3 35.7 225 414-638 174-477 (652)
104 KOG1128 Uncharacterized conser 99.5 1.2E-12 2.6E-17 131.2 19.0 223 377-614 394-616 (777)
105 KOG3785 Uncharacterized conser 99.5 8.5E-10 1.8E-14 101.6 33.8 382 42-610 28-453 (557)
106 PRK15179 Vi polysaccharide bio 99.5 2.1E-11 4.6E-16 129.3 25.3 151 436-586 73-223 (694)
107 TIGR02552 LcrH_SycD type III s 99.4 3.3E-12 7.1E-17 108.9 15.2 116 505-620 5-120 (135)
108 COG3071 HemY Uncharacterized e 99.4 4.1E-10 8.8E-15 105.9 29.4 241 370-614 107-390 (400)
109 TIGR02552 LcrH_SycD type III s 99.4 5.7E-12 1.2E-16 107.4 15.7 116 403-518 5-120 (135)
110 PRK15179 Vi polysaccharide bio 99.4 1.5E-11 3.3E-16 130.4 21.7 157 398-554 69-225 (694)
111 KOG0543 FKBP-type peptidyl-pro 99.4 4E-12 8.7E-17 120.2 14.7 122 32-153 204-341 (397)
112 KOG4648 Uncharacterized conser 99.4 1.2E-12 2.7E-17 119.3 10.8 104 40-143 101-205 (536)
113 PLN03088 SGT1, suppressor of 99.4 6.2E-12 1.3E-16 124.6 15.8 111 40-150 6-117 (356)
114 KOG0553 TPR repeat-containing 99.4 6.4E-12 1.4E-16 113.8 14.1 117 486-602 84-200 (304)
115 KOG1128 Uncharacterized conser 99.4 8.6E-12 1.9E-16 125.3 16.4 211 414-639 397-607 (777)
116 PF04733 Coatomer_E: Coatomer 99.4 6.2E-12 1.3E-16 119.9 13.4 235 379-621 33-272 (290)
117 COG4783 Putative Zn-dependent 99.3 5.4E-10 1.2E-14 108.0 24.8 153 412-581 303-455 (484)
118 KOG1130 Predicted G-alpha GTPa 99.3 1E-11 2.2E-16 116.2 12.3 256 381-636 55-372 (639)
119 PF04733 Coatomer_E: Coatomer 99.3 2.8E-11 6E-16 115.4 15.6 239 389-636 9-252 (290)
120 PRK04841 transcriptional regul 99.3 1.3E-08 2.7E-13 116.4 39.8 235 383-617 493-763 (903)
121 COG4783 Putative Zn-dependent 99.3 4.9E-10 1.1E-14 108.3 23.3 153 446-615 303-455 (484)
122 PRK15363 pathogenicity island 99.3 7.1E-11 1.5E-15 98.2 14.7 102 514-615 32-133 (157)
123 PRK15363 pathogenicity island 99.3 1E-10 2.2E-15 97.3 15.5 109 372-480 25-134 (157)
124 KOG4340 Uncharacterized conser 99.3 1.2E-08 2.5E-13 92.1 28.9 282 43-540 17-333 (459)
125 KOG4642 Chaperone-dependent E3 99.3 9.7E-12 2.1E-16 108.0 7.6 97 41-137 15-112 (284)
126 PF12895 Apc3: Anaphase-promot 99.3 1.4E-11 3E-16 94.6 7.2 80 49-129 2-84 (84)
127 PRK10866 outer membrane biogen 99.2 3.2E-09 6.8E-14 98.9 23.6 84 379-462 30-119 (243)
128 KOG4340 Uncharacterized conser 99.2 1.2E-09 2.5E-14 98.3 19.1 266 369-637 32-328 (459)
129 PF13414 TPR_11: TPR repeat; P 99.2 4.1E-11 8.8E-16 88.2 8.2 67 68-134 2-69 (69)
130 PLN03088 SGT1, suppressor of 99.2 2.8E-10 6.2E-15 112.9 16.5 113 384-496 5-117 (356)
131 KOG2047 mRNA splicing factor [ 99.2 1.2E-07 2.6E-12 94.5 33.7 190 428-617 360-582 (835)
132 PF13525 YfiO: Outer membrane 99.2 3.5E-09 7.5E-14 96.4 21.7 174 380-570 4-197 (203)
133 KOG0551 Hsp90 co-chaperone CNS 99.2 1.7E-10 3.7E-15 105.4 10.6 98 36-133 81-183 (390)
134 PF13525 YfiO: Outer membrane 99.2 6.3E-09 1.4E-13 94.7 20.9 175 414-605 4-198 (203)
135 PRK10866 outer membrane biogen 99.2 1.7E-08 3.7E-13 94.0 24.1 182 413-611 30-238 (243)
136 KOG2047 mRNA splicing factor [ 99.2 3.8E-06 8.3E-11 84.1 40.6 241 371-613 339-614 (835)
137 COG4785 NlpI Lipoprotein NlpI, 99.2 4.3E-09 9.4E-14 90.4 17.6 198 379-581 63-267 (297)
138 PRK04841 transcriptional regul 99.1 1.9E-08 4.2E-13 114.9 28.5 259 381-639 452-751 (903)
139 TIGR02795 tol_pal_ybgF tol-pal 99.1 3.5E-09 7.5E-14 87.9 14.6 105 381-485 2-112 (119)
140 PRK11906 transcriptional regul 99.1 1.4E-08 3E-13 99.1 19.2 162 383-544 257-434 (458)
141 COG4785 NlpI Lipoprotein NlpI, 99.1 8.6E-09 1.9E-13 88.5 15.5 214 415-634 65-290 (297)
142 PF13432 TPR_16: Tetratricopep 99.1 7.8E-10 1.7E-14 80.1 7.9 65 73-137 1-65 (65)
143 KOG0376 Serine-threonine phosp 99.1 2.5E-10 5.4E-15 110.4 6.5 112 41-152 9-121 (476)
144 COG4235 Cytochrome c biogenesi 99.1 7.7E-09 1.7E-13 95.0 15.8 120 431-550 138-260 (287)
145 PRK02603 photosystem I assembl 99.0 1.1E-08 2.4E-13 90.8 16.5 121 376-516 30-153 (172)
146 TIGR02795 tol_pal_ybgF tol-pal 99.0 6.9E-09 1.5E-13 86.1 14.4 104 416-519 3-112 (119)
147 COG0457 NrfG FOG: TPR repeat [ 99.0 1E-06 2.2E-11 83.5 31.2 224 394-617 36-268 (291)
148 PRK10153 DNA-binding transcrip 99.0 1.9E-08 4.1E-13 103.9 19.7 141 376-517 332-487 (517)
149 COG4235 Cytochrome c biogenesi 99.0 1.1E-08 2.4E-13 93.9 15.8 121 397-517 138-261 (287)
150 PRK02603 photosystem I assembl 99.0 2.3E-08 4.9E-13 88.8 17.2 115 484-618 36-153 (172)
151 PF09976 TPR_21: Tetratricopep 99.0 2.5E-08 5.5E-13 85.6 16.6 124 385-509 15-144 (145)
152 KOG0545 Aryl-hydrocarbon recep 99.0 9E-09 2E-13 90.1 13.4 110 30-139 172-300 (329)
153 CHL00033 ycf3 photosystem I as 99.0 1.7E-08 3.6E-13 89.4 15.2 98 465-562 15-117 (168)
154 PF14938 SNAP: Soluble NSF att 99.0 3.2E-08 6.9E-13 95.4 18.2 195 422-617 42-269 (282)
155 KOG3081 Vesicle coat complex C 99.0 3.2E-07 7E-12 81.9 22.6 162 451-619 110-276 (299)
156 PF09976 TPR_21: Tetratricopep 99.0 3.9E-08 8.4E-13 84.4 16.7 117 495-612 23-145 (145)
157 PRK11906 transcriptional regul 99.0 5.7E-08 1.2E-12 94.9 19.4 132 419-550 259-405 (458)
158 PF13414 TPR_11: TPR repeat; P 99.0 4E-09 8.6E-14 77.5 9.0 65 416-480 4-69 (69)
159 KOG1070 rRNA processing protei 99.0 2.4E-07 5.2E-12 100.0 25.5 234 396-630 1439-1681(1710)
160 cd00189 TPR Tetratricopeptide 99.0 1E-08 2.2E-13 81.2 12.1 97 520-616 3-99 (100)
161 PRK10153 DNA-binding transcrip 99.0 3.7E-08 8.1E-13 101.8 19.2 142 409-551 331-487 (517)
162 cd00189 TPR Tetratricopeptide 99.0 1.1E-08 2.5E-13 80.9 12.2 97 384-480 3-99 (100)
163 COG0457 NrfG FOG: TPR repeat [ 99.0 1.3E-06 2.7E-11 82.9 28.1 204 380-583 58-268 (291)
164 CHL00033 ycf3 photosystem I as 98.9 2.6E-08 5.7E-13 88.1 14.8 100 395-494 13-117 (168)
165 PF12895 Apc3: Anaphase-promot 98.9 3.3E-09 7.2E-14 81.3 7.5 81 394-475 2-84 (84)
166 KOG4648 Uncharacterized conser 98.9 1.5E-09 3.3E-14 99.5 5.8 230 384-622 100-338 (536)
167 PRK15331 chaperone protein Sic 98.9 3.8E-08 8.2E-13 82.4 13.5 113 370-483 26-138 (165)
168 KOG1941 Acetylcholine receptor 98.9 1.4E-07 3.1E-12 87.5 17.9 234 381-614 6-275 (518)
169 PRK15331 chaperone protein Sic 98.9 4.1E-08 9E-13 82.2 13.0 96 518-613 38-133 (165)
170 PF13432 TPR_16: Tetratricopep 98.9 6.9E-09 1.5E-13 75.1 7.3 63 386-448 2-64 (65)
171 PRK10803 tol-pal system protei 98.9 9.5E-08 2.1E-12 89.6 16.7 105 381-485 142-253 (263)
172 COG4105 ComL DNA uptake lipopr 98.9 9.8E-07 2.1E-11 79.5 21.3 190 378-584 31-237 (254)
173 KOG4555 TPR repeat-containing 98.9 4.5E-08 9.8E-13 76.8 11.2 103 46-150 53-160 (175)
174 KOG0543 FKBP-type peptidyl-pro 98.9 9.9E-08 2.1E-12 90.9 15.8 129 384-512 211-355 (397)
175 PF14938 SNAP: Soluble NSF att 98.8 1.6E-07 3.5E-12 90.5 17.2 200 381-581 35-267 (282)
176 PRK10803 tol-pal system protei 98.8 2.4E-07 5.2E-12 86.9 16.9 105 415-519 142-253 (263)
177 KOG1941 Acetylcholine receptor 98.8 4.3E-07 9.3E-12 84.4 17.7 219 416-634 84-346 (518)
178 KOG1070 rRNA processing protei 98.8 2.4E-06 5.2E-11 92.6 25.6 212 369-581 1446-1664(1710)
179 PF09295 ChAPs: ChAPs (Chs5p-A 98.8 2.7E-07 5.9E-12 91.0 16.3 119 422-543 176-294 (395)
180 COG4105 ComL DNA uptake lipopr 98.8 4.7E-06 1E-10 75.2 22.5 189 414-619 33-238 (254)
181 PF09295 ChAPs: ChAPs (Chs5p-A 98.7 2.9E-07 6.2E-12 90.9 15.8 121 454-577 174-294 (395)
182 KOG3081 Vesicle coat complex C 98.7 1.1E-05 2.3E-10 72.5 23.6 239 388-637 15-259 (299)
183 KOG2053 Mitochondrial inherita 98.7 1.3E-05 2.9E-10 83.6 27.8 226 391-618 19-259 (932)
184 PF13371 TPR_9: Tetratricopept 98.7 6.2E-08 1.4E-12 72.1 8.1 64 76-139 2-65 (73)
185 COG3898 Uncharacterized membra 98.7 3.3E-05 7.1E-10 73.0 27.3 248 380-634 119-378 (531)
186 KOG1308 Hsp70-interacting prot 98.7 8.1E-09 1.8E-13 95.3 3.6 104 30-133 108-212 (377)
187 PF12688 TPR_5: Tetratrico pep 98.7 5.6E-07 1.2E-11 72.8 13.6 94 417-510 3-102 (120)
188 PF12688 TPR_5: Tetratrico pep 98.7 6E-07 1.3E-11 72.6 13.4 94 451-544 3-102 (120)
189 PF14559 TPR_19: Tetratricopep 98.7 7.3E-08 1.6E-12 70.5 7.3 66 392-457 2-67 (68)
190 PF14559 TPR_19: Tetratricopep 98.7 1.2E-07 2.7E-12 69.3 7.7 66 562-627 2-67 (68)
191 PF13512 TPR_18: Tetratricopep 98.6 1.5E-06 3.2E-11 71.4 14.3 104 379-482 8-132 (142)
192 COG1729 Uncharacterized protei 98.6 1.4E-06 3.1E-11 79.2 15.2 104 384-487 144-253 (262)
193 COG1729 Uncharacterized protei 98.6 1.1E-06 2.3E-11 80.1 14.0 101 486-586 144-250 (262)
194 KOG3617 WD40 and TPR repeat-co 98.6 2.9E-05 6.3E-10 80.0 25.1 244 385-638 804-1164(1416)
195 KOG4234 TPR repeat-containing 98.6 4.8E-07 1E-11 77.0 10.4 109 486-594 98-211 (271)
196 COG4700 Uncharacterized protei 98.6 1.2E-05 2.7E-10 67.8 18.0 143 464-608 71-216 (251)
197 PF13371 TPR_9: Tetratricopept 98.6 3.4E-07 7.3E-12 68.1 8.1 68 558-625 2-69 (73)
198 COG4700 Uncharacterized protei 98.5 9.8E-06 2.1E-10 68.4 16.8 144 493-638 66-212 (251)
199 KOG2796 Uncharacterized conser 98.5 0.00012 2.5E-09 65.7 23.2 225 380-617 68-318 (366)
200 PLN03098 LPA1 LOW PSII ACCUMUL 98.5 4.7E-07 1E-11 88.5 9.1 66 67-132 73-141 (453)
201 PF13512 TPR_18: Tetratricopep 98.5 7.4E-06 1.6E-10 67.3 14.3 85 414-498 9-99 (142)
202 KOG3617 WD40 and TPR repeat-co 98.5 3.9E-05 8.3E-10 79.2 22.4 224 403-639 791-1100(1416)
203 KOG2053 Mitochondrial inherita 98.5 0.00077 1.7E-08 70.9 31.8 215 369-584 31-259 (932)
204 COG3898 Uncharacterized membra 98.4 0.00036 7.8E-09 66.3 25.5 248 385-638 88-348 (531)
205 PF13424 TPR_12: Tetratricopep 98.4 8.8E-07 1.9E-11 66.8 6.2 63 70-132 6-75 (78)
206 KOG2471 TPR repeat-containing 98.4 0.00011 2.5E-09 71.4 21.1 269 370-639 229-675 (696)
207 KOG2796 Uncharacterized conser 98.3 0.00037 7.9E-09 62.6 22.0 186 386-584 127-319 (366)
208 KOG2471 TPR repeat-containing 98.3 1.4E-05 3E-10 77.6 13.8 218 415-632 100-382 (696)
209 PF06552 TOM20_plant: Plant sp 98.3 6.3E-06 1.4E-10 69.8 10.2 91 52-142 7-119 (186)
210 KOG4555 TPR repeat-containing 98.3 3.1E-05 6.7E-10 61.3 13.1 91 524-614 50-144 (175)
211 KOG2610 Uncharacterized conser 98.3 0.00018 3.8E-09 66.8 19.5 159 420-578 108-274 (491)
212 PLN03098 LPA1 LOW PSII ACCUMUL 98.2 2.4E-05 5.2E-10 76.9 13.9 70 375-444 69-141 (453)
213 KOG1586 Protein required for f 98.2 0.00026 5.7E-09 62.4 18.6 179 394-587 27-231 (288)
214 KOG2300 Uncharacterized conser 98.2 0.0053 1.1E-07 60.3 29.0 213 393-608 287-550 (629)
215 PF13424 TPR_12: Tetratricopep 98.2 3.8E-06 8.2E-11 63.3 5.8 26 587-612 48-73 (78)
216 PF13431 TPR_17: Tetratricopep 98.2 2.5E-06 5.5E-11 51.6 3.5 32 92-123 2-33 (34)
217 KOG2610 Uncharacterized conser 98.1 0.00027 5.8E-09 65.7 17.9 159 454-612 108-274 (491)
218 PF06552 TOM20_plant: Plant sp 98.1 4.7E-05 1E-09 64.7 11.9 86 397-482 7-113 (186)
219 PF05843 Suf: Suppressor of fo 98.1 0.00018 3.8E-09 69.2 17.3 133 417-549 3-139 (280)
220 PF04184 ST7: ST7 protein; In 98.1 0.00039 8.5E-09 68.6 19.0 119 389-509 176-321 (539)
221 KOG1586 Protein required for f 98.1 0.0034 7.4E-08 55.6 22.6 170 383-553 36-231 (288)
222 PF13428 TPR_14: Tetratricopep 98.1 7.8E-06 1.7E-10 53.2 4.9 42 70-111 2-43 (44)
223 PF05843 Suf: Suppressor of fo 98.1 0.00018 4E-09 69.0 16.5 134 383-516 3-140 (280)
224 PF04184 ST7: ST7 protein; In 98.1 0.0011 2.5E-08 65.4 21.4 167 421-589 174-384 (539)
225 PF13281 DUF4071: Domain of un 98.1 0.0031 6.7E-08 61.6 24.3 103 378-480 138-257 (374)
226 KOG1585 Protein required for f 98.1 0.0037 8.1E-08 55.7 22.3 194 381-575 31-251 (308)
227 PF00515 TPR_1: Tetratricopept 98.0 9E-06 1.9E-10 49.6 4.2 33 70-102 2-34 (34)
228 PF13428 TPR_14: Tetratricopep 98.0 1.4E-05 3E-10 52.0 5.0 42 586-627 2-43 (44)
229 PF13281 DUF4071: Domain of un 98.0 0.0013 2.8E-08 64.2 19.9 181 414-620 140-340 (374)
230 KOG4642 Chaperone-dependent E3 97.9 0.00014 2.9E-09 64.4 11.3 95 384-478 13-107 (284)
231 KOG1585 Protein required for f 97.9 0.0025 5.5E-08 56.8 18.2 196 415-611 31-253 (308)
232 KOG2300 Uncharacterized conser 97.9 0.033 7.1E-07 55.0 40.3 208 427-634 287-540 (629)
233 KOG0530 Protein farnesyltransf 97.9 0.0036 7.8E-08 56.5 19.3 235 391-625 53-309 (318)
234 PF00515 TPR_1: Tetratricopept 97.8 4.5E-05 9.8E-10 46.4 4.8 33 103-135 1-33 (34)
235 KOG0545 Aryl-hydrocarbon recep 97.8 0.00072 1.6E-08 60.1 13.0 104 381-484 178-299 (329)
236 PF13431 TPR_17: Tetratricopep 97.8 2.5E-05 5.4E-10 47.2 2.8 32 608-639 2-33 (34)
237 KOG0376 Serine-threonine phosp 97.7 5.3E-05 1.2E-09 74.2 6.4 110 384-493 7-116 (476)
238 PF07719 TPR_2: Tetratricopept 97.7 7.8E-05 1.7E-09 45.4 4.5 30 72-101 4-33 (34)
239 COG3118 Thioredoxin domain-con 97.7 0.0032 6.9E-08 58.2 16.3 149 381-531 134-286 (304)
240 PF02259 FAT: FAT domain; Int 97.7 0.017 3.7E-07 58.1 23.9 116 517-632 146-305 (352)
241 PF07719 TPR_2: Tetratricopept 97.7 0.00011 2.4E-09 44.7 4.9 33 103-135 1-33 (34)
242 KOG4507 Uncharacterized conser 97.7 0.0032 6.9E-08 63.1 17.0 102 528-629 618-720 (886)
243 KOG1310 WD40 repeat protein [G 97.6 0.00018 3.9E-09 70.8 8.1 101 42-142 380-484 (758)
244 KOG3616 Selective LIM binding 97.6 0.13 2.9E-06 53.4 30.6 36 583-618 993-1028(1636)
245 KOG1550 Extracellular protein 97.6 0.018 3.9E-07 61.2 22.7 238 381-629 244-516 (552)
246 PF02259 FAT: FAT domain; Int 97.5 0.039 8.5E-07 55.5 24.3 137 481-617 144-341 (352)
247 PF10300 DUF3808: Protein of u 97.5 0.0059 1.3E-07 63.2 18.0 156 391-546 198-376 (468)
248 PF10300 DUF3808: Protein of u 97.5 0.0077 1.7E-07 62.4 18.3 117 497-613 247-375 (468)
249 KOG1258 mRNA processing protei 97.5 0.16 3.5E-06 52.0 27.9 270 369-638 67-419 (577)
250 COG2976 Uncharacterized protei 97.5 0.0018 3.8E-08 55.9 10.9 91 45-137 98-193 (207)
251 COG3118 Thioredoxin domain-con 97.4 0.01 2.3E-07 55.0 16.2 59 416-474 135-193 (304)
252 COG2909 MalT ATP-dependent tra 97.4 0.098 2.1E-06 56.0 25.0 233 379-611 413-685 (894)
253 KOG1914 mRNA cleavage and poly 97.4 0.075 1.6E-06 53.4 22.5 215 402-616 266-503 (656)
254 KOG0530 Protein farnesyltransf 97.4 0.034 7.4E-07 50.4 18.2 219 394-629 39-269 (318)
255 KOG0551 Hsp90 co-chaperone CNS 97.3 0.0034 7.5E-08 58.6 11.6 101 381-481 81-185 (390)
256 PF12968 DUF3856: Domain of Un 97.3 0.0053 1.1E-07 48.0 10.7 90 42-131 15-128 (144)
257 PF03704 BTAD: Bacterial trans 97.3 0.0097 2.1E-07 51.0 13.6 115 384-511 9-124 (146)
258 PF13181 TPR_8: Tetratricopept 97.2 0.00068 1.5E-08 41.1 4.5 31 104-134 2-32 (34)
259 PF08631 SPO22: Meiosis protei 97.2 0.22 4.8E-06 47.9 26.7 221 391-612 3-273 (278)
260 KOG0985 Vesicle coat protein c 97.2 0.088 1.9E-06 56.8 22.0 209 380-609 1103-1336(1666)
261 COG0790 FOG: TPR repeat, SEL1 97.2 0.24 5.2E-06 48.3 25.2 167 390-565 50-236 (292)
262 PF07079 DUF1347: Protein of u 97.2 0.26 5.7E-06 48.6 27.1 94 385-478 49-157 (549)
263 COG0790 FOG: TPR repeat, SEL1 97.2 0.24 5.3E-06 48.2 25.1 186 425-619 51-271 (292)
264 PF13181 TPR_8: Tetratricopept 97.1 0.00075 1.6E-08 40.9 3.8 33 70-102 2-34 (34)
265 PF04910 Tcf25: Transcriptiona 97.1 0.027 5.8E-07 55.9 16.7 143 409-551 34-227 (360)
266 KOG1914 mRNA cleavage and poly 97.1 0.38 8.2E-06 48.6 37.8 138 499-636 347-489 (656)
267 PF03704 BTAD: Bacterial trans 97.1 0.016 3.5E-07 49.7 13.4 112 422-546 13-125 (146)
268 COG2976 Uncharacterized protei 97.1 0.042 9E-07 47.7 15.2 116 503-619 72-193 (207)
269 KOG1308 Hsp70-interacting prot 97.1 0.00054 1.2E-08 64.2 4.2 95 386-480 119-213 (377)
270 PF14853 Fis1_TPR_C: Fis1 C-te 97.1 0.0023 5E-08 42.9 6.1 42 71-112 3-44 (53)
271 PF13176 TPR_7: Tetratricopept 97.1 0.00085 1.8E-08 41.2 3.7 29 105-133 1-29 (36)
272 PF08424 NRDE-2: NRDE-2, neces 97.0 0.07 1.5E-06 52.4 18.8 114 468-581 50-184 (321)
273 COG2909 MalT ATP-dependent tra 96.9 0.81 1.8E-05 49.4 26.6 255 379-639 345-638 (894)
274 PF08424 NRDE-2: NRDE-2, neces 96.9 0.11 2.3E-06 51.2 18.7 144 404-547 8-184 (321)
275 KOG1550 Extracellular protein 96.7 0.22 4.7E-06 53.1 20.6 175 396-578 227-424 (552)
276 KOG3616 Selective LIM binding 96.7 1.1 2.3E-05 47.1 29.1 50 79-129 454-503 (1636)
277 COG5107 RNA14 Pre-mRNA 3'-end 96.7 0.48 1E-05 46.7 20.2 129 490-618 404-535 (660)
278 PF04910 Tcf25: Transcriptiona 96.6 0.13 2.8E-06 51.2 17.0 142 441-582 32-224 (360)
279 PF13174 TPR_6: Tetratricopept 96.6 0.0043 9.3E-08 37.1 4.1 30 72-101 3-32 (33)
280 KOG4507 Uncharacterized conser 96.6 0.013 2.9E-07 58.9 9.4 98 48-145 619-718 (886)
281 KOG3824 Huntingtin interacting 96.6 0.0056 1.2E-07 56.5 6.3 69 73-141 120-188 (472)
282 PRK10941 hypothetical protein; 96.6 0.02 4.4E-07 53.9 10.2 69 73-141 185-253 (269)
283 COG5107 RNA14 Pre-mRNA 3'-end 96.6 0.33 7.2E-06 47.8 18.3 214 368-584 289-535 (660)
284 PF09613 HrpB1_HrpK: Bacterial 96.5 0.058 1.3E-06 45.6 11.5 86 381-466 10-95 (160)
285 KOG0890 Protein kinase of the 96.5 3.1 6.8E-05 50.1 32.2 90 47-141 1394-1487(2382)
286 PF15015 NYD-SP12_N: Spermatog 96.5 0.0086 1.9E-07 57.7 7.2 86 45-130 185-289 (569)
287 PF13174 TPR_6: Tetratricopept 96.4 0.007 1.5E-07 36.2 4.2 29 418-446 3-31 (33)
288 KOG3783 Uncharacterized conser 96.4 0.21 4.5E-06 50.6 16.4 66 552-617 450-523 (546)
289 PF13176 TPR_7: Tetratricopept 96.3 0.0066 1.4E-07 37.2 3.6 27 72-98 2-28 (36)
290 KOG0546 HSP90 co-chaperone CPR 96.3 0.0071 1.5E-07 57.2 5.4 102 42-143 228-349 (372)
291 PF10345 Cohesin_load: Cohesin 96.3 2.3 5E-05 46.2 32.2 271 368-639 42-424 (608)
292 smart00028 TPR Tetratricopepti 96.2 0.0091 2E-07 35.2 4.1 31 71-101 3-33 (34)
293 KOG1464 COP9 signalosome, subu 96.2 0.42 9.2E-06 43.7 15.6 188 394-581 40-261 (440)
294 KOG0985 Vesicle coat protein c 96.2 0.53 1.1E-05 51.2 18.6 219 387-631 1054-1325(1666)
295 PF04781 DUF627: Protein of un 96.1 0.094 2E-06 41.1 10.0 103 387-512 2-107 (111)
296 PF09613 HrpB1_HrpK: Bacterial 96.1 0.13 2.8E-06 43.6 11.6 77 490-566 17-93 (160)
297 KOG0890 Protein kinase of the 96.1 1.6 3.4E-05 52.5 23.7 83 42-124 1455-1539(2382)
298 PRK10941 hypothetical protein; 96.1 0.066 1.4E-06 50.5 10.9 76 553-628 183-258 (269)
299 PRK13184 pknD serine/threonine 96.0 3.5 7.6E-05 46.3 28.6 93 45-138 484-587 (932)
300 PF14853 Fis1_TPR_C: Fis1 C-te 96.0 0.039 8.4E-07 37.1 6.5 37 383-419 3-39 (53)
301 KOG2396 HAT (Half-A-TPR) repea 95.9 0.16 3.4E-06 50.8 12.8 95 432-526 88-183 (568)
302 smart00028 TPR Tetratricopepti 95.9 0.014 3.1E-07 34.3 3.8 32 104-135 2-33 (34)
303 KOG3824 Huntingtin interacting 95.8 0.043 9.3E-07 50.9 8.0 72 522-593 121-192 (472)
304 KOG2041 WD40 repeat protein [G 95.8 1.3 2.9E-05 46.2 19.0 156 377-541 688-876 (1189)
305 PF14561 TPR_20: Tetratricopep 95.8 0.14 3E-06 39.2 9.6 64 401-464 8-73 (90)
306 PRK15180 Vi polysaccharide bio 95.8 0.2 4.3E-06 49.6 12.6 126 391-516 299-424 (831)
307 PF08631 SPO22: Meiosis protei 95.7 2 4.4E-05 41.3 24.7 214 425-639 3-266 (278)
308 PF07079 DUF1347: Protein of u 95.7 2.6 5.7E-05 42.0 38.2 120 489-611 385-521 (549)
309 COG4976 Predicted methyltransf 95.7 0.017 3.7E-07 51.1 4.6 60 77-136 3-62 (287)
310 PF14561 TPR_20: Tetratricopep 95.6 0.19 4.1E-06 38.5 9.9 46 504-549 9-54 (90)
311 PRK15180 Vi polysaccharide bio 95.6 0.068 1.5E-06 52.7 8.7 125 426-550 300-424 (831)
312 TIGR02561 HrpB1_HrpK type III 95.5 0.23 5.1E-06 41.3 10.3 83 383-465 12-94 (153)
313 PF04781 DUF627: Protein of un 95.5 0.26 5.6E-06 38.7 10.0 44 536-579 63-106 (111)
314 KOG1464 COP9 signalosome, subu 95.5 1.5 3.2E-05 40.3 16.1 195 353-547 37-261 (440)
315 KOG4151 Myosin assembly protei 95.4 0.08 1.7E-06 55.9 9.1 112 38-149 55-173 (748)
316 PF12968 DUF3856: Domain of Un 95.4 0.96 2.1E-05 35.9 12.6 93 385-477 13-128 (144)
317 PF10345 Cohesin_load: Cohesin 95.3 5.6 0.00012 43.3 41.1 220 418-638 304-596 (608)
318 KOG4814 Uncharacterized conser 95.2 0.25 5.5E-06 50.7 11.7 90 44-133 362-458 (872)
319 KOG2396 HAT (Half-A-TPR) repea 95.2 4 8.8E-05 41.2 37.2 95 56-150 91-187 (568)
320 COG3914 Spy Predicted O-linked 95.1 1.1 2.3E-05 46.1 15.8 136 463-598 45-189 (620)
321 KOG3364 Membrane protein invol 95.1 0.18 3.9E-06 40.9 8.3 82 34-115 29-117 (149)
322 TIGR02561 HrpB1_HrpK type III 95.0 0.38 8.3E-06 40.0 10.1 71 496-566 23-93 (153)
323 COG3914 Spy Predicted O-linked 94.9 1.6 3.4E-05 45.0 16.2 136 429-564 45-189 (620)
324 KOG2041 WD40 repeat protein [G 94.6 2.3 4.9E-05 44.6 16.5 186 397-608 679-875 (1189)
325 PF10602 RPN7: 26S proteasome 94.6 0.59 1.3E-05 41.2 11.3 97 450-546 37-142 (177)
326 KOG3364 Membrane protein invol 94.5 0.89 1.9E-05 37.0 10.7 36 552-587 72-107 (149)
327 PF10516 SHNi-TPR: SHNi-TPR; 94.4 0.086 1.9E-06 32.5 3.9 29 104-132 2-30 (38)
328 COG4649 Uncharacterized protei 94.4 3 6.5E-05 35.8 16.4 133 495-628 70-209 (221)
329 KOG3783 Uncharacterized conser 94.2 1.5 3.2E-05 44.7 14.2 229 398-637 250-509 (546)
330 PF10602 RPN7: 26S proteasome 94.2 0.86 1.9E-05 40.2 11.4 98 518-615 37-143 (177)
331 KOG1310 WD40 repeat protein [G 94.1 0.2 4.3E-06 50.2 7.7 102 381-482 374-478 (758)
332 COG5191 Uncharacterized conser 93.8 0.16 3.5E-06 47.3 6.2 81 441-521 99-180 (435)
333 COG4976 Predicted methyltransf 93.8 0.11 2.3E-06 46.3 4.8 60 390-449 4-63 (287)
334 PF12862 Apc5: Anaphase-promot 93.7 0.34 7.4E-06 37.6 7.1 30 105-134 43-72 (94)
335 KOG2422 Uncharacterized conser 93.7 5 0.00011 41.3 16.6 154 429-583 252-451 (665)
336 PF09986 DUF2225: Uncharacteri 93.7 0.75 1.6E-05 42.0 10.3 65 551-615 118-195 (214)
337 KOG4814 Uncharacterized conser 93.7 0.86 1.9E-05 47.1 11.4 95 418-512 357-457 (872)
338 KOG1839 Uncharacterized protei 93.6 0.82 1.8E-05 51.5 12.2 166 380-545 931-1127(1236)
339 KOG1538 Uncharacterized conser 93.6 6.1 0.00013 41.2 17.1 176 386-577 637-830 (1081)
340 PF04053 Coatomer_WDAD: Coatom 93.5 4.4 9.6E-05 41.6 16.7 160 388-577 268-428 (443)
341 PF09986 DUF2225: Uncharacteri 93.5 1.1 2.3E-05 41.0 11.0 49 428-476 90-145 (214)
342 PF12862 Apc5: Anaphase-promot 93.4 0.32 6.9E-06 37.8 6.5 57 43-99 5-71 (94)
343 PF13374 TPR_10: Tetratricopep 93.4 0.2 4.2E-06 31.7 4.6 30 103-132 2-31 (42)
344 COG4649 Uncharacterized protei 93.3 4.8 0.0001 34.6 16.6 117 429-545 72-195 (221)
345 KOG0529 Protein geranylgeranyl 93.3 4.4 9.6E-05 40.0 15.1 137 391-527 38-193 (421)
346 COG5191 Uncharacterized conser 93.3 0.25 5.4E-06 46.1 6.5 83 508-590 98-181 (435)
347 KOG1839 Uncharacterized protei 93.2 0.94 2E-05 51.1 11.9 161 453-613 936-1127(1236)
348 KOG1538 Uncharacterized conser 93.1 4.8 0.0001 41.9 15.6 213 384-611 588-830 (1081)
349 KOG2422 Uncharacterized conser 93.1 9 0.0002 39.6 17.3 153 395-548 252-450 (665)
350 PF04053 Coatomer_WDAD: Coatom 92.7 12 0.00025 38.6 18.2 43 427-474 330-372 (443)
351 COG3629 DnrI DNA-binding trans 92.2 1.8 3.9E-05 40.9 10.6 60 72-131 156-215 (280)
352 KOG2581 26S proteasome regulat 92.1 13 0.00028 36.7 16.7 127 390-516 135-280 (493)
353 KOG0529 Protein geranylgeranyl 92.1 10 0.00022 37.6 15.7 160 431-590 45-234 (421)
354 KOG1463 26S proteasome regulat 92.0 12 0.00026 36.0 22.4 165 453-617 132-319 (411)
355 PRK13184 pknD serine/threonine 91.9 14 0.0003 41.9 18.7 131 385-516 479-624 (932)
356 PF13374 TPR_10: Tetratricopep 91.9 0.32 7E-06 30.6 4.0 30 70-99 3-32 (42)
357 PF07721 TPR_4: Tetratricopept 91.8 0.27 5.9E-06 27.3 3.1 24 104-127 2-25 (26)
358 COG1747 Uncharacterized N-term 91.4 18 0.00039 36.9 22.1 93 416-511 67-159 (711)
359 PF15015 NYD-SP12_N: Spermatog 91.3 1.2 2.6E-05 43.7 8.6 61 416-476 229-289 (569)
360 COG2912 Uncharacterized conser 91.0 1.3 2.8E-05 41.2 8.3 68 73-140 185-252 (269)
361 COG5159 RPN6 26S proteasome re 91.0 14 0.0003 34.7 20.6 161 455-617 131-317 (421)
362 PF14863 Alkyl_sulf_dimr: Alky 90.8 1 2.2E-05 37.7 6.8 53 69-121 70-122 (141)
363 COG2912 Uncharacterized conser 90.7 3.3 7.2E-05 38.6 10.6 71 555-625 185-255 (269)
364 PF10579 Rapsyn_N: Rapsyn N-te 90.6 1.8 3.9E-05 31.6 6.9 52 42-93 12-67 (80)
365 KOG1258 mRNA processing protei 90.1 27 0.00058 36.5 39.4 184 450-633 298-489 (577)
366 KOG2581 26S proteasome regulat 89.9 22 0.00047 35.2 18.5 102 381-482 169-280 (493)
367 PF11207 DUF2989: Protein of u 89.6 3.2 6.9E-05 36.9 9.1 54 551-605 141-198 (203)
368 PF10516 SHNi-TPR: SHNi-TPR; 89.4 0.74 1.6E-05 28.4 3.7 29 71-99 3-31 (38)
369 PF10579 Rapsyn_N: Rapsyn N-te 89.4 4.8 0.0001 29.5 8.2 60 383-442 8-70 (80)
370 PF07721 TPR_4: Tetratricopept 89.3 0.73 1.6E-05 25.6 3.4 23 587-609 3-25 (26)
371 COG5159 RPN6 26S proteasome re 89.2 19 0.00042 33.7 14.0 53 385-437 7-67 (421)
372 KOG3807 Predicted membrane pro 89.0 22 0.00048 34.0 19.7 113 390-514 193-306 (556)
373 PF04190 DUF410: Protein of un 89.0 21 0.00046 33.8 20.2 25 482-506 89-113 (260)
374 COG3947 Response regulator con 88.3 2.7 5.9E-05 39.3 8.1 57 73-129 283-339 (361)
375 COG3629 DnrI DNA-binding trans 87.9 3.3 7.2E-05 39.2 8.6 63 415-477 153-215 (280)
376 PF07720 TPR_3: Tetratricopept 87.4 2.4 5.2E-05 25.8 4.9 6 429-434 15-20 (36)
377 PF09670 Cas_Cas02710: CRISPR- 87.2 13 0.00028 37.6 13.1 62 383-444 133-198 (379)
378 PF10255 Paf67: RNA polymerase 87.0 2.4 5.1E-05 42.5 7.5 87 43-130 82-191 (404)
379 PF07720 TPR_3: Tetratricopept 86.8 2.7 5.9E-05 25.6 5.0 32 382-413 2-35 (36)
380 PF11207 DUF2989: Protein of u 86.6 22 0.00047 31.8 12.4 77 426-503 117-198 (203)
381 COG4941 Predicted RNA polymera 86.6 32 0.00069 33.2 16.8 188 430-627 211-407 (415)
382 KOG2063 Vacuolar assembly/sort 86.0 64 0.0014 36.2 19.4 58 72-129 310-372 (877)
383 PRK11619 lytic murein transgly 85.7 60 0.0013 35.5 26.1 123 490-613 248-374 (644)
384 TIGR03504 FimV_Cterm FimV C-te 84.7 1.9 4E-05 27.7 3.7 25 73-97 3-27 (44)
385 KOG0128 RNA-binding protein SA 84.5 68 0.0015 35.1 25.0 245 376-622 108-384 (881)
386 KOG2114 Vacuolar assembly/sort 84.4 26 0.00056 38.2 13.7 203 388-612 341-548 (933)
387 KOG0128 RNA-binding protein SA 83.6 74 0.0016 34.9 23.2 233 395-629 93-356 (881)
388 KOG1463 26S proteasome regulat 83.2 46 0.001 32.2 13.9 165 385-549 132-319 (411)
389 PF10373 EST1_DNA_bind: Est1 D 82.9 5.9 0.00013 38.1 8.4 62 468-529 1-62 (278)
390 PF00244 14-3-3: 14-3-3 protei 82.9 36 0.00078 31.7 13.0 28 419-446 5-32 (236)
391 PF13041 PPR_2: PPR repeat fam 82.6 4.5 9.8E-05 26.7 5.2 33 42-74 9-43 (50)
392 PF10373 EST1_DNA_bind: Est1 D 82.0 6.9 0.00015 37.6 8.4 62 536-597 1-62 (278)
393 PRK11619 lytic murein transgly 81.8 86 0.0019 34.3 30.6 178 459-639 251-459 (644)
394 COG3947 Response regulator con 81.5 7.4 0.00016 36.5 7.6 58 418-475 282-339 (361)
395 PF12739 TRAPPC-Trs85: ER-Golg 81.2 58 0.0013 33.5 15.0 29 417-445 210-238 (414)
396 KOG3807 Predicted membrane pro 81.1 54 0.0012 31.6 20.1 124 371-506 208-334 (556)
397 KOG0686 COP9 signalosome, subu 80.7 8.9 0.00019 37.8 8.2 88 42-129 155-255 (466)
398 PHA02537 M terminase endonucle 80.1 3.4 7.4E-05 37.8 5.0 92 45-136 92-211 (230)
399 PF10255 Paf67: RNA polymerase 79.7 73 0.0016 32.3 14.5 59 486-545 125-192 (404)
400 PF11817 Foie-gras_1: Foie gra 79.3 56 0.0012 30.7 14.1 59 552-610 179-243 (247)
401 PF09670 Cas_Cas02710: CRISPR- 78.6 61 0.0013 32.8 13.9 61 418-478 134-198 (379)
402 KOG2114 Vacuolar assembly/sort 78.6 38 0.00081 37.0 12.5 176 381-578 368-548 (933)
403 PF12854 PPR_1: PPR repeat 77.9 6.4 0.00014 23.5 4.2 27 102-128 6-32 (34)
404 PF14863 Alkyl_sulf_dimr: Alky 77.9 10 0.00023 31.8 6.9 50 381-430 70-119 (141)
405 KOG0546 HSP90 co-chaperone CPR 77.5 3.2 6.9E-05 40.0 4.2 127 487-628 226-352 (372)
406 PF09205 DUF1955: Domain of un 77.5 25 0.00054 28.9 8.4 79 48-130 68-147 (161)
407 PF12739 TRAPPC-Trs85: ER-Golg 77.5 91 0.002 32.1 16.2 32 380-411 206-238 (414)
408 smart00386 HAT HAT (Half-A-TPR 77.1 5.7 0.00012 22.9 4.0 27 600-626 2-28 (33)
409 PF11817 Foie-gras_1: Foie gra 76.8 26 0.00056 33.0 10.2 25 105-129 12-36 (247)
410 smart00386 HAT HAT (Half-A-TPR 76.7 7.2 0.00016 22.4 4.3 27 566-592 2-28 (33)
411 COG4941 Predicted RNA polymera 75.9 80 0.0017 30.7 17.3 186 397-592 212-406 (415)
412 TIGR03504 FimV_Cterm FimV C-te 75.6 6.6 0.00014 25.2 4.0 25 385-409 3-27 (44)
413 smart00299 CLH Clathrin heavy 75.3 47 0.001 27.7 15.0 27 599-630 110-136 (140)
414 KOG4279 Serine/threonine prote 74.8 32 0.00069 37.0 10.6 124 372-497 192-334 (1226)
415 PF00244 14-3-3: 14-3-3 protei 73.7 78 0.0017 29.5 14.2 62 383-444 3-66 (236)
416 COG4455 ImpE Protein of avirul 73.4 38 0.00083 30.6 9.3 59 79-137 11-69 (273)
417 KOG4014 Uncharacterized conser 73.3 64 0.0014 28.3 14.9 187 377-580 30-233 (248)
418 KOG2063 Vacuolar assembly/sort 72.5 1.7E+02 0.0038 33.0 18.6 65 39-104 310-380 (877)
419 COG5536 BET4 Protein prenyltra 72.2 73 0.0016 30.0 11.1 126 398-523 49-190 (328)
420 PF12854 PPR_1: PPR repeat 70.8 12 0.00025 22.3 4.1 26 585-610 7-32 (34)
421 TIGR02710 CRISPR-associated pr 69.5 1.2E+02 0.0027 30.4 13.0 55 386-440 135-196 (380)
422 PF13041 PPR_2: PPR repeat fam 68.8 25 0.00054 23.0 5.9 32 67-98 1-32 (50)
423 KOG4279 Serine/threonine prote 66.6 37 0.00079 36.5 9.0 116 414-531 200-334 (1226)
424 PF02184 HAT: HAT (Half-A-TPR) 66.4 11 0.00025 22.1 3.2 26 51-76 2-27 (32)
425 COG5187 RPN7 26S proteasome re 66.2 1.2E+02 0.0027 28.8 13.4 128 421-548 81-223 (412)
426 KOG0687 26S proteasome regulat 64.6 1.4E+02 0.0031 28.9 12.7 102 379-480 102-212 (393)
427 COG4259 Uncharacterized protei 62.9 56 0.0012 25.2 7.0 44 102-145 71-114 (121)
428 COG1747 Uncharacterized N-term 61.9 2E+02 0.0044 29.8 25.4 201 377-582 62-290 (711)
429 PRK12798 chemotaxis protein; R 61.6 1.9E+02 0.0041 29.3 23.5 231 388-622 87-334 (421)
430 cd02682 MIT_AAA_Arch MIT: doma 61.4 25 0.00055 25.7 4.9 16 92-107 36-51 (75)
431 COG4455 ImpE Protein of avirul 61.3 1.3E+02 0.0028 27.4 12.8 60 389-448 9-68 (273)
432 KOG0276 Vesicle coat complex C 60.7 1.3E+02 0.0028 31.9 11.4 79 451-545 616-694 (794)
433 KOG0276 Vesicle coat complex C 60.4 1.7E+02 0.0036 31.1 12.1 132 383-543 616-747 (794)
434 PF09205 DUF1955: Domain of un 60.1 58 0.0013 26.9 7.1 51 563-613 98-148 (161)
435 PF01535 PPR: PPR repeat; Int 56.1 21 0.00045 20.1 3.3 19 490-508 7-25 (31)
436 COG5536 BET4 Protein prenyltra 55.9 1.9E+02 0.0041 27.5 17.8 130 397-526 90-236 (328)
437 cd02681 MIT_calpain7_1 MIT: do 55.4 25 0.00054 25.9 4.1 18 48-65 18-35 (76)
438 KOG0686 COP9 signalosome, subu 55.0 2.4E+02 0.0051 28.4 14.3 23 589-611 233-255 (466)
439 smart00299 CLH Clathrin heavy 54.4 1.3E+02 0.0027 25.1 15.1 27 565-596 110-136 (140)
440 cd02682 MIT_AAA_Arch MIT: doma 54.0 85 0.0018 23.0 6.6 28 382-409 7-34 (75)
441 cd02683 MIT_1 MIT: domain cont 53.6 25 0.00053 26.0 3.9 16 48-63 18-33 (77)
442 cd02677 MIT_SNX15 MIT: domain 52.7 20 0.00044 26.2 3.3 10 54-63 5-14 (75)
443 KOG4151 Myosin assembly protei 51.8 61 0.0013 35.2 7.9 100 490-589 60-165 (748)
444 PF11846 DUF3366: Domain of un 51.8 44 0.00094 30.0 6.2 48 86-134 128-175 (193)
445 PF10475 DUF2450: Protein of u 51.3 1.5E+02 0.0033 28.7 10.2 112 18-129 109-223 (291)
446 PF04212 MIT: MIT (microtubule 50.7 34 0.00073 24.5 4.3 18 48-65 17-34 (69)
447 KOG0567 HEAT repeat-containing 50.2 2.3E+02 0.0049 26.7 15.7 200 393-613 61-261 (289)
448 cd02680 MIT_calpain7_2 MIT: do 49.7 42 0.00091 24.6 4.5 15 83-97 20-34 (75)
449 cd02677 MIT_SNX15 MIT: domain 49.4 25 0.00055 25.7 3.4 15 117-131 20-34 (75)
450 TIGR00756 PPR pentatricopeptid 48.8 40 0.00087 19.3 3.9 21 557-577 6-26 (35)
451 cd02680 MIT_calpain7_2 MIT: do 48.5 35 0.00075 25.0 3.9 16 428-443 19-34 (75)
452 PF07219 HemY_N: HemY protein 47.4 95 0.0021 24.7 6.8 48 382-429 60-107 (108)
453 PF04090 RNA_pol_I_TF: RNA pol 46.5 2.2E+02 0.0048 25.6 10.5 58 451-508 43-101 (199)
454 PF04190 DUF410: Protein of un 46.3 2.7E+02 0.0058 26.5 21.0 199 381-599 10-242 (260)
455 PF09145 Ubiq-assoc: Ubiquitin 46.2 38 0.00081 21.5 3.2 25 40-64 7-32 (46)
456 COG5187 RPN7 26S proteasome re 46.0 2.8E+02 0.006 26.5 13.7 132 385-516 79-225 (412)
457 KOG4014 Uncharacterized conser 45.8 2.1E+02 0.0046 25.2 16.0 183 413-614 32-233 (248)
458 PF02064 MAS20: MAS20 protein 45.3 58 0.0012 26.5 5.1 37 36-72 62-99 (121)
459 KOG4521 Nuclear pore complex, 45.3 5.6E+02 0.012 29.9 16.8 115 415-533 920-1070(1480)
460 PF10938 YfdX: YfdX protein; 44.7 81 0.0018 27.1 6.3 60 38-97 77-145 (155)
461 KOG1920 IkappaB kinase complex 44.6 5.3E+02 0.011 30.2 13.7 18 77-94 685-702 (1265)
462 PF13226 DUF4034: Domain of un 44.1 3E+02 0.0064 26.4 10.7 134 388-534 7-150 (277)
463 PF11846 DUF3366: Domain of un 44.0 93 0.002 27.8 7.1 32 415-446 144-175 (193)
464 PF01239 PPTA: Protein prenylt 43.9 63 0.0014 18.5 4.3 29 88-116 2-30 (31)
465 PF04212 MIT: MIT (microtubule 43.4 43 0.00093 23.9 3.9 25 73-97 9-33 (69)
466 KOG1497 COP9 signalosome, subu 43.1 3E+02 0.0066 26.7 10.0 95 451-545 105-212 (399)
467 cd02656 MIT MIT: domain contai 42.3 84 0.0018 22.8 5.4 18 48-65 18-35 (75)
468 PF13812 PPR_3: Pentatricopept 42.0 68 0.0015 18.4 4.2 22 556-577 6-27 (34)
469 TIGR02710 CRISPR-associated pr 41.9 3.8E+02 0.0083 27.0 13.4 54 421-474 136-196 (380)
470 PF10952 DUF2753: Protein of u 41.8 1.6E+02 0.0035 24.0 6.9 34 552-585 51-88 (140)
471 PF10952 DUF2753: Protein of u 41.6 1.6E+02 0.0035 24.0 6.8 27 384-410 4-30 (140)
472 PF04348 LppC: LppC putative l 41.2 8.9 0.00019 40.7 0.0 96 380-475 23-124 (536)
473 cd02681 MIT_calpain7_1 MIT: do 40.9 45 0.00097 24.5 3.6 25 73-97 10-34 (76)
474 PHA02537 M terminase endonucle 40.6 49 0.0011 30.5 4.6 20 426-445 94-113 (230)
475 cd02678 MIT_VPS4 MIT: domain c 40.1 23 0.0005 25.9 2.0 19 47-65 17-35 (75)
476 cd02683 MIT_1 MIT: domain cont 40.0 46 0.001 24.5 3.6 18 86-103 30-47 (77)
477 PF04348 LppC: LppC putative l 39.8 9.6 0.00021 40.5 0.0 94 416-509 25-124 (536)
478 KOG2062 26S proteasome regulat 39.5 5.6E+02 0.012 28.3 16.8 139 488-632 506-655 (929)
479 PRK12798 chemotaxis protein; R 39.3 4.3E+02 0.0093 26.9 22.0 197 380-577 111-321 (421)
480 PF13226 DUF4034: Domain of un 37.9 3.7E+02 0.008 25.7 11.2 74 456-529 7-89 (277)
481 PRK15490 Vi polysaccharide bio 37.8 2.7E+02 0.0059 29.8 9.9 79 495-575 20-98 (578)
482 cd00280 TRFH Telomeric Repeat 37.5 2.6E+02 0.0057 24.8 8.1 42 387-429 117-158 (200)
483 PRK15490 Vi polysaccharide bio 37.3 2.4E+02 0.0053 30.2 9.5 68 370-439 31-98 (578)
484 PF04090 RNA_pol_I_TF: RNA pol 37.3 3.1E+02 0.0068 24.7 10.8 65 382-446 42-107 (199)
485 smart00671 SEL1 Sel1-like repe 36.8 71 0.0015 18.7 3.6 27 104-130 2-32 (36)
486 KOG2758 Translation initiation 35.7 4.3E+02 0.0092 25.8 16.9 28 411-438 125-152 (432)
487 KOG2561 Adaptor protein NUB1, 35.5 1.5E+02 0.0033 29.9 7.2 26 554-579 270-295 (568)
488 PF04097 Nic96: Nup93/Nic96; 35.0 6.4E+02 0.014 27.6 14.6 212 423-639 266-525 (613)
489 PF02064 MAS20: MAS20 protein 33.9 76 0.0016 25.8 4.2 33 104-136 64-96 (121)
490 KOG2561 Adaptor protein NUB1, 33.5 3.8E+02 0.0083 27.3 9.5 95 384-478 166-296 (568)
491 KOG2758 Translation initiation 33.3 4.7E+02 0.01 25.5 22.6 185 434-618 114-321 (432)
492 PF08238 Sel1: Sel1 repeat; I 33.2 99 0.0022 18.5 4.0 28 103-130 1-35 (39)
493 PF07219 HemY_N: HemY protein 33.0 2.1E+02 0.0045 22.7 6.7 43 591-633 65-107 (108)
494 cd02679 MIT_spastin MIT: domai 32.9 88 0.0019 23.2 4.0 33 84-131 4-36 (79)
495 KOG3677 RNA polymerase I-assoc 32.7 53 0.0011 32.8 3.7 56 71-130 237-299 (525)
496 TIGR02508 type_III_yscG type I 32.4 1.1E+02 0.0025 23.8 4.6 46 41-90 44-89 (115)
497 TIGR03362 VI_chp_7 type VI sec 31.1 5.1E+02 0.011 25.3 16.7 132 378-511 97-278 (301)
498 smart00777 Mad3_BUB1_I Mad3/BU 31.1 3E+02 0.0065 22.6 8.0 41 570-610 82-124 (125)
499 PF15297 CKAP2_C: Cytoskeleton 29.4 2.4E+02 0.0051 27.8 7.3 53 86-138 120-175 (353)
500 TIGR00985 3a0801s04tom mitocho 28.9 3.6E+02 0.0079 22.9 7.9 60 85-145 63-132 (148)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=2.2e-41 Score=325.69 Aligned_cols=267 Identities=18% Similarity=0.232 Sum_probs=257.9
Q ss_pred HHhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Q 006562 369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA 448 (640)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 448 (640)
.+.++.+.+|.-+++++++|.+|-..+.|++|+..|.+++...|+++.++-++|.+|+.+|..+-|+..|+++++..|+.
T Consensus 240 ~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F 319 (966)
T KOG4626|consen 240 HYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNF 319 (966)
T ss_pred HHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCc
Confidence 45667789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 006562 449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALS 528 (640)
Q Consensus 449 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 528 (640)
++++.++|..+...|+..+|..+|.+++.+.|.++++.+++|.++..+|.+++|...|.++++..|....++.++|.+|.
T Consensus 320 ~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~k 399 (966)
T KOG4626|consen 320 PDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYK 399 (966)
T ss_pred hHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 006562 529 SIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL 608 (640)
Q Consensus 529 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 608 (640)
++|++++|+.+|++++++.|...+++.++|..|..+|+.+.|+..|.+++..+|..++++.++|.+|...|+..+|+..|
T Consensus 400 qqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY 479 (966)
T KOG4626|consen 400 QQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSY 479 (966)
T ss_pred hcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCCCCHHHHHHHHHHHHHcCCc
Q 006562 609 SSGLGIDPSNIECLYLRASCYHAIGEY 635 (640)
Q Consensus 609 ~~al~~~p~~~~~~~~la~~~~~~g~~ 635 (640)
+.++++.|+.++++-+++.++.-.-++
T Consensus 480 ~~aLklkPDfpdA~cNllh~lq~vcdw 506 (966)
T KOG4626|consen 480 RTALKLKPDFPDAYCNLLHCLQIVCDW 506 (966)
T ss_pred HHHHccCCCCchhhhHHHHHHHHHhcc
Confidence 999999999999999998887655444
No 2
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.6e-41 Score=314.98 Aligned_cols=436 Identities=20% Similarity=0.228 Sum_probs=323.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHcccCc-hhHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHH
Q 006562 42 ELAKLCSLRNWSKAIRILDSLLAQSYE-IQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKE 120 (640)
Q Consensus 42 ~~~~~~~~~~y~~Ai~~y~~ai~~~~~-~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~~~ 120 (640)
.+.+||++|+|++||.+|+.||+++|+ +..|.|||.||..+|+|++.+.+|.+||+++|+++++++|++.++.++|++.
T Consensus 121 ~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~ 200 (606)
T KOG0547|consen 121 KGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFD 200 (606)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHH
Confidence 445889999999999999999999988 8889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCChHHHHHHHhHHHHHHHHhhhccchhhhhhcccccccccccCCCCCCCcchhhhhcCCCCCcccc
Q 006562 121 EALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDS 200 (640)
Q Consensus 121 ~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (640)
+|+....- +|+... +...+..-.+.+.+++......
T Consensus 201 eal~D~tv-------------------------------~ci~~~-------------F~n~s~~~~~eR~Lkk~a~~ka 236 (606)
T KOG0547|consen 201 EALFDVTV-------------------------------LCILEG-------------FQNASIEPMAERVLKKQAMKKA 236 (606)
T ss_pred HHHHhhhH-------------------------------HHHhhh-------------cccchhHHHHHHHHHHHHHHHH
Confidence 99954332 222221 0000000001111111000000
Q ss_pred ccCCccccccccCCCCCCCCc-ccccccccCCCcccccccccccCCccccccccCCCCCCCCccccccccchhhccccCC
Q 006562 201 SSQSRDVSETCSKSSHDPDLC-NGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSD 279 (640)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (640)
. +.. ....+.+|...++..+...|+......
T Consensus 237 ~-----------------e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~------------------------------- 268 (606)
T KOG0547|consen 237 K-----------------EKLKENRPPVLPSATFIASYFGSFHADPKPL------------------------------- 268 (606)
T ss_pred H-----------------HhhcccCCCCCCcHHHHHHHHhhcccccccc-------------------------------
Confidence 0 001 122333344344444443332211100
Q ss_pred cccccCCCCCcccccccCCcccccccccccccccCccCCCCCCCCcccccccccCCCCCC-chHHHHHhhHHHhhhhHHH
Q 006562 280 DFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSS-DSTESRSKLSFKWDMLKET 358 (640)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~ 358 (640)
......+.+ ...+.+..++......-..
T Consensus 269 ---------------------------------------------------~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~ 297 (606)
T KOG0547|consen 269 ---------------------------------------------------FDNKSDKSDAALAEALEALEKGLEEGYLK 297 (606)
T ss_pred ---------------------------------------------------ccCCCccchhhHHHHHHHHHhhCchhHHH
Confidence 000000000 1111112122111111000
Q ss_pred HHHHHhhHHHH-H-----hhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHH
Q 006562 359 SNEAKRNKKFC-V-----TRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELE 432 (640)
Q Consensus 359 ~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~ 432 (640)
........... . ..+...-..-+..+...|..++-.|++..|...|+.++.++|.+...+..+|.+|....+.+
T Consensus 298 a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~ 377 (606)
T KOG0547|consen 298 AYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSE 377 (606)
T ss_pred HHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccH
Confidence 10000000000 0 00000111226788889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 006562 433 AAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKL 512 (640)
Q Consensus 433 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 512 (640)
+....|.++..++|.++++|+..|++++-++++++|+..|++++.++|++...+..++.+.++++++++++..|+.+.+.
T Consensus 378 ~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk 457 (606)
T KOG0547|consen 378 KMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK 457 (606)
T ss_pred HHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcc------cHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCCh
Q 006562 513 DKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN------FLEAWGHLTQFYQ-DLANSEKALECLQQVLYIDKRFS 585 (640)
Q Consensus 513 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~ 585 (640)
.|+.++++...|.++..+++|++|++.|..++.+.|. ++..+...|.+.. ..+++..|+.+++++++++|...
T Consensus 458 FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce 537 (606)
T KOG0547|consen 458 FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCE 537 (606)
T ss_pred CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHH
Confidence 9999999999999999999999999999999999998 5555555554433 45899999999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHH
Q 006562 586 KAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE 620 (640)
Q Consensus 586 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 620 (640)
.++..+|.+..++|+.++|+++|+++..+..+..+
T Consensus 538 ~A~~tlaq~~lQ~~~i~eAielFEksa~lArt~~E 572 (606)
T KOG0547|consen 538 QAYETLAQFELQRGKIDEAIELFEKSAQLARTESE 572 (606)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHH
Confidence 99999999999999999999999999987665443
No 3
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=9.4e-41 Score=321.38 Aligned_cols=271 Identities=23% Similarity=0.277 Sum_probs=264.9
Q ss_pred HHhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Q 006562 369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA 448 (640)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 448 (640)
++.+++...|.-+-+|..+|..+..+|+...|+..|+++++++|+.+.+|+++|.+|...+.++.|+.+|.+++...|++
T Consensus 206 cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~ 285 (966)
T KOG4626|consen 206 CYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNH 285 (966)
T ss_pred HHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcc
Confidence 55566677788888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 006562 449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALS 528 (640)
Q Consensus 449 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 528 (640)
+.++.++|.+|+.+|..+-|+..|++++++.|..++++.++|..+-..|+..+|..+|.+++.+.|+.+.+.+++|.++.
T Consensus 286 A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~ 365 (966)
T KOG4626|consen 286 AVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYR 365 (966)
T ss_pred hhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 006562 529 SIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL 608 (640)
Q Consensus 529 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 608 (640)
.+|.+++|...|.++++..|....++.++|.+|.++|++++|+.+|+.++++.|..++++.++|..|..+|+...|+..|
T Consensus 366 E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y 445 (966)
T KOG4626|consen 366 EQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCY 445 (966)
T ss_pred HhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCCCCHHHHHHHHHHHHHcCCccccc
Q 006562 609 SSGLGIDPSNIECLYLRASCYHAIGEYREAV 639 (640)
Q Consensus 609 ~~al~~~p~~~~~~~~la~~~~~~g~~~~Al 639 (640)
.+++.++|...+++.+||.+|...|+..+||
T Consensus 446 ~rAI~~nPt~AeAhsNLasi~kDsGni~~AI 476 (966)
T KOG4626|consen 446 TRAIQINPTFAEAHSNLASIYKDSGNIPEAI 476 (966)
T ss_pred HHHHhcCcHHHHHHhhHHHHhhccCCcHHHH
Confidence 9999999999999999999999999999886
No 4
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=6.4e-38 Score=336.77 Aligned_cols=437 Identities=19% Similarity=0.188 Sum_probs=326.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHcccCchhHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHH
Q 006562 41 IELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKE 120 (640)
Q Consensus 41 ~~~~~~~~~~~y~~Ai~~y~~ai~~~~~~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~~~ 120 (640)
..+..+|..|+|++||.+|+++|.+.|++..|.++|.||.++|+|++|+.+|+++|+++|++.++++++|.+|..+|+++
T Consensus 132 ~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~ 211 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYA 211 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH
Confidence 44557899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCChHHHHHHHhHHHHHHHHhhhccchhhhhhcccccccccccCCCCCCCcchhhhhcCCCCCcccc
Q 006562 121 EALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDS 200 (640)
Q Consensus 121 ~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (640)
+|+..|..+..+.+-.......++............. ... ...+
T Consensus 212 eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~-----~~l------------------------~~~~------- 255 (615)
T TIGR00990 212 DALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAK-----EIL------------------------ETKP------- 255 (615)
T ss_pred HHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHH-----HHH------------------------hcCC-------
Confidence 9999998886665433322111111100000000000 000 0000
Q ss_pred ccCCccccccccCCCCCCCCcccccccccCCCcccccccccccCCccccccccCCCCCCCCccccccccchhhccccCCc
Q 006562 201 SSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDD 280 (640)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (640)
...+....+..+...+.....
T Consensus 256 -------------------------~~~~~~~~~~~~~~~~~~~~~---------------------------------- 276 (615)
T TIGR00990 256 -------------------------ENLPSVTFVGNYLQSFRPKPR---------------------------------- 276 (615)
T ss_pred -------------------------CCCCCHHHHHHHHHHccCCcc----------------------------------
Confidence 000000000000000000000
Q ss_pred ccccCCCCCcccccccCCcccccccccccccccCccCCCCCCCCcccccccccCCCCCCchHHHHHhhHHHhhhhHHHHH
Q 006562 281 FDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSN 360 (640)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 360 (640)
...++..... ......+...+ .... ......
T Consensus 277 ----------------------------------~~~~~~~~~~----------~~~~~~~~~~l---~~~~--~e~~~~ 307 (615)
T TIGR00990 277 ----------------------------------PAGLEDSNEL----------DEETGNGQLQL---GLKS--PESKAD 307 (615)
T ss_pred ----------------------------------hhhhhccccc----------ccccccchHHH---HHHH--HHhhhh
Confidence 0000000000 00000000000 0000 000000
Q ss_pred HHHhhHHHHHhhhhcc---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHH
Q 006562 361 EAKRNKKFCVTRISKS---KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISD 437 (640)
Q Consensus 361 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 437 (640)
+........+...... .|.....+..+|.+++..|++++|+..|+++++.+|.++.+++.+|.++...|++++|+..
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~ 387 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEED 387 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 1111222244444433 5777888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcH
Q 006562 438 FTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK 517 (640)
Q Consensus 438 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 517 (640)
|+++++.+|+++.++..+|.++...|++++|+..|++++.++|++..++..+|.++...|++++|+..+++++...|+++
T Consensus 388 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~ 467 (615)
T TIGR00990 388 FDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAP 467 (615)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHH------HHHHHHH-HHHhcCHHHHHHHHHHHHHhCCCChHHHHH
Q 006562 518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA------WGHLTQF-YQDLANSEKALECLQQVLYIDKRFSKAYHL 590 (640)
Q Consensus 518 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~------~~~la~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 590 (640)
.++..+|.++...|++++|+..|++++.+.|..... +...+.. +...|++++|+.++++++..+|++..++..
T Consensus 468 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~ 547 (615)
T TIGR00990 468 DVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVAT 547 (615)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 999999999999999999999999999998875332 2233333 344799999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccCCCCHHH
Q 006562 591 RGLLLHGLGQHKKAIKDLSSGLGIDPSNIEC 621 (640)
Q Consensus 591 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 621 (640)
+|.++..+|++++|+.+|++++++.+...+.
T Consensus 548 la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~ 578 (615)
T TIGR00990 548 MAQLLLQQGDVDEALKLFERAAELARTEGEL 578 (615)
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHhccHHHH
Confidence 9999999999999999999999998875553
No 5
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=4.3e-32 Score=309.95 Aligned_cols=450 Identities=16% Similarity=0.086 Sum_probs=352.8
Q ss_pred HHHhcCCHHHHHHHHHHHHccc-CchhHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHH
Q 006562 45 KLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEAL 123 (640)
Q Consensus 45 ~~~~~~~y~~Ai~~y~~ai~~~-~~~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~~~~A~ 123 (640)
.++..|++++|+..+.+.+... +++..+..+|.++...|++++|+..++++++.+|++..+++.+|.++...|++++|+
T Consensus 440 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~ 519 (899)
T TIGR02917 440 SYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAI 519 (899)
T ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 4568888889988888888877 455668888888888899999999888888888888888888888888888888999
Q ss_pred HHHHHHHhhccCChHHHHHHHhHHHHHHHHhhhccchhhhhhcccccccccccCCCCCCCcchhhhhcCCCCCccccccC
Q 006562 124 SVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQ 203 (640)
Q Consensus 124 ~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (640)
..|++++...|.....+..+..+................... .. +
T Consensus 520 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~---~------------------------------ 564 (899)
T TIGR02917 520 QRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAE--LN---P------------------------------ 564 (899)
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hC---c------------------------------
Confidence 888888888888776665555544332222111110000000 00 0
Q ss_pred CccccccccCCCCCCCCcccccccccCCCcccccccccccCCccccccccCCCCCCCCccccccccchhhccccCCcccc
Q 006562 204 SRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDI 283 (640)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (640)
.... ............+
T Consensus 565 ---------------~~~~----------~~~~l~~~~~~~~-------------------------------------- 581 (899)
T TIGR02917 565 ---------------QEIE----------PALALAQYYLGKG-------------------------------------- 581 (899)
T ss_pred ---------------cchh----------HHHHHHHHHHHCC--------------------------------------
Confidence 0000 0000000000000
Q ss_pred cCCCCCcccccccCCcccccccccccccccCccCCCCCCCCcccccccccC-CCCCCchHHHHHhhHHHhhhhHHHHHHH
Q 006562 284 CNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSIS-DNKSSDSTESRSKLSFKWDMLKETSNEA 362 (640)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 362 (640)
........ ....+. .+........+..+....+....
T Consensus 582 -------------------~~~~A~~~------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----- 619 (899)
T TIGR02917 582 -------------------QLKKALAI------------------LNEAADAAPDSPEAWLMLGRAQLAAGDLNK----- 619 (899)
T ss_pred -------------------CHHHHHHH------------------HHHHHHcCCCCHHHHHHHHHHHHHcCCHHH-----
Confidence 00000000 000000 00011111222222222222222
Q ss_pred HhhHHHHHhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 006562 363 KRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAI 442 (640)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 442 (640)
....+..+....|.++..+..+|.++...|++++|+..|+++++.+|++..++..++.++...|++++|+..++.+.
T Consensus 620 ---A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 696 (899)
T TIGR02917 620 ---AVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQ 696 (899)
T ss_pred ---HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 22245555666788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 006562 443 QSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTY 522 (640)
Q Consensus 443 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 522 (640)
...|.++..+..+|.++...|++++|+..|++++...|++ ..+..++.++...|++++|...+++++...|++..++..
T Consensus 697 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 775 (899)
T TIGR02917 697 KQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTA 775 (899)
T ss_pred hhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 9999999999999999999999999999999999999987 778889999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHH
Q 006562 523 LGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHK 602 (640)
Q Consensus 523 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~ 602 (640)
+|.++...|++++|+..|++++...|+++.++..++.++...|+ .+|+.++++++...|+++..+..+|.++...|+++
T Consensus 776 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 854 (899)
T TIGR02917 776 LAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEAD 854 (899)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHH
Confidence 99999999999999999999999999999999999999999999 88999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHHHcCCccccc
Q 006562 603 KAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAV 639 (640)
Q Consensus 603 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Al 639 (640)
+|+.+|+++++.+|.++.++..++.++...|++++|+
T Consensus 855 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 891 (899)
T TIGR02917 855 RALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEAR 891 (899)
T ss_pred HHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999999999999999999999986
No 6
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.2e-31 Score=304.20 Aligned_cols=450 Identities=16% Similarity=0.084 Sum_probs=359.0
Q ss_pred HHHhcCCHHHHHHHHHHHHcccCc-hhHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHH
Q 006562 45 KLCSLRNWSKAIRILDSLLAQSYE-IQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEAL 123 (640)
Q Consensus 45 ~~~~~~~y~~Ai~~y~~ai~~~~~-~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~~~~A~ 123 (640)
-++..|++++|+..|.+++...|+ .......+.++.+.|++++|+..+++.+...|+++..+..+|.+|...|++++|+
T Consensus 406 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 485 (899)
T TIGR02917 406 SKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAR 485 (899)
T ss_pred HHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHH
Confidence 457899999999999999999844 4557788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCChHHHHHHHhHHHHHHHHhhhccchhhhhhcccccccccccCCCCCCCcchhhhhcCCCCCccccccC
Q 006562 124 SVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQ 203 (640)
Q Consensus 124 ~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (640)
..|++++++.|..+..+..+..+.........+......... .. +
T Consensus 486 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~-----------------------~---------- 530 (899)
T TIGR02917 486 EAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLT--ID-----------------------P---------- 530 (899)
T ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hC-----------------------c----------
Confidence 999999999999887766555444332222111100000000 00 0
Q ss_pred CccccccccCCCCCCCCcccccccccCCCcccccccccccCCccccccccCCCCCCCCccccccccchhhccccCCcccc
Q 006562 204 SRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDI 283 (640)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (640)
... .............+
T Consensus 531 ---------------~~~----------~~~~~l~~~~~~~~-------------------------------------- 547 (899)
T TIGR02917 531 ---------------KNL----------RAILALAGLYLRTG-------------------------------------- 547 (899)
T ss_pred ---------------CcH----------HHHHHHHHHHHHcC--------------------------------------
Confidence 000 00000000000000
Q ss_pred cCCCCCcccccccCCcccccccccccccccCccCCCCCCCCcccccccccC-CCCCCchHHHHHhhHHHhhhhHHHHHHH
Q 006562 284 CNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSIS-DNKSSDSTESRSKLSFKWDMLKETSNEA 362 (640)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 362 (640)
........+. ..+. .+........+.......+....
T Consensus 548 -------------------~~~~A~~~~~------------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~----- 585 (899)
T TIGR02917 548 -------------------NEEEAVAWLE------------------KAAELNPQEIEPALALAQYYLGKGQLKK----- 585 (899)
T ss_pred -------------------CHHHHHHHHH------------------HHHHhCccchhHHHHHHHHHHHCCCHHH-----
Confidence 0000000000 0000 00000011111111111121111
Q ss_pred HhhHHHHHhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 006562 363 KRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAI 442 (640)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 442 (640)
....+.......|.++..+..+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++
T Consensus 586 ---A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 662 (899)
T TIGR02917 586 ---ALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRAL 662 (899)
T ss_pred ---HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 12234455566788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 006562 443 QSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTY 522 (640)
Q Consensus 443 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 522 (640)
+..|++..++..++.++...|++++|+..++.+....|.++..+..+|.++...|++++|+..|++++...|++ ..+..
T Consensus 663 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~ 741 (899)
T TIGR02917 663 ELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIK 741 (899)
T ss_pred hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987 77888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHH
Q 006562 523 LGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHK 602 (640)
Q Consensus 523 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~ 602 (640)
++.++...|++++|...+++++...|+++.++..+|.++...|++++|+..|+++++..|+++.++..+|.++...|+ .
T Consensus 742 l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~ 820 (899)
T TIGR02917 742 LHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-P 820 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-H
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999 8
Q ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHHHcCCccccc
Q 006562 603 KAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAV 639 (640)
Q Consensus 603 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Al 639 (640)
+|+.++++++...|+++..+..+|.++...|++++|+
T Consensus 821 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 857 (899)
T TIGR02917 821 RALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRAL 857 (899)
T ss_pred HHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHH
Confidence 8999999999999999999999999999999999986
No 7
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-32 Score=259.45 Aligned_cols=460 Identities=19% Similarity=0.158 Sum_probs=328.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHccc-CchhHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcC
Q 006562 39 ARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALG 117 (640)
Q Consensus 39 ~~~~~~~~~~~~~y~~Ai~~y~~ai~~~-~~~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g 117 (640)
.+.++..+|..|||+.||.+|++||.++ +|+..|.||..||..+|+|++|+.+..++++++|.++++|.++|.++.-+|
T Consensus 5 ~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg 84 (539)
T KOG0548|consen 5 LKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLG 84 (539)
T ss_pred HHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcc
Confidence 3445556699999999999999999999 888889999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhccCChHHHHHHHhHHHHHHHHhhhccchhhhhhcccccccccccCCCCCCCcchhhhhcCCCCCc
Q 006562 118 RKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDI 197 (640)
Q Consensus 118 ~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (640)
+|++|+..|..+|+..|+...-..++.+........ .........+....+++....
T Consensus 85 ~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~-----------------------~~~~~~p~~~~~l~~~p~t~~ 141 (539)
T KOG0548|consen 85 DYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAA-----------------------DQLFTKPYFHEKLANLPLTNY 141 (539)
T ss_pred cHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHh-----------------------hhhccCcHHHHHhhcChhhhh
Confidence 999999999999777776655444444433111000 011112222333333333322
Q ss_pred cccccCCccccccccCCCCCCCCcccccccccCCCcccccccccccCCccccccccCCCCCCCCccccccccchhhcccc
Q 006562 198 CDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQS 277 (640)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (640)
...+ +.+..+......+|..++.++.+.+.......+. +++... +....+
T Consensus 142 ~~~~---~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~-~~~~~~----------------------~~~~~~---- 191 (539)
T KOG0548|consen 142 SLSD---PAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLK-GVDELL----------------------FYASGI---- 191 (539)
T ss_pred hhcc---HHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHh-cCcccc----------------------cccccc----
Confidence 2222 4555555555555555555555333322222221 110000 000000
Q ss_pred CCcccccCCCCCcccccccCCcccccccccccccccCccCCCCCCCCcccccccccCCCCCCchH-HHHHhhHHHhhhhH
Q 006562 278 SDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDST-ESRSKLSFKWDMLK 356 (640)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~~~~~~~~~~~~ 356 (640)
....+. ..+. . ....+...+ .......
T Consensus 192 ---------------------------------~~~~~~-------~~p~-~----~~~~~~~~~~d~~ee~~------- 219 (539)
T KOG0548|consen 192 ---------------------------------EILASM-------AEPC-K----QEHNGFPIIEDNTEERR------- 219 (539)
T ss_pred ---------------------------------ccCCCC-------CCcc-c----ccCCCCCccchhHHHHH-------
Confidence 000000 0000 0 000000000 0000000
Q ss_pred HHHHHHHhhHHHHHhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHH
Q 006562 357 ETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAIS 436 (640)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~ 436 (640)
.-......-.+|...+...+|..|++.|..+++++ .+...+...+.+|+..|.+...+.
T Consensus 220 --------------------~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~ 278 (539)
T KOG0548|consen 220 --------------------VKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIE 278 (539)
T ss_pred --------------------HHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhc
Confidence 00003344578899999999999999999999999 888888999999999999999999
Q ss_pred HHHHHHHhCCCcH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006562 437 DFTEAIQSNPSAG-------EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509 (640)
Q Consensus 437 ~~~~al~~~p~~~-------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 509 (640)
....+++...... .+...+|..|...++++.|+.+|.+++...-. ..+.-+....++++......
T Consensus 279 ~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt--------~~~ls~lk~~Ek~~k~~e~~ 350 (539)
T KOG0548|consen 279 LCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT--------PDLLSKLKEAEKALKEAERK 350 (539)
T ss_pred chHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC--------HHHHHHHHHHHHHHHHHHHH
Confidence 9998887655432 23444677888889999999999998765543 45555666778888888887
Q ss_pred HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHH
Q 006562 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYH 589 (640)
Q Consensus 510 l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 589 (640)
.-.+|.-..--..-|..++..|+|..|+..|.+++..+|+++..|.+.|.+|..+|.+..|+...+.+++++|+...+|.
T Consensus 351 a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~ 430 (539)
T KOG0548|consen 351 AYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYL 430 (539)
T ss_pred HhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHH
Confidence 77888777777777999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHc
Q 006562 590 LRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAI 632 (640)
Q Consensus 590 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 632 (640)
..|.++..+.+|++|++.|+++++.+|++.++...+..|...+
T Consensus 431 RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 431 RKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999998888888887753
No 8
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=2.2e-30 Score=296.10 Aligned_cols=270 Identities=16% Similarity=0.086 Sum_probs=221.9
Q ss_pred HhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHH---------------------------
Q 006562 370 VTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRG--------------------------- 422 (640)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la--------------------------- 422 (640)
+.++...+|.++..++.+|.++...|++++|+..|+++++.+|++..++..++
T Consensus 374 ~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~ 453 (1157)
T PRK11447 374 YQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSID 453 (1157)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHH
Confidence 33444456677777777788888888888888888888877777766554444
Q ss_pred ---------------HHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 006562 423 ---------------TARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILH 487 (640)
Q Consensus 423 ---------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 487 (640)
.++...|++++|+..|+++++.+|+++.+++.+|.+|...|++++|+..+++++...|.++..++
T Consensus 454 ~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~ 533 (1157)
T PRK11447 454 DIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVY 533 (1157)
T ss_pred HHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 34445788888888888888888888888888888888889999999999888888888888877
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH----------------------------------------HHhCCCcHHHHHHHHHHH
Q 006562 488 ERGIVNFKFKDFNAAVEDLSAC----------------------------------------VKLDKENKSAYTYLGLAL 527 (640)
Q Consensus 488 ~la~~~~~~~~~~~A~~~~~~a----------------------------------------l~~~~~~~~~~~~la~~~ 527 (640)
.++.++...+++++|+..++++ ++..|.++..+..+|.++
T Consensus 534 a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~ 613 (1157)
T PRK11447 534 AYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWA 613 (1157)
T ss_pred HHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 7777777777777776665432 234677888889999999
Q ss_pred HHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 006562 528 SSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKD 607 (640)
Q Consensus 528 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 607 (640)
...|++++|+..|++++..+|+++.++..++.++...|++++|+..+++++...|+++.++..+|.++...|++++|+..
T Consensus 614 ~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~ 693 (1157)
T PRK11447 614 QQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRT 693 (1157)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCCCCH------HHHHHHHHHHHHcCCccccc
Q 006562 608 LSSGLGIDPSNI------ECLYLRASCYHAIGEYREAV 639 (640)
Q Consensus 608 ~~~al~~~p~~~------~~~~~la~~~~~~g~~~~Al 639 (640)
|++++...|+++ .++..+|.++...|++++|+
T Consensus 694 ~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~ 731 (1157)
T PRK11447 694 FNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQAL 731 (1157)
T ss_pred HHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHH
Confidence 999998766543 45666799999999998886
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=2.5e-30 Score=295.69 Aligned_cols=253 Identities=15% Similarity=0.078 Sum_probs=158.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH-------
Q 006562 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR------- 459 (640)
Q Consensus 387 ~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~------- 459 (640)
.|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|.+..++..++.++
T Consensus 357 ~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~ 436 (1157)
T PRK11447 357 QGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEK 436 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHH
Confidence 3455555555555555555555555555555555555555555666666666665555555555554444332
Q ss_pred -----------------------------------HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006562 460 -----------------------------------AALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504 (640)
Q Consensus 460 -----------------------------------~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~ 504 (640)
...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+.
T Consensus 437 A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~ 516 (1157)
T PRK11447 437 ALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADA 516 (1157)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 123555555555555555555555555555555555555555555
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH----------------------------------------H
Q 006562 505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKA----------------------------------------I 544 (640)
Q Consensus 505 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a----------------------------------------~ 544 (640)
.+++++...|+++..++.++..+...+++++|+..++++ +
T Consensus 517 ~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l 596 (1157)
T PRK11447 517 LMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALL 596 (1157)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence 555555555555555555555555555555555554432 1
Q ss_pred ccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHH
Q 006562 545 QLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYL 624 (640)
Q Consensus 545 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 624 (640)
...|.++..+..+|.++...|++++|+..|+++++.+|+++.++..++.++...|++++|+..++++++..|+++.++..
T Consensus 597 ~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~ 676 (1157)
T PRK11447 597 RQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRR 676 (1157)
T ss_pred HhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHH
Confidence 12344445566677777777777777777777777777777777777877777788888888887777777777777777
Q ss_pred HHHHHHHcCCccccc
Q 006562 625 RASCYHAIGEYREAV 639 (640)
Q Consensus 625 la~~~~~~g~~~~Al 639 (640)
+|.++..+|++++|+
T Consensus 677 la~~~~~~g~~~eA~ 691 (1157)
T PRK11447 677 VALAWAALGDTAAAQ 691 (1157)
T ss_pred HHHHHHhCCCHHHHH
Confidence 777777777777764
No 10
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=100.00 E-value=1.3e-29 Score=271.26 Aligned_cols=329 Identities=10% Similarity=0.021 Sum_probs=212.2
Q ss_pred HHHhcCCHHHHHHHHHHHHcccCch-hHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHH
Q 006562 45 KLCSLRNWSKAIRILDSLLAQSYEI-QDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEAL 123 (640)
Q Consensus 45 ~~~~~~~y~~Ai~~y~~ai~~~~~~-~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~~~~A~ 123 (640)
.+.++|++.+|+..+...+...|++ ..++.++.+.+..|++++|+..+++++..+|+++.++..+|.++...|++++|+
T Consensus 51 ~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai 130 (656)
T PRK15174 51 ACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVA 130 (656)
T ss_pred HHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHH
Confidence 5689999999999999999999555 558899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCChHHHHHHHhHHHHHHHHhhhccchhhhhhcccccccccccCCCCCCCcchhhhhcCCCCCccccccC
Q 006562 124 SVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQ 203 (640)
Q Consensus 124 ~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (640)
..|++++++.|..+..+..+..+..
T Consensus 131 ~~l~~Al~l~P~~~~a~~~la~~l~------------------------------------------------------- 155 (656)
T PRK15174 131 DLAEQAWLAFSGNSQIFALHLRTLV------------------------------------------------------- 155 (656)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHH-------------------------------------------------------
Confidence 9999997776655433221111100
Q ss_pred CccccccccCCCCCCCCcccccccccCCCcccccccccccCCccccccccCCCCCCCCccccccccchhhccccCCcccc
Q 006562 204 SRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDI 283 (640)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (640)
T Consensus 156 -------------------------------------------------------------------------------- 155 (656)
T PRK15174 156 -------------------------------------------------------------------------------- 155 (656)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCcccccccCCcccccccccccccccCccCCCCCCCCcccccccccCCCCCCchHHHHHhhHHHhhhhHHHHHHHH
Q 006562 284 CNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAK 363 (640)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 363 (640)
..++++++...+.
T Consensus 156 --------------------------------------------------~~g~~~eA~~~~~----------------- 168 (656)
T PRK15174 156 --------------------------------------------------LMDKELQAISLAR----------------- 168 (656)
T ss_pred --------------------------------------------------HCCChHHHHHHHH-----------------
Confidence 0111122211111
Q ss_pred hhHHHHHhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 006562 364 RNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPM-YPEALIGRGTARAFQRELEAAISDFTEAI 442 (640)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al 442 (640)
.+....|.++..+...+ .++..|++++|+..+++++..+|. .......++.++...|++++|+..+++++
T Consensus 169 --------~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al 239 (656)
T PRK15174 169 --------TQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESAL 239 (656)
T ss_pred --------HHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 11122333344333332 355566666666666666555432 22333344555566666666666666666
Q ss_pred HhCCCcHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHH
Q 006562 443 QSNPSAGEAWKRRGQARAALGESVE----AIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKS 518 (640)
Q Consensus 443 ~~~p~~~~~~~~la~~~~~~~~~~~----A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~ 518 (640)
...|+++.++..+|.++...|++++ |+..|++++..+|++..++..+|.++...|++++|+..+++++..+|+++.
T Consensus 240 ~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~ 319 (656)
T PRK15174 240 ARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPY 319 (656)
T ss_pred hcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 6666666666666666666666653 566666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Q 006562 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF 584 (640)
Q Consensus 519 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 584 (640)
++..+|.++...|++++|+..|++++..+|..+..+..+|.++...|++++|+..|+++++..|++
T Consensus 320 a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 320 VRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence 666666666666666666666666666666555555555566666666666666666666665554
No 11
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=6.1e-29 Score=267.40 Aligned_cols=245 Identities=16% Similarity=0.172 Sum_probs=214.0
Q ss_pred hHHHHHhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 006562 365 NKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444 (640)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 444 (640)
.....+..++..+|.....++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+.+|++++..
T Consensus 349 eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l 428 (615)
T TIGR00990 349 EALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL 428 (615)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 34445777788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHH-----
Q 006562 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSA----- 519 (640)
Q Consensus 445 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~----- 519 (640)
+|++..++..+|.++...|++++|+..|++++...|.++.++..+|.++...|++++|+..|++++.+.|.....
T Consensus 429 ~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~ 508 (615)
T TIGR00990 429 DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVL 508 (615)
T ss_pred CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999875332
Q ss_pred -HHHHHHHHH-HcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh
Q 006562 520 -YTYLGLALS-SIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG 597 (640)
Q Consensus 520 -~~~la~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 597 (640)
+...+..++ ..|++++|+..+++++..+|++..++..+|.++...|++++|+.+|++++++.+.....+ .
T Consensus 509 ~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~~--------~ 580 (615)
T TIGR00990 509 PLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGELV--------Q 580 (615)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHHH--------H
Confidence 223333343 479999999999999999999999999999999999999999999999999987654422 2
Q ss_pred cCCHHHHHHHHHHhhccCCC
Q 006562 598 LGQHKKAIKDLSSGLGIDPS 617 (640)
Q Consensus 598 ~g~~~~A~~~~~~al~~~p~ 617 (640)
...+.+|.....+..+..|.
T Consensus 581 a~~~~~a~~~~~~~~~~~~~ 600 (615)
T TIGR00990 581 AISYAEATRTQIQVQEDYPV 600 (615)
T ss_pred HHHHHHHHHHHHHHHHHhHH
Confidence 22444566655555554443
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.98 E-value=1.1e-28 Score=263.96 Aligned_cols=383 Identities=13% Similarity=0.005 Sum_probs=322.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHccc----CchhHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcC
Q 006562 42 ELAKLCSLRNWSKAIRILDSLLAQS----YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALG 117 (640)
Q Consensus 42 ~~~~~~~~~~y~~Ai~~y~~ai~~~----~~~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g 117 (640)
.-..++++.||+.---+++.+-+.. .+......-+..+++.|++.+|+..++.++...|+++.+++.+|.+.+..|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g 90 (656)
T PRK15174 11 SPTTLLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASS 90 (656)
T ss_pred CchhhhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcC
Confidence 3345677888877666666665554 222335667889999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhccCChHHHHHHHhHHHHHHHHhhhccchhhhhhcccccccccccCCCCCCCcchhhhhcCCCCCc
Q 006562 118 RKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDI 197 (640)
Q Consensus 118 ~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (640)
++++|+..|+++++++|+.+..+..+..+..
T Consensus 91 ~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~------------------------------------------------- 121 (656)
T PRK15174 91 QPDAVLQVVNKLLAVNVCQPEDVLLVASVLL------------------------------------------------- 121 (656)
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-------------------------------------------------
Confidence 9999999999999988888665432211100
Q ss_pred cccccCCccccccccCCCCCCCCcccccccccCCCcccccccccccCCccccccccCCCCCCCCccccccccchhhcccc
Q 006562 198 CDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQS 277 (640)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (640)
T Consensus 122 -------------------------------------------------------------------------------- 121 (656)
T PRK15174 122 -------------------------------------------------------------------------------- 121 (656)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccccCCCCCcccccccCCcccccccccccccccCccCCCCCCCCcccccccccCCCCCCchHHHHHhhHHHhhhhHH
Q 006562 278 SDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKE 357 (640)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 357 (640)
..++++.|+.
T Consensus 122 --------------------------------------------------------~~g~~~~Ai~-------------- 131 (656)
T PRK15174 122 --------------------------------------------------------KSKQYATVAD-------------- 131 (656)
T ss_pred --------------------------------------------------------HcCCHHHHHH--------------
Confidence 1112223322
Q ss_pred HHHHHHhhHHHHHhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHH
Q 006562 358 TSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISD 437 (640)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 437 (640)
.+.+.....|.++..+..+|.++...|++++|+..+++++...|+++.++..++ .+...|++++|+..
T Consensus 132 -----------~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~ 199 (656)
T PRK15174 132 -----------LAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDL 199 (656)
T ss_pred -----------HHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHH
Confidence 233444567888999999999999999999999999999999999998887765 47889999999999
Q ss_pred HHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHh
Q 006562 438 FTEAIQSNPS-AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNA----AVEDLSACVKL 512 (640)
Q Consensus 438 ~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~----A~~~~~~al~~ 512 (640)
+++++...|. .......++.++...|++++|+..+++++...|+++.++..+|.++...|++++ |+..+++++..
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l 279 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF 279 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh
Confidence 9999998764 344555678899999999999999999999999999999999999999999986 89999999999
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 006562 513 DKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRG 592 (640)
Q Consensus 513 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la 592 (640)
+|++..++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..|++++...|..+..+..+|
T Consensus 280 ~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a 359 (656)
T PRK15174 280 NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAA 359 (656)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888888889
Q ss_pred HHHHhcCCHHHHHHHHHHhhccCCCCH-----HHHHHHHHHHHHcCCc
Q 006562 593 LLLHGLGQHKKAIKDLSSGLGIDPSNI-----ECLYLRASCYHAIGEY 635 (640)
Q Consensus 593 ~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~ 635 (640)
.++...|++++|+..|+++++.+|++. ++...+...+...+..
T Consensus 360 ~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~~~~~~~~~~~~~~ 407 (656)
T PRK15174 360 AALLQAGKTSEAESVFEHYIQARASHLPQSFEEGLLALDGQISAVNLP 407 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHHHHHHHHHHhcCCc
Confidence 999999999999999999999998865 3444455555555444
No 13
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.5e-28 Score=231.59 Aligned_cols=257 Identities=22% Similarity=0.287 Sum_probs=229.7
Q ss_pred HHHHHHHHHHHcC---ChHHHHHHHHHHHHhC----CCC---------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 006562 383 FRLSRGIAQVNEG---KYASAISIFDQILKED----PMY---------PEALIGRGTARAFQRELEAAISDFTEAIQSNP 446 (640)
Q Consensus 383 ~~~~~a~~~~~~g---~~~~A~~~~~~~l~~~----~~~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 446 (640)
....-+..++..+ .|..|...+.+..... ..+ ..++...|..++-.|++..|...|+.++.++|
T Consensus 278 a~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~ 357 (606)
T KOG0547|consen 278 AALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDP 357 (606)
T ss_pred hhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCc
Confidence 3333333444444 6788888777665421 112 67888899999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 006562 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA 526 (640)
Q Consensus 447 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~ 526 (640)
.+...|..+|.+|...++.++-...|.++..++|+++++|+..|.+++-++++++|+..|+++++++|++...+..++.+
T Consensus 358 ~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a 437 (606)
T KOG0547|consen 358 AFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCA 437 (606)
T ss_pred ccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHH-hcC
Q 006562 527 LSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKR------FSKAYHLRGLLLH-GLG 599 (640)
Q Consensus 527 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~-~~g 599 (640)
.+++++++++...|+.+....|+.++++...|.++..++++++|++.|.+++++.|. ++..+...|.+.. ..+
T Consensus 438 ~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~ 517 (606)
T KOG0547|consen 438 LYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKE 517 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhh
Confidence 999999999999999999999999999999999999999999999999999999998 5555555555433 468
Q ss_pred CHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCCccccc
Q 006562 600 QHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAV 639 (640)
Q Consensus 600 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Al 639 (640)
++..|+..+.++++++|....++..||.+..++|+.++||
T Consensus 518 d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAi 557 (606)
T KOG0547|consen 518 DINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAI 557 (606)
T ss_pred hHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHH
Confidence 9999999999999999999999999999999999999987
No 14
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.97 E-value=3.4e-28 Score=265.29 Aligned_cols=266 Identities=11% Similarity=-0.040 Sum_probs=243.1
Q ss_pred HhhhhccCcc--cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 006562 370 VTRISKSKSI--SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS 447 (640)
Q Consensus 370 ~~~~~~~~~~--~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 447 (640)
+..+....|. ++..++.+|.++.. +++.+|+..+.+++...|++. ....+|.++...|++++|+..|+++....|.
T Consensus 464 ~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~ 541 (987)
T PRK09782 464 IVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMS 541 (987)
T ss_pred HHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCC
Confidence 3444556677 89999999999987 899999999999999999854 4777788888999999999999998877555
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 006562 448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLAL 527 (640)
Q Consensus 448 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 527 (640)
+ ..+..+|.++...|++++|+.++++++...|.....+..++......|++++|+..++++++.+|+ +.++..+|.++
T Consensus 542 ~-~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l 619 (987)
T PRK09782 542 N-EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIY 619 (987)
T ss_pred c-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHH
Confidence 4 557788999999999999999999999999998887777777777889999999999999999996 89999999999
Q ss_pred HHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 006562 528 SSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKD 607 (640)
Q Consensus 528 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 607 (640)
...|++++|+..|++++..+|+++.++.++|.++...|++++|+..|+++++..|+++.++..+|.++...|++++|+..
T Consensus 620 ~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~ 699 (987)
T PRK09782 620 RQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHY 699 (987)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCCCCHHHHHHHHHHHHHcCCccccc
Q 006562 608 LSSGLGIDPSNIECLYLRASCYHAIGEYREAV 639 (640)
Q Consensus 608 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~Al 639 (640)
|+++++++|++..+....|++.....+++.|.
T Consensus 700 l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~ 731 (987)
T PRK09782 700 ARLVIDDIDNQALITPLTPEQNQQRFNFRRLH 731 (987)
T ss_pred HHHHHhcCCCCchhhhhhhHHHHHHHHHHHHH
Confidence 99999999999999999999998888777653
No 15
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1e-26 Score=236.89 Aligned_cols=459 Identities=15% Similarity=0.142 Sum_probs=320.7
Q ss_pred HHHhcCCHHHHHHHHHHHHccc-Cchh---HHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHHcCCH
Q 006562 45 KLCSLRNWSKAIRILDSLLAQS-YEIQ---DICNRAFCYSQLELHKHVIRDCDKALQLDPTL-LQAYILKGCAFSALGRK 119 (640)
Q Consensus 45 ~~~~~~~y~~Ai~~y~~ai~~~-~~~~---~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~-~~a~~~~g~~y~~~g~~ 119 (640)
.||-.|||..+..++..+|... ..+. .||..|++|..+|+|++|...|..+++.+|++ .-+++.+|+.|...|.+
T Consensus 279 ~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dl 358 (1018)
T KOG2002|consen 279 HFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDL 358 (1018)
T ss_pred HHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchH
Confidence 5679999999999999999877 3333 38999999999999999999999999999998 77999999999999999
Q ss_pred HHHHHHHHHHHhhccCChHHHHHHHhHHHHHHHHh--hhccchhhhhhcccccccccccCCCCCCCcchhhhhcCCCCCc
Q 006562 120 EEALSVWEKGYEHALHQSADLKQFLELEELLTAAK--QDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDI 197 (640)
Q Consensus 120 ~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (640)
++|+.+|++.++..|+..+...-+..++....... ..........+...
T Consensus 359 e~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~----------------------------- 409 (1018)
T KOG2002|consen 359 EESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ----------------------------- 409 (1018)
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc-----------------------------
Confidence 99999999999999988877665555544331000 00000000000000
Q ss_pred cccccCCccccccccCCCCCCCCcccccccccCCCcccccccccccCCccccccccCCCCCCCCccccccccchhhcccc
Q 006562 198 CDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQS 277 (640)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (640)
.+.. +..+..+...
T Consensus 410 ------------------------------~~~d-----------------------------------~~a~l~laql- 423 (1018)
T KOG2002|consen 410 ------------------------------TPVD-----------------------------------SEAWLELAQL- 423 (1018)
T ss_pred ------------------------------cccc-----------------------------------HHHHHHHHHH-
Confidence 0000 0000000000
Q ss_pred CCcccccCCCCCcccccccCCcccccccccccccccCccCCCCCCCCcccccccccCCCCC--CchHHHHHhhHHHhhhh
Q 006562 278 SDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKS--SDSTESRSKLSFKWDML 355 (640)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~a~~~~~~~~~~~~~~ 355 (640)
... ++....++.+..+ .......+.. .+.+..+..+....+..
T Consensus 424 -----~e~----------------~d~~~sL~~~~~A--------------~d~L~~~~~~ip~E~LNNvaslhf~~g~~ 468 (1018)
T KOG2002|consen 424 -----LEQ----------------TDPWASLDAYGNA--------------LDILESKGKQIPPEVLNNVASLHFRLGNI 468 (1018)
T ss_pred -----HHh----------------cChHHHHHHHHHH--------------HHHHHHcCCCCCHHHHHhHHHHHHHhcCh
Confidence 000 0000000000000 0000112222 22222223333333333
Q ss_pred HHHHHHHHhhHHHHHhhhhccC--cccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHH
Q 006562 356 KETSNEAKRNKKFCVTRISKSK--SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEA 433 (640)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~ 433 (640)
+.+..-.......+........ ..+....|++|.++-..+++..|.+.|..++..+|....++..+|......++..+
T Consensus 469 ~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~e 548 (1018)
T KOG2002|consen 469 EKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYE 548 (1018)
T ss_pred HHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHH
Confidence 3333222222222121111111 23445677888888888888888888888888888888888888877777778888
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHh------------cCCH
Q 006562 434 AISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEP--NSADILHERGIVNFK------------FKDF 499 (640)
Q Consensus 434 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~------------~~~~ 499 (640)
|...+..++..+..+++++..+|.++....+|..|..-|...+.... .++.+...+|++++. .+.+
T Consensus 549 a~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~ 628 (1018)
T KOG2002|consen 549 ASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQ 628 (1018)
T ss_pred HHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHH
Confidence 88888888888888888888888888888888888877766665432 345566677776654 3457
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 006562 500 NAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLY 579 (640)
Q Consensus 500 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 579 (640)
++|+..|.+++..+|.|..+-..+|.++...|++.+|...|.++.+...+++.+|.++|.||..+|+|..|++.|+.+++
T Consensus 629 ~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lk 708 (1018)
T KOG2002|consen 629 EKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLK 708 (1018)
T ss_pred HHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999888777889999999999999999999999999997
Q ss_pred hCC--CChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHcC
Q 006562 580 IDK--RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIG 633 (640)
Q Consensus 580 ~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 633 (640)
..- +++.+...||.+++..|.+.+|..++.+++...|.++.+.+++|.+..+.+
T Consensus 709 kf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla 764 (1018)
T KOG2002|consen 709 KFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLA 764 (1018)
T ss_pred HhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHH
Confidence 643 568899999999999999999999999999999999999999998887654
No 16
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.96 E-value=8.4e-26 Score=230.22 Aligned_cols=261 Identities=20% Similarity=0.194 Sum_probs=235.0
Q ss_pred CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 006562 377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY-PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR 455 (640)
Q Consensus 377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 455 (640)
.+.-.+.++.+|..+..+|+|++|..+|.++++.+|++ .-.++++|..|...|+++.|..+|+++++..|++.+....+
T Consensus 303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iL 382 (1018)
T KOG2002|consen 303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKIL 382 (1018)
T ss_pred hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 34457789999999999999999999999999999998 78899999999999999999999999999999999999999
Q ss_pred HHHHHHcC----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCCcHHHHHHHHHH
Q 006562 456 GQARAALG----ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKL-----DKENKSAYTYLGLA 526 (640)
Q Consensus 456 a~~~~~~~----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~la~~ 526 (640)
|.+|...+ ..+.|..++.++++..|.+.++|..++.++....-+.. +..|..|+.. .+--++.+.++|..
T Consensus 383 G~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvasl 461 (1018)
T KOG2002|consen 383 GCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASL 461 (1018)
T ss_pred HhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHH
Confidence 99999886 67889999999999999999999999999877666555 9999988843 23457899999999
Q ss_pred HHHcCCHHHHHHHHHHHHcc-----Cccc-----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 006562 527 LSSIGEYKKAEEAHLKAIQL-----DRNF-----LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLH 596 (640)
Q Consensus 527 ~~~~g~~~~A~~~~~~a~~~-----~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 596 (640)
++..|++.+|...|.++... +++. ....+++|.++...++++.|.+.|..++...|....++..+|.+..
T Consensus 462 hf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~ 541 (1018)
T KOG2002|consen 462 HFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMAR 541 (1018)
T ss_pred HHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHH
Confidence 99999999999999999876 1221 3357999999999999999999999999999999999999998888
Q ss_pred hcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCCcccc
Q 006562 597 GLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREA 638 (640)
Q Consensus 597 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 638 (640)
..++..+|..++..++..+..++.+|..+|.++.....+..|
T Consensus 542 ~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a 583 (1018)
T KOG2002|consen 542 DKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPA 583 (1018)
T ss_pred hccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhccc
Confidence 999999999999999999999999999999999887766544
No 17
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.96 E-value=9.2e-26 Score=246.94 Aligned_cols=226 Identities=11% Similarity=-0.018 Sum_probs=191.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHH--HHH-----HHHHHHccCHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHcCCHHHHH
Q 006562 398 ASAISIFDQILKEDPMYPEAL--IGR-----GTARAFQRELEAAISDFTEAIQSNPSAG-EAWKRRGQARAALGESVEAI 469 (640)
Q Consensus 398 ~~A~~~~~~~l~~~~~~~~~~--~~l-----a~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~~~~~~A~ 469 (640)
++|+..++.+++..|.++... +.. ...+...|++++|+..|+++++..|..+ .+...+|.+|...|++++|+
T Consensus 213 d~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~ 292 (765)
T PRK10049 213 DRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQ 292 (765)
T ss_pred HHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHH
Confidence 788999999997755544332 111 2234677999999999999998864422 34444689999999999999
Q ss_pred HHHHHHHHhCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC---------------cHHHHHHHHHHHHHc
Q 006562 470 QDLSKALEFEPNS----ADILHERGIVNFKFKDFNAAVEDLSACVKLDKE---------------NKSAYTYLGLALSSI 530 (640)
Q Consensus 470 ~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~---------------~~~~~~~la~~~~~~ 530 (640)
..|++++...|.+ ......++.++...|++++|+..++++....|. ...++..++.++...
T Consensus 293 ~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~ 372 (765)
T PRK10049 293 SILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYS 372 (765)
T ss_pred HHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHc
Confidence 9999999888765 356677788889999999999999999988763 135677899999999
Q ss_pred CCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006562 531 GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSS 610 (640)
Q Consensus 531 g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 610 (640)
|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++..+|++..+++.+|.++...|++++|...+++
T Consensus 373 g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ 452 (765)
T PRK10049 373 NDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDD 452 (765)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCHHHHH
Q 006562 611 GLGIDPSNIECLY 623 (640)
Q Consensus 611 al~~~p~~~~~~~ 623 (640)
+++..|+++.+..
T Consensus 453 ll~~~Pd~~~~~~ 465 (765)
T PRK10049 453 VVAREPQDPGVQR 465 (765)
T ss_pred HHHhCCCCHHHHH
Confidence 9999999986554
No 18
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=1.1e-26 Score=228.58 Aligned_cols=297 Identities=16% Similarity=0.174 Sum_probs=241.3
Q ss_pred HHHHhhHHHhhhhHHHHHHHH-hhHHHHHhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHH
Q 006562 343 ESRSKLSFKWDMLKETSNEAK-RNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGR 421 (640)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l 421 (640)
..+..+...++.......... ..+.-.+..+....+....++..+|..|+..++|++|..+|+.+-+..|-..+..-..
T Consensus 314 ~~l~~llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiy 393 (638)
T KOG1126|consen 314 SELMELLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIY 393 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHH
Confidence 334444444444433333333 3333445556667777788999999999999999999999999999988877777777
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Q 006562 422 GTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNA 501 (640)
Q Consensus 422 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~ 501 (640)
..+++.+.+--+--.+.+..+..+|+.|+.|..+|.+|..+++++.|+++|+++++++|....+|..+|.-+....+++.
T Consensus 394 ST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~ 473 (638)
T KOG1126|consen 394 STTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDK 473 (638)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHh
Confidence 77777777766666666777888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Q 006562 502 AVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYID 581 (640)
Q Consensus 502 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 581 (640)
|..+|+.++..+|.+..+|+.+|.+|.++++++.|.-.|++|+.++|.+......+|.++.++|+.++|+.+|++|+.++
T Consensus 474 a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld 553 (638)
T KOG1126|consen 474 AMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD 553 (638)
T ss_pred HHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCCccccc
Q 006562 582 KRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAV 639 (640)
Q Consensus 582 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Al 639 (640)
|.++...+..|.++...+++++|+..+++..++.|++..+++.+|.+|.++|+.+.|+
T Consensus 554 ~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al 611 (638)
T KOG1126|consen 554 PKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLAL 611 (638)
T ss_pred CCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHH
Confidence 8888888888888888888888888888888888888888888888888888887775
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.95 E-value=7.5e-25 Score=239.80 Aligned_cols=384 Identities=13% Similarity=0.039 Sum_probs=279.8
Q ss_pred HHHHH-HHHhcCCHHHHHHHHHHHHccc-CchhHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcC
Q 006562 40 RIELA-KLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALG 117 (640)
Q Consensus 40 ~~~~~-~~~~~~~y~~Ai~~y~~ai~~~-~~~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g 117 (640)
...++ .+...|++++|+..|++++... .++.++..+|.++...|++++|+..++++++.+|++.. ++.+|.++...|
T Consensus 52 ~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g 130 (765)
T PRK10049 52 YAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAG 130 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCC
Confidence 44455 4468899999999999999998 45667889999999999999999999999999999999 999999999999
Q ss_pred CHHHHHHHHHHHHhhccCChHHHHHHHhHHHHHHHHhhhccchhhhhhcccccccccccCCCCCCCcchhhhhcCCCCCc
Q 006562 118 RKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDI 197 (640)
Q Consensus 118 ~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (640)
++++|+..|++++++.|+.+..+..+..+.........++ ..
T Consensus 131 ~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al-----~~--------------------------------- 172 (765)
T PRK10049 131 RHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPAL-----GA--------------------------------- 172 (765)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHH-----HH---------------------------------
Confidence 9999999999999999988766543322221110000000 00
Q ss_pred cccccCCccccccccCCCCCCCCcccccccccCCCcccccccccccCCccccccccCCCCCCCCccccccccchhhcccc
Q 006562 198 CDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQS 277 (640)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (640)
..+....|+ ....+
T Consensus 173 -------------l~~~~~~p~-----------------~~~~l------------------------------------ 186 (765)
T PRK10049 173 -------------IDDANLTPA-----------------EKRDL------------------------------------ 186 (765)
T ss_pred -------------HHhCCCCHH-----------------HHHHH------------------------------------
Confidence 000000000 00000
Q ss_pred CCcccccCCCCCcccccccCCcccccccccccccccCccCCCCCCCCcccccccccCCCCCCchHHHHHhhHHHhhhhH-
Q 006562 278 SDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLK- 356 (640)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~- 356 (640)
....... ..++........
T Consensus 187 -----------------------------------------------------------~~~~~~~-~~r~~~~~~~~~~ 206 (765)
T PRK10049 187 -----------------------------------------------------------EADAAAE-LVRLSFMPTRSEK 206 (765)
T ss_pred -----------------------------------------------------------HHHHHHH-HHHhhcccccChh
Confidence 0000000 000000000000
Q ss_pred HHHHHHHhhHHHHHhhhh---ccCccc----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHc
Q 006562 357 ETSNEAKRNKKFCVTRIS---KSKSIS----VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY-PEALIGRGTARAFQ 428 (640)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~---~~~~~~----~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~-~~~~~~la~~~~~~ 428 (640)
.... ........++.+. ..+|.. ....+.....++..|++++|+..|+++++..|.. ..+...+|.+|...
T Consensus 207 ~r~~-~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~ 285 (765)
T PRK10049 207 ERYA-IADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKL 285 (765)
T ss_pred HHHH-HHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhc
Confidence 0000 0001111222222 222222 2233332334578899999999999999886442 23445579999999
Q ss_pred cCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHH
Q 006562 429 RELEAAISDFTEAIQSNPSA----GEAWKRRGQARAALGESVEAIQDLSKALEFEPNS---------------ADILHER 489 (640)
Q Consensus 429 g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~l 489 (640)
|++++|+..|+++++..|.+ ......++.++...|++++|+..++++....|.. ..++..+
T Consensus 286 g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~ 365 (765)
T PRK10049 286 HQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLL 365 (765)
T ss_pred CCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHH
Confidence 99999999999999988766 3566778888899999999999999999987631 3467889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHH
Q 006562 490 GIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEK 569 (640)
Q Consensus 490 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~ 569 (640)
+.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++..+|++..+++.+|.++...|++++
T Consensus 366 a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~ 445 (765)
T PRK10049 366 SQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQ 445 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCChHHHH
Q 006562 570 ALECLQQVLYIDKRFSKAYH 589 (640)
Q Consensus 570 A~~~~~~al~~~~~~~~~~~ 589 (640)
|...++++++..|+++.+..
T Consensus 446 A~~~~~~ll~~~Pd~~~~~~ 465 (765)
T PRK10049 446 MDVLTDDVVAREPQDPGVQR 465 (765)
T ss_pred HHHHHHHHHHhCCCCHHHHH
Confidence 99999999999999986544
No 20
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.95 E-value=8.9e-25 Score=197.27 Aligned_cols=322 Identities=16% Similarity=0.207 Sum_probs=253.2
Q ss_pred HHHH-HHHhcCCHHHHHHHHHHHHccc-CchhHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCC
Q 006562 41 IELA-KLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGR 118 (640)
Q Consensus 41 ~~~~-~~~~~~~y~~Ai~~y~~ai~~~-~~~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~ 118 (640)
..++ +++..|+|..|+..|-.||+.+ .+..+++.||-+|+.+|+-..|+.+++++|++.|++..|...+|.+++++|+
T Consensus 42 lElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Ge 121 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGE 121 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhccc
Confidence 4444 7789999999999999999999 5668899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCChHHHHHHHhHHHHHHHHhhhccchhhhhhcccccccccccCCCCCCCcchhhhhcCCCCCcc
Q 006562 119 KEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDIC 198 (640)
Q Consensus 119 ~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (640)
+++|+..|.+.|..+|++....
T Consensus 122 le~A~~DF~~vl~~~~s~~~~~---------------------------------------------------------- 143 (504)
T KOG0624|consen 122 LEQAEADFDQVLQHEPSNGLVL---------------------------------------------------------- 143 (504)
T ss_pred HHHHHHHHHHHHhcCCCcchhH----------------------------------------------------------
Confidence 9999999999976665432110
Q ss_pred ccccCCccccccccCCCCCCCCcccccccccCCCcccccccccccCCccccccccCCCCCCCCccccccccchhhccccC
Q 006562 199 DSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSS 278 (640)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (640)
T Consensus 144 -------------------------------------------------------------------------------- 143 (504)
T KOG0624|consen 144 -------------------------------------------------------------------------------- 143 (504)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccCCCCCcccccccCCcccccccccccccccCccCCCCCCCCcccccccccCCCCCCchHHHHHhhHHHhhhhHHH
Q 006562 279 DDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKET 358 (640)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 358 (640)
++..-+..+..
T Consensus 144 -------------------------------------------------------------eaqskl~~~~e-------- 154 (504)
T KOG0624|consen 144 -------------------------------------------------------------EAQSKLALIQE-------- 154 (504)
T ss_pred -------------------------------------------------------------HHHHHHHhHHH--------
Confidence 00000000000
Q ss_pred HHHHHhhHHHHHhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 006562 359 SNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDF 438 (640)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 438 (640)
...+......++..|++..|+.....+++..|-++..+...+.||...|+...|+..+
T Consensus 155 ----------------------~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dl 212 (504)
T KOG0624|consen 155 ----------------------HWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDL 212 (504)
T ss_pred ----------------------HHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHH
Confidence 1122334455667788888888888888888888888888888888888888888888
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH------------HHHHHHhcCCHHHHHHHH
Q 006562 439 TEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHE------------RGIVNFKFKDFNAAVEDL 506 (640)
Q Consensus 439 ~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~------------la~~~~~~~~~~~A~~~~ 506 (640)
+.+-++..++.+.++.++.+++..|+.+.++...+.+++++|++...+-. -+.-....++|.++++..
T Consensus 213 k~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~g 292 (504)
T KOG0624|consen 213 KQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAG 292 (504)
T ss_pred HHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 88888888888888888888888888888888888888888877443221 133445667888888888
Q ss_pred HHHHHhCCCcHH----HHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Q 006562 507 SACVKLDKENKS----AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK 582 (640)
Q Consensus 507 ~~al~~~~~~~~----~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 582 (640)
++.++.+|..+. ....+..++...+++.+|++.+.+++..+|++..++...+..|+....|+.|+.-|+++.+.++
T Consensus 293 e~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~ 372 (504)
T KOG0624|consen 293 EKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNE 372 (504)
T ss_pred HHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc
Confidence 888888887443 3445677788888888888888888888888888888888888888888888888888888888
Q ss_pred CChHHHHHH
Q 006562 583 RFSKAYHLR 591 (640)
Q Consensus 583 ~~~~~~~~l 591 (640)
++..+...+
T Consensus 373 sn~~~reGl 381 (504)
T KOG0624|consen 373 SNTRAREGL 381 (504)
T ss_pred ccHHHHHHH
Confidence 776654433
No 21
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=2.8e-25 Score=218.65 Aligned_cols=217 Identities=24% Similarity=0.283 Sum_probs=179.9
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 006562 404 FDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA 483 (640)
Q Consensus 404 ~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 483 (640)
.+..+..+|+.|+.|..+|.||..+++++.|+++|+++++++|....+|..+|.-+.....++.|..+|+.++..+|.+.
T Consensus 410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhY 489 (638)
T KOG1126|consen 410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHY 489 (638)
T ss_pred HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhh
Confidence 34566778888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHH
Q 006562 484 DILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD 563 (640)
Q Consensus 484 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 563 (640)
.+|+.+|.+|.++++++.|.-+|++|++++|.+......+|.++.+.|+.++|+.+|++|+.++|.++-..+..|.++..
T Consensus 490 nAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~ 569 (638)
T KOG1126|consen 490 NAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFS 569 (638)
T ss_pred HHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHH
Q 006562 564 LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE 620 (640)
Q Consensus 564 ~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 620 (640)
.+++++|+..+++..+..|+...+++.+|.+|.++|+.+.|+..|.-|..++|.-..
T Consensus 570 ~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 570 LGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred hcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 888888888888888888888888888888888888888888888888888876433
No 22
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.94 E-value=1.1e-24 Score=203.68 Aligned_cols=240 Identities=22% Similarity=0.208 Sum_probs=220.1
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006562 395 GKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSK 474 (640)
Q Consensus 395 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 474 (640)
.++..|..+.+.++..+..++.++.+.|.+.+..|++++|.+.|++++..+.....+++.+|..+..+|+.++|+.+|-+
T Consensus 470 k~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~k 549 (840)
T KOG2003|consen 470 KDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLK 549 (840)
T ss_pred cchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999998888889999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHH
Q 006562 475 ALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAW 554 (640)
Q Consensus 475 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 554 (640)
+-.+--++.++++.++.+|..+.+..+|++++.++..+-|+++.++..+|.+|-+.|+..+|.+++-...+..|.+.+..
T Consensus 550 lh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~i 629 (840)
T KOG2003|consen 550 LHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETI 629 (840)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHH
Confidence 88888888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCC
Q 006562 555 GHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGE 634 (640)
Q Consensus 555 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 634 (640)
.++|..|....-+++|+.+|+++--+.|.........+.|+.+.|+|++|.+.|+..-...|.+.+.+..|..+.-.+|-
T Consensus 630 ewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 630 EWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 99999999999999999999999888998888888999999999999999999999999999999888888877766653
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.94 E-value=1.1e-23 Score=230.11 Aligned_cols=252 Identities=16% Similarity=0.095 Sum_probs=222.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 006562 384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG 463 (640)
Q Consensus 384 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 463 (640)
.+.+|..+...|++++|+..|+++....|. ...++.+|.++...|++++|+.+++++++..|.+...+..++......|
T Consensus 512 ~L~lA~al~~~Gr~eeAi~~~rka~~~~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~G 590 (987)
T PRK09782 512 HRAVAYQAYQVEDYATALAAWQKISLHDMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPG 590 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCC
Confidence 334566777899999999999998776555 4557888999999999999999999999999888877777777777779
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006562 464 ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKA 543 (640)
Q Consensus 464 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 543 (640)
++++|+..++++++.+|+ ..++..+|.++...|++++|+..|++++.++|+++.++..+|.++...|++++|+..|+++
T Consensus 591 r~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~A 669 (987)
T PRK09782 591 QPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERA 669 (987)
T ss_pred CHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999999999996 8889999999999999999999999999999999999999999999999999999999999
Q ss_pred HccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHH
Q 006562 544 IQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLY 623 (640)
Q Consensus 544 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 623 (640)
+..+|+++.++.++|.++...|++++|+..|++++...|+...+....|.+.....+++.|.+.+.++..++|... +..
T Consensus 670 L~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~-a~~ 748 (987)
T PRK09782 670 HKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS-IGL 748 (987)
T ss_pred HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch-hcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999877 777
Q ss_pred HHHHHHHHcCCcccc
Q 006562 624 LRASCYHAIGEYREA 638 (640)
Q Consensus 624 ~la~~~~~~g~~~~A 638 (640)
..|.++...+++-.+
T Consensus 749 ~~g~~~~~~~~~~~~ 763 (987)
T PRK09782 749 RSGAMSTANNNVGGA 763 (987)
T ss_pred ccchHhhhcccccCC
Confidence 888888888776443
No 24
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=8.8e-24 Score=203.64 Aligned_cols=261 Identities=18% Similarity=0.208 Sum_probs=230.8
Q ss_pred HhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH
Q 006562 370 VTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG 449 (640)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 449 (640)
.+.+...+|.+...+...--++...|+..+-..+-.+.++..|+.+..|+..|..|...|++.+|..+|.++..++|..+
T Consensus 267 t~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fg 346 (611)
T KOG1173|consen 267 TEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFG 346 (611)
T ss_pred hHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcccc
Confidence 44556677777766654444888888888888888888888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 006562 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS 529 (640)
Q Consensus 450 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 529 (640)
.+|...|..+...|..++|+..|..|-++.|..-.....+|.-|..++++..|.++|.+++.+.|.++-++..+|.+.+.
T Consensus 347 paWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~ 426 (611)
T KOG1173|consen 347 PAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYT 426 (611)
T ss_pred HHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeeh
Confidence 99999999999999999999999999999998888888899999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHccCc----c---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHH
Q 006562 530 IGEYKKAEEAHLKAIQLDR----N---FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHK 602 (640)
Q Consensus 530 ~g~~~~A~~~~~~a~~~~~----~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~ 602 (640)
.+.|.+|..+|+.++..-+ . ....+.++|.++.+++.+++|+.++++++.+.|.++.++..+|.+|..+|+++
T Consensus 427 ~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld 506 (611)
T KOG1173|consen 427 YEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLD 506 (611)
T ss_pred HhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChH
Confidence 9999999999999984322 1 24567899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHH
Q 006562 603 KAIKDLSSGLGIDPSNIECLYLRASCYH 630 (640)
Q Consensus 603 ~A~~~~~~al~~~p~~~~~~~~la~~~~ 630 (640)
.|+++|.+++.+.|++..+-..|+.+..
T Consensus 507 ~Aid~fhKaL~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 507 KAIDHFHKALALKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 9999999999999999766666665543
No 25
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.94 E-value=4.8e-23 Score=210.91 Aligned_cols=231 Identities=19% Similarity=0.107 Sum_probs=204.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH-----HHHHHHH
Q 006562 382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG-----EAWKRRG 456 (640)
Q Consensus 382 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la 456 (640)
..+..+|..+...|++++|+..|+++++.+|.+..++..++.++...|++++|+..++++++..|.+. ..+..+|
T Consensus 108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la 187 (389)
T PRK11788 108 LALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELA 187 (389)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 34667899999999999999999999999999999999999999999999999999999999887653 3566789
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcCCHHH
Q 006562 457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN-KSAYTYLGLALSSIGEYKK 535 (640)
Q Consensus 457 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~g~~~~ 535 (640)
.++...|++++|+..|+++++..|....++..+|.++...|++++|+..+++++..+|.+ ..++..++.++...|++++
T Consensus 188 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~ 267 (389)
T PRK11788 188 QQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAE 267 (389)
T ss_pred HHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999999999999999999999999999999999999999998876 4667889999999999999
Q ss_pred HHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh--cCCHHHHHHHHHHhhc
Q 006562 536 AEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG--LGQHKKAIKDLSSGLG 613 (640)
Q Consensus 536 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~ 613 (640)
|+..+++++...|+... +..++.++...|++++|+..++++++..|++......++..... .|+..+|+..+++.++
T Consensus 268 A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 268 GLEFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 99999999999998754 48899999999999999999999999999887665555544422 5688888888877663
No 26
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.6e-22 Score=190.04 Aligned_cols=263 Identities=18% Similarity=0.189 Sum_probs=243.6
Q ss_pred cCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 006562 376 SKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR 455 (640)
Q Consensus 376 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 455 (640)
..|.+.-.-...|.+.+.+.|+++|+..|+.+.+.+|-...-.-....+++-..+-.+-.-..+.+..++.-.++....+
T Consensus 257 gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiI 336 (559)
T KOG1155|consen 257 GFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCII 336 (559)
T ss_pred cCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeee
Confidence 36777777788899999999999999999999999998877777778888877776666667777888888888889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Q 006562 456 GQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKK 535 (640)
Q Consensus 456 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~ 535 (640)
|+.|...++.++|+.+|+++++++|....+|..+|.-|..+.+...|+..|++|++++|.+..+|+.+|++|..++...=
T Consensus 337 aNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~Y 416 (559)
T KOG1155|consen 337 ANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFY 416 (559)
T ss_pred hhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhc--
Q 006562 536 AEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLG-- 613 (640)
Q Consensus 536 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-- 613 (640)
|+-+|+++...-|+++..|..+|.+|.+.++.++|+.+|.+++........++..+|.+|.++++..+|..+|++.++
T Consensus 417 aLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~ 496 (559)
T KOG1155|consen 417 ALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVS 496 (559)
T ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999888889999999999999999999999999987
Q ss_pred -----cCCCCHHHHHHHHHHHHHcCCcccc
Q 006562 614 -----IDPSNIECLYLRASCYHAIGEYREA 638 (640)
Q Consensus 614 -----~~p~~~~~~~~la~~~~~~g~~~~A 638 (640)
..|....+...|+.-+.+.+++++|
T Consensus 497 ~~eg~~~~~t~ka~~fLA~~f~k~~~~~~A 526 (559)
T KOG1155|consen 497 ELEGEIDDETIKARLFLAEYFKKMKDFDEA 526 (559)
T ss_pred HhhcccchHHHHHHHHHHHHHHhhcchHHH
Confidence 4565667888899999999999987
No 27
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.92 E-value=5.9e-22 Score=179.17 Aligned_cols=244 Identities=20% Similarity=0.252 Sum_probs=213.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Q 006562 384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYP---------------EALIGRGTARAFQRELEAAISDFTEAIQSNPSA 448 (640)
Q Consensus 384 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~---------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 448 (640)
...+|.+++.+|++++|...|+.+++.+|++. +.+......++..|++..|+.+....+++.|.+
T Consensus 109 RiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wd 188 (504)
T KOG0624|consen 109 RIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWD 188 (504)
T ss_pred HHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcch
Confidence 34568889999999999999999999998642 223334455667799999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHH------
Q 006562 449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTY------ 522 (640)
Q Consensus 449 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~------ 522 (640)
+..+...+.||...|+...|+..++.+-++..++.+.++.++.+++..|+.+.++...+++++++|+....+-.
T Consensus 189 a~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkK 268 (504)
T KOG0624|consen 189 ASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKK 268 (504)
T ss_pred hHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999987543221
Q ss_pred ------HHHHHHHcCCHHHHHHHHHHHHccCcccHH----HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 006562 523 ------LGLALSSIGEYKKAEEAHLKAIQLDRNFLE----AWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRG 592 (640)
Q Consensus 523 ------la~~~~~~g~~~~A~~~~~~a~~~~~~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la 592 (640)
-+......++|.+++...++.++.+|..+. ....+..|+..-|++.+|+..+.+++..+|++..++...|
T Consensus 269 v~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRA 348 (504)
T KOG0624|consen 269 VVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRA 348 (504)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 234456678999999999999999998543 4456778888899999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHH
Q 006562 593 LLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS 627 (640)
Q Consensus 593 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 627 (640)
.+|.-...|+.|+..|+++.+.++++..+...+-.
T Consensus 349 eA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~ 383 (504)
T KOG0624|consen 349 EAYLGDEMYDDAIHDYEKALELNESNTRAREGLER 383 (504)
T ss_pred HHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence 99999999999999999999999999877655543
No 28
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=2.5e-22 Score=205.60 Aligned_cols=273 Identities=20% Similarity=0.125 Sum_probs=217.7
Q ss_pred HHHHHhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHH
Q 006562 366 KKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY----PEALIGRGTARAFQRELEAAISDFTEA 441 (640)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~a 441 (640)
....+.++...+|.++..++.+|..+...|++++|+..+++++...+.. ..++..+|.++...|++++|+..|.++
T Consensus 54 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~ 133 (389)
T PRK11788 54 AIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQL 133 (389)
T ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4444666777788888888888888888899999998888888753322 356788888888889999999999988
Q ss_pred HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 006562 442 IQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA-----DILHERGIVNFKFKDFNAAVEDLSACVKLDKEN 516 (640)
Q Consensus 442 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 516 (640)
++..|.+..++..++.++...|++++|+..+++++...|.+. ..+..+|.++...|++++|+..++++++..|++
T Consensus 134 l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 213 (389)
T PRK11788 134 VDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQC 213 (389)
T ss_pred HcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCC
Confidence 888888888888888888888999999999888888877653 245677888888889999999999988888888
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 006562 517 KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF-LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLL 595 (640)
Q Consensus 517 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 595 (640)
..++..+|.++...|++++|+..+++++..+|.+ ..++..++.+|...|++++|+..+++++...|+... +..++.++
T Consensus 214 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~-~~~la~~~ 292 (389)
T PRK11788 214 VRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADL-LLALAQLL 292 (389)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH-HHHHHHHH
Confidence 8888888888888999999999999888887765 456778888888889999999999888888887644 47888888
Q ss_pred HhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH--cCCccccc
Q 006562 596 HGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHA--IGEYREAV 639 (640)
Q Consensus 596 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--~g~~~~Al 639 (640)
...|++++|+..++++++..|++......++..+.. .|+..+|+
T Consensus 293 ~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~ 338 (389)
T PRK11788 293 EEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESL 338 (389)
T ss_pred HHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHH
Confidence 888999999999988888888876555444433322 34555553
No 29
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.92 E-value=4.9e-22 Score=186.00 Aligned_cols=263 Identities=16% Similarity=0.190 Sum_probs=239.0
Q ss_pred CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHc--cCHHHHHHHHHHHHHhCCCcHHHHH
Q 006562 377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY-PEALIGRGTARAFQ--RELEAAISDFTEAIQSNPSAGEAWK 453 (640)
Q Consensus 377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~-~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~ 453 (640)
.+...+.-+.++..++++|+++.|++++.-.-+.+... ..+-.++..+++.+ .++..|..+...++..+.-++.++.
T Consensus 415 ~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~ 494 (840)
T KOG2003|consen 415 AELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALT 494 (840)
T ss_pred hhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhh
Confidence 34455677888999999999999999987655554432 33445566666654 4789999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q 006562 454 RRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEY 533 (640)
Q Consensus 454 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~ 533 (640)
..|.+-+..|++++|.+.|+.++..+....++++++|..+..+|+.++|+.+|-+.-.+-.++..+++.++.+|..+.+.
T Consensus 495 nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~ 574 (840)
T KOG2003|consen 495 NKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDP 574 (840)
T ss_pred cCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCH
Confidence 99999999999999999999999998888999999999999999999999999999888889999999999999999999
Q ss_pred HHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 006562 534 KKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLG 613 (640)
Q Consensus 534 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 613 (640)
.+|++++.++..+-|++|.++..+|.+|-+.|+-.+|.+++-...+..|.+.+....+|..|....-+++|+.+|+++--
T Consensus 575 aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal 654 (840)
T KOG2003|consen 575 AQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL 654 (840)
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCccccc
Q 006562 614 IDPSNIECLYLRASCYHAIGEYREAV 639 (640)
Q Consensus 614 ~~p~~~~~~~~la~~~~~~g~~~~Al 639 (640)
+.|+........+.|+.+.|+|..|+
T Consensus 655 iqp~~~kwqlmiasc~rrsgnyqka~ 680 (840)
T KOG2003|consen 655 IQPNQSKWQLMIASCFRRSGNYQKAF 680 (840)
T ss_pred cCccHHHHHHHHHHHHHhcccHHHHH
Confidence 99998888899999999999999885
No 30
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.91 E-value=7.9e-20 Score=196.12 Aligned_cols=424 Identities=9% Similarity=-0.020 Sum_probs=246.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHcccCchh-HHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHc
Q 006562 38 TARIELAKLCSLRNWSKAIRILDSLLAQSYEIQ-DICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSAL 116 (640)
Q Consensus 38 ~~~~~~~~~~~~~~y~~Ai~~y~~ai~~~~~~~-~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~ 116 (640)
..+...-..+++|+|..|+..|.++++.+|+.. .....+..+...|++++|+..|++++..+|....+...+|.+|..+
T Consensus 36 ~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~ 115 (822)
T PRK14574 36 TQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNE 115 (822)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHc
Confidence 444555567999999999999999999997763 3338888899999999999999999943444444444448899999
Q ss_pred CCHHHHHHHHHHHHhhccCChHHHHHHHhHHHHHHHHhhhccchhhhhhcccccccccccCCCCCCCcchhhhhcCCCCC
Q 006562 117 GRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSD 196 (640)
Q Consensus 117 g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (640)
|++++|+..|+++++..|+.+..+..+..+.-........+ ..
T Consensus 116 gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl-----~~-------------------------------- 158 (822)
T PRK14574 116 KRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVL-----KQ-------------------------------- 158 (822)
T ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHH-----HH--------------------------------
Confidence 99999999999999999998766543222111111110111 00
Q ss_pred ccccccCCccccccccCCCCCCCCcccccccccCCCcccccccccccCCccccccccCCCCCCCCccccccccchhhccc
Q 006562 197 ICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQ 276 (640)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (640)
..
T Consensus 159 ----------------------------------------l~-------------------------------------- 160 (822)
T PRK14574 159 ----------------------------------------AT-------------------------------------- 160 (822)
T ss_pred ----------------------------------------HH--------------------------------------
Confidence 00
Q ss_pred cCCcccccCCCCCcccccccCCcccccccccccccccCccCCCCCCCCcccccccccCCCCCCchHHHHHhhHHHhhhhH
Q 006562 277 SSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLK 356 (640)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 356 (640)
..+. ..+. ....+..+....+
T Consensus 161 ------------------------------------------------------~l~~-~dp~-~~~~l~layL~~~--- 181 (822)
T PRK14574 161 ------------------------------------------------------ELAE-RDPT-VQNYMTLSYLNRA--- 181 (822)
T ss_pred ------------------------------------------------------Hhcc-cCcc-hHHHHHHHHHHHh---
Confidence 0000 0000 0000000000000
Q ss_pred HHHHHHHhhHHHHHhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHH--HHHHHHHc------
Q 006562 357 ETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIG--RGTARAFQ------ 428 (640)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~--la~~~~~~------ 428 (640)
.... ......++++....|.+.+.+..+...+...|-...|.+...+--.........++. .+.-..+.
T Consensus 182 --~~~~-~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~ 258 (822)
T PRK14574 182 --TDRN-YDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTR 258 (822)
T ss_pred --cchH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccc
Confidence 0000 113335677788888888888888888888887777776555422111110111110 01001100
Q ss_pred ---c---CHHHHHHHHHHHHHhCCCcH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Q 006562 429 ---R---ELEAAISDFTEAIQSNPSAG-------EAWKRRGQARAALGESVEAIQDLSKALEFE-PNSADILHERGIVNF 494 (640)
Q Consensus 429 ---g---~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~ 494 (640)
+ -.+.|+..++..+...+..+ .+..-.-.++...+++.+++..|+.+.... |-...+....|..|+
T Consensus 259 ~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl 338 (822)
T PRK14574 259 SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYI 338 (822)
T ss_pred cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Confidence 1 12334555555554222211 122233344555666666666666655443 223345556666666
Q ss_pred hcCCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCc---------------ccHHH
Q 006562 495 KFKDFNAAVEDLSACVKLDK------ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR---------------NFLEA 553 (640)
Q Consensus 495 ~~~~~~~A~~~~~~al~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~---------------~~~~~ 553 (640)
..++.++|+..|++++...| .+......|-.++...+++++|..++++.....| +....
T Consensus 339 ~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~ 418 (822)
T PRK14574 339 DRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEG 418 (822)
T ss_pred hcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHH
Confidence 66666777666666665432 1222234556666666666666666666655322 22445
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHcC
Q 006562 554 WGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIG 633 (640)
Q Consensus 554 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 633 (640)
...++.++...|++.+|.+.+++.+...|.++..+..+|.++...|.+.+|...++.+..++|++..+...++.++..+|
T Consensus 419 ~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~ 498 (822)
T PRK14574 419 QTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQ 498 (822)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhh
Confidence 55666666666667777776666666666666666666666666677777766666666666666666666666666666
Q ss_pred Ccccc
Q 006562 634 EYREA 638 (640)
Q Consensus 634 ~~~~A 638 (640)
++.+|
T Consensus 499 e~~~A 503 (822)
T PRK14574 499 EWHQM 503 (822)
T ss_pred hHHHH
Confidence 66655
No 31
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=2.1e-20 Score=175.99 Aligned_cols=262 Identities=16% Similarity=0.137 Sum_probs=223.8
Q ss_pred HHhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Q 006562 369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA 448 (640)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 448 (640)
.++.+.+++|-..+-.-....+++-..+-.+---+.+.+..++.-.++....+|..|...++.++|+.+|+++++++|..
T Consensus 284 ~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~ 363 (559)
T KOG1155|consen 284 VFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKY 363 (559)
T ss_pred HHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcch
Confidence 34555666777766666666677766665555555667777888888889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 006562 449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALS 528 (640)
Q Consensus 449 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 528 (640)
..+|..+|.-|..+.+...|+..|++|++++|.+-.+|+.+|+.|..++...=|+-+|+++...-|+++..|..+|.+|.
T Consensus 364 ~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~ 443 (559)
T KOG1155|consen 364 LSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYE 443 (559)
T ss_pred hHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------CCCChHHHHHHHHHHHhcCCH
Q 006562 529 SIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI-------DKRFSKAYHLRGLLLHGLGQH 601 (640)
Q Consensus 529 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------~~~~~~~~~~la~~~~~~g~~ 601 (640)
++++.++|+++|.+++........++..+|.+|.++++..+|..+|++.++. .|....+...++..+.+.+++
T Consensus 444 kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~ 523 (559)
T KOG1155|consen 444 KLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDF 523 (559)
T ss_pred HhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcch
Confidence 9999999999999999988888899999999999999999999999999873 344556777799999999999
Q ss_pred HHHHHHHHHhhccCCCCHHHHHHHHHHHH
Q 006562 602 KKAIKDLSSGLGIDPSNIECLYLRASCYH 630 (640)
Q Consensus 602 ~~A~~~~~~al~~~p~~~~~~~~la~~~~ 630 (640)
++|-.+...++..++...++...+-.+..
T Consensus 524 ~~As~Ya~~~~~~~~e~eeak~LlReir~ 552 (559)
T KOG1155|consen 524 DEASYYATLVLKGETECEEAKALLREIRK 552 (559)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 99999999998887666565555444443
No 32
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.5e-20 Score=181.44 Aligned_cols=259 Identities=17% Similarity=0.155 Sum_probs=179.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 006562 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (640)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 460 (640)
++.....+..++..++|.+..++++..++.+|-++.++-..--++...|+..+-...-.+.++..|+.+-.|+..|..|.
T Consensus 244 ~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl 323 (611)
T KOG1173|consen 244 LDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYL 323 (611)
T ss_pred HHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHH
Confidence 55566666677777777777777777777777666555444446667777666666666677777777777777777777
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 006562 461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAH 540 (640)
Q Consensus 461 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 540 (640)
..|++.+|..+|.++..++|....+|...|..+...|..++|+..|..|-++.|........+|.-|..+++++-|.++|
T Consensus 324 ~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff 403 (611)
T KOG1173|consen 324 MIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFF 403 (611)
T ss_pred HhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777766666666777777777777777777
Q ss_pred HHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC----C---ChHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 006562 541 LKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK----R---FSKAYHLRGLLLHGLGQHKKAIKDLSSGLG 613 (640)
Q Consensus 541 ~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~----~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 613 (640)
.+|+.+.|.+|-++..+|.+.+..+.|.+|..+|+.++..-+ . ....+.++|.++.+++.+++|+.+|++++.
T Consensus 404 ~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~ 483 (611)
T KOG1173|consen 404 KQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL 483 (611)
T ss_pred HHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH
Confidence 777777777777777777777777777777777777663221 1 223466677777777777777777777777
Q ss_pred cCCCCHHHHHHHHHHHHHcCCccccc
Q 006562 614 IDPSNIECLYLRASCYHAIGEYREAV 639 (640)
Q Consensus 614 ~~p~~~~~~~~la~~~~~~g~~~~Al 639 (640)
+.|.++.++-.+|.+|..+|+++.|+
T Consensus 484 l~~k~~~~~asig~iy~llgnld~Ai 509 (611)
T KOG1173|consen 484 LSPKDASTHASIGYIYHLLGNLDKAI 509 (611)
T ss_pred cCCCchhHHHHHHHHHHHhcChHHHH
Confidence 77777777777777777777776664
No 33
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.90 E-value=3e-20 Score=188.94 Aligned_cols=66 Identities=17% Similarity=0.098 Sum_probs=55.6
Q ss_pred HHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCh
Q 006562 72 ICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQS 137 (640)
Q Consensus 72 ~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~~~~A~~~~~~al~~~~~~~ 137 (640)
+...|+..+-.|++++|+..|..+|+++|.++.+|+.+|.+|.++|+.+.|..++-.|-.+.|...
T Consensus 142 ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~ 207 (895)
T KOG2076|consen 142 LLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDY 207 (895)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCh
Confidence 566777777779999999999999999999999999999999999999999988888844444443
No 34
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.90 E-value=2.7e-23 Score=201.27 Aligned_cols=255 Identities=20% Similarity=0.223 Sum_probs=125.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 006562 383 FRLSRGIAQVNEGKYASAISIFDQILKE--DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (640)
Q Consensus 383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 460 (640)
..+.+|..++..|++++|++.+.+.+.. .|+++..|..+|.+....++++.|+..|++++..++.++..+..++.+ .
T Consensus 10 ~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~ 88 (280)
T PF13429_consen 10 EALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-L 88 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-c
Confidence 3346699999999999999999766544 488899999999999999999999999999999999988888888888 7
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHH
Q 006562 461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD--KENKSAYTYLGLALSSIGEYKKAEE 538 (640)
Q Consensus 461 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~g~~~~A~~ 538 (640)
..+++++|+.++.++.+..+ ++..+.....++...++++++...+.++.... +.++..+..+|.++...|++++|+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 89 QDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred cccccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999988764 56777788888999999999999999987655 6788999999999999999999999
Q ss_pred HHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCC
Q 006562 539 AHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN 618 (640)
Q Consensus 539 ~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 618 (640)
.+++++..+|+++.+...++.++...|+++++...+.......|.++..+..+|.++..+|++++|+.+|++++..+|++
T Consensus 168 ~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d 247 (280)
T PF13429_consen 168 DYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD 247 (280)
T ss_dssp HHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccc
Confidence 99999999999999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCccccc
Q 006562 619 IECLYLRASCYHAIGEYREAV 639 (640)
Q Consensus 619 ~~~~~~la~~~~~~g~~~~Al 639 (640)
+..+..+|.++...|++++|+
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~ 268 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEAL 268 (280)
T ss_dssp HHHHHHHHHHHT---------
T ss_pred ccccccccccccccccccccc
Confidence 999999999999999999986
No 35
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.89 E-value=2.8e-20 Score=167.34 Aligned_cols=246 Identities=14% Similarity=0.121 Sum_probs=232.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 006562 382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAA 461 (640)
Q Consensus 382 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 461 (640)
.....+|.+|+..|-+.+|.+.++..++..|. ++.+..++.+|....+...|+..+.+.++..|.+...+..+++++..
T Consensus 224 wWk~Q~gkCylrLgm~r~AekqlqssL~q~~~-~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 224 WWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPH-PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHHHhcChhhhHHHHHHHhhcCCc-hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHH
Confidence 34467899999999999999999999998775 89999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006562 462 LGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHL 541 (640)
Q Consensus 462 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 541 (640)
++++++|.++|+.+++.+|.+.++...+|.-|+..++.+-|+.+|++.+.+.-.+++.+.++|.+.+..++++-++..|+
T Consensus 303 m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccCcc---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCC
Q 006562 542 KAIQLDRN---FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN 618 (640)
Q Consensus 542 ~a~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 618 (640)
+++....+ -.++|+++|.+....|++..|...|+-++..++++.+++.++|.+-.+.|+.++|..++..+-...|+-
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m 462 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDM 462 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccc
Confidence 99987542 378999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHH
Q 006562 619 IECLYLRASC 628 (640)
Q Consensus 619 ~~~~~~la~~ 628 (640)
.+..++++.+
T Consensus 463 ~E~~~Nl~~~ 472 (478)
T KOG1129|consen 463 AEVTTNLQFM 472 (478)
T ss_pred cccccceeEE
Confidence 8777776654
No 36
>PRK12370 invasion protein regulator; Provisional
Probab=99.89 E-value=2.7e-20 Score=196.62 Aligned_cols=256 Identities=14% Similarity=0.014 Sum_probs=218.8
Q ss_pred HHHHHHHHHHHHHc---CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc---------CHHHHHHHHHHHHHhCCCc
Q 006562 381 VDFRLSRGIAQVNE---GKYASAISIFDQILKEDPMYPEALIGRGTARAFQR---------ELEAAISDFTEAIQSNPSA 448 (640)
Q Consensus 381 ~~~~~~~a~~~~~~---g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g---------~~~~A~~~~~~al~~~p~~ 448 (640)
...++..|...+.. +++++|+..|+++++.+|+++.++..+|.++...+ ++++|+..++++++.+|++
T Consensus 258 a~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~ 337 (553)
T PRK12370 258 STMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNN 337 (553)
T ss_pred HHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCC
Confidence 33456667655443 45789999999999999999999999999887543 4899999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 006562 449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALS 528 (640)
Q Consensus 449 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 528 (640)
+.++..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++++|.++..+..++.++.
T Consensus 338 ~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~ 417 (553)
T PRK12370 338 PQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITY 417 (553)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888777787888
Q ss_pred HcCCHHHHHHHHHHHHccC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 006562 529 SIGEYKKAEEAHLKAIQLD-RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKD 607 (640)
Q Consensus 529 ~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 607 (640)
..|++++|+..+++++... |+++..+..+|.++...|++++|...+.+.....|....++..++..|...|+ +|...
T Consensus 418 ~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~ 495 (553)
T PRK12370 418 YHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPT 495 (553)
T ss_pred hccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHH
Confidence 8999999999999999875 78899999999999999999999999999988888888899999999998884 77777
Q ss_pred HHHhhccCCCCHHHHHHHHHHHHHcCCcccc
Q 006562 608 LSSGLGIDPSNIECLYLRASCYHAIGEYREA 638 (640)
Q Consensus 608 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 638 (640)
+++.++.....+.-....+.+|.-.|+.+.|
T Consensus 496 l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~ 526 (553)
T PRK12370 496 IREFLESEQRIDNNPGLLPLVLVAHGEAIAE 526 (553)
T ss_pred HHHHHHHhhHhhcCchHHHHHHHHHhhhHHH
Confidence 7776654322222222255666656555443
No 37
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.88 E-value=7.2e-19 Score=179.01 Aligned_cols=349 Identities=18% Similarity=0.161 Sum_probs=274.5
Q ss_pred HHHhcCCHHHHHHHHHHHHccc-CchhHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHH
Q 006562 45 KLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEAL 123 (640)
Q Consensus 45 ~~~~~~~y~~Ai~~y~~ai~~~-~~~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~~~~A~ 123 (640)
-+|..||+++|+..+.++|.++ .++.+|+.+|.+|.++|+.++|+...-.|--++|++.+-|.+++....++|++.+|.
T Consensus 148 ~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 148 NLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHH
Confidence 5588999999999999999999 566779999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCChHHHHHHHhHHHHHHHHhhhccchhhhhhcccccccccccCCCCCCCcchhhhhcCCCCCccccccC
Q 006562 124 SVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQ 203 (640)
Q Consensus 124 ~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (640)
-+|.+|++..|.
T Consensus 228 ~cy~rAI~~~p~-------------------------------------------------------------------- 239 (895)
T KOG2076|consen 228 YCYSRAIQANPS-------------------------------------------------------------------- 239 (895)
T ss_pred HHHHHHHhcCCc--------------------------------------------------------------------
Confidence 999999543332
Q ss_pred CccccccccCCCCCCCCcccccccccCCCcccccccccccCCccccccccCCCCCCCCccccccccchhhccccCCcccc
Q 006562 204 SRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDI 283 (640)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (640)
T Consensus 240 -------------------------------------------------------------------------------- 239 (895)
T KOG2076|consen 240 -------------------------------------------------------------------------------- 239 (895)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCcccccccCCcccccccccccccccCccCCCCCCCCcccccccccCCCCCCchHHHHHhhHHHhhhhHHHHHHHH
Q 006562 284 CNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAK 363 (640)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 363 (640)
T Consensus 240 -------------------------------------------------------------------------------- 239 (895)
T KOG2076|consen 240 -------------------------------------------------------------------------------- 239 (895)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHccCHHHHHHHH
Q 006562 364 RNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY-----PEALIGRGTARAFQRELEAAISDF 438 (640)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~-----~~~~~~la~~~~~~g~~~~A~~~~ 438 (640)
+....+.++..+.+.|+...|...|.+++...|.. .......+..+...++-+.|++.+
T Consensus 240 ----------------n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 240 ----------------NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred ----------------chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 13344556778888899999999999999988832 122334466777777778899999
Q ss_pred HHHHHhCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC--------------------------CHHH-HH
Q 006562 439 TEAIQSNP--SAGEAWKRRGQARAALGESVEAIQDLSKALEF--EPN--------------------------SADI-LH 487 (640)
Q Consensus 439 ~~al~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~--------------------------~~~~-~~ 487 (640)
+.++.... ...+.+..++.++....+++.|.......... .++ +..+ ..
T Consensus 304 e~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl 383 (895)
T KOG2076|consen 304 EGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRL 383 (895)
T ss_pred HHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhH
Confidence 88887322 23345667888888888898888877665541 000 1122 45
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcc-cHHHHHHHHHHHHHhc
Q 006562 488 ERGIVNFKFKDFNAAVEDLSACVKLDK-ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN-FLEAWGHLTQFYQDLA 565 (640)
Q Consensus 488 ~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g 565 (640)
.++.+..+.++..+++..+..--...| +++..++.++.++...|++.+|+.+|..+....+. +..+|+.+|.+|..+|
T Consensus 384 ~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~ 463 (895)
T KOG2076|consen 384 MICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELG 463 (895)
T ss_pred hhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHh
Confidence 555555666666666665544333223 35788999999999999999999999998877554 3678999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCC---------HHHHHHHHHHHHHcCCcc
Q 006562 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN---------IECLYLRASCYHAIGEYR 636 (640)
Q Consensus 566 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~la~~~~~~g~~~ 636 (640)
.++.|+..|++++...|++..+...++.++.++|++++|.+.+.....-++.+ ......+..++...|+.+
T Consensus 464 e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E 543 (895)
T KOG2076|consen 464 EYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKRE 543 (895)
T ss_pred hHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHH
Confidence 99999999999999999999999999999999999999999998876433222 245677788888888766
Q ss_pred c
Q 006562 637 E 637 (640)
Q Consensus 637 ~ 637 (640)
+
T Consensus 544 ~ 544 (895)
T KOG2076|consen 544 E 544 (895)
T ss_pred H
Confidence 4
No 38
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.87 E-value=9.3e-19 Score=175.23 Aligned_cols=273 Identities=14% Similarity=0.108 Sum_probs=170.5
Q ss_pred HHHHHhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 006562 366 KKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKE-DPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444 (640)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 444 (640)
.-..++++...+|.++...+.++..|...++.+.|..+.+++++. ..+++.+|..+|.++...+++.+|+...+.++..
T Consensus 463 slqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E 542 (799)
T KOG4162|consen 463 SLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE 542 (799)
T ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 334677888899999999999999999999999999999999999 5567999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH---------HHHHHHHHhcCCHHHHHHHHHHHHHh---
Q 006562 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADIL---------HERGIVNFKFKDFNAAVEDLSACVKL--- 512 (640)
Q Consensus 445 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~---------~~la~~~~~~~~~~~A~~~~~~al~~--- 512 (640)
.|+|.........+-...++.++|+..+...+.+......+. ...+......++..+|++..+++...
T Consensus 543 ~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~ 622 (799)
T KOG4162|consen 543 FGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVAS 622 (799)
T ss_pred hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHh
Confidence 998766666666666667777777776666555432111111 11111111222333333333322211
Q ss_pred -----C-----C--------Cc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHH
Q 006562 513 -----D-----K--------EN-----KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEK 569 (640)
Q Consensus 513 -----~-----~--------~~-----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~ 569 (640)
. | .. ...|...+..+...++.++|..++.++-.++|..+..|+..|.++...|.+.+
T Consensus 623 ~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~E 702 (799)
T KOG4162|consen 623 QLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEE 702 (799)
T ss_pred hhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHH
Confidence 0 0 00 12344445555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHH--HHHHhhccCCCCHHHHHHHHHHHHHcCCcccc
Q 006562 570 ALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIK--DLSSGLGIDPSNIECLYLRASCYHAIGEYREA 638 (640)
Q Consensus 570 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 638 (640)
|.+.|..++.++|+++.....+|.++.+.|+..-|.. .+..+++++|.++++|+.+|.++.++|+.++|
T Consensus 703 A~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~A 773 (799)
T KOG4162|consen 703 AKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQA 773 (799)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHH
Confidence 5555555555555555555555555555555544444 55555555555555555555555555555544
No 39
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.87 E-value=2e-18 Score=169.02 Aligned_cols=266 Identities=15% Similarity=0.081 Sum_probs=248.2
Q ss_pred HHHhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 006562 368 FCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS 447 (640)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 447 (640)
-.+.++....|.....|+..+..+...|+...|..++.++++.+|++.++|+....+.....+++.|..+|.++....|
T Consensus 571 Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sg- 649 (913)
T KOG0495|consen 571 ALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISG- 649 (913)
T ss_pred HHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCC-
Confidence 3467778888999999999999999999999999999999999999999999999999999999999999999988766
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 006562 448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLAL 527 (640)
Q Consensus 448 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 527 (640)
...+|+.-+.+...+++.++|+..++++++..|.....|..+|.++.++++.+.|...|...++..|..+..|..++.+-
T Consensus 650 TeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakle 729 (913)
T KOG0495|consen 650 TERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLE 729 (913)
T ss_pred cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHH
Confidence 56788888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------------------------
Q 006562 528 SSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKR------------------------ 583 (640)
Q Consensus 528 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~------------------------ 583 (640)
...|..-.|...++++.-.+|.+...|....+.-.+.|+.+.|...+.++++..|+
T Consensus 730 Ek~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DA 809 (913)
T KOG0495|consen 730 EKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDA 809 (913)
T ss_pred HHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHH
Confidence 99999999999999999999999999999999999999999999999999888774
Q ss_pred ------ChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCC
Q 006562 584 ------FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGE 634 (640)
Q Consensus 584 ------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 634 (640)
++.++...|.++....++++|.++|.++++.+|++.++|..+-..+...|.
T Consensus 810 Lkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~ 866 (913)
T KOG0495|consen 810 LKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGT 866 (913)
T ss_pred HHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCC
Confidence 344577789999999999999999999999999999999888888888884
No 40
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.87 E-value=2.2e-18 Score=185.14 Aligned_cols=226 Identities=12% Similarity=-0.007 Sum_probs=170.2
Q ss_pred hHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHH
Q 006562 397 YASAISIFDQILKEDPMYP-------EALIGRGTARAFQRELEAAISDFTEAIQSN-PSAGEAWKRRGQARAALGESVEA 468 (640)
Q Consensus 397 ~~~A~~~~~~~l~~~~~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A 468 (640)
.+.|+..++..+...+..| .+..-.-.++...|++.+++..|+.+.... |-...+....|..|...+++++|
T Consensus 267 ~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA 346 (822)
T PRK14574 267 ADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKA 346 (822)
T ss_pred HHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHH
Confidence 3556666677666333222 233444556667788888888888876544 22445677788888888888888
Q ss_pred HHHHHHHHHhCC------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC---------------CcHHHHHHHHHHH
Q 006562 469 IQDLSKALEFEP------NSADILHERGIVNFKFKDFNAAVEDLSACVKLDK---------------ENKSAYTYLGLAL 527 (640)
Q Consensus 469 ~~~~~~al~~~p------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~---------------~~~~~~~~la~~~ 527 (640)
+.+|..++.-.| ........+...+...+++++|..++++.....| +-......++.++
T Consensus 347 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~ 426 (822)
T PRK14574 347 APILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSL 426 (822)
T ss_pred HHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHH
Confidence 888888877552 1233345677778888888888888888877444 2245666778888
Q ss_pred HHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 006562 528 SSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKD 607 (640)
Q Consensus 528 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 607 (640)
...|++.+|.+.+++.+...|.++..+..+|.++...|.+..|...++.+..++|++..+...+|.++..+|++.+|...
T Consensus 427 ~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~ 506 (822)
T PRK14574 427 VALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELL 506 (822)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHhhccCCCCHHHH
Q 006562 608 LSSGLGIDPSNIECL 622 (640)
Q Consensus 608 ~~~al~~~p~~~~~~ 622 (640)
...+++..|+++...
T Consensus 507 ~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 507 TDDVISRSPEDIPSQ 521 (822)
T ss_pred HHHHHhhCCCchhHH
Confidence 888888888877443
No 41
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=4.5e-20 Score=171.48 Aligned_cols=288 Identities=22% Similarity=0.251 Sum_probs=231.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHcccCc-hhHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 006562 36 AITARIELAKLCSLRNWSKAIRILDSLLAQSYE-IQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFS 114 (640)
Q Consensus 36 ~~~~~~~~~~~~~~~~y~~Ai~~y~~ai~~~~~-~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~ 114 (640)
+.+.......++++.+|..|+..|+.||...|+ ...|.+||.++..+|+|+.|..++++.+.++|.+.+++.+.|+++.
T Consensus 49 Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~ 128 (486)
T KOG0550|consen 49 AEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHL 128 (486)
T ss_pred HHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhh
Confidence 344556666889999999999999999999954 4558899999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhccCChHHHHHHHhHHHHHHHHhhhccchhhhhhcccccccccccCCCCCCCcchhhhhcCCC
Q 006562 115 ALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNK 194 (640)
Q Consensus 115 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (640)
.++...+|...|+.. + .. ...+.+ ..
T Consensus 129 a~~~~i~A~~~~~~~------~---------~~----~~anal-----~~------------------------------ 154 (486)
T KOG0550|consen 129 ALSDLIEAEEKLKSK------Q---------AY----KAANAL-----PT------------------------------ 154 (486)
T ss_pred hhHHHHHHHHHhhhh------h---------hh----HHhhhh-----hh------------------------------
Confidence 999999999777633 0 00 000000 00
Q ss_pred CCccccccCCccccccccCCCCCCCCcccccccccCCCcccccccccccCCccccccccCCCCCCCCccccccccchhhc
Q 006562 195 SDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEIN 274 (640)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (640)
+.. +
T Consensus 155 ------------------------------------------~~~-~--------------------------------- 158 (486)
T KOG0550|consen 155 ------------------------------------------LEK-L--------------------------------- 158 (486)
T ss_pred ------------------------------------------hhc-c---------------------------------
Confidence 000 0
Q ss_pred cccCCcccccCCCCCcccccccCCcccccccccccccccCccCCCCCCCCcccccccccCCCCCCchHHHHHhhHHHhhh
Q 006562 275 RQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDM 354 (640)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 354 (640)
+. ..+
T Consensus 159 ----------------------------------------------------------~~-s~s---------------- 163 (486)
T KOG0550|consen 159 ----------------------------------------------------------AP-SHS---------------- 163 (486)
T ss_pred ----------------------------------------------------------cc-ccc----------------
Confidence 00 000
Q ss_pred hHHHHHHHHhhHHHHHhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHH
Q 006562 355 LKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAA 434 (640)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A 434 (640)
..|.-..+.+..+.++...|++++|...--.++++++.+.++++..|.+++..++.+.|
T Consensus 164 ---------------------~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka 222 (486)
T KOG0550|consen 164 ---------------------REPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKA 222 (486)
T ss_pred ---------------------CCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHH
Confidence 00111334456788888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcH------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHhcCC
Q 006562 435 ISDFTEAIQSNPSAG------------EAWKRRGQARAALGESVEAIQDLSKALEFEPNS----ADILHERGIVNFKFKD 498 (640)
Q Consensus 435 ~~~~~~al~~~p~~~------------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~ 498 (640)
+..|++++.++|++. ..+...|.-.++.|++..|.+.|..++.++|++ ...|.+++.+..++|+
T Consensus 223 ~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgr 302 (486)
T KOG0550|consen 223 INHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGR 302 (486)
T ss_pred HHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCC
Confidence 999999999998764 356667888888899999999999999999876 3467888888889999
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcc
Q 006562 499 FNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549 (640)
Q Consensus 499 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 549 (640)
..+|+...+.++.++|....++...|.++..+++|++|++.|+++++...+
T Consensus 303 l~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 303 LREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred chhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 999999999999999988899999999999999999999999999887654
No 42
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=3.5e-18 Score=164.82 Aligned_cols=233 Identities=21% Similarity=0.285 Sum_probs=199.0
Q ss_pred HHhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHccCHHHHHHHHHHH
Q 006562 369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY-------PEALIGRGTARAFQRELEAAISDFTEA 441 (640)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~a 441 (640)
........+ .+...+...+-.++..|.+.+++..+..+++..... ..+...+|..|...++++.|+.+|.++
T Consensus 246 ~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ka 324 (539)
T KOG0548|consen 246 HYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKA 324 (539)
T ss_pred HHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHH
Confidence 455556666 778888999999999999999999999888765432 233445677888889999999999998
Q ss_pred HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 006562 442 IQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYT 521 (640)
Q Consensus 442 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 521 (640)
+..... ..+.......++++.......-.+|.-...-...|..++..|+|..|+..|.+++..+|+++..|.
T Consensus 325 Lte~Rt--------~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYs 396 (539)
T KOG0548|consen 325 LTEHRT--------PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYS 396 (539)
T ss_pred hhhhcC--------HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHH
Confidence 876543 556667778888888888888888888877888899999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCH
Q 006562 522 YLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQH 601 (640)
Q Consensus 522 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~ 601 (640)
++|.+|..+|.+..|+...+.+++++|+...+|..-|.++..+.+|++|.+.|+++++.+|++.++.-.+..+...+...
T Consensus 397 NRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~ 476 (539)
T KOG0548|consen 397 NRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGD 476 (539)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999888888888765444
Q ss_pred HHHHHHHHH
Q 006562 602 KKAIKDLSS 610 (640)
Q Consensus 602 ~~A~~~~~~ 610 (640)
....+..++
T Consensus 477 ~~~ee~~~r 485 (539)
T KOG0548|consen 477 ETPEETKRR 485 (539)
T ss_pred CCHHHHHHh
Confidence 444445554
No 43
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.86 E-value=2.2e-19 Score=173.82 Aligned_cols=236 Identities=17% Similarity=0.151 Sum_probs=180.4
Q ss_pred cCChHHHHHHHHHHHHhCC---C-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Q 006562 394 EGKYASAISIFDQILKEDP---M-YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAI 469 (640)
Q Consensus 394 ~g~~~~A~~~~~~~l~~~~---~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~ 469 (640)
.+..+.++..+.+++...| . .+..++.+|.++...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 3566788888888886433 2 36778999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcc
Q 006562 470 QDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549 (640)
Q Consensus 470 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 549 (640)
..|+++++++|++..++..+|.++...|++++|+..++++++.+|+++..... ..+....+++++|+..+.++....+.
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~-~~l~~~~~~~~~A~~~l~~~~~~~~~ 197 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALW-LYLAESKLDPKQAKENLKQRYEKLDK 197 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHccCCHHHHHHHHHHHHhhCCc
Confidence 99999999999999999999999999999999999999999999988742222 22344567899999999776654332
Q ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHH-------HHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCC-CCHHH
Q 006562 550 FLEAWGHLTQFYQDLANSEKALECLQQV-------LYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP-SNIEC 621 (640)
Q Consensus 550 ~~~~~~~la~~~~~~g~~~~A~~~~~~a-------l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~ 621 (640)
. .|. .+.++...|+...+ ..++.+ .+..|..+.+|+.+|.++...|++++|+.+|+++++.+| +..+.
T Consensus 198 ~--~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~ 273 (296)
T PRK11189 198 E--QWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEH 273 (296)
T ss_pred c--ccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHH
Confidence 2 222 34555556665443 233333 345566778899999999999999999999999999986 66666
Q ss_pred HHHHHHHHHHcCC
Q 006562 622 LYLRASCYHAIGE 634 (640)
Q Consensus 622 ~~~la~~~~~~g~ 634 (640)
.+.+..+....++
T Consensus 274 ~~~~~e~~~~~~~ 286 (296)
T PRK11189 274 RYALLELALLGQD 286 (296)
T ss_pred HHHHHHHHHHHhh
Confidence 6666665554443
No 44
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.86 E-value=3.5e-20 Score=180.00 Aligned_cols=252 Identities=18% Similarity=0.220 Sum_probs=220.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 006562 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGE 464 (640)
Q Consensus 385 ~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 464 (640)
+..|..+++.|+..+|.-.|+.++..+|.+.++|..||.+....++-..|+..++++++++|++..++..||..|...|.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHH-------HHHHHHhcCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHcCCHHH
Q 006562 465 SVEAIQDLSKALEFEPNSADILHE-------RGIVNFKFKDFNAAVEDLSACVKLDK--ENKSAYTYLGLALSSIGEYKK 535 (640)
Q Consensus 465 ~~~A~~~~~~al~~~p~~~~~~~~-------la~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~g~~~~ 535 (640)
-.+|+.++.+-+...|........ ...-......+..-.+.|-.+....| .++++...||.+|...|+|++
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 999999999999887754321110 00011112234455667777777777 789999999999999999999
Q ss_pred HHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccC
Q 006562 536 AEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGID 615 (640)
Q Consensus 536 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 615 (640)
|+.+|+.|+...|++...|..||-.+....+.++|+..|++|+++.|....+++++|..++.+|.|++|.++|-.++.+.
T Consensus 449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred CC----------CHHHHHHHHHHHHHcCCcc
Q 006562 616 PS----------NIECLYLRASCYHAIGEYR 636 (640)
Q Consensus 616 p~----------~~~~~~~la~~~~~~g~~~ 636 (640)
+. +..+|-.|-.++..+++.+
T Consensus 529 ~ks~~~~~~~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 529 RKSRNHNKAPMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred hcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence 44 1257777777777777766
No 45
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.8e-18 Score=160.60 Aligned_cols=264 Identities=18% Similarity=0.156 Sum_probs=215.6
Q ss_pred HHhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHH---------------------------
Q 006562 369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGR--------------------------- 421 (640)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l--------------------------- 421 (640)
+.-.....-|.++..+..+|.+++..|++.+|+..|+++.-.+|......-..
T Consensus 220 l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~t 299 (564)
T KOG1174|consen 220 LMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYT 299 (564)
T ss_pred HHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcc
Confidence 33444556788899999999999999999999999999998888764433333
Q ss_pred -------HHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 006562 422 -------GTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNF 494 (640)
Q Consensus 422 -------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 494 (640)
+...+..+++..|+.+.+++++.+|.+..++...|.++...++.++|+-.|+.+..+.|...+.|..+..+|.
T Consensus 300 a~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYL 379 (564)
T KOG1174|consen 300 ASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYL 379 (564)
T ss_pred hhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHH
Confidence 3344455667778888888888888888888888888888888888888888888888888888888888888
Q ss_pred hcCCHHHHHHHHHHHHHhCCCcHHHHHHHH-HHHHH-cCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHH
Q 006562 495 KFKDFNAAVEDLSACVKLDKENKSAYTYLG-LALSS-IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALE 572 (640)
Q Consensus 495 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la-~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 572 (640)
..|.+.+|.-..+.+++..|.+...+..+| .+++. -.--++|.+.+++++.+.|....+...++.++...|.+.+++.
T Consensus 380 A~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~ 459 (564)
T KOG1174|consen 380 AQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIK 459 (564)
T ss_pred hhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHH
Confidence 888888888888888888888887777775 44443 2335678899999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHcC
Q 006562 573 CLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIG 633 (640)
Q Consensus 573 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 633 (640)
.+++.+...|+ ...+..+|.++...+.+++|..+|..++.++|++..++..+-.+-....
T Consensus 460 LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~~~ 519 (564)
T KOG1174|consen 460 LLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKSDD 519 (564)
T ss_pred HHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhccC
Confidence 99999988876 5678899999999999999999999999999999988888766655444
No 46
>PRK12370 invasion protein regulator; Provisional
Probab=99.85 E-value=8.8e-19 Score=185.10 Aligned_cols=249 Identities=16% Similarity=0.064 Sum_probs=218.2
Q ss_pred hhHHHHHhhhhccCcccHHHHHHHHHHHHHc---------CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHH
Q 006562 364 RNKKFCVTRISKSKSISVDFRLSRGIAQVNE---------GKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAA 434 (640)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~---------g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A 434 (640)
......+.++...+|.++..+..+|.++... +++++|+..++++++.+|+++.++..+|.++...|++++|
T Consensus 278 ~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A 357 (553)
T PRK12370 278 QQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVG 357 (553)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHH
Confidence 3444567788899999999999999877643 3489999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-
Q 006562 435 ISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD- 513 (640)
Q Consensus 435 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~- 513 (640)
+..|+++++.+|+++.+++.+|.++...|++++|+..++++++++|.++..+..++.+++..|++++|+..+++++...
T Consensus 358 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~ 437 (553)
T PRK12370 358 SLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHL 437 (553)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999998877777778888999999999999999875
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 006562 514 KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGL 593 (640)
Q Consensus 514 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~ 593 (640)
|+++..+..+|.++...|++++|...+.+.....|....++..++..|...| +.|...+++.++.....+......+.
T Consensus 438 p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~ 515 (553)
T PRK12370 438 QDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPL 515 (553)
T ss_pred ccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHH
Confidence 7889999999999999999999999999999889998889999999998888 47888787776654433333344788
Q ss_pred HHHhcCCHHHHHHHHHHhhccC
Q 006562 594 LLHGLGQHKKAIKDLSSGLGID 615 (640)
Q Consensus 594 ~~~~~g~~~~A~~~~~~al~~~ 615 (640)
++.-.|+.+.+..+ +++.+..
T Consensus 516 ~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 516 VLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HHHHHhhhHHHHHH-HHhhccc
Confidence 88889999888888 7766554
No 47
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.85 E-value=8.7e-18 Score=171.11 Aligned_cols=228 Identities=13% Similarity=0.030 Sum_probs=190.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHH----HHHHHHHH
Q 006562 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWK----RRGQARAA 461 (640)
Q Consensus 386 ~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~----~la~~~~~ 461 (640)
..+..++..|+++.|...++.+.+..|+++.++..++.++...|++++|...+.+..+....++..+. ....-...
T Consensus 158 ~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~ 237 (409)
T TIGR00540 158 ARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLD 237 (409)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 34788899999999999999999999999999999999999999999999999999987554443321 22222234
Q ss_pred cCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHH--HHHHHHHHHcCCHHH
Q 006562 462 LGESVEAIQDLSKALEFEP----NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAY--TYLGLALSSIGEYKK 535 (640)
Q Consensus 462 ~~~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~--~~la~~~~~~g~~~~ 535 (640)
.+..+++...+..+....| +++..+..++..+...|++++|...++++++..|++.... ..........++.+.
T Consensus 238 ~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~ 317 (409)
T TIGR00540 238 EAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEK 317 (409)
T ss_pred HHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHH
Confidence 4455556678888888777 5889999999999999999999999999999999887532 333344444688899
Q ss_pred HHHHHHHHHccCcccH--HHHHHHHHHHHHhcCHHHHHHHHH--HHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 006562 536 AEEAHLKAIQLDRNFL--EAWGHLTQFYQDLANSEKALECLQ--QVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSG 611 (640)
Q Consensus 536 A~~~~~~a~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~--~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 611 (640)
+++.++++++..|+++ .....+|.++.+.|++++|.++|+ .+++..|+... +..+|.++.+.|+.++|.++++++
T Consensus 318 ~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 318 LEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999999999 888899999999999999999999 57778887555 669999999999999999999998
Q ss_pred hcc
Q 006562 612 LGI 614 (640)
Q Consensus 612 l~~ 614 (640)
+..
T Consensus 397 l~~ 399 (409)
T TIGR00540 397 LGL 399 (409)
T ss_pred HHH
Confidence 653
No 48
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.84 E-value=1.8e-18 Score=149.11 Aligned_cols=207 Identities=22% Similarity=0.213 Sum_probs=159.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 006562 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (640)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 460 (640)
....+.+|..|+..|++..|...++++++.+|++..+|..+|.+|...|+.+.|.+.|++++.++|++.+++.+.|..++
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence 45667777888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 006562 461 ALGESVEAIQDLSKALEF--EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEE 538 (640)
Q Consensus 461 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~ 538 (640)
..|++++|...|++++.. .+..+..+.++|.|..+.|+++.|..+|+++++.+|+.+.....++..++..|++..|..
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence 888888888888887764 344566777788888888888888888888888888887777778888888888888877
Q ss_pred HHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHH
Q 006562 539 AHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA 587 (640)
Q Consensus 539 ~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 587 (640)
++++.....+-....+....++-...|+-+.+-.+=.+.....|...+.
T Consensus 195 ~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 195 YLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 7777777666666777667777777777777777777776777765543
No 49
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.84 E-value=1.4e-20 Score=182.36 Aligned_cols=236 Identities=20% Similarity=0.213 Sum_probs=124.9
Q ss_pred CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 006562 377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG 456 (640)
Q Consensus 377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 456 (640)
.|.++.+|..+|......++++.|+..|++++..++.++..+..++.+ ...+++++|+.++.++.+..+ ++..+....
T Consensus 40 ~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l 117 (280)
T PF13429_consen 40 PPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDG-DPRYLLSAL 117 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccc-ccchhhHHH
Confidence 467789999999999999999999999999999999989888888888 799999999999999988764 566777788
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Q 006562 457 QARAALGESVEAIQDLSKALEFE--PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYK 534 (640)
Q Consensus 457 ~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~ 534 (640)
.++...++++++...+.++.... +.++..+..+|.++...|++++|+..++++++.+|+++.+...++.++...|+++
T Consensus 118 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~ 197 (280)
T PF13429_consen 118 QLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYD 197 (280)
T ss_dssp H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChH
Confidence 88999999999999999987655 6778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhcc
Q 006562 535 KAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI 614 (640)
Q Consensus 535 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 614 (640)
++...+.......|.++..+..+|.++...|++++|+.+|++++...|+++.++..+|.++...|+.++|..++.+++..
T Consensus 198 ~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 198 EAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT------------------
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999998888888899999999999999999999999999999999999999999999999999999999999988753
No 50
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.84 E-value=1.4e-18 Score=149.81 Aligned_cols=209 Identities=21% Similarity=0.181 Sum_probs=196.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 006562 415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNF 494 (640)
Q Consensus 415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 494 (640)
..+...+|.-|+..|++..|...++++++.+|++..+|..+|.+|...|+.+.|.+.|++++.+.|++.+++.+.|..++
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHH
Q 006562 495 KFKDFNAAVEDLSACVKL--DKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALE 572 (640)
Q Consensus 495 ~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 572 (640)
.+|++++|...|++++.. .+..+..+.++|.|..+.|+++.|..+|++++..+|+.+.....++..++..|++..|..
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence 999999999999999975 355678999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHH
Q 006562 573 CLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLY 623 (640)
Q Consensus 573 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 623 (640)
++++.....+-....+.....+-...|+-+.|-.+=.+.....|...+.-.
T Consensus 195 ~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~q~ 245 (250)
T COG3063 195 YLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEYQT 245 (250)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHh
Confidence 999998888888888888889999999999999999998899998776543
No 51
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.84 E-value=2.1e-18 Score=167.03 Aligned_cols=219 Identities=18% Similarity=0.115 Sum_probs=177.9
Q ss_pred CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 006562 377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG 456 (640)
Q Consensus 377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 456 (640)
.+..+..++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|++..++..+|
T Consensus 60 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg 139 (296)
T PRK11189 60 DEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRG 139 (296)
T ss_pred cHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 33457889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH
Q 006562 457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKA 536 (640)
Q Consensus 457 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A 536 (640)
.++...|++++|+..++++++.+|+++.... ...+....+++++|+..+.+.+...+.. .|. .+.++...|+...+
T Consensus 140 ~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~-~~~l~~~~~~~~~A~~~l~~~~~~~~~~--~~~-~~~~~~~lg~~~~~ 215 (296)
T PRK11189 140 IALYYGGRYELAQDDLLAFYQDDPNDPYRAL-WLYLAESKLDPKQAKENLKQRYEKLDKE--QWG-WNIVEFYLGKISEE 215 (296)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHccCCHHHHHHHHHHHHhhCCcc--ccH-HHHHHHHccCCCHH
Confidence 9999999999999999999999999874222 2234456789999999998877554322 222 35556666766443
Q ss_pred --HHHHHHH----HccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHhcC
Q 006562 537 --EEAHLKA----IQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK-RFSKAYHLRGLLLHGLG 599 (640)
Q Consensus 537 --~~~~~~a----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g 599 (640)
...+.+. .+..|....+|+++|.++...|++++|+.+|++++..+| +..+..+.+..+....+
T Consensus 216 ~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~~~ 285 (296)
T PRK11189 216 TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELALLGQ 285 (296)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHh
Confidence 3223322 244566788999999999999999999999999999997 66666665555554433
No 52
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.84 E-value=3.6e-18 Score=161.59 Aligned_cols=199 Identities=22% Similarity=0.237 Sum_probs=131.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 006562 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (640)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 460 (640)
+..++.+|..++..|++++|+..++++++.+|.+..++..+|.++...|++++|+..++++++..|.+..++..+|.++.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 55666777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 006562 461 ALGESVEAIQDLSKALEFE--PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEE 538 (640)
Q Consensus 461 ~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~ 538 (640)
..|++++|+..+++++... +.....+..+|.++...|++++|...+.+++..+|+++..+..+|.++...|++++|..
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 190 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARA 190 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHH
Confidence 7777777777777776542 23344555566666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 006562 539 AHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLY 579 (640)
Q Consensus 539 ~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 579 (640)
.+++++...|.++..+..++.++...|+.++|..+.+.+..
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 191 YLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 66666655555555555556666666666666555554443
No 53
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=3.8e-17 Score=151.88 Aligned_cols=218 Identities=18% Similarity=0.125 Sum_probs=199.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 006562 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (640)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 460 (640)
..-|+--+...+...++..|+.+-+++++.+|.+..++...|.++...|+.++|+-.|+.+..+.|..-+.|..+-.+|.
T Consensus 300 a~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYL 379 (564)
T KOG1174|consen 300 ASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYL 379 (564)
T ss_pred hhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHH
Confidence 45577778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHh-cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 006562 461 ALGESVEAIQDLSKALEFEPNSADILHERG-IVNFK-FKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEE 538 (640)
Q Consensus 461 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la-~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~ 538 (640)
..|.+.+|.-....++...|.+..++..+| .+++. -.--++|.+++++++.+.|....+...++..+...|.+..++.
T Consensus 380 A~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~ 459 (564)
T KOG1174|consen 380 AQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIK 459 (564)
T ss_pred hhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHH
Confidence 999999999999999999999999999886 44443 3456899999999999999999999999999999999999999
Q ss_pred HHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcC
Q 006562 539 AHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG 599 (640)
Q Consensus 539 ~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g 599 (640)
.+++.+...|+ ...+..+|.++...+.+.+|..+|..++.++|.+..+...+-.+-....
T Consensus 460 LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~~~ 519 (564)
T KOG1174|consen 460 LLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKSDD 519 (564)
T ss_pred HHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhccC
Confidence 99999998886 5788999999999999999999999999999998887776655544433
No 54
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.83 E-value=3e-18 Score=162.07 Aligned_cols=203 Identities=19% Similarity=0.218 Sum_probs=189.3
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006562 414 YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVN 493 (640)
Q Consensus 414 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 493 (640)
.+..+..+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|+..+++++...|.+..++..+|.++
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHH
Q 006562 494 FKFKDFNAAVEDLSACVKLD--KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKAL 571 (640)
Q Consensus 494 ~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~ 571 (640)
...|++++|+..+.+++... +.....+..+|.++...|++++|...+.+++..+|.++..+..+|.++...|++++|.
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999854 4567788899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCC
Q 006562 572 ECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP 616 (640)
Q Consensus 572 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 616 (640)
.++++++...|..+..+..++.++...|+.++|..+.+.+....|
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 190 AYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 999999999888889999999999999999999999887766543
No 55
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.83 E-value=1.1e-16 Score=160.64 Aligned_cols=242 Identities=21% Similarity=0.230 Sum_probs=201.3
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006562 397 YASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP-SAGEAWKRRGQARAALGESVEAIQDLSKA 475 (640)
Q Consensus 397 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~a 475 (640)
..++++.++++++.+|+|+.+.+.++.-|...++.+.|..+.+++++.++ +++.+|..++.++...+++.+|+...+.+
T Consensus 460 h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~a 539 (799)
T KOG4162|consen 460 HKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAA 539 (799)
T ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 56889999999999999999999999999999999999999999999954 57899999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHH---------HHHHHHcCCHHHHHHHHHHHHcc
Q 006562 476 LEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYL---------GLALSSIGEYKKAEEAHLKAIQL 546 (640)
Q Consensus 476 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l---------a~~~~~~g~~~~A~~~~~~a~~~ 546 (640)
+...|++-........+-...++.++|+..+...+.+....+.+-..+ +......++..+|+....++...
T Consensus 540 l~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l 619 (799)
T KOG4162|consen 540 LEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSL 619 (799)
T ss_pred HHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHH
Confidence 999999877777777777789999999999888877654333222222 22222233444444444443321
Q ss_pred ---------------------Cccc-----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCC
Q 006562 547 ---------------------DRNF-----LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQ 600 (640)
Q Consensus 547 ---------------------~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~ 600 (640)
.|.. ...|...+..+...++.++|..++.++-..+|-.+..|+..|.++...|+
T Consensus 620 ~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~ 699 (799)
T KOG4162|consen 620 VASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQ 699 (799)
T ss_pred HHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHh
Confidence 1111 35677889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCCcccc
Q 006562 601 HKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREA 638 (640)
Q Consensus 601 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 638 (640)
+.+|.+.|..++.++|+++.....+|.++.+.|+..-|
T Consensus 700 ~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la 737 (799)
T KOG4162|consen 700 LEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLA 737 (799)
T ss_pred hHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchH
Confidence 99999999999999999999999999999999976544
No 56
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.83 E-value=1.1e-17 Score=170.41 Aligned_cols=269 Identities=14% Similarity=0.027 Sum_probs=218.0
Q ss_pred HhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Q 006562 370 VTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP-EALIGRGTARAFQRELEAAISDFTEAIQSNPSA 448 (640)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 448 (640)
+.+..+..|.....++..|.++...|+++.|..++.++.+..|++. .+....+.++...|+++.|...+++.++..|++
T Consensus 107 l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~ 186 (409)
T TIGR00540 107 IAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRH 186 (409)
T ss_pred HHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 4445556666677778888889999999999999999988888874 466667888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH----HHHHHHHhcCCHHHHHHHHHHHHHhCC----CcHHHH
Q 006562 449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILH----ERGIVNFKFKDFNAAVEDLSACVKLDK----ENKSAY 520 (640)
Q Consensus 449 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~----~la~~~~~~~~~~~A~~~~~~al~~~~----~~~~~~ 520 (640)
+.++..++.++...|++++|...+.+..+....++.... ....-+...+..+++...+.++....| +++..+
T Consensus 187 ~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~ 266 (409)
T TIGR00540 187 KEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALK 266 (409)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHH
Confidence 999999999999999999999999988877554433221 222222344455556667777777777 588999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHH--HHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh--HHHHHHHHHHH
Q 006562 521 TYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAW--GHLTQFYQDLANSEKALECLQQVLYIDKRFS--KAYHLRGLLLH 596 (640)
Q Consensus 521 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~--~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~la~~~~ 596 (640)
..++..+...|++++|...++++++..|++.... ..........++.+.++..++++++..|+++ .....+|+++.
T Consensus 267 ~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~ 346 (409)
T TIGR00540 267 IALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLM 346 (409)
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Confidence 9999999999999999999999999999886532 2333334446888999999999999999999 88999999999
Q ss_pred hcCCHHHHHHHHH--HhhccCCCCHHHHHHHHHHHHHcCCccccc
Q 006562 597 GLGQHKKAIKDLS--SGLGIDPSNIECLYLRASCYHAIGEYREAV 639 (640)
Q Consensus 597 ~~g~~~~A~~~~~--~al~~~p~~~~~~~~la~~~~~~g~~~~Al 639 (640)
+.|++++|.++|+ .+++..|+... +..+|.++.++|+.++|.
T Consensus 347 ~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~ 390 (409)
T TIGR00540 347 KHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAA 390 (409)
T ss_pred HcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHH
Confidence 9999999999999 57888898655 559999999999988874
No 57
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.83 E-value=1.8e-16 Score=155.61 Aligned_cols=257 Identities=14% Similarity=0.081 Sum_probs=177.1
Q ss_pred HhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH
Q 006562 370 VTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG 449 (640)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 449 (640)
+..++.-.|..-..|+..+..--..|..++-..++++++...|.....|+..+..++..|+...|...+..+++.+|++.
T Consensus 539 ya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnse 618 (913)
T KOG0495|consen 539 YAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSE 618 (913)
T ss_pred HHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcH
Confidence 44445566666666666666666666666666777777777776666666667777777777777777777777777777
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 006562 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS 529 (640)
Q Consensus 450 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 529 (640)
++|+..-.+.....+++.|...|.++....| ...+|+-.+.+...+++.++|+.+++++++..|.....|..+|.++..
T Consensus 619 eiwlaavKle~en~e~eraR~llakar~~sg-TeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~ 697 (913)
T KOG0495|consen 619 EIWLAAVKLEFENDELERARDLLAKARSISG-TERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQ 697 (913)
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHhccCC-cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHH
Confidence 7776666666666777777777777666555 335666666666667777777777777777777777777777777777
Q ss_pred cCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Q 006562 530 IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLS 609 (640)
Q Consensus 530 ~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 609 (640)
+++.+.|...|...++..|..+..|..++.+-...|..-.|..+++++.-.+|.+...|.....+-.+.|+.+.|...+.
T Consensus 698 ~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lma 777 (913)
T KOG0495|consen 698 MENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMA 777 (913)
T ss_pred HHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HhhccCCCCHHHHHHHHH
Q 006562 610 SGLGIDPSNIECLYLRAS 627 (640)
Q Consensus 610 ~al~~~p~~~~~~~~la~ 627 (640)
+|++-.|++...|..-..
T Consensus 778 kALQecp~sg~LWaEaI~ 795 (913)
T KOG0495|consen 778 KALQECPSSGLLWAEAIW 795 (913)
T ss_pred HHHHhCCccchhHHHHHH
Confidence 777777776655544333
No 58
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.82 E-value=1.1e-18 Score=157.21 Aligned_cols=248 Identities=13% Similarity=0.069 Sum_probs=224.8
Q ss_pred HHHHcCChHHHHHHHHHHHHhC---CC-------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 006562 390 AQVNEGKYASAISIFDQILKED---PM-------YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR 459 (640)
Q Consensus 390 ~~~~~g~~~~A~~~~~~~l~~~---~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 459 (640)
+++..+|...|-......++.+ |. +.+--..+|.||+..|.+.+|...++.+++..| .++.+..++.+|
T Consensus 188 ~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY 266 (478)
T KOG1129|consen 188 LFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVY 266 (478)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHH
Confidence 4555667777776666655432 11 234446799999999999999999999999876 678888999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 006562 460 AALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEA 539 (640)
Q Consensus 460 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 539 (640)
....++..|+..+...++..|.+...+..+++++..++++++|.++|+.+++.+|.+.++.-.+|..|+..++.+-|+.+
T Consensus 267 ~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~Alry 346 (478)
T KOG1129|consen 267 QRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRY 346 (478)
T ss_pred HHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCC
Q 006562 540 HLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK---RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP 616 (640)
Q Consensus 540 ~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 616 (640)
|++.++..-.+++.+.++|.+.+..++++-++..|++++.... .-.++|+++|.+....|++.-|...|+-++..+|
T Consensus 347 YRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~ 426 (478)
T KOG1129|consen 347 YRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA 426 (478)
T ss_pred HHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc
Confidence 9999999999999999999999999999999999999998654 3467999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCcccc
Q 006562 617 SNIECLYLRASCYHAIGEYREA 638 (640)
Q Consensus 617 ~~~~~~~~la~~~~~~g~~~~A 638 (640)
++.+++.+||.+-.+.|+.++|
T Consensus 427 ~h~ealnNLavL~~r~G~i~~A 448 (478)
T KOG1129|consen 427 QHGEALNNLAVLAARSGDILGA 448 (478)
T ss_pred chHHHHHhHHHHHhhcCchHHH
Confidence 9999999999999999998876
No 59
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.82 E-value=3.7e-17 Score=178.96 Aligned_cols=257 Identities=10% Similarity=-0.038 Sum_probs=220.9
Q ss_pred cccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcHHHHHHH
Q 006562 378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKED-PMYPEALIGRGTARAFQRELEAAISDFTEAIQSN-PSAGEAWKRR 455 (640)
Q Consensus 378 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 455 (640)
+.+...|..+...|...|++++|+.+|++..+.. .-+...+..+...+...|++++|...+..+++.. +.+..++..+
T Consensus 287 ~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~L 366 (697)
T PLN03081 287 EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTAL 366 (697)
T ss_pred CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHH
Confidence 3467788889999999999999999999987643 2246788899999999999999999999999876 5567788899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHH
Q 006562 456 GQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD-KENKSAYTYLGLALSSIGEYK 534 (640)
Q Consensus 456 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~ 534 (640)
...|.+.|++++|...|++..+ .+...|..+...|.+.|+.++|++.|++..... .-+...+..+...+...|..+
T Consensus 367 i~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~ 443 (697)
T PLN03081 367 VDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSE 443 (697)
T ss_pred HHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHH
Confidence 9999999999999999998754 356789999999999999999999999988753 224667788888999999999
Q ss_pred HHHHHHHHHHccCc--ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 006562 535 KAEEAHLKAIQLDR--NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGL 612 (640)
Q Consensus 535 ~A~~~~~~a~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 612 (640)
+|..+|+.+.+..+ .+...|..+...+.+.|++++|.+.+++.- .. .+...|..+...+...|+++.|...+++.+
T Consensus 444 ~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~-~~-p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~ 521 (697)
T PLN03081 444 QGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP-FK-PTVNMWAALLTACRIHKNLELGRLAAEKLY 521 (697)
T ss_pred HHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC-CC-CCHHHHHHHHHHHHHcCCcHHHHHHHHHHh
Confidence 99999999876432 235678889999999999999999987652 23 346679999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHHHHHHcCCccccc
Q 006562 613 GIDPSNIECLYLRASCYHAIGEYREAV 639 (640)
Q Consensus 613 ~~~p~~~~~~~~la~~~~~~g~~~~Al 639 (640)
++.|++...+..++.+|...|++++|.
T Consensus 522 ~~~p~~~~~y~~L~~~y~~~G~~~~A~ 548 (697)
T PLN03081 522 GMGPEKLNNYVVLLNLYNSSGRQAEAA 548 (697)
T ss_pred CCCCCCCcchHHHHHHHHhCCCHHHHH
Confidence 999999999999999999999999885
No 60
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.81 E-value=1.2e-16 Score=145.69 Aligned_cols=252 Identities=15% Similarity=0.105 Sum_probs=148.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-
Q 006562 384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL- 462 (640)
Q Consensus 384 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~- 462 (640)
.+.+|.+.+..-.|++|++.|.+++..+|+....-..+|.||+++.-|+-+.+.+.-.+...|+.+-+....+...++.
T Consensus 154 qLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ 233 (557)
T KOG3785|consen 154 QLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLI 233 (557)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhh
Confidence 3455666666677888888888888877777777777888888888888888888888888888777766666555443
Q ss_pred -CCHHHH----------------HHHHH----------HHHHhCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006562 463 -GESVEA----------------IQDLS----------KALEFEPN----SADILHERGIVNFKFKDFNAAVEDLSACVK 511 (640)
Q Consensus 463 -~~~~~A----------------~~~~~----------~al~~~p~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 511 (640)
|+..++ ...++ -+++.-|. -|++..++...|.++++..+|....+ .
T Consensus 234 ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~K---d 310 (557)
T KOG3785|consen 234 NGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCK---D 310 (557)
T ss_pred ccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHh---h
Confidence 221111 11110 11122221 24567777777888888888777655 3
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH---HccC------cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Q 006562 512 LDKENKSAYTYLGLALSSIGEYKKAEEAHLKA---IQLD------RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK 582 (640)
Q Consensus 512 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a---~~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 582 (640)
++|..|.-+...|.+....|+--...+.+.-+ +++- -+.......++.+++...++++.+.++...-....
T Consensus 311 l~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~ 390 (557)
T KOG3785|consen 311 LDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFT 390 (557)
T ss_pred cCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56777777777777777766543333332222 1111 11122334455555555566666666665555555
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHhhccC-CCCHHHHHHHHHHHHHcCCcccc
Q 006562 583 RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGID-PSNIECLYLRASCYHAIGEYREA 638 (640)
Q Consensus 583 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A 638 (640)
++....+++|+++...|++.+|.+.|-+.-... .+.......+|.||...|.++-|
T Consensus 391 NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lA 447 (557)
T KOG3785|consen 391 NDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLA 447 (557)
T ss_pred CcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHH
Confidence 555666666666666666666666665543333 22233444566666666655443
No 61
>PLN02789 farnesyltranstransferase
Probab=99.81 E-value=3.9e-17 Score=157.21 Aligned_cols=237 Identities=16% Similarity=0.133 Sum_probs=210.6
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH--
Q 006562 389 IAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQR-ELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGES-- 465 (640)
Q Consensus 389 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~-- 465 (640)
.++...+.+++|+..+.++++.+|.+..+|..++.++...| ++++++..++++++.+|++..+|...+.++...|+.
T Consensus 45 a~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhh
Confidence 34666789999999999999999999999999999999998 689999999999999999999999999999988874
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc---CCH----HHHHH
Q 006562 466 VEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSI---GEY----KKAEE 538 (640)
Q Consensus 466 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~---g~~----~~A~~ 538 (640)
++++.++.++++.+|++..+|..++.++...|++++++.++.++++.+|.+..+|..++.+.... |.+ ++++.
T Consensus 125 ~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~ 204 (320)
T PLN02789 125 NKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELK 204 (320)
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999998776 333 57888
Q ss_pred HHHHHHccCcccHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcC---------------
Q 006562 539 AHLKAIQLDRNFLEAWGHLTQFYQD----LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG--------------- 599 (640)
Q Consensus 539 ~~~~a~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g--------------- 599 (640)
+..+++..+|++..+|..++.++.. .++..+|+..+.+++...|.++.++..++.+|....
T Consensus 205 y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~ 284 (320)
T PLN02789 205 YTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAE 284 (320)
T ss_pred HHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhcccc
Confidence 8899999999999999999999987 456678999999999999999999999999998632
Q ss_pred ---CHHHHHHHHHHhhccCCCCHHHHHHH
Q 006562 600 ---QHKKAIKDLSSGLGIDPSNIECLYLR 625 (640)
Q Consensus 600 ---~~~~A~~~~~~al~~~p~~~~~~~~l 625 (640)
..++|...+...-+.+|-....|...
T Consensus 285 ~~~~~~~a~~~~~~l~~~d~ir~~yw~~~ 313 (320)
T PLN02789 285 ELSDSTLAQAVCSELEVADPMRRNYWAWR 313 (320)
T ss_pred ccccHHHHHHHHHHHHhhCcHHHHHHHHH
Confidence 34678888888767777666655543
No 62
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.81 E-value=4e-16 Score=158.01 Aligned_cols=226 Identities=13% Similarity=0.035 Sum_probs=184.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHH--------HHHH
Q 006562 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWK--------RRGQ 457 (640)
Q Consensus 386 ~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~--------~la~ 457 (640)
..+..+...|+++.|+..++++.+.+|+++.++..++.+|...|++++|+..+.+..+..+.++.... .+..
T Consensus 158 ~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~ 237 (398)
T PRK10747 158 TRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMD 237 (398)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 34778889999999999999999999999999999999999999999999999999887766543222 2122
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Q 006562 458 ARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAE 537 (640)
Q Consensus 458 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~ 537 (640)
......+.+.....++......|+++.+...++..+...|+.++|...++++++. |.++......+.+ ..++.++++
T Consensus 238 ~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al 314 (398)
T PRK10747 238 QAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLE 314 (398)
T ss_pred HHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHH
Confidence 2222333444555555555556778999999999999999999999999999995 4455554444444 448999999
Q ss_pred HHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccC
Q 006562 538 EAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGID 615 (640)
Q Consensus 538 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 615 (640)
..+++.++..|+++..+..+|.++...|++++|..+|+++++..|+. ..+..++.++.++|+.++|..+|++++.+.
T Consensus 315 ~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 315 KVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999885 446689999999999999999999998754
No 63
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.80 E-value=1.8e-16 Score=160.54 Aligned_cols=253 Identities=13% Similarity=0.030 Sum_probs=202.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 006562 383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEAL-IGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAA 461 (640)
Q Consensus 383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 461 (640)
.++..+......|+++.|..++.++.+.+|++..+. ...+.++...|+++.|...++++.+..|+++.++..++.+|..
T Consensus 120 ~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~ 199 (398)
T PRK10747 120 NYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIR 199 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 344446666888999999999999988888875333 3458888889999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHH--------HHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q 006562 462 LGESVEAIQDLSKALEFEPNSADILH--------ERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEY 533 (640)
Q Consensus 462 ~~~~~~A~~~~~~al~~~p~~~~~~~--------~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~ 533 (640)
.|+|++|+..+.+..+..+.++.... .+........+.+...+.++..-...|+++.+...++..+...|+.
T Consensus 200 ~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~ 279 (398)
T PRK10747 200 TGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDH 279 (398)
T ss_pred HHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCH
Confidence 99999999888888877665443222 1111122233344444555554455677899999999999999999
Q ss_pred HHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 006562 534 KKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLG 613 (640)
Q Consensus 534 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 613 (640)
++|...+++++.. +.++......+.+ ..++.++++..+++.++..|+++..+..+|.++...|++++|..+|+++++
T Consensus 280 ~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~ 356 (398)
T PRK10747 280 DTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALK 356 (398)
T ss_pred HHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 9999999999995 4456555555544 449999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCccccc
Q 006562 614 IDPSNIECLYLRASCYHAIGEYREAV 639 (640)
Q Consensus 614 ~~p~~~~~~~~la~~~~~~g~~~~Al 639 (640)
..|++. .+..++.++.++|+.++|.
T Consensus 357 ~~P~~~-~~~~La~~~~~~g~~~~A~ 381 (398)
T PRK10747 357 QRPDAY-DYAWLADALDRLHKPEEAA 381 (398)
T ss_pred cCCCHH-HHHHHHHHHHHcCCHHHHH
Confidence 999854 4668999999999998874
No 64
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.79 E-value=1.9e-14 Score=159.43 Aligned_cols=233 Identities=16% Similarity=0.037 Sum_probs=159.2
Q ss_pred ccHHHHHHHHHHHHHcCChHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcHHHHH
Q 006562 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKE----DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN-PSAGEAWK 453 (640)
Q Consensus 379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~ 453 (640)
.+...+..+...+.+.|++++|.++|.++... .|+ ...+..+...|.+.|++++|.+.|+++.+.+ +.+...|.
T Consensus 540 PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tyn 618 (1060)
T PLN03218 540 PDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYT 618 (1060)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHH
Confidence 34556666677777777777777777777652 333 5566667777777777777777777777665 34556677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHc
Q 006562 454 RRGQARAALGESVEAIQDLSKALEF--EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD-KENKSAYTYLGLALSSI 530 (640)
Q Consensus 454 ~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~ 530 (640)
.+...|.+.|++++|+..|.++... .| +...+..+...+.+.|++++|.+.+..+.+.. +.+...+..+...|.+.
T Consensus 619 sLI~ay~k~G~~deAl~lf~eM~~~Gv~P-D~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~ 697 (1060)
T PLN03218 619 IAVNSCSQKGDWDFALSIYDDMKKKGVKP-DEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNA 697 (1060)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence 7777777777777777777777665 33 34566777777777777777777777777654 33556777777777777
Q ss_pred CCHHHHHHHHHHHHcc--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHhcCCHHHHHHH
Q 006562 531 GEYKKAEEAHLKAIQL--DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYID-KRFSKAYHLRGLLLHGLGQHKKAIKD 607 (640)
Q Consensus 531 g~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~ 607 (640)
|++++|...|+++... .| +...|..+...|.+.|++++|+++|++..... ..+...|..+...+.+.|++++|...
T Consensus 698 G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l 776 (1060)
T PLN03218 698 KNWKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDL 776 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 7777777777776543 33 35667777777777777777777777765432 22345566666777777777777777
Q ss_pred HHHhhcc
Q 006562 608 LSSGLGI 614 (640)
Q Consensus 608 ~~~al~~ 614 (640)
+..+.+.
T Consensus 777 ~~~M~k~ 783 (1060)
T PLN03218 777 LSQAKED 783 (1060)
T ss_pred HHHHHHc
Confidence 7777653
No 65
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.78 E-value=2.7e-16 Score=142.00 Aligned_cols=231 Identities=19% Similarity=0.201 Sum_probs=139.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHH
Q 006562 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA-----GEAWKRRGQARA 460 (640)
Q Consensus 386 ~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~ 460 (640)
..|..++-..+.++|++.|-.+++.+|...++.+.+|..+...|..+.|+..-+..+.. |+. ..+...+|.-|+
T Consensus 40 v~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym 118 (389)
T COG2956 40 VKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYM 118 (389)
T ss_pred HhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHH
Confidence 34555555666666666666666666666666666666666666666666665554432 332 234555666666
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHcCCHHH
Q 006562 461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN-----KSAYTYLGLALSSIGEYKK 535 (640)
Q Consensus 461 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-----~~~~~~la~~~~~~g~~~~ 535 (640)
..|-++.|...|........--..+...+..+|....+|++|+...++..++.+.. ...+..++..+....+.+.
T Consensus 119 ~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~ 198 (389)
T COG2956 119 AAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDR 198 (389)
T ss_pred HhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHH
Confidence 66666666666666555444444556666666666666666666666666655543 2344455555555666666
Q ss_pred HHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHhhcc
Q 006562 536 AEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF-SKAYHLRGLLLHGLGQHKKAIKDLSSGLGI 614 (640)
Q Consensus 536 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 614 (640)
|...+.++++.+|....+-..+|.++...|+|+.|++.++.+++.+|+. +.+...+..+|.++|+.++.+.++.++.+.
T Consensus 199 A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 199 ARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 6666666666666666666666666666666666666666666666654 345556666666666666666666666655
Q ss_pred CCC
Q 006562 615 DPS 617 (640)
Q Consensus 615 ~p~ 617 (640)
.++
T Consensus 279 ~~g 281 (389)
T COG2956 279 NTG 281 (389)
T ss_pred cCC
Confidence 554
No 66
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.78 E-value=3.2e-18 Score=166.43 Aligned_cols=221 Identities=19% Similarity=0.249 Sum_probs=195.6
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Q 006562 419 IGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKD 498 (640)
Q Consensus 419 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 498 (640)
+..|..+++.|+..+|.-.|+.+++.+|.+.++|..||.+....++-..|+..++++++++|++..++..||..|...|.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHH-------HHHHHHHcCCHHHHHHHHHHHHccCc--ccHHHHHHHHHHHHHhcCHHH
Q 006562 499 FNAAVEDLSACVKLDKENKSAYTY-------LGLALSSIGEYKKAEEAHLKAIQLDR--NFLEAWGHLTQFYQDLANSEK 569 (640)
Q Consensus 499 ~~~A~~~~~~al~~~~~~~~~~~~-------la~~~~~~g~~~~A~~~~~~a~~~~~--~~~~~~~~la~~~~~~g~~~~ 569 (640)
-.+|+.++.+-+...|........ ...-......+..-.+.|-.+....| .++++...||.+|...|+|++
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 999999999999887653211110 00000111123345567777777777 689999999999999999999
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCCccccc
Q 006562 570 ALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAV 639 (640)
Q Consensus 570 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Al 639 (640)
|+.+|+.++...|.+...|..||-.+..-.+.++|+..|.+|+++.|+...++++||.+++.+|.|++|+
T Consensus 449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~ 518 (579)
T KOG1125|consen 449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAV 518 (579)
T ss_pred HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999986
No 67
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.78 E-value=1.6e-18 Score=156.07 Aligned_cols=104 Identities=30% Similarity=0.434 Sum_probs=96.7
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHccc-CchhHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHH
Q 006562 34 ASAITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA 112 (640)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~y~~Ai~~y~~ai~~~-~~~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~ 112 (640)
.-+.+-+-++.+++..++|++|+..|++||+++ .|+..|+|||.+|.++|+|+.|+.+|+.||.+||++.++|.++|.+
T Consensus 79 ~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A 158 (304)
T KOG0553|consen 79 ALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLA 158 (304)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 344555678889999999999999999999999 7778899999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhccCCh
Q 006562 113 FSALGRKEEALSVWEKGYEHALHQS 137 (640)
Q Consensus 113 y~~~g~~~~A~~~~~~al~~~~~~~ 137 (640)
|+.+|++++|+..|++||+++|+..
T Consensus 159 ~~~~gk~~~A~~aykKaLeldP~Ne 183 (304)
T KOG0553|consen 159 YLALGKYEEAIEAYKKALELDPDNE 183 (304)
T ss_pred HHccCcHHHHHHHHHhhhccCCCcH
Confidence 9999999999999999988888775
No 68
>PLN03077 Protein ECB2; Provisional
Probab=99.78 E-value=1.3e-15 Score=171.00 Aligned_cols=253 Identities=13% Similarity=0.000 Sum_probs=205.7
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHH
Q 006562 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP-SAGEAWKRRGQA 458 (640)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~ 458 (640)
+...|..+...+...|++.+|+.+|++.....+.+...+..+-..+...|+.+.+.+.+..+++... .+...+..+-..
T Consensus 454 d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~ 533 (857)
T PLN03077 454 DVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDL 533 (857)
T ss_pred CeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHH
Confidence 4456666777778888888888888888765444566666677777788888888888887776542 234455667789
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHH
Q 006562 459 RAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD--KENKSAYTYLGLALSSIGEYKKA 536 (640)
Q Consensus 459 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~g~~~~A 536 (640)
|.+.|+.++|...|+.. +.+...|..+...|...|+.++|+..|++..+.. |+ ...+..+-..+...|.+++|
T Consensus 534 y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea 608 (857)
T PLN03077 534 YVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRSGMVTQG 608 (857)
T ss_pred HHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhcChHHHH
Confidence 99999999999999886 5577899999999999999999999999988753 44 44566666788999999999
Q ss_pred HHHHHHHHccCc--ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhcc
Q 006562 537 EEAHLKAIQLDR--NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI 614 (640)
Q Consensus 537 ~~~~~~a~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 614 (640)
..+|+.+....+ .+...|..+..++.+.|++++|.+.+++. ...|+ +.+|..+-..+...|+.+.+....++++++
T Consensus 609 ~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l 686 (857)
T PLN03077 609 LEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFEL 686 (857)
T ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Confidence 999999884322 23578899999999999999999999886 24444 677888877888899999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCccccc
Q 006562 615 DPSNIECLYLRASCYHAIGEYREAV 639 (640)
Q Consensus 615 ~p~~~~~~~~la~~~~~~g~~~~Al 639 (640)
.|++...+..++.+|...|++++|.
T Consensus 687 ~p~~~~~y~ll~n~ya~~g~~~~a~ 711 (857)
T PLN03077 687 DPNSVGYYILLCNLYADAGKWDEVA 711 (857)
T ss_pred CCCCcchHHHHHHHHHHCCChHHHH
Confidence 9999999999999999999999874
No 69
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.78 E-value=2.9e-14 Score=157.91 Aligned_cols=246 Identities=14% Similarity=-0.016 Sum_probs=195.8
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCcHHHHHHHH
Q 006562 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKED-PMYPEALIGRGTARAFQRELEAAISDFTEAIQS--NPSAGEAWKRRG 456 (640)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la 456 (640)
+...+..+...|.+.|++++|.++|+.+.+.+ +.+...|..+...|.+.|++++|+..|.+..+. .| +...|..+.
T Consensus 578 D~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~P-D~~TynsLI 656 (1060)
T PLN03218 578 DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP-DEVFFSALV 656 (1060)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHH
Confidence 45677778888999999999999999999876 456789999999999999999999999999876 34 466888899
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHH
Q 006562 457 QARAALGESVEAIQDLSKALEFE-PNSADILHERGIVNFKFKDFNAAVEDLSACVKLD-KENKSAYTYLGLALSSIGEYK 534 (640)
Q Consensus 457 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~ 534 (640)
..+...|++++|...+..+.+.. +.+...+..+...|.+.|++++|...|++..... ..+...|..+...|.+.|+++
T Consensus 657 ~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~e 736 (1060)
T PLN03218 657 DVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLP 736 (1060)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHH
Confidence 99999999999999999999864 3467789999999999999999999999987642 235678999999999999999
Q ss_pred HHHHHHHHHHcc--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 006562 535 KAEEAHLKAIQL--DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK-RFSKAYHLRGLLLHGLGQHKKAIKDLSSG 611 (640)
Q Consensus 535 ~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a 611 (640)
+|.+.|+++... .| +...|..+...+.+.|++++|..++..+++... .+...+..+-.++. +++++|....+..
T Consensus 737 eAlelf~eM~~~Gi~P-d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v 813 (1060)
T PLN03218 737 KALEVLSEMKRLGLCP-NTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPV 813 (1060)
T ss_pred HHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhh
Confidence 999999998754 34 466777778899999999999999999987543 22334443332222 4677787777766
Q ss_pred hccCCCC---HHHHHHHHHHH
Q 006562 612 LGIDPSN---IECLYLRASCY 629 (640)
Q Consensus 612 l~~~p~~---~~~~~~la~~~ 629 (640)
+..++.+ ...|...|..+
T Consensus 814 ~~f~~g~~~~~n~w~~~Al~l 834 (1060)
T PLN03218 814 VSFDSGRPQIENKWTSWALMV 834 (1060)
T ss_pred hhhhccccccccchHHHHHHH
Confidence 6555433 23455555443
No 70
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.78 E-value=5.9e-17 Score=166.00 Aligned_cols=248 Identities=14% Similarity=0.077 Sum_probs=202.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH--------------------HHHHHHHHHH-----HHccCHHHHHHHH
Q 006562 384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYP--------------------EALIGRGTAR-----AFQRELEAAISDF 438 (640)
Q Consensus 384 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~--------------------~~~~~la~~~-----~~~g~~~~A~~~~ 438 (640)
.+.+|.+......|.+|...+.......-+++ ...+..+..+ ..+.+...|+..|
T Consensus 402 ~~akgl~~ie~~~y~Daa~tl~lv~~~s~nd~slselswc~~~~~ek~mdva~~~~~e~~~~w~a~~~~rK~~~~al~al 481 (1238)
T KOG1127|consen 402 QRAKGLAPIEANVYTDAAITLDLVSSLSFNDDSLSELSWCLPRALEKMMDVALLLECENSEFWVALGCMRKNSALALHAL 481 (1238)
T ss_pred hhhcchhHHHHhhchHHHHHHHHHHHhhcCchhhhHhhHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 56667777778888888888877766542211 1111111111 1234578899999
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc--
Q 006562 439 TEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN-- 516 (640)
Q Consensus 439 ~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-- 516 (640)
-++++++|..+.++..+|.+|....+...|..+|+++.++++.+..+....+..|....+++.|....-.+-+..|..
T Consensus 482 i~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~ 561 (1238)
T KOG1127|consen 482 IRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFAC 561 (1238)
T ss_pred HHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999876666666543
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 006562 517 KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLH 596 (640)
Q Consensus 517 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 596 (640)
...|..+|..|...++...|+..|+.+++.+|.+...|..+|.+|...|++..|++.|.++..++|.+....+..+.+..
T Consensus 562 k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ec 641 (1238)
T KOG1127|consen 562 KENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMEC 641 (1238)
T ss_pred HhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHH
Confidence 35566689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH
Q 006562 597 GLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHA 631 (640)
Q Consensus 597 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 631 (640)
.+|.|.+|+..+...+............++.++.+
T Consensus 642 d~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir 676 (1238)
T KOG1127|consen 642 DNGKYKEALDALGLIIYAFSLERTGQNGLAESVIR 676 (1238)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 99999999999998887655544444455555443
No 71
>PLN02789 farnesyltranstransferase
Probab=99.77 E-value=1e-16 Score=154.23 Aligned_cols=222 Identities=16% Similarity=0.160 Sum_probs=201.1
Q ss_pred cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-CHHHHHHHH
Q 006562 394 EGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG-ESVEAIQDL 472 (640)
Q Consensus 394 ~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~ 472 (640)
.++|.+|..+|+.++.. .+.+++|+..+.++++.+|.+..+|...+.++..+| .+++++..+
T Consensus 33 ~~~~~~a~~~~ra~l~~-----------------~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~ 95 (320)
T PLN02789 33 TPEFREAMDYFRAVYAS-----------------DERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFA 95 (320)
T ss_pred CHHHHHHHHHHHHHHHc-----------------CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHH
Confidence 46677888887776653 467889999999999999999999999999999998 689999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccc
Q 006562 473 SKALEFEPNSADILHERGIVNFKFKDF--NAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF 550 (640)
Q Consensus 473 ~~al~~~p~~~~~~~~la~~~~~~~~~--~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 550 (640)
.+++..+|++..+|...+.++...|+. ++++.++.++++.+|++..+|..++.++...|++++++.++.++++.+|.+
T Consensus 96 ~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N 175 (320)
T PLN02789 96 EDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRN 175 (320)
T ss_pred HHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCc
Confidence 999999999999999999999998874 788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh---cCH----HHHHHHHHHHHHhCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHhhccCCCCH
Q 006562 551 LEAWGHLTQFYQDL---ANS----EKALECLQQVLYIDKRFSKAYHLRGLLLHG----LGQHKKAIKDLSSGLGIDPSNI 619 (640)
Q Consensus 551 ~~~~~~la~~~~~~---g~~----~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~ 619 (640)
..+|...+.+.... |.+ ++++.+..+++..+|++..+|..++.++.. .++..+|...+.+++...|++.
T Consensus 176 ~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~ 255 (320)
T PLN02789 176 NSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHV 255 (320)
T ss_pred hhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcH
Confidence 99999999998776 333 578899999999999999999999999988 4567789999999999999999
Q ss_pred HHHHHHHHHHHHc
Q 006562 620 ECLYLRASCYHAI 632 (640)
Q Consensus 620 ~~~~~la~~~~~~ 632 (640)
.++..|+.+|...
T Consensus 256 ~al~~l~d~~~~~ 268 (320)
T PLN02789 256 FALSDLLDLLCEG 268 (320)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999999763
No 72
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.77 E-value=7.7e-17 Score=165.14 Aligned_cols=267 Identities=15% Similarity=0.115 Sum_probs=184.0
Q ss_pred HhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH
Q 006562 370 VTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG 449 (640)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 449 (640)
++.....+|.+.+.|..+|.+|...|.|..|++.|.++..++|.+..+.+..+.+....|.|.+|+..+...+.......
T Consensus 585 fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~ 664 (1238)
T KOG1127|consen 585 FQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLER 664 (1238)
T ss_pred HHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 34445667777777777777777777777777777777777777777777777777777777777777777776665555
Q ss_pred HHHHHHHHHHHHc-------CCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHh-------------------
Q 006562 450 EAWKRRGQARAAL-------GESVEAIQDLSKALEFE--------PNSADILHERGIVNFK------------------- 495 (640)
Q Consensus 450 ~~~~~la~~~~~~-------~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~------------------- 495 (640)
.+...+|.++.+. |-...|...+++.++.. -++...|..+|....-
T Consensus 665 ~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~ 744 (1238)
T KOG1127|consen 665 TGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSK 744 (1238)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHH
Confidence 5666666665543 44555666666665431 1111122222211110
Q ss_pred ----cCCH------HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHccCcccHHHHHHH
Q 006562 496 ----FKDF------NAAVEDLSACVKLDKENKSAYTYLGLALSS--------IGEYKKAEEAHLKAIQLDRNFLEAWGHL 557 (640)
Q Consensus 496 ----~~~~------~~A~~~~~~al~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~~~~a~~~~~~~~~~~~~l 557 (640)
++.. --+.+++-..+++.. ++..|+++|.-|.. +.+...|+.++.++++...++...|..+
T Consensus 745 q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~-~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaL 823 (1238)
T KOG1127|consen 745 QLEKTGALKKNDLLFLGYECGIAHLSLAI-HMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNAL 823 (1238)
T ss_pred HHHhcccCcchhHHHHHHHHhhHHHHHhh-ccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 0000 112222222222211 24567777777665 2233578899999999999999999999
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCCccc
Q 006562 558 TQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYRE 637 (640)
Q Consensus 558 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 637 (640)
|.+ ...|++.-|...|-+.+...|.....|.++|.++....+++-|...|.++..++|.+...|...+.+....|+.-+
T Consensus 824 GVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~ 902 (1238)
T KOG1127|consen 824 GVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIE 902 (1238)
T ss_pred HHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHH
Confidence 988 5668899999999999999999999999999999999999999999999999999999999999888888886544
Q ss_pred c
Q 006562 638 A 638 (640)
Q Consensus 638 A 638 (640)
+
T Consensus 903 ~ 903 (1238)
T KOG1127|consen 903 R 903 (1238)
T ss_pred H
Confidence 3
No 73
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.76 E-value=6.3e-16 Score=155.12 Aligned_cols=243 Identities=18% Similarity=0.155 Sum_probs=205.6
Q ss_pred hhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 006562 371 TRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKE--------DPMYPEALIGRGTARAFQRELEAAISDFTEAI 442 (640)
Q Consensus 371 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 442 (640)
.......|.-......+|..|...|+|+.|+..++.+++. .|.-......+|.+|...+++.+|+..|++++
T Consensus 189 ~~~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL 268 (508)
T KOG1840|consen 189 KGLGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEAL 268 (508)
T ss_pred HhcccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3445567777778888999999999999999999999987 45545556669999999999999999999999
Q ss_pred HhC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHhcCCHHHHHHHH
Q 006562 443 QSN--------PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPN--------SADILHERGIVNFKFKDFNAAVEDL 506 (640)
Q Consensus 443 ~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~~~~~~A~~~~ 506 (640)
.+. |.-+.++..||.+|...|++++|..++++++++... -...+..++.++..++++++|..++
T Consensus 269 ~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~ 348 (508)
T KOG1840|consen 269 TIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLL 348 (508)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHH
Confidence 752 334568999999999999999999999999987422 2446788899999999999999999
Q ss_pred HHHHHhC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC--------cccHHHHHHHHHHHHHhcCHHHH
Q 006562 507 SACVKLD--------KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD--------RNFLEAWGHLTQFYQDLANSEKA 570 (640)
Q Consensus 507 ~~al~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--------~~~~~~~~~la~~~~~~g~~~~A 570 (640)
++++++. +.-+..+.++|.+|..+|++++|..++++++.+. +.....+..+|..|.+.+++.+|
T Consensus 349 q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a 428 (508)
T KOG1840|consen 349 QKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEA 428 (508)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchH
Confidence 9998763 2335788899999999999999999999999874 33366788999999999999999
Q ss_pred HHHHHHHHHhC-------CCChHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 006562 571 LECLQQVLYID-------KRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLG 613 (640)
Q Consensus 571 ~~~~~~al~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 613 (640)
...|.++..+. |+....+.+||.+|..+|++++|+++.++++.
T Consensus 429 ~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 429 EQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 99999887652 34456899999999999999999999999873
No 74
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=2.1e-17 Score=153.86 Aligned_cols=262 Identities=17% Similarity=0.194 Sum_probs=222.1
Q ss_pred hhHHHHHhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH-
Q 006562 364 RNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAI- 442 (640)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al- 442 (640)
.+.-..+..++...|.++..|...+..++..|+|++|.-..++.++++|..+......+.|+...++..+|.+.++..-
T Consensus 66 ~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~~~~~ 145 (486)
T KOG0550|consen 66 GNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKLKSKQA 145 (486)
T ss_pred HHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHhhhhhh
Confidence 4444557777888898899999999999999999999999999999999999999999999999999888888777322
Q ss_pred ----H-------hC------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006562 443 ----Q-------SN------PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505 (640)
Q Consensus 443 ----~-------~~------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~ 505 (640)
. +. |....+...-+.++...|++++|...--..+++++.+.++++..|.++...++.+.|+.+
T Consensus 146 ~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~h 225 (486)
T KOG0550|consen 146 YKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINH 225 (486)
T ss_pred hHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHH
Confidence 0 00 222345556788899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCcH------------HHHHHHHHHHHHcCCHHHHHHHHHHHHccCccc----HHHHHHHHHHHHHhcCHHH
Q 006562 506 LSACVKLDKENK------------SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF----LEAWGHLTQFYQDLANSEK 569 (640)
Q Consensus 506 ~~~al~~~~~~~------------~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~g~~~~ 569 (640)
+++++.++|+.. ..+...|.-.++.|++.+|.+.|..++.++|++ ...|.+++.+...+|+..+
T Consensus 226 f~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~e 305 (486)
T KOG0550|consen 226 FQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLRE 305 (486)
T ss_pred HhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchh
Confidence 999999998764 345667888899999999999999999999987 5567888999999999999
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHH
Q 006562 570 ALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRA 626 (640)
Q Consensus 570 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 626 (640)
|+..++.++.++|....++...|.++..+++|++|++.|+++++...+ .+....+.
T Consensus 306 aisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~ 361 (486)
T KOG0550|consen 306 AISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLR 361 (486)
T ss_pred hhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHH
Confidence 999999999999999999999999999999999999999999987665 43333333
No 75
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.75 E-value=1.6e-14 Score=142.36 Aligned_cols=386 Identities=15% Similarity=0.109 Sum_probs=279.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHcccCchhH-HHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHH
Q 006562 43 LAKLCSLRNWSKAIRILDSLLAQSYEIQD-ICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEE 121 (640)
Q Consensus 43 ~~~~~~~~~y~~Ai~~y~~ai~~~~~~~~-~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~~~~ 121 (640)
.-+.|..++|++.+...+..+...|.+.. ....|..+..+|+-++|...+..++..||.+.-.|.-+|.++....+|++
T Consensus 14 ~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~e 93 (700)
T KOG1156|consen 14 ALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDE 93 (700)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHH
Confidence 33568899999999999999997777654 77889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCChHHHHHHHhHHHHHHHHhhhccchhhhhhcccccccccccCCCCCCCcchhhhhcCCCCCccccc
Q 006562 122 ALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSS 201 (640)
Q Consensus 122 A~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (640)
|+++|+.|+.+.|+...-+..+.-|...+.+.
T Consensus 94 aiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~------------------------------------------------ 125 (700)
T KOG1156|consen 94 AIKCYRNALKIEKDNLQILRDLSLLQIQMRDY------------------------------------------------ 125 (700)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh------------------------------------------------
Confidence 99999999777776643332221111111100
Q ss_pred cCCccccccccCCCCCCCCcccccccccCCCcccccccccccCCccccccccCCCCCCCCccccccccchhhccccCCcc
Q 006562 202 SQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDF 281 (640)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (640)
T Consensus 126 -------------------------------------------------------------------------------- 125 (700)
T KOG1156|consen 126 -------------------------------------------------------------------------------- 125 (700)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCcccccccCCcccccccccccccccCccCCCCCCCCcccccccccCCCCCCchHHHHHhhHHHhhhhHHHHHH
Q 006562 282 DICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNE 361 (640)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 361 (640)
T Consensus 126 -------------------------------------------------------------------------------- 125 (700)
T KOG1156|consen 126 -------------------------------------------------------------------------------- 125 (700)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhHHHHHhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---CCC-----HHHHHHHHHHHHHccCHHH
Q 006562 362 AKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKED---PMY-----PEALIGRGTARAFQRELEA 433 (640)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~---~~~-----~~~~~~la~~~~~~g~~~~ 433 (640)
...........+..|..-..|+..|..+.-.|++..|..+.+...+.. |+. .........++...|.+++
T Consensus 126 --~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ 203 (700)
T KOG1156|consen 126 --EGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQK 203 (700)
T ss_pred --hhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHH
Confidence 000012223345678888899999999999999999999998887755 332 3456667777788888888
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHh
Q 006562 434 AISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAV-EDLSACVKL 512 (640)
Q Consensus 434 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~-~~~~~al~~ 512 (640)
|++.+..--..--+........|.++..++++++|...+...+..+|++...+..+-.++....+.-+++ ..|...-+.
T Consensus 204 ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~ 283 (700)
T KOG1156|consen 204 ALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK 283 (700)
T ss_pred HHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc
Confidence 8887766443333334455668999999999999999999999999999888888777776334444454 555555444
Q ss_pred CCCcHH-------------HHHHHHHHH---H-------------HcCCHHHHHHHHHHHHc-------cC---------
Q 006562 513 DKENKS-------------AYTYLGLAL---S-------------SIGEYKKAEEAHLKAIQ-------LD--------- 547 (640)
Q Consensus 513 ~~~~~~-------------~~~~la~~~---~-------------~~g~~~~A~~~~~~a~~-------~~--------- 547 (640)
.|.... ....+..++ . -..+..+ ...+++.+. -.
T Consensus 284 y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k-~~~le~Lvt~y~~~L~~~~~f~~~D~~ 362 (700)
T KOG1156|consen 284 YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEK-VAFLEKLVTSYQHSLSGTGMFNFLDDG 362 (700)
T ss_pred CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhH-hHHHHHHHHHHHhhcccccCCCccccc
Confidence 433210 000000000 0 0111111 112222221 11
Q ss_pred ---ccc--HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHH
Q 006562 548 ---RNF--LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECL 622 (640)
Q Consensus 548 ---~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 622 (640)
|-. ...++.++.-+...|+++.|..+++.++...|..++.+...|.++...|++++|..++..+.+++-.|.-+-
T Consensus 363 ~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~IN 442 (700)
T KOG1156|consen 363 KQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAIN 442 (700)
T ss_pred ccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHH
Confidence 222 234467888899999999999999999999999999999999999999999999999999999987776666
Q ss_pred HHHHHHHHHcCCccccc
Q 006562 623 YLRASCYHAIGEYREAV 639 (640)
Q Consensus 623 ~~la~~~~~~g~~~~Al 639 (640)
-.-|....+.++.++|.
T Consensus 443 sKcAKYmLrAn~i~eA~ 459 (700)
T KOG1156|consen 443 SKCAKYMLRANEIEEAE 459 (700)
T ss_pred HHHHHHHHHccccHHHH
Confidence 56777777777777764
No 76
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.73 E-value=1.1e-14 Score=131.71 Aligned_cols=247 Identities=20% Similarity=0.186 Sum_probs=219.3
Q ss_pred HhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 006562 370 VTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY-----PEALIGRGTARAFQRELEAAISDFTEAIQS 444 (640)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 444 (640)
+-.+...+|...+.++.+|..+.+.|..+.|+.+-+..+. .|+. ..+...+|.-|+..|-++.|...|....+.
T Consensus 58 F~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de 136 (389)
T COG2956 58 FLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDE 136 (389)
T ss_pred HHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcc
Confidence 3444567888999999999999999999999999987776 4443 467889999999999999999999999876
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHH
Q 006562 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS-----ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSA 519 (640)
Q Consensus 445 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 519 (640)
...-..+...+..+|....+|++|++..++..++.+.. ...+..++..+....+.+.|+..+.++++.+|++..+
T Consensus 137 ~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRA 216 (389)
T COG2956 137 GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRA 216 (389)
T ss_pred hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceeh
Confidence 65667789999999999999999999999999998876 3467788888888999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHccCccc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhc
Q 006562 520 YTYLGLALSSIGEYKKAEEAHLKAIQLDRNF-LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGL 598 (640)
Q Consensus 520 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 598 (640)
-..+|.++...|+|+.|++.++.+++.+|.. +.+...+..+|...|+.++.+..+.++.+..+. +.+-..++..-...
T Consensus 217 si~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g-~~~~l~l~~lie~~ 295 (389)
T COG2956 217 SIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG-ADAELMLADLIELQ 295 (389)
T ss_pred hhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC-ccHHHHHHHHHHHh
Confidence 9999999999999999999999999999987 778889999999999999999999999988875 45566677777777
Q ss_pred CCHHHHHHHHHHhhccCCCC
Q 006562 599 GQHKKAIKDLSSGLGIDPSN 618 (640)
Q Consensus 599 g~~~~A~~~~~~al~~~p~~ 618 (640)
.-.+.|..++.+-+...|+-
T Consensus 296 ~G~~~Aq~~l~~Ql~r~Pt~ 315 (389)
T COG2956 296 EGIDAAQAYLTRQLRRKPTM 315 (389)
T ss_pred hChHHHHHHHHHHHhhCCcH
Confidence 77889999999999999973
No 77
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.73 E-value=1.2e-14 Score=159.22 Aligned_cols=391 Identities=10% Similarity=-0.023 Sum_probs=288.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHcccCchhHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCC-chHHHHHHHHHHHHcC
Q 006562 39 ARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPT-LLQAYILKGCAFSALG 117 (640)
Q Consensus 39 ~~~~~~~~~~~~~y~~Ai~~y~~ai~~~~~~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~-~~~a~~~~g~~y~~~g 117 (640)
.-.-+.-|.+.|++++|...|++..+ |+...|.....+|.+.|++++|+..+++.++..+. +...+..+-.++...|
T Consensus 161 ~n~Li~~y~k~g~~~~A~~lf~~m~~--~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~ 238 (697)
T PLN03081 161 MNRVLLMHVKCGMLIDARRLFDEMPE--RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG 238 (697)
T ss_pred HHHHHHHHhcCCCHHHHHHHHhcCCC--CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCC
Confidence 33445677899999999999998854 67777999999999999999999999999876532 3457777777888899
Q ss_pred CHHHHHHHHHHHHhhccCC-hHHHHHHHhHHHHHHHHhhhccchhhhhhcccccccccccCCCCCCCcchhhhhcCCCCC
Q 006562 118 RKEEALSVWEKGYEHALHQ-SADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSD 196 (640)
Q Consensus 118 ~~~~A~~~~~~al~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (640)
..+.+...+..+++..... ......++...-.......+. ..+.
T Consensus 239 ~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~---~vf~-------------------------------- 283 (697)
T PLN03081 239 SARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDAR---CVFD-------------------------------- 283 (697)
T ss_pred cHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHH---HHHH--------------------------------
Confidence 9999988888776554221 111222222222111111111 0000
Q ss_pred ccccccCCccccccccCCCCCCCCcccccccccCCCcccccccccccCCccccccccCCCCCCCCccccccccchhhccc
Q 006562 197 ICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQ 276 (640)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (640)
.. .. +......
T Consensus 284 ----------------~m-----------~~-~~~vt~n----------------------------------------- 294 (697)
T PLN03081 284 ----------------GM-----------PE-KTTVAWN----------------------------------------- 294 (697)
T ss_pred ----------------hC-----------CC-CChhHHH-----------------------------------------
Confidence 00 00 0000000
Q ss_pred cCCcccccCCCCCcccccccCCcccccccccccccccCccCCCCCCCCcccccccccCCCCCCchHHHHHhhHHHhhhhH
Q 006562 277 SSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLK 356 (640)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 356 (640)
.....+...|+.++|...+.++..
T Consensus 295 --------------------------------------------------~li~~y~~~g~~~eA~~lf~~M~~------ 318 (697)
T PLN03081 295 --------------------------------------------------SMLAGYALHGYSEEALCLYYEMRD------ 318 (697)
T ss_pred --------------------------------------------------HHHHHHHhCCCHHHHHHHHHHHHH------
Confidence 001111233445555554443321
Q ss_pred HHHHHHHhhHHHHHhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCHHHHH
Q 006562 357 ETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKED-PMYPEALIGRGTARAFQRELEAAI 435 (640)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~ 435 (640)
..-..+...+..+...+...|++++|.+++..+++.. +.+..++..+...|.+.|++++|.
T Consensus 319 ------------------~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~ 380 (697)
T PLN03081 319 ------------------SGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDAR 380 (697)
T ss_pred ------------------cCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHH
Confidence 1122345567778889999999999999999999875 556788899999999999999999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 006562 436 SDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEP-NSADILHERGIVNFKFKDFNAAVEDLSACVKLDK 514 (640)
Q Consensus 436 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 514 (640)
..|++..+ .+...|..+...|...|+.++|++.|++...... .+...+..+...+...|..++|..+|+...+..+
T Consensus 381 ~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g 457 (697)
T PLN03081 381 NVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHR 457 (697)
T ss_pred HHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcC
Confidence 99998754 3567899999999999999999999999887532 2456788888899999999999999999986532
Q ss_pred --CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 006562 515 --ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRG 592 (640)
Q Consensus 515 --~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la 592 (640)
.+...|..+...+.+.|++++|.+.+++. ...| +...|..+...+...|+.+.|...+++.+...|++...|..++
T Consensus 458 ~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~ 535 (697)
T PLN03081 458 IKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLL 535 (697)
T ss_pred CCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHH
Confidence 24467888999999999999999999875 2334 4667999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHhhcc
Q 006562 593 LLLHGLGQHKKAIKDLSSGLGI 614 (640)
Q Consensus 593 ~~~~~~g~~~~A~~~~~~al~~ 614 (640)
.+|...|++++|.+.++...+.
T Consensus 536 ~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 536 NLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHHHhCCCHHHHHHHHHHHHHc
Confidence 9999999999999999987643
No 78
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.73 E-value=6.8e-16 Score=154.86 Aligned_cols=230 Identities=21% Similarity=0.227 Sum_probs=195.0
Q ss_pred hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Q 006562 410 EDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS--------NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFE-- 479 (640)
Q Consensus 410 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-- 479 (640)
.+|.-..+...++..|...|+|++|+..++.+++. .|.-......+|.+|..++++.+|+..|++++.+.
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 35666777888999999999999999999999988 45445566679999999999999999999999862
Q ss_pred ---CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 006562 480 ---PN---SADILHERGIVNFKFKDFNAAVEDLSACVKLD--------KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ 545 (640)
Q Consensus 480 ---p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 545 (640)
+. ...++.++|.+|...|++++|..++++++++. |.-...+..++.++..++++++|..++++++.
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~ 353 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK 353 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 33 35578999999999999999999999998863 22346678889999999999999999999987
Q ss_pred cC--------cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHhcCCHHHHHHHHH
Q 006562 546 LD--------RNFLEAWGHLTQFYQDLANSEKALECLQQVLYID--------KRFSKAYHLRGLLLHGLGQHKKAIKDLS 609 (640)
Q Consensus 546 ~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~ 609 (640)
+. +..+..+.++|.+|..+|++++|.+++++++... +.....+..+|..+.+.+++.+|...|.
T Consensus 354 i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~ 433 (508)
T KOG1840|consen 354 IYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFE 433 (508)
T ss_pred HHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHH
Confidence 63 2346788999999999999999999999999764 2335678899999999999999999998
Q ss_pred Hhhcc-------CCCCHHHHHHHHHHHHHcCCccccc
Q 006562 610 SGLGI-------DPSNIECLYLRASCYHAIGEYREAV 639 (640)
Q Consensus 610 ~al~~-------~p~~~~~~~~la~~~~~~g~~~~Al 639 (640)
++..+ .|+-...+.+|+.+|..+|+++.|+
T Consensus 434 ~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~ 470 (508)
T KOG1840|consen 434 EAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAE 470 (508)
T ss_pred HHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHH
Confidence 88754 3444578899999999999999986
No 79
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=4.9e-13 Score=127.03 Aligned_cols=451 Identities=14% Similarity=0.098 Sum_probs=322.0
Q ss_pred HhcCCHHHHHHHHHHHHccc-CchhHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 006562 47 CSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSV 125 (640)
Q Consensus 47 ~~~~~y~~Ai~~y~~ai~~~-~~~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~~~~A~~~ 125 (640)
-.++++++|.+.|++||..+ .+...+..-|.+-++.++-..|....++|+.+-|.--+.|+..-..=..+|+..-|.+.
T Consensus 84 esq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHH
Confidence 47899999999999999999 88899999999999999999999999999999999999999999889999999999999
Q ss_pred HHHHHhhccCChHHHHHHHhHHHHHHHHhhhccc-----h-----------hhhhhcccccc--cccccCCCCCCCcchh
Q 006562 126 WEKGYEHALHQSADLKQFLELEELLTAAKQDRSV-----T-----------CEYDVSNSMSS--LTVSESGLNANDKMSE 187 (640)
Q Consensus 126 ~~~al~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-----~-----------~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 187 (640)
|++-++..|++..=... +...........+.+. . ..+........ -.....+....+....
T Consensus 164 ferW~~w~P~eqaW~sf-I~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~ 242 (677)
T KOG1915|consen 164 FERWMEWEPDEQAWLSF-IKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEE 242 (677)
T ss_pred HHHHHcCCCcHHHHHHH-HHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHH
Confidence 99999999987542211 1111111100000000 0 00110000000 0000000000000000
Q ss_pred hhhcCCCCCccccccCCccccccccCCCCCCCCcccccccccCCCcccccccccccCCccccccccCCCCCCCCcccccc
Q 006562 188 TSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHAS 267 (640)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (640)
. ..+..++.
T Consensus 243 ~----------------------------------------------e~lfvaFA------------------------- 251 (677)
T KOG1915|consen 243 A----------------------------------------------EILFVAFA------------------------- 251 (677)
T ss_pred H----------------------------------------------HHHHHHHH-------------------------
Confidence 0 00000000
Q ss_pred ccchhhccccCCcccccCCCCCcccccccCCcccccccccccccccCccCCCCCCCCcccccccccCCCCCCchHHHHHh
Q 006562 268 RDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSK 347 (640)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 347 (640)
.-+. ...+.+++..+ -++....+..++..+...-+..
T Consensus 252 --~fEe----------------~qkE~ERar~i-------------------------ykyAld~~pk~raeeL~k~~~~ 288 (677)
T KOG1915|consen 252 --EFEE----------------RQKEYERARFI-------------------------YKYALDHIPKGRAEELYKKYTA 288 (677)
T ss_pred --HHHH----------------HHHHHHHHHHH-------------------------HHHHHHhcCcccHHHHHHHHHH
Confidence 0000 00000000000 0112223334445566667777
Q ss_pred hHHHhhhhHHHHHHHHhhHHHHHhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHH-------HHHH
Q 006562 348 LSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPE-------ALIG 420 (640)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~-------~~~~ 420 (640)
.++++|..........+..++.++..+..+|.+.+.|+..-..--..|+.+.-.+.|++++..-|.... +++.
T Consensus 289 fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLW 368 (677)
T KOG1915|consen 289 FEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLW 368 (677)
T ss_pred HHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHH
Confidence 788888877777767778888899999999999999999999888999999999999999987776432 2222
Q ss_pred HHHHH---HHccCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006562 421 RGTAR---AFQRELEAAISDFTEAIQSNPSA----GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVN 493 (640)
Q Consensus 421 la~~~---~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 493 (640)
+-.++ ....+.+.+...|+.++++-|.. +.+|...|.....+.+...|.+.+-.++...|.+ ........+-
T Consensus 369 inYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelE 447 (677)
T KOG1915|consen 369 INYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-KLFKGYIELE 447 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-hHHHHHHHHH
Confidence 22222 34578999999999999999863 6788889999999999999999999999999976 4566667788
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccc-H-HHHHHHHHHHHHhcCHHHHH
Q 006562 494 FKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF-L-EAWGHLTQFYQDLANSEKAL 571 (640)
Q Consensus 494 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-~-~~~~~la~~~~~~g~~~~A~ 571 (640)
.++++++.+...|++-++..|.+..+|...|..-..+|+.+.|...|+-|+....-+ | ..|-.....-...|.++.|.
T Consensus 448 lqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR 527 (677)
T KOG1915|consen 448 LQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKAR 527 (677)
T ss_pred HHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHH
Confidence 899999999999999999999999999999999999999999999999998865433 2 34445556667889999999
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHH-----hcC-----------CHHHHHHHHHHhhcc
Q 006562 572 ECLQQVLYIDKRFSKAYHLRGLLLH-----GLG-----------QHKKAIKDLSSGLGI 614 (640)
Q Consensus 572 ~~~~~al~~~~~~~~~~~~la~~~~-----~~g-----------~~~~A~~~~~~al~~ 614 (640)
.+|++.++..+... +|...|..-. +.+ +...|...|++|...
T Consensus 528 ~LYerlL~rt~h~k-vWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~ 585 (677)
T KOG1915|consen 528 ALYERLLDRTQHVK-VWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTY 585 (677)
T ss_pred HHHHHHHHhcccch-HHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHH
Confidence 99999999887654 7777777655 445 677888899888754
No 80
>PLN03077 Protein ECB2; Provisional
Probab=99.71 E-value=5.7e-14 Score=157.84 Aligned_cols=250 Identities=11% Similarity=-0.038 Sum_probs=196.8
Q ss_pred ccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 006562 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQA 458 (640)
Q Consensus 379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 458 (640)
.+...+..+...|.+.|++++|.++|++..+ .+...|..+...|...|++++|+..|++.....+.+...+..+-..
T Consensus 422 ~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a 498 (857)
T PLN03077 422 SYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSA 498 (857)
T ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHH
Confidence 4456667777888888888888888887643 3456777888888888888888888888876555556666667777
Q ss_pred HHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Q 006562 459 RAALGESVEAIQDLSKALEFEP-NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAE 537 (640)
Q Consensus 459 ~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~ 537 (640)
+...|..+.+.+.+..+++..- .+......+...|.+.|++++|...|+.. +.+...|..+...|...|+.++|+
T Consensus 499 ~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~ 574 (857)
T PLN03077 499 CARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAV 574 (857)
T ss_pred HhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHH
Confidence 7888888888888888877542 23456667888999999999999999886 567889999999999999999999
Q ss_pred HHHHHHHcc--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 006562 538 EAHLKAIQL--DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK--RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLG 613 (640)
Q Consensus 538 ~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 613 (640)
..|++.... .|+ ...+..+...+...|..++|..+|+...+..+ .+...|..+..++.+.|++++|.+.+++. .
T Consensus 575 ~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~ 652 (857)
T PLN03077 575 ELFNRMVESGVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-P 652 (857)
T ss_pred HHHHHHHHcCCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-C
Confidence 999998864 454 45566666778899999999999999885433 34578899999999999999999999986 3
Q ss_pred cCCCCHHHHHHHHHHHHHcCCcccc
Q 006562 614 IDPSNIECLYLRASCYHAIGEYREA 638 (640)
Q Consensus 614 ~~p~~~~~~~~la~~~~~~g~~~~A 638 (640)
..|+ ..+|..+...+...|+.+.|
T Consensus 653 ~~pd-~~~~~aLl~ac~~~~~~e~~ 676 (857)
T PLN03077 653 ITPD-PAVWGALLNACRIHRHVELG 676 (857)
T ss_pred CCCC-HHHHHHHHHHHHHcCChHHH
Confidence 5665 67787777788777776643
No 81
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.68 E-value=1.4e-14 Score=142.81 Aligned_cols=250 Identities=20% Similarity=0.197 Sum_probs=219.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 006562 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (640)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 460 (640)
-..++..+.-.+..++|...++..+.+++..|.+++.+...|..+..+|+-++|..+...++..++.+...|..+|.++.
T Consensus 7 E~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 7 ENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHh
Confidence 34567778888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 006562 461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAH 540 (640)
Q Consensus 461 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 540 (640)
...+|++|+++|+.|+.+.|++..++..++.+..++++++.....-.+.++..|..-..|...+..+...|++..|...+
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il 166 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEIL 166 (700)
T ss_pred hhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHccC---ccc-----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 006562 541 LKAIQLD---RNF-----LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGL 612 (640)
Q Consensus 541 ~~a~~~~---~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 612 (640)
+...... |+. .........+....|.+++|++.+..--..--+........|.++.+++++++|...|...+
T Consensus 167 ~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll 246 (700)
T KOG1156|consen 167 EEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLL 246 (700)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHH
Confidence 8776654 322 34455667777888888888887766543333445566778999999999999999999999
Q ss_pred ccCCCCHHHHHHHHHHHH
Q 006562 613 GIDPSNIECLYLRASCYH 630 (640)
Q Consensus 613 ~~~p~~~~~~~~la~~~~ 630 (640)
..+|++...+..+-.++.
T Consensus 247 ~rnPdn~~Yy~~l~~~lg 264 (700)
T KOG1156|consen 247 ERNPDNLDYYEGLEKALG 264 (700)
T ss_pred hhCchhHHHHHHHHHHHH
Confidence 999999988877766664
No 82
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=2.1e-12 Score=126.34 Aligned_cols=253 Identities=14% Similarity=0.126 Sum_probs=167.5
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--------CC-------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 006562 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKED--------PM-------YPEALIGRGTARAFQRELEAAISDFTEAIQS 444 (640)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--------~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 444 (640)
+.+.+|+.|..+...|+|.+|++.+++++++. .+ -..+...++.++..+|+.++|...|...++.
T Consensus 174 syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~ 253 (652)
T KOG2376|consen 174 SYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKR 253 (652)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh
Confidence 46677888888888888888888888884321 11 1245677888888888888888888888877
Q ss_pred CCCcHHH-------------------------------------------------HHHHHHHHHHcCCHHHHHHHHHHH
Q 006562 445 NPSAGEA-------------------------------------------------WKRRGQARAALGESVEAIQDLSKA 475 (640)
Q Consensus 445 ~p~~~~~-------------------------------------------------~~~la~~~~~~~~~~~A~~~~~~a 475 (640)
+|.+... +.+.+.+.+..+.-+.+.+...+.
T Consensus 254 ~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~l 333 (652)
T KOG2376|consen 254 NPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASL 333 (652)
T ss_pred cCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhC
Confidence 7655321 111122222222222222222222
Q ss_pred HHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcc-------C
Q 006562 476 LEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN-KSAYTYLGLALSSIGEYKKAEEAHLKAIQL-------D 547 (640)
Q Consensus 476 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-------~ 547 (640)
-...|....-.........+...+.+|..++......+|.+ ..+.+.++.+.+..|+++.|+..+...... .
T Consensus 334 p~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~ 413 (652)
T KOG2376|consen 334 PGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEA 413 (652)
T ss_pred CccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhh
Confidence 22222222222222333333346888899999988888887 677888899999999999999999833311 1
Q ss_pred cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------CCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHH
Q 006562 548 RNFLEAWGHLTQFYQDLANSEKALECLQQVLYID-------KRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE 620 (640)
Q Consensus 548 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 620 (640)
...|.+-..+-.++...++.+.|...+..++... +.....+...+.+..+.|+-++|...+++.++.+|++.+
T Consensus 414 ~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~ 493 (652)
T KOG2376|consen 414 KHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTD 493 (652)
T ss_pred ccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHH
Confidence 2234555555666777777777777777776542 222345667788888889999999999999999999999
Q ss_pred HHHHHHHHHHHc
Q 006562 621 CLYLRASCYHAI 632 (640)
Q Consensus 621 ~~~~la~~~~~~ 632 (640)
++..+...|...
T Consensus 494 ~l~~lV~a~~~~ 505 (652)
T KOG2376|consen 494 LLVQLVTAYARL 505 (652)
T ss_pred HHHHHHHHHHhc
Confidence 998888877654
No 83
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.66 E-value=1.4e-14 Score=136.58 Aligned_cols=190 Identities=16% Similarity=0.162 Sum_probs=157.9
Q ss_pred cCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHH--
Q 006562 376 SKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP---EALIGRGTARAFQRELEAAISDFTEAIQSNPSAGE-- 450 (640)
Q Consensus 376 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-- 450 (640)
.++..+..++.+|..++..|++++|+..|++++..+|+++ .+++.+|.++...|++++|+..++++++..|+++.
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 4566788999999999999999999999999999999876 57899999999999999999999999999998765
Q ss_pred -HHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 006562 451 -AWKRRGQARAAL--------GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYT 521 (640)
Q Consensus 451 -~~~~la~~~~~~--------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 521 (640)
+++.+|.++... |++++|+..+++++..+|++...+..+..+....+ . ......
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~----~-------------~~~~~~ 170 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRN----R-------------LAGKEL 170 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH----H-------------HHHHHH
Confidence 788999999876 78999999999999999998665433322211110 0 112345
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHccCccc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Q 006562 522 YLGLALSSIGEYKKAEEAHLKAIQLDRNF---LEAWGHLTQFYQDLANSEKALECLQQVLYIDK 582 (640)
Q Consensus 522 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 582 (640)
.+|.++...|++.+|+..+++++...|+. +.+++.+|.++...|++++|..+++......|
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 78889999999999999999999887654 68999999999999999999998888766554
No 84
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.66 E-value=3.3e-14 Score=134.14 Aligned_cols=189 Identities=16% Similarity=0.059 Sum_probs=159.1
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---
Q 006562 411 DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG---EAWKRRGQARAALGESVEAIQDLSKALEFEPNSAD--- 484 (640)
Q Consensus 411 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~--- 484 (640)
++..+..++.+|..+...|++++|+..+++++...|.++ .+++.+|.++...|++++|+..++++++..|+++.
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 455688999999999999999999999999999999875 57899999999999999999999999999998765
Q ss_pred HHHHHHHHHHhc--------CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHH
Q 006562 485 ILHERGIVNFKF--------KDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGH 556 (640)
Q Consensus 485 ~~~~la~~~~~~--------~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 556 (640)
+++.+|.++... |++++|+..+++++..+|++...+..+..+....+ . .......
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~----~-------------~~~~~~~ 171 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRN----R-------------LAGKELY 171 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH----H-------------HHHHHHH
Confidence 688899999876 78999999999999999998766543332221110 0 1223457
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHhhccCC
Q 006562 557 LTQFYQDLANSEKALECLQQVLYIDKRF---SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP 616 (640)
Q Consensus 557 la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 616 (640)
+|.++...|++.+|+..+++++...|+. +.+++.+|.++...|++++|..+++......|
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 8899999999999999999999997754 57999999999999999999999988776655
No 85
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.65 E-value=1.3e-13 Score=139.28 Aligned_cols=262 Identities=15% Similarity=0.065 Sum_probs=184.3
Q ss_pred CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH----HhCCCcHHHH
Q 006562 377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAI----QSNPSAGEAW 452 (640)
Q Consensus 377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al----~~~p~~~~~~ 452 (640)
+....+..+..|..++..|++++|...++++++.+|++..++.. +..+...|++..+.....+++ ...|....++
T Consensus 39 ~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 117 (355)
T cd05804 39 RATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLL 117 (355)
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHH
Confidence 34456677788888999999999999999999999998877665 555555555444444444444 4556666777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHH
Q 006562 453 KRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK----SAYTYLGLALS 528 (640)
Q Consensus 453 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~la~~~~ 528 (640)
..+|.++...|++++|+..++++++..|+++.++..+|.++...|++++|+.++++++...|.++ ..+..+|.++.
T Consensus 118 ~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 118 GMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence 78888999999999999999999999999988889999999999999999999999998876433 34567899999
Q ss_pred HcCCHHHHHHHHHHHHccCcc--cHHHHH---HHHHHHHHhcCHHHHHHH--H-HHHHHhCCC--ChHHHHHHHHHHHhc
Q 006562 529 SIGEYKKAEEAHLKAIQLDRN--FLEAWG---HLTQFYQDLANSEKALEC--L-QQVLYIDKR--FSKAYHLRGLLLHGL 598 (640)
Q Consensus 529 ~~g~~~~A~~~~~~a~~~~~~--~~~~~~---~la~~~~~~g~~~~A~~~--~-~~al~~~~~--~~~~~~~la~~~~~~ 598 (640)
..|++++|+..+++++...|. ...... .+...+...|....+... + .......+. ........+.++...
T Consensus 198 ~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 277 (355)
T cd05804 198 ERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGA 277 (355)
T ss_pred HCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcC
Confidence 999999999999998766552 221111 122222333432222222 1 111111111 223334678888899
Q ss_pred CCHHHHHHHHHHhhccCCC---------CHHHHHHHHHHHHHcCCccccc
Q 006562 599 GQHKKAIKDLSSGLGIDPS---------NIECLYLRASCYHAIGEYREAV 639 (640)
Q Consensus 599 g~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~Al 639 (640)
|+.++|...++........ ........+.++...|++++|+
T Consensus 278 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~ 327 (355)
T cd05804 278 GDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATAL 327 (355)
T ss_pred CCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHH
Confidence 9999999999887653221 2456677889999999998885
No 86
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.62 E-value=1.4e-14 Score=123.54 Aligned_cols=126 Identities=15% Similarity=0.136 Sum_probs=91.3
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Q 006562 504 EDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKR 583 (640)
Q Consensus 504 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 583 (640)
..++++++.+|++ +..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++..+|+
T Consensus 14 ~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~ 90 (144)
T PRK15359 14 DILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS 90 (144)
T ss_pred HHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 4566677766653 4456777777777777777777777777777777777777777777777777777777777777
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHc
Q 006562 584 FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAI 632 (640)
Q Consensus 584 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 632 (640)
++.+++.+|.++...|++++|+..|++++...|+++..+..++.+...+
T Consensus 91 ~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 91 HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 7777777777777777777777777777777777777777776665543
No 87
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.60 E-value=3.2e-13 Score=136.34 Aligned_cols=205 Identities=14% Similarity=0.043 Sum_probs=131.7
Q ss_pred CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHH
Q 006562 377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWK 453 (640)
Q Consensus 377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 453 (640)
+|..+..+..+|..+...|+.+.+...+.++.+..|.+ .+..+..+.++...|++++|...++++++.+|.+..++.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 81 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK 81 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 56666677777777777777777777776666655533 445666677777777777777777777777777765555
Q ss_pred HHHHHHHHcCCH----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 006562 454 RRGQARAALGES----VEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS 529 (640)
Q Consensus 454 ~la~~~~~~~~~----~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 529 (640)
. +..+...|++ ..+...+.......|.....+..+|.++...|++++|...++++++..|+++.++..+|.++..
T Consensus 82 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~ 160 (355)
T cd05804 82 L-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEM 160 (355)
T ss_pred H-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 4 4444444333 3333333332234455555666667777777777777777777777777777777777777777
Q ss_pred cCCHHHHHHHHHHHHccCcccH----HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Q 006562 530 IGEYKKAEEAHLKAIQLDRNFL----EAWGHLTQFYQDLANSEKALECLQQVLYIDK 582 (640)
Q Consensus 530 ~g~~~~A~~~~~~a~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 582 (640)
.|++++|+.++.+++...|..+ ..+..+|.++...|++++|+..+++++...|
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 7777777777777776655322 2345667777777777777777777655444
No 88
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.60 E-value=3.3e-14 Score=121.25 Aligned_cols=124 Identities=19% Similarity=0.175 Sum_probs=72.2
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 006562 402 SIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPN 481 (640)
Q Consensus 402 ~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 481 (640)
.+|+++++.+|++ ++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++.++|.
T Consensus 14 ~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~ 90 (144)
T PRK15359 14 DILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS 90 (144)
T ss_pred HHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 3455555555543 3345555566666666666666666666666666666666666666666666666666666666
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 006562 482 SADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALS 528 (640)
Q Consensus 482 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 528 (640)
++.+++.+|.++...|++++|+..|++++...|+++..+..++.+..
T Consensus 91 ~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 91 HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 66666666666666666666666666666666665555555555443
No 89
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.60 E-value=1.4e-14 Score=121.68 Aligned_cols=117 Identities=22% Similarity=0.238 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHcccCch------hHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHH
Q 006562 36 AITARIELAKLCSLRNWSKAIRILDSLLAQSYEI------QDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILK 109 (640)
Q Consensus 36 ~~~~~~~~~~~~~~~~y~~Ai~~y~~ai~~~~~~------~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~ 109 (640)
+.+.+..+..+|.+|+|.+|..-|+.||++.|.. .+|.|||.|+++++.++.||.+|.+||+++|++.+|..++
T Consensus 95 ad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RR 174 (271)
T KOG4234|consen 95 ADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERR 174 (271)
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHH
Confidence 3455577889999999999999999999998432 3388999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhccCChHHHHHHHhHHHHHHH
Q 006562 110 GCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTA 152 (640)
Q Consensus 110 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~~ 152 (640)
+.+|.++.+|++|+..|++.+++.|..-.....+.+|.|....
T Consensus 175 Aeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~e 217 (271)
T KOG4234|consen 175 AEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINE 217 (271)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHH
Confidence 9999999999999999999999999998888888888776443
No 90
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.59 E-value=8.4e-13 Score=115.80 Aligned_cols=204 Identities=14% Similarity=0.030 Sum_probs=146.8
Q ss_pred cCChHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Q 006562 394 EGKYASAISIFDQILKE------DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVE 467 (640)
Q Consensus 394 ~g~~~~A~~~~~~~l~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~ 467 (640)
..+.++-++++...+.. .++....+-....+....|+.+-|..++++.....|.+..+....|..+...|++++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhh
Confidence 34556666666665543 233334455556666677777778788777777777777777777777777788888
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 006562 468 AIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD 547 (640)
Q Consensus 468 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 547 (640)
|+++|+..++-+|.+..++...-.+...+|+..+|++.+...++..+.+.++|..++.+|+..|+|++|.-++++.+-+.
T Consensus 105 A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~ 184 (289)
T KOG3060|consen 105 AIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ 184 (289)
T ss_pred HHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC
Confidence 88888888877777777777777777777777778887777777777788888888888888888888888888877777
Q ss_pred cccHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh
Q 006562 548 RNFLEAWGHLTQFYQDLA---NSEKALECLQQVLYIDKRFSKAYHLRGLLLHG 597 (640)
Q Consensus 548 ~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 597 (640)
|.++..+..+|.+++-+| +..-|.++|.++++++|.+..+++.+-.+...
T Consensus 185 P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~ 237 (289)
T KOG3060|consen 185 PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSA 237 (289)
T ss_pred CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHH
Confidence 777777777777776655 45667777777777777666666655544433
No 91
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.58 E-value=8.1e-11 Score=120.28 Aligned_cols=133 Identities=15% Similarity=0.062 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 006562 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (640)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 460 (640)
...++.+|..|-..|++++|+.++++++...|+.++.++..|.++...|++.+|...++.+..+++.+-.+....+..+.
T Consensus 194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~L 273 (517)
T PF12569_consen 194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHH
Confidence 35668889999999999999999999999999999999999999999999999999999999999999888888999999
Q ss_pred HcCCHHHHHHHHHHHHHhCC--CC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 006562 461 ALGESVEAIQDLSKALEFEP--NS-------ADILHERGIVNFKFKDFNAAVEDLSACVKLD 513 (640)
Q Consensus 461 ~~~~~~~A~~~~~~al~~~p--~~-------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 513 (640)
+.|+.++|...+....+.+. .. .......|.+|.+.|++..|++.|..+.+..
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f 335 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHF 335 (517)
T ss_pred HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 99999999999988766542 11 1233456899999999999999999887763
No 92
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.56 E-value=7.5e-13 Score=117.55 Aligned_cols=176 Identities=17% Similarity=0.153 Sum_probs=134.7
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006562 400 AISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFE 479 (640)
Q Consensus 400 A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 479 (640)
+...+-+....+|.+..+ ..++..+...|+-+.+..+..++...+|.+..+...+|......|++..|+..++++....
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~ 130 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA 130 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence 555555566667777777 7777777777777777777777777777777777777777777788888888888888777
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHH
Q 006562 480 PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ 559 (640)
Q Consensus 480 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~ 559 (640)
|+++.+|..+|.+|.+.|+++.|...|.+++++.|+++.+..++|..+.-.|+++.|..++..+....+.+..+..+++.
T Consensus 131 p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl 210 (257)
T COG5010 131 PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLAL 210 (257)
T ss_pred CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 77777777788888888888888888888888777777777778877777788877777777777777767777777777
Q ss_pred HHHHhcCHHHHHHHHHH
Q 006562 560 FYQDLANSEKALECLQQ 576 (640)
Q Consensus 560 ~~~~~g~~~~A~~~~~~ 576 (640)
+...+|+++.|..+..+
T Consensus 211 ~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 211 VVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHhhcCChHHHHhhccc
Confidence 77777777777665544
No 93
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.56 E-value=1.9e-12 Score=137.84 Aligned_cols=210 Identities=17% Similarity=0.083 Sum_probs=169.0
Q ss_pred HhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH
Q 006562 370 VTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG 449 (640)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 449 (640)
-..+..-+|.+..++..++..+...+++++|+..++.+++..|+....++.+|.++.+.+++..+... .++...+.+.
T Consensus 20 r~~~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~ 97 (906)
T PRK14720 20 RADANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNL 97 (906)
T ss_pred hcccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccccc
Confidence 33445678899999999999999999999999999999999999999999999999999987776665 5555554444
Q ss_pred -------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006562 450 -------------------EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACV 510 (640)
Q Consensus 450 -------------------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 510 (640)
.+++.+|.||..+|++++|...++++++.+|+++.++..+|..|... +.++|+.++.+++
T Consensus 98 ~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV 176 (906)
T PRK14720 98 KWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAI 176 (906)
T ss_pred chhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHH
Confidence 78888888888888888888888888888888888888888888888 8888888888887
Q ss_pred HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHH--------------------HHHHHHHHHhcCHHHH
Q 006562 511 KLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAW--------------------GHLTQFYQDLANSEKA 570 (640)
Q Consensus 511 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~--------------------~~la~~~~~~g~~~~A 570 (640)
.. +...+++..+..++.+.+..+|.+...+ .-+-..|...++|+++
T Consensus 177 ~~--------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~ 242 (906)
T PRK14720 177 YR--------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEV 242 (906)
T ss_pred HH--------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHH
Confidence 66 5555677777787888777777764432 1222556677788888
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHH
Q 006562 571 LECLQQVLYIDKRFSKAYHLRGLLLH 596 (640)
Q Consensus 571 ~~~~~~al~~~~~~~~~~~~la~~~~ 596 (640)
+.+++.+++.+|.+..+...++.+|.
T Consensus 243 i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 243 IYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 88888888888888888888877776
No 94
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.55 E-value=9.9e-13 Score=116.79 Aligned_cols=181 Identities=20% Similarity=0.194 Sum_probs=169.2
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006562 431 LEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACV 510 (640)
Q Consensus 431 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 510 (640)
...+...+-+....+|++..+ ..++..+...|+-+.+..+..++...+|.+...+..+|...+..|++..|+..++++.
T Consensus 49 ~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~ 127 (257)
T COG5010 49 TQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAA 127 (257)
T ss_pred hhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHh
Confidence 344666677777889999999 9999999999999999999999999999999999889999999999999999999999
Q ss_pred HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHH
Q 006562 511 KLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHL 590 (640)
Q Consensus 511 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 590 (640)
...|+++.+|..+|.+|.+.|+++.|...|.+++++.|..+.+..++|..+.-.|+++.|..++..+....+.+..+..+
T Consensus 128 ~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~N 207 (257)
T COG5010 128 RLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQN 207 (257)
T ss_pred ccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888889999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHhh
Q 006562 591 RGLLLHGLGQHKKAIKDLSSGL 612 (640)
Q Consensus 591 la~~~~~~g~~~~A~~~~~~al 612 (640)
++.+...+|++.+|.....+-+
T Consensus 208 LAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 208 LALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HHHHHhhcCChHHHHhhccccc
Confidence 9999999999999998776543
No 95
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.55 E-value=1.3e-11 Score=125.95 Aligned_cols=259 Identities=16% Similarity=0.094 Sum_probs=198.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 006562 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (640)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 460 (640)
.+.++..+.++...|++++|++++......-.+....+...|.++..+|++++|...|...++.+|++...+..+..+..
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHh
Confidence 46777888999999999999999999888888888999999999999999999999999999999999998888888773
Q ss_pred Hc-----CCHHHHHHHHHHHHHhCCCCHH--------------------------------HHHHHHHHHHhcCCHHHHH
Q 006562 461 AL-----GESVEAIQDLSKALEFEPNSAD--------------------------------ILHERGIVNFKFKDFNAAV 503 (640)
Q Consensus 461 ~~-----~~~~~A~~~~~~al~~~p~~~~--------------------------------~~~~la~~~~~~~~~~~A~ 503 (640)
.. .+.+.-...|+......|.... +...+-.+|.......-..
T Consensus 84 ~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred hhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHH
Confidence 33 2466677788877776664321 1111112222111111111
Q ss_pred HHHHHHHHh---------------CCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcC
Q 006562 504 EDLSACVKL---------------DKEN--KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN 566 (640)
Q Consensus 504 ~~~~~al~~---------------~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~ 566 (640)
..+...... .|.. ..+++.++..|-..|++++|+.++++++...|..++.+...|.++...|+
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCC
Confidence 222221111 0111 24567889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCC--CC-------HHHHHHHHHHHHHcCCccc
Q 006562 567 SEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP--SN-------IECLYLRASCYHAIGEYRE 637 (640)
Q Consensus 567 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~-------~~~~~~la~~~~~~g~~~~ 637 (640)
+.+|...++.+-.+++.+-..-...+..+.+.|+.++|...+......+. .. .......|.+|.+.|++..
T Consensus 244 ~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ 323 (517)
T PF12569_consen 244 LKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGL 323 (517)
T ss_pred HHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 99999999999999999888888889999999999999999887765442 11 1233457889999999988
Q ss_pred cc
Q 006562 638 AV 639 (640)
Q Consensus 638 Al 639 (640)
|+
T Consensus 324 AL 325 (517)
T PF12569_consen 324 AL 325 (517)
T ss_pred HH
Confidence 76
No 96
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.54 E-value=8e-13 Score=119.09 Aligned_cols=122 Identities=17% Similarity=0.157 Sum_probs=64.9
Q ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHH-HHhcC--HHHHHH
Q 006562 496 FKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFY-QDLAN--SEKALE 572 (640)
Q Consensus 496 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~-~~~g~--~~~A~~ 572 (640)
.++.++++..+++++..+|++...|..+|.++...|++++|+..|++++...|+++.++..+|.++ ...|+ +++|..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 334455555555555555555555555555555555555555555555555555555555555542 34444 355555
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCC
Q 006562 573 CLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS 617 (640)
Q Consensus 573 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 617 (640)
.++++++.+|+++.++..+|..+...|++++|+.+++++++..|.
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 555555555555555555555555555555555555555555444
No 97
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.54 E-value=1.3e-12 Score=117.72 Aligned_cols=123 Identities=20% Similarity=0.258 Sum_probs=72.8
Q ss_pred ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HhcCC--HHHHHH
Q 006562 428 QRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVN-FKFKD--FNAAVE 504 (640)
Q Consensus 428 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~~~--~~~A~~ 504 (640)
.++.++++..++++++.+|++...|..+|.+|...|++++|+..|++++++.|+++.++..+|.++ ...|+ +++|..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 445555666666666666666666666666666666666666666666666666666666666543 44444 356666
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccc
Q 006562 505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF 550 (640)
Q Consensus 505 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 550 (640)
.++++++.+|+++.+++.+|..++..|++++|+.+++++++..|.+
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPR 177 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 6666666666666666666666666666666666666665555443
No 98
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.53 E-value=3.8e-11 Score=112.65 Aligned_cols=253 Identities=15% Similarity=0.106 Sum_probs=181.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHH
Q 006562 382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA-GEAWKRRGQARA 460 (640)
Q Consensus 382 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~ 460 (640)
......|..-+..|+|..|.....+.-+..+...-++..-+.+.-++|+++.|-.++.++-+..+++ ..+....+.+..
T Consensus 85 ~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll 164 (400)
T COG3071 85 RKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLL 164 (400)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Confidence 3444556666667777777777777666555555566666667777777777777777777664332 345556677777
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----------------------------
Q 006562 461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKL---------------------------- 512 (640)
Q Consensus 461 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---------------------------- 512 (640)
..|++..|.....++++..|.++.+......+|...|+|......+.+.-+.
T Consensus 165 ~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~ 244 (400)
T COG3071 165 NRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNG 244 (400)
T ss_pred hCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcccc
Confidence 7777777777777777777777777777777777777777666655443321
Q ss_pred --------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 006562 513 --------------DKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVL 578 (640)
Q Consensus 513 --------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 578 (640)
-.+++.....++.-+...|+.++|.+....+++..-+ +.....++ ...-+++..=++..++.+
T Consensus 245 ~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D-~~L~~~~~--~l~~~d~~~l~k~~e~~l 321 (400)
T COG3071 245 SEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWD-PRLCRLIP--RLRPGDPEPLIKAAEKWL 321 (400)
T ss_pred chHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccC-hhHHHHHh--hcCCCCchHHHHHHHHHH
Confidence 1223555666777788889999999988888876443 22222222 224577888888888888
Q ss_pred HhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCCcccc
Q 006562 579 YIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREA 638 (640)
Q Consensus 579 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 638 (640)
+..|++|..+..+|.++.+.+.|.+|..+|+.+++..|+ ...+..+|.++.++|+..+|
T Consensus 322 ~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A 380 (400)
T COG3071 322 KQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEA 380 (400)
T ss_pred HhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHH
Confidence 889999999999999999999999999999999998887 56777899999999988776
No 99
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.53 E-value=5.3e-12 Score=110.86 Aligned_cols=186 Identities=18% Similarity=0.124 Sum_probs=161.9
Q ss_pred cCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 006562 376 SKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR 455 (640)
Q Consensus 376 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 455 (640)
..+..-..+-....+.+..|+.+-|..++++.....|.+..+....|..+...|++++|+++|+..++.+|.+..++...
T Consensus 47 ~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRK 126 (289)
T KOG3060|consen 47 LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRK 126 (289)
T ss_pred cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHH
Confidence 34444445556677788889999999999998888899999999999999999999999999999999999998888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC---C
Q 006562 456 GQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIG---E 532 (640)
Q Consensus 456 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g---~ 532 (640)
--+...+|+.-+|++.+...++.++.+.++|..++.+|+..|+|++|.-++++++-..|.++..+..+|.+++-.| +
T Consensus 127 lAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN 206 (289)
T KOG3060|consen 127 LAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAEN 206 (289)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHH
Confidence 8888889999999999999999999999999999999999999999999999999999999999999999988876 5
Q ss_pred HHHHHHHHHHHHccCcccHHHHHHHHHHH
Q 006562 533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFY 561 (640)
Q Consensus 533 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 561 (640)
+.-|.++|.++++++|.+..+++.+-.+.
T Consensus 207 ~~~arkyy~~alkl~~~~~ral~GI~lc~ 235 (289)
T KOG3060|consen 207 LELARKYYERALKLNPKNLRALFGIYLCG 235 (289)
T ss_pred HHHHHHHHHHHHHhChHhHHHHHHHHHHH
Confidence 66789999999999997777776665543
No 100
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.53 E-value=1.2e-12 Score=139.31 Aligned_cols=206 Identities=13% Similarity=-0.057 Sum_probs=180.4
Q ss_pred HhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----
Q 006562 409 KEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA----- 483 (640)
Q Consensus 409 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~----- 483 (640)
..+|.+..++..++..+...+++++|+..++.+++..|+....++.+|.++.+.+++.++... .++...+.+.
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~v 102 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIV 102 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHH
Confidence 357889999999999999999999999999999999999999999999999999988877666 6666555554
Q ss_pred --------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcc
Q 006562 484 --------------DILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549 (640)
Q Consensus 484 --------------~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 549 (640)
.+++.+|.||-++|++++|...|+++++.+|+++.++.++|..|... +.++|+.++.+++..
T Consensus 103 e~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~--- 178 (906)
T PRK14720 103 EHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR--- 178 (906)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---
Confidence 78999999999999999999999999999999999999999999999 999999999999876
Q ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHH--------------------HHHHHHHHHhcCCHHHHHHHHH
Q 006562 550 FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA--------------------YHLRGLLLHGLGQHKKAIKDLS 609 (640)
Q Consensus 550 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------------------~~~la~~~~~~g~~~~A~~~~~ 609 (640)
+...+++..+..++.+.+..+|++... +.-+=..|...+++++++.+++
T Consensus 179 -----------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK 247 (906)
T PRK14720 179 -----------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILK 247 (906)
T ss_pred -----------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 555667888888888888888766543 2223367788899999999999
Q ss_pred HhhccCCCCHHHHHHHHHHHHH
Q 006562 610 SGLGIDPSNIECLYLRASCYHA 631 (640)
Q Consensus 610 ~al~~~p~~~~~~~~la~~~~~ 631 (640)
.+++.+|+|..+...++.+|..
T Consensus 248 ~iL~~~~~n~~a~~~l~~~y~~ 269 (906)
T PRK14720 248 KILEHDNKNNKAREELIRFYKE 269 (906)
T ss_pred HHHhcCCcchhhHHHHHHHHHH
Confidence 9999999999999999999973
No 101
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.52 E-value=3.4e-09 Score=101.41 Aligned_cols=79 Identities=10% Similarity=0.059 Sum_probs=68.0
Q ss_pred HHHHHHHHccc-CchhHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc
Q 006562 56 IRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHAL 134 (640)
Q Consensus 56 i~~y~~ai~~~-~~~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~~~~A~~~~~~al~~~~ 134 (640)
...|+..|..+ -+...+..-|.--..++++..|...+++||..|..+.-.|+..+..=++..+.-.|...|.+|+.+=|
T Consensus 59 RkefEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lP 138 (677)
T KOG1915|consen 59 RKEFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILP 138 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcc
Confidence 34566666666 55566888888999999999999999999999999999999999999999999999999999965544
No 102
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.51 E-value=9.4e-14 Score=129.52 Aligned_cols=254 Identities=19% Similarity=0.209 Sum_probs=149.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC------CCcHHHHHHH
Q 006562 386 SRGIAQVNEGKYASAISIFDQILKEDPMY----PEALIGRGTARAFQRELEAAISDFTEAIQSN------PSAGEAWKRR 455 (640)
Q Consensus 386 ~~a~~~~~~g~~~~A~~~~~~~l~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l 455 (640)
.-|.-+++.|++...+..|+.+++...++ ..+|..+|.+|+.+++|++|+++-.--+.+. -..+...-++
T Consensus 22 lEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNL 101 (639)
T KOG1130|consen 22 LEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNL 101 (639)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccc
Confidence 34666777777777777777777766554 2456667777777777777776643322111 1122334456
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHhcCC--------------------HHHHHHHHHHH
Q 006562 456 GQARAALGESVEAIQDLSKALEFEPN------SADILHERGIVNFKFKD--------------------FNAAVEDLSAC 509 (640)
Q Consensus 456 a~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~--------------------~~~A~~~~~~a 509 (640)
|..+-..|.|++|+.+..+-+.+... ...+++++|.+|...|+ ++.|.++|..-
T Consensus 102 GNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eN 181 (639)
T KOG1130|consen 102 GNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMEN 181 (639)
T ss_pred cchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHH
Confidence 77777777777777766665544221 13466777777765543 23344444444
Q ss_pred HHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccc------HHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 006562 510 VKLDKEN------KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF------LEAWGHLTQFYQDLANSEKALECLQQV 577 (640)
Q Consensus 510 l~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~a 577 (640)
+++.... ..++-++|..|+.+|+|+.|+..-+.-+.+.... ..++.++|.++...|+++.|+++|++.
T Consensus 182 L~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~t 261 (639)
T KOG1130|consen 182 LELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLT 261 (639)
T ss_pred HHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHH
Confidence 4332211 2345556666677777777776665555543322 346667777777777777777777766
Q ss_pred HHhCC------CChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCC------CCHHHHHHHHHHHHHcCCccccc
Q 006562 578 LYIDK------RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP------SNIECLYLRASCYHAIGEYREAV 639 (640)
Q Consensus 578 l~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~Al 639 (640)
+.+.- ..+...+.+|..|.-..++++|+.++.+-+.+.. ....+++.||..+..+|..++|+
T Consensus 262 l~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl 335 (639)
T KOG1130|consen 262 LNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKAL 335 (639)
T ss_pred HHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHH
Confidence 54321 1234556667777777777777777766554422 12356666777777777666654
No 103
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=3.3e-10 Score=111.30 Aligned_cols=225 Identities=15% Similarity=0.017 Sum_probs=134.9
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006562 414 YPEALIGRGTARAFQRELEAAISDFTEAIQSN--------PSA-------GEAWKRRGQARAALGESVEAIQDLSKALEF 478 (640)
Q Consensus 414 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~-------~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 478 (640)
..+.+++.|-++...|+|.+|++.+++++.+. ... ..+...++.++..+|+.++|...|...++.
T Consensus 174 syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~ 253 (652)
T KOG2376|consen 174 SYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKR 253 (652)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh
Confidence 46778999999999999999999999995332 111 235677899999999999999999999988
Q ss_pred CCCCHHHHHHH-------------------------------------------------HHHHHhcCCHHHHHHHHHHH
Q 006562 479 EPNSADILHER-------------------------------------------------GIVNFKFKDFNAAVEDLSAC 509 (640)
Q Consensus 479 ~p~~~~~~~~l-------------------------------------------------a~~~~~~~~~~~A~~~~~~a 509 (640)
+|.+....... +.+.+..+..+.+.+.....
T Consensus 254 ~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~l 333 (652)
T KOG2376|consen 254 NPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASL 333 (652)
T ss_pred cCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhC
Confidence 87664221111 11111111111111111111
Q ss_pred HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------C
Q 006562 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF-LEAWGHLTQFYQDLANSEKALECLQQVLYI-------D 581 (640)
Q Consensus 510 l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------~ 581 (640)
-...|....-.........+...+.+|...+......+|.. ..+...++.+...+|+++.|+..+...+.. .
T Consensus 334 p~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~ 413 (652)
T KOG2376|consen 334 PGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEA 413 (652)
T ss_pred CccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhh
Confidence 11112211111222333333336778888888888888877 667778888888899999999888833311 1
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHhhc-------cCCCCHHHHHHHHHHHHHcCCcccc
Q 006562 582 KRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLG-------IDPSNIECLYLRASCYHAIGEYREA 638 (640)
Q Consensus 582 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-------~~p~~~~~~~~la~~~~~~g~~~~A 638 (640)
...|.+-..+-..+...++.+.|...+..++. -.+.....+...+..-.+.|+-++|
T Consensus 414 ~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea 477 (652)
T KOG2376|consen 414 KHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEA 477 (652)
T ss_pred ccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHH
Confidence 12344444455556666665555555555543 2222234555566666666776665
No 104
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.50 E-value=1.2e-12 Score=131.22 Aligned_cols=223 Identities=17% Similarity=0.138 Sum_probs=199.6
Q ss_pred CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 006562 377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG 456 (640)
Q Consensus 377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 456 (640)
-|........++..++..|-...|+.+|++ +..|-....||...|+..+|.....+-++ .|.++..|..+|
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Er--------lemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LG 464 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFER--------LEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLG 464 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHh--------HHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhh
Confidence 344556677889999999999999999997 45677788999999999999999999998 677888888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH
Q 006562 457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKA 536 (640)
Q Consensus 457 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A 536 (640)
.+.....-|++|.++.+.. +..+...+|......++|+++.++++..++++|-....|+.+|.+..+.++++.|
T Consensus 465 Dv~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred hhccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 8877766667766666543 3446777888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhcc
Q 006562 537 EEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI 614 (640)
Q Consensus 537 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 614 (640)
.++|..++..+|++..+|.+++..|...|+-.+|...++++++.+-++..+|.+...+....|.+++|+..+.+.+.+
T Consensus 539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998865
No 105
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.48 E-value=8.5e-10 Score=101.57 Aligned_cols=382 Identities=15% Similarity=0.028 Sum_probs=246.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHcccCch--hHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCH
Q 006562 42 ELAKLCSLRNWSKAIRILDSLLAQSYEI--QDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRK 119 (640)
Q Consensus 42 ~~~~~~~~~~y~~Ai~~y~~ai~~~~~~--~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~~ 119 (640)
++..|+..+||..||..++-.+..+... ..-.=.|.|++++|+|++|+..|+.+...+.-..+.+..++.+++-+|.|
T Consensus 28 ~Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 28 ELEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred hHHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHH
Confidence 5889999999999999999999887222 22334789999999999999999999998877899999999999999999
Q ss_pred HHHHHHHHHHHhhccCChHHHHHHHhHHHHHHHHhhhccchhhhhhcccccccccccCCCCCCCcchhhhhcCCCCCccc
Q 006562 120 EEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICD 199 (640)
Q Consensus 120 ~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (640)
.+|...-.+| |..|.-..-+..+.-...+-+.-+ .++.
T Consensus 108 ~eA~~~~~ka----~k~pL~~RLlfhlahklndEk~~~----~fh~---------------------------------- 145 (557)
T KOG3785|consen 108 IEAKSIAEKA----PKTPLCIRLLFHLAHKLNDEKRIL----TFHS---------------------------------- 145 (557)
T ss_pred HHHHHHHhhC----CCChHHHHHHHHHHHHhCcHHHHH----HHHH----------------------------------
Confidence 9999888777 444433222222211111000000 0000
Q ss_pred cccCCccccccccCCCCCCCCcccccccccCCCcccccccccccCCccccccccCCCCCCCCccccccccchhhccccCC
Q 006562 200 SSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSD 279 (640)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (640)
.+
T Consensus 146 ----------------------------------------~L-------------------------------------- 147 (557)
T KOG3785|consen 146 ----------------------------------------SL-------------------------------------- 147 (557)
T ss_pred ----------------------------------------HH--------------------------------------
Confidence 00
Q ss_pred cccccCCCCCcccccccCCcccccccccccccccCccCCCCCCCCcccccccccCCCCCCchHHHHHhhHHHhhhhHHHH
Q 006562 280 DFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETS 359 (640)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 359 (640)
++..+-.-.+..+. .+
T Consensus 148 --------------------------------------------------------qD~~EdqLSLAsvh--------Ym 163 (557)
T KOG3785|consen 148 --------------------------------------------------------QDTLEDQLSLASVH--------YM 163 (557)
T ss_pred --------------------------------------------------------hhhHHHHHhHHHHH--------HH
Confidence 00000000000011 11
Q ss_pred HHHHhhHHHHHhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 006562 360 NEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFT 439 (640)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 439 (640)
....+.....+.++...+|.-...-..+|.+|+...-|+-+.+.+.--++..|+++.+....+-.+++.=+-..|.....
T Consensus 164 R~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k 243 (557)
T KOG3785|consen 164 RMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKK 243 (557)
T ss_pred HHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHH
Confidence 11222333356667777777777888889999999999999999999999999988887777766655422111111111
Q ss_pred ----------------------------HHHHhCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 006562 440 ----------------------------EAIQSNPS----AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILH 487 (640)
Q Consensus 440 ----------------------------~al~~~p~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 487 (640)
-+++.-|. -|++..++...|..+++..+|+...+. ++|..|.-+.
T Consensus 244 ~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kd---l~PttP~Eyi 320 (557)
T KOG3785|consen 244 ELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKD---LDPTTPYEYI 320 (557)
T ss_pred HHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhh---cCCCChHHHH
Confidence 12233332 256778888888899999998887654 6788888888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH---hC------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHH
Q 006562 488 ERGIVNFKFKDFNAAVEDLSACVK---LD------KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLT 558 (640)
Q Consensus 488 ~la~~~~~~~~~~~A~~~~~~al~---~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la 558 (640)
..|.+....|+--...++++-+-. +- -+.......++.+++...++++.+.++...-....++....++++
T Consensus 321 lKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~A 400 (557)
T KOG3785|consen 321 LKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLA 400 (557)
T ss_pred HHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHH
Confidence 888888877765544444443322 11 112233455666667777777777777766666666667777777
Q ss_pred HHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006562 559 QFYQDLANSEKALECLQQVLYID-KRFSKAYHLRGLLLHGLGQHKKAIKDLSS 610 (640)
Q Consensus 559 ~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 610 (640)
..+...|++.+|.+.|-+.-... .+.......+|.+|...+.++-|...+-+
T Consensus 401 QAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk 453 (557)
T KOG3785|consen 401 QAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLK 453 (557)
T ss_pred HHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHh
Confidence 77777788887777776653332 12233455677777777777777766643
No 106
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.45 E-value=2.1e-11 Score=129.26 Aligned_cols=151 Identities=11% Similarity=0.014 Sum_probs=121.4
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 006562 436 SDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE 515 (640)
Q Consensus 436 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 515 (640)
.-........|.+++++..+|.+....|.+++|..+++.++++.|++..++..++.++.+.+++++|+..+++++..+|+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~ 152 (694)
T PRK15179 73 PELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS 152 (694)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC
Confidence 33333445567778888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChH
Q 006562 516 NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSK 586 (640)
Q Consensus 516 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 586 (640)
+...++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|+.++|...|+++++...+-..
T Consensus 153 ~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~ 223 (694)
T PRK15179 153 SAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGAR 223 (694)
T ss_pred CHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchH
Confidence 88888888888888888888888888888877888888888888888888888888888888877654443
No 107
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.45 E-value=3.3e-12 Score=108.93 Aligned_cols=116 Identities=23% Similarity=0.233 Sum_probs=75.6
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Q 006562 505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF 584 (640)
Q Consensus 505 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 584 (640)
.+++++..+|++....+.+|..+...|++++|...+++++..+|.++.++..+|.++...|++++|+.++++++..+|.+
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 84 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD 84 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45566666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHH
Q 006562 585 SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE 620 (640)
Q Consensus 585 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 620 (640)
+..++.+|.++...|++++|+..|+++++.+|++..
T Consensus 85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 85 PRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 666666666666666666666666666666666554
No 108
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.44 E-value=4.1e-10 Score=105.88 Aligned_cols=241 Identities=15% Similarity=0.066 Sum_probs=199.4
Q ss_pred HhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Q 006562 370 VTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPM-YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA 448 (640)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 448 (640)
+.+..+..+...-.++.-+.+.-+.|+++.|-.++.++-+..++ ...+...++.+....|++..|.....++++..|.+
T Consensus 107 ~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~ 186 (400)
T COG3071 107 LRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRH 186 (400)
T ss_pred HHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCC
Confidence 34444555566667777888899999999999999999888443 46778888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------------------------------CCCHHHH
Q 006562 449 GEAWKRRGQARAALGESVEAIQDLSKALEFE------------------------------------------PNSADIL 486 (640)
Q Consensus 449 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------------------------------------------p~~~~~~ 486 (640)
+.+......+|...|+|.....++.+.-+.. ..++.+.
T Consensus 187 ~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~ 266 (400)
T COG3071 187 PEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELV 266 (400)
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHH
Confidence 9999999999999999988877776544321 1234566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcC
Q 006562 487 HERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN 566 (640)
Q Consensus 487 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~ 566 (640)
..++.-+...|+.++|.+....+++..-+.. ....++ ...-+++..-++..++.+...|+++..+..+|.++.+.+.
T Consensus 267 ~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~--~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~ 343 (400)
T COG3071 267 VAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIP--RLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKL 343 (400)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHHh--hcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhH
Confidence 6778888999999999999999998865433 222222 2356788889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhcc
Q 006562 567 SEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI 614 (640)
Q Consensus 567 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 614 (640)
|.+|..+|+.++...|+ ...+..+|.++.+.|+..+|.+.++.++..
T Consensus 344 w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 344 WGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 99999999999988875 677899999999999999999999998843
No 109
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.43 E-value=5.7e-12 Score=107.44 Aligned_cols=116 Identities=16% Similarity=0.178 Sum_probs=72.8
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 006562 403 IFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS 482 (640)
Q Consensus 403 ~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 482 (640)
.|++++..+|++..+.+.+|.++...|++++|...+++++..+|.++.++..+|.++...|++++|+..+++++..+|.+
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 84 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD 84 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45556666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHH
Q 006562 483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKS 518 (640)
Q Consensus 483 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~ 518 (640)
+..++.+|.++...|++++|+..++++++.+|++..
T Consensus 85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 85 PRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 666666666666666666666666666666665543
No 110
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.43 E-value=1.5e-11 Score=130.38 Aligned_cols=157 Identities=10% Similarity=-0.011 Sum_probs=144.7
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006562 398 ASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALE 477 (640)
Q Consensus 398 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 477 (640)
.+++.-........|.++.++..+|.+....|.+++|...++.+++..|++..++..++.++.+.+++++|+..+++++.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~ 148 (694)
T PRK15179 69 AAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS 148 (694)
T ss_pred HhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Confidence 34444444455668899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHH
Q 006562 478 FEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAW 554 (640)
Q Consensus 478 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 554 (640)
..|++...++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|+.++|...|++++.....-...+
T Consensus 149 ~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~ 225 (694)
T PRK15179 149 GGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKL 225 (694)
T ss_pred cCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999865544443
No 111
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=4e-12 Score=120.18 Aligned_cols=122 Identities=21% Similarity=0.249 Sum_probs=103.4
Q ss_pred HhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHcccC----c------------hhHHHhHHHHHHhhhcHHHHHHHHHHH
Q 006562 32 VMASAITARIELAKLCSLRNWSKAIRILDSLLAQSY----E------------IQDICNRAFCYSQLELHKHVIRDCDKA 95 (640)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~y~~Ai~~y~~ai~~~~----~------------~~~~~~~A~~~~~~g~~~~Ai~~~~~a 95 (640)
..+-+...|-.+..+|+.|+|..|+..|++|+..-. . ..++.|+|.||++++.|.+|+..|+++
T Consensus 204 ~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kv 283 (397)
T KOG0543|consen 204 RLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKV 283 (397)
T ss_pred HHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHH
Confidence 444555666677789999999999999999875421 1 112689999999999999999999999
Q ss_pred HHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHHHHHHHhHHHHHHHH
Q 006562 96 LQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAA 153 (640)
Q Consensus 96 l~~~P~~~~a~~~~g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~ 153 (640)
|.++|+|++|+||+|++|..+|+++.|+..|++++++.|+.-+....+..|.......
T Consensus 284 Le~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~ 341 (397)
T KOG0543|consen 284 LELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREY 341 (397)
T ss_pred HhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988777777776655443
No 112
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.41 E-value=1.2e-12 Score=119.33 Aligned_cols=104 Identities=20% Similarity=0.170 Sum_probs=96.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHcccC-chhHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCC
Q 006562 40 RIELAKLCSLRNWSKAIRILDSLLAQSY-EIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGR 118 (640)
Q Consensus 40 ~~~~~~~~~~~~y~~Ai~~y~~ai~~~~-~~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~ 118 (640)
+-.+.+||++|.|++||+||+++|...| |+..+.|||.+|++++.|..|..+|+.|+.+|-.+.+||.++|.+-..+|+
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 5567799999999999999999999996 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCChHHHHHH
Q 006562 119 KEEALSVWEKGYEHALHQSADLKQF 143 (640)
Q Consensus 119 ~~~A~~~~~~al~~~~~~~~~~~~~ 143 (640)
..+|.+.++.+|++.|+..+-.+..
T Consensus 181 ~~EAKkD~E~vL~LEP~~~ELkK~~ 205 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNIELKKSL 205 (536)
T ss_pred HHHHHHhHHHHHhhCcccHHHHHHH
Confidence 9999999999999999865444333
No 113
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.40 E-value=6.2e-12 Score=124.65 Aligned_cols=111 Identities=23% Similarity=0.260 Sum_probs=100.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHccc-CchhHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCC
Q 006562 40 RIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGR 118 (640)
Q Consensus 40 ~~~~~~~~~~~~y~~Ai~~y~~ai~~~-~~~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~ 118 (640)
+.....+|..|+|++|+.+|++||+++ .++.+|+++|.+|.++|++++|+.++++++.++|++..+|+++|.+|..+|+
T Consensus 6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 6 EDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 345667899999999999999999999 5567799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCChHHHHHHHhHHHHH
Q 006562 119 KEEALSVWEKGYEHALHQSADLKQFLELEELL 150 (640)
Q Consensus 119 ~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~ 150 (640)
+++|+..|++++++.|+.+.....+..+....
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999988777666555444
No 114
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.40 E-value=6.4e-12 Score=113.83 Aligned_cols=117 Identities=26% Similarity=0.370 Sum_probs=69.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhc
Q 006562 486 LHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565 (640)
Q Consensus 486 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g 565 (640)
+..-|.-++..++|.+|+..|.+||+++|.++..|.+.+.+|.++|.++.|++.++.++.++|.+..+|..||.+|..+|
T Consensus 84 LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 84 LKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccC
Confidence 34445555555666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHH
Q 006562 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHK 602 (640)
Q Consensus 566 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~ 602 (640)
++++|++.|+++++++|++...+..|..+-...+...
T Consensus 164 k~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 6666666666666666666555555555544444433
No 115
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.40 E-value=8.6e-12 Score=125.26 Aligned_cols=211 Identities=15% Similarity=0.107 Sum_probs=188.6
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006562 414 YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVN 493 (640)
Q Consensus 414 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 493 (640)
.......++..+...|-...|+..|++.- .|.....||...|+..+|.....+-++ .|.++..|..+|.+.
T Consensus 397 ~Wq~q~~laell~slGitksAl~I~Erle--------mw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 397 IWQLQRLLAELLLSLGITKSALVIFERLE--------MWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVL 467 (777)
T ss_pred cchHHHHHHHHHHHcchHHHHHHHHHhHH--------HHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhc
Confidence 35566789999999999999999999853 455688999999999999999999998 666788888888887
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 006562 494 FKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALEC 573 (640)
Q Consensus 494 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 573 (640)
....-|++|.++.+.. +..+...+|......++|.++.+.++..++++|-....|+.+|.+..+.++++.|...
T Consensus 468 ~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~a 541 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKA 541 (777)
T ss_pred cChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHH
Confidence 7776677776666553 3457777888888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCCccccc
Q 006562 574 LQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAV 639 (640)
Q Consensus 574 ~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Al 639 (640)
|.+++..+|++.++|.+++..|...|+..+|...++++++.+-++...|.+...+....|.+++|+
T Consensus 542 F~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~ 607 (777)
T KOG1128|consen 542 FHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAI 607 (777)
T ss_pred HHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHH
Confidence 999999999999999999999999999999999999999999888999999999999999999886
No 116
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.37 E-value=6.2e-12 Score=119.88 Aligned_cols=235 Identities=16% Similarity=0.069 Sum_probs=171.7
Q ss_pred ccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CcHHHHHHHH
Q 006562 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP--SAGEAWKRRG 456 (640)
Q Consensus 379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la 456 (640)
......+.+.+.++..|++...+..... ..+....+...++..+...++.+.++..++..+.... .++.+....|
T Consensus 33 ~~~e~~~~~~Rs~iAlg~~~~vl~ei~~---~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A 109 (290)
T PF04733_consen 33 NKLERDFYQYRSYIALGQYDSVLSEIKK---SSSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAA 109 (290)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHS-T---TSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCChhHHHHHhcc---CCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHH
Confidence 3455667778888888888776654433 2233345556666666554566666666655443321 3455666677
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC--CHH
Q 006562 457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIG--EYK 534 (640)
Q Consensus 457 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g--~~~ 534 (640)
.++...|++++|++.+.+. .+.+.......+++..++++.|.+.++.+-+.+.+..-.....+++....| .+.
T Consensus 110 ~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~ 184 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQ 184 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHH
Confidence 8888889999998888654 567777888889999999999999999988887777766666777777766 588
Q ss_pred HHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCH-HHHHHHHHHhhc
Q 006562 535 KAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQH-KKAIKDLSSGLG 613 (640)
Q Consensus 535 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~ 613 (640)
+|...|++.....+.++..+..++.+++.+|++++|...+.+++..+|.++.++.+++.+...+|+. +.+.+++.+...
T Consensus 185 ~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 185 DAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 9999999988888888888889999999999999999999999999999999999999998888888 667778888888
Q ss_pred cCCCCHHH
Q 006562 614 IDPSNIEC 621 (640)
Q Consensus 614 ~~p~~~~~ 621 (640)
.+|+++.+
T Consensus 265 ~~p~h~~~ 272 (290)
T PF04733_consen 265 SNPNHPLV 272 (290)
T ss_dssp HTTTSHHH
T ss_pred hCCCChHH
Confidence 88887743
No 117
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.35 E-value=5.4e-10 Score=108.03 Aligned_cols=153 Identities=20% Similarity=0.164 Sum_probs=105.4
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 006562 412 PMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGI 491 (640)
Q Consensus 412 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 491 (640)
|....+++..+..++..|++++|+..+...+...|+|+..+...+.++...++..+|.+.+++++.++|..+..+..+|.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 56666777777777777777777777777777777777777777777777777777777777777777776667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHH
Q 006562 492 VNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKAL 571 (640)
Q Consensus 492 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~ 571 (640)
.+++.|++.+|+..++..+..+|+++..|..++..|..+|+..+|.... +..|...|++++|+
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~~A~ 445 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLEQAI 445 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHHHHH
Confidence 7777777777777777777777777777777777777777655554432 33445566667776
Q ss_pred HHHHHHHHhC
Q 006562 572 ECLQQVLYID 581 (640)
Q Consensus 572 ~~~~~al~~~ 581 (640)
..+.++.+..
T Consensus 446 ~~l~~A~~~~ 455 (484)
T COG4783 446 IFLMRASQQV 455 (484)
T ss_pred HHHHHHHHhc
Confidence 6666666554
No 118
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.34 E-value=1e-11 Score=116.20 Aligned_cols=256 Identities=18% Similarity=0.151 Sum_probs=191.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------c
Q 006562 381 VDFRLSRGIAQVNEGKYASAISIFDQILKE------DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS------A 448 (640)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~ 448 (640)
..+|..+|.+|+..++|.+|+++-..-+.+ .-..+...-++|.++..+|.|++|+.+..+-+..... .
T Consensus 55 SAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e 134 (639)
T KOG1130|consen 55 SAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLE 134 (639)
T ss_pred HHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhh
Confidence 457888999999999999999986543322 1123455678999999999999999999887765432 3
Q ss_pred HHHHHHHHHHHHHcCCH-------------HH-------HHHHHHHHHHhCCCC------HHHHHHHHHHHHhcCCHHHH
Q 006562 449 GEAWKRRGQARAALGES-------------VE-------AIQDLSKALEFEPNS------ADILHERGIVNFKFKDFNAA 502 (640)
Q Consensus 449 ~~~~~~la~~~~~~~~~-------------~~-------A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A 502 (640)
..+++++|.+|...|+- ++ |.++|..-+++.... ..++-.+|..|+-+|+|+.|
T Consensus 135 ~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~a 214 (639)
T KOG1130|consen 135 SRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQA 214 (639)
T ss_pred hHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHH
Confidence 56899999999876542 33 444444444332221 23677788899999999999
Q ss_pred HHHHHHHHHhCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCc----c--cHHHHHHHHHHHHHhcCHHHH
Q 006562 503 VEDLSACVKLDKE------NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR----N--FLEAWGHLTQFYQDLANSEKA 570 (640)
Q Consensus 503 ~~~~~~al~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~----~--~~~~~~~la~~~~~~g~~~~A 570 (640)
+..-+.-+.+... .-.++.++|.++...|+++.|+++|.+.+.+.- . .....+.+|..|....++++|
T Consensus 215 i~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kA 294 (639)
T KOG1130|consen 215 IHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKA 294 (639)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHH
Confidence 9988877766432 246788999999999999999999998776532 2 255678899999999999999
Q ss_pred HHHHHHHHHhCC------CChHHHHHHHHHHHhcCCHHHHHHHHHHhhcc-----CCC-CHHHHHHHHHHHHHcCCcc
Q 006562 571 LECLQQVLYIDK------RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI-----DPS-NIECLYLRASCYHAIGEYR 636 (640)
Q Consensus 571 ~~~~~~al~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~-~~~~~~~la~~~~~~g~~~ 636 (640)
+.++.+-+.+.. ....+++.+|..+...|..++|+.+.+..++. +|. ...+..++...-..+|..+
T Consensus 295 I~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~d 372 (639)
T KOG1130|consen 295 ITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQED 372 (639)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCCc
Confidence 999998876643 34568999999999999999999998887754 222 2356667777777777643
No 119
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.34 E-value=2.8e-11 Score=115.42 Aligned_cols=239 Identities=14% Similarity=0.071 Sum_probs=142.8
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Q 006562 389 IAQVNEGKYASAISIFDQILKEDPM-YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVE 467 (640)
Q Consensus 389 ~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~ 467 (640)
..++..|+|..++..++ ....++. .......+.+++..+|+++..+..... ..+....+...++..+...++.+.
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~---~~~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKK---SSSPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T---TSSCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc---CCChhHHHHHHHHHHHhCccchHH
Confidence 44566777777776555 2222221 244556677777777776655544332 112223344455555544445555
Q ss_pred HHHHHHHHHHhCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 006562 468 AIQDLSKALEFEP--NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ 545 (640)
Q Consensus 468 A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 545 (640)
++..++..+.... .++.+....|.++...|++++|++.+.+. .+.+.......++..+++++.|.+.++.+.+
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5555554433221 23344555566677777777777776653 4556666667777777777777777777777
Q ss_pred cCcccHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHH
Q 006562 546 LDRNFLEAWGHLTQFYQDLA--NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLY 623 (640)
Q Consensus 546 ~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 623 (640)
.+.+..-.....+++....| .+.+|..+|+...+..+..+..+..++.++..+|++++|...+++++..+|++++++.
T Consensus 160 ~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~La 239 (290)
T PF04733_consen 160 IDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLA 239 (290)
T ss_dssp CSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHH
Confidence 76665555555555555555 4777777777766666667777777777777777777777777777777777777777
Q ss_pred HHHHHHHHcCCcc
Q 006562 624 LRASCYHAIGEYR 636 (640)
Q Consensus 624 ~la~~~~~~g~~~ 636 (640)
+++.+...+|+..
T Consensus 240 Nliv~~~~~gk~~ 252 (290)
T PF04733_consen 240 NLIVCSLHLGKPT 252 (290)
T ss_dssp HHHHHHHHTT-TC
T ss_pred HHHHHHHHhCCCh
Confidence 7777777777663
No 120
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.33 E-value=1.3e-08 Score=116.38 Aligned_cols=235 Identities=17% Similarity=0.060 Sum_probs=177.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--------c
Q 006562 383 FRLSRGIAQVNEGKYASAISIFDQILKEDPM------YPEALIGRGTARAFQRELEAAISDFTEAIQSNPS--------A 448 (640)
Q Consensus 383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--------~ 448 (640)
....+|..+...|++++|...+.+++..... ...++..+|.++...|+++.|...+++++..... .
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 572 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH 572 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence 4556788899999999999999999875332 1345677899999999999999999998875221 1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc---HHHH
Q 006562 449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPN-----SADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN---KSAY 520 (640)
Q Consensus 449 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~ 520 (640)
...+..+|.++...|++++|...+.+++..... ....+..++.++...|+++.|...+.++....+.. ....
T Consensus 573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~ 652 (903)
T PRK04841 573 EFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWI 652 (903)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHh
Confidence 234557788999999999999999999876332 24456678899999999999999999997763322 1111
Q ss_pred H----HHHHHHHHcCCHHHHHHHHHHHHccCcccH----HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC------CChH
Q 006562 521 T----YLGLALSSIGEYKKAEEAHLKAIQLDRNFL----EAWGHLTQFYQDLANSEKALECLQQVLYIDK------RFSK 586 (640)
Q Consensus 521 ~----~la~~~~~~g~~~~A~~~~~~a~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~------~~~~ 586 (640)
. .....+...|+.+.|...+.......+... ..+..++.++...|++++|...+++++.... ....
T Consensus 653 ~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~ 732 (903)
T PRK04841 653 ANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNR 732 (903)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence 1 122445567899999999877665332222 2246789999999999999999999987632 2245
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhccCCC
Q 006562 587 AYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS 617 (640)
Q Consensus 587 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 617 (640)
++..+|.++...|+.++|...+.+++++...
T Consensus 733 ~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 733 NLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 7888999999999999999999999987644
No 121
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.33 E-value=4.9e-10 Score=108.34 Aligned_cols=153 Identities=22% Similarity=0.154 Sum_probs=141.2
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 006562 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGL 525 (640)
Q Consensus 446 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~ 525 (640)
|....+++..+..++..|++++|...+...+...|+++..+...+.+++..|+..+|.+.+++++.+.|+.+..++++|.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 67788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHH
Q 006562 526 ALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAI 605 (640)
Q Consensus 526 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~ 605 (640)
++...|++.+|+..++..+..+|+++..|..++..|..+|+..++.. ..+..+...|++++|+
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~-----------------A~AE~~~~~G~~~~A~ 445 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL-----------------ARAEGYALAGRLEQAI 445 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH-----------------HHHHHHHhCCCHHHHH
Confidence 99999999999999999999999999999999999999998776654 4466777889999999
Q ss_pred HHHHHhhccC
Q 006562 606 KDLSSGLGID 615 (640)
Q Consensus 606 ~~~~~al~~~ 615 (640)
..+..+.+..
T Consensus 446 ~~l~~A~~~~ 455 (484)
T COG4783 446 IFLMRASQQV 455 (484)
T ss_pred HHHHHHHHhc
Confidence 9999988765
No 122
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.32 E-value=7.1e-11 Score=98.20 Aligned_cols=102 Identities=15% Similarity=0.057 Sum_probs=63.0
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 006562 514 KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGL 593 (640)
Q Consensus 514 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~ 593 (640)
++..+..+.+|..+...|++++|...|+-....+|.+...|++||.++..+|++++|+..|.+++.++|+++.++...|.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 44455555666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHhcCCHHHHHHHHHHhhccC
Q 006562 594 LLHGLGQHKKAIKDLSSGLGID 615 (640)
Q Consensus 594 ~~~~~g~~~~A~~~~~~al~~~ 615 (640)
+++..|+.+.|.+.|+.++...
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHHh
Confidence 6666666666666666665544
No 123
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.32 E-value=1e-10 Score=97.32 Aligned_cols=109 Identities=15% Similarity=0.096 Sum_probs=95.4
Q ss_pred hhhccC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHH
Q 006562 372 RISKSK-SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGE 450 (640)
Q Consensus 372 ~~~~~~-~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 450 (640)
-+.... +...+..+..|..++..|++++|...|+-+...+|.++..|+++|.++..+|++.+|+..|.+++.++|+++.
T Consensus 25 ~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~ 104 (157)
T PRK15363 25 MLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQ 104 (157)
T ss_pred HHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCch
Confidence 334455 6667888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 006562 451 AWKRRGQARAALGESVEAIQDLSKALEFEP 480 (640)
Q Consensus 451 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p 480 (640)
.++..|.+++..|+.+.|...|+.++....
T Consensus 105 ~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 105 APWAAAECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999888763
No 124
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.31 E-value=1.2e-08 Score=92.05 Aligned_cols=282 Identities=18% Similarity=0.200 Sum_probs=194.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHcccC-chhHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHH
Q 006562 43 LAKLCSLRNWSKAIRILDSLLAQSY-EIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEE 121 (640)
Q Consensus 43 ~~~~~~~~~y~~Ai~~y~~ai~~~~-~~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~~~~ 121 (640)
+-++.+..+|..||.+.+--.+.+| +-..+..+|.||++..+|..|-..|++.=.+.|...+..+.-++.+.+.+.+.+
T Consensus 17 iy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~AD 96 (459)
T KOG4340|consen 17 VYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYAD 96 (459)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHH
Confidence 3456788899999999999999986 556689999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCChHHHHHHHhHHHHHHHHhhhccchhhhhhcccccccccccCCCCCCCcchhhhhcCCCCCccccc
Q 006562 122 ALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSS 201 (640)
Q Consensus 122 A~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (640)
|+.......+ ++.-+...+++......-..+
T Consensus 97 ALrV~~~~~D----~~~L~~~~lqLqaAIkYse~D--------------------------------------------- 127 (459)
T KOG4340|consen 97 ALRVAFLLLD----NPALHSRVLQLQAAIKYSEGD--------------------------------------------- 127 (459)
T ss_pred HHHHHHHhcC----CHHHHHHHHHHHHHHhccccc---------------------------------------------
Confidence 9988777622 111122222222111100000
Q ss_pred cCCccccccccCCCCCCCCcccccccccCCCcccccccccccCCccccccccCCCCCCCCccccccccchhhccccCCcc
Q 006562 202 SQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDF 281 (640)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (640)
T Consensus 128 -------------------------------------------------------------------------------- 127 (459)
T KOG4340|consen 128 -------------------------------------------------------------------------------- 127 (459)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCcccccccCCcccccccccccccccCccCCCCCCCCcccccccccCCCCCCchHHHHHhhHHHhhhhHHHHHH
Q 006562 282 DICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNE 361 (640)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 361 (640)
...+....+
T Consensus 128 --------------------------------------------------------l~g~rsLve--------------- 136 (459)
T KOG4340|consen 128 --------------------------------------------------------LPGSRSLVE--------------- 136 (459)
T ss_pred --------------------------------------------------------CcchHHHHH---------------
Confidence 000000000
Q ss_pred HHhhHHHHHhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 006562 362 AKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEA 441 (640)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 441 (640)
......+++.....|...++.|+|+.|++-|+.+++...-++-.-++++.++++.|+++.|+++..+.
T Consensus 137 ------------Qlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEI 204 (459)
T KOG4340|consen 137 ------------QLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEI 204 (459)
T ss_pred ------------hccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 00111335556677888889999999999999999988888888899999999999999998887777
Q ss_pred HHh----CCCc-------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHH
Q 006562 442 IQS----NPSA-------------------------GEAWKRRGQARAALGESVEAIQDLSKALEFEPN-----SADILH 487 (640)
Q Consensus 442 l~~----~p~~-------------------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~ 487 (640)
++. .|.. ..++...+-++++.++++.|.+.+.. +.|. ++..+.
T Consensus 205 ieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtD---mPPRaE~elDPvTLH 281 (459)
T KOG4340|consen 205 IERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTD---MPPRAEEELDPVTLH 281 (459)
T ss_pred HHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhc---CCCcccccCCchhhh
Confidence 643 3321 13455667788888888888766543 3332 234455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 006562 488 ERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAH 540 (640)
Q Consensus 488 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 540 (640)
+++..- ..+++.+...-+.-.+.++|--++.+-++-.+|.+..-|+-|...+
T Consensus 282 N~Al~n-~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvL 333 (459)
T KOG4340|consen 282 NQALMN-MDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVL 333 (459)
T ss_pred HHHHhc-ccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHH
Confidence 554433 2355666777777777778866777777777777776666665544
No 125
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=9.7e-12 Score=108.00 Aligned_cols=97 Identities=26% Similarity=0.347 Sum_probs=89.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHcccCchhH-HHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCH
Q 006562 41 IELAKLCSLRNWSKAIRILDSLLAQSYEIQD-ICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRK 119 (640)
Q Consensus 41 ~~~~~~~~~~~y~~Ai~~y~~ai~~~~~~~~-~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~~ 119 (640)
-++.++|..+.|..||++|.+||.++|+... |-|||.||+++++|+.+..+|.+|++++|+.+++++.+|.+.+....|
T Consensus 15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 15 EQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred hccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccc
Confidence 4556889999999999999999999988855 679999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCh
Q 006562 120 EEALSVWEKGYEHALHQS 137 (640)
Q Consensus 120 ~~A~~~~~~al~~~~~~~ 137 (640)
++|+.++.+|.++...++
T Consensus 95 ~eaI~~Lqra~sl~r~~~ 112 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQP 112 (284)
T ss_pred cHHHHHHHHHHHHHhcCC
Confidence 999999999988765553
No 126
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.26 E-value=1.4e-11 Score=94.63 Aligned_cols=80 Identities=30% Similarity=0.352 Sum_probs=72.6
Q ss_pred cCCHHHHHHHHHHHHcccC---chhHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 006562 49 LRNWSKAIRILDSLLAQSY---EIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSV 125 (640)
Q Consensus 49 ~~~y~~Ai~~y~~ai~~~~---~~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~~~~A~~~ 125 (640)
+|+|++|+.+|+++++..| +...++.+|.||+++|+|++|+..+++ ++.+|.++..++.+|.+|.++|++++|+..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 6899999999999999996 345578899999999999999999999 999999999999999999999999999999
Q ss_pred HHHH
Q 006562 126 WEKG 129 (640)
Q Consensus 126 ~~~a 129 (640)
|+++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 9875
No 127
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.25 E-value=3.2e-09 Score=98.92 Aligned_cols=84 Identities=18% Similarity=0.178 Sum_probs=61.7
Q ss_pred ccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HHHH
Q 006562 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEAL---IGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAW 452 (640)
Q Consensus 379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~---~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~ 452 (640)
.++..++..|..++..|+|++|+..|++++...|..+.+. +.+|.+++..+++++|+..+++.++.+|++ +.++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 3566677788888888888888888888888888765443 777888888888888888888888887765 3466
Q ss_pred HHHHHHHHHc
Q 006562 453 KRRGQARAAL 462 (640)
Q Consensus 453 ~~la~~~~~~ 462 (640)
+.+|.++...
T Consensus 110 Y~~g~~~~~~ 119 (243)
T PRK10866 110 YMRGLTNMAL 119 (243)
T ss_pred HHHHHhhhhc
Confidence 6667665433
No 128
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.24 E-value=1.2e-09 Score=98.34 Aligned_cols=266 Identities=15% Similarity=0.047 Sum_probs=153.1
Q ss_pred HHhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Q 006562 369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA 448 (640)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 448 (640)
++....+..|.+...+..+|.+|+...+|..|..+|++.-...|......+..+..+++.+.+..|+...........-.
T Consensus 32 ~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~ 111 (459)
T KOG4340|consen 32 LLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALH 111 (459)
T ss_pred HHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHH
Confidence 34444444554555555555555555555555555555555555555555555555555555555555544433221111
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 006562 449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALS 528 (640)
Q Consensus 449 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 528 (640)
..+...-+-+.+..+++..+....++.-. .+..+.....|.+.++.|+++.|++-|+.+++...-++..-++++.+++
T Consensus 112 ~~~lqLqaAIkYse~Dl~g~rsLveQlp~--en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy 189 (459)
T KOG4340|consen 112 SRVLQLQAAIKYSEGDLPGSRSLVEQLPS--ENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY 189 (459)
T ss_pred HHHHHHHHHHhcccccCcchHHHHHhccC--CCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH
Confidence 22233333444444444444433332110 1345667777888888888888888888888888777888888888888
Q ss_pred HcCCHHHHHHHHHHHHcc----Cccc-------------------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 006562 529 SIGEYKKAEEAHLKAIQL----DRNF-------------------------LEAWGHLTQFYQDLANSEKALECLQQVLY 579 (640)
Q Consensus 529 ~~g~~~~A~~~~~~a~~~----~~~~-------------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~ 579 (640)
+.|+++.|+++..+.++. .|+. .++++..+.++++.|+++.|.+.+...--
T Consensus 190 ~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPP 269 (459)
T KOG4340|consen 190 SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPP 269 (459)
T ss_pred hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCC
Confidence 888888888777666553 2321 23445566677788888777765543211
Q ss_pred hC--CCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCCccc
Q 006562 580 ID--KRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYRE 637 (640)
Q Consensus 580 ~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 637 (640)
.. .-+|..+.+++..- ..+++.+...-++-.+.++|--++..-++-.+|.+..-|+-
T Consensus 270 RaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~l 328 (459)
T KOG4340|consen 270 RAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDL 328 (459)
T ss_pred cccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhH
Confidence 10 02355566665443 23556666666666777777666777666666666554443
No 129
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.24 E-value=4.1e-11 Score=88.24 Aligned_cols=67 Identities=30% Similarity=0.335 Sum_probs=63.3
Q ss_pred chhHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhcc
Q 006562 68 EIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALG-RKEEALSVWEKGYEHAL 134 (640)
Q Consensus 68 ~~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g-~~~~A~~~~~~al~~~~ 134 (640)
++..|.++|.+++++|+|++|+..++++|+++|+++.+++.+|.+|..+| ++++|+..|+++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 46678999999999999999999999999999999999999999999999 79999999999987766
No 130
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.23 E-value=2.8e-10 Score=112.86 Aligned_cols=113 Identities=22% Similarity=0.284 Sum_probs=106.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 006562 384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG 463 (640)
Q Consensus 384 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 463 (640)
+...|..++..|+|++|+..|+++++.+|+++.+++.+|.++...|++++|+..+++++.++|.++.+++.+|.++..+|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 56678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 006562 464 ESVEAIQDLSKALEFEPNSADILHERGIVNFKF 496 (640)
Q Consensus 464 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 496 (640)
++++|+..|++++.++|++..+...++.+....
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999988888876555
No 131
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.22 E-value=1.2e-07 Score=94.52 Aligned_cols=190 Identities=14% Similarity=0.196 Sum_probs=124.4
Q ss_pred ccCHHHHHHHHHHHHH-hCCC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHhcC
Q 006562 428 QRELEAAISDFTEAIQ-SNPS-----AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS----ADILHERGIVNFKFK 497 (640)
Q Consensus 428 ~g~~~~A~~~~~~al~-~~p~-----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~ 497 (640)
.|+..+-+..|.++++ .+|. ....|..+|..|...|+.+.|...|+++.+..-.. ..+|...|..-+...
T Consensus 360 e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~ 439 (835)
T KOG2047|consen 360 EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHE 439 (835)
T ss_pred cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhh
Confidence 4556666666666654 3443 23567777788888888888888888877664322 456777777777777
Q ss_pred CHHHHHHHHHHHHHhCCC------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHH
Q 006562 498 DFNAAVEDLSACVKLDKE------------------NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ 559 (640)
Q Consensus 498 ~~~~A~~~~~~al~~~~~------------------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~ 559 (640)
+++.|+++.+.+...-.. ...+|..++......|-++.....|++.+.+---.|....+.|.
T Consensus 440 ~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAm 519 (835)
T KOG2047|consen 440 NFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAM 519 (835)
T ss_pred hHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 778887777777644211 12456666777777777777777777777776666777777777
Q ss_pred HHHHhcCHHHHHHHHHHHHHhCC--CChHHHHH---HHHHHHhcCCHHHHHHHHHHhhccCCC
Q 006562 560 FYQDLANSEKALECLQQVLYIDK--RFSKAYHL---RGLLLHGLGQHKKAIKDLSSGLGIDPS 617 (640)
Q Consensus 560 ~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~---la~~~~~~g~~~~A~~~~~~al~~~p~ 617 (640)
.+....-++++.+.|++.+.+.+ ...+.|.. ....-+.-...+.|...|+++++..|.
T Consensus 520 fLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp 582 (835)
T KOG2047|consen 520 FLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPP 582 (835)
T ss_pred HHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCH
Confidence 77777777788888877777653 33333332 222223334677788888888877663
No 132
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.22 E-value=3.5e-09 Score=96.43 Aligned_cols=174 Identities=21% Similarity=0.232 Sum_probs=116.7
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HHHHH
Q 006562 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAWK 453 (640)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~ 453 (640)
++..++..|..++..|+|.+|+..|++++...|.. +.+.+.+|.+++..|++..|+..+++.++..|++ +.+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 46788999999999999999999999999988875 6788999999999999999999999999999886 45788
Q ss_pred HHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 006562 454 RRGQARAALG-----------ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTY 522 (640)
Q Consensus 454 ~la~~~~~~~-----------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 522 (640)
.+|.+++... ...+|+..|+..+...|++..+-. |...+..+-. .-..--+.
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~--------------A~~~l~~l~~---~la~~e~~ 146 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEE--------------AKKRLAELRN---RLAEHELY 146 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHH--------------HHHHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHH--------------HHHHHHHHHH---HHHHHHHH
Confidence 8888776543 234778888888888887643211 1111111000 01122344
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHccCccc---HHHHHHHHHHHHHhcCHHHH
Q 006562 523 LGLALSSIGEYKKAEEAHLKAIQLDRNF---LEAWGHLTQFYQDLANSEKA 570 (640)
Q Consensus 523 la~~~~~~g~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A 570 (640)
+|..|...|.+..|+..++.+++..|+. ..++..++..|..+|..+.|
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 6667777777777777777777776665 34566667777777766643
No 133
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=1.7e-10 Score=105.40 Aligned_cols=98 Identities=26% Similarity=0.274 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHccc-Cchh----HHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHH
Q 006562 36 AITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQ----DICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKG 110 (640)
Q Consensus 36 ~~~~~~~~~~~~~~~~y~~Ai~~y~~ai~~~-~~~~----~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g 110 (640)
+.+-+-.+..+|+.++|..|+.+|+++|... +++. .|.|||.|.+.+|+|+.||.+|.+|++.+|++.+++++=+
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence 4555677889999999999999999999887 4443 3899999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhc
Q 006562 111 CAFSALGRKEEALSVWEKGYEHA 133 (640)
Q Consensus 111 ~~y~~~g~~~~A~~~~~~al~~~ 133 (640)
.+++.+.++.+|....+..+.+.
T Consensus 161 kc~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhh
Confidence 99999999999999998885543
No 134
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.17 E-value=6.3e-09 Score=94.72 Aligned_cols=175 Identities=21% Similarity=0.167 Sum_probs=126.9
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHH
Q 006562 414 YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA---DILH 487 (640)
Q Consensus 414 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~ 487 (640)
.+..++..|..++..|+|.+|+..|++++...|.. +.+.+.+|.+++..|++..|+..+++.++..|+++ .+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 46788889999999999999999999999888865 56888899999999999999999999999988774 5777
Q ss_pred HHHHHHHhcC-----------CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHH
Q 006562 488 ERGIVNFKFK-----------DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGH 556 (640)
Q Consensus 488 ~la~~~~~~~-----------~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 556 (640)
.+|.+++... ...+|+..|+..+...|++..+ .+|...+..+.. .-..--+.
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~--------------~~A~~~l~~l~~---~la~~e~~ 146 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYA--------------EEAKKRLAELRN---RLAEHELY 146 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTH--------------HHHHHHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHH--------------HHHHHHHHHHHH---HHHHHHHH
Confidence 7887766543 2346777777777777766422 222222222111 11333467
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHhcCCHHHHH
Q 006562 557 LTQFYQDLANSEKALECLQQVLYIDKRFS---KAYHLRGLLLHGLGQHKKAI 605 (640)
Q Consensus 557 la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~la~~~~~~g~~~~A~ 605 (640)
+|..|.+.|.+..|+..++.+++..|+.+ .++..++..|.++|..+.|.
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 89999999999999999999999999875 57889999999999988554
No 135
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.17 E-value=1.7e-08 Score=94.01 Aligned_cols=182 Identities=14% Similarity=0.072 Sum_probs=134.8
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHH
Q 006562 413 MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEA---WKRRGQARAALGESVEAIQDLSKALEFEPNS---ADIL 486 (640)
Q Consensus 413 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~ 486 (640)
..+..++..|..++..|++++|+..|++++...|..+.+ .+.+|.+++..+++++|+..+++.++.+|++ +.++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 357778889999999999999999999999999987654 4889999999999999999999999998877 4567
Q ss_pred HHHHHHHHhcC---------------C---HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCc
Q 006562 487 HERGIVNFKFK---------------D---FNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR 548 (640)
Q Consensus 487 ~~la~~~~~~~---------------~---~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 548 (640)
+.+|.++...+ + ..+|+..+++.++..|+...+ .+|...+..+- .
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya--------------~~A~~rl~~l~---~ 172 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYT--------------TDATKRLVFLK---D 172 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhH--------------HHHHHHHHHHH---H
Confidence 78887754433 1 246778888888888876432 12222111111 1
Q ss_pred ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 006562 549 NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF---SKAYHLRGLLLHGLGQHKKAIKDLSSG 611 (640)
Q Consensus 549 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~a 611 (640)
.-..--+..|..|.+.|.|..|+.-++.+++..|+. ++++..++..|..+|..++|.......
T Consensus 173 ~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 173 RLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 112233467888888888888888888888887754 467888888888888888888776543
No 136
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.16 E-value=3.8e-06 Score=84.12 Aligned_cols=241 Identities=15% Similarity=0.119 Sum_probs=183.8
Q ss_pred hhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHH-hCCC-----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 006562 371 TRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILK-EDPM-----YPEALIGRGTARAFQRELEAAISDFTEAIQS 444 (640)
Q Consensus 371 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~-~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 444 (640)
..++..+|.++..|.....+ ..|+..+-+..|.+++. .+|. ....|..+|..|...|+.+.|...|+++.+.
T Consensus 339 sVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V 416 (835)
T KOG2047|consen 339 SVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKV 416 (835)
T ss_pred HHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcC
Confidence 34567788888888876544 47888888888888876 3554 2467889999999999999999999999877
Q ss_pred CCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------------CHHHHHHHHHHHHhcCCHHHH
Q 006562 445 NPS----AGEAWKRRGQARAALGESVEAIQDLSKALEFEPN------------------SADILHERGIVNFKFKDFNAA 502 (640)
Q Consensus 445 ~p~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------------------~~~~~~~la~~~~~~~~~~~A 502 (640)
.-. -..+|...|..-....+++.|+.+.+++...... +..+|..++.+....|-++..
T Consensus 417 ~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfest 496 (835)
T KOG2047|consen 417 PYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFEST 496 (835)
T ss_pred CccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHH
Confidence 533 2568888888888889999999999988764321 134677778888888999999
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC--cccHHHHHHHHHH---HHHhcCHHHHHHHHHHH
Q 006562 503 VEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD--RNFLEAWGHLTQF---YQDLANSEKALECLQQV 577 (640)
Q Consensus 503 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~la~~---~~~~g~~~~A~~~~~~a 577 (640)
...|++.+.+---.|....+.|..+....-++++.+.|++.+.+. |.-.+.|...-.- -+.....+.|..+|+++
T Consensus 497 k~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqa 576 (835)
T KOG2047|consen 497 KAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQA 576 (835)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 999999999888888999999999999999999999999988876 4445555533222 22234688999999999
Q ss_pred HHhCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 006562 578 LYIDKRF--SKAYHLRGLLLHGLGQHKKAIKDLSSGLG 613 (640)
Q Consensus 578 l~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~ 613 (640)
++..|.. ...+...|.+-...|-...|+..|+++-.
T Consensus 577 L~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 577 LDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 9988732 23566667777777777777777777654
No 137
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=99.15 E-value=4.3e-09 Score=90.36 Aligned_cols=198 Identities=18% Similarity=0.135 Sum_probs=144.0
Q ss_pred ccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 006562 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQA 458 (640)
Q Consensus 379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 458 (640)
..+..++.+|..|-..|-+.-|.-.|.+++.+.|..+.++..+|..+...|+++.|.+.|+..++++|....+..+.|..
T Consensus 63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~ 142 (297)
T COG4785 63 ERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA 142 (297)
T ss_pred HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 006562 459 RAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEE 538 (640)
Q Consensus 459 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~ 538 (640)
++.-|++.-|.+.+.+-.+.+|++|.--..+-.. ...-+..+|...+.+-.+...+....|...+. .+|+.. -..
T Consensus 143 ~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~-E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~---yLgkiS-~e~ 217 (297)
T COG4785 143 LYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN-EQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEF---YLGKIS-EET 217 (297)
T ss_pred eeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH-HhhCCHHHHHHHHHHHHHhccHhhhhHHHHHH---HHhhcc-HHH
Confidence 9999999999999999999999887532222111 12335666665554433332222222222221 222221 122
Q ss_pred HHHHHHccCccc-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Q 006562 539 AHLKAIQLDRNF-------LEAWGHLTQFYQDLANSEKALECLQQVLYID 581 (640)
Q Consensus 539 ~~~~a~~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 581 (640)
.++++.....++ .++++.+|..+...|+.++|...|+-++..+
T Consensus 218 l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 218 LMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 333333332222 5677888888888888888888888887654
No 138
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.14 E-value=1.9e-08 Score=114.91 Aligned_cols=259 Identities=17% Similarity=0.072 Sum_probs=195.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc------H
Q 006562 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY-----PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA------G 449 (640)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~ 449 (640)
.......|..+...|++++|...+++++...+.. ..+...+|.++...|++++|...+.+++...... .
T Consensus 452 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~ 531 (903)
T PRK04841 452 AEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYAL 531 (903)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHH
Confidence 3455667888899999999999999999854442 2356778899999999999999999998764321 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-----c
Q 006562 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPN--------SADILHERGIVNFKFKDFNAAVEDLSACVKLDKE-----N 516 (640)
Q Consensus 450 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-----~ 516 (640)
.++..+|.++...|++++|...+++++..... ....+..+|.++...|++++|...+.+++..... .
T Consensus 532 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~ 611 (903)
T PRK04841 532 WSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQ 611 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHH
Confidence 35667899999999999999999999876321 1234567888999999999999999999876332 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccc---HHHHH----HHHHHHHHhcCHHHHHHHHHHHHHhCCCChH---
Q 006562 517 KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF---LEAWG----HLTQFYQDLANSEKALECLQQVLYIDKRFSK--- 586 (640)
Q Consensus 517 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~---~~~~~----~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--- 586 (640)
...+..+|.++...|++++|...+.++....+.. ..... .....+...|+.+.|...+.......+....
T Consensus 612 ~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 691 (903)
T PRK04841 612 LQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQ 691 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHH
Confidence 4556678999999999999999999987653321 11111 1224455678999999988776543322222
Q ss_pred -HHHHHHHHHHhcCCHHHHHHHHHHhhccCC------CCHHHHHHHHHHHHHcCCccccc
Q 006562 587 -AYHLRGLLLHGLGQHKKAIKDLSSGLGIDP------SNIECLYLRASCYHAIGEYREAV 639 (640)
Q Consensus 587 -~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~Al 639 (640)
.+..++.++...|++++|...+++++.... ....++..+|.++...|+.++|.
T Consensus 692 ~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~ 751 (903)
T PRK04841 692 GQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQ 751 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 256789999999999999999999987521 22357888999999999998874
No 139
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.09 E-value=3.5e-09 Score=87.94 Aligned_cols=105 Identities=24% Similarity=0.322 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HHHHHH
Q 006562 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAWKR 454 (640)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~ 454 (640)
++.++.+|..+...|++++|+..|.+++..+|++ +.+++.+|.++...|+++.|+.+|++++..+|++ +.++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 3456667777777777777777777777766654 4566777777777777777777777777766654 456667
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 006562 455 RGQARAALGESVEAIQDLSKALEFEPNSADI 485 (640)
Q Consensus 455 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 485 (640)
+|.++...|++++|+..+.+++...|++..+
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 7777777777777777777777777766543
No 140
>PRK11906 transcriptional regulator; Provisional
Probab=99.07 E-value=1.4e-08 Score=99.13 Aligned_cols=162 Identities=12% Similarity=0.084 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHcC---ChHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHhCCC
Q 006562 383 FRLSRGIAQVNEG---KYASAISIFDQIL---KEDPMYPEALIGRGTARAFQ---------RELEAAISDFTEAIQSNPS 447 (640)
Q Consensus 383 ~~~~~a~~~~~~g---~~~~A~~~~~~~l---~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~ 447 (640)
-++..|...+..+ ....|+.+|.+++ ..+|..+.++..++.|++.. .+..+|....+++++++|.
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~ 336 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV 336 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence 4477777776655 4568888999999 88999999999999998765 2456678888888888888
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH-
Q 006562 448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA- 526 (640)
Q Consensus 448 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~- 526 (640)
++.++..+|.+....++++.|...|++++.++|+.+.+++..|.+....|+.++|...++++++++|....+-...-.+
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~ 416 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVD 416 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHH
Confidence 8888888888888888888888888888888888888888888888888888888888888888888765444333333
Q ss_pred HHHcCCHHHHHHHHHHHH
Q 006562 527 LSSIGEYKKAEEAHLKAI 544 (640)
Q Consensus 527 ~~~~g~~~~A~~~~~~a~ 544 (640)
.+.....+.|+..|-+-.
T Consensus 417 ~~~~~~~~~~~~~~~~~~ 434 (458)
T PRK11906 417 MYVPNPLKNNIKLYYKET 434 (458)
T ss_pred HHcCCchhhhHHHHhhcc
Confidence 344456677777766543
No 141
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=99.06 E-value=8.6e-09 Score=88.55 Aligned_cols=214 Identities=18% Similarity=0.178 Sum_probs=155.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 006562 415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNF 494 (640)
Q Consensus 415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 494 (640)
+..++..|..|-..|-+.-|...|.+++.+.|+-++++..+|..+...|+|+.|.+.|...++++|....++.+.|..++
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y 144 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY 144 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee
Confidence 55677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH-HHHHccCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 006562 495 KFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAH-LKAIQLDRNFLEAWGHLTQFYQDLANSEKALEC 573 (640)
Q Consensus 495 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~-~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 573 (640)
.-|++.-|.+.+.+-...+|++|---.++=..- ..-++.+|...+ +++...+.+ ...|...+.. .|+..+ ...
T Consensus 145 Y~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E-~k~dP~~A~tnL~qR~~~~d~e-~WG~~iV~~y---LgkiS~-e~l 218 (297)
T COG4785 145 YGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE-QKLDPKQAKTNLKQRAEKSDKE-QWGWNIVEFY---LGKISE-ETL 218 (297)
T ss_pred ecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH-hhCCHHHHHHHHHHHHHhccHh-hhhHHHHHHH---HhhccH-HHH
Confidence 999999999999999999999984333322222 234566666544 444444322 2223222211 222211 123
Q ss_pred HHHHHHhCCC-------ChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCH----HHHHHHHHHHHHcCC
Q 006562 574 LQQVLYIDKR-------FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI----ECLYLRASCYHAIGE 634 (640)
Q Consensus 574 ~~~al~~~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~ 634 (640)
++++.....+ -.++++.+|..+...|+.++|...|+-++..+--+. -+.+.++.+.....+
T Consensus 219 ~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannVynfVE~RyA~~EL~~l~q~~~~ 290 (297)
T COG4785 219 MERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNVYNFVEHRYALLELSLLGQDQDD 290 (297)
T ss_pred HHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccccch
Confidence 3333332222 246799999999999999999999999987654332 344445555444433
No 142
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.06 E-value=7.8e-10 Score=80.15 Aligned_cols=65 Identities=26% Similarity=0.281 Sum_probs=59.3
Q ss_pred HhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCh
Q 006562 73 CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQS 137 (640)
Q Consensus 73 ~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~~~~A~~~~~~al~~~~~~~ 137 (640)
+.+|..+++.|+|++|+..++++++.+|+++++++.+|.++..+|++++|+..|+++++++|++|
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 46899999999999999999999999999999999999999999999999999999988888764
No 143
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=99.05 E-value=2.5e-10 Score=110.35 Aligned_cols=112 Identities=23% Similarity=0.286 Sum_probs=103.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHcccCch-hHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCH
Q 006562 41 IELAKLCSLRNWSKAIRILDSLLAQSYEI-QDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRK 119 (640)
Q Consensus 41 ~~~~~~~~~~~y~~Ai~~y~~ai~~~~~~-~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~~ 119 (640)
-++..+|..++|+.|+..|+|||+++||. ..+.+||.++++.++|..|+.|+.+||+.+|...++|+++|.+...++++
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence 45668899999999999999999999755 45789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCChHHHHHHHhHHHHHHH
Q 006562 120 EEALSVWEKGYEHALHQSADLKQFLELEELLTA 152 (640)
Q Consensus 120 ~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~~ 152 (640)
.+|...|++...+.|+.+.....+.+++.....
T Consensus 89 ~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~ 121 (476)
T KOG0376|consen 89 KKALLDLEKVKKLAPNDPDATRKIDECNKIVSE 121 (476)
T ss_pred HHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHH
Confidence 999999999999999999998888887766554
No 144
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=7.7e-09 Score=94.97 Aligned_cols=120 Identities=26% Similarity=0.316 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC---CHHHHHHHHH
Q 006562 431 LEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFK---DFNAAVEDLS 507 (640)
Q Consensus 431 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~ 507 (640)
.+.-+.-++..+..+|++.+.|..+|.+|+..|++..|...|.+++++.|++++.+..+|.+++... ...++...++
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 3444444555555666666666666666666666666666666666666666666666665555433 2445556666
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccc
Q 006562 508 ACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF 550 (640)
Q Consensus 508 ~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 550 (640)
+++..+|.+..+.+.+|..++..|+|.+|...++..+...|.+
T Consensus 218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 6666666666666666666666666666666666666555443
No 145
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.05 E-value=1.1e-08 Score=90.78 Aligned_cols=121 Identities=22% Similarity=0.271 Sum_probs=83.6
Q ss_pred cCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHH
Q 006562 376 SKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAW 452 (640)
Q Consensus 376 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 452 (640)
..+..+..++.+|..+...|++++|+.+|++++...|+. +.++..+|.++...|++++|+..+.+++...|.+...+
T Consensus 30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 109 (172)
T PRK02603 30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSAL 109 (172)
T ss_pred cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHH
Confidence 344556677778888888888888888888887765543 35677777777777777777777777777777777777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 006562 453 KRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN 516 (640)
Q Consensus 453 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 516 (640)
..+|.++...|+...+...+..++. .+++|++++++++..+|++
T Consensus 110 ~~lg~~~~~~g~~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 110 NNIAVIYHKRGEKAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHHcCChHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhhCchh
Confidence 7777777777776665554444432 2456666666666666654
No 146
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.05 E-value=6.9e-09 Score=86.13 Aligned_cols=104 Identities=21% Similarity=0.202 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHH
Q 006562 416 EALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAWKRRGQARAALGESVEAIQDLSKALEFEPNS---ADILHER 489 (640)
Q Consensus 416 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l 489 (640)
..++.+|..+...|++++|+..|.+++..+|++ +.+++.+|.++...|++++|+..|++++...|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 456667777777777777777777777766654 4566667777777777777777777777766654 4566677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCcHHH
Q 006562 490 GIVNFKFKDFNAAVEDLSACVKLDKENKSA 519 (640)
Q Consensus 490 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 519 (640)
|.++...|++++|+..+++++...|++..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 777777777777777777777777766543
No 147
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=99.04 E-value=1e-06 Score=83.50 Aligned_cols=224 Identities=29% Similarity=0.351 Sum_probs=184.2
Q ss_pred cCChHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHH
Q 006562 394 EGKYASAISIFDQILKEDPM--YPEALIGRGTARAFQRELEAAISDFTEAIQ--SNPSAGEAWKRRGQARAALGESVEAI 469 (640)
Q Consensus 394 ~g~~~~A~~~~~~~l~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~A~ 469 (640)
.+.+..+...+...+...+. ........+..+...+++..+...+...+. ..+.....+...+..+...+++..++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 46677777788877777766 367788888888888889988888888887 67777888888888888888899999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHhCC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 006562 470 QDLSKALEFEPNSADILHERGI-VNFKFKDFNAAVEDLSACVKLDK---ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ 545 (640)
Q Consensus 470 ~~~~~al~~~p~~~~~~~~la~-~~~~~~~~~~A~~~~~~al~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 545 (640)
..+..++...+.........+. ++...|+++.|...+.+++...| .........+..+...++++.|+..+.+++.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 9999988887776555555566 78889999999999999888666 3456666667777888899999999999998
Q ss_pred cCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCC
Q 006562 546 LDRN-FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS 617 (640)
Q Consensus 546 ~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 617 (640)
..+. ....+..++..+...++++.|+..+..++...|.....+..++..+...+.++.+...+.+++...|.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 8888 68888889999999999999999999999888887777777787777777799999999999888886
No 148
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.03 E-value=1.9e-08 Score=103.91 Aligned_cols=141 Identities=18% Similarity=0.144 Sum_probs=81.2
Q ss_pred cCcccHH--HHHHHHHHHHHcCC---hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC--------HHHHHHHHHHHH
Q 006562 376 SKSISVD--FRLSRGIAQVNEGK---YASAISIFDQILKEDPMYPEALIGRGTARAFQRE--------LEAAISDFTEAI 442 (640)
Q Consensus 376 ~~~~~~~--~~~~~a~~~~~~g~---~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~--------~~~A~~~~~~al 442 (640)
..|.++. -++..|..++..++ +..|+.+|+++++.+|+++.++..++.++..... ...+.....+++
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 3444443 44667777766554 7788888888888888888888877777654321 223333334433
Q ss_pred Hh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcH
Q 006562 443 QS--NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK 517 (640)
Q Consensus 443 ~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 517 (640)
.. +|.++.++..+|..+...|++++|...+++++.++| +..+|..+|.++...|++++|+..|++++.++|.++
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 32 344445555555555555555555555555555555 344555555555555555555555555555555544
No 149
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=1.1e-08 Score=93.91 Aligned_cols=121 Identities=17% Similarity=0.141 Sum_probs=106.4
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC---CHHHHHHHHH
Q 006562 397 YASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG---ESVEAIQDLS 473 (640)
Q Consensus 397 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~ 473 (640)
.+.-+.-++.-+..+|++++.|..+|.+|+..|++..|...|.+++++.|++++.+..+|.+++... ...++...++
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 5566667778888899999999999999999999999999999999999999999999998877654 4578899999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcH
Q 006562 474 KALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK 517 (640)
Q Consensus 474 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 517 (640)
+++..+|.+..+.+.+|..++..|+|.+|...++..+...|.+.
T Consensus 218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 99999999999999999999999999999999999999887653
No 150
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.02 E-value=2.3e-08 Score=88.79 Aligned_cols=115 Identities=17% Similarity=0.230 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHH
Q 006562 484 DILHERGIVNFKFKDFNAAVEDLSACVKLDKEN---KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQF 560 (640)
Q Consensus 484 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 560 (640)
..++.+|..+...|++++|+.++++++...|+. ..++..+|.++...|++++|+..+.+++...|.+...+..+|.+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 344555555555555555555555555544332 24555555555555555555555555555555555555555555
Q ss_pred HHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCC
Q 006562 561 YQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN 618 (640)
Q Consensus 561 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 618 (640)
+...|+...+...+..++. .+++|++.+++++..+|++
T Consensus 116 ~~~~g~~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 116 YHKRGEKAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHcCChHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhhCchh
Confidence 5555555544444333321 1455566666666666554
No 151
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.01 E-value=2.5e-08 Score=85.58 Aligned_cols=124 Identities=19% Similarity=0.167 Sum_probs=79.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HHHHHHHHHH
Q 006562 385 LSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAWKRRGQA 458 (640)
Q Consensus 385 ~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~ 458 (640)
+..+...+..++...+...++.++..+|+. ..+.+.+|.+++..|++++|...|+.++...|+. +.+...+|.+
T Consensus 15 y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~ 94 (145)
T PF09976_consen 15 YEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARI 94 (145)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHH
Confidence 344444455677777777777777777766 4556667777777777777777777777765543 3356667777
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006562 459 RAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509 (640)
Q Consensus 459 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 509 (640)
+...|++++|+..++. +...+..+.++..+|.++...|++++|+..|+++
T Consensus 95 ~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 95 LLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 7777777777777654 2223333456666677777777777777766665
No 152
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=9e-09 Score=90.07 Aligned_cols=110 Identities=19% Similarity=0.159 Sum_probs=94.8
Q ss_pred hhHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHccc--------Cch-----------hHHHhHHHHHHhhhcHHHHHH
Q 006562 30 DSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQS--------YEI-----------QDICNRAFCYSQLELHKHVIR 90 (640)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~y~~Ai~~y~~ai~~~--------~~~-----------~~~~~~A~~~~~~g~~~~Ai~ 90 (640)
+..|-+...-+.++..+|+.|+|++|+..|..||..- |.. ..+.|-++|++..|+|-+++.
T Consensus 172 deKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevle 251 (329)
T KOG0545|consen 172 DEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLE 251 (329)
T ss_pred hHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHH
Confidence 4566666777888999999999999999999996321 222 225799999999999999999
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHH
Q 006562 91 DCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSAD 139 (640)
Q Consensus 91 ~~~~al~~~P~~~~a~~~~g~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 139 (640)
.|..+|..+|.+++||+++|.++...=+.++|...|.++|+++|+-...
T Consensus 252 h~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 252 HCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence 9999999999999999999999999999999999999998888765433
No 153
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.99 E-value=1.7e-08 Score=89.37 Aligned_cols=98 Identities=16% Similarity=0.165 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHH
Q 006562 465 SVEAIQDLSKALEFEPNS--ADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN---KSAYTYLGLALSSIGEYKKAEEA 539 (640)
Q Consensus 465 ~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~ 539 (640)
+..+...+...++..+.+ ...++.+|.++...|++++|+..|++++.+.|+. +.++..+|.++...|++++|+..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 334444443333333332 3344555555555555555555555555544332 23455555555555555555555
Q ss_pred HHHHHccCcccHHHHHHHHHHHH
Q 006562 540 HLKAIQLDRNFLEAWGHLTQFYQ 562 (640)
Q Consensus 540 ~~~a~~~~~~~~~~~~~la~~~~ 562 (640)
+++++...|.....+..+|.++.
T Consensus 95 ~~~Al~~~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 95 YFQALERNPFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHhCcCcHHHHHHHHHHHH
Confidence 55555555555555555555554
No 154
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.98 E-value=3.2e-08 Score=95.36 Aligned_cols=195 Identities=15% Similarity=0.120 Sum_probs=114.4
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCC--C----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHH
Q 006562 422 GTARAFQRELEAAISDFTEAIQSNP--S----AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS------ADILHER 489 (640)
Q Consensus 422 a~~~~~~g~~~~A~~~~~~al~~~p--~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l 489 (640)
|.+|...|++++|...|.++....- + -...+...+.++... ++++|+.++++++.+.-.. ...+..+
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~l 120 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKEL 120 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3444444455555555544433211 0 122334444444443 6666666666666552211 3456777
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccc-------HHHHH
Q 006562 490 GIVNFKF-KDFNAAVEDLSACVKLDKEN------KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF-------LEAWG 555 (640)
Q Consensus 490 a~~~~~~-~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-------~~~~~ 555 (640)
|.+|... |++++|+++|++++...... ...+..+|.++...|+|++|+..|++.....-++ ...++
T Consensus 121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l 200 (282)
T PF14938_consen 121 AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFL 200 (282)
T ss_dssp HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHH
Confidence 8888887 88888888888888763211 3556678888888888888888888877643211 23455
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCCh---H--HHHHHHHHHH--hcCCHHHHHHHHHHhhccCCC
Q 006562 556 HLTQFYQDLANSEKALECLQQVLYIDKRFS---K--AYHLRGLLLH--GLGQHKKAIKDLSSGLGIDPS 617 (640)
Q Consensus 556 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~--~~~~la~~~~--~~g~~~~A~~~~~~al~~~p~ 617 (640)
..+.+++..||+..|...+++....+|... + ....+-.++. ....+.+|+..|....+++|-
T Consensus 201 ~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w 269 (282)
T PF14938_consen 201 KAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNW 269 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---HH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHHH
Confidence 677788888888889888888888877432 2 2333333333 244678888888877666654
No 155
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=3.2e-07 Score=81.95 Aligned_cols=162 Identities=15% Similarity=0.061 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-
Q 006562 451 AWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS- 529 (640)
Q Consensus 451 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~- 529 (640)
....-|.++..-|++++|+...... .+.++...-..++.++.+.+-|...++++...+.+ ..+..+|..+..
T Consensus 110 ~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided--~tLtQLA~awv~l 182 (299)
T KOG3081|consen 110 DLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDED--ATLTQLAQAWVKL 182 (299)
T ss_pred HHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH--HHHHHHHHHHHHH
Confidence 3444556777777777777776652 23455555566777777777777777777766543 333334444433
Q ss_pred ---cCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHH-
Q 006562 530 ---IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAI- 605 (640)
Q Consensus 530 ---~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~- 605 (640)
.+++.+|.-+|++.-...|..+......+.+++.+|++++|...++.++..++++++++.++..+-...|...++.
T Consensus 183 a~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~ 262 (299)
T KOG3081|consen 183 ATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTE 262 (299)
T ss_pred hccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHH
Confidence 2456777777777777666677777777788888888888888888888777777887777777777777665544
Q ss_pred HHHHHhhccCCCCH
Q 006562 606 KDLSSGLGIDPSNI 619 (640)
Q Consensus 606 ~~~~~al~~~p~~~ 619 (640)
+++.+....+|+.+
T Consensus 263 r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 263 RNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHHhcCCcch
Confidence 34455555666655
No 156
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.98 E-value=3.9e-08 Score=84.42 Aligned_cols=117 Identities=21% Similarity=0.094 Sum_probs=72.4
Q ss_pred hcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccc---HHHHHHHHHHHHHhcCHH
Q 006562 495 KFKDFNAAVEDLSACVKLDKEN---KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF---LEAWGHLTQFYQDLANSE 568 (640)
Q Consensus 495 ~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~ 568 (640)
..++...+...++..+..+|+. ..+.+.+|.+++..|++++|...|+.++...|+. +.+.+.++.++...|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 4556666666666666666665 3455556666666666666666666666655433 345566666677777777
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 006562 569 KALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGL 612 (640)
Q Consensus 569 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 612 (640)
+|+..++.. ...+-.+.++..+|.++...|++++|+..|++++
T Consensus 103 ~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 103 EALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 776666542 2233345566666777777777777777766653
No 157
>PRK11906 transcriptional regulator; Provisional
Probab=98.98 E-value=5.7e-08 Score=94.94 Aligned_cols=132 Identities=14% Similarity=0.083 Sum_probs=66.7
Q ss_pred HHHHHHHHHcc---CHHHHHHHHHHHH---HhCCCcHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCH
Q 006562 419 IGRGTARAFQR---ELEAAISDFTEAI---QSNPSAGEAWKRRGQARAAL---------GESVEAIQDLSKALEFEPNSA 483 (640)
Q Consensus 419 ~~la~~~~~~g---~~~~A~~~~~~al---~~~p~~~~~~~~la~~~~~~---------~~~~~A~~~~~~al~~~p~~~ 483 (640)
+..|......+ ..+.|+.+|.+++ ..+|..+.+|..++.+++.. ....+|....+++++++|.++
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da 338 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG 338 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH
Confidence 44444444333 2344555666666 56666666666666555433 122344444445555555555
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccc
Q 006562 484 DILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF 550 (640)
Q Consensus 484 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 550 (640)
.++..+|.++...++++.|...|++++.++|+.+.+++..|.+....|+.++|...++++++++|.-
T Consensus 339 ~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~ 405 (458)
T PRK11906 339 KILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRR 405 (458)
T ss_pred HHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchh
Confidence 5555555555555555555555555555555555555555555555555555555555555555443
No 158
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.97 E-value=4e-09 Score=77.54 Aligned_cols=65 Identities=38% Similarity=0.516 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 006562 416 EALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG-ESVEAIQDLSKALEFEP 480 (640)
Q Consensus 416 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p 480 (640)
..|..+|.+++..|++++|+.+|.++++.+|+++.+++.+|.++..+| ++.+|+..++++++++|
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 344444444444444444444444444444444444444444444444 34444444444444443
No 159
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.97 E-value=2.4e-07 Score=100.05 Aligned_cols=234 Identities=12% Similarity=0.062 Sum_probs=190.3
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCc----HHHHHHHHHHHHHcCCHHHHHH
Q 006562 396 KYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS-NPSA----GEAWKRRGQARAALGESVEAIQ 470 (640)
Q Consensus 396 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~----~~~~~~la~~~~~~~~~~~A~~ 470 (640)
+-.+..+.|++.+..+|+....|...-..+...++.++|.+.+++++.. ++.. -.+|..+-++...-|.-+.-.+
T Consensus 1439 ~~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~k 1518 (1710)
T KOG1070|consen 1439 RAPESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKK 1518 (1710)
T ss_pred cCCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHH
Confidence 3445567788888889999999988888888999999999999999864 3322 2455555556666677777888
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcc-
Q 006562 471 DLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN- 549 (640)
Q Consensus 471 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~- 549 (640)
.|++|.+... ...++..|..+|...+.+++|.++++..++...+....|..++..++..++-+.|...+.+|+..-|.
T Consensus 1519 VFeRAcqycd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~ 1597 (1710)
T KOG1070|consen 1519 VFERACQYCD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQ 1597 (1710)
T ss_pred HHHHHHHhcc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchh
Confidence 8888887753 34678888999999999999999999999988888899999999999999999999999999998887
Q ss_pred -cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhcc--CCCCHHHHHHHH
Q 006562 550 -FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI--DPSNIECLYLRA 626 (640)
Q Consensus 550 -~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la 626 (640)
+.......|.+.++.|+.+.+..+|+..+..+|...+.|.-+...-.+.|+.+.+...|++++.+ .|......+..-
T Consensus 1598 eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkw 1677 (1710)
T KOG1070|consen 1598 EHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKW 1677 (1710)
T ss_pred hhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHH
Confidence 67788888999999999999999999999999999999999999999999999999999999865 344444444443
Q ss_pred HHHH
Q 006562 627 SCYH 630 (640)
Q Consensus 627 ~~~~ 630 (640)
.-|.
T Consensus 1678 LeyE 1681 (1710)
T KOG1070|consen 1678 LEYE 1681 (1710)
T ss_pred HHHH
Confidence 3343
No 160
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.97 E-value=1e-08 Score=81.23 Aligned_cols=97 Identities=32% Similarity=0.428 Sum_probs=57.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcC
Q 006562 520 YTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG 599 (640)
Q Consensus 520 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g 599 (640)
++.+|.++...|++++|+..+.+++...|.++.++..+|.++...|++++|+..+++++...|.+..++..+|.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 44555555555555666666655555555555555556666666666666666666665555555555566666666666
Q ss_pred CHHHHHHHHHHhhccCC
Q 006562 600 QHKKAIKDLSSGLGIDP 616 (640)
Q Consensus 600 ~~~~A~~~~~~al~~~p 616 (640)
++++|...+.+++...|
T Consensus 83 ~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 83 KYEEALEAYEKALELDP 99 (100)
T ss_pred hHHHHHHHHHHHHccCC
Confidence 66666666666555544
No 161
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.97 E-value=3.7e-08 Score=101.78 Aligned_cols=142 Identities=15% Similarity=0.109 Sum_probs=80.5
Q ss_pred HhCCCCHHHH--HHHHHHHHHccC---HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC--------HHHHHHHHHHH
Q 006562 409 KEDPMYPEAL--IGRGTARAFQRE---LEAAISDFTEAIQSNPSAGEAWKRRGQARAALGE--------SVEAIQDLSKA 475 (640)
Q Consensus 409 ~~~~~~~~~~--~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~--------~~~A~~~~~~a 475 (640)
...|.++.+| +..|.-+...++ ...|+.+|+++++.+|+++.++..++.++..... ...+.....++
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 3445555544 555666655443 7789999999999999998888888777654321 22333333333
Q ss_pred HHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccH
Q 006562 476 LEF--EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL 551 (640)
Q Consensus 476 l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 551 (640)
+.. +|.++.++..+|..+...|++++|...+++++.++| +..+|..+|.++...|++++|+..|++++.++|..+
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 332 334444455555555555555555555555555555 244555555555555555555555555555555544
No 162
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.97 E-value=1.1e-08 Score=80.89 Aligned_cols=97 Identities=28% Similarity=0.414 Sum_probs=56.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 006562 384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG 463 (640)
Q Consensus 384 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 463 (640)
++.+|..++..|++++|+..++++++..|.++.++..+|.++...|++++|+..+++++...|.+..++..+|.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 44455555555666666666666655555555555555666655555666666665555555555555555555555555
Q ss_pred CHHHHHHHHHHHHHhCC
Q 006562 464 ESVEAIQDLSKALEFEP 480 (640)
Q Consensus 464 ~~~~A~~~~~~al~~~p 480 (640)
+++.|...+.+++...|
T Consensus 83 ~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 83 KYEEALEAYEKALELDP 99 (100)
T ss_pred hHHHHHHHHHHHHccCC
Confidence 55555555555555444
No 163
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.95 E-value=1.3e-06 Score=82.87 Aligned_cols=204 Identities=27% Similarity=0.341 Sum_probs=182.7
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 006562 380 SVDFRLSRGIAQVNEGKYASAISIFDQILK--EDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQ 457 (640)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 457 (640)
........+..+...+++..+...+..... ..+.....+...+..+...+++..++..+..++...+.........+.
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (291)
T COG0457 58 LAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLAL 137 (291)
T ss_pred chHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHH
Confidence 467778889999999999999999999997 688888999999999999999999999999999988877666666666
Q ss_pred -HHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCC
Q 006562 458 -ARAALGESVEAIQDLSKALEFEP---NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE-NKSAYTYLGLALSSIGE 532 (640)
Q Consensus 458 -~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~ 532 (640)
++...|+++.|...+.+++...| .........+..+...++++.++..+.+++...+. ....+..++..+...++
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 89999999999999999988776 34556667777788999999999999999999999 69999999999999999
Q ss_pred HHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Q 006562 533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKR 583 (640)
Q Consensus 533 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 583 (640)
+..|...+..++...|.....+..++..+...+.++.+...+.+++...|.
T Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 999999999999999987778888888888778899999999999999887
No 164
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.95 E-value=2.6e-08 Score=88.05 Aligned_cols=100 Identities=17% Similarity=0.194 Sum_probs=64.3
Q ss_pred CChHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHH
Q 006562 395 GKYASAISIFDQILKEDPMY--PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAWKRRGQARAALGESVEAI 469 (640)
Q Consensus 395 g~~~~A~~~~~~~l~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~ 469 (640)
..|..+...+...++.++.. ...++.+|.++...|++++|+..|++++...|+. +.++..+|.++...|++++|+
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~ 92 (168)
T CHL00033 13 KTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKAL 92 (168)
T ss_pred cccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHH
Confidence 33455555554444444433 4556677777777777777777777777665542 346677777777777777777
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHH
Q 006562 470 QDLSKALEFEPNSADILHERGIVNF 494 (640)
Q Consensus 470 ~~~~~al~~~p~~~~~~~~la~~~~ 494 (640)
..+++++.+.|.....+..+|.++.
T Consensus 93 ~~~~~Al~~~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 93 EYYFQALERNPFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 7777777777776666666666666
No 165
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.93 E-value=3.3e-09 Score=81.31 Aligned_cols=81 Identities=27% Similarity=0.369 Sum_probs=50.8
Q ss_pred cCChHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 006562 394 EGKYASAISIFDQILKEDPM--YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQD 471 (640)
Q Consensus 394 ~g~~~~A~~~~~~~l~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~ 471 (640)
+|+|+.|+.+++++++.+|. +...++.+|.+++..|++++|+..+++ .+.+|.+....+.+|.++..+|++++|+..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46666666666666666663 344555566666666666666666666 555566666666666666666666666666
Q ss_pred HHHH
Q 006562 472 LSKA 475 (640)
Q Consensus 472 ~~~a 475 (640)
++++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 6553
No 166
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.92 E-value=1.5e-09 Score=99.52 Aligned_cols=230 Identities=17% Similarity=0.097 Sum_probs=175.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 006562 384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG 463 (640)
Q Consensus 384 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 463 (640)
+-..|..|+.+|.|++|+.+|.+++..+|.++..+.+.|.+|+....+..|...+..++.++.....+|...+..-..+|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 44679999999999999999999999999999999999999999999999999999999999888999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHH---------HHHHHHHHHHcCCHH
Q 006562 464 ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSA---------YTYLGLALSSIGEYK 534 (640)
Q Consensus 464 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~---------~~~la~~~~~~g~~~ 534 (640)
...+|.+.++.++++.|++.+....++.+-. ..++ +-+.+..|....+ .-.-|..+...|.+.
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S----l~E~----~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~ 251 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELKKSLARINS----LRER----KIATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRS 251 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHHHHHHHhcc----hHhh----hHHhhcCCCCCccccchhhhccccCcchhhhhhhccc
Confidence 9999999999999999998776655554432 1111 1111112221111 112366667778888
Q ss_pred HHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhcc
Q 006562 535 KAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI 614 (640)
Q Consensus 535 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 614 (640)
.++.++.+-+..+..+.....+ +..+.+.-+++.++.-..+++..+|.........+.+-.-.|...++...++.++.+
T Consensus 252 ~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~ 330 (536)
T KOG4648|consen 252 VPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKV 330 (536)
T ss_pred cceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcCcchhheeee
Confidence 8888877766555444333333 666777778889988888888887766655556666666677788888899999988
Q ss_pred CCCCHHHH
Q 006562 615 DPSNIECL 622 (640)
Q Consensus 615 ~p~~~~~~ 622 (640)
.|.+....
T Consensus 331 ~P~~~~~~ 338 (536)
T KOG4648|consen 331 APAVETPK 338 (536)
T ss_pred ccccccch
Confidence 88765433
No 167
>PRK15331 chaperone protein SicA; Provisional
Probab=98.92 E-value=3.8e-08 Score=82.41 Aligned_cols=113 Identities=13% Similarity=0.111 Sum_probs=99.9
Q ss_pred HhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH
Q 006562 370 VTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG 449 (640)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 449 (640)
+..+....+...+..+..|..++..|++++|..+|+-+...+|.++..++.+|.|+..+++|++|+..|..+...+++++
T Consensus 26 lk~l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp 105 (165)
T PRK15331 26 LKDVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDY 105 (165)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCC
Confidence 34445566667788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 006562 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSA 483 (640)
Q Consensus 450 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 483 (640)
...+..|.|+..+|+...|...|..++. .|.+.
T Consensus 106 ~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~ 138 (165)
T PRK15331 106 RPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDE 138 (165)
T ss_pred CccchHHHHHHHhCCHHHHHHHHHHHHh-CcchH
Confidence 9999999999999999999999999988 45443
No 168
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.90 E-value=1.4e-07 Score=87.53 Aligned_cols=234 Identities=15% Similarity=0.189 Sum_probs=178.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------cHHH
Q 006562 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPS------AGEA 451 (640)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~ 451 (640)
+...+..|.-++...++.+|+..+.+.+..-.+. ...+-.+..+...+|.|++++.+.-..+....+ .-++
T Consensus 6 ~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea 85 (518)
T KOG1941|consen 6 TKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEA 85 (518)
T ss_pred hHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677888899999999999999888754332 234445667788888888877765444433221 1357
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc------HHHH
Q 006562 452 WKRRGQARAALGESVEAIQDLSKALEFEPNSA-----DILHERGIVNFKFKDFNAAVEDLSACVKLDKEN------KSAY 520 (640)
Q Consensus 452 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~ 520 (640)
+..+++.+....++.+++.+-+..+.+....+ .....++..+..++.++++++.|+.+++...++ -.++
T Consensus 86 ~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvc 165 (518)
T KOG1941|consen 86 YLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVC 165 (518)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehh
Confidence 88889999999999999998888887654332 466778999999999999999999998875433 2567
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCccc----------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------CCC
Q 006562 521 TYLGLALSSIGEYKKAEEAHLKAIQLDRNF----------LEAWGHLTQFYQDLANSEKALECLQQVLYID------KRF 584 (640)
Q Consensus 521 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------~~~ 584 (640)
..+|..+....++++|.-+..++.++-... ..+.+.++..+..+|..-.|.++.+++.++. +-.
T Consensus 166 v~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~ 245 (518)
T KOG1941|consen 166 VSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQ 245 (518)
T ss_pred hhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHH
Confidence 889999999999999999988888763221 3466788888999999999999999887653 233
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHhhcc
Q 006562 585 SKAYHLRGLLLHGLGQHKKAIKDLSSGLGI 614 (640)
Q Consensus 585 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 614 (640)
......+|.+|...|+.+.|..-|+.+...
T Consensus 246 arc~~~~aDIyR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 246 ARCLLCFADIYRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 456778899999999999999999988754
No 169
>PRK15331 chaperone protein SicA; Provisional
Probab=98.89 E-value=4.1e-08 Score=82.18 Aligned_cols=96 Identities=13% Similarity=-0.069 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh
Q 006562 518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG 597 (640)
Q Consensus 518 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 597 (640)
+..+..|.-++..|++++|...|+-....+|.++..|..||.++..+++|++|+..|..+..+++++|...+..|.++..
T Consensus 38 e~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~ 117 (165)
T PRK15331 38 DGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLL 117 (165)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHH
Confidence 34444455555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred cCCHHHHHHHHHHhhc
Q 006562 598 LGQHKKAIKDLSSGLG 613 (640)
Q Consensus 598 ~g~~~~A~~~~~~al~ 613 (640)
+|+.+.|+..|+.++.
T Consensus 118 l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 118 MRKAAKARQCFELVNE 133 (165)
T ss_pred hCCHHHHHHHHHHHHh
Confidence 5555555555555544
No 170
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.88 E-value=6.9e-09 Score=75.14 Aligned_cols=63 Identities=30% Similarity=0.433 Sum_probs=35.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Q 006562 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA 448 (640)
Q Consensus 386 ~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 448 (640)
.+|..++..|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 345555555555555555555555555555555555555555555555555555555555554
No 171
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.88 E-value=9.5e-08 Score=89.57 Aligned_cols=105 Identities=17% Similarity=0.224 Sum_probs=91.3
Q ss_pred HHHHHHHHHHH-HHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HHHHH
Q 006562 381 VDFRLSRGIAQ-VNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAWK 453 (640)
Q Consensus 381 ~~~~~~~a~~~-~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~ 453 (640)
....+..|..+ +..|+|++|+..|+..++.+|++ +.+++.+|.+|+..|++++|+..|.++++.+|++ +++++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 45566777765 56799999999999999999987 5799999999999999999999999999888874 67888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 006562 454 RRGQARAALGESVEAIQDLSKALEFEPNSADI 485 (640)
Q Consensus 454 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 485 (640)
.+|.++...|++++|...|+++++..|+...+
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 89999999999999999999999999987654
No 172
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.86 E-value=9.8e-07 Score=79.46 Aligned_cols=190 Identities=15% Similarity=0.155 Sum_probs=128.3
Q ss_pred cccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH---HH
Q 006562 378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG---EA 451 (640)
Q Consensus 378 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~ 451 (640)
...+..++..|...+..|+|.+|+..|+.+....|.. ..+.+.++.++++.++++.|+..+++-+...|.++ .+
T Consensus 31 ~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~ 110 (254)
T COG4105 31 NLPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYA 110 (254)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHH
Confidence 3457889999999999999999999999999988775 57889999999999999999999999999998875 46
Q ss_pred HHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 006562 452 WKRRGQARAAL--------GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYL 523 (640)
Q Consensus 452 ~~~la~~~~~~--------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l 523 (640)
++..|.+++.. .-...|+..|+..+...|++.-+--.... +..+...+ ...-..+
T Consensus 111 ~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~-----------i~~~~d~L------A~~Em~I 173 (254)
T COG4105 111 YYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKAR-----------IVKLNDAL------AGHEMAI 173 (254)
T ss_pred HHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHH-----------HHHHHHHH------HHHHHHH
Confidence 77777776543 12356778888888888876322111100 00001000 1122345
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCccc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Q 006562 524 GLALSSIGEYKKAEEAHLKAIQLDRNF---LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF 584 (640)
Q Consensus 524 a~~~~~~g~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 584 (640)
|..|.+.|.+-.|+..++.+++..|+. .+++..+..+|..+|-.++|...-.-.-...|++
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 666666677777777777666665544 4555666666677776666655444333333443
No 173
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.86 E-value=4.5e-08 Score=76.84 Aligned_cols=103 Identities=20% Similarity=0.267 Sum_probs=88.5
Q ss_pred HHhcCCHHHHHHHHHHHHccc-CchhHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCc----hHHHHHHHHHHHHcCCHH
Q 006562 46 LCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTL----LQAYILKGCAFSALGRKE 120 (640)
Q Consensus 46 ~~~~~~y~~Ai~~y~~ai~~~-~~~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~----~~a~~~~g~~y~~~g~~~ 120 (640)
+-..|+.+.|++.|.++|.+. ..+.+|.|||.++.-+|+-++|+.++++|+++.-.- ..+|..+|.+|..+|+-+
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd 132 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDD 132 (175)
T ss_pred HHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchH
Confidence 346799999999999999999 677789999999999999999999999999987443 348999999999999999
Q ss_pred HHHHHHHHHHhhccCChHHHHHHHhHHHHH
Q 006562 121 EALSVWEKGYEHALHQSADLKQFLELEELL 150 (640)
Q Consensus 121 ~A~~~~~~al~~~~~~~~~~~~~~~l~~~~ 150 (640)
.|...|+.|-.+. .+.+...++.+.|..
T Consensus 133 ~AR~DFe~AA~LG--S~FAr~QLV~lNPYA 160 (175)
T KOG4555|consen 133 AARADFEAAAQLG--SKFAREQLVELNPYA 160 (175)
T ss_pred HHHHhHHHHHHhC--CHHHHHHHHhcChHH
Confidence 9999999997765 455666667766653
No 174
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=9.9e-08 Score=90.90 Aligned_cols=129 Identities=22% Similarity=0.256 Sum_probs=80.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCC----C-----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Q 006562 384 RLSRGIAQVNEGKYASAISIFDQILKEDPM----Y-----------PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA 448 (640)
Q Consensus 384 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~----~-----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 448 (640)
.-..|..+++.|+|..|...|++++..-.. + ..++.+++.|+..+++|.+|+..+.++|..+|+|
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N 290 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNN 290 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 345688889999999999999888764321 1 2345566666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHHHh
Q 006562 449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAA-VEDLSACVKL 512 (640)
Q Consensus 449 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A-~~~~~~al~~ 512 (640)
..++++.|.++..+|+|+.|+..|++++++.|.+..+...+..+..+..++.+. .+.|..++..
T Consensus 291 ~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 291 VKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 666666666666666666666666666666666666655555555544443332 4444444443
No 175
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.84 E-value=1.6e-07 Score=90.51 Aligned_cols=200 Identities=17% Similarity=0.162 Sum_probs=144.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC--C----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------c
Q 006562 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDP--M----YPEALIGRGTARAFQRELEAAISDFTEAIQSNPS------A 448 (640)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~--~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~ 448 (640)
.+.+...|..|...|++++|...|.++....- . ....+...+.++... ++++|+.++++++...-. -
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~a 113 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQA 113 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHH
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 45667778889999999999999999876432 1 135566667776555 999999999999876422 1
Q ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc-----
Q 006562 449 GEAWKRRGQARAAL-GESVEAIQDLSKALEFEPNS------ADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN----- 516 (640)
Q Consensus 449 ~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----- 516 (640)
..++..+|.+|... |++++|+++|++++.+.... ...+..+|.++...|+|++|+..|++.....-++
T Consensus 114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~ 193 (282)
T PF14938_consen 114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKY 193 (282)
T ss_dssp HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccch
Confidence 45788899999998 99999999999999874322 3467889999999999999999999998764221
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccc-----HHHHHHHHHHHHH--hcCHHHHHHHHHHHHHhC
Q 006562 517 --KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF-----LEAWGHLTQFYQD--LANSEKALECLQQVLYID 581 (640)
Q Consensus 517 --~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-----~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~ 581 (640)
...++..+.++...|++..|...+++....+|.. ......+...+.. ...++.++.-|.+...++
T Consensus 194 ~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld 267 (282)
T PF14938_consen 194 SAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLD 267 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccH
Confidence 2455677889999999999999999999988754 2233333333332 345677777776654444
No 176
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.81 E-value=2.4e-07 Score=86.90 Aligned_cols=105 Identities=18% Similarity=0.147 Sum_probs=76.9
Q ss_pred HHHHHHHHHHH-HHccCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHH
Q 006562 415 PEALIGRGTAR-AFQRELEAAISDFTEAIQSNPSA---GEAWKRRGQARAALGESVEAIQDLSKALEFEPNS---ADILH 487 (640)
Q Consensus 415 ~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~ 487 (640)
....+..|..+ ...|+|++|+..|+..++.+|++ +.+++.+|.+|+..|++++|+..|++++..+|++ +++++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 45566666655 45677888888888888877776 4677778888888888888888888877776664 56777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHH
Q 006562 488 ERGIVNFKFKDFNAAVEDLSACVKLDKENKSA 519 (640)
Q Consensus 488 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 519 (640)
.+|.++...|++++|...|+++++..|+...+
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 77777777777777777777777777776543
No 177
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.81 E-value=4.3e-07 Score=84.43 Aligned_cols=219 Identities=19% Similarity=0.169 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------H
Q 006562 416 EALIGRGTARAFQRELEAAISDFTEAIQSNPSA-----GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA------D 484 (640)
Q Consensus 416 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~------~ 484 (640)
+++.+++..+....++.+++.+-.-.+.+.... ..+...+|..+..++.++++++.|+.+++...++. .
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 455666666666666666666665555443222 23444566666666666666666666666543321 2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC----c------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccC------c
Q 006562 485 ILHERGIVNFKFKDFNAAVEDLSACVKLDKE----N------KSAYTYLGLALSSIGEYKKAEEAHLKAIQLD------R 548 (640)
Q Consensus 485 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~----~------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~------~ 548 (640)
++..+|.++....++++|.-+..++.++... + ..+++.++..+..+|..-.|.++.+++.++. +
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 4556666666666666666666666554321 1 1334555666666666666666666665542 1
Q ss_pred ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC------CChHHHHHHHHHHHhcCCHHH-----HHHHHHHhhccCCC
Q 006562 549 NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK------RFSKAYHLRGLLLHGLGQHKK-----AIKDLSSGLGIDPS 617 (640)
Q Consensus 549 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~------~~~~~~~~la~~~~~~g~~~~-----A~~~~~~al~~~p~ 617 (640)
-.......+|.+|...|+.+.|..-|+.+..... ....++...|.++....-..+ |++.-.+++++...
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~ 323 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASS 323 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHH
Confidence 2234445566666666666666666666654322 112334444444433322222 55555555544322
Q ss_pred C------HHHHHHHHHHHHHcCC
Q 006562 618 N------IECLYLRASCYHAIGE 634 (640)
Q Consensus 618 ~------~~~~~~la~~~~~~g~ 634 (640)
- ...+..++.+|..+|.
T Consensus 324 IG~K~~vlK~hcrla~iYrs~gl 346 (518)
T KOG1941|consen 324 IGAKLSVLKLHCRLASIYRSKGL 346 (518)
T ss_pred hhhhHHHHHHHHHHHHHHHhccc
Confidence 1 1344555666655543
No 178
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.80 E-value=2.4e-06 Score=92.64 Aligned_cols=212 Identities=12% Similarity=-0.007 Sum_probs=185.3
Q ss_pred HHhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-CCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 006562 369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKE-DPMY----PEALIGRGTARAFQRELEAAISDFTEAIQ 443 (640)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~ 443 (640)
.+.+....+|++.-.|+..-..+++.++.+.|.+.+++++.. ++.. ..+|..+-.....-|.-+.-.+.|++|.+
T Consensus 1446 DferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq 1525 (1710)
T KOG1070|consen 1446 DFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ 1525 (1710)
T ss_pred HHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH
Confidence 467788899999999999888999999999999999999974 3432 23444444444455777778888999887
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--cHHHHH
Q 006562 444 SNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE--NKSAYT 521 (640)
Q Consensus 444 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~ 521 (640)
.. +...+|..|..+|...+++++|.++++..++...+...+|..++..++++++-+.|...+.+|++--|. +.....
T Consensus 1526 yc-d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~Is 1604 (1710)
T KOG1070|consen 1526 YC-DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFIS 1604 (1710)
T ss_pred hc-chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHH
Confidence 65 345678889999999999999999999999999888999999999999999999999999999999998 677888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Q 006562 522 YLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYID 581 (640)
Q Consensus 522 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 581 (640)
..|.+-++.|+.+.+...|+..+..+|.-.+.|.-+...-.+.|+.+.+..+|++++.+.
T Consensus 1605 kfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1605 KFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred HHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 899999999999999999999999999999999999999999999999999999998764
No 179
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.77 E-value=2.7e-07 Score=91.03 Aligned_cols=119 Identities=18% Similarity=0.216 Sum_probs=81.6
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Q 006562 422 GTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNA 501 (640)
Q Consensus 422 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~ 501 (640)
-.++...++++.|+..+++..+.+|+ +...++.++...++..+|+..+.+++...|.+...+...+..+...++++.
T Consensus 176 l~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~l 252 (395)
T PF09295_consen 176 LKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYEL 252 (395)
T ss_pred HHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Confidence 34444456677777777776666653 444566677667777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006562 502 AVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKA 543 (640)
Q Consensus 502 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 543 (640)
|+...++++...|.+...|+.|+.+|...|+++.|+..++.+
T Consensus 253 AL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 253 ALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 777777777777777777777777777777777777666544
No 180
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.77 E-value=4.7e-06 Score=75.19 Aligned_cols=189 Identities=16% Similarity=0.055 Sum_probs=139.8
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHH
Q 006562 414 YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSAD---ILH 487 (640)
Q Consensus 414 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~ 487 (640)
.+..++.-|...++.|++++|...|+.+....|.. ..+...++.++++.+++++|+...++-+.+.|.++. +++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 46788899999999999999999999999888865 457888999999999999999999999999887754 566
Q ss_pred HHHHHHHhcC--------CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHH
Q 006562 488 ERGIVNFKFK--------DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ 559 (640)
Q Consensus 488 ~la~~~~~~~--------~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~ 559 (640)
..|.+++..= -...|+..++..+...|++.-+-..... +..+... ...--..+|+
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~-----------i~~~~d~------LA~~Em~Iar 175 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKAR-----------IVKLNDA------LAGHEMAIAR 175 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHH-----------HHHHHHH------HHHHHHHHHH
Confidence 6777655421 2345667777777777776432111111 1111111 1223356899
Q ss_pred HHHHhcCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCH
Q 006562 560 FYQDLANSEKALECLQQVLYIDKRF---SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI 619 (640)
Q Consensus 560 ~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 619 (640)
.|.+.|.+..|+..++.+++..|+. .+++..+..+|..+|-.++|...-.-.-...|+++
T Consensus 176 yY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 176 YYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 9999999999999999999987754 45788889999999999999887665555556654
No 181
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.75 E-value=2.9e-07 Score=90.85 Aligned_cols=121 Identities=23% Similarity=0.211 Sum_probs=110.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q 006562 454 RRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEY 533 (640)
Q Consensus 454 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~ 533 (640)
.+-.++...++++.|+..+++..+.+|+ +...++.++...++..+|++.+.+++...|.+...+...+..+...+++
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Confidence 3455566678999999999999988874 6677899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 006562 534 KKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQV 577 (640)
Q Consensus 534 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 577 (640)
+.|+...++++...|.....|..|+.+|...|+++.|+..++.+
T Consensus 251 ~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 251 ELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999888755
No 182
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.74 E-value=1.1e-05 Score=72.50 Aligned_cols=239 Identities=16% Similarity=0.061 Sum_probs=150.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Q 006562 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVE 467 (640)
Q Consensus 388 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~ 467 (640)
.+.++..|+|..++..-.+..... ........+.+.|...|++...+......- .....+...++.....-++.+.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~~~ 90 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNKKS 90 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchhHH
Confidence 345666777777777666554433 556667777777777777665544433321 1112334444555444455555
Q ss_pred HHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 006562 468 AIQDLSKALEFE--PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ 545 (640)
Q Consensus 468 A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 545 (640)
-+..+.+.+... ..+......-|.++...|++++|++..... .+.++...-..++.++.+++-|...++++.+
T Consensus 91 ~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ 165 (299)
T KOG3081|consen 91 ILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQ 165 (299)
T ss_pred HHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 444444433322 222234445567777778888887777663 3345555556677777778888888887777
Q ss_pred cCcccHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHH
Q 006562 546 LDRNFLEAWGHLTQFYQD----LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIEC 621 (640)
Q Consensus 546 ~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 621 (640)
++.+. ....||..+.. .+...+|.-+|+..-+..|..+.....++.++..+|++++|...++.++..+++++++
T Consensus 166 ided~--tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpet 243 (299)
T KOG3081|consen 166 IDEDA--TLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPET 243 (299)
T ss_pred cchHH--HHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHH
Confidence 76442 33334444333 2457777788887777677777777888888888888888888888888888888888
Q ss_pred HHHHHHHHHHcCCccc
Q 006562 622 LYLRASCYHAIGEYRE 637 (640)
Q Consensus 622 ~~~la~~~~~~g~~~~ 637 (640)
+.++..+-..+|...+
T Consensus 244 L~Nliv~a~~~Gkd~~ 259 (299)
T KOG3081|consen 244 LANLIVLALHLGKDAE 259 (299)
T ss_pred HHHHHHHHHHhCCChH
Confidence 8887777777776544
No 183
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.74 E-value=1.3e-05 Score=83.57 Aligned_cols=226 Identities=13% Similarity=0.008 Sum_probs=155.4
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 006562 391 QVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQ 470 (640)
Q Consensus 391 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~ 470 (640)
....++|.+|+....+.++..|+.+.+....|..+.++|..++|..+++..-...+++...+-.+-.+|..++++++|..
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence 34567888888888888888888888888888888888888888877777766677777777778888888888888888
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCC---------HHHHHHHH
Q 006562 471 DLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS-IGE---------YKKAEEAH 540 (640)
Q Consensus 471 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~g~---------~~~A~~~~ 540 (640)
+|++++..+|. .+....+-.+|.+.+.|.+-.+.--+..+..|+++..+.....+... ... ..-|...+
T Consensus 99 ~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~ 177 (932)
T KOG2053|consen 99 LYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMV 177 (932)
T ss_pred HHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHH
Confidence 88888888887 77777777788887777766666666666777776444433333332 222 22355556
Q ss_pred HHHHccC-ccc--HHHHHHHHHHHHHhcCHHHHHHHHHHHH-HhCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHhhccC
Q 006562 541 LKAIQLD-RNF--LEAWGHLTQFYQDLANSEKALECLQQVL-YIDK-RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGID 615 (640)
Q Consensus 541 ~~a~~~~-~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 615 (640)
++.++.. +-. .++ ...-.++..+|++++|...+..-+ +..+ .+...-......+...+++.+-.+...+++...
T Consensus 178 ~~~l~~~gk~~s~aE~-~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 178 QKLLEKKGKIESEAEI-ILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHhccCCccchHHHH-HHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 6666554 211 222 223345566788888888884332 2333 333333455666777888888888888888877
Q ss_pred CCC
Q 006562 616 PSN 618 (640)
Q Consensus 616 p~~ 618 (640)
+++
T Consensus 257 ~Dd 259 (932)
T KOG2053|consen 257 NDD 259 (932)
T ss_pred Ccc
Confidence 776
No 184
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.72 E-value=6.2e-08 Score=72.06 Aligned_cols=64 Identities=27% Similarity=0.325 Sum_probs=50.3
Q ss_pred HHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHH
Q 006562 76 AFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSAD 139 (640)
Q Consensus 76 A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 139 (640)
+.+|++.++|++|+..+++++.++|+++.+++.+|.+|..+|++++|+..|+++++++|+.+..
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 4567778888888888888888888888888888888888888888888888887777766544
No 185
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.72 E-value=3.3e-05 Score=73.02 Aligned_cols=248 Identities=19% Similarity=0.099 Sum_probs=179.1
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 006562 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY-PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQA 458 (640)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 458 (640)
.+-+++.-+...+-.|+++.|.+-|+..+. +|.. .-.+..+-.-....|..+.|..+.+++....|.-+.++...-..
T Consensus 119 epLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~ 197 (531)
T COG3898 119 EPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEA 197 (531)
T ss_pred hHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHH
Confidence 356777788888899999999999998775 4432 22233333344567999999999999999999998888888888
Q ss_pred HHHcCCHHHHHHHHHHHHHhC---CCCH---HHHHHHHHHHH-hcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 006562 459 RAALGESVEAIQDLSKALEFE---PNSA---DILHERGIVNF-KFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIG 531 (640)
Q Consensus 459 ~~~~~~~~~A~~~~~~al~~~---p~~~---~~~~~la~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g 531 (640)
....|+|+.|+++.+...... ++.. .+...-+.... -.-+...|...-.+++++.|+....-..-+..++..|
T Consensus 198 r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~ 277 (531)
T COG3898 198 RCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDG 277 (531)
T ss_pred HHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhcc
Confidence 889999999999988765432 2211 11111222222 2346788888899999999998888888899999999
Q ss_pred CHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH---HHhCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 006562 532 EYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQV---LYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL 608 (640)
Q Consensus 532 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a---l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 608 (640)
+..++-.+++.+.+..|. |.+ +.+|....--+.++.-++++ ..+.|++.+.....+..-+.-|++..|...-
T Consensus 278 ~~rKg~~ilE~aWK~ePH-P~i----a~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~A 352 (531)
T COG3898 278 NLRKGSKILETAWKAEPH-PDI----ALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKA 352 (531)
T ss_pred chhhhhhHHHHHHhcCCC-hHH----HHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHH
Confidence 999999999999998875 333 33333333333444444444 4567888888888899989999999999888
Q ss_pred HHhhccCCCCHHHHHHHHHHHHHc-CC
Q 006562 609 SSGLGIDPSNIECLYLRASCYHAI-GE 634 (640)
Q Consensus 609 ~~al~~~p~~~~~~~~la~~~~~~-g~ 634 (640)
+.+....|. ..++..|+.+-... |+
T Consensus 353 eaa~r~~pr-es~~lLlAdIeeAetGD 378 (531)
T COG3898 353 EAAAREAPR-ESAYLLLADIEEAETGD 378 (531)
T ss_pred HHHhhhCch-hhHHHHHHHHHhhccCc
Confidence 888888886 45566666665543 44
No 186
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.71 E-value=8.1e-09 Score=95.26 Aligned_cols=104 Identities=22% Similarity=0.307 Sum_probs=95.4
Q ss_pred hhHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHccc-CchhHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHH
Q 006562 30 DSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108 (640)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~y~~Ai~~y~~ai~~~-~~~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~ 108 (640)
+.-+.-+...++...+++..|++++||+.|+++|.++ +....|.+||.+++++++...||.+|..|++++|+..+.|-.
T Consensus 108 ee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykf 187 (377)
T KOG1308|consen 108 EEMMDQANDKKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKF 187 (377)
T ss_pred HHHHHHHHHHHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccch
Confidence 3445555677788889999999999999999999999 666779999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhc
Q 006562 109 KGCAFSALGRKEEALSVWEKGYEHA 133 (640)
Q Consensus 109 ~g~~y~~~g~~~~A~~~~~~al~~~ 133 (640)
+|.+...+|+|++|.+.|..+.+++
T Consensus 188 rg~A~rllg~~e~aa~dl~~a~kld 212 (377)
T KOG1308|consen 188 RGYAERLLGNWEEAAHDLALACKLD 212 (377)
T ss_pred hhHHHHHhhchHHHHHHHHHHHhcc
Confidence 9999999999999999999997765
No 187
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.71 E-value=5.6e-07 Score=72.77 Aligned_cols=94 Identities=23% Similarity=0.158 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHH
Q 006562 417 ALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAWKRRGQARAALGESVEAIQDLSKALEFEPN---SADILHERG 490 (640)
Q Consensus 417 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la 490 (640)
+++.+|.++-..|+.++|+.+|++++...... ..++..+|..+..+|++++|+..+++++...|+ +..+...++
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA 82 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence 34444444444444444444444444432221 234444444444444444444444444444444 333344444
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 006562 491 IVNFKFKDFNAAVEDLSACV 510 (640)
Q Consensus 491 ~~~~~~~~~~~A~~~~~~al 510 (640)
.++...|++++|+..+-.++
T Consensus 83 l~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHCCCHHHHHHHHHHHH
Confidence 44444444444444444433
No 188
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.69 E-value=6e-07 Score=72.63 Aligned_cols=94 Identities=24% Similarity=0.223 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC---cHHHHHHHH
Q 006562 451 AWKRRGQARAALGESVEAIQDLSKALEFEPNS---ADILHERGIVNFKFKDFNAAVEDLSACVKLDKE---NKSAYTYLG 524 (640)
Q Consensus 451 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~la 524 (640)
+++.+|.++...|+.++|+..|++++...... ..++..+|..+...|++++|+..+++++...|+ +..+...++
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA 82 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence 34445555555555555555555555543322 234444555555555555555555555554444 344444445
Q ss_pred HHHHHcCCHHHHHHHHHHHH
Q 006562 525 LALSSIGEYKKAEEAHLKAI 544 (640)
Q Consensus 525 ~~~~~~g~~~~A~~~~~~a~ 544 (640)
.++...|++++|+..+-.++
T Consensus 83 l~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHCCCHHHHHHHHHHHH
Confidence 55555555555555444433
No 189
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.68 E-value=7.3e-08 Score=70.50 Aligned_cols=66 Identities=21% Similarity=0.317 Sum_probs=47.5
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 006562 392 VNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQ 457 (640)
Q Consensus 392 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 457 (640)
+..|++++|+..|++++..+|++..+++.+|.++...|++++|...+++++..+|+++.++..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 456777777777777777777777777777777777777777777777777777777666665554
No 190
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.65 E-value=1.2e-07 Score=69.30 Aligned_cols=66 Identities=26% Similarity=0.174 Sum_probs=48.6
Q ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHH
Q 006562 562 QDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS 627 (640)
Q Consensus 562 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 627 (640)
+..|++++|+..|++++..+|++..++..+|.++...|++++|...+++++..+|+++.++..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 456777777777777777777777777777777777777777777777777777777666666554
No 191
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.64 E-value=1.5e-06 Score=71.38 Aligned_cols=104 Identities=22% Similarity=0.257 Sum_probs=82.3
Q ss_pred ccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH---HHH
Q 006562 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG---EAW 452 (640)
Q Consensus 379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~ 452 (640)
..+..++..|...+..|+|.+|++.|+.+....|.. ..+.+.++.+|+..|++++|+..+++-++++|.++ .++
T Consensus 8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~ 87 (142)
T PF13512_consen 8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAY 87 (142)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 456778889999999999999999999999887764 57888999999999999999999999999998875 577
Q ss_pred HHHHHHHHHcCC---------------HHHHHHHHHHHHHhCCCC
Q 006562 453 KRRGQARAALGE---------------SVEAIQDLSKALEFEPNS 482 (640)
Q Consensus 453 ~~la~~~~~~~~---------------~~~A~~~~~~al~~~p~~ 482 (640)
+..|.+++.... ...|...|++.+...|++
T Consensus 88 Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S 132 (142)
T PF13512_consen 88 YMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNS 132 (142)
T ss_pred HHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCC
Confidence 888888777655 444555555555555544
No 192
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.62 E-value=1.4e-06 Score=79.24 Aligned_cols=104 Identities=22% Similarity=0.289 Sum_probs=85.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HHHHHHHHH
Q 006562 384 RLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAWKRRGQ 457 (640)
Q Consensus 384 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~ 457 (640)
.|..|.-++..|+|..|...|..-++..|+. +.++++||.+++.+|+|+.|...|..+.+..|++ +++++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 6777888888888888888888888888874 6788888888888888888888888888877764 577888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 006562 458 ARAALGESVEAIQDLSKALEFEPNSADILH 487 (640)
Q Consensus 458 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 487 (640)
+...+|+.++|...|+++++..|....+..
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 888888888888888888888887765543
No 193
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.61 E-value=1.1e-06 Score=80.07 Aligned_cols=101 Identities=23% Similarity=0.243 Sum_probs=51.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccc---HHHHHHHHH
Q 006562 486 LHERGIVNFKFKDFNAAVEDLSACVKLDKEN---KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF---LEAWGHLTQ 559 (640)
Q Consensus 486 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~---~~~~~~la~ 559 (640)
.+..|.-++..|+|..|...|..-++..|+. +.++++||.+++.+|+++.|...|..+.+..|++ +++++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 4444555555555555555555555555543 3455555555555555555555555555544433 444555555
Q ss_pred HHHHhcCHHHHHHHHHHHHHhCCCChH
Q 006562 560 FYQDLANSEKALECLQQVLYIDKRFSK 586 (640)
Q Consensus 560 ~~~~~g~~~~A~~~~~~al~~~~~~~~ 586 (640)
+...+|+.++|...|+++++..|..+.
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 555555555555555555555554443
No 194
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.60 E-value=2.9e-05 Score=80.02 Aligned_cols=244 Identities=16% Similarity=0.114 Sum_probs=156.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 006562 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGE 464 (640)
Q Consensus 385 ~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 464 (640)
...|......|..++|..+|++.-+. -.+-..|...|.+++|.+..+.--.+. -...|+..|..+...++
T Consensus 804 akvAvLAieLgMlEeA~~lYr~ckR~--------DLlNKlyQs~g~w~eA~eiAE~~DRiH--Lr~Tyy~yA~~Lear~D 873 (1416)
T KOG3617|consen 804 AKVAVLAIELGMLEEALILYRQCKRY--------DLLNKLYQSQGMWSEAFEIAETKDRIH--LRNTYYNYAKYLEARRD 873 (1416)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHH--------HHHHHHHHhcccHHHHHHHHhhcccee--hhhhHHHHHHHHHhhcc
Confidence 34566777888899999999887653 234566667777777776655421111 23456677777777777
Q ss_pred HHHHHHHHHHH----------HHhCC----------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------------
Q 006562 465 SVEAIQDLSKA----------LEFEP----------NSADILHERGIVNFKFKDFNAAVEDLSACVKL------------ 512 (640)
Q Consensus 465 ~~~A~~~~~~a----------l~~~p----------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------------ 512 (640)
.+.|+++|+++ +.-+| .++..|...|..+...|+.+.|+.+|..+-..
T Consensus 874 i~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk 953 (1416)
T KOG3617|consen 874 IEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGK 953 (1416)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccC
Confidence 77777777754 22233 23446667777777888888888877766432
Q ss_pred ---------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc------Cccc--------------HHHHHHHHHHHHH
Q 006562 513 ---------DKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL------DRNF--------------LEAWGHLTQFYQD 563 (640)
Q Consensus 513 ---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~------~~~~--------------~~~~~~la~~~~~ 563 (640)
...+..+.+.+|+.|...|++.+|+..|.++-.. ..++ +.-....|..|..
T Consensus 954 ~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe 1033 (1416)
T KOG3617|consen 954 TDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEE 1033 (1416)
T ss_pred chHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHH
Confidence 2345567788899999999999998888776433 1111 1111223334444
Q ss_pred hc-CHHHHHHHHHHH------H-----------------HhCC-CChHHHHHHHHHHHhcCCHHHHHHHHHH------hh
Q 006562 564 LA-NSEKALECLQQV------L-----------------YIDK-RFSKAYHLRGLLLHGLGQHKKAIKDLSS------GL 612 (640)
Q Consensus 564 ~g-~~~~A~~~~~~a------l-----------------~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~------al 612 (640)
.| ....|..+|.++ + .++| .+|.....-+..+....+|++|...+-. |+
T Consensus 1034 ~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~Al 1113 (1416)
T KOG3617|consen 1034 LGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGAL 1113 (1416)
T ss_pred cchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 44 555555555433 1 1233 4677888888899999999999876543 33
Q ss_pred cc----------------CCC---------CHHHHHHHHHHHHHcCCcccc
Q 006562 613 GI----------------DPS---------NIECLYLRASCYHAIGEYREA 638 (640)
Q Consensus 613 ~~----------------~p~---------~~~~~~~la~~~~~~g~~~~A 638 (640)
++ .|. ...++..+|.++.++|.|..|
T Consensus 1114 qlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~A 1164 (1416)
T KOG3617|consen 1114 QLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAA 1164 (1416)
T ss_pred HHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHH
Confidence 32 121 126788899999999998766
No 195
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.59 E-value=4.8e-07 Score=76.98 Aligned_cols=109 Identities=23% Similarity=0.265 Sum_probs=86.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHH
Q 006562 486 LHERGIVNFKFKDFNAAVEDLSACVKLDKENK-----SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQF 560 (640)
Q Consensus 486 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~-----~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 560 (640)
+..-|.-++..|+|++|..-|..++...|..+ ..+.+.|.++++++.++.|+..+.++++++|.+..++...|.+
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAea 177 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEA 177 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHH
Confidence 44557888888888888888888888888653 4566778888888888888888888888888888888888888
Q ss_pred HHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 006562 561 YQDLANSEKALECLQQVLYIDKRFSKAYHLRGLL 594 (640)
Q Consensus 561 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~ 594 (640)
|.++..+++|+.-|.++++.+|....+....+.+
T Consensus 178 yek~ek~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 8888888888888888888888766655555444
No 196
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.57 E-value=1.2e-05 Score=67.82 Aligned_cols=143 Identities=10% Similarity=0.107 Sum_probs=78.8
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006562 464 ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVK-LDKENKSAYTYLGLALSSIGEYKKAEEAHLK 542 (640)
Q Consensus 464 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 542 (640)
+++....-..+.+...|.. .-.+.+|..+...|++.+|...|++++. +.-.++..+..++...+..+++..|...+++
T Consensus 71 dP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~ 149 (251)
T COG4700 71 DPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLED 149 (251)
T ss_pred ChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 3444444444444444432 2344556666666666666666666554 2344555566666666666666666666666
Q ss_pred HHccCccc--HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 006562 543 AIQLDRNF--LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL 608 (640)
Q Consensus 543 a~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 608 (640)
..+.+|.. +.....+|+.+...|.+.+|...|+.++...|+ +.+....+..+..+|+..+|..-+
T Consensus 150 l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 150 LMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred HhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHH
Confidence 66555432 455555666666666666666666666655554 445555555666666555554443
No 197
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.57 E-value=3.4e-07 Score=68.08 Aligned_cols=68 Identities=29% Similarity=0.443 Sum_probs=42.7
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHH
Q 006562 558 TQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR 625 (640)
Q Consensus 558 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 625 (640)
..+|...+++++|+.++++++..+|+++..+..+|.++..+|++.+|+..|+++++..|+++.+...+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 34556666666666666666666666666666666666666666666666666666666665554443
No 198
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.55 E-value=9.8e-06 Score=68.41 Aligned_cols=144 Identities=16% Similarity=0.101 Sum_probs=122.3
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-cCcccHHHHHHHHHHHHHhcCHHHHH
Q 006562 493 NFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ-LDRNFLEAWGHLTQFYQDLANSEKAL 571 (640)
Q Consensus 493 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~~~~~~~~~~la~~~~~~g~~~~A~ 571 (640)
..+.=+.+....-..+.+...|.. .-.+.+|..+...|++.+|...|++++. +...++..+..+++..+..+++..|.
T Consensus 66 ~~q~ldP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~ 144 (251)
T COG4700 66 LQQKLDPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQ 144 (251)
T ss_pred HHHhcChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHH
Confidence 334445566666666666666643 4567899999999999999999999986 45677889999999999999999999
Q ss_pred HHHHHHHHhCC--CChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCCcccc
Q 006562 572 ECLQQVLYIDK--RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREA 638 (640)
Q Consensus 572 ~~~~~al~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 638 (640)
..+++..+..| ..+.....+|..+...|.+.+|...|+.++...|+ +.+....+..+.++|+..+|
T Consensus 145 ~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea 212 (251)
T COG4700 145 QTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREA 212 (251)
T ss_pred HHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHH
Confidence 99999999888 45788999999999999999999999999999997 77888889999999977665
No 199
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.50 E-value=0.00012 Score=65.68 Aligned_cols=225 Identities=16% Similarity=0.132 Sum_probs=109.7
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------------------H-HHHHHHHHHHHHccCHHHHHHHHHH
Q 006562 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY------------------P-EALIGRGTARAFQRELEAAISDFTE 440 (640)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~------------------~-~~~~~la~~~~~~g~~~~A~~~~~~ 440 (640)
...+|...-.++.....+++|...+...-+.+..+ | .....-|.+....|+..+.+.-+..
T Consensus 68 ~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~ 147 (366)
T KOG2796|consen 68 SLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHK 147 (366)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 34556666666677777777776666554443211 1 1223345555566666666555444
Q ss_pred HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCcHHH
Q 006562 441 AIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD-KENKSA 519 (640)
Q Consensus 441 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~ 519 (640)
....-. .+-.........+..+..+++-+ ..+.+.+..++...|+|.-.+..+.+.++.+ |.++..
T Consensus 148 L~~~V~-------~ii~~~e~~~~~ESsv~lW~KRl------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L 214 (366)
T KOG2796|consen 148 LKTVVS-------KILANLEQGLAEESSIRLWRKRL------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQL 214 (366)
T ss_pred HHHHHH-------HHHHHHHhccchhhHHHHHHHHH------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHH
Confidence 332100 01111111111122233333221 1234445555555555555555555555554 344555
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHccC------cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 006562 520 YTYLGLALSSIGEYKKAEEAHLKAIQLD------RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGL 593 (640)
Q Consensus 520 ~~~la~~~~~~g~~~~A~~~~~~a~~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~ 593 (640)
...+|.+..+.|+.+.|..+|++.-+.. .....+..+.+.++.-.+++..|...+.+++..+|.++.+-...|.
T Consensus 215 ~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKAL 294 (366)
T KOG2796|consen 215 LSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKAL 294 (366)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHH
Confidence 5555555555555555555555332211 1112333444455555555555555555555555555555555555
Q ss_pred HHHhcCCHHHHHHHHHHhhccCCC
Q 006562 594 LLHGLGQHKKAIKDLSSGLGIDPS 617 (640)
Q Consensus 594 ~~~~~g~~~~A~~~~~~al~~~p~ 617 (640)
|....|+..+|++.++.+++..|.
T Consensus 295 cllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 295 CLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCc
Confidence 555555555555555555555554
No 200
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.50 E-value=4.7e-07 Score=88.55 Aligned_cols=66 Identities=18% Similarity=0.235 Sum_probs=61.0
Q ss_pred CchhHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHH---HHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 006562 67 YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQA---YILKGCAFSALGRKEEALSVWEKGYEH 132 (640)
Q Consensus 67 ~~~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a---~~~~g~~y~~~g~~~~A~~~~~~al~~ 132 (640)
.++..++|+|.+|+++|+|++|+..|++||+++|++.++ |+.+|.+|..+|++++|+.+|++|+++
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344558999999999999999999999999999999965 999999999999999999999999765
No 201
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.48 E-value=7.4e-06 Score=67.31 Aligned_cols=85 Identities=18% Similarity=0.201 Sum_probs=65.6
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHH
Q 006562 414 YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA---DILH 487 (640)
Q Consensus 414 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~ 487 (640)
.+..++..|...+..|+|.+|++.|+.+....|.. ..+...++.+|+..+++++|+..+++.++++|.++ .+++
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 35677788888888888888888888888877754 45777888888888888888888888888888774 4677
Q ss_pred HHHHHHHhcCC
Q 006562 488 ERGIVNFKFKD 498 (640)
Q Consensus 488 ~la~~~~~~~~ 498 (640)
..|.+++.+..
T Consensus 89 ~~gL~~~~~~~ 99 (142)
T PF13512_consen 89 MRGLSYYEQDE 99 (142)
T ss_pred HHHHHHHHHhh
Confidence 77777766554
No 202
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.48 E-value=3.9e-05 Score=79.15 Aligned_cols=224 Identities=18% Similarity=0.120 Sum_probs=153.5
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 006562 403 IFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS 482 (640)
Q Consensus 403 ~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 482 (640)
.++++.+ +|+ +.-...|.+...+|..++|..+|++.-..+ .+-..|...|.|++|.+..+.--++. -
T Consensus 791 AlR~a~q-~~~--e~eakvAvLAieLgMlEeA~~lYr~ckR~D--------LlNKlyQs~g~w~eA~eiAE~~DRiH--L 857 (1416)
T KOG3617|consen 791 ALRRAQQ-NGE--EDEAKVAVLAIELGMLEEALILYRQCKRYD--------LLNKLYQSQGMWSEAFEIAETKDRIH--L 857 (1416)
T ss_pred HHHHHHh-CCc--chhhHHHHHHHHHhhHHHHHHHHHHHHHHH--------HHHHHHHhcccHHHHHHHHhhcccee--h
Confidence 3444444 333 333455677788899999999999976543 57788899999999988776533222 2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHH----------HHhCC----------CcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006562 483 ADILHERGIVNFKFKDFNAAVEDLSAC----------VKLDK----------ENKSAYTYLGLALSSIGEYKKAEEAHLK 542 (640)
Q Consensus 483 ~~~~~~la~~~~~~~~~~~A~~~~~~a----------l~~~~----------~~~~~~~~la~~~~~~g~~~~A~~~~~~ 542 (640)
...|+..+..+...++.+.|+++|+++ +.-+| .++..|.+.|..+...|+.+.|+.+|..
T Consensus 858 r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~ 937 (1416)
T KOG3617|consen 858 RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS 937 (1416)
T ss_pred hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence 347889999999999999999999875 22233 3456788889999999999999999988
Q ss_pred HHccC---------------------cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------CCCC-----------
Q 006562 543 AIQLD---------------------RNFLEAWGHLTQFYQDLANSEKALECLQQVLYI------DKRF----------- 584 (640)
Q Consensus 543 a~~~~---------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~~~~----------- 584 (640)
+-... ..+..+.+.+|+.|...|+..+|+.+|.++-.. ...+
T Consensus 938 A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal 1017 (1416)
T KOG3617|consen 938 AKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLAL 1017 (1416)
T ss_pred hhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 75432 234567789999999999999999999887432 2111
Q ss_pred ---hHHHHHHHHHHHhcC-CHHHHHHHHHHh------h-----------------ccCC-CCHHHHHHHHHHHHHcCCcc
Q 006562 585 ---SKAYHLRGLLLHGLG-QHKKAIKDLSSG------L-----------------GIDP-SNIECLYLRASCYHAIGEYR 636 (640)
Q Consensus 585 ---~~~~~~la~~~~~~g-~~~~A~~~~~~a------l-----------------~~~p-~~~~~~~~la~~~~~~g~~~ 636 (640)
+.-....|..|...| +...|...|.+| + .++| .++..+..-+..+....+|+
T Consensus 1018 ~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qye 1097 (1416)
T KOG3617|consen 1018 MSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYE 1097 (1416)
T ss_pred hcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHH
Confidence 111122233344444 444444444332 1 1233 46778888888888888888
Q ss_pred ccc
Q 006562 637 EAV 639 (640)
Q Consensus 637 ~Al 639 (640)
.|+
T Consensus 1098 kAV 1100 (1416)
T KOG3617|consen 1098 KAV 1100 (1416)
T ss_pred HHH
Confidence 875
No 203
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.47 E-value=0.00077 Score=70.92 Aligned_cols=215 Identities=13% Similarity=0.032 Sum_probs=160.1
Q ss_pred HHhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Q 006562 369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA 448 (640)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 448 (640)
...++.+..|+...+....|..+++.|..++|..+++..-...+++...+-.+-.+|..+|++++|..+|++++..+|.
T Consensus 31 ~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~- 109 (932)
T KOG2053|consen 31 KLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS- 109 (932)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-
Confidence 3567778899999999999999999999999998888877788888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHhcCCHH---------HHHHHHHHHHHhC-CCc-
Q 006562 449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADI-LHERGIVNFKFKDFN---------AAVEDLSACVKLD-KEN- 516 (640)
Q Consensus 449 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~-~~~la~~~~~~~~~~---------~A~~~~~~al~~~-~~~- 516 (640)
.+....+=.+|.+.+.|.+-.+.--+..+..|+.+.. |..+..++......+ -|....++.++.. +-.
T Consensus 110 eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s 189 (932)
T KOG2053|consen 110 EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIES 189 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccch
Confidence 7777788888888888877666666666778887654 444444444333322 3445555555554 211
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH-c-cCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Q 006562 517 KSAYTYLGLALSSIGEYKKAEEAHLKAI-Q-LDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF 584 (640)
Q Consensus 517 ~~~~~~la~~~~~~g~~~~A~~~~~~a~-~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 584 (640)
..-....-.++..+|++++|...+..-+ + ..+.+...-......+...+++.+-.+...+++...+++
T Consensus 190 ~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 190 EAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc
Confidence 1112234456677899999999884322 2 233344444556677778889999999988988888876
No 204
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.42 E-value=0.00036 Score=66.25 Aligned_cols=248 Identities=17% Similarity=0.112 Sum_probs=181.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHH
Q 006562 385 LSRGIAQVNEGKYASAISIFDQILKEDPM--YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG-EAWKRRGQARAA 461 (640)
Q Consensus 385 ~~~a~~~~~~g~~~~A~~~~~~~l~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~ 461 (640)
+..|.+....|+-..|.+.-.+.-++-.. .+-++..-+..-.-.|+++.|.+-|+-.+. +|..- -.+..+-.--..
T Consensus 88 LStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr 166 (531)
T COG3898 88 LSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQR 166 (531)
T ss_pred HhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHh
Confidence 34566677788999999988887644333 356667778888889999999999998874 33321 122222233356
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---CCc---HHHHHHHHHHHH-HcCCHH
Q 006562 462 LGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD---KEN---KSAYTYLGLALS-SIGEYK 534 (640)
Q Consensus 462 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---~~~---~~~~~~la~~~~-~~g~~~ 534 (640)
.|..+.|+.+-+++....|.-+.++...-...+..|+|+.|++..+...... ++. ..+...-+.... -.-+..
T Consensus 167 ~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~ 246 (531)
T COG3898 167 LGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPA 246 (531)
T ss_pred cccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChH
Confidence 7999999999999999999999988888888999999999999998766532 221 112222222222 234678
Q ss_pred HHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHH---h
Q 006562 535 KAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSS---G 611 (640)
Q Consensus 535 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~---a 611 (640)
.|.....++.++.|+...+-..-+..++..|+..++-.+++.+.+..|. |.++. ..++.+.|+. ++.-+++ .
T Consensus 247 ~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH-P~ia~--lY~~ar~gdt--a~dRlkRa~~L 321 (531)
T COG3898 247 SARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH-PDIAL--LYVRARSGDT--ALDRLKRAKKL 321 (531)
T ss_pred HHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC-hHHHH--HHHHhcCCCc--HHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999998874 44322 2334455554 4444444 4
Q ss_pred hccCCCCHHHHHHHHHHHHHcCCcccc
Q 006562 612 LGIDPSNIECLYLRASCYHAIGEYREA 638 (640)
Q Consensus 612 l~~~p~~~~~~~~la~~~~~~g~~~~A 638 (640)
..+.|++.+..+..+..-...|++..|
T Consensus 322 ~slk~nnaes~~~va~aAlda~e~~~A 348 (531)
T COG3898 322 ESLKPNNAESSLAVAEAALDAGEFSAA 348 (531)
T ss_pred HhcCccchHHHHHHHHHHHhccchHHH
Confidence 467899999999999998888887654
No 205
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.38 E-value=8.8e-07 Score=66.78 Aligned_cols=63 Identities=25% Similarity=0.328 Sum_probs=53.8
Q ss_pred hHHHhHHHHHHhhhcHHHHHHHHHHHHHcC-------CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 006562 70 QDICNRAFCYSQLELHKHVIRDCDKALQLD-------PTLLQAYILKGCAFSALGRKEEALSVWEKGYEH 132 (640)
Q Consensus 70 ~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~-------P~~~~a~~~~g~~y~~~g~~~~A~~~~~~al~~ 132 (640)
.++.++|.+|..+|+|++|+..+++|+++. |..+.++..+|.+|..+|++++|+..|++|+++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 458899999999999999999999999762 223568999999999999999999999999554
No 206
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.35 E-value=0.00011 Score=71.44 Aligned_cols=269 Identities=17% Similarity=0.104 Sum_probs=193.7
Q ss_pred HhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHH-HHhCCC--------CHHHHHHHHHHHHHccCHHHHHHHHHH
Q 006562 370 VTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQI-LKEDPM--------YPEALIGRGTARAFQRELEAAISDFTE 440 (640)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~-l~~~~~--------~~~~~~~la~~~~~~g~~~~A~~~~~~ 440 (640)
...+......++..++.++..++..|+|..|.+.+... +...|. .-..|.++|-++++.|.|..+..+|.+
T Consensus 229 vK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~k 308 (696)
T KOG2471|consen 229 VKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLK 308 (696)
T ss_pred hhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHH
Confidence 34444555577889999999999999999999987653 222232 123467899999999999999999999
Q ss_pred HHH-h--------CC---------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC----
Q 006562 441 AIQ-S--------NP---------SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKD---- 498 (640)
Q Consensus 441 al~-~--------~p---------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~---- 498 (640)
+++ . .| ...++.++.|..|...|++-.|.++|.++......+|..|..++.+.+...+
T Consensus 309 AL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~~~~l~ 388 (696)
T KOG2471|consen 309 ALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMALQKGLL 388 (696)
T ss_pred HHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhh
Confidence 995 1 11 1346889999999999999999999999999999999999999999764210
Q ss_pred ---------------------------------------------HHHHHHHHHHHHHhCCC------------------
Q 006562 499 ---------------------------------------------FNAAVEDLSACVKLDKE------------------ 515 (640)
Q Consensus 499 ---------------------------------------------~~~A~~~~~~al~~~~~------------------ 515 (640)
.+-|.-+++.++-+-|.
T Consensus 389 ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll~e~q~~~~~~~~a~ns~~~g 468 (696)
T KOG2471|consen 389 EEGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALYLLNEKQDLGSILSVAMNSTKEG 468 (696)
T ss_pred hhccCCcccccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhhcCchhhcchhhhhhhccccccC
Confidence 22355566666543210
Q ss_pred ----------------------------cH-----------HHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHH
Q 006562 516 ----------------------------NK-----------SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGH 556 (640)
Q Consensus 516 ----------------------------~~-----------~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 556 (640)
.+ .++-..+.+-..+|+.-.|+..-.+.++. |+-..++..
T Consensus 469 ~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a~kLLq~-~~lS~~~kf 547 (696)
T KOG2471|consen 469 SSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPIKALSAATKLLQL-ADLSKIYKF 547 (696)
T ss_pred CCCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhh-hhhhhHHHH
Confidence 00 13445667777899999999998888875 444556666
Q ss_pred HHHHH-----HHhcCHHHHHHHHHHHH------H-----------------hCC----------CC-----hHHHHHHHH
Q 006562 557 LTQFY-----QDLANSEKALECLQQVL------Y-----------------IDK----------RF-----SKAYHLRGL 593 (640)
Q Consensus 557 la~~~-----~~~g~~~~A~~~~~~al------~-----------------~~~----------~~-----~~~~~~la~ 593 (640)
+|.+| +.+.+..+|...+.--+ . ++| .. ...++.+|.
T Consensus 548 LGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r~~q~~~~sv~~Ar~v~~~nLa~ 627 (696)
T KOG2471|consen 548 LGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTGRTRQSVFLSVEEARGVLFANLAA 627 (696)
T ss_pred HHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCCCCcccccCCHHHHhHHHHHHHHH
Confidence 66554 45677777776655411 0 011 01 124788999
Q ss_pred HHHhcCCHHHHHHHHHHhhccCC--CCHHHHHHHHHHHHHcCCccccc
Q 006562 594 LLHGLGQHKKAIKDLSSGLGIDP--SNIECLYLRASCYHAIGEYREAV 639 (640)
Q Consensus 594 ~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~Al 639 (640)
++.-+|++++|...+..+..+-+ .++.+......+-.++|+...|+
T Consensus 628 a~alq~~~dqAk~ll~~aatl~hs~v~~~A~~lavyidL~~G~~q~al 675 (696)
T KOG2471|consen 628 ALALQGHHDQAKSLLTHAATLLHSLVNVQATVLAVYIDLMLGRSQDAL 675 (696)
T ss_pred HHHHhcccHHHHHHHHHHHHhhhccccHHHHHHHHHHHHhcCCCcchH
Confidence 99999999999999998888776 45666666666677888877664
No 207
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.33 E-value=0.00037 Score=62.58 Aligned_cols=186 Identities=11% Similarity=0.096 Sum_probs=124.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q 006562 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGES 465 (640)
Q Consensus 386 ~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 465 (640)
.-|.+....|+..+.+.-+......- ..+-.........+..++.+++-+ ..+.+.+..++.-.+.|
T Consensus 127 lhAe~~~~lgnpqesLdRl~~L~~~V-------~~ii~~~e~~~~~ESsv~lW~KRl------~~Vmy~~~~~llG~kEy 193 (366)
T KOG2796|consen 127 LHAELQQYLGNPQESLDRLHKLKTVV-------SKILANLEQGLAEESSIRLWRKRL------GRVMYSMANCLLGMKEY 193 (366)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHH-------HHHHHHHHhccchhhHHHHHHHHH------HHHHHHHHHHHhcchhh
Confidence 33555566677777666555443211 111112222222344555555543 23566677777777888
Q ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC------CCcHHHHHHHHHHHHHcCCHHHHHH
Q 006562 466 VEAIQDLSKALEFE-PNSADILHERGIVNFKFKDFNAAVEDLSACVKLD------KENKSAYTYLGLALSSIGEYKKAEE 538 (640)
Q Consensus 466 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------~~~~~~~~~la~~~~~~g~~~~A~~ 538 (640)
.-....+.+.++.+ |..+.....+|.+.++.|+.+.|..+++.+-+.. .....+..+.+.++.-.+++..|..
T Consensus 194 ~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r 273 (366)
T KOG2796|consen 194 VLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHR 273 (366)
T ss_pred hhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHH
Confidence 88888888888776 5567777778888888888888888877543322 2234556667777777888888888
Q ss_pred HHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Q 006562 539 AHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF 584 (640)
Q Consensus 539 ~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 584 (640)
.+.+++..+|.++.+.++.|.|....|+..+|++.++.++...|..
T Consensus 274 ~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 274 FFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred HHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 8888888888888888888888888888888888888888887753
No 208
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.31 E-value=1.4e-05 Score=77.62 Aligned_cols=218 Identities=12% Similarity=0.011 Sum_probs=155.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CC--C
Q 006562 415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA-----GEAWKRRGQARAALGESVEAIQDLSKALEF------EP--N 481 (640)
Q Consensus 415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~p--~ 481 (640)
...+++.|.+++....+..|++.....+..-... ..+-...-..+....+-++|+.++.-.-++ .+ +
T Consensus 100 t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~gn 179 (696)
T KOG2471|consen 100 TVMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKLVGN 179 (696)
T ss_pred hHHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Confidence 3556777778877778888887776665443211 112223334455555666666554322211 00 0
Q ss_pred C-------------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH
Q 006562 482 S-------------------------ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKA 536 (640)
Q Consensus 482 ~-------------------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A 536 (640)
+ ..+.......+..+.+...+..-.+.++....+.+.+....+..++..|++.+|
T Consensus 180 ~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA 259 (696)
T KOG2471|consen 180 HIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKA 259 (696)
T ss_pred ccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHH
Confidence 0 113333445566777777787778888888888888999999999999999999
Q ss_pred HHHHHHHH-ccCcc--------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---------CC---------CChHHHH
Q 006562 537 EEAHLKAI-QLDRN--------FLEAWGHLTQFYQDLANSEKALECLQQVLYI---------DK---------RFSKAYH 589 (640)
Q Consensus 537 ~~~~~~a~-~~~~~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---------~~---------~~~~~~~ 589 (640)
.+.+...- ...|. ...+|.++|.+++++|.|.-+..+|.++++. .| ...++.+
T Consensus 260 ~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilY 339 (696)
T KOG2471|consen 260 MKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILY 339 (696)
T ss_pred HHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHH
Confidence 99886542 22222 2346789999999999999999999999951 11 3456889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHc
Q 006562 590 LRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAI 632 (640)
Q Consensus 590 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 632 (640)
+.|..|...|++-.|.++|.+++.....+|..|..+|.|+...
T Consensus 340 NcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 340 NCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998754
No 209
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.31 E-value=6.3e-06 Score=69.85 Aligned_cols=91 Identities=18% Similarity=0.259 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHccc-CchhHHHhHHHHHHhhh----------cHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCC--
Q 006562 52 WSKAIRILDSLLAQS-YEIQDICNRAFCYSQLE----------LHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGR-- 118 (640)
Q Consensus 52 y~~Ai~~y~~ai~~~-~~~~~~~~~A~~~~~~g----------~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~-- 118 (640)
|+.|.+.|+.....+ .++..+++-|.+++.+. -+++|+.-++.||.++|+..++++.+|.+|..++.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 578999999999999 56677888888887774 45678888999999999999999999999999875
Q ss_pred ---------HHHHHHHHHHHHhhccCChHHHHH
Q 006562 119 ---------KEEALSVWEKGYEHALHQSADLKQ 142 (640)
Q Consensus 119 ---------~~~A~~~~~~al~~~~~~~~~~~~ 142 (640)
|+.|..+|++|....|+.....+.
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ks 119 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKS 119 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 778888888998888876554433
No 210
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.30 E-value=3.1e-05 Score=61.26 Aligned_cols=91 Identities=25% Similarity=0.311 Sum_probs=45.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHhcC
Q 006562 524 GLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF----SKAYHLRGLLLHGLG 599 (640)
Q Consensus 524 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~g 599 (640)
|..+...|+.+.|++.|.+++.+.|..+.+|++.+..+..+|+.++|+.-+++++++..+. ..++...|.+|..+|
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 4444445555555555555555555555555555555555555555555555555443222 123444555555555
Q ss_pred CHHHHHHHHHHhhcc
Q 006562 600 QHKKAIKDLSSGLGI 614 (640)
Q Consensus 600 ~~~~A~~~~~~al~~ 614 (640)
+-+.|...|+.+-++
T Consensus 130 ~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 130 NDDAARADFEAAAQL 144 (175)
T ss_pred chHHHHHhHHHHHHh
Confidence 555555555544433
No 211
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.27 E-value=0.00018 Score=66.83 Aligned_cols=159 Identities=14% Similarity=0.063 Sum_probs=112.5
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHh
Q 006562 420 GRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEF-EPNS---ADILHERGIVNFK 495 (640)
Q Consensus 420 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~---~~~~~~la~~~~~ 495 (640)
.-+.+.+..|++.+|-...++.++..|.+.-++..--..++..|+...-...+++.+.. +|+. ..+.-.++..+..
T Consensus 108 ~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E 187 (491)
T KOG2610|consen 108 AKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEE 187 (491)
T ss_pred hhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHH
Confidence 34455666777888888888888888887777777777777788877777777777765 5544 3344456666777
Q ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccc----HHHHHHHHHHHHHhcCHHHHH
Q 006562 496 FKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF----LEAWGHLTQFYQDLANSEKAL 571 (640)
Q Consensus 496 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~g~~~~A~ 571 (640)
.|-|++|.+..+++++++|.+..+....+.++...|++.++.+...+.-..-... ..-|...+.++...+.|+.|+
T Consensus 188 ~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~al 267 (491)
T KOG2610|consen 188 CGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKAL 267 (491)
T ss_pred hccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHH
Confidence 7888888888888888888888787888888888888888887776654332211 223445667777778888888
Q ss_pred HHHHHHH
Q 006562 572 ECLQQVL 578 (640)
Q Consensus 572 ~~~~~al 578 (640)
++|.+-+
T Consensus 268 eIyD~ei 274 (491)
T KOG2610|consen 268 EIYDREI 274 (491)
T ss_pred HHHHHHH
Confidence 8877654
No 212
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.23 E-value=2.4e-05 Score=76.89 Aligned_cols=70 Identities=17% Similarity=0.311 Sum_probs=64.3
Q ss_pred ccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHccCHHHHHHHHHHHHHh
Q 006562 375 KSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEA---LIGRGTARAFQRELEAAISDFTEAIQS 444 (640)
Q Consensus 375 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~ 444 (640)
..+|.++..++++|..++..|+|++|+..|+++++++|++..+ |+++|.+|..+|++++|+.+++++++.
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3689999999999999999999999999999999999998854 999999999999999999999999987
No 213
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.23 E-value=0.00026 Score=62.38 Aligned_cols=179 Identities=15% Similarity=0.158 Sum_probs=119.0
Q ss_pred cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----C--CcHHHHHHHHHHHHHcCCHHH
Q 006562 394 EGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN----P--SAGEAWKRRGQARAALGESVE 467 (640)
Q Consensus 394 ~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p--~~~~~~~~la~~~~~~~~~~~ 467 (640)
.+.+++|.++|.+ -|..|....+|..|-..|.++-+.. . +....|...+.+|.. +++.+
T Consensus 27 ~~k~eeAadl~~~--------------Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk-~~~~e 91 (288)
T KOG1586|consen 27 SNKYEEAAELYER--------------AANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKK-VDPEE 91 (288)
T ss_pred CcchHHHHHHHHH--------------HHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc-cChHH
Confidence 3567777666655 3777777778888877777775432 1 123455555565544 48899
Q ss_pred HHHHHHHHHHhCCCCHH------HHHHHHHHHHhc-CCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHH
Q 006562 468 AIQDLSKALEFEPNSAD------ILHERGIVNFKF-KDFNAAVEDLSACVKLDKEN------KSAYTYLGLALSSIGEYK 534 (640)
Q Consensus 468 A~~~~~~al~~~p~~~~------~~~~la~~~~~~-~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~ 534 (640)
|+.++++++++..+-.. -+..+|.+|... .++++|+.+|+++-+..... ...+...+......++|.
T Consensus 92 Av~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~ 171 (288)
T KOG1586|consen 92 AVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYS 171 (288)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999988888654432 344677777655 78888888888887664332 234555666677788888
Q ss_pred HHHHHHHHHHccCcccH-------HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHH
Q 006562 535 KAEEAHLKAIQLDRNFL-------EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA 587 (640)
Q Consensus 535 ~A~~~~~~a~~~~~~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 587 (640)
+|+..|++.....-+++ ..++.-|.+++-..+.-.+...+++..+.+|.....
T Consensus 172 ~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 172 KAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred HHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence 88888888776544432 233455666666677777777788888888865443
No 214
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.22 E-value=0.0053 Score=60.29 Aligned_cols=213 Identities=12% Similarity=0.100 Sum_probs=142.6
Q ss_pred HcCChHHHHHHHHHHHHhC------CCC--------HHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCC-------c
Q 006562 393 NEGKYASAISIFDQILKED------PMY--------PEALIGRGTARAFQRELEAAISDFTEAIQS---NPS-------A 448 (640)
Q Consensus 393 ~~g~~~~A~~~~~~~l~~~------~~~--------~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~-------~ 448 (640)
..|-|++|.++-++++... +.. ...+-.+..|-.-.|++.+|++....+.+. .|. .
T Consensus 287 ~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~ 366 (629)
T KOG2300|consen 287 PAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHE 366 (629)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhH
Confidence 4455666666666665431 111 123345666777789999999888777654 343 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc---------
Q 006562 449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNS---ADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN--------- 516 (640)
Q Consensus 449 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~--------- 516 (640)
+..+..+|......+.++.|...|..+.+..... ..+..++|.+|...|+-+.-.+.++.. .|.+
T Consensus 367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i---~p~nt~s~ssq~l 443 (629)
T KOG2300|consen 367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLI---GPLNTNSLSSQRL 443 (629)
T ss_pred HHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhc---CCCCCCcchHHHH
Confidence 4466778888888899999999999988875432 234567888999988766555555443 3332
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcc------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCChH
Q 006562 517 -KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN------FLEAWGHLTQFYQDLANSEKALECLQQVLYID---KRFSK 586 (640)
Q Consensus 517 -~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---~~~~~ 586 (640)
..+++..|...+.++++.+|...+.+.++.... ..-.+..++.+....|+..++.....-++... |+.+.
T Consensus 444 ~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~v 523 (629)
T KOG2300|consen 444 EASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPV 523 (629)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchH
Confidence 356777888888999999999999998887521 13455678888888999999988888777654 34333
Q ss_pred ---HHHHHHHHHHhcCC--HHHHHHHH
Q 006562 587 ---AYHLRGLLLHGLGQ--HKKAIKDL 608 (640)
Q Consensus 587 ---~~~~la~~~~~~g~--~~~A~~~~ 608 (640)
....+-.++...|+ .+...+.+
T Consensus 524 qLws~si~~~L~~a~g~~~~~~e~e~~ 550 (629)
T KOG2300|consen 524 QLWSSSILTDLYQALGEKGNEMENEAF 550 (629)
T ss_pred HHHHHHHHHHHHHHhCcchhhHHHHHH
Confidence 23345566777776 44444433
No 215
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.18 E-value=3.8e-06 Score=63.26 Aligned_cols=26 Identities=19% Similarity=0.204 Sum_probs=11.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhh
Q 006562 587 AYHLRGLLLHGLGQHKKAIKDLSSGL 612 (640)
Q Consensus 587 ~~~~la~~~~~~g~~~~A~~~~~~al 612 (640)
++..+|.++..+|++++|+.++++++
T Consensus 48 ~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 48 TLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444444444444444444444443
No 216
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.15 E-value=2.5e-06 Score=51.57 Aligned_cols=32 Identities=31% Similarity=0.412 Sum_probs=30.5
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHHcCCHHHHH
Q 006562 92 CDKALQLDPTLLQAYILKGCAFSALGRKEEAL 123 (640)
Q Consensus 92 ~~~al~~~P~~~~a~~~~g~~y~~~g~~~~A~ 123 (640)
|++||+++|+++.+|+.+|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 78999999999999999999999999999996
No 217
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.15 E-value=0.00027 Score=65.67 Aligned_cols=159 Identities=14% Similarity=0.058 Sum_probs=133.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCc---HHHHHHHHHHHHH
Q 006562 454 RRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKL-DKEN---KSAYTYLGLALSS 529 (640)
Q Consensus 454 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~---~~~~~~la~~~~~ 529 (640)
.-+.+....|++.+|...+++.++-.|.+.-++..--.+++..|+...-...+++.+.. +++- ..+.-.++..+..
T Consensus 108 ~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E 187 (491)
T KOG2610|consen 108 AKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEE 187 (491)
T ss_pred hhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHH
Confidence 34556677899999999999999999999888888889999999999999999999877 6655 3445567788889
Q ss_pred cCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHhcCCHHHHH
Q 006562 530 IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF----SKAYHLRGLLLHGLGQHKKAI 605 (640)
Q Consensus 530 ~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A~ 605 (640)
.|-|++|.+..+++++++|.+..+....+.++...|++.++.+++.+.-..-... ..-|...|.++..-+.|+.|+
T Consensus 188 ~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~al 267 (491)
T KOG2610|consen 188 CGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKAL 267 (491)
T ss_pred hccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHH
Confidence 9999999999999999999999999999999999999999999988764332211 123566788888899999999
Q ss_pred HHHHHhh
Q 006562 606 KDLSSGL 612 (640)
Q Consensus 606 ~~~~~al 612 (640)
+.|.+-+
T Consensus 268 eIyD~ei 274 (491)
T KOG2610|consen 268 EIYDREI 274 (491)
T ss_pred HHHHHHH
Confidence 9998765
No 218
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.14 E-value=4.7e-05 Score=64.69 Aligned_cols=86 Identities=27% Similarity=0.336 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC----------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC--
Q 006562 397 YASAISIFDQILKEDPMYPEALIGRGTARAFQRE----------LEAAISDFTEAIQSNPSAGEAWKRRGQARAALGE-- 464 (640)
Q Consensus 397 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-- 464 (640)
|+.|.+.++.....+|.+++.++.-|.++..+.+ +++|+.-|++++.++|+..++++.+|.+|...+.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 5667777777777777777777777666655432 4556666666677777777777777766665432
Q ss_pred ---------HHHHHHHHHHHHHhCCCC
Q 006562 465 ---------SVEAIQDLSKALEFEPNS 482 (640)
Q Consensus 465 ---------~~~A~~~~~~al~~~p~~ 482 (640)
|++|..+|+++...+|++
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~n 113 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNN 113 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 344444444444444444
No 219
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.12 E-value=0.00018 Score=69.17 Aligned_cols=133 Identities=15% Similarity=0.054 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 006562 417 ALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAA-LGESVEAIQDLSKALEFEPNSADILHERGIVNFK 495 (640)
Q Consensus 417 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 495 (640)
+|..+.....+.+..+.|...|.++.+..+....+|...|.+.+. .++.+.|..+|+.+++..|.+...|......+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 344444444444445555555555553333344455555555444 2333335555555555555555555555555555
Q ss_pred cCCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHccCcc
Q 006562 496 FKDFNAAVEDLSACVKLDKENK---SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549 (640)
Q Consensus 496 ~~~~~~A~~~~~~al~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 549 (640)
.|+.+.|...|++++..-+... .+|......-...|+.+.......++.+..|.
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 5555555555555554443332 33444444444444444444444444444443
No 220
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.10 E-value=0.00039 Score=68.58 Aligned_cols=119 Identities=18% Similarity=0.135 Sum_probs=75.2
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc--------------------
Q 006562 389 IAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA-------------------- 448 (640)
Q Consensus 389 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------------------- 448 (640)
....+..+.+.-++.-.++++.+|+.+.++..+|.-.. .-..+|..+++++++.....
T Consensus 176 q~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEeA--~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~R 253 (539)
T PF04184_consen 176 QKAWRERNPQARIKAAKEALEINPDCADAYILLAEEEA--STIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRR 253 (539)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccccc--cCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhcc
Confidence 34566788999999999999999999999888876432 23567777777776532110
Q ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006562 449 -----GEAWKRRGQARAALGESVEAIQDLSKALEFEPN--SADILHERGIVNFKFKDFNAAVEDLSAC 509 (640)
Q Consensus 449 -----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~a 509 (640)
..+...+|.+..+.|+.++|++.++..++..|. +..++.++..++...+.|.++...+.+-
T Consensus 254 dt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 254 DTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred ccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 123344556666666666666666666655543 2335555666666666666665555553
No 221
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.09 E-value=0.0034 Score=55.60 Aligned_cols=170 Identities=13% Similarity=0.112 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhC-----CC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHH------
Q 006562 383 FRLSRGIAQVNEGKYASAISIFDQILKED-----PM-YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGE------ 450 (640)
Q Consensus 383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-----~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------ 450 (640)
.+..-|..|....++..|-..|.++-+.. .+ ....+...+.||. .++..+|+.++++++++..+-..
T Consensus 36 l~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cyk-k~~~~eAv~cL~~aieIyt~~Grf~~aAk 114 (288)
T KOG1586|consen 36 LYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYK-KVDPEEAVNCLEKAIEIYTDMGRFTMAAK 114 (288)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhh-ccChHHHHHHHHHHHHHHHhhhHHHHHHh
Confidence 33344444555555555555555554321 11 2344455555554 45899999999999988765433
Q ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcH------
Q 006562 451 AWKRRGQARAAL-GESVEAIQDLSKALEFEPNS------ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK------ 517 (640)
Q Consensus 451 ~~~~la~~~~~~-~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~------ 517 (640)
.+..+|.+|..- .++++|+.+|+++-+..... ...+.-.+......++|.+|+..|++.....-+++
T Consensus 115 ~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~ 194 (288)
T KOG1586|consen 115 HHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSA 194 (288)
T ss_pred hhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHH
Confidence 345788888665 89999999999998876543 22455667777788999999999999887766554
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHH
Q 006562 518 -SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA 553 (640)
Q Consensus 518 -~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 553 (640)
..++.-|.+++...+.-.+...+++....+|.....
T Consensus 195 KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 195 KDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred HHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence 344556788888888888889999999999987443
No 222
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.08 E-value=7.8e-06 Score=53.24 Aligned_cols=42 Identities=24% Similarity=0.158 Sum_probs=36.5
Q ss_pred hHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHH
Q 006562 70 QDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGC 111 (640)
Q Consensus 70 ~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~ 111 (640)
..+..+|.+|.++|++++|+..++++++.+|+++.++..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 457788899999999999999999999999999999888875
No 223
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.08 E-value=0.00018 Score=69.05 Aligned_cols=134 Identities=13% Similarity=0.100 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 006562 383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAF-QRELEAAISDFTEAIQSNPSAGEAWKRRGQARAA 461 (640)
Q Consensus 383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 461 (640)
+|........+.+..+.|..+|.++++..+....+|...|.+-+. .++.+.|...|+.+++..|.+...|......+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 344455555566667777777777775555556777777777555 4555557777777777777777777777777777
Q ss_pred cCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 006562 462 LGESVEAIQDLSKALEFEPNSA---DILHERGIVNFKFKDFNAAVEDLSACVKLDKEN 516 (640)
Q Consensus 462 ~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 516 (640)
.++.+.|..+|++++..-|... .+|......-...|+.+...+..+++.+..|.+
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 7777777777777777655443 466666677777777777777777777776663
No 224
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.06 E-value=0.0011 Score=65.43 Aligned_cols=167 Identities=15% Similarity=0.088 Sum_probs=118.1
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------------------
Q 006562 421 RGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPN------------------- 481 (640)
Q Consensus 421 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------------------- 481 (640)
+..-..+..+...-++...+|++++|+.+++|..+|.-. ..-..+|..+++++++....
T Consensus 174 IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~ 251 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWH 251 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhh
Confidence 334445667888899999999999999999998887532 23456677777776653210
Q ss_pred --C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc-CcccHH
Q 006562 482 --S----ADILHERGIVNFKFKDFNAAVEDLSACVKLDKE--NKSAYTYLGLALSSIGEYKKAEEAHLKAIQL-DRNFLE 552 (640)
Q Consensus 482 --~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-~~~~~~ 552 (640)
+ ..+...+|.+..+.|+.++|++.++..++..|. +..++.++..++...+.|.++...+.+.-++ -|.+..
T Consensus 252 ~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAt 331 (539)
T PF04184_consen 252 RRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSAT 331 (539)
T ss_pred ccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHH
Confidence 0 235567889999999999999999999988765 4568888999999999999999988886433 255555
Q ss_pred HHHHHHHHHHH-hcC---------------HHHHHHHHHHHHHhCCCChHHHH
Q 006562 553 AWGHLTQFYQD-LAN---------------SEKALECLQQVLYIDKRFSKAYH 589 (640)
Q Consensus 553 ~~~~la~~~~~-~g~---------------~~~A~~~~~~al~~~~~~~~~~~ 589 (640)
..+.-+.+-.+ .++ -..|++.+.++++.+|..+..+.
T Consensus 332 i~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLL 384 (539)
T PF04184_consen 332 ICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLL 384 (539)
T ss_pred HHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhh
Confidence 55544443322 111 13467888899988887665443
No 225
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=98.06 E-value=0.0031 Score=61.63 Aligned_cols=103 Identities=15% Similarity=0.085 Sum_probs=55.2
Q ss_pred cccHHHHHHHHHHHHHcCChHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---ccCHHHHHHHHHHH-HHhCCCcH
Q 006562 378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKE----DPMYPEALIGRGTARAF---QRELEAAISDFTEA-IQSNPSAG 449 (640)
Q Consensus 378 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~----~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~a-l~~~p~~~ 449 (640)
-.+++....+-..|....+|+.=+++.+.+-.. -++.+.+.+..|.++.+ .|+.++|+..+..+ ....+.++
T Consensus 138 ~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~ 217 (374)
T PF13281_consen 138 LLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDP 217 (374)
T ss_pred hcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCCh
Confidence 344455555555566666666666666555444 23345555556666655 56666666666663 33344455
Q ss_pred HHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCC
Q 006562 450 EAWKRRGQARAAL---------GESVEAIQDLSKALEFEP 480 (640)
Q Consensus 450 ~~~~~la~~~~~~---------~~~~~A~~~~~~al~~~p 480 (640)
+.+..+|.+|-.. ...++|+.+|.++.+..|
T Consensus 218 d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~ 257 (374)
T PF13281_consen 218 DTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEP 257 (374)
T ss_pred HHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCc
Confidence 6666666655321 124445555555555553
No 226
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.06 E-value=0.0037 Score=55.74 Aligned_cols=194 Identities=14% Similarity=0.085 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CCcH
Q 006562 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY------PEALIGRGTARAFQRELEAAISDFTEAIQSN-----PSAG 449 (640)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~ 449 (640)
...+..-+..+....+|++|...+.++.+-..++ +.++-..+.+......+.++..+++++.... |+.+
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtA 110 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTA 110 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchH
Confidence 4455666677777889999999988888644433 2345556666667777888888888886553 2222
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------CCCcH
Q 006562 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNS------ADILHERGIVNFKFKDFNAAVEDLSACVKL------DKENK 517 (640)
Q Consensus 450 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~~~~~ 517 (640)
..-...+--....-++++|+..|++++.+...+ .+.+...++++.+...+.+|-..+.+-... .+...
T Consensus 111 AmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~ 190 (308)
T KOG1585|consen 111 AMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQC 190 (308)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHH
Confidence 222223333445567788888888877664433 234555667777777777776666554322 22333
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccC----cccHHHHHHHHHHHHHhcCHHHHHHHHH
Q 006562 518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLD----RNFLEAWGHLTQFYQDLANSEKALECLQ 575 (640)
Q Consensus 518 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~ 575 (640)
..+.....++....+|..|..+++...++. +++..+..+|-..| ..|+.++....+.
T Consensus 191 k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 191 KAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 444445555556667778877777765542 33444555544443 4566666555443
No 227
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.02 E-value=9e-06 Score=49.62 Aligned_cols=33 Identities=27% Similarity=0.315 Sum_probs=22.1
Q ss_pred hHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCc
Q 006562 70 QDICNRAFCYSQLELHKHVIRDCDKALQLDPTL 102 (640)
Q Consensus 70 ~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~ 102 (640)
..|+++|.+|..+|++++|+..|++||+++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 346677777777777777777777777777753
No 228
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.00 E-value=1.4e-05 Score=52.05 Aligned_cols=42 Identities=26% Similarity=0.275 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHH
Q 006562 586 KAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS 627 (640)
Q Consensus 586 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 627 (640)
.++..+|.+|...|++++|+..|+++++.+|+++.+|..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 456666666666666666666666666666666666666654
No 229
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.97 E-value=0.0013 Score=64.16 Aligned_cols=181 Identities=14% Similarity=0.007 Sum_probs=97.7
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHH---cCCHHHHHHHHHH-HHHhCCCCHHH
Q 006562 414 YPEALIGRGTARAFQRELEAAISDFTEAIQS----NPSAGEAWKRRGQARAA---LGESVEAIQDLSK-ALEFEPNSADI 485 (640)
Q Consensus 414 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~---~~~~~~A~~~~~~-al~~~p~~~~~ 485 (640)
++.+...+-.+|....+|+.-+...+..-.. .++.+.+.+.+|.++.+ .|+.++|+..+.. .....+.+++.
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 3455666666777777777777777766554 33455666677777776 7777777777777 44445566777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhc
Q 006562 486 LHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565 (640)
Q Consensus 486 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g 565 (640)
+..+|.+|-..- ++....+. ...++|+.+|.++++..|+. ..-.+++.++...|
T Consensus 220 ~gL~GRIyKD~~------------~~s~~~d~-------------~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g 273 (374)
T PF13281_consen 220 LGLLGRIYKDLF------------LESNFTDR-------------ESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAG 273 (374)
T ss_pred HHHHHHHHHHHH------------HHcCccch-------------HHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcC
Confidence 777777764320 00000000 11445555555555555432 12223333333333
Q ss_pred CHHHHHHHHHHHH--------H----hCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHH
Q 006562 566 NSEKALECLQQVL--------Y----IDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE 620 (640)
Q Consensus 566 ~~~~A~~~~~~al--------~----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 620 (640)
...+...-+++.. + ..-.+.+.+..++.+..-.|++++|.+.+++++.+.|....
T Consensus 274 ~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~ 340 (374)
T PF13281_consen 274 HDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWE 340 (374)
T ss_pred CcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchh
Confidence 3222111111110 0 01133445555666677778888888888888777766543
No 230
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=0.00014 Score=64.36 Aligned_cols=95 Identities=20% Similarity=0.170 Sum_probs=87.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 006562 384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG 463 (640)
Q Consensus 384 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 463 (640)
+-..|..++....|..|+..|.+++..+|..+..+.+.+.||++..+++.+.....+++++.|+....++.+|.......
T Consensus 13 lkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~ 92 (284)
T KOG4642|consen 13 LKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSK 92 (284)
T ss_pred HHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhc
Confidence 34567778888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHh
Q 006562 464 ESVEAIQDLSKALEF 478 (640)
Q Consensus 464 ~~~~A~~~~~~al~~ 478 (640)
.|++|+..+.++..+
T Consensus 93 ~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 93 GYDEAIKVLQRAYSL 107 (284)
T ss_pred cccHHHHHHHHHHHH
Confidence 999999999999665
No 231
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.88 E-value=0.0025 Score=56.77 Aligned_cols=196 Identities=16% Similarity=0.114 Sum_probs=129.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCH
Q 006562 415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA------GEAWKRRGQARAALGESVEAIQDLSKALEFE-----PNSA 483 (640)
Q Consensus 415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----p~~~ 483 (640)
...+..-+.+|....++++|..++.++.+-..++ +.++-..+.+...+..+.++..+++++..+. |+..
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtA 110 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTA 110 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchH
Confidence 4567777888888999999999999998655443 2345556667777888889999999887763 3323
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHcc------CcccH
Q 006562 484 DILHERGIVNFKFKDFNAAVEDLSACVKLDKEN------KSAYTYLGLALSSIGEYKKAEEAHLKAIQL------DRNFL 551 (640)
Q Consensus 484 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~------~~~~~ 551 (640)
..-...+-=....-++++|+.+|++++.+-..+ .+.+-..++++.+...+++|-..+.+-... .++..
T Consensus 111 AmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~ 190 (308)
T KOG1585|consen 111 AMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQC 190 (308)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHH
Confidence 333334444556678888999888888764433 244556678888888888887777664432 23333
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----CCChHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 006562 552 EAWGHLTQFYQDLANSEKALECLQQVLYID----KRFSKAYHLRGLLLHGLGQHKKAIKDLSSG 611 (640)
Q Consensus 552 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 611 (640)
..+.....+|....+|..|...++..-+.. |++..+..+|-.. +..|+.++....+..-
T Consensus 191 k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~a-yd~gD~E~~~kvl~sp 253 (308)
T KOG1585|consen 191 KAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTA-YDEGDIEEIKKVLSSP 253 (308)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHH-hccCCHHHHHHHHcCh
Confidence 445555566666778888888888765542 2334444444433 3567777766666543
No 232
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.88 E-value=0.033 Score=54.97 Aligned_cols=208 Identities=17% Similarity=0.159 Sum_probs=145.9
Q ss_pred HccCHHHHHHHHHHHHHhCCC------cHH--------HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC-------C
Q 006562 427 FQRELEAAISDFTEAIQSNPS------AGE--------AWKRRGQARAALGESVEAIQDLSKALEF---EPN-------S 482 (640)
Q Consensus 427 ~~g~~~~A~~~~~~al~~~p~------~~~--------~~~~la~~~~~~~~~~~A~~~~~~al~~---~p~-------~ 482 (640)
..|-+++|.++-++++..... ... .+-.+..+-.-.|++.+|++....+... .|. .
T Consensus 287 ~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~ 366 (629)
T KOG2300|consen 287 PAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHE 366 (629)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhH
Confidence 457788888888888754221 111 2334566667789999999888777665 343 2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-c--HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccc-------HH
Q 006562 483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKE-N--KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF-------LE 552 (640)
Q Consensus 483 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~--~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-------~~ 552 (640)
+.++..+|......|.++.|...|..+.+.-.. + .....++|.+|...|+-+.-.+.++..-..+... ..
T Consensus 367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~ 446 (629)
T KOG2300|consen 367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEAS 446 (629)
T ss_pred HHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHH
Confidence 457788888889999999999999999887543 2 2445678999999888666555555433222111 45
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHhcCCHHHHHHHHHHhhcc---CCCCHHHHH
Q 006562 553 AWGHLTQFYQDLANSEKALECLQQVLYIDKR------FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI---DPSNIECLY 623 (640)
Q Consensus 553 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~ 623 (640)
+++..|...+.++++.+|...+.+.++.... ....+..++.+..-.|+..++.+...-++++ -|+.+.-++
T Consensus 447 ~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLw 526 (629)
T KOG2300|consen 447 ILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLW 526 (629)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHH
Confidence 6777888889999999999999999877521 1235677899999999999999888877754 455543333
Q ss_pred ---HHHHHHHHcCC
Q 006562 624 ---LRASCYHAIGE 634 (640)
Q Consensus 624 ---~la~~~~~~g~ 634 (640)
.+-.++...|+
T Consensus 527 s~si~~~L~~a~g~ 540 (629)
T KOG2300|consen 527 SSSILTDLYQALGE 540 (629)
T ss_pred HHHHHHHHHHHhCc
Confidence 24455666665
No 233
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=0.0036 Score=56.46 Aligned_cols=235 Identities=17% Similarity=0.187 Sum_probs=174.7
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH-HH
Q 006562 391 QVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQR-ELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESV-EA 468 (640)
Q Consensus 391 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~-~A 468 (640)
+.....-..|+.+-..++.++|.+..+|...-.++..++ +..+-++++.++++.+|++-.+|...-.+....|++. .-
T Consensus 53 ~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rE 132 (318)
T KOG0530|consen 53 IAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRE 132 (318)
T ss_pred HhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccch
Confidence 344566789999999999999999999888777776654 6778899999999999999999999988888899888 78
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cC-----CHHHHHHHHHH
Q 006562 469 IQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS-IG-----EYKKAEEAHLK 542 (640)
Q Consensus 469 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~g-----~~~~A~~~~~~ 542 (640)
++..+.++..+.++..+|...-.+....+.++.-+.+..+.++.+-.+-.+|...-.+... .| ..+.-+.+..+
T Consensus 133 Lef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~ 212 (318)
T KOG0530|consen 133 LEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKD 212 (318)
T ss_pred HHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999887666666543222222 11 23345677788
Q ss_pred HHccCcccHHHHHHHHHHHHH-hc--CHHHHHHHHHHHH-HhCCCChHHHHHHHHHHH------hcCCHH---HHHHHHH
Q 006562 543 AIQLDRNFLEAWGHLTQFYQD-LA--NSEKALECLQQVL-YIDKRFSKAYHLRGLLLH------GLGQHK---KAIKDLS 609 (640)
Q Consensus 543 a~~~~~~~~~~~~~la~~~~~-~g--~~~~A~~~~~~al-~~~~~~~~~~~~la~~~~------~~g~~~---~A~~~~~ 609 (640)
.+...|++..+|..|.-++.. .| .+.+-........ .....+|..+.-+..+|. ..+.-+ +|...++
T Consensus 213 ~I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~~~sP~lla~l~d~~~e~~l~~~~~~~~~a~~a~~ly~ 292 (318)
T KOG0530|consen 213 KILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLYLQLPKRSPFLLAFLLDLYAEDALAYKSSAEELARKAVKLYE 292 (318)
T ss_pred HHHhCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHhhccCCCChhHHHHHHHHHHHHHhhccccchHHHHHHHHHHH
Confidence 889999999999999888876 44 2344444444444 333355666655655552 233333 5666666
Q ss_pred Hhh-ccCCCCHHHHHHH
Q 006562 610 SGL-GIDPSNIECLYLR 625 (640)
Q Consensus 610 ~al-~~~p~~~~~~~~l 625 (640)
..- +.+|-....|...
T Consensus 293 ~La~~~DpiR~nyW~~~ 309 (318)
T KOG0530|consen 293 DLAIKVDPIRKNYWRHK 309 (318)
T ss_pred HHhhccCcHHHHHHHHH
Confidence 654 6777665555443
No 234
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.82 E-value=4.5e-05 Score=46.45 Aligned_cols=33 Identities=33% Similarity=0.441 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccC
Q 006562 103 LQAYILKGCAFSALGRKEEALSVWEKGYEHALH 135 (640)
Q Consensus 103 ~~a~~~~g~~y~~~g~~~~A~~~~~~al~~~~~ 135 (640)
+++|+.+|.+|..+|++++|+.+|++|++++|+
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 468999999999999999999999999888775
No 235
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.00072 Score=60.09 Aligned_cols=104 Identities=26% Similarity=0.334 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHH--------hCCCC----------HHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 006562 381 VDFRLSRGIAQVNEGKYASAISIFDQILK--------EDPMY----------PEALIGRGTARAFQRELEAAISDFTEAI 442 (640)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~--------~~~~~----------~~~~~~la~~~~~~g~~~~A~~~~~~al 442 (640)
+..+...|..++..|+|.+|...|+.++. ..|.. ...+.+.+.|+...|+|-++++....++
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 56777889999999999999999998864 23443 2456677788888888888888888888
Q ss_pred HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 006562 443 QSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSAD 484 (640)
Q Consensus 443 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 484 (640)
...|.+..+++..|.+....-+.++|...|.++++++|.-..
T Consensus 258 ~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas 299 (329)
T KOG0545|consen 258 RHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS 299 (329)
T ss_pred hcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence 888888888888888888888888888888888888775433
No 236
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.76 E-value=2.5e-05 Score=47.23 Aligned_cols=32 Identities=28% Similarity=0.509 Sum_probs=19.7
Q ss_pred HHHhhccCCCCHHHHHHHHHHHHHcCCccccc
Q 006562 608 LSSGLGIDPSNIECLYLRASCYHAIGEYREAV 639 (640)
Q Consensus 608 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~Al 639 (640)
|+++++++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45566666666666666666666666666654
No 237
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.75 E-value=5.3e-05 Score=74.19 Aligned_cols=110 Identities=25% Similarity=0.341 Sum_probs=100.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 006562 384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG 463 (640)
Q Consensus 384 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 463 (640)
.-..+...+..++|+.|+..|.++++++|+.+..+-..+..+...+++..|+..+.++++.+|....+|+..|.+....+
T Consensus 7 ~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 7 LKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred hhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence 34567778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006562 464 ESVEAIQDLSKALEFEPNSADILHERGIVN 493 (640)
Q Consensus 464 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 493 (640)
.+.+|...|+....+.|+++.+...+..+-
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHHHHHHHHHH
Confidence 999999999999999999988877665553
No 238
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.70 E-value=7.8e-05 Score=45.39 Aligned_cols=30 Identities=33% Similarity=0.361 Sum_probs=15.9
Q ss_pred HHhHHHHHHhhhcHHHHHHHHHHHHHcCCC
Q 006562 72 ICNRAFCYSQLELHKHVIRDCDKALQLDPT 101 (640)
Q Consensus 72 ~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~ 101 (640)
++.+|.+++++|++++|+..++++++++|+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 445555555555555555555555555554
No 239
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.0032 Score=58.25 Aligned_cols=149 Identities=18% Similarity=0.164 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHH--HH
Q 006562 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG--QA 458 (640)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la--~~ 458 (640)
.+.-+..+......|++.+|...|..++...|.+..+...++.|+...|+.+.|...+...-....... .....+ ..
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~-~~~l~a~i~l 212 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKA-AHGLQAQIEL 212 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhH-HHHHHHHHHH
Confidence 445566788889999999999999999999999999999999999999999999888776432222211 111111 22
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHcC
Q 006562 459 RAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE--NKSAYTYLGLALSSIG 531 (640)
Q Consensus 459 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~g 531 (640)
+.+.....+ ...+++.+..+|++.++.+.++..+...|+.+.|.+.+-..++.+.. +..+...+-.++...|
T Consensus 213 l~qaa~~~~-~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 213 LEQAAATPE-IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHhcCCC-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 222222222 23456667788999999999999999999999999999888877543 3444444444444444
No 240
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.68 E-value=0.017 Score=58.11 Aligned_cols=116 Identities=16% Similarity=0.159 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCc----ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-C---------
Q 006562 517 KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR----NFLEAWGHLTQFYQDLANSEKALECLQQVLYID-K--------- 582 (640)
Q Consensus 517 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~--------- 582 (640)
...+...+.+....|.++.|...+.++....+ ..+.+.+..+.++...|+..+|+..++..+... .
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~ 225 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNA 225 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHH
Confidence 34455555555555555555555555554331 124444555555555555555555555444410 0
Q ss_pred ------------------------CChHHHHHHHHHHHhc------CCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHc
Q 006562 583 ------------------------RFSKAYHLRGLLLHGL------GQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAI 632 (640)
Q Consensus 583 ------------------------~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 632 (640)
....++..+|...... +..+++...|..+++.+|+...+|+.+|..+...
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 226 ELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKL 305 (352)
T ss_pred HHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHH
Confidence 0123455666666666 7778888888888888888888888777776554
No 241
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.68 E-value=0.00011 Score=44.72 Aligned_cols=33 Identities=33% Similarity=0.459 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccC
Q 006562 103 LQAYILKGCAFSALGRKEEALSVWEKGYEHALH 135 (640)
Q Consensus 103 ~~a~~~~g~~y~~~g~~~~A~~~~~~al~~~~~ 135 (640)
+++++.+|.+|..+|++++|+.+|++++++.|+
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 468999999999999999999999999888875
No 242
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.66 E-value=0.0032 Score=63.13 Aligned_cols=102 Identities=16% Similarity=0.074 Sum_probs=90.1
Q ss_pred HHcCCHHHHHHHHHHHHccCccc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHH
Q 006562 528 SSIGEYKKAEEAHLKAIQLDRNF-LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIK 606 (640)
Q Consensus 528 ~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~ 606 (640)
...|+...|+.++..++...|.. .....++|.+...-|-.-.|-.++.+++.+....|..++.+|.++..+.+.+.|++
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHH
Confidence 34788999999999999998865 34567899999999999999999999999998889999999999999999999999
Q ss_pred HHHHhhccCCCCHHHHHHHHHHH
Q 006562 607 DLSSGLGIDPSNIECLYLRASCY 629 (640)
Q Consensus 607 ~~~~al~~~p~~~~~~~~la~~~ 629 (640)
.|+.+++.+|+++..-..|-.+-
T Consensus 698 ~~~~a~~~~~~~~~~~~~l~~i~ 720 (886)
T KOG4507|consen 698 AFRQALKLTTKCPECENSLKLIR 720 (886)
T ss_pred HHHHHHhcCCCChhhHHHHHHHH
Confidence 99999999999987766554443
No 243
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=97.64 E-value=0.00018 Score=70.79 Aligned_cols=101 Identities=23% Similarity=0.075 Sum_probs=85.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHcccCch-hHHHhHHHHHHhh---hcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcC
Q 006562 42 ELAKLCSLRNWSKAIRILDSLLAQSYEI-QDICNRAFCYSQL---ELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALG 117 (640)
Q Consensus 42 ~~~~~~~~~~y~~Ai~~y~~ai~~~~~~-~~~~~~A~~~~~~---g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g 117 (640)
.....|-.+.+..||..|.+++...|.. ..|.|||.++++- |+---|+.+|..|+.++|...+||++++.++..++
T Consensus 380 egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~ 459 (758)
T KOG1310|consen 380 EGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELT 459 (758)
T ss_pred hccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHh
Confidence 3445577788999999999999998544 5589999999886 68889999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhccCChHHHHH
Q 006562 118 RKEEALSVWEKGYEHALHQSADLKQ 142 (640)
Q Consensus 118 ~~~~A~~~~~~al~~~~~~~~~~~~ 142 (640)
++.+|+.+...+....|...+...+
T Consensus 460 r~~eal~~~~alq~~~Ptd~a~~~~ 484 (758)
T KOG1310|consen 460 RYLEALSCHWALQMSFPTDVARQNF 484 (758)
T ss_pred hHHHhhhhHHHHhhcCchhhhhhhh
Confidence 9999999888777777755443333
No 244
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.58 E-value=0.13 Score=53.44 Aligned_cols=36 Identities=14% Similarity=0.251 Sum_probs=30.2
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCC
Q 006562 583 RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN 618 (640)
Q Consensus 583 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 618 (640)
..+.++..++..+...|++++|-+.|-.+++++.-+
T Consensus 993 k~~~vhlk~a~~ledegk~edaskhyveaiklntyn 1028 (1636)
T KOG3616|consen 993 KMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYN 1028 (1636)
T ss_pred cCccchhHHhhhhhhccchhhhhHhhHHHhhccccc
Confidence 456788889999999999999999999999886543
No 245
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.57 E-value=0.018 Score=61.23 Aligned_cols=238 Identities=16% Similarity=0.045 Sum_probs=144.6
Q ss_pred HHHHHHHHHHHHHc-----CChHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcc-----CHHHHHHHHHHHHHhC
Q 006562 381 VDFRLSRGIAQVNE-----GKYASAISIFDQILKE-----DPMYPEALIGRGTARAFQR-----ELEAAISDFTEAIQSN 445 (640)
Q Consensus 381 ~~~~~~~a~~~~~~-----g~~~~A~~~~~~~l~~-----~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~ 445 (640)
......+|.+++.- .|.+.|+.+|..+... ....+.+.+.+|.+|.... ++..|+.++.++-...
T Consensus 244 ~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g 323 (552)
T KOG1550|consen 244 SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG 323 (552)
T ss_pred hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC
Confidence 45555666666554 5889999999988761 1125667888999998743 7788999999998764
Q ss_pred CCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHhCCCcHH
Q 006562 446 PSAGEAWKRRGQARAALG---ESVEAIQDLSKALEFEPNSADILHERGIVNFKF----KDFNAAVEDLSACVKLDKENKS 518 (640)
Q Consensus 446 p~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----~~~~~A~~~~~~al~~~~~~~~ 518 (640)
++++.+.+|.++..-. ++..|..+|..+.... +..+.+.++.+|..- .+...|..++.++.+.+ ++.
T Consensus 324 --~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G--~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~ 397 (552)
T KOG1550|consen 324 --NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG--HILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPS 397 (552)
T ss_pred --CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--Chh
Confidence 5677888898887765 5789999999988764 677888888888653 47899999999999887 445
Q ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHccCcccHH---HHH-HHHHHHHHh----cCHHHHHHHHHHHHHhCCCChHHHH
Q 006562 519 AYTYLGLALSSI-GEYKKAEEAHLKAIQLDRNFLE---AWG-HLTQFYQDL----ANSEKALECLQQVLYIDKRFSKAYH 589 (640)
Q Consensus 519 ~~~~la~~~~~~-g~~~~A~~~~~~a~~~~~~~~~---~~~-~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~ 589 (640)
+.+.++..+... +.++.+...+.......-..+. ++. ......... .+...+...+.++. ...++.+..
T Consensus 398 A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~--~~g~~~a~~ 475 (552)
T KOG1550|consen 398 AAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAA--AQGNADAIL 475 (552)
T ss_pred hHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHH--hccCHHHHh
Confidence 555555554433 5655555444443332211110 000 000001111 12333444444432 223455555
Q ss_pred HHHHHHHhc----CCHHHHHHHHHHhhccCCCCHHHHHHHHHHH
Q 006562 590 LRGLLLHGL----GQHKKAIKDLSSGLGIDPSNIECLYLRASCY 629 (640)
Q Consensus 590 ~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 629 (640)
.+|.+|..- .+++.|...|.++.... ....+++|.++
T Consensus 476 ~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~ 516 (552)
T KOG1550|consen 476 KLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMH 516 (552)
T ss_pred hhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHH
Confidence 555555443 23556666665555444 45555555544
No 246
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.54 E-value=0.039 Score=55.49 Aligned_cols=137 Identities=18% Similarity=0.195 Sum_probs=98.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc-C--c-----
Q 006562 481 NSADILHERGIVNFKFKDFNAAVEDLSACVKLDK----ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL-D--R----- 548 (640)
Q Consensus 481 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-~--~----- 548 (640)
.....+...+.+..+.|.++.|...+.++....+ ..+.+.+..+.++...|+..+|+..++..+.. . +
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 3455677778888888888888888887776542 14566777778888888888888777776661 0 0
Q ss_pred --------------------------ccHHHHHHHHHHHHHh------cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 006562 549 --------------------------NFLEAWGHLTQFYQDL------ANSEKALECLQQVLYIDKRFSKAYHLRGLLLH 596 (640)
Q Consensus 549 --------------------------~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 596 (640)
....++..+|...... +..++++..|..+++.+|....+|+..|..+.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~ 303 (352)
T PF02259_consen 224 NAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFND 303 (352)
T ss_pred HHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHH
Confidence 0134556667766666 88899999999999999999999998888765
Q ss_pred hcCC-----------------HHHHHHHHHHhhccCCC
Q 006562 597 GLGQ-----------------HKKAIKDLSSGLGIDPS 617 (640)
Q Consensus 597 ~~g~-----------------~~~A~~~~~~al~~~p~ 617 (640)
..=. ...|+..|-+++...+.
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 304 KLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 4311 13477788888888776
No 247
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.53 E-value=0.0059 Score=63.24 Aligned_cols=156 Identities=20% Similarity=0.119 Sum_probs=114.2
Q ss_pred HHHcCChHHHHHHHHHHHHhCCC-CHHHHHH-----HHH-HH--H--HccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 006562 391 QVNEGKYASAISIFDQILKEDPM-YPEALIG-----RGT-AR--A--FQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR 459 (640)
Q Consensus 391 ~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~-----la~-~~--~--~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 459 (640)
.--.||-+.++..+.++.+...- .+-+-.. ... .. . ...+.+.|...+....+..|+..-..+..|+++
T Consensus 198 vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~ 277 (468)
T PF10300_consen 198 VGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLE 277 (468)
T ss_pred cCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 33468999999999998773221 1211111 111 11 1 234678899999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHcCCH-
Q 006562 460 AALGESVEAIQDLSKALEFEPNS----ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK-SAYTYLGLALSSIGEY- 533 (640)
Q Consensus 460 ~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~la~~~~~~g~~- 533 (640)
...|+.++|++.|++++.....- .-.++.++.++..+.+|++|..++.+..+.+.-.. ...+..|.++...|+.
T Consensus 278 ~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~ 357 (468)
T PF10300_consen 278 RLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREE 357 (468)
T ss_pred HHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccch
Confidence 99999999999999888533222 23678899999999999999999999998766543 3445568888888988
Q ss_pred ------HHHHHHHHHHHcc
Q 006562 534 ------KKAEEAHLKAIQL 546 (640)
Q Consensus 534 ------~~A~~~~~~a~~~ 546 (640)
++|...|.++-..
T Consensus 358 ~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 358 EAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred hhhhhHHHHHHHHHHHHHH
Confidence 7777777776543
No 248
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.49 E-value=0.0077 Score=62.36 Aligned_cols=117 Identities=19% Similarity=0.052 Sum_probs=76.0
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccc----HHHHHHHHHHHHHhcCHHHHHH
Q 006562 497 KDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF----LEAWGHLTQFYQDLANSEKALE 572 (640)
Q Consensus 497 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~g~~~~A~~ 572 (640)
...+.|.+.+.......|+..-.++..|+++...|+.++|+..|++++...... .-.++.++.++..+++|++|..
T Consensus 247 ~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~ 326 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE 326 (468)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence 355667777777777777777777777777777777777777777666432222 2345667777777777777777
Q ss_pred HHHHHHHhCCC-ChHHHHHHHHHHHhcCCH-------HHHHHHHHHhhc
Q 006562 573 CLQQVLYIDKR-FSKAYHLRGLLLHGLGQH-------KKAIKDLSSGLG 613 (640)
Q Consensus 573 ~~~~al~~~~~-~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~ 613 (640)
++.+..+.+.- .....+..|.++...|+. ++|...|.++-.
T Consensus 327 ~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 327 YFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 77777765442 233445566677777776 666666666543
No 249
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.49 E-value=0.16 Score=52.00 Aligned_cols=270 Identities=11% Similarity=0.060 Sum_probs=179.7
Q ss_pred HHhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHccCHHHHHHHHHHHHHhCCC
Q 006562 369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGT-ARAFQRELEAAISDFTEAIQSNPS 447 (640)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p~ 447 (640)
.+...+...|.-..+|-..|..-...|..+.+...|++++..-|.....|...-. +--..|+.+.-...|++|......
T Consensus 67 ~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~ 146 (577)
T KOG1258|consen 67 VYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGL 146 (577)
T ss_pred HHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhccc
Confidence 4556667788888889899999999999999999999999988877777765433 333456777777778877765543
Q ss_pred c---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------------------HHHHHHH------------
Q 006562 448 A---GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA----------------------DILHERG------------ 490 (640)
Q Consensus 448 ~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~----------------------~~~~~la------------ 490 (640)
+ ...|-..-..-...+++..-...|++.++..-... +....+.
T Consensus 147 dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~ 226 (577)
T KOG1258|consen 147 DFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHS 226 (577)
T ss_pred chhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccc
Confidence 2 22232222223344455555555555443211100 0000000
Q ss_pred ------------------------------------HHHHhcCCHHHHHHHHHHHHHh-----CC---CcHHHHHHHHHH
Q 006562 491 ------------------------------------IVNFKFKDFNAAVEDLSACVKL-----DK---ENKSAYTYLGLA 526 (640)
Q Consensus 491 ------------------------------------~~~~~~~~~~~A~~~~~~al~~-----~~---~~~~~~~~la~~ 526 (640)
.++.......+.+..++..+.. .| .....|......
T Consensus 227 ~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf 306 (577)
T KOG1258|consen 227 QEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDF 306 (577)
T ss_pred cChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhh
Confidence 0000111111111122222211 11 123456666777
Q ss_pred HHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHhcCCHHHHH
Q 006562 527 LSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI-DKRFSKAYHLRGLLLHGLGQHKKAI 605 (640)
Q Consensus 527 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~la~~~~~~g~~~~A~ 605 (640)
-...|++....-.|++++--.....+.|...+......|+.+-|...+.++.+. .|..+..+..-+.+-...|++..|.
T Consensus 307 ~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~ 386 (577)
T KOG1258|consen 307 EITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAK 386 (577)
T ss_pred hhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHH
Confidence 778899999999999998888888899999999999999999998888887765 4677888888888999999999999
Q ss_pred HHHHHhhccCCCCHHHHHHHHHHHHHcCCcccc
Q 006562 606 KDLSSGLGIDPSNIECLYLRASCYHAIGEYREA 638 (640)
Q Consensus 606 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 638 (640)
..+++..+..|+...+-...+....+.|+.+.+
T Consensus 387 ~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~ 419 (577)
T KOG1258|consen 387 VILQRIESEYPGLVEVVLRKINWERRKGNLEDA 419 (577)
T ss_pred HHHHHHHhhCCchhhhHHHHHhHHHHhcchhhh
Confidence 999999987798887777777777777776654
No 250
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.47 E-value=0.0018 Score=55.93 Aligned_cols=91 Identities=22% Similarity=0.148 Sum_probs=72.9
Q ss_pred HHHhcCCHHHHHHHHHHHHcccCchhH----HHhHHHHHHhhhcHHHHHHHHHHHHHcCCCch-HHHHHHHHHHHHcCCH
Q 006562 45 KLCSLRNWSKAIRILDSLLAQSYEIQD----ICNRAFCYSQLELHKHVIRDCDKALQLDPTLL-QAYILKGCAFSALGRK 119 (640)
Q Consensus 45 ~~~~~~~y~~Ai~~y~~ai~~~~~~~~----~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~-~a~~~~g~~y~~~g~~ 119 (640)
.++..+++++|+..++.++....+... -.++|+..+++|++++|+..++..- ++.+. ..-.++|.++...|+.
T Consensus 98 ~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~--~~~w~~~~~elrGDill~kg~k 175 (207)
T COG2976 98 AEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIK--EESWAAIVAELRGDILLAKGDK 175 (207)
T ss_pred HHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc--cccHHHHHHHHhhhHHHHcCch
Confidence 457889999999999999977643333 4689999999999999999877633 23332 2577899999999999
Q ss_pred HHHHHHHHHHHhhccCCh
Q 006562 120 EEALSVWEKGYEHALHQS 137 (640)
Q Consensus 120 ~~A~~~~~~al~~~~~~~ 137 (640)
++|...|++|++..++.+
T Consensus 176 ~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 176 QEARAAYEKALESDASPA 193 (207)
T ss_pred HHHHHHHHHHHHccCChH
Confidence 999999999988764443
No 251
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.01 Score=54.95 Aligned_cols=59 Identities=19% Similarity=0.151 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006562 416 EALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSK 474 (640)
Q Consensus 416 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 474 (640)
+.-+..+.-....|++.+|...|..++...|++.++...++.+|...|+.+.|...+..
T Consensus 135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~ 193 (304)
T COG3118 135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA 193 (304)
T ss_pred HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence 33444455555566666666666666666666666666666666666666665555443
No 252
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.42 E-value=0.098 Score=55.98 Aligned_cols=233 Identities=15% Similarity=0.033 Sum_probs=155.4
Q ss_pred ccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH
Q 006562 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPM---------YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG 449 (640)
Q Consensus 379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 449 (640)
.++...+..|.......++.+|..++.++...-+. ........|.+....|+.++|+...+.++..-|.+.
T Consensus 413 ~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~ 492 (894)
T COG2909 413 STPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAA 492 (894)
T ss_pred hCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccccc
Confidence 34677788899999999999999999988765433 134455678888899999999999999998887653
Q ss_pred -----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhcCCH--HHHHHHHHHHH----Hh
Q 006562 450 -----EAWKRRGQARAALGESVEAIQDLSKALEFEPNS------ADILHERGIVNFKFKDF--NAAVEDLSACV----KL 512 (640)
Q Consensus 450 -----~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~--~~A~~~~~~al----~~ 512 (640)
.++..+|.+..-.|++++|..+...+.+..... ..+....+.++..+|+. .+....+...- ..
T Consensus 493 ~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q 572 (894)
T COG2909 493 YRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQ 572 (894)
T ss_pred chhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhh
Confidence 456678889999999999999999888773322 22444557788888833 33333333222 22
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc----Cccc--H-HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-
Q 006562 513 DKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL----DRNF--L-EAWGHLTQFYQDLANSEKALECLQQVLYIDKRF- 584 (640)
Q Consensus 513 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~----~~~~--~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~- 584 (640)
.|.........+.++...-+++.+..-....+.. .|.. . .....++.++...|++++|...+..........
T Consensus 573 ~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~ 652 (894)
T COG2909 573 KPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQ 652 (894)
T ss_pred cccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCC
Confidence 2333333333444443333366665555555543 2322 2 223588999999999999999998887653322
Q ss_pred hH------HHHHHHHHHHhcCCHHHHHHHHHHh
Q 006562 585 SK------AYHLRGLLLHGLGQHKKAIKDLSSG 611 (640)
Q Consensus 585 ~~------~~~~la~~~~~~g~~~~A~~~~~~a 611 (640)
+. ++.........+|++..|.....+.
T Consensus 653 ~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 653 YHVDYLAAAYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred CCchHHHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence 11 2222333455689999998888774
No 253
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.40 E-value=0.075 Score=53.37 Aligned_cols=215 Identities=11% Similarity=0.000 Sum_probs=147.1
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHccC--------------HHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcC---
Q 006562 402 SIFDQILKEDPMYPEALIGRGTARAFQRE--------------LEAAISDFTEAIQSNPS-AGEAWKRRGQARAALG--- 463 (640)
Q Consensus 402 ~~~~~~l~~~~~~~~~~~~la~~~~~~g~--------------~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~--- 463 (640)
-.+++++..-+..+++|+..+..+...++ .+++..+|++++..--. +.-.++.++..-...-
T Consensus 266 yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n 345 (656)
T KOG1914|consen 266 YAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDN 345 (656)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccc
Confidence 34667777777778888777666666555 67778888887754322 2333444443322222
Q ss_pred CHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH-HHHcCCHHHHHHHHH
Q 006562 464 ESVEAIQDLSKALEFEPNSA-DILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA-LSSIGEYKKAEEAHL 541 (640)
Q Consensus 464 ~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~ 541 (640)
+++..-..+++++.....++ -++..+...-.+..-...|...|.++-+.......++..-|.+ |...++..-|.+.|+
T Consensus 346 ~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFe 425 (656)
T KOG1914|consen 346 KEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFE 425 (656)
T ss_pred hhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHH
Confidence 36666777777776654443 3555666666667778888888888876544333444444433 445788999999999
Q ss_pred HHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CC-CChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCC
Q 006562 542 KAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI--DK-RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP 616 (640)
Q Consensus 542 ~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 616 (640)
-.+...++.+..-......+...++-..+..+|++++.. .+ .....|..+-..-..-|+...+++.-++-....|
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 999999999888888888888999999999999999876 33 2346777777777788888888877766655544
No 254
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.034 Score=50.43 Aligned_cols=219 Identities=16% Similarity=0.176 Sum_probs=163.8
Q ss_pred cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-CHHHHHHHH
Q 006562 394 EGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG-ESVEAIQDL 472 (640)
Q Consensus 394 ~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~ 472 (640)
..+|.++..+|+.++..+..+ ..|+..-..++..+|.+-.+|...-.++..++ +..+-++++
T Consensus 39 te~fr~~m~YfRAI~~~~E~S-----------------~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l 101 (318)
T KOG0530|consen 39 TEDFRDVMDYFRAIIAKNEKS-----------------PRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYL 101 (318)
T ss_pred chhHHHHHHHHHHHHhccccC-----------------HHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHH
Confidence 356888888888777665544 45667777888999999888887777766554 677889999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccH
Q 006562 473 SKALEFEPNSADILHERGIVNFKFKDFN-AAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL 551 (640)
Q Consensus 473 ~~al~~~p~~~~~~~~la~~~~~~~~~~-~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 551 (640)
...++-+|++..+|...-.+....|++. .-++..+.++..+..+..+|...-.+....+.++.-+.+..+.++.+-.+-
T Consensus 102 ~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NN 181 (318)
T KOG0530|consen 102 DEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNN 181 (318)
T ss_pred HHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhcc
Confidence 9999999999999999999999999988 889999999999999999999999999999999999999999998876666
Q ss_pred HHHHHHHHHHHH-h-----cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh-cC--CHHHHHHHHHHhh-ccCCCCHHH
Q 006562 552 EAWGHLTQFYQD-L-----ANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG-LG--QHKKAIKDLSSGL-GIDPSNIEC 621 (640)
Q Consensus 552 ~~~~~la~~~~~-~-----g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~g--~~~~A~~~~~~al-~~~p~~~~~ 621 (640)
.+|...-.+... . -..+.-+.+..+.+...|.+..+|..+.-++.. .| ...+-.......+ ......+..
T Consensus 182 SAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~~~sP~l 261 (318)
T KOG0530|consen 182 SAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLYLQLPKRSPFL 261 (318)
T ss_pred chhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHhhccCCCChhH
Confidence 666543222111 1 123455677888889999999999998888875 44 2333333333333 333344555
Q ss_pred HHHHHHHH
Q 006562 622 LYLRASCY 629 (640)
Q Consensus 622 ~~~la~~~ 629 (640)
+-.+..+|
T Consensus 262 la~l~d~~ 269 (318)
T KOG0530|consen 262 LAFLLDLY 269 (318)
T ss_pred HHHHHHHH
Confidence 55555555
No 255
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.0034 Score=58.61 Aligned_cols=101 Identities=18% Similarity=0.257 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 006562 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPM----YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG 456 (640)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 456 (640)
+..+-.-|.-|+...+|..|+..|.+.++..-. +...|.+.|-+.+..|+|..|+..+.+++..+|.+..+++.-|
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence 455667899999999999999999999986544 3567889999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC
Q 006562 457 QARAALGESVEAIQDLSKALEFEPN 481 (640)
Q Consensus 457 ~~~~~~~~~~~A~~~~~~al~~~p~ 481 (640)
.+++.+..+.+|..+++..+.++.+
T Consensus 161 kc~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 9999999999999999988776543
No 256
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.31 E-value=0.0053 Score=48.01 Aligned_cols=90 Identities=19% Similarity=0.201 Sum_probs=70.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHccc---CchhH----------HHhHHHHHHhhhcHHHHHHHHHHHHHc-------CCC
Q 006562 42 ELAKLCSLRNWSKAIRILDSLLAQS---YEIQD----------ICNRAFCYSQLELHKHVIRDCDKALQL-------DPT 101 (640)
Q Consensus 42 ~~~~~~~~~~y~~Ai~~y~~ai~~~---~~~~~----------~~~~A~~~~~~g~~~~Ai~~~~~al~~-------~P~ 101 (640)
...+-+..|-|.+|...|.+|.+.. |.-.+ +..++.++..+|+|++++...+++|.. ..+
T Consensus 15 ~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qd 94 (144)
T PF12968_consen 15 DAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQD 94 (144)
T ss_dssp HHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTST
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccc
Confidence 3445688899999999999998876 32222 457888999999999999999999864 222
Q ss_pred ----chHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006562 102 ----LLQAYILKGCAFSALGRKEEALSVWEKGYE 131 (640)
Q Consensus 102 ----~~~a~~~~g~~y~~~g~~~~A~~~~~~al~ 131 (640)
++.+.+.+|.++..+|+.++|+..|+.+-+
T Consensus 95 eGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 95 EGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 566889999999999999999999999943
No 257
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.26 E-value=0.0097 Score=51.00 Aligned_cols=115 Identities=16% Similarity=0.072 Sum_probs=67.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHH-HHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 006562 384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEA-AISDFTEAIQSNPSAGEAWKRRGQARAAL 462 (640)
Q Consensus 384 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~p~~~~~~~~la~~~~~~ 462 (640)
+...|......|+...++..+.+++.+.....-.-..- ..|-. ....+... ...+...++..+...
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~-------~~W~~~~r~~l~~~------~~~~~~~l~~~~~~~ 75 (146)
T PF03704_consen 9 LVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDD-------EEWVEPERERLREL------YLDALERLAEALLEA 75 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT-------STTHHHHHHHHHHH------HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc-------cHHHHHHHHHHHHH------HHHHHHHHHHHHHhc
Confidence 34456666777888899999998887654321000000 01111 11111111 123455667777777
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006562 463 GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVK 511 (640)
Q Consensus 463 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 511 (640)
|++++|+..+++++..+|.+..++..+..++...|+...|+..|+++..
T Consensus 76 ~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 76 GDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp T-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 7888888888888888887777777777888888888777777777644
No 258
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.25 E-value=0.00068 Score=41.13 Aligned_cols=31 Identities=39% Similarity=0.486 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc
Q 006562 104 QAYILKGCAFSALGRKEEALSVWEKGYEHAL 134 (640)
Q Consensus 104 ~a~~~~g~~y~~~g~~~~A~~~~~~al~~~~ 134 (640)
++|+.+|.+|..+|++++|+.+|+++++++|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5788899999999999999999999976665
No 259
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.22 E-value=0.22 Score=47.91 Aligned_cols=221 Identities=12% Similarity=-0.028 Sum_probs=138.8
Q ss_pred HHHcCChHHHHHHHHHHHHhC----CCC----HHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhC----CC---c------
Q 006562 391 QVNEGKYASAISIFDQILKED----PMY----PEALIGRGTARAFQR-ELEAAISDFTEAIQSN----PS---A------ 448 (640)
Q Consensus 391 ~~~~g~~~~A~~~~~~~l~~~----~~~----~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~----p~---~------ 448 (640)
....|+++.|..++.++-... |+. ...++..|......+ +++.|..+++++.+.- +. .
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 457899999999999987654 222 356777888888888 9999999999998772 11 1
Q ss_pred -HHHHHHHHHHHHHcCCHH---HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CcHHHHHHH
Q 006562 449 -GEAWKRRGQARAALGESV---EAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDK-ENKSAYTYL 523 (640)
Q Consensus 449 -~~~~~~la~~~~~~~~~~---~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l 523 (640)
..++..++.+|...+.++ +|...++.+-...|+.+..+...-.+..+.++.+.+.+.+.+++..-+ .....-..+
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l 162 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHH
Confidence 236777888998887654 456666666677788888876767777778999999999999988754 222222222
Q ss_pred HHH-HHHcCCHHHHHHHHHHHHcc--CcccHHHHHHH---HHHHHHhc--C------HHHHHHHHHHHHHh--CCCCh--
Q 006562 524 GLA-LSSIGEYKKAEEAHLKAIQL--DRNFLEAWGHL---TQFYQDLA--N------SEKALECLQQVLYI--DKRFS-- 585 (640)
Q Consensus 524 a~~-~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~l---a~~~~~~g--~------~~~A~~~~~~al~~--~~~~~-- 585 (640)
..+ .........|...+...+.. .|.... |... ..++...+ + .+....++...... .|-.+
T Consensus 163 ~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~-~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~ 241 (278)
T PF08631_consen 163 HHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQ-WLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEA 241 (278)
T ss_pred HHHHHHHhhCcHHHHHHHHHHHHHHhCCChhH-HHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 222 11223445677777666543 222221 3222 22222222 1 22222333322111 12122
Q ss_pred -----HHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 006562 586 -----KAYHLRGLLLHGLGQHKKAIKDLSSGL 612 (640)
Q Consensus 586 -----~~~~~la~~~~~~g~~~~A~~~~~~al 612 (640)
...+..|...++.++|++|..+|+-++
T Consensus 242 ~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 242 ASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 245667888999999999999999766
No 260
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.22 E-value=0.088 Score=56.79 Aligned_cols=209 Identities=20% Similarity=0.144 Sum_probs=103.5
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 006562 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR 459 (640)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 459 (640)
.+..|..+|.+.++.|...+|++.|-++ ++|..+........+.|.|++-+.++.-+.+.... +.+-..+-.+|
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E-~~id~eLi~Ay 1176 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVRE-PYIDSELIFAY 1176 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcC-ccchHHHHHHH
Confidence 3556666666666666666666666543 34555666666666666666666666555443221 11112233334
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 006562 460 AALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEA 539 (640)
Q Consensus 460 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 539 (640)
.+.++..+-.+.+ ..|+...+ -..|.-++..|.|+.|.-.|.. ..-|..++..+..+|+|+.|...
T Consensus 1177 Akt~rl~elE~fi-----~gpN~A~i-~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~ 1242 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFI-----AGPNVANI-QQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDA 1242 (1666)
T ss_pred HHhchHHHHHHHh-----cCCCchhH-HHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHH
Confidence 4444433322221 23333222 2345555555556555554433 23455566666666777766666
Q ss_pred HHHHHccCc-------------------------ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 006562 540 HLKAIQLDR-------------------------NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLL 594 (640)
Q Consensus 540 ~~~a~~~~~-------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~ 594 (640)
.+++-.... -..+-+-.+...|...|-+++-+..++.++.+...+...+..+|.+
T Consensus 1243 aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiL 1322 (1666)
T KOG0985|consen 1243 ARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAIL 1322 (1666)
T ss_pred hhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHH
Confidence 665532100 0112223344445555666666666665555554444455555555
Q ss_pred HHhcCCHHHHHHHHH
Q 006562 595 LHGLGQHKKAIKDLS 609 (640)
Q Consensus 595 ~~~~g~~~~A~~~~~ 609 (640)
|.+- ++++-.++++
T Consensus 1323 Ysky-kp~km~EHl~ 1336 (1666)
T KOG0985|consen 1323 YSKY-KPEKMMEHLK 1336 (1666)
T ss_pred HHhc-CHHHHHHHHH
Confidence 4432 2344444443
No 261
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.22 E-value=0.24 Score=48.25 Aligned_cols=167 Identities=20% Similarity=0.067 Sum_probs=100.9
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----
Q 006562 390 AQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQ----RELEAAISDFTEAIQSNPSAGEAWKRRGQARAA---- 461 (640)
Q Consensus 390 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---- 461 (640)
.....+++..|...+..+-.. ..+.....++.+|... .+..+|..+|..+. ...++.+.+.+|.+|..
T Consensus 50 ~~~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv 125 (292)
T COG0790 50 GSAYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGV 125 (292)
T ss_pred cccccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCc
Confidence 344567778888888777652 2336667777777653 35777888887443 34566777778887776
Q ss_pred cCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----
Q 006562 462 LGESVEAIQDLSKALEFEPNS-ADILHERGIVNFKFK-------DFNAAVEDLSACVKLDKENKSAYTYLGLALSS---- 529 (640)
Q Consensus 462 ~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~-------~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~---- 529 (640)
..+..+|..+|.++....... ..+...++.+|..-. +...|...|.++-... ++.+.+.+|.+|..
T Consensus 126 ~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv 203 (292)
T COG0790 126 PLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGV 203 (292)
T ss_pred ccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCC
Confidence 347788888888877765433 233666666665531 2225666666665553 45556666655544
Q ss_pred cCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhc
Q 006562 530 IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565 (640)
Q Consensus 530 ~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g 565 (640)
..++.+|..+|.++..... ....+.++ ++...|
T Consensus 204 ~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 204 PRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred CcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 2356666666666665544 55555555 444444
No 262
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.21 E-value=0.26 Score=48.60 Aligned_cols=94 Identities=9% Similarity=-0.056 Sum_probs=65.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc------HHHH------
Q 006562 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA------GEAW------ 452 (640)
Q Consensus 385 ~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~------ 452 (640)
..+-...+-.++.+.-...+...-+..|..+......|...++.+++.+|++.+..-...-... ....
T Consensus 49 ~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df 128 (549)
T PF07079_consen 49 GGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDF 128 (549)
T ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHH
Confidence 3334444445666666666666666778888888889999999999999999887765542221 1111
Q ss_pred ---HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006562 453 ---KRRGQARAALGESVEAIQDLSKALEF 478 (640)
Q Consensus 453 ---~~la~~~~~~~~~~~A~~~~~~al~~ 478 (640)
...+.++...|.+.++...+++.+..
T Consensus 129 ~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ 157 (549)
T PF07079_consen 129 FLDEIEAHSLIETGRFSEGRAILNRIIER 157 (549)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 22577888899999999999888764
No 263
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.21 E-value=0.24 Score=48.19 Aligned_cols=186 Identities=22% Similarity=0.152 Sum_probs=140.2
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----c
Q 006562 425 RAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL----GESVEAIQDLSKALEFEPNSADILHERGIVNFK----F 496 (640)
Q Consensus 425 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~ 496 (640)
....+++..+...+.++-.. .++.....++.+|..- .+..+|..+|..+. ...++.+.+.+|.+|.. .
T Consensus 51 ~~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 51 SAYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCcc
Confidence 34567788888888887662 2346777788887654 46888999999544 44567888999999987 4
Q ss_pred CCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHccCcccHHHHHHHHHHHHH----h
Q 006562 497 KDFNAAVEDLSACVKLDKEN-KSAYTYLGLALSSIG-------EYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD----L 564 (640)
Q Consensus 497 ~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~g-------~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~ 564 (640)
.+..+|..+|+++....... ....+.++.+|..-. +...|...|.++-... ++.+...+|.+|.. .
T Consensus 127 ~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~ 204 (292)
T COG0790 127 LDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVP 204 (292)
T ss_pred cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCC
Confidence 59999999999999885443 344777888777642 2337888888887765 67888999988865 3
Q ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcC---------------CHHHHHHHHHHhhccCCCCH
Q 006562 565 ANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG---------------QHKKAIKDLSSGLGIDPSNI 619 (640)
Q Consensus 565 g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g---------------~~~~A~~~~~~al~~~p~~~ 619 (640)
.++.+|..+|.++-+... ....+.++ ++...| +...|..++..+....+...
T Consensus 205 ~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 271 (292)
T COG0790 205 RDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNA 271 (292)
T ss_pred cCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhH
Confidence 488999999999988766 78888888 666666 78888888888877665544
No 264
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.12 E-value=0.00075 Score=40.95 Aligned_cols=33 Identities=27% Similarity=0.322 Sum_probs=29.7
Q ss_pred hHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCc
Q 006562 70 QDICNRAFCYSQLELHKHVIRDCDKALQLDPTL 102 (640)
Q Consensus 70 ~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~ 102 (640)
..|+.+|.+|..+|++++|+..++++++++|++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 357899999999999999999999999999954
No 265
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=97.12 E-value=0.027 Score=55.95 Aligned_cols=143 Identities=17% Similarity=0.036 Sum_probs=95.8
Q ss_pred HhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------------C------------CCc---HHHHHHHHHHH
Q 006562 409 KEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS--------------N------------PSA---GEAWKRRGQAR 459 (640)
Q Consensus 409 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------------~------------p~~---~~~~~~la~~~ 459 (640)
+.+|-+.+++..++.++..+|+...|.+.+++++-. + +.| ..+.+......
T Consensus 34 ~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L 113 (360)
T PF04910_consen 34 QKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSL 113 (360)
T ss_pred HHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHH
Confidence 445555555555555555555555555555555410 1 112 13455667778
Q ss_pred HHcCCHHHHHHHHHHHHHhCCC-CHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHhCC-----CcHHHHHHHHHHHHHcCC
Q 006562 460 AALGESVEAIQDLSKALEFEPN-SADI-LHERGIVNFKFKDFNAAVEDLSACVKLDK-----ENKSAYTYLGLALSSIGE 532 (640)
Q Consensus 460 ~~~~~~~~A~~~~~~al~~~p~-~~~~-~~~la~~~~~~~~~~~A~~~~~~al~~~~-----~~~~~~~~la~~~~~~g~ 532 (640)
.+.|-+..|.++.+-.+.++|. |+.. ...+-....+.++++--+..++....... .-|...+..+.+++..++
T Consensus 114 ~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~ 193 (360)
T PF04910_consen 114 GRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEK 193 (360)
T ss_pred HhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcC
Confidence 8899999999999999999998 6554 44444555677788777777776555211 134567778888888888
Q ss_pred H---------------HHHHHHHHHHHccCcccH
Q 006562 533 Y---------------KKAEEAHLKAIQLDRNFL 551 (640)
Q Consensus 533 ~---------------~~A~~~~~~a~~~~~~~~ 551 (640)
. +.|...+.+|+...|...
T Consensus 194 ~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl 227 (360)
T PF04910_consen 194 EESSQSSAQSGRSENSESADEALQKAILRFPWVL 227 (360)
T ss_pred ccccccccccccccchhHHHHHHHHHHHHhHHHH
Confidence 8 899999999999877643
No 266
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.12 E-value=0.38 Score=48.61 Aligned_cols=138 Identities=13% Similarity=-0.003 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHH-HHHhcCHHHHHHHHHH
Q 006562 499 FNAAVEDLSACVKLDKEN-KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQF-YQDLANSEKALECLQQ 576 (640)
Q Consensus 499 ~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~ 576 (640)
++.....+.+++.....+ .-++..+-..-.+..-...|...|.++-+.......++..-|.+ |.-.++..-|..+|+-
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeL 426 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFEL 426 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHH
Confidence 444555555555543322 23344444444555556677777777765433333444433333 4457899999999999
Q ss_pred HHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhcc--CCCC-HHHHHHHHHHHHHcCCcc
Q 006562 577 VLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI--DPSN-IECLYLRASCYHAIGEYR 636 (640)
Q Consensus 577 al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~-~~~~~~la~~~~~~g~~~ 636 (640)
.+...++.+..-......+...|+-..|...|++++.. .|+. .++|..+-..-..-|+..
T Consensus 427 GLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~ 489 (656)
T KOG1914|consen 427 GLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLN 489 (656)
T ss_pred HHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHH
Confidence 99999999998888899999999999999999999876 4432 366666655555555544
No 267
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.11 E-value=0.016 Score=49.67 Aligned_cols=112 Identities=22% Similarity=0.133 Sum_probs=74.6
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Q 006562 422 GTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVE-AIQDLSKALEFEPNSADILHERGIVNFKFKDFN 500 (640)
Q Consensus 422 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~-A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 500 (640)
|......|+...++..+.+++.+.....-.-..- ..|-. ....+... ...+...++..+...|+++
T Consensus 13 a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~-------~~W~~~~r~~l~~~------~~~~~~~l~~~~~~~~~~~ 79 (146)
T PF03704_consen 13 ARAAARAGDPEEAIELLEEALALYRGDFLPDLDD-------EEWVEPERERLREL------YLDALERLAEALLEAGDYE 79 (146)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT-------STTHHHHHHHHHHH------HHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc-------cHHHHHHHHHHHHH------HHHHHHHHHHHHHhccCHH
Confidence 4445556777778888888776653321000000 11111 11122221 2346677888999999999
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 006562 501 AAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL 546 (640)
Q Consensus 501 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 546 (640)
+|+..+++++..+|.+..++..+..++...|+..+|+..|+++...
T Consensus 80 ~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 80 EALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988654
No 268
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.10 E-value=0.042 Score=47.73 Aligned_cols=116 Identities=19% Similarity=0.126 Sum_probs=80.7
Q ss_pred HHHHHHHHHhCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHccCccc---HHHHHHHHHHHHHhcCHHHHHHHHHH
Q 006562 503 VEDLSACVKLDKENK---SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF---LEAWGHLTQFYQDLANSEKALECLQQ 576 (640)
Q Consensus 503 ~~~~~~al~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~ 576 (640)
.....+....+|.+. .....++..+...|++++|+..++.++....+. .-+-.+++++...+|.+++|+..+..
T Consensus 72 ~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t 151 (207)
T COG2976 72 IAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDT 151 (207)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhc
Confidence 333444444444443 234557888888899999999998888653332 44567889999999999999888876
Q ss_pred HHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCH
Q 006562 577 VLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI 619 (640)
Q Consensus 577 al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 619 (640)
..... -.+......|.++...|+.++|+..|+++++..++..
T Consensus 152 ~~~~~-w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 152 IKEES-WAAIVAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred ccccc-HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 53211 1133456789999999999999999999998875543
No 269
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.09 E-value=0.00054 Score=64.16 Aligned_cols=95 Identities=27% Similarity=0.384 Sum_probs=86.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q 006562 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGES 465 (640)
Q Consensus 386 ~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 465 (640)
..+...+..|.+++|++.|..++.++|.....+...+.++..++....|+..+..+++++|+....|...+.....+|+|
T Consensus 119 ~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~ 198 (377)
T KOG1308|consen 119 VQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNW 198 (377)
T ss_pred HHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhch
Confidence 34566778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCC
Q 006562 466 VEAIQDLSKALEFEP 480 (640)
Q Consensus 466 ~~A~~~~~~al~~~p 480 (640)
.+|...+..+.+++-
T Consensus 199 e~aa~dl~~a~kld~ 213 (377)
T KOG1308|consen 199 EEAAHDLALACKLDY 213 (377)
T ss_pred HHHHHHHHHHHhccc
Confidence 999999999988764
No 270
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.09 E-value=0.0023 Score=42.91 Aligned_cols=42 Identities=26% Similarity=0.222 Sum_probs=34.2
Q ss_pred HHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHH
Q 006562 71 DICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA 112 (640)
Q Consensus 71 ~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~ 112 (640)
++|-+|.+++++|+|.+|...++.+|+.+|++..+..+...+
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 457789999999999999999999999999998887766544
No 271
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.08 E-value=0.00085 Score=41.25 Aligned_cols=29 Identities=24% Similarity=0.285 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 006562 105 AYILKGCAFSALGRKEEALSVWEKGYEHA 133 (640)
Q Consensus 105 a~~~~g~~y~~~g~~~~A~~~~~~al~~~ 133 (640)
++..+|.+|..+|+|++|+.+|++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 46788888888888888888888875443
No 272
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.05 E-value=0.07 Score=52.43 Aligned_cols=114 Identities=15% Similarity=0.084 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH---cCCHHHHHHHHHHHH
Q 006562 468 AIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS---IGEYKKAEEAHLKAI 544 (640)
Q Consensus 468 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~a~ 544 (640)
-+.++++|++.+|.+...+..+-.+..+..+.++..+.+++++..+|+++..|..+-..... .-.+......|.+++
T Consensus 50 klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l 129 (321)
T PF08424_consen 50 KLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCL 129 (321)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 34445555555555555544444444444455555555555555555554444433222221 122334444444443
Q ss_pred ccC------------------cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Q 006562 545 QLD------------------RNFLEAWGHLTQFYQDLANSEKALECLQQVLYID 581 (640)
Q Consensus 545 ~~~------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 581 (640)
..- .....++..+.....+.|-.+.|+..++-.++.+
T Consensus 130 ~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 130 RALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 321 0013344566666777788888888888877764
No 273
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.93 E-value=0.81 Score=49.36 Aligned_cols=255 Identities=16% Similarity=0.078 Sum_probs=154.5
Q ss_pred ccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-----cHHHH
Q 006562 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY-PEALIGRGTARAFQRELEAAISDFTEAIQSNPS-----AGEAW 452 (640)
Q Consensus 379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~ 452 (640)
.-.+.+..-+..+...|...+|+...-.+ .+|.. .......+.-....++.. .+...++.-|. ++...
T Consensus 345 ~~~~lH~~Aa~w~~~~g~~~eAI~hAlaA--~d~~~aa~lle~~~~~L~~~~~ls----ll~~~~~~lP~~~l~~~P~Lv 418 (894)
T COG2909 345 RLKELHRAAAEWFAEHGLPSEAIDHALAA--GDPEMAADLLEQLEWQLFNGSELS----LLLAWLKALPAELLASTPRLV 418 (894)
T ss_pred chhHHHHHHHHHHHhCCChHHHHHHHHhC--CCHHHHHHHHHhhhhhhhcccchH----HHHHHHHhCCHHHHhhCchHH
Confidence 33677777788888888888888765433 12221 112222233333333332 23333333342 34556
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc-----HH
Q 006562 453 KRRGQARAALGESVEAIQDLSKALEFEPNS---------ADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN-----KS 518 (640)
Q Consensus 453 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~---------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-----~~ 518 (640)
...+.......++.+|.....++...-|.. .......|.+....|+++.|+...+.++..-|.+ ..
T Consensus 419 ll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~ 498 (894)
T COG2909 419 LLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIV 498 (894)
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhh
Confidence 667888888899999998888877654431 2345566788888999999999999999887765 35
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccCcc----c--HHHHHHHHHHHHHhcCHHH--HHHHHHHH----HHhCCCChH
Q 006562 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRN----F--LEAWGHLTQFYQDLANSEK--ALECLQQV----LYIDKRFSK 586 (640)
Q Consensus 519 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~----~--~~~~~~la~~~~~~g~~~~--A~~~~~~a----l~~~~~~~~ 586 (640)
++..+|.+..-.|++++|..+...+.+.... . ..+....+.++..+|+... ....+... +...|.+..
T Consensus 499 ~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f 578 (894)
T COG2909 499 ALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEF 578 (894)
T ss_pred hhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchh
Confidence 6677888889999999999998888776322 2 2233455777788883322 22223222 222333333
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhcc----CCCCHH---HHHHHHHHHHHcCCccccc
Q 006562 587 AYHLRGLLLHGLGQHKKAIKDLSSGLGI----DPSNIE---CLYLRASCYHAIGEYREAV 639 (640)
Q Consensus 587 ~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~---~~~~la~~~~~~g~~~~Al 639 (640)
.....+.++...-+++.+.......++. .|.... ....|+.++...|+.++|.
T Consensus 579 ~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~ 638 (894)
T COG2909 579 LVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKAL 638 (894)
T ss_pred HHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHH
Confidence 3333333333323355555555555443 343332 2247899999999998874
No 274
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.91 E-value=0.11 Score=51.17 Aligned_cols=144 Identities=13% Similarity=0.077 Sum_probs=86.3
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcc------------CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 006562 404 FDQILKEDPMYPEALIGRGTARAFQR------------ELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQD 471 (640)
Q Consensus 404 ~~~~l~~~~~~~~~~~~la~~~~~~g------------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~ 471 (640)
|++.++.+|.+..+|..+....-..- -.+.-+.++++|++.+|++...+..+-.......+.++...-
T Consensus 8 l~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~ 87 (321)
T PF08424_consen 8 LNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKK 87 (321)
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 44444555555555554444332221 134456667777777777777666666666666666777777
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHhCCC------------------cHHHHHHHHHHHHHc
Q 006562 472 LSKALEFEPNSADILHERGIVNFK---FKDFNAAVEDLSACVKLDKE------------------NKSAYTYLGLALSSI 530 (640)
Q Consensus 472 ~~~al~~~p~~~~~~~~la~~~~~---~~~~~~A~~~~~~al~~~~~------------------~~~~~~~la~~~~~~ 530 (640)
+++++..+|++...|..+-..... .-.++.....|.+++..-.. ...++..++......
T Consensus 88 we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~a 167 (321)
T PF08424_consen 88 WEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQA 167 (321)
T ss_pred HHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHC
Confidence 777777777776666554443333 22455666666665543110 123455567777788
Q ss_pred CCHHHHHHHHHHHHccC
Q 006562 531 GEYKKAEEAHLKAIQLD 547 (640)
Q Consensus 531 g~~~~A~~~~~~a~~~~ 547 (640)
|..+.|+..++-.++.+
T Consensus 168 G~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 168 GYTERAVALWQALLEFN 184 (321)
T ss_pred CchHHHHHHHHHHHHHH
Confidence 88889998888888765
No 275
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.72 E-value=0.22 Score=53.13 Aligned_cols=175 Identities=21% Similarity=0.078 Sum_probs=130.6
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----cCHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHcC--
Q 006562 396 KYASAISIFDQILKEDPMYPEALIGRGTARAFQ-----RELEAAISDFTEAIQS-----NPSAGEAWKRRGQARAALG-- 463 (640)
Q Consensus 396 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~~-- 463 (640)
+...|..+++.+... .+..+...+|.+|..- .|.+.|+.+++.+... .-.++.+.+.+|.+|....
T Consensus 227 ~~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence 356788888877654 4677888888888765 5899999999999771 1124557788999998843
Q ss_pred ---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCH
Q 006562 464 ---ESVEAIQDLSKALEFEPNSADILHERGIVNFKFK---DFNAAVEDLSACVKLDKENKSAYTYLGLALSS----IGEY 533 (640)
Q Consensus 464 ---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~ 533 (640)
++..|+.++.++.... ++.+.+.+|.++.... +...|.++|..+... .+..+.+.++.+|.. ..+.
T Consensus 305 ~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~ 380 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNL 380 (552)
T ss_pred ccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCH
Confidence 6788999999998875 4667888898887765 678999999998876 467888888888876 3578
Q ss_pred HHHHHHHHHHHccCcccHHHHHHHHHHHHHh-cCHHHHHHHHHHHH
Q 006562 534 KKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL-ANSEKALECLQQVL 578 (640)
Q Consensus 534 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al 578 (640)
..|..++.++.+.. .+.+...++.++... +.++.+...+...-
T Consensus 381 ~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a 424 (552)
T KOG1550|consen 381 ELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLA 424 (552)
T ss_pred HHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHH
Confidence 99999999999887 455555555554433 66666665555443
No 276
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=96.68 E-value=1.1 Score=47.11 Aligned_cols=50 Identities=10% Similarity=-0.078 Sum_probs=40.7
Q ss_pred HHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006562 79 YSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKG 129 (640)
Q Consensus 79 ~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~~~~A~~~~~~a 129 (640)
-+..|+|+.|...++ .+...|+-...|.+++..-+.-|+.--|.++|-..
T Consensus 454 aid~~df~ra~afle-s~~~~~da~amw~~laelale~~nl~iaercfaai 503 (1636)
T KOG3616|consen 454 AIDDGDFDRATAFLE-SLEMGPDAEAMWIRLAELALEAGNLFIAERCFAAI 503 (1636)
T ss_pred ccccCchHHHHHHHH-hhccCccHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 356688888877554 57888988889999999999999988888888765
No 277
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.67 E-value=0.48 Score=46.72 Aligned_cols=129 Identities=10% Similarity=-0.021 Sum_probs=81.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH-HHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHH
Q 006562 490 GIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA-LSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSE 568 (640)
Q Consensus 490 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~ 568 (640)
...-.+..-.+.|...|.++-+..-....++..-|.+ +...|++.-|-..|+-.+...|+.+......-..+...++-.
T Consensus 404 ~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~ 483 (660)
T COG5107 404 LNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEE 483 (660)
T ss_pred HHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHH
Confidence 3333444556667777776655432333333333333 345778888888888888888887766666666677778888
Q ss_pred HHHHHHHHHHHhCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCC
Q 006562 569 KALECLQQVLYIDKRF--SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN 618 (640)
Q Consensus 569 ~A~~~~~~al~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 618 (640)
.|...|++++..-... ...|-.+-..-..-|+...+...-++...+.|..
T Consensus 484 naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 484 NARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 8888888776543322 3455555555666777777777777766666653
No 278
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.63 E-value=0.13 Score=51.21 Aligned_cols=142 Identities=15% Similarity=0.035 Sum_probs=107.5
Q ss_pred HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------CC------------CCH---HHHHHHHH
Q 006562 441 AIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEF--------------EP------------NSA---DILHERGI 491 (640)
Q Consensus 441 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------------~p------------~~~---~~~~~la~ 491 (640)
.+..+|-+.+++..++.++..+|+...|.+.+++++-. ++ .|. .+.+....
T Consensus 32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~ 111 (360)
T PF04910_consen 32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQ 111 (360)
T ss_pred HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHH
Confidence 35678999999999999999999999999999988632 11 111 24556677
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCC-cHH-HHHHHHHHHHHcCCHHHHHHHHHHHHccCc-----ccHHHHHHHHHHHHHh
Q 006562 492 VNFKFKDFNAAVEDLSACVKLDKE-NKS-AYTYLGLALSSIGEYKKAEEAHLKAIQLDR-----NFLEAWGHLTQFYQDL 564 (640)
Q Consensus 492 ~~~~~~~~~~A~~~~~~al~~~~~-~~~-~~~~la~~~~~~g~~~~A~~~~~~a~~~~~-----~~~~~~~~la~~~~~~ 564 (640)
.+.+.|-+..|.++.+-.+.++|. |+- +.+.+-....+.++++--+..++....... ..|..-+..+.++...
T Consensus 112 ~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l 191 (360)
T PF04910_consen 112 SLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRL 191 (360)
T ss_pred HHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHh
Confidence 788899999999999999999998 764 444455555667888877777776554211 1345667778888888
Q ss_pred cCH---------------HHHHHHHHHHHHhCC
Q 006562 565 ANS---------------EKALECLQQVLYIDK 582 (640)
Q Consensus 565 g~~---------------~~A~~~~~~al~~~~ 582 (640)
++. +.|...+.+|+...|
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 192 EKEESSQSSAQSGRSENSESADEALQKAILRFP 224 (360)
T ss_pred cCccccccccccccccchhHHHHHHHHHHHHhH
Confidence 887 899999999987765
No 279
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.59 E-value=0.0043 Score=37.14 Aligned_cols=30 Identities=20% Similarity=0.297 Sum_probs=19.6
Q ss_pred HHhHHHHHHhhhcHHHHHHHHHHHHHcCCC
Q 006562 72 ICNRAFCYSQLELHKHVIRDCDKALQLDPT 101 (640)
Q Consensus 72 ~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~ 101 (640)
++++|.|+.++|++++|+..++++++..|+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 456666666666666666666666666665
No 280
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=96.58 E-value=0.013 Score=58.89 Aligned_cols=98 Identities=17% Similarity=0.117 Sum_probs=87.2
Q ss_pred hcCCHHHHHHHHHHHHcccC--chhHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 006562 48 SLRNWSKAIRILDSLLAQSY--EIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSV 125 (640)
Q Consensus 48 ~~~~y~~Ai~~y~~ai~~~~--~~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~~~~A~~~ 125 (640)
..||-..|+.|+..|+...| ......++|+..++-|-.-.|-..+.++|.+....+-.++-+|.+|+.+.+.+.|+..
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHH
Confidence 45999999999999999884 4455899999999999999999999999999977788999999999999999999999
Q ss_pred HHHHHhhccCChHHHHHHHh
Q 006562 126 WEKGYEHALHQSADLKQFLE 145 (640)
Q Consensus 126 ~~~al~~~~~~~~~~~~~~~ 145 (640)
|++|++++|..+.....+..
T Consensus 699 ~~~a~~~~~~~~~~~~~l~~ 718 (886)
T KOG4507|consen 699 FRQALKLTTKCPECENSLKL 718 (886)
T ss_pred HHHHHhcCCCChhhHHHHHH
Confidence 99999999999876655543
No 281
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.57 E-value=0.0056 Score=56.46 Aligned_cols=69 Identities=20% Similarity=0.025 Sum_probs=62.8
Q ss_pred HhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHHHH
Q 006562 73 CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLK 141 (640)
Q Consensus 73 ~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~ 141 (640)
.+.|.-..+.|+.++|...++.|+.++|++++++..+|.....-++..+|-.+|-+|+.++|..++++.
T Consensus 120 l~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALv 188 (472)
T KOG3824|consen 120 LKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALV 188 (472)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHh
Confidence 455556778899999999999999999999999999999999999999999999999999999987753
No 282
>PRK10941 hypothetical protein; Provisional
Probab=96.56 E-value=0.02 Score=53.90 Aligned_cols=69 Identities=16% Similarity=0.069 Sum_probs=64.2
Q ss_pred HhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHHHH
Q 006562 73 CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLK 141 (640)
Q Consensus 73 ~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~ 141 (640)
.|+-.+|.+.++++.|+..++..+.++|+++.-+--+|.+|.++|.+..|...++.-++..|+.|....
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 577789999999999999999999999999988888999999999999999999999999999987643
No 283
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.56 E-value=0.33 Score=47.80 Aligned_cols=214 Identities=8% Similarity=-0.044 Sum_probs=148.2
Q ss_pred HHHhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---
Q 006562 368 FCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS--- 444 (640)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--- 444 (640)
+....+...-+..++.|+.-.......++-+.|+....+++...|. ..+.++.+|....+-+....+|+++.+.
T Consensus 289 y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~r 365 (660)
T COG5107 289 YIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLKR 365 (660)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHHH
Confidence 4455566667777889998888889999999999988888766655 6677888887777777666666665421
Q ss_pred ---------------CCC-cHH-----------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHhc
Q 006562 445 ---------------NPS-AGE-----------AWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGI-VNFKF 496 (640)
Q Consensus 445 ---------------~p~-~~~-----------~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~-~~~~~ 496 (640)
+|. .++ +|..+-..-.+..-.+.|...|-++-+..-...+++..-|. -+...
T Consensus 366 ~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~ 445 (660)
T COG5107 366 KYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT 445 (660)
T ss_pred HHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc
Confidence 110 011 22222333334455677777777776654233334433333 24568
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccc--HHHHHHHHHHHHHhcCHHHHHHHH
Q 006562 497 KDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF--LEAWGHLTQFYQDLANSEKALECL 574 (640)
Q Consensus 497 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~ 574 (640)
|++..|...|+-.+...|+++......-..+...++-..|...|+.++..-... ...|-.+...-..-|+...+...=
T Consensus 446 ~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe 525 (660)
T COG5107 446 GDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLE 525 (660)
T ss_pred CCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHH
Confidence 999999999999999999999888888888899999999999999888654333 455555555566668877777777
Q ss_pred HHHHHhCCCC
Q 006562 575 QQVLYIDKRF 584 (640)
Q Consensus 575 ~~al~~~~~~ 584 (640)
++.....|..
T Consensus 526 ~rf~e~~pQe 535 (660)
T COG5107 526 ERFRELVPQE 535 (660)
T ss_pred HHHHHHcCcH
Confidence 7766666643
No 284
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.50 E-value=0.058 Score=45.64 Aligned_cols=86 Identities=17% Similarity=0.119 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 006562 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (640)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 460 (640)
+..++.........++.+++..++..+.-+.|..+..-..-|.++...|+|.+|+..++.+....|..+.+-..++.|+.
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY 89 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 44556666677777888888888888888888888888888888888888888888888888777878877778888887
Q ss_pred HcCCHH
Q 006562 461 ALGESV 466 (640)
Q Consensus 461 ~~~~~~ 466 (640)
..|+..
T Consensus 90 ~~~D~~ 95 (160)
T PF09613_consen 90 ALGDPS 95 (160)
T ss_pred HcCChH
Confidence 777654
No 285
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.48 E-value=3.1 Score=50.10 Aligned_cols=90 Identities=14% Similarity=0.093 Sum_probs=65.8
Q ss_pred HhcCCHHHHHHHHHHH----HcccCchhHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHH
Q 006562 47 CSLRNWSKAIRILDSL----LAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEA 122 (640)
Q Consensus 47 ~~~~~y~~Ai~~y~~a----i~~~~~~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~~~~A 122 (640)
|+.|.|.+|+-++++- +..+.....+...-.+|..+++++...-.... ...+|+. ...-..+...|++..|
T Consensus 1394 frc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~-r~a~~sl----~~qil~~e~~g~~~da 1468 (2382)
T KOG0890|consen 1394 FRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSAR-RFADPSL----YQQILEHEASGNWADA 1468 (2382)
T ss_pred HhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHH-hhcCccH----HHHHHHHHhhccHHHH
Confidence 8899999999999993 22222233366666799999999887766554 5556653 3344557889999999
Q ss_pred HHHHHHHHhhccCChHHHH
Q 006562 123 LSVWEKGYEHALHQSADLK 141 (640)
Q Consensus 123 ~~~~~~al~~~~~~~~~~~ 141 (640)
..+|++++..+|....++.
T Consensus 1469 ~~Cye~~~q~~p~~~~~~~ 1487 (2382)
T KOG0890|consen 1469 AACYERLIQKDPDKEKHHS 1487 (2382)
T ss_pred HHHHHHhhcCCCccccchh
Confidence 9999999988887654443
No 286
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=96.48 E-value=0.0086 Score=57.74 Aligned_cols=86 Identities=14% Similarity=0.212 Sum_probs=74.4
Q ss_pred HHHhcCCHHHHHHHHHHHHcccCchhH-----------H--------HhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHH
Q 006562 45 KLCSLRNWSKAIRILDSLLAQSYEIQD-----------I--------CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQA 105 (640)
Q Consensus 45 ~~~~~~~y~~Ai~~y~~ai~~~~~~~~-----------~--------~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a 105 (640)
..|++|+|..|+.-|..|+++.....+ . -.+..||+++++.+-|+...-++|-++|.++.-
T Consensus 185 ~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~frn 264 (569)
T PF15015_consen 185 SCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRN 264 (569)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhH
Confidence 668999999999999988876521111 1 267889999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 006562 106 YILKGCAFSALGRKEEALSVWEKGY 130 (640)
Q Consensus 106 ~~~~g~~y~~~g~~~~A~~~~~~al 130 (640)
|++.|.++..+.+|.+|.+.+.-|.
T Consensus 265 HLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 265 HLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888884
No 287
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.41 E-value=0.007 Score=36.19 Aligned_cols=29 Identities=21% Similarity=0.208 Sum_probs=12.0
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 006562 418 LIGRGTARAFQRELEAAISDFTEAIQSNP 446 (640)
Q Consensus 418 ~~~la~~~~~~g~~~~A~~~~~~al~~~p 446 (640)
++.+|.++...|++++|+..|+++++..|
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 33344444444444444444444444433
No 288
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.39 E-value=0.21 Score=50.56 Aligned_cols=66 Identities=20% Similarity=0.127 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---C----CChHHHHHHHHHHHhcCC-HHHHHHHHHHhhccCCC
Q 006562 552 EAWGHLTQFYQDLANSEKALECLQQVLYID---K----RFSKAYHLRGLLLHGLGQ-HKKAIKDLSSGLGIDPS 617 (640)
Q Consensus 552 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~---~----~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~ 617 (640)
--+..+|.++..+|+...|..+|..+++.. . -.|.+++.+|.++..+|. ..++..++.+|-....+
T Consensus 450 lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~d 523 (546)
T KOG3783|consen 450 LKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASD 523 (546)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccc
Confidence 345678999999999999999999887432 1 236789999999999998 99999999999887644
No 289
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.30 E-value=0.0066 Score=37.25 Aligned_cols=27 Identities=26% Similarity=0.223 Sum_probs=21.3
Q ss_pred HHhHHHHHHhhhcHHHHHHHHHHHHHc
Q 006562 72 ICNRAFCYSQLELHKHVIRDCDKALQL 98 (640)
Q Consensus 72 ~~~~A~~~~~~g~~~~Ai~~~~~al~~ 98 (640)
+.++|.+|.++|+|++|+..++++|.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 678888999999999999999985544
No 290
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=96.29 E-value=0.0071 Score=57.23 Aligned_cols=102 Identities=17% Similarity=0.048 Sum_probs=86.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHccc-----------Cc---------hhHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCC
Q 006562 42 ELAKLCSLRNWSKAIRILDSLLAQS-----------YE---------IQDICNRAFCYSQLELHKHVIRDCDKALQLDPT 101 (640)
Q Consensus 42 ~~~~~~~~~~y~~Ai~~y~~ai~~~-----------~~---------~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~ 101 (640)
.....|++++|+.|..-|.+++.-- ++ ...+.+.+.|-++++.+..|+..+..++..+|.
T Consensus 228 ~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s 307 (372)
T KOG0546|consen 228 IGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDERS 307 (372)
T ss_pred cchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccccChh
Confidence 3447899999999999999986321 11 111568899999999999999999999999999
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHHHHHH
Q 006562 102 LLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQF 143 (640)
Q Consensus 102 ~~~a~~~~g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 143 (640)
..++|+++|..+..+.++++|+..++.+....|++..-...+
T Consensus 308 ~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~ 349 (372)
T KOG0546|consen 308 KTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEEL 349 (372)
T ss_pred hCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHH
Confidence 999999999999999999999999999998888886554443
No 291
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=96.26 E-value=2.3 Score=46.21 Aligned_cols=271 Identities=12% Similarity=0.051 Sum_probs=173.1
Q ss_pred HHHhhhhccCc----ccHHHHHHHHHHHH-HcCChHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHccCHHHHHH
Q 006562 368 FCVTRISKSKS----ISVDFRLSRGIAQV-NEGKYASAISIFDQILKEDPM--Y----PEALIGRGTARAFQRELEAAIS 436 (640)
Q Consensus 368 ~~~~~~~~~~~----~~~~~~~~~a~~~~-~~g~~~~A~~~~~~~l~~~~~--~----~~~~~~la~~~~~~g~~~~A~~ 436 (640)
.|+..+....+ .++..++.+|.+++ ...+++.|..++++++.+... . ..+.+.++.++.+.+... |..
T Consensus 42 ~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~ 120 (608)
T PF10345_consen 42 KCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALK 120 (608)
T ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHH
Confidence 35555553332 34567889999888 678999999999999876643 2 234566788888887777 999
Q ss_pred HHHHHHHhCCC---cHH-HHHHH--HHHHHHcCCHHHHHHHHHHHHHhC--CCCHHH----HHHHHHHHHhcCCHHHHHH
Q 006562 437 DFTEAIQSNPS---AGE-AWKRR--GQARAALGESVEAIQDLSKALEFE--PNSADI----LHERGIVNFKFKDFNAAVE 504 (640)
Q Consensus 437 ~~~~al~~~p~---~~~-~~~~l--a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~----~~~la~~~~~~~~~~~A~~ 504 (640)
.+++.++.... ... ..+.+ .......+++..|++.++...... +.++.+ ....+.+....+..+++++
T Consensus 121 ~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~ 200 (608)
T PF10345_consen 121 NLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLE 200 (608)
T ss_pred HHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHH
Confidence 99999876544 222 11222 233333479999999999988876 344432 3334566677787888888
Q ss_pred HHHHHHHhCCC----------cHHHHHHHH--HHHHHcCCHHHHHHHHHHH---Hcc---Cc---c--------------
Q 006562 505 DLSACVKLDKE----------NKSAYTYLG--LALSSIGEYKKAEEAHLKA---IQL---DR---N-------------- 549 (640)
Q Consensus 505 ~~~~al~~~~~----------~~~~~~~la--~~~~~~g~~~~A~~~~~~a---~~~---~~---~-------------- 549 (640)
.++++...... ...++..+- .++...|+++.+...+++. +.. .+ .
T Consensus 201 ~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~ 280 (608)
T PF10345_consen 201 LLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEG 280 (608)
T ss_pred HHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccc
Confidence 88887543211 123343333 3445567766666554432 211 11 0
Q ss_pred --------c-----------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC----------C----------------
Q 006562 550 --------F-----------LEAWGHLTQFYQDLANSEKALECLQQVLYIDKR----------F---------------- 584 (640)
Q Consensus 550 --------~-----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----------~---------------- 584 (640)
. .-+|..-|......|..++|.+++.++++.-.+ .
T Consensus 281 ~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~ 360 (608)
T PF10345_consen 281 SSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQ 360 (608)
T ss_pred cccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHH
Confidence 0 112333455566667777888888887653111 0
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHhhccC---CC------CHHHHHHHHHHHHHcCCccccc
Q 006562 585 SKAYHLRGLLLHGLGQHKKAIKDLSSGLGID---PS------NIECLYLRASCYHAIGEYREAV 639 (640)
Q Consensus 585 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~------~~~~~~~la~~~~~~g~~~~Al 639 (640)
....+..+.+..-.+++..|...++.+.... |. .+..++..|..+...|+.+.|+
T Consensus 361 ~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~ 424 (608)
T PF10345_consen 361 CYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAAL 424 (608)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHH
Confidence 0134556777888999999999988776542 22 3577888999999999999885
No 292
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.22 E-value=0.0091 Score=35.21 Aligned_cols=31 Identities=29% Similarity=0.403 Sum_probs=19.5
Q ss_pred HHHhHHHHHHhhhcHHHHHHHHHHHHHcCCC
Q 006562 71 DICNRAFCYSQLELHKHVIRDCDKALQLDPT 101 (640)
Q Consensus 71 ~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~ 101 (640)
.+.++|.++..+|++++|+..++++++.+|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 3556666666666666666666666666654
No 293
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.17 E-value=0.42 Score=43.71 Aligned_cols=188 Identities=10% Similarity=-0.015 Sum_probs=106.3
Q ss_pred cCChHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CCcH-HHHHHHHHHHHHcC
Q 006562 394 EGKYASAISIFDQILKEDPMYP----EALIGRGTARAFQRELEAAISDFTEAIQSN-----PSAG-EAWKRRGQARAALG 463 (640)
Q Consensus 394 ~g~~~~A~~~~~~~l~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~-~~~~~la~~~~~~~ 463 (640)
..+.++|+.-|++++++.+... .++-.+..+++.+|+|++-.+.|.+.+..- .+.. .....+-..-....
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 4589999999999999987753 466778889999999999999999887431 1111 11111111111222
Q ss_pred CHHHHHHHHHHHHHh--CCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc------------HHHHHHHHH
Q 006562 464 ESVEAIQDLSKALEF--EPNSAD----ILHERGIVNFKFKDFNAAVEDLSACVKLDKEN------------KSAYTYLGL 525 (640)
Q Consensus 464 ~~~~A~~~~~~al~~--~p~~~~----~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~------------~~~~~~la~ 525 (640)
+.+--...|+..+.. +..+.. ....+|.+|+..++|.+-.+.+++.-...... .++|..-..
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 333333333332221 111222 23357777777777777766666655432211 133444455
Q ss_pred HHHHcCCHHHHHHHHHHHHccCccc--HHH----HHHHHHHHHHhcCHHHHHHHHHHHHHhC
Q 006562 526 ALSSIGEYKKAEEAHLKAIQLDRNF--LEA----WGHLTQFYQDLANSEKALECLQQVLYID 581 (640)
Q Consensus 526 ~~~~~g~~~~A~~~~~~a~~~~~~~--~~~----~~~la~~~~~~g~~~~A~~~~~~al~~~ 581 (640)
.|..+.+-.+-...|++++.+...- |.. .-.=|..+.+.|++++|-.-|-.+++..
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNY 261 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNY 261 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcc
Confidence 6666666666666777776653221 221 1223445666677777776666666543
No 294
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.17 E-value=0.53 Score=51.24 Aligned_cols=219 Identities=16% Similarity=0.113 Sum_probs=131.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Q 006562 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESV 466 (640)
Q Consensus 387 ~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 466 (640)
.|.+....+-|++|..+|.+-- -+..+.. ......+..+.|.++.+++ +.+.+|..+|.+..+.|...
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~----~n~~A~~---VLie~i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~ 1121 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFD----MNVSAIQ---VLIENIGSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVK 1121 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhc----ccHHHHH---HHHHHhhhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchH
Confidence 3566677778888888887531 1122211 1122334555555555543 34556666666666666666
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC----------------------------CCcHH
Q 006562 467 EAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD----------------------------KENKS 518 (640)
Q Consensus 467 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~----------------------------~~~~~ 518 (640)
+|++.|-++ +++..+.....+..+.|.|++-++++.-+-+.. |+..
T Consensus 1122 dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi~gpN~A- 1195 (1666)
T KOG0985|consen 1122 DAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTELEEFIAGPNVA- 1195 (1666)
T ss_pred HHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHHHhcCCCch-
Confidence 666665443 344555555555556666666666555544332 2221
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC----------------
Q 006562 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK---------------- 582 (640)
Q Consensus 519 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~---------------- 582 (640)
-....|.-++..|.|+.|.-+|.. ..-|..++..+..+|+|..|....+++-....
T Consensus 1196 ~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrl 1267 (1666)
T KOG0985|consen 1196 NIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRL 1267 (1666)
T ss_pred hHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhH
Confidence 223355556666666666655543 44567788889999999999988877632210
Q ss_pred ---------CChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH
Q 006562 583 ---------RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHA 631 (640)
Q Consensus 583 ---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 631 (640)
-+++-+-.+...|...|-+++-+..++.++-+..-+...+..||.+|.+
T Consensus 1268 AQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1268 AQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSK 1325 (1666)
T ss_pred HHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHh
Confidence 1223355677788899999999999999988766655555556665543
No 295
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.14 E-value=0.094 Score=41.12 Aligned_cols=103 Identities=16% Similarity=0.105 Sum_probs=58.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 006562 387 RGIAQVNEGKYASAISIFDQILKEDPMYP---EALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG 463 (640)
Q Consensus 387 ~a~~~~~~g~~~~A~~~~~~~l~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 463 (640)
+|..++..|++-+|+++.+..+...+++. ..+...|.++..+. ......+....+.+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA------------~~ten~d~k~~yLl-------- 61 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLA------------KKTENPDVKFRYLL-------- 61 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHH------------HhccCchHHHHHHH--------
Confidence 35667888888888888888887776655 33444455544332 11111111222222
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 006562 464 ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKL 512 (640)
Q Consensus 464 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 512 (640)
.+++.+.++..+.|..+..++.+|.-+-....|+++..-.++++..
T Consensus 62 ---~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 62 ---GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred ---HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 2455666666666666666666666555555666666666666554
No 296
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.14 E-value=0.13 Score=43.63 Aligned_cols=77 Identities=18% Similarity=0.053 Sum_probs=38.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcC
Q 006562 490 GIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN 566 (640)
Q Consensus 490 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~ 566 (640)
..+-...++.+++...+...--+.|..+..-..-|.++...|+|.+|+..|+.+....|..+.+--.++.|+..+|+
T Consensus 17 ~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 17 LSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred HHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 33334444555555555544445555555555555555555555555555555544445445444455555544444
No 297
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.13 E-value=1.6 Score=52.47 Aligned_cols=83 Identities=12% Similarity=0.051 Sum_probs=61.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHcccCc-hhHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHH-HHHHcCCH
Q 006562 42 ELAKLCSLRNWSKAIRILDSLLAQSYE-IQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGC-AFSALGRK 119 (640)
Q Consensus 42 ~~~~~~~~~~y~~Ai~~y~~ai~~~~~-~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~-~y~~~g~~ 119 (640)
..-.+-..|+|+.|..||++++...|+ ...+...-.+-+..|.+...+...+-...-.++..+-++..|. +-..++++
T Consensus 1455 qil~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qw 1534 (2382)
T KOG0890|consen 1455 QILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQW 1534 (2382)
T ss_pred HHHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcch
Confidence 334446779999999999999999965 5556666678888999999999888877777777776666654 44666666
Q ss_pred HHHHH
Q 006562 120 EEALS 124 (640)
Q Consensus 120 ~~A~~ 124 (640)
+.-..
T Consensus 1535 D~~e~ 1539 (2382)
T KOG0890|consen 1535 DLLES 1539 (2382)
T ss_pred hhhhh
Confidence 65543
No 298
>PRK10941 hypothetical protein; Provisional
Probab=96.11 E-value=0.066 Score=50.49 Aligned_cols=76 Identities=22% Similarity=0.168 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHH
Q 006562 553 AWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASC 628 (640)
Q Consensus 553 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 628 (640)
...++-.+|...++++.|+.+.+..+...|+++.-+...|.+|.++|.+..|...++..++..|+++.+-....++
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 3445666777788888888888888888888888888888888888888888888888888888877665544444
No 299
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=96.04 E-value=3.5 Score=46.31 Aligned_cols=93 Identities=8% Similarity=0.044 Sum_probs=75.8
Q ss_pred HHHhcCCHHHHHHHHHHHHcccCch----hHHHhHHHHHHhh-------hcHHHHHHHHHHHHHcCCCchHHHHHHHHHH
Q 006562 45 KLCSLRNWSKAIRILDSLLAQSYEI----QDICNRAFCYSQL-------ELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113 (640)
Q Consensus 45 ~~~~~~~y~~Ai~~y~~ai~~~~~~----~~~~~~A~~~~~~-------g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y 113 (640)
.|+..+.|++|+..|.+....-|.- .+.+..|.+.+.+ ..+++|+..+++ |--.|.-+--|...|.+|
T Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 562 (932)
T PRK13184 484 AFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSY-LHGGVGAPLEYLGKALVY 562 (932)
T ss_pred HHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHH-hcCCCCCchHHHhHHHHH
Confidence 4678899999999999998876433 4456666666554 368888888887 455787888899999999
Q ss_pred HHcCCHHHHHHHHHHHHhhccCChH
Q 006562 114 SALGRKEEALSVWEKGYEHALHQSA 138 (640)
Q Consensus 114 ~~~g~~~~A~~~~~~al~~~~~~~~ 138 (640)
..+|+++|-+++|..|++--|.+|.
T Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (932)
T PRK13184 563 QRLGEYNEEIKSLLLALKRYSQHPE 587 (932)
T ss_pred HHhhhHHHHHHHHHHHHHhcCCCCc
Confidence 9999999999999999988888874
No 300
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.03 E-value=0.039 Score=37.08 Aligned_cols=37 Identities=22% Similarity=0.231 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHH
Q 006562 383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALI 419 (640)
Q Consensus 383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 419 (640)
.++.+|..++..|+|.+|..+.+.+++.+|++..+..
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 3445555555555555555555555555555554443
No 301
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=95.93 E-value=0.16 Score=50.77 Aligned_cols=95 Identities=9% Similarity=0.027 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHH
Q 006562 432 EAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKD-FNAAVEDLSACV 510 (640)
Q Consensus 432 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~al 510 (640)
..-...|+++....+.+...|........+.+.+.+--..|.+++..+|++++.|..-|.-.+..+. .+.|...+.+++
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL 167 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence 4456678888888888888888887777777778888888888888888888888888877777665 888888888888
Q ss_pred HhCCCcHHHHHHHHHH
Q 006562 511 KLDKENKSAYTYLGLA 526 (640)
Q Consensus 511 ~~~~~~~~~~~~la~~ 526 (640)
+.+|+++..|...-..
T Consensus 168 R~npdsp~Lw~eyfrm 183 (568)
T KOG2396|consen 168 RFNPDSPKLWKEYFRM 183 (568)
T ss_pred hcCCCChHHHHHHHHH
Confidence 8888888777654433
No 302
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.89 E-value=0.014 Score=34.33 Aligned_cols=32 Identities=34% Similarity=0.416 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhccC
Q 006562 104 QAYILKGCAFSALGRKEEALSVWEKGYEHALH 135 (640)
Q Consensus 104 ~a~~~~g~~y~~~g~~~~A~~~~~~al~~~~~ 135 (640)
.+++.+|.+|..+|++++|+..|++++++.|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 57899999999999999999999999876654
No 303
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=95.82 E-value=0.043 Score=50.87 Aligned_cols=72 Identities=19% Similarity=0.077 Sum_probs=52.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 006562 522 YLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGL 593 (640)
Q Consensus 522 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~ 593 (640)
..+.-....|+.++|...|+.++.+.|.+++++..+|.+....++.-+|-.+|-+++.+.|.+.+++.+.+.
T Consensus 121 ~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 121 KAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 344445566777777777777777777777777777777777777777777777777777777777666554
No 304
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.80 E-value=1.3 Score=46.17 Aligned_cols=156 Identities=16% Similarity=0.086 Sum_probs=81.1
Q ss_pred CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 006562 377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---------PEALIGRGTARAFQRELEAAISDFTEAIQSNPS 447 (640)
Q Consensus 377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 447 (640)
+...++.|..+|...+..-.++.|...|-++-.. |.- ..--...|.+-..-|++++|.+.|-.+-..+
T Consensus 688 dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 688 DNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY-AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred cCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh--
Confidence 3445788888898888888888887777654321 110 0001233444445577888877775542211
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH---------------
Q 006562 448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEP--NSADILHERGIVNFKFKDFNAAVEDLSACV--------------- 510 (640)
Q Consensus 448 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al--------------- 510 (640)
..-.++...|+|-...+.++..-.-.. ....++..+|..+..+..|++|.++|...-
T Consensus 765 ------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f 838 (1189)
T KOG2041|consen 765 ------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELF 838 (1189)
T ss_pred ------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhh
Confidence 112334445555554444433211111 013356666666666666666666665431
Q ss_pred -------HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006562 511 -------KLDKENKSAYTYLGLALSSIGEYKKAEEAHL 541 (640)
Q Consensus 511 -------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 541 (640)
..-|++...+-.+|..+...|.-++|.+.|-
T Consensus 839 ~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~L 876 (1189)
T KOG2041|consen 839 GELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYL 876 (1189)
T ss_pred hhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHH
Confidence 2224444445555555555555555555544
No 305
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.79 E-value=0.14 Score=39.19 Aligned_cols=64 Identities=20% Similarity=0.199 Sum_probs=36.0
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHcCC
Q 006562 401 ISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA--GEAWKRRGQARAALGE 464 (640)
Q Consensus 401 ~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~ 464 (640)
+..+++.+..+|++..+.+.+|..+...|++++|++.+-.+++.++.. ..+...+-.++..+|.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 445566666677777777777777777777777777777766666543 3344444444444443
No 306
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=95.77 E-value=0.2 Score=49.63 Aligned_cols=126 Identities=15% Similarity=0.114 Sum_probs=103.3
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 006562 391 QVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQ 470 (640)
Q Consensus 391 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~ 470 (640)
.+..|+.-.|-.-...+++..|..|......+.+....|+|+.+...+..+-..-.....+...+-+....+|++++|..
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence 45678898898888999999999999999999999999999999888876655544444555666777888999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 006562 471 DLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN 516 (640)
Q Consensus 471 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 516 (640)
...-.+...-+++++...-+-.....|-++++..++++.+.++|..
T Consensus 379 ~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 379 TAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 9888887777777777777777778888999999999999988754
No 307
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.75 E-value=2 Score=41.28 Aligned_cols=214 Identities=15% Similarity=0.068 Sum_probs=131.9
Q ss_pred HHHccCHHHHHHHHHHHHHhC----CCc----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhC----CC---C------
Q 006562 425 RAFQRELEAAISDFTEAIQSN----PSA----GEAWKRRGQARAALG-ESVEAIQDLSKALEFE----PN---S------ 482 (640)
Q Consensus 425 ~~~~g~~~~A~~~~~~al~~~----p~~----~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~----p~---~------ 482 (640)
.+..|+++.|..++.++-... |+. ...++..|......+ +++.|..+++++.++- +. .
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 356899999999999986654 322 346777888888899 9999999999998872 21 1
Q ss_pred -HHHHHHHHHHHHhcCCHH---HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHH-HH
Q 006562 483 -ADILHERGIVNFKFKDFN---AAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWG-HL 557 (640)
Q Consensus 483 -~~~~~~la~~~~~~~~~~---~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~-~l 557 (640)
..++..++.++...+.++ +|...++.+-...|+.+..+...-.+....++.+.+.+.+.+++...+-....+. .+
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l 162 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHH
Confidence 236778888998887654 5666666666677887887766666666689999999999999886542211111 12
Q ss_pred HHH-HHHhcCHHHHHHHHHHHHHh--CCCChHHHHHH---HHHHHhcC--C------HHHHHHHHHHhhc--cCCCCH--
Q 006562 558 TQF-YQDLANSEKALECLQQVLYI--DKRFSKAYHLR---GLLLHGLG--Q------HKKAIKDLSSGLG--IDPSNI-- 619 (640)
Q Consensus 558 a~~-~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l---a~~~~~~g--~------~~~A~~~~~~al~--~~p~~~-- 619 (640)
..+ .........|...+...+.. .|.... +... ..++...+ + .+.....+....+ ..|-..
T Consensus 163 ~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~-~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~ 241 (278)
T PF08631_consen 163 HHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQ-WLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEA 241 (278)
T ss_pred HHHHHHHhhCcHHHHHHHHHHHHHHhCCChhH-HHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 211 11223345666666666543 332221 2222 22222222 1 2222233332211 122222
Q ss_pred -----HHHHHHHHHHHHcCCccccc
Q 006562 620 -----ECLYLRASCYHAIGEYREAV 639 (640)
Q Consensus 620 -----~~~~~la~~~~~~g~~~~Al 639 (640)
..+++.|...++.++|.+|+
T Consensus 242 ~~a~~~LLW~~~~~~~~~k~y~~A~ 266 (278)
T PF08631_consen 242 ASAIHTLLWNKGKKHYKAKNYDEAI 266 (278)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHH
Confidence 45577888899999999885
No 308
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.67 E-value=2.6 Score=41.96 Aligned_cols=120 Identities=17% Similarity=0.087 Sum_probs=77.3
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH--HHHHHHc---------cCc---ccHHH
Q 006562 489 RGIVNFKFKD-FNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEE--AHLKAIQ---------LDR---NFLEA 553 (640)
Q Consensus 489 la~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~--~~~~a~~---------~~~---~~~~~ 553 (640)
-|.-++..|. -++|+..++.++...|.+.......-.. -...|.+|+. .+.+.+. +.| .+.+.
T Consensus 385 ~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~f--vKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~ei 462 (549)
T PF07079_consen 385 GAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLF--VKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEI 462 (549)
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHH--HHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHH
Confidence 3555666676 7788888888888877775332211111 1111222221 1111111 111 12333
Q ss_pred HHHH--HHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 006562 554 WGHL--TQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSG 611 (640)
Q Consensus 554 ~~~l--a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 611 (640)
-+.+ |..++..|+|.++.-+-.-..+..| ++.++..+|.+.....+|++|..++...
T Consensus 463 an~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 463 ANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 3334 4456789999999999998899999 8999999999999999999999999864
No 309
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.66 E-value=0.017 Score=51.12 Aligned_cols=60 Identities=15% Similarity=0.167 Sum_probs=55.2
Q ss_pred HHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCC
Q 006562 77 FCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQ 136 (640)
Q Consensus 77 ~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~~~~A~~~~~~al~~~~~~ 136 (640)
....+.|+.+.|...+.+++.+-|.+...|+++|....+-|+++.|.+.|++.++++|+.
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 345677899999999999999999999999999999999999999999999999998865
No 310
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.65 E-value=0.19 Score=38.45 Aligned_cols=46 Identities=26% Similarity=0.372 Sum_probs=22.5
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcc
Q 006562 504 EDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549 (640)
Q Consensus 504 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 549 (640)
..+++.+..+|++..+.+.+|..+...|++++|+..+-.++..++.
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~ 54 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRD 54 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TT
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 3444455555555555555555555555555555555555555443
No 311
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=95.56 E-value=0.068 Score=52.72 Aligned_cols=125 Identities=14% Similarity=0.099 Sum_probs=107.0
Q ss_pred HHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006562 426 AFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505 (640)
Q Consensus 426 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~ 505 (640)
+..|+.-.|-.-...++...|.+|......+.+...+|.|+.+...+..+-..-.....+...+-......|++++|...
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~ 379 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALST 379 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHH
Confidence 45689999999999999999999999999999999999999999988777666555556666777888899999999999
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccc
Q 006562 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF 550 (640)
Q Consensus 506 ~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 550 (640)
..-.+...-.++++...-+.....+|-++++...+.+.+.++|..
T Consensus 380 a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 380 AEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 998888877788887777777778899999999999999988754
No 312
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.50 E-value=0.23 Score=41.27 Aligned_cols=83 Identities=12% Similarity=-0.009 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 006562 383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL 462 (640)
Q Consensus 383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 462 (640)
.+..........++.+++..++..+--+.|+.+..-..-|.++...|+|.+|+..++.+....+..+.....++.|+..+
T Consensus 12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al 91 (153)
T TIGR02561 12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAK 91 (153)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhc
Confidence 34444455555778888888888777788888888888888888888888888888888777777777777777777777
Q ss_pred CCH
Q 006562 463 GES 465 (640)
Q Consensus 463 ~~~ 465 (640)
|+.
T Consensus 92 ~Dp 94 (153)
T TIGR02561 92 GDA 94 (153)
T ss_pred CCh
Confidence 764
No 313
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.48 E-value=0.26 Score=38.74 Aligned_cols=44 Identities=16% Similarity=0.125 Sum_probs=21.7
Q ss_pred HHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 006562 536 AEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLY 579 (640)
Q Consensus 536 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 579 (640)
++++|.++..+.|..+..++.+|.-+-....|+++....++++.
T Consensus 63 sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Ls 106 (111)
T PF04781_consen 63 SVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLS 106 (111)
T ss_pred hHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 44555555555555555555555444444444444444444443
No 314
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.46 E-value=1.5 Score=40.34 Aligned_cols=195 Identities=11% Similarity=0.064 Sum_probs=114.0
Q ss_pred hhhHHHHHHHHhhHHHHHhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-----CCCHH-HHHHHHHHHH
Q 006562 353 DMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKED-----PMYPE-ALIGRGTARA 426 (640)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-----~~~~~-~~~~la~~~~ 426 (640)
++.+....+....+...++.-.+....-..++-....+.+..|+|++-...|.+.+..- .+..+ ....+-..-.
T Consensus 37 ~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiS 116 (440)
T KOG1464|consen 37 GLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYIS 116 (440)
T ss_pred cccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHh
Confidence 33333333333333333333333333444567777889999999999999999987531 11111 1111111111
Q ss_pred HccCHHHHHHHHHHHHHh--CCCcHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHH
Q 006562 427 FQRELEAAISDFTEAIQS--NPSAGEAW----KRRGQARAALGESVEAIQDLSKALEFEPN------------SADILHE 488 (640)
Q Consensus 427 ~~g~~~~A~~~~~~al~~--~p~~~~~~----~~la~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~ 488 (640)
...+.+--.+.|+..+.. +..+...| ..+|.+|+..+.|.+-...+++.-..... -.+++..
T Consensus 117 tS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAl 196 (440)
T KOG1464|consen 117 TSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYAL 196 (440)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhh
Confidence 222333333344433322 12233333 45899999999998888877776543211 1235555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCcH--HH----HHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 006562 489 RGIVNFKFKDFNAAVEDLSACVKLDKENK--SA----YTYLGLALSSIGEYKKAEEAHLKAIQLD 547 (640)
Q Consensus 489 la~~~~~~~~~~~A~~~~~~al~~~~~~~--~~----~~~la~~~~~~g~~~~A~~~~~~a~~~~ 547 (640)
-..+|..+.+-..-...|++++.....-| .. .-.=|..+.+.|+|++|...|-+++...
T Consensus 197 EIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNY 261 (440)
T KOG1464|consen 197 EIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNY 261 (440)
T ss_pred HhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcc
Confidence 56778888888888889999987753322 22 2223566788899999999888888764
No 315
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.39 E-value=0.08 Score=55.85 Aligned_cols=112 Identities=22% Similarity=0.249 Sum_probs=90.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHcccCc-----hhHHHhHHHHHHhh--hcHHHHHHHHHHHHHcCCCchHHHHHHH
Q 006562 38 TARIELAKLCSLRNWSKAIRILDSLLAQSYE-----IQDICNRAFCYSQL--ELHKHVIRDCDKALQLDPTLLQAYILKG 110 (640)
Q Consensus 38 ~~~~~~~~~~~~~~y~~Ai~~y~~ai~~~~~-----~~~~~~~A~~~~~~--g~~~~Ai~~~~~al~~~P~~~~a~~~~g 110 (640)
....+....|+.++|..|.--|..++.+.|. ...+.+++.||.++ |+|.+++.+|+.|+...|....+.+.++
T Consensus 55 ~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~ 134 (748)
T KOG4151|consen 55 ELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRA 134 (748)
T ss_pred HHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhh
Confidence 3335666889999999999999999888741 12267899988876 6999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhccCChHHHHHHHhHHHH
Q 006562 111 CAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEEL 149 (640)
Q Consensus 111 ~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~ 149 (640)
..|..+++++=|++...-.....|..+..-.-..++...
T Consensus 135 ~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~l 173 (748)
T KOG4151|consen 135 RKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGL 173 (748)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHH
Confidence 999999999999999888878888875544333344333
No 316
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=95.37 E-value=0.96 Score=35.85 Aligned_cols=93 Identities=22% Similarity=0.219 Sum_probs=55.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHH-------hC
Q 006562 385 LSRGIAQVNEGKYASAISIFDQILKEDPM------------YPEALIGRGTARAFQRELEAAISDFTEAIQ-------SN 445 (640)
Q Consensus 385 ~~~a~~~~~~g~~~~A~~~~~~~l~~~~~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~-------~~ 445 (640)
+..|.-.+..|-|.+|...++++++.... +..++..++..+..+|+|++++....+++. ++
T Consensus 13 Ls~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~ 92 (144)
T PF12968_consen 13 LSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELH 92 (144)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TT
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc
Confidence 34456667778899999999988875322 235666777778888888777666655553 33
Q ss_pred CCcHH----HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006562 446 PSAGE----AWKRRGQARAALGESVEAIQDLSKALE 477 (640)
Q Consensus 446 p~~~~----~~~~la~~~~~~~~~~~A~~~~~~al~ 477 (640)
.+... +.+..+..+...|+.++|+..|+.+-+
T Consensus 93 qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 93 QDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp STHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 33322 223445555566666666666655543
No 317
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=95.26 E-value=5.6 Score=43.25 Aligned_cols=220 Identities=17% Similarity=0.145 Sum_probs=122.8
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCc-------------------HHHHHHHHHHHHHcCCHHHHHHH
Q 006562 418 LIGRGTARAFQRELEAAISDFTEAIQSN-------PSA-------------------GEAWKRRGQARAALGESVEAIQD 471 (640)
Q Consensus 418 ~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~-------------------~~~~~~la~~~~~~~~~~~A~~~ 471 (640)
+..-|.+....+..++|.+++.++++.- +.. .......+.+..-.+++..|...
T Consensus 304 y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~ 383 (608)
T PF10345_consen 304 YFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQE 383 (608)
T ss_pred HHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 3344555566666667777777765421 110 01344566777778999999888
Q ss_pred HHHHHHhC---CC------CHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHHhCCCcH---HHHHHHHHHHHHcC
Q 006562 472 LSKALEFE---PN------SADILHERGIVNFKFKDFNAAVEDLS--------ACVKLDKENK---SAYTYLGLALSSIG 531 (640)
Q Consensus 472 ~~~al~~~---p~------~~~~~~~la~~~~~~~~~~~A~~~~~--------~al~~~~~~~---~~~~~la~~~~~~g 531 (640)
...+.... |. .+..++..|..+...|+.+.|...|. .+....+.+. -+..++..++...+
T Consensus 384 l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~ 463 (608)
T PF10345_consen 384 LEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYES 463 (608)
T ss_pred HHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhc
Confidence 88777653 22 36678889999999999999999998 3333333332 23344566666554
Q ss_pred CHHH----HHHHHHHHHccCcccHHHHHHHHHH-----HH--HhcCHHHHHHHHHHHHHhC-C--C----ChHHHHHHHH
Q 006562 532 EYKK----AEEAHLKAIQLDRNFLEAWGHLTQF-----YQ--DLANSEKALECLQQVLYID-K--R----FSKAYHLRGL 593 (640)
Q Consensus 532 ~~~~----A~~~~~~a~~~~~~~~~~~~~la~~-----~~--~~g~~~~A~~~~~~al~~~-~--~----~~~~~~~la~ 593 (640)
.... +...+...-....+.+..++..+.. +. ..-...++...+..+++.. . + ...++..++.
T Consensus 464 ~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~ 543 (608)
T PF10345_consen 464 SRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGH 543 (608)
T ss_pred ccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 4333 3344433222211111112211111 11 1122336666666666544 1 1 1234556666
Q ss_pred HHHhcCCHHHHHHHHHHhhccCC---CCHHHHH------HHHHHHHHcCCcccc
Q 006562 594 LLHGLGQHKKAIKDLSSGLGIDP---SNIECLY------LRASCYHAIGEYREA 638 (640)
Q Consensus 594 ~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~------~la~~~~~~g~~~~A 638 (640)
.++ .|+..+.......+..... +....++ .++..+...|+.++|
T Consensus 544 ~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka 596 (608)
T PF10345_consen 544 RLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKA 596 (608)
T ss_pred HHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHH
Confidence 666 7888887777666665433 3243332 456667888888776
No 318
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.24 E-value=0.25 Score=50.74 Aligned_cols=90 Identities=21% Similarity=0.203 Sum_probs=76.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHcccCch-------hHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHc
Q 006562 44 AKLCSLRNWSKAIRILDSLLAQSYEI-------QDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSAL 116 (640)
Q Consensus 44 ~~~~~~~~y~~Ai~~y~~ai~~~~~~-------~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~ 116 (640)
+..|+..+|..++..|...+.--+.. ...-+++.||+.+.+.+.|++.++.|=+.||.++-..+.+-.+...-
T Consensus 362 ~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E 441 (872)
T KOG4814|consen 362 KKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAE 441 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHh
Confidence 37799999999999999987543211 11457888999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhc
Q 006562 117 GRKEEALSVWEKGYEHA 133 (640)
Q Consensus 117 g~~~~A~~~~~~al~~~ 133 (640)
|+-++|+.+.......-
T Consensus 442 ~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 442 DKSEEALTCLQKIKSSE 458 (872)
T ss_pred cchHHHHHHHHHHHhhh
Confidence 99999999988886443
No 319
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=95.20 E-value=4 Score=41.24 Aligned_cols=95 Identities=9% Similarity=0.042 Sum_probs=78.8
Q ss_pred HHHHHHHHccc-CchhHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhc
Q 006562 56 IRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGR-KEEALSVWEKGYEHA 133 (640)
Q Consensus 56 i~~y~~ai~~~-~~~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~-~~~A~~~~~~al~~~ 133 (640)
+..|..|...- .|...|.+-..-..+.+.+.+.-..|.++|...|++++.|+-.|.-.+..+. .+.|...|.++|.++
T Consensus 91 v~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~n 170 (568)
T KOG2396|consen 91 VFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFN 170 (568)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcC
Confidence 66788888776 5777777766666666669999999999999999999999999998888776 999999999999999
Q ss_pred cCChHHHHHHHhHHHHH
Q 006562 134 LHQSADLKQFLELEELL 150 (640)
Q Consensus 134 ~~~~~~~~~~~~l~~~~ 150 (640)
|+.|.-+..-.++.-..
T Consensus 171 pdsp~Lw~eyfrmEL~~ 187 (568)
T KOG2396|consen 171 PDSPKLWKEYFRMELMY 187 (568)
T ss_pred CCChHHHHHHHHHHHHH
Confidence 99998776655555443
No 320
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.14 E-value=1.1 Score=46.08 Aligned_cols=136 Identities=18% Similarity=0.107 Sum_probs=100.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 006562 463 GESVEAIQDLSKALEFEPNSADILHE--RGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAH 540 (640)
Q Consensus 463 ~~~~~A~~~~~~al~~~p~~~~~~~~--la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 540 (640)
+...-++..+...+.++|.++..+.. +...+...++...+.-.+..++..+|.+..+..+++......|....+...+
T Consensus 45 ~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~ 124 (620)
T COG3914 45 GLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADI 124 (620)
T ss_pred CchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHH
Confidence 44444677777777777877765433 4666777888888888888999999999888888888888877766665555
Q ss_pred HH-HHccCcccHHHHHHH------HHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhc
Q 006562 541 LK-AIQLDRNFLEAWGHL------TQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGL 598 (640)
Q Consensus 541 ~~-a~~~~~~~~~~~~~l------a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 598 (640)
.. +....|.+......+ +.....+|+..++....+++....|.++.+...+.....+.
T Consensus 125 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~ 189 (620)
T COG3914 125 SEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQ 189 (620)
T ss_pred HHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHh
Confidence 54 777788887766555 77777888888888888888888888866665555553333
No 321
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=95.11 E-value=0.18 Score=40.88 Aligned_cols=82 Identities=22% Similarity=0.152 Sum_probs=61.6
Q ss_pred hHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHc-ccCc--hhHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHH
Q 006562 34 ASAITARIELAKLCS----LRNWSKAIRILDSLLA-QSYE--IQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAY 106 (640)
Q Consensus 34 ~~~~~~~~~~~~~~~----~~~y~~Ai~~y~~ai~-~~~~--~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~ 106 (640)
......+.++++.+- ..|.++.|.+++..+. -.|. -.+.|=+|..++++|+|++++..++..|+.+|+|.++.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 334455577777763 3467889999999997 2232 24456689999999999999999999999999999887
Q ss_pred HHHHHHHHH
Q 006562 107 ILKGCAFSA 115 (640)
Q Consensus 107 ~~~g~~y~~ 115 (640)
.+.-.+.-+
T Consensus 109 ~Lk~~ied~ 117 (149)
T KOG3364|consen 109 ELKETIEDK 117 (149)
T ss_pred HHHHHHHHH
Confidence 776544433
No 322
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.99 E-value=0.38 Score=40.04 Aligned_cols=71 Identities=17% Similarity=0.032 Sum_probs=36.0
Q ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcC
Q 006562 496 FKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN 566 (640)
Q Consensus 496 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~ 566 (640)
.++.+++...+...--+.|+.+..-..-|.++...|+|.+|+..|+......+..+...-.++.|+..+|+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 44555555555554445555555555555555555555555555555544444444444444444444444
No 323
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=94.95 E-value=1.6 Score=44.99 Aligned_cols=136 Identities=21% Similarity=0.096 Sum_probs=105.5
Q ss_pred cCHHHHHHHHHHHHHhCCCcHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006562 429 RELEAAISDFTEAIQSNPSAGEAWKR--RGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506 (640)
Q Consensus 429 g~~~~A~~~~~~al~~~p~~~~~~~~--la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 506 (640)
|....++..+...+..+|.++..+.. +...+...+....+.-.+...+..+|.+..++..++......|....+...+
T Consensus 45 ~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~ 124 (620)
T COG3914 45 GLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADI 124 (620)
T ss_pred CchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHH
Confidence 33344666677777788888776433 4777778899989999999999999999999999999988888776666665
Q ss_pred HH-HHHhCCCcHHHHHHH------HHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHh
Q 006562 507 SA-CVKLDKENKSAYTYL------GLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL 564 (640)
Q Consensus 507 ~~-al~~~~~~~~~~~~l------a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 564 (640)
.. +....|++......+ +.....+|+..++.....++....|.++.....+.....+.
T Consensus 125 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~ 189 (620)
T COG3914 125 SEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQ 189 (620)
T ss_pred HHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHh
Confidence 55 888889887665554 88888899999999999999999999877665555543333
No 324
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=94.62 E-value=2.3 Score=44.61 Aligned_cols=186 Identities=14% Similarity=0.073 Sum_probs=107.5
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH---------HHHHHHHHHHHHcCCHHH
Q 006562 397 YASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG---------EAWKRRGQARAALGESVE 467 (640)
Q Consensus 397 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---------~~~~~la~~~~~~~~~~~ 467 (640)
.++|+++. +-+| ++..|..+|......-.++.|...|-+.-.. |.-. .--...|.+-..-|++++
T Consensus 679 ledA~qfi----EdnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~Gik~vkrl~~i~s~~~q~aei~~~~g~fee 752 (1189)
T KOG2041|consen 679 LEDAIQFI----EDNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDY-AGIKLVKRLRTIHSKEQQRAEISAFYGEFEE 752 (1189)
T ss_pred hHHHHHHH----hcCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cchhHHHHhhhhhhHHHHhHhHhhhhcchhH
Confidence 45555443 3355 4899999999888888888888777665321 1100 001223445555688898
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 006562 468 AIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDK--ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ 545 (640)
Q Consensus 468 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 545 (640)
|.+.|-.+-+. + ....++.+.|+|-...+.++..-.-.. ....++..+|..+..+..|++|.++|...-.
T Consensus 753 aek~yld~drr---D-----LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~ 824 (1189)
T KOG2041|consen 753 AEKLYLDADRR---D-----LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD 824 (1189)
T ss_pred hhhhhhccchh---h-----hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 88887543221 1 223456677888777776665322211 1247888899999999999999998876532
Q ss_pred cCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 006562 546 LDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL 608 (640)
Q Consensus 546 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 608 (640)
. .++..+++....+++-.. ....-|++...+-.+|..+...|.-++|.+.|
T Consensus 825 ~--------e~~~ecly~le~f~~LE~----la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 825 T--------ENQIECLYRLELFGELEV----LARTLPEDSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred h--------HhHHHHHHHHHhhhhHHH----HHHhcCcccchHHHHHHHHHhhchHHHHHHHH
Confidence 2 233444444444443222 22233455555555555555555555555444
No 325
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.59 E-value=0.59 Score=41.23 Aligned_cols=97 Identities=20% Similarity=0.235 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--cH----HHH
Q 006562 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNS---ADILHERGIVNFKFKDFNAAVEDLSACVKLDKE--NK----SAY 520 (640)
Q Consensus 450 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~--~~----~~~ 520 (640)
.++..+|..|...|+.+.|++.|.++....... .+.+..+..+.+..+++.....++.++-..... ++ ...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 345566666666666666666666655543222 345555566666666666666666665443211 11 223
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcc
Q 006562 521 TYLGLALSSIGEYKKAEEAHLKAIQL 546 (640)
Q Consensus 521 ~~la~~~~~~g~~~~A~~~~~~a~~~ 546 (640)
..-|..+...++|..|...|-.+...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCcC
Confidence 34455666667777777776665543
No 326
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=94.51 E-value=0.89 Score=37.05 Aligned_cols=36 Identities=19% Similarity=0.094 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHH
Q 006562 552 EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA 587 (640)
Q Consensus 552 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 587 (640)
+..+.++.-+.+.++|+.++.+.+..++..|++..+
T Consensus 72 e~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 72 ECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred hhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 334444444444555555555555555444444443
No 327
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=94.40 E-value=0.086 Score=32.48 Aligned_cols=29 Identities=28% Similarity=0.216 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 006562 104 QAYILKGCAFSALGRKEEALSVWEKGYEH 132 (640)
Q Consensus 104 ~a~~~~g~~y~~~g~~~~A~~~~~~al~~ 132 (640)
+.|.++|.+-+..++|++|+..|++|+++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 57889999999999999999999999654
No 328
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.36 E-value=3 Score=35.78 Aligned_cols=133 Identities=14% Similarity=-0.043 Sum_probs=69.1
Q ss_pred hcCCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccc----HHHHHHHHHHHHHhcCHH
Q 006562 495 KFKDFNAAVEDLSACVKLDKEN--KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF----LEAWGHLTQFYQDLANSE 568 (640)
Q Consensus 495 ~~~~~~~A~~~~~~al~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~g~~~ 568 (640)
..+..++|+..|...-+..-.. .-+.+..+.+....|+...|+..|.++-...|.- ..+...-+.++...|-|+
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~ 149 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD 149 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence 3445555666555554443222 2344455666666666667777666655443221 123344455556666666
Q ss_pred HHHHHHHHHH-HhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHH
Q 006562 569 KALECLQQVL-YIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASC 628 (640)
Q Consensus 569 ~A~~~~~~al-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 628 (640)
+-....+..- ..+|-...+...||..-++.|++.+|..+|..... +...+..-...+++
T Consensus 150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~ 209 (221)
T COG4649 150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQI 209 (221)
T ss_pred HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHH
Confidence 6554444321 11223334556667777777777777777776654 33333333344443
No 329
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.24 E-value=1.5 Score=44.70 Aligned_cols=229 Identities=16% Similarity=0.070 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006562 398 ASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS--AGEAWKRRGQARAALGESVEAIQDLSKA 475 (640)
Q Consensus 398 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~a 475 (640)
....+.+.......|.++...+..+..+...|+.+.|+..+...+...-. ..-.++.+|.++....+|..|...+...
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L 329 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLL 329 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 44555555666678888888888888888888888888888887761101 1235667888888888999999998888
Q ss_pred HHhCCCCHHHHHHHH-HHHHh--------cCCHHHHHHHHHHH---HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006562 476 LEFEPNSADILHERG-IVNFK--------FKDFNAAVEDLSAC---VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKA 543 (640)
Q Consensus 476 l~~~p~~~~~~~~la-~~~~~--------~~~~~~A~~~~~~a---l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 543 (640)
.....-.-..|..++ .|++. .|+-+.|..+++.. +...|.+...-. .-..++.++-.+.
T Consensus 330 ~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~---------f~~RKverf~~~~ 400 (546)
T KOG3783|consen 330 RDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEK---------FIVRKVERFVKRG 400 (546)
T ss_pred HhhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhH---------HHHHHHHHHhccc
Confidence 877654444444443 44432 22334443333332 222222211100 0011222221111
Q ss_pred HccCcccHH--HHHHHHHHHHHh--cCHHHHHHHHHHHHH---h-CCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHhhcc
Q 006562 544 IQLDRNFLE--AWGHLTQFYQDL--ANSEKALECLQQVLY---I-DKRF-SKAYHLRGLLLHGLGQHKKAIKDLSSGLGI 614 (640)
Q Consensus 544 ~~~~~~~~~--~~~~la~~~~~~--g~~~~A~~~~~~al~---~-~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 614 (640)
- .++..+. .+..++.++..- ...++.. -++.... . ++++ ..-++.+|.++..+|+...|..+|...++.
T Consensus 401 ~-~~~~~~la~P~~El~Y~Wngf~~~s~~~l~-k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~ 478 (546)
T KOG3783|consen 401 P-LNASILLASPYYELAYFWNGFSRMSKNELE-KMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEK 478 (546)
T ss_pred c-ccccccccchHHHHHHHHhhcccCChhhHH-HHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 0 1111111 123333332211 1122222 1111111 1 2222 235678899999999999999999988732
Q ss_pred ---CCC----CHHHHHHHHHHHHHcCC-ccc
Q 006562 615 ---DPS----NIECLYLRASCYHAIGE-YRE 637 (640)
Q Consensus 615 ---~p~----~~~~~~~la~~~~~~g~-~~~ 637 (640)
..+ -|.+++.+|..|..+|. ..+
T Consensus 479 e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e 509 (546)
T KOG3783|consen 479 ESKRTEDLWAVPFALYELALLYWDLGGGLKE 509 (546)
T ss_pred HHhhccccccccHHHHHHHHHHHhcccChHH
Confidence 111 25789999999999887 443
No 330
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.17 E-value=0.86 Score=40.22 Aligned_cols=98 Identities=12% Similarity=0.004 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCccc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CChH----HH
Q 006562 518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF---LEAWGHLTQFYQDLANSEKALECLQQVLYIDK--RFSK----AY 588 (640)
Q Consensus 518 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--~~~~----~~ 588 (640)
.++..+|..|...|+.+.|++.|.++....... .+.+..+.++....+++.....++.++-..-. .+.. ..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 455566666666666666666666665543222 44555666666666777776666666654322 1111 23
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhccC
Q 006562 589 HLRGLLLHGLGQHKKAIKDLSSGLGID 615 (640)
Q Consensus 589 ~~la~~~~~~g~~~~A~~~~~~al~~~ 615 (640)
..-|..+...++|..|...|-.+..-.
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 344666677888888888887765433
No 331
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=94.06 E-value=0.2 Score=50.24 Aligned_cols=102 Identities=22% Similarity=0.133 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---cCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 006562 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQ---RELEAAISDFTEAIQSNPSAGEAWKRRGQ 457 (640)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la~ 457 (640)
.+.....|.-.+..+....|+..|.+++...|.....+.+.+.+++.. |+.-.|+.....++.++|....+++.++.
T Consensus 374 ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~ 453 (758)
T KOG1310|consen 374 IEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLAR 453 (758)
T ss_pred HHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHH
Confidence 333444455555667788899999999999999888888888887764 56677888888899999988999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCC
Q 006562 458 ARAALGESVEAIQDLSKALEFEPNS 482 (640)
Q Consensus 458 ~~~~~~~~~~A~~~~~~al~~~p~~ 482 (640)
++..++++.+|+.....+....|.+
T Consensus 454 aL~el~r~~eal~~~~alq~~~Ptd 478 (758)
T KOG1310|consen 454 ALNELTRYLEALSCHWALQMSFPTD 478 (758)
T ss_pred HHHHHhhHHHhhhhHHHHhhcCchh
Confidence 9999999999999988888888855
No 332
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=93.82 E-value=0.16 Score=47.31 Aligned_cols=81 Identities=7% Similarity=0.077 Sum_probs=42.2
Q ss_pred HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHhCCCcHHH
Q 006562 441 AIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHE-RGIVNFKFKDFNAAVEDLSACVKLDKENKSA 519 (640)
Q Consensus 441 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-la~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 519 (640)
+....|+++..|...+......+.+.+--..|.++++.+|.+.+.|.. -+.-+...++++.+...+.++++.+|++|..
T Consensus 99 ~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~i 178 (435)
T COG5191 99 STNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRI 178 (435)
T ss_pred hhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchH
Confidence 333445555555555555555555555555555555555555555544 2333444455555555555555555555554
Q ss_pred HH
Q 006562 520 YT 521 (640)
Q Consensus 520 ~~ 521 (640)
|.
T Consensus 179 w~ 180 (435)
T COG5191 179 WI 180 (435)
T ss_pred HH
Confidence 44
No 333
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=93.81 E-value=0.11 Score=46.34 Aligned_cols=60 Identities=18% Similarity=0.338 Sum_probs=50.6
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH
Q 006562 390 AQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG 449 (640)
Q Consensus 390 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 449 (640)
.....++.+.|.+.|.+++.+.|.....|+.+|......|+++.|...|++.++++|.+.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 455678888888888888888888888888888888888888888888888888888763
No 334
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=93.71 E-value=0.34 Score=37.57 Aligned_cols=30 Identities=27% Similarity=0.214 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcc
Q 006562 105 AYILKGCAFSALGRKEEALSVWEKGYEHAL 134 (640)
Q Consensus 105 a~~~~g~~y~~~g~~~~A~~~~~~al~~~~ 134 (640)
+...+|.++...|++++|+..++.|+.+..
T Consensus 43 all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 43 ALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555543
No 335
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.70 E-value=5 Score=41.33 Aligned_cols=154 Identities=19% Similarity=0.125 Sum_probs=87.2
Q ss_pred cCHHHHHHHHHHHHHhC------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----C------------
Q 006562 429 RELEAAISDFTEAIQSN------------PSAGEAWKRRGQARAALGESVEAIQDLSKALEF-----E------------ 479 (640)
Q Consensus 429 g~~~~A~~~~~~al~~~------------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~------------ 479 (640)
..|++|...|.-+.... |-+.+.+..++.+...+|+.+-|....++++=. .
T Consensus 252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL 331 (665)
T KOG2422|consen 252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRL 331 (665)
T ss_pred hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccC
Confidence 45777777777666442 444567777777888888888877777777632 1
Q ss_pred ----CCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH-HcCCHHHHHHHHHHHHcc----
Q 006562 480 ----PNSAD---ILHERGIVNFKFKDFNAAVEDLSACVKLDKE-NKSAYTYLGLALS-SIGEYKKAEEAHLKAIQL---- 546 (640)
Q Consensus 480 ----p~~~~---~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~---- 546 (640)
|.+-. +++.....+.+.|-+..|.++.+-.+.++|. +|.+...+..+|. +..+|.--+..++..-..
T Consensus 332 ~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~ 411 (665)
T KOG2422|consen 332 PYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLS 411 (665)
T ss_pred cccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHh
Confidence 11111 2223334445567777777777777777776 6655555444443 345555555555544221
Q ss_pred -CcccHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHhCCC
Q 006562 547 -DRNFLEAWGHLTQFYQDLAN---SEKALECLQQVLYIDKR 583 (640)
Q Consensus 547 -~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~ 583 (640)
.|+. ..-..+|..|..... .+.|...+.+|+...|.
T Consensus 412 ~~PN~-~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 412 QLPNF-GYSLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred hcCCc-hHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 2322 222344555554443 45666666677666553
No 336
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=93.69 E-value=0.75 Score=41.96 Aligned_cols=65 Identities=26% Similarity=0.263 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHhcCHH-------HHHHHHHHHHHhCC------CChHHHHHHHHHHHhcCCHHHHHHHHHHhhccC
Q 006562 551 LEAWGHLTQFYQDLANSE-------KALECLQQVLYIDK------RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGID 615 (640)
Q Consensus 551 ~~~~~~la~~~~~~g~~~-------~A~~~~~~al~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 615 (640)
+..+..+|.+|...|+.+ .|+..|.+++.... +.....+.+|.+..+.|++++|..+|.+++...
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 344555566666555543 34444444443321 224567788888888888888888888888653
No 337
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.67 E-value=0.86 Score=47.06 Aligned_cols=95 Identities=11% Similarity=-0.069 Sum_probs=65.9
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 006562 418 LIGRGTARAFQRELEAAISDFTEAIQSNPSA------GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGI 491 (640)
Q Consensus 418 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 491 (640)
+.+-|.-+++..+|..+++.|...+...|.+ +.....++.||..+.+.+.|.++++.|-+.+|.++-....+..
T Consensus 357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~ 436 (872)
T KOG4814|consen 357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQ 436 (872)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 3445556666777777777777777666554 3355667777777777777777777777777777777677777
Q ss_pred HHHhcCCHHHHHHHHHHHHHh
Q 006562 492 VNFKFKDFNAAVEDLSACVKL 512 (640)
Q Consensus 492 ~~~~~~~~~~A~~~~~~al~~ 512 (640)
+....|..++|+.........
T Consensus 437 ~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 437 SFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHhcchHHHHHHHHHHHhh
Confidence 777777777777776665543
No 338
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=93.62 E-value=0.82 Score=51.51 Aligned_cols=166 Identities=14% Similarity=0.185 Sum_probs=115.3
Q ss_pred cHHHHHHHHHHHHHcCChHHHHH------HHHHHH-HhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------
Q 006562 380 SVDFRLSRGIAQVNEGKYASAIS------IFDQIL-KEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS-------- 444 (640)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~A~~------~~~~~l-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------- 444 (640)
...-....|......|.+.+|.+ .+.... ...|.....+..++.++...|++++|+..-.++.-.
T Consensus 931 ~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~d 1010 (1236)
T KOG1839|consen 931 EAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKD 1010 (1236)
T ss_pred hhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCC
Confidence 34455667777777888887777 444332 356778889999999999999999999988776532
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-
Q 006562 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEF--------EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE- 515 (640)
Q Consensus 445 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~- 515 (640)
.|+....+..++...+..++...|+..+.++..+ .|.-..+..+++.++...++++.|+++++.|...+..
T Consensus 1011 s~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v 1090 (1236)
T KOG1839|consen 1011 SPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKV 1090 (1236)
T ss_pred CHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhh
Confidence 2344567777888888888888888888887764 2333445667777788888888898888888875321
Q ss_pred -------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 006562 516 -------NKSAYTYLGLALSSIGEYKKAEEAHLKAIQ 545 (640)
Q Consensus 516 -------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 545 (640)
....+..++..+...+++..|.........
T Consensus 1091 ~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~ 1127 (1236)
T KOG1839|consen 1091 LGPKELETALSYHALARLFESMKDFRNALEHEKVTYG 1127 (1236)
T ss_pred cCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHH
Confidence 234455556666666666666555544443
No 339
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=93.58 E-value=6.1 Score=41.23 Aligned_cols=176 Identities=13% Similarity=0.026 Sum_probs=85.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHH------HHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCcHHHHHHHHH
Q 006562 386 SRGIAQVNEGKYASAISIFDQI------LKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS--NPSAGEAWKRRGQ 457 (640)
Q Consensus 386 ~~a~~~~~~g~~~~A~~~~~~~------l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~ 457 (640)
.+|..+...|.|.+|.++|.+. ++...+ .-.+..+.-+...|..++-....++-.+- +-+.+. ..|.
T Consensus 637 LlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTD--lRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePk---aAAE 711 (1081)
T KOG1538|consen 637 LLADVFAYQGKFHEAAKLFKRSGHENRALEMYTD--LRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPK---AAAE 711 (1081)
T ss_pred HHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHH--HHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcH---HHHH
Confidence 4566777778888888887653 221111 11233444444455444444443332211 111111 2355
Q ss_pred HHHHcCCHHHHHHHHH----------HHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 006562 458 ARAALGESVEAIQDLS----------KALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLAL 527 (640)
Q Consensus 458 ~~~~~~~~~~A~~~~~----------~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 527 (640)
++...|+.++|+...- -+-+++....+.+...+..+.....+.-|-+.|.+.-. ...+...+
T Consensus 712 mLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD--------~ksiVqlH 783 (1081)
T KOG1538|consen 712 MLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD--------LKSLVQLH 783 (1081)
T ss_pred HhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc--------HHHHhhhe
Confidence 5666666666665431 11122233334444445555555555555555544311 12234455
Q ss_pred HHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 006562 528 SSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQV 577 (640)
Q Consensus 528 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 577 (640)
...++|++|....++.-+.- +.+|+-.|+.+....++++|.+.|.++
T Consensus 784 ve~~~W~eAFalAe~hPe~~---~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 784 VETQRWDEAFALAEKHPEFK---DDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred eecccchHhHhhhhhCcccc---ccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 56677777766655433322 345555566655666666665555544
No 340
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.54 E-value=4.4 Score=41.64 Aligned_cols=160 Identities=14% Similarity=0.034 Sum_probs=91.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Q 006562 388 GIAQVNEGKYASAISIFDQILKEDPMY-PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESV 466 (640)
Q Consensus 388 a~~~~~~g~~~~A~~~~~~~l~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 466 (640)
-......++++++....... +.-|.- ..-....+..+...|..+.|+... .+++..+.+| .+.|+.+
T Consensus 268 fk~av~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~--------~D~~~rFeLA---l~lg~L~ 335 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFV--------TDPDHRFELA---LQLGNLD 335 (443)
T ss_dssp HHHHHHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHS--------S-HHHHHHHH---HHCT-HH
T ss_pred HHHHHHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhc--------CChHHHhHHH---HhcCCHH
Confidence 34456688999987777521 122222 344566677777788777776653 3445555444 5688888
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 006562 467 EAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL 546 (640)
Q Consensus 467 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 546 (640)
.|.+..+. .+++..|..+|...+..|+++-|..+|.++- -+-.+..+|...|+.+.-.+....+...
T Consensus 336 ~A~~~a~~-----~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 336 IALEIAKE-----LDDPEKWKQLGDEALRQGNIELAEECYQKAK--------DFSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHHHCCC-----CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHh-----cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc--------CccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 88766533 3367788889999999999998888888753 2345667777788876666655555443
Q ss_pred CcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 006562 547 DRNFLEAWGHLTQFYQDLANSEKALECLQQV 577 (640)
Q Consensus 547 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 577 (640)
... ...-.++...|+.++.+..+.+.
T Consensus 403 ~~~-----n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 403 GDI-----NIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp T-H-----HHHHHHHHHHT-HHHHHHHHHHT
T ss_pred cCH-----HHHHHHHHHcCCHHHHHHHHHHc
Confidence 322 12223344567777777766543
No 341
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=93.52 E-value=1.1 Score=40.96 Aligned_cols=49 Identities=27% Similarity=0.272 Sum_probs=26.1
Q ss_pred ccCHHHHHHHHHHHHHh----CCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006562 428 QRELEAAISDFTEAIQS----NPS---AGEAWKRRGQARAALGESVEAIQDLSKAL 476 (640)
Q Consensus 428 ~g~~~~A~~~~~~al~~----~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al 476 (640)
...+++|+..|.-++-. ... -+..+..+|++|...|+.+.....+++|+
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al 145 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKAL 145 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHH
Confidence 45677777777666532 111 13445556666666666444444444443
No 342
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=93.43 E-value=0.32 Score=37.75 Aligned_cols=57 Identities=12% Similarity=0.135 Sum_probs=45.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHccc-----Cc-----hhHHHhHHHHHHhhhcHHHHHHHHHHHHHcC
Q 006562 43 LAKLCSLRNWSKAIRILDSLLAQS-----YE-----IQDICNRAFCYSQLELHKHVIRDCDKALQLD 99 (640)
Q Consensus 43 ~~~~~~~~~y~~Ai~~y~~ai~~~-----~~-----~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~ 99 (640)
.....+.|||..|++.+.+..+.. +. ..+..++|..+...|++++|+..+++|+.+-
T Consensus 5 ~~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 5 YLNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 345688999999988888876554 22 1235789999999999999999999999863
No 343
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.43 E-value=0.2 Score=31.68 Aligned_cols=30 Identities=37% Similarity=0.347 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 006562 103 LQAYILKGCAFSALGRKEEALSVWEKGYEH 132 (640)
Q Consensus 103 ~~a~~~~g~~y~~~g~~~~A~~~~~~al~~ 132 (640)
..++..+|.+|..+|++++|+..+++++++
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 356788999999999999999999999554
No 344
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.31 E-value=4.8 Score=34.60 Aligned_cols=117 Identities=15% Similarity=0.137 Sum_probs=52.0
Q ss_pred cCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHhcCCHHHH
Q 006562 429 RELEAAISDFTEAIQSNPSA--GEAWKRRGQARAALGESVEAIQDLSKALEFEPNS----ADILHERGIVNFKFKDFNAA 502 (640)
Q Consensus 429 g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A 502 (640)
+..++|+..|..+-+..-.. .-+....+.+....|+...|+..|..+-...|-. ..+...-+.++...|.|+.-
T Consensus 72 ~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV 151 (221)
T COG4649 72 NKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDV 151 (221)
T ss_pred CCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHH
Confidence 44444554444443332222 1233344455555555555555555544332211 11223334444555555554
Q ss_pred HHHHHHHH-HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 006562 503 VEDLSACV-KLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ 545 (640)
Q Consensus 503 ~~~~~~al-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 545 (640)
....+..- ..+|-...+.-.||...++.|++.+|...|.....
T Consensus 152 ~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 152 SSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 44443321 11222234444555555556666666666555444
No 345
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.31 E-value=4.4 Score=39.97 Aligned_cols=137 Identities=19% Similarity=0.200 Sum_probs=65.6
Q ss_pred HHHcCCh-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc------------CHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 006562 391 QVNEGKY-ASAISIFDQILKEDPMYPEALIGRGTARAFQR------------ELEAAISDFTEAIQSNPSAGEAWKRRGQ 457 (640)
Q Consensus 391 ~~~~g~~-~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g------------~~~~A~~~~~~al~~~p~~~~~~~~la~ 457 (640)
....|.+ .++++.=.+.+..+|+...+|...-.++...- -.++-+.+...+++.+|+...+|+....
T Consensus 38 ~r~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w 117 (421)
T KOG0529|consen 38 KREAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKW 117 (421)
T ss_pred HHhccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 3344555 46677777778888887777765554443321 1233344444444555555555555555
Q ss_pred HHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 006562 458 ARAALG--ESVEAIQDLSKALEFEPNSADILHERGIVNFKF----KDFNAAVEDLSACVKLDKENKSAYTYLGLAL 527 (640)
Q Consensus 458 ~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----~~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 527 (640)
++.+.+ ++..=+...+++++.+|.+-.+|...=.+.... ....+=+.+..+++..++.|..+|.....++
T Consensus 118 ~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL 193 (421)
T KOG0529|consen 118 VLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLL 193 (421)
T ss_pred HHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHH
Confidence 444433 234444455555555554443333222222111 1233344444444444444444444444433
No 346
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=93.31 E-value=0.25 Score=46.12 Aligned_cols=83 Identities=8% Similarity=0.052 Sum_probs=45.7
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHH-HHHHHHHhcCHHHHHHHHHHHHHhCCCChH
Q 006562 508 ACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGH-LTQFYQDLANSEKALECLQQVLYIDKRFSK 586 (640)
Q Consensus 508 ~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 586 (640)
++....|+++..|...+......|.+.+--..|.+++..+|.+.+.|.. .+.-+...++.+.+...|.++++.+|++|.
T Consensus 98 R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~ 177 (435)
T COG5191 98 RSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPR 177 (435)
T ss_pred hhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCch
Confidence 3334445555555555555555555555555666666666666555554 333344455566666666666666665555
Q ss_pred HHHH
Q 006562 587 AYHL 590 (640)
Q Consensus 587 ~~~~ 590 (640)
.|..
T Consensus 178 iw~e 181 (435)
T COG5191 178 IWIE 181 (435)
T ss_pred HHHH
Confidence 5543
No 347
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=93.23 E-value=0.94 Score=51.08 Aligned_cols=161 Identities=17% Similarity=0.196 Sum_probs=101.0
Q ss_pred HHHHHHHHHcCCHHHHHH------HHHH-HHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCcH
Q 006562 453 KRRGQARAALGESVEAIQ------DLSK-ALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKL--------DKENK 517 (640)
Q Consensus 453 ~~la~~~~~~~~~~~A~~------~~~~-al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~~~~~ 517 (640)
...+......|.+.+|.+ .+.+ .-.+.|.....+..++.++...|++++|+..-.++.-+ .|+..
T Consensus 936 ~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~ 1015 (1236)
T KOG1839|consen 936 PEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTK 1015 (1236)
T ss_pred hhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHH
Confidence 334444555556665555 3331 12234555666777777777777777777776665433 23445
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcc--------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-------
Q 006562 518 SAYTYLGLALSSIGEYKKAEEAHLKAIQL--------DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK------- 582 (640)
Q Consensus 518 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~------- 582 (640)
..+..++...+..++...|...+.++... .|.......+++.++...++++.|+.+.+.++....
T Consensus 1016 ~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~ 1095 (1236)
T KOG1839|consen 1016 LAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKE 1095 (1236)
T ss_pred HHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccc
Confidence 56666777777777777777777766553 344455556777777777888888888887776432
Q ss_pred -CChHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 006562 583 -RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLG 613 (640)
Q Consensus 583 -~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 613 (640)
.....+..++..+..++++..|+...+....
T Consensus 1096 l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~ 1127 (1236)
T KOG1839|consen 1096 LETALSYHALARLFESMKDFRNALEHEKVTYG 1127 (1236)
T ss_pred hhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHH
Confidence 2344566777777777777777776665543
No 348
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=93.14 E-value=4.8 Score=41.94 Aligned_cols=213 Identities=14% Similarity=0.090 Sum_probs=116.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHh--------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--
Q 006562 384 RLSRGIAQVNEGKYASAISIFDQILKE--------------DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS-- 447 (640)
Q Consensus 384 ~~~~a~~~~~~g~~~~A~~~~~~~l~~--------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-- 447 (640)
|-.+|...+..=+++-|.+.|.++... ....|. -..+|..+...|.+.+|.+.|.+.-..+..
T Consensus 588 W~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~-~iLlA~~~Ay~gKF~EAAklFk~~G~enRAlE 666 (1081)
T KOG1538|consen 588 WRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPN-DLLLADVFAYQGKFHEAAKLFKRSGHENRALE 666 (1081)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCch-HHHHHHHHHhhhhHHHHHHHHHHcCchhhHHH
Confidence 334455555555666666665554211 111122 345778888889999998888764221110
Q ss_pred --cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHH----------HHHHHhC
Q 006562 448 --AGEAWKRRGQARAALGESVEAIQDLSKALEF--EPNSADILHERGIVNFKFKDFNAAVEDL----------SACVKLD 513 (640)
Q Consensus 448 --~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~----------~~al~~~ 513 (640)
..--.+..++-+...|..++-....++-.+. +-+.+. ..+.++...|+.++|+... +-+-+++
T Consensus 667 myTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePk---aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld 743 (1081)
T KOG1538|consen 667 MYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPK---AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLD 743 (1081)
T ss_pred HHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcH---HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcc
Confidence 0012233455555555555544444432221 111222 2467777888888877643 2222333
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 006562 514 KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGL 593 (640)
Q Consensus 514 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~ 593 (640)
..+.+.+...+..+.....+.-|.+.|.+.-.. -.+..++...++|++|..+.++.-+.- +.+|+-.|+
T Consensus 744 ~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~--------ksiVqlHve~~~W~eAFalAe~hPe~~---~dVy~pyaq 812 (1081)
T KOG1538|consen 744 KAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL--------KSLVQLHVETQRWDEAFALAEKHPEFK---DDVYMPYAQ 812 (1081)
T ss_pred hhhhhHHHHHHHHHhhccccchHHHHHHHhccH--------HHHhhheeecccchHhHhhhhhCcccc---ccccchHHH
Confidence 444555666666666667777777777654321 234556677889999988776654333 334555566
Q ss_pred HHHhcCCHHHHHHHHHHh
Q 006562 594 LLHGLGQHKKAIKDLSSG 611 (640)
Q Consensus 594 ~~~~~g~~~~A~~~~~~a 611 (640)
.+....++++|.+.|.+|
T Consensus 813 wLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 813 WLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred HhhhhhhHHHHHHHHHHh
Confidence 666666666666555544
No 349
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.08 E-value=9 Score=39.58 Aligned_cols=153 Identities=16% Similarity=0.067 Sum_probs=90.8
Q ss_pred CChHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----C------------
Q 006562 395 GKYASAISIFDQILKE------------DPMYPEALIGRGTARAFQRELEAAISDFTEAIQS-----N------------ 445 (640)
Q Consensus 395 g~~~~A~~~~~~~l~~------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~------------ 445 (640)
..|++|...|.-+... .|.+...+..++.+...+|+.+-|....++++-. .
T Consensus 252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL 331 (665)
T KOG2422|consen 252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRL 331 (665)
T ss_pred hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccC
Confidence 3456666666655443 3556677888888888888877777777666511 1
Q ss_pred ----CCcHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH-HhcCCHHHHHHHHHHHH-----H
Q 006562 446 ----PSAGE---AWKRRGQARAALGESVEAIQDLSKALEFEPN-SADILHERGIVN-FKFKDFNAAVEDLSACV-----K 511 (640)
Q Consensus 446 ----p~~~~---~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~-~~~~~~~~A~~~~~~al-----~ 511 (640)
|.+-. +++..-..+.+.|-+..|.++++-.+.++|. ++.+...+..+| ++..+|.--+..++..- .
T Consensus 332 ~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~ 411 (665)
T KOG2422|consen 332 PYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLS 411 (665)
T ss_pred cccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHh
Confidence 11211 2333344556678888888888888888887 665544444443 34556665565555542 2
Q ss_pred hCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHccCc
Q 006562 512 LDKENKSAYTYLGLALSSIGE---YKKAEEAHLKAIQLDR 548 (640)
Q Consensus 512 ~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~~ 548 (640)
.-|+- ..-..+|..|..... -..|...+.+|+...|
T Consensus 412 ~~PN~-~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 412 QLPNF-GYSLALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred hcCCc-hHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 22332 222334555555444 4567777888877766
No 350
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.69 E-value=12 Score=38.64 Aligned_cols=43 Identities=23% Similarity=0.210 Sum_probs=21.0
Q ss_pred HccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006562 427 FQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSK 474 (640)
Q Consensus 427 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 474 (640)
+.|+.+.|.+..++ .+++..|..+|......|+++-|..+|++
T Consensus 330 ~lg~L~~A~~~a~~-----~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k 372 (443)
T PF04053_consen 330 QLGNLDIALEIAKE-----LDDPEKWKQLGDEALRQGNIELAEECYQK 372 (443)
T ss_dssp HCT-HHHHHHHCCC-----CSTHHHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHh-----cCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 44555555444322 12444555555555555555555555554
No 351
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.17 E-value=1.8 Score=40.93 Aligned_cols=60 Identities=20% Similarity=0.216 Sum_probs=56.0
Q ss_pred HHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006562 72 ICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYE 131 (640)
Q Consensus 72 ~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~~~~A~~~~~~al~ 131 (640)
+...+..+...|+++.++..+++.+..+|.+-.+|.++=.+|...|+...|+..|++.-.
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 356888899999999999999999999999999999999999999999999999999844
No 352
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=92.14 E-value=13 Score=36.68 Aligned_cols=127 Identities=13% Similarity=0.019 Sum_probs=66.0
Q ss_pred HHHHcCChHHHHHHHHHHHHhCC-C--------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC------CcHHHHHH
Q 006562 390 AQVNEGKYASAISIFDQILKEDP-M--------YPEALIGRGTARAFQRELEAAISDFTEAIQSNP------SAGEAWKR 454 (640)
Q Consensus 390 ~~~~~g~~~~A~~~~~~~l~~~~-~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~ 454 (640)
.++.+.++.+|..+-+..+..-. . .+..|+.+..+|...|+...-...+...+.... ..+.....
T Consensus 135 fl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~ 214 (493)
T KOG2581|consen 135 FLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINL 214 (493)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHH
Confidence 33445677777776665543211 0 134556666666666665544444443332211 11233444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 006562 455 RGQARAALGESVEAIQDLSKALEF--EPN--SADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN 516 (640)
Q Consensus 455 la~~~~~~~~~~~A~~~~~~al~~--~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 516 (640)
+-+.|...+.|+.|-....+..-- ..+ .....+.+|.+..-+++|..|.+++-+|+...|++
T Consensus 215 LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 215 LLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 556666666666666555544311 111 12344556666666666666666666666666653
No 353
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.07 E-value=10 Score=37.61 Aligned_cols=160 Identities=21% Similarity=0.224 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC-
Q 006562 431 LEAAISDFTEAIQSNPSAGEAWKRRGQARAALG------------ESVEAIQDLSKALEFEPNSADILHERGIVNFKFK- 497 (640)
Q Consensus 431 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~------------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~- 497 (640)
-.++++.-.+.+..+|+...+|...-.++...- ..++-+.+...+++.+|+...+|+.+..++.+.+
T Consensus 45 d~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~ 124 (421)
T KOG0529|consen 45 DEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPH 124 (421)
T ss_pred chHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCC
Confidence 345777778888888888777766544443221 2344455666667777777777777777776555
Q ss_pred -CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC----CHHHHHHHHHHHHccCcccHHHHHHHHHHHHHh------cC
Q 006562 498 -DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIG----EYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL------AN 566 (640)
Q Consensus 498 -~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~------g~ 566 (640)
++..=+...+++++.+|.+..+|...-.+..... ...+=+.+..+++..++.+..+|.+...++... |+
T Consensus 125 ~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~ 204 (421)
T KOG0529|consen 125 SDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGN 204 (421)
T ss_pred chHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCc
Confidence 3566667777777777776655554443333322 234456666666666666666776666555421 21
Q ss_pred ------HHHHHHHHHHHHHhCCCChHHHHH
Q 006562 567 ------SEKALECLQQVLYIDKRFSKAYHL 590 (640)
Q Consensus 567 ------~~~A~~~~~~al~~~~~~~~~~~~ 590 (640)
...-++....++-.+|++..+|+.
T Consensus 205 ~~~~~~l~sEle~v~saiFTdp~DqS~WfY 234 (421)
T KOG0529|consen 205 FMPKELLQSELEMVHSAIFTDPEDQSCWFY 234 (421)
T ss_pred cCCHHHHHHHHHHHHHHHhcCccccceeee
Confidence 122334444455556666666655
No 354
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=91.99 E-value=12 Score=35.97 Aligned_cols=165 Identities=14% Similarity=0.056 Sum_probs=108.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh----CC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----CCcH--HH
Q 006562 453 KRRGQARAALGESVEAIQDLSKALEF----EP--NSADILHERGIVNFKFKDFNAAVEDLSACVKLD-----KENK--SA 519 (640)
Q Consensus 453 ~~la~~~~~~~~~~~A~~~~~~al~~----~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----~~~~--~~ 519 (640)
..+..+|...++|.+|+......+.- +. .-.+++..-...|....+..+|...+..|-... |... ..
T Consensus 132 arli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~l 211 (411)
T KOG1463|consen 132 ARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATL 211 (411)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHH
Confidence 45678888999999998887766543 21 224566667788888888888888887775432 2111 22
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHccCcc---cHH---HHHHHHHHHHHhcCHHHHHHHH--HHHHHhCCCChHHHHHH
Q 006562 520 YTYLGLALSSIGEYKKAEEAHLKAIQLDRN---FLE---AWGHLTQFYQDLANSEKALECL--QQVLYIDKRFSKAYHLR 591 (640)
Q Consensus 520 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~---~~~---~~~~la~~~~~~g~~~~A~~~~--~~al~~~~~~~~~~~~l 591 (640)
-..-|..+....+|..|..+|-++++-... +.. ++-++-.+-...+..++--..+ +.+++.......+....
T Consensus 212 DLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~Amkav 291 (411)
T KOG1463|consen 212 DLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAV 291 (411)
T ss_pred HHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHH
Confidence 223366677778999999999999875421 122 2233333334455555544433 45566666777888888
Q ss_pred HHHHHh--cCCHHHHHHHHHHhhccCCC
Q 006562 592 GLLLHG--LGQHKKAIKDLSSGLGIDPS 617 (640)
Q Consensus 592 a~~~~~--~g~~~~A~~~~~~al~~~p~ 617 (640)
+.++.. +.+|+.|+..|..-+..+|-
T Consensus 292 AeA~~nRSLkdF~~AL~~yk~eL~~D~i 319 (411)
T KOG1463|consen 292 AEAFGNRSLKDFEKALADYKKELAEDPI 319 (411)
T ss_pred HHHhcCCcHHHHHHHHHHhHHHHhcChH
Confidence 888765 45889999999887776663
No 355
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=91.92 E-value=14 Score=41.86 Aligned_cols=131 Identities=21% Similarity=0.185 Sum_probs=91.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHc----c---CHHHHHHHHHHHHHhCCCcHHHHHH
Q 006562 385 LSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQ----R---ELEAAISDFTEAIQSNPSAGEAWKR 454 (640)
Q Consensus 385 ~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~----g---~~~~A~~~~~~al~~~p~~~~~~~~ 454 (640)
+....+++....|+.|+..|+++-...|.. .++.+..|.....+ | .+++|+..|++.- ..|.-|--|..
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 557 (932)
T PRK13184 479 LAVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLG 557 (932)
T ss_pred ccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHh
Confidence 445567788899999999999999998875 46777777776543 2 4777777777753 34556677888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHhCCCc
Q 006562 455 RGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKF-----KDFNAAVEDLSACVKLDKEN 516 (640)
Q Consensus 455 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----~~~~~A~~~~~~al~~~~~~ 516 (640)
.|.+|..+|++++-++++.-+++..|.++.+-...-.+-+++ .+-..|....--++...|..
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (932)
T PRK13184 558 KALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEK 624 (932)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 899999999999999999999999998876433322222221 12234444444555555543
No 356
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.86 E-value=0.32 Score=30.63 Aligned_cols=30 Identities=17% Similarity=0.189 Sum_probs=25.4
Q ss_pred hHHHhHHHHHHhhhcHHHHHHHHHHHHHcC
Q 006562 70 QDICNRAFCYSQLELHKHVIRDCDKALQLD 99 (640)
Q Consensus 70 ~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~ 99 (640)
..+.++|.+|..+|++++|+..+++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 357899999999999999999999998764
No 357
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=91.82 E-value=0.27 Score=27.35 Aligned_cols=24 Identities=25% Similarity=0.223 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Q 006562 104 QAYILKGCAFSALGRKEEALSVWE 127 (640)
Q Consensus 104 ~a~~~~g~~y~~~g~~~~A~~~~~ 127 (640)
.+++.+|.++..+|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356667777777777777776554
No 358
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=91.44 E-value=18 Score=36.90 Aligned_cols=93 Identities=13% Similarity=-0.058 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 006562 416 EALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFK 495 (640)
Q Consensus 416 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 495 (640)
.++..+-.++.....+.-....+.+++... .+..++..++.+|... ..++-...+++.++.+-++...-..++..|.+
T Consensus 67 ~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk 144 (711)
T COG1747 67 SCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK 144 (711)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 333344444444444444455555555443 3444555566666555 44455555666666655555555555555544
Q ss_pred cCCHHHHHHHHHHHHH
Q 006562 496 FKDFNAAVEDLSACVK 511 (640)
Q Consensus 496 ~~~~~~A~~~~~~al~ 511 (640)
++.+.+..+|.+++.
T Consensus 145 -ik~sk~a~~f~Ka~y 159 (711)
T COG1747 145 -IKKSKAAEFFGKALY 159 (711)
T ss_pred -hchhhHHHHHHHHHH
Confidence 555666666666554
No 359
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=91.31 E-value=1.2 Score=43.68 Aligned_cols=61 Identities=20% Similarity=0.007 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006562 416 EALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKAL 476 (640)
Q Consensus 416 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 476 (640)
.+-..+..||..+++.+.|+....+.+..+|....-+...|.++..+.+|.+|...+--+.
T Consensus 229 fIetklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 229 FIETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred HHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456789999999999999999999999999999999999999999999999887665543
No 360
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=91.02 E-value=1.3 Score=41.23 Aligned_cols=68 Identities=18% Similarity=0.095 Sum_probs=60.9
Q ss_pred HhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHHH
Q 006562 73 CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADL 140 (640)
Q Consensus 73 ~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 140 (640)
-+.=..+.+.++++.|....++.+.++|+++.-+-=+|.+|.++|-+.-|+..++..++..|+.+...
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~ 252 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAE 252 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHH
Confidence 35556788899999999999999999999999999999999999999999999999999999887653
No 361
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=91.01 E-value=14 Score=34.67 Aligned_cols=161 Identities=17% Similarity=0.122 Sum_probs=89.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----CCcHHHH--H
Q 006562 455 RGQARAALGESVEAIQDLSKALEF------EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD-----KENKSAY--T 521 (640)
Q Consensus 455 la~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----~~~~~~~--~ 521 (640)
+..+++..|+|.+|+......+.- .|.-..++..-..+|....+..++...+..+-... |....+. .
T Consensus 131 li~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL 210 (421)
T COG5159 131 LIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDL 210 (421)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHH
Confidence 456677788888888776665532 23334566666777777777777777666654432 3222222 2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHccCcc---cHHHH-----HHHHHHHHHhcCHHHHHHHHH--HHHH-hCCCChHHHHH
Q 006562 522 YLGLALSSIGEYKKAEEAHLKAIQLDRN---FLEAW-----GHLTQFYQDLANSEKALECLQ--QVLY-IDKRFSKAYHL 590 (640)
Q Consensus 522 ~la~~~~~~g~~~~A~~~~~~a~~~~~~---~~~~~-----~~la~~~~~~g~~~~A~~~~~--~al~-~~~~~~~~~~~ 590 (640)
.-|..+....+|.-|..+|-++++-... +..+. ..+..+. .+..++-...+. ..++ .+.....+...
T Consensus 211 ~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc~sLkYmlLSkIM--lN~~~evk~vl~~K~t~~~y~~r~I~am~a 288 (421)
T COG5159 211 LSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKACVSLKYMLLSKIM--LNRREEVKAVLRNKNTLKHYDDRMIRAMLA 288 (421)
T ss_pred hccceeeccccchhHHHHHHHHHhccccccchHHHHHHHHHHHHHHHH--HhhHHHHHHHHccchhHhhhhhhhHHHHHH
Confidence 2355566677888888888888765322 22222 2223322 233333322222 2222 22334455666
Q ss_pred HHHHHHh--cCCHHHHHHHHHHhhccCCC
Q 006562 591 RGLLLHG--LGQHKKAIKDLSSGLGIDPS 617 (640)
Q Consensus 591 la~~~~~--~g~~~~A~~~~~~al~~~p~ 617 (640)
.+..+.. +.+|..|+..|..-+..+|-
T Consensus 289 vaea~~NRsL~df~~aL~qY~~el~~D~~ 317 (421)
T COG5159 289 VAEAFGNRSLKDFSDALAQYSDELHQDSF 317 (421)
T ss_pred HHHHhCCCcHhhHHHHHHHhhHHhccCHH
Confidence 6666543 45788888888877666553
No 362
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=90.78 E-value=1 Score=37.75 Aligned_cols=53 Identities=23% Similarity=0.142 Sum_probs=43.7
Q ss_pred hhHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHH
Q 006562 69 IQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEE 121 (640)
Q Consensus 69 ~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~~~~ 121 (640)
......+|...+..|+|+-|...++.++..+|++.++...++.+|.++|.-.+
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 33357888999999999999999999999999999999999999999986544
No 363
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=90.71 E-value=3.3 Score=38.62 Aligned_cols=71 Identities=23% Similarity=0.181 Sum_probs=54.5
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHH
Q 006562 555 GHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR 625 (640)
Q Consensus 555 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 625 (640)
.++=..+...++++.|....++.+.++|.++.-+.-.|.+|.++|.+.-|+..++..++..|+++.+-...
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir 255 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIR 255 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHH
Confidence 34455567778888888888888888888888888888888888888888888888888888877554433
No 364
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=90.56 E-value=1.8 Score=31.63 Aligned_cols=52 Identities=10% Similarity=-0.020 Sum_probs=32.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHcccCchhH----HHhHHHHHHhhhcHHHHHHHHH
Q 006562 42 ELAKLCSLRNWSKAIRILDSLLAQSYEIQD----ICNRAFCYSQLELHKHVIRDCD 93 (640)
Q Consensus 42 ~~~~~~~~~~y~~Ai~~y~~ai~~~~~~~~----~~~~A~~~~~~g~~~~Ai~~~~ 93 (640)
++-++|.+.+.++|+..++++++..+++.. +--++.+|...|+|++++...-
T Consensus 12 ~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~ 67 (80)
T PF10579_consen 12 KGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFAL 67 (80)
T ss_pred HHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344667777777777777777776633322 2344556777777777766543
No 365
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=90.05 E-value=27 Score=36.52 Aligned_cols=184 Identities=13% Similarity=-0.038 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Q 006562 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD-KENKSAYTYLGLALS 528 (640)
Q Consensus 450 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~ 528 (640)
..|......-...|+++...-.|++++---....+.|...+......|+.+-|...+..+.+.. |..+.....-+.+-.
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e 377 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEE 377 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHH
Confidence 4555666666777888888888888877666677788888888877888888887777777654 566777777777777
Q ss_pred HcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHH---HHHHHHHhCCC---ChHHHHHHHHH-HHhcCCH
Q 006562 529 SIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALE---CLQQVLYIDKR---FSKAYHLRGLL-LHGLGQH 601 (640)
Q Consensus 529 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~---~~~~al~~~~~---~~~~~~~la~~-~~~~g~~ 601 (640)
..|++..|...+++.....|+...+-...+.....+|+.+.+.. ++.....-..+ ....+...+.. +.-.++.
T Consensus 378 ~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~ 457 (577)
T KOG1258|consen 378 SNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDA 457 (577)
T ss_pred hhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCH
Confidence 78888888888888887777777777777777777787777773 22222211111 12233334443 3346777
Q ss_pred HHHHHHHHHhhccCCCCHHHHHHHHHHHHHcC
Q 006562 602 KKAIKDLSSGLGIDPSNIECLYLRASCYHAIG 633 (640)
Q Consensus 602 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 633 (640)
+.|...+.++++..|.+...+..+..+....+
T Consensus 458 ~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 458 DLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 88888888888888887777766666555443
No 366
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=89.90 E-value=22 Score=35.23 Aligned_cols=102 Identities=12% Similarity=0.038 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-----C-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CC--CcHH
Q 006562 381 VDFRLSRGIAQVNEGKYASAISIFDQILKED-----P-MYPEALIGRGTARAFQRELEAAISDFTEAIQS--NP--SAGE 450 (640)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-----~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p--~~~~ 450 (640)
+..|+.....+-..|+...-...+...+... . ........+-..|...+.|+.|.....+..-- .. ..+.
T Consensus 169 ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~AR 248 (493)
T KOG2581|consen 169 AKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWAR 248 (493)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHH
Confidence 4466777777777888777666666655432 1 12344566778888889999998888776411 11 2245
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 006562 451 AWKRRGQARAALGESVEAIQDLSKALEFEPNS 482 (640)
Q Consensus 451 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 482 (640)
.++.+|.+..-.++|..|.+++-+++...|.+
T Consensus 249 Y~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 249 YLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 67789999999999999999999999999975
No 367
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=89.60 E-value=3.2 Score=36.86 Aligned_cols=54 Identities=17% Similarity=0.194 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHhcCCHHHHH
Q 006562 551 LEAWGHLTQFYQDLANSEKALECLQQVLYIDKR----FSKAYHLRGLLLHGLGQHKKAI 605 (640)
Q Consensus 551 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~la~~~~~~g~~~~A~ 605 (640)
++..+.+|..|. ..+.++++..+.+++++.+. +++++..++.++..+|+++.|.
T Consensus 141 ~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 141 AELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 445555554444 34455555555555554332 2455555555555555555543
No 368
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=89.44 E-value=0.74 Score=28.39 Aligned_cols=29 Identities=21% Similarity=0.088 Sum_probs=25.3
Q ss_pred HHHhHHHHHHhhhcHHHHHHHHHHHHHcC
Q 006562 71 DICNRAFCYSQLELHKHVIRDCDKALQLD 99 (640)
Q Consensus 71 ~~~~~A~~~~~~g~~~~Ai~~~~~al~~~ 99 (640)
+|..+|.+-+..++|++|+.++++||++.
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 46778888899999999999999999864
No 369
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=89.37 E-value=4.8 Score=29.49 Aligned_cols=60 Identities=7% Similarity=0.030 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHH---HHHHHHHHccCHHHHHHHHHHHH
Q 006562 383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALI---GRGTARAFQRELEAAISDFTEAI 442 (640)
Q Consensus 383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~---~la~~~~~~g~~~~A~~~~~~al 442 (640)
-.+..|.-++...+.++|+..+.++++..++.+..+. .+..+|...|+|.+++.+..+-+
T Consensus 8 ~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~ 70 (80)
T PF10579_consen 8 QQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQL 70 (80)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677777777788777777777666554443 34455666777777666655444
No 370
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=89.25 E-value=0.73 Score=25.57 Aligned_cols=23 Identities=22% Similarity=0.056 Sum_probs=12.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH
Q 006562 587 AYHLRGLLLHGLGQHKKAIKDLS 609 (640)
Q Consensus 587 ~~~~la~~~~~~g~~~~A~~~~~ 609 (640)
+...+|.++...|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34455555555555555555443
No 371
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=89.22 E-value=19 Score=33.72 Aligned_cols=53 Identities=11% Similarity=0.036 Sum_probs=35.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHccCHHHHHHH
Q 006562 385 LSRGIAQVNEGKYASAISIFDQILKEDPM--------YPEALIGRGTARAFQRELEAAISD 437 (640)
Q Consensus 385 ~~~a~~~~~~g~~~~A~~~~~~~l~~~~~--------~~~~~~~la~~~~~~g~~~~A~~~ 437 (640)
+.+|......+++++|+..|.+++..... ...+...++.+|...|++..--+.
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~ 67 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDT 67 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHH
Confidence 56677777888888888888888765211 234566777777777776654333
No 372
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=88.98 E-value=22 Score=34.04 Aligned_cols=113 Identities=18% Similarity=0.084 Sum_probs=55.2
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Q 006562 390 AQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAI 469 (640)
Q Consensus 390 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~ 469 (640)
...+..+..+-++....+++++|..+.++..++.--. .-..+|...++++++... ..+...+.....|...+|.
T Consensus 193 ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEEa--~Ti~~AE~l~k~ALka~e----~~yr~sqq~qh~~~~~da~ 266 (556)
T KOG3807|consen 193 KAWRERNPPARIKAAYQALEINNECATAYVLLAEEEA--TTIVDAERLFKQALKAGE----TIYRQSQQCQHQSPQHEAQ 266 (556)
T ss_pred HHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhhh--hhHHHHHHHHHHHHHHHH----HHHhhHHHHhhhccchhhh
Confidence 3444555566666666666666666666665554322 224456666666655421 1111222222222211111
Q ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 006562 470 QDLSKALEFEPN-SADILHERGIVNFKFKDFNAAVEDLSACVKLDK 514 (640)
Q Consensus 470 ~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 514 (640)
.+.+-+ ...+...++.|..++|+..+|++.++...+..|
T Consensus 267 ------~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 267 ------LRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred ------hhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 111111 122344566677777777777777776666555
No 373
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=88.96 E-value=21 Score=33.82 Aligned_cols=25 Identities=12% Similarity=0.129 Sum_probs=14.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHH
Q 006562 482 SADILHERGIVNFKFKDFNAAVEDL 506 (640)
Q Consensus 482 ~~~~~~~la~~~~~~~~~~~A~~~~ 506 (640)
++..+..+|..+++.|++.+|..+|
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHH
Confidence 4556666666666666666655554
No 374
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=88.35 E-value=2.7 Score=39.26 Aligned_cols=57 Identities=23% Similarity=0.196 Sum_probs=53.3
Q ss_pred HhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006562 73 CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKG 129 (640)
Q Consensus 73 ~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~~~~A~~~~~~a 129 (640)
...|..|...|.+.+|+..+++++++||=+-..+..+-.+|..+|+--+|.+.|++-
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 567788999999999999999999999999999999999999999999999988887
No 375
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=87.88 E-value=3.3 Score=39.16 Aligned_cols=63 Identities=21% Similarity=0.160 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006562 415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALE 477 (640)
Q Consensus 415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 477 (640)
..++..++..+...|+++.+++.+++.+..+|.+...|..+-..|...|+...|+..|+++-.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 445555666666666666666666666666666666666666666666666666666665544
No 376
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=87.36 E-value=2.4 Score=25.81 Aligned_cols=6 Identities=17% Similarity=0.296 Sum_probs=1.8
Q ss_pred cCHHHH
Q 006562 429 RELEAA 434 (640)
Q Consensus 429 g~~~~A 434 (640)
|++++|
T Consensus 15 ~ky~~A 20 (36)
T PF07720_consen 15 GKYDEA 20 (36)
T ss_dssp T-HHHH
T ss_pred hhHHHH
Confidence 333333
No 377
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=87.23 E-value=13 Score=37.60 Aligned_cols=62 Identities=16% Similarity=0.197 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHH--HH--HHHHHHHHHccCHHHHHHHHHHHHHh
Q 006562 383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPE--AL--IGRGTARAFQRELEAAISDFTEAIQS 444 (640)
Q Consensus 383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~--~~--~~la~~~~~~g~~~~A~~~~~~al~~ 444 (640)
.....+..++..++|..|..++..+...-|.... .+ ...|..++..-++.+|.+.++..+..
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3456678889999999999999999986333333 33 33455667788999999999998765
No 378
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=86.96 E-value=2.4 Score=42.52 Aligned_cols=87 Identities=11% Similarity=0.085 Sum_probs=61.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHH-------cccCchhH-------HHhHHHHHHhhhcHHHHHHHHHHHHHcC---------
Q 006562 43 LAKLCSLRNWSKAIRILDSLL-------AQSYEIQD-------ICNRAFCYSQLELHKHVIRDCDKALQLD--------- 99 (640)
Q Consensus 43 ~~~~~~~~~y~~Ai~~y~~ai-------~~~~~~~~-------~~~~A~~~~~~g~~~~Ai~~~~~al~~~--------- 99 (640)
|..+..+.+..+-++.+.+.. +....+.. ...+.+.+.-+|+|..|+..++. |+++
T Consensus 82 L~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~ 160 (404)
T PF10255_consen 82 LYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVP 160 (404)
T ss_pred HHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhc-cCcccchhhccCc
Confidence 445556666666666665532 11222222 24677888999999999998764 3333
Q ss_pred CCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006562 100 PTLLQAYILKGCAFSALGRKEEALSVWEKGY 130 (640)
Q Consensus 100 P~~~~a~~~~g~~y~~~g~~~~A~~~~~~al 130 (640)
+-++..+|..|-+|+.+++|.+|++.|...+
T Consensus 161 ~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 161 ACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred chheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356689999999999999999999999995
No 379
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=86.82 E-value=2.7 Score=25.58 Aligned_cols=32 Identities=22% Similarity=0.350 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHH--HHHHhCCC
Q 006562 382 DFRLSRGIAQVNEGKYASAISIFD--QILKEDPM 413 (640)
Q Consensus 382 ~~~~~~a~~~~~~g~~~~A~~~~~--~~l~~~~~ 413 (640)
+.++.+|..+...|++++|+..|+ -+...++.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 567888999999999999999944 77766664
No 380
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=86.63 E-value=22 Score=31.78 Aligned_cols=77 Identities=18% Similarity=0.137 Sum_probs=50.6
Q ss_pred HHccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHhcCCHH
Q 006562 426 AFQRELEAAISDFTEAIQSN-PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPN----SADILHERGIVNFKFKDFN 500 (640)
Q Consensus 426 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~~~~~ 500 (640)
+..-.-+.|...|-++-... -++++..+.+|..|. ..+.++++..+.+++++.+. +++++..++.++...|+++
T Consensus 117 Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 117 WSRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 33333455666665543221 135667777777665 56778888888888877543 3778888888888888888
Q ss_pred HHH
Q 006562 501 AAV 503 (640)
Q Consensus 501 ~A~ 503 (640)
.|.
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 774
No 381
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=86.61 E-value=32 Score=33.23 Aligned_cols=188 Identities=11% Similarity=0.008 Sum_probs=109.9
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006562 430 ELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS-ADILHERGIVNFKFKDFNAAVEDLSA 508 (640)
Q Consensus 430 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~ 508 (640)
--++|+..-.-...+.|..++++-.++.+.++..+.. -..+++- +..+..--...+..+-.+++...+.+
T Consensus 211 Lc~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~---------AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~r 281 (415)
T COG4941 211 LCDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRP---------ARFDADGEPVLLEDQDRSLWDRALIDEGLALLDR 281 (415)
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhh---------hccCCCCCeeeccccchhhhhHHHHHHHHHHHHH
Confidence 3567888877788888888888777776665432211 1111110 00011111112233345677777777
Q ss_pred HHHhCC-CcHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--
Q 006562 509 CVKLDK-ENKSAYTYLGLALSS-----IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI-- 580 (640)
Q Consensus 509 al~~~~-~~~~~~~~la~~~~~-----~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-- 580 (640)
++.... .-....-.++-++.. .-+|..-..+|.-.....|+ |.+-.+.+....+..-.+.++...+-....
T Consensus 282 A~~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~ 360 (415)
T COG4941 282 ALASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPS-PVVTLNRAVALAMREGPAAGLAMVEALLARPR 360 (415)
T ss_pred HHHcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhhHHhHHHHHHHhhcccc
Confidence 776643 222333333333333 23565555566655555554 555556666655555567777776665543
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHH
Q 006562 581 DKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS 627 (640)
Q Consensus 581 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 627 (640)
-..+...+...|.++.+.|+.++|...|++++.+.++..+..+....
T Consensus 361 L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~r 407 (415)
T COG4941 361 LDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQR 407 (415)
T ss_pred cccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 22444567778899999999999999999999998887765554433
No 382
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.98 E-value=64 Score=36.16 Aligned_cols=58 Identities=19% Similarity=0.092 Sum_probs=40.5
Q ss_pred HHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchH----HHHHH-HHHHHHcCCHHHHHHHHHHH
Q 006562 72 ICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ----AYILK-GCAFSALGRKEEALSVWEKG 129 (640)
Q Consensus 72 ~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~----a~~~~-g~~y~~~g~~~~A~~~~~~a 129 (640)
+-..-..+++...|++|+..++-...-+|.-.. ...+. |.-++..|+|++|+..|+++
T Consensus 310 ~~~qi~~lL~~k~fe~ai~L~e~~~~~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~ 372 (877)
T KOG2063|consen 310 FEKQIQDLLQEKSFEEAISLAEILDSPNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKS 372 (877)
T ss_pred hHHHHHHHHHhhhHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Confidence 344555667777788888888777766665322 12222 66788999999999999998
No 383
>PRK11619 lytic murein transglycosylase; Provisional
Probab=85.70 E-value=60 Score=35.52 Aligned_cols=123 Identities=11% Similarity=-0.009 Sum_probs=77.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhc
Q 006562 490 GIVNFKFKDFNAAVEDLSACVKLDKENK----SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565 (640)
Q Consensus 490 a~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g 565 (640)
+..-....+.+.|...+.+......-+. .++..+|.-....+..++|...+..+.... .+.........+....+
T Consensus 248 ~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~-~~~~~~e~r~r~Al~~~ 326 (644)
T PRK11619 248 AFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS-QSTSLLERRVRMALGTG 326 (644)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc-CCcHHHHHHHHHHHHcc
Confidence 3334455567778887776544443222 233334443333332567777777654332 23333444444555788
Q ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 006562 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLG 613 (640)
Q Consensus 566 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 613 (640)
+++.+...+...-..........+.+|..+...|+.++|..+|+++..
T Consensus 327 dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 327 DRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred CHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 998888777775444445677888999998889999999999999854
No 384
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=84.72 E-value=1.9 Score=27.69 Aligned_cols=25 Identities=8% Similarity=0.041 Sum_probs=20.6
Q ss_pred HhHHHHHHhhhcHHHHHHHHHHHHH
Q 006562 73 CNRAFCYSQLELHKHVIRDCDKALQ 97 (640)
Q Consensus 73 ~~~A~~~~~~g~~~~Ai~~~~~al~ 97 (640)
+++|.+|+.+|+++.|...++.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5678888888888888888888885
No 385
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=84.46 E-value=68 Score=35.12 Aligned_cols=245 Identities=8% Similarity=-0.026 Sum_probs=152.2
Q ss_pred cCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---HccCHHHHHHHHHHHHHhCCCcHHHH
Q 006562 376 SKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARA---FQRELEAAISDFTEAIQSNPSAGEAW 452 (640)
Q Consensus 376 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~ 452 (640)
.++.+...+..+-.+++..|++++-...-.++.++.|..+..|..-..-.. ..++-.++...|++++.-. .+...|
T Consensus 108 i~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy-~~v~iw 186 (881)
T KOG0128|consen 108 INSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDY-NSVPIW 186 (881)
T ss_pred ccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhccc-ccchHH
Confidence 455556677777888899999988888878888888888888766554333 2367778888899988543 344444
Q ss_pred HHHHHHH-------HHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcH-
Q 006562 453 KRRGQAR-------AALGESVEAIQDLSKALEFEPNS-------ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK- 517 (640)
Q Consensus 453 ~~la~~~-------~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~- 517 (640)
...+... ...++++.-...|.+++..-... ...+..+...|...-..++-+.++...+... -+.
T Consensus 187 ~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~-~D~~ 265 (881)
T KOG0128|consen 187 EEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP-LDED 265 (881)
T ss_pred HHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc-chhh
Confidence 4444333 44567777888888887653322 3345555555555555566677777666553 221
Q ss_pred ---HHHHHHH---HHHHHcCCHHHHHHH-------HHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Q 006562 518 ---SAYTYLG---LALSSIGEYKKAEEA-------HLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF 584 (640)
Q Consensus 518 ---~~~~~la---~~~~~~g~~~~A~~~-------~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 584 (640)
..|.... .......+++.|..- +++.++..|.....|..+.......|+.-.-...+++++...+.+
T Consensus 266 ~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~ 345 (881)
T KOG0128|consen 266 TRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLD 345 (881)
T ss_pred hhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhcccc
Confidence 1111111 112223445555444 334444455555667777777788898888888889998887777
Q ss_pred hHHHHHHHHHHH-hcCCHHHHHHHHHHhhccCCCCHHHH
Q 006562 585 SKAYHLRGLLLH-GLGQHKKAIKDLSSGLGIDPSNIECL 622 (640)
Q Consensus 585 ~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~ 622 (640)
...|...+...- .++-.+.+...+-+++...|-..++|
T Consensus 346 ~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~ 384 (881)
T KOG0128|consen 346 RALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLW 384 (881)
T ss_pred HHHHhhhhhhcccccccccccccccchhhcCCchHHHHH
Confidence 777777765542 34444555555666666666544443
No 386
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.44 E-value=26 Score=38.17 Aligned_cols=203 Identities=16% Similarity=0.054 Sum_probs=106.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Q 006562 388 GIAQVNEGKYASAISIFDQILKEDPM-YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESV 466 (640)
Q Consensus 388 a~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 466 (640)
-..+.+..-|+-|+.+.+.- ..+++ -..++...|..++..|++++|...|-+.+..-.. +.+. .-+.......
T Consensus 341 L~iL~kK~ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~-s~Vi----~kfLdaq~Ik 414 (933)
T KOG2114|consen 341 LDILFKKNLYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP-SEVI----KKFLDAQRIK 414 (933)
T ss_pred HHHHHHhhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh-HHHH----HHhcCHHHHH
Confidence 34566667777777765542 12222 2456667778888888888888888887754221 1111 1123333444
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHH---HHHHHHHHHcCCHHHHHHHHHHH
Q 006562 467 EAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAY---TYLGLALSSIGEYKKAEEAHLKA 543 (640)
Q Consensus 467 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~---~~la~~~~~~g~~~~A~~~~~~a 543 (640)
+-..+++.+.+..-.+.+-...+-.+|.++++.++-.++.++. + ..... -..-.++...+-+++|.....+.
T Consensus 415 nLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~----~-~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~ 489 (933)
T KOG2114|consen 415 NLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKC----D-KGEWFFDVETALEILRKSNYLDEAELLATKF 489 (933)
T ss_pred HHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcC----C-CcceeeeHHHHHHHHHHhChHHHHHHHHHHh
Confidence 4455666666555445555556777888888877655555442 2 11111 11122333333344444333332
Q ss_pred HccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 006562 544 IQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF-SKAYHLRGLLLHGLGQHKKAIKDLSSGL 612 (640)
Q Consensus 544 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al 612 (640)
-. +. ..+-.++...|+|++|+.++... .|+. .......|..+... .+++-...+-+..
T Consensus 490 ~~----he---~vl~ille~~~ny~eAl~yi~sl---p~~e~l~~l~kyGk~Ll~h-~P~~t~~ili~~~ 548 (933)
T KOG2114|consen 490 KK----HE---WVLDILLEDLHNYEEALRYISSL---PISELLRTLNKYGKILLEH-DPEETMKILIELI 548 (933)
T ss_pred cc----CH---HHHHHHHHHhcCHHHHHHHHhcC---CHHHHHHHHHHHHHHHHhh-ChHHHHHHHHHHH
Confidence 11 11 22334566788899999888754 2221 23445566666553 3444444444433
No 387
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=83.64 E-value=74 Score=34.88 Aligned_cols=233 Identities=10% Similarity=-0.042 Sum_probs=153.9
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH---HcCCHHHHHHH
Q 006562 395 GKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA---ALGESVEAIQD 471 (640)
Q Consensus 395 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---~~~~~~~A~~~ 471 (640)
+.-+.-+..++.-+..++.+...+..+-.+++..|++++-...-..+.++.|..+..|.....-.. ..+.-.++...
T Consensus 93 ~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~ 172 (881)
T KOG0128|consen 93 GGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEEL 172 (881)
T ss_pred ccchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHH
Confidence 334445566666677788888888899999999999999888888888888988888876654333 23667788888
Q ss_pred HHHHHHhCCCCHHHHHHHHHHH-------HhcCCHHHHHHHHHHHHHhCCC-------cHHHHHHHHHHHHHcCCHHHHH
Q 006562 472 LSKALEFEPNSADILHERGIVN-------FKFKDFNAAVEDLSACVKLDKE-------NKSAYTYLGLALSSIGEYKKAE 537 (640)
Q Consensus 472 ~~~al~~~p~~~~~~~~la~~~-------~~~~~~~~A~~~~~~al~~~~~-------~~~~~~~la~~~~~~g~~~~A~ 537 (640)
|++++...- .+.+|...+... ...++++.....+.+++..-.. ....+..+..+|...-..++-+
T Consensus 173 ~ekal~dy~-~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~ 251 (881)
T KOG0128|consen 173 FEKALGDYN-SVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVI 251 (881)
T ss_pred HHHHhcccc-cchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 998886542 344454444443 4456778888888888765321 2355555666666666667777
Q ss_pred HHHHHHHccCcccH----HHHHHHH--HH-HHHhcCHHHHHHH-------HHHHHHhCCCChHHHHHHHHHHHhcCCHHH
Q 006562 538 EAHLKAIQLDRNFL----EAWGHLT--QF-YQDLANSEKALEC-------LQQVLYIDKRFSKAYHLRGLLLHGLGQHKK 603 (640)
Q Consensus 538 ~~~~~a~~~~~~~~----~~~~~la--~~-~~~~g~~~~A~~~-------~~~al~~~~~~~~~~~~la~~~~~~g~~~~ 603 (640)
.++...+... -+. ..|.... .+ .....+++.|..- +++.+...|.....|..+-......|.+-.
T Consensus 252 a~~~~el~~~-~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~r 330 (881)
T KOG0128|consen 252 ALFVRELKQP-LDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVR 330 (881)
T ss_pred HHHHHHHhcc-chhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchH
Confidence 8877777653 221 1111111 11 1223445555444 444444555555667777777888999988
Q ss_pred HHHHHHHhhccCCCCHHHHHHHHHHH
Q 006562 604 AIKDLSSGLGIDPSNIECLYLRASCY 629 (640)
Q Consensus 604 A~~~~~~al~~~p~~~~~~~~la~~~ 629 (640)
-...+++++.-.+.+.+.|...+...
T Consensus 331 i~l~~eR~~~E~~~~~~~wi~y~~~~ 356 (881)
T KOG0128|consen 331 IQLIEERAVAEMVLDRALWIGYGVYL 356 (881)
T ss_pred HHHHHHHHHHhccccHHHHhhhhhhc
Confidence 88899999888888788887766543
No 388
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=83.18 E-value=46 Score=32.23 Aligned_cols=165 Identities=16% Similarity=0.133 Sum_probs=108.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHh----CC--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CCc--HHH
Q 006562 385 LSRGIAQVNEGKYASAISIFDQILKE----DP--MYPEALIGRGTARAFQRELEAAISDFTEAIQSN-----PSA--GEA 451 (640)
Q Consensus 385 ~~~a~~~~~~g~~~~A~~~~~~~l~~----~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~--~~~ 451 (640)
..+...|+..++|.+|+......++. +. .-.+++..-..+|+...+..+|...+..+-... |.. +..
T Consensus 132 arli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~l 211 (411)
T KOG1463|consen 132 ARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATL 211 (411)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHH
Confidence 35678899999999999988777642 22 234667777888899999888888877665432 211 122
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHH---HHHHHHHHHHhcCCHHHHHH--HHHHHHHhCCCcHHHHHHH
Q 006562 452 WKRRGQARAALGESVEAIQDLSKALEFEPN---SAD---ILHERGIVNFKFKDFNAAVE--DLSACVKLDKENKSAYTYL 523 (640)
Q Consensus 452 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~---~~~~la~~~~~~~~~~~A~~--~~~~al~~~~~~~~~~~~l 523 (640)
-..-|.++..-.+|..|..+|-.+++-... +.. ++..+-.+-...+..++--. .-..+++....+..+....
T Consensus 212 DLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~Amkav 291 (411)
T KOG1463|consen 212 DLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAV 291 (411)
T ss_pred HHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHH
Confidence 233456666668999999999998875421 222 23333334444555554433 3445666666777888888
Q ss_pred HHHHHH--cCCHHHHHHHHHHHHccCcc
Q 006562 524 GLALSS--IGEYKKAEEAHLKAIQLDRN 549 (640)
Q Consensus 524 a~~~~~--~g~~~~A~~~~~~a~~~~~~ 549 (640)
+.++.. +.+|..|+.-|..-+..+|-
T Consensus 292 AeA~~nRSLkdF~~AL~~yk~eL~~D~i 319 (411)
T KOG1463|consen 292 AEAFGNRSLKDFEKALADYKKELAEDPI 319 (411)
T ss_pred HHHhcCCcHHHHHHHHHHhHHHHhcChH
Confidence 877765 46788888888877766553
No 389
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=82.89 E-value=5.9 Score=38.05 Aligned_cols=62 Identities=16% Similarity=0.044 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 006562 468 AIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS 529 (640)
Q Consensus 468 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 529 (640)
|..+|.+|..+.|.....+..+|.++...|+.-.|+-+|-+++-.....+.+..++...+..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 34555555555555555555555555555555555555555554332234444444444443
No 390
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=82.85 E-value=36 Score=31.72 Aligned_cols=28 Identities=14% Similarity=0.177 Sum_probs=14.3
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 006562 419 IGRGTARAFQRELEAAISDFTEAIQSNP 446 (640)
Q Consensus 419 ~~la~~~~~~g~~~~A~~~~~~al~~~p 446 (640)
..+|.+..+.|+|++.+.++.+++..+|
T Consensus 5 i~~Aklaeq~eRy~dmv~~mk~~~~~~~ 32 (236)
T PF00244_consen 5 IYLAKLAEQAERYDDMVEYMKQLIEMNP 32 (236)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHccCC
Confidence 3445555555555555555555555444
No 391
>PF13041 PPR_2: PPR repeat family
Probab=82.60 E-value=4.5 Score=26.68 Aligned_cols=33 Identities=6% Similarity=0.220 Sum_probs=22.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHccc--CchhHHHh
Q 006562 42 ELAKLCSLRNWSKAIRILDSLLAQS--YEIQDICN 74 (640)
Q Consensus 42 ~~~~~~~~~~y~~Ai~~y~~ai~~~--~~~~~~~~ 74 (640)
-+.-+++.|++++|...|++..+.+ |+...|..
T Consensus 9 li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~ 43 (50)
T PF13041_consen 9 LISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNI 43 (50)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 3455677777777777777777666 66555543
No 392
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=81.95 E-value=6.9 Score=37.60 Aligned_cols=62 Identities=19% Similarity=0.091 Sum_probs=48.6
Q ss_pred HHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh
Q 006562 536 AEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG 597 (640)
Q Consensus 536 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 597 (640)
|..+|.+|+.+.|.+...|+.+|.++...|+.=.|+-+|-+++-.....+.+..++..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67888888888898888899999888888888888888888886655567778888877776
No 393
>PRK11619 lytic murein transglycosylase; Provisional
Probab=81.81 E-value=86 Score=34.34 Aligned_cols=178 Identities=8% Similarity=-0.096 Sum_probs=94.6
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Q 006562 459 RAALGESVEAIQDLSKALEFEPNSA----DILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYK 534 (640)
Q Consensus 459 ~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~ 534 (640)
.....+.+.|...+.+.....+-+. .++..+|.-....+...+|..++..+.... .+....-....+....++++
T Consensus 251 Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~-~~~~~~e~r~r~Al~~~dw~ 329 (644)
T PRK11619 251 SVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS-QSTSLLERRVRMALGTGDRR 329 (644)
T ss_pred HHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc-CCcHHHHHHHHHHHHccCHH
Confidence 3445566777777766544333221 123333333333322455555555543322 12233333344444666776
Q ss_pred HHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------------------CCC--h------HH
Q 006562 535 KAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYID-------------------KRF--S------KA 587 (640)
Q Consensus 535 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------------------~~~--~------~~ 587 (640)
.+...+...-..........+.+|+.+...|+.++|..+|+++.... +.. . ..
T Consensus 330 ~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~ 409 (644)
T PRK11619 330 GLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQRGFYPMVAAQRLGEEYPLKIDKAPKPDSALTQGP 409 (644)
T ss_pred HHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCcHHHHHHHHcCCCCCCCCCCCCchhhhhccCh
Confidence 66666655433333445666677777666777777777776653210 000 0 12
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCCccccc
Q 006562 588 YHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAV 639 (640)
Q Consensus 588 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Al 639 (640)
....+..+...|....|...+..++.. .+..-...++.+....|.++.|+
T Consensus 410 ~~~ra~~L~~~g~~~~a~~ew~~~~~~--~~~~~~~~la~~A~~~g~~~~ai 459 (644)
T PRK11619 410 EMARVRELMYWNMDNTARSEWANLVAS--RSKTEQAQLARYAFNQQWWDLSV 459 (644)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCHHHHH
Confidence 234566677778888888888777664 23455566667666777665543
No 394
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=81.50 E-value=7.4 Score=36.54 Aligned_cols=58 Identities=21% Similarity=0.155 Sum_probs=35.1
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006562 418 LIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKA 475 (640)
Q Consensus 418 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 475 (640)
+...+..|...|.+.+|+.+.++++..+|-+...+..+-.++..+|+--.++..|++.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 3344555566666666666666666666666666666666666666655555555544
No 395
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=81.23 E-value=58 Score=33.47 Aligned_cols=29 Identities=14% Similarity=0.058 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 006562 417 ALIGRGTARAFQRELEAAISDFTEAIQSN 445 (640)
Q Consensus 417 ~~~~la~~~~~~g~~~~A~~~~~~al~~~ 445 (640)
....+|..++..|+|+.|...|+-+.+-.
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df 238 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDF 238 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 34557777777777777777777766543
No 396
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=81.09 E-value=54 Score=31.55 Aligned_cols=124 Identities=13% Similarity=0.079 Sum_probs=66.5
Q ss_pred hhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cH
Q 006562 371 TRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS-AG 449 (640)
Q Consensus 371 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~ 449 (640)
......+|.-+.++..+|.-- ..-..+|..+|+++++.. +..+.........|...+|. .+.+.+ ..
T Consensus 208 ~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~----e~~yr~sqq~qh~~~~~da~------~rRDtnvl~ 275 (556)
T KOG3807|consen 208 YQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAG----ETIYRQSQQCQHQSPQHEAQ------LRRDTNVLV 275 (556)
T ss_pred HHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHH----HHHHhhHHHHhhhccchhhh------hhcccchhh
Confidence 344556666666776666442 234667888888887642 22222222222222222221 111111 12
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhcCCHHHHHHHH
Q 006562 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNS--ADILHERGIVNFKFKDFNAAVEDL 506 (640)
Q Consensus 450 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~ 506 (640)
.+-..++.|..++|+..+|++.++...+..|-. ..++-++...+....-|.+....+
T Consensus 276 YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavL 334 (556)
T KOG3807|consen 276 YIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVL 334 (556)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234568888888999999999998888877732 123444445555544444443333
No 397
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.69 E-value=8.9 Score=37.80 Aligned_cols=88 Identities=14% Similarity=0.011 Sum_probs=67.2
Q ss_pred HHHHHH-hcCCHHHHHHHHHHHHcccCch----hHHHhHHHHHHhhhcHHHHHHHHHHHHHcC-------C-CchHHHHH
Q 006562 42 ELAKLC-SLRNWSKAIRILDSLLAQSYEI----QDICNRAFCYSQLELHKHVIRDCDKALQLD-------P-TLLQAYIL 108 (640)
Q Consensus 42 ~~~~~~-~~~~y~~Ai~~y~~ai~~~~~~----~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~-------P-~~~~a~~~ 108 (640)
.++.+| ..|+++.|+.+|.++-.-..+. ..+.|.-.+-+-+|+|.+......+|..-- + -.++....
T Consensus 155 Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl~C~ 234 (466)
T KOG0686|consen 155 DLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKLKCA 234 (466)
T ss_pred HHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcchHHH
Confidence 344444 6999999999999976655222 225677778888999999999988887751 0 12447778
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 006562 109 KGCAFSALGRKEEALSVWEKG 129 (640)
Q Consensus 109 ~g~~y~~~g~~~~A~~~~~~a 129 (640)
.|.+.+.+++|..|.+.|-.+
T Consensus 235 agLa~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 235 AGLANLLLKKYKSAAKYFLLA 255 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHhC
Confidence 899999999999999999888
No 398
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=80.09 E-value=3.4 Score=37.79 Aligned_cols=92 Identities=14% Similarity=0.138 Sum_probs=58.5
Q ss_pred HHHhcCCHHHHHHHHHHHHccc-CchhH------------HHhHHHHHHhhhcH-HHHH-HHHHHHHH-cC-CCchHH--
Q 006562 45 KLCSLRNWSKAIRILDSLLAQS-YEIQD------------ICNRAFCYSQLELH-KHVI-RDCDKALQ-LD-PTLLQA-- 105 (640)
Q Consensus 45 ~~~~~~~y~~Ai~~y~~ai~~~-~~~~~------------~~~~A~~~~~~g~~-~~Ai-~~~~~al~-~~-P~~~~a-- 105 (640)
+.|--|+|+.|++...-||+.+ +.|.- .+.-|......|+- +-.+ ..+..... .| |+-+.+
T Consensus 92 W~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl 171 (230)
T PHA02537 92 WRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKL 171 (230)
T ss_pred eeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHH
Confidence 5688899999999999999998 44433 23455555555542 1222 12222221 11 555554
Q ss_pred HHHHHHHHH---------HcCCHHHHHHHHHHHHhhccCC
Q 006562 106 YILKGCAFS---------ALGRKEEALSVWEKGYEHALHQ 136 (640)
Q Consensus 106 ~~~~g~~y~---------~~g~~~~A~~~~~~al~~~~~~ 136 (640)
|-..|..++ ..++...|...+++|+.++|..
T Consensus 172 ~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 172 YKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred HHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence 445555553 4568889999999999888764
No 399
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=79.74 E-value=73 Score=32.26 Aligned_cols=59 Identities=22% Similarity=0.266 Sum_probs=38.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhC---------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 006562 486 LHERGIVNFKFKDFNAAVEDLSACVKLD---------KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ 545 (640)
Q Consensus 486 ~~~la~~~~~~~~~~~A~~~~~~al~~~---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 545 (640)
...+.+++.-+|+|..|++.++.. .++ +-....++..|.+|..+++|.+|++.|...+-
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556667777777777766542 111 22345677788888888888888888877654
No 400
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=79.31 E-value=56 Score=30.70 Aligned_cols=59 Identities=15% Similarity=0.049 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006562 552 EAWGHLTQFYQDLANSEKALECLQQVLYIDKRF------SKAYHLRGLLLHGLGQHKKAIKDLSS 610 (640)
Q Consensus 552 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~ 610 (640)
.....+|.-|+..|++++|+.+|+.+....... ..+...+..|+...|+.+..+...-+
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 344566777777777777777777765443221 23555666777777777766655443
No 401
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=78.57 E-value=61 Score=32.78 Aligned_cols=61 Identities=21% Similarity=0.127 Sum_probs=41.6
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHH--HHHHH--HHHHHHcCCHHHHHHHHHHHHHh
Q 006562 418 LIGRGTARAFQRELEAAISDFTEAIQSNPSAGE--AWKRR--GQARAALGESVEAIQDLSKALEF 478 (640)
Q Consensus 418 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~~l--a~~~~~~~~~~~A~~~~~~al~~ 478 (640)
....+...+..++|..|...+..+...-|.... .+..+ |..++..-++.+|.+.++..+..
T Consensus 134 ~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 134 EWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 345667778888999999988888875333332 33333 34445667888888888887765
No 402
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.57 E-value=38 Score=37.03 Aligned_cols=176 Identities=9% Similarity=0.041 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 006562 381 VDFRLSRGIAQVNEGKYASAISIFDQILKE-DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR 459 (640)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 459 (640)
...+...|..++..|++++|...|-+.+.. +|.. +. .-+.......+-..+++...+..-.+.+--..|-.+|
T Consensus 368 ~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~--Vi----~kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncY 441 (933)
T KOG2114|consen 368 AEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSE--VI----KKFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCY 441 (933)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHH--HH----HHhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHH
Confidence 346677899999999999999999998864 3321 11 1123334444555666666665555555556778899
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH
Q 006562 460 AALGESVEAIQDLSKALEFEPNSADIL---HERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKA 536 (640)
Q Consensus 460 ~~~~~~~~A~~~~~~al~~~p~~~~~~---~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A 536 (640)
.++++.++-.+..+ ..+ ..... -..-.++.+.+-.++|.....+.- .+. ..+-.++...++|++|
T Consensus 442 iKlkd~~kL~efI~----~~~-~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~----~he---~vl~ille~~~ny~eA 509 (933)
T KOG2114|consen 442 IKLKDVEKLTEFIS----KCD-KGEWFFDVETALEILRKSNYLDEAELLATKFK----KHE---WVLDILLEDLHNYEEA 509 (933)
T ss_pred HHhcchHHHHHHHh----cCC-CcceeeeHHHHHHHHHHhChHHHHHHHHHHhc----cCH---HHHHHHHHHhcCHHHH
Confidence 99999776544443 333 11111 111233344444455544433321 112 2244566778999999
Q ss_pred HHHHHHHHccCccc-HHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 006562 537 EEAHLKAIQLDRNF-LEAWGHLTQFYQDLANSEKALECLQQVL 578 (640)
Q Consensus 537 ~~~~~~a~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al 578 (640)
++++... .|.. .......|..+... .+++-...+-+.+
T Consensus 510 l~yi~sl---p~~e~l~~l~kyGk~Ll~h-~P~~t~~ili~~~ 548 (933)
T KOG2114|consen 510 LRYISSL---PISELLRTLNKYGKILLEH-DPEETMKILIELI 548 (933)
T ss_pred HHHHhcC---CHHHHHHHHHHHHHHHHhh-ChHHHHHHHHHHH
Confidence 9998753 2222 44556677777654 4455555544444
No 403
>PF12854 PPR_1: PPR repeat
Probab=77.94 E-value=6.4 Score=23.48 Aligned_cols=27 Identities=19% Similarity=0.306 Sum_probs=20.4
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006562 102 LLQAYILKGCAFSALGRKEEALSVWEK 128 (640)
Q Consensus 102 ~~~a~~~~g~~y~~~g~~~~A~~~~~~ 128 (640)
+.-.|..+-..|++.|+.++|.+.|++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 355777778888888888888877764
No 404
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=77.89 E-value=10 Score=31.78 Aligned_cols=50 Identities=26% Similarity=0.244 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC
Q 006562 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRE 430 (640)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~ 430 (640)
.+..+..+...+..|++.-|..+.+.++..+|++..+...++.++..+|.
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 45566778888888999999999999998999988888888888877764
No 405
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=77.52 E-value=3.2 Score=40.01 Aligned_cols=127 Identities=16% Similarity=0.106 Sum_probs=84.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcC
Q 006562 487 HERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN 566 (640)
Q Consensus 487 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~ 566 (640)
...+.-.++.+++..|..-+.+++..-...+ . .+..+... +.....+.-...+.+++.+-...+.
T Consensus 226 k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s-----------~-~~~~e~~~---~~~~~~~~r~~~~~n~~~~~lk~~~ 290 (372)
T KOG0546|consen 226 KNIGNKEFKKQRYREALAKYRKALRYLSEQS-----------R-DREKEQEN---RIPPLRELRFSIRRNLAAVGLKVKG 290 (372)
T ss_pred hccchhhhhhccHhHHHHHHHHHhhhhcccc-----------c-cccccccc---ccccccccccccccchHHhcccccC
Confidence 3457778889999999999988876422100 0 00001100 0111111223344457777778888
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHH
Q 006562 567 SEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASC 628 (640)
Q Consensus 567 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 628 (640)
+..|+.....++..+++...+++..+..+....++++|++.++.+....|++..+...+..+
T Consensus 291 ~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~ 352 (372)
T KOG0546|consen 291 RGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENV 352 (372)
T ss_pred CCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHh
Confidence 88888877777777777888888888888888888888888888888888887665554444
No 406
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=77.49 E-value=25 Score=28.90 Aligned_cols=79 Identities=11% Similarity=0.045 Sum_probs=48.5
Q ss_pred hcCCHHHHHHHHHHHHcccCchhHHHhHHHHHHhhhcHHHHHHHHHH-HHHcCCCchHHHHHHHHHHHHcCCHHHHHHHH
Q 006562 48 SLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDK-ALQLDPTLLQAYILKGCAFSALGRKEEALSVW 126 (640)
Q Consensus 48 ~~~~y~~Ai~~y~~ai~~~~~~~~~~~~A~~~~~~g~~~~Ai~~~~~-al~~~P~~~~a~~~~g~~y~~~g~~~~A~~~~ 126 (640)
.-|+..+-+.||-+.-.. ..|...|.-++-...-...+...-+ ..+-+..+++..+.+|.+|.++|+..+|-..+
T Consensus 68 ~C~NlKrVi~C~~~~n~~----se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell 143 (161)
T PF09205_consen 68 KCGNLKRVIECYAKRNKL----SEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELL 143 (161)
T ss_dssp G-S-THHHHHHHHHTT-------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred hhcchHHHHHHHHHhcch----HHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHH
Confidence 447888888887654322 2267788765554444444444433 33344557889999999999999999999999
Q ss_pred HHHH
Q 006562 127 EKGY 130 (640)
Q Consensus 127 ~~al 130 (640)
.+|=
T Consensus 144 ~~AC 147 (161)
T PF09205_consen 144 KEAC 147 (161)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9883
No 407
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=77.48 E-value=91 Score=32.06 Aligned_cols=32 Identities=16% Similarity=-0.011 Sum_probs=25.3
Q ss_pred cHHH-HHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 006562 380 SVDF-RLSRGIAQVNEGKYASAISIFDQILKED 411 (640)
Q Consensus 380 ~~~~-~~~~a~~~~~~g~~~~A~~~~~~~l~~~ 411 (640)
.++. .-.+|..++..|+|+.|...|+.+.+-.
T Consensus 206 S~E~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df 238 (414)
T PF12739_consen 206 SPEAQMRRLADLAFMLRDYELAYSTYRLLKKDF 238 (414)
T ss_pred ChHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 3443 4568999999999999999999887643
No 408
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=77.11 E-value=5.7 Score=22.86 Aligned_cols=27 Identities=22% Similarity=0.134 Sum_probs=13.4
Q ss_pred CHHHHHHHHHHhhccCCCCHHHHHHHH
Q 006562 600 QHKKAIKDLSSGLGIDPSNIECLYLRA 626 (640)
Q Consensus 600 ~~~~A~~~~~~al~~~p~~~~~~~~la 626 (640)
+.+.|...|++++...|.++.+|...+
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 344455555555555555555444443
No 409
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=76.77 E-value=26 Score=32.98 Aligned_cols=25 Identities=12% Similarity=0.020 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Q 006562 105 AYILKGCAFSALGRKEEALSVWEKG 129 (640)
Q Consensus 105 a~~~~g~~y~~~g~~~~A~~~~~~a 129 (640)
..+++..+|+..|+..+|++-|++=
T Consensus 12 i~~ki~rl~l~~~~~~~Av~q~~~H 36 (247)
T PF11817_consen 12 IAFKICRLYLWLNQPTEAVRQFRAH 36 (247)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 4566777888888888888777665
No 410
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=76.68 E-value=7.2 Score=22.41 Aligned_cols=27 Identities=11% Similarity=0.028 Sum_probs=13.9
Q ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHH
Q 006562 566 NSEKALECLQQVLYIDKRFSKAYHLRG 592 (640)
Q Consensus 566 ~~~~A~~~~~~al~~~~~~~~~~~~la 592 (640)
+.+.+...|++++...|.++..|...+
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 344555555555555555555554443
No 411
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=75.89 E-value=80 Score=30.65 Aligned_cols=186 Identities=12% Similarity=-0.002 Sum_probs=113.9
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006562 397 YASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS-AGEAWKRRGQARAALGESVEAIQDLSKA 475 (640)
Q Consensus 397 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~a 475 (640)
-++|+.+-.-+..+-|..|+++-.++...++..+... ..+++ .+..+...-...+..+-.+++...+.++
T Consensus 212 c~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~A---------R~~~~G~~vlL~dQDr~lW~r~lI~eg~all~rA 282 (415)
T COG4941 212 CDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPA---------RFDADGEPVLLEDQDRSLWDRALIDEGLALLDRA 282 (415)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhh---------ccCCCCCeeeccccchhhhhHHHHHHHHHHHHHH
Confidence 4688888888888999999998888877765432211 11111 0111111112233344566777778887
Q ss_pred HHhCC-CCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc--C
Q 006562 476 LEFEP-NSADILHERGIVNFK-----FKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL--D 547 (640)
Q Consensus 476 l~~~p-~~~~~~~~la~~~~~-----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~ 547 (640)
+.... ......-.++-++.. .-+|..-..+|.-.....|+ +.+-.+.+....+..-...++...+..... -
T Consensus 283 ~~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L 361 (415)
T COG4941 283 LASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPS-PVVTLNRAVALAMREGPAAGLAMVEALLARPRL 361 (415)
T ss_pred HHcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhhHHhHHHHHHHhhccccc
Confidence 76543 222233333333332 23676666677766666664 455556666666666666777776665544 2
Q ss_pred cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 006562 548 RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRG 592 (640)
Q Consensus 548 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la 592 (640)
..+...+...|.++.+.|+.++|...|++++.+.++..+..+...
T Consensus 362 ~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~ 406 (415)
T COG4941 362 DGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQ 406 (415)
T ss_pred ccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 334456667888999999999999999999999887766555443
No 412
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=75.61 E-value=6.6 Score=25.19 Aligned_cols=25 Identities=16% Similarity=0.363 Sum_probs=15.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHH
Q 006562 385 LSRGIAQVNEGKYASAISIFDQILK 409 (640)
Q Consensus 385 ~~~a~~~~~~g~~~~A~~~~~~~l~ 409 (640)
+.+|..|+..|+++.|...+++++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3456666666666666666666663
No 413
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=75.34 E-value=47 Score=27.74 Aligned_cols=27 Identities=22% Similarity=0.116 Sum_probs=17.0
Q ss_pred CCHHHHHHHHHHhhccCCCCHHHHHHHHHHHH
Q 006562 599 GQHKKAIKDLSSGLGIDPSNIECLYLRASCYH 630 (640)
Q Consensus 599 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 630 (640)
++++.|++++.+ +++++.|..++..+.
T Consensus 110 ~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 110 GNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred cCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 666777776665 335667776666554
No 414
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=74.79 E-value=32 Score=36.96 Aligned_cols=124 Identities=14% Similarity=0.080 Sum_probs=68.9
Q ss_pred hhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHH---HccCHHHHHHHHHHHH
Q 006562 372 RISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY------PEALIGRGTARA---FQRELEAAISDFTEAI 442 (640)
Q Consensus 372 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~------~~~~~~la~~~~---~~g~~~~A~~~~~~al 442 (640)
++...+-..++....+-..|....+|+.-+++.+..-. -|+. ..+.+..+-++- .-|+-++|+...-.++
T Consensus 192 RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~-iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lv 270 (1226)
T KOG4279|consen 192 RLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKR-IPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLV 270 (1226)
T ss_pred hcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHh-CcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHH
Confidence 33444555666777777777777777777776665443 2321 111111222221 2367777777777776
Q ss_pred HhC-CCcHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 006562 443 QSN-PSAGEAWKRRGQARAA---------LGESVEAIQDLSKALEFEPNSADILHERGIVNFKFK 497 (640)
Q Consensus 443 ~~~-p~~~~~~~~la~~~~~---------~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 497 (640)
+.. |-.++.+...|++|-. .+..+.|+.+|+++.+..|.. ..-.+++.++...|
T Consensus 271 e~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~-~sGIN~atLL~aaG 334 (1226)
T KOG4279|consen 271 EKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLE-YSGINLATLLRAAG 334 (1226)
T ss_pred HhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchh-hccccHHHHHHHhh
Confidence 654 3345566666666643 245567778888888777743 22233444444444
No 415
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=73.72 E-value=78 Score=29.50 Aligned_cols=62 Identities=11% Similarity=0.035 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHH-HccCHHHHHHHHHHHHHh
Q 006562 383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMY-PEALIGRGTARA-FQRELEAAISDFTEAIQS 444 (640)
Q Consensus 383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~-~~~~~~la~~~~-~~g~~~~A~~~~~~al~~ 444 (640)
-+..+|....+.|+|++.+.++.+++..+|.- .+-...++.+|- ..|....+...+......
T Consensus 3 ~li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~ 66 (236)
T PF00244_consen 3 ELIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQK 66 (236)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhh
Confidence 35678899999999999999999999997763 444555555553 235555555555554443
No 416
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=73.45 E-value=38 Score=30.60 Aligned_cols=59 Identities=12% Similarity=-0.005 Sum_probs=32.9
Q ss_pred HHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCh
Q 006562 79 YSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQS 137 (640)
Q Consensus 79 ~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~~~~A~~~~~~al~~~~~~~ 137 (640)
+++-++..+||...+.-++..|.+......+-+.|+-.|+|+.|..-++-+-.+.|+.+
T Consensus 11 LL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 11 LLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 44445555555555555555555555555555555555555555555555555555443
No 417
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=73.31 E-value=64 Score=28.29 Aligned_cols=187 Identities=16% Similarity=0.114 Sum_probs=113.4
Q ss_pred CcccHHHHHHHHHHHHH-cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----ccCHHHHHHHHHHHHHhCCCcHH
Q 006562 377 KSISVDFRLSRGIAQVN-EGKYASAISIFDQILKEDPMYPEALIGRGTARAF-----QRELEAAISDFTEAIQSNPSAGE 450 (640)
Q Consensus 377 ~~~~~~~~~~~a~~~~~-~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~-----~g~~~~A~~~~~~al~~~p~~~~ 450 (640)
....|+....+|..+-. +.+|++|..+|..--..+. .+...+.+|..++. .++...|++.+..+-. .+.+.
T Consensus 30 ~EK~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden~-y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~ 106 (248)
T KOG4014|consen 30 EEKRPESCQLLGDYLEGIQKNFQAAVKVFKKNCDENS-YPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQ 106 (248)
T ss_pred ccCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccC-CcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHH
Confidence 34556777777765543 4678888888776544332 35666666665542 3578889999988876 45677
Q ss_pred HHHHHHHHHHHc-----C--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 006562 451 AWKRRGQARAAL-----G--ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYL 523 (640)
Q Consensus 451 ~~~~la~~~~~~-----~--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l 523 (640)
+...+|.++..- + +..+|.+++.++-.+. +..+.+.+...++.-. ++ +....|..... ...
T Consensus 107 aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g~--~k-------~~t~ap~~g~p-~~~ 174 (248)
T KOG4014|consen 107 ACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE--DGEACFLLSTMYMGGK--EK-------FKTNAPGEGKP-LDR 174 (248)
T ss_pred HHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHHhccc--hh-------hcccCCCCCCC-cch
Confidence 777777777643 2 3678888888887765 4455555655554322 11 11123311100 112
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHh----cCHHHHHHHHHHHHHh
Q 006562 524 GLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL----ANSEKALECLQQVLYI 580 (640)
Q Consensus 524 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~ 580 (640)
+..+.-..+.+.|.++--++.++. .+.+..++.+.|..- .+-++|..+-.++.++
T Consensus 175 ~~~~~~~kDMdka~qfa~kACel~--~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~ 233 (248)
T KOG4014|consen 175 AELGSLSKDMDKALQFAIKACELD--IPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEI 233 (248)
T ss_pred hhhhhhhHhHHHHHHHHHHHHhcC--ChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence 344445567888888888887764 456666666666432 3567777777777654
No 418
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.50 E-value=1.7e+02 Score=32.97 Aligned_cols=65 Identities=15% Similarity=0.173 Sum_probs=43.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHcccCchhH------HHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchH
Q 006562 39 ARIELAKLCSLRNWSKAIRILDSLLAQSYEIQD------ICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104 (640)
Q Consensus 39 ~~~~~~~~~~~~~y~~Ai~~y~~ai~~~~~~~~------~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~ 104 (640)
-+...-.+++.+.|+.|+..-+-....+|.... +...|.-++.+|+|++|+..+.+ ++.||..+.
T Consensus 310 ~~~qi~~lL~~k~fe~ai~L~e~~~~~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~-~~~d~~~vi 380 (877)
T KOG2063|consen 310 FEKQIQDLLQEKSFEEAISLAEILDSPNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEK-SEIDPRHVI 380 (877)
T ss_pred hHHHHHHHHHhhhHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh-hccChHHHH
Confidence 344556778888999998876665543322222 12336668899999999999988 556774444
No 419
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=72.17 E-value=73 Score=30.03 Aligned_cols=126 Identities=17% Similarity=0.234 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--------ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc--CCHHH
Q 006562 398 ASAISIFDQILKEDPMYPEALIGRGTARAF--------QRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL--GESVE 467 (640)
Q Consensus 398 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--~~~~~ 467 (640)
..|++.-...+..+|....+|...-.+... ..-.+.-+..+..+++.+|.+-.+|...-.++... ..+..
T Consensus 49 ~~aLklt~elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~r 128 (328)
T COG5536 49 VRALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGR 128 (328)
T ss_pred HHHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccch
Confidence 355666566666666555555444333332 01123334445555555555555555444443332 33444
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHH------HhcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 006562 468 AIQDLSKALEFEPNSADILHERGIVN------FKFKDFNAAVEDLSACVKLDKENKSAYTYL 523 (640)
Q Consensus 468 A~~~~~~al~~~p~~~~~~~~la~~~------~~~~~~~~A~~~~~~al~~~~~~~~~~~~l 523 (640)
-....++.+..++.+-.+|...-.+. ....++..-.++-..++..++.+..+|...
T Consensus 129 El~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r 190 (328)
T COG5536 129 ELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYNNSAWHHR 190 (328)
T ss_pred hHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHHHhHHHHHhhCCCChHHHHHH
Confidence 44455555555555544443332222 222233333444444444455554444433
No 420
>PF12854 PPR_1: PPR repeat
Probab=70.78 E-value=12 Score=22.34 Aligned_cols=26 Identities=12% Similarity=-0.023 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006562 585 SKAYHLRGLLLHGLGQHKKAIKDLSS 610 (640)
Q Consensus 585 ~~~~~~la~~~~~~g~~~~A~~~~~~ 610 (640)
...|..+-..|.+.|+.++|.+.|++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 34455555555555555555555543
No 421
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=69.48 E-value=1.2e+02 Score=30.37 Aligned_cols=55 Identities=18% Similarity=0.118 Sum_probs=41.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCC-----HHHH--HHHHHHHHHccCHHHHHHHHHH
Q 006562 386 SRGIAQVNEGKYASAISIFDQILKEDPMY-----PEAL--IGRGTARAFQRELEAAISDFTE 440 (640)
Q Consensus 386 ~~a~~~~~~g~~~~A~~~~~~~l~~~~~~-----~~~~--~~la~~~~~~g~~~~A~~~~~~ 440 (640)
..+..++..++|..|...|+++....+.. ...+ ...|..++..-++++|.+.+++
T Consensus 135 ~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 135 GYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 45668899999999999999999875421 2233 3445556778899999999986
No 422
>PF13041 PPR_2: PPR repeat family
Probab=68.79 E-value=25 Score=22.99 Aligned_cols=32 Identities=3% Similarity=-0.027 Sum_probs=19.9
Q ss_pred CchhHHHhHHHHHHhhhcHHHHHHHHHHHHHc
Q 006562 67 YEIQDICNRAFCYSQLELHKHVIRDCDKALQL 98 (640)
Q Consensus 67 ~~~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~ 98 (640)
||...|...-.+|.+.|++++|+..+++..+.
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 34445555556666677777777766666654
No 423
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=66.58 E-value=37 Score=36.54 Aligned_cols=116 Identities=16% Similarity=0.129 Sum_probs=73.4
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHH---cCCHHHHHHHHHHHHHhC-CCCH
Q 006562 414 YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG------EAWKRRGQARAA---LGESVEAIQDLSKALEFE-PNSA 483 (640)
Q Consensus 414 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~---~~~~~~A~~~~~~al~~~-p~~~ 483 (640)
.++...++-..|....+|+.-++..+..-.+ |+.. .+.+..+-++.+ -|+-++|+...-.+++.. |-.+
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i-P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap 278 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI-PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP 278 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHHhC-cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence 4677777888888888898877777665433 4321 122223333322 367788888887777764 3446
Q ss_pred HHHHHHHHHHHh---------cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 006562 484 DILHERGIVNFK---------FKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIG 531 (640)
Q Consensus 484 ~~~~~la~~~~~---------~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g 531 (640)
+.+...|++|-. .+..+.|+++|+++.+..|... .=.+++.++...|
T Consensus 279 Dm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~-sGIN~atLL~aaG 334 (1226)
T KOG4279|consen 279 DMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEY-SGINLATLLRAAG 334 (1226)
T ss_pred ceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhh-ccccHHHHHHHhh
Confidence 777777887753 3456778888888888887543 2234455555444
No 424
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=66.42 E-value=11 Score=22.09 Aligned_cols=26 Identities=15% Similarity=0.267 Sum_probs=19.9
Q ss_pred CHHHHHHHHHHHHcccCchhHHHhHH
Q 006562 51 NWSKAIRILDSLLAQSYEIQDICNRA 76 (640)
Q Consensus 51 ~y~~Ai~~y~~ai~~~~~~~~~~~~A 76 (640)
.+++|...|++.+...|++..+..-|
T Consensus 2 E~dRAR~IyeR~v~~hp~~k~WikyA 27 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPEVKNWIKYA 27 (32)
T ss_pred hHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 57788888888888888777766544
No 425
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=66.17 E-value=1.2e+02 Score=28.75 Aligned_cols=128 Identities=13% Similarity=0.115 Sum_probs=71.1
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhC-CCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHH---HHH
Q 006562 421 RGTARAFQRELEAAISDFTEAIQSN-PSA-----GEAWKRRGQARAALGESVEAIQDLSKALEFEPN---SADI---LHE 488 (640)
Q Consensus 421 la~~~~~~g~~~~A~~~~~~al~~~-p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~---~~~ 488 (640)
.+..-......++-++.+.+.++.. .++ .+++.++|..|.+.++.+.+.+++.+.++..-. ..++ ...
T Consensus 81 ~~~~n~l~kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiR 160 (412)
T COG5187 81 RGRMNTLLKKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIR 160 (412)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHH
Confidence 3333333344455555564444322 122 467778888888888888888877776654321 1222 334
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHccCc
Q 006562 489 RGIVNFKFKDFNAAVEDLSACVKLDKENK---SAYTYLGLALSSIGEYKKAEEAHLKAIQLDR 548 (640)
Q Consensus 489 la~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 548 (640)
+|.+|-.+.-.++.++.....++...+.. ......|.......++.+|-..+...+....
T Consensus 161 lg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~ 223 (412)
T COG5187 161 LGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFE 223 (412)
T ss_pred HHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcccc
Confidence 45555554445556666666665543321 2333456666666777777777776665443
No 426
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=64.61 E-value=1.4e+02 Score=28.93 Aligned_cols=102 Identities=10% Similarity=-0.051 Sum_probs=62.5
Q ss_pred ccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH---
Q 006562 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPM------YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG--- 449 (640)
Q Consensus 379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--- 449 (640)
.-.+++..+|..|.+.||-+.|.+.+.+..+..-. -.-....+|..|....-..+.++..+..++...+..
T Consensus 102 ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrN 181 (393)
T KOG0687|consen 102 EVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRN 181 (393)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhh
Confidence 34567888888888888888888888877654321 123344556666555444455555555555443321
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 006562 450 EAWKRRGQARAALGESVEAIQDLSKALEFEP 480 (640)
Q Consensus 450 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 480 (640)
..-...|...+...++.+|...|-..+....
T Consensus 182 RlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFt 212 (393)
T KOG0687|consen 182 RLKVYQGLYCMSVRNFKEAADLFLDSVSTFT 212 (393)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHccccc
Confidence 1223346666677788888888877766543
No 427
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.94 E-value=56 Score=25.23 Aligned_cols=44 Identities=14% Similarity=0.096 Sum_probs=37.3
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHHHHHHHh
Q 006562 102 LLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLE 145 (640)
Q Consensus 102 ~~~a~~~~g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 145 (640)
-+-.|-.+|..|...|+.+.|++.|+.--.+.|+......+++.
T Consensus 71 pPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~fmDFLmk 114 (121)
T COG4259 71 PPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGVFMDFLMK 114 (121)
T ss_pred CCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchhHHHHHHH
Confidence 45588899999999999999999999888888988777776653
No 428
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=61.92 E-value=2e+02 Score=29.84 Aligned_cols=201 Identities=12% Similarity=-0.025 Sum_probs=120.9
Q ss_pred CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 006562 377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG 456 (640)
Q Consensus 377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 456 (640)
.|.+-..+..+-..+-.+..+.-...++.+++... .+-.+++.++.||... ..+.-...+++.++.+-++...-..++
T Consensus 62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa 139 (711)
T COG1747 62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELA 139 (711)
T ss_pred ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHH
Confidence 34444444444445544455555566777777754 4578899999999988 567788899999999888887777888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CC--CH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-cHHH-HHHHHHHHH
Q 006562 457 QARAALGESVEAIQDLSKALEFE-PN--SA---DILHERGIVNFKFKDFNAAVEDLSACVKLDKE-NKSA-YTYLGLALS 528 (640)
Q Consensus 457 ~~~~~~~~~~~A~~~~~~al~~~-p~--~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~-~~~la~~~~ 528 (640)
..|.. ++-..+..+|.+++... |. +. ++|..+-. +--.+.+.-+....+.-..... ...+ +...-.-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~--~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPE--LIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHH--hccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 88776 88899999999987643 21 11 12222111 1122333333333332222211 1122 222224455
Q ss_pred HcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHH--------------------hcCHHHHHHHHHHHHHhCC
Q 006562 529 SIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD--------------------LANSEKALECLQQVLYIDK 582 (640)
Q Consensus 529 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~--------------------~g~~~~A~~~~~~al~~~~ 582 (640)
...++++|++.+...++.+..+..+.-.+...+.. -.++..++.-|++.+..+.
T Consensus 217 ~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~e 290 (711)
T COG1747 217 ENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDE 290 (711)
T ss_pred cccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheecc
Confidence 56788888888888888777666555544444333 3456677777777665443
No 429
>PRK12798 chemotaxis protein; Reviewed
Probab=61.56 E-value=1.9e+02 Score=29.31 Aligned_cols=231 Identities=12% Similarity=0.082 Sum_probs=145.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcHHHHHHHH-HHHHHcCC
Q 006562 388 GIAQVNEGKYASAISIFDQILKEDPM-YPEALIGRGTARAFQRELEAAISDFTEAIQSN-PSAGEAWKRRG-QARAALGE 464 (640)
Q Consensus 388 a~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la-~~~~~~~~ 464 (640)
+.+|...|--...++ .++..++. +.+.-..-|..-+-.|+-.++...+..+-... |...-.+..|. -..+...+
T Consensus 87 a~iy~lSGGnP~vlr---~L~~~d~~~~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~d 163 (421)
T PRK12798 87 ALIYLLSGGNPATLR---KLLARDKLGNFDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATD 163 (421)
T ss_pred HHhhHhcCCCHHHHH---HHHHcCCCChhhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccC
Confidence 345555554444443 33444433 45566666777778899999988887653221 22222333333 33445678
Q ss_pred HHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHH---HHHHHHHHHHcCCHHHHHH
Q 006562 465 SVEAIQDLSKALEFEPNSA---DILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSA---YTYLGLALSSIGEYKKAEE 538 (640)
Q Consensus 465 ~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~---~~~la~~~~~~g~~~~A~~ 538 (640)
...|+..|+.+-=..|... -++..-..+....|+.+++..+..+.+.....++.+ +..+.......++-.. ..
T Consensus 164 P~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~-~~ 242 (421)
T PRK12798 164 PATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIR-DA 242 (421)
T ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcccccc-HH
Confidence 9999999999988888762 244444556678899999999888888877666533 3333444444432221 22
Q ss_pred HHHHHHcc-Ccc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC----CChHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 006562 539 AHLKAIQL-DRN-FLEAWGHLTQFYQDLANSEKALECLQQVLYIDK----RFSKAYHLRGLLLHGLGQHKKAIKDLSSGL 612 (640)
Q Consensus 539 ~~~~a~~~-~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al 612 (640)
.+...+.. +|. ....|..+++.-...|+.+-|.-.-++++.+.. +...+.+..+....-..++++|+..+...-
T Consensus 243 ~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~ 322 (421)
T PRK12798 243 RLVEILSFMDPERQRELYLRIARAALIDGKTELARFASERALKLADPDSADAARARLYRGAALVASDDAESALEELSQID 322 (421)
T ss_pred HHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCC
Confidence 34455544 333 367888899999999999999999999988753 234455555666666777888888877653
Q ss_pred --ccCCCCHHHH
Q 006562 613 --GIDPSNIECL 622 (640)
Q Consensus 613 --~~~p~~~~~~ 622 (640)
++.|.+...+
T Consensus 323 ~~~L~~~Dr~Ll 334 (421)
T PRK12798 323 RDKLSERDRALL 334 (421)
T ss_pred hhhCChhhHHHH
Confidence 3445554433
No 430
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=61.41 E-value=25 Score=25.68 Aligned_cols=16 Identities=13% Similarity=0.081 Sum_probs=7.2
Q ss_pred HHHHHHcCCCchHHHH
Q 006562 92 CDKALQLDPTLLQAYI 107 (640)
Q Consensus 92 ~~~al~~~P~~~~a~~ 107 (640)
+.+++...|+...-..
T Consensus 36 L~q~~~~~pD~~~k~~ 51 (75)
T cd02682 36 LSQIVKNYPDSPTRLI 51 (75)
T ss_pred HHHHHHhCCChHHHHH
Confidence 3344444555554333
No 431
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=61.29 E-value=1.3e+02 Score=27.40 Aligned_cols=60 Identities=13% Similarity=0.107 Sum_probs=39.2
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Q 006562 389 IAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA 448 (640)
Q Consensus 389 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 448 (640)
..++..+...+|+...+.-++..|.+......+-..+.-.|+|++|...++-+-+..|++
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 345556666666666666666666666666666666666666666666666666666654
No 432
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.75 E-value=1.3e+02 Score=31.87 Aligned_cols=79 Identities=20% Similarity=0.229 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 006562 451 AWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSI 530 (640)
Q Consensus 451 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 530 (640)
.....+..+..+|-.++|+ .+.++. +-.+ .+..+.|+++.|.....++ ++..-|..||.+....
T Consensus 616 ~rt~va~Fle~~g~~e~AL-------~~s~D~-d~rF---elal~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~ 679 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQAL-------ELSTDP-DQRF---ELALKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSA 679 (794)
T ss_pred hhhhHHhHhhhccchHhhh-------hcCCCh-hhhh---hhhhhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhc
Confidence 3444555555565555544 333322 2222 3445677777777665553 5566778888888888
Q ss_pred CCHHHHHHHHHHHHc
Q 006562 531 GEYKKAEEAHLKAIQ 545 (640)
Q Consensus 531 g~~~~A~~~~~~a~~ 545 (640)
+++..|.++|.++..
T Consensus 680 ~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 680 GELPLASECFLRARD 694 (794)
T ss_pred ccchhHHHHHHhhcc
Confidence 888888888887654
No 433
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.38 E-value=1.7e+02 Score=31.09 Aligned_cols=132 Identities=18% Similarity=0.134 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 006562 383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL 462 (640)
Q Consensus 383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 462 (640)
.....+..+-.+|-.++|+ +..++ +.-.+ .+..+.|+++.|..+..++ ++..-|..||.+....
T Consensus 616 ~rt~va~Fle~~g~~e~AL-------~~s~D-~d~rF---elal~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~ 679 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQAL-------ELSTD-PDQRF---ELALKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSA 679 (794)
T ss_pred hhhhHHhHhhhccchHhhh-------hcCCC-hhhhh---hhhhhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhc
Confidence 3444555555566555554 44443 22222 3445678888887776554 4566788899999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006562 463 GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLK 542 (640)
Q Consensus 463 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 542 (640)
+++..|.++|.++.... .+-.++...|+-+.-...-..+-+....|.. -.+++..|+++++.+.+.+
T Consensus 680 ~~l~lA~EC~~~a~d~~--------~LlLl~t~~g~~~~l~~la~~~~~~g~~N~A-----F~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 680 GELPLASECFLRARDLG--------SLLLLYTSSGNAEGLAVLASLAKKQGKNNLA-----FLAYFLSGDYEECLELLIS 746 (794)
T ss_pred ccchhHHHHHHhhcchh--------hhhhhhhhcCChhHHHHHHHHHHhhcccchH-----HHHHHHcCCHHHHHHHHHh
Confidence 99999999998875432 1222333344433222222222222222221 2345667777777777665
Q ss_pred H
Q 006562 543 A 543 (640)
Q Consensus 543 a 543 (640)
.
T Consensus 747 t 747 (794)
T KOG0276|consen 747 T 747 (794)
T ss_pred c
Confidence 4
No 434
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=60.05 E-value=58 Score=26.91 Aligned_cols=51 Identities=8% Similarity=-0.012 Sum_probs=22.4
Q ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 006562 563 DLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLG 613 (640)
Q Consensus 563 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 613 (640)
.+|+-++--+.+.........+|..+..+|.+|.+.|+..+|-+.+.+|-+
T Consensus 98 ~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 98 KQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 344444444444444433334455555555555555555555555555543
No 435
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=56.05 E-value=21 Score=20.08 Aligned_cols=19 Identities=21% Similarity=0.144 Sum_probs=7.6
Q ss_pred HHHHHhcCCHHHHHHHHHH
Q 006562 490 GIVNFKFKDFNAAVEDLSA 508 (640)
Q Consensus 490 a~~~~~~~~~~~A~~~~~~ 508 (640)
-..|.+.|++++|.+.+++
T Consensus 7 i~~~~~~~~~~~a~~~~~~ 25 (31)
T PF01535_consen 7 ISGYCKMGQFEEALEVFDE 25 (31)
T ss_pred HHHHHccchHHHHHHHHHH
Confidence 3333344444444444433
No 436
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=55.86 E-value=1.9e+02 Score=27.49 Aligned_cols=130 Identities=15% Similarity=0.166 Sum_probs=87.5
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH------HHcCCHHHH
Q 006562 397 YASAISIFDQILKEDPMYPEALIGRGTARAFQ--RELEAAISDFTEAIQSNPSAGEAWKRRGQAR------AALGESVEA 468 (640)
Q Consensus 397 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~~~------~~~~~~~~A 468 (640)
.+.-+..+..+++-+|.+..+|...-.++..- .++..-....++.++.++.+..+|...-.+. .....+..-
T Consensus 90 ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e 169 (328)
T COG5536 90 LDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHE 169 (328)
T ss_pred hhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHH
Confidence 45667778889999999998888877776554 5677778888999999998877766544443 334445555
Q ss_pred HHHHHHHHHhCCCCHHHHHHH---HHHHHhcCC------HHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 006562 469 IQDLSKALEFEPNSADILHER---GIVNFKFKD------FNAAVEDLSACVKLDKENKSAYTYLGLA 526 (640)
Q Consensus 469 ~~~~~~al~~~p~~~~~~~~l---a~~~~~~~~------~~~A~~~~~~al~~~~~~~~~~~~la~~ 526 (640)
.++-..++..++.+..+|... -...+..|+ +++-+++.-.++-.+|++..+|..+-.+
T Consensus 170 ~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~r~~ 236 (328)
T COG5536 170 LEYTTSLIETDIYNNSAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYLRGV 236 (328)
T ss_pred HHhHHHHHhhCCCChHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhhHHHHH
Confidence 666677788888888877665 333333443 3444555555566677776666655433
No 437
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=55.37 E-value=25 Score=25.85 Aligned_cols=18 Identities=11% Similarity=0.045 Sum_probs=11.9
Q ss_pred hcCCHHHHHHHHHHHHcc
Q 006562 48 SLRNWSKAIRILDSLLAQ 65 (640)
Q Consensus 48 ~~~~y~~Ai~~y~~ai~~ 65 (640)
..|+|++|+.+|.++|+.
T Consensus 18 ~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 18 QEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HccCHHHHHHHHHHHHHH
Confidence 566777777777776643
No 438
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=55.04 E-value=2.4e+02 Score=28.44 Aligned_cols=23 Identities=26% Similarity=0.043 Sum_probs=12.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHh
Q 006562 589 HLRGLLLHGLGQHKKAIKDLSSG 611 (640)
Q Consensus 589 ~~la~~~~~~g~~~~A~~~~~~a 611 (640)
..-|.+.+.+++|..|..+|-.+
T Consensus 233 C~agLa~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 233 CAAGLANLLLKKYKSAAKYFLLA 255 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Confidence 33344444555666666666544
No 439
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=54.41 E-value=1.3e+02 Score=25.09 Aligned_cols=27 Identities=22% Similarity=0.144 Sum_probs=14.4
Q ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 006562 565 ANSEKALECLQQVLYIDKRFSKAYHLRGLLLH 596 (640)
Q Consensus 565 g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 596 (640)
++++.|++++.+ +.++..|..++..+.
T Consensus 110 ~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 110 GNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred cCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 556666665554 234555655554443
No 440
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=53.97 E-value=85 Score=22.99 Aligned_cols=28 Identities=14% Similarity=0.222 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 006562 382 DFRLSRGIAQVNEGKYASAISIFDQILK 409 (640)
Q Consensus 382 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~ 409 (640)
..+...|.-+-..|++.+|+.+|+++++
T Consensus 7 ~~~a~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 7 RKYAINAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3455566666677777777666665543
No 441
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=53.62 E-value=25 Score=25.96 Aligned_cols=16 Identities=6% Similarity=0.071 Sum_probs=8.8
Q ss_pred hcCCHHHHHHHHHHHH
Q 006562 48 SLRNWSKAIRILDSLL 63 (640)
Q Consensus 48 ~~~~y~~Ai~~y~~ai 63 (640)
..|+|++|+.+|.++|
T Consensus 18 ~~g~y~eAl~~Y~~ai 33 (77)
T cd02683 18 QEGRFQEALVCYQEGI 33 (77)
T ss_pred HhccHHHHHHHHHHHH
Confidence 4455555555555554
No 442
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=52.72 E-value=20 Score=26.23 Aligned_cols=10 Identities=20% Similarity=0.318 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 006562 54 KAIRILDSLL 63 (640)
Q Consensus 54 ~Ai~~y~~ai 63 (640)
+|+....+|+
T Consensus 5 ~A~~l~~~Av 14 (75)
T cd02677 5 QAAELIRLAL 14 (75)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 443
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=51.80 E-value=61 Score=35.22 Aligned_cols=100 Identities=20% Similarity=0.195 Sum_probs=62.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHH--cCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHH
Q 006562 490 GIVNFKFKDFNAAVEDLSACVKLDKEN----KSAYTYLGLALSS--IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD 563 (640)
Q Consensus 490 a~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~--~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 563 (640)
+..++..+++..+.--|..++.+-|.+ .....+.+.++.. .|++..++.-..-++...|....+....+..|..
T Consensus 60 ~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~a 139 (748)
T KOG4151|consen 60 GNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKYEA 139 (748)
T ss_pred hhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHHH
Confidence 556666677777766666666666633 2233334444443 4567777777777777777777777777777777
Q ss_pred hcCHHHHHHHHHHHHHhCCCChHHHH
Q 006562 564 LANSEKALECLQQVLYIDKRFSKAYH 589 (640)
Q Consensus 564 ~g~~~~A~~~~~~al~~~~~~~~~~~ 589 (640)
.+..+-|++.+.-.....|....+..
T Consensus 140 l~k~d~a~rdl~i~~~~~p~~~~~~e 165 (748)
T KOG4151|consen 140 LNKLDLAVRDLRIVEKMDPSNVSASE 165 (748)
T ss_pred HHHHHHHHHHHHHHhcCCCCcchHHH
Confidence 77777777766555566666654443
No 444
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=51.79 E-value=44 Score=29.97 Aligned_cols=48 Identities=21% Similarity=0.159 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc
Q 006562 86 KHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHAL 134 (640)
Q Consensus 86 ~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~~~~A~~~~~~al~~~~ 134 (640)
...+...++.+...| ++..+.+++.++..+|+.++|.....++..+-|
T Consensus 128 ~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 128 EAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 344445556666666 455666667777777777777777777766666
No 445
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=51.30 E-value=1.5e+02 Score=28.66 Aligned_cols=112 Identities=14% Similarity=0.146 Sum_probs=63.5
Q ss_pred hhhhccccccchhhHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHcccCchhHHHhHHHHHHhhhcHHHHHHH-HHHHH
Q 006562 18 KTICEIDELVRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRD-CDKAL 96 (640)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~Ai~~y~~ai~~~~~~~~~~~~A~~~~~~g~~~~Ai~~-~~~al 96 (640)
..-.++.++......+.........+..++..|||..|+......-..-.....+.-....-.++.+...-+.. .+..+
T Consensus 109 rkr~~l~~ll~~L~~i~~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~l~~~~c~~~L~~~L~e~~~~i~~~ld~~l 188 (291)
T PF10475_consen 109 RKRQNLKKLLEKLEQIKTVQQTQSRLQELLEEGDYPGALDLIEECQQLLEELKGYSCVRHLSSQLQETLELIEEQLDSDL 188 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccchHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33333445555566666667777888899999999999999988755432211121111122222232222221 11111
Q ss_pred HcC--CCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006562 97 QLD--PTLLQAYILKGCAFSALGRKEEALSVWEKG 129 (640)
Q Consensus 97 ~~~--P~~~~a~~~~g~~y~~~g~~~~A~~~~~~a 129 (640)
..- --++..|..+-.+|..+|+.+.+..-+...
T Consensus 189 ~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~~~ 223 (291)
T PF10475_consen 189 SKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKLQMH 223 (291)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 111 124457888888999999888887444443
No 446
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=50.73 E-value=34 Score=24.46 Aligned_cols=18 Identities=11% Similarity=0.303 Sum_probs=12.4
Q ss_pred hcCCHHHHHHHHHHHHcc
Q 006562 48 SLRNWSKAIRILDSLLAQ 65 (640)
Q Consensus 48 ~~~~y~~Ai~~y~~ai~~ 65 (640)
..|+|++|+.+|.++|+.
T Consensus 17 ~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 17 EAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HTTSHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 467777777777777643
No 447
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=50.17 E-value=2.3e+02 Score=26.75 Aligned_cols=200 Identities=16% Similarity=0.133 Sum_probs=108.0
Q ss_pred HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHH-HHHHHHHHHcCCHHHHHHH
Q 006562 393 NEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAW-KRRGQARAALGESVEAIQD 471 (640)
Q Consensus 393 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~~la~~~~~~~~~~~A~~~ 471 (640)
.+-....|+..+...+......+.+....|.++-..| ......++.+.. .+|.-.-.- ..+|.-+...++--..+..
T Consensus 61 gQ~~~~~Av~~l~~vl~desq~pmvRhEAaealga~~-~~~~~~~l~k~~-~dp~~~v~ETc~lAi~rle~~~~~~~~~~ 138 (289)
T KOG0567|consen 61 GQMQDEDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-DPESLEILTKYI-KDPCKEVRETCELAIKRLEWKDIIDKIAN 138 (289)
T ss_pred hhhccchhhHHHHHHhcccccchHHHHHHHHHHHhhc-chhhHHHHHHHh-cCCccccchHHHHHHHHHHHhhccccccc
Confidence 3444566777777776666666777777777777777 555666666666 444321100 2222222211111111000
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccH
Q 006562 472 LSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL 551 (640)
Q Consensus 472 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 551 (640)
-......+|.-+... +...+ ++. .-++++.+....+.+..+.+.-.-++|+..+-..+..+ +.
T Consensus 139 ~~p~~SvdPa~p~~~----------ssv~~----lr~-~lld~t~~l~~Ry~amF~LRn~g~EeaI~al~~~l~~~--Sa 201 (289)
T KOG0567|consen 139 SSPYISVDPAPPANL----------SSVHE----LRA-ELLDETKPLFERYRAMFYLRNIGTEEAINALIDGLADD--SA 201 (289)
T ss_pred cCccccCCCCCcccc----------ccHHH----HHH-HHHhcchhHHHHHhhhhHhhccCcHHHHHHHHHhcccc--hH
Confidence 001112333332100 01111 111 11223344455556666666555688888887777654 45
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 006562 552 EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLG 613 (640)
Q Consensus 552 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 613 (640)
-.....|.++-+++ -..|+..+.+.+.....++.+...-+.++...++ +++++.+++.+.
T Consensus 202 lfrhEvAfVfGQl~-s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~-e~~~~vL~e~~~ 261 (289)
T KOG0567|consen 202 LFRHEVAFVFGQLQ-SPAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD-EDCVEVLKEYLG 261 (289)
T ss_pred HHHHHHHHHHhhcc-chhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC-HHHHHHHHHHcC
Confidence 55555666665554 3568888888888888888888888888777776 467777766543
No 448
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=49.70 E-value=42 Score=24.56 Aligned_cols=15 Identities=13% Similarity=0.093 Sum_probs=6.4
Q ss_pred hcHHHHHHHHHHHHH
Q 006562 83 ELHKHVIRDCDKALQ 97 (640)
Q Consensus 83 g~~~~Ai~~~~~al~ 97 (640)
|+|++|+..|..||+
T Consensus 20 gny~eA~~lY~~ale 34 (75)
T cd02680 20 GNAEEAIELYTEAVE 34 (75)
T ss_pred hhHHHHHHHHHHHHH
Confidence 344444444444433
No 449
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=49.37 E-value=25 Score=25.71 Aligned_cols=15 Identities=27% Similarity=0.552 Sum_probs=10.5
Q ss_pred CCHHHHHHHHHHHHh
Q 006562 117 GRKEEALSVWEKGYE 131 (640)
Q Consensus 117 g~~~~A~~~~~~al~ 131 (640)
|++++|...|..+++
T Consensus 20 ~~y~eA~~~Y~~~i~ 34 (75)
T cd02677 20 GDYEAAFEFYRAGVD 34 (75)
T ss_pred hhHHHHHHHHHHHHH
Confidence 677777777777754
No 450
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=48.81 E-value=40 Score=19.34 Aligned_cols=21 Identities=24% Similarity=0.254 Sum_probs=9.0
Q ss_pred HHHHHHHhcCHHHHHHHHHHH
Q 006562 557 LTQFYQDLANSEKALECLQQV 577 (640)
Q Consensus 557 la~~~~~~g~~~~A~~~~~~a 577 (640)
+-..|.+.|++++|...|.+.
T Consensus 6 li~~~~~~~~~~~a~~~~~~M 26 (35)
T TIGR00756 6 LIDGLCKAGRVEEALELFKEM 26 (35)
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 333344444444444444443
No 451
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=48.46 E-value=35 Score=25.00 Aligned_cols=16 Identities=38% Similarity=0.518 Sum_probs=9.2
Q ss_pred ccCHHHHHHHHHHHHH
Q 006562 428 QRELEAAISDFTEAIQ 443 (640)
Q Consensus 428 ~g~~~~A~~~~~~al~ 443 (640)
.|+|++|+.+|..+++
T Consensus 19 ~gny~eA~~lY~~ale 34 (75)
T cd02680 19 KGNAEEAIELYTEAVE 34 (75)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 3556666666655554
No 452
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=47.38 E-value=95 Score=24.65 Aligned_cols=48 Identities=21% Similarity=0.173 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Q 006562 382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQR 429 (640)
Q Consensus 382 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g 429 (640)
...+..|...+..||+..|.+.+.++-+..+..+-.+..-+.+-..+|
T Consensus 60 ~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~g 107 (108)
T PF07219_consen 60 QRALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQG 107 (108)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Confidence 344556666677777777777777775554444444444455544444
No 453
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=46.45 E-value=2.2e+02 Score=25.60 Aligned_cols=58 Identities=12% Similarity=-0.005 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHH
Q 006562 451 AWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERG-IVNFKFKDFNAAVEDLSA 508 (640)
Q Consensus 451 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la-~~~~~~~~~~~A~~~~~~ 508 (640)
.+..+-......|+++.|-+.|--++...+-+......+| .++...+.-....++++.
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~ 101 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEW 101 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHH
Confidence 3444455556677777777777777776655554444444 344444433333333333
No 454
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=46.28 E-value=2.7e+02 Score=26.45 Aligned_cols=199 Identities=15% Similarity=0.066 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHccCHH-HHHHHHHHHHHhC------CCc
Q 006562 381 VDFRLSRGIAQVNEGKYASAISIFDQILKE-----DPMYPEALIGRGTARAFQRELE-AAISDFTEAIQSN------PSA 448 (640)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-----~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~------p~~ 448 (640)
.+.++.=+..+++.|++..|.++..-.++. .+.+....-.++.+....+.-+ +-....+++++.. -.+
T Consensus 10 idLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gd 89 (260)
T PF04190_consen 10 IDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGD 89 (260)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--
T ss_pred HHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCC
Confidence 445555666777777777776665544432 2334444455555555443222 2233334444322 236
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH-
Q 006562 449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHE--RGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGL- 525 (640)
Q Consensus 449 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~- 525 (640)
+..+..+|..+++.+++.+|..+|-.. +++..... +-... ...-.|.....+...+.
T Consensus 90 p~LH~~~a~~~~~e~~~~~A~~Hfl~~-----~~~~~~~~~~ll~~~---------------~~~~~~~e~dlfi~RaVL 149 (260)
T PF04190_consen 90 PELHHLLAEKLWKEGNYYEAERHFLLG-----TDPSAFAYVMLLEEW---------------STKGYPSEADLFIARAVL 149 (260)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHTS------HHHHHHHHHHHHHH---------------HHHTSS--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHhc-----CChhHHHHHHHHHHH---------------HHhcCCcchhHHHHHHHH
Confidence 788999999999999988887776432 12121111 11111 11223334444444433
Q ss_pred HHHHcCCHHHHHHHHHHHHcc----Cc-----------ccHHHHH-HHHHHHHHhcC---HHHHHHHHHHHHHhCCCChH
Q 006562 526 ALSSIGEYKKAEEAHLKAIQL----DR-----------NFLEAWG-HLTQFYQDLAN---SEKALECLQQVLYIDKRFSK 586 (640)
Q Consensus 526 ~~~~~g~~~~A~~~~~~a~~~----~~-----------~~~~~~~-~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~ 586 (640)
.|...++...|...+....+. +| ..|...+ .+-..-++.++ +..-.+.|+..++.+|....
T Consensus 150 ~yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~~~~~~F~~L~~~Y~~~L~rd~~~~~ 229 (260)
T PF04190_consen 150 QYLCLGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCERDNLPLFKKLCEKYKPSLKRDPSFKE 229 (260)
T ss_dssp HHHHTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHHT-HHHHHHHHHHTHH---HHHHTHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhcCcHHHHHHHHHHhCccccccHHHHH
Confidence 344567777776655554433 11 1121111 11111222333 23334455555666677777
Q ss_pred HHHHHHHHHHhcC
Q 006562 587 AYHLRGLLLHGLG 599 (640)
Q Consensus 587 ~~~~la~~~~~~g 599 (640)
....+|..|+...
T Consensus 230 ~L~~IG~~yFgi~ 242 (260)
T PF04190_consen 230 YLDKIGQLYFGIQ 242 (260)
T ss_dssp HHHHHHHHHH---
T ss_pred HHHHHHHHHCCCC
Confidence 7778888887644
No 455
>PF09145 Ubiq-assoc: Ubiquitin-associated; InterPro: IPR015228 Ubiquitin-associated domains contain approximately 40 residues and bind ubiquitin noncovalently. They adopt a secondary structure consisting of three alpha-helices, and have been identified in various modular proteins involved in protein trafficking, clathrin assembly/disassembly, DNA repair, proteasomal degradation, and cell cycle regulation []. ; PDB: 1PGY_A.
Probab=46.19 E-value=38 Score=21.48 Aligned_cols=25 Identities=32% Similarity=0.316 Sum_probs=18.9
Q ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHc
Q 006562 40 RIELAKLCSLR-NWSKAIRILDSLLA 64 (640)
Q Consensus 40 ~~~~~~~~~~~-~y~~Ai~~y~~ai~ 64 (640)
..+.|+++..| ++++|..+|++.|-
T Consensus 7 DMEiAkLMSLGLsid~A~~yYe~Gi~ 32 (46)
T PF09145_consen 7 DMEIAKLMSLGLSIDKANDYYERGIL 32 (46)
T ss_dssp HHHHHHHHHH---SHHHHHHHHHH-S
T ss_pred HHHHHHHHHccCCHHHHHHHHHcCch
Confidence 36788999988 99999999999874
No 456
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=45.96 E-value=2.8e+02 Score=26.54 Aligned_cols=132 Identities=14% Similarity=0.062 Sum_probs=88.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHh-CCC-----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---cHH---HH
Q 006562 385 LSRGIAQVNEGKYASAISIFDQILKE-DPM-----YPEALIGRGTARAFQRELEAAISDFTEAIQSNPS---AGE---AW 452 (640)
Q Consensus 385 ~~~a~~~~~~g~~~~A~~~~~~~l~~-~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~---~~ 452 (640)
+..+..--.....++-++.+++.++. ..+ -.+++.++|..|.+.++.+.+.+.+.+.+...-. -.+ .-
T Consensus 79 fD~~~~n~l~kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~k 158 (412)
T COG5187 79 FDRGRMNTLLKKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCK 158 (412)
T ss_pred hhhHHHHHHHHhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHH
Confidence 44444444445556677777665543 222 2688999999999999999999999988765422 123 33
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 006562 453 KRRGQARAALGESVEAIQDLSKALEFEPNSA---DILHERGIVNFKFKDFNAAVEDLSACVKLDKEN 516 (640)
Q Consensus 453 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 516 (640)
..+|.+|..+.-.++.++.....++...+-. ..-...|...+...++.+|-..+...+......
T Consensus 159 iRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S~ 225 (412)
T COG5187 159 IRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFESS 225 (412)
T ss_pred HHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcccccc
Confidence 4567777666666777777777777654321 233345777777888999998888887665443
No 457
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=45.85 E-value=2.1e+02 Score=25.22 Aligned_cols=183 Identities=16% Similarity=0.071 Sum_probs=118.0
Q ss_pred CCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCCCCHHHH
Q 006562 413 MYPEALIGRGTARAF-QRELEAAISDFTEAIQSNPSAGEAWKRRGQARAA-----LGESVEAIQDLSKALEFEPNSADIL 486 (640)
Q Consensus 413 ~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-----~~~~~~A~~~~~~al~~~p~~~~~~ 486 (640)
..|+....||..+.. ..++++|...|..--..+. .+...+.+|..+.. .++...|++.+..+-. .+.+.+.
T Consensus 32 K~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden~-y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC 108 (248)
T KOG4014|consen 32 KRPESCQLLGDYLEGIQKNFQAAVKVFKKNCDENS-YPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQAC 108 (248)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccC-CcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHH
Confidence 356777777776543 4578888888776554432 34555556655442 3578889999988876 4567777
Q ss_pred HHHHHHHHhc-----C--CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcc--cHHHHHHH
Q 006562 487 HERGIVNFKF-----K--DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN--FLEAWGHL 557 (640)
Q Consensus 487 ~~la~~~~~~-----~--~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~--~~~~~~~l 557 (640)
..+|.++..- + +..+|.+++.++-.+. +..+.+.|...+..-. ++ +....|. .+. ..
T Consensus 109 ~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g~--~k-------~~t~ap~~g~p~---~~ 174 (248)
T KOG4014|consen 109 RYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE--DGEACFLLSTMYMGGK--EK-------FKTNAPGEGKPL---DR 174 (248)
T ss_pred hhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHHhccc--hh-------hcccCCCCCCCc---ch
Confidence 7888877642 2 3778999999988774 4556666666554322 22 2222331 121 12
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHhhcc
Q 006562 558 TQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG----LGQHKKAIKDLSSGLGI 614 (640)
Q Consensus 558 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~ 614 (640)
+..+.-..+.+.|.++--++-++. ++.+-.++.+.|.. -.+.++|..+-.++.++
T Consensus 175 ~~~~~~~kDMdka~qfa~kACel~--~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~ 233 (248)
T KOG4014|consen 175 AELGSLSKDMDKALQFAIKACELD--IPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEI 233 (248)
T ss_pred hhhhhhhHhHHHHHHHHHHHHhcC--ChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence 334455678899999998887764 56777777777654 23677888887777665
No 458
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=45.28 E-value=58 Score=26.51 Aligned_cols=37 Identities=11% Similarity=0.186 Sum_probs=27.4
Q ss_pred HHHHHHHHH-HHHhcCCHHHHHHHHHHHHcccCchhHH
Q 006562 36 AITARIELA-KLCSLRNWSKAIRILDSLLAQSYEIQDI 72 (640)
Q Consensus 36 ~~~~~~~~~-~~~~~~~y~~Ai~~y~~ai~~~~~~~~~ 72 (640)
.+.+.+.++ .++..|++.+|+.+|-+||...|+|..+
T Consensus 62 ~Fl~qV~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~L 99 (121)
T PF02064_consen 62 FFLQQVQLGEQLLAQGDYEEAAEHFYNALKVCPQPAEL 99 (121)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTSSSHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHH
Confidence 344445555 5578899999999999999999887654
No 459
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.27 E-value=5.6e+02 Score=29.92 Aligned_cols=115 Identities=17% Similarity=0.093 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH-----------------------------HHHHHHHHHHHHcCCH
Q 006562 415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG-----------------------------EAWKRRGQARAALGES 465 (640)
Q Consensus 415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----------------------------~~~~~la~~~~~~~~~ 465 (640)
+...+.+|.+|...|...+|+.+|.++........ ..|...-+++...+-.
T Consensus 920 ~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~ 999 (1480)
T KOG4521|consen 920 PVIRFMLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHA 999 (1480)
T ss_pred HHHHHhhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccH
Confidence 55677888888888999999999888764322110 1122223344445555
Q ss_pred HHHHHHHHHHHHhCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHcCCH
Q 006562 466 VEAIQDLSKALEFEPNS----ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK---SAYTYLGLALSSIGEY 533 (640)
Q Consensus 466 ~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~la~~~~~~g~~ 533 (640)
+.+++....|++.-|.+ +.....+-..+...|.+-+|...+- .+|+.. ..+..+..+++..|++
T Consensus 1000 E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~----~npdserrrdcLRqlvivLfecg~l 1070 (1480)
T KOG4521|consen 1000 EEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAIL----RNPDSERRRDCLRQLVIVLFECGEL 1070 (1480)
T ss_pred HHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHH----cCCcHHHHHHHHHHHHHHHHhccch
Confidence 66666666666554433 2233333444455566666554332 234321 3344445555555554
No 460
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=44.70 E-value=81 Score=27.08 Aligned_cols=60 Identities=13% Similarity=-0.085 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH-ccc------Cch--hHHHhHHHHHHhhhcHHHHHHHHHHHHH
Q 006562 38 TARIELAKLCSLRNWSKAIRILDSLL-AQS------YEI--QDICNRAFCYSQLELHKHVIRDCDKALQ 97 (640)
Q Consensus 38 ~~~~~~~~~~~~~~y~~Ai~~y~~ai-~~~------~~~--~~~~~~A~~~~~~g~~~~Ai~~~~~al~ 97 (640)
..+......+..|+.+.|+..+.-+- ++. |-. ..-.++|..++..|+|.+|...+..++.
T Consensus 77 ~ai~~a~~~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 77 AAIKTANELLKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 33355558899999999999999872 222 211 1246899999999999999999988875
No 461
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=44.56 E-value=5.3e+02 Score=30.16 Aligned_cols=18 Identities=11% Similarity=-0.184 Sum_probs=13.8
Q ss_pred HHHHhhhcHHHHHHHHHH
Q 006562 77 FCYSQLELHKHVIRDCDK 94 (640)
Q Consensus 77 ~~~~~~g~~~~Ai~~~~~ 94 (640)
..++..++|.+|...+++
T Consensus 685 r~~l~~~~y~~AF~~~Rk 702 (1265)
T KOG1920|consen 685 RTLLDRLRYKEAFEVMRK 702 (1265)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 467777888888888765
No 462
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=44.10 E-value=3e+02 Score=26.38 Aligned_cols=134 Identities=11% Similarity=-0.002 Sum_probs=68.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCC--CHHHHHHHHHHH---HHccCHH----HHHHHHHHHHHhCCCcHHHHHHHHHH
Q 006562 388 GIAQVNEGKYASAISIFDQILKEDPM--YPEALIGRGTAR---AFQRELE----AAISDFTEAIQSNPSAGEAWKRRGQA 458 (640)
Q Consensus 388 a~~~~~~g~~~~A~~~~~~~l~~~~~--~~~~~~~la~~~---~~~g~~~----~A~~~~~~al~~~p~~~~~~~~la~~ 458 (640)
...++..++|++=-..+.+..+...+ ..+..+..+... ....... .-...++.-++..|++..++..+|..
T Consensus 7 ir~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~~ 86 (277)
T PF13226_consen 7 IRELLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGMY 86 (277)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 45667778888877777777653322 111112222222 1221111 24555566667778777777777766
Q ss_pred HHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Q 006562 459 RAALGESVEAIQDLSKALEFEP-NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYK 534 (640)
Q Consensus 459 ~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~ 534 (640)
+....=-- +...... -...-+..... -.+.|...+.+++.++|....+...+-.+-...|..+
T Consensus 87 ~~~~Aw~~-------RG~~~A~~V~~~~W~~~~~------~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fgeP~ 150 (277)
T PF13226_consen 87 WVHRAWDI-------RGSGYASTVTEAQWLGAHQ------ACDQAVAALLKAIELSPRPVAAAIGMINISAYFGEPD 150 (277)
T ss_pred HHHHHHHH-------HccchhcccCHHHHHHHHH------HHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCCch
Confidence 55421100 0000000 01112221111 2366777777778888777777776666666666554
No 463
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=44.02 E-value=93 Score=27.82 Aligned_cols=32 Identities=22% Similarity=0.134 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 006562 415 PEALIGRGTARAFQRELEAAISDFTEAIQSNP 446 (640)
Q Consensus 415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 446 (640)
+.++..++.++...|+.++|.....++....|
T Consensus 144 ~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 144 PNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 44444444444444444444444444444444
No 464
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=43.91 E-value=63 Score=18.54 Aligned_cols=29 Identities=24% Similarity=0.285 Sum_probs=22.3
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHc
Q 006562 88 VIRDCDKALQLDPTLLQAYILKGCAFSAL 116 (640)
Q Consensus 88 Ai~~~~~al~~~P~~~~a~~~~g~~y~~~ 116 (640)
.+..+..+|..+|.+..++..+-.+...+
T Consensus 2 El~~~~~~l~~~pknys~W~yR~~ll~~l 30 (31)
T PF01239_consen 2 ELEFTKKALEKDPKNYSAWNYRRWLLKQL 30 (31)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcccccHHHHHHHHHHHc
Confidence 45678899999999999888776655443
No 465
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=43.40 E-value=43 Score=23.92 Aligned_cols=25 Identities=8% Similarity=0.052 Sum_probs=12.8
Q ss_pred HhHHHHHHhhhcHHHHHHHHHHHHH
Q 006562 73 CNRAFCYSQLELHKHVIRDCDKALQ 97 (640)
Q Consensus 73 ~~~A~~~~~~g~~~~Ai~~~~~al~ 97 (640)
.++|.-+-+.|+|++|+..|..+++
T Consensus 9 ~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 9 IKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3344444455566666555554443
No 466
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=43.14 E-value=3e+02 Score=26.72 Aligned_cols=95 Identities=8% Similarity=-0.071 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHH--HHhCCCcHHHHH
Q 006562 451 AWKRRGQARAALGESVEAIQDLSKALEFEPNS-------ADILHERGIVNFKFKDFNAAVEDLSAC--VKLDKENKSAYT 521 (640)
Q Consensus 451 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~~~~~~A~~~~~~a--l~~~~~~~~~~~ 521 (640)
....+|.+|...++|..|...+.-.-.-.... ...+..+|.+|...++..+|..+..++ +..+..++....
T Consensus 105 irl~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~Lqi 184 (399)
T KOG1497|consen 105 IRLHLASIYEKEQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQLQI 184 (399)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHHHHH
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHc
Q 006562 522 YLGLALSS----IGEYKKAEEAHLKAIQ 545 (640)
Q Consensus 522 ~la~~~~~----~g~~~~A~~~~~~a~~ 545 (640)
.+-.+|.+ .++|-+|...|.+...
T Consensus 185 e~kvc~ARvlD~krkFlEAAqrYyels~ 212 (399)
T KOG1497|consen 185 EYKVCYARVLDYKRKFLEAAQRYYELSQ 212 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 467
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=42.28 E-value=84 Score=22.85 Aligned_cols=18 Identities=17% Similarity=0.268 Sum_probs=13.2
Q ss_pred hcCCHHHHHHHHHHHHcc
Q 006562 48 SLRNWSKAIRILDSLLAQ 65 (640)
Q Consensus 48 ~~~~y~~Ai~~y~~ai~~ 65 (640)
..|+|++|+.+|..|++.
T Consensus 18 ~~g~~~~Al~~Y~~a~e~ 35 (75)
T cd02656 18 EDGNYEEALELYKEALDY 35 (75)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 448888888888887644
No 468
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=42.01 E-value=68 Score=18.38 Aligned_cols=22 Identities=14% Similarity=0.273 Sum_probs=9.7
Q ss_pred HHHHHHHHhcCHHHHHHHHHHH
Q 006562 556 HLTQFYQDLANSEKALECLQQV 577 (640)
Q Consensus 556 ~la~~~~~~g~~~~A~~~~~~a 577 (640)
.+...+.+.|+++.|..+++..
T Consensus 6 ~ll~a~~~~g~~~~a~~~~~~M 27 (34)
T PF13812_consen 6 ALLRACAKAGDPDAALQLFDEM 27 (34)
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3344444444444444444443
No 469
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=41.85 E-value=3.8e+02 Score=27.02 Aligned_cols=54 Identities=19% Similarity=-0.010 Sum_probs=33.9
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCc-----HHHHHHHHHH--HHHcCCHHHHHHHHHH
Q 006562 421 RGTARAFQRELEAAISDFTEAIQSNPSA-----GEAWKRRGQA--RAALGESVEAIQDLSK 474 (640)
Q Consensus 421 la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~--~~~~~~~~~A~~~~~~ 474 (640)
.+...+..++|..|...|..+....+.. ...+..++.+ ++..-++++|.+.+++
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 4556777788888888888887664321 2233344433 3455677778777765
No 470
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=41.77 E-value=1.6e+02 Score=23.96 Aligned_cols=34 Identities=21% Similarity=0.307 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHH----HHhCCCCh
Q 006562 552 EAWGHLTQFYQDLANSEKALECLQQV----LYIDKRFS 585 (640)
Q Consensus 552 ~~~~~la~~~~~~g~~~~A~~~~~~a----l~~~~~~~ 585 (640)
....++|..+..+|+.+-.+++++-+ +.+-|..+
T Consensus 51 isCHNLA~FWR~~gd~~yELkYLqlASE~VltLiPQCp 88 (140)
T PF10952_consen 51 ISCHNLADFWRSQGDSDYELKYLQLASEKVLTLIPQCP 88 (140)
T ss_pred HHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHhccCCC
Confidence 34568899999999999999988755 44555443
No 471
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=41.58 E-value=1.6e+02 Score=24.00 Aligned_cols=27 Identities=15% Similarity=0.031 Sum_probs=20.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHh
Q 006562 384 RLSRGIAQVNEGKYASAISIFDQILKE 410 (640)
Q Consensus 384 ~~~~a~~~~~~g~~~~A~~~~~~~l~~ 410 (640)
+..+|...++.+++-.++-.|++++..
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~ 30 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSL 30 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHH
Confidence 456777888888888888888887754
No 472
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=41.24 E-value=8.9 Score=40.74 Aligned_cols=96 Identities=21% Similarity=0.209 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHH--HHhCCC-cHHHHH
Q 006562 380 SVDFRLSRGIAQVNEGKYASAISIFDQILK--EDPM-YPEALIGRGTARAFQRELEAAISDFTEA--IQSNPS-AGEAWK 453 (640)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~--~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a--l~~~p~-~~~~~~ 453 (640)
....++.-+..++..|++..|..++.++-. +.+. ........|.+....|+++.|+..+... ..+.+. ....+.
T Consensus 23 ~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~~~~~~~~~~ 102 (536)
T PF04348_consen 23 RAQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDLWQLPPEQQARYHQ 102 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCcccCCHHHHHHHHH
Confidence 344555566666667777777766665541 2222 2344455566666666666666666531 111111 122334
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH
Q 006562 454 RRGQARAALGESVEAIQDLSKA 475 (640)
Q Consensus 454 ~la~~~~~~~~~~~A~~~~~~a 475 (640)
..+.++...|++-+|...+-.+
T Consensus 103 l~A~a~~~~~~~l~Aa~~~i~l 124 (536)
T PF04348_consen 103 LRAQAYEQQGDPLAAARERIAL 124 (536)
T ss_dssp ----------------------
T ss_pred HHHHHHHhcCCHHHHHHHHHHH
Confidence 4555666666665555544433
No 473
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=40.87 E-value=45 Score=24.52 Aligned_cols=25 Identities=16% Similarity=-0.065 Sum_probs=14.1
Q ss_pred HhHHHHHHhhhcHHHHHHHHHHHHH
Q 006562 73 CNRAFCYSQLELHKHVIRDCDKALQ 97 (640)
Q Consensus 73 ~~~A~~~~~~g~~~~Ai~~~~~al~ 97 (640)
..+|.-+-+.|+|++|+..|..+|+
T Consensus 10 a~~Ave~D~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 10 ARLAVQRDQEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3344444555666666666666555
No 474
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=40.60 E-value=49 Score=30.46 Aligned_cols=20 Identities=10% Similarity=0.032 Sum_probs=11.5
Q ss_pred HHccCHHHHHHHHHHHHHhC
Q 006562 426 AFQRELEAAISDFTEAIQSN 445 (640)
Q Consensus 426 ~~~g~~~~A~~~~~~al~~~ 445 (640)
+..|+++.|+++..-+++.+
T Consensus 94 ~D~Gd~~~AL~ia~yAI~~~ 113 (230)
T PHA02537 94 FDIGDFDGALEIAEYALEHG 113 (230)
T ss_pred eeccCHHHHHHHHHHHHHcC
Confidence 34566666666666666544
No 475
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=40.12 E-value=23 Score=25.93 Aligned_cols=19 Identities=21% Similarity=0.340 Sum_probs=15.0
Q ss_pred HhcCCHHHHHHHHHHHHcc
Q 006562 47 CSLRNWSKAIRILDSLLAQ 65 (640)
Q Consensus 47 ~~~~~y~~Ai~~y~~ai~~ 65 (640)
=..|+|++|+.+|.+||+.
T Consensus 17 D~~g~y~eA~~~Y~~aie~ 35 (75)
T cd02678 17 DNAGNYEEALRLYQHALEY 35 (75)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 3678899999988888754
No 476
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=40.02 E-value=46 Score=24.52 Aligned_cols=18 Identities=11% Similarity=-0.147 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHcCCCch
Q 006562 86 KHVIRDCDKALQLDPTLL 103 (640)
Q Consensus 86 ~~Ai~~~~~al~~~P~~~ 103 (640)
.+||..+..+++..|+..
T Consensus 30 ~~aie~l~~~lk~e~d~~ 47 (77)
T cd02683 30 QEGIDLLMQVLKGTKDEA 47 (77)
T ss_pred HHHHHHHHHHHhhCCCHH
Confidence 333444444455555443
No 477
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=39.78 E-value=9.6 Score=40.47 Aligned_cols=94 Identities=19% Similarity=0.104 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHH--HhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHH--HHhCCC-CHHHHHHH
Q 006562 416 EALIGRGTARAFQRELEAAISDFTEAI--QSNPS-AGEAWKRRGQARAALGESVEAIQDLSKA--LEFEPN-SADILHER 489 (640)
Q Consensus 416 ~~~~~la~~~~~~g~~~~A~~~~~~al--~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~a--l~~~p~-~~~~~~~l 489 (640)
...+.-+..+...|++..|...+.+.- .+.|. ........|.+....|+++.|+..+... ..+.+. ....+...
T Consensus 25 ~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~~~~~~~~~~l~ 104 (536)
T PF04348_consen 25 QLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDLWQLPPEQQARYHQLR 104 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCcccCCHHHHHHHHHHH
Confidence 344445566667777777777766654 12222 2334445566666677777777766531 111111 12344455
Q ss_pred HHHHHhcCCHHHHHHHHHHH
Q 006562 490 GIVNFKFKDFNAAVEDLSAC 509 (640)
Q Consensus 490 a~~~~~~~~~~~A~~~~~~a 509 (640)
+.++...|++-+|...+-.+
T Consensus 105 A~a~~~~~~~l~Aa~~~i~l 124 (536)
T PF04348_consen 105 AQAYEQQGDPLAAARERIAL 124 (536)
T ss_dssp --------------------
T ss_pred HHHHHhcCCHHHHHHHHHHH
Confidence 66666666666665554433
No 478
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=39.54 E-value=5.6e+02 Score=28.25 Aligned_cols=139 Identities=17% Similarity=0.075 Sum_probs=68.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHH--HHHHHHHHH
Q 006562 488 ERGIVNFKFKDFNAAVEDLSACVKLDKENK----SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE--AWGHLTQFY 561 (640)
Q Consensus 488 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~~~~la~~~ 561 (640)
..|..+...|+-++|..+.++++... ++ .-.+.++..|...|+..--.+.+.-++..-.++.. +-..+|-++
T Consensus 506 ~vGiaL~~ygrqe~Ad~lI~el~~dk--dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD~nDDVrRaAVialGFVl 583 (929)
T KOG2062|consen 506 AVGIALVVYGRQEDADPLIKELLRDK--DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVL 583 (929)
T ss_pred HHhHHHHHhhhhhhhHHHHHHHhcCC--chhhhhhhHHHHHHHHhccCchhhHHHhhcccccccchHHHHHHHHHheeeE
Confidence 34566667777778888887776543 32 23456777777777765444444333332222222 222233222
Q ss_pred HHhcCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCH---HHHHHHHHHHHHc
Q 006562 562 QDLANSEKALECLQQVLYIDKRF--SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI---ECLYLRASCYHAI 632 (640)
Q Consensus 562 ~~~g~~~~A~~~~~~al~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~ 632 (640)
..+++.......-.-+....+ .-+-..+|.++.-.|. .+|+..++.... +|.+. .++..+|.+..++
T Consensus 584 --~~dp~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~-D~~~fVRQgAlIa~amIm~Q~ 655 (929)
T KOG2062|consen 584 --FRDPEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTS-DPVDFVRQGALIALAMIMIQQ 655 (929)
T ss_pred --ecChhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc-ChHHHHHHHHHHHHHHHHHhc
Confidence 334554444444333222111 1133445555555554 456666666555 55433 3445555555444
No 479
>PRK12798 chemotaxis protein; Reviewed
Probab=39.31 E-value=4.3e+02 Score=26.88 Aligned_cols=197 Identities=19% Similarity=0.089 Sum_probs=128.5
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-CCCCHHHHHHHHH-HHHHccCHHHHHHHHHHHHHhCCCcH---HHHHH
Q 006562 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKE-DPMYPEALIGRGT-ARAFQRELEAAISDFTEAIQSNPSAG---EAWKR 454 (640)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~ 454 (640)
+.+.-+..|...+-.|+-.++.+.+..+-.. -|...-.+..|.. ..+...+...|+..|+.+--..|... -++..
T Consensus 111 ~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRR 190 (421)
T PRK12798 111 NFDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRR 190 (421)
T ss_pred hhhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHH
Confidence 5666677788888899999999888765332 1222333333333 33455689999999999988888752 24444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHh-CCC-cHHHHHHHHHHHHH
Q 006562 455 RGQARAALGESVEAIQDLSKALEFEPNSADI---LHERGIVNFKFKDFNAAVEDLSACVKL-DKE-NKSAYTYLGLALSS 529 (640)
Q Consensus 455 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~~~~~~A~~~~~~al~~-~~~-~~~~~~~la~~~~~ 529 (640)
--.+....|+.+++..+-.+.+..+..++.+ +...+......++-. -...+...+.. +|. ...+|..++..-.-
T Consensus 191 si~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~-~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali 269 (421)
T PRK12798 191 SLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEI-RDARLVEILSFMDPERQRELYLRIARAALI 269 (421)
T ss_pred hhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccc-cHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Confidence 4455578899999998888888887766543 333344444444222 22335555554 332 25678888999999
Q ss_pred cCCHHHHHHHHHHHHccCcc----cHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 006562 530 IGEYKKAEEAHLKAIQLDRN----FLEAWGHLTQFYQDLANSEKALECLQQV 577 (640)
Q Consensus 530 ~g~~~~A~~~~~~a~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~a 577 (640)
.|+.+-|...-.++..+... ...+.++.+....-..+.++++..+...
T Consensus 270 ~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I 321 (421)
T PRK12798 270 DGKTELARFASERALKLADPDSADAARARLYRGAALVASDDAESALEELSQI 321 (421)
T ss_pred cCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcC
Confidence 99999999999998887532 2445555555555566777777766544
No 480
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=37.95 E-value=3.7e+02 Score=25.74 Aligned_cols=74 Identities=15% Similarity=0.025 Sum_probs=43.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHH---HHhcCCH----HHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 006562 456 GQARAALGESVEAIQDLSKALEFEPN--SADILHERGIV---NFKFKDF----NAAVEDLSACVKLDKENKSAYTYLGLA 526 (640)
Q Consensus 456 a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~---~~~~~~~----~~A~~~~~~al~~~~~~~~~~~~la~~ 526 (640)
...+...++|++--..+.+......+ ..+..+..+.. ....... ..-...++.-++..|++..++..+|..
T Consensus 7 ir~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~~ 86 (277)
T PF13226_consen 7 IRELLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGMY 86 (277)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 34566778888888888777654322 11111222221 2222211 135666777778889888888888887
Q ss_pred HHH
Q 006562 527 LSS 529 (640)
Q Consensus 527 ~~~ 529 (640)
+..
T Consensus 87 ~~~ 89 (277)
T PF13226_consen 87 WVH 89 (277)
T ss_pred HHH
Confidence 764
No 481
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=37.77 E-value=2.7e+02 Score=29.83 Aligned_cols=79 Identities=15% Similarity=0.046 Sum_probs=51.7
Q ss_pred hcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHH
Q 006562 495 KFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECL 574 (640)
Q Consensus 495 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 574 (640)
+....+.+....+.-+.-........+..+..+-..+..+.|-.+|++.+..+|+ ..++..+.-+.+.|-...|...+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 97 (578)
T PRK15490 20 QEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLIL 97 (578)
T ss_pred HHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHH
Confidence 3344555555555444433444555566677777777778888888888777776 56667777777777777777766
Q ss_pred H
Q 006562 575 Q 575 (640)
Q Consensus 575 ~ 575 (640)
+
T Consensus 98 ~ 98 (578)
T PRK15490 98 K 98 (578)
T ss_pred H
Confidence 6
No 482
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=37.50 E-value=2.6e+02 Score=24.76 Aligned_cols=42 Identities=10% Similarity=0.118 Sum_probs=30.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Q 006562 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQR 429 (640)
Q Consensus 387 ~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g 429 (640)
...+++..|.|++|.+.+++... +|++......|..+-....
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKD 158 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHccc
Confidence 35578899999999999999988 7776655555555544433
No 483
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=37.34 E-value=2.4e+02 Score=30.15 Aligned_cols=68 Identities=7% Similarity=-0.002 Sum_probs=52.5
Q ss_pred HhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 006562 370 VTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFT 439 (640)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 439 (640)
++.-......+....+..|..+-..+..+.|-.+|+..+..+|+ ..++..+.-+.+.|-...|...+.
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (578)
T PRK15490 31 IDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILK 98 (578)
T ss_pred HHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHH
Confidence 44445556666777788888888888888888888888888887 667777888888887777777776
No 484
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=37.33 E-value=3.1e+02 Score=24.69 Aligned_cols=65 Identities=14% Similarity=0.084 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHccCHHHHHHHHHHHHHhCC
Q 006562 382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGT-ARAFQRELEAAISDFTEAIQSNP 446 (640)
Q Consensus 382 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p 446 (640)
..+..+-......||++.|-..|--+++..+-+......+|. ++...+.-....++++......|
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~~y~ 107 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLISFYP 107 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHHHHH
Confidence 344455566778899999999999999887777766666665 44444444443455555544433
No 485
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=36.77 E-value=71 Score=18.65 Aligned_cols=27 Identities=22% Similarity=0.155 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHc----CCHHHHHHHHHHHH
Q 006562 104 QAYILKGCAFSAL----GRKEEALSVWEKGY 130 (640)
Q Consensus 104 ~a~~~~g~~y~~~----g~~~~A~~~~~~al 130 (640)
.+.+.+|..|..- .+.++|...|++|-
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa 32 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAA 32 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHH
Confidence 5678888888653 37899999999983
No 486
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=35.66 E-value=4.3e+02 Score=25.77 Aligned_cols=28 Identities=14% Similarity=-0.021 Sum_probs=14.5
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 006562 411 DPMYPEALIGRGTARAFQRELEAAISDF 438 (640)
Q Consensus 411 ~~~~~~~~~~la~~~~~~g~~~~A~~~~ 438 (640)
.|+..++++..|...+..|+|..|-.++
T Consensus 125 ~~e~i~~lykyakfqyeCGNY~gAs~yL 152 (432)
T KOG2758|consen 125 TPERIETLYKYAKFQYECGNYSGASDYL 152 (432)
T ss_pred CHHHHHHHHHHHHHHHhccCcccHHHHH
Confidence 3444455555555555555555554443
No 487
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=35.47 E-value=1.5e+02 Score=29.91 Aligned_cols=26 Identities=12% Similarity=-0.080 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH
Q 006562 554 WGHLTQFYQDLANSEKALECLQQVLY 579 (640)
Q Consensus 554 ~~~la~~~~~~g~~~~A~~~~~~al~ 579 (640)
+..-|.+.+.+|+-++|.++++.+..
T Consensus 270 ~LLQGV~~yHqg~~deAye~le~a~~ 295 (568)
T KOG2561|consen 270 ELLQGVVAYHQGQRDEAYEALESAHA 295 (568)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 34557777778888888888877754
No 488
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=34.98 E-value=6.4e+02 Score=27.61 Aligned_cols=212 Identities=16% Similarity=0.048 Sum_probs=0.0
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhc
Q 006562 423 TARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS------ADILHERGIVNFKF 496 (640)
Q Consensus 423 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~ 496 (640)
.++...|+|+.|+.++-+ .+.+..--..+|.++...|-....-..-...+...+.+ +........ .+..
T Consensus 266 ~~LlLtgqFE~AI~~L~~----~~~~~~dAVH~AIaL~~~gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~-~F~~ 340 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR----NEFNRVDAVHFAIALAYYGLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTR-SFEI 340 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT------T-HHHHHHHHHHHHHTT------------------------HHHHHHHHHH-TTTT
T ss_pred HHHHHHhhHHHHHHHHHh----hccCcccHHHHHHHHHHcCCCCCCCccccceeeecCCCCCCcCHHHHHHHHHH-HHhc
Q ss_pred CCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHcCCHHHHH-----------HHHHH------HHccCcccHHHHHHH
Q 006562 497 KDFNAAVEDLSACVKLDK--ENKSAYTYLGLALSSIGEYKKAE-----------EAHLK------AIQLDRNFLEAWGHL 557 (640)
Q Consensus 497 ~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~g~~~~A~-----------~~~~~------a~~~~~~~~~~~~~l 557 (640)
.+..+|+.+|--+-.... .....+..+.......++++.=+ -.+++ ..........+....
T Consensus 341 td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~i~~~~ 420 (613)
T PF04097_consen 341 TDPREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLREIIEQA 420 (613)
T ss_dssp T-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccCCCCcHHHHHHHHHHH
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCC-----------HHHHHHHHHHhhc-------cCCCCH
Q 006562 558 TQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQ-----------HKKAIKDLSSGLG-------IDPSNI 619 (640)
Q Consensus 558 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~-----------~~~A~~~~~~al~-------~~p~~~ 619 (640)
|.-....|++++|+.+|.-+-+.+.--...-..++.+...... ...|....+..-. ..+...
T Consensus 421 A~~~e~~g~~~dAi~Ly~La~~~d~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~~~~~~~ 500 (613)
T PF04097_consen 421 AREAEERGRFEDAILLYHLAEEYDKVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHISSKVSRKNR 500 (613)
T ss_dssp HHHHHHCT-HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHHTTS-HHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchHhhccHHHH
Q ss_pred HHHHHHHHH-----HHHcCCccccc
Q 006562 620 ECLYLRASC-----YHAIGEYREAV 639 (640)
Q Consensus 620 ~~~~~la~~-----~~~~g~~~~Al 639 (640)
.+...|-.+ +...|++++|+
T Consensus 501 ~t~~~Ll~L~~ff~~~~~g~~~~AL 525 (613)
T PF04097_consen 501 ETFQLLLDLAEFFDLYHAGQYEQAL 525 (613)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHH
No 489
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=33.91 E-value=76 Score=25.84 Aligned_cols=33 Identities=18% Similarity=0.117 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCC
Q 006562 104 QAYILKGCAFSALGRKEEALSVWEKGYEHALHQ 136 (640)
Q Consensus 104 ~a~~~~g~~y~~~g~~~~A~~~~~~al~~~~~~ 136 (640)
--.+.+|..+...|++++|..+|-+|+...|..
T Consensus 64 l~qV~lGE~L~~~G~~~~aa~hf~nAl~V~~qP 96 (121)
T PF02064_consen 64 LQQVQLGEQLLAQGDYEEAAEHFYNALKVCPQP 96 (121)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHTSSSH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCH
Confidence 356778999999999999999999999988754
No 490
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=33.49 E-value=3.8e+02 Score=27.31 Aligned_cols=95 Identities=13% Similarity=0.019 Sum_probs=58.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHh-----------CCCCHHHHHHHHHHHHHccCH----------HHHHHHHHHHH
Q 006562 384 RLSRGIAQVNEGKYASAISIFDQILKE-----------DPMYPEALIGRGTARAFQREL----------EAAISDFTEAI 442 (640)
Q Consensus 384 ~~~~a~~~~~~g~~~~A~~~~~~~l~~-----------~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al 442 (640)
+..+|.+++....|.+|+.++-.+-+. -.+.+..-..+.+||+...+. ..|.+.|.++.
T Consensus 166 ~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~sy 245 (568)
T KOG2561|consen 166 LHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFERSY 245 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhhhh
Confidence 456778888888999988877655332 233344445566777776542 23344443332
Q ss_pred H--------h-CCCcH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006562 443 Q--------S-NPSAG------EAWKRRGQARAALGESVEAIQDLSKALEF 478 (640)
Q Consensus 443 ~--------~-~p~~~------~~~~~la~~~~~~~~~~~A~~~~~~al~~ 478 (640)
- + .+..+ ..+...|.+.+..|+-++|.++++.+...
T Consensus 246 Genl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~ 296 (568)
T KOG2561|consen 246 GENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAK 296 (568)
T ss_pred hhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 1 1 12222 23455688888999999999999887653
No 491
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=33.31 E-value=4.7e+02 Score=25.52 Aligned_cols=185 Identities=12% Similarity=0.031 Sum_probs=102.7
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006562 434 AISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFE--PN--SADILHERGIVNFKFKDFNAAVEDLSAC 509 (640)
Q Consensus 434 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~--~~~~~~~la~~~~~~~~~~~A~~~~~~a 509 (640)
-+.++.+-....|+..++++..|...+..|+|..|-.++-....+. |+ ...+.+..-..-.-..+|+.|++.+.+.
T Consensus 114 ~l~~L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~A~edL~rL 193 (432)
T KOG2758|consen 114 NLQHLQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDGALEDLTRL 193 (432)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3445555555667788899999999999999999988765544443 22 2233333333344567899999988887
Q ss_pred HHhCCCc-----HHHHHH----HHHHHHHcCCHHHHHHHHHHHHccCcc--------cHHHHHHHHHHHHHh-cCHHHHH
Q 006562 510 VKLDKEN-----KSAYTY----LGLALSSIGEYKKAEEAHLKAIQLDRN--------FLEAWGHLTQFYQDL-ANSEKAL 571 (640)
Q Consensus 510 l~~~~~~-----~~~~~~----la~~~~~~g~~~~A~~~~~~a~~~~~~--------~~~~~~~la~~~~~~-g~~~~A~ 571 (640)
-+.-.+. ...+.. +-+.++-.=++.++...+-.++-..|. .|.....++.+..-. .....++
T Consensus 194 re~IDs~~f~~~~~~l~qRtWLiHWslfv~fnhpkgrd~iid~fly~p~YLNaIQt~cPhllRYLatAvvtnk~~rr~~l 273 (432)
T KOG2758|consen 194 REYIDSKSFSTSAQQLQQRTWLIHWSLFVFFNHPKGRDTIIDMFLYQPPYLNAIQTSCPHLLRYLATAVVTNKRRRRNRL 273 (432)
T ss_pred HHHHcccccccHHHHHHHHHHHHHHHHHhhccCCChhhHHHHHHccCHHHHHHHHhhCHHHHHHHHHHhhcchHhhHHHH
Confidence 6542221 111111 112222222333333333333332221 244445555544433 5566677
Q ss_pred HHHHHHHHhCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCC
Q 006562 572 ECLQQVLYIDK-RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN 618 (640)
Q Consensus 572 ~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 618 (640)
+-+-++++... ...+.....-.+++-.=+++.|...++++-+.--++
T Consensus 274 kdlvkVIqqE~ysYkDPiteFl~clyvn~DFdgAq~kl~eCeeVl~nD 321 (432)
T KOG2758|consen 274 KDLVKVIQQESYSYKDPITEFLECLYVNYDFDGAQKKLRECEEVLVND 321 (432)
T ss_pred HHHHHHHHHhccccCCcHHHHHHHHhhccchHHHHHHHHHHHHHHhcc
Confidence 77777776543 111222233445556678999999888876654443
No 492
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=33.19 E-value=99 Score=18.46 Aligned_cols=28 Identities=21% Similarity=0.141 Sum_probs=18.2
Q ss_pred hHHHHHHH--HHHHHcC-----CHHHHHHHHHHHH
Q 006562 103 LQAYILKG--CAFSALG-----RKEEALSVWEKGY 130 (640)
Q Consensus 103 ~~a~~~~g--~~y~~~g-----~~~~A~~~~~~al 130 (640)
+++.+.+| ..|..-. ++++|+..|++|-
T Consensus 1 a~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa 35 (39)
T PF08238_consen 1 AEAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAA 35 (39)
T ss_dssp HHHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHhhhhccCCccccccchHHHHHHHH
Confidence 35677777 5444433 4678888888873
No 493
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=33.03 E-value=2.1e+02 Score=22.68 Aligned_cols=43 Identities=26% Similarity=0.303 Sum_probs=21.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHcC
Q 006562 591 RGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIG 633 (640)
Q Consensus 591 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 633 (640)
.|.+....|++..|.+.+.++-+..+..+-.+..-+++-..+|
T Consensus 65 ~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~g 107 (108)
T PF07219_consen 65 RGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQG 107 (108)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Confidence 3445555566666666666665444433333333444444444
No 494
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=32.87 E-value=88 Score=23.21 Aligned_cols=33 Identities=36% Similarity=0.553 Sum_probs=22.6
Q ss_pred cHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006562 84 LHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYE 131 (640)
Q Consensus 84 ~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~~~~A~~~~~~al~ 131 (640)
-|+.|....++||..| ..|+.++|+..|++++.
T Consensus 4 ~~~~A~~~I~kaL~~d---------------E~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 4 YYKQAFEEISKALRAD---------------EWGDKEQALAHYRKGLR 36 (79)
T ss_pred HHHHHHHHHHHHhhhh---------------hcCCHHHHHHHHHHHHH
Confidence 4556666666665554 44788889998888853
No 495
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=32.73 E-value=53 Score=32.75 Aligned_cols=56 Identities=14% Similarity=0.115 Sum_probs=0.0
Q ss_pred HHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchH-------HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006562 71 DICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ-------AYILKGCAFSALGRKEEALSVWEKGY 130 (640)
Q Consensus 71 ~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~-------a~~~~g~~y~~~g~~~~A~~~~~~al 130 (640)
.+..+-+.+.-+|+ -+| ..+.++++|...- .-|..|-+|+.+|+|.+|++.|-.+|
T Consensus 237 sL~GLlR~H~lLgD-hQa---t~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~niL 299 (525)
T KOG3677|consen 237 SLLGLLRMHILLGD-HQA---TSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNIL 299 (525)
T ss_pred HHHHHHHHHHHhhh-hHh---hhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHHH
No 496
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=32.38 E-value=1.1e+02 Score=23.81 Aligned_cols=46 Identities=20% Similarity=0.171 Sum_probs=21.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHcccCchhHHHhHHHHHHhhhcHHHHHH
Q 006562 41 IELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIR 90 (640)
Q Consensus 41 ~~~~~~~~~~~y~~Ai~~y~~ai~~~~~~~~~~~~A~~~~~~g~~~~Ai~ 90 (640)
|.+..++.+|+|++|....+.. +.|....-.|.|-.++|...++..
T Consensus 44 IRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce~rlGl~s~l~~ 89 (115)
T TIGR02508 44 IRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCEWRLGLGSALES 89 (115)
T ss_pred HHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHHHhhccHHHHHH
Confidence 4455555666666665543332 222222333445555555544433
No 497
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=31.14 E-value=5.1e+02 Score=25.26 Aligned_cols=132 Identities=14% Similarity=0.046 Sum_probs=0.0
Q ss_pred cccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH---------------
Q 006562 378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAI--------------- 442 (640)
Q Consensus 378 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al--------------- 442 (640)
|...+..-.+-..+ ..+++.+.++.+++.+...|-..+.++..+.+....| ++.+.......+
T Consensus 97 ~p~ad~~~~~~~~~-~~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG-~~~~a~aI~~el~~fL~RlP~L~~L~F 174 (301)
T TIGR03362 97 PPPADRVADYQELL-AQADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLG-YAAVAQAIRDELAAFLERLPGLLELKF 174 (301)
T ss_pred CCCHHHHHHHHHHH-hCCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhCcChhhccc
Q ss_pred -----------------HhCC---------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHH
Q 006562 443 -----------------QSNP---------------SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSAD---ILH 487 (640)
Q Consensus 443 -----------------~~~p---------------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~ 487 (640)
...+ .+......-+......+..+.|+..++..+...+..-+ ...
T Consensus 175 ~DGtPFad~~T~~WL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf~~rL 254 (301)
T TIGR03362 175 SDGTPFADDETRAWLAQHATRSNAASVAPVAEVGEESDWEELREEARALAAEGGLEAALQRLQQRLAQAREPRERFHWRL 254 (301)
T ss_pred CCCCCCCCHHHHHHHHhcccccccccccccccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCCChHHHHHHHH
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 006562 488 ERGIVNFKFKDFNAAVEDLSACVK 511 (640)
Q Consensus 488 ~la~~~~~~~~~~~A~~~~~~al~ 511 (640)
.++.++...|..+-|...|....+
T Consensus 255 ~~A~l~~~~g~~~lA~~ll~~L~~ 278 (301)
T TIGR03362 255 LLARLLEQAGKAELAQQLYAALDQ 278 (301)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
No 498
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=31.07 E-value=3e+02 Score=22.62 Aligned_cols=41 Identities=22% Similarity=0.160 Sum_probs=26.5
Q ss_pred HHHHHHHHHHh--CCCChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006562 570 ALECLQQVLYI--DKRFSKAYHLRGLLLHGLGQHKKAIKDLSS 610 (640)
Q Consensus 570 A~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 610 (640)
+.++|.-+... ....+..|...|..+...|++.+|.+.|+.
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 44455554433 334566677777778888888888877764
No 499
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=29.43 E-value=2.4e+02 Score=27.84 Aligned_cols=53 Identities=11% Similarity=0.186 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHcCCC---chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChH
Q 006562 86 KHVIRDCDKALQLDPT---LLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSA 138 (640)
Q Consensus 86 ~~Ai~~~~~al~~~P~---~~~a~~~~g~~y~~~g~~~~A~~~~~~al~~~~~~~~ 138 (640)
++.+..+...|+.-|+ +++.|+.++++....|.+++.+..|+.|+..+.....
T Consensus 120 eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPie 175 (353)
T PF15297_consen 120 EEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIE 175 (353)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHH
Confidence 4555566666777775 6779999999999999999999999999877665433
No 500
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=28.91 E-value=3.6e+02 Score=22.90 Aligned_cols=60 Identities=17% Similarity=0.211 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCCC---------chHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhccCChHHHHHHHh
Q 006562 85 HKHVIRDCDKALQLDPT---------LLQAYILKGCAFSALG-RKEEALSVWEKGYEHALHQSADLKQFLE 145 (640)
Q Consensus 85 ~~~Ai~~~~~al~~~P~---------~~~a~~~~g~~y~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~ 145 (640)
..+.+......+...|. ++.-.+.+|..+...| +.++|..+|-+|+...| +|.++..+++
T Consensus 63 ~~~~~~~~~~~~~~~p~p~d~~e~E~~Fl~eV~~GE~L~~~g~~~~ega~hf~nAl~Vc~-qP~~LL~iyq 132 (148)
T TIGR00985 63 QRQRIRPAAAGLAKAPDPTDPSEKEAFFLQEVQLGEELMAQGTNVDEGAVHFYNALKVYP-QPQQLLSIYQ 132 (148)
T ss_pred HHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCC-CHHHHHHHHH
Done!