Query 006562
Match_columns 640
No_of_seqs 971 out of 3645
Neff 10.9
Searched_HMMs 29240
Date Mon Mar 25 02:54:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006562.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006562hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w3b_A UDP-N-acetylglucosamine 100.0 2.2E-40 7.7E-45 338.5 48.0 381 44-634 7-388 (388)
2 1w3b_A UDP-N-acetylglucosamine 100.0 5.8E-37 2E-41 313.2 45.4 267 373-639 93-359 (388)
3 2gw1_A Mitochondrial precursor 100.0 1.4E-36 4.9E-41 322.5 42.8 457 42-628 12-492 (514)
4 2xpi_A Anaphase-promoting comp 100.0 6.8E-35 2.3E-39 315.7 44.8 261 378-638 302-569 (597)
5 3fp2_A TPR repeat-containing p 100.0 1.6E-34 5.4E-39 308.6 46.9 443 41-623 30-500 (537)
6 2y4t_A DNAJ homolog subfamily 100.0 6.9E-34 2.3E-38 296.5 44.5 364 44-639 34-445 (450)
7 3ieg_A DNAJ homolog subfamily 100.0 5.2E-33 1.8E-37 280.2 43.7 214 421-634 126-355 (359)
8 2y4t_A DNAJ homolog subfamily 100.0 7.6E-33 2.6E-37 288.6 41.9 338 52-633 8-377 (450)
9 2xpi_A Anaphase-promoting comp 100.0 2.4E-33 8.1E-38 303.6 37.9 259 372-630 330-595 (597)
10 3ieg_A DNAJ homolog subfamily 100.0 1E-31 3.4E-36 270.8 45.5 325 43-599 10-354 (359)
11 2gw1_A Mitochondrial precursor 100.0 4.7E-33 1.6E-37 295.4 34.5 261 378-639 183-469 (514)
12 3fp2_A TPR repeat-containing p 100.0 1E-32 3.5E-37 294.6 35.1 246 393-639 214-482 (537)
13 4g1t_A Interferon-induced prot 100.0 1.4E-30 4.9E-35 273.2 37.6 366 45-627 60-472 (472)
14 3hym_B Cell division cycle pro 100.0 3.9E-30 1.3E-34 256.0 35.4 249 387-635 62-321 (330)
15 4g1t_A Interferon-induced prot 100.0 1.8E-29 6.1E-34 264.8 35.1 262 369-640 160-451 (472)
16 1fch_A Peroxisomal targeting s 100.0 4.6E-30 1.6E-34 259.9 28.4 230 383-613 100-358 (368)
17 3hym_B Cell division cycle pro 100.0 3.2E-29 1.1E-33 249.4 31.2 266 374-639 15-290 (330)
18 4eqf_A PEX5-related protein; a 100.0 2.1E-29 7.3E-34 254.8 26.1 262 377-638 61-346 (365)
19 2h6f_A Protein farnesyltransfe 100.0 5.5E-29 1.9E-33 249.4 27.3 258 374-632 90-366 (382)
20 1fch_A Peroxisomal targeting s 100.0 1.1E-28 3.6E-33 249.8 29.9 258 381-639 64-350 (368)
21 3cv0_A Peroxisome targeting si 100.0 3.5E-28 1.2E-32 241.5 28.5 261 379-639 19-306 (327)
22 4eqf_A PEX5-related protein; a 100.0 1.5E-27 5.2E-32 241.1 27.4 169 381-549 133-313 (365)
23 3u4t_A TPR repeat-containing p 100.0 3.9E-27 1.3E-31 227.4 24.0 253 380-633 2-269 (272)
24 2h6f_A Protein farnesyltransfe 100.0 7.4E-27 2.5E-31 234.0 26.0 181 381-562 166-364 (382)
25 3cv0_A Peroxisome targeting si 100.0 1.5E-26 5.3E-31 229.6 28.3 197 382-578 90-313 (327)
26 3uq3_A Heat shock protein STI1 100.0 1.7E-26 5.7E-31 220.9 26.9 241 380-629 4-257 (258)
27 2xm6_A Protein corresponding t 100.0 7E-24 2.4E-28 223.0 47.5 357 38-619 40-437 (490)
28 2pl2_A Hypothetical conserved 99.9 3.2E-26 1.1E-30 212.4 24.3 199 412-611 2-211 (217)
29 2pl2_A Hypothetical conserved 99.9 4.7E-26 1.6E-30 211.3 23.9 200 378-578 2-212 (217)
30 2ooe_A Cleavage stimulation fa 99.9 1.9E-23 6.4E-28 222.0 41.7 207 432-638 255-482 (530)
31 2ooe_A Cleavage stimulation fa 99.9 5.7E-23 1.9E-27 218.3 43.4 220 398-617 255-495 (530)
32 2xm6_A Protein corresponding t 99.9 5.2E-23 1.8E-27 216.3 42.3 357 39-620 77-473 (490)
33 3mkr_A Coatomer subunit epsilo 99.9 4.8E-24 1.6E-28 206.8 30.5 217 383-608 67-288 (291)
34 3u4t_A TPR repeat-containing p 99.9 2.4E-24 8.1E-29 207.9 27.1 182 381-562 74-266 (272)
35 3mkr_A Coatomer subunit epsilo 99.9 1.5E-23 5.2E-28 203.3 28.1 253 374-638 26-284 (291)
36 3sf4_A G-protein-signaling mod 99.9 2.9E-24 1E-28 220.2 24.3 223 381-603 87-365 (406)
37 2q7f_A YRRB protein; TPR, prot 99.9 3.9E-24 1.4E-28 202.4 23.1 218 379-596 21-238 (243)
38 2q7f_A YRRB protein; TPR, prot 99.9 4.6E-24 1.6E-28 202.0 23.2 221 414-634 22-242 (243)
39 3uq3_A Heat shock protein STI1 99.9 1.2E-23 4E-28 201.0 26.1 217 414-639 4-227 (258)
40 1xnf_A Lipoprotein NLPI; TPR, 99.9 5.5E-24 1.9E-28 205.6 21.3 243 392-639 16-266 (275)
41 4a1s_A PINS, partner of inscut 99.9 3E-24 1E-28 220.7 18.8 262 378-639 45-363 (411)
42 3sf4_A G-protein-signaling mod 99.9 6.2E-24 2.1E-28 217.7 21.0 260 380-639 8-327 (406)
43 2vq2_A PILW, putative fimbrial 99.9 1.8E-22 6E-27 188.4 29.0 212 412-623 5-220 (225)
44 1ouv_A Conserved hypothetical 99.9 3.7E-22 1.3E-26 192.6 32.1 234 377-622 2-259 (273)
45 2ho1_A Type 4 fimbrial biogene 99.9 1.8E-22 6.1E-27 192.2 29.1 214 377-590 32-248 (252)
46 2ho1_A Type 4 fimbrial biogene 99.9 8E-23 2.7E-27 194.7 26.4 216 410-625 31-249 (252)
47 2vq2_A PILW, putative fimbrial 99.9 3.7E-22 1.3E-26 186.2 29.8 216 376-591 3-222 (225)
48 3ro2_A PINS homolog, G-protein 99.9 1.2E-23 4.3E-28 209.2 20.1 259 381-639 5-323 (338)
49 3vtx_A MAMA; tetratricopeptide 99.9 1.4E-22 4.9E-27 182.7 24.3 167 382-548 6-172 (184)
50 3vtx_A MAMA; tetratricopeptide 99.9 2.1E-22 7.3E-27 181.6 25.3 174 413-586 3-176 (184)
51 3e4b_A ALGK; tetratricopeptide 99.9 7.9E-23 2.7E-27 211.5 25.3 236 381-629 141-400 (452)
52 4abn_A Tetratricopeptide repea 99.9 5.7E-23 1.9E-27 214.0 23.4 216 395-611 82-318 (474)
53 1xnf_A Lipoprotein NLPI; TPR, 99.9 2.3E-22 7.9E-27 194.1 24.6 227 377-608 39-269 (275)
54 4abn_A Tetratricopeptide repea 99.9 6.4E-23 2.2E-27 213.6 21.9 210 429-639 82-312 (474)
55 4a1s_A PINS, partner of inscut 99.9 1.5E-22 5.1E-27 208.0 24.3 202 381-582 126-374 (411)
56 3ro2_A PINS homolog, G-protein 99.9 3.2E-22 1.1E-26 199.0 24.5 200 381-580 83-332 (338)
57 4i17_A Hypothetical protein; T 99.9 1.8E-21 6.2E-26 182.2 27.5 217 379-629 5-224 (228)
58 4i17_A Hypothetical protein; T 99.9 3.6E-21 1.2E-25 180.1 28.7 132 365-496 25-166 (228)
59 2ond_A Cleavage stimulation fa 99.9 2.7E-21 9.3E-26 189.8 27.8 222 398-619 33-275 (308)
60 1ouv_A Conserved hypothetical 99.9 1.8E-20 6.2E-25 180.7 31.1 217 411-639 2-242 (273)
61 2ond_A Cleavage stimulation fa 99.9 7.4E-21 2.5E-25 186.7 26.8 248 368-627 37-305 (308)
62 3nf1_A KLC 1, kinesin light ch 99.9 7.4E-22 2.5E-26 194.2 15.0 244 374-617 20-310 (311)
63 3dra_A Protein farnesyltransfe 99.9 1.1E-19 3.8E-24 174.4 28.5 240 389-628 40-302 (306)
64 4gyw_A UDP-N-acetylglucosamine 99.9 6E-21 2E-25 206.0 21.5 174 376-549 4-177 (723)
65 4gyw_A UDP-N-acetylglucosamine 99.9 8.4E-21 2.9E-25 204.9 22.4 173 410-582 4-176 (723)
66 3ulq_A Response regulator aspa 99.9 2E-20 6.9E-25 190.0 22.7 235 381-616 103-370 (383)
67 3e4b_A ALGK; tetratricopeptide 99.9 3.4E-20 1.1E-24 191.8 24.7 234 382-631 107-366 (452)
68 3qky_A Outer membrane assembly 99.9 4E-20 1.4E-24 176.9 22.5 209 376-601 10-248 (261)
69 3qky_A Outer membrane assembly 99.8 6.7E-20 2.3E-24 175.4 22.0 190 364-570 32-251 (261)
70 1xi4_A Clathrin heavy chain; a 99.8 2E-18 6.9E-23 189.0 35.3 237 379-639 1132-1375(1630)
71 3ulq_A Response regulator aspa 99.8 1.8E-20 6.2E-25 190.4 18.1 222 417-639 105-359 (383)
72 3q15_A PSP28, response regulat 99.8 4E-19 1.4E-23 180.0 23.1 234 381-615 101-366 (378)
73 3nf1_A KLC 1, kinesin light ch 99.8 2.4E-20 8.3E-25 183.3 13.1 229 411-639 23-298 (311)
74 1qqe_A Vesicular transport pro 99.8 1.6E-19 5.3E-24 175.6 18.7 220 396-629 32-284 (292)
75 2pzi_A Probable serine/threoni 99.8 2E-19 6.8E-24 195.6 21.2 188 375-566 388-583 (681)
76 2pzi_A Probable serine/threoni 99.8 1.2E-19 4.1E-24 197.3 19.2 188 409-600 388-583 (681)
77 3dss_A Geranylgeranyl transfer 99.8 2.6E-17 8.8E-22 158.6 31.0 241 389-629 37-319 (331)
78 1xi4_A Clathrin heavy chain; a 99.8 4.1E-17 1.4E-21 178.9 35.4 219 381-618 1195-1434(1630)
79 3urz_A Uncharacterized protein 99.8 1.1E-18 3.7E-23 160.3 20.0 184 380-582 3-188 (208)
80 3urz_A Uncharacterized protein 99.8 1.5E-18 5.2E-23 159.4 21.0 166 365-549 22-189 (208)
81 3as5_A MAMA; tetratricopeptide 99.8 1.9E-18 6.5E-23 155.4 20.9 169 381-549 8-176 (186)
82 4ga2_A E3 SUMO-protein ligase 99.8 5.9E-20 2E-24 158.9 10.1 146 489-634 3-149 (150)
83 3as5_A MAMA; tetratricopeptide 99.8 2.7E-18 9.1E-23 154.5 21.1 168 416-583 9-176 (186)
84 3dra_A Protein farnesyltransfe 99.8 1.6E-17 5.5E-22 159.4 27.2 226 369-594 55-302 (306)
85 1hz4_A MALT regulatory protein 99.8 7.6E-18 2.6E-22 170.3 25.4 259 381-639 14-313 (373)
86 4ga2_A E3 SUMO-protein ligase 99.8 1.3E-19 4.6E-24 156.6 10.6 145 455-599 3-148 (150)
87 1hz4_A MALT regulatory protein 99.8 9.4E-17 3.2E-21 162.3 32.6 230 382-618 94-353 (373)
88 3edt_B KLC 2, kinesin light ch 99.8 7.3E-19 2.5E-23 170.0 15.3 224 392-615 12-282 (283)
89 3q15_A PSP28, response regulat 99.8 5.4E-18 1.9E-22 171.6 21.9 222 417-639 103-356 (378)
90 1qqe_A Vesicular transport pro 99.8 2.4E-18 8.1E-23 167.3 18.3 214 382-595 38-284 (292)
91 2yhc_A BAMD, UPF0169 lipoprote 99.8 1E-17 3.5E-22 156.0 21.2 207 380-619 3-218 (225)
92 2yhc_A BAMD, UPF0169 lipoprote 99.8 2.1E-17 7.3E-22 153.8 21.8 189 364-585 21-218 (225)
93 3q7a_A Farnesyltransferase alp 99.8 1.2E-16 4.1E-21 154.5 25.9 239 390-628 63-346 (349)
94 1b89_A Protein (clathrin heavy 99.8 1.3E-18 4.6E-23 171.7 11.6 176 383-575 124-306 (449)
95 3edt_B KLC 2, kinesin light ch 99.8 3.3E-17 1.1E-21 158.3 19.9 231 334-581 13-282 (283)
96 1b89_A Protein (clathrin heavy 99.7 9.5E-19 3.3E-23 172.7 7.3 203 385-610 98-307 (449)
97 4gco_A Protein STI-1; structur 99.7 2.1E-17 7.2E-22 137.8 13.9 118 511-628 7-124 (126)
98 4gco_A Protein STI-1; structur 99.7 6.2E-17 2.1E-21 134.9 16.4 119 374-492 6-124 (126)
99 2r5s_A Uncharacterized protein 99.7 1.9E-17 6.5E-22 147.7 13.4 160 418-578 9-171 (176)
100 2r5s_A Uncharacterized protein 99.7 1.6E-17 5.3E-22 148.2 12.7 167 378-545 3-172 (176)
101 3qou_A Protein YBBN; thioredox 99.7 1.9E-16 6.5E-21 153.2 19.3 167 412-578 114-282 (287)
102 2ifu_A Gamma-SNAP; membrane fu 99.7 8.6E-17 3E-21 157.5 17.0 161 422-584 43-227 (307)
103 3qou_A Protein YBBN; thioredox 99.7 2.5E-16 8.7E-21 152.3 19.7 169 445-613 113-283 (287)
104 3dss_A Geranylgeranyl transfer 99.7 7.1E-15 2.4E-19 141.6 29.1 228 368-595 51-319 (331)
105 2vsy_A XCC0866; transferase, g 99.7 4.2E-16 1.4E-20 166.7 21.2 165 394-558 2-169 (568)
106 2vsy_A XCC0866; transferase, g 99.7 4.4E-16 1.5E-20 166.6 21.2 165 428-592 2-169 (568)
107 3q7a_A Farnesyltransferase alp 99.7 1.4E-15 4.9E-20 146.9 21.2 227 396-639 52-322 (349)
108 3gyz_A Chaperone protein IPGC; 99.7 6.2E-17 2.1E-21 138.9 10.3 116 504-619 23-138 (151)
109 4f3v_A ESX-1 secretion system 99.7 1.3E-16 4.6E-21 149.0 13.3 207 383-592 9-248 (282)
110 4e6h_A MRNA 3'-END-processing 99.7 8.2E-13 2.8E-17 140.9 43.7 223 398-620 326-576 (679)
111 2hr2_A Hypothetical protein; a 99.7 3E-16 1E-20 132.3 13.0 110 37-146 12-145 (159)
112 4f3v_A ESX-1 secretion system 99.7 1.6E-16 5.5E-21 148.5 12.1 206 418-626 10-248 (282)
113 3rjv_A Putative SEL1 repeat pr 99.7 6E-15 2E-19 135.6 22.2 174 434-615 5-198 (212)
114 3gyz_A Chaperone protein IPGC; 99.7 2.2E-16 7.6E-21 135.4 11.5 111 439-549 26-136 (151)
115 3rjv_A Putative SEL1 repeat pr 99.7 6.4E-15 2.2E-19 135.4 21.1 185 398-592 3-207 (212)
116 4e6h_A MRNA 3'-END-processing 99.7 1E-12 3.4E-17 140.2 40.8 207 432-638 326-560 (679)
117 2c2l_A CHIP, carboxy terminus 99.7 5E-16 1.7E-20 149.6 13.8 196 413-613 2-198 (281)
118 2c2l_A CHIP, carboxy terminus 99.7 6.3E-16 2.2E-20 148.9 13.4 198 378-580 1-199 (281)
119 2ifu_A Gamma-SNAP; membrane fu 99.6 8.2E-15 2.8E-19 143.3 20.8 162 386-549 41-226 (307)
120 1p5q_A FKBP52, FK506-binding p 99.6 3.2E-17 1.1E-21 162.2 3.6 152 428-579 126-293 (336)
121 1p5q_A FKBP52, FK506-binding p 99.6 1.3E-17 4.6E-22 165.0 0.1 153 461-613 125-293 (336)
122 2vgx_A Chaperone SYCD; alterna 99.6 5.9E-16 2E-20 133.2 10.2 116 505-620 9-124 (148)
123 2vgx_A Chaperone SYCD; alterna 99.6 1.7E-15 5.7E-20 130.3 11.5 113 404-516 10-122 (148)
124 2fo7_A Synthetic consensus TPR 99.6 3.6E-14 1.2E-18 119.7 19.6 133 383-515 3-135 (136)
125 2fo7_A Synthetic consensus TPR 99.6 4.6E-14 1.6E-18 119.0 19.4 132 417-548 3-134 (136)
126 1dce_A Protein (RAB geranylger 99.6 3.2E-15 1.1E-19 157.5 14.8 206 392-617 39-270 (567)
127 4gcn_A Protein STI-1; structur 99.6 9.3E-15 3.2E-19 122.0 14.3 99 37-135 9-115 (127)
128 3rkv_A Putative peptidylprolyl 99.6 1.9E-14 6.5E-19 126.1 15.8 113 37-149 12-144 (162)
129 2xcb_A PCRH, regulatory protei 99.6 4E-15 1.4E-19 127.2 10.9 112 372-483 9-120 (142)
130 2xcb_A PCRH, regulatory protei 99.6 2.1E-14 7.1E-19 122.7 14.0 130 402-531 5-134 (142)
131 3mv2_B Coatomer subunit epsilo 99.6 1.7E-13 5.9E-18 129.7 21.4 224 382-623 46-291 (310)
132 3upv_A Heat shock protein STI1 99.6 5.8E-14 2E-18 117.1 16.1 114 380-493 3-122 (126)
133 2qfc_A PLCR protein; TPR, HTH, 99.6 1.2E-13 4.3E-18 134.0 20.5 166 380-545 74-265 (293)
134 3upv_A Heat shock protein STI1 99.6 4.1E-14 1.4E-18 118.1 14.5 115 517-631 4-124 (126)
135 1dce_A Protein (RAB geranylger 99.6 8.2E-14 2.8E-18 146.8 19.9 172 466-637 46-244 (567)
136 2qfc_A PLCR protein; TPR, HTH, 99.6 3.3E-13 1.1E-17 131.0 21.7 167 414-580 74-266 (293)
137 1hh8_A P67PHOX, NCF-2, neutrop 99.6 1.7E-13 5.7E-18 126.2 18.7 150 449-613 6-171 (213)
138 1hh8_A P67PHOX, NCF-2, neutrop 99.6 1.7E-13 5.8E-18 126.1 18.7 133 381-516 6-154 (213)
139 2fbn_A 70 kDa peptidylprolyl i 99.6 1E-14 3.6E-19 132.6 10.1 150 422-571 11-176 (198)
140 2fbn_A 70 kDa peptidylprolyl i 99.6 7.9E-15 2.7E-19 133.4 9.2 155 451-605 6-176 (198)
141 1a17_A Serine/threonine protei 99.6 2.9E-13 9.8E-18 118.9 19.0 132 381-512 13-146 (166)
142 2e2e_A Formate-dependent nitri 99.6 5E-14 1.7E-18 125.5 14.1 130 391-520 20-152 (177)
143 2e2e_A Formate-dependent nitri 99.6 2.7E-14 9.2E-19 127.3 12.3 123 462-584 23-148 (177)
144 3u3w_A Transcriptional activat 99.5 1.6E-13 5.4E-18 133.3 18.6 163 383-545 77-265 (293)
145 2vyi_A SGTA protein; chaperone 99.5 1.1E-13 3.7E-18 116.0 15.0 123 514-636 9-131 (131)
146 1a17_A Serine/threonine protei 99.5 3.5E-13 1.2E-17 118.4 18.5 128 416-543 14-143 (166)
147 2vyi_A SGTA protein; chaperone 99.5 2.4E-13 8.1E-18 113.9 16.0 123 377-499 8-130 (131)
148 2lni_A Stress-induced-phosphop 99.5 2.2E-13 7.6E-18 114.6 15.6 124 375-498 10-133 (133)
149 3sz7_A HSC70 cochaperone (SGT) 99.5 2E-13 6.9E-18 119.8 15.5 116 377-492 7-122 (164)
150 2lni_A Stress-induced-phosphop 99.5 3.4E-13 1.2E-17 113.4 16.1 118 448-565 15-132 (133)
151 3u3w_A Transcriptional activat 99.5 5.7E-13 2E-17 129.3 19.3 159 456-614 82-266 (293)
152 3sz7_A HSC70 cochaperone (SGT) 99.5 2.8E-13 9.7E-18 118.9 14.8 112 414-525 10-121 (164)
153 3mv2_B Coatomer subunit epsilo 99.5 1.2E-12 4.1E-17 123.9 18.8 185 400-589 85-291 (310)
154 1na0_A Designed protein CTPR3; 99.5 1.3E-12 4.3E-17 108.4 16.9 117 517-633 9-125 (125)
155 4gcn_A Protein STI-1; structur 99.5 3.7E-13 1.3E-17 112.2 12.9 103 519-622 10-119 (127)
156 1na0_A Designed protein CTPR3; 99.5 2.7E-12 9.2E-17 106.3 18.0 110 417-526 11-120 (125)
157 3q49_B STIP1 homology and U bo 99.5 4.8E-13 1.6E-17 113.3 13.4 104 480-583 6-109 (137)
158 1kt0_A FKBP51, 51 kDa FK506-bi 99.5 6.3E-14 2.1E-18 144.8 9.3 159 394-571 247-405 (457)
159 3q49_B STIP1 homology and U bo 99.5 1.1E-12 3.6E-17 111.2 15.1 105 377-481 5-109 (137)
160 3rkv_A Putative peptidylprolyl 99.5 5.3E-13 1.8E-17 116.8 13.7 90 547-636 59-149 (162)
161 1kt0_A FKBP51, 51 kDa FK506-bi 99.5 5E-14 1.7E-18 145.5 8.2 133 371-503 258-405 (457)
162 1hxi_A PEX5, peroxisome target 99.5 6E-13 2.1E-17 109.7 12.8 101 383-483 19-119 (121)
163 1elw_A TPR1-domain of HOP; HOP 99.5 2.4E-12 8.3E-17 105.4 16.3 113 517-629 4-116 (118)
164 1elw_A TPR1-domain of HOP; HOP 99.5 3.8E-12 1.3E-16 104.2 17.1 113 381-493 4-116 (118)
165 1hxi_A PEX5, peroxisome target 99.5 6E-13 2E-17 109.8 12.1 99 520-618 20-118 (121)
166 2hr2_A Hypothetical protein; a 99.4 7.3E-13 2.5E-17 111.7 12.3 104 381-484 11-137 (159)
167 1zu2_A Mitochondrial import re 99.4 3.4E-13 1.2E-17 113.4 8.9 105 48-153 14-140 (158)
168 3gw4_A Uncharacterized protein 99.4 3.6E-12 1.2E-16 116.0 16.1 96 485-580 68-176 (203)
169 2dba_A Smooth muscle cell asso 99.4 3.9E-12 1.3E-16 109.2 15.3 116 514-629 25-143 (148)
170 3gw4_A Uncharacterized protein 99.4 2.9E-12 9.8E-17 116.7 15.0 157 460-616 3-178 (203)
171 2dba_A Smooth muscle cell asso 99.4 5.3E-12 1.8E-16 108.3 15.7 120 376-495 23-145 (148)
172 2xev_A YBGF; tetratricopeptide 99.4 6.6E-12 2.3E-16 104.9 15.4 109 384-492 5-119 (129)
173 2xev_A YBGF; tetratricopeptide 99.4 9.8E-12 3.3E-16 103.9 15.7 111 417-527 4-120 (129)
174 1elr_A TPR2A-domain of HOP; HO 99.4 4.7E-12 1.6E-16 105.9 13.1 117 517-634 4-127 (131)
175 3k9i_A BH0479 protein; putativ 99.4 1.3E-12 4.5E-17 107.2 9.3 92 48-139 2-97 (117)
176 1elr_A TPR2A-domain of HOP; HO 99.4 1E-11 3.6E-16 103.7 13.8 114 381-495 4-124 (131)
177 1wao_1 Serine/threonine protei 99.4 3.3E-13 1.1E-17 139.8 5.3 133 485-617 8-153 (477)
178 2kck_A TPR repeat; tetratricop 99.4 4.6E-12 1.6E-16 102.6 11.1 106 513-618 2-110 (112)
179 2kck_A TPR repeat; tetratricop 99.4 5.6E-12 1.9E-16 102.2 11.5 101 414-514 5-108 (112)
180 4b4t_Q 26S proteasome regulato 99.3 1.6E-11 5.4E-16 126.5 17.4 200 381-580 4-245 (434)
181 1wao_1 Serine/threonine protei 99.3 3.3E-13 1.1E-17 139.9 4.7 136 381-516 6-154 (477)
182 2if4_A ATFKBP42; FKBP-like, al 99.3 1.1E-12 3.9E-17 129.6 8.2 154 381-551 179-333 (338)
183 3k9i_A BH0479 protein; putativ 99.3 3.1E-12 1.1E-16 104.9 9.4 107 530-636 3-112 (117)
184 2if4_A ATFKBP42; FKBP-like, al 99.3 1.2E-12 4.1E-17 129.4 8.0 161 408-585 172-333 (338)
185 4b4t_Q 26S proteasome regulato 99.3 4.2E-11 1.4E-15 123.3 19.9 200 415-614 4-245 (434)
186 1zu2_A Mitochondrial import re 99.3 6.2E-12 2.1E-16 105.7 11.0 90 393-482 14-124 (158)
187 1ihg_A Cyclophilin 40; ppiase 99.3 1.2E-11 4.2E-16 123.4 14.1 138 483-638 223-360 (370)
188 2uy1_A Cleavage stimulation fa 99.3 1.7E-08 6E-13 104.5 38.2 203 398-613 196-412 (493)
189 1ihg_A Cyclophilin 40; ppiase 99.3 2E-11 6.8E-16 121.9 14.8 140 381-538 223-362 (370)
190 3ro3_A PINS homolog, G-protein 99.3 4.4E-11 1.5E-15 104.1 12.8 137 450-614 10-158 (164)
191 3ro3_A PINS homolog, G-protein 99.2 7E-11 2.4E-15 102.8 13.4 131 415-545 9-157 (164)
192 2uy1_A Cleavage stimulation fa 99.2 8.5E-08 2.9E-12 99.3 33.0 56 467-523 197-252 (493)
193 2l6j_A TPR repeat-containing p 99.1 3.7E-10 1.3E-14 91.2 11.6 89 551-639 4-98 (111)
194 1na3_A Designed protein CTPR2; 99.1 1.3E-09 4.5E-14 84.3 11.8 85 549-633 7-91 (91)
195 2kat_A Uncharacterized protein 99.1 1E-09 3.5E-14 89.4 11.0 82 399-480 3-84 (115)
196 2kat_A Uncharacterized protein 99.1 1.1E-09 3.6E-14 89.2 10.9 82 501-582 3-84 (115)
197 2l6j_A TPR repeat-containing p 99.1 1.1E-10 3.8E-15 94.3 4.9 92 381-472 4-101 (111)
198 1na3_A Designed protein CTPR2; 99.0 3.1E-09 1E-13 82.1 12.3 83 380-462 8-90 (91)
199 3ma5_A Tetratricopeptide repea 99.0 2.4E-09 8.3E-14 84.5 9.0 70 67-136 5-74 (100)
200 3ma5_A Tetratricopeptide repea 98.9 6.9E-09 2.4E-13 81.8 10.1 86 547-632 3-90 (100)
201 2kc7_A BFR218_protein; tetratr 98.9 3.1E-09 1E-13 83.7 7.6 89 385-481 4-93 (99)
202 1klx_A Cysteine rich protein B 98.9 3.3E-08 1.1E-12 83.1 14.1 108 499-614 11-126 (138)
203 3ly7_A Transcriptional activat 98.9 7.7E-08 2.6E-12 92.7 18.0 146 380-550 195-343 (372)
204 2kc7_A BFR218_protein; tetratr 98.9 5.5E-09 1.9E-13 82.3 8.0 88 522-617 5-93 (99)
205 3ly7_A Transcriptional activat 98.9 1E-07 3.4E-12 91.9 17.9 157 406-587 185-346 (372)
206 1klx_A Cysteine rich protein B 98.9 7.5E-08 2.6E-12 80.9 15.1 109 396-512 10-126 (138)
207 3u64_A Protein TP_0956; tetrat 98.8 1.9E-07 6.6E-12 85.9 17.7 85 533-617 179-272 (301)
208 3u64_A Protein TP_0956; tetrat 98.8 2.4E-07 8.2E-12 85.3 17.6 186 397-584 48-273 (301)
209 3n71_A Histone lysine methyltr 98.7 6.2E-08 2.1E-12 99.4 12.7 125 454-578 314-462 (490)
210 3n71_A Histone lysine methyltr 98.7 1E-07 3.5E-12 97.8 13.4 130 418-547 312-465 (490)
211 3bee_A Putative YFRE protein; 98.6 5E-07 1.7E-11 69.3 10.7 71 377-447 2-75 (93)
212 3qwp_A SET and MYND domain-con 98.5 1.1E-06 3.9E-11 88.7 15.5 99 41-139 292-412 (429)
213 3bee_A Putative YFRE protein; 98.5 6.5E-07 2.2E-11 68.7 10.3 72 411-482 2-76 (93)
214 1pc2_A Mitochondria fission pr 98.5 1.6E-06 5.6E-11 71.9 12.5 87 502-588 17-108 (152)
215 1pc2_A Mitochondria fission pr 98.5 1.8E-06 6E-11 71.7 12.2 89 399-487 16-109 (152)
216 3qww_A SET and MYND domain-con 98.5 8.7E-07 3E-11 89.4 12.6 85 48-132 310-411 (433)
217 2v5f_A Prolyl 4-hydroxylase su 98.4 3.5E-06 1.2E-10 66.5 11.6 77 380-456 4-87 (104)
218 2v5f_A Prolyl 4-hydroxylase su 98.3 4.5E-06 1.5E-10 65.8 11.0 73 554-626 8-87 (104)
219 3qwp_A SET and MYND domain-con 98.2 1.1E-05 3.7E-10 81.5 13.2 87 493-579 297-399 (429)
220 3qww_A SET and MYND domain-con 98.2 8.7E-06 3E-10 82.1 12.2 51 461-511 310-368 (433)
221 4g26_A Pentatricopeptide repea 98.1 0.00033 1.1E-08 72.4 22.7 162 418-579 29-203 (501)
222 4g26_A Pentatricopeptide repea 98.1 0.00045 1.5E-08 71.4 23.0 163 384-546 29-204 (501)
223 4h7y_A Dual specificity protei 98.0 0.00017 5.7E-09 58.6 13.4 107 513-620 9-129 (161)
224 1nzn_A CGI-135 protein, fissio 98.0 0.00016 5.6E-09 57.5 12.7 89 501-589 19-112 (126)
225 1nzn_A CGI-135 protein, fissio 97.8 0.00023 7.8E-09 56.7 11.5 85 401-485 21-110 (126)
226 4h7y_A Dual specificity protei 97.8 0.00058 2E-08 55.5 13.7 107 479-586 9-129 (161)
227 3ffl_A Anaphase-promoting comp 97.6 0.00043 1.5E-08 57.6 10.5 88 42-129 26-148 (167)
228 3ffl_A Anaphase-promoting comp 97.4 0.001 3.5E-08 55.5 10.1 133 382-527 21-165 (167)
229 3o48_A Mitochondria fission 1 97.2 0.0046 1.6E-07 49.3 11.4 83 376-458 35-121 (134)
230 1y8m_A FIS1; mitochondria, unk 97.1 0.018 6.1E-07 46.6 13.4 80 549-628 37-120 (144)
231 3o48_A Mitochondria fission 1 97.0 0.013 4.3E-07 46.8 12.1 75 551-625 40-118 (134)
232 1y8m_A FIS1; mitochondria, unk 97.0 0.035 1.2E-06 44.9 14.3 74 378-451 36-113 (144)
233 3kae_A CDC27, possible protein 96.6 0.19 6.5E-06 41.5 16.3 182 428-617 15-240 (242)
234 3txn_A 26S proteasome regulato 96.5 0.74 2.5E-05 45.1 24.1 227 382-610 20-280 (394)
235 3kae_A CDC27, possible protein 96.3 0.36 1.2E-05 39.9 19.0 99 379-482 31-147 (242)
236 4gns_B Protein CSD3, chitin bi 96.3 0.061 2.1E-06 57.5 14.9 114 462-576 261-396 (754)
237 3txn_A 26S proteasome regulato 96.3 0.13 4.6E-06 50.3 16.2 187 415-601 19-236 (394)
238 3mkq_A Coatomer beta'-subunit; 96.2 0.33 1.1E-05 53.5 21.4 100 389-509 607-707 (814)
239 4gns_B Protein CSD3, chitin bi 96.2 0.03 1E-06 59.8 11.8 115 394-509 261-397 (754)
240 3mkq_A Coatomer beta'-subunit; 95.8 0.52 1.8E-05 51.9 20.4 180 424-635 608-799 (814)
241 3mkq_B Coatomer subunit alpha; 95.4 0.4 1.4E-05 40.7 13.3 107 381-508 8-114 (177)
242 1qsa_A Protein (soluble lytic 95.4 1.4 4.7E-05 46.3 20.4 123 490-613 221-347 (618)
243 4b4t_P 26S proteasome regulato 95.4 2 6.8E-05 43.2 21.0 185 394-580 29-247 (445)
244 1qsa_A Protein (soluble lytic 95.1 3.8 0.00013 42.9 29.5 259 377-638 98-432 (618)
245 3mkq_B Coatomer subunit alpha; 95.0 0.97 3.3E-05 38.3 14.5 109 448-577 7-115 (177)
246 2ff4_A Probable regulatory pro 95.0 0.19 6.3E-06 49.8 11.9 86 45-130 124-232 (388)
247 1zbp_A Hypothetical protein VP 94.9 1.3 4.6E-05 40.2 16.0 118 459-583 7-132 (273)
248 4b4t_P 26S proteasome regulato 94.7 3.9 0.00013 41.0 21.6 239 375-616 50-326 (445)
249 2ff4_A Probable regulatory pro 94.4 0.61 2.1E-05 46.1 14.0 114 385-511 119-233 (388)
250 1zbp_A Hypothetical protein VP 94.0 1.4 4.8E-05 40.0 14.0 59 390-448 6-64 (273)
251 4b4t_S RPN3, 26S proteasome re 93.4 1.8 6E-05 43.7 15.0 131 383-515 138-302 (523)
252 1ya0_A SMG-7 transcript varian 93.4 0.42 1.4E-05 48.6 10.7 79 485-563 154-232 (497)
253 4fhn_B Nucleoporin NUP120; pro 93.4 2.5 8.5E-05 48.4 18.4 142 386-532 817-986 (1139)
254 1ya0_A SMG-7 transcript varian 93.3 0.64 2.2E-05 47.2 11.8 80 518-597 153-232 (497)
255 4b4t_R RPN7, 26S proteasome re 92.1 0.62 2.1E-05 46.7 10.0 62 416-477 132-196 (429)
256 3spa_A Mtrpol, DNA-directed RN 92.0 2 7E-05 47.2 14.1 99 449-547 127-231 (1134)
257 4b4t_R RPN7, 26S proteasome re 91.9 0.68 2.3E-05 46.4 10.0 101 379-479 129-238 (429)
258 3spa_A Mtrpol, DNA-directed RN 91.7 2.4 8.3E-05 46.6 14.1 99 415-513 127-231 (1134)
259 4b4t_S RPN3, 26S proteasome re 91.5 0.67 2.3E-05 46.7 9.2 126 458-583 145-302 (523)
260 4fhn_B Nucleoporin NUP120; pro 90.8 5.1 0.00018 45.8 16.9 142 488-634 817-986 (1139)
261 4ady_A RPN2, 26S proteasome re 90.1 3.8 0.00013 44.8 13.9 226 381-613 413-657 (963)
262 4ady_A RPN2, 26S proteasome re 88.6 6 0.0002 43.3 14.1 238 385-629 380-636 (963)
263 1wy6_A Hypothetical protein ST 85.9 6.4 0.00022 31.4 9.1 79 48-130 73-152 (172)
264 4a5x_A MITD1, MIT domain-conta 74.4 4.3 0.00015 29.7 4.5 36 30-65 10-45 (86)
265 3lpz_A GET4 (YOR164C homolog); 73.5 62 0.0021 30.6 27.1 26 481-506 134-159 (336)
266 2wpv_A GET4, UPF0363 protein Y 72.2 65 0.0022 30.2 23.4 27 481-507 132-158 (312)
267 4gq2_M Nucleoporin NUP120; bet 69.2 39 0.0013 37.6 12.8 106 523-632 816-949 (950)
268 3ax2_A Mitochondrial import re 68.6 11 0.00037 26.4 5.1 36 37-72 17-53 (73)
269 2wpv_A GET4, UPF0363 protein Y 68.2 79 0.0027 29.6 24.2 80 515-612 132-215 (312)
270 2crb_A Nuclear receptor bindin 67.1 5.9 0.0002 28.8 3.6 28 103-130 15-42 (97)
271 4gq2_M Nucleoporin NUP120; bet 66.8 41 0.0014 37.5 12.4 108 387-512 816-926 (950)
272 2cfu_A SDSA1; SDS-hydrolase, l 64.2 13 0.00044 39.4 7.4 48 73-120 453-500 (658)
273 2ijq_A Hypothetical protein; s 59.5 51 0.0018 27.2 8.5 61 383-443 34-103 (161)
274 2vkj_A TM1634; membrane protei 56.1 19 0.00063 25.9 4.5 27 44-70 61-87 (106)
275 3ax2_A Mitochondrial import re 56.1 25 0.00087 24.5 5.2 32 105-136 19-50 (73)
276 3lpz_A GET4 (YOR164C homolog); 54.5 1.4E+02 0.0049 28.1 22.6 200 380-598 54-295 (336)
277 2crb_A Nuclear receptor bindin 54.3 18 0.00062 26.3 4.3 25 72-96 18-42 (97)
278 1om2_A Protein (mitochondrial 52.9 21 0.00072 26.4 4.6 37 36-72 19-56 (95)
279 3t5x_A PCI domain-containing p 51.5 32 0.0011 29.9 6.5 34 381-414 14-47 (203)
280 2ynq_A ESSB; membrane protein, 51.1 42 0.0014 27.5 6.5 88 37-129 9-99 (161)
281 2w2u_A Hypothetical P60 katani 49.8 30 0.001 24.9 5.0 16 48-63 31-46 (83)
282 2qx5_A Nucleoporin NIC96; mRNA 48.5 2.6E+02 0.009 29.3 14.2 214 388-618 301-570 (661)
283 2ijq_A Hypothetical protein; s 47.2 1.2E+02 0.004 25.1 8.8 61 520-580 35-104 (161)
284 2v6y_A AAA family ATPase, P60 44.8 30 0.001 24.9 4.4 16 48-63 23-38 (83)
285 3t5x_A PCI domain-containing p 43.0 61 0.0021 28.1 7.0 82 517-606 14-100 (203)
286 3lvg_A Clathrin heavy chain 1; 42.8 0.00018 6E-09 70.7 -30.7 224 379-631 52-275 (624)
287 2rpa_A Katanin P60 ATPase-cont 42.1 21 0.00071 25.4 3.0 25 73-97 16-40 (78)
288 1om2_A Protein (mitochondrial 41.3 31 0.0011 25.5 3.9 32 105-136 22-53 (95)
289 3t5v_B Nuclear mRNA export pro 39.9 68 0.0023 31.9 7.5 64 487-550 180-254 (455)
290 3t5v_B Nuclear mRNA export pro 39.0 68 0.0023 31.9 7.4 63 522-584 181-254 (455)
291 3esl_A Checkpoint serine/threo 38.8 1.1E+02 0.0039 26.2 7.7 57 41-97 84-143 (202)
292 2v6x_A Vacuolar protein sortin 38.6 16 0.00055 26.5 2.1 19 47-65 24-42 (85)
293 1pgy_A SWA2P; UBA, ubiquitin, 38.5 38 0.0013 20.5 3.2 25 40-64 8-33 (47)
294 2yhe_A SEC-alkyl sulfatase; hy 44.2 6.8 0.00023 41.5 0.0 50 73-122 465-514 (668)
295 2w2u_A Hypothetical P60 katani 37.7 37 0.0013 24.4 3.9 13 53-65 17-29 (83)
296 2cwy_A Hypothetical protein TT 37.2 88 0.003 23.1 6.0 28 386-413 6-33 (94)
297 2rpa_A Katanin P60 ATPase-cont 36.9 40 0.0014 23.9 3.8 28 383-410 14-41 (78)
298 2v6y_A AAA family ATPase, P60 35.5 41 0.0014 24.1 3.9 12 54-65 10-21 (83)
299 2cfu_A SDSA1; SDS-hydrolase, l 32.6 84 0.0029 33.2 7.3 49 415-463 449-497 (658)
300 3myv_A SUSD superfamily protei 31.9 74 0.0025 31.7 6.6 46 85-130 164-217 (454)
301 1wfd_A Hypothetical protein 15 31.1 59 0.002 23.9 4.2 15 49-63 28-42 (93)
302 2cwy_A Hypothetical protein TT 29.9 1.7E+02 0.0057 21.6 6.6 25 524-548 8-32 (94)
303 3kez_A Putative sugar binding 29.8 77 0.0026 31.7 6.2 47 85-131 170-224 (461)
304 3mcx_A SUSD superfamily protei 28.5 89 0.0031 31.4 6.5 47 85-131 176-230 (477)
305 4a5x_A MITD1, MIT domain-conta 28.4 64 0.0022 23.3 3.9 22 75-96 22-43 (86)
306 3re2_A Predicted protein; meni 26.9 2.1E+02 0.0073 27.1 7.8 66 515-580 253-325 (472)
307 2vkj_A TM1634; membrane protei 25.2 1.5E+02 0.0051 21.4 5.0 33 379-411 51-83 (106)
308 1wfd_A Hypothetical protein 15 25.1 77 0.0026 23.3 3.9 14 53-66 13-26 (93)
309 3lew_A SUSD-like carbohydrate 25.1 1.4E+02 0.0048 30.1 7.2 47 85-131 174-231 (495)
310 2dl1_A Spartin; SPG20, MIT, st 24.8 53 0.0018 25.2 2.9 32 85-131 19-50 (116)
311 2yru_A Steroid receptor RNA ac 23.9 59 0.002 25.3 3.1 52 14-65 39-90 (118)
312 3u84_A Menin; MLL, JUND, ledgf 22.4 3.9E+02 0.013 25.9 8.8 29 583-611 316-344 (550)
313 2v6x_A Vacuolar protein sortin 22.1 1.1E+02 0.0037 21.9 4.2 11 53-63 11-21 (85)
314 2cpt_A SKD1 protein, vacuolar 20.9 1.1E+02 0.0038 23.6 4.2 11 53-63 16-26 (117)
315 3snx_A SUSD homolog, putative 20.1 1.5E+02 0.005 29.7 6.1 46 86-131 161-219 (460)
No 1
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=2.2e-40 Score=338.47 Aligned_cols=381 Identities=16% Similarity=0.157 Sum_probs=349.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHcccCc-hhHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHH
Q 006562 44 AKLCSLRNWSKAIRILDSLLAQSYE-IQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEA 122 (640)
Q Consensus 44 ~~~~~~~~y~~Ai~~y~~ai~~~~~-~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~~~~A 122 (640)
..+++.|+|++|+..|.+++..+|+ +..+..++.++.+.|++++|+..++++++.+|.++.+++.+|.+|...|++++|
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A 86 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 4568999999999999999999955 456889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCChHHHHHHHhHHHHHHHHhhhccchhhhhhcccccccccccCCCCCCCcchhhhhcCCCCCcccccc
Q 006562 123 LSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSS 202 (640)
Q Consensus 123 ~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (640)
+..|++++++.|+.+..+..+..+..
T Consensus 87 ~~~~~~al~~~p~~~~~~~~l~~~~~------------------------------------------------------ 112 (388)
T 1w3b_A 87 IEHYRHALRLKPDFIDGYINLAAALV------------------------------------------------------ 112 (388)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHH------------------------------------------------------
T ss_pred HHHHHHHHHcCcchHHHHHHHHHHHH------------------------------------------------------
Confidence 99999998888877544322211110
Q ss_pred CCccccccccCCCCCCCCcccccccccCCCcccccccccccCCccccccccCCCCCCCCccccccccchhhccccCCccc
Q 006562 203 QSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFD 282 (640)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (640)
T Consensus 113 -------------------------------------------------------------------------------- 112 (388)
T 1w3b_A 113 -------------------------------------------------------------------------------- 112 (388)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCcccccccCCcccccccccccccccCccCCCCCCCCcccccccccCCCCCCchHHHHHhhHHHhhhhHHHHHHH
Q 006562 283 ICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEA 362 (640)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 362 (640)
..++++.+...+.+
T Consensus 113 ---------------------------------------------------~~g~~~~A~~~~~~--------------- 126 (388)
T 1w3b_A 113 ---------------------------------------------------AAGDMEGAVQAYVS--------------- 126 (388)
T ss_dssp ---------------------------------------------------HHSCSSHHHHHHHH---------------
T ss_pred ---------------------------------------------------HcCCHHHHHHHHHH---------------
Confidence 11223444333322
Q ss_pred HhhHHHHHhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 006562 363 KRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAI 442 (640)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 442 (640)
+....|.....+..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++
T Consensus 127 ----------al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 196 (388)
T 1w3b_A 127 ----------ALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAV 196 (388)
T ss_dssp ----------HHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred ----------HHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2334678888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 006562 443 QSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTY 522 (640)
Q Consensus 443 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 522 (640)
+.+|++..++..+|.++...|++++|+..+++++...|+++.++..+|.++...|++++|+..++++++.+|+++.++..
T Consensus 197 ~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 276 (388)
T 1w3b_A 197 TLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCN 276 (388)
T ss_dssp HHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHH
T ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHH
Q 006562 523 LGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHK 602 (640)
Q Consensus 523 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~ 602 (640)
+|.++...|++++|+..|++++...|.++.++..+|.++...|++++|+..++++++..|+++.++..+|.++...|+++
T Consensus 277 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 356 (388)
T 1w3b_A 277 LANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQ 356 (388)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHHHcCC
Q 006562 603 KAIKDLSSGLGIDPSNIECLYLRASCYHAIGE 634 (640)
Q Consensus 603 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 634 (640)
+|+..|+++++++|+++.+++.+|.++..+|+
T Consensus 357 ~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 357 EALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 99999999999999999999999999998875
No 2
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=5.8e-37 Score=313.17 Aligned_cols=267 Identities=21% Similarity=0.220 Sum_probs=260.8
Q ss_pred hhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHH
Q 006562 373 ISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAW 452 (640)
Q Consensus 373 ~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 452 (640)
+....|.++..+..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++++..+|+++.++
T Consensus 93 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 172 (388)
T 1w3b_A 93 ALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAW 172 (388)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH
Confidence 34457888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 006562 453 KRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE 532 (640)
Q Consensus 453 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~ 532 (640)
..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|+
T Consensus 173 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 252 (388)
T 1w3b_A 173 SNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGL 252 (388)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 006562 533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGL 612 (640)
Q Consensus 533 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 612 (640)
+++|+..|++++..+|.++.++..+|.++...|++++|+..|+++++..|.++.++..+|.++...|++++|+..+++++
T Consensus 253 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 332 (388)
T 1w3b_A 253 IDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKAL 332 (388)
T ss_dssp HHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHHHHHHcCCccccc
Q 006562 613 GIDPSNIECLYLRASCYHAIGEYREAV 639 (640)
Q Consensus 613 ~~~p~~~~~~~~la~~~~~~g~~~~Al 639 (640)
+..|++..++..+|.++...|++++|+
T Consensus 333 ~~~p~~~~~~~~l~~~~~~~g~~~~A~ 359 (388)
T 1w3b_A 333 EVFPEFAAAHSNLASVLQQQGKLQEAL 359 (388)
T ss_dssp TSCTTCHHHHHHHHHHHHTTTCCHHHH
T ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999999999999885
No 3
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-36 Score=322.48 Aligned_cols=457 Identities=14% Similarity=0.105 Sum_probs=344.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHcccCchhHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHH
Q 006562 42 ELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEE 121 (640)
Q Consensus 42 ~~~~~~~~~~y~~Ai~~y~~ai~~~~~~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~~~~ 121 (640)
.+..++..|+|++|+.+|++++..+|++..+.++|.||.++|++++|+..++++++.+|+++.+++.+|.+|..+|++++
T Consensus 12 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 91 (514)
T 2gw1_A 12 KGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFAD 91 (514)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHH
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCChHHHHHHHhHHHHHHHHhhhccchhhhhhcccccccccccCCCCCCCcchhhhhcCCCCCccccc
Q 006562 122 ALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSS 201 (640)
Q Consensus 122 A~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (640)
|+..|++++++.|.........+....................
T Consensus 92 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------------------------------------- 134 (514)
T 2gw1_A 92 AMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDID------------------------------------- 134 (514)
T ss_dssp HHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC------------------------------------------
T ss_pred HHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------------
Confidence 9999999999998776554433332222111111110000000
Q ss_pred cCCccccccccCCCCCCCCcccccccccCCCcccccccccccCCccccccccCCCCCCCCccccccccchhhccccCCcc
Q 006562 202 SQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDF 281 (640)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (640)
.....+.... ..+...... ..... .....+
T Consensus 135 -----------~~~~~~~~~~-~~~~~~~~~----~~~~~--------------------------~~~~~~-------- 164 (514)
T 2gw1_A 135 -----------TATATPTELS-TQPAKERKD----KQENL--------------------------PSVTSM-------- 164 (514)
T ss_dssp --------------------------------------CC--------------------------CCHHHH--------
T ss_pred -----------HHHHhhhhcc-CChhhHHHh----hccCC--------------------------chhHHH--------
Confidence 0000000000 000000000 00000 000000
Q ss_pred cccCCCCCcccccccCCcccccccccccccccCccCCCCCCCCcccccccccCCCCCCchHHHHHhhHHH-----hhhhH
Q 006562 282 DICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFK-----WDMLK 356 (640)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~ 356 (640)
......+... . .. . ....+..+...+...... .+...
T Consensus 165 -----------------------~~~~~~~~~~-------~----~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (514)
T 2gw1_A 165 -----------------------ASFFGIFKPE-------L----TF--A--NYDESNEADKELMNGLSNLYKRSPESYD 206 (514)
T ss_dssp -----------------------HHHHTTSCCC-------C----CC--S--SCCSSCHHHHHHHHHHHHHSSCCTTHHH
T ss_pred -----------------------HHHHhhcCHH-------H----HH--H--HhcCCcHHHHHHHHHHHHHHhhhhccHH
Confidence 0000000000 0 00 0 000011111111111100 11111
Q ss_pred HHHHHHHhhHHHHHhh----h---hc---cCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 006562 357 ETSNEAKRNKKFCVTR----I---SK---SKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARA 426 (640)
Q Consensus 357 ~~~~~~~~~~~~~~~~----~---~~---~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~ 426 (640)
.+.. .....+.. + .. ..|..+..++.+|.++...|++++|+..|+++++.+|. +.++..+|.++.
T Consensus 207 ~A~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~ 281 (514)
T 2gw1_A 207 KADE----SFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMA 281 (514)
T ss_dssp HHHH----HHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHH
T ss_pred HHHH----HHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHH
Confidence 1111 11111110 0 00 02666889999999999999999999999999999999 999999999999
Q ss_pred HccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006562 427 FQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506 (640)
Q Consensus 427 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 506 (640)
..|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..+
T Consensus 282 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 361 (514)
T 2gw1_A 282 DRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLF 361 (514)
T ss_dssp TSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHH------HHHHHHHHHHH---hcCHHHHHHHHHHH
Q 006562 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE------AWGHLTQFYQD---LANSEKALECLQQV 577 (640)
Q Consensus 507 ~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~------~~~~la~~~~~---~g~~~~A~~~~~~a 577 (640)
++++...|.++.++..+|.++...|++++|+..+++++...|.++. ++..+|.++.. .|++++|+..++++
T Consensus 362 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a 441 (514)
T 2gw1_A 362 SEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKA 441 (514)
T ss_dssp HHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHH
T ss_pred HHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999888755 99999999999 99999999999999
Q ss_pred HHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHH
Q 006562 578 LYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASC 628 (640)
Q Consensus 578 l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 628 (640)
+...|+++.++..+|.++...|++++|+..|+++++++|+++.++..+...
T Consensus 442 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 492 (514)
T 2gw1_A 442 SKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFA 492 (514)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred HHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999887766544
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.8e-35 Score=315.74 Aligned_cols=261 Identities=15% Similarity=0.127 Sum_probs=147.4
Q ss_pred cccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 006562 378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQ 457 (640)
Q Consensus 378 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 457 (640)
|.++..+..+|..+...|++++|+..|+++++.+|.+..++..++.++...|++++|+..+++++...|.+..++..+|.
T Consensus 302 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 381 (597)
T 2xpi_A 302 EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGI 381 (597)
T ss_dssp GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHH
Confidence 34455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Q 006562 458 ARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAE 537 (640)
Q Consensus 458 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~ 537 (640)
+|...|++++|+..|+++++..|.+..++..++.++...|++++|+..|++++...|.+..++..+|.++...|++++|+
T Consensus 382 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 461 (597)
T 2xpi_A 382 YYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLAN 461 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------CCCC-hHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006562 538 EAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI------DKRF-SKAYHLRGLLLHGLGQHKKAIKDLSS 610 (640)
Q Consensus 538 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~ 610 (640)
..|++++...|.++.++..+|.++...|++++|+..|+++++. +|+. ..++..+|.++...|++++|+..|++
T Consensus 462 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 541 (597)
T 2xpi_A 462 EYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQ 541 (597)
T ss_dssp HHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 5555555555555555555555555555555555555555554 3332 44555555555555555555555555
Q ss_pred hhccCCCCHHHHHHHHHHHHHcCCcccc
Q 006562 611 GLGIDPSNIECLYLRASCYHAIGEYREA 638 (640)
Q Consensus 611 al~~~p~~~~~~~~la~~~~~~g~~~~A 638 (640)
+++.+|+++.++..++.+|...|++++|
T Consensus 542 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A 569 (597)
T 2xpi_A 542 GLLLSTNDANVHTAIALVYLHKKIPGLA 569 (597)
T ss_dssp HHHHSSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhCCCChHHHHHHHHHHHHhCCHHHH
Confidence 5555555555555555555555555554
No 5
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=1.6e-34 Score=308.57 Aligned_cols=443 Identities=15% Similarity=0.075 Sum_probs=326.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHccc-CchhHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCH
Q 006562 41 IELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRK 119 (640)
Q Consensus 41 ~~~~~~~~~~~y~~Ai~~y~~ai~~~-~~~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~~ 119 (640)
..+..++..|+|++|+.+|++++..+ .++..++++|.||.++|++++|+..++++++.+|+++.+++.+|.+|..+|++
T Consensus 30 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 109 (537)
T 3fp2_A 30 NRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNF 109 (537)
T ss_dssp HHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCH
Confidence 34446799999999999999999999 56677999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCChHHHHHHHhHHHHHHHHhhhccchhhhhhcccccccccccCCCCCCCcchhhhhcCCCCCccc
Q 006562 120 EEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICD 199 (640)
Q Consensus 120 ~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (640)
++|+..|+ ++.+.|..........-.......+...+ ...
T Consensus 110 ~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~-----~~~---------------------------------- 149 (537)
T 3fp2_A 110 TDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVL-----NEN---------------------------------- 149 (537)
T ss_dssp HHHHHHHH-HHC-----------CHHHHHHHHHHHHHH-----HHH----------------------------------
T ss_pred HHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHH-----HHH----------------------------------
Confidence 99999996 87777766543211110000000010000 000
Q ss_pred cccCCccccccccCCCCCCCCcccccccccCCCcccccccccccCCccccccccCCCCCCCCccccccccchhhccccCC
Q 006562 200 SSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSD 279 (640)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (640)
+. ..+...... .+....+..+...+
T Consensus 150 -----------l~---~~~~~~~~~---~~~~~~~~~~~~~~-------------------------------------- 174 (537)
T 3fp2_A 150 -----------LS---KDEGRGSQV---LPSNTSLASFFGIF-------------------------------------- 174 (537)
T ss_dssp -----------CC----------CC---CCCHHHHHHHHHTS--------------------------------------
T ss_pred -----------HH---hCccccccc---cchHhHHHHHHHhc--------------------------------------
Confidence 00 000000000 00000000000000
Q ss_pred cccccCCCCCcccccccCCcccccccccccccccCccCCCCCCCCcccccccccCCCCCCchHHHHHhhHHHh----hhh
Q 006562 280 DFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKW----DML 355 (640)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~----~~~ 355 (640)
..... ................+....... ...
T Consensus 175 -----------------------~~~~~---------------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 210 (537)
T 3fp2_A 175 -----------------------DSHLE---------------------VSSVNTSSNYDTAYALLSDALQRLYSATDEG 210 (537)
T ss_dssp -----------------------CHHHH---------------------HHTSCCCCSSCSSHHHHHHHHHHHHTCSHHH
T ss_pred -----------------------ChHHH---------------------HHHHhhccccccHHHHHHHHHHHHHHhhhhh
Confidence 00000 000001111222221121111111 000
Q ss_pred HHHHHHHHhhHHHHHhhhhccCcccHH-------HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 006562 356 KETSNEAKRNKKFCVTRISKSKSISVD-------FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQ 428 (640)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~ 428 (640)
..............+..+....|.++. .+..+|..+...|++++|+..|++++..+|+ +.++..+|.++...
T Consensus 211 ~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 289 (537)
T 3fp2_A 211 YLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADK 289 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCS
T ss_pred hHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHh
Confidence 000011122333356667777777654 5788889999999999999999999999999 99999999999999
Q ss_pred cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006562 429 RELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSA 508 (640)
Q Consensus 429 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 508 (640)
|++++|+..++++++.+|.++.++..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..+++
T Consensus 290 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 369 (537)
T 3fp2_A 290 ENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNE 369 (537)
T ss_dssp SCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHH------HHHHHHHHHHHh----------cCHHHHHH
Q 006562 509 CVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE------AWGHLTQFYQDL----------ANSEKALE 572 (640)
Q Consensus 509 al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~------~~~~la~~~~~~----------g~~~~A~~ 572 (640)
++...|+++.++..+|.++...|++++|+..|++++...|.+.. .+..+|.++... |++++|+.
T Consensus 370 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~ 449 (537)
T 3fp2_A 370 TKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIK 449 (537)
T ss_dssp HHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHH
T ss_pred HHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHH
Confidence 99999999999999999999999999999999999998876543 356778899999 99999999
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHH
Q 006562 573 CLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLY 623 (640)
Q Consensus 573 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 623 (640)
+|+++++.+|+++.++..+|.++...|++++|+..|++++++.|+..+...
T Consensus 450 ~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 450 LLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 999999999999999999999999999999999999999999999886543
No 6
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=6.9e-34 Score=296.51 Aligned_cols=364 Identities=15% Similarity=0.138 Sum_probs=322.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHccc-CchhHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHH
Q 006562 44 AKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEA 122 (640)
Q Consensus 44 ~~~~~~~~y~~Ai~~y~~ai~~~-~~~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~~~~A 122 (640)
..++..|+|++|+.+|++++..+ .++..++.+|.+|..+|++++|+..++++++.+|++..+++.+|.+|..+|++++|
T Consensus 34 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 113 (450)
T 2y4t_A 34 KKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEA 113 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Confidence 35689999999999999999998 56677999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCh---HHHHHHHhHHHHHHHHhhhccchhhhhhcccccccccccCCCCCCCcchhhhhcCCCCCccc
Q 006562 123 LSVWEKGYEHALHQS---ADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICD 199 (640)
Q Consensus 123 ~~~~~~al~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (640)
+..|++++++.|..+ ..+..+..+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~l~~~----------------------------------------------------- 140 (450)
T 2y4t_A 114 EDDFKKVLKSNPSENEEKEAQSQLIKS----------------------------------------------------- 140 (450)
T ss_dssp HHHHHHHHTSCCCHHHHHHHHHHHHHH-----------------------------------------------------
T ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHH-----------------------------------------------------
Confidence 999999976665432 111000000
Q ss_pred cccCCccccccccCCCCCCCCcccccccccCCCcccccccccccCCccccccccCCCCCCCCccccccccchhhccccCC
Q 006562 200 SSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSD 279 (640)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (640)
T Consensus 141 -------------------------------------------------------------------------------- 140 (450)
T 2y4t_A 141 -------------------------------------------------------------------------------- 140 (450)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCCCcccccccCCcccccccccccccccCccCCCCCCCCcccccccccCCCCCCchHHHHHhhHHHhhhhHHHH
Q 006562 280 DFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETS 359 (640)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 359 (640)
T Consensus 141 -------------------------------------------------------------------------------- 140 (450)
T 2y4t_A 141 -------------------------------------------------------------------------------- 140 (450)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhHHHHHhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 006562 360 NEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFT 439 (640)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 439 (640)
.....++.+|..+...|++++|+..|+++++..|.++.++..+|.++...|++++|+..|+
T Consensus 141 -------------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 201 (450)
T 2y4t_A 141 -------------------DEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLK 201 (450)
T ss_dssp -------------------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHH
T ss_pred -------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 0023345678889999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHH
Q 006562 440 EAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHER------------GIVNFKFKDFNAAVEDLS 507 (640)
Q Consensus 440 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l------------a~~~~~~~~~~~A~~~~~ 507 (640)
++++.+|.++.++..+|.++...|++++|+..|++++...|++...+..+ |.++...|++++|+..|+
T Consensus 202 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 281 (450)
T 2y4t_A 202 AASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYE 281 (450)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998887666 999999999999999999
Q ss_pred HHHHhCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Q 006562 508 ACVKLDKENK----SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKR 583 (640)
Q Consensus 508 ~al~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 583 (640)
+++...|.++ ..+..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..|+++++.+|+
T Consensus 282 ~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 361 (450)
T 2y4t_A 282 SVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN 361 (450)
T ss_dssp HHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS
T ss_pred HHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc
Confidence 9999999985 478899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHH------------HHhcC-----CHHHHHHHHHH-hhccCCCCH----------HHHHHHHHHHHHcCCc
Q 006562 584 FSKAYHLRGLL------------LHGLG-----QHKKAIKDLSS-GLGIDPSNI----------ECLYLRASCYHAIGEY 635 (640)
Q Consensus 584 ~~~~~~~la~~------------~~~~g-----~~~~A~~~~~~-al~~~p~~~----------~~~~~la~~~~~~g~~ 635 (640)
++.++..++.+ |...| +.+++.+.|++ +++..|++. ..+..++.+|..+|+.
T Consensus 362 ~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~ 441 (450)
T 2y4t_A 362 DQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDP 441 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGG
T ss_pred hHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCH
Confidence 99999999954 44555 56778999986 788877631 3567789999999998
Q ss_pred cccc
Q 006562 636 REAV 639 (640)
Q Consensus 636 ~~Al 639 (640)
+.+.
T Consensus 442 ~~r~ 445 (450)
T 2y4t_A 442 EMRK 445 (450)
T ss_dssp GGC-
T ss_pred HHHH
Confidence 7653
No 7
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=5.2e-33 Score=280.22 Aligned_cols=214 Identities=14% Similarity=0.174 Sum_probs=175.7
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Q 006562 421 RGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFN 500 (640)
Q Consensus 421 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 500 (640)
+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|+++
T Consensus 126 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 205 (359)
T 3ieg_A 126 QALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHE 205 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 36677777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHhCCCcHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHccCcccHH----HHHHHHHHHHHh
Q 006562 501 AAVEDLSACVKLDKENKSAYT------------YLGLALSSIGEYKKAEEAHLKAIQLDRNFLE----AWGHLTQFYQDL 564 (640)
Q Consensus 501 ~A~~~~~~al~~~~~~~~~~~------------~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~----~~~~la~~~~~~ 564 (640)
+|+..+++++...|++..++. .+|.++...|++++|+..+++++...|.++. ++..+|.++...
T Consensus 206 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 285 (359)
T 3ieg_A 206 LSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKD 285 (359)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHc
Confidence 777777777777777665543 4488899999999999999999999988764 466789999999
Q ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCC
Q 006562 565 ANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGE 634 (640)
Q Consensus 565 g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 634 (640)
|++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++++|++..++..++.++..+++
T Consensus 286 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 355 (359)
T 3ieg_A 286 EKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQ 355 (359)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999988877654
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=7.6e-33 Score=288.58 Aligned_cols=338 Identities=17% Similarity=0.181 Sum_probs=299.1
Q ss_pred HHHHHHHHHHHHccc-CchhHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006562 52 WSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGY 130 (640)
Q Consensus 52 y~~Ai~~y~~ai~~~-~~~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~~~~A~~~~~~al 130 (640)
...+...+.+++..+ .+...+..+|.++++.|++++|+..++++++.+|+++.+++.+|.+|..+|++++|+..|++++
T Consensus 8 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 87 (450)
T 2y4t_A 8 SSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVI 87 (450)
T ss_dssp ---------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 345677788888888 4456689999999999999999999999999999999999999999999999999999999994
Q ss_pred hhccCChHHHHHHHhHHHHHHHHhhhccchhhhhhcccccccccccCCCCCCCcchhhhhcCCCCCccccccCCcccccc
Q 006562 131 EHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSET 210 (640)
Q Consensus 131 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (640)
++.|.
T Consensus 88 ~~~p~--------------------------------------------------------------------------- 92 (450)
T 2y4t_A 88 QLKMD--------------------------------------------------------------------------- 92 (450)
T ss_dssp HHCTT---------------------------------------------------------------------------
T ss_pred hcCCC---------------------------------------------------------------------------
Confidence 43221
Q ss_pred ccCCCCCCCCcccccccccCCCcccccccccccCCccccccccCCCCCCCCccccccccchhhccccCCcccccCCCCCc
Q 006562 211 CSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDICNGPIDK 290 (640)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (640)
T Consensus 93 -------------------------------------------------------------------------------- 92 (450)
T 2y4t_A 93 -------------------------------------------------------------------------------- 92 (450)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCCcccccccccccccccCccCCCCCCCCcccccccccCCCCCCchHHHHHhhHHHhhhhHHHHHHHHhhHHHHH
Q 006562 291 ASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCV 370 (640)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (640)
T Consensus 93 -------------------------------------------------------------------------------- 92 (450)
T 2y4t_A 93 -------------------------------------------------------------------------------- 92 (450)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH---HHHHHH------------HHHHHHccCHHHHH
Q 006562 371 TRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP---EALIGR------------GTARAFQRELEAAI 435 (640)
Q Consensus 371 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~---~~~~~l------------a~~~~~~g~~~~A~ 435 (640)
++..+..+|.++...|++++|+..|+++++.+|.++ .++..+ |.++...|++++|+
T Consensus 93 ---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~ 163 (450)
T 2y4t_A 93 ---------FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAI 163 (450)
T ss_dssp ---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred ---------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 144566789999999999999999999999999988 776555 66799999999999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 006562 436 SDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE 515 (640)
Q Consensus 436 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 515 (640)
..|++++...|.+..++..+|.++...|++++|+..|++++...|.++.++..+|.++...|++++|+..+++++...|+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 243 (450)
T 2y4t_A 164 AFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD 243 (450)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHccCcccH----HHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 006562 516 NKSAYTYL------------GLALSSIGEYKKAEEAHLKAIQLDRNFL----EAWGHLTQFYQDLANSEKALECLQQVLY 579 (640)
Q Consensus 516 ~~~~~~~l------------a~~~~~~g~~~~A~~~~~~a~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~ 579 (640)
+...+..+ |.++...|++++|+..|++++...|.++ ..+..+|.++...|++++|+..+++++.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 323 (450)
T 2y4t_A 244 HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQ 323 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 98887666 9999999999999999999999999984 4788999999999999999999999999
Q ss_pred hCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHcC
Q 006562 580 IDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIG 633 (640)
Q Consensus 580 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 633 (640)
..|+++.++..+|.++...|++++|+..|+++++++|+++.++..++.+....+
T Consensus 324 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 377 (450)
T 2y4t_A 324 MEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLK 377 (450)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHH
T ss_pred hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999997655543
No 9
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.4e-33 Score=303.64 Aligned_cols=259 Identities=17% Similarity=0.181 Sum_probs=247.9
Q ss_pred hhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHH
Q 006562 372 RISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEA 451 (640)
Q Consensus 372 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 451 (640)
.+....|.+...+..++.++...|++++|+..+++++...|.++.++..+|.+|...|++++|+..|+++++..|.+..+
T Consensus 330 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 409 (597)
T 2xpi_A 330 KILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPA 409 (597)
T ss_dssp HHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHH
Confidence 33344567788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 006562 452 WKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIG 531 (640)
Q Consensus 452 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g 531 (640)
|..++.++...|++++|+..|++++...|.+..++..+|.++...|++++|+..|+++++..|.++.++..+|.++...|
T Consensus 410 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 489 (597)
T 2xpi_A 410 WIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKS 489 (597)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHcc------Cccc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHH
Q 006562 532 EYKKAEEAHLKAIQL------DRNF-LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKA 604 (640)
Q Consensus 532 ~~~~A~~~~~~a~~~------~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A 604 (640)
++++|+..|++++.. +|.. ..+|..+|.++...|++++|+..++++++..|+++.++..+|.+|...|++++|
T Consensus 490 ~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 569 (597)
T 2xpi_A 490 DMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLA 569 (597)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHH
Confidence 999999999999988 5654 789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCCCHHHHHHHHHHHH
Q 006562 605 IKDLSSGLGIDPSNIECLYLRASCYH 630 (640)
Q Consensus 605 ~~~~~~al~~~p~~~~~~~~la~~~~ 630 (640)
...|+++++++|+++.++..++.+|.
T Consensus 570 ~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 570 ITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 99999999999999999999998874
No 10
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=1e-31 Score=270.83 Aligned_cols=325 Identities=14% Similarity=0.116 Sum_probs=291.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHccc-CchhHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHH
Q 006562 43 LAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEE 121 (640)
Q Consensus 43 ~~~~~~~~~y~~Ai~~y~~ai~~~-~~~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~~~~ 121 (640)
+..++..|+|++|+.+|++++..+ .++..++++|.++..+|++++|+..++++++.+|++..+++.+|.+|..+|++++
T Consensus 10 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 89 (359)
T 3ieg_A 10 GKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDE 89 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHH
Confidence 345689999999999999999999 5567799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcc---CChHHHHHHHhHHHHHHHHhhhccchhhhhhcccccccccccCCCCCCCcchhhhhcCCCCCcc
Q 006562 122 ALSVWEKGYEHAL---HQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDIC 198 (640)
Q Consensus 122 A~~~~~~al~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (640)
|+..|++++++.| ..+..+.. +
T Consensus 90 A~~~~~~~~~~~~~~~~~~~~~~~--------------l----------------------------------------- 114 (359)
T 3ieg_A 90 AEDDFKKVLKSNPSEQEEKEAESQ--------------L----------------------------------------- 114 (359)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHHHH--------------H-----------------------------------------
T ss_pred HHHHHHHHHhcCCcccChHHHHHH--------------H-----------------------------------------
Confidence 9999999976655 22111100 0
Q ss_pred ccccCCccccccccCCCCCCCCcccccccccCCCcccccccccccCCccccccccCCCCCCCCccccccccchhhccccC
Q 006562 199 DSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSS 278 (640)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (640)
T Consensus 115 -------------------------------------------------------------------------------- 114 (359)
T 3ieg_A 115 -------------------------------------------------------------------------------- 114 (359)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccCCCCCcccccccCCcccccccccccccccCccCCCCCCCCcccccccccCCCCCCchHHHHHhhHHHhhhhHHH
Q 006562 279 DDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKET 358 (640)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 358 (640)
..+.
T Consensus 115 -------------------------------------------------------------------~~~~--------- 118 (359)
T 3ieg_A 115 -------------------------------------------------------------------VKAD--------- 118 (359)
T ss_dssp -------------------------------------------------------------------HHHH---------
T ss_pred -------------------------------------------------------------------HHHH---------
Confidence 0000
Q ss_pred HHHHHhhHHHHHhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 006562 359 SNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDF 438 (640)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 438 (640)
....+..+|..+...|++++|+..++++++..|.++.++..+|.++...|++++|+..+
T Consensus 119 ---------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 177 (359)
T 3ieg_A 119 ---------------------EMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDL 177 (359)
T ss_dssp ---------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ---------------------HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 02235567889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH------------HHHHHHHhcCCHHHHHHHH
Q 006562 439 TEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILH------------ERGIVNFKFKDFNAAVEDL 506 (640)
Q Consensus 439 ~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~------------~la~~~~~~~~~~~A~~~~ 506 (640)
+++++..|.++.++..+|.++...|++++|+..++++++..|.+..++. .+|.++...|++++|+..+
T Consensus 178 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 257 (359)
T 3ieg_A 178 KAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKY 257 (359)
T ss_dssp HHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999987654 3488899999999999999
Q ss_pred HHHHHhCCCcHH----HHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Q 006562 507 SACVKLDKENKS----AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK 582 (640)
Q Consensus 507 ~~al~~~~~~~~----~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 582 (640)
++++...|+++. ++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..|+++++.+|
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p 337 (359)
T 3ieg_A 258 ESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNE 337 (359)
T ss_dssp HHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 999999999874 4667999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhcC
Q 006562 583 RFSKAYHLRGLLLHGLG 599 (640)
Q Consensus 583 ~~~~~~~~la~~~~~~g 599 (640)
+++.++..++.+....+
T Consensus 338 ~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 338 NDQQIREGLEKAQRLLK 354 (359)
T ss_dssp TCHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHH
Confidence 99999999988876544
No 11
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.7e-33 Score=295.39 Aligned_cols=261 Identities=19% Similarity=0.213 Sum_probs=249.8
Q ss_pred cccHHHHHHHHHHHHH---cCChHHHHHHHHHHHH-----h--C-------CCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 006562 378 SISVDFRLSRGIAQVN---EGKYASAISIFDQILK-----E--D-------PMYPEALIGRGTARAFQRELEAAISDFTE 440 (640)
Q Consensus 378 ~~~~~~~~~~a~~~~~---~g~~~~A~~~~~~~l~-----~--~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 440 (640)
|.++..++..|..++. .|++++|+..|+++++ . + |.++.++..+|.++...|++++|+..+++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 262 (514)
T 2gw1_A 183 SNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKK 262 (514)
T ss_dssp SCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5568899999999887 8999999999999999 5 4 44568899999999999999999999999
Q ss_pred HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHH
Q 006562 441 AIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAY 520 (640)
Q Consensus 441 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 520 (640)
++...|. ..++..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++...|.++.++
T Consensus 263 ~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 341 (514)
T 2gw1_A 263 AIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPY 341 (514)
T ss_dssp HHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHH
T ss_pred HHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHH
Confidence 9999999 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChH------HHHHHHHH
Q 006562 521 TYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSK------AYHLRGLL 594 (640)
Q Consensus 521 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~------~~~~la~~ 594 (640)
..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|.++. ++..+|.+
T Consensus 342 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~ 421 (514)
T 2gw1_A 342 IQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATL 421 (514)
T ss_dssp HHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999888755 99999999
Q ss_pred HHh---cCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCCccccc
Q 006562 595 LHG---LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAV 639 (640)
Q Consensus 595 ~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Al 639 (640)
+.. .|++++|+..|++++..+|+++.++..+|.++...|++++|+
T Consensus 422 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~ 469 (514)
T 2gw1_A 422 LTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAI 469 (514)
T ss_dssp HHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHH
Confidence 999 999999999999999999999999999999999999999885
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=1e-32 Score=294.58 Aligned_cols=246 Identities=18% Similarity=0.203 Sum_probs=231.1
Q ss_pred HcCChHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q 006562 393 NEGKYASAISIFDQILKEDPMYPE-------ALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGES 465 (640)
Q Consensus 393 ~~g~~~~A~~~~~~~l~~~~~~~~-------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 465 (640)
..|++++|+..|+++++.+|+++. ++..+|.++...|++++|+..+++++..+|. ..++..+|.++...|++
T Consensus 214 a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~ 292 (537)
T 3fp2_A 214 ANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENS 292 (537)
T ss_dssp HHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCC
T ss_pred HHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCH
Confidence 346899999999999999999865 5778889999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 006562 466 VEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ 545 (640)
Q Consensus 466 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 545 (640)
++|+..+++++...|.++.++..+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++.
T Consensus 293 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 372 (537)
T 3fp2_A 293 QEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKL 372 (537)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChH------HHHHHHHHHHhc----------CCHHHHHHHHH
Q 006562 546 LDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSK------AYHLRGLLLHGL----------GQHKKAIKDLS 609 (640)
Q Consensus 546 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~------~~~~la~~~~~~----------g~~~~A~~~~~ 609 (640)
..|.++.++..+|.++...|++++|+..|++++...|.+.. .+..+|.++... |++++|+..|+
T Consensus 373 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~ 452 (537)
T 3fp2_A 373 KFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLT 452 (537)
T ss_dssp HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHH
Confidence 99999999999999999999999999999999998875443 466778999999 99999999999
Q ss_pred HhhccCCCCHHHHHHHHHHHHHcCCccccc
Q 006562 610 SGLGIDPSNIECLYLRASCYHAIGEYREAV 639 (640)
Q Consensus 610 ~al~~~p~~~~~~~~la~~~~~~g~~~~Al 639 (640)
++++.+|++..++..+|.++..+|++++|+
T Consensus 453 ~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 482 (537)
T 3fp2_A 453 KACELDPRSEQAKIGLAQLKLQMEKIDEAI 482 (537)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHhccHHHHH
Confidence 999999999999999999999999999885
No 13
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.4e-30 Score=273.18 Aligned_cols=366 Identities=13% Similarity=0.027 Sum_probs=273.1
Q ss_pred HHHhcCCHHHHHHHHHHHHccc---------C-chhHHHhHHHHHHhhhcHHHHHHHHHHHHHcC--------CCchHHH
Q 006562 45 KLCSLRNWSKAIRILDSLLAQS---------Y-EIQDICNRAFCYSQLELHKHVIRDCDKALQLD--------PTLLQAY 106 (640)
Q Consensus 45 ~~~~~~~y~~Ai~~y~~ai~~~---------~-~~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~--------P~~~~a~ 106 (640)
-++..|+|++|+.+|++|+++. + ....|.|+|.+|..+|++++|+..+++++++. |..+.++
T Consensus 60 ~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~ 139 (472)
T 4g1t_A 60 LKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELD 139 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHH
Confidence 4478999999999999998762 2 22348899999999999999999999999874 4567889
Q ss_pred HHHHHHHHHcC--CHHHHHHHHHHHHhhccCChHHHHHHHhHHHHHHHHhhhccchhhhhhcccccccccccCCCCCCCc
Q 006562 107 ILKGCAFSALG--RKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDK 184 (640)
Q Consensus 107 ~~~g~~y~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (640)
..+|.++..+| ++++|+.+|++|+++.|+.+..+..+..+.-...
T Consensus 140 ~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~--------------------------------- 186 (472)
T 4g1t_A 140 CEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLD--------------------------------- 186 (472)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH---------------------------------
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc---------------------------------
Confidence 99998888765 6999999999999999988765433221110000
Q ss_pred chhhhhcCCCCCccccccCCccccccccCCCCCCCCcccccccccCCCcccccccccccCCccccccccCCCCCCCCccc
Q 006562 185 MSETSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKST 264 (640)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (640)
T Consensus 187 -------------------------------------------------------------------------------- 186 (472)
T 4g1t_A 187 -------------------------------------------------------------------------------- 186 (472)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccchhhccccCCcccccCCCCCcccccccCCcccccccccccccccCccCCCCCCCCcccccccccCCCCCCchHHH
Q 006562 265 HASRDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTES 344 (640)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 344 (640)
..++...++..
T Consensus 187 ---------------------------------------------------------------------~~~~~~~al~~ 197 (472)
T 4g1t_A 187 ---------------------------------------------------------------------NWPPSQNAIDP 197 (472)
T ss_dssp ---------------------------------------------------------------------HSCCCCCTHHH
T ss_pred ---------------------------------------------------------------------CchHHHHHHHH
Confidence 00112222222
Q ss_pred HHhhHHHhhhhHHHHHHHHhhHHHHHhhhhccCcccHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCCHHHHHH
Q 006562 345 RSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVN----EGKYASAISIFDQILKEDPMYPEALIG 420 (640)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~ 420 (640)
+ .+++..+|.++..+..+|..+.. .|++++|+..+++++..+|.++.++..
T Consensus 198 ~-------------------------~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~ 252 (472)
T 4g1t_A 198 L-------------------------RQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRS 252 (472)
T ss_dssp H-------------------------HHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHH
T ss_pred H-------------------------HHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHH
Confidence 2 22233467777777777766554 467889999999999999999999999
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-------------------CCHHHHHHHHHHHHHhCCC
Q 006562 421 RGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL-------------------GESVEAIQDLSKALEFEPN 481 (640)
Q Consensus 421 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-------------------~~~~~A~~~~~~al~~~p~ 481 (640)
+|.++...|++++|+..++++++.+|+++.++..+|.+|... +.+++|+..+++++..+|.
T Consensus 253 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~ 332 (472)
T 4g1t_A 253 AAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN 332 (472)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc
Confidence 999999999999999999999999999999999999988643 3468899999999999999
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHH---HHHHHHHH-HHHcCCHHHHHHHHHHHHccCcccHHHHHHH
Q 006562 482 SADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKS---AYTYLGLA-LSSIGEYKKAEEAHLKAIQLDRNFLEAWGHL 557 (640)
Q Consensus 482 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~---~~~~la~~-~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l 557 (640)
+..++..+|.++...|++++|+.+|++++...|++.. ++..+|.+ +...|++++|+..|.+++.+.|.+.....
T Consensus 333 ~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~-- 410 (472)
T 4g1t_A 333 LFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK-- 410 (472)
T ss_dssp TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH--
T ss_pred hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH--
Confidence 9999999999999999999999999999999887653 45566654 45689999999999999999998765332
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHH
Q 006562 558 TQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS 627 (640)
Q Consensus 558 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 627 (640)
....+..++++++..+|.++.++..+|.+|...|++++|+++|++++++.|.++.+...+|.
T Consensus 411 --------~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G~ 472 (472)
T 4g1t_A 411 --------MKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNGE 472 (472)
T ss_dssp --------HHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-------------------------
T ss_pred --------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCCC
Confidence 23455677889999999999999999999999999999999999999999999988877763
No 14
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=100.00 E-value=3.9e-30 Score=256.02 Aligned_cols=249 Identities=17% Similarity=0.180 Sum_probs=184.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q 006562 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQR-ELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGES 465 (640)
Q Consensus 387 ~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 465 (640)
++.++...|++++|+..++++++.+|.++.++..+|.++...| ++++|+.+|++++..+|.++.++..+|.++...|++
T Consensus 62 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 141 (330)
T 3hym_B 62 HIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEH 141 (330)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCH
Confidence 4455566666777777777777777777777777777777777 677777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 006562 466 VEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ 545 (640)
Q Consensus 466 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 545 (640)
++|+..+++++...|.+..++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++.
T Consensus 142 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 221 (330)
T 3hym_B 142 DQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALE 221 (330)
T ss_dssp HHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 77777777777777776667777777777777777777777777777777777777777777777777777777777776
Q ss_pred cC---------cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCC
Q 006562 546 LD---------RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP 616 (640)
Q Consensus 546 ~~---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 616 (640)
.. |..+.++..+|.++...|++++|+.+++++++..|+++.++..+|.++...|++++|+.+|+++++++|
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 301 (330)
T 3hym_B 222 KIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR 301 (330)
T ss_dssp HHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS
T ss_pred HhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC
Confidence 64 555677888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHH-HHcCCc
Q 006562 617 SNIECLYLRASCY-HAIGEY 635 (640)
Q Consensus 617 ~~~~~~~~la~~~-~~~g~~ 635 (640)
+++.++..++.++ ...|+.
T Consensus 302 ~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 302 DDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp CCHHHHHHHHHHHHTTTTC-
T ss_pred CchHHHHHHHHHHHHHhCch
Confidence 8888888888877 455543
No 15
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.97 E-value=1.8e-29 Score=264.84 Aligned_cols=262 Identities=17% Similarity=0.118 Sum_probs=182.6
Q ss_pred HHhhhhccCcccHHHHHHHHHHHHH---cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHH
Q 006562 369 CVTRISKSKSISVDFRLSRGIAQVN---EGKYASAISIFDQILKEDPMYPEALIGRGTARAF----QRELEAAISDFTEA 441 (640)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~a~~~~~---~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a 441 (640)
++.++...+|.++.++..+|.+++. .+++++|+..|+++++.+|+++.++..+|..+.. .|++++|+.+++++
T Consensus 160 ~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~a 239 (472)
T 4g1t_A 160 CFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEA 239 (472)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 5566666777777777777766443 4566777777777777777777777777765544 35666777777777
Q ss_pred HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc-------------------CCHHHH
Q 006562 442 IQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKF-------------------KDFNAA 502 (640)
Q Consensus 442 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-------------------~~~~~A 502 (640)
+..+|.++.++..+|.+|...|++++|+..++++++..|+++.++..+|.+|... +.++.|
T Consensus 240 l~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A 319 (472)
T 4g1t_A 240 LEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHA 319 (472)
T ss_dssp HHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHH
T ss_pred HHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHH
Confidence 7777777777777777777777777777777777777777777777777776542 235667
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHH---HHHHHHHH-HHHhcCHHHHHHHHHHHH
Q 006562 503 VEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE---AWGHLTQF-YQDLANSEKALECLQQVL 578 (640)
Q Consensus 503 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~---~~~~la~~-~~~~g~~~~A~~~~~~al 578 (640)
+..+++++..+|.+..++..+|.++...|++++|+.+|++++...|.... .+..+|.+ +...|++++|+..|++++
T Consensus 320 ~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal 399 (472)
T 4g1t_A 320 VAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGV 399 (472)
T ss_dssp HHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777665432 34455544 345677777777777777
Q ss_pred HhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCCcccccC
Q 006562 579 YIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAVI 640 (640)
Q Consensus 579 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Al~ 640 (640)
.+.|++...... ...+...+++++..+|+++.++..+|.+|..+|++++|+.
T Consensus 400 ~i~~~~~~~~~~----------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~ 451 (472)
T 4g1t_A 400 KINQKSREKEKM----------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADE 451 (472)
T ss_dssp HSCCCCHHHHHH----------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----
T ss_pred hcCcccHHHHHH----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 777766443222 2344556667777889999999999999999999999873
No 16
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.97 E-value=4.6e-30 Score=259.92 Aligned_cols=230 Identities=17% Similarity=0.169 Sum_probs=169.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHH---------
Q 006562 383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWK--------- 453 (640)
Q Consensus 383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~--------- 453 (640)
.++.+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++...|.+...+.
T Consensus 100 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (368)
T 1fch_A 100 AWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGA 179 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhh
Confidence 34445555555555555555555555555555555555555555555666666666655555555444332
Q ss_pred -------HHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 006562 454 -------RRGQARAALGESVEAIQDLSKALEFEPN--SADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLG 524 (640)
Q Consensus 454 -------~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la 524 (640)
.++.++ ..|++++|+..+++++...|. ++.++..+|.++...|++++|+..+++++..+|+++.++..+|
T Consensus 180 ~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~ 258 (368)
T 1fch_A 180 GLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLG 258 (368)
T ss_dssp ------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 355555 778888888888888888887 6778888888888888888888888888888888888888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-----------hHHHHHHHH
Q 006562 525 LALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF-----------SKAYHLRGL 593 (640)
Q Consensus 525 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-----------~~~~~~la~ 593 (640)
.++...|++++|+..|++++...|.++.++..+|.++...|++++|+.+|++++...|++ ..+|..+|.
T Consensus 259 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~ 338 (368)
T 1fch_A 259 ATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRL 338 (368)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHH
Confidence 888888888888888888888888888888888888888888888888888888877766 778888888
Q ss_pred HHHhcCCHHHHHHHHHHhhc
Q 006562 594 LLHGLGQHKKAIKDLSSGLG 613 (640)
Q Consensus 594 ~~~~~g~~~~A~~~~~~al~ 613 (640)
++..+|++++|...+.++++
T Consensus 339 ~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 339 ALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp HHHHHTCGGGHHHHHTTCHH
T ss_pred HHHHhCChHhHHHhHHHHHH
Confidence 88888888888888776664
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.97 E-value=3.2e-29 Score=249.41 Aligned_cols=266 Identities=14% Similarity=0.086 Sum_probs=254.4
Q ss_pred hccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHH
Q 006562 374 SKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWK 453 (640)
Q Consensus 374 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 453 (640)
....+.++..++.+|..++..|++++|+..|+++++.+|.++.++..++.++...|++++|+..++++++.+|.++.++.
T Consensus 15 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 94 (330)
T 3hym_B 15 VDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWF 94 (330)
T ss_dssp -----CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHH
T ss_pred HhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHH
Confidence 44566778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 006562 454 RRGQARAALG-ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE 532 (640)
Q Consensus 454 ~la~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~ 532 (640)
.+|.++...| ++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|.+...+..+|.++...|+
T Consensus 95 ~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 95 AVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhh
Confidence 9999999999 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---------CCChHHHHHHHHHHHhcCCHHH
Q 006562 533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYID---------KRFSKAYHLRGLLLHGLGQHKK 603 (640)
Q Consensus 533 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---------~~~~~~~~~la~~~~~~g~~~~ 603 (640)
+++|+..+++++...|.++.++..+|.++...|++++|+.++++++... |..+.++..+|.++...|++++
T Consensus 175 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 175 SKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 9999999999999999999999999999999999999999999999986 6678899999999999999999
Q ss_pred HHHHHHHhhccCCCCHHHHHHHHHHHHHcCCccccc
Q 006562 604 AIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAV 639 (640)
Q Consensus 604 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Al 639 (640)
|+.+++++++.+|++..++..+|.++..+|++++|+
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~ 290 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAV 290 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHH
Confidence 999999999999999999999999999999999885
No 18
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.97 E-value=2.1e-29 Score=254.76 Aligned_cols=262 Identities=16% Similarity=0.171 Sum_probs=241.5
Q ss_pred CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 006562 377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG 456 (640)
Q Consensus 377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 456 (640)
.+.++..++.+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|.++.++..+|
T Consensus 61 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 140 (365)
T 4eqf_A 61 PFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALA 140 (365)
T ss_dssp TTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 33456679999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH----------HHHHHHhcCCHHHHHHHHHHHHHhCCC--cHHHHHHHH
Q 006562 457 QARAALGESVEAIQDLSKALEFEPNSADILHE----------RGIVNFKFKDFNAAVEDLSACVKLDKE--NKSAYTYLG 524 (640)
Q Consensus 457 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~----------la~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~la 524 (640)
.++...|++++|+..+++++...|.+...+.. +|.++...|++++|+..+++++..+|. ++.++..+|
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 99999999999999999999999876655544 499999999999999999999999999 899999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHH
Q 006562 525 LALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKA 604 (640)
Q Consensus 525 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A 604 (640)
.++...|++++|+..|++++...|.++.++..+|.++...|++++|+..|++++...|+++.++..+|.++...|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCC------------CHHHHHHHHHHHHHcCCcccc
Q 006562 605 IKDLSSGLGIDPS------------NIECLYLRASCYHAIGEYREA 638 (640)
Q Consensus 605 ~~~~~~al~~~p~------------~~~~~~~la~~~~~~g~~~~A 638 (640)
+.+|++++++.|+ +..+|..++.++..+|+.+.|
T Consensus 301 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 346 (365)
T 4eqf_A 301 VSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELF 346 (365)
T ss_dssp HHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHH
Confidence 9999999999877 357899999999999998765
No 19
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.97 E-value=5.5e-29 Score=249.44 Aligned_cols=258 Identities=14% Similarity=0.085 Sum_probs=244.3
Q ss_pred hccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCcHHHH
Q 006562 374 SKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRE-LEAAISDFTEAIQSNPSAGEAW 452 (640)
Q Consensus 374 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~ 452 (640)
+..+|....++..+|.++...|++++|+..|++++..+|++..+|+.+|.++...|+ +++|+..|++++..+|++..+|
T Consensus 90 i~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~ 169 (382)
T 2h6f_A 90 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVW 169 (382)
T ss_dssp ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHH
Confidence 345677789999999999999999999999999999999999999999999999997 9999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cC
Q 006562 453 KRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS-IG 531 (640)
Q Consensus 453 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~g 531 (640)
+.+|.++..+|++++|+..|++++.++|++..+|+.+|.++...|++++|+.+++++++++|++..+|+.+|.++.. .|
T Consensus 170 ~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~ 249 (382)
T 2h6f_A 170 HHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTG 249 (382)
T ss_dssp HHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999 55
Q ss_pred CHHHH-----HHHHHHHHccCcccHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcC-----
Q 006562 532 EYKKA-----EEAHLKAIQLDRNFLEAWGHLTQFYQDLA--NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG----- 599 (640)
Q Consensus 532 ~~~~A-----~~~~~~a~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g----- 599 (640)
.+++| +.+|.+++.++|++..+|.+++.++...| ++++|+..+.++ +.+|+++.++..+|.+|..+|
T Consensus 250 ~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 250 YNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp SCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred cchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhccccc
Confidence 55777 59999999999999999999999999988 699999999998 899999999999999999975
Q ss_pred ----CHHHHHHHHHHh-hccCCCCHHHHHHHHHHHHHc
Q 006562 600 ----QHKKAIKDLSSG-LGIDPSNIECLYLRASCYHAI 632 (640)
Q Consensus 600 ----~~~~A~~~~~~a-l~~~p~~~~~~~~la~~~~~~ 632 (640)
.+++|+.+|+++ ++++|.....|..++..+..+
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 359999999999 999999999999999888654
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.97 E-value=1.1e-28 Score=249.84 Aligned_cols=258 Identities=20% Similarity=0.239 Sum_probs=247.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 006562 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (640)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 460 (640)
...++.+|..++..|++++|+..|+++++.+|.++.++..+|.++...|++++|+..|+++++.+|.++.++..+|.++.
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 143 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFT 143 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHH----------------HHHHHHHhcCCHHHHHHHHHHHHHhCCC--cHHHHHH
Q 006562 461 ALGESVEAIQDLSKALEFEPNSADILH----------------ERGIVNFKFKDFNAAVEDLSACVKLDKE--NKSAYTY 522 (640)
Q Consensus 461 ~~~~~~~A~~~~~~al~~~p~~~~~~~----------------~la~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~ 522 (640)
..|++++|+..+++++...|.+...+. .++.++ ..|++++|+..+++++...|. ++.++..
T Consensus 144 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~ 222 (368)
T 1fch_A 144 NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCG 222 (368)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHH
Confidence 999999999999999999998876654 466666 999999999999999999999 8999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHH
Q 006562 523 LGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHK 602 (640)
Q Consensus 523 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~ 602 (640)
+|.++...|++++|+..|++++...|.++.++..+|.++...|++++|+..|++++...|.++.++..+|.++...|+++
T Consensus 223 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~ 302 (368)
T 1fch_A 223 LGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHR 302 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCC-----------HHHHHHHHHHHHHcCCccccc
Q 006562 603 KAIKDLSSGLGIDPSN-----------IECLYLRASCYHAIGEYREAV 639 (640)
Q Consensus 603 ~A~~~~~~al~~~p~~-----------~~~~~~la~~~~~~g~~~~Al 639 (640)
+|+.+|++++.+.|++ ..+|..+|.++..+|++++|.
T Consensus 303 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 303 EAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350 (368)
T ss_dssp HHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence 9999999999999888 899999999999999999874
No 21
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.96 E-value=3.5e-28 Score=241.54 Aligned_cols=261 Identities=13% Similarity=0.132 Sum_probs=246.9
Q ss_pred ccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 006562 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQA 458 (640)
Q Consensus 379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 458 (640)
.++..++.+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|.+..++..+|.+
T Consensus 19 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 98 (327)
T 3cv0_A 19 MYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS 98 (327)
T ss_dssp GGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Confidence 35667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH--------------HH-HHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 006562 459 RAALGESVEAIQDLSKALEFEPNSADILHER--------------GI-VNFKFKDFNAAVEDLSACVKLDKENKSAYTYL 523 (640)
Q Consensus 459 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l--------------a~-~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l 523 (640)
+...|++++|+..+++++...|.+...+..+ +. ++...|++++|+..+++++...|.++.++..+
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 178 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASL 178 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 9999999999999999999999988777666 66 68899999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHH
Q 006562 524 GLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKK 603 (640)
Q Consensus 524 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~ 603 (640)
|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..++++++..|.++.++..+|.++...|++++
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDL 258 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCC------------CHHHHHHHHHHHHHcCCccccc
Q 006562 604 AIKDLSSGLGIDPS------------NIECLYLRASCYHAIGEYREAV 639 (640)
Q Consensus 604 A~~~~~~al~~~p~------------~~~~~~~la~~~~~~g~~~~Al 639 (640)
|+..+++++...|+ +..++..++.++..+|++++|.
T Consensus 259 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 306 (327)
T 3cv0_A 259 AAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVE 306 (327)
T ss_dssp HHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHH
Confidence 99999999999999 7899999999999999999874
No 22
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.96 E-value=1.5e-27 Score=241.13 Aligned_cols=169 Identities=18% Similarity=0.229 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHH----------HHHHHHccCHHHHHHHHHHHHHhCCC--c
Q 006562 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGR----------GTARAFQRELEAAISDFTEAIQSNPS--A 448 (640)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l----------a~~~~~~g~~~~A~~~~~~al~~~p~--~ 448 (640)
+..+..+|.++...|++++|+..|+++++..|.+..++..+ |.++...|++++|+.+++++++..|. +
T Consensus 133 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 212 (365)
T 4eqf_A 133 LKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMID 212 (365)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCC
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccC
Confidence 44566778888999999999999999999888766555444 66666666666666666666666666 5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 006562 449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALS 528 (640)
Q Consensus 449 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 528 (640)
+.++..+|.++...|++++|+..|+++++..|.++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++.
T Consensus 213 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 292 (365)
T 4eqf_A 213 PDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCI 292 (365)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HcCCHHHHHHHHHHHHccCcc
Q 006562 529 SIGEYKKAEEAHLKAIQLDRN 549 (640)
Q Consensus 529 ~~g~~~~A~~~~~~a~~~~~~ 549 (640)
..|++++|+..|++++...|.
T Consensus 293 ~~g~~~~A~~~~~~al~~~~~ 313 (365)
T 4eqf_A 293 NLGAYREAVSNFLTALSLQRK 313 (365)
T ss_dssp HHTCCHHHHHHHHHHHHHHHC
T ss_pred HCCCHHHHHHHHHHHHHhCcc
Confidence 666666666666666665554
No 23
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.95 E-value=3.9e-27 Score=227.43 Aligned_cols=253 Identities=15% Similarity=0.143 Sum_probs=228.4
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc----HHHHHHH
Q 006562 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA----GEAWKRR 455 (640)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l 455 (640)
+++.++..|..++..|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++ .|.+ ..++..+
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYY 80 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHH
Confidence 3567889999999999999999999999999999999999999999999999999999999999 4443 4468999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Q 006562 456 GQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKK 535 (640)
Q Consensus 456 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~ 535 (640)
|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++..+|.++.++..+|......+++++
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999955555679999
Q ss_pred HHHHHHHHHccCcccHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHhC---CC-----ChHHHHHHHHHHHhcCCHHHH
Q 006562 536 AEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN---SEKALECLQQVLYID---KR-----FSKAYHLRGLLLHGLGQHKKA 604 (640)
Q Consensus 536 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~---~~-----~~~~~~~la~~~~~~g~~~~A 604 (640)
|+..|++++..+|+++.++..+|.++...|+ +++|+..++++++.. |+ ...++..+|.++...|++++|
T Consensus 161 A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 161 ADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999999999999999999 999999999999876 44 236889999999999999999
Q ss_pred HHHHHHhhccCCCCHHHHHHHHHHHHHcC
Q 006562 605 IKDLSSGLGIDPSNIECLYLRASCYHAIG 633 (640)
Q Consensus 605 ~~~~~~al~~~p~~~~~~~~la~~~~~~g 633 (640)
+.+|+++++++|+++.++-.++.+....+
T Consensus 241 ~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 241 DAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 99999999999999999998888766544
No 24
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.95 E-value=7.4e-27 Score=234.01 Aligned_cols=181 Identities=12% Similarity=0.050 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 006562 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (640)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 460 (640)
+.+|+.+|.++...|++++|+..|+++++++|++..+|+.+|.++...|++++|+.+|+++++.+|.+..+|..+|.++.
T Consensus 166 ~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~ 245 (382)
T 2h6f_A 166 YQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVIS 245 (382)
T ss_dssp HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred H-cCCHHHH-----HHHHHHHHHhCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-
Q 006562 461 A-LGESVEA-----IQDLSKALEFEPNSADILHERGIVNFKFK--DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIG- 531 (640)
Q Consensus 461 ~-~~~~~~A-----~~~~~~al~~~p~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g- 531 (640)
. .|.+++| +.+|++++.++|++..+|..++.++...| ++++|+..+.++ +.+|+++.++..+|.++..+|
T Consensus 246 ~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~ 324 (382)
T 2h6f_A 246 NTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLE 324 (382)
T ss_dssp HTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHH
T ss_pred HhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhc
Confidence 5 3332444 34555555555555555555555555544 345555555444 444555555555555554442
Q ss_pred --------CHHHHHHHHHHH-HccCcccHHHHHHHHHHHH
Q 006562 532 --------EYKKAEEAHLKA-IQLDRNFLEAWGHLTQFYQ 562 (640)
Q Consensus 532 --------~~~~A~~~~~~a-~~~~~~~~~~~~~la~~~~ 562 (640)
.+++|+.+|+++ ++.+|.....|..++..+.
T Consensus 325 ~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 325 NQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 124455555554 4555555555544444443
No 25
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.95 E-value=1.5e-26 Score=229.62 Aligned_cols=197 Identities=14% Similarity=0.181 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHH--------------HH-HHHHccCHHHHHHHHHHHHHhCC
Q 006562 382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGR--------------GT-ARAFQRELEAAISDFTEAIQSNP 446 (640)
Q Consensus 382 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l--------------a~-~~~~~g~~~~A~~~~~~al~~~p 446 (640)
..+..+|.++...|++++|+..+++++..+|.+...+..+ +. ++...|++++|+..++++++..|
T Consensus 90 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 169 (327)
T 3cv0_A 90 AVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP 169 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC
Confidence 3455667777788888888888888888877766655554 33 34455555555555555555555
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 006562 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA 526 (640)
Q Consensus 447 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~ 526 (640)
.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..++++++..|.++.++..+|.+
T Consensus 170 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 249 (327)
T 3cv0_A 170 NDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVS 249 (327)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHcCCHHHHHHHHHHHHccCcc------------cHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 006562 527 LSSIGEYKKAEEAHLKAIQLDRN------------FLEAWGHLTQFYQDLANSEKALECLQQVL 578 (640)
Q Consensus 527 ~~~~g~~~~A~~~~~~a~~~~~~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al 578 (640)
+...|++++|+..+++++...|. .+.++..+|.++...|++++|...+++++
T Consensus 250 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 250 YSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 55555555555555555555544 44445555555555555555554444443
No 26
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.7e-26 Score=220.90 Aligned_cols=241 Identities=17% Similarity=0.161 Sum_probs=230.1
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc-------HHHH
Q 006562 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA-------GEAW 452 (640)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~ 452 (640)
.+..+..+|..++..|++++|+..|+++++.+ .++.++..+|.++...|++++|+..++++++..|.+ +.++
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 47789999999999999999999999999999 889999999999999999999999999999998876 7899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 006562 453 KRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE 532 (640)
Q Consensus 453 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~ 532 (640)
..+|.++...|++++|+..+++++...|. +.++...|++++|+..+++++..+|.++.++..+|.++...|+
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999986 5677888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 006562 533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGL 612 (640)
Q Consensus 533 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 612 (640)
+++|+..+++++..+|.++.++..+|.++...|++++|+..++++++..|+++.++..+|.++...|++++|+.+|++++
T Consensus 155 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAAR 234 (258)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC------CCCHHHHHHHHHHH
Q 006562 613 GID------PSNIECLYLRASCY 629 (640)
Q Consensus 613 ~~~------p~~~~~~~~la~~~ 629 (640)
+++ |++..++..++.++
T Consensus 235 ~~~~~~~~~p~~~~~~~~l~~~~ 257 (258)
T 3uq3_A 235 TKDAEVNNGSSAREIDQLYYKAS 257 (258)
T ss_dssp HHHHHHHTTTTHHHHHHHHHHTT
T ss_pred HhChhhcCCCchHHHHHHHHHhh
Confidence 999 99888888877653
No 27
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.95 E-value=7e-24 Score=222.95 Aligned_cols=357 Identities=15% Similarity=0.026 Sum_probs=293.0
Q ss_pred HHHHHHHHHH-h----cCCHHHHHHHHHHHHcccCchhHHHhHHHHHHh----hhcHHHHHHHHHHHHHcCCCchHHHHH
Q 006562 38 TARIELAKLC-S----LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQ----LELHKHVIRDCDKALQLDPTLLQAYIL 108 (640)
Q Consensus 38 ~~~~~~~~~~-~----~~~y~~Ai~~y~~ai~~~~~~~~~~~~A~~~~~----~g~~~~Ai~~~~~al~~~P~~~~a~~~ 108 (640)
.....++.+| . .+|+++|+.+|+++++. .++.+++.+|.+|.. .+++++|+..++++++. .++.+++.
T Consensus 40 ~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~ 116 (490)
T 2xm6_A 40 KAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ-GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQN 116 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHH
Confidence 3345566555 4 68999999999999987 456788999999999 99999999999999875 57899999
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHhhccCChHHHHHHHhHHHHHHHHhhhccchhhhhhcccccccccccCCCCCCCc
Q 006562 109 KGCAFSA----LGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDK 184 (640)
Q Consensus 109 ~g~~y~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (640)
+|.+|.. .+++++|+..|+++.+.. .+.....+..+. ..+
T Consensus 117 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y---------------~~g------------------- 160 (490)
T 2xm6_A 117 LGVMYHEGNGVKVDKAESVKWFRLAAEQG--RDSGQQSMGDAY---------------FEG------------------- 160 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHH---------------HHT-------------------
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHH---------------HcC-------------------
Confidence 9999999 899999999999995532 222111110000 000
Q ss_pred chhhhhcCCCCCccccccCCccccccccCCCCCCCCcccccccccCCCcccccccccccCCccccccccCCCCCCCCccc
Q 006562 185 MSETSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKST 264 (640)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (640)
.+
T Consensus 161 ------------------------------------------------------~g------------------------ 162 (490)
T 2xm6_A 161 ------------------------------------------------------DG------------------------ 162 (490)
T ss_dssp ------------------------------------------------------SS------------------------
T ss_pred ------------------------------------------------------CC------------------------
Confidence 00
Q ss_pred cccccchhhccccCCcccccCCCCCcccccccCCcccccccccccccccCccCCCCCCCCcccccccccCCCCCCchHHH
Q 006562 265 HASRDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTES 344 (640)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 344 (640)
..+++..++..
T Consensus 163 ---------------------------------------------------------------------~~~d~~~A~~~ 173 (490)
T 2xm6_A 163 ---------------------------------------------------------------------VTRDYVMAREW 173 (490)
T ss_dssp ---------------------------------------------------------------------SCCCHHHHHHH
T ss_pred ---------------------------------------------------------------------CCCCHHHHHHH
Confidence 00112233322
Q ss_pred HHhhHHHhhhhHHHHHHHHhhHHHHHhhhhccCcccHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCCHHHHHH
Q 006562 345 RSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVN----EGKYASAISIFDQILKEDPMYPEALIG 420 (640)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~ 420 (640)
+.+ ... ..++..++.+|.++.. .+++++|+.+|+++.+. .++.+++.
T Consensus 174 ~~~-------------------------a~~--~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~ 224 (490)
T 2xm6_A 174 YSK-------------------------AAE--QGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLH 224 (490)
T ss_dssp HHH-------------------------HHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHH
T ss_pred HHH-------------------------HHH--CCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHH
Confidence 222 111 2468899999999998 89999999999999875 46899999
Q ss_pred HHHHHHH----ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 006562 421 RGTARAF----QRELEAAISDFTEAIQSNPSAGEAWKRRGQARAA----LGESVEAIQDLSKALEFEPNSADILHERGIV 492 (640)
Q Consensus 421 la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 492 (640)
+|.+|.. .+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++.+. .++.+++.+|.+
T Consensus 225 lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~ 300 (490)
T 2xm6_A 225 LADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHL 300 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHH
Confidence 9999997 89999999999999875 568899999999998 89999999999999876 578899999999
Q ss_pred HHhc-----CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHccCcccHHHHHHHHHHHHH-
Q 006562 493 NFKF-----KDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIG---EYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD- 563 (640)
Q Consensus 493 ~~~~-----~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~- 563 (640)
+... +++++|+.+|+++.+. .++.+++.+|.++...| ++++|+.+|+++++. .++.+++.+|.+|..
T Consensus 301 y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g 376 (490)
T 2xm6_A 301 YDKGAEGVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQG 376 (490)
T ss_dssp HHHCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHT
T ss_pred HHcCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcC
Confidence 9988 8999999999999886 56789999999999866 899999999999987 578999999999999
Q ss_pred ---hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHhhccCCCCH
Q 006562 564 ---LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG----LGQHKKAIKDLSSGLGIDPSNI 619 (640)
Q Consensus 564 ---~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~ 619 (640)
.+++++|+.+|+++.+. .++.++..+|.+|.. .+++++|+.+|+++++..|+.+
T Consensus 377 ~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~ 437 (490)
T 2xm6_A 377 KGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLF 437 (490)
T ss_dssp SSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHH
T ss_pred CCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCc
Confidence 89999999999999875 468999999999998 8999999999999999987633
No 28
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.95 E-value=3.2e-26 Score=212.39 Aligned_cols=199 Identities=17% Similarity=0.136 Sum_probs=109.0
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 006562 412 PMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGI 491 (640)
Q Consensus 412 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 491 (640)
|.++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|+++.++..+|.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 33444455555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHhc-----------CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHH
Q 006562 492 VNFKF-----------KDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQF 560 (640)
Q Consensus 492 ~~~~~-----------~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 560 (640)
++... |++++|+..++++++.+|+++.++..+|.++...|++++|+..|++++..+ +++.++..+|.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~ 160 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAEL 160 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHH
Confidence 55555 666666666666666666666666666666666666666666666666666 666666666666
Q ss_pred HHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 006562 561 YQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSG 611 (640)
Q Consensus 561 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 611 (640)
+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++
T Consensus 161 ~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 161 YLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 666666666666666666666666666666666666666666666666554
No 29
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.95 E-value=4.7e-26 Score=211.28 Aligned_cols=200 Identities=20% Similarity=0.211 Sum_probs=180.9
Q ss_pred cccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 006562 378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQ 457 (640)
Q Consensus 378 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 457 (640)
|.++..++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 66788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHc-----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 006562 458 ARAAL-----------GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA 526 (640)
Q Consensus 458 ~~~~~-----------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~ 526 (640)
++... |++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++++ +++.++..+|.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~ 160 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAEL 160 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHH
Confidence 99999 999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 006562 527 LSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVL 578 (640)
Q Consensus 527 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 578 (640)
+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++.
T Consensus 161 ~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 161 YLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999998764
No 30
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.94 E-value=1.9e-23 Score=222.01 Aligned_cols=207 Identities=10% Similarity=-0.007 Sum_probs=189.1
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHH-hCCCCHHHHHHHHHHHHhc
Q 006562 432 EAAISDFTEAIQSNPSAGEAWKRRGQARAA-------LGESV-------EAIQDLSKALE-FEPNSADILHERGIVNFKF 496 (640)
Q Consensus 432 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~-------~~~~~-------~A~~~~~~al~-~~p~~~~~~~~la~~~~~~ 496 (640)
..++..|++++...|.++.+|..+|..+.. .|+++ +|+..|+++++ ..|++..+|..++.++...
T Consensus 255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 478899999999999999999999999986 79987 99999999997 8999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHH-HHHhcCHHHHHHHH
Q 006562 497 KDFNAAVEDLSACVKLDKENK-SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQF-YQDLANSEKALECL 574 (640)
Q Consensus 497 ~~~~~A~~~~~~al~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~ 574 (640)
|++++|...|+++++..|.++ .+|..++.++...|++++|...|++++...|.....+...+.+ +...|++++|..+|
T Consensus 335 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~ 414 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIF 414 (530)
T ss_dssp TCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHH
Confidence 999999999999999999985 6999999999999999999999999999988877777766665 34689999999999
Q ss_pred HHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCH----HHHHHHHHHHHHcCCcccc
Q 006562 575 QQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI----ECLYLRASCYHAIGEYREA 638 (640)
Q Consensus 575 ~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A 638 (640)
+++++..|+++.+|..++.++...|++++|...|++++...|.++ .+|...+......|+.+.+
T Consensus 415 e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~ 482 (530)
T 2ooe_A 415 ELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASI 482 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999999999999999999999999999876654 4888888888888987765
No 31
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.94 E-value=5.7e-23 Score=218.27 Aligned_cols=220 Identities=8% Similarity=-0.030 Sum_probs=203.0
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------ccCHH-------HHHHHHHHHHH-hCCCcHHHHHHHHHHHHHc
Q 006562 398 ASAISIFDQILKEDPMYPEALIGRGTARAF-------QRELE-------AAISDFTEAIQ-SNPSAGEAWKRRGQARAAL 462 (640)
Q Consensus 398 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~-------~g~~~-------~A~~~~~~al~-~~p~~~~~~~~la~~~~~~ 462 (640)
..++..|++++..+|.++.+|+.+|..+.. .|+++ +|+..|+++++ ..|++..+|..+|.++...
T Consensus 255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 478899999999999999999999999986 79977 99999999997 7999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH-HHHcCCHHHHHHHH
Q 006562 463 GESVEAIQDLSKALEFEPNSA-DILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA-LSSIGEYKKAEEAH 540 (640)
Q Consensus 463 ~~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~ 540 (640)
|++++|...|+++++..|.++ .+|..++.++...|++++|...|+++++..|.....+...+.+ +...|++++|...|
T Consensus 335 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~ 414 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIF 414 (530)
T ss_dssp TCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHH
Confidence 999999999999999999885 6999999999999999999999999999998887777776666 34589999999999
Q ss_pred HHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChH----HHHHHHHHHHhcCCHHHHHHHHHHhhccCC
Q 006562 541 LKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSK----AYHLRGLLLHGLGQHKKAIKDLSSGLGIDP 616 (640)
Q Consensus 541 ~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p 616 (640)
+++++..|+++.+|..++.++...|+.++|..+|++++...|.++. +|...+......|+.+.+..++.++++..|
T Consensus 415 e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 415 ELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 9999999999999999999999999999999999999998765544 888888889999999999999999999988
Q ss_pred C
Q 006562 617 S 617 (640)
Q Consensus 617 ~ 617 (640)
+
T Consensus 495 ~ 495 (530)
T 2ooe_A 495 E 495 (530)
T ss_dssp H
T ss_pred h
Confidence 5
No 32
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.94 E-value=5.2e-23 Score=216.26 Aligned_cols=357 Identities=15% Similarity=-0.003 Sum_probs=286.2
Q ss_pred HHHHHHHHH-h----cCCHHHHHHHHHHHHcccCchhHHHhHHHHHHh----hhcHHHHHHHHHHHHHcCCCchHHHHHH
Q 006562 39 ARIELAKLC-S----LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQ----LELHKHVIRDCDKALQLDPTLLQAYILK 109 (640)
Q Consensus 39 ~~~~~~~~~-~----~~~y~~Ai~~y~~ai~~~~~~~~~~~~A~~~~~----~g~~~~Ai~~~~~al~~~P~~~~a~~~~ 109 (640)
....++.++ . .+|+++|+.+|+++++.+ ++.+++++|.+|.. .+++++|+..++++++. +++.+++.+
T Consensus 77 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~L 153 (490)
T 2xm6_A 77 AEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG-LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSM 153 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHH
Confidence 345566555 4 789999999999999875 56778899999999 89999999999999875 579999999
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHhhccCChHHHHHHHhHHHHHHHHhhhccchhhhhhcccccccccccCCCCCCCcc
Q 006562 110 GCAFSA----LGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKM 185 (640)
Q Consensus 110 g~~y~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (640)
|.+|.. .+++++|+..|+++++.. .+.....+..+. ..+
T Consensus 154 g~~y~~g~g~~~d~~~A~~~~~~a~~~~--~~~a~~~Lg~~y---------------~~g-------------------- 196 (490)
T 2xm6_A 154 GDAYFEGDGVTRDYVMAREWYSKAAEQG--NVWSCNQLGYMY---------------SRG-------------------- 196 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHH---------------HHT--------------------
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHH---------------hcC--------------------
Confidence 999998 899999999999996542 221111110000 000
Q ss_pred hhhhhcCCCCCccccccCCccccccccCCCCCCCCcccccccccCCCcccccccccccCCccccccccCCCCCCCCcccc
Q 006562 186 SETSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTH 265 (640)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (640)
.
T Consensus 197 -------------------------------------------------------~------------------------ 197 (490)
T 2xm6_A 197 -------------------------------------------------------L------------------------ 197 (490)
T ss_dssp -------------------------------------------------------S------------------------
T ss_pred -------------------------------------------------------C------------------------
Confidence 0
Q ss_pred ccccchhhccccCCcccccCCCCCcccccccCCcccccccccccccccCccCCCCCCCCcccccccccCCCCCCchHHHH
Q 006562 266 ASRDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESR 345 (640)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 345 (640)
-..++++.+...+
T Consensus 198 -------------------------------------------------------------------g~~~~~~~A~~~~ 210 (490)
T 2xm6_A 198 -------------------------------------------------------------------GVERNDAISAQWY 210 (490)
T ss_dssp -------------------------------------------------------------------SSCCCHHHHHHHH
T ss_pred -------------------------------------------------------------------CCCcCHHHHHHHH
Confidence 0011223333332
Q ss_pred HhhHHHhhhhHHHHHHHHhhHHHHHhhhhccCcccHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCCHHHHHHH
Q 006562 346 SKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVN----EGKYASAISIFDQILKEDPMYPEALIGR 421 (640)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~l 421 (640)
.+. . ...++..++.+|.++.. .+++++|+.+|+++.+. .++.+++.+
T Consensus 211 ~~a-------------------------~--~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~l 261 (490)
T 2xm6_A 211 RKS-------------------------A--TSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRL 261 (490)
T ss_dssp HHH-------------------------H--HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHH
T ss_pred HHH-------------------------H--HCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHH
Confidence 221 1 12467889999999997 89999999999999875 568999999
Q ss_pred HHHHHH----ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 006562 422 GTARAF----QRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL-----GESVEAIQDLSKALEFEPNSADILHERGIV 492 (640)
Q Consensus 422 a~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 492 (640)
|.+|.. .+++++|+.+|+++.+. .++.+++.+|.+|... +++++|+.+|+++.+. .++.+++.+|.+
T Consensus 262 g~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~ 337 (490)
T 2xm6_A 262 GYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDATAQANLGAI 337 (490)
T ss_dssp HHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHH
Confidence 999999 89999999999999865 5788999999999998 9999999999999987 467899999999
Q ss_pred HHhcC---CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHH--
Q 006562 493 NFKFK---DFNAAVEDLSACVKLDKENKSAYTYLGLALSS----IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD-- 563 (640)
Q Consensus 493 ~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-- 563 (640)
|...| ++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++.+.. ++.++..+|.+|..
T Consensus 338 y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~ 413 (490)
T 2xm6_A 338 YFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGL 413 (490)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTS
T ss_pred HHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCC
Confidence 99866 899999999999987 679999999999999 899999999999999864 68999999999999
Q ss_pred --hcCHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHH
Q 006562 564 --LANSEKALECLQQVLYIDK---RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE 620 (640)
Q Consensus 564 --~g~~~~A~~~~~~al~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 620 (640)
.+++++|+.+|+++++..| .++.+...+|.++.. +...|.....+.++..|+...
T Consensus 414 g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~--~~~~a~~~a~~~~~~~~~~~~ 473 (490)
T 2xm6_A 414 GVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK--QLQQAELLSQQYIEKYAPEAW 473 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH--HHHHHHHHHHHHHHHHCHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh--HHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999984 488888888887664 445555555555555565443
No 33
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.94 E-value=4.8e-24 Score=206.83 Aligned_cols=217 Identities=11% Similarity=0.020 Sum_probs=144.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 006562 383 FRLSRGIAQVNEGKYASAISIFDQILKE--DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (640)
Q Consensus 383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 460 (640)
.+..++..+...|++++|++.+++++.. +|+++.+++.+|.++...|++++|+..+++ |.+..++..+|.++.
T Consensus 67 a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~ 141 (291)
T 3mkr_A 67 AVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILL 141 (291)
T ss_dssp HHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHH
Confidence 3344566666666777777777776664 477777777777777777777777777766 666777777777777
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 006562 461 ALGESVEAIQDLSKALEFEPNSADILHERG--IVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEE 538 (640)
Q Consensus 461 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la--~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~ 538 (640)
.+|++++|+..++++++.+|++.......+ .++...|++++|+..|++++...|+++.+++.+|.++...|++++|+.
T Consensus 142 ~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~ 221 (291)
T 3mkr_A 142 KLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEG 221 (291)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 777777777777777777776654333322 233344667777777777777777777777777777777777777777
Q ss_pred HHHHHHccCcccHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 006562 539 AHLKAIQLDRNFLEAWGHLTQFYQDLANSEK-ALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL 608 (640)
Q Consensus 539 ~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 608 (640)
.|++++..+|+++.++.++|.++...|++++ +..+++++++.+|+++.+.. +..+.+.++++..-|
T Consensus 222 ~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d----~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 222 VLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE----YRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH----HHHHHHHHHHHHHHc
Confidence 7777777777777777777777777777655 45666777777777766542 333444444444433
No 34
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.93 E-value=2.4e-24 Score=207.85 Aligned_cols=182 Identities=18% Similarity=0.081 Sum_probs=144.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 006562 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (640)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 460 (640)
...++.+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++.+|.++.++..+|...+
T Consensus 74 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 153 (272)
T 3u4t_A 74 SADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYY 153 (272)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHH
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999994444
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHhC---CCc-----HHHHHHHHHHHHH
Q 006562 461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKD---FNAAVEDLSACVKLD---KEN-----KSAYTYLGLALSS 529 (640)
Q Consensus 461 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~---~~~-----~~~~~~la~~~~~ 529 (640)
..+++++|+..|+++++..|.+..++..+|.++...|+ +++|+..++++++.. |+. ..++..+|.++..
T Consensus 154 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 233 (272)
T 3u4t_A 154 YNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTI 233 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH
Confidence 55688888888888888888888888888888888887 778888888888765 331 2456666777777
Q ss_pred cCCHHHHHHHHHHHHccCcccHHHHHHHHHHHH
Q 006562 530 IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQ 562 (640)
Q Consensus 530 ~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 562 (640)
.|++++|+.+|++++..+|+++.++..++.+..
T Consensus 234 ~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~ 266 (272)
T 3u4t_A 234 NRDKVKADAAWKNILALDPTNKKAIDGLKMKLE 266 (272)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHC----
T ss_pred cCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhc
Confidence 777777777777777777776666666655543
No 35
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.93 E-value=1.5e-23 Score=203.29 Aligned_cols=253 Identities=11% Similarity=-0.007 Sum_probs=220.8
Q ss_pred hccCccc-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCcHH
Q 006562 374 SKSKSIS-VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS--NPSAGE 450 (640)
Q Consensus 374 ~~~~~~~-~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~ 450 (640)
...+|.+ .+..+.++.+++..|+++.|+..++. .+|....++..++..+...|++++|+..+++++.. +|+++.
T Consensus 26 ~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~ 102 (291)
T 3mkr_A 26 KPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTT 102 (291)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHH
T ss_pred ccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHH
Confidence 3444554 45667889999999999999998866 25556788889999999999999999999999876 599999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHH--HHHH
Q 006562 451 AWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLG--LALS 528 (640)
Q Consensus 451 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la--~~~~ 528 (640)
+++.+|.++...|++++|+..+++ |.+..++..+|.++..+|++++|+..++++++.+|++.......+ .++.
T Consensus 103 ~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~ 177 (291)
T 3mkr_A 103 FLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAA 177 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHh
Confidence 999999999999999999999998 889999999999999999999999999999999999875554444 3334
Q ss_pred HcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHH-HHHH
Q 006562 529 SIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKK-AIKD 607 (640)
Q Consensus 529 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~-A~~~ 607 (640)
..|++++|+..|++++...|.++.+++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|++.+ +..+
T Consensus 178 ~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~ 257 (291)
T 3mkr_A 178 GGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRY 257 (291)
T ss_dssp CTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 458999999999999999999999999999999999999999999999999999999999999999999999976 5789
Q ss_pred HHHhhccCCCCHHHHHHHHHHHHHcCCcccc
Q 006562 608 LSSGLGIDPSNIECLYLRASCYHAIGEYREA 638 (640)
Q Consensus 608 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 638 (640)
++++++++|+++.+.. +..+.+.|++|
T Consensus 258 ~~~~~~~~P~~~~~~d----~~~~~~~fd~~ 284 (291)
T 3mkr_A 258 LSQLKDAHRSHPFIKE----YRAKENDFDRL 284 (291)
T ss_dssp HHHHHHHCTTCHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHhCCCChHHHH----HHHHHHHHHHH
Confidence 9999999999987653 34444444443
No 36
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.93 E-value=2.9e-24 Score=220.15 Aligned_cols=223 Identities=20% Similarity=0.202 Sum_probs=191.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccC--------------------HHHH
Q 006562 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY------PEALIGRGTARAFQRE--------------------LEAA 434 (640)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~------~~~~~~la~~~~~~g~--------------------~~~A 434 (640)
+..+..+|.++...|++++|+..+++++...|.. ..++..+|.++...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 5567789999999999999999999999876543 5589999999999999 9999
Q ss_pred HHHHHHHHHh------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHhcCCHHHH
Q 006562 435 ISDFTEAIQS------NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA------DILHERGIVNFKFKDFNAA 502 (640)
Q Consensus 435 ~~~~~~al~~------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~~~~~~A 502 (640)
+.++.+++.. .|....++..+|.++...|++++|+.++++++...|... .++..+|.++...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 9999999876 233456889999999999999999999999998866543 3889999999999999999
Q ss_pred HHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccc------HHHHHHHHHHHHHhcCHHHH
Q 006562 503 VEDLSACVKLDKEN------KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF------LEAWGHLTQFYQDLANSEKA 570 (640)
Q Consensus 503 ~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~g~~~~A 570 (640)
+.++++++...|.. ..++..+|.++...|++++|+..+++++...+.. ..++..+|.++...|++++|
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999887654 6788899999999999999999999999875443 67888999999999999999
Q ss_pred HHHHHHHHHhCC------CChHHHHHHHHHHHhcCCHHH
Q 006562 571 LECLQQVLYIDK------RFSKAYHLRGLLLHGLGQHKK 603 (640)
Q Consensus 571 ~~~~~~al~~~~------~~~~~~~~la~~~~~~g~~~~ 603 (640)
+.+++++++..+ ....++..+|.++...|+...
T Consensus 327 ~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 327 MHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 999999988743 335678889999998887643
No 37
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.93 E-value=3.9e-24 Score=202.43 Aligned_cols=218 Identities=22% Similarity=0.221 Sum_probs=117.2
Q ss_pred ccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 006562 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQA 458 (640)
Q Consensus 379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 458 (640)
..+..++.+|..++..|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++..|.+..++..+|.+
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 100 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNV 100 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 34455566666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 006562 459 RAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEE 538 (640)
Q Consensus 459 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~ 538 (640)
+...|++++|+..++++++..|.+..++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+.
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 180 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALS 180 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHH
Confidence 66666666666666666666666666666666666666666666666666666555555555555555555555555555
Q ss_pred HHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 006562 539 AHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLH 596 (640)
Q Consensus 539 ~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 596 (640)
.+++++...|.++.++..+|.++...|++++|+.+++++++.+|+++.++..++.+..
T Consensus 181 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~ 238 (243)
T 2q7f_A 181 QFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGH 238 (243)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC---
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHh
Confidence 5555555555555555555555555555555555555555555555555555444433
No 38
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.93 E-value=4.6e-24 Score=201.99 Aligned_cols=221 Identities=19% Similarity=0.154 Sum_probs=191.4
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006562 414 YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVN 493 (640)
Q Consensus 414 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 493 (640)
.+..++.+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..+++++...|.+..++..+|.++
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVY 101 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 006562 494 FKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALEC 573 (640)
Q Consensus 494 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 573 (640)
...|++++|+..++++++..|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 181 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQ 181 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCC
Q 006562 574 LQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGE 634 (640)
Q Consensus 574 ~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 634 (640)
+++++...|.++.++..+|.++...|++++|+.+++++++.+|++..++..++.+....|+
T Consensus 182 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~ 242 (243)
T 2q7f_A 182 FAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHHH 242 (243)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-------
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhccC
Confidence 9999999999999999999999999999999999999999999999999998887765553
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.2e-23 Score=201.02 Aligned_cols=217 Identities=17% Similarity=0.176 Sum_probs=208.6
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHH
Q 006562 414 YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS-------ADIL 486 (640)
Q Consensus 414 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~ 486 (640)
.+..+..+|.++...|++++|+.+|+++++.+ .++.++..+|.++...|++++|+..+++++...|.+ +.++
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 46789999999999999999999999999999 899999999999999999999999999999998876 7899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcC
Q 006562 487 HERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN 566 (640)
Q Consensus 487 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~ 566 (640)
..+|.++...|++++|+..+++++...|. +.++...|++++|+..+++++..+|..+.++..+|.++...|+
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999987 5677888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCCccccc
Q 006562 567 SEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAV 639 (640)
Q Consensus 567 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Al 639 (640)
+++|+..+++++...|.++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++..+|++++|+
T Consensus 155 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~ 227 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASAL 227 (258)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999885
No 40
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.92 E-value=5.5e-24 Score=205.55 Aligned_cols=243 Identities=18% Similarity=0.151 Sum_probs=189.2
Q ss_pred HHcCChHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Q 006562 392 VNEGKYASAISIFDQILKED----PMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVE 467 (640)
Q Consensus 392 ~~~g~~~~A~~~~~~~l~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~ 467 (640)
...|++++|+..|+++++.. |.++.+++.+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHH
Confidence 34577888888888888763 34567788888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 006562 468 AIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD 547 (640)
Q Consensus 468 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 547 (640)
|+..|++++...|.+..++..+|.++...|++++|+..+++++...|++.......+.. ...|++++|+..+.+++...
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHHHHhcC
Confidence 88888888888888888888888888888888888888888888888887666555544 55688888888888888877
Q ss_pred cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHH
Q 006562 548 RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKR----FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLY 623 (640)
Q Consensus 548 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 623 (640)
|.+...+. ++.++...++.++|+..+.+++...|. ++.++..+|.++...|++++|+.+|++++..+|++...
T Consensus 175 ~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~-- 251 (275)
T 1xnf_A 175 DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE-- 251 (275)
T ss_dssp CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH--
T ss_pred CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH--
Confidence 77655543 666677777788888888888766553 35778888888888888888888888888888876433
Q ss_pred HHHHHHHHcCCccccc
Q 006562 624 LRASCYHAIGEYREAV 639 (640)
Q Consensus 624 ~la~~~~~~g~~~~Al 639 (640)
.+.++..+|++++|+
T Consensus 252 -~~~~~~~l~~~~~a~ 266 (275)
T 1xnf_A 252 -HRYALLELSLLGQDQ 266 (275)
T ss_dssp -HHHHHHHHHHHHHC-
T ss_pred -HHHHHHHHHHHHhhH
Confidence 366777777777775
No 41
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.92 E-value=3e-24 Score=220.69 Aligned_cols=262 Identities=18% Similarity=0.151 Sum_probs=231.6
Q ss_pred cccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCC
Q 006562 378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP----EALIGRGTARAFQRELEAAISDFTEAIQS------NPS 447 (640)
Q Consensus 378 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~ 447 (640)
+.....++.+|..++..|++++|+..|+++++..|.++ .++..+|.++...|++++|+.++++++.. .|.
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 124 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG 124 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH
Confidence 34466778899999999999999999999999999987 58899999999999999999999999987 466
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHhcCC-----------------HHHHHH
Q 006562 448 AGEAWKRRGQARAALGESVEAIQDLSKALEF------EPNSADILHERGIVNFKFKD-----------------FNAAVE 504 (640)
Q Consensus 448 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~~~-----------------~~~A~~ 504 (640)
...++..+|.++...|++++|+.++++++.. .|....++..+|.++...|+ +++|+.
T Consensus 125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~ 204 (411)
T 4a1s_A 125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE 204 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence 6789999999999999999999999999988 44556789999999999999 999999
Q ss_pred HHHHHHHhC------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccH------HHHHHHHHHHHHhcCHHHHHH
Q 006562 505 DLSACVKLD------KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL------EAWGHLTQFYQDLANSEKALE 572 (640)
Q Consensus 505 ~~~~al~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~------~~~~~la~~~~~~g~~~~A~~ 572 (640)
++++++.+. +....++..+|.++...|++++|+.++++++...+... .++..+|.++...|++++|+.
T Consensus 205 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 284 (411)
T 4a1s_A 205 FYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAE 284 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 999998764 23356889999999999999999999999999876543 388999999999999999999
Q ss_pred HHHHHHHhCCCC------hHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCC------CHHHHHHHHHHHHHcCCccccc
Q 006562 573 CLQQVLYIDKRF------SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS------NIECLYLRASCYHAIGEYREAV 639 (640)
Q Consensus 573 ~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~Al 639 (640)
++++++...+.. ..++..+|.++...|++++|+.++++++.+.+. ...++..+|.+|..+|++++|+
T Consensus 285 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 363 (411)
T 4a1s_A 285 HYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERAL 363 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHH
Confidence 999999887643 678899999999999999999999999987543 2468899999999999999885
No 42
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.92 E-value=6.2e-24 Score=217.69 Aligned_cols=260 Identities=20% Similarity=0.202 Sum_probs=166.9
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCcH
Q 006562 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP----EALIGRGTARAFQRELEAAISDFTEAIQS------NPSAG 449 (640)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~ 449 (640)
....++..|..++..|++++|+..|+++++..|.++ .++..+|.++...|++++|+.++++++.. .|...
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 345566667777777777777777777777666663 45666777777777777777777766655 22334
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhcCC--------------------HHHHH
Q 006562 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNS------ADILHERGIVNFKFKD--------------------FNAAV 503 (640)
Q Consensus 450 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~--------------------~~~A~ 503 (640)
.++..+|.++...|++++|+.++++++...|.. ..++..+|.++...|+ +++|+
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 566667777777777777777777766664432 3366666777777777 67777
Q ss_pred HHHHHHHHh------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccc------HHHHHHHHHHHHHhcCHHHHH
Q 006562 504 EDLSACVKL------DKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF------LEAWGHLTQFYQDLANSEKAL 571 (640)
Q Consensus 504 ~~~~~al~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~g~~~~A~ 571 (640)
.++.+++.. .|....++..+|.++...|++++|+..+++++...+.. ..++..+|.++...|++++|+
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 777666655 22234556666777777777777777777766654433 236666777777777777777
Q ss_pred HHHHHHHHhCCCC------hHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCC------HHHHHHHHHHHHHcCCccccc
Q 006562 572 ECLQQVLYIDKRF------SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN------IECLYLRASCYHAIGEYREAV 639 (640)
Q Consensus 572 ~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~Al 639 (640)
.++++++...+.. ..++..+|.++...|++++|+.++++++.+.+.. ..++..+|.+|..+|++++|+
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 7777776655443 4566666777777777777777777766653332 456666777777777766664
No 43
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.92 E-value=1.8e-22 Score=188.44 Aligned_cols=212 Identities=15% Similarity=0.089 Sum_probs=121.5
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 006562 412 PMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGI 491 (640)
Q Consensus 412 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 491 (640)
|.++.++..+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+..+++++...|.+..++..+|.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 84 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGW 84 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 44445555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHhc-CCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHH
Q 006562 492 VNFKF-KDFNAAVEDLSACVK--LDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSE 568 (640)
Q Consensus 492 ~~~~~-~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~ 568 (640)
++... |++++|+..+++++. ..|.+..++..+|.++...|++++|+..+++++...|.++.++..+|.++...|+++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 55555 555555555555555 344445555556666666666666666666666655655666666666666666666
Q ss_pred HHHHHHHHHHHhCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHH
Q 006562 569 KALECLQQVLYIDK-RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLY 623 (640)
Q Consensus 569 ~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 623 (640)
+|+.++++++...| .++..+..++.++...|++++|..+++.+.+..|+++.+..
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 220 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQT 220 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHH
Confidence 66666666666666 55555555566666666666666666666656666555443
No 44
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.92 E-value=3.7e-22 Score=192.55 Aligned_cols=234 Identities=18% Similarity=0.164 Sum_probs=216.3
Q ss_pred CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCcHHHH
Q 006562 377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAF----QRELEAAISDFTEAIQSNPSAGEAW 452 (640)
Q Consensus 377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~ 452 (640)
+|.++..++.+|..+...|++++|+.+|+++++ |.++.+++.+|.++.. .+++++|+.+|+++++.. ++.++
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~ 77 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGC 77 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHH
Confidence 466788999999999999999999999999998 7889999999999999 999999999999999885 78999
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 006562 453 KRRGQARAA----LGESVEAIQDLSKALEFEPNSADILHERGIVNFK----FKDFNAAVEDLSACVKLDKENKSAYTYLG 524 (640)
Q Consensus 453 ~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la 524 (640)
..+|.+|.. .+++++|+.+|++++... ++.++..+|.+|.. .+++++|+.+|+++++.. ++.++..+|
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg 153 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILG 153 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHH
Confidence 999999999 999999999999999874 78999999999999 999999999999999975 688999999
Q ss_pred HHHHH----cCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 006562 525 LALSS----IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD----LANSEKALECLQQVLYIDKRFSKAYHLRGLLLH 596 (640)
Q Consensus 525 ~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 596 (640)
.++.. .+++++|+.+|+++++.. ++.++..+|.+|.. .+++++|+.+|+++++..| +.++..+|.++.
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~ 229 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACDLK--DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQY 229 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHH
Confidence 99999 999999999999999874 57899999999999 9999999999999998865 889999999999
Q ss_pred h----cCCHHHHHHHHHHhhccCCCCHHHH
Q 006562 597 G----LGQHKKAIKDLSSGLGIDPSNIECL 622 (640)
Q Consensus 597 ~----~g~~~~A~~~~~~al~~~p~~~~~~ 622 (640)
. .+++++|+.+|+++++..|++...+
T Consensus 230 ~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~ 259 (273)
T 1ouv_A 230 NGEGVTRNEKQAIENFKKGCKLGAKGACDI 259 (273)
T ss_dssp TTSSSSCCSTTHHHHHHHHHHHTCHHHHHH
T ss_pred cCCCcccCHHHHHHHHHHHHHcCCHHHHHH
Confidence 9 9999999999999999998755443
No 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.92 E-value=1.8e-22 Score=192.23 Aligned_cols=214 Identities=15% Similarity=0.098 Sum_probs=181.1
Q ss_pred Cccc-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 006562 377 KSIS-VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR 455 (640)
Q Consensus 377 ~~~~-~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 455 (640)
+|.. +..++.+|..+...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++..|.+..++..+
T Consensus 32 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 111 (252)
T 2ho1_A 32 GRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNY 111 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHH
Confidence 3443 778888999999999999999999999999998899999999999999999999999999999888888888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q 006562 456 GQARAALGESVEAIQDLSKALE--FEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEY 533 (640)
Q Consensus 456 a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~ 533 (640)
|.++...|++++|+.++++++. ..|.+..++..+|.++...|++++|+.++++++...|.++.++..+|.++...|++
T Consensus 112 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 191 (252)
T 2ho1_A 112 GGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREY 191 (252)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCH
Confidence 8888888888888888888888 77777788888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHH
Q 006562 534 KKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHL 590 (640)
Q Consensus 534 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 590 (640)
++|+..+++++...|.+...+..++.++...|++++|..+++++++..|+++.+...
T Consensus 192 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 248 (252)
T 2ho1_A 192 VPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEF 248 (252)
T ss_dssp HHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHH
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 888888888888888888888888888888888888888888888888877765543
No 46
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.91 E-value=8e-23 Score=194.68 Aligned_cols=216 Identities=17% Similarity=0.123 Sum_probs=207.1
Q ss_pred hCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 006562 410 EDPMY-PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHE 488 (640)
Q Consensus 410 ~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 488 (640)
.+|.. +.+++.+|.++...|++++|+..|+++++..|.+..++..+|.++...|++++|+..+++++...|.+..++..
T Consensus 31 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 110 (252)
T 2ho1_A 31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNN 110 (252)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHH
Confidence 34554 78899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcC
Q 006562 489 RGIVNFKFKDFNAAVEDLSACVK--LDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN 566 (640)
Q Consensus 489 la~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~ 566 (640)
+|.++...|++++|+.++++++. ..|.+..++..+|.++...|++++|+..+++++...|.++.++..+|.++...|+
T Consensus 111 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 190 (252)
T 2ho1_A 111 YGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKERE 190 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999 8888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHH
Q 006562 567 SEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR 625 (640)
Q Consensus 567 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 625 (640)
+++|+.++++++...|.+..++..++.++...|++++|..+++++++..|+++.++..+
T Consensus 191 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 249 (252)
T 2ho1_A 191 YVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQ 249 (252)
T ss_dssp HHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998776543
No 47
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.91 E-value=3.7e-22 Score=186.22 Aligned_cols=216 Identities=16% Similarity=0.105 Sum_probs=206.2
Q ss_pred cCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 006562 376 SKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR 455 (640)
Q Consensus 376 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 455 (640)
..|.++..++.+|..++..|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++...|.+..++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 82 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNY 82 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHc-CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 006562 456 GQARAAL-GESVEAIQDLSKALE--FEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE 532 (640)
Q Consensus 456 a~~~~~~-~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~ 532 (640)
|.++... |++++|+..+++++. ..|....++..+|.++...|++++|+..++++++..|.++.++..+|.++...|+
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCC
Confidence 9999999 999999999999999 6666788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCc-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHH
Q 006562 533 YKKAEEAHLKAIQLDR-NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLR 591 (640)
Q Consensus 533 ~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l 591 (640)
+++|+..+++++...| .++..+..++.++...|+++.|..+++.+....|+++.+...+
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 9999999999999999 9999999999999999999999999999999999998876654
No 48
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.91 E-value=1.2e-23 Score=209.22 Aligned_cols=259 Identities=19% Similarity=0.197 Sum_probs=228.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCcHH
Q 006562 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP----EALIGRGTARAFQRELEAAISDFTEAIQS------NPSAGE 450 (640)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~ 450 (640)
...++..|..++..|++++|+..|+++++..|.++ .++..+|.++...|++++|+.++++++.. .|....
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 55678899999999999999999999999999984 67889999999999999999999999877 344567
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhcCC--------------------HHHHHH
Q 006562 451 AWKRRGQARAALGESVEAIQDLSKALEFEPNS------ADILHERGIVNFKFKD--------------------FNAAVE 504 (640)
Q Consensus 451 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~--------------------~~~A~~ 504 (640)
++..+|.++...|++++|+..+++++...+.. ..++..+|.++...|+ +++|+.
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 89999999999999999999999999886543 3488999999999999 999999
Q ss_pred HHHHHHHhC------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccc------HHHHHHHHHHHHHhcCHHHHHH
Q 006562 505 DLSACVKLD------KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF------LEAWGHLTQFYQDLANSEKALE 572 (640)
Q Consensus 505 ~~~~al~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~g~~~~A~~ 572 (640)
++++++... +....++..+|.++...|++++|+..+++++...+.. ..++..+|.++...|++++|+.
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999998762 3335688999999999999999999999999876543 3488999999999999999999
Q ss_pred HHHHHHHhCCCC------hHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCC------HHHHHHHHHHHHHcCCccccc
Q 006562 573 CLQQVLYIDKRF------SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN------IECLYLRASCYHAIGEYREAV 639 (640)
Q Consensus 573 ~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~Al 639 (640)
++++++...+.. ..++..+|.++...|++++|+.++++++...+.. ..++..+|.++...|++++|+
T Consensus 245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 323 (338)
T 3ro2_A 245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM 323 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 999999886654 6788999999999999999999999999875432 458889999999999999885
No 49
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.91 E-value=1.4e-22 Score=182.73 Aligned_cols=167 Identities=22% Similarity=0.301 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 006562 382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAA 461 (640)
Q Consensus 382 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 461 (640)
.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.+++...|.++.++..+|.++..
T Consensus 6 ~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (184)
T 3vtx_A 6 TIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFM 85 (184)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006562 462 LGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHL 541 (640)
Q Consensus 462 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 541 (640)
.++++.|...+.+++...|.+..++..+|.++...|++++|+..|+++++.+|.++.++..+|.++..+|++++|+..|+
T Consensus 86 ~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 165 (184)
T 3vtx_A 86 IDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFK 165 (184)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 44444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHccCc
Q 006562 542 KAIQLDR 548 (640)
Q Consensus 542 ~a~~~~~ 548 (640)
++++.+|
T Consensus 166 ~al~~~p 172 (184)
T 3vtx_A 166 KALEKEE 172 (184)
T ss_dssp HHHHTTH
T ss_pred HHHhCCc
Confidence 4444433
No 50
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.91 E-value=2.1e-22 Score=181.62 Aligned_cols=174 Identities=23% Similarity=0.370 Sum_probs=169.4
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 006562 413 MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIV 492 (640)
Q Consensus 413 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 492 (640)
+++.+|+.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.+++...|.+..++..+|.+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHH
Q 006562 493 NFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALE 572 (640)
Q Consensus 493 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 572 (640)
+...++++.|...+.+++...|.+..++..+|.++...|++++|+..|+++++.+|.++.++..+|.+|..+|++++|+.
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 162 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVK 162 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCChH
Q 006562 573 CLQQVLYIDKRFSK 586 (640)
Q Consensus 573 ~~~~al~~~~~~~~ 586 (640)
.|+++++.+|+++.
T Consensus 163 ~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 163 YFKKALEKEEKKAK 176 (184)
T ss_dssp HHHHHHHTTHHHHH
T ss_pred HHHHHHhCCccCHH
Confidence 99999999997654
No 51
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.91 E-value=7.9e-23 Score=211.51 Aligned_cols=236 Identities=15% Similarity=0.058 Sum_probs=188.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 006562 381 VDFRLSRGIAQVNEGKYASAISIFDQILKE-DPMYPEALIGRGTARAFQR---ELEAAISDFTEAIQSNPSAGEAWKRRG 456 (640)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la 456 (640)
+..++.+|.++...+.++++........+. ...++.+++.+|.+|...| ++++|+.+|+++.+..|.....++.+|
T Consensus 141 ~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg 220 (452)
T 3e4b_A 141 PEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVA 220 (452)
T ss_dssp TTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 667788888888888665555543332221 2233448899999999999 899999999999999988888888899
Q ss_pred HHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 006562 457 QARAAL----GESVEAIQDLSKALEFEPNSADILHERGIV-N--FKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS 529 (640)
Q Consensus 457 ~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~la~~-~--~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 529 (640)
.+|... +++++|+.+|+++. |.++.+++.+|.+ + ...+++++|+.+|+++.+. .++.+++.+|.+|.
T Consensus 221 ~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~- 294 (452)
T 3e4b_A 221 RVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY- 294 (452)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-
T ss_pred HHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-
Confidence 998765 78999999999987 8888999999998 4 5688999999999998865 47889999999988
Q ss_pred cC-----CHHHHHHHHHHHHccCcccHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh---
Q 006562 530 IG-----EYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD----LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG--- 597 (640)
Q Consensus 530 ~g-----~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~--- 597 (640)
.| ++++|+.+|+++. +.++.+++++|.+|.. ..++++|+.+|+++.+ +.++.+.+.+|.+|..
T Consensus 295 ~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g 369 (452)
T 3e4b_A 295 EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKG 369 (452)
T ss_dssp HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTT
T ss_pred cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCC
Confidence 55 8999999999988 8889999999988876 3489999999999876 4567888899998875
Q ss_pred -cCCHHHHHHHHHHhhccCCCCHHHHHHHHHHH
Q 006562 598 -LGQHKKAIKDLSSGLGIDPSNIECLYLRASCY 629 (640)
Q Consensus 598 -~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 629 (640)
..++.+|..+|+++.+..+ ..+...++.+.
T Consensus 370 ~~~d~~~A~~~~~~A~~~g~--~~a~~~l~~l~ 400 (452)
T 3e4b_A 370 TKPDPLNAYVFSQLAKAQDT--PEANDLATQLE 400 (452)
T ss_dssp BCCCHHHHHHHHHHHHTTCC--HHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHH
Confidence 5689999999999987654 44444454443
No 52
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.91 E-value=5.7e-23 Score=213.98 Aligned_cols=216 Identities=19% Similarity=0.197 Sum_probs=204.6
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCH-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006562 395 GKYASAISIFDQILKEDPMYPEALIGRGTARAFQREL-EAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLS 473 (640)
Q Consensus 395 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 473 (640)
+.+++++..+.+.....|.++.+++.+|.++...|++ ++|+.+|+++++.+|+++.++..+|.+|...|++++|+.+|+
T Consensus 82 ~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3477888888888888999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc--------CCHHHH
Q 006562 474 KALEFEPNSADILHERGIVNFKF---------KDFNAAVEDLSACVKLDKENKSAYTYLGLALSSI--------GEYKKA 536 (640)
Q Consensus 474 ~al~~~p~~~~~~~~la~~~~~~---------~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~--------g~~~~A 536 (640)
++++++|+ ..++..+|.++... |++++|+..|+++++++|+++.+|..+|.++... |++++|
T Consensus 162 ~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A 240 (474)
T 4abn_A 162 GALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQA 240 (474)
T ss_dssp HHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 99999998 79999999999999 9999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHccCc---ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 006562 537 EEAHLKAIQLDR---NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSG 611 (640)
Q Consensus 537 ~~~~~~a~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 611 (640)
+..|++++..+| .++.++..+|.+|...|++++|+..|+++++.+|+++.++..++.++...|++++|+..+.+.
T Consensus 241 ~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 241 LSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999 899999999999999999999999999999999999999999999999999999999877654
No 53
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.90 E-value=2.3e-22 Score=194.12 Aligned_cols=227 Identities=18% Similarity=0.070 Sum_probs=204.0
Q ss_pred CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 006562 377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG 456 (640)
Q Consensus 377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 456 (640)
.|.++..++.+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+.+|+++++.+|.++.++..+|
T Consensus 39 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la 118 (275)
T 1xnf_A 39 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG 118 (275)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH
Q 006562 457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKA 536 (640)
Q Consensus 457 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A 536 (640)
.++...|++++|+..+++++...|.+.......+.+ ...|++++|+..+.+++...|.+...+. ++.++...++.++|
T Consensus 119 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a 196 (275)
T 1xnf_A 119 IALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQTL 196 (275)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHhcCHHHH
Confidence 999999999999999999999999998766655544 6779999999999999999998866554 77888889999999
Q ss_pred HHHHHHHHccCccc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 006562 537 EEAHLKAIQLDRNF----LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL 608 (640)
Q Consensus 537 ~~~~~~a~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 608 (640)
+..+.+++...|.. +.++..+|.++...|++++|+.+|++++..+|++...+ +.++...|++++|+..+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 197 MERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH---HHHHHHHHHHHHC----
T ss_pred HHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHHH---HHHHHHHHHHHhhHHHH
Confidence 99999999887754 78999999999999999999999999999999775543 77888999999999887
No 54
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.90 E-value=6.4e-23 Score=213.56 Aligned_cols=210 Identities=21% Similarity=0.202 Sum_probs=203.9
Q ss_pred cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006562 429 RELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGES-VEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLS 507 (640)
Q Consensus 429 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 507 (640)
+.+++++..+.+.....|.++.+++.+|.++...|++ ++|+..|+++++.+|.+..++..+|.++...|++++|+.+|+
T Consensus 82 ~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4577888889999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHh--------cCHHHH
Q 006562 508 ACVKLDKENKSAYTYLGLALSSI---------GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL--------ANSEKA 570 (640)
Q Consensus 508 ~al~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~--------g~~~~A 570 (640)
++++.+|+ ..++..+|.++... |++++|+..|++++..+|+++.+|..+|.++... |++++|
T Consensus 162 ~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A 240 (474)
T 4abn_A 162 GALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQA 240 (474)
T ss_dssp HHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 99999999 79999999999999 9999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHhCC---CChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCCccccc
Q 006562 571 LECLQQVLYIDK---RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAV 639 (640)
Q Consensus 571 ~~~~~~al~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Al 639 (640)
+..|+++++.+| .++.++..+|.++...|++++|+..|+++++++|++..++..++.++..+|++++|+
T Consensus 241 ~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi 312 (474)
T 4abn_A 241 LSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLL 312 (474)
T ss_dssp HHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 999999999999999999999999999999999999999999999999999999886
No 55
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.90 E-value=1.5e-22 Score=207.97 Aligned_cols=202 Identities=18% Similarity=0.180 Sum_probs=150.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHccC-----------------HHHHHHH
Q 006562 381 VDFRLSRGIAQVNEGKYASAISIFDQILKE------DPMYPEALIGRGTARAFQRE-----------------LEAAISD 437 (640)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~------~~~~~~~~~~la~~~~~~g~-----------------~~~A~~~ 437 (640)
...+..+|.++...|++++|+..|++++.. .+....++..+|.++...|+ +++|+.+
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 567788999999999999999999999987 45567789999999999999 8999999
Q ss_pred HHHHHHhCC------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHhcCCHHHHHHH
Q 006562 438 FTEAIQSNP------SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA------DILHERGIVNFKFKDFNAAVED 505 (640)
Q Consensus 438 ~~~al~~~p------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~~~~~~A~~~ 505 (640)
++++++..+ ....++..+|.++...|++++|+.++++++...+... .++..+|.++...|++++|+.+
T Consensus 206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (411)
T 4a1s_A 206 YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEH 285 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 888876532 2345777788888888888888888888887765432 2677777777777777777777
Q ss_pred HHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccc------HHHHHHHHHHHHHhcCHHHHHHH
Q 006562 506 LSACVKLDKEN------KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF------LEAWGHLTQFYQDLANSEKALEC 573 (640)
Q Consensus 506 ~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~ 573 (640)
+++++...+.. ..++..+|.++...|++++|+.++++++...+.. ..++..+|.++...|++++|+.+
T Consensus 286 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 365 (411)
T 4a1s_A 286 YKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKY 365 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 77777765532 4566667777777777777777777776654332 34666666666677777777777
Q ss_pred HHHHHHhCC
Q 006562 574 LQQVLYIDK 582 (640)
Q Consensus 574 ~~~al~~~~ 582 (640)
+++++.+.+
T Consensus 366 ~~~al~~~~ 374 (411)
T 4a1s_A 366 AEQHLQLAX 374 (411)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHHHh
Confidence 776666654
No 56
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.90 E-value=3.2e-22 Score=198.95 Aligned_cols=200 Identities=20% Similarity=0.236 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccC--------------------HHHH
Q 006562 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY------PEALIGRGTARAFQRE--------------------LEAA 434 (640)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~------~~~~~~la~~~~~~g~--------------------~~~A 434 (640)
+..+..+|.++...|++++|+..++++++..+.. ..++..+|.++...|+ +++|
T Consensus 83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A 162 (338)
T 3ro2_A 83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA 162 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHH
Confidence 5567788999999999999999999998875433 3478888899988888 8888
Q ss_pred HHHHHHHHHhC------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhcCCHHHH
Q 006562 435 ISDFTEAIQSN------PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS------ADILHERGIVNFKFKDFNAA 502 (640)
Q Consensus 435 ~~~~~~al~~~------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A 502 (640)
+.++++++... +....++..+|.++...|++++|+.++++++...+.. ..++..+|.++...|++++|
T Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 242 (338)
T 3ro2_A 163 VDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 242 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 88888776552 2223456666666666666666666666666554321 12455555555555555555
Q ss_pred HHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccc------HHHHHHHHHHHHHhcCHHHH
Q 006562 503 VEDLSACVKLDKEN------KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF------LEAWGHLTQFYQDLANSEKA 570 (640)
Q Consensus 503 ~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~g~~~~A 570 (640)
+.++++++...+.. ..++..+|.++...|++++|+.++++++...+.. ..++..+|.++...|++++|
T Consensus 243 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 322 (338)
T 3ro2_A 243 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA 322 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 55555555443322 3344444444444444444444444444432221 22333444444444444444
Q ss_pred HHHHHHHHHh
Q 006562 571 LECLQQVLYI 580 (640)
Q Consensus 571 ~~~~~~al~~ 580 (640)
..++++++..
T Consensus 323 ~~~~~~a~~~ 332 (338)
T 3ro2_A 323 MHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 57
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.90 E-value=1.8e-21 Score=182.19 Aligned_cols=217 Identities=18% Similarity=0.193 Sum_probs=119.2
Q ss_pred ccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 006562 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDP-MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQ 457 (640)
Q Consensus 379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 457 (640)
.++..++.+|..++..|++++|+..|+++++.+| .+..+++.+|.++...|++++|+..|+++++.+|.++.++..+|.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 3445555566666666666666666666665555 555555555555555555555555555555555555555555555
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Q 006562 458 ARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAE 537 (640)
Q Consensus 458 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~ 537 (640)
++...|++++|+..++++++..|+++..+..++ .++..+|.++...|++++|+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~---------------------------~~~~~~g~~~~~~~~~~~A~ 137 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYA---------------------------IYYLKEGQKFQQAGNIEKAE 137 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH---------------------------HHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHH---------------------------HHHHHHhHHHHHhccHHHHH
Confidence 555555555555555555555555552211111 24555555555566666666
Q ss_pred HHHHHHHccCcc--cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccC
Q 006562 538 EAHLKAIQLDRN--FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGID 615 (640)
Q Consensus 538 ~~~~~a~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 615 (640)
..|++++..+|+ ++.++..+|.++...|+ ..++++..+.+.....+ .+......+.+++|+.+|+++++++
T Consensus 138 ~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~-----~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 138 ENYKHATDVTSKKWKTDALYSLGVLFYNNGA-----DVLRKATPLASSNKEKY--ASEKAKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHHHHHHHH-----HHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCCCcccHHHHHHHHHHHHHHHH-----HHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 666666666665 55566666666544432 23344444444333222 2233344455666666666666666
Q ss_pred CCCHHHHHHHHHHH
Q 006562 616 PSNIECLYLRASCY 629 (640)
Q Consensus 616 p~~~~~~~~la~~~ 629 (640)
|+++.++..++.+.
T Consensus 211 p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 211 PNRTEIKQMQDQVK 224 (228)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 66666666665554
No 58
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.90 E-value=3.6e-21 Score=180.12 Aligned_cols=132 Identities=20% Similarity=0.213 Sum_probs=107.2
Q ss_pred hHHHHHhhhhccCc-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 006562 365 NKKFCVTRISKSKS-ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQ 443 (640)
Q Consensus 365 ~~~~~~~~~~~~~~-~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 443 (640)
.....+..+....| .+...++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++
T Consensus 25 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 104 (228)
T 4i17_A 25 VAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIK 104 (228)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 33344666677777 88889999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCcH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhc
Q 006562 444 SNPSAG-------EAWKRRGQARAALGESVEAIQDLSKALEFEPN--SADILHERGIVNFKF 496 (640)
Q Consensus 444 ~~p~~~-------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~ 496 (640)
.+|+++ .++..+|.++...|++++|+..|+++++.+|+ ++.++..+|.++...
T Consensus 105 ~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~ 166 (228)
T 4i17_A 105 AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNN 166 (228)
T ss_dssp HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH
Confidence 999998 44666666666666666666666666666666 556666666666443
No 59
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.89 E-value=2.7e-21 Score=189.84 Aligned_cols=222 Identities=8% Similarity=-0.022 Sum_probs=173.6
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------ccCH-------HHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHc
Q 006562 398 ASAISIFDQILKEDPMYPEALIGRGTARAF-------QREL-------EAAISDFTEAIQ-SNPSAGEAWKRRGQARAAL 462 (640)
Q Consensus 398 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~-------~g~~-------~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~ 462 (640)
.+|+..|++++..+|.++.+|+.+|..+.. .|++ ++|+..|+++++ ..|++..+|..+|.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 677788888888888888888888877763 4664 788888888888 5788888888888888888
Q ss_pred CCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCHHHHHHHH
Q 006562 463 GESVEAIQDLSKALEFEPNSAD-ILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS-IGEYKKAEEAH 540 (640)
Q Consensus 463 ~~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~ 540 (640)
|++++|...|+++++..|.++. +|..+|.++...|++++|...|+++++..|....++...+.+... .|++++|+..|
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~ 192 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIF 192 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888888888888888887775 788888888888888888888888888877777776655555433 68888888888
Q ss_pred HHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CC-CChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCC
Q 006562 541 LKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI---DK-RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP 616 (640)
Q Consensus 541 ~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 616 (640)
++++..+|+++.+|..++.++...|++++|+.+|++++.. .| ....+|..++.++...|+++.|...++++++..|
T Consensus 193 ~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p 272 (308)
T 2ond_A 193 ELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Confidence 8888888888888888888888888888888888888874 44 3566777778888888888888888888888777
Q ss_pred CCH
Q 006562 617 SNI 619 (640)
Q Consensus 617 ~~~ 619 (640)
++.
T Consensus 273 ~~~ 275 (308)
T 2ond_A 273 EEY 275 (308)
T ss_dssp TTT
T ss_pred ccc
Confidence 644
No 60
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.89 E-value=1.8e-20 Score=180.69 Aligned_cols=217 Identities=18% Similarity=0.157 Sum_probs=202.2
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHH
Q 006562 411 DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAA----LGESVEAIQDLSKALEFEPNSADIL 486 (640)
Q Consensus 411 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~ 486 (640)
+|.++.+++.+|.++...|++++|+.+|+++++ |.++.+++.+|.++.. .+++++|+.+|+++++.. ++.++
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~ 77 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGC 77 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHH
Confidence 578899999999999999999999999999998 7888999999999999 999999999999999985 78999
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHccCcccHHHHHHHH
Q 006562 487 HERGIVNFK----FKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS----IGEYKKAEEAHLKAIQLDRNFLEAWGHLT 558 (640)
Q Consensus 487 ~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~la 558 (640)
+.+|.++.. .+++++|+.+|++++.. +++.+++.+|.++.. .+++++|+.+|++++... ++.++..+|
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg 153 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILG 153 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHH
Confidence 999999999 99999999999999987 489999999999999 999999999999999876 578999999
Q ss_pred HHHHH----hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHH
Q 006562 559 QFYQD----LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG----LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYH 630 (640)
Q Consensus 559 ~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 630 (640)
.++.. .+++++|+.+|+++++. .++.++..+|.++.. .+++++|+.+|+++++..| +.+++.+|.+|.
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~ 229 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQY 229 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHH
Confidence 99999 99999999999999987 468899999999999 9999999999999999866 889999999999
Q ss_pred H----cCCccccc
Q 006562 631 A----IGEYREAV 639 (640)
Q Consensus 631 ~----~g~~~~Al 639 (640)
. .+++++|+
T Consensus 230 ~g~~~~~~~~~A~ 242 (273)
T 1ouv_A 230 NGEGVTRNEKQAI 242 (273)
T ss_dssp TTSSSSCCSTTHH
T ss_pred cCCCcccCHHHHH
Confidence 9 99999885
No 61
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.88 E-value=7.4e-21 Score=186.73 Aligned_cols=248 Identities=10% Similarity=0.016 Sum_probs=218.3
Q ss_pred HHHhhhhccCcccHHHHHHHHHHHHH-------cCCh-------HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHccCHH
Q 006562 368 FCVTRISKSKSISVDFRLSRGIAQVN-------EGKY-------ASAISIFDQILK-EDPMYPEALIGRGTARAFQRELE 432 (640)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~a~~~~~-------~g~~-------~~A~~~~~~~l~-~~~~~~~~~~~la~~~~~~g~~~ 432 (640)
..+++++...|.++.+|+..|..+.. .|++ ++|+..|+++++ .+|++..+|..+|.++...|+++
T Consensus 37 ~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~ 116 (308)
T 2ond_A 37 FAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYE 116 (308)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHH
Confidence 46677778899999999999998874 5886 999999999999 79999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHH
Q 006562 433 AAISDFTEAIQSNPSAGE-AWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFK-FKDFNAAVEDLSACV 510 (640)
Q Consensus 433 ~A~~~~~~al~~~p~~~~-~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~al 510 (640)
+|...|+++++..|.++. +|..+|.++...|++++|+..|+++++..|....++...+.+... .|++++|...|++++
T Consensus 117 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al 196 (308)
T 2ond_A 117 KVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGL 196 (308)
T ss_dssp HHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999999999887 999999999999999999999999999999998888777766543 799999999999999
Q ss_pred HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc---Ccc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChH
Q 006562 511 KLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL---DRN-FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSK 586 (640)
Q Consensus 511 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 586 (640)
+.+|+++.+|..++.++...|++++|+..|++++.. .|+ ...+|..++.++...|+++.|..+++++++..|+++.
T Consensus 197 ~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~ 276 (308)
T 2ond_A 197 KKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYE 276 (308)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTS
T ss_pred HhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccccc
Confidence 999999999999999999999999999999999995 553 6889999999999999999999999999999997553
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHH
Q 006562 587 AYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS 627 (640)
Q Consensus 587 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 627 (640)
.... +.+ ....+.+.++|++++.+..+|.
T Consensus 277 ~~~~-~~~-----------~~r~~~l~~~P~~~~~ln~lgY 305 (308)
T 2ond_A 277 GKET-ALL-----------VDRYKFMDLYPCSASELKALGY 305 (308)
T ss_dssp SCHH-HHH-----------HTTTCBTTBCSSCHHHHHTTTC
T ss_pred cchH-HHH-----------HHHHHhcccCCCCHHHHHhcCC
Confidence 3211 222 1112677899999998877663
No 62
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.87 E-value=7.4e-22 Score=194.20 Aligned_cols=244 Identities=14% Similarity=0.098 Sum_probs=201.2
Q ss_pred hccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-
Q 006562 374 SKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKE--------DPMYPEALIGRGTARAFQRELEAAISDFTEAIQS- 444 (640)
Q Consensus 374 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~- 444 (640)
...+|..+..+..+|..+...|++++|+.+|+++++. .|....++..+|.++...|++++|+.++++++..
T Consensus 20 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 99 (311)
T 3nf1_A 20 GYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR 99 (311)
T ss_dssp CTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 3456777899999999999999999999999999984 5667889999999999999999999999999987
Q ss_pred -------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006562 445 -------NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFE--------PNSADILHERGIVNFKFKDFNAAVEDLSAC 509 (640)
Q Consensus 445 -------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 509 (640)
.|....++..+|.++...|++++|+.++++++... |....++..+|.++...|++++|+.+++++
T Consensus 100 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 179 (311)
T 3nf1_A 100 EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRA 179 (311)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35567789999999999999999999999999874 445678999999999999999999999999
Q ss_pred HHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcc---------------cHHHHHHHHHHHHHhcC
Q 006562 510 VKL--------DKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN---------------FLEAWGHLTQFYQDLAN 566 (640)
Q Consensus 510 l~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~---------------~~~~~~~la~~~~~~g~ 566 (640)
+.. .|....++..+|.++...|++++|+..+++++...|. ....+...+..+...+.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (311)
T 3nf1_A 180 LEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTS 259 (311)
T ss_dssp HHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CC
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHH
Confidence 998 6667788999999999999999999999999976443 12334445555666777
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCC
Q 006562 567 SEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS 617 (640)
Q Consensus 567 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 617 (640)
+.+|...+.++....|..+.++..+|.++...|++++|+.+|++++++.|.
T Consensus 260 ~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 260 FGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp SCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 888888999999888999999999999999999999999999999988765
No 63
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.87 E-value=1.1e-19 Score=174.38 Aligned_cols=240 Identities=14% Similarity=0.037 Sum_probs=221.5
Q ss_pred HHHHHcCCh-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhCCCcHHHHHHHHHHH----HH
Q 006562 389 IAQVNEGKY-ASAISIFDQILKEDPMYPEALIGRGTARAFQR--ELEAAISDFTEAIQSNPSAGEAWKRRGQAR----AA 461 (640)
Q Consensus 389 ~~~~~~g~~-~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~----~~ 461 (640)
......|.+ ++|+..+.+++.++|++..+|...+.++...| ++++++..+.+++..+|++..+|...+.++ ..
T Consensus 40 ~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~ 119 (306)
T 3dra_A 40 LALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMEL 119 (306)
T ss_dssp HHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHh
Confidence 344555665 69999999999999999999999999999999 999999999999999999999999999999 66
Q ss_pred c---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC----
Q 006562 462 L---GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFN--AAVEDLSACVKLDKENKSAYTYLGLALSSIGE---- 532 (640)
Q Consensus 462 ~---~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~--~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~---- 532 (640)
. +++++++..+.++++.+|.+..+|...+.++...|.++ +++.++.++++.+|.+..+|...+.+....+.
T Consensus 120 l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 120 NNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp TTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCH
T ss_pred ccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchh
Confidence 7 78999999999999999999999999999999999998 99999999999999999999999999999987
Q ss_pred --HHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHhC---CCChHHHHHHHHHHHhcCCHHHHHH
Q 006562 533 --YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEK-ALECLQQVLYID---KRFSKAYHLRGLLLHGLGQHKKAIK 606 (640)
Q Consensus 533 --~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~---~~~~~~~~~la~~~~~~g~~~~A~~ 606 (640)
+++++.++.+++..+|.+..+|+.++.++...|+... ...++.+++... |.++.++..++.++.+.|+.++|++
T Consensus 200 ~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 200 NTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 9999999999999999999999999999999998555 556777777766 7889999999999999999999999
Q ss_pred HHHHhhc-cCCCCHHHHHHHHHH
Q 006562 607 DLSSGLG-IDPSNIECLYLRASC 628 (640)
Q Consensus 607 ~~~~al~-~~p~~~~~~~~la~~ 628 (640)
.|+.+.+ .+|-....|...+..
T Consensus 280 ~~~~l~~~~Dpir~~yW~~~~~~ 302 (306)
T 3dra_A 280 VYDLLKSKYNPIRSNFWDYQISK 302 (306)
T ss_dssp HHHHHHHTTCGGGHHHHHHHHHT
T ss_pred HHHHHHhccChHHHHHHHHHHhh
Confidence 9999996 899999998877654
No 64
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.86 E-value=6e-21 Score=206.05 Aligned_cols=174 Identities=18% Similarity=0.263 Sum_probs=106.6
Q ss_pred cCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 006562 376 SKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR 455 (640)
Q Consensus 376 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 455 (640)
..|.+++++..+|.++...|++++|+..|+++++.+|+++.++.++|.++...|++++|+..|+++++++|+++.++..+
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL 83 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 83 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 34555666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Q 006562 456 GQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKK 535 (640)
Q Consensus 456 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~ 535 (640)
|.++..+|++++|+..|+++++++|++..++..+|.++...|++++|+..|+++++++|+++.++..+|.++...|++++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHccCcc
Q 006562 536 AEEAHLKAIQLDRN 549 (640)
Q Consensus 536 A~~~~~~a~~~~~~ 549 (640)
|++.+++++++.|+
T Consensus 164 A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 164 YDERMKKLVSIVAD 177 (723)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChh
Confidence 66666665555443
No 65
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.86 E-value=8.4e-21 Score=204.89 Aligned_cols=173 Identities=17% Similarity=0.217 Sum_probs=168.4
Q ss_pred hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 006562 410 EDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHER 489 (640)
Q Consensus 410 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 489 (640)
..|+++.++.++|.++..+|++++|+.+|+++++++|++..++..+|.+|..+|++++|+..|+++++++|++..++..+
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL 83 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 83 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHH
Q 006562 490 GIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEK 569 (640)
Q Consensus 490 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~ 569 (640)
|.++..+|++++|+..|+++++++|++..++.++|.++..+|++++|+..|+++++++|+++.++.++|.++..+|++++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCC
Q 006562 570 ALECLQQVLYIDK 582 (640)
Q Consensus 570 A~~~~~~al~~~~ 582 (640)
|++.+++++++.|
T Consensus 164 A~~~~~kal~l~~ 176 (723)
T 4gyw_A 164 YDERMKKLVSIVA 176 (723)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCh
Confidence 9999999988755
No 66
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.86 E-value=2e-20 Score=190.02 Aligned_cols=235 Identities=14% Similarity=0.134 Sum_probs=203.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-------
Q 006562 381 VDFRLSRGIAQVNEGKYASAISIFDQILKE---DPM---YPEALIGRGTARAFQRELEAAISDFTEAIQSNPS------- 447 (640)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~---~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------- 447 (640)
...++.+|..++..|++++|+..|+++++. .++ .+.++..+|.++...|++++|+.++.++++..+.
T Consensus 103 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 182 (383)
T 3ulq_A 103 YYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIR 182 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHH
Confidence 346677999999999999999999999986 233 4688999999999999999999999999987543
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----hC-CC
Q 006562 448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS------ADILHERGIVNFKFKDFNAAVEDLSACVK-----LD-KE 515 (640)
Q Consensus 448 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~-----~~-~~ 515 (640)
...++..+|.+|...|++++|+.++++++.+.+.. ..++..+|.++...|++++|+.++++++. .+ |.
T Consensus 183 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~ 262 (383)
T 3ulq_A 183 LLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPS 262 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchh
Confidence 24588999999999999999999999999886543 24889999999999999999999999999 45 77
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC-----cccHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHhCCCChHH
Q 006562 516 NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD-----RNFLEAWGHLTQFYQDLAN---SEKALECLQQVLYIDKRFSKA 587 (640)
Q Consensus 516 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-----~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~ 587 (640)
...++..+|.++...|++++|+.++++++... |.....+..+|.++...|+ +++|+.++++. ...|....+
T Consensus 263 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~ 341 (383)
T 3ulq_A 263 LPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDF 341 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHH
Confidence 78999999999999999999999999999874 4344456789999999999 88888888776 334455678
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCC
Q 006562 588 YHLRGLLLHGLGQHKKAIKDLSSGLGIDP 616 (640)
Q Consensus 588 ~~~la~~~~~~g~~~~A~~~~~~al~~~p 616 (640)
+..+|.+|...|++++|..+|++++++..
T Consensus 342 ~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 342 AIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999987643
No 67
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.86 E-value=3.4e-20 Score=191.79 Aligned_cols=234 Identities=12% Similarity=0.033 Sum_probs=195.0
Q ss_pred HHHHHHHHHHHHcCChHH---HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHH----HHHHHHHHHHhCCCcHHHHHH
Q 006562 382 DFRLSRGIAQVNEGKYAS---AISIFDQILKEDPMYPEALIGRGTARAFQRELEA----AISDFTEAIQSNPSAGEAWKR 454 (640)
Q Consensus 382 ~~~~~~a~~~~~~g~~~~---A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~----A~~~~~~al~~~p~~~~~~~~ 454 (640)
..++.+|.+|...+...+ +...+.++.. +.++.+++.+|.+|...+.+++ +..+++.+...+| .+++.
T Consensus 107 ~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~--~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~---~a~~~ 181 (452)
T 3e4b_A 107 NTLIPLAMLYLQYPHSFPNVNAQQQISQWQA--AGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTD---ICYVE 181 (452)
T ss_dssp SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHH--HTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCT---THHHH
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCH---HHHHH
Confidence 356677777777665444 4444444443 3457899999999999985544 4445555544444 49999
Q ss_pred HHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHhCCCcHHHHHHHHHH-
Q 006562 455 RGQARAALG---ESVEAIQDLSKALEFEPNSADILHERGIVNFKF----KDFNAAVEDLSACVKLDKENKSAYTYLGLA- 526 (640)
Q Consensus 455 la~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----~~~~~A~~~~~~al~~~~~~~~~~~~la~~- 526 (640)
+|.+|...| ++++|+.+|+++....|.....++.+|.+|... +++++|+.+|+++. |.++.+++.+|.+
T Consensus 182 Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~ 258 (452)
T 3e4b_A 182 LATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLL 258 (452)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHH
T ss_pred HHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHH
Confidence 999999999 999999999999999999999889999999776 79999999999998 8999999999999
Q ss_pred H--HHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhc-----CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh--
Q 006562 527 L--SSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA-----NSEKALECLQQVLYIDKRFSKAYHLRGLLLHG-- 597 (640)
Q Consensus 527 ~--~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-- 597 (640)
+ ...+++++|+.+|+++... .++.+++.+|.+|. .| ++++|+.+|+++. +.++.+++.+|.+|..
T Consensus 259 ~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~ 332 (452)
T 3e4b_A 259 YDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGY 332 (452)
T ss_dssp HHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTT
T ss_pred HhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCC
Confidence 4 4689999999999999865 47999999999998 66 9999999999998 8999999999999987
Q ss_pred --cCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH
Q 006562 598 --LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHA 631 (640)
Q Consensus 598 --~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 631 (640)
..++++|+.+|+++.+. .++.+.+.+|.+|..
T Consensus 333 g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~ 366 (452)
T 3e4b_A 333 LGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQ 366 (452)
T ss_dssp TSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHS
T ss_pred CCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHh
Confidence 45999999999999874 567889999999874
No 68
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.86 E-value=4e-20 Score=176.91 Aligned_cols=209 Identities=16% Similarity=0.055 Sum_probs=118.8
Q ss_pred cCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---H
Q 006562 376 SKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---G 449 (640)
Q Consensus 376 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~ 449 (640)
..+.++..++.+|..++..|+|++|+..|+++++.+|.+ +.+++.+|.+++..|++++|+..|+++++..|++ +
T Consensus 10 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 89 (261)
T 3qky_A 10 LRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP 89 (261)
T ss_dssp -CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence 455566666666666666666666666666666666666 6666666666666666666666666666665533 4
Q ss_pred HHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 006562 450 EAWKRRGQARAA--------LGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYT 521 (640)
Q Consensus 450 ~~~~~la~~~~~--------~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 521 (640)
.+++.+|.++.. .|++++|+..|++++...|++..+...+..+....+ .....++
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~-----------------~~~~~~~ 152 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRA-----------------KLARKQY 152 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHH-----------------HHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHH-----------------HHHHHHH
Confidence 556666666666 666666666666666666655443332222211111 1112245
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHccCcc---cHHHHHHHHHHHHHh----------cCHHHHHHHHHHHHHhCCCChH--
Q 006562 522 YLGLALSSIGEYKKAEEAHLKAIQLDRN---FLEAWGHLTQFYQDL----------ANSEKALECLQQVLYIDKRFSK-- 586 (640)
Q Consensus 522 ~la~~~~~~g~~~~A~~~~~~a~~~~~~---~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~~~~~~-- 586 (640)
.+|.++...|++++|+..|++++...|+ .+.+++.+|.+|..+ |++++|+..|+++++..|+++.
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 232 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLR 232 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHH
Confidence 5666666666666666666666666555 345566666666554 5555555555555555555532
Q ss_pred -HHHHHHHHHHhcCCH
Q 006562 587 -AYHLRGLLLHGLGQH 601 (640)
Q Consensus 587 -~~~~la~~~~~~g~~ 601 (640)
+...++.++...+++
T Consensus 233 ~a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 233 TAEELYTRARQRLTEL 248 (261)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 333344444444433
No 69
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.85 E-value=6.7e-20 Score=175.39 Aligned_cols=190 Identities=16% Similarity=0.062 Sum_probs=148.0
Q ss_pred hhHHHHHhhhhccCccc---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHH--------cc
Q 006562 364 RNKKFCVTRISKSKSIS---VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAF--------QR 429 (640)
Q Consensus 364 ~~~~~~~~~~~~~~~~~---~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~--------~g 429 (640)
......+..++...|.+ +.+++.+|.+++..|++++|+..|+++++..|++ +.+++.+|.++.. .|
T Consensus 32 ~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~ 111 (261)
T 3qky_A 32 DRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQT 111 (261)
T ss_dssp HHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCH
T ss_pred HHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccch
Confidence 34444577777888877 8999999999999999999999999999998854 6789999999999 99
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006562 430 ELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509 (640)
Q Consensus 430 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 509 (640)
++++|+..|+++++.+|+++.+...+..+....+. ....++.+|.++...|++++|+..|+++
T Consensus 112 ~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~-----------------~~~~~~~la~~~~~~g~~~~A~~~~~~~ 174 (261)
T 3qky_A 112 DTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAK-----------------LARKQYEAARLYERRELYEAAAVTYEAV 174 (261)
T ss_dssp HHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999999999999999987665444333222111 1233677888888888888888888888
Q ss_pred HHhCCC---cHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHccCcccH---HHHHHHHHHHHHhcCHHHH
Q 006562 510 VKLDKE---NKSAYTYLGLALSSI----------GEYKKAEEAHLKAIQLDRNFL---EAWGHLTQFYQDLANSEKA 570 (640)
Q Consensus 510 l~~~~~---~~~~~~~la~~~~~~----------g~~~~A~~~~~~a~~~~~~~~---~~~~~la~~~~~~g~~~~A 570 (640)
+...|+ .+.+++.+|.++..+ |++++|+..|++++...|+++ .+...++.++...++++.+
T Consensus 175 l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 175 FDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhhh
Confidence 888777 456788888888766 788888888888888888773 4555666666666666544
No 70
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.85 E-value=2e-18 Score=189.04 Aligned_cols=237 Identities=14% Similarity=0.120 Sum_probs=154.3
Q ss_pred ccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 006562 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQA 458 (640)
Q Consensus 379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 458 (640)
.++..+...|.++...|+|++|+++|..+.+..++ +.+...+|.+|.+.+++++ ++.|. ..+ +...+..+|..
T Consensus 1132 dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e-~~Idt~LafaYAKl~rlee-le~fI----~~~-n~ad~~~iGd~ 1204 (1630)
T 1xi4_A 1132 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAE-LEEFI----NGP-NNAHIQQVGDR 1204 (1630)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc-ccccHHHHHHHHhhcCHHH-HHHHH----hCC-CHHHHHHHHHH
Confidence 33455555555555555555555555555554432 2222235555555555543 22221 122 22344456666
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 006562 459 RAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEE 538 (640)
Q Consensus 459 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~ 538 (640)
+...|+|++|+.+|.++ ..|..++.++.+.|++++|++.++++ .+..+|...+.++...|+|..|..
T Consensus 1205 le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA-----~n~~aWkev~~acve~~Ef~LA~~ 1271 (1630)
T 1xi4_A 1205 CYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQM 1271 (1630)
T ss_pred HHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHh-----CCHHHHHHHHHHHhhhhHHHHHHH
Confidence 66666666666666654 35556666666666666666666665 345666666666666666666666
Q ss_pred HHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh--cCCHHHHHHHHHHhhccCC
Q 006562 539 AHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG--LGQHKKAIKDLSSGLGIDP 616 (640)
Q Consensus 539 ~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p 616 (640)
+... +.. +++.+..++..|...|.+++|+.+++.++.+++.+...+..+|.++.+ -++..++++.|...+.+.|
T Consensus 1272 cgl~-Iiv---~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k 1347 (1630)
T 1xi4_A 1272 CGLH-IVV---HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPK 1347 (1630)
T ss_pred HHHh-hhc---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccch
Confidence 5543 222 344556788889999999999999999999999888888888877765 5577888888888888777
Q ss_pred -----CCHHHHHHHHHHHHHcCCccccc
Q 006562 617 -----SNIECLYLRASCYHAIGEYREAV 639 (640)
Q Consensus 617 -----~~~~~~~~la~~~~~~g~~~~Al 639 (640)
.+...|..+..+|.+-|+++.|+
T Consensus 1348 ~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1348 VLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 67888999999999999999886
No 71
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.85 E-value=1.8e-20 Score=190.35 Aligned_cols=222 Identities=16% Similarity=0.107 Sum_probs=192.5
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh---CCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------H
Q 006562 417 ALIGRGTARAFQRELEAAISDFTEAIQS---NPS---AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS-------A 483 (640)
Q Consensus 417 ~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------~ 483 (640)
.++.+|.++...|++++|+.+++++++. .++ .+.++..+|.+|...|++++|+.++.+++.+.+.. .
T Consensus 105 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 184 (383)
T 3ulq_A 105 FNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLL 184 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHH
Confidence 3455999999999999999999999987 233 45789999999999999999999999999985443 3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHc-----cC-cccH
Q 006562 484 DILHERGIVNFKFKDFNAAVEDLSACVKLDKEN------KSAYTYLGLALSSIGEYKKAEEAHLKAIQ-----LD-RNFL 551 (640)
Q Consensus 484 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~a~~-----~~-~~~~ 551 (640)
.++..+|.++...|++++|+.++++++...+.. ..++..+|.++...|++++|+.++++++. .+ |..+
T Consensus 185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 264 (383)
T 3ulq_A 185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP 264 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHH
Confidence 588999999999999999999999999885433 35889999999999999999999999999 46 7789
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-----CChHHHHHHHHHHHhcCC---HHHHHHHHHHhhccCCCCHHHHH
Q 006562 552 EAWGHLTQFYQDLANSEKALECLQQVLYIDK-----RFSKAYHLRGLLLHGLGQ---HKKAIKDLSSGLGIDPSNIECLY 623 (640)
Q Consensus 552 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~ 623 (640)
.++..+|.++...|++++|+.++++++...+ .....+..+|.++...|+ +++|+..+++. ...|....++.
T Consensus 265 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~ 343 (383)
T 3ulq_A 265 QAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAI 343 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHH
Confidence 9999999999999999999999999998743 333346779999999999 88899998887 34445567889
Q ss_pred HHHHHHHHcCCccccc
Q 006562 624 LRASCYHAIGEYREAV 639 (640)
Q Consensus 624 ~la~~~~~~g~~~~Al 639 (640)
.+|.+|..+|++++|+
T Consensus 344 ~la~~y~~~g~~~~A~ 359 (383)
T 3ulq_A 344 DVAKYYHERKNFQKAS 359 (383)
T ss_dssp HHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHCCCHHHHH
Confidence 9999999999999985
No 72
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.83 E-value=4e-19 Score=179.96 Aligned_cols=234 Identities=15% Similarity=0.098 Sum_probs=200.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-------
Q 006562 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDP------MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS------- 447 (640)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------- 447 (640)
..+++.+|..++..|++++|+..|+++++..+ ..+.++..+|.++...|+++.|+.++.++++..+.
T Consensus 101 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 180 (378)
T 3q15_A 101 YYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIR 180 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhh
Confidence 44678899999999999999999999997632 24678999999999999999999999999987543
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----hCCCc
Q 006562 448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPN------SADILHERGIVNFKFKDFNAAVEDLSACVK-----LDKEN 516 (640)
Q Consensus 448 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~-----~~~~~ 516 (640)
...++..+|.++...|++++|+.++++++.+.+. ...++..+|.++...|++++|+.++++++. .+|..
T Consensus 181 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~ 260 (378)
T 3q15_A 181 TIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL 260 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH
Confidence 2457889999999999999999999999987432 245788999999999999999999999999 77888
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccC-----cccHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHhCCCChHHH
Q 006562 517 KSAYTYLGLALSSIGEYKKAEEAHLKAIQLD-----RNFLEAWGHLTQFYQDLAN---SEKALECLQQVLYIDKRFSKAY 588 (640)
Q Consensus 517 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-----~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~ 588 (640)
..++..+|.++...|++++|+.++++++... |.....+..++.++...++ +.+|+.++++. ...|.....+
T Consensus 261 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~ 339 (378)
T 3q15_A 261 PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACA 339 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHH
Confidence 8999999999999999999999999999874 4445566788888888888 88888888763 2334455678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhccC
Q 006562 589 HLRGLLLHGLGQHKKAIKDLSSGLGID 615 (640)
Q Consensus 589 ~~la~~~~~~g~~~~A~~~~~~al~~~ 615 (640)
..+|.+|...|++++|..+|+++++..
T Consensus 340 ~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 340 RSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 899999999999999999999998753
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.83 E-value=2.4e-20 Score=183.34 Aligned_cols=229 Identities=15% Similarity=0.098 Sum_probs=188.0
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---
Q 006562 411 DPMYPEALIGRGTARAFQRELEAAISDFTEAIQS--------NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFE--- 479 (640)
Q Consensus 411 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--- 479 (640)
+|..+.++..+|.++...|++++|+.+++++++. .|....++..+|.++...|++++|+.++++++...
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 4566789999999999999999999999999985 56677899999999999999999999999999873
Q ss_pred -----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 006562 480 -----PNSADILHERGIVNFKFKDFNAAVEDLSACVKLD--------KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL 546 (640)
Q Consensus 480 -----p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 546 (640)
|....++..+|.++...|++++|+.++++++... |....++..+|.++...|++++|+.++++++..
T Consensus 103 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 182 (311)
T 3nf1_A 103 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182 (311)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4456789999999999999999999999999874 555788999999999999999999999999988
Q ss_pred --------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---------C------hHHHHHHHHHHHhcCCHHH
Q 006562 547 --------DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKR---------F------SKAYHLRGLLLHGLGQHKK 603 (640)
Q Consensus 547 --------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~---------~------~~~~~~la~~~~~~g~~~~ 603 (640)
.|....++..+|.++...|++++|+.++++++...|. . ...+...+..+...+.+.+
T Consensus 183 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (311)
T 3nf1_A 183 YQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGE 262 (311)
T ss_dssp HHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCC
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 6777889999999999999999999999999976432 2 2234444555566777788
Q ss_pred HHHHHHHhhccCCCCHHHHHHHHHHHHHcCCccccc
Q 006562 604 AIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAV 639 (640)
Q Consensus 604 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Al 639 (640)
|...+.++....|....++..+|.+|..+|++++|+
T Consensus 263 a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 298 (311)
T 3nf1_A 263 YGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAE 298 (311)
T ss_dssp CC---------CHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHH
Confidence 888999999889999999999999999999999985
No 74
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.83 E-value=1.6e-19 Score=175.64 Aligned_cols=220 Identities=17% Similarity=0.127 Sum_probs=171.3
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcCCHHHHH
Q 006562 396 KYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS------AGEAWKRRGQARAALGESVEAI 469 (640)
Q Consensus 396 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~ 469 (640)
++++|+..|.++ |.+|...|++++|+..|.+++...+. .+.++..+|.+|...|++++|+
T Consensus 32 ~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~ 97 (292)
T 1qqe_A 32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV 97 (292)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 478888888776 55677888888888888888876432 2567888888888888888888
Q ss_pred HHHHHHHHhCCCC------HHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHH
Q 006562 470 QDLSKALEFEPNS------ADILHERGIVNFKF-KDFNAAVEDLSACVKLDKEN------KSAYTYLGLALSSIGEYKKA 536 (640)
Q Consensus 470 ~~~~~al~~~p~~------~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A 536 (640)
.+|++++.+.|.. ..++..+|.+|... |++++|+.+|++++.+.|.. ..++..+|.++..+|++++|
T Consensus 98 ~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 177 (292)
T 1qqe_A 98 DSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEA 177 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 8888888876643 45788889999985 99999999999999887654 45788889999999999999
Q ss_pred HHHHHHHHccCcccHH-------HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHH-----HHHHHHHHH--hcCCHH
Q 006562 537 EEAHLKAIQLDRNFLE-------AWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA-----YHLRGLLLH--GLGQHK 602 (640)
Q Consensus 537 ~~~~~~a~~~~~~~~~-------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----~~~la~~~~--~~g~~~ 602 (640)
+.+|++++...|.+.. ++..+|.++..+|++++|+.+|++++.++|+.... +..++..+. ..++++
T Consensus 178 ~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~ 257 (292)
T 1qqe_A 178 SDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLS 257 (292)
T ss_dssp HHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHH
T ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999988876532 67889999999999999999999999988876543 344555554 467899
Q ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHH
Q 006562 603 KAIKDLSSGLGIDPSNIECLYLRASCY 629 (640)
Q Consensus 603 ~A~~~~~~al~~~p~~~~~~~~la~~~ 629 (640)
+|+..|++++.++|....++..+-...
T Consensus 258 ~A~~~~~~~~~l~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 258 EHCKEFDNFMRLDKWKITILNKIKESI 284 (292)
T ss_dssp HHHHHHTTSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCccHHHHHHHHHHHHHHh
Confidence 999999999999998777776665554
No 75
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.83 E-value=2e-19 Score=195.63 Aligned_cols=188 Identities=11% Similarity=-0.078 Sum_probs=176.4
Q ss_pred ccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 006562 375 KSKSISVDFRLSRGIAQVNEGKYASAISIFDQIL--------KEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446 (640)
Q Consensus 375 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l--------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 446 (640)
..+|.++..++..| ...|++++|+..|++++ +.+|++..+++.+|.++...|++++|+..|+++++.+|
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 464 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG 464 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence 45677777777766 78999999999999999 89999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 006562 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA 526 (640)
Q Consensus 447 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~ 526 (640)
++..+++.+|.++...|++++|+..|+++++++|++..++..+|.++...|++++ +..|+++++.+|++..+++.+|.+
T Consensus 465 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~ 543 (681)
T 2pzi_A 465 WRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARA 543 (681)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcC
Q 006562 527 LSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN 566 (640)
Q Consensus 527 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~ 566 (640)
+...|++++|+..|+++++.+|++..++.++|.++...++
T Consensus 544 ~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 544 RSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 9999999999999999999999999999999999977665
No 76
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.82 E-value=1.2e-19 Score=197.33 Aligned_cols=188 Identities=13% Similarity=0.056 Sum_probs=176.9
Q ss_pred HhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH--------HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 006562 409 KEDPMYPEALIGRGTARAFQRELEAAISDFTEAI--------QSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEP 480 (640)
Q Consensus 409 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al--------~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 480 (640)
..+|+++.+++..+ ...|++++|+..+++++ +.+|++..++..+|.++...|++++|+..|+++++.+|
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 464 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG 464 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence 35788888887777 78899999999999999 89999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHH
Q 006562 481 NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQF 560 (640)
Q Consensus 481 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 560 (640)
++..+++.+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++ +..|+++++.+|+++.+++++|.+
T Consensus 465 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~ 543 (681)
T 2pzi_A 465 WRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARA 543 (681)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCC
Q 006562 561 YQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQ 600 (640)
Q Consensus 561 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~ 600 (640)
+..+|++++|+..|+++++.+|++..++..+|.++...++
T Consensus 544 ~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 544 RSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 9999999999999999999999999999999999977665
No 77
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.82 E-value=2.6e-17 Score=158.58 Aligned_cols=241 Identities=17% Similarity=0.139 Sum_probs=214.4
Q ss_pred HHHHHcCChH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC----------HHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 006562 389 IAQVNEGKYA-SAISIFDQILKEDPMYPEALIGRGTARAFQRE----------LEAAISDFTEAIQSNPSAGEAWKRRGQ 457 (640)
Q Consensus 389 ~~~~~~g~~~-~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~ 457 (640)
......|++. +|+..+.+++..+|++..+|...+.+....+. +++++.++..++..+|.+..+|...+.
T Consensus 37 ~~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~w 116 (331)
T 3dss_A 37 FQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCW 116 (331)
T ss_dssp HHHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3345677776 89999999999999999999999999988876 789999999999999999999999999
Q ss_pred HHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc----
Q 006562 458 ARAALGE--SVEAIQDLSKALEFEPNSADILHERGIVNFKFKD-FNAAVEDLSACVKLDKENKSAYTYLGLALSSI---- 530 (640)
Q Consensus 458 ~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~---- 530 (640)
++...+. +++++.++.++++.+|.+..+|...+.+....|. +++++.++.+++..+|.+..+|..++.++...
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC
T ss_pred HHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcc
Confidence 9999994 8999999999999999999999999999999998 69999999999999999999999999999887
Q ss_pred ----------CCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHh-----------cCHHHHHHHHHHHHHhCCCChHHHH
Q 006562 531 ----------GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL-----------ANSEKALECLQQVLYIDKRFSKAYH 589 (640)
Q Consensus 531 ----------g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~~~~~~~~~ 589 (640)
+.+++++.++.+++..+|++..+|+.+..++... +.++++++.++++++..|++...+.
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~ 276 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLL 276 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHH
Confidence 5689999999999999999999998777666655 5689999999999999999976666
Q ss_pred HHHHHHH---hcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHH
Q 006562 590 LRGLLLH---GLGQHKKAIKDLSSGLGIDPSNIECLYLRASCY 629 (640)
Q Consensus 590 ~la~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 629 (640)
.++.+.. ..|..++...++.+.++++|.....|..++.-+
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 277 TIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp HHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 5554433 367889999999999999999887776665544
No 78
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.81 E-value=4.1e-17 Score=178.87 Aligned_cols=219 Identities=16% Similarity=0.114 Sum_probs=166.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 006562 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (640)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 460 (640)
...+...|..+...|+|++|+.+|.++ ..|..+|.++...|++++|++.++++ .+..+|...+.++.
T Consensus 1195 ~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA-----~n~~aWkev~~acv 1261 (1630)
T 1xi4_A 1195 NAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACV 1261 (1630)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHh-----CCHHHHHHHHHHHh
Confidence 345567888888888888888888885 46788888888888888888888887 45678888888888
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH--cCCHHHHHH
Q 006562 461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS--IGEYKKAEE 538 (640)
Q Consensus 461 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~--~g~~~~A~~ 538 (640)
..|+|..|..+... +.. +++.+..++..|...|.+++|+.+++.++.+++.+...+..+|.++.+ -++..++++
T Consensus 1262 e~~Ef~LA~~cgl~-Iiv---~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk 1337 (1630)
T 1xi4_A 1262 DGKEFRLAQMCGLH-IVV---HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLE 1337 (1630)
T ss_pred hhhHHHHHHHHHHh-hhc---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHH
Confidence 88888888887764 333 345556788888888888888888888888888888888777777766 456777788
Q ss_pred HHHHHHccCc-----ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------------CCCChHHHHHHHHHHHhcCCH
Q 006562 539 AHLKAIQLDR-----NFLEAWGHLTQFYQDLANSEKALECLQQVLYI------------DKRFSKAYHLRGLLLHGLGQH 601 (640)
Q Consensus 539 ~~~~a~~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------------~~~~~~~~~~la~~~~~~g~~ 601 (640)
.|...+.+.| .....|..+..+|.+-|+++.|+..+-..... .+.+++.++.....|. +..
T Consensus 1338 ~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl--~~~ 1415 (1630)
T 1xi4_A 1338 LFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFK 1415 (1630)
T ss_pred HHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHH--hhC
Confidence 8887777766 66778888888888888888888666544322 3466777777777776 566
Q ss_pred HHHHHHHHHhh--ccCCCC
Q 006562 602 KKAIKDLSSGL--GIDPSN 618 (640)
Q Consensus 602 ~~A~~~~~~al--~~~p~~ 618 (640)
..++..+..++ .++++.
T Consensus 1416 P~~lndLl~~l~~rlD~~R 1434 (1630)
T 1xi4_A 1416 PLLLNDLLMVLSPRLDHTR 1434 (1630)
T ss_pred hHHHHHHHHHhhhcCChHH
Confidence 77788887777 444443
No 79
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.81 E-value=1.1e-18 Score=160.34 Aligned_cols=184 Identities=20% Similarity=0.065 Sum_probs=82.0
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 006562 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR 459 (640)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 459 (640)
+++.++..|..++..|++++|+..|+++++.+|+++.+++..+.. .. ....+.....+|.++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~-----~~-------------~~~~~~~~~~lg~~~ 64 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVD-----KN-------------SEISSKLATELALAY 64 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSC-----TT-------------SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhc-----ch-------------hhhhHHHHHHHHHHH
Confidence 345556666666666666666666666666666665555551100 00 000011122244444
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC--HHHHH
Q 006562 460 AALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE--YKKAE 537 (640)
Q Consensus 460 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~--~~~A~ 537 (640)
...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|+ ...+.
T Consensus 65 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~ 144 (208)
T 3urz_A 65 KKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLE 144 (208)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4444444444444444444444444444444444444444444444444444444444444444444443332 22233
Q ss_pred HHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Q 006562 538 EAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK 582 (640)
Q Consensus 538 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 582 (640)
..+.+++...|. ..+++.+|.++...|++++|+..|+++++++|
T Consensus 145 ~~~~~~~~~~~~-~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P 188 (208)
T 3urz_A 145 TDYKKLSSPTKM-QYARYRDGLSKLFTTRYEKARNSLQKVILRFP 188 (208)
T ss_dssp HHHC---CCCHH-HHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSC
T ss_pred HHHHHHhCCCch-hHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 333333322211 12333444444444444444444444444444
No 80
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.81 E-value=1.5e-18 Score=159.36 Aligned_cols=166 Identities=14% Similarity=0.067 Sum_probs=97.3
Q ss_pred hHHHHHhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 006562 365 NKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444 (640)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 444 (640)
.....+..++..+|.++..++..+. .... ...+.....+|.++...|++++|+..|+++++.
T Consensus 22 ~A~~~~~~al~~~p~~~~~~~~~~~-----~~~~-------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 22 QAVSYFRQTIALNIDRTEMYYWTNV-----DKNS-------------EISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHS-----CTTS-------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCChHHHHHhhh-----cchh-------------hhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3444567777888888888776221 0000 001233445666666666666666666666666
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHhCCCcHHHHHH
Q 006562 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKD--FNAAVEDLSACVKLDKENKSAYTY 522 (640)
Q Consensus 445 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~--~~~A~~~~~~al~~~~~~~~~~~~ 522 (640)
+|+++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.+++..|+ ...+...+.+++...| ...+++.
T Consensus 84 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~ 162 (208)
T 3urz_A 84 APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK-MQYARYR 162 (208)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH-HHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc-hhHHHHH
Confidence 666666666666666666666666666666666666666666666666655443 3344555555443222 1234556
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHccCcc
Q 006562 523 LGLALSSIGEYKKAEEAHLKAIQLDRN 549 (640)
Q Consensus 523 la~~~~~~g~~~~A~~~~~~a~~~~~~ 549 (640)
+|.++...|++++|+..|++++..+|+
T Consensus 163 ~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 163 DGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 666666677777777777777777665
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.81 E-value=1.9e-18 Score=155.43 Aligned_cols=169 Identities=15% Similarity=0.239 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 006562 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (640)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 460 (640)
...++.+|..+...|++++|+..++++++..|.++.++..+|.++...|++++|+.+++++++..|.++.++..+|.++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 44555566666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 006562 461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAH 540 (640)
Q Consensus 461 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 540 (640)
..|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|...+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 66666666666666666655555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHccCcc
Q 006562 541 LKAIQLDRN 549 (640)
Q Consensus 541 ~~a~~~~~~ 549 (640)
++++...|+
T Consensus 168 ~~~~~~~~~ 176 (186)
T 3as5_A 168 KKANELDEG 176 (186)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHcCCC
Confidence 555555444
No 82
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.81 E-value=5.9e-20 Score=158.90 Aligned_cols=146 Identities=15% Similarity=0.134 Sum_probs=91.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHH
Q 006562 489 RGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSE 568 (640)
Q Consensus 489 la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~ 568 (640)
||.++...|++++|+..+++++..+|+++..++.+|.+|...|++++|+..|++++..+|+++.+|..+|.++...|+++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence 45555666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHH-HHHhhccCCCCHHHHHHHHHHHHHcCC
Q 006562 569 KALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKD-LSSGLGIDPSNIECLYLRASCYHAIGE 634 (640)
Q Consensus 569 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~p~~~~~~~~la~~~~~~g~ 634 (640)
+|+..|+++++++|+++.++..+|.++...|++++|... ++++++++|+++.++..++.++...|+
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 666666666666666666666666666666666554443 466666666666666666666665554
No 83
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.81 E-value=2.7e-18 Score=154.48 Aligned_cols=168 Identities=17% Similarity=0.202 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 006562 416 EALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFK 495 (640)
Q Consensus 416 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 495 (640)
..+..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++...|.+..++..+|.++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHH
Q 006562 496 FKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQ 575 (640)
Q Consensus 496 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 575 (640)
.|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+.+++
T Consensus 89 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 168 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFK 168 (186)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHhCCC
Q 006562 576 QVLYIDKR 583 (640)
Q Consensus 576 ~al~~~~~ 583 (640)
+++...|+
T Consensus 169 ~~~~~~~~ 176 (186)
T 3as5_A 169 KANELDEG 176 (186)
T ss_dssp HHHHHHHC
T ss_pred HHHHcCCC
Confidence 55554443
No 84
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.81 E-value=1.6e-17 Score=159.41 Aligned_cols=226 Identities=11% Similarity=0.044 Sum_probs=210.2
Q ss_pred HHhhhhccCcccHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHhCCCCHHHHHHHHHHH----HHc---cCHHHHHHHHH
Q 006562 369 CVTRISKSKSISVDFRLSRGIAQVNEG--KYASAISIFDQILKEDPMYPEALIGRGTAR----AFQ---RELEAAISDFT 439 (640)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~a~~~~~~g--~~~~A~~~~~~~l~~~~~~~~~~~~la~~~----~~~---g~~~~A~~~~~ 439 (640)
....++..+|....+|..++.++...| ++++++..++.++..+|.+..+|..++.++ ... +++++++.++.
T Consensus 55 ~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~ 134 (306)
T 3dra_A 55 ITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILE 134 (306)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHH
T ss_pred HHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHH
Confidence 567788899999999999999999999 999999999999999999999999999999 666 78999999999
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC------HHHHHHHHHHHHH
Q 006562 440 EAIQSNPSAGEAWKRRGQARAALGESV--EAIQDLSKALEFEPNSADILHERGIVNFKFKD------FNAAVEDLSACVK 511 (640)
Q Consensus 440 ~al~~~p~~~~~~~~la~~~~~~~~~~--~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~------~~~A~~~~~~al~ 511 (640)
++++.+|.+..+|...+.+....|.++ +++..+.++++.+|.+..+|...+.++...+. ++++++++.+++.
T Consensus 135 ~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~ 214 (306)
T 3dra_A 135 AMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIV 214 (306)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHH
Confidence 999999999999999999999999998 99999999999999999999999999999987 9999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHH-HHHHHHHHHccC---cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-hCCCChH
Q 006562 512 LDKENKSAYTYLGLALSSIGEYKK-AEEAHLKAIQLD---RNFLEAWGHLTQFYQDLANSEKALECLQQVLY-IDKRFSK 586 (640)
Q Consensus 512 ~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~a~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~ 586 (640)
.+|++..+|..++.++...|+... ....+.+++... |.++.++..++.++.+.|+.++|+++|+.+.+ .+|-...
T Consensus 215 ~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~ 294 (306)
T 3dra_A 215 KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSN 294 (306)
T ss_dssp HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHH
T ss_pred hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHH
Confidence 999999999999999999998555 455777777766 88899999999999999999999999999997 7999888
Q ss_pred HHHHHHHH
Q 006562 587 AYHLRGLL 594 (640)
Q Consensus 587 ~~~~la~~ 594 (640)
.|...+..
T Consensus 295 yW~~~~~~ 302 (306)
T 3dra_A 295 FWDYQISK 302 (306)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhh
Confidence 88877653
No 85
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.80 E-value=7.6e-18 Score=170.33 Aligned_cols=259 Identities=15% Similarity=0.084 Sum_probs=202.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc------H
Q 006562 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP-----EALIGRGTARAFQRELEAAISDFTEAIQSNPSA------G 449 (640)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~ 449 (640)
...+..+|..++..|++++|+..+++++...|... .++..+|.++...|++++|...+++++...|.. .
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 93 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 93 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 45667788888999999999999999998876542 267788899999999999999999998765532 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-----c
Q 006562 450 EAWKRRGQARAALGESVEAIQDLSKALEFE--------PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE-----N 516 (640)
Q Consensus 450 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-----~ 516 (640)
.++..+|.++...|++++|+..+++++... |....++..+|.++...|++++|..++++++...+. .
T Consensus 94 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 173 (373)
T 1hz4_A 94 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ 173 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGG
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHH
Confidence 346778999999999999999999998764 223456778899999999999999999999988764 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcc--cHHHH-----HHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----h
Q 006562 517 KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN--FLEAW-----GHLTQFYQDLANSEKALECLQQVLYIDKRF----S 585 (640)
Q Consensus 517 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~--~~~~~-----~~la~~~~~~g~~~~A~~~~~~al~~~~~~----~ 585 (640)
..++..+|.++...|++++|...+++++...+. .+..+ ...+.++...|++++|...+++++...|.. .
T Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 253 (373)
T 1hz4_A 174 LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQ 253 (373)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhH
Confidence 467788899999999999999999998876322 21111 134455778999999999999988766543 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhccCCC------CHHHHHHHHHHHHHcCCccccc
Q 006562 586 KAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS------NIECLYLRASCYHAIGEYREAV 639 (640)
Q Consensus 586 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~Al 639 (640)
..+..+|.++...|++++|...+++++...+. ...++..++.++...|++++|.
T Consensus 254 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 313 (373)
T 1hz4_A 254 GQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQ 313 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHH
Confidence 35678899999999999999999988876432 1257788899999999988774
No 86
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.80 E-value=1.3e-19 Score=156.62 Aligned_cols=145 Identities=12% Similarity=0.139 Sum_probs=71.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Q 006562 455 RGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYK 534 (640)
Q Consensus 455 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~ 534 (640)
||.++...|++++|+..+++++...|+++..++.+|.+|...|++++|+.+|+++++++|+++.+|..+|.++...|+++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence 34444444455555555555554444444444455555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHH-HHHHHHhCCCChHHHHHHHHHHHhcC
Q 006562 535 KAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALEC-LQQVLYIDKRFSKAYHLRGLLLHGLG 599 (640)
Q Consensus 535 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~~~~~~~~~~la~~~~~~g 599 (640)
+|+..|+++++++|+++.++..+|.++...|++++|... ++++++++|+++.++..++.++...|
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 555555555555555555555555555555555443332 34555555555555555555554444
No 87
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.80 E-value=9.4e-17 Score=162.26 Aligned_cols=230 Identities=17% Similarity=0.050 Sum_probs=177.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-----c
Q 006562 382 DFRLSRGIAQVNEGKYASAISIFDQILKED--------PMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS-----A 448 (640)
Q Consensus 382 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~ 448 (640)
..+..+|.++...|++++|+..+++++... |....++..+|.++...|++++|..++++++...+. .
T Consensus 94 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 173 (373)
T 1hz4_A 94 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ 173 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGG
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHH
Confidence 445678889999999999999999998764 334567788999999999999999999999988765 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHHhCCCc----H
Q 006562 449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPN--S-ADIL----HERGIVNFKFKDFNAAVEDLSACVKLDKEN----K 517 (640)
Q Consensus 449 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~-~~~~----~~la~~~~~~~~~~~A~~~~~~al~~~~~~----~ 517 (640)
..++..+|.++...|++++|...+++++...+. . .... ...+.++...|++++|...+++++...|.. .
T Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 253 (373)
T 1hz4_A 174 LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQ 253 (373)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhH
Confidence 457888999999999999999999999876432 2 1111 134456788999999999999998776543 3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCcc------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHH
Q 006562 518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN------FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLR 591 (640)
Q Consensus 518 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l 591 (640)
..+..++.++...|++++|...+++++...+. ...++..+|.++...|++++|...+++++...+.. ..
T Consensus 254 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~-----g~ 328 (373)
T 1hz4_A 254 GQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRT-----GF 328 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH-----CC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccc-----cH
Confidence 45678899999999999999999998876443 23577888999999999999999999998765421 11
Q ss_pred HHHHHhcCCHHHHHHHHHHhhccCCCC
Q 006562 592 GLLLHGLGQHKKAIKDLSSGLGIDPSN 618 (640)
Q Consensus 592 a~~~~~~g~~~~A~~~~~~al~~~p~~ 618 (640)
...+...| +.....+++.+...|.+
T Consensus 329 ~~~~~~~g--~~~~~ll~~~~~~~~~~ 353 (373)
T 1hz4_A 329 ISHFVIEG--EAMAQQLRQLIQLNTLP 353 (373)
T ss_dssp CHHHHTTH--HHHHHHHHHHHHTTCSC
T ss_pred HHHHHHcc--HHHHHHHHHHHhCCCCc
Confidence 22333444 56777788888877753
No 88
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.79 E-value=7.3e-19 Score=170.00 Aligned_cols=224 Identities=14% Similarity=0.078 Sum_probs=181.2
Q ss_pred HHcCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCcHHHHHHH
Q 006562 392 VNEGKYASAISIFDQILKE--------DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN--------PSAGEAWKRR 455 (640)
Q Consensus 392 ~~~g~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l 455 (640)
...|++++|+.+|+++++. .|..+.++..+|.++...|++++|+.++++++... |....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4568888888888888873 25567889999999999999999999999999873 5567789999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCcHHH
Q 006562 456 GQARAALGESVEAIQDLSKALEF--------EPNSADILHERGIVNFKFKDFNAAVEDLSACVKL--------DKENKSA 519 (640)
Q Consensus 456 a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~ 519 (640)
|.++...|++++|+.++++++.. .|....++..+|.++...|++++|+.++++++.. .|....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999999988 3556778999999999999999999999999998 6667789
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHccC---------cccHHHHHHHHHHHHHhcC------HHHHHHHHHHHHHhCCCC
Q 006562 520 YTYLGLALSSIGEYKKAEEAHLKAIQLD---------RNFLEAWGHLTQFYQDLAN------SEKALECLQQVLYIDKRF 584 (640)
Q Consensus 520 ~~~la~~~~~~g~~~~A~~~~~~a~~~~---------~~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~~~~ 584 (640)
+..+|.++...|++++|+..+++++... +.....+..++..+...+. +..+...++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 9999999999999999999999999863 3345566677766665444 333334444333344566
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHhhccC
Q 006562 585 SKAYHLRGLLLHGLGQHKKAIKDLSSGLGID 615 (640)
Q Consensus 585 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 615 (640)
+.++..+|.++...|++++|+.+|+++++..
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 7789999999999999999999999998753
No 89
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.79 E-value=5.4e-18 Score=171.63 Aligned_cols=222 Identities=15% Similarity=0.140 Sum_probs=191.8
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------H
Q 006562 417 ALIGRGTARAFQRELEAAISDFTEAIQSNP------SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS-------A 483 (640)
Q Consensus 417 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------~ 483 (640)
.++.+|..+...|++++|+.+|++++...+ ..+.++..+|.+|...|+++.|+.++++++...+.. .
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 577899999999999999999999997642 245689999999999999999999999999875532 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-----cCcccHH
Q 006562 484 DILHERGIVNFKFKDFNAAVEDLSACVKLDKE------NKSAYTYLGLALSSIGEYKKAEEAHLKAIQ-----LDRNFLE 552 (640)
Q Consensus 484 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-----~~~~~~~ 552 (640)
.++..+|.++...|++++|+.++++++...+. ...++..+|.++...|++++|+.++++++. .+|..+.
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 262 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPK 262 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHH
Confidence 47889999999999999999999999987431 246788999999999999999999999999 7888899
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-----CChHHHHHHHHHHHhcCC---HHHHHHHHHHhhccCCCCHHHHHH
Q 006562 553 AWGHLTQFYQDLANSEKALECLQQVLYIDK-----RFSKAYHLRGLLLHGLGQ---HKKAIKDLSSGLGIDPSNIECLYL 624 (640)
Q Consensus 553 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~ 624 (640)
++..+|.++...|++++|+.++++++...+ .....+..++.++...|+ +.+|+.++++. ...|....++..
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~ 341 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHH
Confidence 999999999999999999999999999854 334566778888888998 88999988873 333445578889
Q ss_pred HHHHHHHcCCccccc
Q 006562 625 RASCYHAIGEYREAV 639 (640)
Q Consensus 625 la~~~~~~g~~~~Al 639 (640)
+|.+|...|++++|+
T Consensus 342 la~~y~~~g~~~~A~ 356 (378)
T 3q15_A 342 AAAVFESSCHFEQAA 356 (378)
T ss_dssp HHHHHHHTTCHHHHH
T ss_pred HHHHHHHCCCHHHHH
Confidence 999999999999985
No 90
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.79 E-value=2.4e-18 Score=167.29 Aligned_cols=214 Identities=12% Similarity=0.005 Sum_probs=175.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc------H
Q 006562 382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPM------YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA------G 449 (640)
Q Consensus 382 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~ 449 (640)
..+...|.++...|++++|+..|.+++...+. .+.++..+|.+|...|++++|+.+|++++++.|.. .
T Consensus 38 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a 117 (292)
T 1qqe_A 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA 117 (292)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 34555678889999999999999999987432 25789999999999999999999999999987643 4
Q ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHH----
Q 006562 450 EAWKRRGQARAAL-GESVEAIQDLSKALEFEPNS------ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKS---- 518 (640)
Q Consensus 450 ~~~~~la~~~~~~-~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~---- 518 (640)
.++..+|.+|... |++++|+.+|++++++.|.. ..++..+|.++..+|++++|+.+|++++...|++..
T Consensus 118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 197 (292)
T 1qqe_A 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS 197 (292)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHH
Confidence 6888999999996 99999999999999998754 457889999999999999999999999999887643
Q ss_pred ---HHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHH-----HHHHHHHHH--HhcCHHHHHHHHHHHHHhCCCChHHH
Q 006562 519 ---AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA-----WGHLTQFYQ--DLANSEKALECLQQVLYIDKRFSKAY 588 (640)
Q Consensus 519 ---~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-----~~~la~~~~--~~g~~~~A~~~~~~al~~~~~~~~~~ 588 (640)
++..+|.++..+|++++|+..|++++.++|..... +..++..+. ..+++++|+..|++++.++|.....+
T Consensus 198 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~ 277 (292)
T 1qqe_A 198 LKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITIL 277 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHH
Confidence 67889999999999999999999999999987553 344555554 45779999999999988888766665
Q ss_pred HHHHHHH
Q 006562 589 HLRGLLL 595 (640)
Q Consensus 589 ~~la~~~ 595 (640)
..+-...
T Consensus 278 ~~~k~~~ 284 (292)
T 1qqe_A 278 NKIKESI 284 (292)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5554443
No 91
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.79 E-value=1e-17 Score=156.04 Aligned_cols=207 Identities=13% Similarity=0.056 Sum_probs=158.2
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHH---HHH
Q 006562 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGE---AWK 453 (640)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~ 453 (640)
++..++.+|..++..|++++|+..|++++...|.+ ..+++.+|.++...|++++|+..|+++++.+|+++. +++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 56778889999999999999999999999988876 468889999999999999999999999999888754 788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q 006562 454 RRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEY 533 (640)
Q Consensus 454 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~ 533 (640)
.+|.++...+.. ....+..++..+...|++++|+..|+++++..|+++.++..+..+....
T Consensus 83 ~~g~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~--- 143 (225)
T 2yhc_A 83 MRGLTNMALDDS----------------ALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLK--- 143 (225)
T ss_dssp HHHHHHHHHHC------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHH---
T ss_pred HHHHHHHhhhhh----------------hhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHH---
Confidence 888888776532 1223445677777889999999999999999999876544322221111
Q ss_pred HHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHhcCCHHHHHHHHHH
Q 006562 534 KKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFS---KAYHLRGLLLHGLGQHKKAIKDLSS 610 (640)
Q Consensus 534 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~ 610 (640)
.........+|.+|...|++++|+..|+++++..|+++ .++..+|.++..+|++++|+..+++
T Consensus 144 --------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~ 209 (225)
T 2yhc_A 144 --------------DRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKI 209 (225)
T ss_dssp --------------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --------------HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 11123446789999999999999999999999999876 6799999999999999999999999
Q ss_pred hhccCCCCH
Q 006562 611 GLGIDPSNI 619 (640)
Q Consensus 611 al~~~p~~~ 619 (640)
+....|++.
T Consensus 210 l~~~~~~~~ 218 (225)
T 2yhc_A 210 IAANSSNTL 218 (225)
T ss_dssp HHHCCSCCC
T ss_pred HHhhCCCch
Confidence 988888753
No 92
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.78 E-value=2.1e-17 Score=153.83 Aligned_cols=189 Identities=12% Similarity=0.064 Sum_probs=135.5
Q ss_pred hhHHHHHhhhhccCccc---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHccCHHHHHHH
Q 006562 364 RNKKFCVTRISKSKSIS---VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPE---ALIGRGTARAFQRELEAAISD 437 (640)
Q Consensus 364 ~~~~~~~~~~~~~~~~~---~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~---~~~~la~~~~~~g~~~~A~~~ 437 (640)
......+..+....|.+ ..+++.+|.+++..|++++|+..|+++++.+|+++. +++.+|.++...|..
T Consensus 21 ~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~------ 94 (225)
T 2yhc_A 21 RQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDS------ 94 (225)
T ss_dssp HHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhh------
Confidence 33444566666655554 578999999999999999999999999999999864 889999999887642
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcH
Q 006562 438 FTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK 517 (640)
Q Consensus 438 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 517 (640)
....+..++..+...|++++|+..|+++++..|+++.++..+..+....+ ...
T Consensus 95 ----------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~-----------------~~~ 147 (225)
T 2yhc_A 95 ----------ALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKD-----------------RLA 147 (225)
T ss_dssp -----------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHH-----------------HHH
T ss_pred ----------hhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHH-----------------HHH
Confidence 11234456777777888999999999999999988655433222111110 112
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccH---HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh
Q 006562 518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL---EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFS 585 (640)
Q Consensus 518 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 585 (640)
...+.+|.++...|++++|+..|++++...|+++ .++..+|.++..+|++++|+..++++....|++.
T Consensus 148 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 148 KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 2345678888889999999999999998888775 6788899999999999999999988888777653
No 93
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.77 E-value=1.2e-16 Score=154.48 Aligned_cols=239 Identities=15% Similarity=0.087 Sum_probs=209.0
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-C-CHH
Q 006562 390 AQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQR-ELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL-G-ESV 466 (640)
Q Consensus 390 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-~-~~~ 466 (640)
.....+..++|+..+.+++..+|++..+|..++.++...| .+++++..+.+++..+|++..+|...+.++... + +++
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCH
T ss_pred HHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChH
Confidence 3444556679999999999999999999999999999999 599999999999999999999999999999998 8 899
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC------
Q 006562 467 EAIQDLSKALEFEPNSADILHERGIVNFKFKDFN--------AAVEDLSACVKLDKENKSAYTYLGLALSSIGE------ 532 (640)
Q Consensus 467 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~--------~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~------ 532 (640)
+++..+.++++.+|.+..+|...+.++...|.++ ++++++.++++.+|.+..+|..++.++...+.
T Consensus 143 ~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 143 SEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchH
Confidence 9999999999999999999999999999998887 99999999999999999999999999999887
Q ss_pred -HHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCH--------------------HHHHHHHHHHHHhC------CCCh
Q 006562 533 -YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANS--------------------EKALECLQQVLYID------KRFS 585 (640)
Q Consensus 533 -~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~--------------------~~A~~~~~~al~~~------~~~~ 585 (640)
+++++.++.+++..+|++..+|.++..++...|+. ..-...+...+... +.++
T Consensus 223 ~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 302 (349)
T 3q7a_A 223 SLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVP 302 (349)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcH
Confidence 79999999999999999999999999999887764 22222222222222 4678
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhh-ccCCCCHHHHHHHHHH
Q 006562 586 KAYHLRGLLLHGLGQHKKAIKDLSSGL-GIDPSNIECLYLRASC 628 (640)
Q Consensus 586 ~~~~~la~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~la~~ 628 (640)
.++..++.+|...|+.++|.+.++... +.+|-....|...+..
T Consensus 303 ~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~~ 346 (349)
T 3q7a_A 303 LALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRRE 346 (349)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHHh
Confidence 899999999999999999999999987 7899888888766654
No 94
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.76 E-value=1.3e-18 Score=171.69 Aligned_cols=176 Identities=16% Similarity=0.161 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 006562 383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL 462 (640)
Q Consensus 383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 462 (640)
.+...|..++..|.|++|+.+|.++ ..|..+|.++.++|++++|++.++++ .++.+|...+.++...
T Consensus 124 a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~ 190 (449)
T 1b89_A 124 HIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDG 190 (449)
T ss_dssp -------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHc
Confidence 5556666777777777777777655 34666677777777777777777766 3566666666677777
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH--cCCHHHHHHHH
Q 006562 463 GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS--IGEYKKAEEAH 540 (640)
Q Consensus 463 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~ 540 (640)
|+++.|..+... +.. +++-...++.+|.+.|++++|+.++++++.+++....++..+|.+|.+ -++..+.++.|
T Consensus 191 ~ef~lA~~~~l~-L~~---~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~ 266 (449)
T 1b89_A 191 KEFRLAQMCGLH-IVV---HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELF 266 (449)
T ss_dssp TCHHHHHHTTTT-TTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH-HHh---CHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 777777555543 222 233344566666777777777777777777776666666666666655 34555556666
Q ss_pred HHHHccCc-----ccHHHHHHHHHHHHHhcCHHHHHHHHH
Q 006562 541 LKAIQLDR-----NFLEAWGHLTQFYQDLANSEKALECLQ 575 (640)
Q Consensus 541 ~~a~~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~ 575 (640)
...+.+.| ..+..|..+..+|...++++.|+..+-
T Consensus 267 ~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~ 306 (449)
T 1b89_A 267 WSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMM 306 (449)
T ss_dssp STTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 55555555 555666666677777777776665443
No 95
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.76 E-value=3.3e-17 Score=158.30 Aligned_cols=231 Identities=12% Similarity=0.044 Sum_probs=185.3
Q ss_pred CCCCCCchHHHHHhhHHHhhhhHHHHHHHHhhHHHHHhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---
Q 006562 334 SDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKE--- 410 (640)
Q Consensus 334 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--- 410 (640)
..++++.|+..+.+....+.. ......|..+..+..+|.++...|++++|+..|+++++.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~-----------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 75 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEK-----------------TSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREK 75 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHH-----------------HHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHH-----------------hcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 466788888777765543321 112234667889999999999999999999999999987
Q ss_pred -----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006562 411 -----DPMYPEALIGRGTARAFQRELEAAISDFTEAIQS--------NPSAGEAWKRRGQARAALGESVEAIQDLSKALE 477 (640)
Q Consensus 411 -----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 477 (640)
.|....++..+|.++...|++++|+.++++++.. .|....++..+|.++...|++++|+.++++++.
T Consensus 76 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 155 (283)
T 3edt_B 76 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALE 155 (283)
T ss_dssp HTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3556788999999999999999999999999988 466678999999999999999999999999999
Q ss_pred h--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---------CCCcHHHHHHHHHHHHHcCC------HH
Q 006562 478 F--------EPNSADILHERGIVNFKFKDFNAAVEDLSACVKL---------DKENKSAYTYLGLALSSIGE------YK 534 (640)
Q Consensus 478 ~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---------~~~~~~~~~~la~~~~~~g~------~~ 534 (640)
. .|....++..+|.++...|++++|+.++++++.. .+.....+..++..+...+. +.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (283)
T 3edt_B 156 IYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYG 235 (283)
T ss_dssp HHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-----
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHH
Confidence 8 6666788999999999999999999999999987 34445667777776665443 44
Q ss_pred HHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Q 006562 535 KAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYID 581 (640)
Q Consensus 535 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 581 (640)
.+...+.......|..+.++..+|.++...|++++|+.+++++++..
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 236 EYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp -------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 55555555555567778899999999999999999999999998753
No 96
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.75 E-value=9.5e-19 Score=172.74 Aligned_cols=203 Identities=16% Similarity=0.124 Sum_probs=145.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 006562 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGE 464 (640)
Q Consensus 385 ~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 464 (640)
..++.+|.+.|++.++.++++ .|+ ..+|..+|..+...|.|++|..+|.++ ..|..+|.++.++|+
T Consensus 98 ~~Li~~Y~Klg~l~e~e~f~~-----~pn-~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~ 163 (449)
T 1b89_A 98 TELIFALAKTNRLAELEEFIN-----GPN-NAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGE 163 (449)
T ss_dssp -----------CHHHHTTTTT-----CC-----------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTC
T ss_pred HHHHHHHHHhCCHHHHHHHHc-----CCc-HHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhcc
Confidence 356788888999999888875 243 459999999999999999999999976 367789999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006562 465 SVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAI 544 (640)
Q Consensus 465 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 544 (640)
+++|++.++++ .++.+|...+.++...|+++.|..+... +..+| .-...+...|...|++++|+.++++++
T Consensus 164 yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~a---d~l~~lv~~Yek~G~~eEai~lLe~aL 234 (449)
T 1b89_A 164 YQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHA---DELEELINYYQDRGYFEELITMLEAAL 234 (449)
T ss_dssp HHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCH---hhHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 99999999998 4788999999999999999999777665 22444 344568888999999999999999999
Q ss_pred ccCcccHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHhCC-----CChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006562 545 QLDRNFLEAWGHLTQFYQD--LANSEKALECLQQVLYIDK-----RFSKAYHLRGLLLHGLGQHKKAIKDLSS 610 (640)
Q Consensus 545 ~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~ 610 (640)
..++.....+..+|.+|.+ .++..+.++.|...+.+.| ..+..|..+..+|...++++.|+..+-.
T Consensus 235 ~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~ 307 (449)
T 1b89_A 235 GLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN 307 (449)
T ss_dssp TSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHh
Confidence 9999999999999888865 4667777777777776666 6778899999999999999999886654
No 97
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.74 E-value=2.1e-17 Score=137.78 Aligned_cols=118 Identities=20% Similarity=0.247 Sum_probs=85.2
Q ss_pred HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHH
Q 006562 511 KLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHL 590 (640)
Q Consensus 511 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 590 (640)
.++|+....+..+|..++..|++++|+..|++++..+|.++.+|..+|.++..+|++++|+..|+++++++|+++.+|+.
T Consensus 7 ~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 86 (126)
T 4gco_A 7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIR 86 (126)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 45666666677777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHH
Q 006562 591 RGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASC 628 (640)
Q Consensus 591 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 628 (640)
+|.++..+|++++|+..|+++++++|++.+++..++.+
T Consensus 87 lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 87 KAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 77777777777777777777777777777777766655
No 98
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.74 E-value=6.2e-17 Score=134.93 Aligned_cols=119 Identities=16% Similarity=0.221 Sum_probs=89.5
Q ss_pred hccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHH
Q 006562 374 SKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWK 453 (640)
Q Consensus 374 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 453 (640)
...+|..+..+..+|..++..|+|++|+..|+++++.+|.++.++..+|.++..+|++++|+..|+++++++|+++.+++
T Consensus 6 a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 6 AYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp -CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 34566667777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 006562 454 RRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIV 492 (640)
Q Consensus 454 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 492 (640)
.+|.++..+|++++|+..|+++++++|++..++..++.+
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 777777777777777777777777777777777766654
No 99
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.73 E-value=1.9e-17 Score=147.65 Aligned_cols=160 Identities=11% Similarity=0.020 Sum_probs=69.4
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hc
Q 006562 418 LIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNF-KF 496 (640)
Q Consensus 418 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~ 496 (640)
++.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...| ++..+..++.+.. ..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhh
Confidence 333444444444444444444444444444444444444444444444444444444444444 3333222222211 11
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccc--HHHHHHHHHHHHHhcCHHHHHHHH
Q 006562 497 KDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF--LEAWGHLTQFYQDLANSEKALECL 574 (640)
Q Consensus 497 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~ 574 (640)
+....|+..++++++.+|+++.+++.+|.++...|++++|+..|++++..+|.. +.++..+|.++...|+.++|+..|
T Consensus 88 ~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 88 AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 122234444445555555555555555555555555555555555555444433 334444555555555555555554
Q ss_pred HHHH
Q 006562 575 QQVL 578 (640)
Q Consensus 575 ~~al 578 (640)
++++
T Consensus 168 ~~al 171 (176)
T 2r5s_A 168 RRQL 171 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 100
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.73 E-value=1.6e-17 Score=148.21 Aligned_cols=167 Identities=11% Similarity=0.067 Sum_probs=149.0
Q ss_pred cccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 006562 378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQ 457 (640)
Q Consensus 378 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 457 (640)
|...+.++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..+++++...| ++..+..++.
T Consensus 3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~ 81 (176)
T 2r5s_A 3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAK 81 (176)
T ss_dssp ---CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHH
Confidence 334556788999999999999999999999999999999999999999999999999999999999999 8777666665
Q ss_pred HHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHcCCHH
Q 006562 458 ARA-ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN--KSAYTYLGLALSSIGEYK 534 (640)
Q Consensus 458 ~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~la~~~~~~g~~~ 534 (640)
+.. ..+...+|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+. +.++..+|.++...|+.+
T Consensus 82 ~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 161 (176)
T 2r5s_A 82 LELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGN 161 (176)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSC
T ss_pred HHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCC
Confidence 533 33344568999999999999999999999999999999999999999999999875 669999999999999999
Q ss_pred HHHHHHHHHHc
Q 006562 535 KAEEAHLKAIQ 545 (640)
Q Consensus 535 ~A~~~~~~a~~ 545 (640)
+|+..|++++.
T Consensus 162 ~A~~~y~~al~ 172 (176)
T 2r5s_A 162 AIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 99999998874
No 101
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.72 E-value=1.9e-16 Score=153.17 Aligned_cols=167 Identities=16% Similarity=0.086 Sum_probs=78.9
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 006562 412 PMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGI 491 (640)
Q Consensus 412 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 491 (640)
|.+...++.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++..+|+........+.
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 193 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI 193 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence 44444444444444444444444444444444444444444444444444444444444444444444433333333333
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccc--HHHHHHHHHHHHHhcCHHH
Q 006562 492 VNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF--LEAWGHLTQFYQDLANSEK 569 (640)
Q Consensus 492 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~la~~~~~~g~~~~ 569 (640)
.+...++.+.|+..+++++..+|+++.+++.+|.++...|++++|+..|.+++..+|++ ..++..++.++...|+.++
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 34444444444444444444444444444444444444444444444444444444444 4444444444444444444
Q ss_pred HHHHHHHHH
Q 006562 570 ALECLQQVL 578 (640)
Q Consensus 570 A~~~~~~al 578 (640)
|+..|++++
T Consensus 274 a~~~~r~al 282 (287)
T 3qou_A 274 LASXYRRQL 282 (287)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
No 102
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.72 E-value=8.6e-17 Score=157.45 Aligned_cols=161 Identities=16% Similarity=0.129 Sum_probs=106.3
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHH
Q 006562 422 GTARAFQRELEAAISDFTEAIQSNPSA------GEAWKRRGQARAALGESVEAIQDLSKALEFEPNS------ADILHER 489 (640)
Q Consensus 422 a~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l 489 (640)
|.+|...|++++|+..|.+++...+.. ..++..+|.+|...|++++|+.+|++++.+.+.. ..++..+
T Consensus 43 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 122 (307)
T 2ifu_A 43 AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRA 122 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 556667777777777777777664321 3466667777777777777777777777664321 3456667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccc------HHHHHHH
Q 006562 490 GIVNFKFKDFNAAVEDLSACVKLDKEN------KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF------LEAWGHL 557 (640)
Q Consensus 490 a~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~------~~~~~~l 557 (640)
|.+|.. |++++|+.+|++++.+.|.. ..++..+|.++..+|++++|+.+|++++.+.|.. ..++..+
T Consensus 123 g~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 201 (307)
T 2ifu_A 123 GKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQ 201 (307)
T ss_dssp HHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence 777766 77777777777777665432 3566667777777777777777777777665433 2355666
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCC
Q 006562 558 TQFYQDLANSEKALECLQQVLYIDKRF 584 (640)
Q Consensus 558 a~~~~~~g~~~~A~~~~~~al~~~~~~ 584 (640)
|.++..+|++++|+.+|++++ .+|..
T Consensus 202 g~~~~~~g~~~~A~~~~~~al-~~p~~ 227 (307)
T 2ifu_A 202 VLVQLHRADYVAAQKCVRESY-SIPGF 227 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHT-TSTTS
T ss_pred HHHHHHcCCHHHHHHHHHHHh-CCCCC
Confidence 667777777777777777777 66644
No 103
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.72 E-value=2.5e-16 Score=152.27 Aligned_cols=169 Identities=13% Similarity=0.034 Sum_probs=160.7
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 006562 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLG 524 (640)
Q Consensus 445 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la 524 (640)
.|.+...+..+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|+........+
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 48889999999999999999999999999999999999999999999999999999999999999999998777777788
Q ss_pred HHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHhcCCHH
Q 006562 525 LALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF--SKAYHLRGLLLHGLGQHK 602 (640)
Q Consensus 525 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~la~~~~~~g~~~ 602 (640)
..+...++.++|+..+++++..+|+++.+++.+|.++...|++++|+..|.+++..+|++ ..++..++.++...|+.+
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 888899999999999999999999999999999999999999999999999999999988 889999999999999999
Q ss_pred HHHHHHHHhhc
Q 006562 603 KAIKDLSSGLG 613 (640)
Q Consensus 603 ~A~~~~~~al~ 613 (640)
+|...|++++.
T Consensus 273 ~a~~~~r~al~ 283 (287)
T 3qou_A 273 ALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 99999999874
No 104
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.72 E-value=7.1e-15 Score=141.59 Aligned_cols=228 Identities=10% Similarity=0.022 Sum_probs=201.0
Q ss_pred HHHhhhhccCcccHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC--HHHHH
Q 006562 368 FCVTRISKSKSISVDFRLSRGIAQVNEGK----------YASAISIFDQILKEDPMYPEALIGRGTARAFQRE--LEAAI 435 (640)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~a~~~~~~g~----------~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~--~~~A~ 435 (640)
.....++..+|.+..+|..++.++...+. +.+++.+++.++..+|.+..+|...+.++...|. +++++
T Consensus 51 ~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL 130 (331)
T 3dss_A 51 ELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWAREL 130 (331)
T ss_dssp HHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHH
T ss_pred HHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHH
Confidence 34677889999999999999999988776 7899999999999999999999999999999994 99999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc--------------CCHH
Q 006562 436 SDFTEAIQSNPSAGEAWKRRGQARAALGE-SVEAIQDLSKALEFEPNSADILHERGIVNFKF--------------KDFN 500 (640)
Q Consensus 436 ~~~~~al~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--------------~~~~ 500 (640)
.++.++++.+|.+..+|...+.+....|. ++++++++.+++..+|.+..+|..++.++... +.++
T Consensus 131 ~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~ 210 (331)
T 3dss_A 131 ELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLL 210 (331)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHH
Confidence 99999999999999999999999999998 69999999999999999999999999999887 5689
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHccCcccHHHHHHHHHHHH---HhcC
Q 006562 501 AAVEDLSACVKLDKENKSAYTYLGLALSSI-----------GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQ---DLAN 566 (640)
Q Consensus 501 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~---~~g~ 566 (640)
++++++.+++..+|++..+|+.+..++... +.++++++.+.++++..|++...+..++.+.. ..|.
T Consensus 211 eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~ 290 (331)
T 3dss_A 211 KELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLY 290 (331)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTT
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhccccc
Confidence 999999999999999999998777766665 46899999999999999998655544444332 2577
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 006562 567 SEKALECLQQVLYIDKRFSKAYHLRGLLL 595 (640)
Q Consensus 567 ~~~A~~~~~~al~~~~~~~~~~~~la~~~ 595 (640)
.++...++.+.++++|.....|..++.-+
T Consensus 291 ~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 291 EKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 88999999999999998877776665543
No 105
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.70 E-value=4.2e-16 Score=166.73 Aligned_cols=165 Identities=15% Similarity=0.045 Sum_probs=128.3
Q ss_pred cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006562 394 EGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLS 473 (640)
Q Consensus 394 ~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 473 (640)
.|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..++
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 47788888888888888888888888899998888999999999999988888888888888888888899999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc---CCHHHHHHHHHHHHccCccc
Q 006562 474 KALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSI---GEYKKAEEAHLKAIQLDRNF 550 (640)
Q Consensus 474 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~a~~~~~~~ 550 (640)
++++.+|++..++..+|.++...|++++|+..++++++.+|++..++..+|.++... |++++|...+++++..+|..
T Consensus 82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA 161 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence 988888888888888888888888888888888888888888888888888888888 88888888888888888887
Q ss_pred HHHHHHHH
Q 006562 551 LEAWGHLT 558 (640)
Q Consensus 551 ~~~~~~la 558 (640)
...+..++
T Consensus 162 ~~~~~~l~ 169 (568)
T 2vsy_A 162 VEPFAFLS 169 (568)
T ss_dssp SCHHHHTT
T ss_pred cChHHHhC
Confidence 76666655
No 106
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.70 E-value=4.4e-16 Score=166.57 Aligned_cols=165 Identities=15% Similarity=0.176 Sum_probs=138.7
Q ss_pred ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006562 428 QRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLS 507 (640)
Q Consensus 428 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 507 (640)
.|++++|+..|+++++.+|.+..++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..++
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHhCCCC
Q 006562 508 ACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL---ANSEKALECLQQVLYIDKRF 584 (640)
Q Consensus 508 ~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~~~~ 584 (640)
++++.+|++..++..+|.++...|++++|+..|+++++.+|+++.++..+|.++... |++++|+..++++++.+|..
T Consensus 82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA 161 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence 999999999999999999999999999999999999999999999999999999999 99999999999999999988
Q ss_pred hHHHHHHH
Q 006562 585 SKAYHLRG 592 (640)
Q Consensus 585 ~~~~~~la 592 (640)
...+..++
T Consensus 162 ~~~~~~l~ 169 (568)
T 2vsy_A 162 VEPFAFLS 169 (568)
T ss_dssp SCHHHHTT
T ss_pred cChHHHhC
Confidence 77776666
No 107
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.69 E-value=1.4e-15 Score=146.94 Aligned_cols=227 Identities=14% Similarity=0.110 Sum_probs=195.8
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHH
Q 006562 396 KYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG-ESVEAIQDLSK 474 (640)
Q Consensus 396 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~ 474 (640)
+|.++..++..++... +..++|+..+.+++..+|++..+|...+.++...| .+++++..+..
T Consensus 52 ~y~~~~~~~r~~~~~~-----------------e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~ 114 (349)
T 3q7a_A 52 EYKDAMDYFRAIAAKE-----------------EKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNE 114 (349)
T ss_dssp HHHHHHHHHHHHHHTT-----------------CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC-----------------CCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 4566666666555543 44568999999999999999999999999999999 59999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHhc-C-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH--------HHHHHHHHHH
Q 006562 475 ALEFEPNSADILHERGIVNFKF-K-DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYK--------KAEEAHLKAI 544 (640)
Q Consensus 475 al~~~p~~~~~~~~la~~~~~~-~-~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~--------~A~~~~~~a~ 544 (640)
++..+|++..+|...+.++... + ++++++.++.++++.+|.+..+|...+.+....|.++ +++.++.+++
T Consensus 115 ~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I 194 (349)
T 3q7a_A 115 FAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEML 194 (349)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHH
Confidence 9999999999999999999998 8 9999999999999999999999999999999988887 9999999999
Q ss_pred ccCcccHHHHHHHHHHHHHhcC-------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCH----------------
Q 006562 545 QLDRNFLEAWGHLTQFYQDLAN-------SEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQH---------------- 601 (640)
Q Consensus 545 ~~~~~~~~~~~~la~~~~~~g~-------~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~---------------- 601 (640)
+.+|.+..+|...+.++...+. ++++++++.+++..+|++..+|..+..++...|+.
T Consensus 195 ~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~ 274 (349)
T 3q7a_A 195 RVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKL 274 (349)
T ss_dssp HHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC---
T ss_pred HhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccc
Confidence 9999999999999999999887 79999999999999999999999999999887764
Q ss_pred ----HHHHHHHHHhhccC------CCCHHHHHHHHHHHHHcCCccccc
Q 006562 602 ----KKAIKDLSSGLGID------PSNIECLYLRASCYHAIGEYREAV 639 (640)
Q Consensus 602 ----~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~Al 639 (640)
..-.......+... +..+.++..++.+|...|+.++|+
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~ 322 (349)
T 3q7a_A 275 NPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAA 322 (349)
T ss_dssp -----------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHH
Confidence 23333333333322 467889999999999999888775
No 108
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.69 E-value=6.2e-17 Score=138.86 Aligned_cols=116 Identities=12% Similarity=-0.015 Sum_probs=89.2
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Q 006562 504 EDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKR 583 (640)
Q Consensus 504 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 583 (640)
..+++++.++|+++.+++.+|.++...|++++|+..|++++..+|.++.+|..+|.++..+|++++|+..|++++.++|+
T Consensus 23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~ 102 (151)
T 3gyz_A 23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN 102 (151)
T ss_dssp CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS
T ss_pred CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC
Confidence 44556666777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCH
Q 006562 584 FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI 619 (640)
Q Consensus 584 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 619 (640)
++.+++.+|.++..+|++++|+..|++++++.|+.+
T Consensus 103 ~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 103 DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 777777777777777777777777777777777644
No 109
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.69 E-value=1.3e-16 Score=148.96 Aligned_cols=207 Identities=14% Similarity=0.070 Sum_probs=152.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHH-------HHHHHHccCHHHHHHHHHHHHHhCCCcH------
Q 006562 383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGR-------GTARAFQRELEAAISDFTEAIQSNPSAG------ 449 (640)
Q Consensus 383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~~p~~~------ 449 (640)
.++..|.-+ ..+++..|...|.++++.+|+..++|..+ +.++...++..+++..+.+.+.+.|...
T Consensus 9 ~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~ 87 (282)
T 4f3v_A 9 SLFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAI 87 (282)
T ss_dssp HHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEEC
T ss_pred HHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhcc
Confidence 345555555 57888888889998888888888888888 7888888888888888888888766532
Q ss_pred ---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 006562 450 ---------------EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDK 514 (640)
Q Consensus 450 ---------------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 514 (640)
++...++.++...|++++|.+.|..++...|.+. ..+.+|.+++..++|++|+..|+.+....+
T Consensus 88 ~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d 166 (282)
T 4f3v_A 88 GGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPD 166 (282)
T ss_dssp CTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSC
T ss_pred CCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCC
Confidence 3444567777778888888888877777777666 777778888888888888888876655421
Q ss_pred Cc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHccC--cc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHH
Q 006562 515 EN--KSAYTYLGLALSSIGEYKKAEEAHLKAIQLD--RN-FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYH 589 (640)
Q Consensus 515 ~~--~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 589 (640)
.. ..+++.+|.++..+|++++|+.+|++++... |. .+.+++.+|.++..+|+.++|...|++++..+|+ +.++.
T Consensus 167 ~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~ 245 (282)
T 4f3v_A 167 KFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAA 245 (282)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHH
T ss_pred cccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHH
Confidence 11 3467777888888888888888888776443 44 5567777777777788888888888877777777 66555
Q ss_pred HHH
Q 006562 590 LRG 592 (640)
Q Consensus 590 ~la 592 (640)
.+.
T Consensus 246 aL~ 248 (282)
T 4f3v_A 246 ALK 248 (282)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
No 110
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.69 E-value=8.2e-13 Score=140.90 Aligned_cols=223 Identities=9% Similarity=-0.020 Sum_probs=198.7
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHH-HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006562 398 ASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAI-SDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKAL 476 (640)
Q Consensus 398 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 476 (640)
......|++++...|.++..|+..+..+...|+.++|. ..|++++...|.+...|..++.+....|+++.|...|++++
T Consensus 326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 326 ARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 44667899999999999999999999999999999997 99999999999999999999999999999999999999999
Q ss_pred HhC-----------CC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcC-C
Q 006562 477 EFE-----------PN-----------SADILHERGIVNFKFKDFNAAVEDLSACVKL-DKENKSAYTYLGLALSSIG-E 532 (640)
Q Consensus 477 ~~~-----------p~-----------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~la~~~~~~g-~ 532 (640)
... |. ...+|...+.+..+.|..+.|...|.+|++. .+....+|...+.+....+ +
T Consensus 406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d 485 (679)
T 4e6h_A 406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKD 485 (679)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSC
T ss_pred HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCC
Confidence 752 43 2457888889889999999999999999988 5455677777787777765 4
Q ss_pred HHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHhcCCHHHHHHHHH
Q 006562 533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKR---FSKAYHLRGLLLHGLGQHKKAIKDLS 609 (640)
Q Consensus 533 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~ 609 (640)
++.|..+|+++++..|+++..|...+......|+.+.|..+|++++...|+ ....|..........|+.+.+....+
T Consensus 486 ~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~ 565 (679)
T 4e6h_A 486 TKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEK 565 (679)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999998873 55688888888999999999999999
Q ss_pred HhhccCCCCHH
Q 006562 610 SGLGIDPSNIE 620 (640)
Q Consensus 610 ~al~~~p~~~~ 620 (640)
++.+..|++..
T Consensus 566 R~~~~~P~~~~ 576 (679)
T 4e6h_A 566 RFFEKFPEVNK 576 (679)
T ss_dssp HHHHHSTTCCH
T ss_pred HHHHhCCCCcH
Confidence 99999998754
No 111
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.68 E-value=3e-16 Score=132.34 Aligned_cols=110 Identities=15% Similarity=0.105 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHcccCc--------h-----hHHHhHHHHHHhhhcHHHHHHHHHHHHHc-----
Q 006562 37 ITARIELAKLCSLRNWSKAIRILDSLLAQSYE--------I-----QDICNRAFCYSQLELHKHVIRDCDKALQL----- 98 (640)
Q Consensus 37 ~~~~~~~~~~~~~~~y~~Ai~~y~~ai~~~~~--------~-----~~~~~~A~~~~~~g~~~~Ai~~~~~al~~----- 98 (640)
......+..+|..|+|++|+.+|++||+++|+ . .+|+|+|.|+.++|+|++|+..|++||++
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 33344556779999999999999999999976 2 27999999999999999999999999999
Q ss_pred --CCCchHHH----HHHHHHHHHcCCHHHHHHHHHHHHhhccCChHHHHHHHhH
Q 006562 99 --DPTLLQAY----ILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLEL 146 (640)
Q Consensus 99 --~P~~~~a~----~~~g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l 146 (640)
+|++.++| +++|.++..+|++++|+.+|++|+++.|+.......+..+
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~ 145 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERM 145 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 99999999 9999999999999999999999999998886654444333
No 112
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.68 E-value=1.6e-16 Score=148.46 Aligned_cols=206 Identities=14% Similarity=0.021 Sum_probs=180.5
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHhCCCCH-------
Q 006562 418 LIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR-------GQARAALGESVEAIQDLSKALEFEPNSA------- 483 (640)
Q Consensus 418 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-------a~~~~~~~~~~~A~~~~~~al~~~p~~~------- 483 (640)
++..|.-+ ..+++..|...|.+++..+|...++|..+ +.++...++..+++..+.+.+.+.|...
T Consensus 10 ~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~ 88 (282)
T 4f3v_A 10 LFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIG 88 (282)
T ss_dssp HHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECC
T ss_pred HHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccC
Confidence 34445554 57999999999999999999999999999 8999999999999999999999776542
Q ss_pred --------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcc
Q 006562 484 --------------DILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549 (640)
Q Consensus 484 --------------~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 549 (640)
++...++.++...|++++|.+.|..++...|.+. ..+.+|.++...+++++|+..|+++....+.
T Consensus 89 g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~ 167 (282)
T 4f3v_A 89 GLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDK 167 (282)
T ss_dssp TTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCH
T ss_pred CcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCc
Confidence 4556688999999999999999999999999888 9999999999999999999999988775322
Q ss_pred -c-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHH
Q 006562 550 -F-LEAWGHLTQFYQDLANSEKALECLQQVLYID--KR-FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYL 624 (640)
Q Consensus 550 -~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 624 (640)
. ..+++++|.++..+|++++|+..|++++... |. .+.+++.+|.++..+|+.++|...|++++..+|+ ..++..
T Consensus 168 ~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~a 246 (282)
T 4f3v_A 168 FLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAA 246 (282)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHH
Confidence 2 4589999999999999999999999998544 54 5679999999999999999999999999999999 877766
Q ss_pred HH
Q 006562 625 RA 626 (640)
Q Consensus 625 la 626 (640)
|.
T Consensus 247 L~ 248 (282)
T 4f3v_A 247 LK 248 (282)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 113
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.68 E-value=6e-15 Score=135.61 Aligned_cols=174 Identities=17% Similarity=0.086 Sum_probs=105.9
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHH
Q 006562 434 AISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFK----DFNAAVEDLSAC 509 (640)
Q Consensus 434 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~----~~~~A~~~~~~a 509 (640)
|+.+|+++.+. .++.+++.+|.+|...+++++|+.+|+++.+. .++.+++.+|.+|.. + ++++|+.+|+++
T Consensus 5 A~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 5 PGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp TTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 44555555543 45555556666665566666666666665543 345566666666655 4 566666666666
Q ss_pred HHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHccCc--ccHHHHHHHHHHHHH----hcCHHHHHHHHHHHHH
Q 006562 510 VKLDKENKSAYTYLGLALSS----IGEYKKAEEAHLKAIQLDR--NFLEAWGHLTQFYQD----LANSEKALECLQQVLY 579 (640)
Q Consensus 510 l~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~--~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~ 579 (640)
.+ +.++.+++.+|.+|.. .+++++|+.+|+++....+ ..+.+++.+|.+|.. .+++++|+.+|+++.+
T Consensus 80 ~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 157 (212)
T 3rjv_A 80 VE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS 157 (212)
T ss_dssp HH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred HH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 43 3456666666666665 5666666666666666655 346666666666666 6666677777776666
Q ss_pred hCCCChHHHHHHHHHHHhc-C-----CHHHHHHHHHHhhccC
Q 006562 580 IDKRFSKAYHLRGLLLHGL-G-----QHKKAIKDLSSGLGID 615 (640)
Q Consensus 580 ~~~~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~al~~~ 615 (640)
. |.++.+++.+|.+|... | ++++|+.+|+++.+..
T Consensus 158 ~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 158 L-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp T-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred c-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 5 45566666666666543 2 6677777777766653
No 114
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.67 E-value=2.2e-16 Score=135.41 Aligned_cols=111 Identities=13% Similarity=0.002 Sum_probs=50.1
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHH
Q 006562 439 TEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKS 518 (640)
Q Consensus 439 ~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~ 518 (640)
++++..+|+++.+++.+|.++...|++++|+..|++++..+|.++.+|..+|.++...|++++|+..|++++.++|+++.
T Consensus 26 ~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~ 105 (151)
T 3gyz_A 26 KDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYT 105 (151)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcH
Confidence 33334444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccCcc
Q 006562 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549 (640)
Q Consensus 519 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 549 (640)
+++.+|.++..+|++++|+..|++++...|+
T Consensus 106 ~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 106 PVFHTGQCQLRLKAPLKAKECFELVIQHSND 136 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 4444444444444444444444444444443
No 115
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.67 E-value=6.4e-15 Score=135.42 Aligned_cols=185 Identities=19% Similarity=0.037 Sum_probs=157.7
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC----CHHHHHHHHH
Q 006562 398 ASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG----ESVEAIQDLS 473 (640)
Q Consensus 398 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~----~~~~A~~~~~ 473 (640)
.+|+.+|+++.+. .++.+++.+|.+|...+++++|+.+|+++.+. .++.+++.+|.+|.. + ++++|+.+|+
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 3577888888875 67999999999999999999999999999875 578899999999988 7 8999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHH----cCCHHHHHHHHHHH
Q 006562 474 KALEFEPNSADILHERGIVNFK----FKDFNAAVEDLSACVKLDK--ENKSAYTYLGLALSS----IGEYKKAEEAHLKA 543 (640)
Q Consensus 474 ~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~----~g~~~~A~~~~~~a 543 (640)
++.+ +.++.+++.+|.+|.. .+++++|+.+|+++.+..| .++.+++.+|.+|.. .+++++|+.+|+++
T Consensus 78 ~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 78 KAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp HHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred HHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 9965 5688999999999988 8899999999999999887 358999999999999 88999999999999
Q ss_pred HccCcccHHHHHHHHHHHHHh-c-----CHHHHHHHHHHHHHhCCCChHHHHHHH
Q 006562 544 IQLDRNFLEAWGHLTQFYQDL-A-----NSEKALECLQQVLYIDKRFSKAYHLRG 592 (640)
Q Consensus 544 ~~~~~~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~al~~~~~~~~~~~~la 592 (640)
... |.++.+++.+|.+|... | ++++|+.+|+++.+.. ++.+...++
T Consensus 156 ~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g--~~~A~~~l~ 207 (212)
T 3rjv_A 156 SSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG--FDTGCEEFD 207 (212)
T ss_dssp HHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT--CHHHHHHHH
T ss_pred HHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHH
Confidence 988 66678899999999865 3 8999999999998774 344444444
No 116
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.67 E-value=1e-12 Score=140.24 Aligned_cols=207 Identities=11% Similarity=-0.013 Sum_probs=181.4
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006562 432 EAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAI-QDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACV 510 (640)
Q Consensus 432 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~-~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 510 (640)
......|++++...|.++.+|+..+..+...|+.++|. ..|++++...|.+...|..++.+....|+++.|...|++++
T Consensus 326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 326 ARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 44567899999999999999999999999999999997 99999999999999999999999999999999999999999
Q ss_pred HhC-----------CC-----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc-CcccHHHHHHHHHHHHHhc-C
Q 006562 511 KLD-----------KE-----------NKSAYTYLGLALSSIGEYKKAEEAHLKAIQL-DRNFLEAWGHLTQFYQDLA-N 566 (640)
Q Consensus 511 ~~~-----------~~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~la~~~~~~g-~ 566 (640)
... |. ...+|...+.+..+.|+.+.|...|.+|+.. .+.....|...|.+....+ +
T Consensus 406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d 485 (679)
T 4e6h_A 406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKD 485 (679)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSC
T ss_pred HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCC
Confidence 752 43 3457888888888899999999999999987 4445677877787777665 4
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCC---CHHHHHHHHHHHHHcCCcccc
Q 006562 567 SEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS---NIECLYLRASCYHAIGEYREA 638 (640)
Q Consensus 567 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A 638 (640)
++.|..+|+++++..|+++..|...+......|+.+.|...|++++...|+ ...+|..........|+.+.+
T Consensus 486 ~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~ 560 (679)
T 4e6h_A 486 TKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSV 560 (679)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHH
T ss_pred HHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 899999999999999999999999999999999999999999999998883 457788888888888877654
No 117
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.66 E-value=5e-16 Score=149.61 Aligned_cols=196 Identities=16% Similarity=0.091 Sum_probs=103.4
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 006562 413 MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIV 492 (640)
Q Consensus 413 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 492 (640)
.++..+..+|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+..++++++++|++..+++.+|.+
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHH
Q 006562 493 NFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALE 572 (640)
Q Consensus 493 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 572 (640)
+...|++++|+..|++++.++|+++..+......... ..++...........|.++.+...++.++ .|++++|++
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~~ 156 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR---IAKKKRWNSIEERRIHQESELHSYLTRLI--AAERERELE 156 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH---HHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH---HHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHH
Confidence 5555555555555555555555432111111111111 11112222222234444555555555543 566667777
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHhc-CCHHHHHHHHHHhhc
Q 006562 573 CLQQVLYIDKRFSKAYHLRGLLLHGL-GQHKKAIKDLSSGLG 613 (640)
Q Consensus 573 ~~~~al~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~ 613 (640)
.++++++.+|++......++.++... +.+++|...|.++.+
T Consensus 157 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 157 ECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp TTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 77777666666666666666555554 556667777766654
No 118
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.65 E-value=6.3e-16 Score=148.90 Aligned_cols=198 Identities=14% Similarity=0.054 Sum_probs=164.7
Q ss_pred cccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 006562 378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQ 457 (640)
Q Consensus 378 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 457 (640)
|.++..++.+|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++.+|++..+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Q 006562 458 ARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAE 537 (640)
Q Consensus 458 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~ 537 (640)
++...|++++|+..|+++++++|++...+........ ...++...........|.+..+...++.++ .|++++|+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~ 155 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL---RIAKKKRWNSIEERRIHQESELHSYLTRLI--AAEREREL 155 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH---HHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHH
Confidence 9999999999999999999998866322211111111 122233333344456677777777777765 69999999
Q ss_pred HHHHHHHccCcccHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHh
Q 006562 538 EAHLKAIQLDRNFLEAWGHLTQFYQDL-ANSEKALECLQQVLYI 580 (640)
Q Consensus 538 ~~~~~a~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~ 580 (640)
..++++++.+|.+......++.++... +.+++|...|.++.+.
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999999999988888888877776 7789999999988653
No 119
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.65 E-value=8.2e-15 Score=143.34 Aligned_cols=162 Identities=15% Similarity=0.081 Sum_probs=81.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------cHHHHH
Q 006562 386 SRGIAQVNEGKYASAISIFDQILKEDPMY------PEALIGRGTARAFQRELEAAISDFTEAIQSNPS------AGEAWK 453 (640)
Q Consensus 386 ~~a~~~~~~g~~~~A~~~~~~~l~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~ 453 (640)
..|.++...|++++|+..|.++++..+.. ..++..+|.+|...|++++|+.+|++++++.+. ...++.
T Consensus 41 ~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~ 120 (307)
T 2ifu_A 41 KAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALD 120 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 33445555555555555555555443211 234455555555555555555555555544321 123444
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc------HHHHH
Q 006562 454 RRGQARAALGESVEAIQDLSKALEFEPNS------ADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN------KSAYT 521 (640)
Q Consensus 454 ~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~ 521 (640)
.+|.+|.. |++++|+.+|++++.+.|.. ..++..+|.++..+|++++|+.+|++++.+.|.+ ...+.
T Consensus 121 ~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 199 (307)
T 2ifu_A 121 RAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCI 199 (307)
T ss_dssp HHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHH
Confidence 55555555 55555555555555544322 2345555555555555555555555555543322 12444
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHccCcc
Q 006562 522 YLGLALSSIGEYKKAEEAHLKAIQLDRN 549 (640)
Q Consensus 522 ~la~~~~~~g~~~~A~~~~~~a~~~~~~ 549 (640)
.+|.++...|++++|+..|++++ .+|.
T Consensus 200 ~~g~~~~~~g~~~~A~~~~~~al-~~p~ 226 (307)
T 2ifu_A 200 AQVLVQLHRADYVAAQKCVRESY-SIPG 226 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHT-TSTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHh-CCCC
Confidence 45555555555555555555555 5543
No 120
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.65 E-value=3.2e-17 Score=162.25 Aligned_cols=152 Identities=17% Similarity=0.194 Sum_probs=106.2
Q ss_pred ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHH
Q 006562 428 QRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS---------------ADILHERGIV 492 (640)
Q Consensus 428 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~ 492 (640)
++++++|+..+++++...|..+.++..+|.++...|++++|+..|++++.+.|.+ ..++..+|.+
T Consensus 126 L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666666666666666666666666666666666666 4677777777
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHH-H
Q 006562 493 NFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKA-L 571 (640)
Q Consensus 493 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A-~ 571 (640)
+...|++++|+..++++++++|+++.+++.+|.++..+|++++|+..|++++.++|++..++..++.++...|++++| .
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~ 285 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREK 285 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777777777777777777777777777777777777777777777777777777777777776 3
Q ss_pred HHHHHHHH
Q 006562 572 ECLQQVLY 579 (640)
Q Consensus 572 ~~~~~al~ 579 (640)
..|.+++.
T Consensus 286 ~~~~~~~~ 293 (336)
T 1p5q_A 286 KLYANMFE 293 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 45555543
No 121
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.64 E-value=1.3e-17 Score=165.00 Aligned_cols=153 Identities=18% Similarity=0.108 Sum_probs=143.7
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc---------------HHHHHHHHH
Q 006562 461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN---------------KSAYTYLGL 525 (640)
Q Consensus 461 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---------------~~~~~~la~ 525 (640)
.++++++|+..+++++...|....++..+|.+++..|++++|+..|++++.+.|.+ ..++.++|.
T Consensus 125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888888889899999999999999999999999999999999998 699999999
Q ss_pred HHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHH-
Q 006562 526 ALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKA- 604 (640)
Q Consensus 526 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A- 604 (640)
++...|++++|+..|++++..+|+++.+++.+|.++..+|++++|+..|+++++++|++..++..++.++...|++++|
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 284 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE 284 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhc
Q 006562 605 IKDLSSGLG 613 (640)
Q Consensus 605 ~~~~~~al~ 613 (640)
...|++++.
T Consensus 285 ~~~~~~~~~ 293 (336)
T 1p5q_A 285 KKLYANMFE 293 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 556676654
No 122
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.64 E-value=5.9e-16 Score=133.15 Aligned_cols=116 Identities=13% Similarity=0.047 Sum_probs=68.1
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Q 006562 505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF 584 (640)
Q Consensus 505 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 584 (640)
.+++++..+|++...++.+|.++...|++++|+..|++++..+|.++.+|..+|.++...|++++|+..|++++..+|++
T Consensus 9 ~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 88 (148)
T 2vgx_A 9 TIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE 88 (148)
T ss_dssp SHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred hHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 34555555555555555555555555666666666655555555555555556666655666666666666666555655
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHH
Q 006562 585 SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE 620 (640)
Q Consensus 585 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 620 (640)
+.+++.+|.++...|++++|+..|+++++++|+++.
T Consensus 89 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 124 (148)
T 2vgx_A 89 PRFPFHAAECLLQXGELAEAESGLFLAQELIANXPE 124 (148)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGG
T ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCc
Confidence 555666666666666666666666666555555443
No 123
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.63 E-value=1.7e-15 Score=130.30 Aligned_cols=113 Identities=13% Similarity=0.047 Sum_probs=56.7
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 006562 404 FDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA 483 (640)
Q Consensus 404 ~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 483 (640)
|++++..+|+++.+++.+|.++...|++++|+..|++++..+|.++.+|..+|.++...|++++|+..|++++.++|+++
T Consensus 10 ~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 89 (148)
T 2vgx_A 10 IAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEP 89 (148)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT
T ss_pred HHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence 44444444444445555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 006562 484 DILHERGIVNFKFKDFNAAVEDLSACVKLDKEN 516 (640)
Q Consensus 484 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 516 (640)
.+++.+|.++...|++++|+..|++++++.|++
T Consensus 90 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 122 (148)
T 2vgx_A 90 RFPFHAAECLLQXGELAEAESGLFLAQELIANX 122 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 555555555555555555555555555544443
No 124
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.62 E-value=3.6e-14 Score=119.68 Aligned_cols=133 Identities=31% Similarity=0.443 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 006562 383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL 462 (640)
Q Consensus 383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 462 (640)
.++.+|..+...|++++|+..++++++..|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 34555666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 006562 463 GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE 515 (640)
Q Consensus 463 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 515 (640)
|++++|+..+++++...|.+..++..+|.++...|++++|...+++++..+|.
T Consensus 83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 66666666666666666665556666666666666666666666666555553
No 125
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.62 E-value=4.6e-14 Score=119.01 Aligned_cols=132 Identities=33% Similarity=0.450 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 006562 417 ALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKF 496 (640)
Q Consensus 417 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 496 (640)
+++.+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..+++++...|.+..++..+|.++...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 45555666666666666666666666666655555666666666666666666666666666665555555556666666
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCc
Q 006562 497 KDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR 548 (640)
Q Consensus 497 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 548 (640)
|++++|+..+++++...|.++.++..+|.++...|++++|...+.+++..+|
T Consensus 83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 6666666666666555555555555555555555555555555555555544
No 126
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.62 E-value=3.2e-15 Score=157.54 Aligned_cols=206 Identities=16% Similarity=0.150 Sum_probs=134.1
Q ss_pred HHcCCh-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC----------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 006562 392 VNEGKY-ASAISIFDQILKEDPMYPEALIGRGTARAFQRE----------LEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (640)
Q Consensus 392 ~~~g~~-~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 460 (640)
...|++ ++|+..+++++..+|++..+|..++.++...|+ +++++..++++++.+|++..+|...+.++.
T Consensus 39 ~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 39 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 118 (567)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344444 577888888888888888888888888888776 666666666666666666666666666666
Q ss_pred HcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Q 006562 461 ALG--ESVEAIQDLSKALEFEPNSADILHERGIVNFKFK-DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAE 537 (640)
Q Consensus 461 ~~~--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~ 537 (640)
..+ ++++++..+.++++.+|.+..+|...+.+....| .++++++++.++++.+|.+..+|..++.++...+...++
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~- 197 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS- 197 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS-
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc-
Confidence 666 4466666666666666666666666666655555 555555555555555555555555555555443221000
Q ss_pred HHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHH------------HH
Q 006562 538 EAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKK------------AI 605 (640)
Q Consensus 538 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~------------A~ 605 (640)
.+.. -...+.++++++++.+++..+|++..+|+.++.++...+++++ |+
T Consensus 198 ---------~~~~----------~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~ 258 (567)
T 1dce_A 198 ---------GPQG----------RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLS 258 (567)
T ss_dssp ---------SSCC----------SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEE
T ss_pred ---------cccc----------cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEE
Confidence 0000 0002557888899999999999999999999988888887666 55
Q ss_pred HHHHHhhccCCC
Q 006562 606 KDLSSGLGIDPS 617 (640)
Q Consensus 606 ~~~~~al~~~p~ 617 (640)
..|.+++.++|.
T Consensus 259 ~~f~~~i~~~~~ 270 (567)
T 1dce_A 259 VCFSRPLTVGSR 270 (567)
T ss_dssp EEEEEEECTTBT
T ss_pred EEeccceecccc
Confidence 567777776665
No 127
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.61 E-value=9.3e-15 Score=121.95 Aligned_cols=99 Identities=16% Similarity=0.152 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHccc-CchhHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCch-------HHHHH
Q 006562 37 ITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLL-------QAYIL 108 (640)
Q Consensus 37 ~~~~~~~~~~~~~~~y~~Ai~~y~~ai~~~-~~~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~-------~a~~~ 108 (640)
...+-.+..+|+.|+|++|+.+|++||+++ .++.+|+++|.||.++|+|++|+..++++|+++|++. .+|++
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 444445667899999999999999999999 4556799999999999999999999999999998764 58999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhccC
Q 006562 109 KGCAFSALGRKEEALSVWEKGYEHALH 135 (640)
Q Consensus 109 ~g~~y~~~g~~~~A~~~~~~al~~~~~ 135 (640)
+|.+|..+|++++|+..|+++++..|+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 999999999999999999999988774
No 128
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.60 E-value=1.9e-14 Score=126.13 Aligned_cols=113 Identities=15% Similarity=0.089 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHcc------------------c-CchhHHHhHHHHHHhhhcHHHHHHHHHHHHH
Q 006562 37 ITARIELAKLCSLRNWSKAIRILDSLLAQ------------------S-YEIQDICNRAFCYSQLELHKHVIRDCDKALQ 97 (640)
Q Consensus 37 ~~~~~~~~~~~~~~~y~~Ai~~y~~ai~~------------------~-~~~~~~~~~A~~~~~~g~~~~Ai~~~~~al~ 97 (640)
..-+..+..+|..|+|++|+.+|+++|.. + .+..+++++|.||+++|+|++|+..|+++|+
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 33445566789999999999999999998 4 3335689999999999999999999999999
Q ss_pred cCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCh-HHHHHHHhHHHH
Q 006562 98 LDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQS-ADLKQFLELEEL 149 (640)
Q Consensus 98 ~~P~~~~a~~~~g~~y~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~l~~~ 149 (640)
++|+++++|+++|.+|..+|++++|+..|++++++.|+.+ .....+..+...
T Consensus 92 ~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~ 144 (162)
T 3rkv_A 92 REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTER 144 (162)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999987 334444444433
No 129
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.60 E-value=4e-15 Score=127.17 Aligned_cols=112 Identities=15% Similarity=0.153 Sum_probs=51.5
Q ss_pred hhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHH
Q 006562 372 RISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEA 451 (640)
Q Consensus 372 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 451 (640)
.+...+|.++..++.+|..++..|++++|+..|++++..+|+++.+|+.+|.++...|++++|+..|++++..+|+++.+
T Consensus 9 ~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 88 (142)
T 2xcb_A 9 MLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRF 88 (142)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHH
Confidence 33344444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 006562 452 WKRRGQARAALGESVEAIQDLSKALEFEPNSA 483 (640)
Q Consensus 452 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 483 (640)
++.+|.++...|++++|+..|++++.+.|.++
T Consensus 89 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 120 (142)
T 2xcb_A 89 PFHAAECHLQLGDLDGAESGFYSARALAAAQP 120 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCG
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 44444444444444444444444444444433
No 130
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.58 E-value=2.1e-14 Score=122.71 Aligned_cols=130 Identities=13% Similarity=0.080 Sum_probs=117.4
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 006562 402 SIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPN 481 (640)
Q Consensus 402 ~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 481 (640)
..|++++..+|++...++.+|.++...|++++|+..|++++..+|.++.+|..+|.++...|++++|+..|++++.++|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 46778888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 006562 482 SADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIG 531 (640)
Q Consensus 482 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g 531 (640)
++.+++.+|.++...|++++|+..|++++..+|+++........+....+
T Consensus 85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~ 134 (142)
T 2xcb_A 85 EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLE 134 (142)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988766665555554443
No 131
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.58 E-value=1.7e-13 Score=129.69 Aligned_cols=224 Identities=8% Similarity=-0.059 Sum_probs=174.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 006562 382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAA 461 (640)
Q Consensus 382 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 461 (640)
...+.+.+.++..|++.... ..+....+...++..+. ++ |+..+++.+...+....++..+|.++..
T Consensus 46 ~~~~~~~Rs~iAlg~~~~~~--------~~~~~~~a~~~la~~~~--~~---a~~~l~~l~~~~~~~~~~~~~la~i~~~ 112 (310)
T 3mv2_B 46 TLLFYKAKTLLALGQYQSQD--------PTSKLGKVLDLYVQFLD--TK---NIEELENLLKDKQNSPYELYLLATAQAI 112 (310)
T ss_dssp HHHHHHHHHHHHTTCCCCCC--------SSSTTHHHHHHHHHHHT--TT---CCHHHHHTTTTSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCccCC--------CCCHHHHHHHHHHHHhc--cc---HHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 45566677788888877421 12222234444444432 32 7888988887765666777899999999
Q ss_pred cCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcC--
Q 006562 462 LGESVEAIQDLSKALEFEP--NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE------NKSAYTYLGLALSSIG-- 531 (640)
Q Consensus 462 ~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~g-- 531 (640)
.|++++|+.++.+.+..+| .+.+++...+.++..+|+.+.|.+.++++.+.+|+ .......-+++....|
T Consensus 113 ~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~ 192 (310)
T 3mv2_B 113 LGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKE 192 (310)
T ss_dssp HTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred cCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCc
Confidence 9999999999999999887 77889999999999999999999999999999883 2333334455576667
Q ss_pred CHHHHHHHHHHHHccCccc--HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----------CCCChHHHHHHHHHHHhcC
Q 006562 532 EYKKAEEAHLKAIQLDRNF--LEAWGHLTQFYQDLANSEKALECLQQVLYI----------DKRFSKAYHLRGLLLHGLG 599 (640)
Q Consensus 532 ~~~~A~~~~~~a~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~----------~~~~~~~~~~la~~~~~~g 599 (640)
++.+|...|+++....|+. +..+++ ++..+|++++|...++.+++. +|+++.++.+++.+...+|
T Consensus 193 ~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lg 269 (310)
T 3mv2_B 193 TATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQG 269 (310)
T ss_dssp TTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhC
Confidence 8999999999998888862 333333 899999999999999987776 4889999999998888899
Q ss_pred CHHHHHHHHHHhhccCCCCHHHHH
Q 006562 600 QHKKAIKDLSSGLGIDPSNIECLY 623 (640)
Q Consensus 600 ~~~~A~~~~~~al~~~p~~~~~~~ 623 (640)
+ +|.++++++.+.+|+++.+.-
T Consensus 270 k--~a~~l~~qL~~~~P~hp~i~d 291 (310)
T 3mv2_B 270 L--DTEDLTNQLVKLDHEHAFIKH 291 (310)
T ss_dssp C--TTHHHHHHHHHTTCCCHHHHH
T ss_pred h--HHHHHHHHHHHhCCCChHHHH
Confidence 7 899999999999999986543
No 132
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.58 E-value=5.8e-14 Score=117.14 Aligned_cols=114 Identities=19% Similarity=0.251 Sum_probs=78.3
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 006562 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR 459 (640)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 459 (640)
.+..+..+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|+++.+++.+|.++
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 35566666777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHH
Q 006562 460 AALGESVEAIQDLSKALEFE------PNSADILHERGIVN 493 (640)
Q Consensus 460 ~~~~~~~~A~~~~~~al~~~------p~~~~~~~~la~~~ 493 (640)
...|++++|+..|+++++++ |.+..++..++.+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 77777777777777777666 66666655555544
No 133
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.57 E-value=1.2e-13 Score=134.01 Aligned_cols=166 Identities=11% Similarity=0.038 Sum_probs=97.1
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc-----
Q 006562 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP------EALIGRGTARAFQRELEAAISDFTEAIQSNPSA----- 448 (640)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----- 448 (640)
....+...+..++..|+|++|+..+.++++..+... ..++.+|.++...|++++|+.++++++...+..
T Consensus 74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 153 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ 153 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHH
Confidence 345556677777777777777777777777666543 234456666666666667777666666554332
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-----
Q 006562 449 -GEAWKRRGQARAALGESVEAIQDLSKAL---EFEPNSA----DILHERGIVNFKFKDFNAAVEDLSACVKLDKE----- 515 (640)
Q Consensus 449 -~~~~~~la~~~~~~~~~~~A~~~~~~al---~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~----- 515 (640)
..++..+|.+|...|++++|+.+|++++ +..|.+. .+++.+|.+|...|++++|+.++++++...+.
T Consensus 154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~ 233 (293)
T 2qfc_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHH
Confidence 3455666666666666666666666666 3334322 35555566666666666666666665554321
Q ss_pred -cHHHHHHHHHHHHHcCCHHHH-HHHHHHHHc
Q 006562 516 -NKSAYTYLGLALSSIGEYKKA-EEAHLKAIQ 545 (640)
Q Consensus 516 -~~~~~~~la~~~~~~g~~~~A-~~~~~~a~~ 545 (640)
...+++.+|.++..+|++++| ..++++++.
T Consensus 234 ~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp SHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 134455555555555555555 444555543
No 134
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.57 E-value=4.1e-14 Score=118.07 Aligned_cols=115 Identities=14% Similarity=0.094 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 006562 517 KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLH 596 (640)
Q Consensus 517 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 596 (640)
...+..+|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+..++++++.+|+++.+++.+|.++.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 44555666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred hcCCHHHHHHHHHHhhccC------CCCHHHHHHHHHHHHH
Q 006562 597 GLGQHKKAIKDLSSGLGID------PSNIECLYLRASCYHA 631 (640)
Q Consensus 597 ~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~ 631 (640)
.+|++++|+..|+++++++ |++..++..++.+...
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 6666666666666666666 6666666666555543
No 135
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.57 E-value=8.2e-14 Score=146.78 Aligned_cols=172 Identities=14% Similarity=0.175 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC--CH
Q 006562 466 VEAIQDLSKALEFEPNSADILHERGIVNFKFKD----------FNAAVEDLSACVKLDKENKSAYTYLGLALSSIG--EY 533 (640)
Q Consensus 466 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~----------~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g--~~ 533 (640)
++|+..+.+++..+|++..+|...+.++...|+ +++++..+++++..+|++..+|...+.++...+ ++
T Consensus 46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~ 125 (567)
T 1dce_A 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW 125 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccH
Confidence 344555555555555555555555555555554 555555555555555555555555555555555 44
Q ss_pred HHHHHHHHHHHccCcccHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhc--------------
Q 006562 534 KKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA-NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGL-------------- 598 (640)
Q Consensus 534 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~-------------- 598 (640)
++++..+.++++.+|.+..+|.+.+.+....| .++++++++.++++.+|.+..+|..++.++...
T Consensus 126 ~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~ 205 (567)
T 1dce_A 126 ARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPE 205 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCH
T ss_pred HHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccH
Confidence 55555555555555555555555555555555 555555555555555555555555555555543
Q ss_pred CCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCCccc
Q 006562 599 GQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYRE 637 (640)
Q Consensus 599 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 637 (640)
+.+++|++++.+++..+|++..+|+.++.++...+++++
T Consensus 206 ~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 206 NVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred HHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 568999999999999999999999999999999888655
No 136
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.56 E-value=3.3e-13 Score=131.05 Aligned_cols=167 Identities=9% Similarity=0.001 Sum_probs=116.4
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----
Q 006562 414 YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG------EAWKRRGQARAALGESVEAIQDLSKALEFEPNS----- 482 (640)
Q Consensus 414 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----- 482 (640)
....+...+..+...|++++|+..+.++++..+... ..+..+|.++...|++++|+..+++++...+..
T Consensus 74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 153 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ 153 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHH
Confidence 344556677788888888888888888888776543 234557777777778888888888887665433
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHH---HhCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHccCcc-----
Q 006562 483 -ADILHERGIVNFKFKDFNAAVEDLSACV---KLDKENK----SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN----- 549 (640)
Q Consensus 483 -~~~~~~la~~~~~~~~~~~A~~~~~~al---~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~----- 549 (640)
..++..+|.+|...|++++|+.++++++ ...|++. .+++++|.+|...|++++|+.++++++...+.
T Consensus 154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~ 233 (293)
T 2qfc_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHH
Confidence 4467777777777777777777777777 3344432 46677777777777777777777777765432
Q ss_pred -cHHHHHHHHHHHHHhcCHHHH-HHHHHHHHHh
Q 006562 550 -FLEAWGHLTQFYQDLANSEKA-LECLQQVLYI 580 (640)
Q Consensus 550 -~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~ 580 (640)
...++..+|.+|..+|++++| ..++++++.+
T Consensus 234 ~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp SHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 256677777777777777777 6667776644
No 137
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.56 E-value=1.7e-13 Score=126.18 Aligned_cols=150 Identities=17% Similarity=0.121 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 006562 449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALS 528 (640)
Q Consensus 449 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 528 (640)
...++.+|.++...|++++|+..|++++ .| ++.++..+|.++...|++++|+..+++++..+|.++.+++.+|.++.
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 3457788999999999999999998885 33 67889999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHccCcccH----------------HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 006562 529 SIGEYKKAEEAHLKAIQLDRNFL----------------EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRG 592 (640)
Q Consensus 529 ~~g~~~~A~~~~~~a~~~~~~~~----------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la 592 (640)
..|++++|+..|++++...|.+. .++..+|.++...|++++|+..|++++...|+..
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~------- 155 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR------- 155 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG-------
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc-------
Confidence 99999999999999998766544 8888999999999999999999999998888753
Q ss_pred HHHHhcCCHHHHHHHHHHhhc
Q 006562 593 LLLHGLGQHKKAIKDLSSGLG 613 (640)
Q Consensus 593 ~~~~~~g~~~~A~~~~~~al~ 613 (640)
.+..+.|+..+.+...
T Consensus 156 -----~~~~~~a~~~~~~~~~ 171 (213)
T 1hh8_A 156 -----HSKIDKAMECVWKQKL 171 (213)
T ss_dssp -----GGHHHHHHHHHHTTCC
T ss_pred -----cchHHHHHHHHHhccc
Confidence 2445556666655444
No 138
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.56 E-value=1.7e-13 Score=126.11 Aligned_cols=133 Identities=19% Similarity=0.249 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 006562 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (640)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 460 (640)
...++.+|..++..|++++|+..|++++ +| ++.+++.+|.++...|++++|+..|++++..+|.++.++..+|.++.
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 4456788999999999999999999885 33 68899999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 006562 461 ALGESVEAIQDLSKALEFEPNSA----------------DILHERGIVNFKFKDFNAAVEDLSACVKLDKEN 516 (640)
Q Consensus 461 ~~~~~~~A~~~~~~al~~~p~~~----------------~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 516 (640)
..|++++|+..|+++++..|.+. .+++.+|.++...|++++|+..+++++...|++
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 99999999999999999888766 788888888888888888888888888888876
No 139
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.55 E-value=1e-14 Score=132.59 Aligned_cols=150 Identities=23% Similarity=0.177 Sum_probs=75.0
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------------HH
Q 006562 422 GTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA----------------DI 485 (640)
Q Consensus 422 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~----------------~~ 485 (640)
+.+....|+++++.+.+.......+.....+..+|..++..|++++|+..|.+++...|.++ .+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISC 90 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHH
Confidence 33344444455544444444433344444555555555555555555555555555555444 45
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhc
Q 006562 486 LHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565 (640)
Q Consensus 486 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g 565 (640)
+..+|.++...|++++|+.++++++..+|.++.+++.+|.++...|++++|+..|++++..+|.+..++..++.++...+
T Consensus 91 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 170 (198)
T 2fbn_A 91 NLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLK 170 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CHHHHH
Q 006562 566 NSEKAL 571 (640)
Q Consensus 566 ~~~~A~ 571 (640)
+..++.
T Consensus 171 ~~~~~~ 176 (198)
T 2fbn_A 171 EARKKD 176 (198)
T ss_dssp HHHC--
T ss_pred HHHHHH
Confidence 444443
No 140
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.55 E-value=7.9e-15 Score=133.41 Aligned_cols=155 Identities=18% Similarity=0.095 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcH-------------
Q 006562 451 AWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK------------- 517 (640)
Q Consensus 451 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~------------- 517 (640)
.....+......|.++++.+.+.......+.....+..+|..++..|++++|+..|.+++...|.++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 85 (198)
T 2fbn_A 6 HHHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKN 85 (198)
T ss_dssp ----------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHH
T ss_pred cccchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHH
Confidence 3344556666677777777777766665556667788888888888888888888888888887776
Q ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 006562 518 ---SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLL 594 (640)
Q Consensus 518 ---~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~ 594 (640)
.++..+|.++...|++++|+..+++++..+|.++.+++.+|.++...|++++|+..|++++..+|+++.++..++.+
T Consensus 86 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 165 (198)
T 2fbn_A 86 IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELC 165 (198)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHH
Confidence 77778888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHhcCCHHHHH
Q 006562 595 LHGLGQHKKAI 605 (640)
Q Consensus 595 ~~~~g~~~~A~ 605 (640)
+...++..++.
T Consensus 166 ~~~~~~~~~~~ 176 (198)
T 2fbn_A 166 VNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHHHH
Confidence 77777666655
No 141
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.55 E-value=2.9e-13 Score=118.91 Aligned_cols=132 Identities=19% Similarity=0.184 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 006562 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (640)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 460 (640)
+..++.+|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..+.+++..+|.++.++..+|.++.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 56677778888888888888888888888888888888888888888888888888888888888877777888888888
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHHHh
Q 006562 461 ALGESVEAIQDLSKALEFEPNSADILHERG--IVNFKFKDFNAAVEDLSACVKL 512 (640)
Q Consensus 461 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la--~~~~~~~~~~~A~~~~~~al~~ 512 (640)
..|++++|+.++++++...|.+..++..++ ..+...|++++|+..+.++...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 888888888888888888777777664433 3366677777777777765443
No 142
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.55 E-value=5e-14 Score=125.49 Aligned_cols=130 Identities=12% Similarity=0.163 Sum_probs=108.3
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHH-HHHcCCH--HH
Q 006562 391 QVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQA-RAALGES--VE 467 (640)
Q Consensus 391 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~~~~--~~ 467 (640)
+...|++++|+..+++++..+|.++.++..+|.++...|++++|+.+|+++++.+|.++.++..+|.+ +...|++ ++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 34578888899999999998998889999999999999999999999999998888888888888888 7788888 88
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHH
Q 006562 468 AIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAY 520 (640)
Q Consensus 468 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 520 (640)
|+..+++++..+|.+..++..+|.++...|++++|+..+++++..+|.+....
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 88888888888888888888888888888888888888888888888775433
No 143
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.55 E-value=2.7e-14 Score=127.26 Aligned_cols=123 Identities=19% Similarity=0.171 Sum_probs=59.9
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH-HHHcCCH--HHHHH
Q 006562 462 LGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA-LSSIGEY--KKAEE 538 (640)
Q Consensus 462 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~-~~~~g~~--~~A~~ 538 (640)
.|++++|+..+++++..+|.++.++..+|.++...|++++|+.+|++++..+|+++.++..+|.+ +...|++ ++|+.
T Consensus 23 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~ 102 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRA 102 (177)
T ss_dssp ----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 34444555555555555555555555555555555555555555555555555555555555554 4444444 45555
Q ss_pred HHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Q 006562 539 AHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF 584 (640)
Q Consensus 539 ~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 584 (640)
.+++++..+|.++.++..+|.++...|++++|+..|++++...|++
T Consensus 103 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 103 MIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 5555555555444445555555555555555555555555444444
No 144
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.55 E-value=1.6e-13 Score=133.30 Aligned_cols=163 Identities=12% Similarity=0.051 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc------HH
Q 006562 383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPE------ALIGRGTARAFQRELEAAISDFTEAIQSNPSA------GE 450 (640)
Q Consensus 383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~ 450 (640)
.+...+..++..|++++|+..+++++...+..+. .+..+|.++...|++++|+.++++++...+.. ..
T Consensus 77 ~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 3u3w_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 3444566777777777777777777776665543 22235666666666677777777666643322 22
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc------H
Q 006562 451 AWKRRGQARAALGESVEAIQDLSKALEFE---PNS----ADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN------K 517 (640)
Q Consensus 451 ~~~~la~~~~~~~~~~~A~~~~~~al~~~---p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~------~ 517 (640)
++..+|.+|...|++++|+.+|+++++.. |.+ ..+++.+|.+|...|++++|+.++++++.+.+.. .
T Consensus 157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~ 236 (293)
T 3u3w_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence 45566666666666666666666665321 111 2244455555555555555555555554443211 3
Q ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHHHHc
Q 006562 518 SAYTYLGLALSSIG-EYKKAEEAHLKAIQ 545 (640)
Q Consensus 518 ~~~~~la~~~~~~g-~~~~A~~~~~~a~~ 545 (640)
.+++.+|.++..+| .+++|+.+|++++.
T Consensus 237 ~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 44444444444444 23444444444443
No 145
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.54 E-value=1.1e-13 Score=115.99 Aligned_cols=123 Identities=22% Similarity=0.222 Sum_probs=97.5
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 006562 514 KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGL 593 (640)
Q Consensus 514 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~ 593 (640)
|.+...+..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence 44566777777778788888888888888877777777778888888888888888888888888888877888888888
Q ss_pred HHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCCcc
Q 006562 594 LLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYR 636 (640)
Q Consensus 594 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 636 (640)
++...|++++|+.+|+++++.+|++..++..++.++..+|+++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 8888888888888888888888888888888888888777753
No 146
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.54 E-value=3.5e-13 Score=118.36 Aligned_cols=128 Identities=21% Similarity=0.225 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 006562 416 EALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFK 495 (640)
Q Consensus 416 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 495 (640)
..+..+|.++...|++++|+..|++++...|.++.++..+|.++...|++++|+..+++++..+|.++.++..+|.++..
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHH--HHHHHcCCHHHHHHHHHHH
Q 006562 496 FKDFNAAVEDLSACVKLDKENKSAYTYLG--LALSSIGEYKKAEEAHLKA 543 (640)
Q Consensus 496 ~~~~~~A~~~~~~al~~~~~~~~~~~~la--~~~~~~g~~~~A~~~~~~a 543 (640)
.|++++|+.++++++..+|.+..++..++ ..+...|++++|+..+.++
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 55555555555555555555554443222 2244445555555554443
No 147
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.53 E-value=2.4e-13 Score=113.89 Aligned_cols=123 Identities=22% Similarity=0.342 Sum_probs=91.0
Q ss_pred CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 006562 377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG 456 (640)
Q Consensus 377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 456 (640)
.|.++..++.+|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..+.+++...|.++.++..+|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 87 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHH
Confidence 34456677777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Q 006562 457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDF 499 (640)
Q Consensus 457 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 499 (640)
.++...|++++|+..+++++...|.+..++..++.++...|++
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 7777777777777777777777777777777777777766654
No 148
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.53 E-value=2.2e-13 Score=114.55 Aligned_cols=124 Identities=17% Similarity=0.238 Sum_probs=100.8
Q ss_pred ccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHH
Q 006562 375 KSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKR 454 (640)
Q Consensus 375 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 454 (640)
...|..+..++.+|..++..|++++|+..|+++++.+|.++.++..+|.++...|++++|+.+++++++.+|.++.++..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 89 (133)
T 2lni_A 10 HMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTR 89 (133)
T ss_dssp CSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHH
Confidence 34566677888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Q 006562 455 RGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKD 498 (640)
Q Consensus 455 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 498 (640)
+|.++...|++++|+..+++++..+|.+..++..++.++...|+
T Consensus 90 la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 88888888888888888888888888777788888877776653
No 149
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.52 E-value=2e-13 Score=119.79 Aligned_cols=116 Identities=28% Similarity=0.330 Sum_probs=90.3
Q ss_pred CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 006562 377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG 456 (640)
Q Consensus 377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 456 (640)
.+.++..++.+|..++..|+|++|+..|+++++.+|.++.+++.+|.++...|++++|+..|+++++.+|+++.+++.+|
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 44556777788888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 006562 457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIV 492 (640)
Q Consensus 457 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 492 (640)
.++...|++++|+..|+++++++|++...+...+..
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 888888888888888888888877776655554443
No 150
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.52 E-value=3.4e-13 Score=113.40 Aligned_cols=118 Identities=23% Similarity=0.329 Sum_probs=60.4
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 006562 448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLAL 527 (640)
Q Consensus 448 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 527 (640)
....+..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++..+|.++.++..+|.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 34445555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhc
Q 006562 528 SSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565 (640)
Q Consensus 528 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g 565 (640)
...|++++|+..|++++..+|.+..++..++.++..+|
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 55555555555555555555555455555555444443
No 151
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.51 E-value=5.7e-13 Score=129.31 Aligned_cols=159 Identities=11% Similarity=0.006 Sum_probs=98.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc------HHHHHHH
Q 006562 456 GQARAALGESVEAIQDLSKALEFEPNSAD------ILHERGIVNFKFKDFNAAVEDLSACVKLDKEN------KSAYTYL 523 (640)
Q Consensus 456 a~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~l 523 (640)
+..+...|++++|+..+++++...+..+. .+..+|.++...|++++|+.++++++...+.. ..++..+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 34444555555555555555554443332 22235555555666666666666666543221 2356666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHcc-------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------hHHHHH
Q 006562 524 GLALSSIGEYKKAEEAHLKAIQL-------DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF------SKAYHL 590 (640)
Q Consensus 524 a~~~~~~g~~~~A~~~~~~a~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~ 590 (640)
|.+|...|++++|+.+|++++.. .+....++.++|.+|..+|++++|+.+++++++..+.. +.++..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 77777777777777777776632 22335567778888888888888888888777665422 567788
Q ss_pred HHHHHHhcCC-HHHHHHHHHHhhcc
Q 006562 591 RGLLLHGLGQ-HKKAIKDLSSGLGI 614 (640)
Q Consensus 591 la~~~~~~g~-~~~A~~~~~~al~~ 614 (640)
+|.++..+|+ +++|+.+|++++.+
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 8888888884 58888888887754
No 152
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.50 E-value=2.8e-13 Score=118.86 Aligned_cols=112 Identities=22% Similarity=0.302 Sum_probs=70.6
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006562 414 YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVN 493 (640)
Q Consensus 414 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 493 (640)
++..++.+|.+++..|++++|+..|+++++.+|.++.++..+|.++...|++++|+..|++++.++|.+..+++.+|.++
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 35556666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 006562 494 FKFKDFNAAVEDLSACVKLDKENKSAYTYLGL 525 (640)
Q Consensus 494 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~ 525 (640)
...|++++|+.+|+++++++|++...++..+.
T Consensus 90 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 66666666666666666666666554444443
No 153
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.49 E-value=1.2e-12 Score=123.94 Aligned_cols=185 Identities=10% Similarity=-0.013 Sum_probs=141.7
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006562 400 AISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP--SAGEAWKRRGQARAALGESVEAIQDLSKALE 477 (640)
Q Consensus 400 A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 477 (640)
|+..|++.+...+....++..+|.++...|++++|+..+.+.+..+| .+.+++..++.++...|+.+.|.+.++++.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 67788877776656677777888888888888888888888888776 7788888888888888888888888888888
Q ss_pred hCCC------CHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc-
Q 006562 478 FEPN------SADILHERGIVNFKFK--DFNAAVEDLSACVKLDKE--NKSAYTYLGLALSSIGEYKKAEEAHLKAIQL- 546 (640)
Q Consensus 478 ~~p~------~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~- 546 (640)
.+|+ .......-+++.+..| ++.+|...|+++....|+ .+..+++ ++..+|++++|...++.++..
T Consensus 165 ~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHH
T ss_pred cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhc
Confidence 8872 2223333344466556 888888888888777776 2333333 788888888888888877765
Q ss_pred ---------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHH
Q 006562 547 ---------DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYH 589 (640)
Q Consensus 547 ---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 589 (640)
+|+++.++.+++.+...+|+ +|.++++++.+..|+++.+.-
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d 291 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH 291 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH
Confidence 47788888888888888887 788888888888888877643
No 154
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.49 E-value=1.3e-12 Score=108.35 Aligned_cols=117 Identities=29% Similarity=0.353 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 006562 517 KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLH 596 (640)
Q Consensus 517 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 596 (640)
...++.+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+.++++++...|.++.++..+|.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 45566666666666666666666666666666666666666666666666666666666666666666666666777777
Q ss_pred hcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHcC
Q 006562 597 GLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIG 633 (640)
Q Consensus 597 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 633 (640)
..|++++|+.++++++..+|+++.++..++.++...|
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 7777777777777777667766666666666665544
No 155
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.48 E-value=3.7e-13 Score=112.17 Aligned_cols=103 Identities=17% Similarity=0.152 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-------hHHHHHH
Q 006562 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF-------SKAYHLR 591 (640)
Q Consensus 519 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~~l 591 (640)
++..+|..++..|++++|+..|++++.++|+++.+|.++|.+|..+|++++|+..++++++++|++ ..++..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 444455555555555555555555555555555555555555555555555555555555554432 1345556
Q ss_pred HHHHHhcCCHHHHHHHHHHhhccCCCCHHHH
Q 006562 592 GLLLHGLGQHKKAIKDLSSGLGIDPSNIECL 622 (640)
Q Consensus 592 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 622 (640)
|.++..+|++++|+.+|++++...|+ ++..
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~~~~~-~~~~ 119 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLSEFRD-PELV 119 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSCC-HHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCcC-HHHH
Confidence 66666666666666666666666554 4433
No 156
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.48 E-value=2.7e-12 Score=106.34 Aligned_cols=110 Identities=33% Similarity=0.450 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 006562 417 ALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKF 496 (640)
Q Consensus 417 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 496 (640)
+++.+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++...|.++.++..+|.++...
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 90 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQ 90 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh
Confidence 33333333333344444444444443333333333333343333334444444444443333333333333333333333
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 006562 497 KDFNAAVEDLSACVKLDKENKSAYTYLGLA 526 (640)
Q Consensus 497 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~ 526 (640)
|++++|+..+++++..+|.++.++..++.+
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 120 (125)
T 1na0_A 91 GDYDEAIEYYQKALELDPNNAEAKQNLGNA 120 (125)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 444444444444333333333333333333
No 157
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.47 E-value=4.8e-13 Score=113.32 Aligned_cols=104 Identities=20% Similarity=0.196 Sum_probs=51.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHH
Q 006562 480 PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ 559 (640)
Q Consensus 480 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~ 559 (640)
|.++..+..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|.++.++..+|.
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 34444445555555555555555555555555555554455555555555555555555555555444444444445555
Q ss_pred HHHHhcCHHHHHHHHHHHHHhCCC
Q 006562 560 FYQDLANSEKALECLQQVLYIDKR 583 (640)
Q Consensus 560 ~~~~~g~~~~A~~~~~~al~~~~~ 583 (640)
++...|++++|+..|++++...|+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 554455555555555544444443
No 158
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.47 E-value=6.3e-14 Score=144.77 Aligned_cols=159 Identities=13% Similarity=0.086 Sum_probs=91.7
Q ss_pred cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006562 394 EGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLS 473 (640)
Q Consensus 394 ~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 473 (640)
.+++++|+..|+.++...|..+..+..+|.+++..|+|++|+..|+++++..|.+.... .+.
T Consensus 247 l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~------------~~~------ 308 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLS------------EKE------ 308 (457)
T ss_dssp EEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCC------------HHH------
T ss_pred hhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCC------------hHH------
Confidence 34555666666666666666666666666666666666666666666666666552100 000
Q ss_pred HHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHH
Q 006562 474 KALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA 553 (640)
Q Consensus 474 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 553 (640)
..+..+....++..+|.++..+|++++|+..+++++.++|++..+++.+|.++..+|++++|+..|++++.++|++..+
T Consensus 309 -~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a 387 (457)
T 1kt0_A 309 -SKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAA 387 (457)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Confidence 0000111145566666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHhcCHHHHH
Q 006562 554 WGHLTQFYQDLANSEKAL 571 (640)
Q Consensus 554 ~~~la~~~~~~g~~~~A~ 571 (640)
+..++.++...+++++|.
T Consensus 388 ~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 388 RLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666666666666554
No 159
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.47 E-value=1.1e-12 Score=111.19 Aligned_cols=105 Identities=20% Similarity=0.216 Sum_probs=70.5
Q ss_pred CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 006562 377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG 456 (640)
Q Consensus 377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 456 (640)
.+.++..++.+|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|.++.++..+|
T Consensus 5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 44556666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC
Q 006562 457 QARAALGESVEAIQDLSKALEFEPN 481 (640)
Q Consensus 457 ~~~~~~~~~~~A~~~~~~al~~~p~ 481 (640)
.++...|++++|+..|++++...|+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChh
Confidence 6666666666666666666666655
No 160
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.47 E-value=5.3e-13 Score=116.81 Aligned_cols=90 Identities=19% Similarity=0.140 Sum_probs=66.1
Q ss_pred CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCH-HHHHHH
Q 006562 547 DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI-ECLYLR 625 (640)
Q Consensus 547 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l 625 (640)
+|....++.++|.++..+|++++|+..+++++.++|.++.+++.+|.++..+|++++|+..|++++.++|++. .+...+
T Consensus 59 ~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l 138 (162)
T 3rkv_A 59 DRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREM 138 (162)
T ss_dssp HHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 5566677777777777777777777777777777777777777777777777777777777777777777777 556666
Q ss_pred HHHHHHcCCcc
Q 006562 626 ASCYHAIGEYR 636 (640)
Q Consensus 626 a~~~~~~g~~~ 636 (640)
+.+....++..
T Consensus 139 ~~~~~~~~~~~ 149 (162)
T 3rkv_A 139 KIVTERRAEKK 149 (162)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 66665554443
No 161
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.47 E-value=5e-14 Score=145.50 Aligned_cols=133 Identities=21% Similarity=0.217 Sum_probs=83.0
Q ss_pred hhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHccCHHHHH
Q 006562 371 TRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---------------PEALIGRGTARAFQRELEAAI 435 (640)
Q Consensus 371 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~---------------~~~~~~la~~~~~~g~~~~A~ 435 (640)
.......|..+..+..+|..++..|+|++|+..|+++++.+|.+ ..+++++|.++..+|++++|+
T Consensus 258 ~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~ 337 (457)
T 1kt0_A 258 EMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAV 337 (457)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 33344566778899999999999999999999999999999987 345555555555555555555
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006562 436 SDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAV 503 (640)
Q Consensus 436 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~ 503 (640)
..|+++++.+|++..+++.+|.+|..+|++++|+..|+++++++|++..++..++.++...++++++.
T Consensus 338 ~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 338 ECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555444443
No 162
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.46 E-value=6e-13 Score=109.74 Aligned_cols=101 Identities=17% Similarity=0.161 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 006562 383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL 462 (640)
Q Consensus 383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 462 (640)
.++.+|..++..|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|+++++.+|+++.++..+|.++...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 46778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCH
Q 006562 463 GESVEAIQDLSKALEFEPNSA 483 (640)
Q Consensus 463 ~~~~~A~~~~~~al~~~p~~~ 483 (640)
|++++|+..++++++.+|.+.
T Consensus 99 g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHC------
T ss_pred CCHHHHHHHHHHHHHhCcCCC
Confidence 999999999999998888764
No 163
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.46 E-value=2.4e-12 Score=105.43 Aligned_cols=113 Identities=18% Similarity=0.153 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 006562 517 KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLH 596 (640)
Q Consensus 517 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 596 (640)
...++.+|.++...|++++|+..|++++...|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 45666677777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred hcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHH
Q 006562 597 GLGQHKKAIKDLSSGLGIDPSNIECLYLRASCY 629 (640)
Q Consensus 597 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 629 (640)
..|++++|+..++++++.+|+++.++..++.+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 777777777777777777777777777766654
No 164
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.45 E-value=3.8e-12 Score=104.20 Aligned_cols=113 Identities=19% Similarity=0.256 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 006562 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (640)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 460 (640)
+..++.+|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 45566667777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006562 461 ALGESVEAIQDLSKALEFEPNSADILHERGIVN 493 (640)
Q Consensus 461 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 493 (640)
..|++++|+..++++++..|.++.++..++.+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 777777777777777777776666666665543
No 165
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.45 E-value=6e-13 Score=109.75 Aligned_cols=99 Identities=16% Similarity=0.092 Sum_probs=52.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcC
Q 006562 520 YTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG 599 (640)
Q Consensus 520 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g 599 (640)
++.+|..+...|++++|+..|++++..+|+++.+|+.+|.++...|++++|+..|+++++++|+++.++..+|.++...|
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 34455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CHHHHHHHHHHhhccCCCC
Q 006562 600 QHKKAIKDLSSGLGIDPSN 618 (640)
Q Consensus 600 ~~~~A~~~~~~al~~~p~~ 618 (640)
++++|+..|+++++.+|++
T Consensus 100 ~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 100 NANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHC-----
T ss_pred CHHHHHHHHHHHHHhCcCC
Confidence 5555555555555555543
No 166
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.45 E-value=7.3e-13 Score=111.65 Aligned_cols=104 Identities=22% Similarity=0.295 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHccCHHHHHHHHHHHHHh----
Q 006562 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPM-------YPE-----ALIGRGTARAFQRELEAAISDFTEAIQS---- 444 (640)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~-------~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~---- 444 (640)
...++..|..++..|+|++|+..|+++++.+|+ +.. +|.++|.++..+|++++|+..|++++++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 667888999999999999999999999999998 333 7777777777777777777777777777
Q ss_pred ---CCCcHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 006562 445 ---NPSAGEAW----KRRGQARAALGESVEAIQDLSKALEFEPNSAD 484 (640)
Q Consensus 445 ---~p~~~~~~----~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 484 (640)
+|+++.+| +.+|.++..+|++++|+..|++++++.|++..
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~ 137 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG 137 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence 77777777 77777777777777777777777777666543
No 167
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.43 E-value=3.4e-13 Score=113.39 Aligned_cols=105 Identities=13% Similarity=0.186 Sum_probs=89.8
Q ss_pred hcCCHHHHHHHHHHHHccc-CchhHHHhHHHHHHhhhcH----------HHHHHHHHHHHHcCCCchHHHHHHHHHHHHc
Q 006562 48 SLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELH----------KHVIRDCDKALQLDPTLLQAYILKGCAFSAL 116 (640)
Q Consensus 48 ~~~~y~~Ai~~y~~ai~~~-~~~~~~~~~A~~~~~~g~~----------~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~ 116 (640)
+.+.|++|+..|.++++++ .++..|+++|.++..+|++ ++|+..|++||+++|++.++|+.+|.+|.++
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 4457899999999999999 5667799999999999886 5999999999999999999999999999998
Q ss_pred C-----------CHHHHHHHHHHHHhhccCChHHHHHHHhHHHHHHHH
Q 006562 117 G-----------RKEEALSVWEKGYEHALHQSADLKQFLELEELLTAA 153 (640)
Q Consensus 117 g-----------~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~ 153 (640)
| ++++|+.+|++|++++|+.+..... +++.+....+
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~a-l~~~~ka~el 140 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKS-LEMTAKAPQL 140 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH-HHHHHTHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHhCHhc
Confidence 5 8999999999999999998655433 4444444433
No 168
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.42 E-value=3.6e-12 Score=116.02 Aligned_cols=96 Identities=18% Similarity=0.124 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcc------cH
Q 006562 485 ILHERGIVNFKFKDFNAAVEDLSACVKL---DKEN----KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN------FL 551 (640)
Q Consensus 485 ~~~~la~~~~~~~~~~~A~~~~~~al~~---~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~------~~ 551 (640)
++..+|.++...|++++|+.++++++.. .+++ ..++..+|.++...|++++|+..+++++...+. ..
T Consensus 68 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 147 (203)
T 3gw4_A 68 ALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIA 147 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHH
Confidence 3344444444444444444444444433 1111 223444444444444444444444444432111 02
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 006562 552 EAWGHLTQFYQDLANSEKALECLQQVLYI 580 (640)
Q Consensus 552 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 580 (640)
.++..+|.++...|++++|+.++++++..
T Consensus 148 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 148 CAFRGLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 23344555555555555555555554443
No 169
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=3.9e-12 Score=109.15 Aligned_cols=116 Identities=21% Similarity=0.135 Sum_probs=73.7
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHH
Q 006562 514 KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF---LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHL 590 (640)
Q Consensus 514 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 590 (640)
|.+...++.+|..+...|++++|+..|++++...|++ ..++..+|.++...|++++|+..+++++...|.++.+++.
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 4455556666666666666666666666666666655 5666666666666666666666666666666666666666
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHH
Q 006562 591 RGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCY 629 (640)
Q Consensus 591 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 629 (640)
+|.++...|++++|+.+|+++++++|++..++..++.+.
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 666666666666666666666666666666666555554
No 170
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.41 E-value=2.9e-12 Score=116.71 Aligned_cols=157 Identities=13% Similarity=0.045 Sum_probs=122.4
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHcCCH
Q 006562 460 AALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKL------DKENKSAYTYLGLALSSIGEY 533 (640)
Q Consensus 460 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~~~~~~~~~~la~~~~~~g~~ 533 (640)
+..|++++|...++......+....++..+|.++...|++++|+.++++++.. .+....++..+|.++...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 45677777777544444333345667788888888888888888888888773 344567889999999999999
Q ss_pred HHHHHHHHHHHcc---Cc----ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CC----hHHHHHHHHHHHhcCC
Q 006562 534 KKAEEAHLKAIQL---DR----NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK--RF----SKAYHLRGLLLHGLGQ 600 (640)
Q Consensus 534 ~~A~~~~~~a~~~---~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--~~----~~~~~~la~~~~~~g~ 600 (640)
++|+..+++++.. .+ ....++..+|.++...|++++|+.++++++...+ .+ ..++..+|.++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 9999999999987 33 3356789999999999999999999999987643 22 2356899999999999
Q ss_pred HHHHHHHHHHhhccCC
Q 006562 601 HKKAIKDLSSGLGIDP 616 (640)
Q Consensus 601 ~~~A~~~~~~al~~~p 616 (640)
+++|+.++++++++..
T Consensus 163 ~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 163 LLEAQQHWLRARDIFA 178 (203)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999997643
No 171
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=5.3e-12 Score=108.31 Aligned_cols=120 Identities=21% Similarity=0.230 Sum_probs=102.0
Q ss_pred cCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHH
Q 006562 376 SKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAW 452 (640)
Q Consensus 376 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 452 (640)
..+.++..++.+|..++..|++++|+..|+++++.+|++ ..++..+|.++...|++++|+..+++++..+|.++.++
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 102 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL 102 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence 456678888889999999999999999999999988887 78888888888888888888888888888888888888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 006562 453 KRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFK 495 (640)
Q Consensus 453 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 495 (640)
+.+|.++...|++++|+.+|++++..+|.+..++..++.+...
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 8888888888888888888888888888888887777766543
No 172
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.40 E-value=6.6e-12 Score=104.91 Aligned_cols=109 Identities=20% Similarity=0.240 Sum_probs=70.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HHHHHHHHH
Q 006562 384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYP---EALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAWKRRGQ 457 (640)
Q Consensus 384 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~ 457 (640)
++.+|..++..|++++|+..|+++++.+|+++ .+++.+|.++...|++++|+..|++++..+|++ +.+++.+|.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 45566666666666666666666666666665 566666666666666666666666666666666 566666666
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 006562 458 ARAALGESVEAIQDLSKALEFEPNSADILHERGIV 492 (640)
Q Consensus 458 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 492 (640)
++...|++++|+..|++++...|+++.+......+
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l 119 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERL 119 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 66666666666666666666666665554444333
No 173
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.39 E-value=9.8e-12 Score=103.87 Aligned_cols=111 Identities=13% Similarity=0.007 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHH
Q 006562 417 ALIGRGTARAFQRELEAAISDFTEAIQSNPSAG---EAWKRRGQARAALGESVEAIQDLSKALEFEPNS---ADILHERG 490 (640)
Q Consensus 417 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la 490 (640)
+++.+|.++...|++++|+..|++++...|+++ .+++.+|.++...|++++|+..|++++...|++ +.+++.+|
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 356667777777777777777777777776665 566677777777777777777777777777766 66666777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 006562 491 IVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLAL 527 (640)
Q Consensus 491 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 527 (640)
.++...|++++|+..|++++...|+++.+......+.
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~ 120 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQ 120 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 7777777777777777777777666665555444443
No 174
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.38 E-value=4.7e-12 Score=105.91 Aligned_cols=117 Identities=17% Similarity=0.100 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-------hHHHH
Q 006562 517 KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF-------SKAYH 589 (640)
Q Consensus 517 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~ 589 (640)
+..++.+|.++...|++++|+..|.+++...|.++.++..+|.++...|++++|+.++++++...|.+ +.++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 34555566666666666666666666666666666666666666666666666666666666655544 55666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCC
Q 006562 590 LRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGE 634 (640)
Q Consensus 590 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 634 (640)
.+|.++...|++++|+.+|+++++..| ++..+..++.+...+++
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 127 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKE 127 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence 666666666666666666666666666 36666666666555443
No 175
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.38 E-value=1.3e-12 Score=107.15 Aligned_cols=92 Identities=11% Similarity=0.036 Sum_probs=81.5
Q ss_pred hcCCHHHHHHHHHHHHcc---c-CchhHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHH
Q 006562 48 SLRNWSKAIRILDSLLAQ---S-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEAL 123 (640)
Q Consensus 48 ~~~~y~~Ai~~y~~ai~~---~-~~~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~~~~A~ 123 (640)
..|+|++|+.+|++++++ + .++.+++++|.+|..+|+|++|+..++++++.+|+++.+++.+|.+|..+|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 468999999999999999 4 344668999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCChHH
Q 006562 124 SVWEKGYEHALHQSAD 139 (640)
Q Consensus 124 ~~~~~al~~~~~~~~~ 139 (640)
..|++++++.|..+..
T Consensus 82 ~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 82 ELLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHhCCCcHHH
Confidence 9999999999988654
No 176
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.36 E-value=1e-11 Score=103.73 Aligned_cols=114 Identities=14% Similarity=0.122 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc-------HHHHH
Q 006562 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA-------GEAWK 453 (640)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~ 453 (640)
+..++.+|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+.++++++...|.+ +.++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 45666777777777777777777777777777777777777777777777777777777777766654 66666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 006562 454 RRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFK 495 (640)
Q Consensus 454 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 495 (640)
.+|.++...|++++|+..|++++...| ++.....++.+...
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 677777777777777777777777666 45555555555443
No 177
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.35 E-value=3.3e-13 Score=139.84 Aligned_cols=133 Identities=20% Similarity=0.188 Sum_probs=100.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHh
Q 006562 485 ILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL 564 (640)
Q Consensus 485 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 564 (640)
.+..+|.++...|++++|+..|+++++.+|++..++..+|.++..+|++++|+..++++++.+|.++.++..+|.+|..+
T Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~ 87 (477)
T 1wao_1 8 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL 87 (477)
T ss_dssp TSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 34556667777788888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHH--HHhcCCHHHHHHHHH-----------HhhccCCC
Q 006562 565 ANSEKALECLQQVLYIDKRFSKAYHLRGLL--LHGLGQHKKAIKDLS-----------SGLGIDPS 617 (640)
Q Consensus 565 g~~~~A~~~~~~al~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~-----------~al~~~p~ 617 (640)
|++++|+..|+++++.+|++..++..++.+ +...|++++|+..++ +++.+.|+
T Consensus 88 g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~ 153 (477)
T 1wao_1 88 GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDE 153 (477)
T ss_dssp TCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTT
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccc
Confidence 888888888888888888777777777777 777788888888888 66666654
No 178
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.35 E-value=4.6e-12 Score=102.65 Aligned_cols=106 Identities=19% Similarity=0.214 Sum_probs=64.3
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--ChHHHHH
Q 006562 513 DKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKR--FSKAYHL 590 (640)
Q Consensus 513 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~ 590 (640)
+|++...+..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..++++++..|. +..++..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 34455555556666666666666666666666666655666666666666666666666666666666666 6666666
Q ss_pred HHHHHHhc-CCHHHHHHHHHHhhccCCCC
Q 006562 591 RGLLLHGL-GQHKKAIKDLSSGLGIDPSN 618 (640)
Q Consensus 591 la~~~~~~-g~~~~A~~~~~~al~~~p~~ 618 (640)
+|.++... |++++|+.++++++...|++
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 66666666 66666666666666655543
No 179
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.35 E-value=5.6e-12 Score=102.16 Aligned_cols=101 Identities=17% Similarity=0.136 Sum_probs=41.7
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHH
Q 006562 414 YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPN--SADILHERGI 491 (640)
Q Consensus 414 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~ 491 (640)
++.++..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..++++++..|. +..++..+|.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 33333444444444444444444444444444444444444444444444444444444444444444 3444444444
Q ss_pred HHHhc-CCHHHHHHHHHHHHHhCC
Q 006562 492 VNFKF-KDFNAAVEDLSACVKLDK 514 (640)
Q Consensus 492 ~~~~~-~~~~~A~~~~~~al~~~~ 514 (640)
++... |++++|+.++++++...|
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhccc
Confidence 44444 444444444444443333
No 180
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.35 E-value=1.6e-11 Score=126.52 Aligned_cols=200 Identities=9% Similarity=0.006 Sum_probs=167.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 006562 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP-----------------EALIGRGTARAFQRELEAAISDFTEAIQ 443 (640)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~~al~ 443 (640)
|...+..|..+...|+|++|++.|.++++..|... .++..+|.+|...|++++|++++.+++.
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45577789999999999999999999999887642 4688999999999999999999999988
Q ss_pred hCCCcH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006562 444 SNPSAG------EAWKRRGQARAALGESVEAIQDLSKALEFEP------NSADILHERGIVNFKFKDFNAAVEDLSACVK 511 (640)
Q Consensus 444 ~~p~~~------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 511 (640)
..+... .+...++.++...|++++|+..+++++...+ ....++..+|.++...|++.+|...+.+++.
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 163 (434)
T 4b4t_Q 84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLR 163 (434)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHH
Confidence 765432 3456678888889999999999999987643 2256888999999999999999999999987
Q ss_pred hC------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcc---c----HHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 006562 512 LD------KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN---F----LEAWGHLTQFYQDLANSEKALECLQQVL 578 (640)
Q Consensus 512 ~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~---~----~~~~~~la~~~~~~g~~~~A~~~~~~al 578 (640)
.. +....++..+|.+|...|++++|...+++++...+. . ...+..+|.++...|++++|..+|..++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 164 EFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 52 333678999999999999999999999999876432 1 4567788999999999999999999998
Q ss_pred Hh
Q 006562 579 YI 580 (640)
Q Consensus 579 ~~ 580 (640)
..
T Consensus 244 ~~ 245 (434)
T 4b4t_Q 244 ES 245 (434)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 181
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.35 E-value=3.3e-13 Score=139.89 Aligned_cols=136 Identities=19% Similarity=0.217 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 006562 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (640)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 460 (640)
+..+..+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|+++.++..+|.+|.
T Consensus 6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 85 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 85 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 44556678888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH-----------HHHHhCCCc
Q 006562 461 ALGESVEAIQDLSKALEFEPNSADILHERGIV--NFKFKDFNAAVEDLS-----------ACVKLDKEN 516 (640)
Q Consensus 461 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~--~~~~~~~~~A~~~~~-----------~al~~~~~~ 516 (640)
.+|++++|+..|+++++..|++..++..++.+ +...|++++|+..++ +++...|+.
T Consensus 86 ~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 86 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY 154 (477)
T ss_dssp HHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence 99999999999999999999999999999888 888999999999999 777666543
No 182
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.34 E-value=1.1e-12 Score=129.56 Aligned_cols=154 Identities=15% Similarity=0.073 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 006562 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (640)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 460 (640)
+..+..+|..++..|+|++|+..|++++...|.+.. +...|++.++...+. ..++..+|.++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~--------~~~~~~~~~~~~~l~---------~~~~~nla~~~~ 241 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM--------FQLYGKYQDMALAVK---------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH--------HTCCHHHHHHHHHHH---------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh--------hhhcccHHHHHHHHH---------HHHHHHHHHHHH
Confidence 667889999999999999999999999999987541 223444555443332 236778888888
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH-HHcCCHHHHHHH
Q 006562 461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLAL-SSIGEYKKAEEA 539 (640)
Q Consensus 461 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~-~~~g~~~~A~~~ 539 (640)
..|++++|+..+++++.++|.+..+++.+|.++...|++++|+..|+++++++|++..++..++.+. ...+..+++...
T Consensus 242 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888888888888888888888888888888888888888888888773 445667777888
Q ss_pred HHHHHccCcccH
Q 006562 540 HLKAIQLDRNFL 551 (640)
Q Consensus 540 ~~~a~~~~~~~~ 551 (640)
|.+++...|.++
T Consensus 322 ~~~~l~~~p~~~ 333 (338)
T 2if4_A 322 YKGIFKGKDEGG 333 (338)
T ss_dssp ------------
T ss_pred HHHhhCCCCCCC
Confidence 888888877654
No 183
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.34 E-value=3.1e-12 Score=104.89 Aligned_cols=107 Identities=14% Similarity=0.100 Sum_probs=68.7
Q ss_pred cCCHHHHHHHHHHHHcc---CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHH
Q 006562 530 IGEYKKAEEAHLKAIQL---DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIK 606 (640)
Q Consensus 530 ~g~~~~A~~~~~~a~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~ 606 (640)
.|++++|+..|++++.. +|.++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 45666667777777666 466666677777777777777777777777777777777777777777777777777777
Q ss_pred HHHHhhccCCCCHHHHHHHHHHHHHcCCcc
Q 006562 607 DLSSGLGIDPSNIECLYLRASCYHAIGEYR 636 (640)
Q Consensus 607 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 636 (640)
.+++++...|+++.+......+....+.++
T Consensus 83 ~~~~al~~~p~~~~~~~~~~ai~~~~~~l~ 112 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQSYKQAILFYADKLD 112 (117)
T ss_dssp HHHHHHHHHCCCHHHHHTHHHHHHHTTCTT
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHHHHH
Confidence 777777776666666555554544444443
No 184
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.34 E-value=1.2e-12 Score=129.40 Aligned_cols=161 Identities=15% Similarity=0.089 Sum_probs=85.6
Q ss_pred HHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 006562 408 LKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILH 487 (640)
Q Consensus 408 l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 487 (640)
++..+.....+..+|..++..|++++|+..|++++...|.+.. +...+++.++...+. ..++.
T Consensus 172 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~--------~~~~~~~~~~~~~l~---------~~~~~ 234 (338)
T 2if4_A 172 VEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM--------FQLYGKYQDMALAVK---------NPCHL 234 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH--------HTCCHHHHHHHHHHH---------THHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh--------hhhcccHHHHHHHHH---------HHHHH
Confidence 3334445677788888888888888888888888888776541 223344444443321 13677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHH-HHHhcC
Q 006562 488 ERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQF-YQDLAN 566 (640)
Q Consensus 488 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~-~~~~g~ 566 (640)
.+|.++...|++++|+.++++++.++|++..+++.+|.++..+|++++|+..|++++.++|++..++..++.+ ....+.
T Consensus 235 nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~ 314 (338)
T 2if4_A 235 NIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKAL 314 (338)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence 7788888888888888888888888887777888888888888888888888888877777777777777776 334456
Q ss_pred HHHHHHHHHHHHHhCCCCh
Q 006562 567 SEKALECLQQVLYIDKRFS 585 (640)
Q Consensus 567 ~~~A~~~~~~al~~~~~~~ 585 (640)
.+.+...|.+++...|.++
T Consensus 315 ~~~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 315 YQKQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHhhCCCCCCC
Confidence 6677777777777766543
No 185
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.34 E-value=4.2e-11 Score=123.32 Aligned_cols=200 Identities=11% Similarity=0.058 Sum_probs=169.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006562 415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG-----------------EAWKRRGQARAALGESVEAIQDLSKALE 477 (640)
Q Consensus 415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----------------~~~~~la~~~~~~~~~~~A~~~~~~al~ 477 (640)
|......|..+...|+|++|++.|.++++..|... .++..+|.+|...|++++|++++.+++.
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45567788889999999999999999999887642 3688899999999999999999999998
Q ss_pred hCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 006562 478 FEPNSA------DILHERGIVNFKFKDFNAAVEDLSACVKLDK------ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ 545 (640)
Q Consensus 478 ~~p~~~------~~~~~la~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 545 (640)
..+... .+...++.++...|+++.|+.++++++...+ ....++..+|.++...|++++|...+++++.
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 163 (434)
T 4b4t_Q 84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLR 163 (434)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHH
Confidence 765542 2456678888889999999999999987642 2367889999999999999999999999876
Q ss_pred c------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC---CC----hHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 006562 546 L------DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK---RF----SKAYHLRGLLLHGLGQHKKAIKDLSSGL 612 (640)
Q Consensus 546 ~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~---~~----~~~~~~la~~~~~~g~~~~A~~~~~~al 612 (640)
. .+....++..+|.+|...|++++|..++++++...+ .. ...+..+|.++...|++.+|..+|..++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 164 EFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 5 344478999999999999999999999999987643 22 3467788999999999999999999997
Q ss_pred cc
Q 006562 613 GI 614 (640)
Q Consensus 613 ~~ 614 (640)
..
T Consensus 244 ~~ 245 (434)
T 4b4t_Q 244 ES 245 (434)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 186
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.34 E-value=6.2e-12 Score=105.73 Aligned_cols=90 Identities=20% Similarity=0.211 Sum_probs=60.9
Q ss_pred HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHH----------HHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 006562 393 NEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELE----------AAISDFTEAIQSNPSAGEAWKRRGQARAAL 462 (640)
Q Consensus 393 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~----------~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 462 (640)
+.+.|++|+..++++++.+|+++.+|+.+|.++...++++ +|+..|+++++++|++..+|+.+|.+|..+
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 3456788888888888888888888888888888877654 666666666666666666666666666665
Q ss_pred C-----------CHHHHHHHHHHHHHhCCCC
Q 006562 463 G-----------ESVEAIQDLSKALEFEPNS 482 (640)
Q Consensus 463 ~-----------~~~~A~~~~~~al~~~p~~ 482 (640)
| ++++|+.+|+++++++|++
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~ 124 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDN 124 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence 4 4444444444444444443
No 187
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.32 E-value=1.2e-11 Score=123.42 Aligned_cols=138 Identities=17% Similarity=0.190 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHH
Q 006562 483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQ 562 (640)
Q Consensus 483 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 562 (640)
...+..+|..++..|++++|+..|+++++..+..+ +...........|....++.++|.++.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR------------------AAAEDADGAKLQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH------------------HHSCHHHHGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc------------------cccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788899999999999999999999998543221 011123333455556666666666666
Q ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCCcccc
Q 006562 563 DLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREA 638 (640)
Q Consensus 563 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 638 (640)
.+|++++|+.+++++++.+|+++.+++.+|.++..+|++++|+..|+++++++|++..++..++.++..+++++++
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666666666666666666666666666666666666666666666666666666655543
No 188
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.32 E-value=1.7e-08 Score=104.52 Aligned_cols=203 Identities=7% Similarity=-0.089 Sum_probs=159.0
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006562 398 ASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALE 477 (640)
Q Consensus 398 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 477 (640)
......|++++...|..+..|+..+..+...|+.+.|...|++++.. |.+...+...+... ..+ +. ++++..
T Consensus 196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~-e~~---~~---~~~l~~ 267 (493)
T 2uy1_A 196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVM-DEE---AV---YGDLKR 267 (493)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHT-TCT---HH---HHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhc-chh---HH---HHHHHH
Confidence 45678999999999999999999999999999999999999999999 98877666554431 111 11 222221
Q ss_pred h---C----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHH
Q 006562 478 F---E----------PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIG-EYKKAEEAHLKA 543 (640)
Q Consensus 478 ~---~----------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~a 543 (640)
. . +....+|...+....+.++.+.|...|.++ ...+.....|...|.+....+ +.+.|...|+.+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~a 346 (493)
T 2uy1_A 268 KYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSG 346 (493)
T ss_dssp HTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred HHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 1 0 112356777888888888999999999999 433335667776777766666 699999999999
Q ss_pred HccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 006562 544 IQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLG 613 (640)
Q Consensus 544 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 613 (640)
+...|+.+..+...+......|+.+.|..+|+++ +.....|......-...|+.+.+...+++++.
T Consensus 347 l~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 347 LLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999998888888888888999999999999997 34677888888888888999999998888874
No 189
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.31 E-value=2e-11 Score=121.88 Aligned_cols=140 Identities=18% Similarity=0.190 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 006562 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (640)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 460 (640)
+..+..+|..++..|+|++|+..|+++++..+..+ +...........|.+..++..+|.++.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR------------------AAAEDADGAKLQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH------------------HHSCHHHHGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc------------------cccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 55678899999999999999999999998432211 001122233344445555666666666
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 006562 461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEE 538 (640)
Q Consensus 461 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~ 538 (640)
.+|++++|+.+++++++++|.++.+++.+|.++...|++++|+..|+++++++|++..++..++.++...++++++.+
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666666666666666666666666666666666666666666666666666555555543
No 190
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.26 E-value=4.4e-11 Score=104.12 Aligned_cols=137 Identities=20% Similarity=0.185 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 006562 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSA------DILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYL 523 (640)
Q Consensus 450 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l 523 (640)
.++..+|.++...|++++|+.++++++...+... .++..+|.++...|++++|+.++++++...+....
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~----- 84 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD----- 84 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC-----
Confidence 3455566666666666666666666655533211 24445555555555555555555555544322100
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC------CChHHHHHHHHHHHh
Q 006562 524 GLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK------RFSKAYHLRGLLLHG 597 (640)
Q Consensus 524 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~------~~~~~~~~la~~~~~ 597 (640)
.+....++..+|.++...|++++|+.++++++...+ ....++..+|.++..
T Consensus 85 -----------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 141 (164)
T 3ro3_A 85 -----------------------RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTA 141 (164)
T ss_dssp -----------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred -----------------------cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHH
Confidence 000133444455555555555555555555544321 112345555555555
Q ss_pred cCCHHHHHHHHHHhhcc
Q 006562 598 LGQHKKAIKDLSSGLGI 614 (640)
Q Consensus 598 ~g~~~~A~~~~~~al~~ 614 (640)
.|++++|+.++++++++
T Consensus 142 ~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 142 LGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHH
Confidence 55555555555555544
No 191
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.25 E-value=7e-11 Score=102.81 Aligned_cols=131 Identities=19% Similarity=0.181 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------
Q 006562 415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG------EAWKRRGQARAALGESVEAIQDLSKALEFEPNS------ 482 (640)
Q Consensus 415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------ 482 (640)
..++..+|.++...|++++|+.+++++++..+... .++..+|.++...|++++|+.++++++...+..
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 56789999999999999999999999998765432 478899999999999999999999999875432
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 006562 483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKE------NKSAYTYLGLALSSIGEYKKAEEAHLKAIQ 545 (640)
Q Consensus 483 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 545 (640)
..++..+|.++...|++++|+.++++++...+. ...++..+|.++...|++++|+..+++++.
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 345667777777777777777777777655321 123344445555555555555555544443
No 192
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.15 E-value=8.5e-08 Score=99.34 Aligned_cols=56 Identities=5% Similarity=-0.097 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 006562 467 EAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYL 523 (640)
Q Consensus 467 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l 523 (640)
.....|++++...|..+.+|...+..+...|+.+.|...|++++.. |.+...+...
T Consensus 197 Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y 252 (493)
T 2uy1_A 197 RMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYY 252 (493)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 3556777777777777777777777777777777777777777777 7765544433
No 193
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.14 E-value=3.7e-10 Score=91.22 Aligned_cols=89 Identities=18% Similarity=0.207 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCC------HHHHHH
Q 006562 551 LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN------IECLYL 624 (640)
Q Consensus 551 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~ 624 (640)
...+..+|.++...|++++|+..|++++..+|.++.++..+|.++..+|++++|+..++++++++|++ ..+++.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 45667777777777777777777777777777777777777777777777777777777777777777 677777
Q ss_pred HHHHHHHcCCccccc
Q 006562 625 RASCYHAIGEYREAV 639 (640)
Q Consensus 625 la~~~~~~g~~~~Al 639 (640)
+|.++..+|+++.|+
T Consensus 84 ~~~~~~~~~~~~~a~ 98 (111)
T 2l6j_A 84 LELAQGAVGSVQIPV 98 (111)
T ss_dssp HHHHHHHHHCCCCCS
T ss_pred HHHHHHHHHhHhhhH
Confidence 777777777777665
No 194
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.08 E-value=1.3e-09 Score=84.25 Aligned_cols=85 Identities=26% Similarity=0.316 Sum_probs=63.7
Q ss_pred ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHH
Q 006562 549 NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASC 628 (640)
Q Consensus 549 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 628 (640)
..+.++..+|.++...|++++|+.+|++++...|.++.++..+|.++...|++++|+.+++++++.+|++..++..+|.+
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34566777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHcC
Q 006562 629 YHAIG 633 (640)
Q Consensus 629 ~~~~g 633 (640)
+..+|
T Consensus 87 ~~~~g 91 (91)
T 1na3_A 87 KQKQG 91 (91)
T ss_dssp HHHHC
T ss_pred HHhcC
Confidence 76654
No 195
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.06 E-value=1e-09 Score=89.37 Aligned_cols=82 Identities=18% Similarity=0.251 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006562 399 SAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEF 478 (640)
Q Consensus 399 ~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 478 (640)
.|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++..
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45666666777777777777777777777777777777777777777766666777777777777777777777776666
Q ss_pred CC
Q 006562 479 EP 480 (640)
Q Consensus 479 ~p 480 (640)
.|
T Consensus 83 ~~ 84 (115)
T 2kat_A 83 AQ 84 (115)
T ss_dssp HH
T ss_pred cc
Confidence 55
No 196
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.06 E-value=1.1e-09 Score=89.24 Aligned_cols=82 Identities=20% Similarity=0.206 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 006562 501 AAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI 580 (640)
Q Consensus 501 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 580 (640)
.|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++..
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34555566666666666666666666666666666666666666666655555666666666666666666666665555
Q ss_pred CC
Q 006562 581 DK 582 (640)
Q Consensus 581 ~~ 582 (640)
.|
T Consensus 83 ~~ 84 (115)
T 2kat_A 83 AQ 84 (115)
T ss_dssp HH
T ss_pred cc
Confidence 44
No 197
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.05 E-value=1.1e-10 Score=94.31 Aligned_cols=92 Identities=18% Similarity=0.276 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc------HHHHHH
Q 006562 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA------GEAWKR 454 (640)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~ 454 (640)
+..++.+|..++..|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++.+|++ ..++..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 45566677777777777777777777777777777777777777777777777777777777777766 666666
Q ss_pred HHHHHHHcCCHHHHHHHH
Q 006562 455 RGQARAALGESVEAIQDL 472 (640)
Q Consensus 455 la~~~~~~~~~~~A~~~~ 472 (640)
+|.++...|+++.|+..+
T Consensus 84 ~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHhHhhhHhHH
Confidence 666666666655554443
No 198
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.03 E-value=3.1e-09 Score=82.10 Aligned_cols=83 Identities=28% Similarity=0.382 Sum_probs=53.3
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 006562 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR 459 (640)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 459 (640)
++..++.+|..+...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++.+|.++.++..+|.++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 34556666666666666666666666666666666666666666666666666666666666666666666666666665
Q ss_pred HHc
Q 006562 460 AAL 462 (640)
Q Consensus 460 ~~~ 462 (640)
...
T Consensus 88 ~~~ 90 (91)
T 1na3_A 88 QKQ 90 (91)
T ss_dssp HHH
T ss_pred Hhc
Confidence 543
No 199
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.96 E-value=2.4e-09 Score=84.48 Aligned_cols=70 Identities=16% Similarity=0.207 Sum_probs=65.1
Q ss_pred CchhHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCC
Q 006562 67 YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQ 136 (640)
Q Consensus 67 ~~~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~~~~A~~~~~~al~~~~~~ 136 (640)
.++..++++|.+|+.+|+|++|+..++++++++|+++.+|+.+|.+|..+|++++|+..|++++++.|..
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence 4556789999999999999999999999999999999999999999999999999999999998876643
No 200
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.91 E-value=6.9e-09 Score=81.83 Aligned_cols=86 Identities=17% Similarity=0.141 Sum_probs=44.7
Q ss_pred CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCC--CHHHHHH
Q 006562 547 DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS--NIECLYL 624 (640)
Q Consensus 547 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~ 624 (640)
+|+++.+++.+|.++...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|++++++.|. +......
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~ 82 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSE 82 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHH
Confidence 35555555555555555555555555555555555555555555555555555555555555555554432 2333344
Q ss_pred HHHHHHHc
Q 006562 625 RASCYHAI 632 (640)
Q Consensus 625 la~~~~~~ 632 (640)
+..++...
T Consensus 83 l~~~l~~~ 90 (100)
T 3ma5_A 83 LQDAKLKA 90 (100)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 44444433
No 201
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.90 E-value=3.1e-09 Score=83.73 Aligned_cols=89 Identities=18% Similarity=0.264 Sum_probs=60.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 006562 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPE-ALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG 463 (640)
Q Consensus 385 ~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 463 (640)
+.+|..++..|++++|+..|+++++.+|+++. +++.+|.++...|++++|+..|+++++.+|++..++.. +
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 45566777777777777777777777777777 77777777777777777777777777777776665532 4
Q ss_pred CHHHHHHHHHHHHHhCCC
Q 006562 464 ESVEAIQDLSKALEFEPN 481 (640)
Q Consensus 464 ~~~~A~~~~~~al~~~p~ 481 (640)
.+.+++..|+++...+|+
T Consensus 76 ~~~~a~~~~~~~~~~~p~ 93 (99)
T 2kc7_A 76 MVMDILNFYNKDMYNQLE 93 (99)
T ss_dssp HHHHHHHHHCCTTHHHHC
T ss_pred HHHHHHHHHHHHhccCcc
Confidence 455556666555555544
No 202
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.89 E-value=3.3e-08 Score=83.11 Aligned_cols=108 Identities=18% Similarity=0.159 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHH----hcCHHHHHHHH
Q 006562 499 FNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD----LANSEKALECL 574 (640)
Q Consensus 499 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~ 574 (640)
+++|+.+|+++.+...... . +|.+|...+..++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+.+|
T Consensus 11 ~~~A~~~~~~aa~~g~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~ 84 (138)
T 1klx_A 11 LKKAIQYYVKACELNEMFG--C--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYY 84 (138)
T ss_dssp HHHHHHHHHHHHHTTCTTH--H--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHhh--h--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHH
Confidence 4444444444444432211 1 444444444444444444444443 334444455555444 44555555555
Q ss_pred HHHHHhCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHhhcc
Q 006562 575 QQVLYIDKRFSKAYHLRGLLLHG----LGQHKKAIKDLSSGLGI 614 (640)
Q Consensus 575 ~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~ 614 (640)
+++.+. .++.+++.+|.+|.. .+++++|+.+|+++.+.
T Consensus 85 ~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 85 SKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 555443 344555555555555 45555555555555444
No 203
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.88 E-value=7.7e-08 Score=92.67 Aligned_cols=146 Identities=14% Similarity=0.161 Sum_probs=77.5
Q ss_pred cHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 006562 380 SVDFRLSRGIAQVNEGK---YASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG 456 (640)
Q Consensus 380 ~~~~~~~~a~~~~~~g~---~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 456 (640)
++.-++..|..++..++ +.+|+.+|+++++.+|+++.++..++.+|.....+ .|........
T Consensus 195 ~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~-------------~~~~~~~~~~-- 259 (372)
T 3ly7_A 195 ALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQ-------------HPLDEKQLAA-- 259 (372)
T ss_dssp GGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH-------------SCCCHHHHHH--
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcc-------------CCCchhhHHH--
Confidence 34445667777776554 47888889999999998888888888877621110 0111000000
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH
Q 006562 457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKA 536 (640)
Q Consensus 457 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A 536 (640)
...+... ..++...|.++.++..++..+...|++++|+..+++++.++|+ ...+..+|.++...|++++|
T Consensus 260 --------l~~a~~a-~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA 329 (372)
T 3ly7_A 260 --------LNTEIDN-IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREA 329 (372)
T ss_dssp --------HHHHHHH-HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHH
T ss_pred --------HHHHHHH-HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHH
Confidence 0111110 0122334555555555555555555555555555555555542 34445555555555555555
Q ss_pred HHHHHHHHccCccc
Q 006562 537 EEAHLKAIQLDRNF 550 (640)
Q Consensus 537 ~~~~~~a~~~~~~~ 550 (640)
+..|.+|+.++|..
T Consensus 330 ~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 330 ADAYLTAFNLRPGA 343 (372)
T ss_dssp HHHHHHHHHHSCSH
T ss_pred HHHHHHHHhcCCCc
Confidence 55555555555544
No 204
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.86 E-value=5.5e-09 Score=82.26 Aligned_cols=88 Identities=14% Similarity=0.044 Sum_probs=50.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHccCcccHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCC
Q 006562 522 YLGLALSSIGEYKKAEEAHLKAIQLDRNFLE-AWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQ 600 (640)
Q Consensus 522 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~ 600 (640)
..|.++...|++++|+..|++++..+|.++. ++..+|.++...|++++|+..|++++..+|+++.++.. +.
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~ 76 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KM 76 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HH
Confidence 4455555556666666666666666665555 66666666666666666666666666666655554432 34
Q ss_pred HHHHHHHHHHhhccCCC
Q 006562 601 HKKAIKDLSSGLGIDPS 617 (640)
Q Consensus 601 ~~~A~~~~~~al~~~p~ 617 (640)
+.+++..|+++...+|+
T Consensus 77 ~~~a~~~~~~~~~~~p~ 93 (99)
T 2kc7_A 77 VMDILNFYNKDMYNQLE 93 (99)
T ss_dssp HHHHHHHHCCTTHHHHC
T ss_pred HHHHHHHHHHHhccCcc
Confidence 45555555555554444
No 205
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.86 E-value=1e-07 Score=91.88 Aligned_cols=157 Identities=13% Similarity=0.101 Sum_probs=116.1
Q ss_pred HHHHhCCCCHHHH--HHHHHHHHHcc---CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 006562 406 QILKEDPMYPEAL--IGRGTARAFQR---ELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEP 480 (640)
Q Consensus 406 ~~l~~~~~~~~~~--~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 480 (640)
++....|.++.+| +..|..+...+ +..+|+.+|+++++.+|+++.++..++.+|... ....|
T Consensus 185 r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~-------------~~~~~ 251 (372)
T 3ly7_A 185 TLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVR-------------HSQHP 251 (372)
T ss_dssp HHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-------------HHHSC
T ss_pred HHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-------------hccCC
Confidence 3445566665443 45566666544 457899999999999999999998888887711 11112
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHH
Q 006562 481 NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQF 560 (640)
Q Consensus 481 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 560 (640)
........ ...+... ..++...|.++.++..++..+...|++++|+..+++++.++|+ ..++..+|.+
T Consensus 252 ~~~~~~~~----------l~~a~~a-~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~ 319 (372)
T 3ly7_A 252 LDEKQLAA----------LNTEIDN-IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKV 319 (372)
T ss_dssp CCHHHHHH----------HHHHHHH-HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHH
T ss_pred CchhhHHH----------HHHHHHH-HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHH
Confidence 22211111 1223331 1344677999999999999999999999999999999999975 7788999999
Q ss_pred HHHhcCHHHHHHHHHHHHHhCCCChHH
Q 006562 561 YQDLANSEKALECLQQVLYIDKRFSKA 587 (640)
Q Consensus 561 ~~~~g~~~~A~~~~~~al~~~~~~~~~ 587 (640)
+...|++++|++.|.+++.++|..+..
T Consensus 320 ~~~~G~~~eA~e~~~~AlrL~P~~~t~ 346 (372)
T 3ly7_A 320 YEMKGMNREAADAYLTAFNLRPGANTL 346 (372)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSCSHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCcChH
Confidence 999999999999999999999987643
No 206
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.85 E-value=7.5e-08 Score=80.89 Aligned_cols=109 Identities=17% Similarity=0.160 Sum_probs=57.3
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHH
Q 006562 396 KYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAA----LGESVEAIQD 471 (640)
Q Consensus 396 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~ 471 (640)
++++|+.+|+++.+..... +. +|.+|...+..++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+.+
T Consensus 10 d~~~A~~~~~~aa~~g~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEMF--GC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHHTTCTT--HH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCHh--hh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 4555555555555544222 22 555555555555555555555544 345555555555555 4555555555
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHh
Q 006562 472 LSKALEFEPNSADILHERGIVNFK----FKDFNAAVEDLSACVKL 512 (640)
Q Consensus 472 ~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~ 512 (640)
|+++.+. .++.+.+.+|.+|.. .+++++|+.+|+++.+.
T Consensus 84 ~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 84 YSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 5555544 345555555555555 45555555555555544
No 207
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.83 E-value=1.9e-07 Score=85.89 Aligned_cols=85 Identities=21% Similarity=0.153 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHccCcc--cHHHHHHHHHHHHHh-----cCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHh-cCCHHH
Q 006562 533 YKKAEEAHLKAIQLDRN--FLEAWGHLTQFYQDL-----ANSEKALECLQQVLYIDKRF-SKAYHLRGLLLHG-LGQHKK 603 (640)
Q Consensus 533 ~~~A~~~~~~a~~~~~~--~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~-~g~~~~ 603 (640)
...|...++++++++|+ +..+|..+|.+|... |+.++|..+|+++++++|+. ..+++.+|..+.. .|++++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34555555555555555 344555555555553 55666666666666666543 5555555555555 355566
Q ss_pred HHHHHHHhhccCCC
Q 006562 604 AIKDLSSGLGIDPS 617 (640)
Q Consensus 604 A~~~~~~al~~~p~ 617 (640)
|..++++++..+|.
T Consensus 259 a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 259 FDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHCCGG
T ss_pred HHHHHHHHHcCCCC
Confidence 66666665554443
No 208
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.80 E-value=2.4e-07 Score=85.28 Aligned_cols=186 Identities=16% Similarity=0.094 Sum_probs=132.0
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC--------------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 006562 397 YASAISIFDQILKEDPMYPEALIGRGTARAFQRE--------------LEAAISDFTEAIQSNPSAGEAWKRRGQARAAL 462 (640)
Q Consensus 397 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~--------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 462 (640)
..-.+..++-.+..+|++.......|..|..-+. ++.....+.++.++.-. . ..+.+.-+....
T Consensus 48 ~P~~Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~r-a-~~y~~raL~~~~ 125 (301)
T 3u64_A 48 LPLVLKVYEALHLQNPAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLR-G-ARYALSSLETAY 125 (301)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHS
T ss_pred ccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHH-H-HHHHHHHHHHhC
Confidence 4567888899999999999988888877754321 11111222222221100 0 011111122233
Q ss_pred CCHHHHHHH-----HHHHH-HhCCCCHHHHHHHHHHHHh-----cC------CHHHHHHHHHHHHHhCCC--cHHHHHHH
Q 006562 463 GESVEAIQD-----LSKAL-EFEPNSADILHERGIVNFK-----FK------DFNAAVEDLSACVKLDKE--NKSAYTYL 523 (640)
Q Consensus 463 ~~~~~A~~~-----~~~al-~~~p~~~~~~~~la~~~~~-----~~------~~~~A~~~~~~al~~~~~--~~~~~~~l 523 (640)
..+.+++.. +..++ ..+|++++.++..|.+... .| ....|...++++++++|+ +..+|..+
T Consensus 126 ~~~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~L 205 (301)
T 3u64_A 126 PGFTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVL 205 (301)
T ss_dssp TTHHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHH
T ss_pred ccHHHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHH
Confidence 555555443 23333 4567788887777766543 13 367899999999999999 67899999
Q ss_pred HHHHHHc-----CCHHHHHHHHHHHHccCccc-HHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCC
Q 006562 524 GLALSSI-----GEYKKAEEAHLKAIQLDRNF-LEAWGHLTQFYQD-LANSEKALECLQQVLYIDKRF 584 (640)
Q Consensus 524 a~~~~~~-----g~~~~A~~~~~~a~~~~~~~-~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~ 584 (640)
|.+|... |+.++|..+|+++++++|+. ...++.+|..+.. .|+++.|..++++++...|..
T Consensus 206 G~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 206 TKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 9999995 99999999999999999975 9999999999988 499999999999999988763
No 209
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.73 E-value=6.2e-08 Score=99.45 Aligned_cols=125 Identities=14% Similarity=-0.001 Sum_probs=67.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCCc---H
Q 006562 454 RRGQARAALGESVEAIQDLSKALEF-----EPNSA---DILHERGIVNFKFKDFNAAVEDLSACVKL-----DKEN---K 517 (640)
Q Consensus 454 ~la~~~~~~~~~~~A~~~~~~al~~-----~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~~~~---~ 517 (640)
..+..+...|+|++|+..+++++++ .|+++ .++..+|.+|..+|+|++|+.++++++.. .|++ .
T Consensus 314 e~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a 393 (490)
T 3n71_A 314 EKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLG 393 (490)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 3444455667777777777776654 23333 34556666666666666666666666543 1222 3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcc-----C---cccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 006562 518 SAYTYLGLALSSIGEYKKAEEAHLKAIQL-----D---RNFLEAWGHLTQFYQDLANSEKALECLQQVL 578 (640)
Q Consensus 518 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~-----~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 578 (640)
..+.++|.+|..+|++++|+.++++++.+ . |........++.++..++.+.+|...|.++.
T Consensus 394 ~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~ 462 (490)
T 3n71_A 394 MAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMR 462 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555543 1 2223333445555555555555555555543
No 210
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.71 E-value=1e-07 Score=97.84 Aligned_cols=130 Identities=8% Similarity=0.004 Sum_probs=98.9
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH-
Q 006562 418 LIGRGTARAFQRELEAAISDFTEAIQS-----NPSA---GEAWKRRGQARAALGESVEAIQDLSKALEF-----EPNSA- 483 (640)
Q Consensus 418 ~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~~- 483 (640)
....+..+..+|+|++|+..++++++. .|++ ...+..+|.+|..+|+|++|+.++++++.+ .|+++
T Consensus 312 ~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~ 391 (490)
T 3n71_A 312 TLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQ 391 (490)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 444556677888899999988888864 3344 456778888888899999999998888865 45554
Q ss_pred --HHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 006562 484 --DILHERGIVNFKFKDFNAAVEDLSACVKL-----DKENK---SAYTYLGLALSSIGEYKKAEEAHLKAIQLD 547 (640)
Q Consensus 484 --~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 547 (640)
..+.++|.+|..+|++++|+.++++++.+ .|+++ .....++.++..++.+++|...|.++.+..
T Consensus 392 ~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 392 LGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888899999999999888864 35554 455678888888888888888888875443
No 211
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.58 E-value=5e-07 Score=69.34 Aligned_cols=71 Identities=14% Similarity=0.139 Sum_probs=47.3
Q ss_pred CcccHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 006562 377 KSISVDFRLSRGIAQVNEGK---YASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS 447 (640)
Q Consensus 377 ~~~~~~~~~~~a~~~~~~g~---~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 447 (640)
+|.+++.+..+|.+++..++ .++|...++++++.+|+++.+++.+|..++..|+|++|+.+++++++.+|.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 45566666666666655444 566666666666666666666666666666666666666666666666665
No 212
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.54 E-value=1.1e-06 Score=88.73 Aligned_cols=99 Identities=8% Similarity=0.029 Sum_probs=83.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHccc-----CchhH----HHhHHHHHHhhhcHHHHHHHHHHHHHcC-----CCchH--
Q 006562 41 IELAKLCSLRNWSKAIRILDSLLAQS-----YEIQD----ICNRAFCYSQLELHKHVIRDCDKALQLD-----PTLLQ-- 104 (640)
Q Consensus 41 ~~~~~~~~~~~y~~Ai~~y~~ai~~~-----~~~~~----~~~~A~~~~~~g~~~~Ai~~~~~al~~~-----P~~~~-- 104 (640)
..+.++..+|+|++|+..|++++++. +++.. +.++|.+|..+|+|++|+..++++|.+. |+++.
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a 371 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG 371 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence 34667889999999999999999763 44433 7899999999999999999999999864 55555
Q ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHHHhh-----ccCChHH
Q 006562 105 -AYILKGCAFSALGRKEEALSVWEKGYEH-----ALHQSAD 139 (640)
Q Consensus 105 -a~~~~g~~y~~~g~~~~A~~~~~~al~~-----~~~~~~~ 139 (640)
.++.+|.+|..+|++++|+..|++|+++ .|++|.-
T Consensus 372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 412 (429)
T 3qwp_A 372 VQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLI 412 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHH
Confidence 8999999999999999999999999876 5666543
No 213
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.53 E-value=6.5e-07 Score=68.68 Aligned_cols=72 Identities=14% Similarity=0.076 Sum_probs=49.0
Q ss_pred CCCCHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 006562 411 DPMYPEALIGRGTARAFQRE---LEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS 482 (640)
Q Consensus 411 ~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 482 (640)
+|+++..+..+|.+++..++ .++|...++++++.+|+++.+++.+|..++..|+|++|+.+++++++.+|.+
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 46666777777776665544 5667777777777777777777777777777777777777777777666653
No 214
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.50 E-value=1.6e-06 Score=71.87 Aligned_cols=87 Identities=14% Similarity=0.007 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHccC-c-ccHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 006562 502 AVEDLSACVKLDKENKSAYTYLGLALSSIG---EYKKAEEAHLKAIQLD-R-NFLEAWGHLTQFYQDLANSEKALECLQQ 576 (640)
Q Consensus 502 A~~~~~~al~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~a~~~~-~-~~~~~~~~la~~~~~~g~~~~A~~~~~~ 576 (640)
+.+.|.+.+..++.+..+.+.+|+++...+ +.++++..++..+..+ | ...++++++|..+++.|+|++|..++++
T Consensus 17 ~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~ 96 (152)
T 1pc2_A 17 FEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRG 96 (152)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 334444444444444444444444444444 3334444444444444 3 2344444444444444444444444444
Q ss_pred HHHhCCCChHHH
Q 006562 577 VLYIDKRFSKAY 588 (640)
Q Consensus 577 al~~~~~~~~~~ 588 (640)
+++.+|++..+.
T Consensus 97 lL~ieP~n~QA~ 108 (152)
T 1pc2_A 97 LLQTEPQNNQAK 108 (152)
T ss_dssp HHHHCTTCHHHH
T ss_pred HHhcCCCCHHHH
Confidence 444444444433
No 215
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.48 E-value=1.8e-06 Score=71.66 Aligned_cols=89 Identities=10% Similarity=0.033 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhC-C-CcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006562 399 SAISIFDQILKEDPMYPEALIGRGTARAFQR---ELEAAISDFTEAIQSN-P-SAGEAWKRRGQARAALGESVEAIQDLS 473 (640)
Q Consensus 399 ~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~-p-~~~~~~~~la~~~~~~~~~~~A~~~~~ 473 (640)
.+.+.|.+.+..++.+.++.+.+|.++...+ +.++++.+++.+++.+ | .+.++++.+|..+++.|+|++|..+++
T Consensus 16 ~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~ 95 (152)
T 1pc2_A 16 KFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVR 95 (152)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 3444455555555555666666666665555 4445666666666555 4 345555666666666666666666666
Q ss_pred HHHHhCCCCHHHHH
Q 006562 474 KALEFEPNSADILH 487 (640)
Q Consensus 474 ~al~~~p~~~~~~~ 487 (640)
++++..|++..+..
T Consensus 96 ~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 96 GLLQTEPQNNQAKE 109 (152)
T ss_dssp HHHHHCTTCHHHHH
T ss_pred HHHhcCCCCHHHHH
Confidence 66666665554443
No 216
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.48 E-value=8.7e-07 Score=89.36 Aligned_cols=85 Identities=9% Similarity=0.012 Sum_probs=74.1
Q ss_pred hcCCHHHHHHHHHHHHccc-----CchhH----HHhHHHHHHhhhcHHHHHHHHHHHHHcC-----CCchH---HHHHHH
Q 006562 48 SLRNWSKAIRILDSLLAQS-----YEIQD----ICNRAFCYSQLELHKHVIRDCDKALQLD-----PTLLQ---AYILKG 110 (640)
Q Consensus 48 ~~~~y~~Ai~~y~~ai~~~-----~~~~~----~~~~A~~~~~~g~~~~Ai~~~~~al~~~-----P~~~~---a~~~~g 110 (640)
..|+|++|+..|++++++. +++.. +.++|.+|..+|+|++|+..++++|.+. |+++. .+..+|
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 4689999999999998753 44433 7899999999999999999999999874 55555 899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhh
Q 006562 111 CAFSALGRKEEALSVWEKGYEH 132 (640)
Q Consensus 111 ~~y~~~g~~~~A~~~~~~al~~ 132 (640)
.+|..+|++++|+..|++|+++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHH
Confidence 9999999999999999999876
No 217
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.39 E-value=3.5e-06 Score=66.50 Aligned_cols=77 Identities=16% Similarity=0.038 Sum_probs=52.9
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHH
Q 006562 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKED-------PMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAW 452 (640)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 452 (640)
++.-++.+|..++..|+|..|+.+|+++++.. +..+.++..+|.+++..|+++.|+.+++++++..|++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 45666777777777777777777777777642 23456667777777777777777777777777777766665
Q ss_pred HHHH
Q 006562 453 KRRG 456 (640)
Q Consensus 453 ~~la 456 (640)
..++
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 5554
No 218
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.34 E-value=4.5e-06 Score=65.85 Aligned_cols=73 Identities=14% Similarity=-0.056 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-------CCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHH
Q 006562 554 WGHLTQFYQDLANSEKALECLQQVLYID-------KRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRA 626 (640)
Q Consensus 554 ~~~la~~~~~~g~~~~A~~~~~~al~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 626 (640)
.+.+|..++..|+|..|+..|+.+++.. +..+.++..+|.++.++|+++.|+.++++++++.|++..++.+++
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 3444444444444444444444444431 122344555555555555555555555555555555554444443
No 219
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.21 E-value=1.1e-05 Score=81.53 Aligned_cols=87 Identities=8% Similarity=-0.080 Sum_probs=43.3
Q ss_pred HHhcCCHHHHHHHHHHHHHhC-----CCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHcc--------CcccHHHHHH
Q 006562 493 NFKFKDFNAAVEDLSACVKLD-----KEN---KSAYTYLGLALSSIGEYKKAEEAHLKAIQL--------DRNFLEAWGH 556 (640)
Q Consensus 493 ~~~~~~~~~A~~~~~~al~~~-----~~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--------~~~~~~~~~~ 556 (640)
+..+|++++|+..++++++.. |++ ...+.++|.+|..+|+|++|+.++++++.. .|.....+++
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 344556666666666665431 222 234445555555555555555555555543 1222344445
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHH
Q 006562 557 LTQFYQDLANSEKALECLQQVLY 579 (640)
Q Consensus 557 la~~~~~~g~~~~A~~~~~~al~ 579 (640)
+|.+|..+|++++|+.+++++++
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Confidence 55555555555555555555543
No 220
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.20 E-value=8.7e-06 Score=82.08 Aligned_cols=51 Identities=14% Similarity=0.107 Sum_probs=25.1
Q ss_pred HcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006562 461 ALGESVEAIQDLSKALEF-----EPNSA---DILHERGIVNFKFKDFNAAVEDLSACVK 511 (640)
Q Consensus 461 ~~~~~~~A~~~~~~al~~-----~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~ 511 (640)
..|+|++|+..+++++.+ .|+++ .++.++|.+|..+|+|++|+.++++++.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~ 368 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIK 368 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 345555666555555543 23332 2344455555555555555555555443
No 221
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.13 E-value=0.00033 Score=72.43 Aligned_cols=162 Identities=10% Similarity=0.039 Sum_probs=95.6
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHhC-CCCHHHH
Q 006562 418 LIGRGTARAFQRELEAAISDFTEAIQSN-PSAGEAWKRRGQARAALG---------ESVEAIQDLSKALEFE-PNSADIL 486 (640)
Q Consensus 418 ~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~---------~~~~A~~~~~~al~~~-p~~~~~~ 486 (640)
+..+-..+.+.|+.++|+..|++..+.. +.+...|..+-.++...+ ..+.|...|++..... +-+...+
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 3444456667777777777777776543 123444544444444332 2566666666665542 1245566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC-cccHHHHHHHHHHHHHh
Q 006562 487 HERGIVNFKFKDFNAAVEDLSACVKLD-KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD-RNFLEAWGHLTQFYQDL 564 (640)
Q Consensus 487 ~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~ 564 (640)
..+...+.+.|++++|...+++..... .-+...|..+-..|.+.|+.++|...|++..... .-+...|..+...+.+.
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT 188 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence 666666677777777777776665542 2245556666666666677777766666665442 11355566666666666
Q ss_pred cCHHHHHHHHHHHHH
Q 006562 565 ANSEKALECLQQVLY 579 (640)
Q Consensus 565 g~~~~A~~~~~~al~ 579 (640)
|+.++|..++++.-+
T Consensus 189 g~~d~A~~ll~~Mr~ 203 (501)
T 4g26_A 189 KNADKVYKTLQRLRD 203 (501)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 666666666666554
No 222
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.10 E-value=0.00045 Score=71.36 Aligned_cols=163 Identities=10% Similarity=-0.000 Sum_probs=131.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHhC-CCcHHHH
Q 006562 384 RLSRGIAQVNEGKYASAISIFDQILKED-PMYPEALIGRGTARAFQ---------RELEAAISDFTEAIQSN-PSAGEAW 452 (640)
Q Consensus 384 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~-p~~~~~~ 452 (640)
+...-..+.+.|++++|+.+|+++.+.. +-+...|..+-.++... +..+.|...|++..... +.+...|
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 3344567788999999999999998753 22466666666666543 34788999999987754 2367788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHc
Q 006562 453 KRRGQARAALGESVEAIQDLSKALEFE-PNSADILHERGIVNFKFKDFNAAVEDLSACVKLD-KENKSAYTYLGLALSSI 530 (640)
Q Consensus 453 ~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~ 530 (640)
..+...|...|++++|..+|++..... .-+...|..+...|.+.|+.++|.+.+++..+.. .-+...|..+...+.+.
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT 188 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence 889999999999999999999988763 2367788999999999999999999999998764 23577888999999999
Q ss_pred CCHHHHHHHHHHHHcc
Q 006562 531 GEYKKAEEAHLKAIQL 546 (640)
Q Consensus 531 g~~~~A~~~~~~a~~~ 546 (640)
|+.++|..++++..+.
T Consensus 189 g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 189 KNADKVYKTLQRLRDL 204 (501)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999998654
No 223
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=98.00 E-value=0.00017 Score=58.59 Aligned_cols=107 Identities=16% Similarity=0.070 Sum_probs=61.5
Q ss_pred CCCcHHHHHHHHHHHHHcCCH------HHHHHHHHHHHccCcc--------cHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 006562 513 DKENKSAYTYLGLALSSIGEY------KKAEEAHLKAIQLDRN--------FLEAWGHLTQFYQDLANSEKALECLQQVL 578 (640)
Q Consensus 513 ~~~~~~~~~~la~~~~~~g~~------~~A~~~~~~a~~~~~~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al 578 (640)
.|++++.|..........|+. +.-+..|++++..-|. ....|...|.. ...++.++|...|+.++
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMAR 87 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHH
Confidence 344455555444444444544 4444555555544332 13344445533 34466777777777776
Q ss_pred HhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHH
Q 006562 579 YIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE 620 (640)
Q Consensus 579 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 620 (640)
......+.+|...|....++|+...|.+.+.+++...|...+
T Consensus 88 ~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 88 ANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp HHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred HHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 666666666777777777777777777777777776666443
No 224
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.97 E-value=0.00016 Score=57.49 Aligned_cols=89 Identities=12% Similarity=-0.030 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH---HHHHHHHHHccC-c-ccHHHHHHHHHHHHHhcCHHHHHHHHH
Q 006562 501 AAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKK---AEEAHLKAIQLD-R-NFLEAWGHLTQFYQDLANSEKALECLQ 575 (640)
Q Consensus 501 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~---A~~~~~~a~~~~-~-~~~~~~~~la~~~~~~g~~~~A~~~~~ 575 (640)
.+...|.+....++.+..+.+.+|+++....+... ++..++..+... | ...+.++.+|..+++.|+|++|..+++
T Consensus 19 ~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~ 98 (126)
T 1nzn_A 19 KFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVR 98 (126)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 34444444444444455555555555555444433 555555555544 3 234455555555555555555555555
Q ss_pred HHHHhCCCChHHHH
Q 006562 576 QVLYIDKRFSKAYH 589 (640)
Q Consensus 576 ~al~~~~~~~~~~~ 589 (640)
.+++..|++..+..
T Consensus 99 ~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 99 GLLQTEPQNNQAKE 112 (126)
T ss_dssp HHHHHCTTCHHHHH
T ss_pred HHHHhCCCCHHHHH
Confidence 55555555544443
No 225
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.84 E-value=0.00023 Score=56.68 Aligned_cols=85 Identities=12% Similarity=0.023 Sum_probs=38.0
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHH---HHHHHHHHHHhC-C-CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006562 401 ISIFDQILKEDPMYPEALIGRGTARAFQRELEA---AISDFTEAIQSN-P-SAGEAWKRRGQARAALGESVEAIQDLSKA 475 (640)
Q Consensus 401 ~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~-p-~~~~~~~~la~~~~~~~~~~~A~~~~~~a 475 (640)
...|.+....++....+.+.+|.++....+... ++.+++..+... | ..-+.++.+|..+++.|+|++|..+++.+
T Consensus 21 ~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~l 100 (126)
T 1nzn_A 21 EKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGL 100 (126)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 333333333344444444444444444433333 444444444433 2 23344444444444444444444444444
Q ss_pred HHhCCCCHHH
Q 006562 476 LEFEPNSADI 485 (640)
Q Consensus 476 l~~~p~~~~~ 485 (640)
++..|.+..+
T Consensus 101 L~~eP~n~QA 110 (126)
T 1nzn_A 101 LQTEPQNNQA 110 (126)
T ss_dssp HHHCTTCHHH
T ss_pred HHhCCCCHHH
Confidence 4444444443
No 226
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.83 E-value=0.00058 Score=55.47 Aligned_cols=107 Identities=14% Similarity=-0.020 Sum_probs=65.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHhCCCc--------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006562 479 EPNSADILHERGIVNFKFKDF------NAAVEDLSACVKLDKEN--------KSAYTYLGLALSSIGEYKKAEEAHLKAI 544 (640)
Q Consensus 479 ~p~~~~~~~~la~~~~~~~~~------~~A~~~~~~al~~~~~~--------~~~~~~la~~~~~~g~~~~A~~~~~~a~ 544 (640)
.|++++.|..........|+. ++-+..|++++..-|.. ...|...|.. ...++.++|...|+.++
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMAR 87 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHH
Confidence 455555555555555555555 55555555555544332 2334444433 34467777777777776
Q ss_pred ccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChH
Q 006562 545 QLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSK 586 (640)
Q Consensus 545 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 586 (640)
......+.+|...|....++|+...|...+.+++...|...+
T Consensus 88 ~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 88 ANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp HHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred HHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 666666777777777777777777777777777777765433
No 227
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.62 E-value=0.00043 Score=57.65 Aligned_cols=88 Identities=11% Similarity=0.080 Sum_probs=72.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHccc-Cchh---------HHHhHHHHHHhhhcHHHHHHHHHHHHHcC---CC-------
Q 006562 42 ELAKLCSLRNWSKAIRILDSLLAQS-YEIQ---------DICNRAFCYSQLELHKHVIRDCDKALQLD---PT------- 101 (640)
Q Consensus 42 ~~~~~~~~~~y~~Ai~~y~~ai~~~-~~~~---------~~~~~A~~~~~~g~~~~Ai~~~~~al~~~---P~------- 101 (640)
....++..|.|+.|+-..+.++... .++. .++..|.+++..|+|..|...|++||+.. |+
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~ 105 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPS 105 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 4557799999999999999988775 2222 36789999999999999999999987653 11
Q ss_pred ---------------chHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006562 102 ---------------LLQAYILKGCAFSALGRKEEALSVWEKG 129 (640)
Q Consensus 102 ---------------~~~a~~~~g~~y~~~g~~~~A~~~~~~a 129 (640)
..+..|+++.+|.+++++.+|+..++..
T Consensus 106 ~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 106 TGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp -----------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred ccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 1368899999999999999999887765
No 228
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.42 E-value=0.001 Score=55.45 Aligned_cols=133 Identities=12% Similarity=0.079 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhC---CCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCcH
Q 006562 382 DFRLSRGIAQVNEGKYASAISIFDQILKED---PMY------PEALIGRGTARAFQRELEAAISDFTEAIQSN---PSAG 449 (640)
Q Consensus 382 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~---~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~~ 449 (640)
..++.....++..|.|+.|+-....++... |+. ..++..+|..++..|+|..|...|+++++.. +...
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 345667788889999999999988876653 331 3478899999999999999999999997643 2222
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 006562 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLAL 527 (640)
Q Consensus 450 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 527 (640)
.....++. ...+. .... .+.+.++.+.++.|+...+++.+|+..++..-.. ...+.+...+|..|
T Consensus 101 s~~~~~~~----~ss~p-------~s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k-~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 101 KVRPSTGN----SASTP-------QSQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR-QRTPKINMLLANLY 165 (167)
T ss_dssp ---------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG-GCCHHHHHHHHHHC
T ss_pred Cccccccc----cCCCc-------cccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch-hcCHHHHHHHHHHh
Confidence 11111110 00000 0011 1234567778888888888888888877653222 24566666666654
No 229
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.23 E-value=0.0046 Score=49.29 Aligned_cols=83 Identities=11% Similarity=0.047 Sum_probs=67.0
Q ss_pred cCcccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHH
Q 006562 376 SKSISVDFRLSRGIAQVNEGKY---ASAISIFDQILKEDPM-YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEA 451 (640)
Q Consensus 376 ~~~~~~~~~~~~a~~~~~~g~~---~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 451 (640)
....++...+..|+++....+. ..++.+++.+++.+|. .-+.++.+|..+++.|+|+.|..+.+.+++..|++..+
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 3455678888889888887644 5789999999988884 47889999999999999999999999999999998776
Q ss_pred HHHHHHH
Q 006562 452 WKRRGQA 458 (640)
Q Consensus 452 ~~~la~~ 458 (640)
......+
T Consensus 115 ~~Lk~~I 121 (134)
T 3o48_A 115 GALKSMV 121 (134)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6554433
No 230
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.06 E-value=0.018 Score=46.58 Aligned_cols=80 Identities=8% Similarity=-0.027 Sum_probs=53.5
Q ss_pred ccHHHHHHHHHHHHHhcCH---HHHHHHHHHHHHhCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHH
Q 006562 549 NFLEAWGHLTQFYQDLANS---EKALECLQQVLYIDKR-FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYL 624 (640)
Q Consensus 549 ~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 624 (640)
-++.+.+++|+++....+. .+++.+++..+...|. .-+.++.+|..++++|+|.+|+.+.+..++..|+|..+...
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~L 116 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 116 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 3466677777777665443 4567777777776663 45567777777777777777777777777777777665554
Q ss_pred HHHH
Q 006562 625 RASC 628 (640)
Q Consensus 625 la~~ 628 (640)
...+
T Consensus 117 k~~I 120 (144)
T 1y8m_A 117 KSMV 120 (144)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 231
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.03 E-value=0.013 Score=46.78 Aligned_cols=75 Identities=8% Similarity=-0.017 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHhcCH---HHHHHHHHHHHHhCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHH
Q 006562 551 LEAWGHLTQFYQDLANS---EKALECLQQVLYIDKR-FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR 625 (640)
Q Consensus 551 ~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 625 (640)
+.+.+++|+++....+. .+++.+++..+...|. .-+.++.+|..+.+.|+|++|+.+.+.+++..|+|..+....
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk 118 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 118 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 45555555555554332 3455566555555552 345556666666666666666666666666666665554433
No 232
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.97 E-value=0.035 Score=44.91 Aligned_cols=74 Identities=12% Similarity=0.073 Sum_probs=35.0
Q ss_pred cccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHH
Q 006562 378 SISVDFRLSRGIAQVNEGKY---ASAISIFDQILKEDPM-YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEA 451 (640)
Q Consensus 378 ~~~~~~~~~~a~~~~~~g~~---~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 451 (640)
..+++..|..|+++....+. .+++.+++..+...|. .-+.++.+|..+++.|+|.+|..+.+.+++..|++..+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 34444455555555444322 2444455555544442 23444455555555555555555555555555544433
No 233
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=96.65 E-value=0.19 Score=41.53 Aligned_cols=182 Identities=15% Similarity=0.052 Sum_probs=116.0
Q ss_pred ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006562 428 QRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLS 507 (640)
Q Consensus 428 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 507 (640)
-.+|+.++-.-.- +.|..++....++.+++..|.|..++-.+.. -+...+.+.-+.||....++..|+..++
T Consensus 15 Y~dYdt~~fLsa~---L~~~~~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le 86 (242)
T 3kae_A 15 YRDYETAIFLAAC---LLPCKPEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLE 86 (242)
T ss_dssp TTCHHHHHHHHHH---HC----CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccccHHHHHHHH---HccCChHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567666544333 2344456666788889999999998877643 3446677788999999999999999999
Q ss_pred HHHHh-----------------CCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHH---------
Q 006562 508 ACVKL-----------------DKENK-SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQF--------- 560 (640)
Q Consensus 508 ~al~~-----------------~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~--------- 560 (640)
..+.- +|.+. -.+..+|.++...|+-++|+.++.......|-.+.+-..+-.-
T Consensus 87 ~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnliyeN~vp~~~d~~ 166 (242)
T 3kae_A 87 SILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENLLLENKVPQKRDKE 166 (242)
T ss_dssp HHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHTTCCCCCC---
T ss_pred HHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHHHhhcCCCcccchH
Confidence 99832 23333 3455679999999999999999999998887654433211000
Q ss_pred -HHHhcC-------HHHHH--------HHHHHHHHhCCCChH-HHHHHHHHHHhcCCHHHHHHHHHHhhccCCC
Q 006562 561 -YQDLAN-------SEKAL--------ECLQQVLYIDKRFSK-AYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS 617 (640)
Q Consensus 561 -~~~~g~-------~~~A~--------~~~~~al~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 617 (640)
-...|+ +.... ...++-.+.-|.... .....+..++.+|-.++....|....+.+|.
T Consensus 167 ~i~~~~~~~i~~~y~~d~~~lHe~~s~~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP~ 240 (242)
T 3kae_A 167 NVRQTGRRGIEEEYVSDSIEFHESLSPSLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKDPM 240 (242)
T ss_dssp --------CHHHHHHHHHHHHHHHCCHHHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHhhhhccchhhhhhhHHHHHHhccHHHHHHHHHhCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcCCC
Confidence 000010 11111 122222333344332 2334567788899999999999998888885
No 234
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.47 E-value=0.74 Score=45.09 Aligned_cols=227 Identities=10% Similarity=-0.077 Sum_probs=136.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHH-----HHHHHHHHH-ccCHHHHHHHHHHHHHhCCCcH----H-
Q 006562 382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEAL-----IGRGTARAF-QRELEAAISDFTEAIQSNPSAG----E- 450 (640)
Q Consensus 382 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~-----~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~----~- 450 (640)
.+.+.+|..|...|++++-.+++......-+.-+.+. ..+-..+.. .+..+.-++.+..+++...+.- .
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999998888876654333322221 122222221 2444555555555554322211 1
Q ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---CCcH---
Q 006562 451 -AWKRRGQARAALGESVEAIQDLSKALEFEPN--S----ADILHERGIVNFKFKDFNAAVEDLSACVKLD---KENK--- 517 (640)
Q Consensus 451 -~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---~~~~--- 517 (640)
.-..+|..|+..|+|.+|...+.+..+.-.. + .+++..-..+|...+++.++...+.++.... +.+|
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 2337899999999999999999888764322 1 4567777888999999999999999887553 1233
Q ss_pred -HHHHHHHHHHH-HcCCHHHHHHHHHHHHccCcc-----cHHHHHHHHHHHHHhcCHHHHHHHHH-HHHHhCCCChH--H
Q 006562 518 -SAYTYLGLALS-SIGEYKKAEEAHLKAIQLDRN-----FLEAWGHLTQFYQDLANSEKALECLQ-QVLYIDKRFSK--A 587 (640)
Q Consensus 518 -~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~-~al~~~~~~~~--~ 587 (640)
.....-|..+. ..++|..|...|-+++..... ...+..+++.+-...++..+-..... +..... ..+. .
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r~el~~~l~~~~~~~~-~~pei~~ 258 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQSDDVNQLVSGKLAITY-SGRDIDA 258 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHSHHHHTT-CSHHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCHHHHHHHhcccccccc-CCccHHH
Confidence 34555688888 899999999999988754322 12344455555555555333222221 111111 2333 3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 006562 588 YHLRGLLLHGLGQHKKAIKDLSS 610 (640)
Q Consensus 588 ~~~la~~~~~~g~~~~A~~~~~~ 610 (640)
+..+..+ +..+++.+-...++.
T Consensus 259 l~~L~~a-~~~~dl~~f~~iL~~ 280 (394)
T 3txn_A 259 MKSVAEA-SHKRSLADFQAALKE 280 (394)
T ss_dssp HHHHHHH-HHTTCHHHHHHHHHH
T ss_pred HHHHHHH-HHhCCHHHHHHHHHH
Confidence 3344443 455677555555544
No 235
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=96.33 E-value=0.36 Score=39.91 Aligned_cols=99 Identities=13% Similarity=0.111 Sum_probs=70.3
Q ss_pred ccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----C---------
Q 006562 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS----N--------- 445 (640)
Q Consensus 379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~--------- 445 (640)
..++..+.++..++-.|.|..|+-++.. -+...+.+..+.||....+|..|+..++..+.- +
T Consensus 31 ~~~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ 105 (242)
T 3kae_A 31 CKPEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQE 105 (242)
T ss_dssp ---CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHT
T ss_pred CChHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccce
Confidence 3346667778888889999988876642 345677788889999999999999999988832 2
Q ss_pred ----CCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 006562 446 ----PSAGE-AWKRRGQARAALGESVEAIQDLSKALEFEPNS 482 (640)
Q Consensus 446 ----p~~~~-~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 482 (640)
|.+.+ .+..+|.++.+.|+.++|+.++.......|-.
T Consensus 106 ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf 147 (242)
T 3kae_A 106 MFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLF 147 (242)
T ss_dssp TSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred eeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCcccc
Confidence 22222 44557777777888888888887777776643
No 236
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.29 E-value=0.061 Score=57.47 Aligned_cols=114 Identities=14% Similarity=0.094 Sum_probs=65.3
Q ss_pred cCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--h-cCCHHHHHHHHHHHHHh--------CCCc----------HHH
Q 006562 462 LGE-SVEAIQDLSKALEFEPNSADILHERGIVNF--K-FKDFNAAVEDLSACVKL--------DKEN----------KSA 519 (640)
Q Consensus 462 ~~~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~--~-~~~~~~A~~~~~~al~~--------~~~~----------~~~ 519 (640)
.++ ++.|+..+++....+|.... ++..+.+.. . ..+--+|+..+.+.++. .+.+ ...
T Consensus 261 t~~~~~~a~~~le~L~~~~p~~~~-~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~L 339 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKKDPIHDI-YYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDL 339 (754)
T ss_dssp CGGGHHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhhCCchhH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHH
Confidence 444 57788888888888775532 222222221 1 22345677777766642 1222 123
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 006562 520 YTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQ 576 (640)
Q Consensus 520 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 576 (640)
+...+..+...|+++-|+.+.++++...|.....|..|+.+|..+|+++.|+-.++.
T Consensus 340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNS 396 (754)
T 4gns_B 340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINS 396 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 333455555666666666666666666666666666666666666666666655443
No 237
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.28 E-value=0.13 Score=50.34 Aligned_cols=187 Identities=10% Similarity=-0.048 Sum_probs=119.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHH-----HHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHH----
Q 006562 415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEA-----WKRRGQARAA-LGESVEAIQDLSKALEFEPNSAD---- 484 (640)
Q Consensus 415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~-----~~~la~~~~~-~~~~~~A~~~~~~al~~~p~~~~---- 484 (640)
..+.+.+|..|...|++++-.+++.......+.-+.+ ...+-..+.. -+..+.-++.+..+++...+.-.
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr 98 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999888888765444333222 2222222222 24455556666666655332211
Q ss_pred --HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--c----HHHHHHHHHHHHHcCCHHHHHHHHHHHHccC------cc-
Q 006562 485 --ILHERGIVNFKFKDFNAAVEDLSACVKLDKE--N----KSAYTYLGLALSSIGEYKKAEEAHLKAIQLD------RN- 549 (640)
Q Consensus 485 --~~~~la~~~~~~~~~~~A~~~~~~al~~~~~--~----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~------~~- 549 (640)
.-..+|.+|+..|+|.+|.+.+.+....... + .+++.....+|...+++.++...+.++.... |.
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 2236788999999999998888888764322 1 3556667888888999999998888886542 11
Q ss_pred cHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCC--h---HHHHHHHHHHHhcCCH
Q 006562 550 FLEAWGHLTQFYQ-DLANSEKALECLQQVLYIDKRF--S---KAYHLRGLLLHGLGQH 601 (640)
Q Consensus 550 ~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~--~---~~~~~la~~~~~~g~~ 601 (640)
.+.....-|..+. ..++|..|...|-.++...... + .+...++.+-.-.++.
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r 236 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQS 236 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCH
Confidence 1334456677788 7899999998888887543322 1 2334444455555554
No 238
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.20 E-value=0.33 Score=53.51 Aligned_cols=100 Identities=14% Similarity=0.066 Sum_probs=65.6
Q ss_pred HHHHHcCChHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Q 006562 389 IAQVNEGKYASAIS-IFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVE 467 (640)
Q Consensus 389 ~~~~~~g~~~~A~~-~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~ 467 (640)
......+++++|.. ++.. -|+ ......++..+...|.++.|+...+ ++... .......|++++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~----i~~-~~~~~~~~~~l~~~~~~~~a~~~~~--------~~~~~---f~~~l~~~~~~~ 670 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPN----VEG-KDSLTKIARFLEGQEYYEEALNISP--------DQDQK---FELALKVGQLTL 670 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGG----CCC-HHHHHHHHHHHHHTTCHHHHHHHCC--------CHHHH---HHHHHHHTCHHH
T ss_pred hHHHHhCCHHHHHHHHHhc----CCc-hHHHHHHHHHHHhCCChHHheecCC--------Ccchh---eehhhhcCCHHH
Confidence 34456888888876 4411 110 1222556666777788887776542 22222 234567888888
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006562 468 AIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509 (640)
Q Consensus 468 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 509 (640)
|.+..+. .++...|..+|..+...++++.|..+|.++
T Consensus 671 A~~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 671 ARDLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 8877532 356788889999999999999999888875
No 239
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.16 E-value=0.03 Score=59.77 Aligned_cols=115 Identities=11% Similarity=0.112 Sum_probs=86.7
Q ss_pred cCC-hHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---HccCHHHHHHHHHHHHHh--------CCCc----------HHH
Q 006562 394 EGK-YASAISIFDQILKEDPMYPEALIGRGTARA---FQRELEAAISDFTEAIQS--------NPSA----------GEA 451 (640)
Q Consensus 394 ~g~-~~~A~~~~~~~l~~~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~--------~p~~----------~~~ 451 (640)
.++ ++.|+.++++....+|.... ++..+.+.. ...+--+|+..+.+.++. .+.+ ...
T Consensus 261 t~~~~~~a~~~le~L~~~~p~~~~-~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~L 339 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKKDPIHDI-YYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDL 339 (754)
T ss_dssp CGGGHHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhhCCchhH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHH
Confidence 344 58899999999999987543 333333222 123445677777777642 2222 235
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006562 452 WKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509 (640)
Q Consensus 452 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 509 (640)
+...+..+...|+++-|+.+.++++...|..-..|+.|+.+|..+|+|+.|+-.++.+
T Consensus 340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 5667888889999999999999999999999999999999999999999999888776
No 240
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.77 E-value=0.52 Score=51.89 Aligned_cols=180 Identities=16% Similarity=0.013 Sum_probs=111.0
Q ss_pred HHHHccCHHHHHH-HHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Q 006562 424 ARAFQRELEAAIS-DFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAA 502 (640)
Q Consensus 424 ~~~~~g~~~~A~~-~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A 502 (640)
.....+++++|.. .+.. -|+ ......+...+...|.++.|+...+ ++... .......|+++.|
T Consensus 608 ~~~~~~~~~~a~~~~l~~----i~~-~~~~~~~~~~l~~~~~~~~a~~~~~--------~~~~~---f~~~l~~~~~~~A 671 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPN----VEG-KDSLTKIARFLEGQEYYEEALNISP--------DQDQK---FELALKVGQLTLA 671 (814)
T ss_dssp HHHHTTCHHHHHHHTGGG----CCC-HHHHHHHHHHHHHTTCHHHHHHHCC--------CHHHH---HHHHHHHTCHHHH
T ss_pred HHHHhCCHHHHHHHHHhc----CCc-hHHHHHHHHHHHhCCChHHheecCC--------Ccchh---eehhhhcCCHHHH
Confidence 3346788888876 4411 110 1222566777888899888886552 33222 3445788999999
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC--------cccHHHHHHHHHHHHHhcCHHHHHHHH
Q 006562 503 VEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD--------RNFLEAWGHLTQFYQDLANSEKALECL 574 (640)
Q Consensus 503 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~ 574 (640)
.+..+. .+++..|..+|..+...++++.|+.+|.++-... ..+...+..++......|++..|...|
T Consensus 672 ~~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~ 746 (814)
T 3mkq_A 672 RDLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAY 746 (814)
T ss_dssp HHHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHH
Confidence 988643 4678999999999999999999999999864321 223344445555555556665555554
Q ss_pred HHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCC---HHHHHHHHHHHHHcCCc
Q 006562 575 QQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN---IECLYLRASCYHAIGEY 635 (640)
Q Consensus 575 ~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~ 635 (640)
.+. .+ ......+|...+++++|+..-++ ..|.. +.+....+.-+...|+.
T Consensus 747 ~~~-----g~---~~~a~~~~~~~~~~~~A~~lA~~---~~~~~~~i~~~~~~~~~~L~~~~~~ 799 (814)
T 3mkq_A 747 WIA-----GD---IQGAKDLLIKSQRFSEAAFLGST---YGLGDNEVNDIVTKWKENLILNGKN 799 (814)
T ss_dssp HHH-----TC---HHHHHHHHHHTTCHHHHHHHHHH---TTCCHHHHHHHHHHHHHHHHTTTCH
T ss_pred HHc-----CC---HHHHHHHHHHcCChHHHHHHHHH---hCCChHHHHHHHHHHHHHHHhccch
Confidence 332 11 11223445666666666665543 44544 25555566666677754
No 241
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.39 E-value=0.4 Score=40.71 Aligned_cols=107 Identities=8% Similarity=-0.066 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 006562 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460 (640)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 460 (640)
++..+.+ .+..|+++.|.++.+.. ++...|..+|......|+++-|..+|.++-. . -.+..+|.
T Consensus 8 ~~~rF~L---AL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~---~~L~~Ly~ 71 (177)
T 3mkq_B 8 PHIRFDL---ALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS-----F---DKLSFLYL 71 (177)
T ss_dssp HHHHHHH---HHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----H---HHHHHHHH
T ss_pred hHHHHHH---HHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----H---HHHHHHHH
Confidence 4444443 35678888888776654 4577788888888888888888888777522 1 23444555
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006562 461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSA 508 (640)
Q Consensus 461 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 508 (640)
..|+.+.-....+.+..... +.....+++..|+++++++.|.+
T Consensus 72 ~tg~~e~L~kla~iA~~~g~-----~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 72 VTGDVNKLSKMQNIAQTRED-----FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHCcc-----HHHHHHHHHHcCCHHHHHHHHHH
Confidence 56666554444433333221 12223445566677766666654
No 242
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=95.38 E-value=1.4 Score=46.26 Aligned_cols=123 Identities=11% Similarity=-0.010 Sum_probs=80.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCcHHH----HHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhc
Q 006562 490 GIVNFKFKDFNAAVEDLSACVKLDKENKSA----YTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565 (640)
Q Consensus 490 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~----~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g 565 (640)
+.......+.+.|...+.......+-+... +..++.-....+...++...+.+......++ .....++......|
T Consensus 221 ~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~r~Alr~~ 299 (618)
T 1qsa_A 221 AFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQST-SLIERRVRMALGTG 299 (618)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCH-HHHHHHHHHHHHHT
T ss_pred HHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCCh-HHHHHHHHHHHHCC
Confidence 333344557788888887765543333222 2223333333443556777777765544433 33444444556779
Q ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 006562 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLG 613 (640)
Q Consensus 566 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 613 (640)
+++.|..++...-......+...+.+|.++...|+.++|..+|+++..
T Consensus 300 d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 300 DRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp CHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 999999999876554445677889999999999999999999999876
No 243
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.36 E-value=2 Score=43.19 Aligned_cols=185 Identities=12% Similarity=-0.014 Sum_probs=104.3
Q ss_pred cCChHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH---H-HcC
Q 006562 394 EGKYASAISIFDQILKE------DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR---A-ALG 463 (640)
Q Consensus 394 ~g~~~~A~~~~~~~l~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~---~-~~~ 463 (640)
.|+++.|++.+....+. .+....+...+..++...|+++...+.+.-..+.......+...+.... . ...
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence 47888998877554432 2334677888888889999998887776655444333322222221111 1 111
Q ss_pred CHHHHHHHHHHHHHhC----CC-------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCc----HHHHHHHHHH
Q 006562 464 ESVEAIQDLSKALEFE----PN-------SADILHERGIVNFKFKDFNAAVEDLSACVKLD--KEN----KSAYTYLGLA 526 (640)
Q Consensus 464 ~~~~A~~~~~~al~~~----p~-------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--~~~----~~~~~~la~~ 526 (640)
..+. ......+..- .+ .......++.++...|++.+|...+.....-. ..+ ...+.....+
T Consensus 109 ~~d~--~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl 186 (445)
T 4b4t_P 109 SLDL--NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL 186 (445)
T ss_dssp TTHH--HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred chhH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 1111 1111111111 10 12344567777777888888877777765321 111 3556666777
Q ss_pred HHHcCCHHHHHHHHHHHHcc---Cccc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 006562 527 LSSIGEYKKAEEAHLKAIQL---DRNF----LEAWGHLTQFYQDLANSEKALECLQQVLYI 580 (640)
Q Consensus 527 ~~~~g~~~~A~~~~~~a~~~---~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 580 (640)
+...+++..|...+.++... .+.. ...+...|.++...++|.+|-.+|..++..
T Consensus 187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 77777777777777765321 1111 334556677777777777777777666543
No 244
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=95.13 E-value=3.8 Score=42.90 Aligned_cols=259 Identities=10% Similarity=-0.077 Sum_probs=151.5
Q ss_pred CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC------------------CHHHHHHHHHHHHHccCHHHHHHHH
Q 006562 377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPM------------------YPEALIGRGTARAFQRELEAAISDF 438 (640)
Q Consensus 377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~------------------~~~~~~~la~~~~~~g~~~~A~~~~ 438 (640)
.|.+.......+......|+-.+|......+...... .+.-+.......+..|+...|....
T Consensus 98 ~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~ 177 (618)
T 1qsa_A 98 KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLA 177 (618)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4566666666666677777776666666555433221 1222333344445555555554443
Q ss_pred HH-------------HHHhCCCcHH-------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHH
Q 006562 439 TE-------------AIQSNPSAGE-------------AWKRRGQARAALGESVEAIQDLSKALEFEPNSAD----ILHE 488 (640)
Q Consensus 439 ~~-------------al~~~p~~~~-------------~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~ 488 (640)
.. ++..+|.... .....+.......+.+.|...+.......+-+.. .+..
T Consensus 178 ~~l~~~~~~~a~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 257 (618)
T 1qsa_A 178 GQMPADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDI 257 (618)
T ss_dssp HTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHhChHhHHHHHhccCCChhhHHHHHHHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHH
Confidence 32 1222333221 1122344444455778888888777654433322 2223
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHH
Q 006562 489 RGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSE 568 (640)
Q Consensus 489 la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~ 568 (640)
++.-+...+...++...+.+......++. ....++......|+++.|...|...-..........+.+|+.+...|+.+
T Consensus 258 ia~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~ 336 (618)
T 1qsa_A 258 VAWRLMGNDVTDEQAKWRDDAIMRSQSTS-LIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREA 336 (618)
T ss_dssp HHHTSCSTTCCHHHHHHHHHHHHTCCCHH-HHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCChHHHHHHHhccccCCChH-HHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHH
Confidence 33333444535677777777665444333 34444445567799999999998766544456788899999999999999
Q ss_pred HHHHHHHHHHHhC--------------------C--C--Ch----HHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHH
Q 006562 569 KALECLQQVLYID--------------------K--R--FS----KAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE 620 (640)
Q Consensus 569 ~A~~~~~~al~~~--------------------~--~--~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 620 (640)
+|..+|.++.... + . .. ......+..+...|....|...+....... +..
T Consensus 337 ~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~--~~~ 414 (618)
T 1qsa_A 337 EAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKT 414 (618)
T ss_dssp HHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHH
T ss_pred HHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcC--CHH
Confidence 9999988875321 0 0 00 023445667888899999988888777542 244
Q ss_pred HHHHHHHHHHHcCCcccc
Q 006562 621 CLYLRASCYHAIGEYREA 638 (640)
Q Consensus 621 ~~~~la~~~~~~g~~~~A 638 (640)
-...++.+....|.+..+
T Consensus 415 ~~~~la~~a~~~~~~~~~ 432 (618)
T 1qsa_A 415 EQAQLARYAFNNQWWDLS 432 (618)
T ss_dssp HHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHCCChHHH
Confidence 445667766666666544
No 245
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.99 E-value=0.97 Score=38.33 Aligned_cols=109 Identities=9% Similarity=-0.042 Sum_probs=70.5
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 006562 448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLAL 527 (640)
Q Consensus 448 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 527 (640)
+++..+.++ ...|+++.|.+..+.. ++...|..+|......|+++-|..+|.++- + +-.+..+|
T Consensus 7 D~~~rF~LA---L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~-----D---~~~L~~Ly 70 (177)
T 3mkq_B 7 DPHIRFDLA---LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQH-----S---FDKLSFLY 70 (177)
T ss_dssp CHHHHHHHH---HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT-----C---HHHHHHHH
T ss_pred ChHHHHHHH---HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC-----C---HHHHHHHH
Confidence 344444443 4678888888877654 567788888888888888888888888752 2 22345556
Q ss_pred HHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 006562 528 SSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQV 577 (640)
Q Consensus 528 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 577 (640)
...|+.+.-....+.+...... .....++...|+++++++.|.+.
T Consensus 71 ~~tg~~e~L~kla~iA~~~g~~-----n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 71 LVTGDVNKLSKMQNIAQTREDF-----GSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHTCHHHHHHHHHHHHHTTCH-----HHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHCccH-----HHHHHHHHHcCCHHHHHHHHHHC
Confidence 6677776655555544433221 22334466788888888888654
No 246
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.99 E-value=0.19 Score=49.80 Aligned_cols=86 Identities=14% Similarity=0.107 Sum_probs=73.1
Q ss_pred HHHhcCCHHHHHHHHHHHHccc-----Cchh--HH----------------HhHHHHHHhhhcHHHHHHHHHHHHHcCCC
Q 006562 45 KLCSLRNWSKAIRILDSLLAQS-----YEIQ--DI----------------CNRAFCYSQLELHKHVIRDCDKALQLDPT 101 (640)
Q Consensus 45 ~~~~~~~y~~Ai~~y~~ai~~~-----~~~~--~~----------------~~~A~~~~~~g~~~~Ai~~~~~al~~~P~ 101 (640)
.....|+...|+..+.+|+.+. ++.. .| ..++.+++..|++.+|+..+..++..+|-
T Consensus 124 ~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~ 203 (388)
T 2ff4_A 124 HAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPY 203 (388)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 3456799999999999999885 1110 01 24667788999999999999999999999
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006562 102 LLQAYILKGCAFSALGRKEEALSVWEKGY 130 (640)
Q Consensus 102 ~~~a~~~~g~~y~~~g~~~~A~~~~~~al 130 (640)
+-.+|..+-.+|...|+..+|+..|+++-
T Consensus 204 ~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 204 REPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999999999984
No 247
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=94.90 E-value=1.3 Score=40.16 Aligned_cols=118 Identities=19% Similarity=0.063 Sum_probs=70.5
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 006562 459 RAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEE 538 (640)
Q Consensus 459 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~ 538 (640)
....|..++|+......++..|.+......+..+++-.|+|+.|...++.+.+++|........+.... .|..
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI-------~aE~ 79 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLV-------KAAQ 79 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH-------HHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHH-------HHHH
Confidence 455677788888888888888888887777888888888888888888888888776543221111100 1111
Q ss_pred HHHHHHcc--Cc------ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Q 006562 539 AHLKAIQL--DR------NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKR 583 (640)
Q Consensus 539 ~~~~a~~~--~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 583 (640)
.=.+.+.- .| ........-+......|+.++|...-.++++..|.
T Consensus 80 ~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~ 132 (273)
T 1zbp_A 80 ARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE 132 (273)
T ss_dssp HHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcc
Confidence 11222211 11 11222233444555567888887777777776653
No 248
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.74 E-value=3.9 Score=41.04 Aligned_cols=239 Identities=11% Similarity=-0.010 Sum_probs=140.1
Q ss_pred ccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHH---HHH-ccCHHHHHHHHHHHHHhC----C
Q 006562 375 KSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTA---RAF-QRELEAAISDFTEAIQSN----P 446 (640)
Q Consensus 375 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~---~~~-~g~~~~A~~~~~~al~~~----p 446 (640)
...+............++..|+++...+.+.-..........+...+... +.. ....+. ......+..- .
T Consensus 50 ~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~~d~--~~~~~~i~~l~~vte 127 (445)
T 4b4t_P 50 SDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLDL--NTRISVIETIRVVTE 127 (445)
T ss_dssp CSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCTTHH--HHHHHHHHCCSSSSS
T ss_pred cchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchhH--HHHHHHHHHHHHHhc
Confidence 34455567777888889999999988887765554443333332222221 111 111111 1111222211 1
Q ss_pred C-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH--
Q 006562 447 S-------AGEAWKRRGQARAALGESVEAIQDLSKALEF-EPN-S----ADILHERGIVNFKFKDFNAAVEDLSACVK-- 511 (640)
Q Consensus 447 ~-------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~-~----~~~~~~la~~~~~~~~~~~A~~~~~~al~-- 511 (640)
+ .......++.++...|++.+|...+.....- ... + .+.+.....++...+++..|...++++..
T Consensus 128 ~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~ 207 (445)
T 4b4t_P 128 NKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKT 207 (445)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 1 2345678999999999999999999887642 211 1 45778889999999999999999998743
Q ss_pred -hCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHccC-----cccHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHh
Q 006562 512 -LDKENK----SAYTYLGLALSSIGEYKKAEEAHLKAIQLD-----RNFLEAWGHLTQFYQDLANS-EKALECLQQVLYI 580 (640)
Q Consensus 512 -~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-----~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~ 580 (640)
..+..+ ..+...|.++...++|.+|-.+|..++... |.........+.++.-+..+ ..--....+.. .
T Consensus 208 ~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~-~ 286 (445)
T 4b4t_P 208 FKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQ-N 286 (445)
T ss_dssp HHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHH-H
T ss_pred cccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHh-h
Confidence 233333 456778999999999999999999987642 22112222222222222111 11111111111 1
Q ss_pred CC--CChHHHHHHHHHHHh--cCCHHHHHHHHHHhhccCC
Q 006562 581 DK--RFSKAYHLRGLLLHG--LGQHKKAIKDLSSGLGIDP 616 (640)
Q Consensus 581 ~~--~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p 616 (640)
++ .....+..+..+|.. ..+++.....|...+..+|
T Consensus 287 ~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~ 326 (445)
T 4b4t_P 287 DNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNEDD 326 (445)
T ss_dssp HSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCC
T ss_pred cccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcccc
Confidence 12 123455666666654 4578888888877665544
No 249
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.41 E-value=0.61 Score=46.05 Aligned_cols=114 Identities=12% Similarity=0.066 Sum_probs=75.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHH-HHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 006562 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAA-ISDFTEAIQSNPSAGEAWKRRGQARAALG 463 (640)
Q Consensus 385 ~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~p~~~~~~~~la~~~~~~~ 463 (640)
...|......|+...|...+.+++.+....+-.- .. ...+-.+ ...+++. ...+...++..+...|
T Consensus 119 ~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~--~~-----~~~w~~~~r~~l~~~------~~~a~~~~~~~~l~~g 185 (388)
T 2ff4_A 119 KTAGVHAAAAGRFEQASRHLSAALREWRGPVLDD--LR-----DFQFVEPFATALVED------KVLAHTAKAEAEIACG 185 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGG--GT-----TSTTHHHHHHHHHHH------HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCC--CC-----chhHHHHHHHHHHHH------HHHHHHHHHHHHHHCC
Confidence 3344555567899999999999998754321100 00 0111111 1111111 1123445677788889
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006562 464 ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVK 511 (640)
Q Consensus 464 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 511 (640)
++.+++..+..++..+|-+..++..+..++...|+..+|+..|+++..
T Consensus 186 ~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 186 RASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999998888888888889999999999888887754
No 250
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=94.01 E-value=1.4 Score=40.03 Aligned_cols=59 Identities=15% Similarity=0.197 Sum_probs=40.9
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Q 006562 390 AQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA 448 (640)
Q Consensus 390 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 448 (640)
.++..|+.++|+......++.+|.+......+...+.-.|+++.|...++-+.+++|..
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 34556677777777777777777777777777777777777777777777777776654
No 251
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.41 E-value=1.8 Score=43.72 Aligned_cols=131 Identities=11% Similarity=0.016 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH-----------hCCCCHHHHHHHHHHHHHccCHHHHHH----------HHHHH
Q 006562 383 FRLSRGIAQVNEGKYASAISIFDQILK-----------EDPMYPEALIGRGTARAFQRELEAAIS----------DFTEA 441 (640)
Q Consensus 383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~-----------~~~~~~~~~~~la~~~~~~g~~~~A~~----------~~~~a 441 (640)
.++..-..++..+++++|.++...++. +++-.+.+|+..+.++...|+...... .+-.+
T Consensus 138 ~~lL~~i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~ 217 (523)
T 4b4t_S 138 MHLLVQLFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKF 217 (523)
T ss_dssp -----------------------------------------------------------------CHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHH
Confidence 334444455667777777776655441 122234556666666666665443211 11122
Q ss_pred HHh-----CCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006562 442 IQS-----NPS-AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS-------ADILHERGIVNFKFKDFNAAVEDLSA 508 (640)
Q Consensus 442 l~~-----~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~~~~~~A~~~~~~ 508 (640)
++. ++. .+..+..+-+.|...+.+++|.....++. .|.. ...++.+|.++.-.++|.+|.+++..
T Consensus 218 ~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~ 295 (523)
T 4b4t_S 218 LKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIA 295 (523)
T ss_dssp HHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 211 111 13345555566666666666666666553 3321 22344455555555666666666655
Q ss_pred HHHhCCC
Q 006562 509 CVKLDKE 515 (640)
Q Consensus 509 al~~~~~ 515 (640)
|+...|.
T Consensus 296 A~rkap~ 302 (523)
T 4b4t_S 296 AIRKAPH 302 (523)
T ss_dssp HTSSCSC
T ss_pred HHHhCCc
Confidence 5555443
No 252
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=93.38 E-value=0.42 Score=48.58 Aligned_cols=79 Identities=18% Similarity=0.086 Sum_probs=70.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHH
Q 006562 485 ILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD 563 (640)
Q Consensus 485 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 563 (640)
.+..+|.+......+..|..+|.+|..+.|++...+..+|.+....|+.-+|+-+|.+++......+.+..++..++..
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 5667888888888999999999999999999999999999999999999999999999998877788888888877654
No 253
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=93.35 E-value=2.5 Score=48.41 Aligned_cols=142 Identities=13% Similarity=-0.021 Sum_probs=94.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------------------
Q 006562 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN-------------------- 445 (640)
Q Consensus 386 ~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------------------- 445 (640)
.+...+...+.++-+.. .+...|.++...+.+|.++...|++++|..+|.++-..-
T Consensus 817 ~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 34445666777766544 445677888888999999999999999999998863110
Q ss_pred ---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-H----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcH
Q 006562 446 ---PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS-A----DILHERGIVNFKFKDFNAAVEDLSACVKLDKENK 517 (640)
Q Consensus 446 ---p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~----~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 517 (640)
...+..|..+..++...+.++.+++..+.|++..+.+ . ..|..+-..+...|+|++|...+...-.. ....
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~-~~r~ 971 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT-PLKK 971 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS-SSCH
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH-HHHH
Confidence 0113456667778888888999998888888876433 2 25666777788889999888777544222 1223
Q ss_pred HHHHHHHHHHHHcCC
Q 006562 518 SAYTYLGLALSSIGE 532 (640)
Q Consensus 518 ~~~~~la~~~~~~g~ 532 (640)
..+..+.......|.
T Consensus 972 ~cLr~LV~~lce~~~ 986 (1139)
T 4fhn_B 972 SCLLDFVNQLTKQGK 986 (1139)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhCCC
Confidence 344444444444443
No 254
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=93.26 E-value=0.64 Score=47.24 Aligned_cols=80 Identities=14% Similarity=0.020 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh
Q 006562 518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG 597 (640)
Q Consensus 518 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 597 (640)
..+..+|.+......+..|..+|.+|....|.+...++.+|.+....|+.-+|+-+|-+++......+.+..++..++..
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 46677899999999999999999999999999999999999999999999999999999998877788888888877654
No 255
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.11 E-value=0.62 Score=46.72 Aligned_cols=62 Identities=11% Similarity=0.027 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006562 416 EALIGRGTARAFQRELEAAISDFTEAIQSNPS---AGEAWKRRGQARAALGESVEAIQDLSKALE 477 (640)
Q Consensus 416 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 477 (640)
.++..+|..|...|++++|.+.|.++...... -.+.+....+++...++|..+...+.++..
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~ 196 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS 196 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34555556666666666666665555543221 234444555555555555555555555543
No 256
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=92.04 E-value=2 Score=47.16 Aligned_cols=99 Identities=9% Similarity=-0.125 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Q 006562 449 GEAWKRRGQARAALGESVEAIQDLSKALEF----EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD-KENKSAYTYL 523 (640)
Q Consensus 449 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l 523 (640)
...+..+-..|.+.|+.++|...|....+. ..-+...|..+...|.+.|+.++|.+.|++..+.. .-+...|..+
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 346777888999999999999999775432 23367889999999999999999999999988764 3356777778
Q ss_pred HHHHHHcCC-HHHHHHHHHHHHccC
Q 006562 524 GLALSSIGE-YKKAEEAHLKAIQLD 547 (640)
Q Consensus 524 a~~~~~~g~-~~~A~~~~~~a~~~~ 547 (640)
-.++.+.|+ .++|..+|+++....
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 788888887 478889999887753
No 257
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.88 E-value=0.68 Score=46.43 Aligned_cols=101 Identities=11% Similarity=-0.045 Sum_probs=74.0
Q ss_pred ccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CcH----
Q 006562 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPM---YPEALIGRGTARAFQRELEAAISDFTEAIQSNP--SAG---- 449 (640)
Q Consensus 379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~---- 449 (640)
.-...+..+|..++..|++++|.+.|.++...... -.+.++....++...+++..+..++.++..... .++
T Consensus 129 e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~ 208 (429)
T 4b4t_R 129 EQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRN 208 (429)
T ss_dssp CCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHH
Confidence 34557889999999999999999999998875332 367888889999999999999999999865422 122
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006562 450 EAWKRRGQARAALGESVEAIQDLSKALEFE 479 (640)
Q Consensus 450 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 479 (640)
......|.++...++|..|...|-.++...
T Consensus 209 ~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 209 RYKTYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 223334555566677777776666655543
No 258
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=91.66 E-value=2.4 Score=46.61 Aligned_cols=99 Identities=8% Similarity=-0.133 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Q 006562 415 PEALIGRGTARAFQRELEAAISDFTEAIQS----NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFE-PNSADILHER 489 (640)
Q Consensus 415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 489 (640)
...+..+-..|.+.|+.++|...|.+..+. ..-+...|..+-..|.+.|+.++|.+.|++..... .-+...|..+
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 456788889999999999999999775432 23467789999999999999999999999998764 2367788888
Q ss_pred HHHHHhcCC-HHHHHHHHHHHHHhC
Q 006562 490 GIVNFKFKD-FNAAVEDLSACVKLD 513 (640)
Q Consensus 490 a~~~~~~~~-~~~A~~~~~~al~~~ 513 (640)
..++.+.|+ .++|.+++++.....
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 889999998 478999999998875
No 259
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.51 E-value=0.67 Score=46.71 Aligned_cols=126 Identities=10% Similarity=-0.054 Sum_probs=43.1
Q ss_pred HHHHcCCHHHHHHHHHHHHH---h--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------------
Q 006562 458 ARAALGESVEAIQDLSKALE---F--------EPNSADILHERGIVNFKFKDFNAAVEDLSACVKL-------------- 512 (640)
Q Consensus 458 ~~~~~~~~~~A~~~~~~al~---~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-------------- 512 (640)
.++..+++++|..+-...+. + ++-...+|+.++.++...|+.............+
T Consensus 145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr 224 (523)
T 4b4t_S 145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLK 224 (523)
T ss_dssp ----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSC
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcc
Confidence 34556677777766654441 1 1222345555566666666555544333333221
Q ss_pred -CCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCc-----ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Q 006562 513 -DKE-NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR-----NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKR 583 (640)
Q Consensus 513 -~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 583 (640)
++. ....+..+-+.|...+.++.|..+..++.-... .....++++|+++..+++|.+|.+++..|+...|.
T Consensus 225 ~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~ 302 (523)
T 4b4t_S 225 HDNETKAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPH 302 (523)
T ss_dssp SSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSC
T ss_pred cCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 111 134555566666667777777777766642111 11344556677777777777777777777666553
No 260
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.76 E-value=5.1 Score=45.83 Aligned_cols=142 Identities=17% Similarity=0.015 Sum_probs=81.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC--------------------
Q 006562 488 ERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD-------------------- 547 (640)
Q Consensus 488 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-------------------- 547 (640)
.+...+...+.++-+.. .+...|.++...+.+|.++...|++++|..+|+++-...
T Consensus 817 ~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 34445555666655433 334556666666777777777777777777777653210
Q ss_pred ---cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-h----HHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCH
Q 006562 548 ---RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF-S----KAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI 619 (640)
Q Consensus 548 ---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 619 (640)
...+..|..+..++.+.|-++.+++..+.+++..+.+ . ..|..+=..+...|+|++|...+...-.. ....
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~-~~r~ 971 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT-PLKK 971 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS-SSCH
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH-HHHH
Confidence 0113455666677777777777777777777665432 2 14555566677777877777666443211 1223
Q ss_pred HHHHHHHHHHHHcCC
Q 006562 620 ECLYLRASCYHAIGE 634 (640)
Q Consensus 620 ~~~~~la~~~~~~g~ 634 (640)
+.+..+.....+.|.
T Consensus 972 ~cLr~LV~~lce~~~ 986 (1139)
T 4fhn_B 972 SCLLDFVNQLTKQGK 986 (1139)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhCCC
Confidence 444444444444443
No 261
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=90.07 E-value=3.8 Score=44.82 Aligned_cols=226 Identities=11% Similarity=0.026 Sum_probs=122.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC---C---CH----HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH-
Q 006562 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDP---M---YP----EALIGRGTARAFQRELEAAISDFTEAIQSNPSAG- 449 (640)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~---~---~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~- 449 (640)
..+++.+|.++... ..+++.++...+..+. . .. .+...+|.++.-.++ +++.+.+...+..+....
T Consensus 413 ~GAllaLGli~ag~--~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~dd~~~~~ 489 (963)
T 4ady_A 413 GGSLYGLGLIYAGF--GRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLYNDSATSG 489 (963)
T ss_dssp HHHHHHHHHHTTTT--THHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHhcCCC--cHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhcCCHHHH
Confidence 34556666655444 4578888888776443 0 11 355677777776665 456677777776443211
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHH----HHHHHH
Q 006562 450 -EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKS----AYTYLG 524 (640)
Q Consensus 450 -~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~----~~~~la 524 (640)
.+-..+|.++...|+-+-....+..+.+...+...-...+|..+...|+.+.+...++..... .++. +.+.+|
T Consensus 490 ~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~--~dp~vRygaa~alg 567 (963)
T 4ady_A 490 EAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLAS--DESLLRYGGAFTIA 567 (963)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC--SCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC--CCHHHHHHHHHHHH
Confidence 244557777778888776666666666543322222334445555677777666666654443 2333 334567
Q ss_pred HHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh--cCC-H
Q 006562 525 LALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG--LGQ-H 601 (640)
Q Consensus 525 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~--~g~-~ 601 (640)
..|...|+...-...+..+.....++..-...+|......|+.+.+...+..... ..++.+.+..+.++-. .|+ .
T Consensus 568 lAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~--~~d~~VR~gAalALGli~aGn~~ 645 (963)
T 4ady_A 568 LAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSK--SHNAHVRCGTAFALGIACAGKGL 645 (963)
T ss_dssp HHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGG--CSCHHHHHHHHHHHHHHTSSSCC
T ss_pred HHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhccCCCc
Confidence 7778889965544566666654333333223333333445655444444433222 2345554444433332 222 2
Q ss_pred HHHHHHHHHhhc
Q 006562 602 KKAIKDLSSGLG 613 (640)
Q Consensus 602 ~~A~~~~~~al~ 613 (640)
.+++..+.+...
T Consensus 646 ~~aid~L~~L~~ 657 (963)
T 4ady_A 646 QSAIDVLDPLTK 657 (963)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHcc
Confidence 677777777653
No 262
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=88.57 E-value=6 Score=43.30 Aligned_cols=238 Identities=14% Similarity=0.064 Sum_probs=135.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhC-CCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---C---cH----
Q 006562 385 LSRGIAQVNEGKYASAISIFDQILKED-PMY----PEALIGRGTARAFQRELEAAISDFTEAIQSNP---S---AG---- 449 (640)
Q Consensus 385 ~~~a~~~~~~g~~~~A~~~~~~~l~~~-~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~---~~---- 449 (640)
..+|.+ ..|+.++++..+.+.+... .++ .-+++.+|.++...+ .+++.++...+.... . ..
T Consensus 380 aSLGlI--h~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~ 455 (963)
T 4ady_A 380 ASLGVI--HKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLH 455 (963)
T ss_dssp HHHHHH--TSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHH
T ss_pred HHhhhh--ccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHH
Confidence 344443 4678888888887766522 222 346677777776555 468888888776543 0 11
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 006562 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNS--ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLAL 527 (640)
Q Consensus 450 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 527 (640)
.+-..+|.++...++ +++.+.+...+..+... ..+-..+|.++...|+-+.....+..+.+...+...-...+|..+
T Consensus 456 gAaLGLGla~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGl 534 (963)
T 4ady_A 456 GASLGIGLAAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLAL 534 (963)
T ss_dssp HHHHHHHHHSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHh
Confidence 244466776665555 45667777776643321 134556788888888877766666666654433333334455555
Q ss_pred HHcCCHHHHHHHHHHHHccCccc--HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHH
Q 006562 528 SSIGEYKKAEEAHLKAIQLDRNF--LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAI 605 (640)
Q Consensus 528 ~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~ 605 (640)
...|+.+.+....+......... ..+-..+|..|...|+...-...+..+.....++..-...+|..+...|+.+.+.
T Consensus 535 l~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~ 614 (963)
T 4ady_A 535 INYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVP 614 (963)
T ss_dssp HTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHH
T ss_pred hhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHH
Confidence 66788777666666554432111 2233456777888898755555777776543333333333444444566655555
Q ss_pred HHHHHhhccCCCCHHHHHHHHHHH
Q 006562 606 KDLSSGLGIDPSNIECLYLRASCY 629 (640)
Q Consensus 606 ~~~~~al~~~p~~~~~~~~la~~~ 629 (640)
..+....+ -.++.+.+..+.++
T Consensus 615 rlv~~L~~--~~d~~VR~gAalAL 636 (963)
T 4ady_A 615 RIVQLLSK--SHNAHVRCGTAFAL 636 (963)
T ss_dssp HHTTTGGG--CSCHHHHHHHHHHH
T ss_pred HHHHHHHh--cCCHHHHHHHHHHH
Confidence 55443333 22455555544443
No 263
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=85.86 E-value=6.4 Score=31.44 Aligned_cols=79 Identities=9% Similarity=0.012 Sum_probs=57.1
Q ss_pred hcCCHHHHHHHHHHHHcccCchhHHHhHHHHHH-hhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHH
Q 006562 48 SLRNWSKAIRILDSLLAQSYEIQDICNRAFCYS-QLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVW 126 (640)
Q Consensus 48 ~~~~y~~Ai~~y~~ai~~~~~~~~~~~~A~~~~-~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~~~~A~~~~ 126 (640)
.-|+.++-+.||-+.-..+ .|..+|.-++ ..|+-++=-..+...+.-.|-+++..+.+|.+|.++|+..+|-..+
T Consensus 73 ~C~NlKrVi~C~~~~n~~s----e~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl 148 (172)
T 1wy6_A 73 KCQNLKSVVECGVINNTLN----EHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLL 148 (172)
T ss_dssp GCSCTHHHHHHHHHTTCCC----HHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhcHHHHHHHHHHhcchH----HHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHH
Confidence 4588889999987653322 2677777544 4555555444445546667778999999999999999999999999
Q ss_pred HHHH
Q 006562 127 EKGY 130 (640)
Q Consensus 127 ~~al 130 (640)
.+|=
T Consensus 149 ~~AC 152 (172)
T 1wy6_A 149 IEAC 152 (172)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9983
No 264
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=74.44 E-value=4.3 Score=29.65 Aligned_cols=36 Identities=17% Similarity=0.098 Sum_probs=22.8
Q ss_pred hhHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 006562 30 DSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQ 65 (640)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~y~~Ai~~y~~ai~~ 65 (640)
++++..++.-....-.+=..|+|++|+.+|..+|+.
T Consensus 10 ~~~~~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 10 DPQSTAAATVLKRAVELDSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444444444444444556788888888888888754
No 265
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=73.50 E-value=62 Score=30.56 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=21.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006562 481 NSADILHERGIVNFKFKDFNAAVEDL 506 (640)
Q Consensus 481 ~~~~~~~~la~~~~~~~~~~~A~~~~ 506 (640)
.+++.+..+|..|+..+++.+|..+|
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 56788888888888888888887776
No 266
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=72.17 E-value=65 Score=30.16 Aligned_cols=27 Identities=7% Similarity=-0.127 Sum_probs=20.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006562 481 NSADILHERGIVNFKFKDFNAAVEDLS 507 (640)
Q Consensus 481 ~~~~~~~~la~~~~~~~~~~~A~~~~~ 507 (640)
.++..+..+|..++..|++.+|..+|-
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 467788888888888888888777664
No 267
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=69.17 E-value=39 Score=37.63 Aligned_cols=106 Identities=13% Similarity=-0.008 Sum_probs=65.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---------------------C
Q 006562 523 LGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI---------------------D 581 (640)
Q Consensus 523 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---------------------~ 581 (640)
+...+...|.++-|. ..+...|.++..-+.+|+++...|++++|..+|+++-.- .
T Consensus 816 l~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e 891 (950)
T 4gq2_M 816 LVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 891 (950)
T ss_dssp HHHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTT
T ss_pred HHHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCccc
Confidence 444455556655433 234455556656667777777777777777777655210 0
Q ss_pred CC--ChHHHHHHHHHHHhcCCHHHHHHHHHHhhcc-CCCCHH----HHHHHHHHHHHc
Q 006562 582 KR--FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI-DPSNIE----CLYLRASCYHAI 632 (640)
Q Consensus 582 ~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~----~~~~la~~~~~~ 632 (640)
+. ....|.....++...+-++-+++..+.|++. .++++. .|..+-......
T Consensus 892 ~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~ 949 (950)
T 4gq2_M 892 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAA 949 (950)
T ss_dssp TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhC
Confidence 01 1236778888999999999999999999964 455553 444444444443
No 268
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=68.64 E-value=11 Score=26.40 Aligned_cols=36 Identities=19% Similarity=0.301 Sum_probs=27.1
Q ss_pred HHHHHHHH-HHHhcCCHHHHHHHHHHHHcccCchhHH
Q 006562 37 ITARIELA-KLCSLRNWSKAIRILDSLLAQSYEIQDI 72 (640)
Q Consensus 37 ~~~~~~~~-~~~~~~~y~~Ai~~y~~ai~~~~~~~~~ 72 (640)
+.+.+.++ .+++.|++++|+.+|.+||...+++..+
T Consensus 17 Fl~eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~L 53 (73)
T 3ax2_A 17 FLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQL 53 (73)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 44444554 5678999999999999999998777653
No 269
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=68.15 E-value=79 Score=29.56 Aligned_cols=80 Identities=10% Similarity=-0.071 Sum_probs=48.2
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHhCCCChHHHHHH
Q 006562 515 ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL---ANSEKALECLQQVLYIDKRFSKAYHLR 591 (640)
Q Consensus 515 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~l 591 (640)
.++..+..+|..+...|++.+|..+|-.. +.+++..+..+-.-+... |...+ ...+...
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~---~~~s~~~~a~~l~~w~~~~~~~~~~e---------------~dlf~~R 193 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFMLG---THDSMIKYVDLLWDWLCQVDDIEDST---------------VAEFFSR 193 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHTS---CHHHHHHHHHHHHHHHHHTTCCCHHH---------------HHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHhC---CCccHHHHHHHHHHHHHhcCCCCcch---------------HHHHHHH
Confidence 57899999999999999999998887521 112333333222222222 32222 3333333
Q ss_pred HH-HHHhcCCHHHHHHHHHHhh
Q 006562 592 GL-LLHGLGQHKKAIKDLSSGL 612 (640)
Q Consensus 592 a~-~~~~~g~~~~A~~~~~~al 612 (640)
+. .|...|+...|...+....
T Consensus 194 aVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 194 LVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHHHHTTBHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHH
Confidence 33 4567888888888877654
No 270
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=67.15 E-value=5.9 Score=28.79 Aligned_cols=28 Identities=25% Similarity=0.214 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006562 103 LQAYILKGCAFSALGRKEEALSVWEKGY 130 (640)
Q Consensus 103 ~~a~~~~g~~y~~~g~~~~A~~~~~~al 130 (640)
+..+-+++..+...|+|++|+.+.++|.
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 4466777888888888888888777774
No 271
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=66.84 E-value=41 Score=37.47 Aligned_cols=108 Identities=9% Similarity=-0.093 Sum_probs=62.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCc--HHHHHHHHHHHHHcC
Q 006562 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN-PSA--GEAWKRRGQARAALG 463 (640)
Q Consensus 387 ~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~--~~~~~~la~~~~~~~ 463 (640)
+...+...|.++-|. +.+..-|.++..-+.+|.++...|++++|..+|+++-..- ... .........+.-
T Consensus 816 l~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~--- 888 (950)
T 4gq2_M 816 LVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE--- 888 (950)
T ss_dssp HHHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHH---
T ss_pred HHHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccC---
Confidence 455666777776543 3556677788888889999999999999999998864211 110 000000000000
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 006562 464 ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKL 512 (640)
Q Consensus 464 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 512 (640)
..+........|.....++...+-++-++...+.|+..
T Consensus 889 -----------~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 889 -----------KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp -----------HTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred -----------cccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 00000111235556667777777777777777777764
No 272
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=64.24 E-value=13 Score=39.41 Aligned_cols=48 Identities=17% Similarity=0.117 Sum_probs=44.3
Q ss_pred HhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHH
Q 006562 73 CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKE 120 (640)
Q Consensus 73 ~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~~~ 120 (640)
..+|...+..|+|+-|...++.++..+|++.+|...++.+|.++|.-.
T Consensus 453 ~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~~ 500 (658)
T 2cfu_A 453 LEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQA 500 (658)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhc
Confidence 578888899999999999999999999999999999999999999433
No 273
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=59.48 E-value=51 Score=27.24 Aligned_cols=61 Identities=11% Similarity=0.083 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------HHHH---HHHHHHHHHccCHHHHHHHHHHHHH
Q 006562 383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMY------PEAL---IGRGTARAFQRELEAAISDFTEAIQ 443 (640)
Q Consensus 383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~------~~~~---~~la~~~~~~g~~~~A~~~~~~al~ 443 (640)
--+..|..++..|+|-+|-+.++.+....+.. ...+ ...|..+...|+...|...+.+++.
T Consensus 34 ~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 34 RAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34567788888999999999999988776543 1222 2234455667888888888888865
No 274
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=56.11 E-value=19 Score=25.91 Aligned_cols=27 Identities=19% Similarity=0.252 Sum_probs=22.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHcccCchh
Q 006562 44 AKLCSLRNWSKAIRILDSLLAQSYEIQ 70 (640)
Q Consensus 44 ~~~~~~~~y~~Ai~~y~~ai~~~~~~~ 70 (640)
-++|+.++|.+|...|+++.+...++.
T Consensus 61 k~~y~~~ny~ea~~l~~k~~n~ten~~ 87 (106)
T 2vkj_A 61 KDLFETANYGEALVFFEKALNLSDNEE 87 (106)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHhcchhHHHHHHHHHHccccCHH
Confidence 377999999999999999998776554
No 275
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=56.10 E-value=25 Score=24.51 Aligned_cols=32 Identities=16% Similarity=0.071 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhccCC
Q 006562 105 AYILKGCAFSALGRKEEALSVWEKGYEHALHQ 136 (640)
Q Consensus 105 a~~~~g~~y~~~g~~~~A~~~~~~al~~~~~~ 136 (640)
-...+|..+...|++++|..+|-+|+...|..
T Consensus 19 ~eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP 50 (73)
T 3ax2_A 19 EEIQLGEELLAQGDYEKGVDHLTNAIAVCGQP 50 (73)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 45678999999999999999999998887765
No 276
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=54.52 E-value=1.4e+02 Score=28.08 Aligned_cols=200 Identities=12% Similarity=0.026 Sum_probs=102.2
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHccCHH-HHHHHHHHHHH-------hCC
Q 006562 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKE-----DPMYPEALIGRGTARAFQRELE-AAISDFTEAIQ-------SNP 446 (640)
Q Consensus 380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-----~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~-------~~p 446 (640)
..+.++.-+..+++.|++..|.++..-.++. .|-+....-.+..++.....-+ .=..+.+++++ ..-
T Consensus 54 AidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~ 133 (336)
T 3lpz_A 54 AVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPA 133 (336)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTT
T ss_pred HHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCC
Confidence 3455666667777777777766665443331 1223344444555444333211 11222333332 122
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 006562 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS-ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGL 525 (640)
Q Consensus 447 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~ 525 (640)
.+++.+..+|..|+..+++.+|..+|- + ..++ ++.+..+-.-+...+ .|.....+...+.
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~---------------~~~e~dlfiaRaV 194 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQD---------------ESHTAPLYCARAV 194 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTS---------------CGGGHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhc---------------CCccHHHHHHHHH
Confidence 468899999999999999999988873 1 1122 233222211111111 2344444444443
Q ss_pred -HHHHcCCHHHHHHHHHHHHcc----C------------------cccHHH-HHHHHHHHHHhcC---HHHHHHHHHHHH
Q 006562 526 -ALSSIGEYKKAEEAHLKAIQL----D------------------RNFLEA-WGHLTQFYQDLAN---SEKALECLQQVL 578 (640)
Q Consensus 526 -~~~~~g~~~~A~~~~~~a~~~----~------------------~~~~~~-~~~la~~~~~~g~---~~~A~~~~~~al 578 (640)
.|...++...|...+...... + |..|.. +..+..+-++.+. +..-...|...+
T Consensus 195 L~yL~l~n~~~A~~~~~~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLLNFl~lLllt~q~~~~~lF~~L~~~Y~~~l 274 (336)
T 3lpz_A 195 LPYLLVANVRAANTAYRIFTSALVEDNKGLTVQNIGSQSAELRIFPSLPLLNFISMLLLSVQKGSPDLFRQLKSKYEANL 274 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHCTTSCCEESCC--CCCEECTTCHHHHHHHHHHHHHHSCCHHHHHHHHHHTHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHhhcCCCccccccccCCcccccCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 456678888887765544431 1 223321 1222223334453 333344555556
Q ss_pred HhCC-CChHHHHHHHHHHHhc
Q 006562 579 YIDK-RFSKAYHLRGLLLHGL 598 (640)
Q Consensus 579 ~~~~-~~~~~~~~la~~~~~~ 598 (640)
+.+| ........+|.+|+..
T Consensus 275 ~rd~~~~~~~L~~IG~~YFgi 295 (336)
T 3lpz_A 275 NELNGIWDTALELIAEMYFGI 295 (336)
T ss_dssp HTTTTTTHHHHHHHHHHHHCC
T ss_pred HhcHHHHHHHHHHHHHHHcCC
Confidence 6666 5666777777777654
No 277
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=54.28 E-value=18 Score=26.33 Aligned_cols=25 Identities=20% Similarity=-0.060 Sum_probs=18.4
Q ss_pred HHhHHHHHHhhhcHHHHHHHHHHHH
Q 006562 72 ICNRAFCYSQLELHKHVIRDCDKAL 96 (640)
Q Consensus 72 ~~~~A~~~~~~g~~~~Ai~~~~~al 96 (640)
+..||..+++.|+|++||...++|.
T Consensus 18 ~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 18 QSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 4577888888888888887665543
No 278
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=52.91 E-value=21 Score=26.40 Aligned_cols=37 Identities=19% Similarity=0.272 Sum_probs=28.7
Q ss_pred HHHHHHHHH-HHHhcCCHHHHHHHHHHHHcccCchhHH
Q 006562 36 AITARIELA-KLCSLRNWSKAIRILDSLLAQSYEIQDI 72 (640)
Q Consensus 36 ~~~~~~~~~-~~~~~~~y~~Ai~~y~~ai~~~~~~~~~ 72 (640)
.+.+.+.++ .++..|+++.|+.+|.+||...++|..+
T Consensus 19 ~Fl~eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~L 56 (95)
T 1om2_A 19 FFLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQL 56 (95)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 355556666 5579999999999999999988777654
No 279
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=51.45 E-value=32 Score=29.89 Aligned_cols=34 Identities=9% Similarity=0.119 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 006562 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY 414 (640)
Q Consensus 381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~ 414 (640)
+.+++.+|..++..++|.+|.+.+..|+...|..
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~ 47 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRS 47 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHh
Confidence 5677888888888888888888888888877754
No 280
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=51.07 E-value=42 Score=27.49 Aligned_cols=88 Identities=19% Similarity=0.171 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHcccCchhHHHhHHHHHHhhhcHHHHH-HHHHH--HHHcCCCchHHHHHHHHHH
Q 006562 37 ITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVI-RDCDK--ALQLDPTLLQAYILKGCAF 113 (640)
Q Consensus 37 ~~~~~~~~~~~~~~~y~~Ai~~y~~ai~~~~~~~~~~~~A~~~~~~g~~~~Ai-~~~~~--al~~~P~~~~a~~~~g~~y 113 (640)
-.+.+.....|-+.||.+-|..+.+.=-..=....-|.+|.+|.+.-.+..-- ..... .++-||.+...|+.+|+
T Consensus 9 q~a~i~a~~afl~~dYs~VI~~L~~~~~~~Lp~~~kY~LA~SYI~~e~Ls~eQKenIln~itlkSde~yL~YWIyiGR-- 86 (161)
T 2ynq_A 9 QEAYIQSTELFLQNKYSDVITTLEDYAPEDMPYVIQYELASSYVMTESLTEEQRQTVSNNITLKTDEQYMLYWIYIGR-- 86 (161)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHTTSCGGGSCHHHHHHHHHHHHHTSSSCHHHHHHHHHTCCTTSCHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcCChhhCChhHHHHHHHHHHHccCCCHHHHHHHHhhCCccCCHHHHHHHHHHcC--
Confidence 34446777889999999999988765433322333677999999986654322 22222 23345666666766664
Q ss_pred HHcCCHHHHHHHHHHH
Q 006562 114 SALGRKEEALSVWEKG 129 (640)
Q Consensus 114 ~~~g~~~~A~~~~~~a 129 (640)
|++++|+..-++.
T Consensus 87 ---g~~~eAlDiA~~L 99 (161)
T 2ynq_A 87 ---SQSEEALELARTI 99 (161)
T ss_dssp ---TCHHHHHHHHHHH
T ss_pred ---CchHHHHHHHHhc
Confidence 8999999765554
No 281
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=49.80 E-value=30 Score=24.88 Aligned_cols=16 Identities=19% Similarity=0.075 Sum_probs=8.6
Q ss_pred hcCCHHHHHHHHHHHH
Q 006562 48 SLRNWSKAIRILDSLL 63 (640)
Q Consensus 48 ~~~~y~~Ai~~y~~ai 63 (640)
..|+|++|+.+|.++|
T Consensus 31 ~~g~y~eAl~lY~~ai 46 (83)
T 2w2u_A 31 KEGNAEEAITNYKKAI 46 (83)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHH
Confidence 4455555555555554
No 282
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=48.54 E-value=2.6e+02 Score=29.32 Aligned_cols=214 Identities=10% Similarity=-0.033 Sum_probs=93.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH------HH
Q 006562 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR------AA 461 (640)
Q Consensus 388 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~------~~ 461 (640)
-.+++-.|+|+.|+.++-+. +..--..+|.++...|-... -...+..++..+ ..+++.+. +.
T Consensus 301 f~vLlLtgqFE~AI~~L~~~------~~vdAVH~AIaL~~~gLL~~----~~~lls~~~~~~--~lN~arLI~~Yt~~F~ 368 (661)
T 2qx5_A 301 LQTLLLSGLYGLAIDYTYTF------SEMDAVHLAIGLASLKLFKI----DSSTRLTKKPKR--DIRFANILANYTKSFR 368 (661)
T ss_dssp HHHHHHTTCHHHHHHHHHTT------CHHHHHHHHHHHHHTTC-----------------------CHHHHHHHHHTTTT
T ss_pred HHHHHHHhhHHHHHHHHHhc------CchhHHHHHHHHHHcCCccC----CCcccccCCCcc--cccHHHHHHHHHHHhh
Confidence 45667789999999987754 22222333444444444432 222333333322 22222222 35
Q ss_pred cCCHHHHHHHHHHHHHhCC--CCH-HHHHHHHHHHHhcCCHHHHH--------------HHHHHHHHhCCCc-H----HH
Q 006562 462 LGESVEAIQDLSKALEFEP--NSA-DILHERGIVNFKFKDFNAAV--------------EDLSACVKLDKEN-K----SA 519 (640)
Q Consensus 462 ~~~~~~A~~~~~~al~~~p--~~~-~~~~~la~~~~~~~~~~~A~--------------~~~~~al~~~~~~-~----~~ 519 (640)
..+..+|+++|--+ .... +.. ..+..+..+....++++.=+ +-+...+.+ .+ . .+
T Consensus 369 ~td~~~Al~Y~~li-~l~~g~~~~~~~~~~l~eLvletr~f~~LLG~i~~dG~r~~G~i~~~~~li~l--~d~~~~~~~i 445 (661)
T 2qx5_A 369 YSDPRVAVEYLVLI-TLNEGPTDVELCHEALRELVLETKEFTVLLGKIGRDGARIPGVIEERQPLLHV--RDEKEFLHTI 445 (661)
T ss_dssp TTCHHHHHHHHHGG-GGSCCHHHHHHHHHHHHHHHHHHCCHHHHHCEECTTSCEECCHHHHTCGGGTC--SCHHHHHHHH
T ss_pred cCCHHHHHHHHHHH-hccCCchHHHHHHHHHHHHHHhcccHHHHcCCcCCCCCcCcchHHHhhccccc--ccHHHHHHHH
Confidence 57888888887665 3321 111 12333444444444433221 111111111 11 1 12
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhc--------------CHH-HHHHHHHHHHHhCC--
Q 006562 520 YTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA--------------NSE-KALECLQQVLYIDK-- 582 (640)
Q Consensus 520 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g--------------~~~-~A~~~~~~al~~~~-- 582 (640)
....|.-....|++++|+..|.-+-+.+.--.-.-..|+.+..... +.. .|....+. ...++
T Consensus 446 ~~~aA~~ae~~G~~~dAi~LY~La~~~d~vl~lln~~Ls~~l~~~~~~~~~~~~~~~~~~~l~~la~~i~~~-y~~~~~~ 524 (661)
T 2qx5_A 446 TEQAARRADEDGRIYDSILLYQLAEEYDIVITLVNSLLSDTLSASDLDQPLVGPDDNSETNPVLLARRMASI-YFDNAGI 524 (661)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTSCSSCSSCCTTTCHHHHHHHHHHH-HTTCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHH-HhcCchh
Confidence 2334556667788888887776554322111122223444443321 111 22222221 11111
Q ss_pred ------CC---hHHHHHHHHHH--HhcCCHHHHHHHHHHhhccCCCC
Q 006562 583 ------RF---SKAYHLRGLLL--HGLGQHKKAIKDLSSGLGIDPSN 618 (640)
Q Consensus 583 ------~~---~~~~~~la~~~--~~~g~~~~A~~~~~~al~~~p~~ 618 (640)
.. ...+..+..++ ...|+++.|+..+++ +.+-|.+
T Consensus 525 ~~~~~~~~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~-L~llPl~ 570 (661)
T 2qx5_A 525 SRQIHVKNKEICMLLLNISSIRELYFNKQWQETLSQMEL-LDLLPFS 570 (661)
T ss_dssp HTTSCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-TSCSCC-
T ss_pred hhhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-CCCCCCC
Confidence 01 12344455554 789999999999988 4455554
No 283
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=47.23 E-value=1.2e+02 Score=25.08 Aligned_cols=61 Identities=10% Similarity=0.008 Sum_probs=41.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHccCccc---HHHH------HHHHHHHHHhcCHHHHHHHHHHHHHh
Q 006562 520 YTYLGLALSSIGEYKKAEEAHLKAIQLDRNF---LEAW------GHLTQFYQDLANSEKALECLQQVLYI 580 (640)
Q Consensus 520 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~---~~~~------~~la~~~~~~g~~~~A~~~~~~al~~ 580 (640)
-+..+..++..|+|-+|-+.++.+....+.. ...+ ...|..+.+.|+..-|...+.+++..
T Consensus 35 ~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 35 AVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3455677777788888888888888765433 2222 22334456778999999998888763
No 284
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=44.78 E-value=30 Score=24.90 Aligned_cols=16 Identities=13% Similarity=0.063 Sum_probs=6.8
Q ss_pred hcCCHHHHHHHHHHHH
Q 006562 48 SLRNWSKAIRILDSLL 63 (640)
Q Consensus 48 ~~~~y~~Ai~~y~~ai 63 (640)
..|+|++|+.+|.++|
T Consensus 23 ~~g~y~eAl~lY~~ai 38 (83)
T 2v6y_A 23 KEGKVEDAITYYKKAI 38 (83)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHH
Confidence 3344444444444443
No 285
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=42.95 E-value=61 Score=28.08 Aligned_cols=82 Identities=15% Similarity=-0.020 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHH-----HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHH
Q 006562 517 KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE-----AWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLR 591 (640)
Q Consensus 517 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l 591 (640)
....+.+|.++...++|.+|...+..|+...|.... ++..+.-+-+-+|+... ...+++ .+. ..+..+
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP~-~~ll~~----~~~--~~y~~L 86 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMPT-VELLKK----YHL--MQFAEV 86 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEEC-HHHHHH----TTC--GGGHHH
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCCC-HHHhhh----Cch--hHHHHH
Confidence 456788999999999999999999999998776532 33344444456677543 233332 121 135555
Q ss_pred HHHHHhcCCHHHHHH
Q 006562 592 GLLLHGLGQHKKAIK 606 (640)
Q Consensus 592 a~~~~~~g~~~~A~~ 606 (640)
..+ .+.|+...-..
T Consensus 87 ~~A-vr~Gdl~~f~~ 100 (203)
T 3t5x_A 87 TRA-VSEGNLLLLHE 100 (203)
T ss_dssp HHH-HHHTCHHHHHH
T ss_pred HHH-HHhCCHHHHHH
Confidence 544 45676544333
No 286
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=42.83 E-value=0.00018 Score=70.67 Aligned_cols=224 Identities=16% Similarity=0.111 Sum_probs=0.0
Q ss_pred ccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 006562 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQA 458 (640)
Q Consensus 379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 458 (640)
+.+..|..+|.+.+..+...+|++.|-++ +++..+.....+....|.|++-+.++.-+.+. -..+.+-..+..+
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA-----~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~-~ke~~IDteLi~a 125 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKK-ARESYVETELIFA 125 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCC-----SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-CCSTTTTHHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhC-----CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-hcccccHHHHHHH
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 006562 459 RAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEE 538 (640)
Q Consensus 459 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~ 538 (640)
|.+.++..+-.+.+ ...+..-....|.-++..|.|+.|.-.|...-.... ++.++..+|+|..|++
T Consensus 126 yAk~~rL~elEefl------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~ak--------LAstLV~L~~yq~AVd 191 (624)
T 3lvg_A 126 LAKTNRLAELEEFI------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGR--------LASTLVHLGEYQAAVD 191 (624)
T ss_dssp HHTSCSSSTTTSTT------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTT--------TSSSSSSCSGGGSSTT
T ss_pred HHhhCcHHHHHHHH------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHH--------HHHHHHHHHHHHHHHH
Q ss_pred HHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCC
Q 006562 539 AHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN 618 (640)
Q Consensus 539 ~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 618 (640)
..++| +++.+|-.....+...+++.-|..+--..+ -+++-+-.+...|...|-+++-+..++.++.+..-+
T Consensus 192 aArKA-----ns~ktWKeV~~ACvd~~EfrLAqicGLniI----vhadeL~elv~~YE~~G~f~ELIsLlEaglglErAH 262 (624)
T 3lvg_A 192 GARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIV----VHADELEELINYYQDRGYFEELITMLEAALGLERAH 262 (624)
T ss_dssp TTTTC-----CSSCSHHHHTHHHHHSCTTTTTTHHHHHHH----CCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCC
T ss_pred HHHhc-----CChhHHHHHHHHHhCchHHHHHHHhcchhc----ccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchh
Q ss_pred HHHHHHHHHHHHH
Q 006562 619 IECLYLRASCYHA 631 (640)
Q Consensus 619 ~~~~~~la~~~~~ 631 (640)
......||.+|.+
T Consensus 263 mGmFTELaILYsK 275 (624)
T 3lvg_A 263 MGMFTELAILYSK 275 (624)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHh
No 287
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=42.06 E-value=21 Score=25.35 Aligned_cols=25 Identities=16% Similarity=0.036 Sum_probs=15.9
Q ss_pred HhHHHHHHhhhcHHHHHHHHHHHHH
Q 006562 73 CNRAFCYSQLELHKHVIRDCDKALQ 97 (640)
Q Consensus 73 ~~~A~~~~~~g~~~~Ai~~~~~al~ 97 (640)
..+|+=|..+|+|+.|+..|+.+++
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHH
Confidence 4566666666666666666666555
No 288
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=41.25 E-value=31 Score=25.51 Aligned_cols=32 Identities=16% Similarity=0.071 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhccCC
Q 006562 105 AYILKGCAFSALGRKEEALSVWEKGYEHALHQ 136 (640)
Q Consensus 105 a~~~~g~~y~~~g~~~~A~~~~~~al~~~~~~ 136 (640)
-.+.+|..+...|+++.|+.+|-+|+...|..
T Consensus 22 ~eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP 53 (95)
T 1om2_A 22 EEIQLGEELLAQGDYEKGVDHLTNAIAVCGQP 53 (95)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 35678999999999999999999998877653
No 289
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=39.90 E-value=68 Score=31.90 Aligned_cols=64 Identities=9% Similarity=-0.086 Sum_probs=42.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCC--C--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc-Cccc
Q 006562 487 HERGIVNFKFKDFNAAVEDLSACVKLDK--E--------NKSAYTYLGLALSSIGEYKKAEEAHLKAIQL-DRNF 550 (640)
Q Consensus 487 ~~la~~~~~~~~~~~A~~~~~~al~~~~--~--------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-~~~~ 550 (640)
..+-.+|++.++...+...++..-...+ . -...++++|.++...++|.+|...+..|+.. .|..
T Consensus 180 n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 180 NKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 3345677788887777777765433322 1 1356677788888888888888888888776 5543
No 290
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=38.96 E-value=68 Score=31.92 Aligned_cols=63 Identities=10% Similarity=-0.072 Sum_probs=45.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHccC--------cc--cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CCCC
Q 006562 522 YLGLALSSIGEYKKAEEAHLKAIQLD--------RN--FLEAWGHLTQFYQDLANSEKALECLQQVLYI-DKRF 584 (640)
Q Consensus 522 ~la~~~~~~g~~~~A~~~~~~a~~~~--------~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~ 584 (640)
.+-.+|++.++...+...+...-... |. .....+.+|+++...++|.+|.+.+..|+.. .|..
T Consensus 181 ~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 181 KLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 45678888888888877776543221 11 1456778899999999999999999988887 6654
No 291
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=38.82 E-value=1.1e+02 Score=26.23 Aligned_cols=57 Identities=5% Similarity=-0.092 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHccc---CchhHHHhHHHHHHhhhcHHHHHHHHHHHHH
Q 006562 41 IELAKLCSLRNWSKAIRILDSLLAQS---YEIQDICNRAFCYSQLELHKHVIRDCDKALQ 97 (640)
Q Consensus 41 ~~~~~~~~~~~y~~Ai~~y~~ai~~~---~~~~~~~~~A~~~~~~g~~~~Ai~~~~~al~ 97 (640)
+..+.+|..++...+.+.|.-..... .-+..|..-|..+...|++.+|-..++..|+
T Consensus 84 l~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~ 143 (202)
T 3esl_A 84 IWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAE 143 (202)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
No 292
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=38.61 E-value=16 Score=26.45 Aligned_cols=19 Identities=11% Similarity=-0.006 Sum_probs=15.8
Q ss_pred HhcCCHHHHHHHHHHHHcc
Q 006562 47 CSLRNWSKAIRILDSLLAQ 65 (640)
Q Consensus 47 ~~~~~y~~Ai~~y~~ai~~ 65 (640)
=..|+|++|+.+|..+++.
T Consensus 24 D~~g~y~eAl~~Y~~aie~ 42 (85)
T 2v6x_A 24 DTATQYEEAYTAYYNGLDY 42 (85)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 3679999999999998864
No 293
>1pgy_A SWA2P; UBA, ubiquitin, auxilin, ubiquitin-associated domain, protein binding; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=38.45 E-value=38 Score=20.53 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=21.4
Q ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHc
Q 006562 40 RIELAKLCSLR-NWSKAIRILDSLLA 64 (640)
Q Consensus 40 ~~~~~~~~~~~-~y~~Ai~~y~~ai~ 64 (640)
..++|+++..| ++++|-.+|.+.+.
T Consensus 8 DmEiAkLMSLGl~id~A~~~Ye~gi~ 33 (47)
T 1pgy_A 8 DMEIARLMSLGLSIEEATEFYENDVT 33 (47)
T ss_dssp HHHHHHHHHHCCCSHHHHHHHHHHCS
T ss_pred HHHHHHHHHccCChhhHHHHHHcCch
Confidence 36788999998 99999999998763
No 294
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=44.17 E-value=6.8 Score=41.45 Aligned_cols=50 Identities=16% Similarity=0.097 Sum_probs=45.6
Q ss_pred HhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHH
Q 006562 73 CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEA 122 (640)
Q Consensus 73 ~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~~~~A 122 (640)
..+|+..+..|+|+-|...++.++..+|++.+|...++.+|.++|.-.+.
T Consensus 465 ~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~~~~ 514 (668)
T 2yhe_A 465 LKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGYQTEN 514 (668)
Confidence 56788889999999999999999999999999999999999999965543
No 295
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=37.70 E-value=37 Score=24.43 Aligned_cols=13 Identities=8% Similarity=-0.082 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHcc
Q 006562 53 SKAIRILDSLLAQ 65 (640)
Q Consensus 53 ~~Ai~~y~~ai~~ 65 (640)
++|+.+..+|++.
T Consensus 17 ~~Ai~lv~~Ave~ 29 (83)
T 2w2u_A 17 EMARKYAINAVKA 29 (83)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3455555555433
No 296
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=37.23 E-value=88 Score=23.07 Aligned_cols=28 Identities=7% Similarity=0.139 Sum_probs=17.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 006562 386 SRGIAQVNEGKYASAISIFDQILKEDPM 413 (640)
Q Consensus 386 ~~a~~~~~~g~~~~A~~~~~~~l~~~~~ 413 (640)
..|..++..|+|-+|-+.++.+....|.
T Consensus 6 ~~~~~lfn~g~~~eaHEvlE~~W~~~~~ 33 (94)
T 2cwy_A 6 EEVLGLWRAGRYYEVHEVLEPYWLKATG 33 (94)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhhCCC
Confidence 3455666667777777777666665543
No 297
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=36.91 E-value=40 Score=23.86 Aligned_cols=28 Identities=18% Similarity=0.256 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 006562 383 FRLSRGIAQVNEGKYASAISIFDQILKE 410 (640)
Q Consensus 383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~ 410 (640)
....+|+-+...|+|+.|+.+|+.+++.
T Consensus 14 e~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 14 ENVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 3456788888889999999999888763
No 298
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=35.46 E-value=41 Score=24.14 Aligned_cols=12 Identities=8% Similarity=-0.177 Sum_probs=5.9
Q ss_pred HHHHHHHHHHcc
Q 006562 54 KAIRILDSLLAQ 65 (640)
Q Consensus 54 ~Ai~~y~~ai~~ 65 (640)
+|+.+..+|++.
T Consensus 10 ~Ai~lv~~Ave~ 21 (83)
T 2v6y_A 10 MARKYAILAVKA 21 (83)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 455555555433
No 299
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=32.56 E-value=84 Score=33.16 Aligned_cols=49 Identities=18% Similarity=0.224 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 006562 415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG 463 (640)
Q Consensus 415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 463 (640)
.......|...+..|+|.-|.+....++..+|++..+...++.+|.++|
T Consensus 449 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~ 497 (658)
T 2cfu_A 449 AERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLG 497 (658)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 3444445555555555655656555555555555555555555555554
No 300
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=31.95 E-value=74 Score=31.72 Aligned_cols=46 Identities=13% Similarity=0.102 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHcCCC--------chHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006562 85 HKHVIRDCDKALQLDPT--------LLQAYILKGCAFSALGRKEEALSVWEKGY 130 (640)
Q Consensus 85 ~~~Ai~~~~~al~~~P~--------~~~a~~~~g~~y~~~g~~~~A~~~~~~al 130 (640)
|+..+.+++.|+..-|. -.-|+..+|++|+-+|+|++|....+.++
T Consensus 164 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi 217 (454)
T 3myv_A 164 YDFIIETLEEAVTLMSEEKNNGRMNKYAARALLARIYLYHDDNRKAFDLADQLI 217 (454)
T ss_dssp HHHHHHHHHHHHHHCCCSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccCCeecHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 45677778888776553 23489999999999999999999888884
No 301
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=31.12 E-value=59 Score=23.93 Aligned_cols=15 Identities=7% Similarity=0.107 Sum_probs=6.7
Q ss_pred cCCHHHHHHHHHHHH
Q 006562 49 LRNWSKAIRILDSLL 63 (640)
Q Consensus 49 ~~~y~~Ai~~y~~ai 63 (640)
.|+|++|+.+|..+|
T Consensus 28 ~g~y~eAl~~Y~~Ai 42 (93)
T 1wfd_A 28 ESRYQQALVCYQEGI 42 (93)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHH
Confidence 344444444444443
No 302
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=29.93 E-value=1.7e+02 Score=21.55 Aligned_cols=25 Identities=20% Similarity=0.076 Sum_probs=13.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCc
Q 006562 524 GLALSSIGEYKKAEEAHLKAIQLDR 548 (640)
Q Consensus 524 a~~~~~~g~~~~A~~~~~~a~~~~~ 548 (640)
|..++..|+|-+|-+.++......|
T Consensus 8 ~~~lfn~g~~~eaHEvlE~~W~~~~ 32 (94)
T 2cwy_A 8 VLGLWRAGRYYEVHEVLEPYWLKAT 32 (94)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHhCCChHHHHHHHHHHHhhCC
Confidence 4445555666666666666555543
No 303
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=29.81 E-value=77 Score=31.71 Aligned_cols=47 Identities=21% Similarity=0.205 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHcCCC--------chHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006562 85 HKHVIRDCDKALQLDPT--------LLQAYILKGCAFSALGRKEEALSVWEKGYE 131 (640)
Q Consensus 85 ~~~Ai~~~~~al~~~P~--------~~~a~~~~g~~y~~~g~~~~A~~~~~~al~ 131 (640)
|+..+.+++.|+..-|. -.-|+..+|++|+-+|+|++|....+.++.
T Consensus 170 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allArvyL~~~~~~~A~~~a~~vi~ 224 (461)
T 3kez_A 170 YTEIISDLKNSTELLSGDFNKGKVNRWAAMTLLSRVYLYKGEYNEALTMAENAIK 224 (461)
T ss_dssp HHHHHHHHHHHHHHSCCSCCTTSCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccccCCCeeeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 35667777887776553 234899999999999999999998888843
No 304
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=28.51 E-value=89 Score=31.37 Aligned_cols=47 Identities=17% Similarity=0.113 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHcCCCc--------hHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006562 85 HKHVIRDCDKALQLDPTL--------LQAYILKGCAFSALGRKEEALSVWEKGYE 131 (640)
Q Consensus 85 ~~~Ai~~~~~al~~~P~~--------~~a~~~~g~~y~~~g~~~~A~~~~~~al~ 131 (640)
|+..+.+++.|+..-|.. .-|+..+|++|+-.|+|++|....+.++.
T Consensus 176 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~ 230 (477)
T 3mcx_A 176 YEQVVSDMSNALSGLRQETSNGYINYWAAQALLSRVYLNMGEYQKAYDAATDVIK 230 (477)
T ss_dssp HHHHHHHHHHHGGGSCSSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccccCCcCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 567788888888866542 33899999999999999999998888854
No 305
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=28.43 E-value=64 Score=23.35 Aligned_cols=22 Identities=9% Similarity=0.019 Sum_probs=10.2
Q ss_pred HHHHHHhhhcHHHHHHHHHHHH
Q 006562 75 RAFCYSQLELHKHVIRDCDKAL 96 (640)
Q Consensus 75 ~A~~~~~~g~~~~Ai~~~~~al 96 (640)
+|.-.-..|+|++|+..|..++
T Consensus 22 ~Ave~D~~g~y~eAl~lY~~Ai 43 (86)
T 4a5x_A 22 RAVELDSESRYPQALVCYQEGI 43 (86)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 3333344455555555544443
No 306
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=26.88 E-value=2.1e+02 Score=27.06 Aligned_cols=66 Identities=18% Similarity=0.137 Sum_probs=45.3
Q ss_pred CcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHccC-----cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 006562 515 ENKSAYTYLGLALSSIG--EYKKAEEAHLKAIQLD-----RNFLEAWGHLTQFYQDLANSEKALECLQQVLYI 580 (640)
Q Consensus 515 ~~~~~~~~la~~~~~~g--~~~~A~~~~~~a~~~~-----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 580 (640)
..|-++-++|.+-...- ....++..|.+++... ......|..+|..+++.+++.+|+..+-.+-..
T Consensus 253 rYPmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~V 325 (472)
T 3re2_A 253 TYPMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGYV 325 (472)
T ss_dssp TCHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hCchhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHHH
Confidence 45677777777765432 2233778888887652 334566777888888888888888888777655
No 307
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=25.16 E-value=1.5e+02 Score=21.38 Aligned_cols=33 Identities=15% Similarity=0.289 Sum_probs=26.3
Q ss_pred ccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 006562 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKED 411 (640)
Q Consensus 379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~ 411 (640)
..++.++..|.-++..++|.+|..+|+++....
T Consensus 51 ~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~t 83 (106)
T 2vkj_A 51 KKARSLIAEGKDLFETANYGEALVFFEKALNLS 83 (106)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHHHccc
Confidence 346677788888888999999999998887654
No 308
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=25.07 E-value=77 Score=23.31 Aligned_cols=14 Identities=14% Similarity=0.309 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHccc
Q 006562 53 SKAIRILDSLLAQS 66 (640)
Q Consensus 53 ~~Ai~~y~~ai~~~ 66 (640)
++|+.+..+|++.+
T Consensus 13 ~~Ai~lv~~Ave~D 26 (93)
T 1wfd_A 13 TAAVAVLKRAVELD 26 (93)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45666666665443
No 309
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=25.05 E-value=1.4e+02 Score=30.10 Aligned_cols=47 Identities=21% Similarity=0.077 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHcCCCc-----------hHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006562 85 HKHVIRDCDKALQLDPTL-----------LQAYILKGCAFSALGRKEEALSVWEKGYE 131 (640)
Q Consensus 85 ~~~Ai~~~~~al~~~P~~-----------~~a~~~~g~~y~~~g~~~~A~~~~~~al~ 131 (640)
|+..+.+++.|+..-|.. .-|+..+|++|+-+|+|++|....+.++.
T Consensus 174 y~~I~~DL~~A~~~Lp~~~~~~~~gr~tk~aA~allArvyL~~~~~~~A~~~a~~vi~ 231 (495)
T 3lew_A 174 YAQSINDLEEALELIPETYVRDAKHKIDNEVVLGILSRACLYARQWEKAKTYSDKLLA 231 (495)
T ss_dssp HHHHHHHHHHHHHHSCTTCCCSSTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccCcccCCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 456677788887765532 33899999999999999999999888853
No 310
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.79 E-value=53 Score=25.25 Aligned_cols=32 Identities=31% Similarity=0.404 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006562 85 HKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYE 131 (640)
Q Consensus 85 ~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~~~~A~~~~~~al~ 131 (640)
|++|.....++|.+|-. |+.++|+..|++++.
T Consensus 19 h~~AF~~Is~AL~~DE~---------------g~k~~Al~lYk~GI~ 50 (116)
T 2dl1_A 19 YKKAFLFVNKGLNTDEL---------------GQKEEAKNYYKQGIG 50 (116)
T ss_dssp HHHHHHHHHHHHHHHHH---------------TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhc---------------CCHHHHHHHHHHHHH
No 311
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=23.85 E-value=59 Score=25.25 Aligned_cols=52 Identities=13% Similarity=0.120 Sum_probs=33.2
Q ss_pred ccchhhhhccccccchhhHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 006562 14 NKTHKTICEIDELVRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQ 65 (640)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~Ai~~y~~ai~~ 65 (640)
.+..|-+--+.+-.+-...+++....-..+++++..|||..|...+......
T Consensus 39 ~D~~KRL~~LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~ 90 (118)
T 2yru_A 39 DDISRRLALLREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVD 90 (118)
T ss_dssp HHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Confidence 3343433333333333455666666667888888888999888888877653
No 312
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=22.36 E-value=3.9e+02 Score=25.91 Aligned_cols=29 Identities=7% Similarity=-0.024 Sum_probs=17.2
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 006562 583 RFSKAYHLRGLLLHGLGQHKKAIKDLSSG 611 (640)
Q Consensus 583 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a 611 (640)
.+...|..+|-.+++.+++.+|+..+..+
T Consensus 316 ~HvYPYtYlgGy~yR~~~~reAl~~WA~A 344 (550)
T 3u84_A 316 EHIYPYMYLAGYHCRNRNVREALQAWADT 344 (550)
T ss_dssp CCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCccceeecchhhhhcchHHHHHHHHHHH
Confidence 34455555666666666666666666554
No 313
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=22.14 E-value=1.1e+02 Score=21.91 Aligned_cols=11 Identities=18% Similarity=0.510 Sum_probs=5.9
Q ss_pred HHHHHHHHHHH
Q 006562 53 SKAIRILDSLL 63 (640)
Q Consensus 53 ~~Ai~~y~~ai 63 (640)
++|+.+..+|+
T Consensus 11 ~~A~~l~~~Av 21 (85)
T 2v6x_A 11 TKGIELVQKAI 21 (85)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45555555555
No 314
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=20.90 E-value=1.1e+02 Score=23.64 Aligned_cols=11 Identities=27% Similarity=0.283 Sum_probs=5.6
Q ss_pred HHHHHHHHHHH
Q 006562 53 SKAIRILDSLL 63 (640)
Q Consensus 53 ~~Ai~~y~~ai 63 (640)
++|+.+..+|+
T Consensus 16 ~kAi~lv~~Av 26 (117)
T 2cpt_A 16 QKAIDLASKAA 26 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 35555555554
No 315
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=20.14 E-value=1.5e+02 Score=29.65 Aligned_cols=46 Identities=17% Similarity=0.057 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHcCC-------------CchHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006562 86 KHVIRDCDKALQLDP-------------TLLQAYILKGCAFSALGRKEEALSVWEKGYE 131 (640)
Q Consensus 86 ~~Ai~~~~~al~~~P-------------~~~~a~~~~g~~y~~~g~~~~A~~~~~~al~ 131 (640)
+..+.+++.|+..-| +-.-|+..+|++|+-+|+|++|....+.++.
T Consensus 161 ~~I~~DL~~A~~~L~~~~~~~~~~~gr~tk~aA~aLlARvyL~~~~~~~A~~~a~~vi~ 219 (460)
T 3snx_A 161 QQIFDDLNLAQDYLTNYVRKGDGQKFKPNTDVVNGLMARAYLLTGQWGEAAKAAEAARK 219 (460)
T ss_dssp HHHHHHHHHHHHHTTTCCCCSGGGTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcccccCCccccCcccCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 445566666655322 2334899999999999999999999888853
Done!