BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 006565
         (640 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P25386|USO1_YEAST Intracellular protein transport protein USO1 OS=Saccharomyces
            cerevisiae (strain ATCC 204508 / S288c) GN=USO1 PE=1 SV=2
          Length = 1790

 Score = 36.2 bits (82), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 83/322 (25%), Positives = 152/322 (47%), Gaps = 57/322 (17%)

Query: 76   IDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSR 135
            ID +  E+ +  ++  SIE N++ LKK + D E+ K E + + D +        D+Y S+
Sbjct: 1003 IDSMSQEKENFQIERGSIEKNIEQLKKTISDLEQTKEEIISKSDSS-------KDEYESQ 1055

Query: 136  INNLQ----------GENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTK----QKAM 181
            I+ L+           EN++   K S L+KT + L+ E++ +K   +++ TK    +KA+
Sbjct: 1056 ISLLKEKLETATTANDENVN---KISELTKTREELEAELAAYKNLKNELETKLETSEKAL 1112

Query: 182  EDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIV 241
            + +V    E LK      E      ++Q  S +  +E  ++++     + K   E+ A  
Sbjct: 1113 K-EVKENEEHLKEEKIQLEKEATETKQQLNSLRANLESLEKEHEDLAAQLKKYEEQIA-- 1169

Query: 242  QERTSKEMQQREDV--LREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKM 299
                +KE Q  E++  L +E +ST  E  E +K+K  ++E   + + +       +E + 
Sbjct: 1170 ----NKERQYNEEISQLNDEITSTQQEN-ESIKKKNDELEGEVKAMKS------TSEEQS 1218

Query: 300  RSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQ 359
               + EI +  L+ KEL +K E           EA ++E  K       +SE  + +E+Q
Sbjct: 1219 NLKKSEIDALNLQIKELKKKNET---------NEASLLESIK-----SVESETVKIKELQ 1264

Query: 360  ERCKVAEKEAKKATELADRERA 381
            + C   EKE    +EL D+ +A
Sbjct: 1265 DECNFKEKE---VSELEDKLKA 1283


>sp|Q5U4E6|GOGA4_RAT Golgin subfamily A member 4 OS=Rattus norvegicus GN=Golga4 PE=1
           SV=2
          Length = 2259

 Score = 34.7 bits (78), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 112/237 (47%), Gaps = 32/237 (13%)

Query: 132 YTSRINNLQGENIS----LREKSS----SLSKTVDSL-KNEISDWKRKYDQVLTKQKAME 182
           +T R+ NL  ++ +    LREK      +L K  +SL +  I D   K  + L K++   
Sbjct: 673 WTERLQNLSQQHQAAVEELREKHQQEKDALLKEKESLFQAHIQDMNEKTLEKLDKKQMEL 732

Query: 183 DQVCSEI-EVLKSRSTAAEARLAAAR------EQALSAQEEVEEWKRKYGVAVREAKAAL 235
           + V SE+ E LK+R   AE  L+  R      +QAL A  E++E +R +    RE  +  
Sbjct: 733 ESVSSELSEALKARDQLAE-ELSVLRGDADQMKQALEA--ELQEQRRHHQ---REVDSIS 786

Query: 236 EKAAIVQERTSKEMQQREDVLREEFS---STLAEKEEEMKEKATKIEHAEQCLTTLRLEL 292
            +  I+  RT K        L++E S     L EK+E ++E+  ++ + E CL     EL
Sbjct: 787 GQQEIIVRRTEK-------ALKDEISQLGGLLKEKDEHLQERQAQVHNLEACLQKSAEEL 839

Query: 293 KAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYK 349
           + A +K+   + + S+   +T    E+L  +  K    E E  ++ +  V +E + K
Sbjct: 840 QQALAKLDLLQAQQSTTHAQTGAYEEQLAQMQQKVSDLETEKNLLTKQVVEVETQKK 896


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.307    0.122    0.312 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 196,565,891
Number of Sequences: 539616
Number of extensions: 7716616
Number of successful extensions: 80856
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 4712
Number of HSP's that attempted gapping in prelim test: 49488
Number of HSP's gapped (non-prelim): 16804
length of query: 640
length of database: 191,569,459
effective HSP length: 124
effective length of query: 516
effective length of database: 124,657,075
effective search space: 64323050700
effective search space used: 64323050700
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 64 (29.3 bits)