Query 006565
Match_columns 640
No_of_seqs 79 out of 81
Neff 5.3
Searched_HMMs 46136
Date Thu Mar 28 11:15:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006565.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006565hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1196 Smc Chromosome segrega 99.7 2.3E-13 4.9E-18 165.8 46.3 314 186-505 164-499 (1163)
2 TIGR02169 SMC_prok_A chromosom 99.6 7.9E-12 1.7E-16 150.6 48.6 316 186-508 162-504 (1164)
3 TIGR02168 SMC_prok_B chromosom 99.6 1.3E-11 2.7E-16 148.3 47.4 295 186-490 164-485 (1179)
4 PRK02224 chromosome segregatio 99.6 3.2E-09 7E-14 126.0 63.0 106 348-455 532-638 (880)
5 PRK02224 chromosome segregatio 99.6 6.7E-09 1.4E-13 123.4 61.5 142 370-514 533-687 (880)
6 TIGR02169 SMC_prok_A chromosom 99.5 1.3E-09 2.9E-14 131.5 49.7 308 195-506 164-488 (1164)
7 TIGR02168 SMC_prok_B chromosom 99.4 1.2E-06 2.6E-11 105.8 65.4 24 599-624 965-988 (1179)
8 PRK03918 chromosome segregatio 99.4 1.5E-06 3.3E-11 103.2 64.9 12 29-40 110-121 (880)
9 TIGR00606 rad50 rad50. This fa 99.4 1.2E-07 2.6E-12 117.6 55.2 487 7-526 617-1133(1311)
10 PRK03918 chromosome segregatio 99.4 1.8E-06 3.9E-11 102.6 62.7 67 439-506 635-706 (880)
11 KOG0161 Myosin class II heavy 99.3 2.2E-06 4.7E-11 107.7 62.4 438 77-526 1255-1748(1930)
12 TIGR00606 rad50 rad50. This fa 99.3 1.1E-06 2.3E-11 109.3 59.3 83 148-234 702-784 (1311)
13 PF05701 WEMBL: Weak chloropla 99.3 4.3E-06 9.4E-11 94.9 57.2 298 193-497 115-424 (522)
14 KOG0161 Myosin class II heavy 99.3 1E-05 2.2E-10 102.0 64.5 407 118-531 906-1331(1930)
15 PF12128 DUF3584: Protein of u 99.3 2E-05 4.4E-10 97.3 65.7 154 9-167 178-339 (1201)
16 PF02841 GBP_C: Guanylate-bind 99.2 2.3E-10 4.9E-15 120.5 16.6 155 2-185 119-277 (297)
17 PF10174 Cast: RIM-binding pro 99.2 1.3E-05 2.9E-10 94.2 57.2 194 126-342 230-423 (775)
18 COG1196 Smc Chromosome segrega 99.2 5.2E-05 1.1E-09 93.5 65.6 105 128-232 377-498 (1163)
19 KOG0250 DNA repair protein RAD 99.2 4.3E-05 9.3E-10 90.9 59.5 468 26-509 154-812 (1074)
20 KOG4674 Uncharacterized conser 99.1 3.8E-05 8.3E-10 95.7 56.8 356 94-451 635-1032(1822)
21 PF10174 Cast: RIM-binding pro 99.1 9.1E-05 2E-09 87.3 58.5 187 119-314 237-423 (775)
22 PF05701 WEMBL: Weak chloropla 99.1 9.6E-05 2.1E-09 84.1 52.6 164 343-508 278-442 (522)
23 PF00261 Tropomyosin: Tropomyo 99.0 3.8E-07 8.2E-12 93.4 29.4 227 270-505 2-229 (237)
24 PRK04863 mukB cell division pr 99.0 4.3E-05 9.2E-10 95.6 51.3 149 69-240 172-339 (1486)
25 PRK01156 chromosome segregatio 99.0 0.00029 6.3E-09 84.6 62.8 28 301-328 473-500 (895)
26 KOG4674 Uncharacterized conser 98.9 0.00082 1.8E-08 84.3 59.6 168 95-263 912-1086(1822)
27 PF00261 Tropomyosin: Tropomyo 98.8 7.9E-06 1.7E-10 83.8 29.9 29 465-493 203-231 (237)
28 PRK01156 chromosome segregatio 98.8 0.0012 2.6E-08 79.4 66.4 6 47-52 134-139 (895)
29 KOG0996 Structural maintenance 98.8 0.00026 5.6E-09 84.8 45.2 328 131-503 271-607 (1293)
30 KOG2037 Guanylate-binding prot 98.8 1E-06 2.2E-11 99.6 23.8 270 1-418 222-491 (552)
31 PF12128 DUF3584: Protein of u 98.7 0.0026 5.7E-08 79.1 59.7 42 155-196 352-393 (1201)
32 KOG0250 DNA repair protein RAD 98.7 5.3E-05 1.1E-09 90.2 36.5 249 201-501 214-464 (1074)
33 KOG0977 Nuclear envelope prote 98.7 8.1E-05 1.8E-09 84.1 36.3 306 126-456 41-361 (546)
34 PF00038 Filament: Intermediat 98.7 0.00039 8.6E-09 73.3 39.1 287 134-438 11-304 (312)
35 PRK04778 septation ring format 98.7 0.0016 3.4E-08 75.0 47.0 159 110-278 19-181 (569)
36 KOG0996 Structural maintenance 98.7 0.00065 1.4E-08 81.5 43.5 311 116-453 263-593 (1293)
37 KOG0964 Structural maintenance 98.7 0.0003 6.5E-09 82.8 39.8 50 186-235 162-211 (1200)
38 PF01576 Myosin_tail_1: Myosin 98.6 6E-09 1.3E-13 123.9 0.0 381 94-481 101-504 (859)
39 PF00038 Filament: Intermediat 98.6 0.0017 3.7E-08 68.6 42.3 272 194-480 18-304 (312)
40 PF07888 CALCOCO1: Calcium bin 98.6 0.0034 7.4E-08 71.4 46.9 47 467-513 411-457 (546)
41 PF07888 CALCOCO1: Calcium bin 98.6 0.0036 7.8E-08 71.2 46.6 76 298-373 277-352 (546)
42 KOG0994 Extracellular matrix g 98.6 0.0046 1E-07 74.1 45.1 41 194-235 1317-1357(1758)
43 PF01576 Myosin_tail_1: Myosin 98.5 1.7E-08 3.7E-13 120.1 0.0 297 64-376 185-498 (859)
44 PF02841 GBP_C: Guanylate-bind 98.5 4.2E-05 9.2E-10 80.8 24.2 206 4-229 38-268 (297)
45 PF06160 EzrA: Septation ring 98.4 0.0081 1.8E-07 69.1 49.6 162 109-280 14-179 (560)
46 KOG0994 Extracellular matrix g 98.4 0.0038 8.3E-08 74.8 39.6 298 109-429 1415-1737(1758)
47 KOG0933 Structural maintenance 98.3 0.011 2.4E-07 70.4 41.4 247 199-456 675-932 (1174)
48 KOG0933 Structural maintenance 98.3 0.019 4.2E-07 68.5 56.4 35 10-44 273-307 (1174)
49 KOG0977 Nuclear envelope prote 98.3 0.011 2.3E-07 67.4 38.8 296 209-510 43-386 (546)
50 PHA02562 46 endonuclease subun 98.3 0.0067 1.4E-07 68.9 37.1 72 259-330 210-281 (562)
51 KOG0976 Rho/Rac1-interacting s 98.3 0.022 4.8E-07 66.4 48.9 94 94-187 66-159 (1265)
52 KOG4643 Uncharacterized coiled 98.2 0.033 7.1E-07 66.6 46.8 343 126-473 169-558 (1195)
53 KOG0964 Structural maintenance 98.2 0.035 7.7E-07 66.2 57.1 221 293-517 674-898 (1200)
54 PRK04863 mukB cell division pr 98.2 0.057 1.2E-06 68.5 50.2 47 11-57 210-256 (1486)
55 PRK11637 AmiB activator; Provi 98.1 0.0041 9E-08 69.0 30.0 81 268-348 46-126 (428)
56 PHA02562 46 endonuclease subun 98.1 0.0029 6.2E-08 71.8 28.7 10 166-175 114-123 (562)
57 KOG0971 Microtubule-associated 97.9 0.1 2.2E-06 61.9 39.6 264 186-480 275-546 (1243)
58 KOG1003 Actin filament-coating 97.9 0.017 3.6E-07 57.8 26.3 184 190-385 14-197 (205)
59 KOG0971 Microtubule-associated 97.8 0.14 2.9E-06 61.0 42.3 263 217-492 233-516 (1243)
60 PF12718 Tropomyosin_1: Tropom 97.8 0.0032 6.9E-08 60.3 20.2 138 212-358 4-141 (143)
61 PRK04778 septation ring format 97.8 0.12 2.5E-06 59.9 52.2 116 293-408 306-431 (569)
62 PF15070 GOLGA2L5: Putative go 97.8 0.12 2.7E-06 60.2 40.5 73 317-389 159-231 (617)
63 PF09726 Macoilin: Transmembra 97.8 0.03 6.5E-07 66.1 31.2 225 264-503 420-645 (697)
64 PF05557 MAD: Mitotic checkpoi 97.8 1.3E-05 2.7E-10 94.3 3.6 147 95-241 68-218 (722)
65 PF09726 Macoilin: Transmembra 97.8 0.03 6.4E-07 66.1 31.2 93 260-352 423-515 (697)
66 KOG0976 Rho/Rac1-interacting s 97.8 0.17 3.7E-06 59.4 49.8 110 124-235 45-154 (1265)
67 KOG0612 Rho-associated, coiled 97.7 0.23 5.1E-06 60.8 41.3 189 163-367 462-651 (1317)
68 KOG1003 Actin filament-coating 97.7 0.081 1.8E-06 53.1 27.1 120 389-510 82-202 (205)
69 KOG1029 Endocytic adaptor prot 97.6 0.27 6E-06 57.7 36.7 190 183-379 320-512 (1118)
70 KOG4643 Uncharacterized coiled 97.6 0.35 7.5E-06 58.3 49.3 254 88-358 177-462 (1195)
71 PF05622 HOOK: HOOK protein; 97.6 3E-05 6.5E-10 91.1 2.5 30 79-108 184-213 (713)
72 PF12718 Tropomyosin_1: Tropom 97.5 0.022 4.7E-07 54.6 20.5 55 329-383 77-131 (143)
73 COG0419 SbcC ATPase involved i 97.5 0.51 1.1E-05 57.5 65.1 22 40-63 131-152 (908)
74 PF05483 SCP-1: Synaptonemal c 97.4 0.41 9E-06 55.7 61.1 97 131-227 237-336 (786)
75 COG1340 Uncharacterized archae 97.4 0.29 6.2E-06 52.2 36.2 222 257-488 29-257 (294)
76 COG1340 Uncharacterized archae 97.3 0.34 7.3E-06 51.7 34.4 89 405-495 161-250 (294)
77 PF05557 MAD: Mitotic checkpoi 97.3 0.00015 3.2E-09 85.4 3.5 233 184-418 175-429 (722)
78 COG4942 Membrane-bound metallo 97.3 0.45 9.9E-06 53.0 32.9 72 270-341 39-110 (420)
79 PF09728 Taxilin: Myosin-like 97.3 0.38 8.2E-06 51.8 39.0 104 312-422 203-306 (309)
80 PF05667 DUF812: Protein of un 97.3 0.13 2.7E-06 59.9 26.8 37 439-476 493-529 (594)
81 TIGR03185 DNA_S_dndD DNA sulfu 97.3 0.66 1.4E-05 54.5 38.3 66 108-173 188-255 (650)
82 COG4942 Membrane-bound metallo 97.2 0.58 1.3E-05 52.1 30.0 67 283-349 38-104 (420)
83 PF09789 DUF2353: Uncharacteri 97.2 0.2 4.3E-06 54.1 25.2 170 278-456 4-180 (319)
84 TIGR03185 DNA_S_dndD DNA sulfu 97.2 0.83 1.8E-05 53.7 37.6 63 156-230 183-245 (650)
85 KOG0018 Structural maintenance 97.1 1.2 2.6E-05 54.4 40.0 154 192-361 193-346 (1141)
86 KOG4673 Transcription factor T 97.1 0.94 2E-05 52.9 47.9 308 191-511 406-749 (961)
87 PRK11281 hypothetical protein; 97.1 0.73 1.6E-05 57.3 32.1 50 459-508 285-334 (1113)
88 PF10473 CENP-F_leu_zip: Leuci 97.0 0.12 2.7E-06 49.5 19.6 108 365-474 8-116 (140)
89 PF10473 CENP-F_leu_zip: Leuci 97.0 0.12 2.6E-06 49.6 19.5 120 220-344 1-120 (140)
90 KOG0612 Rho-associated, coiled 97.0 1.6 3.4E-05 54.0 45.2 30 289-318 622-651 (1317)
91 PF05622 HOOK: HOOK protein; 97.0 0.00097 2.1E-08 78.6 6.5 14 56-69 79-92 (713)
92 PF05667 DUF812: Protein of un 97.0 1.2 2.5E-05 52.1 33.0 89 265-358 450-538 (594)
93 PRK10929 putative mechanosensi 97.0 1.3 2.7E-05 55.2 32.4 101 407-508 213-314 (1109)
94 COG1579 Zn-ribbon protein, pos 96.9 0.29 6.4E-06 50.8 22.8 20 548-570 205-224 (239)
95 COG4372 Uncharacterized protei 96.9 0.92 2E-05 49.9 31.9 95 264-358 76-170 (499)
96 PF06160 EzrA: Septation ring 96.9 1.3 2.7E-05 51.4 52.4 85 327-411 346-430 (560)
97 PRK09039 hypothetical protein; 96.9 0.29 6.3E-06 53.3 23.6 13 604-616 296-308 (343)
98 KOG0962 DNA repair protein RAD 96.9 2.2 4.7E-05 53.4 47.2 82 29-110 633-720 (1294)
99 PRK09039 hypothetical protein; 96.9 0.32 6.9E-06 53.0 23.7 9 608-616 310-318 (343)
100 COG1579 Zn-ribbon protein, pos 96.8 0.71 1.5E-05 48.0 24.4 9 496-504 165-173 (239)
101 PF09730 BicD: Microtubule-ass 96.8 1.8 4E-05 51.4 50.8 71 172-242 19-89 (717)
102 PF04849 HAP1_N: HAP1 N-termin 96.8 0.7 1.5E-05 49.6 24.8 189 184-373 79-303 (306)
103 PF15070 GOLGA2L5: Putative go 96.8 1.8 4E-05 50.8 38.9 31 476-506 282-312 (617)
104 PF14662 CCDC155: Coiled-coil 96.7 0.78 1.7E-05 46.1 27.1 63 412-476 119-182 (193)
105 KOG0946 ER-Golgi vesicle-tethe 96.7 2.1 4.6E-05 50.9 33.4 100 121-245 614-715 (970)
106 KOG0995 Centromere-associated 96.7 1.8 3.9E-05 49.7 54.0 192 22-234 120-327 (581)
107 KOG0946 ER-Golgi vesicle-tethe 96.7 2.3 5E-05 50.7 29.7 100 274-373 846-945 (970)
108 KOG0978 E3 ubiquitin ligase in 96.6 2.4 5.1E-05 50.2 53.6 136 374-518 489-625 (698)
109 PRK11281 hypothetical protein; 96.5 3.7 8E-05 51.4 43.8 118 197-315 124-252 (1113)
110 TIGR01005 eps_transp_fam exopo 96.5 0.75 1.6E-05 54.7 25.6 36 257-292 189-224 (754)
111 KOG1029 Endocytic adaptor prot 96.5 2.8 6E-05 49.8 35.9 74 327-400 432-505 (1118)
112 KOG0962 DNA repair protein RAD 96.5 4 8.6E-05 51.2 54.4 189 8-230 580-776 (1294)
113 TIGR03007 pepcterm_ChnLen poly 96.5 0.42 9.2E-06 53.8 22.1 34 257-290 156-189 (498)
114 PF13514 AAA_27: AAA domain 96.4 4.1 9E-05 50.9 51.6 134 72-206 457-644 (1111)
115 TIGR02680 conserved hypothetic 96.4 4.9 0.00011 51.4 36.3 13 96-108 238-250 (1353)
116 COG4372 Uncharacterized protei 96.4 2.2 4.7E-05 47.1 32.9 120 200-338 59-178 (499)
117 KOG0980 Actin-binding protein 96.4 3.6 7.9E-05 49.5 33.5 9 109-117 234-242 (980)
118 TIGR03007 pepcterm_ChnLen poly 96.3 0.2 4.4E-06 56.4 18.6 75 141-232 161-235 (498)
119 PF07926 TPR_MLP1_2: TPR/MLP1/ 96.3 0.74 1.6E-05 43.4 19.3 51 340-390 39-89 (132)
120 TIGR01843 type_I_hlyD type I s 96.3 1.4 3.1E-05 47.8 24.1 15 360-374 165-179 (423)
121 PF05911 DUF869: Plant protein 96.2 4.4 9.5E-05 48.8 34.0 47 464-510 263-309 (769)
122 PF15619 Lebercilin: Ciliary p 96.1 1.8 3.8E-05 43.8 24.6 29 392-420 122-150 (194)
123 PF05010 TACC: Transforming ac 96.1 1.9 4.1E-05 44.1 28.9 89 289-380 68-156 (207)
124 PF09728 Taxilin: Myosin-like 96.1 2.6 5.6E-05 45.5 41.2 247 85-358 12-277 (309)
125 PF04849 HAP1_N: HAP1 N-termin 96.1 2.6 5.7E-05 45.3 25.9 24 203-226 57-80 (306)
126 KOG4593 Mitotic checkpoint pro 96.1 4.3 9.3E-05 47.8 52.3 113 77-196 108-220 (716)
127 PRK10929 putative mechanosensi 96.1 6.2 0.00014 49.4 43.1 57 399-456 337-395 (1109)
128 PF09787 Golgin_A5: Golgin sub 96.0 4.1 8.8E-05 46.8 27.4 172 132-317 205-382 (511)
129 KOG0018 Structural maintenance 95.9 6.6 0.00014 48.3 48.3 114 126-239 226-341 (1141)
130 PF05911 DUF869: Plant protein 95.8 6.4 0.00014 47.5 32.7 129 287-415 621-760 (769)
131 KOG0243 Kinesin-like protein [ 95.8 7.3 0.00016 48.0 29.7 153 270-429 412-573 (1041)
132 PF14662 CCDC155: Coiled-coil 95.8 2.6 5.5E-05 42.6 27.5 172 308-485 12-184 (193)
133 TIGR00634 recN DNA repair prot 95.7 5 0.00011 46.5 26.2 44 187-230 154-197 (563)
134 PF07926 TPR_MLP1_2: TPR/MLP1/ 95.7 1.6 3.5E-05 41.1 18.4 44 313-356 5-48 (132)
135 PF13870 DUF4201: Domain of un 95.6 2.7 5.8E-05 41.3 23.5 131 267-397 4-135 (177)
136 PF05483 SCP-1: Synaptonemal c 95.6 6.9 0.00015 46.1 62.8 414 86-512 301-764 (786)
137 PF09789 DUF2353: Uncharacteri 95.5 4.1 8.9E-05 44.2 23.0 216 142-385 3-228 (319)
138 PF08317 Spc7: Spc7 kinetochor 95.5 4.4 9.6E-05 43.7 28.4 137 373-510 148-292 (325)
139 KOG4673 Transcription factor T 95.5 7 0.00015 46.0 46.9 299 41-348 288-653 (961)
140 TIGR03017 EpsF chain length de 95.5 5.2 0.00011 44.4 24.9 35 257-291 166-200 (444)
141 KOG0979 Structural maintenance 95.4 9.2 0.0002 46.8 28.9 163 257-420 190-357 (1072)
142 TIGR01005 eps_transp_fam exopo 95.4 1.7 3.7E-05 51.8 21.9 74 142-232 195-268 (754)
143 KOG0978 E3 ubiquitin ligase in 95.4 8.2 0.00018 45.9 52.7 45 439-484 561-605 (698)
144 PF09755 DUF2046: Uncharacteri 95.4 5 0.00011 43.3 27.5 166 275-462 26-202 (310)
145 PRK10698 phage shock protein P 95.3 4.2 9.1E-05 41.8 21.7 113 109-235 27-147 (222)
146 PF13514 AAA_27: AAA domain 95.2 12 0.00027 46.8 57.8 32 475-506 942-973 (1111)
147 TIGR00634 recN DNA repair prot 95.2 8.3 0.00018 44.7 25.8 185 157-350 150-340 (563)
148 PF09787 Golgin_A5: Golgin sub 95.0 8.6 0.00019 44.2 36.0 205 298-510 208-429 (511)
149 KOG0980 Actin-binding protein 95.0 11 0.00025 45.5 39.4 14 613-626 729-742 (980)
150 KOG4593 Mitotic checkpoint pro 95.0 10 0.00022 44.8 54.1 111 109-226 87-197 (716)
151 KOG0963 Transcription factor/C 94.8 11 0.00023 44.1 42.5 113 394-508 234-358 (629)
152 PF13851 GAS: Growth-arrest sp 94.8 5.2 0.00011 40.5 23.3 70 298-367 13-83 (201)
153 KOG0249 LAR-interacting protei 94.7 7.3 0.00016 46.1 23.1 107 188-301 22-130 (916)
154 PF14915 CCDC144C: CCDC144C pr 94.7 7.4 0.00016 41.7 40.9 196 257-456 58-261 (305)
155 TIGR03017 EpsF chain length de 94.6 6.6 0.00014 43.6 22.3 31 142-172 172-202 (444)
156 PF05010 TACC: Transforming ac 94.5 6.4 0.00014 40.3 29.9 106 252-367 6-111 (207)
157 KOG0963 Transcription factor/C 94.4 13 0.00029 43.4 45.0 37 351-387 240-276 (629)
158 KOG0243 Kinesin-like protein [ 94.4 18 0.00039 44.8 30.3 34 315-348 480-513 (1041)
159 PF15619 Lebercilin: Ciliary p 94.3 6.7 0.00015 39.6 26.4 23 434-456 121-144 (194)
160 PF00769 ERM: Ezrin/radixin/mo 93.9 4.9 0.00011 42.0 18.1 116 281-396 3-118 (246)
161 PF10481 CENP-F_N: Cenp-F N-te 93.6 9.3 0.0002 40.6 19.2 109 233-346 15-130 (307)
162 KOG0995 Centromere-associated 93.6 18 0.00039 42.0 45.4 26 257-282 296-321 (581)
163 PF12795 MscS_porin: Mechanose 93.2 12 0.00025 38.7 26.4 49 254-303 17-65 (240)
164 PF08317 Spc7: Spc7 kinetochor 93.2 15 0.00032 39.8 28.9 13 489-501 278-290 (325)
165 PRK10246 exonuclease subunit S 93.1 31 0.00066 43.2 54.3 34 135-168 448-481 (1047)
166 PRK10869 recombination and rep 93.0 22 0.00048 41.4 25.3 43 281-323 266-308 (553)
167 COG3883 Uncharacterized protei 93.0 14 0.00031 39.1 26.2 162 222-389 38-205 (265)
168 PF00769 ERM: Ezrin/radixin/mo 92.8 8.7 0.00019 40.1 18.0 117 270-386 6-122 (246)
169 KOG0979 Structural maintenance 92.5 34 0.00073 42.3 29.6 42 185-226 179-220 (1072)
170 PF11932 DUF3450: Protein of u 92.5 7.3 0.00016 40.4 17.0 73 365-438 26-98 (251)
171 PF08614 ATG16: Autophagy prot 92.5 2 4.2E-05 43.0 12.3 85 260-344 93-177 (194)
172 PF11932 DUF3450: Protein of u 92.4 3.8 8.2E-05 42.5 14.8 62 410-473 43-105 (251)
173 COG4717 Uncharacterized conser 92.4 33 0.00071 41.8 31.4 93 250-342 552-658 (984)
174 PF10498 IFT57: Intra-flagella 92.3 2.7 5.8E-05 46.3 14.1 131 160-304 189-322 (359)
175 PF09755 DUF2046: Uncharacteri 91.8 22 0.00048 38.5 33.9 149 301-456 81-241 (310)
176 PF13851 GAS: Growth-arrest sp 91.7 16 0.00036 37.0 24.2 51 270-320 28-78 (201)
177 PF10168 Nup88: Nuclear pore c 91.7 25 0.00053 42.4 22.1 52 283-334 565-616 (717)
178 PF12325 TMF_TATA_bd: TATA ele 91.6 6.6 0.00014 36.9 13.9 40 294-333 20-59 (120)
179 PF12325 TMF_TATA_bd: TATA ele 91.6 7.5 0.00016 36.5 14.2 35 465-499 74-108 (120)
180 PF06005 DUF904: Protein of un 91.5 3.7 8E-05 35.2 11.1 67 291-357 5-71 (72)
181 COG2433 Uncharacterized conser 91.3 10 0.00023 44.2 17.6 44 394-438 421-464 (652)
182 PF04111 APG6: Autophagy prote 91.3 4.1 9E-05 44.0 13.9 35 387-421 98-132 (314)
183 PF04111 APG6: Autophagy prote 91.1 4.2 9.1E-05 43.9 13.7 25 483-507 109-133 (314)
184 PF08614 ATG16: Autophagy prot 91.0 4.6 0.0001 40.4 13.1 86 270-355 82-167 (194)
185 PF04012 PspA_IM30: PspA/IM30 90.8 20 0.00043 36.2 21.9 130 110-245 13-142 (221)
186 PF06818 Fez1: Fez1; InterPro 90.7 21 0.00046 36.4 19.4 76 306-381 12-87 (202)
187 PF15254 CCDC14: Coiled-coil d 90.4 47 0.001 40.0 22.0 151 271-421 389-555 (861)
188 PRK10246 exonuclease subunit S 90.3 59 0.0013 40.8 61.1 26 463-488 826-851 (1047)
189 KOG1899 LAR transmembrane tyro 90.2 45 0.00097 39.3 21.1 100 241-345 109-215 (861)
190 PF10498 IFT57: Intra-flagella 90.0 17 0.00036 40.2 17.4 105 218-330 216-320 (359)
191 PF09730 BicD: Microtubule-ass 90.0 51 0.0011 39.7 40.8 103 297-402 359-461 (717)
192 PF10186 Atg14: UV radiation r 89.9 26 0.00057 36.3 18.2 22 408-429 62-83 (302)
193 PF15294 Leu_zip: Leucine zipp 89.7 32 0.00069 36.8 21.8 192 97-292 32-238 (278)
194 TIGR01000 bacteriocin_acc bact 89.5 41 0.00089 37.9 24.1 24 480-503 291-314 (457)
195 KOG0249 LAR-interacting protei 89.4 44 0.00095 40.0 20.5 44 264-307 30-73 (916)
196 COG4477 EzrA Negative regulato 89.3 48 0.001 38.4 43.9 115 295-409 314-431 (570)
197 PF10168 Nup88: Nuclear pore c 89.2 26 0.00056 42.2 19.4 28 180-207 558-585 (717)
198 PF12795 MscS_porin: Mechanose 89.1 30 0.00065 35.7 23.2 56 341-396 80-135 (240)
199 PF06008 Laminin_I: Laminin Do 89.0 32 0.00069 35.9 32.0 18 327-344 89-106 (264)
200 PF13870 DUF4201: Domain of un 89.0 25 0.00053 34.6 23.0 117 214-334 5-128 (177)
201 PRK10869 recombination and rep 88.5 56 0.0012 38.1 27.3 42 188-229 151-192 (553)
202 PRK15422 septal ring assembly 88.5 4.5 9.8E-05 35.3 9.2 66 292-357 6-71 (79)
203 PF10146 zf-C4H2: Zinc finger- 88.4 19 0.00041 37.5 15.4 45 387-432 59-103 (230)
204 PF06705 SF-assemblin: SF-asse 88.1 35 0.00077 35.3 29.2 68 112-179 62-131 (247)
205 PF05266 DUF724: Protein of un 87.9 18 0.0004 36.4 14.6 82 270-351 104-185 (190)
206 COG4026 Uncharacterized protei 87.7 8.9 0.00019 39.7 12.2 81 284-364 129-209 (290)
207 PF06785 UPF0242: Uncharacteri 87.6 48 0.001 36.3 19.9 21 359-379 147-167 (401)
208 PF15066 CAGE1: Cancer-associa 87.2 61 0.0013 37.0 27.5 103 353-456 390-497 (527)
209 KOG2037 Guanylate-binding prot 86.9 0.99 2.1E-05 52.1 5.7 350 50-510 188-550 (552)
210 COG3883 Uncharacterized protei 86.8 47 0.001 35.3 29.1 60 282-341 37-96 (265)
211 KOG0804 Cytoplasmic Zn-finger 86.6 40 0.00087 38.3 17.4 30 312-341 348-377 (493)
212 TIGR01010 BexC_CtrB_KpsE polys 86.3 32 0.00069 37.4 16.6 30 261-290 169-198 (362)
213 PF06785 UPF0242: Uncharacteri 86.3 57 0.0012 35.8 19.6 80 291-370 93-172 (401)
214 KOG4360 Uncharacterized coiled 86.2 60 0.0013 37.5 18.6 91 272-362 208-298 (596)
215 PRK09841 cryptic autophosphory 86.1 39 0.00084 40.5 18.6 35 257-291 262-296 (726)
216 COG2433 Uncharacterized conser 85.9 14 0.0003 43.2 13.9 102 411-518 424-527 (652)
217 PRK11519 tyrosine kinase; Prov 85.9 48 0.001 39.7 19.1 35 257-291 262-296 (719)
218 PRK10884 SH3 domain-containing 85.8 13 0.00028 38.0 12.4 58 409-470 93-150 (206)
219 PF09744 Jnk-SapK_ap_N: JNK_SA 85.7 38 0.00083 33.3 15.2 131 55-186 11-148 (158)
220 PF02050 FliJ: Flagellar FliJ 85.3 25 0.00054 30.8 16.2 102 387-490 4-111 (123)
221 PF14073 Cep57_CLD: Centrosome 85.1 45 0.00097 33.5 22.2 95 292-396 6-100 (178)
222 PF05384 DegS: Sensor protein 84.9 42 0.00091 33.1 21.4 123 319-456 28-152 (159)
223 TIGR02680 conserved hypothetic 84.9 1.3E+02 0.0029 38.9 62.0 46 306-351 737-782 (1353)
224 TIGR01000 bacteriocin_acc bact 84.8 74 0.0016 35.8 25.4 27 394-420 290-316 (457)
225 PF10146 zf-C4H2: Zinc finger- 84.6 42 0.00091 34.9 15.6 49 381-429 39-87 (230)
226 TIGR02977 phageshock_pspA phag 84.5 50 0.0011 33.7 24.1 126 114-245 18-143 (219)
227 PF09738 DUF2051: Double stran 84.4 22 0.00047 38.5 13.9 86 305-390 78-163 (302)
228 PF11559 ADIP: Afadin- and alp 84.0 40 0.00087 32.1 18.6 27 392-418 123-149 (151)
229 COG5185 HEC1 Protein involved 83.2 94 0.002 35.7 43.9 97 131-235 268-364 (622)
230 smart00787 Spc7 Spc7 kinetocho 82.6 78 0.0017 34.4 23.0 17 192-208 68-84 (312)
231 PF14915 CCDC144C: CCDC144C pr 82.6 77 0.0017 34.3 39.3 28 146-173 4-31 (305)
232 PF12777 MT: Microtubule-bindi 82.5 79 0.0017 34.4 24.3 44 202-245 2-45 (344)
233 COG4717 Uncharacterized conser 82.5 1.3E+02 0.0029 37.0 35.4 46 465-510 810-855 (984)
234 PF13166 AAA_13: AAA domain 82.4 1.1E+02 0.0024 36.1 26.5 46 465-510 423-468 (712)
235 PF04582 Reo_sigmaC: Reovirus 82.2 2.6 5.6E-05 45.8 5.9 116 403-520 50-173 (326)
236 KOG1853 LIS1-interacting prote 82.2 73 0.0016 33.8 23.5 26 281-306 25-50 (333)
237 KOG4360 Uncharacterized coiled 81.5 1.1E+02 0.0024 35.4 19.0 110 264-373 193-302 (596)
238 PF11559 ADIP: Afadin- and alp 80.7 54 0.0012 31.3 15.1 78 415-494 51-129 (151)
239 COG3206 GumC Uncharacterized p 79.8 1.1E+02 0.0024 34.4 22.8 214 126-365 180-399 (458)
240 PF07200 Mod_r: Modifier of ru 79.8 57 0.0012 31.0 16.8 140 312-454 8-148 (150)
241 PF12949 HeH: HeH/LEM domain; 79.7 1.2 2.6E-05 33.1 1.6 33 597-633 2-34 (35)
242 KOG0804 Cytoplasmic Zn-finger 79.7 1.1E+02 0.0025 34.8 17.4 70 277-346 340-410 (493)
243 KOG4438 Centromere-associated 79.5 1.2E+02 0.0025 34.5 32.4 260 253-517 150-410 (446)
244 PF12329 TMF_DNA_bd: TATA elem 79.3 29 0.00062 29.8 10.2 68 442-510 3-70 (74)
245 PF02037 SAP: SAP domain; Int 79.2 3.3 7.1E-05 30.4 3.9 34 596-635 1-34 (35)
246 PF04012 PspA_IM30: PspA/IM30 78.9 77 0.0017 32.0 22.4 92 335-429 26-118 (221)
247 PF09304 Cortex-I_coil: Cortex 78.5 57 0.0012 30.2 15.6 65 304-368 9-73 (107)
248 KOG0999 Microtubule-associated 78.4 1.4E+02 0.0031 34.9 42.8 220 155-389 8-251 (772)
249 smart00787 Spc7 Spc7 kinetocho 78.2 1.1E+02 0.0023 33.3 29.5 13 274-286 75-87 (312)
250 PRK15422 septal ring assembly 77.6 48 0.001 29.1 11.0 71 439-510 6-76 (79)
251 COG3074 Uncharacterized protei 77.5 39 0.00084 29.1 10.1 62 294-355 8-76 (79)
252 PF15450 DUF4631: Domain of un 77.1 1.5E+02 0.0033 34.4 40.8 129 14-161 143-285 (531)
253 PF09304 Cortex-I_coil: Cortex 77.0 62 0.0014 30.0 14.8 60 394-454 15-75 (107)
254 PF05278 PEARLI-4: Arabidopsis 77.0 89 0.0019 33.4 15.0 67 442-509 198-264 (269)
255 PF05278 PEARLI-4: Arabidopsis 77.0 88 0.0019 33.4 15.0 11 264-274 168-178 (269)
256 KOG3091 Nuclear pore complex, 76.5 1.3E+02 0.0028 34.7 16.9 68 361-428 335-402 (508)
257 KOG4809 Rab6 GTPase-interactin 75.7 1.7E+02 0.0037 34.3 29.3 33 463-495 525-557 (654)
258 PF10212 TTKRSYEDQ: Predicted 75.0 1.7E+02 0.0037 34.0 22.9 22 159-180 265-296 (518)
259 PF05335 DUF745: Protein of un 74.9 1E+02 0.0022 31.3 18.3 100 300-399 63-162 (188)
260 KOG4302 Microtubule-associated 74.9 1.9E+02 0.0042 34.6 21.5 218 253-478 23-259 (660)
261 KOG2991 Splicing regulator [RN 74.9 1.2E+02 0.0026 32.3 24.7 79 154-245 72-152 (330)
262 PF06005 DUF904: Protein of un 74.4 55 0.0012 28.1 10.6 51 439-490 13-63 (72)
263 KOG0239 Kinesin (KAR3 subfamil 74.4 2E+02 0.0044 34.6 21.1 34 194-227 107-140 (670)
264 PF14073 Cep57_CLD: Centrosome 74.1 1E+02 0.0022 31.0 21.9 54 440-494 116-169 (178)
265 PF05384 DegS: Sensor protein 73.8 97 0.0021 30.6 22.5 57 335-391 9-65 (159)
266 PF07106 TBPIP: Tat binding pr 73.7 60 0.0013 31.6 12.2 60 404-465 74-136 (169)
267 PF10481 CENP-F_N: Cenp-F N-te 73.7 1.3E+02 0.0029 32.2 19.5 50 287-336 85-134 (307)
268 PF14197 Cep57_CLD_2: Centroso 73.3 37 0.0008 28.9 9.2 56 400-456 3-59 (69)
269 PF14197 Cep57_CLD_2: Centroso 73.1 50 0.0011 28.1 9.9 57 309-365 3-59 (69)
270 COG1842 PspA Phage shock prote 73.1 1.2E+02 0.0026 31.5 22.3 112 335-456 27-139 (225)
271 TIGR02449 conserved hypothetic 72.1 44 0.00095 28.3 9.1 57 439-496 2-58 (65)
272 PRK11519 tyrosine kinase; Prov 71.9 83 0.0018 37.7 15.2 30 330-359 368-397 (719)
273 PF15066 CAGE1: Cancer-associa 71.8 1.9E+02 0.0042 33.2 28.7 42 328-369 414-455 (527)
274 PF10211 Ax_dynein_light: Axon 71.6 53 0.0012 33.0 11.5 117 27-163 30-156 (189)
275 PRK09841 cryptic autophosphory 70.6 2.5E+02 0.0053 33.9 18.7 20 207-226 236-255 (726)
276 PRK15178 Vi polysaccharide exp 70.3 1E+02 0.0022 35.1 14.4 62 368-429 243-306 (434)
277 PF15233 SYCE1: Synaptonemal c 70.3 1E+02 0.0023 29.5 16.6 75 298-372 7-81 (134)
278 PF15290 Syntaphilin: Golgi-lo 69.8 1.7E+02 0.0036 31.6 15.5 41 307-347 64-104 (305)
279 PF02050 FliJ: Flagellar FliJ 69.4 77 0.0017 27.6 16.5 49 331-379 51-99 (123)
280 PF10212 TTKRSYEDQ: Predicted 69.4 2.3E+02 0.0049 33.0 24.2 38 463-500 477-514 (518)
281 PF09738 DUF2051: Double stran 69.1 1.2E+02 0.0026 32.9 14.1 90 312-401 78-167 (302)
282 COG4026 Uncharacterized protei 68.4 60 0.0013 33.8 11.0 68 439-507 137-204 (290)
283 PF14988 DUF4515: Domain of un 67.4 1.5E+02 0.0033 30.3 26.1 39 386-424 161-199 (206)
284 PF04728 LPP: Lipoprotein leuc 67.1 45 0.00098 27.5 8.0 47 445-492 4-50 (56)
285 COG4477 EzrA Negative regulato 67.1 2.6E+02 0.0056 32.8 46.2 81 267-349 253-340 (570)
286 PF07111 HCR: Alpha helical co 65.7 3.1E+02 0.0066 33.2 49.8 384 105-513 136-575 (739)
287 PF05276 SH3BP5: SH3 domain-bi 65.7 1.8E+02 0.0039 30.5 27.0 41 195-235 8-48 (239)
288 KOG1937 Uncharacterized conser 65.6 2.5E+02 0.0055 32.2 33.3 64 140-219 223-286 (521)
289 PF05546 She9_MDM33: She9 / Md 65.2 1.7E+02 0.0037 30.1 16.7 119 327-453 11-129 (207)
290 PF08581 Tup_N: Tup N-terminal 64.9 97 0.0021 27.1 11.4 69 271-342 6-74 (79)
291 COG3074 Uncharacterized protei 64.6 94 0.002 26.8 10.7 70 439-509 6-75 (79)
292 KOG0982 Centrosomal protein Nu 64.1 2.6E+02 0.0057 31.9 30.6 42 308-349 301-342 (502)
293 PF07058 Myosin_HC-like: Myosi 64.1 2.2E+02 0.0049 31.1 19.4 138 378-530 32-179 (351)
294 PF05791 Bacillus_HBL: Bacillu 63.4 67 0.0014 32.0 10.3 133 23-168 33-176 (184)
295 PF13874 Nup54: Nucleoporin co 63.4 50 0.0011 31.5 9.0 88 439-527 32-119 (141)
296 PF10205 KLRAQ: Predicted coil 63.3 1.3E+02 0.0027 27.8 11.2 46 264-309 7-52 (102)
297 PF06818 Fez1: Fez1; InterPro 63.1 1.9E+02 0.004 29.8 22.9 63 257-319 26-88 (202)
298 PF07889 DUF1664: Protein of u 63.0 1.4E+02 0.0031 28.4 12.3 34 439-473 63-96 (126)
299 PRK12704 phosphodiesterase; Pr 62.7 3E+02 0.0065 32.0 24.5 6 545-550 367-372 (520)
300 KOG1962 B-cell receptor-associ 62.1 61 0.0013 33.5 9.8 10 185-194 101-110 (216)
301 PRK04406 hypothetical protein; 62.0 63 0.0014 27.9 8.4 50 300-349 7-56 (75)
302 PF10046 BLOC1_2: Biogenesis o 61.8 96 0.0021 27.9 10.1 86 55-153 7-92 (99)
303 KOG1899 LAR transmembrane tyro 61.8 3.5E+02 0.0075 32.4 22.2 82 284-365 126-207 (861)
304 PF04949 Transcrip_act: Transc 61.8 1.7E+02 0.0036 28.8 17.2 62 346-407 84-145 (159)
305 KOG1962 B-cell receptor-associ 61.4 1.4E+02 0.0031 30.9 12.2 25 354-378 180-204 (216)
306 TIGR02894 DNA_bind_RsfA transc 61.3 1.2E+02 0.0025 30.2 11.1 54 329-382 101-154 (161)
307 PF06705 SF-assemblin: SF-asse 61.2 2.1E+02 0.0045 29.7 36.3 44 395-438 168-211 (247)
308 COG3206 GumC Uncharacterized p 60.8 2.9E+02 0.0062 31.2 26.9 34 257-290 190-223 (458)
309 PRK02119 hypothetical protein; 60.7 58 0.0013 28.0 8.0 51 299-349 4-54 (73)
310 KOG3850 Predicted membrane pro 60.3 2.9E+02 0.0062 31.2 14.9 81 203-288 262-343 (455)
311 PF09763 Sec3_C: Exocyst compl 60.3 75 0.0016 37.9 11.7 82 439-521 25-106 (701)
312 PLN02939 transferase, transfer 60.3 4.4E+02 0.0096 33.2 32.6 54 326-379 258-319 (977)
313 PF05529 Bap31: B-cell recepto 60.3 1.8E+02 0.004 28.8 14.6 109 47-167 24-151 (192)
314 PRK09343 prefoldin subunit bet 60.1 1.5E+02 0.0032 27.7 12.5 15 415-429 37-51 (121)
315 PF15397 DUF4618: Domain of un 59.7 2.4E+02 0.0053 30.0 29.7 37 469-505 189-225 (258)
316 PF10267 Tmemb_cc2: Predicted 59.1 3.1E+02 0.0067 31.0 15.7 23 121-143 63-85 (395)
317 KOG2751 Beclin-like protein [S 59.0 3E+02 0.0064 31.4 15.0 39 385-423 229-267 (447)
318 PF08647 BRE1: BRE1 E3 ubiquit 58.8 1.4E+02 0.0029 26.8 12.8 60 370-429 6-65 (96)
319 PF10267 Tmemb_cc2: Predicted 58.7 2.3E+02 0.005 31.9 14.3 43 268-310 275-318 (395)
320 TIGR02449 conserved hypothetic 58.5 1.1E+02 0.0024 25.9 9.1 61 306-366 2-62 (65)
321 PF04582 Reo_sigmaC: Reovirus 58.3 7.7 0.00017 42.2 2.8 116 411-528 37-153 (326)
322 KOG0288 WD40 repeat protein Ti 58.0 3.3E+02 0.0071 31.0 16.5 56 313-368 8-63 (459)
323 PF01920 Prefoldin_2: Prefoldi 57.9 1E+02 0.0022 27.0 9.5 33 439-472 64-96 (106)
324 PF10205 KLRAQ: Predicted coil 57.6 1.6E+02 0.0034 27.2 10.7 67 276-342 5-71 (102)
325 PF06120 Phage_HK97_TLTM: Tail 57.6 2.8E+02 0.0062 30.1 21.0 43 439-482 129-171 (301)
326 PF10211 Ax_dynein_light: Axon 57.6 2.1E+02 0.0046 28.7 14.7 24 406-429 124-147 (189)
327 KOG0239 Kinesin (KAR3 subfamil 57.1 4.2E+02 0.0092 31.9 19.7 43 133-175 99-141 (670)
328 PF05276 SH3BP5: SH3 domain-bi 56.8 2.6E+02 0.0056 29.4 29.1 152 358-514 68-222 (239)
329 TIGR00618 sbcc exonuclease Sbc 56.2 5.1E+02 0.011 32.6 51.6 12 132-143 192-203 (1042)
330 PF15254 CCDC14: Coiled-coil d 55.5 4.7E+02 0.01 32.1 25.4 79 301-379 391-481 (861)
331 KOG0982 Centrosomal protein Nu 55.4 3.7E+02 0.008 30.8 29.9 33 444-477 403-435 (502)
332 COG1842 PspA Phage shock prote 55.0 2.7E+02 0.0058 29.0 23.8 61 186-246 16-76 (225)
333 KOG4677 Golgi integral membran 55.0 3.8E+02 0.0083 30.8 30.9 153 375-535 310-489 (554)
334 PF04912 Dynamitin: Dynamitin 54.8 3.4E+02 0.0073 30.1 25.1 47 398-445 318-365 (388)
335 PF05791 Bacillus_HBL: Bacillu 54.7 2.3E+02 0.005 28.2 14.2 125 98-224 51-179 (184)
336 PF15290 Syntaphilin: Golgi-lo 54.5 3.1E+02 0.0068 29.6 13.9 33 306-338 70-102 (305)
337 PF10805 DUF2730: Protein of u 52.7 1.4E+02 0.0031 27.2 9.7 26 404-429 37-62 (106)
338 KOG3091 Nuclear pore complex, 52.4 4.3E+02 0.0094 30.7 17.8 65 288-352 339-403 (508)
339 TIGR02231 conserved hypothetic 51.9 1.3E+02 0.0029 34.5 11.6 44 465-508 130-173 (525)
340 PRK00106 hypothetical protein; 51.4 4.7E+02 0.01 30.8 28.1 12 192-203 26-37 (535)
341 PF15450 DUF4631: Domain of un 51.3 4.6E+02 0.01 30.7 46.9 96 270-368 338-441 (531)
342 TIGR01010 BexC_CtrB_KpsE polys 51.1 3.6E+02 0.0077 29.3 18.4 28 218-245 173-200 (362)
343 PF12072 DUF3552: Domain of un 50.7 2.8E+02 0.0061 28.0 19.5 22 192-213 18-39 (201)
344 PF13863 DUF4200: Domain of un 50.5 2E+02 0.0043 26.2 16.4 42 387-428 66-107 (126)
345 PRK15178 Vi polysaccharide exp 50.4 4.4E+02 0.0095 30.2 19.7 20 181-200 196-215 (434)
346 PTZ00464 SNF-7-like protein; P 50.4 3E+02 0.0066 28.3 19.8 25 468-492 123-147 (211)
347 TIGR01069 mutS2 MutS2 family p 50.1 5.1E+02 0.011 31.7 16.5 136 13-156 25-168 (771)
348 KOG1103 Predicted coiled-coil 49.3 4.2E+02 0.0091 29.6 19.7 207 116-344 82-292 (561)
349 PF04102 SlyX: SlyX; InterPro 49.2 90 0.002 26.3 7.3 45 305-349 5-49 (69)
350 PRK04406 hypothetical protein; 49.1 1.3E+02 0.0028 26.0 8.3 43 465-507 17-59 (75)
351 PF12004 DUF3498: Domain of un 49.1 5.7 0.00012 45.5 0.0 119 77-195 376-494 (495)
352 KOG0447 Dynamin-like GTP bindi 48.4 67 0.0015 37.7 8.2 74 498-579 280-358 (980)
353 COG5283 Phage-related tail pro 48.3 7.2E+02 0.016 32.0 26.0 97 306-402 45-141 (1213)
354 TIGR02231 conserved hypothetic 48.2 2E+02 0.0044 33.0 12.3 28 289-316 77-104 (525)
355 KOG4687 Uncharacterized coiled 48.2 3.9E+02 0.0084 28.9 26.8 224 261-495 8-261 (389)
356 PF02994 Transposase_22: L1 tr 47.7 58 0.0012 36.1 7.5 41 442-483 142-182 (370)
357 PRK02119 hypothetical protein; 47.7 1.3E+02 0.0028 25.8 8.1 36 309-344 7-42 (73)
358 PF03962 Mnd1: Mnd1 family; I 47.5 3.1E+02 0.0067 27.6 12.3 15 498-512 153-167 (188)
359 TIGR02894 DNA_bind_RsfA transc 47.1 3E+02 0.0066 27.3 12.0 18 219-236 54-71 (161)
360 KOG2391 Vacuolar sorting prote 47.0 2.3E+02 0.0051 31.3 11.6 38 400-438 223-260 (365)
361 PF05335 DUF745: Protein of un 46.9 3.3E+02 0.0071 27.7 25.0 123 264-386 62-184 (188)
362 PRK02793 phi X174 lysis protei 46.3 1.5E+02 0.0032 25.4 8.1 46 303-348 7-52 (72)
363 PRK10698 phage shock protein P 45.8 3.6E+02 0.0077 27.8 26.1 84 204-292 55-143 (222)
364 PRK10636 putative ABC transpor 45.8 1.3E+02 0.0029 35.5 10.5 26 334-359 600-625 (638)
365 KOG0999 Microtubule-associated 45.4 5.9E+02 0.013 30.2 42.8 107 134-240 43-160 (772)
366 smart00502 BBC B-Box C-termina 45.2 2.2E+02 0.0047 25.2 15.5 77 198-275 4-81 (127)
367 PF04102 SlyX: SlyX; InterPro 45.1 1.1E+02 0.0023 25.9 7.0 43 465-507 10-52 (69)
368 PRK04325 hypothetical protein; 45.0 1.5E+02 0.0033 25.4 8.1 46 304-349 9-54 (74)
369 PRK00409 recombination and DNA 44.9 6.7E+02 0.015 30.7 17.2 139 12-156 24-173 (782)
370 PRK00736 hypothetical protein; 44.8 1.4E+02 0.003 25.2 7.7 45 304-348 5-49 (68)
371 KOG0288 WD40 repeat protein Ti 44.0 5.4E+02 0.012 29.4 16.0 54 402-456 13-67 (459)
372 PF11180 DUF2968: Protein of u 43.9 3.7E+02 0.0081 27.5 14.9 70 431-501 112-182 (192)
373 PF04899 MbeD_MobD: MbeD/MobD 43.9 89 0.0019 26.8 6.4 45 115-159 23-67 (70)
374 KOG3647 Predicted coiled-coil 43.8 4.5E+02 0.0097 28.4 15.6 17 551-567 251-267 (338)
375 PF15372 DUF4600: Domain of un 43.6 3.1E+02 0.0066 26.4 10.9 36 163-202 2-37 (129)
376 PF05377 FlaC_arch: Flagella a 42.9 97 0.0021 25.5 6.1 33 440-473 3-35 (55)
377 smart00513 SAP Putative DNA-bi 42.6 34 0.00074 24.8 3.3 34 596-635 1-34 (35)
378 PF15456 Uds1: Up-regulated Du 42.5 3E+02 0.0066 26.0 12.2 39 270-309 23-61 (124)
379 COG5283 Phage-related tail pro 42.5 8.7E+02 0.019 31.3 26.8 15 226-240 40-54 (1213)
380 PF02994 Transposase_22: L1 tr 42.2 70 0.0015 35.4 7.1 26 600-625 334-359 (370)
381 PRK00295 hypothetical protein; 42.1 1.8E+02 0.0039 24.6 7.9 43 306-348 7-49 (68)
382 KOG4809 Rab6 GTPase-interactin 41.7 6.6E+02 0.014 29.7 34.1 86 294-379 328-413 (654)
383 PF08647 BRE1: BRE1 E3 ubiquit 41.7 2.6E+02 0.0056 25.0 13.6 65 313-377 5-69 (96)
384 PF06721 DUF1204: Protein of u 41.6 4E+02 0.0088 27.2 16.6 54 313-366 3-56 (228)
385 PF15456 Uds1: Up-regulated Du 41.6 3.1E+02 0.0068 25.9 12.8 80 215-296 22-115 (124)
386 PF14712 Snapin_Pallidin: Snap 41.6 2.4E+02 0.0051 24.5 10.4 67 439-506 9-90 (92)
387 PF10805 DUF2730: Protein of u 41.4 2.8E+02 0.006 25.3 10.3 58 275-332 34-93 (106)
388 TIGR03752 conj_TIGR03752 integ 41.4 2.7E+02 0.0059 32.1 11.6 28 484-511 113-140 (472)
389 PF08581 Tup_N: Tup N-terminal 40.7 2.5E+02 0.0055 24.6 11.7 45 320-364 6-50 (79)
390 KOG2264 Exostosin EXT1L [Signa 40.7 2E+02 0.0043 34.0 10.3 20 285-304 88-107 (907)
391 TIGR01069 mutS2 MutS2 family p 40.6 7.7E+02 0.017 30.2 16.1 19 592-610 694-712 (771)
392 PHA03386 P10 fibrous body prot 40.3 1.1E+02 0.0023 27.8 6.5 28 486-513 35-62 (94)
393 KOG1853 LIS1-interacting prote 40.3 4.9E+02 0.011 27.9 23.9 112 216-328 14-125 (333)
394 PF08826 DMPK_coil: DMPK coile 40.3 2.2E+02 0.0048 23.8 8.9 45 411-456 6-51 (61)
395 PF03915 AIP3: Actin interacti 40.2 3.9E+02 0.0084 30.5 12.6 127 395-527 201-329 (424)
396 PF05529 Bap31: B-cell recepto 39.7 2.2E+02 0.0047 28.3 9.6 17 400-416 173-189 (192)
397 PF12777 MT: Microtubule-bindi 39.5 5.4E+02 0.012 28.1 24.7 85 353-438 221-305 (344)
398 PRK13428 F0F1 ATP synthase sub 39.4 6.2E+02 0.014 28.8 18.4 44 488-531 136-179 (445)
399 cd07625 BAR_Vps17p The Bin/Amp 39.3 3.5E+02 0.0076 28.2 11.3 62 64-125 103-187 (230)
400 PRK00295 hypothetical protein; 39.3 1.8E+02 0.004 24.5 7.6 43 465-507 11-53 (68)
401 PF05531 NPV_P10: Nucleopolyhe 39.1 1.2E+02 0.0026 26.5 6.5 30 483-512 38-67 (75)
402 TIGR03495 phage_LysB phage lys 38.7 3.7E+02 0.008 26.0 10.4 74 382-456 20-94 (135)
403 smart00502 BBC B-Box C-termina 38.6 2.8E+02 0.006 24.5 17.7 86 404-490 16-103 (127)
404 PF04949 Transcrip_act: Transc 38.5 4E+02 0.0087 26.3 16.5 101 382-494 32-133 (159)
405 COG3352 FlaC Putative archaeal 37.9 3.2E+02 0.0068 27.0 9.8 46 410-456 45-91 (157)
406 TIGR02977 phageshock_pspA phag 37.6 4.6E+02 0.01 26.7 26.0 25 205-229 56-80 (219)
407 PF05565 Sipho_Gp157: Siphovir 37.0 2.8E+02 0.006 27.1 9.6 79 135-213 9-87 (162)
408 COG0497 RecN ATPase involved i 36.9 7.8E+02 0.017 29.2 27.3 22 535-560 459-480 (557)
409 TIGR00618 sbcc exonuclease Sbc 36.8 9.6E+02 0.021 30.2 54.7 21 86-106 185-205 (1042)
410 TIGR03652 FeS_repair_RIC iron- 36.6 1E+02 0.0022 31.4 6.8 92 15-108 27-119 (216)
411 COG1382 GimC Prefoldin, chaper 36.4 3.8E+02 0.0082 25.4 12.7 18 439-456 72-89 (119)
412 PRK00846 hypothetical protein; 36.2 2.5E+02 0.0053 24.6 8.0 21 324-344 33-53 (77)
413 PRK15396 murein lipoprotein; P 36.1 2E+02 0.0043 25.2 7.5 46 445-491 26-71 (78)
414 PF13166 AAA_13: AAA domain 35.9 8E+02 0.017 29.0 38.0 10 483-492 462-471 (712)
415 TIGR02473 flagell_FliJ flagell 35.9 3.5E+02 0.0076 24.8 19.3 33 271-303 15-47 (141)
416 PF05377 FlaC_arch: Flagella a 35.9 1.8E+02 0.0039 24.0 6.7 43 314-356 3-45 (55)
417 PF07798 DUF1640: Protein of u 35.8 4.4E+02 0.0095 26.0 12.5 134 25-167 17-157 (177)
418 PRK11578 macrolide transporter 35.8 5.2E+02 0.011 28.1 12.6 7 508-514 240-246 (370)
419 PF06428 Sec2p: GDP/GTP exchan 35.7 42 0.00092 30.6 3.4 48 419-468 11-60 (100)
420 PF06920 Ded_cyto: Dedicator o 35.6 1.7E+02 0.0037 28.8 8.0 96 7-106 64-167 (178)
421 KOG4657 Uncharacterized conser 35.5 5.5E+02 0.012 27.0 16.8 71 415-487 57-128 (246)
422 PF07851 TMPIT: TMPIT-like pro 35.4 4.9E+02 0.011 28.8 12.0 56 269-324 4-59 (330)
423 PRK10803 tol-pal system protei 35.3 2.5E+02 0.0054 29.6 9.7 32 463-494 58-89 (263)
424 PF11180 DUF2968: Protein of u 35.1 5.1E+02 0.011 26.5 15.7 79 341-419 107-185 (192)
425 KOG4603 TBP-1 interacting prot 34.6 5E+02 0.011 26.3 13.9 15 334-348 125-139 (201)
426 PF05600 DUF773: Protein of un 34.6 7.9E+02 0.017 28.6 14.7 124 104-227 357-493 (507)
427 KOG2129 Uncharacterized conser 34.5 7.6E+02 0.016 28.3 27.5 56 293-348 161-224 (552)
428 PRK02793 phi X174 lysis protei 34.4 2.4E+02 0.0052 24.1 7.7 42 465-506 14-55 (72)
429 cd00632 Prefoldin_beta Prefold 34.4 3.4E+02 0.0075 24.3 11.7 10 419-428 33-42 (105)
430 KOG2264 Exostosin EXT1L [Signa 34.2 2.8E+02 0.0061 32.8 10.2 38 307-344 89-126 (907)
431 PF08172 CASP_C: CASP C termin 34.0 4.7E+02 0.01 27.6 11.3 59 439-512 81-139 (248)
432 PF14992 TMCO5: TMCO5 family 33.9 6.4E+02 0.014 27.3 15.4 157 309-471 9-170 (280)
433 PRK00736 hypothetical protein; 33.7 2.6E+02 0.0057 23.6 7.7 42 465-506 11-52 (68)
434 PF14257 DUF4349: Domain of un 33.7 1.8E+02 0.0039 30.2 8.3 60 353-417 132-191 (262)
435 PRK04325 hypothetical protein; 33.7 2.5E+02 0.0055 24.1 7.7 43 465-507 15-57 (74)
436 TIGR00293 prefoldin, archaeal 33.6 3.8E+02 0.0082 24.6 9.9 36 309-344 84-119 (126)
437 PF02183 HALZ: Homeobox associ 33.0 1.3E+02 0.0028 23.6 5.3 35 402-437 5-39 (45)
438 PF05700 BCAS2: Breast carcino 32.8 5.6E+02 0.012 26.2 12.2 27 220-246 134-160 (221)
439 PRK10361 DNA recombination pro 32.6 8.4E+02 0.018 28.3 25.8 13 249-261 41-53 (475)
440 PF08172 CASP_C: CASP C termin 32.5 4.2E+02 0.0091 27.9 10.7 53 418-472 81-134 (248)
441 PF07200 Mod_r: Modifier of ru 32.5 4.4E+02 0.0094 24.9 15.9 55 304-358 34-88 (150)
442 TIGR02473 flagell_FliJ flagell 32.0 4E+02 0.0088 24.4 17.3 33 277-309 14-46 (141)
443 PF01519 DUF16: Protein of unk 32.0 3.9E+02 0.0084 24.7 8.9 16 475-490 83-98 (102)
444 KOG1937 Uncharacterized conser 32.0 8.6E+02 0.019 28.2 35.0 46 362-407 384-429 (521)
445 PRK00846 hypothetical protein; 31.9 2.9E+02 0.0064 24.2 7.8 43 465-507 19-61 (77)
446 KOG0244 Kinesin-like protein [ 31.8 1.1E+03 0.024 29.5 19.1 237 281-526 301-586 (913)
447 PRK00409 recombination and DNA 31.5 1.1E+03 0.023 29.1 16.8 17 593-609 706-722 (782)
448 PF15369 KIAA1328: Uncharacter 31.3 4.5E+02 0.0098 29.0 10.8 22 490-511 57-78 (328)
449 PF15397 DUF4618: Domain of un 31.3 6.7E+02 0.015 26.8 32.0 34 478-511 191-224 (258)
450 COG5185 HEC1 Protein involved 31.1 9.1E+02 0.02 28.2 41.3 33 31-63 163-202 (622)
451 PF08537 NBP1: Fungal Nap bind 31.0 3.3E+02 0.0073 29.9 9.8 23 548-571 247-269 (323)
452 PF12022 DUF3510: Domain of un 30.5 1.5E+02 0.0033 27.7 6.4 65 19-87 27-94 (125)
453 PF07889 DUF1664: Protein of u 30.4 4.9E+02 0.011 24.8 13.2 66 248-313 54-119 (126)
454 KOG4787 Uncharacterized conser 30.4 1E+03 0.022 28.5 19.7 123 358-483 414-546 (852)
455 KOG4687 Uncharacterized coiled 30.2 7.4E+02 0.016 26.9 22.0 197 283-498 9-206 (389)
456 PF12709 Kinetocho_Slk19: Cent 29.8 3.2E+02 0.0068 24.6 7.8 78 81-158 1-87 (87)
457 TIGR03752 conj_TIGR03752 integ 29.7 6.8E+02 0.015 29.0 12.3 39 312-350 60-98 (472)
458 PF04880 NUDE_C: NUDE protein, 29.6 77 0.0017 31.5 4.4 45 293-341 3-47 (166)
459 PF07989 Microtub_assoc: Micro 29.6 3.7E+02 0.0081 23.2 9.4 29 293-321 3-31 (75)
460 KOG0240 Kinesin (SMY1 subfamil 29.5 1E+03 0.022 28.3 22.5 81 25-105 59-152 (607)
461 KOG2751 Beclin-like protein [S 29.5 9.1E+02 0.02 27.7 15.6 59 360-418 211-269 (447)
462 PF10234 Cluap1: Clusterin-ass 29.4 7.4E+02 0.016 26.6 18.0 34 361-394 184-217 (267)
463 PF06428 Sec2p: GDP/GTP exchan 29.1 4.5E+02 0.0098 24.0 8.9 50 461-510 10-60 (100)
464 cd00176 SPEC Spectrin repeats, 28.9 4.9E+02 0.011 24.4 19.6 206 68-287 5-211 (213)
465 KOG4677 Golgi integral membran 28.9 9.6E+02 0.021 27.8 27.9 245 52-314 154-418 (554)
466 PF03915 AIP3: Actin interacti 28.9 9.2E+02 0.02 27.6 17.1 28 482-509 294-321 (424)
467 PF04977 DivIC: Septum formati 28.2 1.8E+02 0.004 24.0 6.0 31 398-428 20-50 (80)
468 PF05531 NPV_P10: Nucleopolyhe 27.7 3.5E+02 0.0076 23.7 7.5 32 394-425 3-34 (75)
469 PF07851 TMPIT: TMPIT-like pro 27.4 8E+02 0.017 27.2 12.0 25 486-510 67-91 (330)
470 KOG4001 Axonemal dynein light 27.4 5.8E+02 0.013 26.5 10.1 32 398-429 181-212 (259)
471 COG4985 ABC-type phosphate tra 27.3 1.8E+02 0.004 30.6 6.7 19 491-509 225-243 (289)
472 PF13874 Nup54: Nucleoporin co 27.0 3.8E+02 0.0082 25.5 8.6 24 487-510 107-130 (141)
473 COG3096 MukB Uncharacterized p 26.8 1.3E+03 0.028 28.6 35.7 252 249-508 278-599 (1480)
474 PF05008 V-SNARE: Vesicle tran 26.6 3.8E+02 0.0083 22.4 9.1 73 271-343 1-79 (79)
475 PF08198 Thymopoietin: Thymopo 26.6 12 0.00026 29.8 -1.4 44 594-640 5-48 (49)
476 KOG4403 Cell surface glycoprot 26.5 1E+03 0.023 27.4 18.0 137 269-407 245-426 (575)
477 PF09766 FimP: Fms-interacting 26.3 8.3E+02 0.018 27.0 12.1 140 307-454 8-153 (355)
478 PF08232 Striatin: Striatin fa 25.9 5.2E+02 0.011 24.6 9.2 60 414-482 9-69 (134)
479 PF07798 DUF1640: Protein of u 25.8 6.5E+02 0.014 24.8 18.4 128 384-516 19-153 (177)
480 PF06476 DUF1090: Protein of u 25.8 5.5E+02 0.012 24.0 10.3 87 393-485 22-115 (115)
481 KOG4460 Nuclear pore complex, 25.7 1.2E+03 0.026 27.8 17.7 160 254-418 580-739 (741)
482 PRK10803 tol-pal system protei 25.7 3.9E+02 0.0084 28.2 9.1 60 439-499 42-101 (263)
483 smart00338 BRLZ basic region l 25.6 2.4E+02 0.0052 23.0 6.1 38 444-482 26-63 (65)
484 PRK13729 conjugal transfer pil 25.6 2.6E+02 0.0056 32.3 8.1 56 261-316 68-123 (475)
485 PF06810 Phage_GP20: Phage min 25.5 6E+02 0.013 24.8 9.7 72 299-370 8-82 (155)
486 PF10224 DUF2205: Predicted co 25.4 3.4E+02 0.0073 24.0 7.1 47 423-471 16-63 (80)
487 PF07111 HCR: Alpha helical co 25.3 1.3E+03 0.028 28.2 60.0 476 18-510 85-648 (739)
488 PF06419 COG6: Conserved oligo 25.3 8.8E+02 0.019 28.8 12.8 90 420-517 20-110 (618)
489 KOG4603 TBP-1 interacting prot 25.3 5.9E+02 0.013 25.8 9.5 64 311-374 79-144 (201)
490 PF03962 Mnd1: Mnd1 family; I 25.2 7.1E+02 0.015 25.0 13.5 106 395-512 62-167 (188)
491 PF00170 bZIP_1: bZIP transcri 25.2 3.2E+02 0.0069 22.3 6.7 40 443-483 25-64 (64)
492 KOG0972 Huntingtin interacting 25.1 9.4E+02 0.02 26.4 14.4 138 160-313 218-365 (384)
493 PF04859 DUF641: Plant protein 25.1 6.2E+02 0.013 24.3 9.7 118 68-185 10-131 (131)
494 PF12709 Kinetocho_Slk19: Cent 24.9 5.1E+02 0.011 23.3 11.7 78 220-297 2-84 (87)
495 PF07794 DUF1633: Protein of u 24.9 1.2E+03 0.025 27.5 14.7 123 314-437 593-718 (790)
496 PF04201 TPD52: Tumour protein 24.9 97 0.0021 30.7 4.1 38 133-170 28-65 (162)
497 cd00632 Prefoldin_beta Prefold 24.6 5.1E+02 0.011 23.2 12.1 83 313-395 1-105 (105)
498 PHA03395 p10 fibrous body prot 24.5 3E+02 0.0065 24.7 6.6 56 457-512 9-67 (87)
499 PF06156 DUF972: Protein of un 24.4 4.6E+02 0.01 24.2 8.2 54 300-353 4-57 (107)
500 PF10779 XhlA: Haemolysin XhlA 24.2 4E+02 0.0087 22.4 7.3 51 292-342 1-51 (71)
No 1
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.71 E-value=2.3e-13 Score=165.84 Aligned_cols=314 Identities=22% Similarity=0.278 Sum_probs=192.4
Q ss_pred hhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHhhhH
Q 006565 186 CSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAAL------------------EKAAIVQERTSK 247 (640)
Q Consensus 186 AAGIsklK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAe------------------ek~a~L~er~~~ 247 (640)
+|||++|+.|+.+|+.+|..|.+||+++.+++.|++++++.|..|+..|+ .++..+..+.+
T Consensus 164 aaGv~~y~~r~~ea~~~L~~~~~nl~~~~~~~~el~~~l~~L~~q~~~a~~y~~l~~e~~~~~~~~~~~~~~~~~~~l~- 242 (1163)
T COG1196 164 AAGVSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELE- 242 (1163)
T ss_pred HhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 89999999999999999999999999999999999999999999999998 11111222221
Q ss_pred HHhhhHHHH---HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHH
Q 006565 248 EMQQREDVL---REEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVN 324 (640)
Q Consensus 248 ~~q~r~~a~---ree~~s~le~kE~kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~ 324 (640)
.....+..+ ..++...+...+..+..++.++......+..++.++......+..++.++..+..++..+......+.
T Consensus 243 ~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~~ 322 (1163)
T COG1196 243 ELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELE 322 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222 22333334444555555555555555555555555555555566666666666666666666655555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 006565 325 AKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVI 404 (640)
Q Consensus 325 ~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~areead~aq~E~~elQr~~~qrlaeI 404 (640)
..+.....++......+.....................++.+..... ......+.+...+.+...+.....+..+++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 399 (1163)
T COG1196 323 ERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSA---LLEELEELFEALREELAELEAELAEIRNEL 399 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555554322222222222222222222222210 111222233444555566666666666666
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 405 ERVQRQIESLERQKTDLTNEVNRIRESELEALSK-VALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRA 483 (640)
Q Consensus 405 erl~~qIE~lEre~e~Le~E~~~l~~sEl~al~k-v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~l~ 483 (640)
..++.+++.++.+++.+......+. .++..+.. +..+...+++.+.++..+ ....+.+...+..++..+...+..+.
T Consensus 400 ~~l~~~i~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (1163)
T COG1196 400 EELKREIESLEERLERLSERLEDLK-EELKELEAELEELQTELEELNEELEEL-EEQLEELRDRLKELERELAELQEELQ 477 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666666666 56666655 666666777777777777 77777777777777777777777777
Q ss_pred HHHHHHHHhhHHHHHHHHHHHH
Q 006565 484 AANAMAERLSLEVQSAQAKLDE 505 (640)
Q Consensus 484 e~nrrleal~~e~~~lqs~id~ 505 (640)
.....+......+..+......
T Consensus 478 ~~~~~l~~~~~~~~~l~~~~~~ 499 (1163)
T COG1196 478 RLEKELSSLEARLDRLEAEQRA 499 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 7777777777766666665443
No 2
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.65 E-value=7.9e-12 Score=150.59 Aligned_cols=316 Identities=17% Similarity=0.201 Sum_probs=159.8
Q ss_pred hhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH------------HHHHHHhhhH
Q 006565 186 CSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAAL------EK------------AAIVQERTSK 247 (640)
Q Consensus 186 AAGIsklK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAe------ek------------~a~L~er~~~ 247 (640)
++||..|..+...+..+|..+..++.++.+.+.+.+.+++.+..+...+. .. +..+.....
T Consensus 162 ~~g~~~~~~~~~~~~~~l~~~~~~l~el~~~~~~L~~q~~~l~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~- 240 (1164)
T TIGR02169 162 IAGVAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKE- 240 (1164)
T ss_pred HhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 78999999999999999999988888888888888888888888777554 11 111111111
Q ss_pred HHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHhhHHHHHHHHHHHHHHHHHH
Q 006565 248 EMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAE-SKMRSYEVEISSQKLETKELSEKLEAVNAK 326 (640)
Q Consensus 248 ~~q~r~~a~ree~~s~le~kE~kie~~k~ei~~aEq~la~~q~eL~e~e-~kIk~~e~ei~~le~el~~L~ekle~~~~e 326 (640)
....+ ...+...+..++.++..+..++...+..+..++..+.... .++..+..++..+..++..+..+...+..+
T Consensus 241 ~~~~~----l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 316 (1164)
T TIGR02169 241 AIERQ----LASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERE 316 (1164)
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222 2222233333444444444444444444444444444321 222234444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-------HH
Q 006565 327 AQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLA-------ME 399 (640)
Q Consensus 327 ies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~areead~aq~E~~elQr~~-------~q 399 (640)
+.....++..+..++..+..++......+......+..++..+..+.......+..+...+.+...+.... ..
T Consensus 317 l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 396 (1164)
T TIGR02169 317 LEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEK 396 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444444444444444444444444444444433333 33
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 006565 400 RMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSK-VALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESE 478 (640)
Q Consensus 400 rlaeIerl~~qIE~lEre~e~Le~E~~~l~~sEl~al~k-v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~ 478 (640)
...++..+..++..++.++..+...+..+. .++..+.. +..+...+......++.+ ....+.+...+..++..+...
T Consensus 397 l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~-~~~~~l~~~~~~l~~~~~~~~~~l~~l-~~~~~~~~~~~~~~~~~l~~~ 474 (1164)
T TIGR02169 397 LKREINELKRELDRLQEELQRLSEELADLN-AAIAGIEAKINELEEEKEDKALEIKKQ-EWKLEQLAADLSKYEQELYDL 474 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444 44444444 444445555555555544 555555555555555555555
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 006565 479 RRSRAAANAMAERLSLEVQSAQAKLDEMQQ 508 (640)
Q Consensus 479 re~l~e~nrrleal~~e~~~lqs~id~Leg 508 (640)
+..+...+..+..+..++..++..++.+++
T Consensus 475 ~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~ 504 (1164)
T TIGR02169 475 KEEYDRVEKELSKLQRELAEAEAQARASEE 504 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 555555555555555555555555544443
No 3
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.63 E-value=1.3e-11 Score=148.34 Aligned_cols=295 Identities=20% Similarity=0.250 Sum_probs=176.1
Q ss_pred hhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHH------------hhhH
Q 006565 186 CSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEK------AAIVQE------------RTSK 247 (640)
Q Consensus 186 AAGIsklK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek------~a~L~e------------r~~~ 247 (640)
++|++.|+. ++..|..||.|+.|++.|++.++..|..|+++|... +..+.. ...
T Consensus 164 ~~~~~~~~~-------~~~~t~~nL~r~~d~l~el~~ql~~L~~q~~~a~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~- 235 (1179)
T TIGR02168 164 AAGISKYKE-------RRKETERKLERTRENLDRLEDILNELERQLKSLERQAEKAERYKELKAELRELELALLVLRLE- 235 (1179)
T ss_pred HccHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 468887765 677888899999999999999999999999999821 111111 111
Q ss_pred HHhhhHHHH---HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHH
Q 006565 248 EMQQREDVL---REEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVN 324 (640)
Q Consensus 248 ~~q~r~~a~---ree~~s~le~kE~kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~ 324 (640)
........+ ...+...+...+.++..+...+......+..++..+.....++..+...+..++.++..+..++..+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~~~~~~l~ 315 (1179)
T TIGR02168 236 ELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLE 315 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 111111110 12222233444444444444444444555555555566666666677777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 006565 325 AKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVI 404 (640)
Q Consensus 325 ~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~areead~aq~E~~elQr~~~qrlaeI 404 (640)
..+..+..++..+..++..+...+......+......++.++..+.........+...+...+.+...++........++
T Consensus 316 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 395 (1179)
T TIGR02168 316 RQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQI 395 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777766666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHH-H-----HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 006565 405 ERVQRQIESLERQKTDLTNEVNRIRESELEALSK-V-----ALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESE 478 (640)
Q Consensus 405 erl~~qIE~lEre~e~Le~E~~~l~~sEl~al~k-v-----~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~ 478 (640)
..+..++..++.++..+..++..+. .++..+.. + ..+...+.....+++.+ ......+..++..+...+...
T Consensus 396 ~~~~~~~~~l~~~~~~l~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~l~~~~~~~ 473 (1179)
T TIGR02168 396 ASLNNEIERLEARLERLEDRRERLQ-QEIEELLKKLEEAELKELQAELEELEEELEEL-QEELERLEEALEELREELEEA 473 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666666665 55544433 3 34444444444444444 333344444444444444444
Q ss_pred HHHHHHHHHHHH
Q 006565 479 RRSRAAANAMAE 490 (640)
Q Consensus 479 re~l~e~nrrle 490 (640)
+..+..+..++.
T Consensus 474 ~~~~~~l~~~~~ 485 (1179)
T TIGR02168 474 EQALDAAERELA 485 (1179)
T ss_pred HHHHHHHHHHHH
Confidence 444444443333
No 4
>PRK02224 chromosome segregation protein; Provisional
Probab=99.60 E-value=3.2e-09 Score=126.03 Aligned_cols=106 Identities=28% Similarity=0.352 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhh
Q 006565 348 YKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNR 427 (640)
Q Consensus 348 l~se~er~ee~~~rleeaEee~kea~e~~~~areead~aq~E~~elQr~~~qrlaeIerl~~qIE~lEre~e~Le~E~~~ 427 (640)
++....++.++..++..++..+......++.+....+.+..++.++.....++..++.+++ .+..+..++..+..++..
T Consensus 532 le~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le-~~~~~~~~i~~~~~~~~~ 610 (880)
T PRK02224 532 IEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLE-RIRTLLAAIADAEDEIER 610 (880)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444455555555555555566666666666666665 456666666666666665
Q ss_pred hcHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 006565 428 IRESELEALSK-VALLEARVEEREKEIES 455 (640)
Q Consensus 428 l~~sEl~al~k-v~~lE~~vee~e~eiE~ 455 (640)
++ .++..+.. ...+..++.+++..++.
T Consensus 611 ~~-~~~~~l~~~~~~~~~~l~~~r~~i~~ 638 (880)
T PRK02224 611 LR-EKREALAELNDERRERLAEKRERKRE 638 (880)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55 55554444 34444444444444444
No 5
>PRK02224 chromosome segregation protein; Provisional
Probab=99.56 E-value=6.7e-09 Score=123.38 Aligned_cols=142 Identities=18% Similarity=0.266 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHH-HHHHHHHHHH
Q 006565 370 KKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSK-VALLEARVEE 448 (640)
Q Consensus 370 kea~e~~~~areead~aq~E~~elQr~~~qrlaeIerl~~qIE~lEre~e~Le~E~~~l~~sEl~al~k-v~~lE~~vee 448 (640)
......+...+..+...+.+.....+.+-+..+....+...+..+..+++.+..++.++. . +..+.. +..++..+.+
T Consensus 533 e~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le-~-~~~~~~~i~~~~~~~~~ 610 (880)
T PRK02224 533 EEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLE-R-IRTLLAAIADAEDEIER 610 (880)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHH
Confidence 333333444444444444444333333333334444444455555555555555555555 2 444444 5555555555
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhh
Q 006565 449 REKEIESLLESNNEQRASTVKKLEDLLES------------ERRSRAAANAMAERLSLEVQSAQAKLDEMQQELTKAR 514 (640)
Q Consensus 449 ~e~eiE~L~~~~~eq~~~~l~~le~~le~------------~re~l~e~nrrleal~~e~~~lqs~id~Leg~~~~~~ 514 (640)
++..++.| ....+.+...+..+...+.. ++..+..++..+..+...+..+.+.++.+.+....+.
T Consensus 611 ~~~~~~~l-~~~~~~~~~~l~~~r~~i~~l~~~~~~~~~e~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~i~~~~ 687 (880)
T PRK02224 611 LREKREAL-AELNDERRERLAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVE 687 (880)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555 54444445555444444444 3445555555555555556666666666666665433
No 6
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.51 E-value=1.3e-09 Score=131.48 Aligned_cols=308 Identities=19% Similarity=0.219 Sum_probs=179.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHH--------HHHHHhHHHHH
Q 006565 195 RSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDV--------LREEFSSTLAE 266 (640)
Q Consensus 195 Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a~L~er~~~~~q~r~~a--------~ree~~s~le~ 266 (640)
.......++..+..+|.++.|.+.+++.++..|..|++.+........ +.. ........ -...+..++..
T Consensus 164 g~~~~~~~~~~~~~~l~~~~~~l~el~~~~~~L~~q~~~l~~~~e~~~-~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (1164)
T TIGR02169 164 GVAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAE-RYQ-ALLKEKREYEGYELLKEKEALERQKEA 241 (1164)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356678889999999999999999999999999999988874444221 111 22111110 01122222333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhh--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 267 KEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISS--------QKLETKELSEKLEAVNAKAQSFEREARIME 338 (640)
Q Consensus 267 kE~kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~--------le~el~~L~ekle~~~~eies~e~el~~L~ 338 (640)
...++.....++......++.+...+..+...+..+...+.. ++.++..+..+...+..++..++.++..+.
T Consensus 242 ~~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 321 (1164)
T TIGR02169 242 IERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAE 321 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444444444333333 555555566666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 339 QDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQK 418 (640)
Q Consensus 339 ~ei~~L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~areead~aq~E~~elQr~~~qrlaeIerl~~qIE~lEre~ 418 (640)
.++..+...+.............+...+.++..+......+...+...+.....++....+....+..++..+..+.+++
T Consensus 322 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 401 (1164)
T TIGR02169 322 ERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREI 401 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666666666677777777777777
Q ss_pred HHhHHHHhhhcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 006565 419 TDLTNEVNRIRESELEALSK-VALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQ 497 (640)
Q Consensus 419 e~Le~E~~~l~~sEl~al~k-v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~l~e~nrrleal~~e~~ 497 (640)
..+...+..+. .++..+.. +..+...++..+.++..+ ..........+..+...+......+...+..+..+..++.
T Consensus 402 ~~~~~~~~~l~-~~l~~l~~~~~~~~~~~~~l~~~~~~l-~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~l~ 479 (1164)
T TIGR02169 402 NELKRELDRLQ-EELQRLSEELADLNAAIAGIEAKINEL-EEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYD 479 (1164)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766666666 66666665 656666666655555555 5555555555555555554444444444444444444444
Q ss_pred HHHHHHHHH
Q 006565 498 SAQAKLDEM 506 (640)
Q Consensus 498 ~lqs~id~L 506 (640)
.++..+..+
T Consensus 480 ~l~~~l~~l 488 (1164)
T TIGR02169 480 RVEKELSKL 488 (1164)
T ss_pred HHHHHHHHH
Confidence 444444433
No 7
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.41 E-value=1.2e-06 Score=105.83 Aligned_cols=24 Identities=13% Similarity=0.184 Sum_probs=16.0
Q ss_pred hhHHHHHHHHHhcCchhhhhhccCCC
Q 006565 599 FTVQKLKQELTKHNFGAELLQLRNPN 624 (640)
Q Consensus 599 ~t~~kl~~el~~~~~g~~l~~l~~~~ 624 (640)
-.+..|+..+...| +.+-++..++
T Consensus 965 ~~~~~l~~~i~~lg--~aiee~~~~~ 988 (1179)
T TIGR02168 965 DDEEEARRRLKRLE--NKIKELGPVN 988 (1179)
T ss_pred cCHHHHHHHHHHHH--HHHHHcCCCC
Confidence 35678888887664 4666776555
No 8
>PRK03918 chromosome segregation protein; Provisional
Probab=99.41 E-value=1.5e-06 Score=103.22 Aligned_cols=12 Identities=25% Similarity=0.255 Sum_probs=5.2
Q ss_pred hhhHHHHHHHHH
Q 006565 29 IDNVVKVLDGLI 40 (640)
Q Consensus 29 ~~~~~~~l~~~l 40 (640)
..+|-..|+..+
T Consensus 110 ~~~~~~~i~~~~ 121 (880)
T PRK03918 110 DSSVREWVERLI 121 (880)
T ss_pred HHHHHHHHHHhc
Confidence 334444444433
No 9
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.38 E-value=1.2e-07 Score=117.64 Aligned_cols=487 Identities=13% Similarity=0.142 Sum_probs=211.0
Q ss_pred hhHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHhhhhcc---cCCchHH-HHHHHHHHh--hhchHHHHHHHHH---h
Q 006565 7 CSSAIQSMERKLRAACHSSDASIDNVVKVLDGLISEYETSC---HGPGKWQ-KLATFLQQS--SEGPILDLVKRLI---D 77 (640)
Q Consensus 7 c~~~~~~me~~l~~ac~~~~a~~~~~~~~l~~~l~~y~~s~---~G~g~~~-k~~~~L~~~--l~~~~~d~~~~~~---~ 77 (640)
|..-++...++|..+| .+++.-.+|..+=..|+..- ..+.... -|.+|+... -..|-+.+|.+-| .
T Consensus 617 ~~~eL~~~~~~i~~~~-----~~~~~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~k~ie~a~~~~~~~C~LC~R~f~~ee 691 (1311)
T TIGR00606 617 KEEQLSSYEDKLFDVC-----GSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEA 691 (1311)
T ss_pred HHHHHHHHHHHHhcCC-----CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCCCCCCCCChh
Confidence 3444555555665444 44555555555555555544 2222222 666777766 5566777777777 3
Q ss_pred HHHhHHHHHHhhhcCchhHHHHHHHHHHhhHHhHHHHHHHhhHHhHHHHHhhHHHHHHHHhHHhhhcchHHhHHhhHHhH
Q 006565 78 QIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTV 157 (640)
Q Consensus 78 ~i~~~~~~l~~~c~s~~~k~~~~~k~le~~~k~~~~~~k~~e~~i~d~kk~~~~~~~~~~~l~~k~~s~ee~~~~l~k~l 157 (640)
.+....+.|.-...+..++++.+.+.++... ..|+. +..+...|..-...+...+..+++++..+...|
T Consensus 692 e~~~f~~~L~~~~~~~p~~~~~~~~~~~~~~-------~~~e~----l~~l~~~~~~~~~l~~~eip~l~~~l~~le~~l 760 (1311)
T TIGR00606 692 ELQEFISDLQSKLRLAPDKLKSTESELKKKE-------KRRDE----MLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDI 760 (1311)
T ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHHHH-------HHHHH----HHHhhhhHHHHHHHHHhhchhHHHHHHHHHHHH
Confidence 3344444444444444334444433333222 22221 122222222222222233333333333333333
Q ss_pred HhhhhhhHHHHHHHHHHHhHhhHh---------hHHHhhhHHHHhhhhHHHHHHH---------HHHHHHHHHHHHHHHH
Q 006565 158 DSLKNEISDWKRKYDQVLTKQKAM---------EDQVCSEIEVLKSRSTAAEARL---------AAAREQALSAQEEVEE 219 (640)
Q Consensus 158 e~~~~e~~ew~~kYe~~~~~~k~~---------~~~~AAGIsklK~Rkkeae~RL---------~at~enL~RVkDel~E 219 (640)
...+.+..+....++....+...+ -+++...|..++.+.......+ ..+...+..++..+..
T Consensus 761 ~~~~~~le~~~~~l~~~~~~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~~~s~~ele~ei~~~~~el~~ 840 (1311)
T TIGR00606 761 QRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDT 840 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHH
Confidence 333333333333333222222111 1222333333333333333322 3344445555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 220 WKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKM 299 (640)
Q Consensus 220 wkrky~~L~~QAKkAeek~a~L~er~~~~~q~r~~a~ree~~s~le~kE~kie~~k~ei~~aEq~la~~q~eL~e~e~kI 299 (640)
....++.+..+......++..|+.+++ .+......+...+. ....+++.+++++.++......+..+..++..+..++
T Consensus 841 l~~~~e~l~~e~e~~~~eI~~Lq~ki~-el~~~klkl~~~l~-~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~ 918 (1311)
T TIGR00606 841 VVSKIELNRKLIQDQQEQIQHLKSKTN-ELKSEKLQIGTNLQ-RRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFL 918 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 555555556666666666666666664 55555333333333 2222233444444444444444444444444333333
Q ss_pred hhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 300 RSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRE 379 (640)
Q Consensus 300 k~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~a 379 (640)
..+..+...+..+...-..+....-..+...-..+..+...|..+...- ....+......+..+...+..+..+....
T Consensus 919 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~~--~~~qL~~~e~el~~~~~~ie~le~e~~~l 996 (1311)
T TIGR00606 919 EKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDG--KDDYLKQKETELNTVNAQLEECEKHQEKI 996 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333222222222222222222233333333333221110 00223333444444444444444444444
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhHHHHhhhcHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 006565 380 RAEAAAARKGKSEFENLAMERMAVIERV--QRQIESLERQKTDLTNEVNRIRESELEALSK-VALLEARVEEREKEIESL 456 (640)
Q Consensus 380 reead~aq~E~~elQr~~~qrlaeIerl--~~qIE~lEre~e~Le~E~~~l~~sEl~al~k-v~~lE~~vee~e~eiE~L 456 (640)
...+...+++...++...-.....|..+ ...+..++.++..|..+...+. ...+.. ...+...+..+......+
T Consensus 997 ~~~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~~~~~~~~---~~~~~~e~~~l~~~~~~l~~~~a~l 1073 (1311)
T TIGR00606 997 NEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQ---VLQMKQEHQKLEENIDLIKRNHVLA 1073 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444433334333 3344444444444443333332 122222 333333333333333333
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhcccccccchhhh
Q 006565 457 LESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQELTKARLNETALGSKLRA 526 (640)
Q Consensus 457 ~~~~~eq~~~~l~~le~~le~~re~l~e~nrrleal~~e~~~lqs~id~Leg~~~~~~~~et~l~~~~k~ 526 (640)
.-...++..+|..+..+|++ .....+..+....-.++.+++--++.|..|. .|||.-+-.
T Consensus 1074 -~g~~k~le~qi~~l~~eL~e--~~yk~a~~ryrka~i~~~~~~~~~~d~~~~~-------~~~~~~~~~ 1133 (1311)
T TIGR00606 1074 -LGRQKGYEKEIKHFKKELRE--PQFRDAEEKYREMMIVMRTTELVNKDLDIYY-------KTLDQAIMK 1133 (1311)
T ss_pred -HHHHHHHHHHHHHHHHHHcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
Confidence 33333445555555555543 3444556666666677778887788887776 567765554
No 10
>PRK03918 chromosome segregation protein; Provisional
Probab=99.38 E-value=1.8e-06 Score=102.64 Aligned_cols=67 Identities=25% Similarity=0.284 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 006565 439 VALLEARVEEREKEIESLLE-----SNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEM 506 (640)
Q Consensus 439 v~~lE~~vee~e~eiE~L~~-----~~~eq~~~~l~~le~~le~~re~l~e~nrrleal~~e~~~lqs~id~L 506 (640)
+..+..++..++..++.+ . ...+.+...+..++..+.++...+......++.+..++..++..+..+
T Consensus 635 i~~l~~~i~~l~~~~~~l-~~~~~~~~~~~l~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~i~~~~~~~~~l 706 (880)
T PRK03918 635 LAETEKRLEELRKELEEL-EKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEER 706 (880)
T ss_pred HHHHHHHHHHHHHHHHHH-HhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444 3 334444455555555555555555555555555555544444444443
No 11
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.34 E-value=2.2e-06 Score=107.71 Aligned_cols=438 Identities=19% Similarity=0.232 Sum_probs=246.9
Q ss_pred hHHHhHHHHHHhhhcCchhHHHHHHHHHHhhHHhHHHH---HHHhhHHhHHHHHhhHHHHHHHHhHHhhhcchHHhHHhh
Q 006565 77 DQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEY---LKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSL 153 (640)
Q Consensus 77 ~~i~~~~~~l~~~c~s~~~k~~~~~k~le~~~k~~~~~---~k~~e~~i~d~kk~~~~~~~~~~~l~~k~~s~ee~~~~l 153 (640)
+++..-.+.|..++.-.-.....+.++|+..+...+-+ ...+..-|.|+++..+.-..+.+.|...++.++..|..|
T Consensus 1255 ~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l 1334 (1930)
T KOG0161|consen 1255 DEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEETREKSALENALRQLEHELDLL 1334 (1930)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444566667767777888888888888555444 445777788889999999999999999999999999998
Q ss_pred HHhHHhh--------------hhhhHHHHHHHHHHHhHhhHhhHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 154 SKTVDSL--------------KNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEE 219 (640)
Q Consensus 154 ~k~le~~--------------~~e~~ew~~kYe~~~~~~k~~~~~~AAGIsklK~Rkkeae~RL~at~enL~RVkDel~E 219 (640)
.+++|.. -.++.+|+++|+..+.. ++..+..-++.+..++.+..+.++.+.-....
T Consensus 1335 ~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~~~~----------~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~ 1404 (1930)
T KOG0161|consen 1335 REQLEEEQEAKNELERKLSKANAELAQWKKKFEEEVLQ----------RLEELEELKKKLQQRLQELEEQIEAANAKNAS 1404 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 8888754 45677899999887663 23344455566666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHhhhHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 220 WKRKYGVAVREAKAALEKAAIV---QERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAE 296 (640)
Q Consensus 220 wkrky~~L~~QAKkAeek~a~L---~er~~~~~q~r~~a~ree~~s~le~kE~kie~~k~ei~~aEq~la~~q~eL~e~e 296 (640)
.++-+..|...+..+.-....+ -+..+ .-+-+-+-+..+.....+.+-.+++....+....+..+-.+...+.+..
T Consensus 1405 Lek~k~~l~~el~d~~~d~~~~~~~~~~le-~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~ 1483 (1930)
T KOG0161|consen 1405 LEKAKNRLQQELEDLQLDLERSRAAVAALE-KKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELL 1483 (1930)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 6555555555555544222221 11111 1111112223333333333333333333444444444444444444444
Q ss_pred HHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHH-
Q 006565 297 SKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFE------------------RFEE- 357 (640)
Q Consensus 297 ~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~e------------------r~ee- 357 (640)
..+..+..+-+.+..+|..|..........++.+++..+.+..++..|+..++.+.. ..-+
T Consensus 1484 e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~le~eE~~~lr~~~~~~~~r~e~ 1563 (1930)
T KOG0161|consen 1484 EQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAALEAEEDKKLRLQLELQQLRSEI 1563 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555555555555555555555555555544441 1111
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhh------
Q 006565 358 ---VQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRI------ 428 (640)
Q Consensus 358 ---~~~rleeaEee~kea~e~~~~areead~aq~E~~elQr~~~qrlaeIerl~~qIE~lEre~e~Le~E~~~l------ 428 (640)
+..+-++++...+.....++..+..++.=.....+.-+..-....+|..++.+++...+...++...+..+
T Consensus 1564 er~l~ek~Ee~E~~rk~~~~~i~~~q~~Le~E~r~k~e~~r~KKkle~di~elE~~ld~ank~~~d~~K~lkk~q~~~k~ 1643 (1930)
T KOG0161|consen 1564 ERRLQEKDEEIEELRKNLQRQLESLQAELEAETRSKSEALRSKKKLEGDINELEIQLDHANKANEDAQKQLKKLQAQLKE 1643 (1930)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhHHHHHHHHhhHHHHHH
Confidence 11222233333344444444444444443333444333333444455555555555555444444443222
Q ss_pred --------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 006565 429 --------RESELEALSKVALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQ 500 (640)
Q Consensus 429 --------~~sEl~al~kv~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~l~e~nrrleal~~e~~~lq 500 (640)
..+.-+.+..+...+.++.-.+.++++| ...++........++.++.+..+.++..+..-.++..+..-+.
T Consensus 1644 lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL-~~~l~~~~Rarr~aE~e~~E~~e~i~~~~~~~s~l~~~KrklE 1722 (1930)
T KOG0161|consen 1644 LQRELEDAQRAREELLEQLAEAERRLAALQAELEEL-REKLEALERARRQAELELEELAERVNELNAQNSSLTAEKRKLE 1722 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccchhhHHHHHH
Confidence 2111222223667777778888888887 7777777777777888888888888777666555555555556
Q ss_pred HHHHHHHHHhhhhhcccccccchhhh
Q 006565 501 AKLDEMQQELTKARLNETALGSKLRA 526 (640)
Q Consensus 501 s~id~Leg~~~~~~~~et~l~~~~k~ 526 (640)
..|--|+..+...--+=-+.+-+.|.
T Consensus 1723 ~~i~~l~~elee~~~~~~~~~Er~kk 1748 (1930)
T KOG0161|consen 1723 AEIAQLQSELEEEQSELRAAEERAKK 1748 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 66665655554443333334444443
No 12
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.33 E-value=1.1e-06 Score=109.32 Aligned_cols=83 Identities=16% Similarity=0.224 Sum_probs=45.6
Q ss_pred HhHHhhHHhHHhhhhhhHHHHHHHHHHHhHhhHhhHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 148 EKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVA 227 (640)
Q Consensus 148 e~~~~l~k~le~~~~e~~ew~~kYe~~~~~~k~~~~~~AAGIsklK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L 227 (640)
+++..+-...+.......+|+..|+.... +...+..-+.........+..++..+...+..+.+.+.+....+..+
T Consensus 702 ~~~~~~p~~~~~~~~~~~~~~~~~e~l~~----l~~~~~~~~~l~~~eip~l~~~l~~le~~l~~~~~~le~~~~~l~~~ 777 (1311)
T TIGR00606 702 SKLRLAPDKLKSTESELKKKEKRRDEMLG----LAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTI 777 (1311)
T ss_pred HHHhcchhhHHHHHHHHHHHHHHHHHHHH----hhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444566667777788888888554 22222222222234455556666666666666666666666665555
Q ss_pred HHHHHHH
Q 006565 228 VREAKAA 234 (640)
Q Consensus 228 ~~QAKkA 234 (640)
......+
T Consensus 778 ~~~~~~~ 784 (1311)
T TIGR00606 778 MPEEESA 784 (1311)
T ss_pred HHhHHHH
Confidence 5554444
No 13
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=99.30 E-value=4.3e-06 Score=94.86 Aligned_cols=298 Identities=21% Similarity=0.227 Sum_probs=137.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhhhHHHhhhHHHHHHHHhHH-H
Q 006565 193 KSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAI-------VQERTSKEMQQREDVLREEFSST-L 264 (640)
Q Consensus 193 K~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a~-------L~er~~~~~q~r~~a~ree~~s~-l 264 (640)
+..-..+-.++..+-..|.+|++++.-++..|..+......|..++.. ...++. .+...+.++.+.+... +
T Consensus 115 k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve-~L~~Ei~~lke~l~~~~~ 193 (522)
T PF05701_consen 115 KAELESAREQYASAVAELDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVE-ELSKEIIALKESLESAKL 193 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 333444567778888888888888888888888887766666644444 333332 4444444444444432 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 006565 265 AEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQ-DKVY 343 (640)
Q Consensus 265 e~kE~kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~-ei~~ 343 (640)
+-.++. +....-..+.++....+...+.+.+.++..+..++ ...+.|..++......+..+..++..... .+..
T Consensus 194 a~~eAe-ee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~----~~~k~Le~kL~~a~~~l~~Lq~El~~~~~~~l~~ 268 (522)
T PF05701_consen 194 AHIEAE-EERIEIAAEREQDAEEWEKELEEAEEELEELKEEL----EAAKDLESKLAEASAELESLQAELEAAKESKLEE 268 (522)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 111111 11111122333444445555666666666666655 44466666777777777777666666555 1111
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 344 ---LEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTD 420 (640)
Q Consensus 344 ---L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~areead~aq~E~~elQr~~~qrlaeIerl~~qIE~lEre~e~ 420 (640)
...........+..+...|+.+...+..+..+....+..++..+.+.......+.............|.+|+-++..
T Consensus 269 ~~~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~ 348 (522)
T PF05701_consen 269 EAEAKEKSSELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNK 348 (522)
T ss_pred hHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHH
Confidence 11112222223333334444444444444444444433333333333333333322222223333333333333333
Q ss_pred hHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 006565 421 LTNEVNRIRESELEALSKVALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQ 497 (640)
Q Consensus 421 Le~E~~~l~~sEl~al~kv~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~l~e~nrrleal~~e~~ 497 (640)
+..++......+-..-.....+-..++....+.+.+ ....+..+..+..+..+++..+..+..++.++.+..-++.
T Consensus 349 ~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~A-k~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~e 424 (522)
T PF05701_consen 349 TRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEA-KKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAE 424 (522)
T ss_pred HHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333111111111333444444444444444 4444444444444444444444444444444444444433
No 14
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.30 E-value=1e-05 Score=101.96 Aligned_cols=407 Identities=18% Similarity=0.265 Sum_probs=230.2
Q ss_pred hhHHhHHHHHhhHHHHHHHHhHHhhhcchHHhHHhhHHhHHhhhhhhHHHHHHHHHHHhHhhHhhHHHhh---hHHHHhh
Q 006565 118 YDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCS---EIEVLKS 194 (640)
Q Consensus 118 ~e~~i~d~kk~~~~~~~~~~~l~~k~~s~ee~~~~l~k~le~~~~e~~ew~~kYe~~~~~~k~~~~~~AA---GIsklK~ 194 (640)
.+..+.++..-.+...-+-..|..+.+.+++.|..+.++++.-+.....|...|....++-+.+.+..+. .|+++-.
T Consensus 906 le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~k 985 (1930)
T KOG0161|consen 906 LEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSK 985 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777766777778888899999999999999999999999999999999999999999988888776 6888888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhhhHHHhhhHHHHHHHHhHHHHHH
Q 006565 195 RSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAI-------VQERTSKEMQQREDVLREEFSSTLAEK 267 (640)
Q Consensus 195 Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a~-------L~er~~~~~q~r~~a~ree~~s~le~k 267 (640)
-++..+.++..+..++..-++.+....+.-..++.+..--+..+.. ++... ..+... ...+...+..+
T Consensus 986 ekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~-rkle~e----l~~~~e~~~~~ 1060 (1930)
T KOG0161|consen 986 EKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAK-RKLEGE----LKDLQESIEEL 1060 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH----HHHhhhHHHHH
Confidence 8888999999999999888888877777666666555444432222 11111 122222 12233334445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 268 EEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQK 347 (640)
Q Consensus 268 E~kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ek 347 (640)
..+...+...+.-.+-.+..++..+.+....+..+...++.+..+|..|.+.++.-.......++....|..++..+.+.
T Consensus 1061 ~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~ 1140 (1930)
T KOG0161|consen 1061 KKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEE 1140 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666666666666666667777777777777777777777777777777777777777777777666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 006565 348 YKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGK-SEFENLAMERMAVIERVQRQIESLERQKTDLTNEVN 426 (640)
Q Consensus 348 l~se~er~ee~~~rleeaEee~kea~e~~~~areead~aq~E~-~elQr~~~qrlaeIerl~~qIE~lEre~e~Le~E~~ 426 (640)
++...+......+--.-.+.++..+...........+..-.+. ...+....++..+++.+......++++...++.+..
T Consensus 1141 Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~~lr~~~~~~~~el~~qle~l~~~k~~lekek~~lq~e~~ 1220 (1930)
T KOG0161|consen 1141 LEEQGGTTAAQLELNKKREAEVQKLRRDLEEETLDHEAQIEELRKKHADSLAELQEQLEQLQKDKAKLEKEKSDLQREIA 1220 (1930)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655322111111111111112222211111111111110000 111111233333333333333333333333333333
Q ss_pred hhcHHHHHH-------HHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 006565 427 RIRESELEA-------LSK-VALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQS 498 (640)
Q Consensus 427 ~l~~sEl~a-------l~k-v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~l~e~nrrleal~~e~~~ 498 (640)
.+. .+++. .++ ...++..+.+....++.+ ......+..+...+..++..+.-.+.++...+.++.--...
T Consensus 1221 ~l~-~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~~-~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~ 1298 (1930)
T KOG0161|consen 1221 DLA-AELEQLSSEKKDLEKKDKKLEAQLSELQLKLDEQ-ERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQA 1298 (1930)
T ss_pred HHH-HHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHH
Confidence 333 33322 222 333344444444444444 33222222333334444444444444444444444444444
Q ss_pred HHHHHHHHHHHhhhhhcccccccchhhhhhccc
Q 006565 499 AQAKLDEMQQELTKARLNETALGSKLRAVSHGK 531 (640)
Q Consensus 499 lqs~id~Leg~~~~~~~~et~l~~~~k~~~~~k 531 (640)
+.+.|+.+...+....=.-++|.+.++...+-+
T Consensus 1299 ~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~ 1331 (1930)
T KOG0161|consen 1299 LESQLEELKRQLEEETREKSALENALRQLEHEL 1331 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555444444466777776665554
No 15
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=99.28 E-value=2e-05 Score=97.35 Aligned_cols=154 Identities=16% Similarity=0.266 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHhhhhcccCCchHH----HHHHHHHHhhhchHHHHHHHHHhHHHhHHH
Q 006565 9 SAIQSMERKLRAACHSSDASIDNVVKVLDGLISEYETSCHGPGKWQ----KLATFLQQSSEGPILDLVKRLIDQIGSERS 84 (640)
Q Consensus 9 ~~~~~me~~l~~ac~~~~a~~~~~~~~l~~~l~~y~~s~~G~g~~~----k~~~~L~~~l~~~~~d~~~~~~~~i~~~~~ 84 (640)
..++.+++ |-++-|...-++|.|-..|=..+.+.-..-++|.+-+ .+..|+.+.=...-.+=.+.-|..+....+
T Consensus 178 ~~~~hI~k-li~~vln~~~~~d~iK~mIi~i~~e~~~~~~~~~~~~~~~~~i~~W~~~~~~~~~~~~~r~~~~~l~~~~~ 256 (1201)
T PF12128_consen 178 HQYQHIEK-LINAVLNKKLDFDFIKNMIIAILEEEIADGVSPPKSRLKKNDIDDWLRDIRASQGFEKVRPEFDKLQQQYR 256 (1201)
T ss_pred ccccChHH-HHHHHHhccccHHHHHHHHHHHHHhhccccccchhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35777887 6677788889999998888888888555666775544 566666655221111223333444444433
Q ss_pred HHHhhhcCchhHHHHHHHHHHhhHHh----HHHHHHHhhHHhHHHHHhhHHHHHHHHhHHhhhcchHHhHHhhHHhHHhh
Q 006565 85 SLMLKYRSIEDNMKLLKKQLEDSERY----KSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSL 160 (640)
Q Consensus 85 ~l~~~c~s~~~k~~~~~k~le~~~k~----~~~~~k~~e~~i~d~kk~~~~~~~~~~~l~~k~~s~ee~~~~l~k~le~~ 160 (640)
.|.. .+..+..++-.|-+.+.. ...+.......-..+.++.+.+......+...++.+...+..+...|+.+
T Consensus 257 ~l~~----~~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~~l~~~~~~L~~i 332 (1201)
T PF12128_consen 257 QLQA----LEQQLCHLHAELNADEQQLEQEQPELKEELNELNEELEKLEDEIKELRDELNKELSALNADLARIKSELDEI 332 (1201)
T ss_pred HHHH----HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3221 122333333333222211 11222222222233345555555555555555556666666666666665
Q ss_pred hhhhHHH
Q 006565 161 KNEISDW 167 (640)
Q Consensus 161 ~~e~~ew 167 (640)
......|
T Consensus 333 ~~~~~~y 339 (1201)
T PF12128_consen 333 EQQKKDY 339 (1201)
T ss_pred HHHHHHH
Confidence 5554444
No 16
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=99.23 E-value=2.3e-10 Score=120.54 Aligned_cols=155 Identities=23% Similarity=0.362 Sum_probs=134.3
Q ss_pred chhhhhhHHHHH----HHHHHHHhcCCCCcchhhHHHHHHHHHHhhhhcccCCchHHHHHHHHHHhhhchHHHHHHHHHh
Q 006565 2 EADIRCSSAIQS----MERKLRAACHSSDASIDNVVKVLDGLISEYETSCHGPGKWQKLATFLQQSSEGPILDLVKRLID 77 (640)
Q Consensus 2 ea~~~c~~~~~~----me~~l~~ac~~~~a~~~~~~~~l~~~l~~y~~s~~G~g~~~k~~~~L~~~l~~~~~d~~~~~~~ 77 (640)
.+...|.+.|+. |+++|+.+|.+|++.++.+++.++.++..|+.. ||||.+...||++||.+
T Consensus 119 ~s~~~C~~~l~~l~~~le~~l~~~~~~~~gg~~~~~~~~~~~~~~Y~~~---p~Kg~ka~evL~~fl~~----------- 184 (297)
T PF02841_consen 119 ASEKKCQALLQELFQPLEEKLKQGCYSKPGGYQLFLKELDELEKEYEQE---PGKGVKAEEVLQEFLQS----------- 184 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTTSSTTHHHHHHHHHHHHHHHHHHS---S---TTHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHhhc---CCCCccHHHHHHHHHHH-----------
Confidence 356789999999 999999999999999999999999999999998 99999999999999987
Q ss_pred HHHhHHHHHHhhhcCchhHHHHHHHHHHhhHHhHHHHHHHhhHHhHHHHHhhHHHHHHHHhHHhhhcchHHhHHhhHHhH
Q 006565 78 QIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTV 157 (640)
Q Consensus 78 ~i~~~~~~l~~~c~s~~~k~~~~~k~le~~~k~~~~~~k~~e~~i~d~kk~~~~~~~~~~~l~~k~~s~ee~~~~l~k~l 157 (640)
+.+....|-...+.|.+.++....++.+++.+..+.+.+.+........++.+++++++.+..|..+|
T Consensus 185 ------------~~~~~~~ilq~d~~L~~~ek~~~~~~~k~e~~e~e~~~l~e~~~~~~~~le~~~~~~ee~~~~L~ekm 252 (297)
T PF02841_consen 185 ------------KESMENSILQADQQLTEKEKEIEEEQAKAEAAEKEKEKLEEKQKEQEQMLEQQERSYEEHIKQLKEKM 252 (297)
T ss_dssp ------------CHHHHHHHHHH-TTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566667778888889999999999999999999999999999999999999999999999998
Q ss_pred HhhhhhhHHHHHHHHHHHhHhhHhhHHH
Q 006565 158 DSLKNEISDWKRKYDQVLTKQKAMEDQV 185 (640)
Q Consensus 158 e~~~~e~~ew~~kYe~~~~~~k~~~~~~ 185 (640)
+..+. .|..-|+..+..+......+
T Consensus 253 e~e~~---~~~~e~e~~l~~k~~eq~~~ 277 (297)
T PF02841_consen 253 EEERE---QLLQEQERLLEQKLQEQEEL 277 (297)
T ss_dssp HHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 88666 89999999988776665554
No 17
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.22 E-value=1.3e-05 Score=94.16 Aligned_cols=194 Identities=13% Similarity=0.209 Sum_probs=148.7
Q ss_pred HHhhHHHHHHHHhHHhhhcchHHhHHhhHHhHHhhhhhhHHHHHHHHHHHhHhhHhhHHHhhhHHHHhhhhHHHHHHHHH
Q 006565 126 KKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAA 205 (640)
Q Consensus 126 kk~~~~~~~~~~~l~~k~~s~ee~~~~l~k~le~~~~e~~ew~~kYe~~~~~~k~~~~~~AAGIsklK~Rkkeae~RL~a 205 (640)
+++++.-.+.|++|..-..-+++.+..|...++.+... -+....++..|++-...+-.|++.
T Consensus 230 q~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~------------------r~~~~k~le~~~s~~~~mK~k~d~ 291 (775)
T PF10174_consen 230 QTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEAD------------------RDRLDKQLEVYKSHSLAMKSKMDR 291 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc------------------hHHHHHHHHHHHhhHHHHHHHHHH
Confidence 55666666666666666666666666666555544443 233345666777777777778999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 206 AREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCL 285 (640)
Q Consensus 206 t~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a~L~er~~~~~q~r~~a~ree~~s~le~kE~kie~~k~ei~~aEq~l 285 (640)
+..+|.+-.-++.....+++++.+|..-....+.+++..+. ..+.+ .+-+++.++.+..+++.+...+..+...+
T Consensus 292 ~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~-~ke~~----~~~Lqsdve~Lr~rle~k~~~l~kk~~~~ 366 (775)
T PF10174_consen 292 LKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLR-AKEQE----AEMLQSDVEALRFRLEEKNSQLEKKQAQI 366 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-HHHHH----HHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998884 88888 88888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 286 TTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKV 342 (640)
Q Consensus 286 a~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~ 342 (640)
..++.+..-+.++|..+-..+...+..+..|..+++.+...+.....++..+...+.
T Consensus 367 ~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~ 423 (775)
T PF10174_consen 367 EKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLS 423 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888888877777777777777777777777777777777777666666666666555
No 18
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.21 E-value=5.2e-05 Score=93.54 Aligned_cols=105 Identities=17% Similarity=0.316 Sum_probs=51.3
Q ss_pred hhHHHHHHHHhHHhhhcchHHhHHhhHHhHHhhhhhhHHHHHHHHHHHhHhhHhhHHH-----------------hhhHH
Q 006565 128 LADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQV-----------------CSEIE 190 (640)
Q Consensus 128 ~~~~~~~~~~~l~~k~~s~ee~~~~l~k~le~~~~e~~ew~~kYe~~~~~~k~~~~~~-----------------AAGIs 190 (640)
....+..+.+.+...+..+......+..+++..+.....-..+++....+...+.... .+.+.
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 456 (1163)
T COG1196 377 LFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLE 456 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444444433333333222 22333
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 191 VLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAK 232 (640)
Q Consensus 191 klK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~QAK 232 (640)
.++.+...++..+......+.++.+.+.+.+..++.+...+.
T Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~ 498 (1163)
T COG1196 457 ELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQR 498 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444555555555555666666666666666666666544
No 19
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=99.19 E-value=4.3e-05 Score=90.92 Aligned_cols=468 Identities=18% Similarity=0.260 Sum_probs=280.4
Q ss_pred CcchhhHHHHHHHHHHhhhhcccCCchHH---HHHHHHHHhhhchHHHHHHHHH--hHHHhHHHHHHhhhcCchhHHHHH
Q 006565 26 DASIDNVVKVLDGLISEYETSCHGPGKWQ---KLATFLQQSSEGPILDLVKRLI--DQIGSERSSLMLKYRSIEDNMKLL 100 (640)
Q Consensus 26 ~a~~~~~~~~l~~~l~~y~~s~~G~g~~~---k~~~~L~~~l~~~~~d~~~~~~--~~i~~~~~~l~~~c~s~~~k~~~~ 100 (640)
+-.|.+=..=||.+|.-|+.-+--|.-|= +=-.||+++=-+-..-++-+.. ..|-.-++.....-.+.-+-|+++
T Consensus 154 grvVStKk~dl~~vv~~f~I~veNP~~~lsQD~aR~FL~~~~p~dkYklfmkaT~L~qi~~~~~~~~~~~~~~~~~i~~~ 233 (1074)
T KOG0250|consen 154 GRVVSTKKEDLDTVVDHFNIQVENPMFVLSQDAARSFLANSNPKDKYKLFMKATQLEQITESYSEIMESLDHAKELIDLK 233 (1074)
T ss_pred CccccccHHHHHHHHHHhCcCCCCcchhhcHHHHHHHHhcCChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555678999999999999999995 7778998873333322222221 233333333322222333333333
Q ss_pred HHHHHhhHHhHHHHHHHhh-------------HHhHHH-HHhhHHHHHHHHhHHhhhcchHHhHHhhHHhHHhhhhhhHH
Q 006565 101 KKQLEDSERYKSEYLKRYD-------------DAINDK-KKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISD 166 (640)
Q Consensus 101 ~k~le~~~k~~~~~~k~~e-------------~~i~d~-kk~~~~~~~~~~~l~~k~~s~ee~~~~l~k~le~~~~e~~e 166 (640)
..-|..+.|.-.+++..+. .---.+ -....++..+++++...+.-.++++..++..++.....-.+
T Consensus 234 ~e~i~~l~k~i~e~~e~~~~~~~~e~~~~~l~~Lk~k~~W~~V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~ 313 (1074)
T KOG0250|consen 234 EEEIKNLKKKIKEEEEKLDNLEQLEDLKENLEQLKAKMAWAWVNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEE 313 (1074)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333322 111111 23456777888888899999999999999998887777666
Q ss_pred HHHHHHHHHhHhhHhhHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006565 167 WKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTS 246 (640)
Q Consensus 167 w~~kYe~~~~~~k~~~~~~AAGIsklK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a~L~er~~ 246 (640)
+..+|- +.. |.|..++--.......+..++++++-++-+..+++.+|....+.-++.......+..++.
T Consensus 314 ~r~k~t----eie-------a~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~ 382 (1074)
T KOG0250|consen 314 ARQKLT----EIE-------AKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIA 382 (1074)
T ss_pred Hhhhhh----HHH-------HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 664443 233 334444444555566777777788888888888888888888877777777777777765
Q ss_pred HHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHH
Q 006565 247 KEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAK 326 (640)
Q Consensus 247 ~~~q~r~~a~ree~~s~le~kE~kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~e 326 (640)
..+.+. ......++++.+++++.+..++...+..++.++.+++....+++.-+.+....+..+..|..+.......
T Consensus 383 -~~~~~~---~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~ 458 (1074)
T KOG0250|consen 383 -DLEKQT---NNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEE 458 (1074)
T ss_pred -HHHHHH---HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555551 3555666666677777777777777777777766666666666666655555555555555555444444
Q ss_pred HHHHHH-----------HHHHHHHHHHHHHHHH-------------------HHHH------------------------
Q 006565 327 AQSFER-----------EARIMEQDKVYLEQKY-------------------KSEF------------------------ 352 (640)
Q Consensus 327 ies~e~-----------el~~L~~ei~~L~ekl-------------------~se~------------------------ 352 (640)
+..+.. ..-.|-..|.+-.-.+ ...-
T Consensus 459 l~~lk~~k~dkvs~FG~~m~~lL~~I~r~~~~f~~~P~GPlG~~Vtl~~~KWa~aIE~~L~n~lnaFiv~sh~D~~~Lr~ 538 (1074)
T KOG0250|consen 459 LKDLKKTKTDKVSAFGPNMPQLLRAIERRKRRFQTPPKGPLGKYVTLKEPKWALAIERCLGNLLNAFIVTSHKDARILRA 538 (1074)
T ss_pred HHHHHhcccchhhhcchhhHHHHHHHHHHHhcCCCCCCCCccceeEecCcHHHHHHHHHHHHhhhhheeCCHhhHHHHHH
Confidence 333321 2222222232221110 0000
Q ss_pred --------------------------------------------------------------------------------
Q 006565 353 -------------------------------------------------------------------------------- 352 (640)
Q Consensus 353 -------------------------------------------------------------------------------- 352 (640)
T Consensus 539 i~~~~~~~~~~ptIvvs~~~~~~y~~~~~p~~~~pTil~~le~ddp~V~N~LID~s~iE~~lLiEdk~Ea~~~m~s~~~p 618 (1074)
T KOG0250|consen 539 IMRRLKIPGNRPTIVVSSFTPFDYSVGRNPGYEFPTILDALEFDDPEVLNVLIDKSGIEQVLLIEDKKEAREFMQSDKPP 618 (1074)
T ss_pred HHHHcCCCCCCCcEEEecCCccccccccCCCCCCCceeeeeecCChHHHHHhhhhccceeEEEecchHHHHHHHhcCCCC
Confidence
Q ss_pred ------------------------------HH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 006565 353 ------------------------------ER-----FEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLA 397 (640)
Q Consensus 353 ------------------------------er-----~ee~~~rleeaEee~kea~e~~~~areead~aq~E~~elQr~~ 397 (640)
-+ -......++.++.++.....+.-..+-..+.+.....++++..
T Consensus 619 ~n~~~aytldg~~~~~~g~~~~~ySt~~~~~r~~~~~~~s~d~~ie~le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~ 698 (1074)
T KOG0250|consen 619 ANVTKAYTLDGRQIFAGGPNYRVYSTRGTRARRPGVDEFSFDDEIEDLEREASRLQKEILELENQRREAEKNLEELEKKL 698 (1074)
T ss_pred ccceeeeccCccccccCCCCcceeccCCCCCCCccccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 1122344444555555555544444444444455555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHH--HHhhhcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 006565 398 MERMAVIERVQRQIESLERQKTDLTN--EVNRIRESELEALSK-VALLEARVEEREKEIESLLESNNEQRASTVKKLEDL 474 (640)
Q Consensus 398 ~qrlaeIerl~~qIE~lEre~e~Le~--E~~~l~~sEl~al~k-v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~ 474 (640)
.++-.+|..+++.+-....++..|.. +...+..+.++.+.. +...+..|++-+...+.+ +...+++....+.+...
T Consensus 699 ~~l~~~~~q~~~~~~~~~~em~el~n~~e~~~~~~~~~~~l~~ei~~~~~eIe~~~~~~e~l-~~e~e~~~~e~~e~~~~ 777 (1074)
T KOG0250|consen 699 RELSEHIEQIKRRIRKKRAEMTELKNTAEEKQVDISKLEDLAREIKKKEKEIEEKEAPLEKL-KEELEHIELEAQELEEY 777 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555 233344334555555 666666777777777877 88888888888999999
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 006565 475 LESERRSRAAANAMAERLSLEVQSAQAKLDEMQQE 509 (640)
Q Consensus 475 le~~re~l~e~nrrleal~~e~~~lqs~id~Leg~ 509 (640)
.+..+..+.....+++++..++....+++.+.++.
T Consensus 778 ~~~~~~~l~~e~~~l~~l~~el~~r~dk~~s~e~~ 812 (1074)
T KOG0250|consen 778 YAAGREKLQGEISKLDALKEELKLREDKLRSAEDE 812 (1074)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhh
Confidence 99999999999999999999999999988884443
No 20
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=99.12 E-value=3.8e-05 Score=95.66 Aligned_cols=356 Identities=19% Similarity=0.267 Sum_probs=220.1
Q ss_pred hhHHHHHHHHHHhhHHhHHHHHHHhhHHhHHHHHhhHHHHHHHHhHHhhhcchHHhHHhhHHhHHhhhhhhHH---HHHH
Q 006565 94 EDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISD---WKRK 170 (640)
Q Consensus 94 ~~k~~~~~k~le~~~k~~~~~~k~~e~~i~d~kk~~~~~~~~~~~l~~k~~s~ee~~~~l~k~le~~~~e~~e---w~~k 170 (640)
+..+.-+-..|+.....+..-.+-++..|.++++-.-.+.+....+.....--.+|+..|++.+|..+++... -...
T Consensus 635 e~~l~qLe~~le~~~~E~~~~~~~l~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~ 714 (1822)
T KOG4674|consen 635 EKRLRQLENELESYKKEKRENLKKLQEDFDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVETLEERNKN 714 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555557777778889999999999999999999999999999999999999999999999994 4455
Q ss_pred HHHHHhHhhHhhHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHh
Q 006565 171 YDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQ 250 (640)
Q Consensus 171 Ye~~~~~~k~~~~~~AAGIsklK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a~L~er~~~~~q 250 (640)
|...|.+++.....++.....-.+....+...+...++.=....+-=.-....|..|......-...+..++...+ ..+
T Consensus 715 l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~-~~e 793 (1822)
T KOG4674|consen 715 LQSTISKQEQTVHTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQKN-ELE 793 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 6677777776555566666555555555555555554444444444444455666677666666677778888886 888
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHH
Q 006565 251 QREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLEL----KAAESKMRSYEVEISSQKLETKELSEKLEAVNAK 326 (640)
Q Consensus 251 ~r~~a~ree~~s~le~kE~kie~~k~ei~~aEq~la~~q~eL----~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~e 326 (640)
.-+.|.+..+.+++..++..+..++.++......+..++..+ .++...|.....++..+...++.+...+..+..+
T Consensus 794 ~s~~~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k 873 (1822)
T KOG4674|consen 794 ESEMATKDKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIK 873 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999999999988888888875433 5555555555555555555555544444444444
Q ss_pred HHHHHHHHHHHHHHHHHH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 327 AQSFEREARIMEQDKVYL--------------------------EQKYKSEFERFEEVQERCKVAEKEAKKATELADRER 380 (640)
Q Consensus 327 ies~e~el~~L~~ei~~L--------------------------~ekl~se~er~ee~~~rleeaEee~kea~e~~~~ar 380 (640)
+..+++++.........+ ..++......+......+...+..+.......+..+
T Consensus 874 ~~eL~k~l~~~~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~ 953 (1822)
T KOG4674|consen 874 LSELEKRLKSAKTQLLNLDSKSSNEDATILEDTLRKELEEITDLKEELTDALSQIREYQEEYSSLEQSLESVKSELDETR 953 (1822)
T ss_pred HHHHHHHHHHhHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444443333333 333333333344444444444444444444444444
Q ss_pred HHHHHHHh----hHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhHHHHhhhcHHHHHHHHH-HHHHHHHHHHHHH
Q 006565 381 AEAAAARK----GKSEFENLAMERMAVIERVQ----RQIESLERQKTDLTNEVNRIRESELEALSK-VALLEARVEEREK 451 (640)
Q Consensus 381 eead~aq~----E~~elQr~~~qrlaeIerl~----~qIE~lEre~e~Le~E~~~l~~sEl~al~k-v~~lE~~vee~e~ 451 (640)
..+++... +...+...++.+.++|..+. ..+...+.+..++.+++..++ +|+..+.. .......+.....
T Consensus 954 ~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~k~~e~~~~~~~~e~~sl~-ne~~~~~~~~s~~~~~~~~~k~ 1032 (1822)
T KOG4674|consen 954 LELEAKIESLHKKITSLEEELSELEKEIENLREELELSTKGKEDKLLDLSREISSLQ-NELKSLLKAASQANEQIEDLQN 1032 (1822)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 44433322 22223333344444444443 333444555555666666666 55444444 4444444444433
No 21
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.11 E-value=9.1e-05 Score=87.31 Aligned_cols=187 Identities=15% Similarity=0.203 Sum_probs=113.6
Q ss_pred hHHhHHHHHhhHHHHHHHHhHHhhhcchHHhHHhhHHhHHhhhhhhHHHHHHHHHHHhHhhHhhHHHhhhHHHHhhhhHH
Q 006565 119 DDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTA 198 (640)
Q Consensus 119 e~~i~d~kk~~~~~~~~~~~l~~k~~s~ee~~~~l~k~le~~~~e~~ew~~kYe~~~~~~k~~~~~~AAGIsklK~Rkke 198 (640)
+..|..+-|-+.+...++..|+..+...+.-...+.|+|+.-+.+..--+.||+.+=-+-. .--+.|..++++...
T Consensus 237 d~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~----rk~~E~~~~qt~l~~ 312 (775)
T PF10174_consen 237 DTKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELS----RKKSELEALQTRLET 312 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 3455566566666899999999999988888999999999999999999999888644322 223445555566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 006565 199 AEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKI 278 (640)
Q Consensus 199 ae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a~L~er~~~~~q~r~~a~ree~~s~le~kE~kie~~k~ei 278 (640)
+..-....+..++-.++-+.--...+..|.....+..-++..-...++ ..+.. ...+..+.++...+|..++..+
T Consensus 313 ~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~-kk~~~----~~~~qeE~~~~~~Ei~~l~d~~ 387 (775)
T PF10174_consen 313 LEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLE-KKQAQ----IEKLQEEKSRLQGEIEDLRDML 387 (775)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666666666666666555555555555554 44444 3444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHH
Q 006565 279 EHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETK 314 (640)
Q Consensus 279 ~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~ 314 (640)
...+.++..++..+..++..++.....+..+..++.
T Consensus 388 d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~ 423 (775)
T PF10174_consen 388 DKKERKINVLQKKIENLEEQLREKDRQLDEEKERLS 423 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444444444444444444444444443333
No 22
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=99.05 E-value=9.6e-05 Score=84.07 Aligned_cols=164 Identities=16% Similarity=0.206 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 006565 343 YLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLT 422 (640)
Q Consensus 343 ~L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~areead~aq~E~~elQr~~~qrlaeIerl~~qIE~lEre~e~Le 422 (640)
.+...+.+....++.....+..+..+.......+...+.++...+.+...+++........|..|...+.....+++...
T Consensus 278 ~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~ 357 (522)
T PF05701_consen 278 ELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAK 357 (522)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHhhhcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 006565 423 NEVNRIRESELEALSK-VALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQA 501 (640)
Q Consensus 423 ~E~~~l~~sEl~al~k-v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~l~e~nrrleal~~e~~~lqs 501 (640)
..-.+.+ .....+.. +..+....+....+.+.. ..........++.....+......|..+.+.+++.+.--...-.
T Consensus 358 ~~e~~~k-~~~~~l~~~Lqql~~Eae~Ak~ea~~~-~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKasEa~Ala 435 (522)
T PF05701_consen 358 AEEEKAK-EAMSELPKALQQLSSEAEEAKKEAEEA-KEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKASEALALA 435 (522)
T ss_pred hhhcchh-hhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443333 33333444 444444444444444433 44444444444444444444444444444444444443333444
Q ss_pred HHHHHHH
Q 006565 502 KLDEMQQ 508 (640)
Q Consensus 502 ~id~Leg 508 (640)
.|..|.+
T Consensus 436 ~ik~l~e 442 (522)
T PF05701_consen 436 EIKALSE 442 (522)
T ss_pred HHHHhhc
Confidence 4443333
No 23
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=99.03 E-value=3.8e-07 Score=93.44 Aligned_cols=227 Identities=20% Similarity=0.223 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 270 EMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYK 349 (640)
Q Consensus 270 kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~ 349 (640)
++..++.++..++..+..+...|..........+.++..+..+|..|...++.+...+.....++..+....++....+.
T Consensus 2 K~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k 81 (237)
T PF00261_consen 2 KIQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARK 81 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666666666666666666666666666666666666666666666666666666655566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhc
Q 006565 350 SEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIR 429 (640)
Q Consensus 350 se~er~ee~~~rleeaEee~kea~e~~~~areead~aq~E~~elQr~~~qrlaeIerl~~qIE~lEre~e~Le~E~~~l~ 429 (640)
....+......++..++..++.+...+..+-..++ ++.+.+......++++....+.++..+..|+.++..+.
T Consensus 82 ~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~-------E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~ 154 (237)
T PF00261_consen 82 VLENREQSDEERIEELEQQLKEAKRRAEEAERKYE-------EVERKLKVLEQELERAEERAEAAESKIKELEEELKSVG 154 (237)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH-------HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHH
Confidence 66666666666666666665555555555533333 33444444444444444444444444444444444444
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 006565 430 ESELEALSK-VALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDE 505 (640)
Q Consensus 430 ~sEl~al~k-v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~l~e~nrrleal~~e~~~lqs~id~ 505 (640)
..+..++- ......+.+..+..|..| ...+..........+..+..+...+......+..-+..+..++..+|.
T Consensus 155 -~~lk~lE~~~~~~~~re~~~e~~i~~L-~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~ 229 (237)
T PF00261_consen 155 -NNLKSLEASEEKASEREDEYEEKIRDL-EEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQ 229 (237)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHhhhhhhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44333333 333333333333333333 333333333333333333333333333333333333333344444433
No 24
>PRK04863 mukB cell division protein MukB; Provisional
Probab=99.01 E-value=4.3e-05 Score=95.65 Aligned_cols=149 Identities=15% Similarity=0.188 Sum_probs=98.6
Q ss_pred HHHHHHHHhHHHhHHHHHHhhhcCchhHHHHHHHHHHhhHHhHHHHHHHhhHHhHHHHHhhHHHHHHHHh-HHhhhcchH
Q 006565 69 LDLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINN-LQGENISLR 147 (640)
Q Consensus 69 ~d~~~~~~~~i~~~~~~l~~~c~s~~~k~~~~~k~le~~~k~~~~~~k~~e~~i~d~kk~~~~~~~~~~~-l~~k~~s~e 147 (640)
.+|...+++. -.+...|+|++++=. +-+.+... -|-+|+.+..+-+-+|--..+. +..=+..|.
T Consensus 172 ~~Y~~~Ll~q-----G~f~~~L~a~~dR~k-F~kLf~ta---------iy~~i~~~i~~fl~~yll~e~~~v~~~i~~m~ 236 (1486)
T PRK04863 172 TDYHSLMFDL-----GIIPRRLRSSSDRSK-FYRLIEAS---------LYGGISSAITRSLRDYLLPENSGVRKAFQDME 236 (1486)
T ss_pred HHHHHHHHHC-----CCchhhhhccchHHH-HHHHHHHH---------HHhhHHHhHHHHHHHHcCCCChhhhHHHHHHH
Confidence 5666666644 335666666655554 34544443 3556666666666666555444 443355555
Q ss_pred HhHHhhHHhHHhhhhhh------------------HHHHHHHHHHHhHhhHhhHHHhhhHHHHhhhhHHHHHHHHHHHHH
Q 006565 148 EKSSSLSKTVDSLKNEI------------------SDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQ 209 (640)
Q Consensus 148 e~~~~l~k~le~~~~e~------------------~ew~~kYe~~~~~~k~~~~~~AAGIsklK~Rkkeae~RL~at~en 209 (640)
+-+-...-+|++.+.-. ++|.+-=+ +....=+.+ +.|+.++.+++.+|..+..+
T Consensus 237 ~~l~~~r~t~~~~~~tq~drdlFk~lI~~~~~~~aad~~r~~e----ERR~liEEA----ag~r~rk~eA~kkLe~tE~n 308 (1486)
T PRK04863 237 AALRENRMTLEAIRVTQSDRDLFKHLITESTNYVAADYMRHAN----ERRVHLEEA----LELRRELYTSRRQLAAEQYR 308 (1486)
T ss_pred HHHHHHHHHHHHHHhCccHHHHHHHHhhhhhhhhHHHHhhCHH----HHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 55556666666665443 44544322 344444444 55779999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 210 ALSAQEEVEEWKRKYGVAVREAKAALEKAAI 240 (640)
Q Consensus 210 L~RVkDel~Ewkrky~~L~~QAKkAeek~a~ 240 (640)
+.++.|++.|+..++..|..|+.++..-...
T Consensus 309 L~rI~diL~ELe~rL~kLEkQaEkA~kyleL 339 (1486)
T PRK04863 309 LVEMARELAELNEAESDLEQDYQAASDHLNL 339 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999855443
No 25
>PRK01156 chromosome segregation protein; Provisional
Probab=98.99 E-value=0.00029 Score=84.57 Aligned_cols=28 Identities=14% Similarity=0.261 Sum_probs=11.4
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 006565 301 SYEVEISSQKLETKELSEKLEAVNAKAQ 328 (640)
Q Consensus 301 ~~e~ei~~le~el~~L~ekle~~~~eie 328 (640)
.+..++..++.++..|..+...+..++.
T Consensus 473 ~~~~~i~~l~~~i~~l~~~~~~l~~~~~ 500 (895)
T PRK01156 473 HYNEKKSRLEEKIREIEIEVKDIDEKIV 500 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444433333333
No 26
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.91 E-value=0.00082 Score=84.29 Aligned_cols=168 Identities=17% Similarity=0.239 Sum_probs=118.2
Q ss_pred hHHHHHHHHHHhhHHhHHHHHHHhh---HHhHHH----HHhhHHHHHHHHhHHhhhcchHHhHHhhHHhHHhhhhhhHHH
Q 006565 95 DNMKLLKKQLEDSERYKSEYLKRYD---DAINDK----KKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDW 167 (640)
Q Consensus 95 ~k~~~~~k~le~~~k~~~~~~k~~e---~~i~d~----kk~~~~~~~~~~~l~~k~~s~ee~~~~l~k~le~~~~e~~ew 167 (640)
.++..+..+|..+......|+.-|. .++.-. -..--.+.+++..+..+..|+|++++-|.+.+.....++.--
T Consensus 912 eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~ 991 (1822)
T KOG4674|consen 912 EEITDLKEELTDALSQIREYQEEYSSLEQSLESVKSELDETRLELEAKIESLHKKITSLEEELSELEKEIENLREELELS 991 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4667777777777777777776553 333332 223345677888888899999999888888888888777555
Q ss_pred HHHHHHHHhHhhHhhHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 006565 168 KRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSK 247 (640)
Q Consensus 168 ~~kYe~~~~~~k~~~~~~AAGIsklK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a~L~er~~~ 247 (640)
.+.-+.-+.+..+.-+.+-.....+....+++...+..++.++.-....+..-..+|+.=.-+...+-..+..+.....
T Consensus 992 ~k~~e~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~k~dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~- 1070 (1822)
T KOG4674|consen 992 TKGKEDKLLDLSREISSLQNELKSLLKAASQANEQIEDLQNDLKTETEQLRKAQSKYESELVQHADLTQKLIKLREEFA- 1070 (1822)
T ss_pred ccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 5555555555555555566666667777777777777778888777777777788998888888888877777777764
Q ss_pred HHhhhHHHHHHHHhHH
Q 006565 248 EMQQREDVLREEFSST 263 (640)
Q Consensus 248 ~~q~r~~a~ree~~s~ 263 (640)
..++.+-.|+..+...
T Consensus 1071 ~~~~e~~~Lk~~~~~~ 1086 (1822)
T KOG4674|consen 1071 KCNDELLKLKKSRESR 1086 (1822)
T ss_pred HHHHHHHHHHhhHHHH
Confidence 6666655555555444
No 27
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.82 E-value=7.9e-06 Score=83.79 Aligned_cols=29 Identities=21% Similarity=0.302 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006565 465 ASTVKKLEDLLESERRSRAAANAMAERLS 493 (640)
Q Consensus 465 ~~~l~~le~~le~~re~l~e~nrrleal~ 493 (640)
..+|..++..|...+.........++...
T Consensus 203 e~~id~le~eL~~~k~~~~~~~~eld~~l 231 (237)
T PF00261_consen 203 EKEIDRLEDELEKEKEKYKKVQEELDQTL 231 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555554433
No 28
>PRK01156 chromosome segregation protein; Provisional
Probab=98.81 E-value=0.0012 Score=79.42 Aligned_cols=6 Identities=33% Similarity=0.634 Sum_probs=2.7
Q ss_pred ccCCch
Q 006565 47 CHGPGK 52 (640)
Q Consensus 47 ~~G~g~ 52 (640)
.+|+|.
T Consensus 134 ~~~Qg~ 139 (895)
T PRK01156 134 FVGQGE 139 (895)
T ss_pred EEeccc
Confidence 344444
No 29
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.81 E-value=0.00026 Score=84.79 Aligned_cols=328 Identities=17% Similarity=0.210 Sum_probs=180.2
Q ss_pred HHHHHHHhHHhhhcchHHhHHh---hHHhHHhhhhhhHHHHHHHHHHHhHhhHhhHHHhhhHHHHhhhhHHHHHHHHHHH
Q 006565 131 DYTSRINNLQGENISLREKSSS---LSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAR 207 (640)
Q Consensus 131 ~~~~~~~~l~~k~~s~ee~~~~---l~k~le~~~~e~~ew~~kYe~~~~~~k~~~~~~AAGIsklK~Rkkeae~RL~at~ 207 (640)
..+.|...|--.|+--+-++.. -.+.||..+.++.+|..+.-+..--+- -.++-...++.+|+....
T Consensus 271 ~~~~rv~~L~e~~sek~~~~k~~e~ek~~lE~~k~~al~fL~kenel~~~~~----------~~~q~~~~~~~~ki~~~~ 340 (1293)
T KOG0996|consen 271 ELMRRVERLNEDRSEKENRVKLVEKEKKALEGPKNEALEFLKKENELFRKKN----------KLCQYILYESRAKIAEMQ 340 (1293)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
Confidence 3333444444344333333333 234566666677777777666553222 234555566777888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 208 EQALSAQEEVEEWKRKYGVAVREAKAAL-EKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLT 286 (640)
Q Consensus 208 enL~RVkDel~Ewkrky~~L~~QAKkAe-ek~a~L~er~~~~~q~r~~a~ree~~s~le~kE~kie~~k~ei~~aEq~la 286 (640)
+.+......+-+...+.++..+.-..-. ..-..+.++. ....++....+.++...+.+-.
T Consensus 341 ~~~~~~~e~lk~~~ek~~~e~~~~~~k~e~~~~~~~e~~-------------------~~~kn~~~~~k~~~~~~e~~~v 401 (1293)
T KOG0996|consen 341 EELEKIEEGLKDENEKFDIESNEEVEKNEAVKKEIKERA-------------------KELKNKFESLKKKFQDLEREDV 401 (1293)
T ss_pred HHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888777775554322211 1111122222 1222234444445555555555
Q ss_pred HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q 006565 287 TLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYL----EQKYKSEFERFEEVQERC 362 (640)
Q Consensus 287 ~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L----~ekl~se~er~ee~~~rl 362 (640)
..+..|.-..++|+.++.++......+..+..-.+.....++....++..|....... .+.+.+..++-+-.....
T Consensus 402 k~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~ 481 (1293)
T KOG0996|consen 402 KREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEI 481 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 5555555556666666666666666666665555555555555555555554444333 333334444444555666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHH-HHH
Q 006565 363 KVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSK-VAL 441 (640)
Q Consensus 363 eeaEee~kea~e~~~~areead~aq~E~~elQr~~~qrlaeIerl~~qIE~lEre~e~Le~E~~~l~~sEl~al~k-v~~ 441 (640)
...++++.-.......++.+++.++.+..-+-....+.....+.+...++.....+ .... .++..+.. +..
T Consensus 482 ~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~-------~e~~-~~l~~~k~~l~~ 553 (1293)
T KOG0996|consen 482 EKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESL-------KEKK-TELDDLKEELPS 553 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH-HHHHHHHHhhhh
Confidence 66777777777777777777777777777666655555555555544444443333 2233 33333333 444
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 006565 442 LEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKL 503 (640)
Q Consensus 442 lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~l~e~nrrleal~~e~~~lqs~i 503 (640)
+...+.+...++..+ ..+..++...+...|+.+.++..-+..-+..-++|++.+
T Consensus 554 ~k~e~~~~~k~l~~~--------~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~~kVl~al~ 607 (1293)
T KOG0996|consen 554 LKQELKEKEKELPKL--------RKEERNLKSQLNKLRQRVEEAKSSLSSSRSRNKVLDALM 607 (1293)
T ss_pred HHHHHHHHHHhHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 444444444455544 555555666666666666666666666666666777766
No 30
>KOG2037 consensus Guanylate-binding protein [General function prediction only]
Probab=98.78 E-value=1e-06 Score=99.64 Aligned_cols=270 Identities=20% Similarity=0.138 Sum_probs=204.6
Q ss_pred CchhhhhhHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHhhhhcccCCchHHHHHHHHHHhhhchHHHHHHHHHhHHH
Q 006565 1 MEADIRCSSAIQSMERKLRAACHSSDASIDNVVKVLDGLISEYETSCHGPGKWQKLATFLQQSSEGPILDLVKRLIDQIG 80 (640)
Q Consensus 1 ~ea~~~c~~~~~~me~~l~~ac~~~~a~~~~~~~~l~~~l~~y~~s~~G~g~~~k~~~~L~~~l~~~~~d~~~~~~~~i~ 80 (640)
++++..|++.+. |+.+++|+++++|.+.-+.+|.. ++.+...+|.|..-+++...+
T Consensus 222 ~~s~~~c~~~~~----------~~~~~~l~~~l~v~~~~~~el~~--------------~r~~~~~~~~d~~c~~~~~~~ 277 (552)
T KOG2037|consen 222 DQSFPFCSYIGE----------HGGTKNLDNRLKVNGPQLEELVQ--------------LRVHARSCFEDLPCFLNPHPG 277 (552)
T ss_pred HhhhhhhHHHHH----------hccccccccceeecccchHHHHH--------------HHHHHHhhccCcchhhcCchh
Confidence 467889999998 99999999999999999999998 899999999999999999999
Q ss_pred hHHHHHHhhhcCchhHHHHHHHHHHhhHHhHHHHHHHhhHHhHHHHHhhHHHHHHHHhHHhhhcchHHhHHhhHHhHHhh
Q 006565 81 SERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSL 160 (640)
Q Consensus 81 ~~~~~l~~~c~s~~~k~~~~~k~le~~~k~~~~~~k~~e~~i~d~kk~~~~~~~~~~~l~~k~~s~ee~~~~l~k~le~~ 160 (640)
..-...-++-.+-.|=++.+.+||+ .+.....|+++|...+.+-+ ++.
T Consensus 278 l~~~~n~~~~~~~~~~~~~~~~ql~-~~~p~~~~q~~l~~~~~~~~-------------------------------~~t 325 (552)
T KOG2037|consen 278 LAVAENPAFDGKLEDHYNQFMGQLK-VELPNLLLQELLDEKEISGR-------------------------------EVT 325 (552)
T ss_pred hhcccCchhhhhHHHHHHHHHHHHh-hhhhHHhhhhhccccccCcc-------------------------------chh
Confidence 9999999999999999999999999 99999999999998887766 888
Q ss_pred hhhhHHHHHHHHHHHhHhhHhhHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 161 KNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAI 240 (640)
Q Consensus 161 ~~e~~ew~~kYe~~~~~~k~~~~~~AAGIsklK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a~ 240 (640)
..+..+|.+.|+++...+.... +-.. ++ -..+...+ +..+. ...|.+-+..
T Consensus 326 ~~~~~e~fk~y~~i~q~~~g~~------lp~p---ks-~l~~~aea--~~l~~-----------------va~ak~~~~~ 376 (552)
T KOG2037|consen 326 CREMKEYFKAYDKIFQKKLGET------LPGP---KS-MLKANAEA--SSLAA-----------------VAAAKDIYGP 376 (552)
T ss_pred HHHHHHHHHHHHHHhhHhhhhh------CcCc---cc-HHHHHHHH--hhHHH-----------------HHHHHHHHhh
Confidence 8999999999999998665322 2211 11 11111100 00000 1122222222
Q ss_pred HHHhhhHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHH
Q 006565 241 VQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKL 320 (640)
Q Consensus 241 L~er~~~~~q~r~~a~ree~~s~le~kE~kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekl 320 (640)
+-+++. .-. .-.....|+.++
T Consensus 377 ~~Eev~-~G~----------------------------------------------------------~~~~~s~L~~~~ 397 (552)
T KOG2037|consen 377 LMEEVK-GGD----------------------------------------------------------IYLSPSGLNLKH 397 (552)
T ss_pred hhhhhh-cCc----------------------------------------------------------eeecccHHHHHH
Confidence 222221 000 223334455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 006565 321 EAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMER 400 (640)
Q Consensus 321 e~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~areead~aq~E~~elQr~~~qr 400 (640)
...+.....+..+.... ....+.+....+.++++..++-..........+.+..++..+..++.....++....+.
T Consensus 398 d~~k~~a~~~~~e~rK~----ig~~e~~~~~lq~LE~v~~~l~~~~~~~~~s~~~~~~~r~~A~a~~~~~~~~~~~~~~~ 473 (552)
T KOG2037|consen 398 DKVKELALKYFTEPRKG----IGAEEVCQRYLQSLESVEEELLQTDQALTESKKLFLAARTPAEAAAKEAILLILSGLEG 473 (552)
T ss_pred HHHHHHHHHHHhhhhhh----hcHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555443 45566677777888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 006565 401 MAVIERVQRQIESLERQK 418 (640)
Q Consensus 401 laeIerl~~qIE~lEre~ 418 (640)
...|++....++....++
T Consensus 474 ~~~me~~a~~~~~~~~q~ 491 (552)
T KOG2037|consen 474 FIGMEIAARLIEETMKQL 491 (552)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999988888887775
No 31
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.74 E-value=0.0026 Score=79.08 Aligned_cols=42 Identities=14% Similarity=0.257 Sum_probs=20.9
Q ss_pred HhHHhhhhhhHHHHHHHHHHHhHhhHhhHHHhhhHHHHhhhh
Q 006565 155 KTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRS 196 (640)
Q Consensus 155 k~le~~~~e~~ew~~kYe~~~~~~k~~~~~~AAGIsklK~Rk 196 (640)
.++...+.+...+...|.........++..|...+.+++...
T Consensus 352 ~~l~~~~~~~~~l~~~~~~Lt~~~~di~~ky~~~~~~l~~~~ 393 (1201)
T PF12128_consen 352 DQLPEWRNELENLQEQLDLLTSKHQDIESKYNKLKQKLEEAF 393 (1201)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555555555555555555444444
No 32
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=98.73 E-value=5.3e-05 Score=90.21 Aligned_cols=249 Identities=19% Similarity=0.249 Sum_probs=166.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 006565 201 ARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEH 280 (640)
Q Consensus 201 ~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a~L~er~~~~~q~r~~a~ree~~s~le~kE~kie~~k~ei~~ 280 (640)
.-|....+.+++++.++......+..+..+-+.+++++..++... ....+ ..++...+.|.-
T Consensus 214 ~~~~~~~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~~e--~~~~~----l~~Lk~k~~W~~------------ 275 (1074)
T KOG0250|consen 214 ESYSEIMESLDHAKELIDLKEEEIKNLKKKIKEEEEKLDNLEQLE--DLKEN----LEQLKAKMAWAW------------ 275 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH--HHHHH----HHHHHHHHHHHH------------
Confidence 345555666777777888888888888888888888887776654 46666 777888888877
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 281 AEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQE 360 (640)
Q Consensus 281 aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~ 360 (640)
+.+.+..+..++..|...++.+..+.++.+....++..+... +-+.+.
T Consensus 276 -----------V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k---------------------~teiea 323 (1074)
T KOG0250|consen 276 -----------VNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQK---------------------LTEIEA 323 (1074)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------------------hhHHHH
Confidence 344444444444555555555555555444444444333333 233333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-hhhcHHHHHHHHH-
Q 006565 361 RCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEV-NRIRESELEALSK- 438 (640)
Q Consensus 361 rleeaEee~kea~e~~~~areead~aq~E~~elQr~~~qrlaeIerl~~qIE~lEre~e~Le~E~-~~l~~sEl~al~k- 438 (640)
.+..+-.+.....++++.++..++.++.++.+++-++-..++.|..+...++.+++++.++..+. ..+. .++.....
T Consensus 324 ~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~-~~~~e~e~k 402 (1074)
T KOG0250|consen 324 KIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELG-SELEERENK 402 (1074)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhHHHHHHH
Confidence 34444455555666666677777777777777777777777777777777777777777777777 4555 67777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 006565 439 VALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQA 501 (640)
Q Consensus 439 v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~l~e~nrrleal~~e~~~lqs 501 (640)
+..|...|+..+..+..| ..+.+.+.+.+..-+.++..+...+....+.++..+-+++.++.
T Consensus 403 ~~~L~~evek~e~~~~~L-~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~ 464 (1074)
T KOG0250|consen 403 LEQLKKEVEKLEEQINSL-REELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKK 464 (1074)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777777777777777777 77777777777777777777777777777777777766666654
No 33
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.72 E-value=8.1e-05 Score=84.13 Aligned_cols=306 Identities=16% Similarity=0.198 Sum_probs=213.1
Q ss_pred HHhhHHHHHHHHhHHhhhcchHHhHHhhHHhHHhhh----hhhHHHHHHHHHHHhHhhHhhHHHhhhHHHHhhhhHHHHH
Q 006565 126 KKLADDYTSRINNLQGENISLREKSSSLSKTVDSLK----NEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEA 201 (640)
Q Consensus 126 kk~~~~~~~~~~~l~~k~~s~ee~~~~l~k~le~~~----~e~~ew~~kYe~~~~~~k~~~~~~AAGIsklK~Rkkeae~ 201 (640)
|+-+-+.-.|.++-.-|.+.||....-|.-.++-.+ ++.+.-+-.|+.-|..-+.+-++.+++.++
T Consensus 41 K~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~---------- 110 (546)
T KOG0977|consen 41 KKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAK---------- 110 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHH----------
Confidence 444445556777777888888888888888887654 567778888888888777777777766664
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 006565 202 RLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHA 281 (640)
Q Consensus 202 RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a~L~er~~~~~q~r~~a~ree~~s~le~kE~kie~~k~ei~~a 281 (640)
+..++.++++++.+.+++|.....-+..+++++......++ .++.. ...+.+-+.-++.+...++.+....
T Consensus 111 ----~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~-~leAe----~~~~krr~~~le~e~~~Lk~en~rl 181 (546)
T KOG0977|consen 111 ----LEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLS-ELEAE----INTLKRRIKALEDELKRLKAENSRL 181 (546)
T ss_pred ----HHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhh-hhhhH----HHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 45677788899999999999999999999999999999996 88888 8888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHH-HHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH
Q 006565 282 EQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEA-VNAKAQSFEREA---------RIMEQDKVYLEQKYKSE 351 (640)
Q Consensus 282 Eq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~-~~~eies~e~el---------~~L~~ei~~L~ekl~se 351 (640)
...|..++..+..-..--..+++.+..|.++|.++..-++. +.....-...+. +.|...|.++..+|+..
T Consensus 182 ~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~ 261 (546)
T KOG0977|consen 182 REELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELALAIREIRAQYEAI 261 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988766666677788888888888888753332 222222222222 45666677777776666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcHH
Q 006565 352 FERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRES 431 (640)
Q Consensus 352 ~er~ee~~~rleeaEee~kea~e~~~~areead~aq~E~~elQr~~~qrlaeIerl~~qIE~lEre~e~Le~E~~~l~~s 431 (640)
-....+.-+.| .+..+.++......+......++.|+..+...+..+.+++..++..-..|++++++|..+.. .
T Consensus 262 ~~~nR~diE~~--Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~----e 335 (546)
T KOG0977|consen 262 SRQNRKDIESW--YKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLD----E 335 (546)
T ss_pred HHHhHHHHHHH--HHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhh----h
Confidence 54433322222 23355556655556666666666666666666666666666666666666666666644332 2
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHH
Q 006565 432 ELEALSK-VALLEARVEEREKEIESL 456 (640)
Q Consensus 432 El~al~k-v~~lE~~vee~e~eiE~L 456 (640)
+...+.. +...++.+...+.++..|
T Consensus 336 ~~r~~e~~L~~kd~~i~~mReec~~l 361 (546)
T KOG0977|consen 336 DQRSFEQALNDKDAEIAKMREECQQL 361 (546)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 3344444 555555555555555555
No 34
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.71 E-value=0.00039 Score=73.34 Aligned_cols=287 Identities=14% Similarity=0.216 Sum_probs=140.5
Q ss_pred HHHHhHHhhhcchHHhHHhhHHhHHhhhhh----hHHHHHHHHHHHhHhhHhhHHHhhhHHHHhhhhHHHHHHHHHHHHH
Q 006565 134 SRINNLQGENISLREKSSSLSKTVDSLKNE----ISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQ 209 (640)
Q Consensus 134 ~~~~~l~~k~~s~ee~~~~l~k~le~~~~e----~~ew~~kYe~~~~~~k~~~~~~AAGIsklK~Rkkeae~RL~at~en 209 (640)
.+.++..-+.+.||....-|..++...+.- .+.+...|+.-|.+-+..=+..+...+.+......+..-+..++..
T Consensus 11 dRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k 90 (312)
T PF00038_consen 11 DRLASYIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRK 90 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHH
Confidence 455566677777888777777777766554 6678999999999888887777777766665555555555544444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 006565 210 ALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMK-EKATKIEHAEQCLTTL 288 (640)
Q Consensus 210 L~RVkDel~Ewkrky~~L~~QAKkAeek~a~L~er~~~~~q~r~~a~ree~~s~le~kE~kie-~~k~ei~~aEq~la~~ 288 (640)
++........++..+..+......+.-....++.++. .++..++.++.....++..+...+. ....++.. ..
T Consensus 91 ~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~-~L~eEl~fl~~~heeEi~~L~~~~~~~~~~e~~~------~~ 163 (312)
T PF00038_consen 91 YEEELAERKDLEEELESLRKDLDEETLARVDLENQIQ-SLKEELEFLKQNHEEEIEELREQIQSSVTVEVDQ------FR 163 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTTSTT-------------------
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHH-HHHHHHHHHHhhhhhhhhhhhhccccccceeecc------cc
Confidence 4444444444444444444444433333333444543 4444444444444444444443332 00000000 00
Q ss_pred HHHHHHHHHHHh-hHHHHHhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 289 RLELKAAESKMR-SYEVEISSQKLETK-ELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAE 366 (640)
Q Consensus 289 q~eL~e~e~kIk-~~e~ei~~le~el~-~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaE 366 (640)
..+|..+-..|+ .|+.........+. ....++..+..........+..+..++..+...+.+....+..+......++
T Consensus 164 ~~dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le 243 (312)
T PF00038_consen 164 SSDLSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLE 243 (312)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhh
Confidence 111222222222 12222222222111 1122333333333333333444444444444444433444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHH
Q 006565 367 KEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSK 438 (640)
Q Consensus 367 ee~kea~e~~~~areead~aq~E~~elQr~~~qrlaeIerl~~qIE~lEre~e~Le~E~~~l~~sEl~al~k 438 (640)
..+......... +....+..+..+..+|..++..+....+++..|.+-+..|. .|+.+..+
T Consensus 244 ~~l~~le~~~~~----------~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld-~EIatYR~ 304 (312)
T PF00038_consen 244 RQLRELEQRLDE----------EREEYQAEIAELEEELAELREEMARQLREYQELLDVKLALD-AEIATYRK 304 (312)
T ss_dssp HHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred hhHHHHHHHHHH----------HHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHH
Confidence 443333333322 23333555667777777777777777777777777777777 77776665
No 35
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.71 E-value=0.0016 Score=74.98 Aligned_cols=159 Identities=15% Similarity=0.208 Sum_probs=84.4
Q ss_pred hHHHHHHHhhHHhHHHHHhhHHHHHHHHhHHhhhcchHHhHHhhH--HhHHhhhhhhHHHHHHHHHHHhHhhHhhHHHhh
Q 006565 110 YKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLS--KTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCS 187 (640)
Q Consensus 110 ~~~~~~k~~e~~i~d~kk~~~~~~~~~~~l~~k~~s~ee~~~~l~--k~le~~~~e~~ew~~kYe~~~~~~k~~~~~~AA 187 (640)
..-+|++++-.-|+++ ..++.+|. -..+.+.+.-+. ..-..++..-..|++.|++.++..=..=+....
T Consensus 19 ~~~~~rr~~~~~i~~L-------e~~k~~l~--~~pv~~el~kvk~l~l~Ges~~~f~~w~~~~~~i~~~~~~~ie~~l~ 89 (569)
T PRK04778 19 AGLILRKRNYKRIDEL-------EERKQELE--NLPVNDELEKVKKLNLTGQSEEKFEEWRQKWDEIVTNSLPDIEEQLF 89 (569)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHh--cCCHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 3467777777666665 33333332 234455444432 345677788889999999966644332222222
Q ss_pred hHH--HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhHHHH
Q 006565 188 EIE--VLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLA 265 (640)
Q Consensus 188 GIs--klK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a~L~er~~~~~q~r~~a~ree~~s~le 265 (640)
.+- .-+-|-..|-.-+..+.+.++.++..+..+..-++.|..+-++-......+..+.. .+.-.+.|-+-.|-.++.
T Consensus 90 ~ae~~~~~~~f~~a~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~-~~rk~ll~~~~~~G~a~~ 168 (569)
T PRK04778 90 EAEELNDKFRFRKAKHEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYR-ELRKSLLANRFSFGPALD 168 (569)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCccccchHH
Confidence 211 11223334445566666666666666666666666666655555555555555543 444444444444444444
Q ss_pred HHHHHHHHHHHHH
Q 006565 266 EKEEEMKEKATKI 278 (640)
Q Consensus 266 ~kE~kie~~k~ei 278 (640)
.++..+..+...|
T Consensus 169 ~le~~l~~~e~~f 181 (569)
T PRK04778 169 ELEKQLENLEEEF 181 (569)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 36
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.69 E-value=0.00065 Score=81.48 Aligned_cols=311 Identities=18% Similarity=0.232 Sum_probs=157.2
Q ss_pred HHhhHHhHHH-HH---hhHHHHHHHHhHHhh---hc----chHHhHHhhHHhHHhhhhhhHHHHHHHHHHHhHhhHhhHH
Q 006565 116 KRYDDAINDK-KK---LADDYTSRINNLQGE---NI----SLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQ 184 (640)
Q Consensus 116 k~~e~~i~d~-kk---~~~~~~~~~~~l~~k---~~----s~ee~~~~l~k~le~~~~e~~ew~~kYe~~~~~~k~~~~~ 184 (640)
.+|..||..+ ++ |.++++.-.+.+..= -. ..++-+..|.+..+.. -|+.+--+.+-..
T Consensus 263 ~ry~~~I~~~~~rv~~L~e~~sek~~~~k~~e~ek~~lE~~k~~al~fL~kenel~-----~~~~~~~q~~~~~------ 331 (1293)
T KOG0996|consen 263 NRYKEPIEELMRRVERLNEDRSEKENRVKLVEKEKKALEGPKNEALEFLKKENELF-----RKKNKLCQYILYE------ 331 (1293)
T ss_pred cccchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH------
Confidence 4688898888 33 333333333332221 11 2344556666655544 4554444332211
Q ss_pred HhhhHHHHhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhHH
Q 006565 185 VCSEIEVLKSRSTAAEARLAAAREQAL-SAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSST 263 (640)
Q Consensus 185 ~AAGIsklK~Rkkeae~RL~at~enL~-RVkDel~Ewkrky~~L~~QAKkAeek~a~L~er~~~~~q~r~~a~ree~~s~ 263 (640)
+-+.|+.+.......+.-|.+-.+..+ -..+.....+.. -+..+++.+.+.+... ....+ +.++..+
T Consensus 332 ~~~ki~~~~~~~~~~~e~lk~~~ek~~~e~~~~~~k~e~~-------~~~~~e~~~~~kn~~~-~~k~~----~~~~e~~ 399 (1293)
T KOG0996|consen 332 SRAKIAEMQEELEKIEEGLKDENEKFDIESNEEVEKNEAV-------KKEIKERAKELKNKFE-SLKKK----FQDLERE 399 (1293)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHH-------HHHHHHHHHHHHHHHH-HHHHH----HHHHHHH
Confidence 244555555555555555554444444 333333333333 3333444444443332 33333 3344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 264 LAEKEEEMKEKATKIEHAEQC-------LTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARI 336 (640)
Q Consensus 264 le~kE~kie~~k~ei~~aEq~-------la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~ 336 (640)
-...+..++...+.++.++.. ...+......+...|..+..++..+...+..++..++ ....++..+...
T Consensus 400 ~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~---e~~~~l~~~t~~ 476 (1293)
T KOG0996|consen 400 DVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELD---EILDSLKQETEG 476 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhhhhh
Confidence 333333444444444444444 4444444455555555566666555555544444333 334556667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 337 MEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLER 416 (640)
Q Consensus 337 L~~ei~~L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~areead~aq~E~~elQr~~~qrlaeIerl~~qIE~lEr 416 (640)
+..++..++..+.-....+.++..+++.++.+.+-.......+...++.++.-...++..+-+..+.+..+...|.++..
T Consensus 477 ~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~ 556 (1293)
T KOG0996|consen 477 IREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQ 556 (1293)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 77777777777776666666666666666666666666666665555555555555555555555555555555555555
Q ss_pred HHHHhHHHHhhhcHHHHHHHHH-HHHHHHHHHHHHHHH
Q 006565 417 QKTDLTNEVNRIRESELEALSK-VALLEARVEEREKEI 453 (640)
Q Consensus 417 e~e~Le~E~~~l~~sEl~al~k-v~~lE~~vee~e~ei 453 (640)
++.....++..++ .+...+.. +..+-.+|++...-+
T Consensus 557 e~~~~~k~l~~~~-~e~~~~~~~~~~~rqrveE~ks~~ 593 (1293)
T KOG0996|consen 557 ELKEKEKELPKLR-KEERNLKSQLNKLRQRVEEAKSSL 593 (1293)
T ss_pred HHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555 44444444 444444444444333
No 37
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.68 E-value=0.0003 Score=82.83 Aligned_cols=50 Identities=8% Similarity=0.063 Sum_probs=46.1
Q ss_pred hhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 186 CSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAAL 235 (640)
Q Consensus 186 AAGIsklK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAe 235 (640)
.||...|..|+.+++.-+..|..--.-+..++..+..++..|+.+-+-+.
T Consensus 162 VaGtrvYeerreeSlkim~ET~qK~ekI~ell~yieerLreLEeEKeeL~ 211 (1200)
T KOG0964|consen 162 VAGTRVYEERREESLKIMEETKQKREKINELLKYIEERLRELEEEKEELE 211 (1200)
T ss_pred hcccchhHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 79999999999999999999999999999999999999999998655544
No 38
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=98.63 E-value=6e-09 Score=123.90 Aligned_cols=381 Identities=19% Similarity=0.268 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHhhH----HhHHHHHHHhhHHhHHHHHhhHHHHHHHHhHHhhhcchHHhHHhhHHhHHhhhhhhHHH--
Q 006565 94 EDNMKLLKKQLEDSE----RYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDW-- 167 (640)
Q Consensus 94 ~~k~~~~~k~le~~~----k~~~~~~k~~e~~i~d~kk~~~~~~~~~~~l~~k~~s~ee~~~~l~k~le~~~~e~~ew-- 167 (640)
++-|..|.+.||..- .-.+.+++.+.++|.++.-.++....-++.|..--+.|+.....|..+|++..+.+.+-
T Consensus 101 E~El~~Lrr~LEe~~~~~e~~~~~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek 180 (859)
T PF01576_consen 101 EAELAKLRRDLEEANLQHEATLAELRKKHQDAVAELNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQEAEK 180 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 345566777776432 45667788888888888888888888888888888888888888888888776665554
Q ss_pred -HHHHHHHHhHhhHhhHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H
Q 006565 168 -KRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKA-------A 239 (640)
Q Consensus 168 -~~kYe~~~~~~k~~~~~~AAGIsklK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~-------a 239 (640)
.+.++.-|++.+.--+..-..++.|...+.-+...++.+..+|+-...-+.-+.+.-.+|..|..-+...+ .
T Consensus 181 ~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~ 260 (859)
T PF01576_consen 181 KRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQ 260 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhh
Confidence 34455555555554555555555554444444444444444444444444444443333333332222111 1
Q ss_pred HHHHhhhHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHHHHhhHHHHHHHHHH
Q 006565 240 IVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLEL-KAAESKMRSYEVEISSQKLETKELSE 318 (640)
Q Consensus 240 ~L~er~~~~~q~r~~a~ree~~s~le~kE~kie~~k~ei~~aEq~la~~q~eL-~e~e~kIk~~e~ei~~le~el~~L~e 318 (640)
.|..... .++...+.+++++....+.+. .+...+..+...+...+..+ .+....+..++.-.+.+..+|..+..
T Consensus 261 ~L~~~l~-~le~e~~~L~eqleeE~e~k~----~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e 335 (859)
T PF01576_consen 261 ALEKQLR-QLEHELEQLREQLEEEEEAKS----ELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQE 335 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhHHHHH-HHHHHHHHHHHHHhhhhhhHH----HHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 1333332 444443333333332211111 11222222333333333333 22333344555666677778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 006565 319 KLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAM 398 (640)
Q Consensus 319 kle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~areead~aq~E~~elQr~~~ 398 (640)
.++.+.....++++....|..++.-+...+.........+.++-..+...+......++....+.+.++.+...++..++
T Consensus 336 ~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~ 415 (859)
T PF01576_consen 336 QLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELF 415 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 88888888888888888888888888888888887777777777777778888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcHHHHHH-------HHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 006565 399 ERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEA-------LSK-VALLEARVEEREKEIESLLESNNEQRASTVKK 470 (640)
Q Consensus 399 qrlaeIerl~~qIE~lEre~e~Le~E~~~l~~sEl~a-------l~k-v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~ 470 (640)
.+...++.+..+++.++++...|..++..+. +.++. +.+ ...|+..++++...++++ ...++.....+.-
T Consensus 416 ~Lk~~lee~~e~~e~lere~k~L~~El~dl~-~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~-E~~l~~~E~~~lR 493 (859)
T PF01576_consen 416 KLKNELEELQEQLEELERENKQLQDELEDLT-SQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEA-EDALEAEEQKKLR 493 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHhhccch-hhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 8888888888888888888888888888876 55444 333 444444555555555555 4444444445555
Q ss_pred HHHHHHHHHHH
Q 006565 471 LEDLLESERRS 481 (640)
Q Consensus 471 le~~le~~re~ 481 (640)
++..|..++..
T Consensus 494 l~~el~~~r~e 504 (859)
T PF01576_consen 494 LQVELQQLRQE 504 (859)
T ss_dssp -----------
T ss_pred HHHHHHHHHHH
Confidence 55555544444
No 39
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.58 E-value=0.0017 Score=68.56 Aligned_cols=272 Identities=16% Similarity=0.182 Sum_probs=154.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhHHHHHHHH
Q 006565 194 SRSTAAEARLAAAREQALSAQEE----VEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEE 269 (640)
Q Consensus 194 ~Rkkeae~RL~at~enL~RVkDe----l~Ewkrky~~L~~QAKkAeek~a~L~er~~~~~q~r~~a~ree~~s~le~kE~ 269 (640)
.|...++..-......+.....- ...+...|..-..++.. .+..+..... .++.. +..+..+++....
T Consensus 18 ekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~---~id~~~~eka-~l~~e----~~~l~~e~~~~r~ 89 (312)
T PF00038_consen 18 EKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRR---QIDDLSKEKA-RLELE----IDNLKEELEDLRR 89 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHH---HHHHHHHHHH-HHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHH---hhhhHHHHhh-HHhhh----hhhHHHHHHHHHH
Confidence 34444444444444444433333 33344444444443333 3333333332 44555 6667777777778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHH
Q 006565 270 EMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFE----------REARIMEQ 339 (640)
Q Consensus 270 kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e----------~el~~L~~ 339 (640)
+|+........++..+..++..+.......-.+++.+..++.+|.++..-++.--..+...- .....|..
T Consensus 90 k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~~~~~~~e~~~~~~~dL~~ 169 (312)
T PF00038_consen 90 KYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQIQSSVTVEVDQFRSSDLSA 169 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT----------------HHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccceeecccccccchh
Confidence 88888888888888888888888888888888888888888888888776654222221111 11122333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 340 DKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKT 419 (640)
Q Consensus 340 ei~~L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~areead~aq~E~~elQr~~~qrlaeIerl~~qIE~lEre~e 419 (640)
-+..+...|+..-.++-...+.| ....+..+..........+..++.|...+...+..+..+|..++.....|+.++.
T Consensus 170 ~L~eiR~~ye~~~~~~~~e~e~~--y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~ 247 (312)
T PF00038_consen 170 ALREIRAQYEEIAQKNREELEEW--YQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLR 247 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHhhhhhhhhhh--cccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHH
Confidence 34444444444443333222221 3334566666666677777777777777777777777777777777777777766
Q ss_pred HhHHHHhhhcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 006565 420 DLTNEVNRIRESELEALSK-VALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERR 480 (640)
Q Consensus 420 ~Le~E~~~l~~sEl~al~k-v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re 480 (640)
.++.... .+...+.. +..++..+.....++... ....+.+-..--.|+.+|..+|.
T Consensus 248 ~le~~~~----~~~~~~~~~i~~le~el~~l~~~~~~~-~~ey~~Ll~~K~~Ld~EIatYR~ 304 (312)
T PF00038_consen 248 ELEQRLD----EEREEYQAEIAELEEELAELREEMARQ-LREYQELLDVKLALDAEIATYRK 304 (312)
T ss_dssp HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----HHHHHHHHhhhccchhHHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHHHHH
Confidence 6654433 33444555 666666666666666655 44444455554555555555554
No 40
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.57 E-value=0.0034 Score=71.36 Aligned_cols=47 Identities=21% Similarity=0.215 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhh
Q 006565 467 TVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQELTKA 513 (640)
Q Consensus 467 ~l~~le~~le~~re~l~e~nrrleal~~e~~~lqs~id~Leg~~~~~ 513 (640)
+|-....+|.+++..+..+.+.-+.++.+.+.+...|.-|+.-+..+
T Consensus 411 qlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~~ 457 (546)
T PF07888_consen 411 QLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDKV 457 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555566666777777777777777787788888887777666444
No 41
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.56 E-value=0.0036 Score=71.15 Aligned_cols=76 Identities=13% Similarity=0.071 Sum_probs=47.0
Q ss_pred HHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 298 KMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKAT 373 (640)
Q Consensus 298 kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~kea~ 373 (640)
....+..+...+..+|+.+.+.+.+...+..-+.+++..+..-.+++-..+....=..+.+..++..+.-.+++..
T Consensus 277 ~~~~~~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad~~l~lke~~ 352 (546)
T PF07888_consen 277 QAQQLQQENEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLADASLELKEGR 352 (546)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3345555666667777777777777777777777777766666666666665555445555555555555554444
No 42
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=98.56 E-value=0.0046 Score=74.05 Aligned_cols=41 Identities=20% Similarity=0.271 Sum_probs=27.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 194 SRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAAL 235 (640)
Q Consensus 194 ~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAe 235 (640)
.|...+-..|.++..+- ||.+++...+...+.+..+.+.-.
T Consensus 1317 ~r~~~s~~~l~s~~~~s-R~e~l~~k~k~~f~~~~~n~~~L~ 1357 (1758)
T KOG0994|consen 1317 RRVDASSRELASLVDQS-RVEELLVKQKGDFGGLAENSRLLV 1357 (1758)
T ss_pred Hhhhhhhhcccchhhhh-HHHHHHHHhhhcccccccccHHHH
Confidence 45555555566666666 888888888888777655555443
No 43
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=98.52 E-value=1.7e-08 Score=120.11 Aligned_cols=297 Identities=18% Similarity=0.274 Sum_probs=0.0
Q ss_pred hhchHHHHHHHHHhHHHhHHHHHHhhhcCchhHHHHHHHHHHhhHHhHHHHHH---HhhHHhHHHHHhhHHHHHHHHhHH
Q 006565 64 SEGPILDLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLK---RYDDAINDKKKLADDYTSRINNLQ 140 (640)
Q Consensus 64 l~~~~~d~~~~~~~~i~~~~~~l~~~c~s~~~k~~~~~k~le~~~k~~~~~~k---~~e~~i~d~kk~~~~~~~~~~~l~ 140 (640)
+...|.++..+ ++......+-|.....-....++.|..+|+..+.-..-+.+ .++..+.|+++..++-...+..|.
T Consensus 185 lE~qL~El~~k-lee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~ 263 (859)
T PF01576_consen 185 LEAQLNELQAK-LEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQALE 263 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhH
Confidence 44444444333 35566666677777777788888888888888854444444 789999999888888888999999
Q ss_pred hhhcchHHhHHhhHHhHHhhh--------------hhhHHHHHHHHHHHhHhhHhhHHHhhhHHHHhhhhHHHHHHHHHH
Q 006565 141 GENISLREKSSSLSKTVDSLK--------------NEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAA 206 (640)
Q Consensus 141 ~k~~s~ee~~~~l~k~le~~~--------------~e~~ew~~kYe~~~~~~k~~~~~~AAGIsklK~Rkkeae~RL~at 206 (640)
.+.+.++..+..|..+||.-. .+..+|++||+.-+ ..++..+..-++.+..+|..+
T Consensus 264 ~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~----------~~~~EelEeaKKkL~~~L~el 333 (859)
T PF01576_consen 264 KQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEA----------EQRTEELEEAKKKLERKLQEL 333 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHh----------hhhHHHHHHHHHHHHHHHHHH
Confidence 999999999998888887543 45556666666543 344556666777788888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 207 REQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLT 286 (640)
Q Consensus 207 ~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a~L~er~~~~~q~r~~a~ree~~s~le~kE~kie~~k~ei~~aEq~la 286 (640)
.+.++-+..-+..|++.-.-|..+..-+.-.+........ .+.-+ ...|...++.....+..+......+.....
T Consensus 334 ~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~-~LeKK----qr~fDk~l~e~k~~~~~~~~e~d~~q~e~r 408 (859)
T PF01576_consen 334 QEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAA-ELEKK----QRKFDKQLAEWKAKVEELQAERDAAQREAR 408 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH----HHhHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 8888888888877777776666655555544444444442 44444 555555554444455555555555555555
Q ss_pred HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 287 TLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAE 366 (640)
Q Consensus 287 ~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaE 366 (640)
.+..++..+...+......+..++.+-+.|...+..+.+.+....+.+..|...+..|+.........+++....+...+
T Consensus 409 ~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~E 488 (859)
T PF01576_consen 409 ELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEAEE 488 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55444433333333333333333333333333333333333333333333333333333333333334444444444444
Q ss_pred HHHHHHHHHH
Q 006565 367 KEAKKATELA 376 (640)
Q Consensus 367 ee~kea~e~~ 376 (640)
..+.++.-.+
T Consensus 489 ~~~lRl~~el 498 (859)
T PF01576_consen 489 QKKLRLQVEL 498 (859)
T ss_dssp ----------
T ss_pred HHHHHHHHHH
Confidence 4433333333
No 44
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=98.48 E-value=4.2e-05 Score=80.84 Aligned_cols=206 Identities=14% Similarity=0.216 Sum_probs=144.3
Q ss_pred hhhhhHHHH--------HHHHHHHHhcCCCCcchhhHH----HHHHHHHHhhhhcccCCchHHHHHHHHHHhhhchHHHH
Q 006565 4 DIRCSSAIQ--------SMERKLRAACHSSDASIDNVV----KVLDGLISEYETSCHGPGKWQKLATFLQQSSEGPILDL 71 (640)
Q Consensus 4 ~~~c~~~~~--------~me~~l~~ac~~~~a~~~~~~----~~l~~~l~~y~~s~~G~g~~~k~~~~L~~~l~~~~~d~ 71 (640)
...|..|++ .|+..+ .-|-.+++.+. .....++..|...++|- .-++|..-|...+.+.|.+|
T Consensus 38 e~e~~~A~~~A~~~Y~~~m~~~~----~~P~~~~~eL~~~H~~~~~~A~~~F~~~s~~d-~~~~~~~~L~~~i~~~~~~~ 112 (297)
T PF02841_consen 38 EAENRAAVEKAVEHYEEQMEQRV----KLPTETLEELLELHEQCEKEALEVFMKRSFGD-EDQKYQKKLMEQIEKKFEEF 112 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH------SS-SSHHHHHHHHHHHHHHHHHHHHHH-----GGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh----CCCccCHHHHHHHHHHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHH
Confidence 455766664 466665 45555455544 45778999999988886 55699999999999999998
Q ss_pred HHHHH--------hHHHh----HHHHHHhhhcCchhHHHHHHHHHHhhHHhHHHHHHH-hhHHhHHHHHhhHHHHHHHHh
Q 006565 72 VKRLI--------DQIGS----ERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKR-YDDAINDKKKLADDYTSRINN 138 (640)
Q Consensus 72 ~~~~~--------~~i~~----~~~~l~~~c~s~~~k~~~~~k~le~~~k~~~~~~k~-~e~~i~d~kk~~~~~~~~~~~ 138 (640)
+++-. +-|+. ++.++...|.+++..+..+.+.++.... .|.+. --||..+- +...|
T Consensus 113 ~~~N~~~s~~~C~~~l~~l~~~le~~l~~~~~~~~gg~~~~~~~~~~~~~---~Y~~~p~Kg~ka~e--vL~~f------ 181 (297)
T PF02841_consen 113 CKQNEEASEKKCQALLQELFQPLEEKLKQGCYSKPGGYQLFLKELDELEK---EYEQEPGKGVKAEE--VLQEF------ 181 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSSTTHHHHHHHHHHHHHH---HHHHSS---TTHHH--HHHHH------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH---HHhhcCCCCccHHH--HHHHH------
Confidence 87655 33444 9999999999999999998888877662 33333 11111110 11111
Q ss_pred HHhhhcchHHhHHhhHHhHHhhhhhhHHHHHHHHHHHhHhhHhhHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 006565 139 LQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVE 218 (640)
Q Consensus 139 l~~k~~s~ee~~~~l~k~le~~~~e~~ew~~kYe~~~~~~k~~~~~~AAGIsklK~Rkkeae~RL~at~enL~RVkDel~ 218 (640)
|. .+.++++.+....+.|...+++...|+.+++.+-.+.+...+........+..+....+..+....+.+...+.
T Consensus 182 l~-~~~~~~~~ilq~d~~L~~~ek~~~~~~~k~e~~e~e~~~l~e~~~~~~~~le~~~~~~ee~~~~L~ekme~e~~--- 257 (297)
T PF02841_consen 182 LQ-SKESMENSILQADQQLTEKEKEIEEEQAKAEAAEKEKEKLEEKQKEQEQMLEQQERSYEEHIKQLKEKMEEERE--- 257 (297)
T ss_dssp HH-HCHHHHHHHHHH-TTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 01 05678888899999999999999999999999999999999999999999999999999998888877666555
Q ss_pred HHHHHHHHHHH
Q 006565 219 EWKRKYGVAVR 229 (640)
Q Consensus 219 Ewkrky~~L~~ 229 (640)
.|...++.+..
T Consensus 258 ~~~~e~e~~l~ 268 (297)
T PF02841_consen 258 QLLQEQERLLE 268 (297)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555444
No 45
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=98.43 E-value=0.0081 Score=69.13 Aligned_cols=162 Identities=20% Similarity=0.304 Sum_probs=96.4
Q ss_pred HhHHHHHHHhhHHhHHHHHhhHHHHHHHHhHHhhhcchHHhHHhhHH--hHHhhhhhhHHHHHHHHHHHhHh-hHhhHHH
Q 006565 109 RYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSK--TVDSLKNEISDWKRKYDQVLTKQ-KAMEDQV 185 (640)
Q Consensus 109 k~~~~~~k~~e~~i~d~kk~~~~~~~~~~~l~~k~~s~ee~~~~l~k--~le~~~~e~~ew~~kYe~~~~~~-k~~~~~~ 185 (640)
-..-+|+++|---|+++ ..++..| .-..+.+++..+.+ .-..++.--..|+.+|++.++.+ ..+++.+
T Consensus 14 ~~~~~~rk~~~k~i~~L-------e~~k~~l--~~~pv~~el~kvk~l~l~Gqt~~~fe~w~~~w~~i~~~~~~~ie~~L 84 (560)
T PF06160_consen 14 IIGYIYRKRYYKEIDEL-------EERKNEL--MNLPVADELSKVKKLNLTGQTEEKFEEWRQKWDEIVTKQLPEIEEQL 84 (560)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHH--HcCCHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 33446777776666655 3344432 33466666655543 44667777889999999999553 3333332
Q ss_pred -hhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhHHH
Q 006565 186 -CSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTL 264 (640)
Q Consensus 186 -AAGIsklK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a~L~er~~~~~q~r~~a~ree~~s~l 264 (640)
-|.=...+-|-..|-..+..+.+.|+.+.+.+..+..-++.|...-.+-......+.++.. .+.-.+.+-+-.+-.++
T Consensus 85 ~~ae~~~~~~rf~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~-~lrk~ll~~~~~~G~a~ 163 (560)
T PF06160_consen 85 FEAEEYADKYRFKKAKQAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYR-ELRKELLAHSFSYGPAI 163 (560)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhchhH
Confidence 1111223334455666677777777777777777777777777766666666666666664 55555555555555555
Q ss_pred HHHHHHHHHHHHHHHH
Q 006565 265 AEKEEEMKEKATKIEH 280 (640)
Q Consensus 265 e~kE~kie~~k~ei~~ 280 (640)
..++..+..+...|..
T Consensus 164 ~~Le~~L~~ie~~F~~ 179 (560)
T PF06160_consen 164 EELEKQLENIEEEFSE 179 (560)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555555554443
No 46
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=98.42 E-value=0.0038 Score=74.75 Aligned_cols=298 Identities=16% Similarity=0.171 Sum_probs=147.5
Q ss_pred HhHHHHHHHhhHHhHHH---HHhhHHHHHHHHhHHhhhcchHHhHHhhHHhHHhhhhhhHHHHHHHHHHHhHhhHhhHHH
Q 006565 109 RYKSEYLKRYDDAINDK---KKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQV 185 (640)
Q Consensus 109 k~~~~~~k~~e~~i~d~---kk~~~~~~~~~~~l~~k~~s~ee~~~~l~k~le~~~~e~~ew~~kYe~~~~~~k~~~~~~ 185 (640)
..+......+.+..... .+..-++..+-+.-+.+-.-..++-.-...|++++-++.-.-..---..+++..+.-+.+
T Consensus 1415 ~~A~~~~~~l~~~~ae~eq~~~~v~ea~~~aseA~~~Aq~~~~~a~as~~q~~~s~~el~~Li~~v~~Flt~~~adp~si 1494 (1758)
T KOG0994|consen 1415 LMAGDADTQLRSKLAEAEQTLSMVREAKLSASEAQQSAQRALEQANASRSQMEESNRELRNLIQQVRDFLTQPDADPDSI 1494 (1758)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 44444444444443333 222233333333344444445555556666666666666655555555555554443322
Q ss_pred ---------------hhhHHHHhhhhHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 186 ---------------CSEIEVLKSRSTAAEARL-------AAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQE 243 (640)
Q Consensus 186 ---------------AAGIsklK~Rkkeae~RL-------~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a~L~e 243 (640)
...|..+-....+..++| ..|..|+.|| ..|...|++|...+..++.
T Consensus 1495 ~~vA~~vL~l~lp~tpeqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra-----------~~L~s~A~~a~~~A~~v~~ 1563 (1758)
T KOG0994|consen 1495 EEVAEEVLALELPLTPEQIQQLTGEIQERVASLPNVDAILSRTKGDIARA-----------ENLQSEAERARSRAEDVKG 1563 (1758)
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHH-----------HHHHHHHHHHHhHHHHHHH
Confidence 122333333333333333 3333333333 2344556666666666665
Q ss_pred hhhHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHH
Q 006565 244 RTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAV 323 (640)
Q Consensus 244 r~~~~~q~r~~a~ree~~s~le~kE~kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~ 323 (640)
..+ .+.+- .++...+.-.-+.-|+.+...+..+.+-+...+.+...+|.........+..+...+..|..+.-..
T Consensus 1564 ~ae-~V~ea----L~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qn 1638 (1758)
T KOG0994|consen 1564 QAE-DVVEA----LEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQN 1638 (1758)
T ss_pred HHH-HHHHH----HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 554 44444 3333344344444566666666666666666666666666555555555555555555555554444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 006565 324 NAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAV 403 (640)
Q Consensus 324 ~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~areead~aq~E~~elQr~~~qrlae 403 (640)
...+...++.+-.++.+-... ++.++.+...++-+..-...--+....++..++..+.+...+--..+..+..
T Consensus 1639 s~~A~~a~~~a~sa~~~A~~a-------~q~~~~lq~~~~~~~~l~~~r~~g~~~ar~rAe~L~~eA~~Ll~~a~~kl~~ 1711 (1758)
T KOG0994|consen 1639 SAEAKQAEKTAGSAKEQALSA-------EQGLEILQKYYELVDRLLEKRMEGSQAARERAEQLRTEAEKLLGQANEKLDR 1711 (1758)
T ss_pred cHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444443 3333333333333333333333444445555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhc
Q 006565 404 IERVQRQIESLERQKTDLTNEVNRIR 429 (640)
Q Consensus 404 Ierl~~qIE~lEre~e~Le~E~~~l~ 429 (640)
|..|+...++.++.+++...++..|+
T Consensus 1712 l~dLe~~y~~~~~~L~~~~aeL~~Le 1737 (1758)
T KOG0994|consen 1712 LKDLELEYLRNEQALEDKAAELAGLE 1737 (1758)
T ss_pred HHHHHHHHhhhhHHHHHHHHHhhhHH
Confidence 55555555666666666655555555
No 47
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.35 E-value=0.011 Score=70.39 Aligned_cols=247 Identities=17% Similarity=0.206 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHhhhHHHhhhHHHHHHHHhHHHHHHH
Q 006565 199 AEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALE----------KAAIVQERTSKEMQQREDVLREEFSSTLAEKE 268 (640)
Q Consensus 199 ae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAee----------k~a~L~er~~~~~q~r~~a~ree~~s~le~kE 268 (640)
.+..|.++...+.-++.++..+++++..+++++.+-.+ +++-++.+.+...- -.+..++....
T Consensus 675 ~l~~l~~~~~~~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~-------~~~~~~~~~~~ 747 (1174)
T KOG0933|consen 675 QLQKLKQAQKELRAIQKELEALERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQNEF-------HKLLDDLKELL 747 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChH-------hhHHHHHHHHH
Confidence 45677888888999999999999999999988776552 12222222220111 11222233333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 269 EEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKY 348 (640)
Q Consensus 269 ~kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl 348 (640)
..+++..++|.+....+-.........+..++.+.+.. +.+++.|+..++.+..+++....+...-.++...|.-..
T Consensus 748 e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~r---e~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~ 824 (1174)
T KOG0933|consen 748 EEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANR---ERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEH 824 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444332221 223333333444444444333333333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhh
Q 006565 349 KSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRI 428 (640)
Q Consensus 349 ~se~er~ee~~~rleeaEee~kea~e~~~~areead~aq~E~~elQr~~~qrlaeIerl~~qIE~lEre~e~Le~E~~~l 428 (640)
+...+........|...+..+.....+...+...++.+..+...+|..+...-+.+-....+|..+-...+.+..++...
T Consensus 825 e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~ 904 (1174)
T KOG0933|consen 825 EELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDG 904 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcc
Confidence 33333334444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred cHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 006565 429 RESELEALSK-VALLEARVEEREKEIESL 456 (640)
Q Consensus 429 ~~sEl~al~k-v~~lE~~vee~e~eiE~L 456 (640)
. .+...+.. +..++..-..-..+++.|
T Consensus 905 ~-l~~kkle~e~~~~~~e~~~~~k~v~~l 932 (1174)
T KOG0933|consen 905 E-LERKKLEHEVTKLESEKANARKEVEKL 932 (1174)
T ss_pred c-chHHHHHhHHHHhhhhHHHHHHHHHHH
Confidence 4 44444444 444444444444444444
No 48
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.32 E-value=0.019 Score=68.48 Aligned_cols=35 Identities=23% Similarity=0.440 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHhhh
Q 006565 10 AIQSMERKLRAACHSSDASIDNVVKVLDGLISEYE 44 (640)
Q Consensus 10 ~~~~me~~l~~ac~~~~a~~~~~~~~l~~~l~~y~ 44 (640)
-|.++|+++...|.+-|+.+.-.++.|+..++.-.
T Consensus 273 ei~~le~~ikei~~~rd~em~~~~~~L~~~~~~~~ 307 (1174)
T KOG0933|consen 273 EIESLEKEIKEIEQQRDAEMGGEVKALEDKLDSLQ 307 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHH
Confidence 47778888888888888888877777777666543
No 49
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.30 E-value=0.011 Score=67.44 Aligned_cols=296 Identities=17% Similarity=0.189 Sum_probs=149.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HhhhHHHhhhHHHHHHHHhHHHHH
Q 006565 209 QALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQ----------------------ERTSKEMQQREDVLREEFSSTLAE 266 (640)
Q Consensus 209 nL~RVkDel~Ewkrky~~L~~QAKkAeek~a~L~----------------------er~~~~~q~r~~a~ree~~s~le~ 266 (640)
.|.-..|-++-.--+...|+.|-.+-..++..+. .-+. .+... +..+...+..
T Consensus 43 El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~-e~~~~----ra~~e~ei~k 117 (546)
T KOG0977|consen 43 ELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLD-ETARE----RAKLEIEITK 117 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHH-HHHHH----HHHHHHHHHH
Confidence 4444555555566666667776666663333322 2221 22223 5555555666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 267 KEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQ 346 (640)
Q Consensus 267 kE~kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~e 346 (640)
+..++++++..+..+++.....+..+......+..+++++..+.-.++.+.+.+..+..+...+..++..+...++-=.-
T Consensus 118 l~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etl 197 (546)
T KOG0977|consen 118 LREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETL 197 (546)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666655555555544432221111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-----HHHHhhHHHHHHH-HHHHHHHHHHHHHHH--------
Q 006565 347 KYKSEFERFEEVQERCKVAEKEA-KKATELADRERAEA-----AAARKGKSEFENL-AMERMAVIERVQRQI-------- 411 (640)
Q Consensus 347 kl~se~er~ee~~~rleeaEee~-kea~e~~~~areea-----d~aq~E~~elQr~-~~qrlaeIerl~~qI-------- 411 (640)
-.-...-+..++.++|.-....- .++.+....++.+. +.++.+...+-+. ..+..+.+.+.+..|
T Consensus 198 lr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI 277 (546)
T KOG0977|consen 198 LRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELALAIREIRAQYEAISRQNRKDIESWYKRKI 277 (546)
T ss_pred HHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 11111112222222222211000 11122222222222 1122222222222 133333333332222
Q ss_pred HHHH-------HHHHHhHHHHhhhcHHHHHHHHH-HHHHHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHH
Q 006565 412 ESLE-------RQKTDLTNEVNRIRESELEALSK-VALLEARVEEREKEIESL---LESNNEQRASTVKKLEDLLESERR 480 (640)
Q Consensus 412 E~lE-------re~e~Le~E~~~l~~sEl~al~k-v~~lE~~vee~e~eiE~L---~~~~~eq~~~~l~~le~~le~~re 480 (640)
.++. -..+....++.+++ +.+..+.. +..++.+-.-..+.|+.| |..+.......+...+..+...|+
T Consensus 278 ~~i~~~~~~~~~~~~~~rEEl~~~R-~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mRe 356 (546)
T KOG0977|consen 278 QEIRTSAERANVEQNYAREELRRIR-SRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMRE 356 (546)
T ss_pred HHHHhhhccccchhHHHHHHHHHHH-hcccchhhhhccccccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHH
Confidence 2222 22223336666777 77777777 777776666666666555 122334456667777777777777
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Q 006565 481 SRAAANAMAERLSLEVQSAQAKLDEMQQEL 510 (640)
Q Consensus 481 ~l~e~nrrleal~~e~~~lqs~id~Leg~~ 510 (640)
++..+--.+..|---...|...|.-+..-+
T Consensus 357 ec~~l~~Elq~LlD~ki~Ld~EI~~YRkLL 386 (546)
T KOG0977|consen 357 ECQQLSVELQKLLDTKISLDAEIAAYRKLL 386 (546)
T ss_pred HHHHHHHHHHHhhchHhHHHhHHHHHHHHh
Confidence 777777777666666666666666544433
No 50
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.27 E-value=0.0067 Score=68.87 Aligned_cols=72 Identities=11% Similarity=0.164 Sum_probs=36.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 006565 259 EFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSF 330 (640)
Q Consensus 259 e~~s~le~kE~kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~ 330 (640)
+....++.++.+++.+..+....+.++..++.++..+...+..+...+..++..+..+...+......+..+
T Consensus 210 ~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~~ 281 (562)
T PHA02562 210 KNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMY 281 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333445555555555555555555555555555555555555555444444444444444444444444333
No 51
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=98.25 E-value=0.022 Score=66.41 Aligned_cols=94 Identities=14% Similarity=0.197 Sum_probs=62.7
Q ss_pred hhHHHHHHHHHHhhHHhHHHHHHHhhHHhHHHHHhhHHHHHHHHhHHhhhcchHHhHHhhHHhHHhhhhhhHHHHHHHHH
Q 006565 94 EDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQ 173 (640)
Q Consensus 94 ~~k~~~~~k~le~~~k~~~~~~k~~e~~i~d~kk~~~~~~~~~~~l~~k~~s~ee~~~~l~k~le~~~~e~~ew~~kYe~ 173 (640)
|....+.--+++.+-+-....-.+|-.-++-+---.-+..++|+.||.+|..+|-....|.-..-+++-..-+-.-..|.
T Consensus 66 dkaglneSviie~sk~vstqetriyRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~ 145 (1265)
T KOG0976|consen 66 DKAGLNESVIIEQSKKVSTQETRIYRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIEN 145 (1265)
T ss_pred HHhhccchhhhhhcchhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444556666677888888999999888666667889999999999998877766665555555554444444454
Q ss_pred HHhHhhHhhHHHhh
Q 006565 174 VLTKQKAMEDQVCS 187 (640)
Q Consensus 174 ~~~~~k~~~~~~AA 187 (640)
+-+..-.+.+.+.|
T Consensus 146 ~~srlh~le~eLsA 159 (1265)
T KOG0976|consen 146 LNSRLHKLEDELSA 159 (1265)
T ss_pred hHHHHHHHHHHHhh
Confidence 44444444444444
No 52
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=98.21 E-value=0.033 Score=66.58 Aligned_cols=343 Identities=20% Similarity=0.246 Sum_probs=166.9
Q ss_pred HHhhHHHHHHHHhHHhhhcch----HHhHHhh---HHhHHhhhhhhHHHHHHHHHHHhHhhHhhHHHhhhHHHHhhhhHH
Q 006565 126 KKLADDYTSRINNLQGENISL----REKSSSL---SKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTA 198 (640)
Q Consensus 126 kk~~~~~~~~~~~l~~k~~s~----ee~~~~l---~k~le~~~~e~~ew~~kYe~~~~~~k~~~~~~AAGIsklK~Rkke 198 (640)
-+-..+.+-+++++..|++.| ||+.+.| ...||-.+.++.--+---++.+.+++ -.+.|+-.+..+..+..-
T Consensus 169 ~~~~~hL~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea~-ra~~yrdeldalre~aer 247 (1195)
T KOG4643|consen 169 VKKNLHLEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAH-RADRYRDELDALREQAER 247 (1195)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHhhhc
Confidence 344556667777888777765 4554443 33455555444444333333344333 233445555555555544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHhhhHHHhhhHHHHHHHHhHH---HHH
Q 006565 199 AEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKA---------AIVQERTSKEMQQREDVLREEFSST---LAE 266 (640)
Q Consensus 199 ae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~---------a~L~er~~~~~q~r~~a~ree~~s~---le~ 266 (640)
.-.+....-.++++++|-+.|.+..-..|...-.--++++ ..+.+.+. +.+.+++-|+.+.... +++
T Consensus 248 ~d~~ykerlmDs~fykdRveelkedN~vLleekeMLeeQLq~lrarse~~tleseii-qlkqkl~dm~~erdtdr~ktee 326 (1195)
T KOG4643|consen 248 PDTTYKERLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEII-QLKQKLDDMRSERDTDRHKTEE 326 (1195)
T ss_pred CCCccchhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHH-HHHHHHHHHHHhhhhHHHHHHH
Confidence 4455555567788888888888887555544443333333 33555554 6666644444443332 333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH-----HhhHHHHHhhHHHHH------HHHHH----HHHHHHHHHHH
Q 006565 267 KEEEMKEKATKIEHAEQCLTTLRL--ELKAAESK-----MRSYEVEISSQKLET------KELSE----KLEAVNAKAQS 329 (640)
Q Consensus 267 kE~kie~~k~ei~~aEq~la~~q~--eL~e~e~k-----Ik~~e~ei~~le~el------~~L~e----kle~~~~eies 329 (640)
+..+...+...-.+.--...-.+- +..+.+++ -..+.+ -..++..| ..|.+ .++..-++.-.
T Consensus 327 L~eEnstLq~q~eqL~~~~ellq~~se~~E~en~Sl~~e~eqLts-~ralkllLEnrrlt~tleelqsss~Ee~~SK~le 405 (1195)
T KOG4643|consen 327 LHEENSTLQVQKEQLDGQMELLQIFSENEELENESLQVENEQLTS-DRALKLLLENRRLTGTLEELQSSSYEELISKHLE 405 (1195)
T ss_pred HHHHHHHHHHHHHHhhhhhhHhhhhhcchhhhhhhHHHHHHHhhh-HHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 333333332222211111111100 00000100 000000 00000000 00110 22223333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH---HHHHHHHHHH
Q 006565 330 FEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENL---AMERMAVIER 406 (640)
Q Consensus 330 ~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~areead~aq~E~~elQr~---~~qrlaeIer 406 (640)
++++-.-|......|++++....+...+.....+.+..+.+.+..+.+..+..++.-..+-....+. .-|+.++.+.
T Consensus 406 leke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~e 485 (1195)
T KOG4643|consen 406 LEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAETEE 485 (1195)
T ss_pred HHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333444444444444444444444444444444443332222222222 2667777777
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhcHHH-------HHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 006565 407 VQRQIESLERQKTDLTNEVNRIRESE-------LEALSK-VALLEARVEEREKEIESLLESNNEQRASTVKKLED 473 (640)
Q Consensus 407 l~~qIE~lEre~e~Le~E~~~l~~sE-------l~al~k-v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~ 473 (640)
+..+|..+...+++-..++.++. +. +..... +..+-.++++++..+..+ ..++..+..+|+.|..
T Consensus 486 l~~~iknlnk~L~~r~~elsrl~-a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~l-E~ENa~LlkqI~~Lk~ 558 (1195)
T KOG4643|consen 486 LLNQIKNLNKSLNNRDLELSRLH-ALKNELKEQYKTCDIQYELLSNKLEELEELLGNL-EEENAHLLKQIQSLKT 558 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHH
Confidence 77888887777777777777766 54 333333 677788888888888877 8888888887777665
No 53
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.19 E-value=0.035 Score=66.15 Aligned_cols=221 Identities=21% Similarity=0.279 Sum_probs=131.6
Q ss_pred HHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 293 KAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKA 372 (640)
Q Consensus 293 ~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~kea 372 (640)
+.+.++...+...+...+.+|.....+...+...++..+........+...|...+....+.+--++..+.-....+..+
T Consensus 674 ~~~~~~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i 753 (1200)
T KOG0964|consen 674 NESRSELKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEEI 753 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHH
Confidence 55556666666666666666666666666666666666666666666666666666666666666666665555555555
Q ss_pred HHHHHHHHHHHHHHHhhHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHH--HHHHHHHHHH
Q 006565 373 TELADRERAEAAAARKGKSE-F-ENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSK--VALLEARVEE 448 (640)
Q Consensus 373 ~e~~~~areead~aq~E~~e-l-Qr~~~qrlaeIerl~~qIE~lEre~e~Le~E~~~l~~sEl~al~k--v~~lE~~vee 448 (640)
.-....+..-+.....+... + -.+-.+-...+..+...|..+...+..+..+...+. .-+.+++. .+.|..++.+
T Consensus 754 ~~~l~~~~~~~~~~e~el~sel~sqLt~ee~e~l~kLn~eI~~l~~kl~~~~~er~~~~-~rk~~le~~l~~kL~~r~~~ 832 (1200)
T KOG0964|consen 754 KTSLHKLESQSNYFESELGSELFSQLTPEELERLSKLNKEINKLSVKLRALREERIDIE-TRKTALEANLNTKLYKRVNE 832 (1200)
T ss_pred HHHHHHHHHHHHhHHHHHhHHHHhhcCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhH
Confidence 55555554444333333332 1 111122233355555666666666666666655555 55666666 5666677777
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhccc
Q 006565 449 REKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQELTKARLNE 517 (640)
Q Consensus 449 ~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~l~e~nrrleal~~e~~~lqs~id~Leg~~~~~~~~e 517 (640)
+..++.++ ....+...+.....++.++...+..+...+..+...++...+.+.++...+++.+.-|
T Consensus 833 l~~ei~~~---~d~~~~~el~~~~~el~~~~~~~e~~~~el~~l~~~i~~~~a~~~~~~~~lE~~~~le 898 (1200)
T KOG0964|consen 833 LEQEIGDL---NDSSRRSELELEKSELESEEKRVEAAILELKTLQDSIDKKKAEIKEIKKELEKAKNLE 898 (1200)
T ss_pred HHHHhhhc---ccccchhhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777755 3344566666677777777766666666666677777777777777666666555443
No 54
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.19 E-value=0.057 Score=68.52 Aligned_cols=47 Identities=11% Similarity=0.115 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhcCCCCcchhhHHHHHHHHHHhhhhcccCCchHHHHH
Q 006565 11 IQSMERKLRAACHSSDASIDNVVKVLDGLISEYETSCHGPGKWQKLA 57 (640)
Q Consensus 11 ~~~me~~l~~ac~~~~a~~~~~~~~l~~~l~~y~~s~~G~g~~~k~~ 57 (640)
+.++.+=||..-...+-.|+.+|..|...|.+|.-+-...-.-|++.
T Consensus 210 ~~~i~~fl~~yll~e~~~v~~~i~~m~~~l~~~r~t~~~~~~tq~dr 256 (1486)
T PRK04863 210 SSAITRSLRDYLLPENSGVRKAFQDMEAALRENRMTLEAIRVTQSDR 256 (1486)
T ss_pred HHhHHHHHHHHcCCCChhhhHHHHHHHHHHHHHHHHHHHHHhCccHH
Confidence 44556666666666665577888888888888876654444444333
No 55
>PRK11637 AmiB activator; Provisional
Probab=98.10 E-value=0.0041 Score=68.99 Aligned_cols=81 Identities=15% Similarity=0.221 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 268 EEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQK 347 (640)
Q Consensus 268 E~kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ek 347 (640)
..+++.+..++....+.+..++..+...+.+|..++.++..+..+|..+...+..+..++...+.++..++.++......
T Consensus 46 ~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~ 125 (428)
T PRK11637 46 RDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERL 125 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555555444444444444444444444444444444444444444444444444333
Q ss_pred H
Q 006565 348 Y 348 (640)
Q Consensus 348 l 348 (640)
+
T Consensus 126 l 126 (428)
T PRK11637 126 L 126 (428)
T ss_pred H
Confidence 3
No 56
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.07 E-value=0.0029 Score=71.83 Aligned_cols=10 Identities=30% Similarity=0.883 Sum_probs=5.3
Q ss_pred HHHHHHHHHH
Q 006565 166 DWKRKYDQVL 175 (640)
Q Consensus 166 ew~~kYe~~~ 175 (640)
+|....+..+
T Consensus 114 ~~~~~i~~~~ 123 (562)
T PHA02562 114 DFQKYFEQML 123 (562)
T ss_pred HHHHHHHHHH
Confidence 5555555544
No 57
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.92 E-value=0.1 Score=61.90 Aligned_cols=264 Identities=17% Similarity=0.153 Sum_probs=138.8
Q ss_pred hhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhHHHH
Q 006565 186 CSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLA 265 (640)
Q Consensus 186 AAGIsklK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a~L~er~~~~~q~r~~a~ree~~s~le 265 (640)
.+.++.|+.+...+..-...+.+--++-+.++.+.--.++-+-..-.-|++++.+|+.... .+++| .+++...++
T Consensus 275 m~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve-~lkEr----~deletdlE 349 (1243)
T KOG0971|consen 275 MEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVE-ALKER----VDELETDLE 349 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-HHHHH----HHHHHHHHH
Confidence 4444555555555444445555555566666666767777777777778888888888885 88888 666666665
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 266 EKEEEMKEKATKI----EHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDK 341 (640)
Q Consensus 266 ~kE~kie~~k~ei----~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei 341 (640)
-+.++++..=... .---.+|...+..|.+..-+++++.+.-..-. ..+..+++....++..|..-.
T Consensus 350 ILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~----------qK~~kelE~k~sE~~eL~r~k 419 (1243)
T KOG0971|consen 350 ILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDH----------QKLQKELEKKNSELEELRRQK 419 (1243)
T ss_pred HHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH----------HHHHHHHHHHhhHHHHHHHHH
Confidence 5555554431100 00112233334444444444444433221111 111122222222222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 342 VYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADR---ERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQK 418 (640)
Q Consensus 342 ~~L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~---areead~aq~E~~elQr~~~qrlaeIerl~~qIE~lEre~ 418 (640)
..| ..+++++|..+....+++|. |.+.+...=.-..++......++-.|..+++--+-.++-.
T Consensus 420 E~L--------------sr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLeetv~dlEalee~~EQL~ 485 (1243)
T KOG0971|consen 420 ERL--------------SRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEETVGDLEALEEMNEQLQ 485 (1243)
T ss_pred HHH--------------HHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 22233333333333333332 3444445555556666666777666776655544444444
Q ss_pred HHhHHHHhhhcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 006565 419 TDLTNEVNRIRESELEALSK-VALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERR 480 (640)
Q Consensus 419 e~Le~E~~~l~~sEl~al~k-v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re 480 (640)
++...--..|+ .|++-++. +.++..+++.-.+-+=+. .+-+-..++-+..|...|...+.
T Consensus 486 Esn~ele~DLr-eEld~~~g~~kel~~r~~aaqet~yDr-dqTI~KfRelva~Lqdqlqe~~d 546 (1243)
T KOG0971|consen 486 ESNRELELDLR-EELDMAKGARKELQKRVEAAQETVYDR-DQTIKKFRELVAHLQDQLQELTD 546 (1243)
T ss_pred HHHHHHHHHHH-HHHHHHhhHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 55544556677 77887777 778888777777777666 55555555555555555554444
No 58
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=97.88 E-value=0.017 Score=57.80 Aligned_cols=184 Identities=21% Similarity=0.213 Sum_probs=108.3
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhHHHHHHHH
Q 006565 190 EVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEE 269 (640)
Q Consensus 190 sklK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a~L~er~~~~~q~r~~a~ree~~s~le~kE~ 269 (640)
.-++.----+..||..+.+.|.-+..-..|=.+.++.+.+-+-+.+++...+..+.. .++.. .+.-+.
T Consensus 14 ~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLk-EAk~i-----------aE~adr 81 (205)
T KOG1003|consen 14 QLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLK-EAKHI-----------AEKADR 81 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HHHHH-----------HHHHHH
Confidence 333333444444444444444444444455555555555544444444444444432 22222 233344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 270 EMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYK 349 (640)
Q Consensus 270 kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~ 349 (640)
+|++....+.-.+..|...-......+++|..++.+++.+.+.+.+|.-..+.+..+.+.|+.+++.+..-+.+...+=+
T Consensus 82 K~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE 161 (205)
T KOG1003|consen 82 KYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAE 161 (205)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHH
Confidence 77777777777777777777777777888888888888888888888777777777777777777777766666555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 350 SEFERFEEVQERCKVAEKEAKKATELADRERAEAAA 385 (640)
Q Consensus 350 se~er~ee~~~rleeaEee~kea~e~~~~areead~ 385 (640)
+.......+.+..+..+..+...+..+..+..++|.
T Consensus 162 ~aERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD~ 197 (205)
T KOG1003|consen 162 FAERRVAKLEKERDDLEEKLEEAKEKYEEAKKELDE 197 (205)
T ss_pred HHHHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555554444444433
No 59
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.85 E-value=0.14 Score=60.96 Aligned_cols=263 Identities=17% Similarity=0.227 Sum_probs=144.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 217 VEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAE 296 (640)
Q Consensus 217 l~Ewkrky~~L~~QAKkAeek~a~L~er~~~~~q~r~~a~ree~~s~le~kE~kie~~k~ei~~aEq~la~~q~eL~e~e 296 (640)
+.+...++++|.-+-+-...++.+|. +. +....++--.+..+-.+.+.++.++...+.+.+++..--..+..++.+.-
T Consensus 233 vrdLtEkLetlR~kR~EDk~Kl~Ele-km-kiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~a 310 (1243)
T KOG0971|consen 233 VRDLTEKLETLRLKRAEDKAKLKELE-KM-KIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTA 310 (1243)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666666543333333333332 22 23344433336666666777888888888888887777777777888888
Q ss_pred HHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 297 SKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQ----KYKSEFERFEEVQERCKVAEKEAKKA 372 (640)
Q Consensus 297 ~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~e----kl~se~er~ee~~~rleeaEee~kea 372 (640)
.-|.=..-+++.+++++..|...++.++.++++++.++..|+.++.+==. --.-.++.++....|++++=
T Consensus 311 d~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdal------ 384 (1243)
T KOG0971|consen 311 DAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDAL------ 384 (1243)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHH------
Confidence 88888888899999999999999999999999999999999888764300 00011233344444444321
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHH----H-------HH
Q 006565 373 TELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSK----V-------AL 441 (640)
Q Consensus 373 ~e~~~~areead~aq~E~~elQr~~~qrlaeIerl~~qIE~lEre~e~Le~E~~~l~~sEl~al~k----v-------~~ 441 (640)
-+.|........+-.-+++++-....+++.+.++.++|.++++..+..+..+. ..+++--. | -.
T Consensus 385 ----VrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlk-EQVDAAlGAE~MV~qLtdknln 459 (1243)
T KOG0971|consen 385 ----VRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLK-EQVDAALGAEEMVEQLTDKNLN 459 (1243)
T ss_pred ----HHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhcHHHHHHHHHhhccC
Confidence 11222222222222233333333334445555555555555555555555554 33332211 1 12
Q ss_pred HHHHHHHHHHHHHHH--HHhhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006565 442 LEARVEEREKEIESL--LESNNEQR----ASTVKKLEDLLESERRSRAAANAMAERL 492 (640)
Q Consensus 442 lE~~vee~e~eiE~L--~~~~~eq~----~~~l~~le~~le~~re~l~e~nrrleal 492 (640)
+|.+|..++.++++| |..-++|+ .+....|..+|+....++.+++++.++-
T Consensus 460 lEekVklLeetv~dlEalee~~EQL~Esn~ele~DLreEld~~~g~~kel~~r~~aa 516 (1243)
T KOG0971|consen 460 LEEKVKLLEETVGDLEALEEMNEQLQESNRELELDLREELDMAKGARKELQKRVEAA 516 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344444444444333 02222333 2333445555666656666666666653
No 60
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.84 E-value=0.0032 Score=60.31 Aligned_cols=138 Identities=22% Similarity=0.351 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 212 SAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLE 291 (640)
Q Consensus 212 RVkDel~Ewkrky~~L~~QAKkAeek~a~L~er~~~~~q~r~~a~ree~~s~le~kE~kie~~k~ei~~aEq~la~~q~e 291 (640)
+.+=+...|--+++.+..+.|..++........+. .++.+ ...+..+++..+..+..++..+...++..+..-
T Consensus 4 ~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~-sL~~K----~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E-- 76 (143)
T PF12718_consen 4 ALKLEADNAQDRAEELEAKVKQLEQENEQKEQEIT-SLQKK----NQQLEEELDKLEEQLKEAKEKLEESEKRKSNAE-- 76 (143)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH----HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHH--
Confidence 34445556666666666666666666666666664 66666 666666666666666666666666665554332
Q ss_pred HHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 292 LKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEV 358 (640)
Q Consensus 292 L~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~ 358 (640)
.+..+|..++.++......++....++..+..++..+++....|..+...++.+|+....+|..+
T Consensus 77 --~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~~~ 141 (143)
T PF12718_consen 77 --QLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYKEA 141 (143)
T ss_pred --HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 66777777778888888888888888888888888888888888888888877777766666554
No 61
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.84 E-value=0.12 Score=59.88 Aligned_cols=116 Identities=15% Similarity=0.174 Sum_probs=59.5
Q ss_pred HHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 293 KAAESKMRSYEVEISSQKLETKELSEKLEAVNAK----------AQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERC 362 (640)
Q Consensus 293 ~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~e----------ies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rl 362 (640)
...+..+..+...+.++..+...|...+..+... ...++.++..+......+...+......|.++..++
T Consensus 306 ~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~l 385 (569)
T PRK04778 306 KYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEEL 385 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3344444444444444444444444444444444 445555555555555555554444445555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 006565 363 KVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQ 408 (640)
Q Consensus 363 eeaEee~kea~e~~~~areead~aq~E~~elQr~~~qrlaeIerl~ 408 (640)
+...+.+..+.+........+...+++-..+...+......+..+.
T Consensus 386 eel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ik 431 (569)
T PRK04778 386 EEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIK 431 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555555555555444444444443
No 62
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.84 E-value=0.12 Score=60.22 Aligned_cols=73 Identities=11% Similarity=0.120 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006565 317 SEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKG 389 (640)
Q Consensus 317 ~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~areead~aq~E 389 (640)
......++..+..++.....|..+.-.++..+.++...-.++..+|..++..+....+.+.....++...+..
T Consensus 159 lsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q 231 (617)
T PF15070_consen 159 LSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQ 231 (617)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3344556666666666666666666667777777766666666666666666666666666665444444443
No 63
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.80 E-value=0.03 Score=66.08 Aligned_cols=225 Identities=17% Similarity=0.194 Sum_probs=118.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 264 LAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVY 343 (640)
Q Consensus 264 le~kE~kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~ 343 (640)
+..+|.+++.+++++.+..+.-+.++..+..+. +.-..++.+|..+..+.+.++.++.++.+....=++.+..
T Consensus 420 ~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~-------~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~ 492 (697)
T PF09726_consen 420 ISRLEADVKKLRAELQSSRQSEQELRSQISSLT-------NNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQ 492 (697)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcc-------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777766666666555444 4334555556666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 006565 344 LEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTN 423 (640)
Q Consensus 344 L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~areead~aq~E~~elQr~~~qrlaeIerl~~qIE~lEre~e~Le~ 423 (640)
|+.++..+...-..++..|.+-.+.-+.+.+.+..+-..+...+.|-.+..+. .+..++..+..|.+++...+.
T Consensus 493 LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~------r~~~lE~E~~~lr~elk~kee 566 (697)
T PF09726_consen 493 LEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQ------RRRQLESELKKLRRELKQKEE 566 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666544443333332222211111222233332221 122333444444444555555
Q ss_pred HHhhhcHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 006565 424 EVNRIRESELEALSKV-ALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAK 502 (640)
Q Consensus 424 E~~~l~~sEl~al~kv-~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~l~e~nrrleal~~e~~~lqs~ 502 (640)
.+..++ .|...+..+ .+-+..++.+...+..+ +.++.+++..|-.-....-.+=.+|.++.|.++....++..-...
T Consensus 567 ~~~~~e-~~~~~lr~~~~e~~~~~e~L~~aL~am-qdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~e 644 (697)
T PF09726_consen 567 QIRELE-SELQELRKYEKESEKDTEVLMSALSAM-QDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKE 644 (697)
T ss_pred HHHHHH-HHHHHHHHHHhhhhhhHHHHHHHHHHH-HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555 444444443 44444555555555555 666666666665544444455555666666555444433333333
Q ss_pred H
Q 006565 503 L 503 (640)
Q Consensus 503 i 503 (640)
|
T Consensus 645 i 645 (697)
T PF09726_consen 645 I 645 (697)
T ss_pred H
Confidence 3
No 64
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.80 E-value=1.3e-05 Score=94.33 Aligned_cols=147 Identities=18% Similarity=0.226 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhhHHhHHHHHHHhhHHhHHHHHhhHHHHHHHHhHHhhhcchHHhHHhhHHhHHhhhhhhHHHHHHHHHH
Q 006565 95 DNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQV 174 (640)
Q Consensus 95 ~k~~~~~k~le~~~k~~~~~~k~~e~~i~d~kk~~~~~~~~~~~l~~k~~s~ee~~~~l~k~le~~~~e~~ew~~kYe~~ 174 (640)
+++..|...++.......--+-+++-.+.++++-.+....++..|......+.++...+.+.++.+..+....+.++|..
T Consensus 68 ~~l~~Le~e~~~~~~e~~~~~~~le~~~~~l~~~~~~~~~~~~ele~~~~~l~~~~~~le~el~~~~e~~~~~k~~le~~ 147 (722)
T PF05557_consen 68 AQLNQLEYELEQLKQEHERAQLELEKELRELQRQLEREFKRNQELEARLKQLEEREEELEEELEEAEEELEQLKRKLEEE 147 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555444444445666666665555555566667777777777777777777777777666666666554
Q ss_pred HhHhhHh----hHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 175 LTKQKAM----EDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIV 241 (640)
Q Consensus 175 ~~~~k~~----~~~~AAGIsklK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a~L 241 (640)
+..-+.. ..++.-.++.++................+...+..+.+.+..++.+..+...+..++..|
T Consensus 148 ~~~L~~E~~~~~~e~~~~~~~l~~~~~~l~~~~~~~e~~~~~l~~e~~~l~~~le~~~~~~~e~e~~~~~L 218 (722)
T PF05557_consen 148 KRRLQREKEQLLEEAREEISSLKNELSELERQAENAESQIQSLESELEELKEQLEELQSELQEAEQQLQEL 218 (722)
T ss_dssp -----------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4333111 111222233344444444444444444455555555555555555555554444444444
No 65
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.80 E-value=0.03 Score=66.14 Aligned_cols=93 Identities=11% Similarity=0.160 Sum_probs=39.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 260 FSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQ 339 (640)
Q Consensus 260 ~~s~le~kE~kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ 339 (640)
+..++..+..++...++-=.++...++.+...=..+-+.+..+..+-..++.++..|......=+.-+..+|+++.....
T Consensus 423 LE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~ 502 (697)
T PF09726_consen 423 LEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERR 502 (697)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444443333333333333222223333333333444444444444444444444444444555444444
Q ss_pred HHHHHHHHHHHHH
Q 006565 340 DKVYLEQKYKSEF 352 (640)
Q Consensus 340 ei~~L~ekl~se~ 352 (640)
-+..++.++..+.
T Consensus 503 ~R~~lEkQL~eEr 515 (697)
T PF09726_consen 503 QRASLEKQLQEER 515 (697)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444444
No 66
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=97.75 E-value=0.17 Score=59.42 Aligned_cols=110 Identities=14% Similarity=0.107 Sum_probs=84.5
Q ss_pred HHHHhhHHHHHHHHhHHhhhcchHHhHHhhHHhHHhhhhhhHHHHHHHHHHHhHhhHhhHHHhhhHHHHhhhhHHHHHHH
Q 006565 124 DKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARL 203 (640)
Q Consensus 124 d~kk~~~~~~~~~~~l~~k~~s~ee~~~~l~k~le~~~~e~~ew~~kYe~~~~~~k~~~~~~AAGIsklK~Rkkeae~RL 203 (640)
|-.+.+-+..+++-.| .-+.+|+.....+=+.+++++-..+--+.|-..++..--.--..-+.|.+|+.+|...+..+
T Consensus 45 ~aeniiqdlrserdal--he~lvdkaglneSviie~sk~vstqetriyRrdv~llEddlk~~~sQiriLQn~c~~lE~ek 122 (1265)
T KOG0976|consen 45 DAENIIQDLRSERDAL--HESLVDKAGLNESVIIEQSKKVSTQETRIYRRDVNLLEDDLKHHESQIRILQNKCLRLEMEK 122 (1265)
T ss_pred HHHHHHHHHHhhHHHH--HHHHHHHhhccchhhhhhcchhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555444 34667888888888899999999999999999999887777788899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 204 AAAREQALSAQEEVEEWKRKYGVAVREAKAAL 235 (640)
Q Consensus 204 ~at~enL~RVkDel~Ewkrky~~L~~QAKkAe 235 (640)
.+......+++|-+.|-+--++.+-..+-..+
T Consensus 123 q~lQ~ti~~~q~d~ke~etelE~~~srlh~le 154 (1265)
T KOG0976|consen 123 QKLQDTIQGAQDDKKENEIEIENLNSRLHKLE 154 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99988888888877666666665555444444
No 67
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.75 E-value=0.23 Score=60.78 Aligned_cols=189 Identities=12% Similarity=0.157 Sum_probs=92.5
Q ss_pred hhHHHHHHHHHHHhHhhHhhHHHh-hhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 163 EISDWKRKYDQVLTKQKAMEDQVC-SEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIV 241 (640)
Q Consensus 163 e~~ew~~kYe~~~~~~k~~~~~~A-AGIsklK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a~L 241 (640)
++.+--+.|++.|...+.....+. ..++.++..-++...+++...+...-+.-.+...+..++.+.. ..+.+..-
T Consensus 462 ~~~~~~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~----~~~~~~~~ 537 (1317)
T KOG0612|consen 462 ELEEMDKELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQK----KNDNAADS 537 (1317)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 445566677777776654444444 3555566666666666665555544444333333333333311 11111111
Q ss_pred HHhhhHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHH
Q 006565 242 QERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLE 321 (640)
Q Consensus 242 ~er~~~~~q~r~~a~ree~~s~le~kE~kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle 321 (640)
..+.+ .+...+++....+.+++ .+..........+...+....+.-+..+..+..++.....|.....
T Consensus 538 ~~kv~-~~rk~le~~~~d~~~e~-----------~~~~kl~~~~~e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~ 605 (1317)
T KOG0612|consen 538 LEKVN-SLRKQLEEAELDMRAES-----------EDAGKLRKHSKELSKQIQQELEENRDLEDKLSLLEESKSKLSKENK 605 (1317)
T ss_pred HhhHH-HHHHHHHHhhhhhhhhH-----------HHHhhHhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHH
Confidence 12221 11111111122222221 2222223333333444444444555666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 322 AVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEK 367 (640)
Q Consensus 322 ~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEe 367 (640)
.+...++........+...+..+...+.+...........+..++.
T Consensus 606 ~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~e 651 (1317)
T KOG0612|consen 606 KLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKELLKVEE 651 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHH
Confidence 6666666666666666666666666666666555555555555444
No 68
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=97.66 E-value=0.081 Score=53.06 Aligned_cols=120 Identities=23% Similarity=0.269 Sum_probs=85.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 006565 389 GKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSK-VALLEARVEEREKEIESLLESNNEQRAST 467 (640)
Q Consensus 389 E~~elQr~~~qrlaeIerl~~qIE~lEre~e~Le~E~~~l~~sEl~al~k-v~~lE~~vee~e~eiE~L~~~~~eq~~~~ 467 (640)
...+.-+.+.=...++++....-+.-+..+..|..+...+. +.+..|+. ...+..+.+..+..+..+ ..+..+-.-.
T Consensus 82 K~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~-~nlk~l~~~ee~~~q~~d~~e~~ik~l-tdKLkEaE~r 159 (205)
T KOG1003|consen 82 KYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILD-SNLKSLSAKEEKLEQKEEKYEEELKEL-TDKLKEAETR 159 (205)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhH-hHHHHHHHHHHHHhhhHHHHHHHHHHH-HHHHhhhhhh
Confidence 33344666777778888888888888889999999999998 88888888 888888888888888877 6666444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Q 006565 468 VKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQEL 510 (640)
Q Consensus 468 l~~le~~le~~re~l~e~nrrleal~~e~~~lqs~id~Leg~~ 510 (640)
-+..+..+..+...+.....++......+..++..||-.-+.+
T Consensus 160 AE~aERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD~~~~~L 202 (205)
T KOG1003|consen 160 AEFAERRVAKLEKERDDLEEKLEEAKEKYEEAKKELDETLQEL 202 (205)
T ss_pred HHHHHHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 4444445555555555666666777777777777777654443
No 69
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.61 E-value=0.27 Score=57.70 Aligned_cols=190 Identities=16% Similarity=0.157 Sum_probs=88.2
Q ss_pred HHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHH-Hh
Q 006565 183 DQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREE-FS 261 (640)
Q Consensus 183 ~~~AAGIsklK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a~L~er~~~~~q~r~~a~ree-~~ 261 (640)
+-|.-|-+.|..|+..++..-. ++.-.+.+.+-.||.++-+....|-.+++..+..-.++.. +++.+ |++ -.
T Consensus 320 eNy~kGqaELerRRq~leeqqq--reree~eqkEreE~ekkererqEqErk~qlElekqLerQR-eiE~q----rEEerk 392 (1118)
T KOG1029|consen 320 ENYEKGQAELERRRQALEEQQQ--REREEVEQKEREEEEKKERERQEQERKAQLELEKQLERQR-EIERQ----REEERK 392 (1118)
T ss_pred HhHhhhhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH----HHHHHH
Confidence 4466677777666666665433 3344455566677877777666666665543333112211 22222 111 11
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 262 STLAEKEEEMKEKA--TKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQ 339 (640)
Q Consensus 262 s~le~kE~kie~~k--~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ 339 (640)
..++..|+--+++. ..+.=-.-+.+.|...-+.-...|--+......++.++..|+.++..+..++.--.-.+-..++
T Consensus 393 keie~rEaar~ElEkqRqlewErar~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt 472 (1118)
T KOG1029|consen 393 KEIERREAAREELEKQRQLEWERARRQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKT 472 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHH
Confidence 11111111000000 0000000011111111122222233344455555555556666666665555555555566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 340 DKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRE 379 (640)
Q Consensus 340 ei~~L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~a 379 (640)
+|..++...+.....+..+..++++.+...-...-+-...
T Consensus 473 ~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l 512 (1118)
T KOG1029|consen 473 EIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQEL 512 (1118)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 6666666666666666666666666655554444443333
No 70
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=97.59 E-value=0.35 Score=58.31 Aligned_cols=254 Identities=16% Similarity=0.197 Sum_probs=146.6
Q ss_pred hhhcCchhHHHHHHHHHHhhHHhHHHHHHHhhHHhHHHHHhhHHHHHHHHhHHhhhcchHHhHHhhHHhHHhhhhhhHHH
Q 006565 88 LKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDW 167 (640)
Q Consensus 88 ~~c~s~~~k~~~~~k~le~~~k~~~~~~k~~e~~i~d~kk~~~~~~~~~~~l~~k~~s~ee~~~~l~k~le~~~~e~~ew 167 (640)
.-|---+.|+-.|..+| ..+.+...++..-|.|++.-++...-++-++..--+ ++..-...|++...-+--|
T Consensus 177 velAdle~kir~LrqEl----EEK~enll~lr~eLddleae~~klrqe~~e~l~ea~----ra~~yrdeldalre~aer~ 248 (1195)
T KOG4643|consen 177 VELADLEKKIRTLRQEL----EEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAH----RADRYRDELDALREQAERP 248 (1195)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhhhhhHHHHHHHhhhcC
Confidence 33333344444444433 455677777777777777777777666666654433 3345567888888888888
Q ss_pred HHHHHHHHhHhhHhhHHHhhhHHHHhhh-------hHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 168 KRKYDQVLTKQKAMEDQVCSEIEVLKSR-------STAAEARLAAAREQA--LSAQEEVEEWKRKYGVAVREAKAALEKA 238 (640)
Q Consensus 168 ~~kYe~~~~~~k~~~~~~AAGIsklK~R-------kkeae~RL~at~enL--~RVkDel~Ewkrky~~L~~QAKkAeek~ 238 (640)
=-+|-..+- +++.|++++-.+|.- +.=++..|..++.+- -...-+|.-.+.+++.+..+--..+.+.
T Consensus 249 d~~ykerlm----Ds~fykdRveelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kt 324 (1195)
T KOG4643|consen 249 DTTYKERLM----DSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKT 324 (1195)
T ss_pred CCccchhhh----hhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 888887654 456677777777765 333444444444444 2334556667777777777777777777
Q ss_pred HHHHHhhhHHHhhhHHHHHHHHhHHHHHHHH-------HHHHHHH------------HHHHHHHHHHHH----HHHHHHH
Q 006565 239 AIVQERTSKEMQQREDVLREEFSSTLAEKEE-------EMKEKAT------------KIEHAEQCLTTL----RLELKAA 295 (640)
Q Consensus 239 a~L~er~~~~~q~r~~a~ree~~s~le~kE~-------kie~~k~------------ei~~aEq~la~~----q~eL~e~ 295 (640)
+.|..... .++-. .+++....+-+.. .-.-+.. -+.+.......+ ...+.+.
T Consensus 325 eeL~eEns-tLq~q----~eqL~~~~ellq~~se~~E~en~Sl~~e~eqLts~ralkllLEnrrlt~tleelqsss~Ee~ 399 (1195)
T KOG4643|consen 325 EELHEENS-TLQVQ----KEQLDGQMELLQIFSENEELENESLQVENEQLTSDRALKLLLENRRLTGTLEELQSSSYEEL 399 (1195)
T ss_pred HHHHHHHH-HHHHH----HHHhhhhhhHhhhhhcchhhhhhhHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHhhhhHHHH
Confidence 77666653 55555 3333333222111 1111111 111111111111 2255777
Q ss_pred HHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 296 ESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEV 358 (640)
Q Consensus 296 e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~ 358 (640)
.+++-.++++-+.+......|++++.........++.....|..|...|.+.......-+.+.
T Consensus 400 ~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq 462 (1195)
T KOG4643|consen 400 ISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQ 462 (1195)
T ss_pred HHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 777777777666677777777777777766666666666666666666655555555444433
No 71
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=97.58 E-value=3e-05 Score=91.09 Aligned_cols=30 Identities=20% Similarity=0.340 Sum_probs=0.0
Q ss_pred HHhHHHHHHhhhcCchhHHHHHHHHHHhhH
Q 006565 79 IGSERSSLMLKYRSIEDNMKLLKKQLEDSE 108 (640)
Q Consensus 79 i~~~~~~l~~~c~s~~~k~~~~~k~le~~~ 108 (640)
+..++..|.-.|+-.+..+..|....+.+.
T Consensus 184 ~~~e~d~l~q~~~el~~~i~~L~~e~~~L~ 213 (713)
T PF05622_consen 184 LVAERDELAQRCHELEKQISDLQEEKESLQ 213 (713)
T ss_dssp ------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHhh
Confidence 334455555566665555555555544444
No 72
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.52 E-value=0.022 Score=54.64 Aligned_cols=55 Identities=18% Similarity=0.270 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 329 SFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEA 383 (640)
Q Consensus 329 s~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~areea 383 (640)
++.+++..|..++......+....+++.++..+.+.++..++.+..+.+.....+
T Consensus 77 ~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~ 131 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKY 131 (143)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHH
Confidence 4555555555555555555555555555555555555555554444444443333
No 73
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.47 E-value=0.51 Score=57.48 Aligned_cols=22 Identities=18% Similarity=0.312 Sum_probs=14.0
Q ss_pred HHhhhhcccCCchHHHHHHHHHHh
Q 006565 40 ISEYETSCHGPGKWQKLATFLQQS 63 (640)
Q Consensus 40 l~~y~~s~~G~g~~~k~~~~L~~~ 63 (640)
.+.|.-++++|-- .+..||...
T Consensus 131 ~~~f~~~v~l~QG--e~~~fl~~~ 152 (908)
T COG0419 131 KDTFTRSVYLPQG--EFDAFLKSK 152 (908)
T ss_pred HHHHhHHheeccH--hHHHHHhcC
Confidence 4678888887732 566666543
No 74
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=97.44 E-value=0.41 Score=55.69 Aligned_cols=97 Identities=13% Similarity=0.160 Sum_probs=63.3
Q ss_pred HHHHHHHhHHhhhcchHHhHHhhHHhHHhhhhhhHHH---HHHHHHHHhHhhHhhHHHhhhHHHHhhhhHHHHHHHHHHH
Q 006565 131 DYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDW---KRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAR 207 (640)
Q Consensus 131 ~~~~~~~~l~~k~~s~ee~~~~l~k~le~~~~e~~ew---~~kYe~~~~~~k~~~~~~AAGIsklK~Rkkeae~RL~at~ 207 (640)
...-+.+.|+.+|.-=|..+.-|.=.|.-+...+... .+.-.+.+..-+...|.+.+.....|.-+..+..-..+..
T Consensus 237 ~kEkqvs~L~~q~~eKen~~kdl~~~l~es~~~~~qLeE~~~~q~E~Lkes~~~qe~L~~eL~~~K~slq~~~~tq~~le 316 (786)
T PF05483_consen 237 DKEKQVSLLQTQLKEKENKIKDLLLLLQESQDKCNQLEEKTKEQHENLKESNEEQEHLLQELEDIKQSLQESESTQKALE 316 (786)
T ss_pred hHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566777777777888888877777777766543 3444556666777777777777777776666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 006565 208 EQALSAQEEVEEWKRKYGVA 227 (640)
Q Consensus 208 enL~RVkDel~Ewkrky~~L 227 (640)
.+|+-+...+..+...-++-
T Consensus 317 ~~lq~~~k~~~qlt~eKe~~ 336 (786)
T PF05483_consen 317 EDLQQATKTLIQLTEEKEAQ 336 (786)
T ss_pred HHHHHHHHHHHHHHHhHHHH
Confidence 66666665555554443333
No 75
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=97.37 E-value=0.29 Score=52.19 Aligned_cols=222 Identities=18% Similarity=0.261 Sum_probs=109.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHH---HHHHH
Q 006565 257 REEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQ---SFERE 333 (640)
Q Consensus 257 ree~~s~le~kE~kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eie---s~e~e 333 (640)
|.++..++.....+-+.+.++...+...+.+++....++..++..+-++..-....+..|-..+..+...+. ..-..
T Consensus 29 R~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~~~~~~~ 108 (294)
T COG1340 29 RDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFNLGGRS 108 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCC
Confidence 444444444444455556666666666666666666666666666666666555666666666655555555 33445
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 006565 334 ARIMEQDKVYLEQKYKSEF---ERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQ 410 (640)
Q Consensus 334 l~~L~~ei~~L~ekl~se~---er~ee~~~rleeaEee~kea~e~~~~areead~aq~E~~elQr~~~qrlaeIerl~~q 410 (640)
+..+..+|..|...+.+.- ..-..+..++..+.+.+..+....... ..+.....++..+..........|..+-.+
T Consensus 109 ~~~ler~i~~Le~~~~T~~L~~e~E~~lvq~I~~L~k~le~~~k~~e~~-~~~~el~aei~~lk~~~~e~~eki~~la~e 187 (294)
T COG1340 109 IKSLEREIERLEKKQQTSVLTPEEERELVQKIKELRKELEDAKKALEEN-EKLKELKAEIDELKKKAREIHEKIQELANE 187 (294)
T ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666655555433 111222233333333322222111111 111122233333333344444444444455
Q ss_pred HHHHHHHHHHhHHHHhhhcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 411 IESLERQKTDLTNEVNRIRESELEALSK-VALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAM 488 (640)
Q Consensus 411 IE~lEre~e~Le~E~~~l~~sEl~al~k-v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~l~e~nrr 488 (640)
++....++..+-.+.+.++ .+.+.+.. +..+-..+++...++..+ +..|..++..|..++..-....++
T Consensus 188 aqe~he~m~k~~~~~De~R-keade~he~~ve~~~~~~e~~ee~~~~--------~~elre~~k~ik~l~~~~~~~~~~ 257 (294)
T COG1340 188 AQEYHEEMIKLFEEADELR-KEADELHEEFVELSKKIDELHEEFRNL--------QNELRELEKKIKALRAKEKAAKRR 257 (294)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555666 55555555 555555555555555555 455555555555555444443333
No 76
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=97.30 E-value=0.34 Score=51.66 Aligned_cols=89 Identities=11% Similarity=0.248 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 405 ERVQRQIESLERQKTDLTNEVNRIRESELEALSK-VALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRA 483 (640)
Q Consensus 405 erl~~qIE~lEre~e~Le~E~~~l~~sEl~al~k-v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~l~ 483 (640)
..+..+++.+......+-..+..+. .+.+.+.. ...+-...++.+.+.+.+ -.........+..+...+......+.
T Consensus 161 ~el~aei~~lk~~~~e~~eki~~la-~eaqe~he~m~k~~~~~De~Rkeade~-he~~ve~~~~~~e~~ee~~~~~~elr 238 (294)
T COG1340 161 KELKAEIDELKKKAREIHEKIQELA-NEAQEYHEEMIKLFEEADELRKEADEL-HEEFVELSKKIDELHEEFRNLQNELR 238 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444 44444444 444445555555555555 44444444444444444444444444
Q ss_pred HHHHHHHHhhHH
Q 006565 484 AANAMAERLSLE 495 (640)
Q Consensus 484 e~nrrleal~~e 495 (640)
..+..+.++...
T Consensus 239 e~~k~ik~l~~~ 250 (294)
T COG1340 239 ELEKKIKALRAK 250 (294)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 77
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.30 E-value=0.00015 Score=85.43 Aligned_cols=233 Identities=18% Similarity=0.228 Sum_probs=0.0
Q ss_pred HHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH--HHHHHHHHHhhhHHHhhhHHHHHHHH
Q 006565 184 QVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVRE-AKAA--LEKAAIVQERTSKEMQQREDVLREEF 260 (640)
Q Consensus 184 ~~AAGIsklK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~Q-AKkA--eek~a~L~er~~~~~q~r~~a~ree~ 260 (640)
++-..+..+....+.+...+......++.....+.+...++..|... +.-+ ......|+..+. ..... .++...+
T Consensus 175 ~l~~~~~~~e~~~~~l~~e~~~l~~~le~~~~~~~e~e~~~~~L~~~q~~~~e~e~~i~~Le~el~-~~~~~-~~i~k~l 252 (722)
T PF05557_consen 175 ELERQAENAESQIQSLESELEELKEQLEELQSELQEAEQQLQELQASQASLAEAEQKIKELEAELK-DQESD-AEINKEL 252 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-hHhhH-HHHHHHH
Confidence 33344455556666666667777777777777666666666666332 1111 122222222221 11111 0011111
Q ss_pred hH---HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH---hhHHHHHhhHHHHHHHHHHHHHHHHHHHHH--
Q 006565 261 SS---TLAEKEEEMKEKATKIEHAEQCLTTL---RLELKAAESKM---RSYEVEISSQKLETKELSEKLEAVNAKAQS-- 329 (640)
Q Consensus 261 ~s---~le~kE~kie~~k~ei~~aEq~la~~---q~eL~e~e~kI---k~~e~ei~~le~el~~L~ekle~~~~eies-- 329 (640)
.. .+..++.....+..++....+..... ..+...+..++ ...+.++..++-+...|..++..|.+-+..
T Consensus 253 ~~ql~~i~~LE~en~~l~~Elk~Lr~~~~n~elLeEe~~sLq~kl~~~E~~~~el~~lq~e~~~Le~el~sW~sl~~~~~ 332 (722)
T PF05557_consen 253 KEQLAHIRELEKENRRLREELKHLRQSQENVELLEEEKRSLQRKLERLEELEEELAELQLENEKLEDELNSWESLLQDIG 332 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 11 12233333333333332222221111 12222222222 222244444444444444444444443332
Q ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 006565 330 --------FEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERM 401 (640)
Q Consensus 330 --------~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~areead~aq~E~~elQr~~~qrl 401 (640)
....+..+..+...|..++.+....+......+..++.++..+...+..++..+.........+++...=..
T Consensus 333 ~~~~sPe~l~~~l~~lq~~~~~L~ek~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~ 412 (722)
T PF05557_consen 333 LEFDSPEDLARALVQLQQENASLTEKLGSLQSELRELEEEIQELEQEKEQLLKEIEELEASLEALKKLIRRLERQKALAT 412 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233444455555555555555555555555555555555555556666665555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHH
Q 006565 402 AVIERVQRQIESLERQK 418 (640)
Q Consensus 402 aeIerl~~qIE~lEre~ 418 (640)
.+++-++++++....+.
T Consensus 413 kE~d~LR~~L~syd~e~ 429 (722)
T PF05557_consen 413 KERDYLRAQLKSYDKEE 429 (722)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHhhhhh
Confidence 55566666555555443
No 78
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=97.29 E-value=0.45 Score=52.98 Aligned_cols=72 Identities=17% Similarity=0.255 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 270 EMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDK 341 (640)
Q Consensus 270 kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei 341 (640)
.++....++...++.++..+..+..++..|+.++.++..++.++......+..+...|...+..+..|..+.
T Consensus 39 ~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 39 QLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 445555555555556666666666666666666666666666666666666665555555555555555444
No 79
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=97.28 E-value=0.38 Score=51.77 Aligned_cols=104 Identities=14% Similarity=0.191 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 006565 312 ETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKS 391 (640)
Q Consensus 312 el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~areead~aq~E~~ 391 (640)
++..+......+...+..|......+..-+.--.+-|.+..+.|+...+.+..++++.......++ ....-..
T Consensus 203 ~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e-------~~n~~l~ 275 (309)
T PF09728_consen 203 QVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWE-------KSNKALI 275 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhHHHH
Confidence 334444444444444444444444444444444444444444444444444444444333333333 3344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 006565 392 EFENLAMERMAVIERVQRQIESLERQKTDLT 422 (640)
Q Consensus 392 elQr~~~qrlaeIerl~~qIE~lEre~e~Le 422 (640)
.+-........+++.+..+++.|+.-|-.|+
T Consensus 276 ~m~eer~~~~~~~~~~~~k~~kLe~LcRaLQ 306 (309)
T PF09728_consen 276 EMAEERQKLEKELEKLKKKIEKLEKLCRALQ 306 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444445555555666666665555554443
No 80
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=97.28 E-value=0.13 Score=59.93 Aligned_cols=37 Identities=16% Similarity=0.335 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 006565 439 VALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLE 476 (640)
Q Consensus 439 v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le 476 (640)
+-++-+.|.-++.+|+.. -.+...++.+|..+.+.+.
T Consensus 493 IlEIv~NI~KQk~eI~KI-l~DTr~lQkeiN~l~gkL~ 529 (594)
T PF05667_consen 493 ILEIVKNIRKQKEEIEKI-LSDTRELQKEINSLTGKLD 529 (594)
T ss_pred HHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 667777777777777777 6666666666666666554
No 81
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=97.28 E-value=0.66 Score=54.50 Aligned_cols=66 Identities=8% Similarity=0.153 Sum_probs=41.8
Q ss_pred HHhHHHHHHHhhH--HhHHHHHhhHHHHHHHHhHHhhhcchHHhHHhhHHhHHhhhhhhHHHHHHHHH
Q 006565 108 ERYKSEYLKRYDD--AINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQ 173 (640)
Q Consensus 108 ~k~~~~~~k~~e~--~i~d~kk~~~~~~~~~~~l~~k~~s~ee~~~~l~k~le~~~~e~~ew~~kYe~ 173 (640)
..+...|.+++.. ++.++.+-.+.+..++.+++.+...++.....+..+++.+.....+....|..
T Consensus 188 ~~dl~~~~~~~~~~~~~~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~ 255 (650)
T TIGR03185 188 AGDLTNVLRRRKKSELPSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRS 255 (650)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455554433 33444666677777777777777777777777777777777666666666555
No 82
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=97.19 E-value=0.58 Score=52.15 Aligned_cols=67 Identities=15% Similarity=0.237 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 283 QCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYK 349 (640)
Q Consensus 283 q~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~ 349 (640)
+++...+.++..++.+|.........++.+|+.++....++...+-.....+..+...|..+...+.
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~ 104 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLN 104 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHH
Confidence 4444445555555555555555555555555555554444444444444444444444444433333
No 83
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=97.19 E-value=0.2 Score=54.07 Aligned_cols=170 Identities=19% Similarity=0.251 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Q 006565 278 IEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFE-------REARIMEQDKVYLEQKYKS 350 (640)
Q Consensus 278 i~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e-------~el~~L~~ei~~L~ekl~s 350 (640)
+...-+.+..+..+|.....+...|-.....++.+-..|..++..+.-....+- +.-..|.+-+....+.-..
T Consensus 4 L~SK~eAL~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~ 83 (319)
T PF09789_consen 4 LQSKSEALLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKK 83 (319)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHH
Confidence 344455566667777777777777777777777766666666655552222111 1222233333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcH
Q 006565 351 EFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRE 430 (640)
Q Consensus 351 e~er~ee~~~rleeaEee~kea~e~~~~areead~aq~E~~elQr~~~qrlaeIerl~~qIE~lEre~e~Le~E~~~l~~ 430 (640)
....+..+..++.+++..++-.++.....+......-...+- .....+..+++.++.++..+++.+..+.+++..+-
T Consensus 84 L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~--~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~- 160 (319)
T PF09789_consen 84 LKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFP--HEREDLVEQLEKLREQIEQLERDLQSLLDEKEELV- 160 (319)
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 333344444444444444444444444443333222111111 55566667777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 431 SELEALSKVALLEARVEEREKEIESL 456 (640)
Q Consensus 431 sEl~al~kv~~lE~~vee~e~eiE~L 456 (640)
.|-+++.. .++.++.++..+
T Consensus 161 ~ERD~yk~------K~~RLN~ELn~~ 180 (319)
T PF09789_consen 161 TERDAYKC------KAHRLNHELNYI 180 (319)
T ss_pred HHHHHHHH------HHHHHHHHHHHH
Confidence 66666554 344444444444
No 84
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=97.18 E-value=0.83 Score=53.66 Aligned_cols=63 Identities=19% Similarity=0.217 Sum_probs=31.2
Q ss_pred hHHhhhhhhHHHHHHHHHHHhHhhHhhHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 156 TVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVRE 230 (640)
Q Consensus 156 ~le~~~~e~~ew~~kYe~~~~~~k~~~~~~AAGIsklK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~Q 230 (640)
.++....+..+|.+++...+. ++....+..+++.++.....+.+.+...+..+..+++.+..+
T Consensus 183 ~~~~L~~dl~~~~~~~~~~~~------------~~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~ 245 (650)
T TIGR03185 183 LIDRLAGDLTNVLRRRKKSEL------------PSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRS 245 (650)
T ss_pred HHHHHHHHHHHHHHHHHhccc------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366677777777766544331 122334444444444444444444444444444444444433
No 85
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.12 E-value=1.2 Score=54.36 Aligned_cols=154 Identities=16% Similarity=0.213 Sum_probs=63.4
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhHHHHHHHHHH
Q 006565 192 LKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEM 271 (640)
Q Consensus 192 lK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a~L~er~~~~~q~r~~a~ree~~s~le~kE~ki 271 (640)
+|..+.+++.- ..+.....+++-+.+=|+ +=.++.+-.++.+.++.+++.+. .+..+ +... +.++
T Consensus 193 aK~~k~eaeky-~~lkde~~~~q~e~~L~q--LfhvE~~i~k~~~els~~~~ei~-~~~~~----~d~~-------e~ei 257 (1141)
T KOG0018|consen 193 AKEGKEEAEKY-QRLKDEKGKAQKEQFLWE--LFHVEACIEKANDELSRLNAEIP-KLKER----MDKK-------EREI 257 (1141)
T ss_pred HHhhHHHHHHH-HHHHHHHHHHHHHHHHHH--HhhhhhhHhhhhHHHHHHhhhhH-HHHhh----hhHH-------HHHH
Confidence 34444444442 334444445544444443 22334444455566666666653 55555 3333 3333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 272 KEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSE 351 (640)
Q Consensus 272 e~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se 351 (640)
...+.+.......+..+-..+..++..+.. .-++=....+...+..++..+.-.+...+.....+...+..++..+...
T Consensus 258 ~~~k~e~~ki~re~~~~Dk~i~~ke~~l~e-rp~li~~ke~~~~~k~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av 336 (1141)
T KOG0018|consen 258 RVRKKERGKIRRELQKVDKKISEKEEKLAE-RPELIKVKENASHLKKRLEEIEKDIETAKKDYRALKETIERLEKELKAV 336 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHhhcchhhccchhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333 1111112233333344444444444444444444444444444444444
Q ss_pred HHHHHHHHHH
Q 006565 352 FERFEEVQER 361 (640)
Q Consensus 352 ~er~ee~~~r 361 (640)
.......+++
T Consensus 337 ~~~~~~feke 346 (1141)
T KOG0018|consen 337 EGAKEEFEKE 346 (1141)
T ss_pred HHHHHHHHHH
Confidence 4443333333
No 86
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=97.10 E-value=0.94 Score=52.87 Aligned_cols=308 Identities=19% Similarity=0.164 Sum_probs=155.0
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhHHHHHHHHH
Q 006565 191 VLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEE 270 (640)
Q Consensus 191 klK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a~L~er~~~~~q~r~~a~ree~~s~le~kE~k 270 (640)
.|-.|..+++.|..++-..-+.++-++.-++.-+-...+ .+.++.-.+.++ .+... =+.+......-.+.
T Consensus 406 e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l~-----~DeLaEkdE~I~-~lm~E----GEkLSK~ql~qs~i 475 (961)
T KOG4673|consen 406 EYHQRVATLEKKVQALTKERDALRREQKSLKKELAAALL-----KDELAEKDEIIN-QLMAE----GEKLSKKQLAQSAI 475 (961)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhh-----hHHHHHHHHHHH-HHHHH----HHHhHHHHHHHHHH
Confidence 344555566666665554444444333333332222111 155566666665 66655 55666665555667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 271 MKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKS 350 (640)
Q Consensus 271 ie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~s 350 (640)
|..+++++++.+--.....+.+..+.++...+..-+...+.--+.+.+......++..+.+.....+.-.+..|+.+...
T Consensus 476 IkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a 555 (961)
T KOG4673|consen 476 IKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQALA 555 (961)
T ss_pred HHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 77777777766643333333333333333333333333333344455555555666666666666666666677777777
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 006565 351 EFERFEEVQERCK-VAEKEAKKATELADRERAEAAAAR-----KGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNE 424 (640)
Q Consensus 351 e~er~ee~~~rle-eaEee~kea~e~~~~areead~aq-----~E~~elQr~~~qrlaeIerl~~qIE~lEre~e~Le~E 424 (640)
+...|+++...+. ..--.-++++.+...+-..+...| +|...+.+.-+=| -+|..|+++++..+++++.+..+
T Consensus 556 ~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R-~Ei~~LqrRlqaaE~R~eel~q~ 634 (961)
T KOG4673|consen 556 EQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAARREDMFR-GEIEDLQRRLQAAERRCEELIQQ 634 (961)
T ss_pred HHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhh
Confidence 7766666665331 110011133333222222222221 1222222222222 23566666666666665554433
Q ss_pred -----------HhhhcHH-----------H---HHHHHH-HHHHHHHHHHHHHHHHHHHHhhH----HHHHHHHHHHHHH
Q 006565 425 -----------VNRIRES-----------E---LEALSK-VALLEARVEEREKEIESLLESNN----EQRASTVKKLEDL 474 (640)
Q Consensus 425 -----------~~~l~~s-----------E---l~al~k-v~~lE~~vee~e~eiE~L~~~~~----eq~~~~l~~le~~ 474 (640)
|..|..+ | .+.+.. .+.+-..|.+-+.+.++||.-.+ ..++..+ ++.+
T Consensus 635 v~~TTrPLlRQIE~lQ~tl~~~~tawereE~~l~~rL~dSQtllr~~v~~eqgekqElL~~~~~l~s~~~q~sl--lraE 712 (961)
T KOG4673|consen 635 VPETTRPLLRQIEALQETLSKAATAWEREERSLNERLSDSQTLLRINVLEEQGEKQELLSLNFSLPSSPIQLSL--LRAE 712 (961)
T ss_pred ccccccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhHHHHHHHhcCCCcchhHHHH--HHHH
Confidence 2222211 1 122222 44445555555566666644444 2233333 5666
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhh
Q 006565 475 LESERRSRAAANAMAERLSLEVQSAQAKLDEMQQELT 511 (640)
Q Consensus 475 le~~re~l~e~nrrleal~~e~~~lqs~id~Leg~~~ 511 (640)
-.-++..+..+..|+...+-++..+|..++.++|...
T Consensus 713 ~~~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~ 749 (961)
T KOG4673|consen 713 QGQLSKSLEKERNRAAENRQEYLAAQEEADTLEGRAN 749 (961)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 6667777777777777788888888888888777663
No 87
>PRK11281 hypothetical protein; Provisional
Probab=97.10 E-value=0.73 Score=57.29 Aligned_cols=50 Identities=12% Similarity=0.156 Sum_probs=32.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 006565 459 SNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQ 508 (640)
Q Consensus 459 ~~~eq~~~~l~~le~~le~~re~l~e~nrrleal~~e~~~lqs~id~Leg 508 (640)
..|.++.+.+......+..+..+..+....++.+......++..++.+.|
T Consensus 285 ~~N~~Ls~~L~~~t~~~~~l~~~~~~~~~~l~~~~q~~~~i~eqi~~l~~ 334 (1113)
T PRK11281 285 EINLQLSQRLLKATEKLNTLTQQNLRVKNWLDRLTQSERNIKEQISVLKG 334 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44566677777777777777666666666666666666666666666554
No 88
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=97.03 E-value=0.12 Score=49.48 Aligned_cols=108 Identities=19% Similarity=0.258 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHH-HHHHH
Q 006565 365 AEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSK-VALLE 443 (640)
Q Consensus 365 aEee~kea~e~~~~areead~aq~E~~elQr~~~qrlaeIerl~~qIE~lEre~e~Le~E~~~l~~sEl~al~k-v~~lE 443 (640)
....++++....+.....+.....+...+|........+-+..++-|+.++.++..+..++.+++ .++..+.+ ...+.
T Consensus 8 v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~-~EL~~l~sEk~~L~ 86 (140)
T PF10473_consen 8 VEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLE-LELDTLRSEKENLD 86 (140)
T ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 33444444444444444444445555555555444444445555555555555555555555555 55555555 55555
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 006565 444 ARVEEREKEIESLLESNNEQRASTVKKLEDL 474 (640)
Q Consensus 444 ~~vee~e~eiE~L~~~~~eq~~~~l~~le~~ 474 (640)
..++.-+..+..| ...+.....-|+.++..
T Consensus 87 k~lq~~q~kv~eL-E~~~~~~~~~l~~~E~e 116 (140)
T PF10473_consen 87 KELQKKQEKVSEL-ESLNSSLENLLQEKEQE 116 (140)
T ss_pred HHHHHHHHHHHHH-HHHhHHHHHHHHHHHHH
Confidence 5555555555555 44444445555555543
No 89
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=97.03 E-value=0.12 Score=49.57 Aligned_cols=120 Identities=18% Similarity=0.170 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 220 WKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKM 299 (640)
Q Consensus 220 wkrky~~L~~QAKkAeek~a~L~er~~~~~q~r~~a~ree~~s~le~kE~kie~~k~ei~~aEq~la~~q~eL~e~e~kI 299 (640)
|++++-...++-|+++....+++.++. .++.. .+......+.....-+..+.++......+..+...++.+...+
T Consensus 1 de~K~l~v~~kLK~~~~e~dsle~~v~-~LEre----Le~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL 75 (140)
T PF10473_consen 1 DEEKFLHVEEKLKESESEKDSLEDHVE-SLERE----LEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELEL 75 (140)
T ss_pred CcHHHHHHHHHHHHHHHhHhhHHHHHH-HHHHH----HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777778888888888888877775 66666 3333333333333444555555555555555555555555555
Q ss_pred hhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 300 RSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYL 344 (640)
Q Consensus 300 k~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L 344 (640)
..+..+...+...+.....+...+.+-..++..-+..+.++...+
T Consensus 76 ~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ek~q~ 120 (140)
T PF10473_consen 76 DTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQEKVQL 120 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555554444445555555555544444
No 90
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.01 E-value=1.6 Score=53.97 Aligned_cols=30 Identities=17% Similarity=0.172 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHhhHHHHHhhHHHHHHHHHH
Q 006565 289 RLELKAAESKMRSYEVEISSQKLETKELSE 318 (640)
Q Consensus 289 q~eL~e~e~kIk~~e~ei~~le~el~~L~e 318 (640)
...+.++.+.|..+++....+..++.-+.+
T Consensus 622 ~e~~~~l~~~i~sL~~~~~~~~~~l~k~~e 651 (1317)
T KOG0612|consen 622 SEIIAELKEEISSLEETLKAGKKELLKVEE 651 (1317)
T ss_pred HHHHHHHHhHHHHHHHHHHhhhhHHHHHHH
Confidence 344455555555555555555555554444
No 91
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=97.01 E-value=0.00097 Score=78.58 Aligned_cols=14 Identities=14% Similarity=0.273 Sum_probs=4.5
Q ss_pred HHHHHHHhhhchHH
Q 006565 56 LATFLQQSSEGPIL 69 (640)
Q Consensus 56 ~~~~L~~~l~~~~~ 69 (640)
+..|.+..|..+|.
T Consensus 79 i~~yy~e~L~~~i~ 92 (713)
T PF05622_consen 79 IKSYYQEELGQQIS 92 (713)
T ss_dssp HHHHHHTTT-----
T ss_pred HHHHHHHHcCCCcC
Confidence 34455555555553
No 92
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=97.00 E-value=1.2 Score=52.15 Aligned_cols=89 Identities=20% Similarity=0.253 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 265 AEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYL 344 (640)
Q Consensus 265 e~kE~kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L 344 (640)
...+.+++.+..++...++.+..+..++...-.. ...+..-.+|-+...+....+.+|...-.+.+.|..+|+.+
T Consensus 450 k~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~-----~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l 524 (594)
T PF05667_consen 450 KELREEIKEIEEEIRQKEELYKQLVKELEKLPKD-----VNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSL 524 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-----CCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444433222221 23455667777777788888888888888888888888888
Q ss_pred HHHHHHHHHHHHHH
Q 006565 345 EQKYKSEFERFEEV 358 (640)
Q Consensus 345 ~ekl~se~er~ee~ 358 (640)
+.++.--+-..++.
T Consensus 525 ~gkL~RtF~v~dEl 538 (594)
T PF05667_consen 525 TGKLDRTFTVTDEL 538 (594)
T ss_pred HHHHHhHHHHHHHH
Confidence 77776666544443
No 93
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=96.97 E-value=1.3 Score=55.24 Aligned_cols=101 Identities=13% Similarity=0.154 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 407 VQRQIESLERQKTDLTNEVNRIRESELEALSK-VALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAA 485 (640)
Q Consensus 407 l~~qIE~lEre~e~Le~E~~~l~~sEl~al~k-v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~l~e~ 485 (640)
+..+++.++.++..|+..+...|..+-+..-. .............-+... -..|.++...+....+.+..+..+..++
T Consensus 213 ~~~~~~~l~~~~~~Lq~~in~kR~~~se~~~~~~~~~~~~~~~~~~~i~~~-~~~N~~Ls~~L~~~t~~~n~l~~~~~~~ 291 (1109)
T PRK10929 213 AKKRSQQLDAYLQALRNQLNSQRQREAERALESTELLAEQSGDLPKSIVAQ-FKINRELSQALNQQAQRMDLIASQQRQA 291 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccCChHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666655222222111 111101111111123333 3446666777777777777766666666
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHH
Q 006565 486 NAMAERLSLEVQSAQAKLDEMQQ 508 (640)
Q Consensus 486 nrrleal~~e~~~lqs~id~Leg 508 (640)
...++.....+..++.++..+.|
T Consensus 292 ~~~l~~~~q~~~~i~eQi~~l~~ 314 (1109)
T PRK10929 292 ASQTLQVRQALNTLREQSQWLGV 314 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 66666666666666666666554
No 94
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.93 E-value=0.29 Score=50.82 Aligned_cols=20 Identities=10% Similarity=0.117 Sum_probs=8.8
Q ss_pred cCcchHHhhhhccCCccCCCCCc
Q 006565 548 MDTNDKVLRANKRSRSTTSPLKY 570 (640)
Q Consensus 548 ~~~~~~~~r~~kr~~~t~~~~~~ 570 (640)
|-+++-..-.-.+ ..++..|
T Consensus 205 m~l~~~~~~~V~~---~d~iv~C 224 (239)
T COG1579 205 MKLPSQTLSKVRK---KDEIVFC 224 (239)
T ss_pred eeecHHHHHHHhc---CCCCccC
Confidence 5564443332222 4455555
No 95
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=96.93 E-value=0.92 Score=49.87 Aligned_cols=95 Identities=13% Similarity=0.146 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 264 LAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVY 343 (640)
Q Consensus 264 le~kE~kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~ 343 (640)
++.+.+.+..++.+++.++.......-+-+..-+++...-.+.+..+.++..+..++.++...+....++...|..++..
T Consensus 76 lddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~ 155 (499)
T COG4372 76 LDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKT 155 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555555554444445555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHH
Q 006565 344 LEQKYKSEFERFEEV 358 (640)
Q Consensus 344 L~ekl~se~er~ee~ 358 (640)
|..++........++
T Consensus 156 l~~qr~ql~aq~qsl 170 (499)
T COG4372 156 LAEQRRQLEAQAQSL 170 (499)
T ss_pred HHHHHHHHHHHHHHH
Confidence 544444444443333
No 96
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=96.92 E-value=1.3 Score=51.42 Aligned_cols=85 Identities=15% Similarity=0.250 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 006565 327 AQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIER 406 (640)
Q Consensus 327 ies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~areead~aq~E~~elQr~~~qrlaeIer 406 (640)
...+.+++..+......+...+..-..-|-.+..++.+..+.+..+.+........+..++++-..+...+......|..
T Consensus 346 ~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ 425 (560)
T PF06160_consen 346 VRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLRE 425 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555556666666666666666666666555555555555555555444444444
Q ss_pred HHHHH
Q 006565 407 VQRQI 411 (640)
Q Consensus 407 l~~qI 411 (640)
+.+.+
T Consensus 426 ikR~l 430 (560)
T PF06160_consen 426 IKRRL 430 (560)
T ss_pred HHHHH
Confidence 44433
No 97
>PRK09039 hypothetical protein; Validated
Probab=96.88 E-value=0.29 Score=53.31 Aligned_cols=13 Identities=15% Similarity=0.074 Sum_probs=6.9
Q ss_pred HHHHHHhcCchhh
Q 006565 604 LKQELTKHNFGAE 616 (640)
Q Consensus 604 l~~el~~~~~g~~ 616 (640)
.+..|..+|+...
T Consensus 296 V~~~Li~~Gi~~~ 308 (343)
T PRK09039 296 VVKFLIALGVPAD 308 (343)
T ss_pred HHHHHHHCCCCHH
Confidence 3455666665443
No 98
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=96.87 E-value=2.2 Score=53.40 Aligned_cols=82 Identities=18% Similarity=0.174 Sum_probs=54.5
Q ss_pred hhhHHHHHHHHHHhhhhc--ccCCchHH--HHHHHHHHhhhchHHHHHHHHH--hHHHhHHHHHHhhhcCchhHHHHHHH
Q 006565 29 IDNVVKVLDGLISEYETS--CHGPGKWQ--KLATFLQQSSEGPILDLVKRLI--DQIGSERSSLMLKYRSIEDNMKLLKK 102 (640)
Q Consensus 29 ~~~~~~~l~~~l~~y~~s--~~G~g~~~--k~~~~L~~~l~~~~~d~~~~~~--~~i~~~~~~l~~~c~s~~~k~~~~~k 102 (640)
|+.|..+|+.+=.+++.+ =.||+.|. -|.+|+..++.-+=+-+|-+-| ++-..--++|.....|..+++..+-+
T Consensus 633 ~~~~~~~le~l~~eie~~rk~l~~lq~~s~~Y~k~Ie~~~~~~~CplC~r~f~~eee~ef~~~l~~~i~s~p~~~~~~~~ 712 (1294)
T KOG0962|consen 633 IDEYLDLLERLKGEIEKARKDLAMLQGRSALYRKFIEIACRSHCCPLCQRSFTTEEEVEFIKKLESKIDSAPDKLEEAEV 712 (1294)
T ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCCCccCCccchHHHHHHHHHHHHHHhccchhHHHHHH
Confidence 445555555555555543 35677777 9999999998766666666655 23344445566666777788888888
Q ss_pred HHHhhHHh
Q 006565 103 QLEDSERY 110 (640)
Q Consensus 103 ~le~~~k~ 110 (640)
.|....+.
T Consensus 713 ~l~k~~k~ 720 (1294)
T KOG0962|consen 713 ELSKEEKI 720 (1294)
T ss_pred HHHHHHHH
Confidence 87777766
No 99
>PRK09039 hypothetical protein; Validated
Probab=96.87 E-value=0.32 Score=53.02 Aligned_cols=9 Identities=33% Similarity=0.501 Sum_probs=5.8
Q ss_pred HHhcCchhh
Q 006565 608 LTKHNFGAE 616 (640)
Q Consensus 608 l~~~~~g~~ 616 (640)
|+-.|||..
T Consensus 310 i~~~G~G~~ 318 (343)
T PRK09039 310 LAAAGFGEF 318 (343)
T ss_pred eEEEEeCCc
Confidence 455677765
No 100
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.80 E-value=0.71 Score=48.02 Aligned_cols=9 Identities=33% Similarity=0.449 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 006565 496 VQSAQAKLD 504 (640)
Q Consensus 496 ~~~lqs~id 504 (640)
...+.+.++
T Consensus 165 ~~~L~~~l~ 173 (239)
T COG1579 165 REELKEKLD 173 (239)
T ss_pred HHHHHHhcC
Confidence 334444443
No 101
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=96.80 E-value=1.8 Score=51.41 Aligned_cols=71 Identities=13% Similarity=0.095 Sum_probs=58.2
Q ss_pred HHHHhHhhHhhHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 172 DQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQ 242 (640)
Q Consensus 172 e~~~~~~k~~~~~~AAGIsklK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a~L~ 242 (640)
|..+.+--.-+..|...|..++.-.+.+..-++.+....+|..-+..+.+.....++.|.+.-.+.+..++
T Consensus 19 e~Ll~esa~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K 89 (717)
T PF09730_consen 19 ESLLQESASKEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYK 89 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666677788889999999999999999999999999999999999999999988887775444433
No 102
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=96.79 E-value=0.7 Score=49.64 Aligned_cols=189 Identities=19% Similarity=0.240 Sum_probs=125.4
Q ss_pred HHhhhH-HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH-----------------------
Q 006565 184 QVCSEI-EVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYG----VAVREAKAAL----------------------- 235 (640)
Q Consensus 184 ~~AAGI-sklK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~----~L~~QAKkAe----------------------- 235 (640)
.+||.| -.+-.+-..+..+...+.++|..+.+.+...+..+. -|..-....+
T Consensus 79 elaA~iGqsLl~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL~~kdeLL~~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~ 158 (306)
T PF04849_consen 79 ELAARIGQSLLEQNQDLSERNEALEEQLGAALEQVEQLRHELSMKDELLQIYSNDDEESEPESSESTPLRRNESSLSSQK 158 (306)
T ss_pred HHHHHHhHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccccCCCcccccccccccccc
Confidence 467888 445566666777888888888777777766655432 2221111111
Q ss_pred -HHHHHHHHhhhHHHhhhHHHHHHHHhH---HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHh
Q 006565 236 -EKAAIVQERTSKEMQQREDVLREEFSS---TLAEKEEEMKE----KATKIEHAEQCLTTLRLELKAAESKMRSYEVEIS 307 (640)
Q Consensus 236 -ek~a~L~er~~~~~q~r~~a~ree~~s---~le~kE~kie~----~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~ 307 (640)
-.+..|+.++ +.++..-..||.++.. +....|.+... -..++..+-.+++.++.+|.........+..+|.
T Consensus 159 ~~~le~Lq~Kl-k~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt 237 (306)
T PF04849_consen 159 CIQLEALQEKL-KSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEIT 237 (306)
T ss_pred chhHHHHHHHH-HHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2234466666 3555554444444332 22233323222 3456777777888888888888888888888888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 308 SQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKAT 373 (640)
Q Consensus 308 ~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~kea~ 373 (640)
.+-.++-.|..+......+-+.+...+...+..=..|...+.....+|.+...-|.+++++++..+
T Consensus 238 ~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~lR 303 (306)
T PF04849_consen 238 SLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKTLR 303 (306)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 888888888888888888888888888888877778888888888888888888887777766554
No 103
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.75 E-value=1.8 Score=50.78 Aligned_cols=31 Identities=32% Similarity=0.261 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 006565 476 ESERRSRAAANAMAERLSLEVQSAQAKLDEM 506 (640)
Q Consensus 476 e~~re~l~e~nrrleal~~e~~~lqs~id~L 506 (640)
+..+..|.+....+++++-+-+-++..|..+
T Consensus 282 E~~~~ELq~~qe~Lea~~qqNqqL~~qls~~ 312 (617)
T PF15070_consen 282 EMAHQELQEAQEHLEALSQQNQQLQAQLSLM 312 (617)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhh
Confidence 4455666666777777777777777777764
No 104
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=96.72 E-value=0.78 Score=46.13 Aligned_cols=63 Identities=21% Similarity=0.321 Sum_probs=29.6
Q ss_pred HHHHHHHHHhHHHHhhhcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 006565 412 ESLERQKTDLTNEVNRIRESELEALSK-VALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLE 476 (640)
Q Consensus 412 E~lEre~e~Le~E~~~l~~sEl~al~k-v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le 476 (640)
+.+.++...|......|. ..+-.++. +..-++.+.++...++.| ..-+++.....+.|..++.
T Consensus 119 ~~lk~~~~eL~~~~~~Lq-~Ql~~~e~l~~~~da~l~e~t~~i~eL-~~~ieEy~~~teeLR~e~s 182 (193)
T PF14662_consen 119 DGLKKRSKELATEKATLQ-RQLCEFESLICQRDAILSERTQQIEEL-KKTIEEYRSITEELRLEKS 182 (193)
T ss_pred hhHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444 44444555 555555555555555555 4444444444444444333
No 105
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.71 E-value=2.1 Score=50.93 Aligned_cols=100 Identities=15% Similarity=0.127 Sum_probs=53.7
Q ss_pred HhHHH--HHhhHHHHHHHHhHHhhhcchHHhHHhhHHhHHhhhhhhHHHHHHHHHHHhHhhHhhHHHhhhHHHHhhhhHH
Q 006565 121 AINDK--KKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTA 198 (640)
Q Consensus 121 ~i~d~--kk~~~~~~~~~~~l~~k~~s~ee~~~~l~k~le~~~~e~~ew~~kYe~~~~~~k~~~~~~AAGIsklK~Rkke 198 (640)
-+.|+ +++.......++.+-..-.-.|+.-....|.++..-. .+.+||.=..+
T Consensus 614 ~~lD~~f~kL~kele~~i~k~ls~~~eee~~~~~~~k~~e~l~~-------------------------~~~kyK~lI~~ 668 (970)
T KOG0946|consen 614 LALDFEFKKLFKELEGLIAKLLSSKTEEEEQTQLAEKYHEELDD-------------------------IQQKYKGLIRE 668 (970)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHHHHHHH-------------------------HHHHHHHHHHH
Confidence 34555 7788888888877766655555544433333332221 12334444445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006565 199 AEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERT 245 (640)
Q Consensus 199 ae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a~L~er~ 245 (640)
.....++++++..+.+-+..+.+.+|.....+.-+-.+++.-|+.+.
T Consensus 669 lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qL 715 (970)
T KOG0946|consen 669 LDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQL 715 (970)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555555555555555555555555555555555555555444444
No 106
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.68 E-value=1.8 Score=49.74 Aligned_cols=192 Identities=18% Similarity=0.209 Sum_probs=107.7
Q ss_pred cCCCCcchh-hHHHHHHHH-------HHhhhhcccCCchHHHHHHHHHHhhhchHHHHHHHHHhHHHhHHHHHHhhhcCc
Q 006565 22 CHSSDASID-NVVKVLDGL-------ISEYETSCHGPGKWQKLATFLQQSSEGPILDLVKRLIDQIGSERSSLMLKYRSI 93 (640)
Q Consensus 22 c~~~~a~~~-~~~~~l~~~-------l~~y~~s~~G~g~~~k~~~~L~~~l~~~~~d~~~~~~~~i~~~~~~l~~~c~s~ 93 (640)
|-.| ++|+ .|+.+|-.+ ++ |-.++.||-.|.++-+.|+=-+ .+|+.=.++-...-+--.-+
T Consensus 120 y~f~-~r~EeEV~~ilK~L~YPf~~siS-s~~a~gspH~WP~iL~mlhWlv---------dlI~~~t~~v~~~~l~q~~~ 188 (581)
T KOG0995|consen 120 YEFP-ERIEEEVVQILKNLKYPFLLSIS-SLQAAGSPHNWPHILGMLHWLV---------DLIRINTALVEDSPLEQEEA 188 (581)
T ss_pred cccc-hhHHHHHHHHHHhCCCCcccchh-hhccCCCCCccHHHHHHHHHHH---------HHHHHhHHHhhccchhccch
Confidence 3344 5554 577777653 45 7788999999998888776443 33322222222222211222
Q ss_pred hhHHHHHHHHH-HhhH-HhHHHHHH--HhhHHhHHH----HHhhHHHHHHHHhHHhhhcchHHhHHhhHHhHHhhhhhhH
Q 006565 94 EDNMKLLKKQL-EDSE-RYKSEYLK--RYDDAINDK----KKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEIS 165 (640)
Q Consensus 94 ~~k~~~~~k~l-e~~~-k~~~~~~k--~~e~~i~d~----kk~~~~~~~~~~~l~~k~~s~ee~~~~l~k~le~~~~e~~ 165 (640)
+++.-+ |.+ |-.- .+..|+.- .|..+-.++ .+.-..+..++.+|....+.|++.+....+ . ..+.+.
T Consensus 189 ed~~m~--k~f~dy~~~~Y~~fl~g~d~~~~~~~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ek-~-~~~~es- 263 (581)
T KOG0995|consen 189 EDKTMN--KLFFDYTIRSYTSFLKGEDNSSELEDELKHRLEKYFTSIANEIEDLKKTNRELEEMINEREK-D-PGKEES- 263 (581)
T ss_pred HHHHHH--HHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C-cchHHH-
Confidence 222222 222 1111 11111110 022333333 344445667888999999999998883322 1 111111
Q ss_pred HHHHHHHHHHhHhhHhhHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 166 DWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAA 234 (640)
Q Consensus 166 ew~~kYe~~~~~~k~~~~~~AAGIsklK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkA 234 (640)
-+++|...=+ +...|-+=++-|+.++-.-+..|......+..+..++.=++.+-+.|.+|...-
T Consensus 264 -lre~~~~L~~----D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q 327 (581)
T KOG0995|consen 264 -LREKKARLQD----DVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQ 327 (581)
T ss_pred -HHHHHHHHHh----HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2233332222 222345566677789999999999999999999999999988888888866543
No 107
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.66 E-value=2.3 Score=50.68 Aligned_cols=100 Identities=14% Similarity=0.142 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 274 KATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFE 353 (640)
Q Consensus 274 ~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~e 353 (640)
...+...+++++..++.+++.....|+.+..++..++.+...-+.-..-...+-.++..++...+++.+++.-.++...+
T Consensus 846 la~e~~~ieq~ls~l~~~~k~~~nli~~ltEk~~sl~~qadse~l~ka~~~~k~~nl~lki~s~kqeqee~~v~~~~~~~ 925 (970)
T KOG0946|consen 846 LANELKLIEQKLSNLQEKIKFGNNLIKELTEKISSLEAQADSETLSKALKTVKSENLSLKIVSNKQEQEELLVLLADQKE 925 (970)
T ss_pred hhhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHhhcchHHHHHHHHhhcccchhcccchhhhHHHHHHHHhhHHH
Confidence 34444455555555555555555555555555555544444333333333444455555666666666666555556566
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 006565 354 RFEEVQERCKVAEKEAKKAT 373 (640)
Q Consensus 354 r~ee~~~rleeaEee~kea~ 373 (640)
++..+.+.+..++..+.+..
T Consensus 926 ~i~alk~~l~dL~q~~eeie 945 (970)
T KOG0946|consen 926 KIQALKEALEDLNQPVEEIE 945 (970)
T ss_pred HHHHHHHHHHHhCCChhhHH
Confidence 66666666665555544433
No 108
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=2.4 Score=50.20 Aligned_cols=136 Identities=20% Similarity=0.314 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHH-HHHHHHHHHHHHHH
Q 006565 374 ELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSK-VALLEARVEEREKE 452 (640)
Q Consensus 374 e~~~~areead~aq~E~~elQr~~~qrlaeIerl~~qIE~lEre~e~Le~E~~~l~~sEl~al~k-v~~lE~~vee~e~e 452 (640)
.....+......++.+...+...+.+..+...-+...|..++-+...|+.....+. .|+-.+.- +..+...+.+....
T Consensus 489 ~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~-~el~~~~~~le~~kk~~~e~~~~ 567 (698)
T KOG0978|consen 489 SERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLI-KELTTLTQSLEMLKKKAQEAKQS 567 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444455555555555555555555555555555555555555555555 44444433 44444444444444
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhcccc
Q 006565 453 IESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQELTKARLNET 518 (640)
Q Consensus 453 iE~L~~~~~eq~~~~l~~le~~le~~re~l~e~nrrleal~~e~~~lqs~id~Leg~~~~~~~~et 518 (640)
.+.| +..+...+..++.+...+++....++..+....-++..+.-+.+-+.-++..+.
T Consensus 568 ~~~L--------q~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~~~ 625 (698)
T KOG0978|consen 568 LEDL--------QIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKKEES 625 (698)
T ss_pred HHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 4444 444444444444455555555555555555555555555555555544444444
No 109
>PRK11281 hypothetical protein; Provisional
Probab=96.52 E-value=3.7 Score=51.36 Aligned_cols=118 Identities=14% Similarity=0.117 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHH-----------HHHHHHhHHHH
Q 006565 197 TAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQRED-----------VLREEFSSTLA 265 (640)
Q Consensus 197 keae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a~L~er~~~~~q~r~~-----------a~ree~~s~le 265 (640)
.+++.+|..+..+|..++..+.++..++-.+..+-.+|+........++. +...++. +.+..+.++..
T Consensus 124 ~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~Rlq-eI~~~L~~~~~~~~~l~~~~~~~l~ae~~ 202 (1113)
T PRK11281 124 RQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQ-QIRNLLKGGKVGGKALRPSQRVLLQAEQA 202 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH-HHHHHHhCCCCCCCcCCHHHHHHHHHHHH
Confidence 56888889999999999999999999999999999998877777666664 5555542 22455555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHH
Q 006565 266 EKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKE 315 (640)
Q Consensus 266 ~kE~kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~ 315 (640)
-++.++.-...++........-.+........++...+..+..+++.+..
T Consensus 203 ~l~~~~~~~~~~l~~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~ 252 (1113)
T PRK11281 203 LLNAQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAINS 252 (1113)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555544444444555555555566666666665555544
No 110
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=96.52 E-value=0.75 Score=54.74 Aligned_cols=36 Identities=14% Similarity=0.119 Sum_probs=30.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 257 REEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLEL 292 (640)
Q Consensus 257 ree~~s~le~kE~kie~~k~ei~~aEq~la~~q~eL 292 (640)
.+....+.+|++..+..++.++..+|.++...+..-
T Consensus 189 ~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~ 224 (754)
T TIGR01005 189 SESNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQS 224 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 667778899999999999999999999998887653
No 111
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.50 E-value=2.8 Score=49.76 Aligned_cols=74 Identities=11% Similarity=0.104 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 006565 327 AQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMER 400 (640)
Q Consensus 327 ies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~areead~aq~E~~elQr~~~qr 400 (640)
+--+......|..++.-|..++..+.+++.-+.-++-.+..++...+..++....+++..+.+..++|.....+
T Consensus 432 iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l 505 (1118)
T KOG1029|consen 432 IVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKL 505 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333344444444444444444455555555566666777777788888888888888888888877666443
No 112
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=96.47 E-value=4 Score=51.21 Aligned_cols=189 Identities=17% Similarity=0.141 Sum_probs=99.6
Q ss_pred hHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHhhhhcccC-CchHHHHHHHHHHhhhchHHHHHHHHHhHHHhHHHHH
Q 006565 8 SSAIQSMERKLRAACHSSDASIDNVVKVLDGLISEYETSCHG-PGKWQKLATFLQQSSEGPILDLVKRLIDQIGSERSSL 86 (640)
Q Consensus 8 ~~~~~~me~~l~~ac~~~~a~~~~~~~~l~~~l~~y~~s~~G-~g~~~k~~~~L~~~l~~~~~d~~~~~~~~i~~~~~~l 86 (640)
++-|+.|+++++++ ...+.++.-...-|+.++.- ...-.+...|.-.++-|.|.+|- +.+.+.+
T Consensus 580 ~~~~~~~~ek~~~l--------~~~~~~~e~~~~~~~~~~e~~~~e~~k~~~~~lk~~sgt~~~~~----~~le~l~--- 644 (1294)
T KOG0962|consen 580 SKEIQEMEERLRML--------QLEEQSLEINRNGIRKDLEDRKEEELKSKEFFLKDESGTIDEYL----DLLERLK--- 644 (1294)
T ss_pred HHHHHHHHHHHHHH--------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhccchhhHH----HHHHHHH---
Confidence 57789999999874 56788888888888888874 22222444444444445554442 2222222
Q ss_pred HhhhcCchhHHHHHHHHHHhhHHhHHHHHHHhhHHhHHH-H------HhhHHHHHHHHhHHhhhcchHHhHHhhHHhHHh
Q 006565 87 MLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDK-K------KLADDYTSRINNLQGENISLREKSSSLSKTVDS 159 (640)
Q Consensus 87 ~~~c~s~~~k~~~~~k~le~~~k~~~~~~k~~e~~i~d~-k------k~~~~~~~~~~~l~~k~~s~ee~~~~l~k~le~ 159 (640)
..++.-.+.|-.+..-..||.+-.+-+..+. + .-.+....-+..|..+..|.=+....+.+.|..
T Consensus 645 --------~eie~~rk~l~~lq~~s~~Y~k~Ie~~~~~~~CplC~r~f~~eee~ef~~~l~~~i~s~p~~~~~~~~~l~k 716 (1294)
T KOG0962|consen 645 --------GEIEKARKDLAMLQGRSALYRKFIEIACRSHCCPLCQRSFTTEEEVEFIKKLESKIDSAPDKLEEAEVELSK 716 (1294)
T ss_pred --------HHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCCCccCCccchHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence 2555566677777777788888777655544 2 222333333333444443333333333333322
Q ss_pred hhhhhHHHHHHHHHHHhHhhHhhHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 160 LKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVRE 230 (640)
Q Consensus 160 ~~~e~~ew~~kYe~~~~~~k~~~~~~AAGIsklK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~Q 230 (640)
.. +.|+..+- .+.. +..-|-....+-.++...|.-+..++....-...+...-++++...
T Consensus 717 ~~-------k~~e~l~~-~~~~---~~~~~~l~~~~i~e~~~~l~~~~~el~~~~~~~e~~~~~l~~~~~~ 776 (1294)
T KOG0962|consen 717 EE-------KIFEILLK-LKPT---FGSIIKLIDKEIPELEKELQEVYEELGDLSEEEEDDEKLLDTIDAA 776 (1294)
T ss_pred HH-------HHHHHHHh-hhhH---HHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhHHHHHhcccchh
Confidence 22 22333222 2211 1112222334556666666666666666666666666666555443
No 113
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=96.47 E-value=0.42 Score=53.85 Aligned_cols=34 Identities=26% Similarity=0.336 Sum_probs=26.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 257 REEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRL 290 (640)
Q Consensus 257 ree~~s~le~kE~kie~~k~ei~~aEq~la~~q~ 290 (640)
+.......+|++.++..++.++..++..+...+.
T Consensus 156 ~~~~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~ 189 (498)
T TIGR03007 156 RQDSDSAQRFIDEQIKTYEKKLEAAENRLKAFKQ 189 (498)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556667888888888888888888888887754
No 114
>PF13514 AAA_27: AAA domain
Probab=96.43 E-value=4.1 Score=50.90 Aligned_cols=134 Identities=19% Similarity=0.351 Sum_probs=73.6
Q ss_pred HHHHHhHHHhHHHHHHhhhcCchhHHHHHHHHHHhhH----------------HhHHHHHH---------HhhHHhHHHH
Q 006565 72 VKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSE----------------RYKSEYLK---------RYDDAINDKK 126 (640)
Q Consensus 72 ~~~~~~~i~~~~~~l~~~c~s~~~k~~~~~k~le~~~----------------k~~~~~~k---------~~e~~i~d~k 126 (640)
.+..+..+......++-.|.....-+..+.-+++.+. .=-.-|+- .||.+|..--
T Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~t~~~l~~aR~~Rd~~W~~~~~~~~~~~~fe~a~~~aD 536 (1111)
T PF13514_consen 457 FRAEFEELERQLRRARDRLEELEEELARLEARLRRLAAAGDVPTEEELAAARARRDAAWQLAALDAALAEAFEAAVREAD 536 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCCccccHHHHHHHHHHHH
Confidence 3445577777777777777777777777766666665 11112333 4666665544
Q ss_pred HhhHH------HHHHHHhHHhhhcchHHhHHhhHHhHHhhhh-----------------------hhHHHHHHHHHHHhH
Q 006565 127 KLADD------YTSRINNLQGENISLREKSSSLSKTVDSLKN-----------------------EISDWKRKYDQVLTK 177 (640)
Q Consensus 127 k~~~~------~~~~~~~l~~k~~s~ee~~~~l~k~le~~~~-----------------------e~~ew~~kYe~~~~~ 177 (640)
.++|. -.+++..++.....+.-++..+...++.+.. +..+|..+++.++..
T Consensus 537 ~laD~~~~~a~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~g~p~~p~~~~~Wl~~~~~~~~~ 616 (1111)
T PF13514_consen 537 ELADRRLREAERAARLAQLRARLEEARARLARAQARLAAAEAALAALEAAWAALWAAAGLPLSPAEMRDWLARREAALEA 616 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Confidence 44443 2344555555554444444444444444333 345688888887775
Q ss_pred hhHhhHHHhhhHHHHhhhhHHHHHHHHHH
Q 006565 178 QKAMEDQVCSEIEVLKSRSTAAEARLAAA 206 (640)
Q Consensus 178 ~k~~~~~~AAGIsklK~Rkkeae~RL~at 206 (640)
...... ..+.+..+..+...+...|...
T Consensus 617 ~~~~~~-~~~~~~~~~~~~~~~~~~L~~~ 644 (1111)
T PF13514_consen 617 AEELRA-ARAELEALRARRAAARAALAAA 644 (1111)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 543333 4455555555555555555544
No 115
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=96.39 E-value=4.9 Score=51.38 Aligned_cols=13 Identities=8% Similarity=0.041 Sum_probs=4.9
Q ss_pred HHHHHHHHHHhhH
Q 006565 96 NMKLLKKQLEDSE 108 (640)
Q Consensus 96 k~~~~~k~le~~~ 108 (640)
+++.+.+-++++.
T Consensus 238 ~le~l~~~~~~l~ 250 (1353)
T TIGR02680 238 ELERLEALERALR 250 (1353)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 116
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=96.37 E-value=2.2 Score=47.07 Aligned_cols=120 Identities=16% Similarity=0.172 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 006565 200 EARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIE 279 (640)
Q Consensus 200 e~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a~L~er~~~~~q~r~~a~ree~~s~le~kE~kie~~k~ei~ 279 (640)
++=|=-...+|-+-==.+.++..+++.+..+.+.|.......+..-+ .-..+++....+-.
T Consensus 59 Lailf~~~~~lr~gVfqlddi~~qlr~~rtel~~a~~~k~~~e~er~-------------------~~~~El~~~r~e~~ 119 (499)
T COG4372 59 LAILFLLNRNLRSGVFQLDDIRPQLRALRTELGTAQGEKRAAETERE-------------------AARSELQKARQERE 119 (499)
T ss_pred HHHHHHhhhhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHH
Confidence 33333444444444444555555555555555555443333332211 11122333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 280 HAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIME 338 (640)
Q Consensus 280 ~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~ 338 (640)
..++++...+..+..+...+......-..+..++..|...+..+..+.+++-..-+.|.
T Consensus 120 ~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ 178 (499)
T COG4372 120 AVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQ 178 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444344444444444444455555555555544444444433333
No 117
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=96.35 E-value=3.6 Score=49.45 Aligned_cols=9 Identities=33% Similarity=0.338 Sum_probs=6.0
Q ss_pred HhHHHHHHH
Q 006565 109 RYKSEYLKR 117 (640)
Q Consensus 109 k~~~~~~k~ 117 (640)
+++.||-.|
T Consensus 234 rLk~FY~~~ 242 (980)
T KOG0980|consen 234 RLKQFYADC 242 (980)
T ss_pred HHHHHHHhc
Confidence 666777665
No 118
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=96.34 E-value=0.2 Score=56.42 Aligned_cols=75 Identities=16% Similarity=0.221 Sum_probs=48.4
Q ss_pred hhhcchHHhHHhhHHhHHhhhhhhHHHHHHHHHHHhHhhHhhHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 141 GENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEW 220 (640)
Q Consensus 141 ~k~~s~ee~~~~l~k~le~~~~e~~ew~~kYe~~~~~~k~~~~~~AAGIsklK~Rkkeae~RL~at~enL~RVkDel~Ew 220 (640)
.-..-++.+...+..+|+.++....+|+.++.-.+.+.. .....++.....++..++..+.+.
T Consensus 161 ~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~~-----------------~~~~~~l~~l~~~l~~~~~~l~~~ 223 (498)
T TIGR03007 161 SAQRFIDEQIKTYEKKLEAAENRLKAFKQENGGILPDQE-----------------GDYYSEISEAQEELEAARLELNEA 223 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCccch-----------------hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567888888889999999999999888754333211 122345566666666666666666
Q ss_pred HHHHHHHHHHHH
Q 006565 221 KRKYGVAVREAK 232 (640)
Q Consensus 221 krky~~L~~QAK 232 (640)
+..++.+..+..
T Consensus 224 ~a~~~~l~~~l~ 235 (498)
T TIGR03007 224 IAQRDALKRQLG 235 (498)
T ss_pred HHHHHHHHHHhc
Confidence 666666665433
No 119
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=96.31 E-value=0.74 Score=43.36 Aligned_cols=51 Identities=20% Similarity=0.186 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 006565 340 DKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGK 390 (640)
Q Consensus 340 ei~~L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~areead~aq~E~ 390 (640)
.-...+.+|+.+...=.+....+..+..++......+..++..++.++...
T Consensus 39 ~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l 89 (132)
T PF07926_consen 39 IAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAEL 89 (132)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333444444444444444444443333
No 120
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=96.26 E-value=1.4 Score=47.81 Aligned_cols=15 Identities=7% Similarity=0.149 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 006565 360 ERCKVAEKEAKKATE 374 (640)
Q Consensus 360 ~rleeaEee~kea~e 374 (640)
..+..++.....+..
T Consensus 165 ~~l~~~~~~l~~~~~ 179 (423)
T TIGR01843 165 AQLQALRQQLEVISE 179 (423)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 121
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=96.19 E-value=4.4 Score=48.76 Aligned_cols=47 Identities=13% Similarity=0.128 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Q 006565 464 RASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQEL 510 (640)
Q Consensus 464 ~~~~l~~le~~le~~re~l~e~nrrleal~~e~~~lqs~id~Leg~~ 510 (640)
+-.++..++.+...+++.|+..|..+..-++-+--+=+++..+|+++
T Consensus 263 l~~~l~~~eeEnk~Lke~l~~k~~ELq~sr~~~a~ta~kL~~~e~ql 309 (769)
T PF05911_consen 263 LTERLQAMEEENKMLKEALAKKNSELQFSRNMYAKTASKLSQLEAQL 309 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37888889999999999999999999999999999999999998888
No 122
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.14 E-value=1.8 Score=43.78 Aligned_cols=29 Identities=17% Similarity=0.235 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 392 EFENLAMERMAVIERVQRQIESLERQKTD 420 (640)
Q Consensus 392 elQr~~~qrlaeIerl~~qIE~lEre~e~ 420 (640)
++++......+.+...+..|..|++.++-
T Consensus 122 eL~~kL~~~~~~l~~~~~ki~~Lek~leL 150 (194)
T PF15619_consen 122 ELQRKLSQLEQKLQEKEKKIQELEKQLEL 150 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444333
No 123
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=96.14 E-value=1.9 Score=44.07 Aligned_cols=89 Identities=16% Similarity=0.249 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 289 RLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKE 368 (640)
Q Consensus 289 q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee 368 (640)
..++..+...-.....++..++.....|..+++..+.-+..|..-=..|+..+..+..++....++|..+... +++.
T Consensus 68 ~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~h---Aeek 144 (207)
T PF05010_consen 68 EAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAH---AEEK 144 (207)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 3444444455555667777777777799999999999999999998999999999988888888888776643 3345
Q ss_pred HHHHHHHHHHHH
Q 006565 369 AKKATELADRER 380 (640)
Q Consensus 369 ~kea~e~~~~ar 380 (640)
+..|.++++..+
T Consensus 145 L~~ANeei~~v~ 156 (207)
T PF05010_consen 145 LEKANEEIAQVR 156 (207)
T ss_pred HHHHHHHHHHHH
Confidence 555555555443
No 124
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=96.12 E-value=2.6 Score=45.46 Aligned_cols=247 Identities=14% Similarity=0.166 Sum_probs=112.3
Q ss_pred HHHhhhcCchhHHHHHHHHHHhhHHhH-------HHHHHHhhHHhHHHHHhhHHHHHHHHhHHhhhcchHHhHHhhHHhH
Q 006565 85 SLMLKYRSIEDNMKLLKKQLEDSERYK-------SEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTV 157 (640)
Q Consensus 85 ~l~~~c~s~~~k~~~~~k~le~~~k~~-------~~~~k~~e~~i~d~kk~~~~~~~~~~~l~~k~~s~ee~~~~l~k~l 157 (640)
.....+.+|++|++.|.+..-.++... ..+++++.....+ .+...++++-...-.+.||.=|--|-++=
T Consensus 12 q~l~~l~~~eeK~~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~ke----k~~l~~E~~k~~~~k~KLE~LCRELQk~N 87 (309)
T PF09728_consen 12 QSLNKLSSPEEKLEALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKE----KDQLQSELSKAILAKSKLESLCRELQKQN 87 (309)
T ss_pred HHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344678899999999988887776322 2333333333333 33334444433333333333333333332
Q ss_pred Hh-----------hhhhhHHHHHHHHHHHhHhhHhhHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 158 DS-----------LKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGV 226 (640)
Q Consensus 158 e~-----------~~~e~~ew~~kYe~~~~~~k~~~~~~AAGIsklK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~ 226 (640)
-. -+....+|..+|..+|++-..--+.....-.++ .++=.+.+.+++.
T Consensus 88 k~lkeE~~~~~~eee~kR~el~~kFq~~L~dIq~~~ee~~~~~~k~---------------------~~eN~~L~eKlK~ 146 (309)
T PF09728_consen 88 KKLKEESKRRAREEEEKRKELSEKFQATLKDIQAQMEEQSERNIKL---------------------REENEELREKLKS 146 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHH---------------------HHHHHHHHHHHHH
Confidence 22 224455677777777775544433333322222 2333344445555
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 006565 227 AVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTL-AEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVE 305 (640)
Q Consensus 227 L~~QAKkAeek~a~L~er~~~~~q~r~~a~ree~~s~l-e~kE~kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~e 305 (640)
+..|-..-+..+..+-... .++.++..++-+-.... ..-.........-+..--..+..+...-.++...+..|..+
T Consensus 147 l~eQye~rE~~~~~~~k~k--eLE~Ql~~AKl~q~~~~~~~e~~k~~~~~~~~l~~~~~~~~~~~~E~~Lr~QL~~Y~~K 224 (309)
T PF09728_consen 147 LIEQYELREEHFEKLLKQK--ELEVQLAEAKLEQQQEEAEQEKEKAKQEKEILLEEAAQVQTLKETEKELREQLNLYSEK 224 (309)
T ss_pred HHHHHHHHHHHHHHHhhHH--HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555444444444432221 22222211111111110 00000111111100000004444444445555555555566
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 306 ISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEV 358 (640)
Q Consensus 306 i~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~ 358 (640)
....+.-|.-.++-+.+...+++...+.+..|+.+...+..+++.....+...
T Consensus 225 f~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m 277 (309)
T PF09728_consen 225 FEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEM 277 (309)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 66666666666666666666666666666666666555544444444433333
No 125
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=96.09 E-value=2.6 Score=45.33 Aligned_cols=24 Identities=13% Similarity=0.148 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 203 LAAAREQALSAQEEVEEWKRKYGV 226 (640)
Q Consensus 203 L~at~enL~RVkDel~Ewkrky~~ 226 (640)
...|-.|.+.|..++.|-+|-+..
T Consensus 57 mtkty~Didavt~lLeEkerDLel 80 (306)
T PF04849_consen 57 MTKTYNDIDAVTRLLEEKERDLEL 80 (306)
T ss_pred hhcchhhHHHHHHHHHHHhhhHHH
Confidence 344666777777777775554433
No 126
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.09 E-value=4.3 Score=47.77 Aligned_cols=113 Identities=12% Similarity=0.204 Sum_probs=81.7
Q ss_pred hHHHhHHHHHHhhhcCchhHHHHHHHHHHhhHHhHHHHHHHhhHHhHHHHHhhHHHHHHHHhHHhhhcchHHhHHhhHHh
Q 006565 77 DQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKT 156 (640)
Q Consensus 77 ~~i~~~~~~l~~~c~s~~~k~~~~~k~le~~~k~~~~~~k~~e~~i~d~kk~~~~~~~~~~~l~~k~~s~ee~~~~l~k~ 156 (640)
.-+-..+.++.-+|..+-.++..+.-+..+..+-...+..-.+..+..+.-+...|.+.++.++-+|--.+++...+|.-
T Consensus 108 ~~l~~~q~a~~~~e~~lq~q~e~~~n~~q~~~~k~~el~~e~~~k~ae~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s~ 187 (716)
T KOG4593|consen 108 TRLRQLQEALKGQEEKLQEQLERNRNQCQANLKKELELLREKEDKLAELGTLRNKLDSSLSELQWEVMLQEMRAKRLHSE 187 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556777777777777777777777777777777777888888888889999999999999988888888777765
Q ss_pred HHhhhhhhHHHHHHHHHHHhHhhHhhHHHhhhHHHHhhhh
Q 006565 157 VDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRS 196 (640)
Q Consensus 157 le~~~~e~~ew~~kYe~~~~~~k~~~~~~AAGIsklK~Rk 196 (640)
|. .+.+.|...+-+-+...-..++.+..+..+.
T Consensus 188 l~-------~~eke~~~~~~ql~~~~q~~~~~~~~l~e~~ 220 (716)
T KOG4593|consen 188 LQ-------NEEKELDRQHKQLQEENQKIQELQASLEERA 220 (716)
T ss_pred HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54 5556666666666666666666666665553
No 127
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=96.06 E-value=6.2 Score=49.35 Aligned_cols=57 Identities=16% Similarity=0.242 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q 006565 399 ERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSK--VALLEARVEEREKEIESL 456 (640)
Q Consensus 399 qrlaeIerl~~qIE~lEre~e~Le~E~~~l~~sEl~al~k--v~~lE~~vee~e~eiE~L 456 (640)
+...+|..++-..-.++++.+.+.. +..+....-..+.. ...+..-++.+++-++.|
T Consensus 337 ~l~~~IAdlRl~~f~~~q~~~~l~~-i~~~~~~~~~~~t~~~~~~l~~ll~~rr~LL~~L 395 (1109)
T PRK10929 337 QLDTEMAQLRVQRLRYEDLLNKQPQ-LRQIRQADGQPLTAEQNRILDAQLRTQRELLNSL 395 (1109)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhh-hHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777777653 44333111112222 445566666777777777
No 128
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=96.01 E-value=4.1 Score=46.77 Aligned_cols=172 Identities=16% Similarity=0.193 Sum_probs=108.2
Q ss_pred HHHHHHhHHhhhcchHHhHHhhHHhHHhhhhhhHHHHHHHHHHHhHhhHhhHHHhhhHHH--HhhhhHHHHHHHHHHHHH
Q 006565 132 YTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEV--LKSRSTAAEARLAAAREQ 209 (640)
Q Consensus 132 ~~~~~~~l~~k~~s~ee~~~~l~k~le~~~~e~~ew~~kYe~~~~~~k~~~~~~AAGIsk--lK~Rkkeae~RL~at~en 209 (640)
+...+........-+.....++.--+++.+.+-.+|+.|.-.++..+-+.-+.+..|... |...... .-|..+...
T Consensus 205 A~~~~~~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~~~~~~~~~~--~el~~l~~E 282 (511)
T PF09787_consen 205 ALRHYIEYLRESGELQEQLELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLEEGFDSSTNS--IELEELKQE 282 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccccccch--hcchhhHHH
Confidence 445677777788888999999999999999999999999888887777665555553321 2211111 348889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 210 ALSAQEEVEEWKRKYGVAVREAKAALEKAAI----VQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCL 285 (640)
Q Consensus 210 L~RVkDel~Ewkrky~~L~~QAKkAeek~a~----L~er~~~~~q~r~~a~ree~~s~le~kE~kie~~k~ei~~aEq~l 285 (640)
.+.+++++..++.++..+..++.-.+.++.. +..... .++.. +...+.. +.++.-...++-+....+
T Consensus 283 ~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~-~~~~~-------~~~~~~~-e~e~~l~~~el~~~~ee~ 353 (511)
T PF09787_consen 283 RDHLQEEIQLLERQIEQLRAELQDLEAQLEGEQESFREQPQ-ELSQQ-------LEPELTT-EAELRLYYQELYHYREEL 353 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHH-------HHHHhch-HHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988777755544 222221 22222 2111211 555555555555555444
Q ss_pred HHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHH
Q 006565 286 TTLRLELKAAESKMRSYEVEISSQKLETKELS 317 (640)
Q Consensus 286 a~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ 317 (640)
.... .....++...++++..+..++....
T Consensus 354 ~~~~---s~~~~k~~~ke~E~q~lr~~l~~~~ 382 (511)
T PF09787_consen 354 SRQK---SPLQLKLKEKESEIQKLRNQLSARA 382 (511)
T ss_pred HHhc---ChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4332 2233344444555555555554433
No 129
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.89 E-value=6.6 Score=48.28 Aligned_cols=114 Identities=17% Similarity=0.216 Sum_probs=76.8
Q ss_pred HHhhHHHHHHHHhHHhhhcchHHhHHhhHHhHHhhhhhhHHHHHHHHHHHhHhhHhhHHHhh--hHHHHhhhhHHHHHHH
Q 006565 126 KKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCS--EIEVLKSRSTAAEARL 203 (640)
Q Consensus 126 kk~~~~~~~~~~~l~~k~~s~ee~~~~l~k~le~~~~e~~ew~~kYe~~~~~~k~~~~~~AA--GIsklK~Rkkeae~RL 203 (640)
.+-++....+++.+...+.++..++..-...+...+++.....+-|-..=-....-+..++. ..-.++......-.||
T Consensus 226 E~~i~k~~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l~erp~li~~ke~~~~~k~rl 305 (1141)
T KOG0018|consen 226 EACIEKANDELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEEKLAERPELIKVKENASHLKKRL 305 (1141)
T ss_pred hhhHhhhhHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhcchhhccchhHH
Confidence 67778888899999999999999999999999999988888877765543333333333333 2223344444444677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 204 AAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAA 239 (640)
Q Consensus 204 ~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a 239 (640)
.....++..+++-...-...|+-+..|-+...-...
T Consensus 306 ~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~ 341 (1141)
T KOG0018|consen 306 EEIEKDIETAKKDYRALKETIERLEKELKAVEGAKE 341 (1141)
T ss_pred HHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777777777766666663333
No 130
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=95.81 E-value=6.4 Score=47.45 Aligned_cols=129 Identities=22% Similarity=0.256 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 287 TLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAE 366 (640)
Q Consensus 287 ~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaE 366 (640)
..+..|.+.+..|..+..++..++..-..+...+.........++.++..++.+...+..++.++...++....-+.++.
T Consensus 621 ~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~ 700 (769)
T PF05911_consen 621 SLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAEAEELQSKISSLEEELEKERALSEELE 700 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhhh
Confidence 33333333333333333333333333333334444444444444444444455555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHH-----------HhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 367 KEAKKATELADRERAEAAAA-----------RKGKSEFENLAMERMAVIERVQRQIESLE 415 (640)
Q Consensus 367 ee~kea~e~~~~areead~a-----------q~E~~elQr~~~qrlaeIerl~~qIE~lE 415 (640)
..|.....+..+...+.... ..|...+-..+.++...|..|..|+..|.
T Consensus 701 ~kc~~Le~el~r~~~~~~~~~~~~~~~k~kqe~EiaaAA~KLAECQeTI~sLGkQLksLa 760 (769)
T PF05911_consen 701 AKCRELEEELERMKKEESLQQLANEDKKIKQEKEIAAAAEKLAECQETIASLGKQLKSLA 760 (769)
T ss_pred hHHHHHHHHHHhhhcccchhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 55555555555544332111 22455555566667666776666665553
No 131
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=95.79 E-value=7.3 Score=47.99 Aligned_cols=153 Identities=11% Similarity=0.138 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 270 EMKEKATKIEHAEQCLTTL---------RLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQD 340 (640)
Q Consensus 270 kie~~k~ei~~aEq~la~~---------q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~e 340 (640)
+|+.+++++.++..+-.++ ..++++....|..++.++..++.+++.+.+.+-....--.-+.++...++..
T Consensus 412 EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~ 491 (1041)
T KOG0243|consen 412 EIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSK 491 (1041)
T ss_pred HHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 5556666666665544433 3355666667777777777777777777776654444333444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 341 KVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTD 420 (640)
Q Consensus 341 i~~L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~areead~aq~E~~elQr~~~qrlaeIerl~~qIE~lEre~e~ 420 (640)
+..-...+.+..+.+......+.. ....++........+......+++..-+....+.-+-..|++..+--..
T Consensus 492 L~~~~~el~~~~ee~~~~~~~l~~-------~e~ii~~~~~se~~l~~~a~~l~~~~~~s~~d~s~l~~kld~~~~~~d~ 564 (1041)
T KOG0243|consen 492 LQNKNKELESLKEELQQAKATLKE-------EEEIISQQEKSEEKLVDRATKLRRSLEESQDDLSSLFEKLDRKDRLDDD 564 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccc
Confidence 444444444444444444444333 3333333333333333333444444433333344343444444443333
Q ss_pred hHHHHhhhc
Q 006565 421 LTNEVNRIR 429 (640)
Q Consensus 421 Le~E~~~l~ 429 (640)
...-+..+.
T Consensus 565 n~~~~~~~~ 573 (1041)
T KOG0243|consen 565 NQEVIDDFQ 573 (1041)
T ss_pred cHHHHHHHh
Confidence 333333333
No 132
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=95.76 E-value=2.6 Score=42.56 Aligned_cols=172 Identities=16% Similarity=0.222 Sum_probs=81.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 308 SQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAAR 387 (640)
Q Consensus 308 ~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~areead~aq 387 (640)
.++..=+.|.+....+...++..+.-...|..++..|...+.+..+-. ...+.++++...++..+....+....+.
T Consensus 12 dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal----~~aK~l~eEledLk~~~~~lEE~~~~L~ 87 (193)
T PF14662_consen 12 DLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQAL----QKAKALEEELEDLKTLAKSLEEENRSLL 87 (193)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444555555555555555555556666666655555543221 2222223333333333333333333333
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 006565 388 KGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSK-VALLEARVEEREKEIESLLESNNEQRAS 466 (640)
Q Consensus 388 ~E~~elQr~~~qrlaeIerl~~qIE~lEre~e~Le~E~~~l~~sEl~al~k-v~~lE~~vee~e~eiE~L~~~~~eq~~~ 466 (640)
.....+.+..-.+.+.|+.++..-..+..+.+.+......|- ++..++.. +=..+.-+-.++..+.+- ....+.+..
T Consensus 88 aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~-~~~~~Lq~Ql~~~e~l~~~~da~l~e~-t~~i~eL~~ 165 (193)
T PF14662_consen 88 AQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELA-TEKATLQRQLCEFESLICQRDAILSER-TQQIEELKK 165 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHH
Confidence 333444444444444555555554555555555555555554 44455554 444555555555555555 455555555
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 006565 467 TVKKLEDLLESERRSRAAA 485 (640)
Q Consensus 467 ~l~~le~~le~~re~l~e~ 485 (640)
.|..+....+.+|..++..
T Consensus 166 ~ieEy~~~teeLR~e~s~L 184 (193)
T PF14662_consen 166 TIEEYRSITEELRLEKSRL 184 (193)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555555444444444433
No 133
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=95.69 E-value=5 Score=46.48 Aligned_cols=44 Identities=11% Similarity=0.012 Sum_probs=25.4
Q ss_pred hhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 187 SEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVRE 230 (640)
Q Consensus 187 AGIsklK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~Q 230 (640)
+|+..+......+..++..+...|...+....++.++++.+..|
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~q 197 (563)
T TIGR00634 154 AGANEKVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQ 197 (563)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34666666666666666666666655555555555555555443
No 134
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=95.66 E-value=1.6 Score=41.05 Aligned_cols=44 Identities=11% Similarity=0.225 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 313 TKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFE 356 (640)
Q Consensus 313 l~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~e 356 (640)
+..|......+...+..+...+..+..++.............|+
T Consensus 5 ~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE 48 (132)
T PF07926_consen 5 LSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYE 48 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444433333333333
No 135
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=95.56 E-value=2.7 Score=41.33 Aligned_cols=131 Identities=21% Similarity=0.213 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 267 KEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSY-EVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLE 345 (640)
Q Consensus 267 kE~kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~-e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ 345 (640)
+++.+...+..+......++.+...|...+.--.++ ..++..++-+-..|..+.+.-+.++..+.......-+-+.|+.
T Consensus 4 k~~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~k 83 (177)
T PF13870_consen 4 KRNEISKLRLKNITLKHQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVK 83 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777777777777777777776666433333 3677778888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 006565 346 QKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLA 397 (640)
Q Consensus 346 ekl~se~er~ee~~~rleeaEee~kea~e~~~~areead~aq~E~~elQr~~ 397 (640)
+++......+......+...+.....++..+..+...-+.++.....++...
T Consensus 84 eKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~ 135 (177)
T PF13870_consen 84 EKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQG 135 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888888888888888888888888888888777777777777777765443
No 136
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=95.55 E-value=6.9 Score=46.07 Aligned_cols=414 Identities=13% Similarity=0.202 Sum_probs=217.6
Q ss_pred HHhhhcCchhHHHHHHHHHHhhHHhHHHHHHHhhHHhHHHHHhhHHHHHHHHhHHhhhcchHHhHHhhHHhHHhhhhhhH
Q 006565 86 LMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEIS 165 (640)
Q Consensus 86 l~~~c~s~~~k~~~~~k~le~~~k~~~~~~k~~e~~i~d~kk~~~~~~~~~~~l~~k~~s~ee~~~~l~k~le~~~~e~~ 165 (640)
....|.-+...-.-|-..|+..-+-...+-.--+..|.++.+.-...+.-.++|+..+.+|.+=+.+=...++
T Consensus 301 ~K~slq~~~~tq~~le~~lq~~~k~~~qlt~eKe~~~Ee~nk~k~~~s~~v~e~qtti~~L~~lL~~Eqqr~~------- 373 (786)
T PF05483_consen 301 IKQSLQESESTQKALEEDLQQATKTLIQLTEEKEAQMEELNKAKAQHSFVVTELQTTICNLKELLTTEQQRLK------- 373 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 3344443333333333344444344444444557888899888888899999999988888764433222221
Q ss_pred HHHHHHHHHHhHhhHhhHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHh
Q 006565 166 DWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAI-VQER 244 (640)
Q Consensus 166 ew~~kYe~~~~~~k~~~~~~AAGIsklK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a~-L~er 244 (640)
+|++-+.-.-..-..-++.+.....-+.-.+-.|.-....|..-.. +.+-+++........+.++..+.- |+.+
T Consensus 374 ----~~ed~lk~l~~eLqkks~eleEmtk~k~~ke~eleeL~~~L~e~qk-ll~ekk~~eki~E~lq~~eqel~~llq~~ 448 (786)
T PF05483_consen 374 ----KNEDQLKILTMELQKKSSELEEMTKQKNNKEVELEELKKILAEKQK-LLDEKKQFEKIAEELQGTEQELTGLLQIR 448 (786)
T ss_pred ----HhHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1333222111111112233322222222233346666777776665 334445677777777777744443 3332
Q ss_pred hh--HHHhhhHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHH
Q 006565 245 TS--KEMQQREDVLR---EEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEK 319 (640)
Q Consensus 245 ~~--~~~q~r~~a~r---ee~~s~le~kE~kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ek 319 (640)
.. ..++..+.++. .....++..+..+++.-+.+-.+.-.....+..+=..+.........+++.....|.....+
T Consensus 449 ekev~dLe~~l~~~~~~eq~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qedi~~~k~q 528 (786)
T PF05483_consen 449 EKEVHDLEIQLTTIKESEQHYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQEDINNSKKQ 528 (786)
T ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 21 13333322222 12222344444444333333233323333333333344444444444555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 320 LEAVNAKAQSFEREARIMEQDKVYLEQKYKSEF------------------ERFEEVQERCKVAEKEAKKATELADRERA 381 (640)
Q Consensus 320 le~~~~eies~e~el~~L~~ei~~L~ekl~se~------------------er~ee~~~rleeaEee~kea~e~~~~are 381 (640)
.+.+...|++++..-..|..++..+...+..-. -.+......++.++..|...+..+.....
T Consensus 529 ee~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq~k~lenk~~~LrKqvEnk~K 608 (786)
T PF05483_consen 529 EEKMLKQIENLEETNTQLRNELESVKEELKQKGEEVKCKLDKSEENARSIECEILKKEKQMKILENKCNNLRKQVENKNK 608 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555555666665555555555554443333222 12222334555666667777777777777
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH----HhhhcHHHHH----------------------H
Q 006565 382 EAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNE----VNRIRESELE----------------------A 435 (640)
Q Consensus 382 ead~aq~E~~elQr~~~qrlaeIerl~~qIE~lEre~e~Le~E----~~~l~~sEl~----------------------a 435 (640)
-....+.+...+.+...---+++..++..|..++-+++++..- .+.+. .+++ |
T Consensus 609 ~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE~~~~~~-keie~K~~~e~~L~~EveK~k~~a~EA 687 (786)
T PF05483_consen 609 NIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHEEETDKYQ-KEIESKSISEEELLGEVEKAKLTADEA 687 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 7777788888887777555555666666666666666555431 22222 2211 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhh
Q 006565 436 LSKVALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQELTK 512 (640)
Q Consensus 436 l~kv~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~l~e~nrrleal~~e~~~lqs~id~Leg~~~~ 512 (640)
+....+.+-++.---.++-.||.++--+.-.-|.....+|...+-.=.++..--.++-+++..++..|+.|..++..
T Consensus 688 vK~q~EtdlrCQhKIAeMVALMEKHK~qYDkiVEEkDaEL~~~k~KE~E~~s~k~sLE~ELs~lk~el~slK~QLk~ 764 (786)
T PF05483_consen 688 VKLQEETDLRCQHKIAEMVALMEKHKHQYDKIVEEKDAELGLYKKKEQEQSSHKASLELELSNLKNELSSLKKQLKT 764 (786)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 11122333333333345566666666666677777777777776666666666677777788888888887666543
No 137
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=95.54 E-value=4.1 Score=44.20 Aligned_cols=216 Identities=18% Similarity=0.183 Sum_probs=122.2
Q ss_pred hhcchHHhHHhhHHhHHhhhhhhHHHHHHHHHHHhHhhHhhHHHhhhH------H----HHhhhhHHHHHHHHHHHHHHH
Q 006565 142 ENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEI------E----VLKSRSTAAEARLAAAREQAL 211 (640)
Q Consensus 142 k~~s~ee~~~~l~k~le~~~~e~~ew~~kYe~~~~~~k~~~~~~AAGI------s----klK~Rkkeae~RL~at~enL~ 211 (640)
||.|=-|-+.-|++.||....|.-.|+..+++.-..+..+...+..=+ . ..-......-.-|..+++.-.
T Consensus 3 KL~SK~eAL~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk 82 (319)
T PF09789_consen 3 KLQSKSEALLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNK 82 (319)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHH
Confidence 566667888999999999999999999999998877666666554333 1 111244555566777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 212 SAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLE 291 (640)
Q Consensus 212 RVkDel~Ewkrky~~L~~QAKkAeek~a~L~er~~~~~q~r~~a~ree~~s~le~kE~kie~~k~ei~~aEq~la~~q~e 291 (640)
+...++.+.+.++..+.-.-|--+.+++....... ....+... .+-+.+..+++.+..++..+..+
T Consensus 83 ~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~-~~~~~~~~-------------~ere~lV~qLEk~~~q~~qLe~d 148 (319)
T PF09789_consen 83 KLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDE-GIGARHFP-------------HEREDLVEQLEKLREQIEQLERD 148 (319)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhc-cccccccc-------------hHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888877777776666666666544432 33222111 13334444444444444444444
Q ss_pred HHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 292 LKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKK 371 (640)
Q Consensus 292 L~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~ke 371 (640)
|.....+......+....+.....|+..+.-+-.--.+-.-.+..|--|...|. +++..++++..-
T Consensus 149 ~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~--------------erl~q~qeE~~l 214 (319)
T PF09789_consen 149 LQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLK--------------ERLKQLQEEKEL 214 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHH--------------HHHHHHHHHHHH
Confidence 444444444444444444444444443332222111111113555555555553 444555555555
Q ss_pred HHHHHHHHHHHHHH
Q 006565 372 ATELADRERAEAAA 385 (640)
Q Consensus 372 a~e~~~~areead~ 385 (640)
+.--+.+++..++.
T Consensus 215 ~k~~i~KYK~~le~ 228 (319)
T PF09789_consen 215 LKQTINKYKSALER 228 (319)
T ss_pred HHHHHHHHHHHHHh
Confidence 55555666665553
No 138
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.54 E-value=4.4 Score=43.74 Aligned_cols=137 Identities=19% Similarity=0.284 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHhhhcHHHHHHHHH-HHHHHHHHHH
Q 006565 373 TELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTN---EVNRIRESELEALSK-VALLEARVEE 448 (640)
Q Consensus 373 ~e~~~~areead~aq~E~~elQr~~~qrlaeIerl~~qIE~lEre~e~Le~---E~~~l~~sEl~al~k-v~~lE~~vee 448 (640)
......+...+...+.+...+.........-+..+......+..++.+|.. +.......++..+.. +......|+.
T Consensus 148 ~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~ 227 (325)
T PF08317_consen 148 EGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEA 227 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHH
Confidence 333333433333344444444333333333333333333444444333332 344455556777777 7777888888
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHh
Q 006565 449 REKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLS----LEVQSAQAKLDEMQQEL 510 (640)
Q Consensus 449 ~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~l~e~nrrleal~----~e~~~lqs~id~Leg~~ 510 (640)
.+.++.++ +.....+...|+.+...+.....+++++.+..+.-+ .++..++..++.||.+.
T Consensus 228 ~k~~l~el-~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~~~ 292 (325)
T PF08317_consen 228 KKKELAEL-QEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDALEKLT 292 (325)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 88888888 888888888888888888888888888887776544 46788888888888774
No 139
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=95.53 E-value=7 Score=46.02 Aligned_cols=299 Identities=17% Similarity=0.221 Sum_probs=152.2
Q ss_pred HhhhhcccCCchHH------HHHHHHHHhhhchHHHHHHHHHhHHHhHHHHHHhhhcCchh----------HHHHHHHHH
Q 006565 41 SEYETSCHGPGKWQ------KLATFLQQSSEGPILDLVKRLIDQIGSERSSLMLKYRSIED----------NMKLLKKQL 104 (640)
Q Consensus 41 ~~y~~s~~G~g~~~------k~~~~L~~~l~~~~~d~~~~~~~~i~~~~~~l~~~c~s~~~----------k~~~~~k~l 104 (640)
+-|+.++...|+.- ..+.|....|-+|..-..- =++-+++-...|.++++ .|.+|..+|
T Consensus 288 s~~eiiin~ng~SsT~e~ser~s~~v~~el~~~~~~~e~-----~es~Rs~s~~n~~~~d~~q~eLdK~~~~i~~Ln~~l 362 (961)
T KOG4673|consen 288 SPYEIIINKNGRSSTDEISERISDFVSRELDSRLDTSEL-----NESQRSSSATNVSDSDDVQLELDKTKKEIKMLNNAL 362 (961)
T ss_pred CcceeecCCCCCccccccccccchHHHHHhccchhhHHh-----hhccCCCCCccccCchhHHHHHHHHHHHHHHHHHHH
Confidence 34555555544432 3445666666666554433 34556666777888887 355666666
Q ss_pred HhhH-------HhHHHHHHHhhHHhH-HHHHh--hHHHHHHHHhHHhhhcchHHhHHhhHHhHHhhhhhhHHHHHHHH--
Q 006565 105 EDSE-------RYKSEYLKRYDDAIN-DKKKL--ADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYD-- 172 (640)
Q Consensus 105 e~~~-------k~~~~~~k~~e~~i~-d~kk~--~~~~~~~~~~l~~k~~s~ee~~~~l~k~le~~~~e~~ew~~kYe-- 172 (640)
++.+ +-+..+---+-.... |+++- +-.+++-..+.--++..+|-++..+.|.-|+++.+.-..++-..
T Consensus 363 eaReaqll~~e~~ka~lee~~~n~~~e~~~~k~~~s~~ssl~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~ 442 (961)
T KOG4673|consen 363 EAREAQLLADEIAKAMLEEEQLNSVTEDLKRKSNESEVSSLREEYHQRVATLEKKVQALTKERDALRREQKSLKKELAAA 442 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 6655 222222221111221 22221 11223333444455566677777777777777777664444333
Q ss_pred ----------HHHhHhhHhhH----H---HhhhHHHHhhhhHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 173 ----------QVLTKQKAMED----Q---VCSEIEVLKSRSTAAE----------ARLAAAREQALSAQEEVEEWKRKYG 225 (640)
Q Consensus 173 ----------~~~~~~k~~~~----~---~AAGIsklK~Rkkeae----------~RL~at~enL~RVkDel~Ewkrky~ 225 (640)
+.|+...+.-+ . -.+-|.+|+.+-++++ .+|.+-.+-|.++.+-=.|+++.+.
T Consensus 443 l~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~ 522 (961)
T KOG4673|consen 443 LLKDELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQ 522 (961)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 33433322222 1 2345677777777766 3444555555555555566776554
Q ss_pred HHHHHH----HHHHHHHHHHHHhhhHHHhhhHHHHHHHHhHHHHH--HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 226 VAVREA----KAALEKAAIVQERTSKEMQQREDVLREEFSSTLAE--KEEEMK--EKATKIEHAEQCLTTLRLELKAAES 297 (640)
Q Consensus 226 ~L~~QA----KkAeek~a~L~er~~~~~q~r~~a~ree~~s~le~--kE~kie--~~k~ei~~aEq~la~~q~eL~e~e~ 297 (640)
...... ++..+.+..+...+. .++.+..|+.+.+..+... |++-++ +++..-...=+....++..|.-++.
T Consensus 523 E~I~k~~ae~~rq~~~~~~sr~~~~-~le~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq 601 (961)
T KOG4673|consen 523 ETIEKHQAELTRQKDYYSNSRALAA-ALEAQALAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQ 601 (961)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443322 222255555666664 6666655555555554332 222222 4444444445555555555544443
Q ss_pred HHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Q 006565 298 KMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREAR----IMEQDKVYLEQKY 348 (640)
Q Consensus 298 kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~----~L~~ei~~L~ekl 348 (640)
..-..+ ..++.+|..|..+|..++-+.+.+..++- -|-..|..|..-+
T Consensus 602 ~aarrE---d~~R~Ei~~LqrRlqaaE~R~eel~q~v~~TTrPLlRQIE~lQ~tl 653 (961)
T KOG4673|consen 602 QAARRE---DMFRGEIEDLQRRLQAAERRCEELIQQVPETTRPLLRQIEALQETL 653 (961)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHH
Confidence 333222 34556666777777777666666665543 3444444443333
No 140
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=95.52 E-value=5.2 Score=44.38 Aligned_cols=35 Identities=11% Similarity=0.055 Sum_probs=26.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 257 REEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLE 291 (640)
Q Consensus 257 ree~~s~le~kE~kie~~k~ei~~aEq~la~~q~e 291 (640)
........+|++.++..++.++..++..+...+.+
T Consensus 166 ~~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~ 200 (444)
T TIGR03017 166 VEPAQKAALWFVQQIAALREDLARAQSKLSAYQQE 200 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556667888888888888888888888887664
No 141
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.45 E-value=9.2 Score=46.83 Aligned_cols=163 Identities=16% Similarity=0.206 Sum_probs=78.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHh-----hHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 257 REEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEIS-----SQKLETKELSEKLEAVNAKAQSFE 331 (640)
Q Consensus 257 ree~~s~le~kE~kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~-----~le~el~~L~ekle~~~~eies~e 331 (640)
..++....+.....+..++..+...++....++... -+.++|+-++.... ....+..........+...+..+.
T Consensus 190 e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~-~~~~~Ie~l~~k~~~v~y~~~~~ey~~~k~~~~r~k~~~r~l~ 268 (1072)
T KOG0979|consen 190 EKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERE-RKKSKIELLEKKKKWVEYKKHDREYNAYKQAKDRAKKELRKLE 268 (1072)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccccchHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555554332 12223332222211 112222223333333344444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 006565 332 REARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQI 411 (640)
Q Consensus 332 ~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~areead~aq~E~~elQr~~~qrlaeIerl~~qI 411 (640)
+....+..-+..|+.....-+.++......|.++...+.+.-+..+....++..+......+++..-.+.+.|+++..-|
T Consensus 269 k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i 348 (1072)
T KOG0979|consen 269 KEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMI 348 (1072)
T ss_pred HhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444555555555555555555555555566666666666666666666666666666655555
Q ss_pred HHHHHHHHH
Q 006565 412 ESLERQKTD 420 (640)
Q Consensus 412 E~lEre~e~ 420 (640)
..++.++..
T Consensus 349 ~~~q~el~~ 357 (1072)
T KOG0979|consen 349 LDAQAELQE 357 (1072)
T ss_pred HHHHhhhhh
Confidence 555554433
No 142
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=95.42 E-value=1.7 Score=51.79 Aligned_cols=74 Identities=15% Similarity=0.154 Sum_probs=48.9
Q ss_pred hhcchHHhHHhhHHhHHhhhhhhHHHHHHHHHHHhHhhHhhHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 142 ENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWK 221 (640)
Q Consensus 142 k~~s~ee~~~~l~k~le~~~~e~~ew~~kYe~~~~~~k~~~~~~AAGIsklK~Rkkeae~RL~at~enL~RVkDel~Ewk 221 (640)
-..=|+++...+.++|+.++.....|+.++.-... ....-...+|.....+|..++-....-+
T Consensus 195 a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~-----------------~~~~~~~~~L~~l~~ql~~a~~~~~~a~ 257 (754)
T TIGR01005 195 AADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMG-----------------NNATLATQQLAELNTELSRARANRAAAE 257 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc-----------------CCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456888888999999999999999987643211 1112233566666677777666666666
Q ss_pred HHHHHHHHHHH
Q 006565 222 RKYGVAVREAK 232 (640)
Q Consensus 222 rky~~L~~QAK 232 (640)
..|+.+..+..
T Consensus 258 a~~~~l~~~l~ 268 (754)
T TIGR01005 258 GTADSVKKALQ 268 (754)
T ss_pred HHHHHHHHHHh
Confidence 66666666554
No 143
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=95.38 E-value=8.2 Score=45.86 Aligned_cols=45 Identities=27% Similarity=0.223 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 439 VALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAA 484 (640)
Q Consensus 439 v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~l~e 484 (640)
..++...++.+...++.. ....++++..+.....+|+-++.....
T Consensus 561 ~~e~~~~~~~Lq~~~ek~-~~~le~i~~~~~e~~~ele~~~~k~~r 605 (698)
T KOG0978|consen 561 AQEAKQSLEDLQIELEKS-EAKLEQIQEQYAELELELEIEKFKRKR 605 (698)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555 555555555555555555544444333
No 144
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=95.37 E-value=5 Score=43.29 Aligned_cols=166 Identities=24% Similarity=0.322 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 275 ATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQ-SFEREARIMEQDKVYLEQKYKSEFE 353 (640)
Q Consensus 275 k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eie-s~e~el~~L~~ei~~L~ekl~se~e 353 (640)
...+....++..+++.++.-.-.+.+.+..++..+...--.+..+-+.-+..|. .+-+++..|+.++..|-..|+.+.+
T Consensus 26 ~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~keKe~L~~~~e~EEE 105 (310)
T PF09755_consen 26 RKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQLKKEKETLALKYEQEEE 105 (310)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444444443333333332 2344455555555555443333322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcHHH
Q 006565 354 RFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLA-MERMAVIERVQRQIESLERQKTDLTNEVNRIRESE 432 (640)
Q Consensus 354 r~ee~~~rleeaEee~kea~e~~~~areead~aq~E~~elQr~~-~qrlaeIerl~~qIE~lEre~e~Le~E~~~l~~sE 432 (640)
.+ + .....-+...+.+..++.... .+-...|.+|..+|.+++++.......+.+|+ .|
T Consensus 106 ~l-----------------t---n~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr-~E 164 (310)
T PF09755_consen 106 FL-----------------T---NDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLR-RE 164 (310)
T ss_pred HH-----------------H---HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HH
Confidence 21 1 122223344455555555444 22334445555555555554444444444444 33
Q ss_pred -------HHHHHH--HHHHHHHHHHHHHHHHHHHHhhHH
Q 006565 433 -------LEALSK--VALLEARVEEREKEIESLLESNNE 462 (640)
Q Consensus 433 -------l~al~k--v~~lE~~vee~e~eiE~L~~~~~e 462 (640)
++.=.. |..|-++++.+..+...| +..++
T Consensus 165 KVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~L-q~~l~ 202 (310)
T PF09755_consen 165 KVDLENTLEQEQEALVNRLWKQMDKLEAEKRRL-QEKLE 202 (310)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHc
Confidence 222222 444444444444444444 44443
No 145
>PRK10698 phage shock protein PspA; Provisional
Probab=95.27 E-value=4.2 Score=41.80 Aligned_cols=113 Identities=13% Similarity=0.253 Sum_probs=75.6
Q ss_pred HhHHHHHHHhhHHhHHHHHhhHHHHHHHHhHHhhhcchHHhHHhhHHhHHhhhhhhHHHHHHHHHHHhHhh-HhhH----
Q 006565 109 RYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQK-AMED---- 183 (640)
Q Consensus 109 k~~~~~~k~~e~~i~d~kk~~~~~~~~~~~l~~k~~s~ee~~~~l~k~le~~~~e~~ew~~kYe~~~~~~k-~~~~---- 183 (640)
+.---|.+-.++.+.+.++....+.+.. ..+..+++.....+.+|..+=..+|..-. -+-.
T Consensus 27 k~l~q~i~em~~~l~~~r~alA~~~A~~--------------k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~ 92 (222)
T PRK10698 27 KLVRLMIQEMEDTLVEVRSTSARALAEK--------------KQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALI 92 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4445555555555555544444444433 34556778888889999999888887332 1111
Q ss_pred ---HHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 184 ---QVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAAL 235 (640)
Q Consensus 184 ---~~AAGIsklK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAe 235 (640)
.++..|..|+........-+.....++...+..+.+++.+.++|...++.|.
T Consensus 93 ~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~ 147 (222)
T PRK10698 93 EKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAAS 147 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2555677777777777777777777888888888888888888877777776
No 146
>PF13514 AAA_27: AAA domain
Probab=95.19 E-value=12 Score=46.79 Aligned_cols=32 Identities=9% Similarity=0.055 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 006565 475 LESERRSRAAANAMAERLSLEVQSAQAKLDEM 506 (640)
Q Consensus 475 le~~re~l~e~nrrleal~~e~~~lqs~id~L 506 (640)
++.....+....++--.+..=..++..-++.+
T Consensus 942 ~e~~~a~l~~~~~~~~~~~la~~lL~~a~~~~ 973 (1111)
T PF13514_consen 942 REEAEAELEELAEEWAALRLAAELLEEAIERY 973 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333444444444444444
No 147
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=95.17 E-value=8.3 Score=44.68 Aligned_cols=185 Identities=10% Similarity=0.107 Sum_probs=96.2
Q ss_pred HHhhhhhhHHHHHHHHHHHhHhhHhhHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH
Q 006565 157 VDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQE------EVEEWKRKYGVAVRE 230 (640)
Q Consensus 157 le~~~~e~~ew~~kYe~~~~~~k~~~~~~AAGIsklK~Rkkeae~RL~at~enL~RVkD------el~Ewkrky~~L~~Q 230 (640)
||..-+ ..+++..|..+..+.+... ..+..++.+..+...+++-.+-+++.++. +-.+++..++.|.+-
T Consensus 150 LD~~~~-~~~~~~~~~~~~~~~~~~~----~~L~~l~~~~~~~~~eld~L~~ql~ELe~~~l~~~E~e~L~~e~~~L~n~ 224 (563)
T TIGR00634 150 LDTFAG-ANEKVKAYRELYQAWLKAR----QQLKDRQQKEQELAQRLDFLQFQLEELEEADLQPGEDEALEAEQQRLSNL 224 (563)
T ss_pred HHHhcC-chHHHHHHHHHHHHHHHHH----HHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCcCCCcHHHHHHHHHHHhCH
Confidence 444333 3456666666665555433 34566667777777777777777666654 334466666666663
Q ss_pred HHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHH
Q 006565 231 AKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQK 310 (640)
Q Consensus 231 AKkAeek~a~L~er~~~~~q~r~~a~ree~~s~le~kE~kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le 310 (640)
.+-.. .+...-.............+...+......+. .+ .-..+......+....-.+.++...+..+-..+..-.
T Consensus 225 e~i~~-~~~~~~~~L~~~~~~~~~~~~~~l~~~~~~l~-~~--~d~~~~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp 300 (563)
T TIGR00634 225 EKLRE-LSQNALAALRGDVDVQEGSLLEGLGEAQLALA-SV--IDGSLRELAEQVGNALTEVEEATRELQNYLDELEFDP 300 (563)
T ss_pred HHHHH-HHHHHHHHHhCCccccccCHHHHHHHHHHHHH-Hh--hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 33222 22211111110000000011333333333333 21 2334455555555666666666666666667776666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 311 LETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKS 350 (640)
Q Consensus 311 ~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~s 350 (640)
.++..+++++..+..-...|...+..+...+..+..++..
T Consensus 301 ~~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~ 340 (563)
T TIGR00634 301 ERLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQ 340 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 7777777777766666655555555555555555444443
No 148
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=95.04 E-value=8.6 Score=44.16 Aligned_cols=205 Identities=21% Similarity=0.229 Sum_probs=102.4
Q ss_pred HHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
Q 006565 298 KMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFER-----------FEEVQERCKVAE 366 (640)
Q Consensus 298 kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er-----------~ee~~~rleeaE 366 (640)
..-.+-.+...+...+..+.......+.++..|..++...-+.++.+-..+...+.. ++++....+.+.
T Consensus 208 ~~~~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~ 287 (511)
T PF09787_consen 208 HYIEYLRESGELQEQLELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLEEGFDSSTNSIELEELKQERDHLQ 287 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccccccchhcchhhHHHHHHHH
Confidence 344444555566667777777777777777777766666656655554444442211 344444555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhHHHHhhhcHHHHHHHHH-HHHH
Q 006565 367 KEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESL---ERQKTDLTNEVNRIRESELEALSK-VALL 442 (640)
Q Consensus 367 ee~kea~e~~~~areead~aq~E~~elQr~~~qrlaeIerl~~qIE~l---Ere~e~Le~E~~~l~~sEl~al~k-v~~l 442 (640)
+++..+..+++..+.++.....+...-....-+. ...+..++... +-++..+..+...++ +.+.. .+.+
T Consensus 288 ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~---~~~~~~~~~~~~~~e~e~~l~~~el~~~~----ee~~~~~s~~ 360 (511)
T PF09787_consen 288 EEIQLLERQIEQLRAELQDLEAQLEGEQESFREQ---PQELSQQLEPELTTEAELRLYYQELYHYR----EELSRQKSPL 360 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---HHHHHHHHHHHhchHHHHHHHHHHHHHHH----HHHHHhcChH
Confidence 5555555555444444433333222211111111 11111111111 222222222333333 22223 4555
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Q 006565 443 EARVEEREKEIESLLESNNEQRA--STVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQEL 510 (640)
Q Consensus 443 E~~vee~e~eiE~L~~~~~eq~~--~~l~~le~~le~~re~l~e~nrrleal~~e~~~lqs~id~Leg~~ 510 (640)
..++.+++.++..| ......+. +.-..++..+..+.+.+-+....++.+..+...+.=.++.++..+
T Consensus 361 ~~k~~~ke~E~q~l-r~~l~~~~~~s~~~elE~rl~~lt~~Li~KQ~~lE~l~~ek~al~lqlErl~~~l 429 (511)
T PF09787_consen 361 QLKLKEKESEIQKL-RNQLSARASSSSWNELESRLTQLTESLIQKQTQLESLGSEKNALRLQLERLETQL 429 (511)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHhccCCcHhHHHHHhhccHHHHHHHHHHHHHHhhhhhccccHHHHHHHH
Confidence 56666666666666 44443333 233466777777777777777777777776666666666666554
No 149
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=95.02 E-value=11 Score=45.47 Aligned_cols=14 Identities=29% Similarity=0.330 Sum_probs=6.7
Q ss_pred chhhhhhccCCChH
Q 006565 613 FGAELLQLRNPNKK 626 (640)
Q Consensus 613 ~g~~l~~l~~~~k~ 626 (640)
+|.+|+..-.....
T Consensus 729 ~~eel~~~~~di~~ 742 (980)
T KOG0980|consen 729 LGEELLPKELDIDQ 742 (980)
T ss_pred HhHHhccccchhhH
Confidence 56666544433333
No 150
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.99 E-value=10 Score=44.78 Aligned_cols=111 Identities=14% Similarity=0.198 Sum_probs=82.3
Q ss_pred HhHHHHHHHhhHHhHHHHHhhHHHHHHHHhHHhhhcchHHhHHhhHHhHHhhhhhhHHHHHHHHHHHhHhhHhhHHHhhh
Q 006565 109 RYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSE 188 (640)
Q Consensus 109 k~~~~~~k~~e~~i~d~kk~~~~~~~~~~~l~~k~~s~ee~~~~l~k~le~~~~e~~ew~~kYe~~~~~~k~~~~~~AAG 188 (640)
|..+...+-|+.-+..+.++-.. +..++ .+++++|..+.++++-....+.+-.+|-.+..+.+...--....-
T Consensus 87 k~~~i~~r~~~~~~dr~~~~~~~----l~~~q---~a~~~~e~~lq~q~e~~~n~~q~~~~k~~el~~e~~~k~ae~~~l 159 (716)
T KOG4593|consen 87 KAQSILARNYEAEVDRKHKLLTR----LRQLQ---EALKGQEEKLQEQLERNRNQCQANLKKELELLREKEDKLAELGTL 159 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888899999888443322 22333 678889999999999999999999999888888877666666777
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 189 IEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGV 226 (640)
Q Consensus 189 IsklK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~ 226 (640)
|-+|.++-+++...+.--...+.++--.+...++.|+-
T Consensus 160 r~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~ 197 (716)
T KOG4593|consen 160 RNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDR 197 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888877777777777666665555554444443
No 151
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=94.81 E-value=11 Score=44.10 Aligned_cols=113 Identities=18% Similarity=0.260 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcHHH--------HHHHHH-HHHHHHHHHHHHHHHHHH---HHhhH
Q 006565 394 ENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESE--------LEALSK-VALLEARVEEREKEIESL---LESNN 461 (640)
Q Consensus 394 Qr~~~qrlaeIerl~~qIE~lEre~e~Le~E~~~l~~sE--------l~al~k-v~~lE~~vee~e~eiE~L---~~~~~ 461 (640)
.-+++=...++++.+..|..++++++.|..+...-. +. +++..- +...+..+..+-.+++.+ +....
T Consensus 234 ~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N-~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~ 312 (629)
T KOG0963|consen 234 AAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKAN-SSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEER 312 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333455556666777777777777777766654443 22 222222 333444444444444433 12233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 006565 462 EQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQ 508 (640)
Q Consensus 462 eq~~~~l~~le~~le~~re~l~e~nrrleal~~e~~~lqs~id~Leg 508 (640)
+.-..+|..++.++......+.+..+++.+- .-|+-++..+..|..
T Consensus 313 e~~~~qI~~le~~l~~~~~~leel~~kL~~~-sDYeeIK~ELsiLk~ 358 (629)
T KOG0963|consen 313 EKHKAQISALEKELKAKISELEELKEKLNSR-SDYEEIKKELSILKA 358 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccHHHHHHHHHHHHH
Confidence 4456677777777777777777776666543 334455555554443
No 152
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=94.81 E-value=5.2 Score=40.52 Aligned_cols=70 Identities=24% Similarity=0.326 Sum_probs=37.8
Q ss_pred HHhhHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 298 KMRSYEVEISSQKL-ETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEK 367 (640)
Q Consensus 298 kIk~~e~ei~~le~-el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEe 367 (640)
.|+.|=++|=.... =|+.|.+....+.......++....+..+..+|.+-+..+.....++...+...++
T Consensus 13 ~iK~YYndIT~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~k 83 (201)
T PF13851_consen 13 EIKNYYNDITLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEK 83 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444433332 24555555555555566666666666666666666665555555555555555433
No 153
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=94.74 E-value=7.3 Score=46.11 Aligned_cols=107 Identities=23% Similarity=0.298 Sum_probs=62.4
Q ss_pred hHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhHH--HH
Q 006565 188 EIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSST--LA 265 (640)
Q Consensus 188 GIsklK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a~L~er~~~~~q~r~~a~ree~~s~--le 265 (640)
..+..++|-.+++.-+..+.-++..+.....-..+....+..|-+-.+.+...+..+.. .++ ++..... .+
T Consensus 22 q~a~~ttr~~e~e~~~~~ar~~~~~a~e~~~~lq~~~~e~~aqk~d~E~ritt~e~rfl-naq------re~t~~~d~nd 94 (916)
T KOG0249|consen 22 QLAPLTTRVPELEHSLPEARKDLIKAEEMNTKLQRDIREAMAQKEDMEERITTLEKRFL-NAQ------RESTSIHDLND 94 (916)
T ss_pred ccCCCcCCcHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhHHhhhcccccccchHHHHHH-hcc------CCCCCcccchH
Confidence 34445588888877777666666555544443333333333333333344444444442 222 2222222 67
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006565 266 EKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRS 301 (640)
Q Consensus 266 ~kE~kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~ 301 (640)
.+++.+....+.+-..+.+..+++..|.-++.++..
T Consensus 95 klE~~Lankda~lrq~eekn~slqerLelaE~~l~q 130 (916)
T KOG0249|consen 95 KLENELANKDADLRQNEEKNRSLQERLELAEPKLQQ 130 (916)
T ss_pred HHHHHHhCcchhhchhHHhhhhhhHHHHHhhHhhHh
Confidence 778888888888888888888888888666665544
No 154
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=94.69 E-value=7.4 Score=41.74 Aligned_cols=196 Identities=14% Similarity=0.174 Sum_probs=125.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 006565 257 REEFSSTLAEKEEEMKEKATKI-------EHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQS 329 (640)
Q Consensus 257 ree~~s~le~kE~kie~~k~ei-------~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies 329 (640)
.-++..++..+.++-..+.+++ ...|-++.+++..|..+...-..-.+-...++.-+..-.+.--.+..+
T Consensus 58 i~qy~~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdk--- 134 (305)
T PF14915_consen 58 IFQYNGQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDK--- 134 (305)
T ss_pred HHHHhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHH---
Confidence 4444444444444444444444 334445555555555444433333332222222222222222233332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 006565 330 FEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQR 409 (640)
Q Consensus 330 ~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~areead~aq~E~~elQr~~~qrlaeIerl~~ 409 (640)
....+..|......|.+++.....+|.++...|-.+-..+.+..-.....+-++..++-.+.++..-.---...+...-.
T Consensus 135 mn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~ 214 (305)
T PF14915_consen 135 MNSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIG 214 (305)
T ss_pred hcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 33456678888888889999999999998888888888888888888888888888888888877777544555788878
Q ss_pred HHHHHHHHHHHhHHHHhhhcHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 006565 410 QIESLERQKTDLTNEVNRIRESELEALSK-VALLEARVEEREKEIESL 456 (640)
Q Consensus 410 qIE~lEre~e~Le~E~~~l~~sEl~al~k-v~~lE~~vee~e~eiE~L 456 (640)
..+.++.++-.++.+-.=|+ ..++...+ ..-.+..|-.++..+...
T Consensus 215 Kqes~eERL~QlqsEN~LLr-QQLddA~~K~~~kek~ViniQ~~f~d~ 261 (305)
T PF14915_consen 215 KQESLEERLSQLQSENMLLR-QQLDDAHNKADNKEKTVINIQDQFQDI 261 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 88999999999999888888 77776666 666666666666555444
No 155
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=94.58 E-value=6.6 Score=43.55 Aligned_cols=31 Identities=6% Similarity=0.244 Sum_probs=25.4
Q ss_pred hhcchHHhHHhhHHhHHhhhhhhHHHHHHHH
Q 006565 142 ENISLREKSSSLSKTVDSLKNEISDWKRKYD 172 (640)
Q Consensus 142 k~~s~ee~~~~l~k~le~~~~e~~ew~~kYe 172 (640)
-..-++++...+.++|+.++..-..|++++-
T Consensus 172 ~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~ 202 (444)
T TIGR03017 172 AALWFVQQIAALREDLARAQSKLSAYQQEKG 202 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3556788888888999999999888988863
No 156
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=94.52 E-value=6.4 Score=40.26 Aligned_cols=106 Identities=23% Similarity=0.210 Sum_probs=58.8
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 252 REDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFE 331 (640)
Q Consensus 252 r~~a~ree~~s~le~kE~kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e 331 (640)
..||+......++...+.+...+...+.........+..=..+++..|.....+ ...........+....
T Consensus 6 d~d~~~~~~~~e~~~~E~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e----------~~~~~~~~~~~i~~~~ 75 (207)
T PF05010_consen 6 DLDAAIKKVQEEVAEKEEEEQELKKKYEELHKENQEMRKIMEEYEKTIAQMIEE----------KQKQKELSEAEIQKLL 75 (207)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH----------HHhhHHhHHHHHHHHH
Confidence 355666666666666666666666666666666666666666666555554444 1122333344455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 332 REARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEK 367 (640)
Q Consensus 332 ~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEe 367 (640)
.+...+..++..++.-|.....+|+....-+.....
T Consensus 76 ~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~ 111 (207)
T PF05010_consen 76 KERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKK 111 (207)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555555544444433
No 157
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=94.41 E-value=13 Score=43.40 Aligned_cols=37 Identities=19% Similarity=0.290 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 351 EFERFEEVQERCKVAEKEAKKATELADRERAEAAAAR 387 (640)
Q Consensus 351 e~er~ee~~~rleeaEee~kea~e~~~~areead~aq 387 (640)
+...++-.+.++..++.+|......+..+......++
T Consensus 240 im~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~ 276 (629)
T KOG0963|consen 240 IMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAK 276 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc
Confidence 3456666666677777777777777777776666553
No 158
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=94.36 E-value=18 Score=44.77 Aligned_cols=34 Identities=18% Similarity=0.206 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 315 ELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKY 348 (640)
Q Consensus 315 ~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl 348 (640)
.|..++..++.++++...++..++.++.++...+
T Consensus 480 ~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l 513 (1041)
T KOG0243|consen 480 LLKEEKEKLKSKLQNKNKELESLKEELQQAKATL 513 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666666666666665553
No 159
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=94.31 E-value=6.7 Score=39.65 Aligned_cols=23 Identities=39% Similarity=0.719 Sum_probs=12.4
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHH
Q 006565 434 EALSK-VALLEARVEEREKEIESL 456 (640)
Q Consensus 434 ~al~k-v~~lE~~vee~e~eiE~L 456 (640)
+.+.. +..++..+++-+..+..|
T Consensus 121 eeL~~kL~~~~~~l~~~~~ki~~L 144 (194)
T PF15619_consen 121 EELQRKLSQLEQKLQEKEKKIQEL 144 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344 555555555555555555
No 160
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=93.87 E-value=4.9 Score=41.96 Aligned_cols=116 Identities=24% Similarity=0.304 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 281 AEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQE 360 (640)
Q Consensus 281 aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~ 360 (640)
+++.-..+...|..++.+.+.....+......+..|..+...+..+...++.+...+...+..|........+.-..+..
T Consensus 3 aEr~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~ 82 (246)
T PF00769_consen 3 AEREKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQ 82 (246)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555566666666666666666666666666666666666666665544444444444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 006565 361 RCKVAEKEAKKATELADRERAEAAAARKGKSEFENL 396 (640)
Q Consensus 361 rleeaEee~kea~e~~~~areead~aq~E~~elQr~ 396 (640)
++.+++..+..+.........++...+.++..++..
T Consensus 83 e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~ 118 (246)
T PF00769_consen 83 ELREAEAEIARLEEESERKEEEAEELQEELEEARED 118 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555555544444443
No 161
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=93.58 E-value=9.3 Score=40.59 Aligned_cols=109 Identities=15% Similarity=0.247 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHhhhHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhHHHH
Q 006565 233 AALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLEL-------KAAESKMRSYEVE 305 (640)
Q Consensus 233 kAeek~a~L~er~~~~~q~r~~a~ree~~s~le~kE~kie~~k~ei~~aEq~la~~q~eL-------~e~e~kIk~~e~e 305 (640)
+|..++..++.+.+ .+.-. +.+-+=+++-+++-++..+.+.....-+++.+..+. ..++..-..+.-+
T Consensus 15 ~aLqKIqelE~Qld-kLkKE----~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshd 89 (307)
T PF10481_consen 15 RALQKIQELEQQLD-KLKKE----RQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHD 89 (307)
T ss_pred HHHHHHHHHHHHHH-HHHHH----HHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHH
Confidence 34455555555554 44444 455555566666666666666666666666665554 4444444455555
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 306 ISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQ 346 (640)
Q Consensus 306 i~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~e 346 (640)
+...+.++.+|+-.+.+.+..++.++.++.-++-++.+...
T Consensus 90 lq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~ 130 (307)
T PF10481_consen 90 LQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQ 130 (307)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666666666555555555555555555433
No 162
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.56 E-value=18 Score=41.97 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=11.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHH
Q 006565 257 REEFSSTLAEKEEEMKEKATKIEHAE 282 (640)
Q Consensus 257 ree~~s~le~kE~kie~~k~ei~~aE 282 (640)
.+....+++.++.+++.++.+...+-
T Consensus 296 l~~l~~Eie~kEeE~e~lq~~~d~Lk 321 (581)
T KOG0995|consen 296 LEMLKSEIEEKEEEIEKLQKENDELK 321 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444544444444444433
No 163
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=93.20 E-value=12 Score=38.67 Aligned_cols=49 Identities=10% Similarity=0.267 Sum_probs=32.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 006565 254 DVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYE 303 (640)
Q Consensus 254 ~a~ree~~s~le~kE~kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e 303 (640)
.++...+..++.|++ +++.....+....+.+...=..+..+..+|..+.
T Consensus 17 ~~~i~~l~~al~~L~-~~~~~~~~~~~~~~~i~~aP~~~~~l~~~l~~l~ 65 (240)
T PF12795_consen 17 KALIQDLQQALSFLD-EIKKQKKRAAEYQKQIDQAPKEIRELQKELEALK 65 (240)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Confidence 356777888888888 7777777777666666666555555555555553
No 164
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=93.17 E-value=15 Score=39.79 Aligned_cols=13 Identities=23% Similarity=0.401 Sum_probs=5.4
Q ss_pred HHHhhHHHHHHHH
Q 006565 489 AERLSLEVQSAQA 501 (640)
Q Consensus 489 leal~~e~~~lqs 501 (640)
+..++..++.++.
T Consensus 278 v~~Lk~~~~~Le~ 290 (325)
T PF08317_consen 278 VKRLKAKVDALEK 290 (325)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444443
No 165
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=93.08 E-value=31 Score=43.22 Aligned_cols=34 Identities=15% Similarity=0.221 Sum_probs=14.3
Q ss_pred HHHhHHhhhcchHHhHHhhHHhHHhhhhhhHHHH
Q 006565 135 RINNLQGENISLREKSSSLSKTVDSLKNEISDWK 168 (640)
Q Consensus 135 ~~~~l~~k~~s~ee~~~~l~k~le~~~~e~~ew~ 168 (640)
++..|......+...+..+...+...+.+..++.
T Consensus 448 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (1047)
T PRK10246 448 AIQNVTQEQTQRNAALNEMRQRYKEKTQQLADVK 481 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444433333
No 166
>PRK10869 recombination and repair protein; Provisional
Probab=93.01 E-value=22 Score=41.36 Aligned_cols=43 Identities=16% Similarity=0.252 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHH
Q 006565 281 AEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAV 323 (640)
Q Consensus 281 aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~ 323 (640)
.-..+....-.+.+....++.+-..+..-..++..+++++..+
T Consensus 266 ~~~~l~~~~~~l~~~~~~l~~~~~~~~~dp~~l~~ie~Rl~~l 308 (553)
T PRK10869 266 VLDMLEEALIQIQEASDELRHYLDRLDLDPNRLAELEQRLSKQ 308 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Confidence 3333333333444444444444444444444444444444333
No 167
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.00 E-value=14 Score=39.15 Aligned_cols=162 Identities=15% Similarity=0.186 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 006565 222 RKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESK--- 298 (640)
Q Consensus 222 rky~~L~~QAKkAeek~a~L~er~~~~~q~r~~a~ree~~s~le~kE~kie~~k~ei~~aEq~la~~q~eL~e~e~k--- 298 (640)
.+|..+....+.++.++..|..++. .++.+ +......+.....+++.+..+|...+..|...+.-|..----
T Consensus 38 s~l~~~~~~~~~~q~ei~~L~~qi~-~~~~k----~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~ 112 (265)
T COG3883 38 SKLSELQKEKKNIQNEIESLDNQIE-EIQSK----IDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQV 112 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443 44444 444444444444444444444444444444443333111000
Q ss_pred ---HhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 299 ---MRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATEL 375 (640)
Q Consensus 299 ---Ik~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~kea~e~ 375 (640)
-..| -++=..-..+..+-+|...+..-+.....-+...+.+...|+.+-......++++..-..+++.....+...
T Consensus 113 nG~~t~Y-idvil~SkSfsD~IsRvtAi~~iv~aDk~ile~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~q 191 (265)
T COG3883 113 NGTATSY-IDVILNSKSFSDLISRVTAISVIVDADKKILEQQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQ 191 (265)
T ss_pred cCChhHH-HHHHHccCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0001 112223345666677777777777777777777777777776666666666666665555555555554444
Q ss_pred HHHHHHHHHHHHhh
Q 006565 376 ADRERAEAAAARKG 389 (640)
Q Consensus 376 ~~~areead~aq~E 389 (640)
.......+..+..+
T Consensus 192 k~e~~~l~~~~aa~ 205 (265)
T COG3883 192 KAEKNALIAALAAK 205 (265)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444333333
No 168
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=92.83 E-value=8.7 Score=40.09 Aligned_cols=117 Identities=22% Similarity=0.328 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 270 EMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYK 349 (640)
Q Consensus 270 kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~ 349 (640)
+..++...+.+.+......+..|...+..+..++.+...++.....|..+-..+......+.........+...|..++.
T Consensus 6 ~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~ 85 (246)
T PF00769_consen 6 EKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELR 85 (246)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777778888888888888888888888888888888888888888888888888888888888888866666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 350 SEFERFEEVQERCKVAEKEAKKATELADRERAEAAAA 386 (640)
Q Consensus 350 se~er~ee~~~rleeaEee~kea~e~~~~areead~a 386 (640)
........+.......+.+.......+..++.....+
T Consensus 86 e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~a 122 (246)
T PF00769_consen 86 EAEAEIARLEEESERKEEEAEELQEELEEAREDEEEA 122 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665555555544444445444444444444443333
No 169
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=92.53 E-value=34 Score=42.28 Aligned_cols=42 Identities=14% Similarity=0.232 Sum_probs=24.4
Q ss_pred HhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 185 VCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGV 226 (640)
Q Consensus 185 ~AAGIsklK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~ 226 (640)
|--....+..+-++++..|..-.+-|.+.+|.+...++-.+.
T Consensus 179 ~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~ 220 (1072)
T KOG0979|consen 179 YHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVER 220 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 444455556666666666666666666666666555554443
No 170
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=92.53 E-value=7.3 Score=40.42 Aligned_cols=73 Identities=18% Similarity=0.190 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHH
Q 006565 365 AEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSK 438 (640)
Q Consensus 365 aEee~kea~e~~~~areead~aq~E~~elQr~~~qrlaeIerl~~qIE~lEre~e~Le~E~~~l~~sEl~al~k 438 (640)
+..............+...+....+...+...+-+..++++.++..+..+++.+.....++..+. .+++.+..
T Consensus 26 ~~~~~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~-~qi~~~~~ 98 (251)
T PF11932_consen 26 AQQVQQQWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLE-QQIEQIEE 98 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 33333333333344444444444444444444444444444444444444444444444444444 44444443
No 171
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=92.45 E-value=2 Score=43.03 Aligned_cols=85 Identities=24% Similarity=0.391 Sum_probs=28.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 260 FSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQ 339 (640)
Q Consensus 260 ~~s~le~kE~kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ 339 (640)
+...+..+..++..+..++......+..++.++..+..+|+.+..++.....-+..|.+.+.++.-.....+.++..|+.
T Consensus 93 l~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~ 172 (194)
T PF08614_consen 93 LAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEE 172 (194)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHH
Q 006565 340 DKVYL 344 (640)
Q Consensus 340 ei~~L 344 (640)
|-..|
T Consensus 173 En~~L 177 (194)
T PF08614_consen 173 ENREL 177 (194)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
No 172
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=92.43 E-value=3.8 Score=42.49 Aligned_cols=62 Identities=31% Similarity=0.418 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhHHHHhhhcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 006565 410 QIESLERQKTDLTNEVNRIRESELEALSK-VALLEARVEEREKEIESLLESNNEQRASTVKKLED 473 (640)
Q Consensus 410 qIE~lEre~e~Le~E~~~l~~sEl~al~k-v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~ 473 (640)
.++....+...+..++..+. .|++.+.. ...++..|..++.++.+| +..+..+..+-..+.-
T Consensus 43 ~id~~~~e~~~L~~e~~~l~-~e~e~L~~~~~~l~~~v~~q~~el~~L-~~qi~~~~~~~~~l~p 105 (251)
T PF11932_consen 43 RIDQWDDEKQELLAEYRQLE-REIENLEVYNEQLERQVASQEQELASL-EQQIEQIEETRQELVP 105 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 33444444444444444444 44444444 555555555555555555 4444444444444443
No 173
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=92.38 E-value=33 Score=41.81 Aligned_cols=93 Identities=14% Similarity=0.151 Sum_probs=67.5
Q ss_pred hhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHhhHHHHHhhHHHHHHH
Q 006565 250 QQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAES--------------KMRSYEVEISSQKLETKE 315 (640)
Q Consensus 250 q~r~~a~ree~~s~le~kE~kie~~k~ei~~aEq~la~~q~eL~e~e~--------------kIk~~e~ei~~le~el~~ 315 (640)
+.|.-+-+.++.+++..++..|+.+...+.+++...+..+.+.++.-. -|=..-.++..+.+...+
T Consensus 552 ~~r~rq~~~~~r~~ld~leaa~e~lE~r~~~~e~~~~e~~se~e~~l~~l~l~~el~~~~~~d~ls~mkd~~~~~q~~~E 631 (984)
T COG4717 552 QSRIRQHWQQLRKALDQLEAAYEALEGRFAAAEAAMAEWQSEWEEALDELGLSRELSPEQQLDILSTMKDLKKLMQKKAE 631 (984)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccCCccCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445567777888889999999999999999988888776633322 222333455666777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 316 LSEKLEAVNAKAQSFEREARIMEQDKV 342 (640)
Q Consensus 316 L~ekle~~~~eies~e~el~~L~~ei~ 342 (640)
|+.+...+..+...|+.....+-..+.
T Consensus 632 L~~q~~~L~ee~~af~~~v~~l~~~~e 658 (984)
T COG4717 632 LTHQVARLREEQAAFEERVEGLLAVLE 658 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 888888888888888888888776653
No 174
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=92.33 E-value=2.7 Score=46.31 Aligned_cols=131 Identities=18% Similarity=0.286 Sum_probs=74.2
Q ss_pred hhhhhHHHHHHHHHHHhHhhHhhHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 160 LKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAA 239 (640)
Q Consensus 160 ~~~e~~ew~~kYe~~~~~~k~~~~~~AAGIsklK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a 239 (640)
+.-...+|+--+|-+.-+.|- . .+.-.+.=...|++++.....+...+.+.+.+++-+..+..++.+++.
T Consensus 189 s~vd~~eWklEvERV~PqLKv-----~-----~~~d~kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~ 258 (359)
T PF10498_consen 189 SKVDPAEWKLEVERVLPQLKV-----T-----IRADAKDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIE 258 (359)
T ss_pred ccCCHHHHHHHHHHHhhhhee-----e-----ccCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777777776665531 0 112235555667777777777777777777777777777777777777
Q ss_pred HHHHhhhHHHhhhHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 006565 240 IVQERTSKEMQQREDVLREEFSST---LAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEV 304 (640)
Q Consensus 240 ~L~er~~~~~q~r~~a~ree~~s~---le~kE~kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ 304 (640)
+-+..+|.+++.- ..++... +.....+|..+..-+...-..|+....+|.....+|....+
T Consensus 259 sREk~iN~qle~l----~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~ 322 (359)
T PF10498_consen 259 SREKYINNQLEPL----IQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGS 322 (359)
T ss_pred HHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7766666443333 3333322 44444455555555555555555555555444444444433
No 175
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=91.75 E-value=22 Score=38.50 Aligned_cols=149 Identities=21% Similarity=0.302 Sum_probs=94.8
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 301 SYEVEISSQKLETKELSEKLEAVNAKA-QSFEREARIMEQDKVYLEQKYKSEFER-FEEVQERCKVAEKEAKKATELADR 378 (640)
Q Consensus 301 ~~e~ei~~le~el~~L~ekle~~~~ei-es~e~el~~L~~ei~~L~ekl~se~er-~ee~~~rleeaEee~kea~e~~~~ 378 (640)
.+-..|..++.+-..|..+++.-+..+ ..+.+++..|.+++..|+..++.+.+- +..+...|..++. +...
T Consensus 81 ~LlKkl~~l~keKe~L~~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~-------e~~~ 153 (310)
T PF09755_consen 81 TLLKKLQQLKKEKETLALKYEQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEK-------EKSA 153 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-------HHHH
Confidence 344556666666666666666555444 457788999999999998888876644 4555555555533 3445
Q ss_pred HHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhh-----cHHHHH--HHHH--HHHHHHHHHH
Q 006565 379 ERAEAAAARKGKSEFENLA-MERMAVIERVQRQIESLERQKTDLTNEVNRI-----RESELE--ALSK--VALLEARVEE 448 (640)
Q Consensus 379 areead~aq~E~~elQr~~-~qrlaeIerl~~qIE~lEre~e~Le~E~~~l-----~~sEl~--al~k--v~~lE~~vee 448 (640)
.+..++..+.++..+.+.+ .+-+.-+.+|..+++.|..++-.|+..+..- .+.... .... +..+.++|..
T Consensus 154 ~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~s~~d~~~~~~~~Dt~e~~~shI~~ 233 (310)
T PF09755_consen 154 KQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQPVSAPPSPRDTVNVSEENDTAERLSSHIRS 233 (310)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCcchHHhhcccCCchhHHHHHHHH
Confidence 5666777788888887777 5566667788888888888888777776641 111111 1111 4555666666
Q ss_pred HHHHHHHH
Q 006565 449 REKEIESL 456 (640)
Q Consensus 449 ~e~eiE~L 456 (640)
+..++..|
T Consensus 234 Lr~EV~RL 241 (310)
T PF09755_consen 234 LRQEVSRL 241 (310)
T ss_pred HHHHHHHH
Confidence 66655555
No 176
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=91.74 E-value=16 Score=36.97 Aligned_cols=51 Identities=12% Similarity=0.107 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHH
Q 006565 270 EMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKL 320 (640)
Q Consensus 270 kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekl 320 (640)
-|..++.++..+..........+.+...+.+.+..-+..+..+...|...+
T Consensus 28 lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L 78 (201)
T PF13851_consen 28 LIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQL 78 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 556666666666666666666666666555555555555555555554443
No 177
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=91.73 E-value=25 Score=42.36 Aligned_cols=52 Identities=13% Similarity=0.238 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 283 QCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREA 334 (640)
Q Consensus 283 q~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el 334 (640)
+++..++......-.++..+..++..+......|.++++.+..+.+.+.+++
T Consensus 565 ~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~ 616 (717)
T PF10168_consen 565 RRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRV 616 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333444444444444333333333333333333333333
No 178
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=91.65 E-value=6.6 Score=36.89 Aligned_cols=40 Identities=20% Similarity=0.263 Sum_probs=18.4
Q ss_pred HHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 294 AAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFERE 333 (640)
Q Consensus 294 e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~e 333 (640)
...+.|+.++.++..++.++..|......+..++..+..+
T Consensus 20 ~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~ 59 (120)
T PF12325_consen 20 RLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEE 59 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444443333
No 179
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=91.63 E-value=7.5 Score=36.53 Aligned_cols=35 Identities=14% Similarity=0.162 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 006565 465 ASTVKKLEDLLESERRSRAAANAMAERLSLEVQSA 499 (640)
Q Consensus 465 ~~~l~~le~~le~~re~l~e~nrrleal~~e~~~l 499 (640)
...+..++.......+-+.+....++.|++-+.-+
T Consensus 74 ~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~Dl 108 (120)
T PF12325_consen 74 EQELEELQQRYQTLLELLGEKSEEVEELRADVQDL 108 (120)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 33333333333333333444444444444433333
No 180
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=91.52 E-value=3.7 Score=35.22 Aligned_cols=67 Identities=21% Similarity=0.343 Sum_probs=54.6
Q ss_pred HHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 291 ELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEE 357 (640)
Q Consensus 291 eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee 357 (640)
.|..++.+|......|..++.++..|..+...+......+..+...|+++.......+.+.-+++++
T Consensus 5 ~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~~ 71 (72)
T PF06005_consen 5 LLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKLEE 71 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4678888888888889999999999988888888888888888888888887777777777777654
No 181
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=91.31 E-value=10 Score=44.18 Aligned_cols=44 Identities=25% Similarity=0.447 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHH
Q 006565 394 ENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSK 438 (640)
Q Consensus 394 Qr~~~qrlaeIerl~~qIE~lEre~e~Le~E~~~l~~sEl~al~k 438 (640)
.+.+..+...+++++.++..|++.++.+.+++..|+ ++++.+..
T Consensus 421 ~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~-~~l~~~~r 464 (652)
T COG2433 421 EKRIKKLEETVERLEEENSELKRELEELKREIEKLE-SELERFRR 464 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 334444444455555555555555555554444444 44444433
No 182
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=91.27 E-value=4.1 Score=43.96 Aligned_cols=35 Identities=17% Similarity=0.101 Sum_probs=16.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006565 387 RKGKSEFENLAMERMAVIERVQRQIESLERQKTDL 421 (640)
Q Consensus 387 q~E~~elQr~~~qrlaeIerl~~qIE~lEre~e~L 421 (640)
-.+....+...++...+...+.++++....+++.|
T Consensus 98 ~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L 132 (314)
T PF04111_consen 98 WREYNELQLELIEFQEERDSLKNQYEYASNQLDRL 132 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444
No 183
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=91.07 E-value=4.2 Score=43.92 Aligned_cols=25 Identities=16% Similarity=0.218 Sum_probs=13.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHH
Q 006565 483 AAANAMAERLSLEVQSAQAKLDEMQ 507 (640)
Q Consensus 483 ~e~nrrleal~~e~~~lqs~id~Le 507 (640)
.+.....+++.+++..+...++.|+
T Consensus 109 ~~~~~e~~sl~~q~~~~~~~L~~L~ 133 (314)
T PF04111_consen 109 IEFQEERDSLKNQYEYASNQLDRLR 133 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333445555566666666666654
No 184
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=91.01 E-value=4.6 Score=40.38 Aligned_cols=86 Identities=19% Similarity=0.234 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 270 EMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYK 349 (640)
Q Consensus 270 kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~ 349 (640)
++..+...-....+.+..++..+..++.++......+..+..++..|..+...+...+....+-+..+.+|+..|.-.+.
T Consensus 82 ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~ 161 (194)
T PF08614_consen 82 ELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLN 161 (194)
T ss_dssp --------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444555555555555555555555555555555555555555555555544444444444444444443
Q ss_pred HHHHHH
Q 006565 350 SEFERF 355 (640)
Q Consensus 350 se~er~ 355 (640)
...+++
T Consensus 162 ~~e~k~ 167 (194)
T PF08614_consen 162 MLEEKL 167 (194)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 185
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=90.84 E-value=20 Score=36.25 Aligned_cols=130 Identities=15% Similarity=0.215 Sum_probs=77.1
Q ss_pred hHHHHHHHhhHHhHHHHHhhHHHHHHHHhHHhhhcchHHhHHhhHHhHHhhhhhhHHHHHHHHHHHhHhhHhhHHHhhhH
Q 006565 110 YKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEI 189 (640)
Q Consensus 110 ~~~~~~k~~e~~i~d~kk~~~~~~~~~~~l~~k~~s~ee~~~~l~k~le~~~~e~~ew~~kYe~~~~~~k~~~~~~AAGI 189 (640)
....+....++|.-=+...+.+....+..+..-+-..--.--.+..+++.....+.+|..+=..++..- .+++|-..
T Consensus 13 ~~~~~ld~~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g---~edLAr~a 89 (221)
T PF04012_consen 13 NINELLDKAEDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAG---REDLAREA 89 (221)
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CHHHHHHH
Confidence 334444555566644455555555555555555555555556677888888899999999988888744 35555444
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006565 190 EVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERT 245 (640)
Q Consensus 190 sklK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a~L~er~ 245 (640)
. .++...+..+.....+++.+...+...+.++..+..+-.....+...|..+.
T Consensus 90 l---~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~ 142 (221)
T PF04012_consen 90 L---QRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARE 142 (221)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 4555555555555555555555555555555555554444444444444443
No 186
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=90.73 E-value=21 Score=36.44 Aligned_cols=76 Identities=18% Similarity=0.176 Sum_probs=27.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 306 ISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERA 381 (640)
Q Consensus 306 i~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~are 381 (640)
|+.++.++++.......--++|.++...++.+.................+.+-...++..+.++.+...+++..+.
T Consensus 12 IsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLre 87 (202)
T PF06818_consen 12 ISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLRE 87 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhh
Confidence 3333333333333333333333333333333333333333333333333333333333333333333333333333
No 187
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=90.36 E-value=47 Score=40.02 Aligned_cols=151 Identities=15% Similarity=0.142 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 271 MKEKATKIEHAEQCLTTLRLELKAAESK------------MRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIME 338 (640)
Q Consensus 271 ie~~k~ei~~aEq~la~~q~eL~e~e~k------------Ik~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~ 338 (640)
++-++.+..++..++..++..|.+.+.- +-.+.+--..++.++.++....+.+..+-+.+-+-+...+
T Consensus 389 ~QplrsENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~ 468 (861)
T PF15254_consen 389 MQPLRSENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQK 468 (861)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHH
Confidence 3445555555555555555555443322 2333444556677777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 339 QDKVYLEQKYKSEFERFEEVQERCK----VAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESL 414 (640)
Q Consensus 339 ~ei~~L~ekl~se~er~ee~~~rle----eaEee~kea~e~~~~areead~aq~E~~elQr~~~qrlaeIerl~~qIE~l 414 (640)
+|..++..-+..-.+.+.+-...|+ ...-++.+|.-.++..+-.++++.+|..-+---+-||.|+|.||+.-.-.|
T Consensus 469 ~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~L 548 (861)
T PF15254_consen 469 EENKRLRKMFQEKDQELLENKQQFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRELTRTL 548 (861)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHH
Confidence 7777776655544444444333333 345577777777788888888888888888888888888888885555445
Q ss_pred HHHHHHh
Q 006565 415 ERQKTDL 421 (640)
Q Consensus 415 Ere~e~L 421 (640)
+.-..++
T Consensus 549 Q~Sma~l 555 (861)
T PF15254_consen 549 QNSMAKL 555 (861)
T ss_pred HHHHHHH
Confidence 4444444
No 188
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=90.26 E-value=59 Score=40.78 Aligned_cols=26 Identities=12% Similarity=0.151 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 463 QRASTVKKLEDLLESERRSRAAANAM 488 (640)
Q Consensus 463 q~~~~l~~le~~le~~re~l~e~nrr 488 (640)
.+...+..++..+......+.....+
T Consensus 826 ~l~~~~~~~~~~~~~~~~~~~~~~~~ 851 (1047)
T PRK10246 826 QIQQELAQLAQQLRENTTRQGEIRQQ 851 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433
No 189
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=90.22 E-value=45 Score=39.34 Aligned_cols=100 Identities=24% Similarity=0.313 Sum_probs=56.5
Q ss_pred HHHhhhHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhhHHHHHhhHHHHH
Q 006565 241 VQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAES-------KMRSYEVEISSQKLET 313 (640)
Q Consensus 241 L~er~~~~~q~r~~a~ree~~s~le~kE~kie~~k~ei~~aEq~la~~q~eL~e~e~-------kIk~~e~ei~~le~el 313 (640)
++++.. .++.. ++.+.-++..+-...+....+|...|-+|+..+..|+..++ .+..+++.+-.+=-++
T Consensus 109 yQerLa-RLe~d----kesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqellsrtsLETqKlDLmaev 183 (861)
T KOG1899|consen 109 YQERLA-RLEMD----KESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQELLSRTSLETQKLDLMAEV 183 (861)
T ss_pred HHHHHH-HHhcc----hhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHhhhhHHHHHhHHHHHH
Confidence 455553 44444 55555555555555555555566666666655555544332 2244555555555566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 314 KELSEKLEAVNAKAQSFEREARIMEQDKVYLE 345 (640)
Q Consensus 314 ~~L~ekle~~~~eies~e~el~~L~~ei~~L~ 345 (640)
.+|.-++..++.+...++++++-.+..++|+.
T Consensus 184 SeLKLkltalEkeq~e~E~K~R~se~l~qevn 215 (861)
T KOG1899|consen 184 SELKLKLTALEKEQNETEKKLRLSENLMQEVN 215 (861)
T ss_pred HHhHHHHHHHHHHhhhHHHHHHhHHHHHHHHH
Confidence 66666666666666666666666666666654
No 190
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=89.99 E-value=17 Score=40.21 Aligned_cols=105 Identities=22% Similarity=0.273 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 218 EEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAES 297 (640)
Q Consensus 218 ~Ewkrky~~L~~QAKkAeek~a~L~er~~~~~q~r~~a~ree~~s~le~kE~kie~~k~ei~~aEq~la~~q~eL~e~e~ 297 (640)
.+||.-++......+.-...+. .+...++.+..++...++.....-+.+.+.+....+.+...+.+|.+...
T Consensus 216 kDWR~hleqm~~~~~~I~~~~~--------~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~ 287 (359)
T PF10498_consen 216 KDWRSHLEQMKQHKKSIESALP--------ETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQE 287 (359)
T ss_pred chHHHHHHHHHHHHHHHHHhhh--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3666666655544333322222 33333334555566666666655666666666666666666666666666
Q ss_pred HHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 006565 298 KMRSYEVEISSQKLETKELSEKLEAVNAKAQSF 330 (640)
Q Consensus 298 kIk~~e~ei~~le~el~~L~ekle~~~~eies~ 330 (640)
+.+....-+.....++..+.++++.++.+++..
T Consensus 288 ~y~~~s~~V~~~t~~L~~IseeLe~vK~emeer 320 (359)
T PF10498_consen 288 KYKQASEGVSERTRELAEISEELEQVKQEMEER 320 (359)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666666666666666666666666666666543
No 191
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=89.99 E-value=51 Score=39.67 Aligned_cols=103 Identities=22% Similarity=0.226 Sum_probs=63.6
Q ss_pred HHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 297 SKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELA 376 (640)
Q Consensus 297 ~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~kea~e~~ 376 (640)
.+++...+++..+..+|+.|..++..... .+......+..++..|..++....+...+-.+++..++.++..+...+
T Consensus 359 ~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~---~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l~~~A 435 (717)
T PF09730_consen 359 CKYKVAVSEVIQLKAELKALKSKYNELEE---RYKQEKDRLESEVQNLKEKLMSLEKSSREDQERISELEKELRALSKLA 435 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444443333 333344445556666666666666666666678888888888888888
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH
Q 006565 377 DRERAEAAAARKGKSEFENLAMERMA 402 (640)
Q Consensus 377 ~~areead~aq~E~~elQr~~~qrla 402 (640)
......+..||.+.......+.++--
T Consensus 436 ~E~q~~LnsAQDELvtfSEeLAqLYH 461 (717)
T PF09730_consen 436 GESQGSLNSAQDELVTFSEELAQLYH 461 (717)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888887777755543
No 192
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=89.93 E-value=26 Score=36.26 Aligned_cols=22 Identities=32% Similarity=0.619 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHhHHHHhhhc
Q 006565 408 QRQIESLERQKTDLTNEVNRIR 429 (640)
Q Consensus 408 ~~qIE~lEre~e~Le~E~~~l~ 429 (640)
...+...+.++..+...+..++
T Consensus 62 ~~~~~~~~~r~~~l~~~i~~~~ 83 (302)
T PF10186_consen 62 KREIEELRERLERLRERIERLR 83 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444443
No 193
>PF15294 Leu_zip: Leucine zipper
Probab=89.69 E-value=32 Score=36.83 Aligned_cols=192 Identities=16% Similarity=0.219 Sum_probs=123.6
Q ss_pred HHHHHHHHHhhH-----HhHHHHHHHhhHHhHHHHHhhHHHHHHHHhHHhhhcchHHhHHhhHHhHHhhhhhhHHHHHHH
Q 006565 97 MKLLKKQLEDSE-----RYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKY 171 (640)
Q Consensus 97 ~~~~~k~le~~~-----k~~~~~~k~~e~~i~d~kk~~~~~~~~~~~l~~k~~s~ee~~~~l~k~le~~~~e~~ew~~kY 171 (640)
.+-|...|+|+. -.-++++..+--++.+++.+-......+-.|+.-++.+|+|. |.++.+ +-|..+|-+..
T Consensus 32 ~~EV~~~ldgL~~~v~~~vesEL~N~~htn~lllrql~~qAek~~lkl~~diselEn~e--LLe~i~--~~E~~~~~~~~ 107 (278)
T PF15294_consen 32 SDEVTEMLDGLQVVVKSEVESELINTSHTNVLLLRQLFSQAEKWYLKLQTDISELENRE--LLEQIA--EFEKQEFTSSF 107 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHhcccHHHHHHHH--HHHHHH--HHHHhhhcccC
Confidence 345666677776 345789999999999999999999999999999999999985 556665 44556666655
Q ss_pred HHHHh----HhhHhhHH-----HhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 006565 172 DQVLT----KQKAMEDQ-----VCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKA-AIV 241 (640)
Q Consensus 172 e~~~~----~~k~~~~~-----~AAGIsklK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~-a~L 241 (640)
-.++. .-.-+.+. ..-.|..++.--..+-.||.........+-++=..+..++..+..-+.....+- ...
T Consensus 108 ~~~~~~~~~KL~pl~e~g~~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~ 187 (278)
T PF15294_consen 108 KPNQETSKPKLEPLNESGGSELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSF 187 (278)
T ss_pred CccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 11110 11122233 556788888888888888888888888888888888888877776222222110 012
Q ss_pred HHhhhHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 242 QERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLEL 292 (640)
Q Consensus 242 ~er~~~~~q~r~~a~ree~~s~le~kE~kie~~k~ei~~aEq~la~~q~eL 292 (640)
..+.-..++...+|+..+|...+..++...+.+...+...-..+-..+..|
T Consensus 188 ~~q~l~dLE~k~a~lK~e~ek~~~d~~~~~k~L~e~L~~~KhelL~~QeqL 238 (278)
T PF15294_consen 188 KAQDLSDLENKMAALKSELEKALQDKESQQKALEETLQSCKHELLRVQEQL 238 (278)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhh
Confidence 222223566666677777776666666555444444444444443344433
No 194
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=89.52 E-value=41 Score=37.88 Aligned_cols=24 Identities=13% Similarity=0.083 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHH
Q 006565 480 RSRAAANAMAERLSLEVQSAQAKL 503 (640)
Q Consensus 480 e~l~e~nrrleal~~e~~~lqs~i 503 (640)
.++..+...+.....++..++..+
T Consensus 291 ~~l~~~~~~l~~~~~~l~~a~~~l 314 (457)
T TIGR01000 291 QEITDLNQKLLELESKIKSLKEDS 314 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444433
No 195
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=89.40 E-value=44 Score=40.00 Aligned_cols=44 Identities=23% Similarity=0.317 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHh
Q 006565 264 LAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEIS 307 (640)
Q Consensus 264 le~kE~kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~ 307 (640)
....+....+++.+...++...+.++...-+....-...+..|-
T Consensus 30 ~~e~e~~~~~ar~~~~~a~e~~~~lq~~~~e~~aqk~d~E~rit 73 (916)
T KOG0249|consen 30 VPELEHSLPEARKDLIKAEEMNTKLQRDIREAMAQKEDMEERIT 73 (916)
T ss_pred cHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhHHhhhcccccccc
Confidence 33344444444444444444444454444444333333333333
No 196
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=89.32 E-value=48 Score=38.41 Aligned_cols=115 Identities=13% Similarity=0.161 Sum_probs=86.5
Q ss_pred HHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 295 AESKMRSYEVEISSQKLETKELSEKLEAVNAK---AQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKK 371 (640)
Q Consensus 295 ~e~kIk~~e~ei~~le~el~~L~ekle~~~~e---ies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~ke 371 (640)
+-..+......-.++..+|..+...|--..++ ...+++++..+......+...+..-...|-.++..++..++.+..
T Consensus 314 l~~~l~k~ke~n~~L~~Eie~V~~sY~l~e~e~~~vr~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~ 393 (570)
T COG4477 314 LPDYLEKAKENNEHLKEEIERVKESYRLAETELGSVRKFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTD 393 (570)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHH
Confidence 33344445555666777777777766544444 456788888888888888888888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 006565 372 ATELADRERAEAAAARKGKSEFENLAMERMAVIERVQR 409 (640)
Q Consensus 372 a~e~~~~areead~aq~E~~elQr~~~qrlaeIerl~~ 409 (640)
+.......++.+-..|++-.+++..+...-.++.-..+
T Consensus 394 i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~eikR 431 (570)
T COG4477 394 IEDEQEKVQEHLTSLRKDELEARENLERLKSKLHEIKR 431 (570)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888888877776555544444433
No 197
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=89.24 E-value=26 Score=42.19 Aligned_cols=28 Identities=11% Similarity=0.236 Sum_probs=11.9
Q ss_pred HhhHHHhhhHHHHhhhhHHHHHHHHHHH
Q 006565 180 AMEDQVCSEIEVLKSRSTAAEARLAAAR 207 (640)
Q Consensus 180 ~~~~~~AAGIsklK~Rkkeae~RL~at~ 207 (640)
++-+.+...+..++..+..-..+|....
T Consensus 558 ~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~ 585 (717)
T PF10168_consen 558 LAREEIQRRVKLLKQQKEQQLKELQELQ 585 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444443433333
No 198
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=89.07 E-value=30 Score=35.66 Aligned_cols=56 Identities=21% Similarity=0.273 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 006565 341 KVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENL 396 (640)
Q Consensus 341 i~~L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~areead~aq~E~~elQr~ 396 (640)
+..|++++......+..+...+..+...+-.+...-..++..+..++....++...
T Consensus 80 ~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~ 135 (240)
T PF12795_consen 80 LEELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQ 135 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444444443333
No 199
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=88.98 E-value=32 Score=35.90 Aligned_cols=18 Identities=22% Similarity=0.224 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 006565 327 AQSFEREARIMEQDKVYL 344 (640)
Q Consensus 327 ies~e~el~~L~~ei~~L 344 (640)
+..+...+..+...|..+
T Consensus 89 a~~L~~~i~~l~~~i~~l 106 (264)
T PF06008_consen 89 AQDLEQFIQNLQDNIQEL 106 (264)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 200
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=88.95 E-value=25 Score=34.55 Aligned_cols=117 Identities=15% Similarity=0.238 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------HHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 214 QEEVEEWKRKYGVAVREAKAALEKAAIVQERTS-------KEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLT 286 (640)
Q Consensus 214 kDel~Ewkrky~~L~~QAKkAeek~a~L~er~~-------~~~q~r~~a~ree~~s~le~kE~kie~~k~ei~~aEq~la 286 (640)
..++.+++-++-++..+-.+...++...++-.. .+++.. ..++...++++..++..++..+...-+.++
T Consensus 5 ~~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~iDFeqLkie----n~~l~~kIeERn~eL~~Lk~~~~~~v~~L~ 80 (177)
T PF13870_consen 5 RNEISKLRLKNITLKHQLAKLEEQLRQKEELGEGLHLIDFEQLKIE----NQQLNEKIEERNKELLKLKKKIGKTVQILT 80 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777777777777777766555333221 033344 555555566666666666666666666666
Q ss_pred HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 287 TLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREA 334 (640)
Q Consensus 287 ~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el 334 (640)
..+..+.....++..+..++......+..+...+..+..+...+....
T Consensus 81 h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~ 128 (177)
T PF13870_consen 81 HVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQN 128 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666655544444444444444444444444444443333333333
No 201
>PRK10869 recombination and repair protein; Provisional
Probab=88.49 E-value=56 Score=38.08 Aligned_cols=42 Identities=12% Similarity=-0.014 Sum_probs=21.5
Q ss_pred hHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 188 EIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVR 229 (640)
Q Consensus 188 GIsklK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~ 229 (640)
|...+......+-.++..+...|..+.....+..+..+.+.-
T Consensus 151 ~~~~~~~~~~~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~f 192 (553)
T PRK10869 151 NETSLLQEMRAAYQLWHQSCRDLAQHQQQSQERAARKQLLQY 192 (553)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 445555555555555555555555554444444444444433
No 202
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=88.49 E-value=4.5 Score=35.29 Aligned_cols=66 Identities=20% Similarity=0.279 Sum_probs=45.4
Q ss_pred HHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 292 LKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEE 357 (640)
Q Consensus 292 L~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee 357 (640)
|..++.||......|..++-+|.+|.++...+..+++.....-..|.++...|.+....-..++..
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~ 71 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQA 71 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888888888889999999999999888888888874444444444444444444443333333
No 203
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=88.38 E-value=19 Score=37.47 Aligned_cols=45 Identities=22% Similarity=0.352 Sum_probs=21.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcHHH
Q 006565 387 RKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESE 432 (640)
Q Consensus 387 q~E~~elQr~~~qrlaeIerl~~qIE~lEre~e~Le~E~~~l~~sE 432 (640)
..+.+.+...+-+...+-.+....|.++..++..|..+++.++ .+
T Consensus 59 ~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R-~e 103 (230)
T PF10146_consen 59 NQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELR-KE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 3333333444433333344444445555555555555666666 44
No 204
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=88.08 E-value=35 Score=35.31 Aligned_cols=68 Identities=13% Similarity=0.304 Sum_probs=51.5
Q ss_pred HHHHHHhhHHhHHH-HHhhHHHHHHHHhHHhhhcchHHhHHhhHHhHHhhhhhhHH-HHHHHHHHHhHhh
Q 006565 112 SEYLKRYDDAINDK-KKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISD-WKRKYDQVLTKQK 179 (640)
Q Consensus 112 ~~~~k~~e~~i~d~-kk~~~~~~~~~~~l~~k~~s~ee~~~~l~k~le~~~~e~~e-w~~kYe~~~~~~k 179 (640)
.-++.-++..|+++ .++...+......+...+.+|.++|..|+..+..-+..... |-..+....++-.
T Consensus 62 ~~lq~~~e~~i~~~~~~v~~~~~~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~ 131 (247)
T PF06705_consen 62 KKLQSKFEEQINNMQERVENQISEKQEQLQSRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELN 131 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34667789999999 89999999999999999999999999999988765554433 4333333333333
No 205
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=87.86 E-value=18 Score=36.44 Aligned_cols=82 Identities=21% Similarity=0.283 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 270 EMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYK 349 (640)
Q Consensus 270 kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~ 349 (640)
.......+...+++++.....+...+++.|..++.++..++.+...+....+....++..++..+..+.+++...+.+|.
T Consensus 104 ~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~ 183 (190)
T PF05266_consen 104 DQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQ 183 (190)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555666666666677888888888888888888888888888888888888888888888888888877666
Q ss_pred HH
Q 006565 350 SE 351 (640)
Q Consensus 350 se 351 (640)
+.
T Consensus 184 ~~ 185 (190)
T PF05266_consen 184 SV 185 (190)
T ss_pred HH
Confidence 54
No 206
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=87.66 E-value=8.9 Score=39.69 Aligned_cols=81 Identities=17% Similarity=0.205 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 284 CLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCK 363 (640)
Q Consensus 284 ~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rle 363 (640)
.+..++..+.+...++.....+...+-.++..|+.+++..+.++.+++.+...|....+.+..++.....+|+++...++
T Consensus 129 ~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~E 208 (290)
T COG4026 129 EYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVE 208 (290)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccccc
Confidence 44466777788888888888888888888888888888888888888888887777777776666665555555555443
Q ss_pred H
Q 006565 364 V 364 (640)
Q Consensus 364 e 364 (640)
-
T Consensus 209 l 209 (290)
T COG4026 209 L 209 (290)
T ss_pred c
Confidence 3
No 207
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=87.62 E-value=48 Score=36.35 Aligned_cols=21 Identities=14% Similarity=0.098 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 006565 359 QERCKVAEKEAKKATELADRE 379 (640)
Q Consensus 359 ~~rleeaEee~kea~e~~~~a 379 (640)
+..++++..+|.+..++....
T Consensus 147 qlqL~~l~~e~~Ekeeesq~L 167 (401)
T PF06785_consen 147 QLQLDALQQECGEKEEESQTL 167 (401)
T ss_pred HHhHHHHHHHHhHhHHHHHHH
Confidence 344444444444444444333
No 208
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=87.17 E-value=61 Score=37.02 Aligned_cols=103 Identities=18% Similarity=0.244 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcHHH
Q 006565 353 ERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESE 432 (640)
Q Consensus 353 er~ee~~~rleeaEee~kea~e~~~~areead~aq~E~~elQr~~~qrlaeIerl~~qIE~lEre~e~Le~E~~~l~~sE 432 (640)
..+.-+.+-+.+.++.+.+-+.+-+..+-++.........+|..++.-..+-.+.-.+.-.+.+-+-.-+.++.+|. ..
T Consensus 390 k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksvsqclEmdk~LskKeeeverLQ-~l 468 (527)
T PF15066_consen 390 KTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQCLEMDKTLSKKEEEVERLQ-QL 468 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHHHHHHH-HH
Confidence 44444555566666666666666666666666666666666666643333233333444444444444444444444 33
Q ss_pred HHHHHH-----HHHHHHHHHHHHHHHHHH
Q 006565 433 LEALSK-----VALLEARVEEREKEIESL 456 (640)
Q Consensus 433 l~al~k-----v~~lE~~vee~e~eiE~L 456 (640)
.-.+++ +..|...-+.++.++=.|
T Consensus 469 kgelEkat~SALdlLkrEKe~~EqefLsl 497 (527)
T PF15066_consen 469 KGELEKATTSALDLLKREKETREQEFLSL 497 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222 555666666666666666
No 209
>KOG2037 consensus Guanylate-binding protein [General function prediction only]
Probab=86.94 E-value=0.99 Score=52.12 Aligned_cols=350 Identities=15% Similarity=0.051 Sum_probs=216.3
Q ss_pred CchHHHHHH-------HHHHhhhchHHHHHHHHHhHHHhHHHHHHhhhcCchhHHHHHHHHHHhhHHhHHHHHHHhhHHh
Q 006565 50 PGKWQKLAT-------FLQQSSEGPILDLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAI 122 (640)
Q Consensus 50 ~g~~~k~~~-------~L~~~l~~~~~d~~~~~~~~i~~~~~~l~~~c~s~~~k~~~~~k~le~~~k~~~~~~k~~e~~i 122 (640)
|-.|++|+= .|..++.+||+||.+..++....-....-. ||.+..|....++.+.....-.-.++...+++
T Consensus 188 ed~l~~l~l~~~~g~~~l~~~~~kp~q~L~~~~~~~s~~~c~~~~~--~~~~~~l~~~l~v~~~~~~el~~~r~~~~~~~ 265 (552)
T KOG2037|consen 188 EDDLQHLSLFTEYGRLALAHLFKKPFQDLKFLVRDQSFPFCSYIGE--HGGTKNLDNRLKVNGPQLEELVQLRVHARSCF 265 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHhhhhhhHHHHH--hccccccccceeecccchHHHHHHHHHHHhhc
Confidence 445555554 467889999999999999766665555544 88888888888887776654444566666777
Q ss_pred HHH-HHhhHHHHHHHHhHHhhhcchHHhHHhhHHhHHhhhhhhHHHHHHHHHHHhHhhHhhHHHhhhHHHHhhhhHHHHH
Q 006565 123 NDK-KKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEA 201 (640)
Q Consensus 123 ~d~-kk~~~~~~~~~~~l~~k~~s~ee~~~~l~k~le~~~~e~~ew~~kYe~~~~~~k~~~~~~AAGIsklK~Rkkeae~ 201 (640)
.|+ +.+.+.....-+.......++++=+....+||+ +......+..+|+.....-+
T Consensus 266 ~d~~c~~~~~~~l~~~~n~~~~~~~~~~~~~~~~ql~-~~~p~~~~q~~l~~~~~~~~---------------------- 322 (552)
T KOG2037|consen 266 EDLPCFLNPHPGLAVAENPAFDGKLEDHYNQFMGQLK-VELPNLLLQELLDEKEISGR---------------------- 322 (552)
T ss_pred cCcchhhcCchhhhcccCchhhhhHHHHHHHHHHHHh-hhhhHHhhhhhccccccCcc----------------------
Confidence 788 999999999999999999999999999999999 99999999999998766443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhhHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 006565 202 RLAAAREQALSAQEEVEEWKRKYGVAVREAKAAL--EKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIE 279 (640)
Q Consensus 202 RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAe--ek~a~L~er~~~~~q~r~~a~ree~~s~le~kE~kie~~k~ei~ 279 (640)
....-.+.||-++|+.....-..+. .....++... .+.
T Consensus 323 ---------~~t~~~~~e~fk~y~~i~q~~~g~~lp~pks~l~~~a--ea~----------------------------- 362 (552)
T KOG2037|consen 323 ---------EVTCREMKEYFKAYDKIFQKKLGETLPGPKSMLKANA--EAS----------------------------- 362 (552)
T ss_pred ---------chhHHHHHHHHHHHHHHhhHhhhhhCcCcccHHHHHH--HHh-----------------------------
Confidence 3444677889999888776333322 0111111100 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 280 HAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKEL--SEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEE 357 (640)
Q Consensus 280 ~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L--~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee 357 (640)
...+.+..+..+ ..+.++.+.= =..-..+..+++....-...+.++.... -...+.+..
T Consensus 363 -~l~~va~ak~~~--------------~~~~Eev~~G~~~~~~s~L~~~~d~~k~~a~~~~~e~rK~----ig~~e~~~~ 423 (552)
T KOG2037|consen 363 -SLAAVAAAKDIY--------------GPLMEEVKGGDIYLSPSGLNLKHDKVKELALKYFTEPRKG----IGAEEVCQR 423 (552)
T ss_pred -hHHHHHHHHHHH--------------hhhhhhhhcCceeecccHHHHHHHHHHHHHHHHHhhhhhh----hcHHHHHHH
Confidence 000111111111 1111111111 1111223334444443333333333332 333355666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHH
Q 006565 358 VQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLA-MERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEAL 436 (640)
Q Consensus 358 ~~~rleeaEee~kea~e~~~~areead~aq~E~~elQr~~-~qrlaeIerl~~qIE~lEre~e~Le~E~~~l~~sEl~al 436 (640)
-.++++....++-.....+......++.+|..+...+..+ +=..+.++.. ..|+..++.++.+....
T Consensus 424 ~lq~LE~v~~~l~~~~~~~~~s~~~~~~~r~~A~a~~~~~~~~~~~~~~~~-~~me~~a~~~~~~~~q~----------- 491 (552)
T KOG2037|consen 424 YLQSLESVEEELLQTDQALTESKKLFLAARTPAEAAAKEAILLILSGLEGF-IGMEIAARLIEETMKQL----------- 491 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhHHHhccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-----------
Confidence 6678888888888888888888889999988888877544 4444557777 77788777777665554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Q 006565 437 SKVALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQEL 510 (640)
Q Consensus 437 ~kv~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~l~e~nrrleal~~e~~~lqs~id~Leg~~ 510 (640)
+.++......++.....++...+...+..+.+....-.. .+..+++-++.++++++.+.
T Consensus 492 ---------~~~~~~~a~~~~s~~~~~l~~~v~~~~~~l~e~~~~~~~------~~~~ei~~a~~~~~~~~~~~ 550 (552)
T KOG2037|consen 492 ---------VEELETWAYVLLSEQERTLAHKVKSQEKLLWEGFSKESR------ELNLEIQEAQRMIEALKAES 550 (552)
T ss_pred ---------HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhchhh------hhhHHHHHHHHHHHhccccc
Confidence 222222222232333344445555555544444333221 16777778888888776654
No 210
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.77 E-value=47 Score=35.35 Aligned_cols=60 Identities=17% Similarity=0.324 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 282 EQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDK 341 (640)
Q Consensus 282 Eq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei 341 (640)
+..|..++.+...++.+|..+.+.+..+..++..+..+....+.++..++.+|..++.+|
T Consensus 37 ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I 96 (265)
T COG3883 37 DSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENI 96 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334333333333333333333333333333334444444443333333
No 211
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=86.64 E-value=40 Score=38.26 Aligned_cols=30 Identities=20% Similarity=0.299 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 312 ETKELSEKLEAVNAKAQSFEREARIMEQDK 341 (640)
Q Consensus 312 el~~L~ekle~~~~eies~e~el~~L~~ei 341 (640)
++......++.+..+..+++.+...+....
T Consensus 348 qlen~k~~~e~~~~e~~~l~~~~~~~e~~k 377 (493)
T KOG0804|consen 348 QLENQKQYYELLITEADSLKQESSDLEAEK 377 (493)
T ss_pred HHHhHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 333333333333333333333333333333
No 212
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=86.26 E-value=32 Score=37.39 Aligned_cols=30 Identities=23% Similarity=0.350 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 261 SSTLAEKEEEMKEKATKIEHAEQCLTTLRL 290 (640)
Q Consensus 261 ~s~le~kE~kie~~k~ei~~aEq~la~~q~ 290 (640)
..+..|++.++..++.++..++..+...+.
T Consensus 169 ~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~ 198 (362)
T TIGR01010 169 KDTIAFAENEVKEAEQRLNATKAELLKYQI 198 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666667777777777766666654
No 213
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=86.25 E-value=57 Score=35.81 Aligned_cols=80 Identities=11% Similarity=0.141 Sum_probs=40.9
Q ss_pred HHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 291 ELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAK 370 (640)
Q Consensus 291 eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~k 370 (640)
.+.+...+...+..--..+..++....+=.-..+.+.+.++.-+..++++...++-++.+......+..++-..+..++.
T Consensus 93 s~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELa 172 (401)
T PF06785_consen 93 SVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELA 172 (401)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHH
Confidence 33333334444444444445555555555555555666666666666666666665555555544444444444433433
No 214
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=86.21 E-value=60 Score=37.49 Aligned_cols=91 Identities=16% Similarity=0.246 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 272 KEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSE 351 (640)
Q Consensus 272 e~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se 351 (640)
......+...-+.|+....+++....++..+.+.+-.++..++.+....+.+..-+..+..--..+..+..+++.++...
T Consensus 208 rdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~ 287 (596)
T KOG4360|consen 208 RDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAEC 287 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 33334444444444555555555555555555555555555555555555555555555555555555555554444444
Q ss_pred HHHHHHHHHHH
Q 006565 352 FERFEEVQERC 362 (640)
Q Consensus 352 ~er~ee~~~rl 362 (640)
.+.|.+.++.+
T Consensus 288 m~~~~EaeeEL 298 (596)
T KOG4360|consen 288 MQMLHEAEEEL 298 (596)
T ss_pred HHHHHHHHHHH
Confidence 44444433333
No 215
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=86.12 E-value=39 Score=40.55 Aligned_cols=35 Identities=20% Similarity=0.282 Sum_probs=29.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 257 REEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLE 291 (640)
Q Consensus 257 ree~~s~le~kE~kie~~k~ei~~aEq~la~~q~e 291 (640)
......+++|++.++..++.++..+|..+...+..
T Consensus 262 ~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~ 296 (726)
T PRK09841 262 AAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQ 296 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667778999999999999999999998888664
No 216
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=85.94 E-value=14 Score=43.23 Aligned_cols=102 Identities=18% Similarity=0.267 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhHHHHhhhcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 411 IESLERQKTDLTNEVNRIRESELEALSK-VALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMA 489 (640)
Q Consensus 411 IE~lEre~e~Le~E~~~l~~sEl~al~k-v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~l~e~nrrl 489 (640)
+..++..++.|+.+...|. .++..+.+ +..|+++++.+..++..= ....-.+..++..|..++..|.+..++.
T Consensus 424 i~~~~~~ve~l~~e~~~L~-~~~ee~k~eie~L~~~l~~~~r~~~~~-----~~~~rei~~~~~~I~~L~~~L~e~~~~v 497 (652)
T COG2433 424 IKKLEETVERLEEENSELK-RELEELKREIEKLESELERFRREVRDK-----VRKDREIRARDRRIERLEKELEEKKKRV 497 (652)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444 44444445 666666666665554421 1123344455555666666666666666
Q ss_pred HHhhHHHHHHHHHHHH-HHHHhhhhhcccc
Q 006565 490 ERLSLEVQSAQAKLDE-MQQELTKARLNET 518 (640)
Q Consensus 490 eal~~e~~~lqs~id~-Leg~~~~~~~~et 518 (640)
+.|...+..+..+-.. +.|--+||---|+
T Consensus 498 e~L~~~l~~l~k~~~lE~sG~g~pvk~ve~ 527 (652)
T COG2433 498 EELERKLAELRKMRKLELSGKGTPVKVVEK 527 (652)
T ss_pred HHHHHHHHHHHHHHhhhhcCCCcceehhhh
Confidence 6666666666633332 2355445444443
No 217
>PRK11519 tyrosine kinase; Provisional
Probab=85.88 E-value=48 Score=39.74 Aligned_cols=35 Identities=29% Similarity=0.385 Sum_probs=29.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 257 REEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLE 291 (640)
Q Consensus 257 ree~~s~le~kE~kie~~k~ei~~aEq~la~~q~e 291 (640)
......+++|++.++..++.++..+|..++..+..
T Consensus 262 ~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~ 296 (719)
T PRK11519 262 SEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQD 296 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677789999999999999999999999888664
No 218
>PRK10884 SH3 domain-containing protein; Provisional
Probab=85.78 E-value=13 Score=38.01 Aligned_cols=58 Identities=21% Similarity=0.370 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHhHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 006565 409 RQIESLERQKTDLTNEVNRIRESELEALSKVALLEARVEEREKEIESLLESNNEQRASTVKK 470 (640)
Q Consensus 409 ~qIE~lEre~e~Le~E~~~l~~sEl~al~kv~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~ 470 (640)
.++..+++++..+..+...++ ++.+ .....+...++..+..+.+| ..++.++..++..
T Consensus 93 ~rlp~le~el~~l~~~l~~~~-~~~~--~~~~~l~~~~~~~~~~~~~L-~~~n~~L~~~l~~ 150 (206)
T PRK10884 93 TRVPDLENQVKTLTDKLNNID-NTWN--QRTAEMQQKVAQSDSVINGL-KEENQKLKNQLIV 150 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hHHH--HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 344555555555555555554 3322 11344444444444444444 4444444444433
No 219
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=85.73 E-value=38 Score=33.30 Aligned_cols=131 Identities=18% Similarity=0.329 Sum_probs=84.3
Q ss_pred HHHHHHHHhhhchHHHHHHHHHhHHHhHHHHHHhhhcCchhHHHHHHHHHHhhH---HhHHHHHHHhhHHhH---HH-HH
Q 006565 55 KLATFLQQSSEGPILDLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSE---RYKSEYLKRYDDAIN---DK-KK 127 (640)
Q Consensus 55 k~~~~L~~~l~~~~~d~~~~~~~~i~~~~~~l~~~c~s~~~k~~~~~k~le~~~---k~~~~~~k~~e~~i~---d~-kk 127 (640)
-|+..+..+=..++..+.=+.++....+++ +...++..+..+..|....+.++ .....+++.++.-+. |- ..
T Consensus 11 EfE~lId~~G~e~v~~LmP~VV~vLE~Le~-~~~~n~~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~~~~ 89 (158)
T PF09744_consen 11 EFERLIDRYGEEAVKGLMPKVVRVLELLES-LASRNQEHEVELELLREDNEQLETQYEREKELRKQAEEELLELEDQWRQ 89 (158)
T ss_pred HHHHHHHHhChhHHHHHHHHHHHHHHHHHH-HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666677777777777777754 55566788888888776555554 455556666664333 22 44
Q ss_pred hhHHHHHHHHhHHhhhcchHHhHHhhHHhHHhhhhhhHHHHHHHHHHHhHhhHhhHHHh
Q 006565 128 LADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVC 186 (640)
Q Consensus 128 ~~~~~~~~~~~l~~k~~s~ee~~~~l~k~le~~~~e~~ew~~kYe~~~~~~k~~~~~~A 186 (640)
-..++.+.+..|+..++.|+-++.+++.+.......-.+|++.|...-..+..+--.|.
T Consensus 90 e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~er~~e~l~~~~ 148 (158)
T PF09744_consen 90 ERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLHERERELLRKLK 148 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666677677777777766777777788888776665554443333
No 220
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=85.26 E-value=25 Score=30.79 Aligned_cols=102 Identities=19% Similarity=0.245 Sum_probs=41.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-----HHHhhhcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhh
Q 006565 387 RKGKSEFENLAMERMAVIERVQRQIESLERQKTDLT-----NEVNRIRESELEALSK-VALLEARVEEREKEIESLLESN 460 (640)
Q Consensus 387 q~E~~elQr~~~qrlaeIerl~~qIE~lEre~e~Le-----~E~~~l~~sEl~al~k-v~~lE~~vee~e~eiE~L~~~~ 460 (640)
+..+..+++.......++..+...+..+...+.... .+..... .-+..+.. +......+...+.+++.. ...
T Consensus 4 ~~~l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~-~~~~~l~~~i~~~~~~~~~~~~~~~~~-r~~ 81 (123)
T PF02050_consen 4 EQELAEAQQELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQ-RYISALEQAIQQQQQELERLEQEVEQA-REE 81 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 333444444444444444444444444444443333 2222222 22333333 444444444444444444 444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 461 NEQRASTVKKLEDLLESERRSRAAANAMAE 490 (640)
Q Consensus 461 ~eq~~~~l~~le~~le~~re~l~e~nrrle 490 (640)
...-...+..++.+++...........+.+
T Consensus 82 l~~a~~~~k~~e~L~e~~~~~~~~~~~r~E 111 (123)
T PF02050_consen 82 LQEARRERKKLEKLKERRREEYQQEEERRE 111 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555544444444444433
No 221
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=85.06 E-value=45 Score=33.52 Aligned_cols=95 Identities=16% Similarity=0.192 Sum_probs=53.4
Q ss_pred HHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 292 LKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKK 371 (640)
Q Consensus 292 L~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~ke 371 (640)
|..+..||+.++-+...++..++.|...- ..|..-+..-..+...-. ......-..+...+..|+.+|.-
T Consensus 6 LK~LQeKIrrLELER~qAe~nl~~LS~et-------~~yk~vl~~~~~~~~~~~---~e~~~q~~dl~~qL~aAEtRCsl 75 (178)
T PF14073_consen 6 LKNLQEKIRRLELERSQAEDNLKQLSRET-------SHYKKVLQSEQNERERAH---QELSKQNQDLSSQLSAAETRCSL 75 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHH-------HHhHHHHHHHhhhhhccc---chhhhccHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666555543 333322221111111111 11112244567778888888888
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHH
Q 006565 372 ATELADRERAEAAAARKGKSEFENL 396 (640)
Q Consensus 372 a~e~~~~areead~aq~E~~elQr~ 396 (640)
.+.+++.++..+..+..|...+-..
T Consensus 76 LEKQLeyMRkmv~~ae~er~~~le~ 100 (178)
T PF14073_consen 76 LEKQLEYMRKMVESAEKERNAVLEQ 100 (178)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 8888888888887777665554433
No 222
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=84.93 E-value=42 Score=33.09 Aligned_cols=123 Identities=18% Similarity=0.288 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 006565 319 KLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKV-AEKEAKKATELADRERAEAAAARKGKSEFENLA 397 (640)
Q Consensus 319 kle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rlee-aEee~kea~e~~~~areead~aq~E~~elQr~~ 397 (640)
.++.+..++.....++...-.+.+.|+........++.++...|.. .++.++.|.+.+...+-.+...|..-..
T Consensus 28 E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~re~E~q----- 102 (159)
T PF05384_consen 28 EYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLREREKQ----- 102 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 3444445555555555555555555555556666666666666654 3555666666665554444444433333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 006565 398 MERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSK-VALLEARVEEREKEIESL 456 (640)
Q Consensus 398 ~qrlaeIerl~~qIE~lEre~e~Le~E~~~l~~sEl~al~k-v~~lE~~vee~e~eiE~L 456 (640)
|+..-+.|++++.++..-+.+-. .=...+.- +..|...+...-..++++
T Consensus 103 ---------Lr~rRD~LErrl~~l~~tierAE-~l~sqi~vvl~yL~~dl~~v~~~~e~~ 152 (159)
T PF05384_consen 103 ---------LRERRDELERRLRNLEETIERAE-NLVSQIGVVLNYLSGDLQQVSEQIEDA 152 (159)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 33444555555555555454444 33444444 566666666666666655
No 223
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=84.86 E-value=1.3e+02 Score=38.86 Aligned_cols=46 Identities=20% Similarity=0.257 Sum_probs=31.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 306 ISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSE 351 (640)
Q Consensus 306 i~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se 351 (640)
-..=..+|..|..++..+..++..+..++..+...+..|...+.+.
T Consensus 737 ~~~R~~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~~~ 782 (1353)
T TIGR02680 737 ERARLRRIAELDARLAAVDDELAELARELRALGARQRALADELAGA 782 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3444566777777777777777777777777777777776665544
No 224
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=84.81 E-value=74 Score=35.85 Aligned_cols=27 Identities=11% Similarity=0.172 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 394 ENLAMERMAVIERVQRQIESLERQKTD 420 (640)
Q Consensus 394 Qr~~~qrlaeIerl~~qIE~lEre~e~ 420 (640)
...+.+..+++..++.++..++..+..
T Consensus 290 ~~~l~~~~~~l~~~~~~l~~a~~~l~~ 316 (457)
T TIGR01000 290 KQEITDLNQKLLELESKIKSLKEDSQK 316 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 334444444455555555555555443
No 225
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=84.64 E-value=42 Score=34.95 Aligned_cols=49 Identities=10% Similarity=0.120 Sum_probs=27.6
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhc
Q 006565 381 AEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIR 429 (640)
Q Consensus 381 eead~aq~E~~elQr~~~qrlaeIerl~~qIE~lEre~e~Le~E~~~l~ 429 (640)
.+.+....|....-..+-++.++|..++..|..++.+.+.....+.++.
T Consensus 39 kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~ 87 (230)
T PF10146_consen 39 KEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLY 87 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444555556666666666666666666666555555555
No 226
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=84.53 E-value=50 Score=33.67 Aligned_cols=126 Identities=12% Similarity=0.213 Sum_probs=76.3
Q ss_pred HHHHhhHHhHHHHHhhHHHHHHHHhHHhhhcchHHhHHhhHHhHHhhhhhhHHHHHHHHHHHhHhhHhhHHHhhhHHHHh
Q 006565 114 YLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLK 193 (640)
Q Consensus 114 ~~k~~e~~i~d~kk~~~~~~~~~~~l~~k~~s~ee~~~~l~k~le~~~~e~~ew~~kYe~~~~~~k~~~~~~AAGIsklK 193 (640)
+....++|+--+.-.+.++...+...+.-+-..==..-.+..+++.......+|..+=..++..-. +++|-..-
T Consensus 18 ~~dk~EDP~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~---EdLAr~Al--- 91 (219)
T TIGR02977 18 LLDKAEDPEKMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGR---EDLARAAL--- 91 (219)
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---HHHHHHHH---
Confidence 333444454444444444444444444433333334445677788889999999999988887443 44444443
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006565 194 SRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERT 245 (640)
Q Consensus 194 ~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a~L~er~ 245 (640)
.++............+++.....+...+.++..|..+-..+..+...|.-+.
T Consensus 92 ~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~ 143 (219)
T TIGR02977 92 IEKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRH 143 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666666666666667777777777777777666666666665555555554
No 227
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=84.36 E-value=22 Score=38.46 Aligned_cols=86 Identities=16% Similarity=0.169 Sum_probs=61.1
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 305 EISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAA 384 (640)
Q Consensus 305 ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~areead 384 (640)
-+..+...+..+++++..+=---..+.++-..|.++++.|..+++...+.|......+.+.-.++...+..++..+.+++
T Consensus 78 s~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~ 157 (302)
T PF09738_consen 78 SLRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELD 157 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555888889999998888877888888888888888888888777777777777776655555555555555544444
Q ss_pred HHHhhH
Q 006565 385 AARKGK 390 (640)
Q Consensus 385 ~aq~E~ 390 (640)
.++.++
T Consensus 158 ~Lre~L 163 (302)
T PF09738_consen 158 ELREQL 163 (302)
T ss_pred HHHHHH
Confidence 444443
No 228
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=84.01 E-value=40 Score=32.13 Aligned_cols=27 Identities=15% Similarity=0.287 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 392 EFENLAMERMAVIERVQRQIESLERQK 418 (640)
Q Consensus 392 elQr~~~qrlaeIerl~~qIE~lEre~ 418 (640)
.++....+...+|-+.+..|++|..++
T Consensus 123 ~~~~~~tq~~~e~rkke~E~~kLk~rL 149 (151)
T PF11559_consen 123 QLQQRKTQYEHELRKKEREIEKLKERL 149 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334555666666666666666666554
No 229
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=83.15 E-value=94 Score=35.71 Aligned_cols=97 Identities=16% Similarity=0.198 Sum_probs=56.0
Q ss_pred HHHHHHHhHHhhhcchHHhHHhhHHhHHhhhhhhHHHHHHHHHHHhHhhHhhHHHhhhHHHHhhhhHHHHHHHHHHHHHH
Q 006565 131 DYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQA 210 (640)
Q Consensus 131 ~~~~~~~~l~~k~~s~ee~~~~l~k~le~~~~e~~ew~~kYe~~~~~~k~~~~~~AAGIsklK~Rkkeae~RL~at~enL 210 (640)
.+-.++..|.....-|.+++..-.|.=...+ .-..||-. -+.++..|-+-++-+|.++.+-.+.++....+.
T Consensus 268 ~i~~~i~~lk~~n~~l~e~i~ea~k~s~~i~----~l~ek~r~----l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~ei 339 (622)
T COG5185 268 IINTDIANLKTQNDNLYEKIQEAMKISQKIK----TLREKWRA----LKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEI 339 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH----HhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 3445666666666667776666555433222 12223322 233344455555566666666677777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 211 LSAQEEVEEWKRKYGVAVREAKAAL 235 (640)
Q Consensus 211 ~RVkDel~Ewkrky~~L~~QAKkAe 235 (640)
.-++.++.-.+.|.+.|..|..+-.
T Consensus 340 e~kEeei~~L~~~~d~L~~q~~kq~ 364 (622)
T COG5185 340 ELKEEEIKALQSNIDELHKQLRKQG 364 (622)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHhcC
Confidence 7777777777777777766655443
No 230
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=82.61 E-value=78 Score=34.40 Aligned_cols=17 Identities=6% Similarity=0.165 Sum_probs=8.2
Q ss_pred HhhhhHHHHHHHHHHHH
Q 006565 192 LKSRSTAAEARLAAARE 208 (640)
Q Consensus 192 lK~Rkkeae~RL~at~e 208 (640)
|.=-|.++.++.+.-+.
T Consensus 68 Y~~sC~EL~~~I~egr~ 84 (312)
T smart00787 68 YQFSCKELKKYISEGRD 84 (312)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455555555444443
No 231
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=82.55 E-value=77 Score=34.30 Aligned_cols=28 Identities=25% Similarity=0.464 Sum_probs=19.8
Q ss_pred hHHhHHhhHHhHHhhhhhhHHHHHHHHH
Q 006565 146 LREKSSSLSKTVDSLKNEISDWKRKYDQ 173 (640)
Q Consensus 146 ~ee~~~~l~k~le~~~~e~~ew~~kYe~ 173 (640)
|-+.++.|.-.+|..+....+=-++|=.
T Consensus 4 Lq~eia~LrlEidtik~q~qekE~ky~e 31 (305)
T PF14915_consen 4 LQDEIAMLRLEIDTIKNQNQEKEKKYLE 31 (305)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4566777777778887777777667644
No 232
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=82.53 E-value=79 Score=34.45 Aligned_cols=44 Identities=20% Similarity=0.228 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006565 202 RLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERT 245 (640)
Q Consensus 202 RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a~L~er~ 245 (640)
||..=-.-|.-+...+.+.+.++....-+-.........+-..+
T Consensus 2 rl~~GL~KL~et~~~V~~m~~~L~~~~~~L~~k~~e~e~ll~~i 45 (344)
T PF12777_consen 2 RLENGLDKLKETEEQVEEMQEELEEKQPELEEKQKEAEELLEEI 45 (344)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555555555554444444443333
No 233
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=82.47 E-value=1.3e+02 Score=36.95 Aligned_cols=46 Identities=22% Similarity=0.171 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Q 006565 465 ASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQEL 510 (640)
Q Consensus 465 ~~~l~~le~~le~~re~l~e~nrrleal~~e~~~lqs~id~Leg~~ 510 (640)
-.++-.+...-.++...+.+..+.=-.++.=.+++...|..++..-
T Consensus 810 g~~~a~lr~~~~slk~~l~e~ar~Wasl~~~~~vl~e~l~~~ke~r 855 (984)
T COG4717 810 GGTVAELRQRRESLKEDLEEKARKWASLRLAVQVLEEALRLFKERR 855 (984)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3466666777777777777777777777776666666666654433
No 234
>PF13166 AAA_13: AAA domain
Probab=82.44 E-value=1.1e+02 Score=36.11 Aligned_cols=46 Identities=15% Similarity=0.302 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Q 006565 465 ASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQEL 510 (640)
Q Consensus 465 ~~~l~~le~~le~~re~l~e~nrrleal~~e~~~lqs~id~Leg~~ 510 (640)
...+..++..+......+...+..+.++..++..+..-++.+-.++
T Consensus 423 ~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~iN~~L 468 (712)
T PF13166_consen 423 EKEINSLEKKLKKAKEEIKKIEKEIKELEAQLKNTEPAADRINEEL 468 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444433333
No 235
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=82.18 E-value=2.6 Score=45.76 Aligned_cols=116 Identities=16% Similarity=0.291 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 006565 403 VIERVQRQIESLERQKTDLTNEVNRIRESELEALSK-VALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRS 481 (640)
Q Consensus 403 eIerl~~qIE~lEre~e~Le~E~~~l~~sEl~al~k-v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~ 481 (640)
.|..+...+-.++-.+.++...+..+. .++..+.. |..+..-|..+...+..| ........+.|..+...+..+...
T Consensus 50 SVs~lss~iSdLss~L~~l~~sl~~~~-s~L~sLsstV~~lq~Sl~~lsssVs~l-S~~ls~h~ssIS~Lqs~v~~lsTd 127 (326)
T PF04582_consen 50 SVSSLSSTISDLSSDLQDLASSLADMT-SELNSLSSTVTSLQSSLSSLSSSVSSL-SSTLSDHSSSISDLQSSVSALSTD 127 (326)
T ss_dssp ----------------------------------------------------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhHHhh-hhhhhhhhhhHHHHHHhhhhhhhh
Confidence 344444445555555555555556666 66666666 666666666666667766 666666788888888888888888
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHH-------hhhhhcccccc
Q 006565 482 RAAANAMAERLSLEVQSAQAKLDEMQQE-------LTKARLNETAL 520 (640)
Q Consensus 482 l~e~nrrleal~~e~~~lqs~id~Leg~-------~~~~~~~et~l 520 (640)
+.-...-+....+.+..+++.|..||+- ..|.+++.-.+
T Consensus 128 vsNLksdVSt~aL~ItdLe~RV~~LEs~~s~~l~f~~PL~~~~g~v 173 (326)
T PF04582_consen 128 VSNLKSDVSTQALNITDLESRVKALESGSSSPLTFSAPLKLDDGVV 173 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT-EE-TTEEECTTEE
T ss_pred hhhhhhhhhhhcchHhhHHHHHHHHhcCCCCCceecCCeEecCCEE
Confidence 8888889999999999999999998764 44555554433
No 236
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=82.18 E-value=73 Score=33.79 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHH
Q 006565 281 AEQCLTTLRLELKAAESKMRSYEVEI 306 (640)
Q Consensus 281 aEq~la~~q~eL~e~e~kIk~~e~ei 306 (640)
..+....++.+|+++..--+.++.++
T Consensus 25 ykq~f~~~reEl~EFQegSrE~Eael 50 (333)
T KOG1853|consen 25 YKQHFLQMREELNEFQEGSREIEAEL 50 (333)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 34566677888888887777776653
No 237
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=81.52 E-value=1.1e+02 Score=35.43 Aligned_cols=110 Identities=11% Similarity=0.138 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 264 LAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVY 343 (640)
Q Consensus 264 le~kE~kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~ 343 (640)
-+|...-|.....++...--.+.+.+++|..+......+..++..|..+|-.+..+..-+.-+-+.+..-+....+.=..
T Consensus 193 ~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~q 272 (596)
T KOG4360|consen 193 EEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQ 272 (596)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 34444455566666666666777777777777777777777777777777777777666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 344 LEQKYKSEFERFEEVQERCKVAEKEAKKAT 373 (640)
Q Consensus 344 L~ekl~se~er~ee~~~rleeaEee~kea~ 373 (640)
++........+|.+....+.+++++++.++
T Consensus 273 l~aE~~EleDkyAE~m~~~~EaeeELk~lr 302 (596)
T KOG4360|consen 273 LTAELEELEDKYAECMQMLHEAEEELKCLR 302 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 666666666666666666666666655544
No 238
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=80.72 E-value=54 Score=31.28 Aligned_cols=78 Identities=28% Similarity=0.423 Sum_probs=36.5
Q ss_pred HHHHHHhHHHHhhhcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006565 415 ERQKTDLTNEVNRIRESELEALSK-VALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLS 493 (640)
Q Consensus 415 Ere~e~Le~E~~~l~~sEl~al~k-v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~l~e~nrrleal~ 493 (640)
-...+.+...+.+++ +++..+.. +..++..+++.+.++..+ .....++...+..+...+..+++.+......+....
T Consensus 51 ~~~~e~l~~~~~~l~-~d~~~l~~~~~rL~~~~~~~ere~~~~-~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~ 128 (151)
T PF11559_consen 51 MEQREDLSDKLRRLR-SDIERLQNDVERLKEQLEELERELASA-EEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRK 128 (151)
T ss_pred HHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444 44444444 444555555555555544 444444455555555555555554444444444333
Q ss_pred H
Q 006565 494 L 494 (640)
Q Consensus 494 ~ 494 (640)
.
T Consensus 129 t 129 (151)
T PF11559_consen 129 T 129 (151)
T ss_pred H
Confidence 3
No 239
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=79.82 E-value=1.1e+02 Score=34.42 Aligned_cols=214 Identities=14% Similarity=0.214 Sum_probs=110.0
Q ss_pred HHhhHHHHHHHHhHHhhhcchHHhHHhhHHhHHhhhhhhHHHHHHHHHHH-hHhhHhhHHHhhhHHHHhhhhHHHHHHHH
Q 006565 126 KKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVL-TKQKAMEDQVCSEIEVLKSRSTAAEARLA 204 (640)
Q Consensus 126 kk~~~~~~~~~~~l~~k~~s~ee~~~~l~k~le~~~~e~~ew~~kYe~~~-~~~k~~~~~~AAGIsklK~Rkkeae~RL~ 204 (640)
..+.+........++....++.++...+...+..++.....++..+.-.- ....- .+...+.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~l~~lr~~~~~ae~~~~~~~~~~~l~~~~~~~~-----------------~~~~~~~ 242 (458)
T COG3206 180 AYLADQLEAQLEAFRRASDSLDERLEELRARLQEAEAQVEDFRAQHGLTDAARGQL-----------------LSEQQLS 242 (458)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchh-----------------HHHHHHH
Confidence 34556666677778888888999999999999999999888887665433 22222 2334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHh-hhHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 006565 205 AAREQALSAQEEVEEWKRKYGVAVREAKAAL---EKAAIVQER-TSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEH 280 (640)
Q Consensus 205 at~enL~RVkDel~Ewkrky~~L~~QAKkAe---ek~a~L~er-~~~~~q~r~~a~ree~~s~le~kE~kie~~k~ei~~ 280 (640)
+...++..++-.......-+..+..+...-. .-...+.+. ++ .+..+ +.+...++..+-..+-..+-.+..
T Consensus 243 ~ln~ql~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~s~~i~-~Lr~~----~~~~~~~~~~l~~~~~~~~p~~~~ 317 (458)
T COG3206 243 ALNTQLQSARARLAQAEARLASLLQLLPLGREAAALREVLESPTIQ-DLRQQ----YAQVRQQIADLSTELGAKHPQLVA 317 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHhccHHHH-HHHHH----HHHHHHHHHHHHHhhcccChHHHh
Confidence 5555555555555555555554444333222 011112222 11 22222 233333333333333333334444
Q ss_pred HHHHHHHHHHHH-HHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 281 AEQCLTTLRLEL-KAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQ 359 (640)
Q Consensus 281 aEq~la~~q~eL-~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~ 359 (640)
....+..++..+ .+...=+..+.++...++.+...|..+...++.+...+ ..+..+..+|+-++.....-|+..-
T Consensus 318 ~~~q~~~~~~~~~~e~~~~~~~~~~~~~~l~~~~~~L~~~~~~l~~~~~~~----~~~~~~l~~L~Re~~~~r~~ye~lL 393 (458)
T COG3206 318 LEAQLAELRQQIAAELRQILASLPNELALLEQQEAALEKELAQLKGRLSKL----PKLQVQLRELEREAEAARSLYETLL 393 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHhhc----hHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 444444443333 33333344555566667777777766666665555433 2333444444444444455555544
Q ss_pred HHHHHH
Q 006565 360 ERCKVA 365 (640)
Q Consensus 360 ~rleea 365 (640)
.+++++
T Consensus 394 ~r~qe~ 399 (458)
T COG3206 394 QRYQEL 399 (458)
T ss_pred HHHHHH
Confidence 444443
No 240
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=79.77 E-value=57 Score=30.98 Aligned_cols=140 Identities=15% Similarity=0.129 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 006565 312 ETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKS 391 (640)
Q Consensus 312 el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~areead~aq~E~~ 391 (640)
+|..|......+.+-+.++.. ...+...+..+.......-+...+...++.+...++......+..+.........+..
T Consensus 8 eL~~Ll~d~~~l~~~v~~l~~-~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~ 86 (150)
T PF07200_consen 8 ELQELLSDEEKLDAFVKSLPQ-VQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQD 86 (150)
T ss_dssp HHHHHHHH-HHHHHHGGGGS---HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCHHHHHHHHHcCHH-HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444443333222 3334444444444444444444444455555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 006565 392 EFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSK-VALLEARVEEREKEIE 454 (640)
Q Consensus 392 elQr~~~qrlaeIerl~~qIE~lEre~e~Le~E~~~l~~sEl~al~k-v~~lE~~vee~e~eiE 454 (640)
.+.... .-.+-..+++..+..++.+.+.+....-.=. ..++.|-+ +...-..-..|....|
T Consensus 87 ~l~~~~-s~~~l~~~L~~~~~e~eeeSe~lae~fl~g~-~d~~~Fl~~f~~~R~~yH~R~~K~E 148 (150)
T PF07200_consen 87 ELSSNY-SPDALLARLQAAASEAEEESEELAEEFLDGE-IDVDDFLKQFKEKRKLYHLRRAKEE 148 (150)
T ss_dssp HHHHCH-HHHHHHHHHHHHHHHHHHHHHHHC-S-SSSH-HHHHHHHHHHHHHHHHHHHHH---H
T ss_pred HHHccC-CHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHHHHhhhc
Confidence 553333 2233356777777888888777755554434 44556655 5555554444444333
No 241
>PF12949 HeH: HeH/LEM domain; PDB: 2OUT_A.
Probab=79.67 E-value=1.2 Score=33.14 Aligned_cols=33 Identities=33% Similarity=0.513 Sum_probs=20.8
Q ss_pred hHhhHHHHHHHHHhcCchhhhhhccCCChHHHHHHHH
Q 006565 597 TKFTVQKLKQELTKHNFGAELLQLRNPNKKEILALYE 633 (640)
Q Consensus 597 ~k~t~~kl~~el~~~~~g~~l~~l~~~~k~~i~aly~ 633 (640)
.++||..||..|++||..- =.|.+|-|+++|++
T Consensus 2 ~sltV~~Lk~iL~~~~I~~----ps~AkKaeLv~L~~ 34 (35)
T PF12949_consen 2 KSLTVAQLKRILDEHGIEF----PSNAKKAELVALFN 34 (35)
T ss_dssp TT--SHHHHHHHHHHT-------SSS--SHHHHHH--
T ss_pred CcCcHHHHHHHHHHcCCCC----CCCCCHHHHHHHHc
Confidence 4689999999999999642 13788999999976
No 242
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=79.66 E-value=1.1e+02 Score=34.78 Aligned_cols=70 Identities=19% Similarity=0.179 Sum_probs=38.7
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 277 KIEHAEQ-CLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQ 346 (640)
Q Consensus 277 ei~~aEq-~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~e 346 (640)
.+...++ ++..++..+..+..+.+.+..+...++..-+.+..++..+..++....++++.++..-.-|..
T Consensus 340 ~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~k 410 (493)
T KOG0804|consen 340 IMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIK 410 (493)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333344 666666666666655555555555555555555555555555555555555555544444433
No 243
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=79.46 E-value=1.2e+02 Score=34.45 Aligned_cols=260 Identities=15% Similarity=0.174 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHH
Q 006565 253 EDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKE-LSEKLEAVNAKAQSFE 331 (640)
Q Consensus 253 ~~a~ree~~s~le~kE~kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~-L~ekle~~~~eies~e 331 (640)
.||-+.++..+++..+..-..-..++...+..+..+...+...-..--..-.+-..-+..-+. -...+.++.--+.+++
T Consensus 150 ~da~~qq~~~ele~~d~~~~~d~ee~kqlEe~ieeL~qsl~kd~~~~~~l~~e~n~~k~s~~s~~~k~l~al~llv~tLe 229 (446)
T KOG4438|consen 150 LDAKYQQALKELERFDEDVEEDEEEVKQLEENIEELNQSLLKDFNQQMSLLAEYNKMKKSSTSEKNKILNALKLLVVTLE 229 (446)
T ss_pred HHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 006565 332 REARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQI 411 (640)
Q Consensus 332 ~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~areead~aq~E~~elQr~~~qrlaeIerl~~qI 411 (640)
....-|+..|.+-=+++....+.+.-+-.....+-.++.+...-....-+-+.....|...+++.+....-+..++ ..+
T Consensus 230 e~~~~LktqIV~sPeKL~~~leemk~~l~k~k~~~~~l~~K~~iL~ekv~~~qti~~e~~~~lk~i~~~~~e~d~~-Et~ 308 (446)
T KOG4438|consen 230 ENANCLKTQIVQSPEKLKEALEEMKDLLQKEKSAMVELQEKAKILEEKVTNLQTIEKELKALLKKISSDGVEYDSL-ETK 308 (446)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhhhhhhhh-HHH
Q ss_pred HHHHHHHHHhHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 412 ESLERQKTDLTNEVNRIRESELEALSKVALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAER 491 (640)
Q Consensus 412 E~lEre~e~Le~E~~~l~~sEl~al~kv~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~l~e~nrrlea 491 (640)
...-++.-.|+..+.-.. +|+..+.....+-.++.....+.+.. .++...+.. +...+.++...+..++....-++
T Consensus 309 ~v~lke~~~Le~q~e~~~-~e~~~lk~~e~~~kqL~~~~kek~~~-~Qd~~~r~~--E~v~~~md~~~~~~n~V~~kr~a 384 (446)
T KOG4438|consen 309 VVELKEILELEDQIELNQ-LELEKLKMFENLTKQLNELKKEKESR-RQDLENRKT--ESVKAMMDDNIEKYNVVRQKRNA 384 (446)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhH--HHHHHHHHHHHHHhcccchhhcc
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhccc
Q 006565 492 LSLEVQSAQAKLDEMQQELTKARLNE 517 (640)
Q Consensus 492 l~~e~~~lqs~id~Leg~~~~~~~~e 517 (640)
+.-.+..--..+...+.|+.-++.-+
T Consensus 385 ~~~kie~~~~~ik~~e~~l~~~~~r~ 410 (446)
T KOG4438|consen 385 KVKKIEEKNEEIKKIELFLEIARGRE 410 (446)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHH
No 244
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=79.30 E-value=29 Score=29.82 Aligned_cols=68 Identities=18% Similarity=0.335 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Q 006565 442 LEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQEL 510 (640)
Q Consensus 442 lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~l~e~nrrleal~~e~~~lqs~id~Leg~~ 510 (640)
++..|.+.+..|..| ..+-+.+..+...+...|..+|....+....+..++..+..+...++.++.++
T Consensus 3 l~~~l~EKDe~Ia~L-~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l 70 (74)
T PF12329_consen 3 LEKKLAEKDEQIAQL-MEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERL 70 (74)
T ss_pred HHHHHHhHHHHHHHH-HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555 55555556666666666666666666666677766666667777777766654
No 245
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=79.19 E-value=3.3 Score=30.39 Aligned_cols=34 Identities=26% Similarity=0.448 Sum_probs=27.3
Q ss_pred hhHhhHHHHHHHHHhcCchhhhhhccCCChHHHHHHHHHh
Q 006565 596 YTKFTVQKLKQELTKHNFGAELLQLRNPNKKEILALYEKC 635 (640)
Q Consensus 596 y~k~t~~kl~~el~~~~~g~~l~~l~~~~k~~i~aly~~~ 635 (640)
|.+|||..||++|.++|.- .+-+|.++++-...|
T Consensus 1 l~~l~v~eLk~~l~~~gL~------~~G~K~~Li~Rl~~~ 34 (35)
T PF02037_consen 1 LSKLTVAELKEELKERGLS------TSGKKAELIERLKEH 34 (35)
T ss_dssp TTTSHHHHHHHHHHHTTS-------STSSHHHHHHHHHHH
T ss_pred CCcCcHHHHHHHHHHCCCC------CCCCHHHHHHHHHHh
Confidence 6789999999999999853 267788888876654
No 246
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=78.90 E-value=77 Score=32.00 Aligned_cols=92 Identities=21% Similarity=0.317 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 335 RIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAA-RKGKSEFENLAMERMAVIERVQRQIES 413 (640)
Q Consensus 335 ~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~areead~a-q~E~~elQr~~~qrlaeIerl~~qIE~ 413 (640)
..|.+-|..+...+.....-+..+......++..+..+...+.....-+..| ...-..+-+ ..+..+..++.++..
T Consensus 26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr---~al~~k~~~e~~~~~ 102 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAR---EALQRKADLEEQAER 102 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH---HHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444444444444444444333 222222222 222333344444455
Q ss_pred HHHHHHHhHHHHhhhc
Q 006565 414 LERQKTDLTNEVNRIR 429 (640)
Q Consensus 414 lEre~e~Le~E~~~l~ 429 (640)
++..+..+...+..++
T Consensus 103 l~~~~~~~~~~~~~l~ 118 (221)
T PF04012_consen 103 LEQQLDQAEAQVEKLK 118 (221)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555444444444444
No 247
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=78.46 E-value=57 Score=30.24 Aligned_cols=65 Identities=14% Similarity=0.179 Sum_probs=30.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 304 VEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKE 368 (640)
Q Consensus 304 ~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee 368 (640)
+..+.+..++..|+..++..+.-...+..+-..|..-...|...-.+..++..+++..+.++-..
T Consensus 9 as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~ 73 (107)
T PF09304_consen 9 ASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRN 73 (107)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555555555555555555555554444444444444444433
No 248
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.39 E-value=1.4e+02 Score=34.90 Aligned_cols=220 Identities=19% Similarity=0.243 Sum_probs=105.7
Q ss_pred HhHHhhhhhhHHHHHHHHHHHhHhhHhhHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 155 KTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAA 234 (640)
Q Consensus 155 k~le~~~~e~~ew~~kYe~~~~~~k~~~~~~AAGIsklK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkA 234 (640)
.+++..+.+..-.-+.|+++-.++-. -+-.|+.-+. .|..+..+|.......+.++.++.-.+.-+...-.+.++.
T Consensus 8 q~ve~lr~eierLT~el~q~t~e~~q---aAeyGL~lLe-eK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~ 83 (772)
T KOG0999|consen 8 QEVEKLRQEIERLTEELEQTTEEKIQ---AAEYGLELLE-EKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKV 83 (772)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555556666666677776654332 1235776553 4566777777777777777766654444444444444332
Q ss_pred HHHHHHHHHhhhHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHh
Q 006565 235 LEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELK--------------AAESKMR 300 (640)
Q Consensus 235 eek~a~L~er~~~~~q~r~~a~ree~~s~le~kE~kie~~k~ei~~aEq~la~~q~eL~--------------e~e~kIk 300 (640)
+..-..+++++..+..+--+..=-+|=++.+++++.++.++..+.+.. ..+..-.
T Consensus 84 -----------~~~g~e~EesLLqESaakE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~ 152 (772)
T KOG0999|consen 84 -----------ARDGEEREESLLQESAAKEEYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRR 152 (772)
T ss_pred -----------hccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHH
Confidence 222333444444443333222222444444555555555555544432 2222223
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 301 SYEVEISSQKLETKELSEKLEAVNAKAQSFEREA----------RIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAK 370 (640)
Q Consensus 301 ~~e~ei~~le~el~~L~ekle~~~~eies~e~el----------~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~k 370 (640)
.+-.+++..+-+-..|-+.|-.++.+-=++.+.. ..|+.+|.+|++..+-.....++...=-+.+++...
T Consensus 153 rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln~q~ee~~~Lk~IAekQlE 232 (772)
T KOG0999|consen 153 RLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQLEEAIRLKEIAEKQLE 232 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444433333333 345556666655555555554444433344555555
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 006565 371 KATELADRERAEAAAARKG 389 (640)
Q Consensus 371 ea~e~~~~areead~aq~E 389 (640)
+|.+-++.-|+.--+.++|
T Consensus 233 EALeTlq~EReqk~alkkE 251 (772)
T KOG0999|consen 233 EALETLQQEREQKNALKKE 251 (772)
T ss_pred HHHHHHHhHHHHHHHHHHH
Confidence 5555444444333333333
No 249
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=78.16 E-value=1.1e+02 Score=33.31 Aligned_cols=13 Identities=8% Similarity=0.066 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 006565 274 KATKIEHAEQCLT 286 (640)
Q Consensus 274 ~k~ei~~aEq~la 286 (640)
++..|......+.
T Consensus 75 L~~~I~egr~~~~ 87 (312)
T smart00787 75 LKKYISEGRDLFK 87 (312)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 250
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=77.63 E-value=48 Score=29.13 Aligned_cols=71 Identities=17% Similarity=0.214 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Q 006565 439 VALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQEL 510 (640)
Q Consensus 439 v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~l~e~nrrleal~~e~~~lqs~id~Leg~~ 510 (640)
+..||.+|...-..|.-| +.++++++++=..+..+....+.......+....++.+...-+..|..|=|-+
T Consensus 6 leqLE~KIqqAvdtI~LL-qmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm 76 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLL-QMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRM 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 667788888888888744 88888888888888888888777777777888888888888888887775544
No 251
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.50 E-value=39 Score=29.10 Aligned_cols=62 Identities=19% Similarity=0.327 Sum_probs=27.2
Q ss_pred HHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 294 AAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQS-------FEREARIMEQDKVYLEQKYKSEFERF 355 (640)
Q Consensus 294 e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies-------~e~el~~L~~ei~~L~ekl~se~er~ 355 (640)
.++.+|.....-|-.+.-++.+|.++..++..+..+ ++.+...|+++-....+.+.+..++|
T Consensus 8 kLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLGkm 76 (79)
T COG3074 8 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLGKM 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344444444444444444554444444444444333 33333333444344444444444444
No 252
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=77.14 E-value=1.5e+02 Score=34.43 Aligned_cols=129 Identities=20% Similarity=0.177 Sum_probs=82.1
Q ss_pred HHHHHHHhcCCCCcchhhH-------HHHHHHHHHhhhhcccCCchHH--HHHHHHHHhhhchHHHHHHHHHhHHHhHHH
Q 006565 14 MERKLRAACHSSDASIDNV-------VKVLDGLISEYETSCHGPGKWQ--KLATFLQQSSEGPILDLVKRLIDQIGSERS 84 (640)
Q Consensus 14 me~~l~~ac~~~~a~~~~~-------~~~l~~~l~~y~~s~~G~g~~~--k~~~~L~~~l~~~~~d~~~~~~~~i~~~~~ 84 (640)
+|..=-+||++-.-+.|.- +-=+.+=++....-+.=-+--+ |+-.|||++|- +++++.|-. +.+
T Consensus 143 ee~~re~a~~aL~k~qe~~~~k~d~E~arm~aqi~~l~eEmS~r~l~reakl~~~lqk~f~-alEk~mka~------e~~ 215 (531)
T PF15450_consen 143 EEQGREDACSALQKSQEEDSQKVDNEVARMQAQITKLGEEMSLRFLKREAKLCSFLQKSFL-ALEKRMKAQ------ESS 215 (531)
T ss_pred HHHhHHHHHHHHHhcchhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH------HHH
Confidence 3444446999876655543 3334444444444444444455 89999999987 777766543 222
Q ss_pred HHHhhhcCchhHHHHHHHHH-HhhHHhHHHHHHHhhHHhHHHHHhhH----HHHHHHHhHHhhhcchHHhHHhhHHhHHh
Q 006565 85 SLMLKYRSIEDNMKLLKKQL-EDSERYKSEYLKRYDDAINDKKKLAD----DYTSRINNLQGENISLREKSSSLSKTVDS 159 (640)
Q Consensus 85 ~l~~~c~s~~~k~~~~~k~l-e~~~k~~~~~~k~~e~~i~d~kk~~~----~~~~~~~~l~~k~~s~ee~~~~l~k~le~ 159 (640)
+|+. -+.| +-+++.-.-++..|++-+..++...+ .+..+.+.+.-.|+.+++-+.-|.+.+..
T Consensus 216 rl~~------------E~~lreElE~rW~~lq~l~Ee~l~al~gq~ev~~~~~~~E~~~l~eq~~~ld~AV~~Ltk~v~~ 283 (531)
T PF15450_consen 216 RLRT------------ERSLREELESRWQKLQELTEERLRALQGQQEVGLGGIQSEESKLLEQCRKLDEAVAQLTKFVQQ 283 (531)
T ss_pred HHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 2322 1223 55667777788899999999855444 55667777888888888887777777665
Q ss_pred hh
Q 006565 160 LK 161 (640)
Q Consensus 160 ~~ 161 (640)
..
T Consensus 284 ~q 285 (531)
T PF15450_consen 284 NQ 285 (531)
T ss_pred HH
Confidence 43
No 253
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=77.05 E-value=62 Score=29.98 Aligned_cols=60 Identities=20% Similarity=0.338 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 006565 394 ENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSK-VALLEARVEEREKEIE 454 (640)
Q Consensus 394 Qr~~~qrlaeIerl~~qIE~lEre~e~Le~E~~~l~~sEl~al~k-v~~lE~~vee~e~eiE 454 (640)
+.....+...|+.....++.+..+.+.|..-...|. .+...+.. +.+|.+.|.+....++
T Consensus 15 ~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~-~q~~s~~qr~~eLqaki~ea~~~le 75 (107)
T PF09304_consen 15 QNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQ-AQNASRNQRIAELQAKIDEARRNLE 75 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444 33333333 4444444444444443
No 254
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=76.99 E-value=89 Score=33.39 Aligned_cols=67 Identities=19% Similarity=0.365 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 006565 442 LEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQE 509 (640)
Q Consensus 442 lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~l~e~nrrleal~~e~~~lqs~id~Leg~ 509 (640)
....+...+.+++.+ ..+..+....+..+...+...+.++.++..+-..++-.+..++++++..+|-
T Consensus 198 ~~r~l~~~~~ELe~~-~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf~~~ 264 (269)
T PF05278_consen 198 KDRKLELKKEELEEL-EEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKFHGK 264 (269)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 334444444455544 4445555556666666666666666666666666666677777887777664
No 255
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=76.98 E-value=88 Score=33.44 Aligned_cols=11 Identities=9% Similarity=0.075 Sum_probs=6.9
Q ss_pred HHHHHHHHHHH
Q 006565 264 LAEKEEEMKEK 274 (640)
Q Consensus 264 le~kE~kie~~ 274 (640)
+.|++..+.++
T Consensus 168 V~WLR~~L~Ei 178 (269)
T PF05278_consen 168 VDWLRSKLEEI 178 (269)
T ss_pred hHHHHHHHHHH
Confidence 67777665553
No 256
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.45 E-value=1.3e+02 Score=34.71 Aligned_cols=68 Identities=12% Similarity=0.108 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhh
Q 006565 361 RCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRI 428 (640)
Q Consensus 361 rleeaEee~kea~e~~~~areead~aq~E~~elQr~~~qrlaeIerl~~qIE~lEre~e~Le~E~~~l 428 (640)
-|+.+..+++...+..+..+.-+.....++.++|..-...-+.|+++++..-+|.+|+-++-.-+.-+
T Consensus 335 GF~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikqeil 402 (508)
T KOG3091|consen 335 GFEDLRQRLKVQDQEVKQHRIRINAIGERVTELQKHHADAVAKIEEAKNRHVELSHRILRVMIKQEIL 402 (508)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777788888888888888888888999999997778888889999888888888887775544433
No 257
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.67 E-value=1.7e+02 Score=34.28 Aligned_cols=33 Identities=21% Similarity=0.231 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 006565 463 QRASTVKKLEDLLESERRSRAAANAMAERLSLE 495 (640)
Q Consensus 463 q~~~~l~~le~~le~~re~l~e~nrrleal~~e 495 (640)
..++.+......+.+.++-+++...-+..++.+
T Consensus 525 ktkQel~~tkarl~stqqslaEke~HL~nLr~e 557 (654)
T KOG4809|consen 525 KTKQELDATKARLASTQQSLAEKEAHLANLRIE 557 (654)
T ss_pred HHhhChhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444445555555554444444443
No 258
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=75.04 E-value=1.7e+02 Score=34.03 Aligned_cols=22 Identities=14% Similarity=0.430 Sum_probs=13.7
Q ss_pred hhhhhhHHHHHH----------HHHHHhHhhH
Q 006565 159 SLKNEISDWKRK----------YDQVLTKQKA 180 (640)
Q Consensus 159 ~~~~e~~ew~~k----------Ye~~~~~~k~ 180 (640)
..++-+..|... |+.+|.-++-
T Consensus 265 ~~~~~a~~~~~~~~~p~~~svpy~~a~~n~ri 296 (518)
T PF10212_consen 265 QYKKRAAAYMSSLKKPCPESVPYEEALANRRI 296 (518)
T ss_pred HHHHHHHHHHHHhcCCCCccCChHHHHhhhHH
Confidence 456666677654 7777774443
No 259
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=74.93 E-value=1e+02 Score=31.29 Aligned_cols=100 Identities=14% Similarity=0.107 Sum_probs=46.6
Q ss_pred hhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 300 RSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRE 379 (640)
Q Consensus 300 k~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~a 379 (640)
.+...-+..|+.++.+.+.-.......+.+-+.-+.....-.......+..+..-+......+..++.-...+.-++...
T Consensus 63 ~GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK 142 (188)
T PF05335_consen 63 AGKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQELAEK 142 (188)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444455555555544444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHhhHHHHHHHHHH
Q 006565 380 RAEAAAARKGKSEFENLAME 399 (640)
Q Consensus 380 reead~aq~E~~elQr~~~q 399 (640)
+..++.++..+..+.+.+..
T Consensus 143 ~qLLeaAk~Rve~L~~QL~~ 162 (188)
T PF05335_consen 143 TQLLEAAKRRVEELQRQLQA 162 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444433
No 260
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=74.92 E-value=1.9e+02 Score=34.62 Aligned_cols=218 Identities=12% Similarity=0.110 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 253 EDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFER 332 (640)
Q Consensus 253 ~~a~ree~~s~le~kE~kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~ 332 (640)
+.+++.++--..++.+..+.++..++...-. .-+.++......+..+|...+.++..|-..+-..........+
T Consensus 23 L~~IW~~igE~~~e~d~~l~~le~e~~~~y~------~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k 96 (660)
T KOG4302|consen 23 LQKIWDEIGESETERDKKLLRLEQECLEIYK------RKVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGEISDK 96 (660)
T ss_pred HHHHHHHhCccHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccc
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHhhHHHHHHHH
Q 006565 333 EARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRE---------------RAEAAAARKGKSEFENLA 397 (640)
Q Consensus 333 el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~a---------------reead~aq~E~~elQr~~ 397 (640)
.-..|++.+..+...++.....+++-...|.+.......+-.+..-. -..++..|....++|+++
T Consensus 97 ~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek 176 (660)
T KOG4302|consen 97 IEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKEK 176 (660)
T ss_pred cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHh-hhcHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 006565 398 MERMAVIERVQRQIESLERQKTDLTNEVN-RIRESELEALSK---VALLEARVEEREKEIESLLESNNEQRASTVKKLED 473 (640)
Q Consensus 398 ~qrlaeIerl~~qIE~lEre~e~Le~E~~-~l~~sEl~al~k---v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~ 473 (640)
..|+.+|..+...|-.+-..+.---.... ... .-+..... .......++.+..-+..| .....++...++.+..
T Consensus 177 ~~Rlekv~~~~~~I~~l~~~Lg~~~~~~vt~~~-~sL~~~~~~~~~~is~etl~~L~~~v~~l-~~~k~qr~~kl~~l~~ 254 (660)
T KOG4302|consen 177 SDRLEKVLELKEEIKSLCSVLGLDFSMTVTDVE-PSLVDHDGEQSRSISDETLDRLDKMVKKL-KEEKKQRLQKLQDLRT 254 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcccchhhhh-hhhhhccCcccccCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q ss_pred HHHHH
Q 006565 474 LLESE 478 (640)
Q Consensus 474 ~le~~ 478 (640)
.+-.+
T Consensus 255 ~~~~L 259 (660)
T KOG4302|consen 255 KLLEL 259 (660)
T ss_pred HHHHH
No 261
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=74.89 E-value=1.2e+02 Score=32.27 Aligned_cols=79 Identities=9% Similarity=0.082 Sum_probs=39.4
Q ss_pred HHhHHhhhhhhHHH--HHHHHHHHhHhhHhhHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 154 SKTVDSLKNEISDW--KRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREA 231 (640)
Q Consensus 154 ~k~le~~~~e~~ew--~~kYe~~~~~~k~~~~~~AAGIsklK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~QA 231 (640)
.-.+..++.|..-| ..-|+..+---+. .|--=.+.+=..-++.+.+|. .-+.+-.|+-.++..+-
T Consensus 72 q~~~~~a~~elq~~ks~~Q~e~~v~a~e~---~~~rll~d~i~nLk~se~~lk----------qQ~~~a~RrE~ilv~rl 138 (330)
T KOG2991|consen 72 QDFKVMARDELQLRKSWKQYEAYVQALEG---KYTRLLSDDITNLKESEEKLK----------QQQQEAARRENILVMRL 138 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC---cccchhHHHHHhhHHHHHHHH----------HHHHHHHHHHHHHHHHH
Confidence 45678888899889 5677777653222 111112222233344455554 33334444444555554
Q ss_pred HHHHHHHHHHHHhh
Q 006565 232 KAALEKAAIVQERT 245 (640)
Q Consensus 232 KkAeek~a~L~er~ 245 (640)
-.-+.....+.+++
T Consensus 139 A~kEQEmqe~~sqi 152 (330)
T KOG2991|consen 139 ATKEQEMQECTSQI 152 (330)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444444
No 262
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=74.45 E-value=55 Score=28.11 Aligned_cols=51 Identities=16% Similarity=0.134 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 439 VALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAE 490 (640)
Q Consensus 439 v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~l~e~nrrle 490 (640)
|..+-..|..++.+++.| +..+..+.+....|..+...+++.......|++
T Consensus 13 i~~aveti~~Lq~e~eeL-ke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~ 63 (72)
T PF06005_consen 13 IQQAVETIALLQMENEEL-KEKNNELKEENEELKEENEQLKQERNAWQERLR 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333 333333333344444433333333333333333
No 263
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=74.42 E-value=2e+02 Score=34.57 Aligned_cols=34 Identities=12% Similarity=0.089 Sum_probs=14.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 194 SRSTAAEARLAAAREQALSAQEEVEEWKRKYGVA 227 (640)
Q Consensus 194 ~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L 227 (640)
.-......++......+.-....+..|+..+...
T Consensus 107 ~~~~~~q~~~~~~~~~l~~~~~~~~~~~~~~~s~ 140 (670)
T KOG0239|consen 107 DLLSELQSNLSELNMALLESVEELSQAEEDNPSI 140 (670)
T ss_pred hhccccccchhhhhhhhhhhhHhhhhhhcccccH
Confidence 3333344444444444444444444444444333
No 264
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=74.12 E-value=1e+02 Score=31.04 Aligned_cols=54 Identities=24% Similarity=0.302 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 006565 440 ALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSL 494 (640)
Q Consensus 440 ~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~l~e~nrrleal~~ 494 (640)
..-...++-++.++-.| .....--...|..|+..|-.+..+.--...++..++-
T Consensus 116 ~~klekLe~LE~E~~rL-t~~Q~~ae~Ki~~LE~KL~eEehqRKlvQdkAaqLQt 169 (178)
T PF14073_consen 116 QAKLEKLEKLEKEYLRL-TATQSLAETKIKELEEKLQEEEHQRKLVQDKAAQLQT 169 (178)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334556666666666 6666666778888888888777776666666655444
No 265
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=73.80 E-value=97 Score=30.60 Aligned_cols=57 Identities=14% Similarity=0.193 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 006565 335 RIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKS 391 (640)
Q Consensus 335 ~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~areead~aq~E~~ 391 (640)
.++...+..+-...++....++.+...+.++..++...-.++|.....--.+|....
T Consensus 9 ~~ie~sK~qIf~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~ 65 (159)
T PF05384_consen 9 DTIESSKEQIFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLA 65 (159)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444444434443333
No 266
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=73.73 E-value=60 Score=31.60 Aligned_cols=60 Identities=32% Similarity=0.467 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 006565 404 IERVQRQIESLERQKTDLTNEVNRIRESELEALSK---VALLEARVEEREKEIESLLESNNEQRA 465 (640)
Q Consensus 404 Ierl~~qIE~lEre~e~Le~E~~~l~~sEl~al~k---v~~lE~~vee~e~eiE~L~~~~~eq~~ 465 (640)
+..++..|..+..++..+..+...++ +|+..+.. ..++...|.++..++..+ ...+..+.
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~-~eL~~L~~~~t~~el~~~i~~l~~e~~~l-~~kL~~l~ 136 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLE-AELASLSSEPTNEELREEIEELEEEIEEL-EEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 55555666666666777777777777 77777766 566666666666666666 44444433
No 267
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=73.68 E-value=1.3e+02 Score=32.21 Aligned_cols=50 Identities=20% Similarity=0.284 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 287 TLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARI 336 (640)
Q Consensus 287 ~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~ 336 (640)
.+..+|..++..+.-++..+...+.+|..|+..+...+.+++........
T Consensus 85 Klshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~ 134 (307)
T PF10481_consen 85 KLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASS 134 (307)
T ss_pred HhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33445666666666666777777777777777777777776666555543
No 268
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=73.35 E-value=37 Score=28.90 Aligned_cols=56 Identities=21% Similarity=0.258 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 006565 400 RMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSK-VALLEARVEEREKEIESL 456 (640)
Q Consensus 400 rlaeIerl~~qIE~lEre~e~Le~E~~~l~~sEl~al~k-v~~lE~~vee~e~eiE~L 456 (640)
+.+.|..|+.+++++.+.+...+.+...|+ .|=+.+.. +...-..+..+..+++.|
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~-~ERd~~~~~l~~a~~e~~~Lk~E~e~L 59 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLR-RERDSAERQLGDAYEENNKLKEENEAL 59 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777777777777777777777777 66555554 555544555555555544
No 269
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=73.13 E-value=50 Score=28.14 Aligned_cols=57 Identities=16% Similarity=0.285 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 309 QKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVA 365 (640)
Q Consensus 309 le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleea 365 (640)
++..+..|..++..+..++..++.....|..+.+....++...+.....+..+.+..
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L 59 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEAL 59 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555555555444444444433333333333
No 270
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=73.09 E-value=1.2e+02 Score=31.45 Aligned_cols=112 Identities=21% Similarity=0.329 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 335 RIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAA-RKGKSEFENLAMERMAVIERVQRQIES 413 (640)
Q Consensus 335 ~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~areead~a-q~E~~elQr~~~qrlaeIerl~~qIE~ 413 (640)
..|.+-|..+...+..+.+-...+..+-.-++.++..+.......+.-+..| +... ...+-+.+..+..++.++..
T Consensus 27 ~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~---E~LAr~al~~~~~le~~~~~ 103 (225)
T COG1842 27 KMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGN---EDLAREALEEKQSLEDLAKA 103 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555555555555555555544444333 2222 22334444445555555555
Q ss_pred HHHHHHHhHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 414 LERQKTDLTNEVNRIRESELEALSKVALLEARVEEREKEIESL 456 (640)
Q Consensus 414 lEre~e~Le~E~~~l~~sEl~al~kv~~lE~~vee~e~eiE~L 456 (640)
++..+.....-+.+++ .. +..++.+|.+++..++.+
T Consensus 104 ~~~~~~~~~~~~~~l~-~~------~~~Le~Ki~e~~~~~~~l 139 (225)
T COG1842 104 LEAELQQAEEQVEKLK-KQ------LAALEQKIAELRAKKEAL 139 (225)
T ss_pred HHHHHHHHHHHHHHHH-HH------HHHHHHHHHHHHHHHHHH
Confidence 5555555544444444 22 555555555555555555
No 271
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=72.08 E-value=44 Score=28.33 Aligned_cols=57 Identities=19% Similarity=0.150 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 006565 439 VALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEV 496 (640)
Q Consensus 439 v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~l~e~nrrleal~~e~ 496 (640)
+..|+.+|+.+-..++.| ...|..+..++..+..+-..+.+....+..|+++.=..+
T Consensus 2 L~~Le~kle~Li~~~~~L-~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RL 58 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERL-KSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRL 58 (65)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 356788888888888888 888888888888888888888888888888887655433
No 272
>PRK11519 tyrosine kinase; Provisional
Probab=71.90 E-value=83 Score=37.74 Aligned_cols=30 Identities=17% Similarity=0.185 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 330 FEREARIMEQDKVYLEQKYKSEFERFEEVQ 359 (640)
Q Consensus 330 ~e~el~~L~~ei~~L~ekl~se~er~ee~~ 359 (640)
.+.++..|+.+.+-.+..|....+++++..
T Consensus 368 ~e~~~~~L~Re~~~~~~lY~~lL~r~~e~~ 397 (719)
T PRK11519 368 TQQEIVRLTRDVESGQQVYMQLLNKQQELK 397 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666777777777778888888887764
No 273
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=71.79 E-value=1.9e+02 Score=33.20 Aligned_cols=42 Identities=17% Similarity=0.380 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 328 QSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEA 369 (640)
Q Consensus 328 es~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~ 369 (640)
+.+.-++..++-...+|+++|..+.+.-......|-+..+.+
T Consensus 414 etLqlelkK~k~nyv~LQEry~~eiQqKnksvsqclEmdk~L 455 (527)
T PF15066_consen 414 ETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQCLEMDKTL 455 (527)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 333444444444445555555544443333333444433333
No 274
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=71.56 E-value=53 Score=32.99 Aligned_cols=117 Identities=18% Similarity=0.269 Sum_probs=63.2
Q ss_pred cchhhHHHH---HHHHHHhhhhcccCCchHHHHHHHHHHhhhchHHHHHHHHHhHHHhHHHHHHhhhcCchhHHHHHHHH
Q 006565 27 ASIDNVVKV---LDGLISEYETSCHGPGKWQKLATFLQQSSEGPILDLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQ 103 (640)
Q Consensus 27 a~~~~~~~~---l~~~l~~y~~s~~G~g~~~k~~~~L~~~l~~~~~d~~~~~~~~i~~~~~~l~~~c~s~~~k~~~~~k~ 103 (640)
++=.+|+.+ ||..|..-.+--.|.-.-| +.-|..++.-+|..|. ..|-- .=-+|.++
T Consensus 30 ~tR~dVi~L~e~Ld~~L~~~~ar~~gIcpvr----------~~ly~~~F~ELIRQVT-------i~C~E---RGlLL~rv 89 (189)
T PF10211_consen 30 ATRQDVIQLQEWLDKMLQQRQARETGICPVR----------EELYSQCFDELIRQVT-------IDCPE---RGLLLLRV 89 (189)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCcccccHHH----------HHHHHHHHHHHHHHHH-------hCcHH---HhHHHHHH
Confidence 566677776 9999988766655532222 1112222333333332 22322 22355566
Q ss_pred HHhhHHhHHHHHHHhhHHhHHH-HHh------hHHHHHHHHhHHhhhcchHHhHHhhHHhHHhhhhh
Q 006565 104 LEDSERYKSEYLKRYDDAINDK-KKL------ADDYTSRINNLQGENISLREKSSSLSKTVDSLKNE 163 (640)
Q Consensus 104 le~~~k~~~~~~k~~e~~i~d~-kk~------~~~~~~~~~~l~~k~~s~ee~~~~l~k~le~~~~e 163 (640)
-+.....-.-|+..|+++|.-- ++. ...+..++..|...+..|+.+...+....+..++.
T Consensus 90 rde~~~~l~~y~~l~~s~~~f~~rk~l~~e~~~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~ 156 (189)
T PF10211_consen 90 RDEYRMTLDAYQTLYESSIAFGMRKALQAEQGKQELEEEIEELEEEKEELEKQVQELKNKCEQLEKR 156 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666667888888888754 333 23445555555555555555555555555555443
No 275
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=70.57 E-value=2.5e+02 Score=33.89 Aligned_cols=20 Identities=5% Similarity=-0.001 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 006565 207 REQALSAQEEVEEWKRKYGV 226 (640)
Q Consensus 207 ~enL~RVkDel~Ewkrky~~ 226 (640)
..+-+++.+++..+=.-|-.
T Consensus 236 ~~dP~~Aa~ilN~la~~Yi~ 255 (726)
T PRK09841 236 GDDPQLITRILNSIANNYLQ 255 (726)
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 34455556666665555543
No 276
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=70.35 E-value=1e+02 Score=35.14 Aligned_cols=62 Identities=13% Similarity=0.144 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhc
Q 006565 368 EAKKATELADRERAEAAAARKGKSEFENLA--MERMAVIERVQRQIESLERQKTDLTNEVNRIR 429 (640)
Q Consensus 368 e~kea~e~~~~areead~aq~E~~elQr~~--~qrlaeIerl~~qIE~lEre~e~Le~E~~~l~ 429 (640)
.+..|+++++.+...+..++......|+.. +.=.++.+-.-..|..|+.++-.+..++..+.
T Consensus 243 ~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le~qLa~~~aeL~~L~ 306 (434)
T PRK15178 243 RILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQLAEAKAEYAQLM 306 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444433 33333333333444455555444444444443
No 277
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=70.31 E-value=1e+02 Score=29.51 Aligned_cols=75 Identities=24% Similarity=0.320 Sum_probs=51.1
Q ss_pred HHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 298 KMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKA 372 (640)
Q Consensus 298 kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~kea 372 (640)
.|..+.+.|+.+++=-+-..+.+-.+..-.+.+.+++..|.-+..||++-+..-.+-+..+.-.|.+-+.+..+.
T Consensus 7 ~iE~LInrInelQQaKKk~~EELgEa~~l~eaL~~ELDsL~~EkvhLeeilnkKqe~l~iLqlhcqeke~eaqrq 81 (134)
T PF15233_consen 7 QIEDLINRINELQQAKKKSSEELGEAQALWEALQRELDSLNGEKVHLEEILNKKQETLRILQLHCQEKESEAQRQ 81 (134)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 455555666666665566666777777777888888888888888887777766666666666666655554433
No 278
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=69.82 E-value=1.7e+02 Score=31.63 Aligned_cols=41 Identities=12% Similarity=0.216 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 307 SSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQK 347 (640)
Q Consensus 307 ~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ek 347 (640)
...+-.|++|..+++.-..+++.-+.+|..|+-.+-++++-
T Consensus 64 QQKEV~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrED 104 (305)
T PF15290_consen 64 QQKEVCIRHLKAKLKESENRLHDRETEIDELKSQLARMRED 104 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 33445566666666666666666666666666666666443
No 279
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=69.38 E-value=77 Score=27.64 Aligned_cols=49 Identities=24% Similarity=0.281 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 331 EREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRE 379 (640)
Q Consensus 331 e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~a 379 (640)
..-+..|...|..+...+......++.....|..+..+.+......+..
T Consensus 51 ~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k~~e~L~e~~ 99 (123)
T PF02050_consen 51 QRYISALEQAIQQQQQELERLEQEVEQAREELQEARRERKKLEKLKERR 99 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333334444444444444444444444333333
No 280
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=69.36 E-value=2.3e+02 Score=33.05 Aligned_cols=38 Identities=18% Similarity=0.195 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 006565 463 QRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQ 500 (640)
Q Consensus 463 q~~~~l~~le~~le~~re~l~e~nrrleal~~e~~~lq 500 (640)
++..+-.+++.+|....++++..|.++..-.-+++.++
T Consensus 477 EL~TTr~NYE~QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 477 ELETTRRNYEEQLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445556788888888888888888887777666665
No 281
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=69.13 E-value=1.2e+02 Score=32.94 Aligned_cols=90 Identities=16% Similarity=0.212 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 006565 312 ETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKS 391 (640)
Q Consensus 312 el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~areead~aq~E~~ 391 (640)
.++.|...+..++.+-...=--...|..++..|..++..+..++++..+.+..+.+++.+....+...+...+..+.+..
T Consensus 78 s~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~ 157 (302)
T PF09738_consen 78 SLRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELD 157 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555544444444555555666655555555555555555555555555444444444444444444444
Q ss_pred HHHHHHHHHH
Q 006565 392 EFENLAMERM 401 (640)
Q Consensus 392 elQr~~~qrl 401 (640)
.++..+.++.
T Consensus 158 ~Lre~L~~rd 167 (302)
T PF09738_consen 158 ELREQLKQRD 167 (302)
T ss_pred HHHHHHHHHH
Confidence 4444443333
No 282
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=68.41 E-value=60 Score=33.83 Aligned_cols=68 Identities=22% Similarity=0.288 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 006565 439 VALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQ 507 (640)
Q Consensus 439 v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~l~e~nrrleal~~e~~~lqs~id~Le 507 (640)
+.++...+++..++.+.| ...++.++..++.++..|..++...+..+.++.-+--++.-++...+.|+
T Consensus 137 ~ee~kekl~E~~~EkeeL-~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe 204 (290)
T COG4026 137 YEELKEKLEELQKEKEEL-LKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELE 204 (290)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhc
Confidence 444444555555555555 55555555566666666666665556666555555555555565555553
No 283
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=67.39 E-value=1.5e+02 Score=30.28 Aligned_cols=39 Identities=15% Similarity=0.344 Sum_probs=22.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 006565 386 ARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNE 424 (640)
Q Consensus 386 aq~E~~elQr~~~qrlaeIerl~~qIE~lEre~e~Le~E 424 (640)
...|...+++.+..+..+...++.....|+.+...|..+
T Consensus 161 i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~~e 199 (206)
T PF14988_consen 161 IKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQQLQQE 199 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555566666666555555555555555555555443
No 284
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=67.14 E-value=45 Score=27.48 Aligned_cols=47 Identities=19% Similarity=0.366 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006565 445 RVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERL 492 (640)
Q Consensus 445 ~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~l~e~nrrleal 492 (640)
.|+.+..++..| ...+.++.+.|..+...+..-.++-+++|.|++..
T Consensus 4 kid~Ls~dVq~L-~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~ 50 (56)
T PF04728_consen 4 KIDQLSSDVQTL-NSKVDQLSSDVNALRADVQAAKEEAARANQRLDNI 50 (56)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444444444 44444446666666666666666777788887754
No 285
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=67.12 E-value=2.6e+02 Score=32.79 Aligned_cols=81 Identities=15% Similarity=0.206 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 267 KEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLET-------KELSEKLEAVNAKAQSFEREARIMEQ 339 (640)
Q Consensus 267 kE~kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el-------~~L~ekle~~~~eies~e~el~~L~~ 339 (640)
++..++.++.++......+.. .+|.+++.++...+.+|..+=.-+ ++....+.-+..-+.........|+.
T Consensus 253 id~~~~~L~~~l~~~~~~l~~--Leld~aeeel~~I~e~ie~lYd~lE~EveA~~~V~~~~~~l~~~l~k~ke~n~~L~~ 330 (570)
T COG4477 253 IDSRLERLKEQLVENSELLTQ--LELDEAEEELGLIQEKIESLYDLLEREVEAKNVVEENLPILPDYLEKAKENNEHLKE 330 (570)
T ss_pred HHHHHHHHHHHHHHHHhHHHH--hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH
Confidence 334444555555444333332 234444444444444443322211 11222333333444444444555555
Q ss_pred HHHHHHHHHH
Q 006565 340 DKVYLEQKYK 349 (640)
Q Consensus 340 ei~~L~ekl~ 349 (640)
+|.++++.|-
T Consensus 331 Eie~V~~sY~ 340 (570)
T COG4477 331 EIERVKESYR 340 (570)
T ss_pred HHHHHHHHhc
Confidence 5555555553
No 286
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=65.74 E-value=3.1e+02 Score=33.18 Aligned_cols=384 Identities=13% Similarity=0.168 Sum_probs=0.0
Q ss_pred HhhHHhHHHHHHHhhHHhHHH----HHhhHHHHHHHHhHHhhhcchHHhHHhhHHhHHhhhhhhHHHHHHHHHHHhHhhH
Q 006565 105 EDSERYKSEYLKRYDDAINDK----KKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKA 180 (640)
Q Consensus 105 e~~~k~~~~~~k~~e~~i~d~----kk~~~~~~~~~~~l~~k~~s~ee~~~~l~k~le~~~~e~~ew~~kYe~~~~~~k~ 180 (640)
||+...-.+.++.-..-++.+ +.....+.+....|+....+||-+.....+.|-.+.+++ |..=++..+
T Consensus 136 E~~q~ELee~q~~Hqeql~~Lt~aHq~~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~-------d~L~~qLsk 208 (739)
T PF07111_consen 136 EGSQRELEEAQRLHQEQLSSLTQAHQEALASLTSKAEELEKSLESLETRRAGEAKELAEAQREA-------DLLREQLSK 208 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
Q ss_pred hhHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------
Q 006565 181 MEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAAL------------------------- 235 (640)
Q Consensus 181 ~~~~~AAGIsklK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAe------------------------- 235 (640)
-.+.+.+.++ +-.+|-.--.++..-.--...|+.--..|..-.+.-+
T Consensus 209 ~~~~le~q~t--------lv~~LR~YvGeq~p~~~~~~~we~Er~~L~~tVq~L~edR~~L~~T~ELLqVRvqSLt~IL~ 280 (739)
T PF07111_consen 209 TQEELEAQVT--------LVEQLRKYVGEQVPPEVHSQAWEPEREELLETVQHLQEDRDALQATAELLQVRVQSLTDILT 280 (739)
T ss_pred hHHHHHHHHH--------HHHHHHHHHhhhCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ------------------HHHHHHHHhhhHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 236 ------------------EKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAES 297 (640)
Q Consensus 236 ------------------ek~a~L~er~~~~~q~r~~a~ree~~s~le~kE~kie~~k~ei~~aEq~la~~q~eL~e~e~ 297 (640)
+-....+.-.. --..+.=+|--++.++--..+..+..++..+...++.+.....+-.-+..
T Consensus 281 LQEeEL~~Kvqp~d~Le~e~~~K~q~LL~-~WREKVFaLmVQLkaQeleh~~~~~qL~~qVAsLQeev~sq~qEqaiLq~ 359 (739)
T PF07111_consen 281 LQEEELCRKVQPSDPLEPEFSRKCQQLLS-RWREKVFALMVQLKAQELEHRDSVKQLRGQVASLQEEVASQQQEQAILQH 359 (739)
T ss_pred HHHHHHhccCCCCCCCCchhHHHHHHHHH-HHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 298 KMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELAD 377 (640)
Q Consensus 298 kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~kea~e~~~ 377 (640)
.+.+..+++..-.-..+.|...+..+.........+.......+..+..-+.+...-+......++.+-.++.....++.
T Consensus 360 SLqDK~AElevERv~sktLQ~ELsrAqea~~~lqqq~~~aee~Lk~v~eav~S~q~~L~s~ma~ve~a~aRL~sL~~RlS 439 (739)
T PF07111_consen 360 SLQDKAAELEVERVGSKTLQAELSRAQEARRRLQQQTASAEEQLKLVSEAVSSSQQWLESQMAKVEQALARLPSLSNRLS 439 (739)
T ss_pred HHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhHHHHhhhcHHHHHHHHH--HHHHHHHHHH
Q 006565 378 RERAEAAAARKGKSEFENLAMERMAVIERVQRQIE-------SLERQKTDLTNEVNRIRESELEALSK--VALLEARVEE 448 (640)
Q Consensus 378 ~areead~aq~E~~elQr~~~qrlaeIerl~~qIE-------~lEre~e~Le~E~~~l~~sEl~al~k--v~~lE~~vee 448 (640)
.+ -..+..++-......+-..--..+.. .+.-++..|-.+.+++. +|++-... -..+-.--+.
T Consensus 440 yA-------vrrv~tiqGL~Ark~Alaqlrqe~~~~~pp~~~dL~~ELqqLReERdRl~-aeLqlSa~liqqeV~~ArEq 511 (739)
T PF07111_consen 440 YA-------VRRVHTIQGLMARKLALAQLRQEQCPPSPPSVTDLSLELQQLREERDRLD-AELQLSARLIQQEVGRAREQ 511 (739)
T ss_pred HH-------hcccchhHHHHHHHHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhh
Q 006565 449 REKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQELTKA 513 (640)
Q Consensus 449 ~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~l~e~nrrleal~~e~~~lqs~id~Leg~~~~~ 513 (640)
-+.+...| .....++...+......+.+...++..+...+.....+-..+...+.-.+......
T Consensus 512 geaE~~~L-se~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~lqes~eea~~lR~EL~~QQ~~y~~a 575 (739)
T PF07111_consen 512 GEAERQQL-SEVAQQLEQELQEKQESLAELEEQLEAARKSLQESTEEAAELRRELTQQQEVYERA 575 (739)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
No 287
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=65.67 E-value=1.8e+02 Score=30.54 Aligned_cols=41 Identities=17% Similarity=0.261 Sum_probs=28.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 195 RSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAAL 235 (640)
Q Consensus 195 Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAe 235 (640)
|....+.+|..+-.+.++.+-.+.+.+..|+.+....-.-.
T Consensus 8 rVq~eLe~LN~atd~IN~lE~~L~~ar~~fr~~l~e~~~kL 48 (239)
T PF05276_consen 8 RVQEELEKLNQATDEINRLENELDEARATFRRLLSESTKKL 48 (239)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777777777777777777777766555444
No 288
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.64 E-value=2.5e+02 Score=32.20 Aligned_cols=64 Identities=19% Similarity=0.161 Sum_probs=32.8
Q ss_pred HhhhcchHHhHHhhHHhHHhhhhhhHHHHHHHHHHHhHhhHhhHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 140 QGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEE 219 (640)
Q Consensus 140 ~~k~~s~ee~~~~l~k~le~~~~e~~ew~~kYe~~~~~~k~~~~~~AAGIsklK~Rkkeae~RL~at~enL~RVkDel~E 219 (640)
...-+|=++.+.++..+++... . -.++..+..+.+.-++++++.+..--+... .+.+.+..+.|
T Consensus 223 ~~passe~ee~eel~eq~eene-----------e----l~ae~kqh~v~~~ales~~sq~~e~~selE-~llklkerl~e 286 (521)
T KOG1937|consen 223 AKPASSEEEEVEELTEQNEENE-----------E----LQAEYKQHLVEYKALESKRSQFEEQNSELE-KLLKLKERLIE 286 (521)
T ss_pred CCCccccchhHHHHHhhhhhHH-----------H----HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-HHHHhHHHHHH
Confidence 3444555566667777766651 1 233344456666666666666554433333 44444433333
No 289
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=65.21 E-value=1.7e+02 Score=30.13 Aligned_cols=119 Identities=18% Similarity=0.153 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 006565 327 AQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIER 406 (640)
Q Consensus 327 ies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~areead~aq~E~~elQr~~~qrlaeIer 406 (640)
+.++...+..+.+-++.++. -..++.+.......|..+..++..+..++...+.|...-..+|++..++++.-..
T Consensus 11 ~d~lq~~i~~as~~lNd~TG-----Ys~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqRK~s 85 (207)
T PF05546_consen 11 MDSLQETIFTASQALNDVTG-----YSEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQRKHS 85 (207)
T ss_pred HHHHHHHHHHHHHHHHhccC-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 33444444444444444422 1445556677777788888888888888888888888888888888877763111
Q ss_pred HHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 407 VQRQIESLERQKTDLTNEVNRIRESELEALSKVALLEARVEEREKEI 453 (640)
Q Consensus 407 l~~qIE~lEre~e~Le~E~~~l~~sEl~al~kv~~lE~~vee~e~ei 453 (640)
= .=..++| ...|-+.-......|.++-..+...|..++.....+
T Consensus 86 W--s~~DleR-FT~Lyr~dH~~e~~e~~ak~~l~~aE~~~e~~~~~L 129 (207)
T PF05546_consen 86 W--SPADLER-FTELYRNDHENEQAEEEAKEALEEAEEKVEEAFDDL 129 (207)
T ss_pred C--ChHHHHH-HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 1123333 344433333344233333333666666555554433
No 290
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=64.95 E-value=97 Score=27.15 Aligned_cols=69 Identities=14% Similarity=0.193 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 271 MKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKV 342 (640)
Q Consensus 271 ie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~ 342 (640)
++.++.+|...-+.++..+..-.+++.+|....+++...++.+-.|+.....++.. |+.++..|+.++.
T Consensus 6 Ld~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~---YEeEI~rLr~eLe 74 (79)
T PF08581_consen 6 LDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQ---YEEEIARLRRELE 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 45677888888888888888888888889999999999999999998888887754 5667776666654
No 291
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.58 E-value=94 Score=26.84 Aligned_cols=70 Identities=21% Similarity=0.239 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 006565 439 VALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQE 509 (640)
Q Consensus 439 v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~l~e~nrrleal~~e~~~lqs~id~Leg~ 509 (640)
+..|+..|...-..|.-| +.+++++++.-..|..+..+.+.+.....++-+.++.++..-|..|.+|=|-
T Consensus 6 ~ekLE~KiqqAvdTI~LL-QmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLGk 75 (79)
T COG3074 6 FEKLEAKVQQAIDTITLL-QMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLGK 75 (79)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456666776666666633 7777777777777777777777788888888888888888888777776553
No 292
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=64.13 E-value=2.6e+02 Score=31.87 Aligned_cols=42 Identities=7% Similarity=0.127 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 308 SQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYK 349 (640)
Q Consensus 308 ~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~ 349 (640)
.++-++..|...-..+.+.+..+...+..|..+...+.+.++
T Consensus 301 nlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE 342 (502)
T KOG0982|consen 301 NLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLE 342 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 333344444444444444444444444444444444433333
No 293
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=64.12 E-value=2.2e+02 Score=31.06 Aligned_cols=138 Identities=20% Similarity=0.221 Sum_probs=67.0
Q ss_pred HHHHHHHHHHhhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 378 RERAEAAAARKGKSEFENLA----MERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVALLEARVEEREKEI 453 (640)
Q Consensus 378 ~areead~aq~E~~elQr~~----~qrlaeIerl~~qIE~lEre~e~Le~E~~~l~~sEl~al~kv~~lE~~vee~e~ei 453 (640)
..-.+++..-.-+.++..-+ .-..+ +-.+++++..|..+.--|++++.+..++ -+||...-.
T Consensus 32 QKV~EVEKLsqTi~ELEEaiLagGaaaNa-vrdYqrq~~elneEkrtLeRELARaKV~-----------aNRVA~vvA-- 97 (351)
T PF07058_consen 32 QKVLEVEKLSQTIRELEEAILAGGAAANA-VRDYQRQVQELNEEKRTLERELARAKVS-----------ANRVATVVA-- 97 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhh-----------hhhhhhhhc--
Confidence 33334444444444444444 22233 6667777777777777777777776621 112211110
Q ss_pred HHHHHhhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhcccccccchhhhh
Q 006565 454 ESLLESNN------EQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQELTKARLNETALGSKLRAV 527 (640)
Q Consensus 454 E~L~~~~~------eq~~~~l~~le~~le~~re~l~e~nrrleal~~e~~~lqs~id~Leg~~~~~~~~et~l~~~~k~~ 527 (640)
.++ +..+ .|--+..--|+.++.-+++.|+.+.|-+.+=..-.+-+|-.+..|+.-+..+-.+=+.--+.-++.
T Consensus 98 NEW-KD~nDkvMPVKqWLEERR~lQgEmQ~LrDKLAiaERtAkaEaQLkeK~klRLK~LEe~Lk~~~s~~~~~~~~~~s~ 176 (351)
T PF07058_consen 98 NEW-KDENDKVMPVKQWLEERRFLQGEMQQLRDKLAIAERTAKAEAQLKEKLKLRLKVLEEGLKGSSSNSSRPTSEGKSP 176 (351)
T ss_pred ccc-cccCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcCCCCC
Confidence 011 1110 111222233666677777777777776666555555666666665443332222222222345565
Q ss_pred hcc
Q 006565 528 SHG 530 (640)
Q Consensus 528 ~~~ 530 (640)
+.|
T Consensus 177 ~~g 179 (351)
T PF07058_consen 177 SNG 179 (351)
T ss_pred CCC
Confidence 555
No 294
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=63.44 E-value=67 Score=32.03 Aligned_cols=133 Identities=14% Similarity=0.236 Sum_probs=72.6
Q ss_pred CCCCcchhhHH----HHHHHHHHhhhhcccCCchHH-HHHHHHHHhhhc------hHHHHHHHHHhHHHhHHHHHHhhhc
Q 006565 23 HSSDASIDNVV----KVLDGLISEYETSCHGPGKWQ-KLATFLQQSSEG------PILDLVKRLIDQIGSERSSLMLKYR 91 (640)
Q Consensus 23 ~~~~a~~~~~~----~~l~~~l~~y~~s~~G~g~~~-k~~~~L~~~l~~------~~~d~~~~~~~~i~~~~~~l~~~c~ 91 (640)
.-|+.+|+.|- .|...++..|..+--=...|- .+-..|-....+ .|..|--.++..|
T Consensus 33 ~Qp~v~~s~i~~~~~~l~~~l~~~q~~ak~ha~~w~d~~~P~ii~~~~~I~~Y~~~f~syY~~L~~~i------------ 100 (184)
T PF05791_consen 33 QQPDVNFSGIPSKLSDLQKDLVQHQKTAKEHAKEWLDTIKPQIIDLNQDIINYNTTFQSYYDTLVEAI------------ 100 (184)
T ss_dssp HS-----SS--TT-TTHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
T ss_pred cCCCCCCccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
Confidence 34777777665 444555555555444444554 333222222221 2344444444444
Q ss_pred CchhHHHHHHHHHHhhHHhHHHHHHHhhHHhHHHHHhhHHHHHHHHhHHhhhcchHHhHHhhHHhHHhhhhhhHHHH
Q 006565 92 SIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWK 168 (640)
Q Consensus 92 s~~~k~~~~~k~le~~~k~~~~~~k~~e~~i~d~kk~~~~~~~~~~~l~~k~~s~ee~~~~l~k~le~~~~e~~ew~ 168 (640)
.....+.+...|+.+......++..-.+.|.+|...-+......++|......+...+..-.--++..+++..+++
T Consensus 101 -d~~~~~~~~~~i~~L~~~i~~~q~~~~~~i~~L~~f~~~l~~D~~~l~~~~~~l~~~l~~~~g~I~~L~~~I~~~~ 176 (184)
T PF05791_consen 101 -DQKDKEDLKEIIEDLQDQIQKNQDKVQALINELNDFKDKLQKDSRNLKTDVDELQSILAGENGDIPQLQKQIENLN 176 (184)
T ss_dssp -HHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHT
T ss_pred -CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccCCHHHHHHHHHHHH
Confidence 4445677777888888888888888888888888888777777777777766666655555555555554444433
No 295
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=63.39 E-value=50 Score=31.52 Aligned_cols=88 Identities=18% Similarity=0.160 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhcccc
Q 006565 439 VALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQELTKARLNET 518 (640)
Q Consensus 439 v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~l~e~nrrleal~~e~~~lqs~id~Leg~~~~~~~~et 518 (640)
+..|-.|++-+...+..+ ......+.+.+..+..---.....+.+..++--.++-.+=.+-.+++.+.+...++.-.|-
T Consensus 32 F~dL~~R~~~Q~~~~~~~-~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~v~~~~eilr~~g~~l~~eEe 110 (141)
T PF13874_consen 32 FEDLKKRVEAQEEEIAQH-RERLKEINDKLEELQKHDLETSARLEEARRRHQELSHRLLRVLRKQEILRNRGYALSPEEE 110 (141)
T ss_dssp --------------HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 667777777788777777 7777777777777766666666777777777777777777777888888888888888999
Q ss_pred cccchhhhh
Q 006565 519 ALGSKLRAV 527 (640)
Q Consensus 519 ~l~~~~k~~ 527 (640)
.|.++|.+.
T Consensus 111 ~L~~~le~l 119 (141)
T PF13874_consen 111 ELRKRLEAL 119 (141)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 999998885
No 296
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=63.26 E-value=1.3e+02 Score=27.84 Aligned_cols=46 Identities=17% Similarity=0.156 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhH
Q 006565 264 LAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQ 309 (640)
Q Consensus 264 le~kE~kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~l 309 (640)
+..+.+....++.-..+-...-..++..|...+..|+..+.++..+
T Consensus 7 YsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL 52 (102)
T PF10205_consen 7 YSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSL 52 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444333333
No 297
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=63.14 E-value=1.9e+02 Score=29.79 Aligned_cols=63 Identities=19% Similarity=0.283 Sum_probs=25.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHH
Q 006565 257 REEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEK 319 (640)
Q Consensus 257 ree~~s~le~kE~kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ek 319 (640)
...-..+|--+...+...++.+...+..+..++..+....-++..+++++.....++..|.++
T Consensus 26 ~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrek 88 (202)
T PF06818_consen 26 VNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREK 88 (202)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhh
Confidence 333333344444444444444444444444444444334334444444443333333333333
No 298
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=63.02 E-value=1.4e+02 Score=28.39 Aligned_cols=34 Identities=12% Similarity=0.276 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 006565 439 VALLEARVEEREKEIESLLESNNEQRASTVKKLED 473 (640)
Q Consensus 439 v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~ 473 (640)
...|.+||+.....+++. ..-.++.++.|..+..
T Consensus 63 KkhLsqRId~vd~klDe~-~ei~~~i~~eV~~v~~ 96 (126)
T PF07889_consen 63 KKHLSQRIDRVDDKLDEQ-KEISKQIKDEVTEVRE 96 (126)
T ss_pred HHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHh
Confidence 344445555555555555 3333444444433333
No 299
>PRK12704 phosphodiesterase; Provisional
Probab=62.74 E-value=3e+02 Score=32.05 Aligned_cols=6 Identities=0% Similarity=0.468 Sum_probs=3.1
Q ss_pred ccccCc
Q 006565 545 VQEMDT 550 (640)
Q Consensus 545 v~d~~~ 550 (640)
++|++-
T Consensus 367 LHDIGK 372 (520)
T PRK12704 367 LHDIGK 372 (520)
T ss_pred HHccCc
Confidence 555544
No 300
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=62.07 E-value=61 Score=33.54 Aligned_cols=10 Identities=20% Similarity=0.076 Sum_probs=7.6
Q ss_pred HhhhHHHHhh
Q 006565 185 VCSEIEVLKS 194 (640)
Q Consensus 185 ~AAGIsklK~ 194 (640)
|.+|.+-|=.
T Consensus 101 YisGf~LFL~ 110 (216)
T KOG1962|consen 101 YISGFVLFLS 110 (216)
T ss_pred HHhHHHHHHH
Confidence 8888887754
No 301
>PRK04406 hypothetical protein; Provisional
Probab=61.98 E-value=63 Score=27.94 Aligned_cols=50 Identities=16% Similarity=0.141 Sum_probs=27.2
Q ss_pred hhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 300 RSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYK 349 (640)
Q Consensus 300 k~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~ 349 (640)
...+..|..|+.++.+...-.+.++..+.....++..|...+..|.+++.
T Consensus 7 ~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~ 56 (75)
T PRK04406 7 EQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVK 56 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555555555555544443
No 302
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=61.85 E-value=96 Score=27.87 Aligned_cols=86 Identities=21% Similarity=0.274 Sum_probs=59.6
Q ss_pred HHHHHHHHhhhchHHHHHHHHHhHHHhHHHHHHhhhcCchhHHHHHHHHHHhhHHhHHHHHHHhhHHhHHHHHhhHHHHH
Q 006565 55 KLATFLQQSSEGPILDLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTS 134 (640)
Q Consensus 55 k~~~~L~~~l~~~~~d~~~~~~~~i~~~~~~l~~~c~s~~~k~~~~~k~le~~~k~~~~~~k~~e~~i~d~kk~~~~~~~ 134 (640)
+...|++--+.+...||. -++.|...-...|..+.+....+.+-++.+..... .+..+-+.+|.+..
T Consensus 7 ~~~~~v~~el~~t~~d~~-----LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~--------~l~~~l~~Id~Ie~ 73 (99)
T PF10046_consen 7 KVSKYVESELEATNEDYN-----LLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYE--------ELQPYLQQIDQIEE 73 (99)
T ss_pred HHHHHHHHhHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH
Confidence 677889999998888875 57888888889999888888888887776653332 23334445566666
Q ss_pred HHHhHHhhhcchHHhHHhh
Q 006565 135 RINNLQGENISLREKSSSL 153 (640)
Q Consensus 135 ~~~~l~~k~~s~ee~~~~l 153 (640)
+.+.|..-..-|++-+..|
T Consensus 74 ~V~~LE~~v~~LD~ysk~L 92 (99)
T PF10046_consen 74 QVTELEQTVYELDEYSKEL 92 (99)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666666555555544443
No 303
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=61.82 E-value=3.5e+02 Score=32.45 Aligned_cols=82 Identities=16% Similarity=0.170 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 284 CLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCK 363 (640)
Q Consensus 284 ~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rle 363 (640)
+.+++.....+.-.||+.++.=|...++.+..-++-+..----..+++.+--.|-.++.+|.-++...++.-.+..+++-
T Consensus 126 QvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqellsrtsLETqKlDLmaevSeLKLkltalEkeq~e~E~K~R 205 (861)
T KOG1899|consen 126 QVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQELLSRTSLETQKLDLMAEVSELKLKLTALEKEQNETEKKLR 205 (861)
T ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHhhhhHHHHHhHHHHHHHHhHHHHHHHHHHhhhHHHHHH
Confidence 34555556666666666666666666665555555444444444555555555555555555555544444333333333
Q ss_pred HH
Q 006565 364 VA 365 (640)
Q Consensus 364 ea 365 (640)
-.
T Consensus 206 ~s 207 (861)
T KOG1899|consen 206 LS 207 (861)
T ss_pred hH
Confidence 33
No 304
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=61.80 E-value=1.7e+02 Score=28.81 Aligned_cols=62 Identities=15% Similarity=0.141 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 006565 346 QKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERV 407 (640)
Q Consensus 346 ekl~se~er~ee~~~rleeaEee~kea~e~~~~areead~aq~E~~elQr~~~qrlaeIerl 407 (640)
..+..+.++++.+...++-+-.-|.....++..+.+.+..+.+++..+-..++++..+-+++
T Consensus 84 kEv~~vRkkID~vNreLkpl~~~cqKKEkEykealea~nEknkeK~~Lv~~L~eLv~eSE~~ 145 (159)
T PF04949_consen 84 KEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNKEKAQLVTRLMELVSESERL 145 (159)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555555555555555555555555555555666666666666666554444
No 305
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=61.36 E-value=1.4e+02 Score=30.94 Aligned_cols=25 Identities=8% Similarity=0.194 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 354 RFEEVQERCKVAEKEAKKATELADR 378 (640)
Q Consensus 354 r~ee~~~rleeaEee~kea~e~~~~ 378 (640)
....+.+..++...++.++.++...
T Consensus 180 ~~~al~Kq~e~~~~EydrLlee~~~ 204 (216)
T KOG1962|consen 180 KVDALKKQSEGLQDEYDRLLEEYSK 204 (216)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHH
Confidence 3333333333333333333333333
No 306
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=61.29 E-value=1.2e+02 Score=30.16 Aligned_cols=54 Identities=15% Similarity=0.318 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 329 SFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAE 382 (640)
Q Consensus 329 s~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~aree 382 (640)
.+..+...|+.++..|..+...+..++..+..++...++.++..-...++|+..
T Consensus 101 ~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RARkl 154 (161)
T TIGR02894 101 ALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRARKL 154 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444445555555555555555555555443
No 307
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=61.20 E-value=2.1e+02 Score=29.67 Aligned_cols=44 Identities=14% Similarity=0.259 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHH
Q 006565 395 NLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSK 438 (640)
Q Consensus 395 r~~~qrlaeIerl~~qIE~lEre~e~Le~E~~~l~~sEl~al~k 438 (640)
.....|...+..+...++.+.+....-.......=..|+.++..
T Consensus 168 ~Ek~~Re~~~~~l~~~le~~~~~~~~~~e~f~~~v~~Ei~~lk~ 211 (247)
T PF06705_consen 168 KEKNTRESKLSELRSELEEVKRRREKGDEQFQNFVLEEIAALKN 211 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555444444444422255555555
No 308
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=60.81 E-value=2.9e+02 Score=31.18 Aligned_cols=34 Identities=21% Similarity=0.342 Sum_probs=23.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 257 REEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRL 290 (640)
Q Consensus 257 ree~~s~le~kE~kie~~k~ei~~aEq~la~~q~ 290 (640)
...+.....|+...+..+...+..++........
T Consensus 190 ~~~~~~~~~~l~~~l~~lr~~~~~ae~~~~~~~~ 223 (458)
T COG3206 190 LEAFRRASDSLDERLEELRARLQEAEAQVEDFRA 223 (458)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666667777777777777777777766666543
No 309
>PRK02119 hypothetical protein; Provisional
Probab=60.70 E-value=58 Score=27.96 Aligned_cols=51 Identities=18% Similarity=0.160 Sum_probs=27.4
Q ss_pred HhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 299 MRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYK 349 (640)
Q Consensus 299 Ik~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~ 349 (640)
|...+..+..|+.++.+.+.-.+.++..+....+++..|...+..|.+++.
T Consensus 4 ~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~ 54 (73)
T PRK02119 4 QQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLK 54 (73)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555555555555555555544443
No 310
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=60.29 E-value=2.9e+02 Score=31.19 Aligned_cols=81 Identities=17% Similarity=0.169 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 006565 203 LAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAI-VQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHA 281 (640)
Q Consensus 203 L~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a~-L~er~~~~~q~r~~a~ree~~s~le~kE~kie~~k~ei~~a 281 (640)
|.+..+-|..+++-..-+...|+.|+.|-++.-.=+.. |++. .-|-.-|-+++....+--.++|-.++.++.-+
T Consensus 262 l~aileeL~eIk~~q~~Leesye~Lke~~krdy~fi~etLQEE-----RyR~erLEEqLNdlteLqQnEi~nLKqElasm 336 (455)
T KOG3850|consen 262 LDAILEELREIKETQALLEESYERLKEQIKRDYKFIAETLQEE-----RYRYERLEEQLNDLTELQQNEIANLKQELASM 336 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888999999999998887633222 2211 01101112222222222345555666666666
Q ss_pred HHHHHHH
Q 006565 282 EQCLTTL 288 (640)
Q Consensus 282 Eq~la~~ 288 (640)
+.+.+.+
T Consensus 337 eervaYQ 343 (455)
T KOG3850|consen 337 EERVAYQ 343 (455)
T ss_pred HHHHHHH
Confidence 6665554
No 311
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=60.28 E-value=75 Score=37.93 Aligned_cols=82 Identities=15% Similarity=0.133 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhcccc
Q 006565 439 VALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQELTKARLNET 518 (640)
Q Consensus 439 v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~l~e~nrrleal~~e~~~lqs~id~Leg~~~~~~~~et 518 (640)
+...+..|......++.. ..+++.+...+..+...|...++.++....+=..++.+..-.+.+++.|++++..+.+.+.
T Consensus 25 l~~s~~~v~~l~~~ld~a-~~e~d~le~~l~~y~~~L~~~~~di~~IE~qn~~Lqvq~~N~k~L~~eL~~Ll~~l~i~~~ 103 (701)
T PF09763_consen 25 LLESEKQVNSLMEYLDEA-LAECDELESWLSLYDVELNSVRDDIEYIESQNNGLQVQSANQKLLLNELENLLDTLSIPEE 103 (701)
T ss_pred HHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHhcCCCHH
Confidence 666677777777777777 7777777999999999999999999999988888888888888888999999999988877
Q ss_pred ccc
Q 006565 519 ALG 521 (640)
Q Consensus 519 ~l~ 521 (640)
.|.
T Consensus 104 ~l~ 106 (701)
T PF09763_consen 104 HLE 106 (701)
T ss_pred HHH
Confidence 443
No 312
>PLN02939 transferase, transferring glycosyl groups
Probab=60.27 E-value=4.4e+02 Score=33.19 Aligned_cols=54 Identities=17% Similarity=0.259 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 326 KAQSFEREARIMEQDKVYLEQKYKSEFER--------FEEVQERCKVAEKEAKKATELADRE 379 (640)
Q Consensus 326 eies~e~el~~L~~ei~~L~ekl~se~er--------~ee~~~rleeaEee~kea~e~~~~a 379 (640)
.+-.++++...|...+.+|+.++...... ++-+-++.++++.-+..+...++.|
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (977)
T PLN02939 258 RVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLDRATNQVEKA 319 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666666666666555532 2334444444444444444444444
No 313
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=60.27 E-value=1.8e+02 Score=28.77 Aligned_cols=109 Identities=22% Similarity=0.153 Sum_probs=62.7
Q ss_pred ccCCchHH-HHHHHHHHhhh-chHHHHHHHHH--------hHHHhHHHH------HHhhhcCchhHHHHHHHHHHhhHHh
Q 006565 47 CHGPGKWQ-KLATFLQQSSE-GPILDLVKRLI--------DQIGSERSS------LMLKYRSIEDNMKLLKKQLEDSERY 110 (640)
Q Consensus 47 ~~G~g~~~-k~~~~L~~~l~-~~~~d~~~~~~--------~~i~~~~~~------l~~~c~s~~~k~~~~~k~le~~~k~ 110 (640)
+-.|+.|| ++-.|+..++. +.+--+..=.+ |.+..+.+- ....+..++ ..+.-...
T Consensus 24 lPlp~~~R~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lf~ds~~~~~k~~~~~~~~~~~~~~~~--------~~~~~~~~ 95 (192)
T PF05529_consen 24 LPLPSPIRRKIFKFLDKSFFSGKFKTVFKILLAILLLLFLDSIRRMYKYSSEYEEAKDDHPNPD--------RTEDQVLA 95 (192)
T ss_pred HhCCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCCcc--------chhHHHHH
Confidence 34799999 77777765543 33433333322 555554432 111222222 22333346
Q ss_pred HHHHHHH---hhHHhHHHHHhhHHHHHHHHhHHhhhcchHHhHHhhHHhHHhhhhhhHHH
Q 006565 111 KSEYLKR---YDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDW 167 (640)
Q Consensus 111 ~~~~~k~---~e~~i~d~kk~~~~~~~~~~~l~~k~~s~ee~~~~l~k~le~~~~e~~ew 167 (640)
+.||-|| .-|.+.=+-=.+. +.-.+-.....+++++..+.+|..++......|
T Consensus 96 ~~fraQRN~YIsGf~LfL~l~I~----r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~ 151 (192)
T PF05529_consen 96 KKFRAQRNMYISGFALFLSLVIR----RVHSLIKELIKLEEKLEALKKQAESASEAAEKL 151 (192)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 6788887 5676666643433 344566677778888888888887776666655
No 314
>PRK09343 prefoldin subunit beta; Provisional
Probab=60.06 E-value=1.5e+02 Score=27.67 Aligned_cols=15 Identities=13% Similarity=0.264 Sum_probs=7.2
Q ss_pred HHHHHHhHHHHhhhc
Q 006565 415 ERQKTDLTNEVNRIR 429 (640)
Q Consensus 415 Ere~e~Le~E~~~l~ 429 (640)
-++.+....++..+.
T Consensus 37 ~~e~~~~~~EL~~L~ 51 (121)
T PRK09343 37 LREINKALEELEKLP 51 (121)
T ss_pred HHHHHHHHHHHHcCC
Confidence 334444445555555
No 315
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=59.70 E-value=2.4e+02 Score=30.01 Aligned_cols=37 Identities=16% Similarity=0.173 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 006565 469 KKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDE 505 (640)
Q Consensus 469 ~~le~~le~~re~l~e~nrrleal~~e~~~lqs~id~ 505 (640)
......+..-|+.+++....+..|+.+++.++...-+
T Consensus 189 ~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~~~ 225 (258)
T PF15397_consen 189 QVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQAQD 225 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3355555666666666666666565555555555544
No 316
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=59.10 E-value=3.1e+02 Score=30.99 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=9.6
Q ss_pred HhHHHHHhhHHHHHHHHhHHhhh
Q 006565 121 AINDKKKLADDYTSRINNLQGEN 143 (640)
Q Consensus 121 ~i~d~kk~~~~~~~~~~~l~~k~ 143 (640)
.|..++|=.++|-.+..+|..-+
T Consensus 63 ~i~~lqkkL~~y~~~l~ele~~~ 85 (395)
T PF10267_consen 63 TIAQLQKKLEQYHKRLKELEQGG 85 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC
Confidence 34444333344444444444443
No 317
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=58.96 E-value=3e+02 Score=31.43 Aligned_cols=39 Identities=18% Similarity=0.246 Sum_probs=26.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 006565 385 AARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTN 423 (640)
Q Consensus 385 ~aq~E~~elQr~~~qrlaeIerl~~qIE~lEre~e~Le~ 423 (640)
....+....+++.++....+..+..+++-.+.+.+.|..
T Consensus 229 ~~~~ey~~~~~q~~~~~del~Sle~q~~~s~~qldkL~k 267 (447)
T KOG2751|consen 229 QYWREYNNFQRQLIEHQDELDSLEAQIEYSQAQLDKLRK 267 (447)
T ss_pred HHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHh
Confidence 346666777777777777777777777776666555543
No 318
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=58.81 E-value=1.4e+02 Score=26.80 Aligned_cols=60 Identities=15% Similarity=0.127 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhc
Q 006565 370 KKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIR 429 (640)
Q Consensus 370 kea~e~~~~areead~aq~E~~elQr~~~qrlaeIerl~~qIE~lEre~e~Le~E~~~l~ 429 (640)
......++.....+.....+...++..++.+.+++...+...-.+.|..+.+..+...|+
T Consensus 6 ~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~ 65 (96)
T PF08647_consen 6 VSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLN 65 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 334444444455555556777777777777777777777777777777777777776666
No 319
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=58.72 E-value=2.3e+02 Score=31.94 Aligned_cols=43 Identities=14% Similarity=0.121 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhHHHHHhhHH
Q 006565 268 EEEMKEKATKIEHAEQCLTTL-RLELKAAESKMRSYEVEISSQK 310 (640)
Q Consensus 268 E~kie~~k~ei~~aEq~la~~-q~eL~e~e~kIk~~e~ei~~le 310 (640)
.++|..+++++..+|.+++.. ...+.++.+-|..+.+.|..++
T Consensus 275 q~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 275 QNEIYNLKQELASMEEKMAYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 556666666666666666655 2223444444444444444443
No 320
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=58.50 E-value=1.1e+02 Score=25.92 Aligned_cols=61 Identities=16% Similarity=0.267 Sum_probs=48.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 306 ISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAE 366 (640)
Q Consensus 306 i~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaE 366 (640)
+..++.++..|-..+..+..+=..+..+...+..+..+|.++.+.+..+++..-.++...+
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~le 62 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 4566777777888888888888888888888888888888888888888888877777654
No 321
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=58.27 E-value=7.7 Score=42.20 Aligned_cols=116 Identities=20% Similarity=0.308 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhHHHHhhhcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 411 IESLERQKTDLTNEVNRIRESELEALSK-VALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMA 489 (640)
Q Consensus 411 IE~lEre~e~Le~E~~~l~~sEl~al~k-v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~l~e~nrrl 489 (640)
+..+|-.+..|.+.+..+. +.+..++. +..+..-|.+...++..+ ...+..++..|..+...+..+...+..-...+
T Consensus 37 LsaLEssv~sL~~SVs~ls-s~iSdLss~L~~l~~sl~~~~s~L~sL-sstV~~lq~Sl~~lsssVs~lS~~ls~h~ssI 114 (326)
T PF04582_consen 37 LSALESSVASLSDSVSSLS-STISDLSSDLQDLASSLADMTSELNSL-SSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSI 114 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhH
Confidence 3444444444444444444 44444444 555555555555555555 55555556777777777777777777777778
Q ss_pred HHhhHHHHHHHHHHHHHHHHhhhhhcccccccchhhhhh
Q 006565 490 ERLSLEVQSAQAKLDEMQQELTKARLNETALGSKLRAVS 528 (640)
Q Consensus 490 eal~~e~~~lqs~id~Leg~~~~~~~~et~l~~~~k~~~ 528 (640)
..++-.+..+...|.||++=....-++=|-|++++++.-
T Consensus 115 S~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~LE 153 (326)
T PF04582_consen 115 SDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKALE 153 (326)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHHh
Confidence 888888888888888888888888888899999999843
No 322
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=57.99 E-value=3.3e+02 Score=30.99 Aligned_cols=56 Identities=14% Similarity=0.189 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 313 TKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKE 368 (640)
Q Consensus 313 l~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee 368 (640)
...+..++..++.++...++....+..++.-+.-...+++.+|...+-.+..++++
T Consensus 8 ~s~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e 63 (459)
T KOG0288|consen 8 KSENDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEE 63 (459)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555666666665555555555555444444444444444444333333
No 323
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=57.89 E-value=1e+02 Score=26.99 Aligned_cols=33 Identities=36% Similarity=0.489 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 006565 439 VALLEARVEEREKEIESLLESNNEQRASTVKKLE 472 (640)
Q Consensus 439 v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le 472 (640)
...++.+++..+.+++.| ......+..++..++
T Consensus 64 ~~~L~~~~~~~~~~i~~l-~~~~~~l~~~l~~~~ 96 (106)
T PF01920_consen 64 IEELEERIEKLEKEIKKL-EKQLKYLEKKLKELK 96 (106)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 445555555555555555 333333333333333
No 324
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=57.64 E-value=1.6e+02 Score=27.19 Aligned_cols=67 Identities=6% Similarity=0.187 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 276 TKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKV 342 (640)
Q Consensus 276 ~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~ 342 (640)
.+...+....+++.+.+.+-..+-..+...++..+..|+.+....+++...-..+.+++..|..++.
T Consensus 5 ~eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 5 QEYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445556666666666666666666666666666666666666666666666666666666665
No 325
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=57.62 E-value=2.8e+02 Score=30.14 Aligned_cols=43 Identities=19% Similarity=0.181 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 006565 439 VALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSR 482 (640)
Q Consensus 439 v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~l 482 (640)
+......+.+...++... +...++..+.+......|..+.+..
T Consensus 129 ~~~~t~~la~~t~~L~~~-~~~l~q~~~k~~~~q~~l~~~~~~~ 171 (301)
T PF06120_consen 129 QADATRKLAEATRELAVA-QERLEQMQSKASETQATLNDLTEQR 171 (301)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444 4444444555555555554444433
No 326
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=57.58 E-value=2.1e+02 Score=28.70 Aligned_cols=24 Identities=29% Similarity=0.635 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhhc
Q 006565 406 RVQRQIESLERQKTDLTNEVNRIR 429 (640)
Q Consensus 406 rl~~qIE~lEre~e~Le~E~~~l~ 429 (640)
.+...|..++.++..|...+..+.
T Consensus 124 ~l~~~i~~L~~e~~~L~~~~~~l~ 147 (189)
T PF10211_consen 124 ELEEEIEELEEEKEELEKQVQELK 147 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444333333333333
No 327
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=57.07 E-value=4.2e+02 Score=31.95 Aligned_cols=43 Identities=14% Similarity=0.103 Sum_probs=21.9
Q ss_pred HHHHHhHHhhhcchHHhHHhhHHhHHhhhhhhHHHHHHHHHHH
Q 006565 133 TSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVL 175 (640)
Q Consensus 133 ~~~~~~l~~k~~s~ee~~~~l~k~le~~~~e~~ew~~kYe~~~ 175 (640)
..-...+...++.+......+.-.|.........|...+...+
T Consensus 99 ~~~~~~~~~~~~~~q~~~~~~~~~l~~~~~~~~~~~~~~~s~~ 141 (670)
T KOG0239|consen 99 EAYNERLRDLLSELQSNLSELNMALLESVEELSQAEEDNPSIF 141 (670)
T ss_pred HHHHHHHhhhccccccchhhhhhhhhhhhHhhhhhhcccccHH
Confidence 3333444445555555555555555555555555555554433
No 328
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=56.78 E-value=2.6e+02 Score=29.41 Aligned_cols=152 Identities=18% Similarity=0.190 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-HHHHH-HHHHHHHHHHHHHhHHHHhhhcHHHHHH
Q 006565 358 VQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMA-VIERV-QRQIESLERQKTDLTNEVNRIRESELEA 435 (640)
Q Consensus 358 ~~~rleeaEee~kea~e~~~~areead~aq~E~~elQr~~~qrla-eIerl-~~qIE~lEre~e~Le~E~~~l~~sEl~a 435 (640)
....-..+..++..|...+++|.....+|+.-+.-+++..+.... .++-. +.-+.-.-..++.-+.++.+.. .+...
T Consensus 68 a~~~a~~aq~e~q~Aa~~yerA~~~h~aAKe~v~laEq~l~~~~~~~~D~~wqEmLn~A~~kVneAE~ek~~ae-~eH~~ 146 (239)
T PF05276_consen 68 ARRKAKEAQQEAQKAALQYERANSMHAAAKEMVALAEQSLMSDSNWTFDPAWQEMLNHATQKVNEAEQEKTRAE-REHQR 146 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 334445555555555566666655555555555555444422220 00000 0001111122333333344444 44444
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhh
Q 006565 436 LSK-VALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQELTKAR 514 (640)
Q Consensus 436 l~k-v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~l~e~nrrleal~~e~~~lqs~id~Leg~~~~~~ 514 (640)
... +...+.+|..+++.+..- ..+-.=.-+.-..++..|+..+..+......+..-+..|. .=+.+|++++..+|
T Consensus 147 ~~~~~~~ae~~v~~Lek~lkr~-I~KSrPYfe~K~~~~~~l~~~k~~v~~Le~~v~~aK~~Y~---~ALrnLE~ISeeIH 222 (239)
T PF05276_consen 147 RARIYNEAEQRVQQLEKKLKRA-IKKSRPYFELKAKFNQQLEEQKEKVEELEAKVKQAKSRYS---EALRNLEQISEEIH 222 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 444 777777777777666555 2222222233334555555555555555555555555333 34566777765543
No 329
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=56.22 E-value=5.1e+02 Score=32.60 Aligned_cols=12 Identities=8% Similarity=0.025 Sum_probs=4.9
Q ss_pred HHHHHHhHHhhh
Q 006565 132 YTSRINNLQGEN 143 (640)
Q Consensus 132 ~~~~~~~l~~k~ 143 (640)
+...+..|+.++
T Consensus 192 ~~~~~~~l~~~~ 203 (1042)
T TIGR00618 192 LHGKAELLTLRS 203 (1042)
T ss_pred HHHHHHHHHHHh
Confidence 334444444443
No 330
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=55.50 E-value=4.7e+02 Score=32.05 Aligned_cols=79 Identities=11% Similarity=0.074 Sum_probs=49.0
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 301 SYEVEISSQKLETKELSEKLEAV------------NAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKE 368 (640)
Q Consensus 301 ~~e~ei~~le~el~~L~ekle~~------------~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee 368 (640)
-+.++...|+.+++-|+.++... .-++.++..--..|+..+.+....++....+-+++-+-++...++
T Consensus 391 plrsENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~E 470 (861)
T PF15254_consen 391 PLRSENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKEE 470 (861)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHH
Confidence 33445555555555555544332 345666677777777777777777777777777777777776666
Q ss_pred HHHHHHHHHHH
Q 006565 369 AKKATELADRE 379 (640)
Q Consensus 369 ~kea~e~~~~a 379 (640)
-++..+.+...
T Consensus 471 nk~~~~~~~ek 481 (861)
T PF15254_consen 471 NKRLRKMFQEK 481 (861)
T ss_pred HHHHHHHHHHH
Confidence 66665555444
No 331
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=55.43 E-value=3.7e+02 Score=30.77 Aligned_cols=33 Identities=24% Similarity=0.276 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 006565 444 ARVEEREKEIESLLESNNEQRASTVKKLEDLLES 477 (640)
Q Consensus 444 ~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~ 477 (640)
.|+.+.+.++..| .+.+-.+.++=.+|...+-+
T Consensus 403 aRe~eleqevkrL-rq~nr~l~eqneelngtilT 435 (502)
T KOG0982|consen 403 AREIELEQEVKRL-RQPNRILSEQNEELNGTILT 435 (502)
T ss_pred HHHHHHHHHHHHh-ccccchhhhhhhhhhhhhhh
Confidence 4444455555555 44444444444444444333
No 332
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=55.02 E-value=2.7e+02 Score=29.00 Aligned_cols=61 Identities=10% Similarity=0.110 Sum_probs=35.8
Q ss_pred hhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006565 186 CSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTS 246 (640)
Q Consensus 186 AAGIsklK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a~L~er~~ 246 (640)
..+|.+..--.+-+..-+..+..+|.-++.-+..+.-.-..++.+...+......++++..
T Consensus 16 ~~~~dk~EDp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~ 76 (225)
T COG1842 16 NELLDKAEDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAE 76 (225)
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555566666666666666666666666666666666666555555555553
No 333
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=55.02 E-value=3.8e+02 Score=30.83 Aligned_cols=153 Identities=15% Similarity=0.056 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHH-HHHHHHHHHHHHHHH
Q 006565 375 LADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSK-VALLEARVEEREKEI 453 (640)
Q Consensus 375 ~~~~areead~aq~E~~elQr~~~qrlaeIerl~~qIE~lEre~e~Le~E~~~l~~sEl~al~k-v~~lE~~vee~e~ei 453 (640)
++...+-+.+-.+.+..-+|-.+..+..+|..+++|+-.++.. ...++.++. .++..+.. ...++..++-...+.
T Consensus 310 E~ee~rve~~~s~ed~~~~q~q~~~Lrs~~~d~EAq~r~l~s~---~~~q~~~~h-~~ka~~~~~~~~l~~~~ec~~~e~ 385 (554)
T KOG4677|consen 310 EFEETRVELPFSAEDSAHIQDQYTLLRSQIIDIEAQDRHLESA---GQTQIFRKH-PRKASILNMPLVLTLFYECFYHET 385 (554)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---hHHHHHHhh-hHhhhhhhchHHHHHHHHHHHHHH
Confidence 3444444455555666666777777777777776666555543 333444555 45554444 444444444443332
Q ss_pred HHH---HHhhHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 006565 454 ESL---LESNNEQRAST-----------------------VKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQ 507 (640)
Q Consensus 454 E~L---~~~~~eq~~~~-----------------------l~~le~~le~~re~l~e~nrrleal~~e~~~lqs~id~Le 507 (640)
+-. +..-+.+.++. +..+.--..-+..-+-++.-.++.+.-..+++.-.++-||
T Consensus 386 e~~~~~~~r~~~~~qski~dk~~el~kl~~~l~~r~~~~s~~~l~~~~~qLt~tl~qkq~~le~v~~~~~~ln~~lerLq 465 (554)
T KOG4677|consen 386 EAEGTFSSRVNLKKQSKIPDKQYELTKLAARLKLRAWNDSVDALFTTKNQLTYTLKQKQIGLERVVEILHKLNAPLERLQ 465 (554)
T ss_pred HHhhhhhhhccchhhccCcchHHHHHHHHHHHHHHhhhhhHHHHhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 211 01112222222 2222223333344445555566666666666666777777
Q ss_pred HHhhhhhcccccccchhhhhhccccccc
Q 006565 508 QELTKARLNETALGSKLRAVSHGKRARA 535 (640)
Q Consensus 508 g~~~~~~~~et~l~~~~k~~~~~kr~r~ 535 (640)
.+.+-++- .|.++...+.|+|.++
T Consensus 466 ~~~N~~~~----v~~~~~~n~~~~~~~~ 489 (554)
T KOG4677|consen 466 EYVNLVED----VDTKLNLNTKFKCHDV 489 (554)
T ss_pred HHhccccc----cceeeccCCCcccccc
Confidence 77653332 3334444445555544
No 334
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=54.78 E-value=3.4e+02 Score=30.12 Aligned_cols=47 Identities=13% Similarity=0.379 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHH-HHHHHHH
Q 006565 398 MERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSK-VALLEAR 445 (640)
Q Consensus 398 ~qrlaeIerl~~qIE~lEre~e~Le~E~~~l~~sEl~al~k-v~~lE~~ 445 (640)
.+|+..+..++.+....-..+..|+.....+. .++..+.. +..++..
T Consensus 318 v~RL~tL~~lH~~a~~~~~~l~~le~~q~~l~-~~l~~~~~~L~~ve~~ 365 (388)
T PF04912_consen 318 VERLKTLKSLHEEAAEFSQTLSELESQQSDLQ-SQLKKWEELLNKVEEK 365 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 66666666666666666666666666666666 66666665 5555554
No 335
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=54.74 E-value=2.3e+02 Score=28.22 Aligned_cols=125 Identities=15% Similarity=0.235 Sum_probs=85.9
Q ss_pred HHHHHHHHhhHHhHHHHHHHhhHHhHHHHHhhHHHHHH----HHhHHhhhcchHHhHHhhHHhHHhhhhhhHHHHHHHHH
Q 006565 98 KLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSR----INNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQ 173 (640)
Q Consensus 98 ~~~~k~le~~~k~~~~~~k~~e~~i~d~kk~~~~~~~~----~~~l~~k~~s~ee~~~~l~k~le~~~~e~~ew~~kYe~ 173 (640)
..|+......-.|+.+|..-+---|.++-.=+-.|... +..|-.-+ -.+--..+.+.|.....+...+..+=..
T Consensus 51 ~~l~~~q~~ak~ha~~w~d~~~P~ii~~~~~I~~Y~~~f~syY~~L~~~i--d~~~~~~~~~~i~~L~~~i~~~q~~~~~ 128 (184)
T PF05791_consen 51 KDLVQHQKTAKEHAKEWLDTIKPQIIDLNQDIINYNTTFQSYYDTLVEAI--DQKDKEDLKEIIEDLQDQIQKNQDKVQA 128 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHT-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677777777899999888777777763333333322 22222222 2344556667777777888888888888
Q ss_pred HHhHhhHhhHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 174 VLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKY 224 (640)
Q Consensus 174 ~~~~~k~~~~~~AAGIsklK~Rkkeae~RL~at~enL~RVkDel~Ewkrky 224 (640)
.+++-+...++...-...|+.....+...|......+...+..+.+.+..+
T Consensus 129 ~i~~L~~f~~~l~~D~~~l~~~~~~l~~~l~~~~g~I~~L~~~I~~~~~~I 179 (184)
T PF05791_consen 129 LINELNDFKDKLQKDSRNLKTDVDELQSILAGENGDIPQLQKQIENLNEEI 179 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 888888888888888888888888888888888888777777777665543
No 336
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=54.51 E-value=3.1e+02 Score=29.65 Aligned_cols=33 Identities=18% Similarity=0.231 Sum_probs=13.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 306 ISSQKLETKELSEKLEAVNAKAQSFEREARIME 338 (640)
Q Consensus 306 i~~le~el~~L~ekle~~~~eies~e~el~~L~ 338 (640)
|.+++-+|++...++..-.++|..+..++--..
T Consensus 70 iRHLkakLkes~~~l~dRetEI~eLksQL~RMr 102 (305)
T PF15290_consen 70 IRHLKAKLKESENRLHDRETEIDELKSQLARMR 102 (305)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444443333
No 337
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=52.67 E-value=1.4e+02 Score=27.19 Aligned_cols=26 Identities=15% Similarity=0.473 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhc
Q 006565 404 IERVQRQIESLERQKTDLTNEVNRIR 429 (640)
Q Consensus 404 Ierl~~qIE~lEre~e~Le~E~~~l~ 429 (640)
++.+...+...++++..++..+..++
T Consensus 37 ~~~l~~~~~~~~~Rl~~lE~~l~~LP 62 (106)
T PF10805_consen 37 IEKLEERLDEHDRRLQALETKLEHLP 62 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 55555556666666666666666664
No 338
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=52.36 E-value=4.3e+02 Score=30.67 Aligned_cols=65 Identities=15% Similarity=0.137 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 288 LRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEF 352 (640)
Q Consensus 288 ~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~ 352 (640)
++.+++-.+...+.+.-.|+...+++..|.......-.+|..+.++...|..+|-++=-+++...
T Consensus 339 L~~R~K~Q~q~~~~~r~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikqeilr 403 (508)
T KOG3091|consen 339 LRQRLKVQDQEVKQHRIRINAIGERVTELQKHHADAVAKIEEAKNRHVELSHRILRVMIKQEILR 403 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35556666666677777777888888888877778888999999999999999988855555544
No 339
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=51.95 E-value=1.3e+02 Score=34.51 Aligned_cols=44 Identities=11% Similarity=0.054 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 006565 465 ASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQ 508 (640)
Q Consensus 465 ~~~l~~le~~le~~re~l~e~nrrleal~~e~~~lqs~id~Leg 508 (640)
..-+.-+...+.+++.++..+.+++..+..++..++..+..+.+
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 130 FQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33344444444555555555555555555555566666655544
No 340
>PRK00106 hypothetical protein; Provisional
Probab=51.38 E-value=4.7e+02 Score=30.75 Aligned_cols=12 Identities=50% Similarity=0.517 Sum_probs=4.7
Q ss_pred HhhhhHHHHHHH
Q 006565 192 LKSRSTAAEARL 203 (640)
Q Consensus 192 lK~Rkkeae~RL 203 (640)
+|+-+..++--|
T Consensus 26 ~~~~~~~~~~~~ 37 (535)
T PRK00106 26 MKSAKEAAELTL 37 (535)
T ss_pred HhhhHHHHHHHH
Confidence 334444443333
No 341
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=51.27 E-value=4.6e+02 Score=30.66 Aligned_cols=96 Identities=21% Similarity=0.308 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
Q 006565 270 EMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREA--------RIMEQDK 341 (640)
Q Consensus 270 kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el--------~~L~~ei 341 (640)
.++.+......++...+.+-..+..+..+|-.+...+ ..+...|+.++..+..+..+.++.. ..+..-+
T Consensus 338 ~ld~LqEksqile~sv~~l~~~lkDLd~~~~aLs~rl---d~qEqtL~~rL~e~~~e~~~~~r~~lekl~~~q~e~~~~l 414 (531)
T PF15450_consen 338 ELDLLQEKSQILEDSVAELMRQLKDLDDHILALSWRL---DLQEQTLNLRLSEAKNEWESDERKSLEKLDQWQNEMEKHL 414 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334443444444444555555555555555555553 2344455566666655555544432 2344445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 342 VYLEQKYKSEFERFEEVQERCKVAEKE 368 (640)
Q Consensus 342 ~~L~ekl~se~er~ee~~~rleeaEee 368 (640)
.++.++++++-..+.++..+|...+..
T Consensus 415 ~~v~eKVd~LpqqI~~vs~Kc~~~Ksd 441 (531)
T PF15450_consen 415 KEVQEKVDSLPQQIEEVSDKCDLHKSD 441 (531)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhh
Confidence 555666666666666666666655443
No 342
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=51.09 E-value=3.6e+02 Score=29.32 Aligned_cols=28 Identities=11% Similarity=-0.083 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006565 218 EEWKRKYGVAVREAKAALEKAAIVQERT 245 (640)
Q Consensus 218 ~Ewkrky~~L~~QAKkAeek~a~L~er~ 245 (640)
.=++.++..+..+...|+.++...+++.
T Consensus 173 ~fl~~ql~~~~~~l~~ae~~l~~fr~~~ 200 (362)
T TIGR01010 173 AFAENEVKEAEQRLNATKAELLKYQIKN 200 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3334444444444445554555544443
No 343
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=50.65 E-value=2.8e+02 Score=27.96 Aligned_cols=22 Identities=18% Similarity=0.182 Sum_probs=11.6
Q ss_pred HhhhhHHHHHHHHHHHHHHHHH
Q 006565 192 LKSRSTAAEARLAAAREQALSA 213 (640)
Q Consensus 192 lK~Rkkeae~RL~at~enL~RV 213 (640)
|-..+.....++..+......+
T Consensus 18 ~~~~~~~~~~~~~~A~~~A~~i 39 (201)
T PF12072_consen 18 YLVRKKINRKKLEQAEKEAEQI 39 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555666666555554433
No 344
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=50.54 E-value=2e+02 Score=26.25 Aligned_cols=42 Identities=19% Similarity=0.306 Sum_probs=21.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhh
Q 006565 387 RKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRI 428 (640)
Q Consensus 387 q~E~~elQr~~~qrlaeIerl~~qIE~lEre~e~Le~E~~~l 428 (640)
......-.+...+..++|..+..+|..+..++..++..+...
T Consensus 66 ~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~ 107 (126)
T PF13863_consen 66 EKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEEY 107 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444455556666666666666655555554444433
No 345
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=50.39 E-value=4.4e+02 Score=30.16 Aligned_cols=20 Identities=10% Similarity=0.160 Sum_probs=12.3
Q ss_pred hhHHHhhhHHHHhhhhHHHH
Q 006565 181 MEDQVCSEIEVLKSRSTAAE 200 (640)
Q Consensus 181 ~~~~~AAGIsklK~Rkkeae 200 (640)
+.=+-.+||..++.+-=..+
T Consensus 196 V~~D~~sGIi~l~V~AF~Pe 215 (434)
T PRK15178 196 VAVDIQQGMLRLNVKARSAK 215 (434)
T ss_pred EeecCCCCeEEEEEEecCHH
Confidence 33345788887777654443
No 346
>PTZ00464 SNF-7-like protein; Provisional
Probab=50.38 E-value=3e+02 Score=28.30 Aligned_cols=25 Identities=24% Similarity=0.298 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 006565 468 VKKLEDLLESERRSRAAANAMAERL 492 (640)
Q Consensus 468 l~~le~~le~~re~l~e~nrrleal 492 (640)
|...+..++.+++.+...+.--+++
T Consensus 123 id~Vd~l~Dei~E~~e~~~EI~e~L 147 (211)
T PTZ00464 123 VDKVEDLQDELADLYEDTQEIQEIM 147 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444433333
No 347
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=50.08 E-value=5.1e+02 Score=31.72 Aligned_cols=136 Identities=9% Similarity=0.081 Sum_probs=69.2
Q ss_pred HHHHHHHHhcCCCCcchhhHHHHHHHHHHhhhhcccCC--chHHHHHHHHHHhhhchHHHH------HHHHHhHHHhHHH
Q 006565 13 SMERKLRAACHSSDASIDNVVKVLDGLISEYETSCHGP--GKWQKLATFLQQSSEGPILDL------VKRLIDQIGSERS 84 (640)
Q Consensus 13 ~me~~l~~ac~~~~a~~~~~~~~l~~~l~~y~~s~~G~--g~~~k~~~~L~~~l~~~~~d~------~~~~~~~i~~~~~ 84 (640)
.|.++.-.+ ..|-.+++.|..-|+..-..+...- +| +...-+..+|+..-.|.+.+- .++.+..+..++.
T Consensus 25 ~~gk~~~~~-l~P~~~~~~i~~~l~~~~e~~~~~~-~~~l~~~~di~~~l~r~~~g~~l~~~e~l~~i~~~l~~~~~l~~ 102 (771)
T TIGR01069 25 PLGKEDAIG-LKPPKSVEESKEIIIKLTALGSIEN-NVRFFGFEDIRELLKRAELGGIVKGLEYILVIQNALKTVKHLKV 102 (771)
T ss_pred HHHHHHHhc-CCCCCCHHHHHHHHHHHHHHHHhhc-cCCcCCCccHHHHHHHHhcCCcCChHHHHHHHHHHHHHHHHHHH
Confidence 344444333 5788888888877776443332221 11 112255556666555554222 1233344444444
Q ss_pred HHHhhhcCchhHHHHHHHHHHhhHHhHHHHHHHhhHHhHHHHHhhHHHHHHHHhHHhhhcchHHhHHhhHHh
Q 006565 85 SLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKT 156 (640)
Q Consensus 85 ~l~~~c~s~~~k~~~~~k~le~~~k~~~~~~k~~e~~i~d~kk~~~~~~~~~~~l~~k~~s~ee~~~~l~k~ 156 (640)
-|.- . + .+..|...+..+. .-..+.+.....|++--.+.|.++.++..++.+.+.++.++......
T Consensus 103 ~l~~-~-~---~~~~L~~~~~~l~-~~~~l~~~i~~~id~~g~i~d~aS~~L~~ir~~~~~~~~~i~~~l~~ 168 (771)
T TIGR01069 103 LSEH-V-L---DLEILFHLRLNLI-TLPPLENDIIACIDDDGKVKDGASEELDAIRESLKALEEEVVKRLHK 168 (771)
T ss_pred HHhc-c-c---cchHHHHHHhcCC-CcHHHHHHHHHHhCCCCEECCCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3321 1 1 1222222222221 12234455555555555667888888888888888887777655444
No 348
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=49.28 E-value=4.2e+02 Score=29.58 Aligned_cols=207 Identities=13% Similarity=0.103 Sum_probs=0.0
Q ss_pred HHhhHHhHHHHHhhHHHHHHHHhHHhhhcchHHhHHhhHHhHHhhhhhhHHHHHHHHHHHhHhhHhhHHHhhhHHHHhhh
Q 006565 116 KRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSR 195 (640)
Q Consensus 116 k~~e~~i~d~kk~~~~~~~~~~~l~~k~~s~ee~~~~l~k~le~~~~e~~ew~~kYe~~~~~~k~~~~~~AAGIsklK~R 195 (640)
+||+.|+.-+++....-..--.......--.|-|+--|.+.||+-+.-..-|-.--+++.--.-+.-+++--.|---++.
T Consensus 82 ~ct~spl~iL~~mM~qcKnmQe~~~s~LaAaE~khrKli~dLE~dRe~haqdaaeGDDlt~~LEKEReqL~QQiEFe~~e 161 (561)
T KOG1103|consen 82 QCTESPLDILDKMMAQCKNMQENAASLLAAAEKKHRKLIKDLEADREAHAQDAAEGDDLTAHLEKEREQLQQQIEFEIEE 161 (561)
T ss_pred eeccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhHHHHHHHHHHHHHH
Q 006565 196 STAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKA 275 (640)
Q Consensus 196 kkeae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a~L~er~~~~~q~r~~a~ree~~s~le~kE~kie~~k 275 (640)
++.++---+-...+|. |-++.++++.. -|--.+ +.+..+ -.+.--..+++--+++.-+
T Consensus 162 ~kK~E~~k~Kl~~qLe-------eEk~RHeqis~----------mLilEc-Kka~~K----aaEegqKA~ei~Lklekdk 219 (561)
T KOG1103|consen 162 KKKAEIAKDKLEMQLE-------EEKKRHEQISL----------MLILEC-KKALLK----AAEEGQKAEEIMLKLEKDK 219 (561)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHH----------HHHHHH-HHHHHH----HHHhhhhHHHHHHhhccCc
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 276 TKIEHAEQCLTTLRLEL----KAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYL 344 (640)
Q Consensus 276 ~ei~~aEq~la~~q~eL----~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L 344 (640)
......+..++.-+++- ...+.-|..+.-+...++-++..++.+-+-++.+.+++.+-...++....|+
T Consensus 220 sr~~k~eee~aaERerglqteaqvek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh~ 292 (561)
T KOG1103|consen 220 SRTKKGEEEAAAERERGLQTEAQVEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQHL 292 (561)
T ss_pred cccCCChHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
No 349
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=49.20 E-value=90 Score=26.30 Aligned_cols=45 Identities=11% Similarity=0.230 Sum_probs=19.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 305 EISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYK 349 (640)
Q Consensus 305 ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~ 349 (640)
.|..++.++.++..-.+.++..+.....++..|...+..|..++.
T Consensus 5 Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~ 49 (69)
T PF04102_consen 5 RIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLR 49 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444443333
No 350
>PRK04406 hypothetical protein; Provisional
Probab=49.06 E-value=1.3e+02 Score=26.04 Aligned_cols=43 Identities=9% Similarity=0.156 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 006565 465 ASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQ 507 (640)
Q Consensus 465 ~~~l~~le~~le~~re~l~e~nrrleal~~e~~~lqs~id~Le 507 (640)
...+--.+.-|+++-..+....+.++.+..++..+...+..++
T Consensus 17 E~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 17 ECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4444445555555555555556666666666555555555443
No 351
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=49.05 E-value=5.7 Score=45.54 Aligned_cols=119 Identities=14% Similarity=0.240 Sum_probs=0.0
Q ss_pred hHHHhHHHHHHhhhcCchhHHHHHHHHHHhhHHhHHHHHHHhhHHhHHHHHhhHHHHHHHHhHHhhhcchHHhHHhhHHh
Q 006565 77 DQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKT 156 (640)
Q Consensus 77 ~~i~~~~~~l~~~c~s~~~k~~~~~k~le~~~k~~~~~~k~~e~~i~d~kk~~~~~~~~~~~l~~k~~s~ee~~~~l~k~ 156 (640)
.+|...+.+|++.++..+.==..|.-|=+-..|+-.+|+.|+++.=..++++..+-.+++.+...+.-++||.+--=+..
T Consensus 376 qEI~~LkErL~~S~rkLeEyErrLl~QEqqt~Kll~qyq~RLedSE~RLr~QQ~eKd~qmksII~RL~~vEeELrre~~~ 455 (495)
T PF12004_consen 376 QEIQSLKERLRMSHRKLEEYERRLLSQEQQTQKLLLQYQARLEDSEERLRRQQEEKDSQMKSIISRLMAVEEELRREHAE 455 (495)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHhhhhHHHHHHHHhhhhhhhhhhhhhHHH
Confidence 58888888888888866655555555555555999999999999999999999999999999999999999988776666
Q ss_pred HHhhhhhhHHHHHHHHHHHhHhhHhhHHHhhhHHHHhhh
Q 006565 157 VDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSR 195 (640)
Q Consensus 157 le~~~~e~~ew~~kYe~~~~~~k~~~~~~AAGIsklK~R 195 (640)
+.++=.++.-|..--+.-|--..+...++.+.++.+|.|
T Consensus 456 m~~~~~~kqrii~aQ~~~i~~Ldaan~Rl~sal~~lk~r 494 (495)
T PF12004_consen 456 MQAVLDHKQRIIDAQEKRIAALDAANSRLMSALTQLKER 494 (495)
T ss_dssp ---------------------------------------
T ss_pred HhcccccchHHHHHhhhhccccccccccccccccccccC
Confidence 666666666677666777777777788888888887776
No 352
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=48.45 E-value=67 Score=37.67 Aligned_cols=74 Identities=22% Similarity=0.205 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHhhhhhcccccccchhhhhhccccccccccccccccccccCcchHHhhhhccCC-----ccCCCCCccC
Q 006565 498 SAQAKLDEMQQELTKARLNETALGSKLRAVSHGKRARADDYEAGVGSVQEMDTNDKVLRANKRSR-----STTSPLKYTQ 572 (640)
Q Consensus 498 ~lqs~id~Leg~~~~~~~~et~l~~~~k~~~~~kr~r~~~~~~~~~sv~d~~~~~~~~r~~kr~~-----~t~~~~~~~~ 572 (640)
+-+|+||++--.+ .-|+++ |+--.|.-|--|.=| +|--|..-+.+=+.|.+.+==|+ .|.+|.|.|-
T Consensus 280 lKkSLIDMYSEVL--D~Ls~Y--D~sYnt~DhLPRVVV----VGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTL 351 (980)
T KOG0447|consen 280 LKKSLIDMYSEVL--DVLSDY--DASYNTQDHLPRVVV----VGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTL 351 (980)
T ss_pred HHHHHHHHHHHHH--HHHhcc--cccccccccCceEEE----EcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEe
Confidence 4567888876655 456665 777777766666433 23333333333344444333333 4899999999
Q ss_pred CCCCCcc
Q 006565 573 PEDGGSV 579 (640)
Q Consensus 573 ~e~~~~~ 579 (640)
+|+---|
T Consensus 352 sEGPyHV 358 (980)
T KOG0447|consen 352 SEGPHHV 358 (980)
T ss_pred ccCcchh
Confidence 9954443
No 353
>COG5283 Phage-related tail protein [Function unknown]
Probab=48.35 E-value=7.2e+02 Score=32.02 Aligned_cols=97 Identities=8% Similarity=0.036 Sum_probs=66.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 306 ISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAA 385 (640)
Q Consensus 306 i~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~areead~ 385 (640)
.+....-+..-..+++.+...++...+=...++++..++........+.|.+...++--++.-+..+...++.+...+..
T Consensus 45 ~k~t~~~ls~s~~k~~~l~eameK~k~~~~~~kqe~~evn~at~a~~kay~e~~~q~tqae~~~~sas~q~~~a~~q~~~ 124 (1213)
T COG5283 45 QKLTKDGLSASKGKYEGLSEAMEKQKKAYEDLKQEVKEVNRATQASKKAYQEYNAQYTQAENKLRSLSGQFGVASEQLML 124 (1213)
T ss_pred HHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHH
Confidence 33333344445567777777777777777777888777777777777777777777777777777777777777776666
Q ss_pred HHhhHHHHHHHHHHHHH
Q 006565 386 ARKGKSEFENLAMERMA 402 (640)
Q Consensus 386 aq~E~~elQr~~~qrla 402 (640)
.|+++..++-.+....+
T Consensus 125 ~~~~iq~~~~~is~t~k 141 (1213)
T COG5283 125 QQKEIQRLQYAISTLNK 141 (1213)
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 66666655555544443
No 354
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=48.22 E-value=2e+02 Score=33.04 Aligned_cols=28 Identities=25% Similarity=0.266 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHhhHHHHHhhHHHHHHHH
Q 006565 289 RLELKAAESKMRSYEVEISSQKLETKEL 316 (640)
Q Consensus 289 q~eL~e~e~kIk~~e~ei~~le~el~~L 316 (640)
+.++..++.++.....++..++.++.+|
T Consensus 77 ~~~l~~l~~~~~~~~~~~~~~~~~~~~l 104 (525)
T TIGR02231 77 RKQIRELEAELRDLEDRGDALKALAKFL 104 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444444444
No 355
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=48.21 E-value=3.9e+02 Score=28.92 Aligned_cols=224 Identities=17% Similarity=0.192 Sum_probs=116.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHH-----------------
Q 006565 261 SSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAV----------------- 323 (640)
Q Consensus 261 ~s~le~kE~kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~----------------- 323 (640)
-.++..+-.+..-+..+....-..+-.+..+|..++.+-+++-.....++.++..|...++-+
T Consensus 8 ga~iae~k~e~sAlhqK~~aKtdairiL~QdLEkfe~Ekd~~a~~aETLeln~ealere~eLlaa~gc~a~~e~gterqd 87 (389)
T KOG4687|consen 8 GAEIAELKKEFSALHQKCGAKTDAIRILGQDLEKFENEKDGLAARAETLELNLEALERELELLAACGCDAKIEFGTERQD 87 (389)
T ss_pred cHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHhcCCCchhhccchhhH
Confidence 344555555666666666666666667777777777777777777777777777666655432
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHH-HHH
Q 006565 324 -NAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARK-GKSEFENLA-MER 400 (640)
Q Consensus 324 -~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~areead~aq~-E~~elQr~~-~qr 400 (640)
-.-|+.+..+-..|..+...|.++... +...|+-+-+.......+..-.-.+ .+++. +-..+.+.. .-+
T Consensus 88 Laa~i~etkeeNlkLrTd~eaL~dq~ad-------LhgD~elfReTeAq~ese~~a~ase-Naarneeelqwrrdeanfi 159 (389)
T KOG4687|consen 88 LAADIEETKEENLKLRTDREALLDQKAD-------LHGDCELFRETEAQFESEKMAGASE-NAARNEEELQWRRDEANFI 159 (389)
T ss_pred HHHHHHHHHHHhHhhhHHHHHHHHHHHH-------HhchHHHHHHHHHHHHHHHhccccc-ccccchHHHHhhHHHHHHH
Confidence 223333333333333343333333333 3333332222211111111110000 01111 112222222 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHH-HHHHHHHHHH---------HHHHHHHHHHhhHHHHHHHHHH
Q 006565 401 MAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSK-VALLEARVEE---------REKEIESLLESNNEQRASTVKK 470 (640)
Q Consensus 401 laeIerl~~qIE~lEre~e~Le~E~~~l~~sEl~al~k-v~~lE~~vee---------~e~eiE~L~~~~~eq~~~~l~~ 470 (640)
.+ .+-+......+.-.+...-+++..|= .|-+++.. +.-|...+-- +-.+|+++ -.++.=+...+..
T Consensus 160 c~-~EgLkak~a~LafDLkamideKEELi-mERDa~kcKa~RLnhELfvaLnadkrhpr~~DiDgl-l~ENkfLhaklki 236 (389)
T KOG4687|consen 160 CA-HEGLKAKCAGLAFDLKAMIDEKEELI-MERDAMKCKAARLNHELFVALNADKRHPRAEDIDGL-LAENKFLHAKLKI 236 (389)
T ss_pred HH-HHHHHHHhhhhhhHHHHHhchHHHHH-HHHHHHHHHHHHhhhHHHHHHcCCCCCchhhhhHHH-HHhhHHHHHHhcc
Confidence 22 44444444444444444444455554 55444444 3333322211 33567777 7777888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHH
Q 006565 471 LEDLLESERRSRAAANAMAERLSLE 495 (640)
Q Consensus 471 le~~le~~re~l~e~nrrleal~~e 495 (640)
-+.+++.+...++--..+++++..+
T Consensus 237 adeElEliK~siaKYKqM~dAknvq 261 (389)
T KOG4687|consen 237 ADEELELIKMSIAKYKQMADAKNVQ 261 (389)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 8888888888888888888887654
No 356
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=47.72 E-value=58 Score=36.09 Aligned_cols=41 Identities=27% Similarity=0.401 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 442 LEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRA 483 (640)
Q Consensus 442 lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~l~ 483 (640)
+..+|++.+..+..+ ...++.+...++.++..+..+...+.
T Consensus 142 l~~Ri~e~Eeris~l-Ed~~~~i~~~~~~~~k~i~~l~~kl~ 182 (370)
T PF02994_consen 142 LNSRIDELEERISEL-EDRIEEIEQAIKELEKRIKKLEDKLD 182 (370)
T ss_dssp --HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHH-HHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 444555555555555 44444444545444444443333333
No 357
>PRK02119 hypothetical protein; Provisional
Probab=47.65 E-value=1.3e+02 Score=25.80 Aligned_cols=36 Identities=8% Similarity=-0.069 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 309 QKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYL 344 (640)
Q Consensus 309 le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L 344 (640)
++.+|..|+.++.....-++.+..-+-.-...|..|
T Consensus 7 ~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L 42 (73)
T PRK02119 7 LENRIAELEMKIAFQENLLEELNQALIEQQFVIDKM 42 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333
No 358
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=47.55 E-value=3.1e+02 Score=27.58 Aligned_cols=15 Identities=13% Similarity=0.098 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHhhh
Q 006565 498 SAQAKLDEMQQELTK 512 (640)
Q Consensus 498 ~lqs~id~Leg~~~~ 512 (640)
.--.-|..|.+|..+
T Consensus 153 rwTDNI~~l~~~~~~ 167 (188)
T PF03962_consen 153 RWTDNIFSLKSYLKK 167 (188)
T ss_pred HHHhhHHHHHHHHHH
Confidence 333344445555533
No 359
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=47.09 E-value=3e+02 Score=27.35 Aligned_cols=18 Identities=22% Similarity=0.257 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 006565 219 EWKRKYGVAVREAKAALE 236 (640)
Q Consensus 219 Ewkrky~~L~~QAKkAee 236 (640)
-|+++|......||+-..
T Consensus 54 ~VRkqY~~~i~~AKkqRk 71 (161)
T TIGR02894 54 YVRKQYEEAIELAKKQRK 71 (161)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 467788888887777664
No 360
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.99 E-value=2.3e+02 Score=31.33 Aligned_cols=38 Identities=29% Similarity=0.397 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHH
Q 006565 400 RMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSK 438 (640)
Q Consensus 400 rlaeIerl~~qIE~lEre~e~Le~E~~~l~~sEl~al~k 438 (640)
+..+|+++...++.+.|.-+.|...+..|+ .++++++.
T Consensus 223 ~eeeme~~~aeq~slkRt~EeL~~G~~kL~-~~~etLEq 260 (365)
T KOG2391|consen 223 REEEMERLQAEQESLKRTEEELNIGKQKLV-AMKETLEQ 260 (365)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhHHHHH-HHHHHHHH
Confidence 344455555555555555555544444444 33333333
No 361
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=46.93 E-value=3.3e+02 Score=27.66 Aligned_cols=123 Identities=20% Similarity=0.223 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 264 LAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVY 343 (640)
Q Consensus 264 le~kE~kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~ 343 (640)
+.=|..-++.+..++.+++.-+......|...+.-+..-..-......++..|..-+..+..-+.+.+.-.....+++.+
T Consensus 62 L~GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~e 141 (188)
T PF05335_consen 62 LAGKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQELAE 141 (188)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666667777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 344 LEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAA 386 (640)
Q Consensus 344 L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~areead~a 386 (640)
=++-++....|.+.+...+..+...+...+.-+.++-..+..+
T Consensus 142 K~qLLeaAk~Rve~L~~QL~~Ar~D~~~tk~aA~kA~~AA~eA 184 (188)
T PF05335_consen 142 KTQLLEAAKRRVEELQRQLQAARADYEKTKKAAYKAACAAQEA 184 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666666666666655555554444433
No 362
>PRK02793 phi X174 lysis protein; Provisional
Probab=46.26 E-value=1.5e+02 Score=25.41 Aligned_cols=46 Identities=15% Similarity=0.155 Sum_probs=21.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 303 EVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKY 348 (640)
Q Consensus 303 e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl 348 (640)
+..|..|+.++.+.+.-.+.++.-+.....++..|...+..|..++
T Consensus 7 e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl 52 (72)
T PRK02793 7 EARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKL 52 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444555555554444444443
No 363
>PRK10698 phage shock protein PspA; Provisional
Probab=45.81 E-value=3.6e+02 Score=27.80 Aligned_cols=84 Identities=21% Similarity=0.285 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 006565 204 AAAREQALSAQEEVEEWKRKYGVAVRE-----AKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKI 278 (640)
Q Consensus 204 ~at~enL~RVkDel~Ewkrky~~L~~Q-----AKkAeek~a~L~er~~~~~q~r~~a~ree~~s~le~kE~kie~~k~ei 278 (640)
..+..++......+.+|..+-..+... |+.|..+.......+. .++.. ..+....++.+...+..++.++
T Consensus 55 k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~-~l~~~----~~~~~~~~~~L~~~l~~L~~ki 129 (222)
T PRK10698 55 KQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIA-TLEHE----VTLVDETLARMKKEIGELENKL 129 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH-HHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566778888888887777653 3343333333444443 44444 4444444455555555555555
Q ss_pred HHHHHHHHHHHHHH
Q 006565 279 EHAEQCLTTLRLEL 292 (640)
Q Consensus 279 ~~aEq~la~~q~eL 292 (640)
..+..+-..+-.+.
T Consensus 130 ~eak~k~~~L~aR~ 143 (222)
T PRK10698 130 SETRARQQALMLRH 143 (222)
T ss_pred HHHHHHHHHHHHHH
Confidence 55544444443333
No 364
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=45.79 E-value=1.3e+02 Score=35.53 Aligned_cols=26 Identities=12% Similarity=-0.054 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 334 ARIMEQDKVYLEQKYKSEFERFEEVQ 359 (640)
Q Consensus 334 l~~L~~ei~~L~ekl~se~er~ee~~ 359 (640)
+..+..++..++..++....+++++.
T Consensus 600 ~~~~~~~~~~~~~~l~~~~~~w~~l~ 625 (638)
T PRK10636 600 LTACLQQQASAKSGLEECEMAWLEAQ 625 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 365
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.35 E-value=5.9e+02 Score=30.19 Aligned_cols=107 Identities=11% Similarity=0.149 Sum_probs=76.5
Q ss_pred HHHHhHHhhhcchHHhHHhhHHhHHhhhhhhHHHHHH-----------HHHHHhHhhHhhHHHhhhHHHHhhhhHHHHHH
Q 006565 134 SRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRK-----------YDQVLTKQKAMEDQVCSEIEVLKSRSTAAEAR 202 (640)
Q Consensus 134 ~~~~~l~~k~~s~ee~~~~l~k~le~~~~e~~ew~~k-----------Ye~~~~~~k~~~~~~AAGIsklK~Rkkeae~R 202 (640)
.++.+|+.+|--||--+.++...||-.+.--..|+.- -|..|++--+-+.-|.-.|..+..--+....-
T Consensus 43 eeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~EesLLqESaakE~~yl~kI~eleneLKq~r~e 122 (772)
T KOG0999|consen 43 EEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARDGEEREESLLQESAAKEEYYLQKILELENELKQLRQE 122 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3567778888888888888888888777666666543 34455655566667777888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 203 LAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAI 240 (640)
Q Consensus 203 L~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a~ 240 (640)
|..+++..+|+..+..+.+..-..++-|-.+-.+.+..
T Consensus 123 l~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe 160 (772)
T KOG0999|consen 123 LTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKE 160 (772)
T ss_pred HHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHH
Confidence 88888888888888887777666666666555544433
No 366
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=45.18 E-value=2.2e+02 Score=25.15 Aligned_cols=77 Identities=14% Similarity=0.173 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhHHHhhhHHHHHHHHhHHHHHHHHHHHHHH
Q 006565 198 AAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAI-VQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKA 275 (640)
Q Consensus 198 eae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a~-L~er~~~~~q~r~~a~ree~~s~le~kE~kie~~k 275 (640)
.....+..+......+.+-+..+......+..++..+...... ....+ ..+..+.+.+..++...-..+...+....
T Consensus 4 ~L~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~-~~L~~~e~~ll~~l~~~~~~~~~~l~~q~ 81 (127)
T smart00502 4 ALEELLTKLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELR-NALNKRKKQLLEDLEEQKENKLKVLEQQL 81 (127)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555556666666666666666666666666655544 33333 25555655555555554444443333333
No 367
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=45.06 E-value=1.1e+02 Score=25.88 Aligned_cols=43 Identities=16% Similarity=0.222 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 006565 465 ASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQ 507 (640)
Q Consensus 465 ~~~l~~le~~le~~re~l~e~nrrleal~~e~~~lqs~id~Le 507 (640)
+..+.-.+.-|+.+-..+....+.++.+..++..+..+|..+.
T Consensus 10 E~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 10 EIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444444444444445555555555555555555555555544
No 368
>PRK04325 hypothetical protein; Provisional
Probab=44.99 E-value=1.5e+02 Score=25.44 Aligned_cols=46 Identities=11% Similarity=0.187 Sum_probs=22.8
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 304 VEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYK 349 (640)
Q Consensus 304 ~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~ 349 (640)
..|..|+.++.+.+.-.+.++..+....+++..|...+..|..++.
T Consensus 9 ~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~ 54 (74)
T PRK04325 9 DRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMR 54 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555555555555555555555555544443
No 369
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=44.94 E-value=6.7e+02 Score=30.74 Aligned_cols=139 Identities=6% Similarity=0.133 Sum_probs=70.5
Q ss_pred HHHHHHHHHhcCCCCcchhhHHHHHHHHHHhhhhc-ccCCchH---HHHHHHHHHhhhchH---HHH--HHHHHhHHHhH
Q 006565 12 QSMERKLRAACHSSDASIDNVVKVLDGLISEYETS-CHGPGKW---QKLATFLQQSSEGPI---LDL--VKRLIDQIGSE 82 (640)
Q Consensus 12 ~~me~~l~~ac~~~~a~~~~~~~~l~~~l~~y~~s-~~G~g~~---~k~~~~L~~~l~~~~---~d~--~~~~~~~i~~~ 82 (640)
-.|.+++-.. ..|-.+++.|.+-|+..-..+... ..|+..| .-+..+|...-.|.+ .|+ ..+.+..+...
T Consensus 24 t~~Gk~~l~~-l~P~~~~~~i~~~l~~~~e~~~~~~~~~~~~l~~~~Di~~~l~r~~~g~~l~~~eL~~i~~~l~~~~~l 102 (782)
T PRK00409 24 SELGKEKVLQ-LDPETDFEEVEELLEETDEAAKLLRLKGLPPFEGVKDIDDALKRAEKGGVLSGDELLEIAKTLRYFRQL 102 (782)
T ss_pred CHHHHHHHHc-CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 3566666555 468888888888777643222211 1222222 266666766655542 222 23444555555
Q ss_pred HHHHHhhh-c-CchhHHHHHHHHHHhhHHhHHHHHHHhhHHhHHHHHhhHHHHHHHHhHHhhhcchHHhHHhhHHh
Q 006565 83 RSSLMLKY-R-SIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKT 156 (640)
Q Consensus 83 ~~~l~~~c-~-s~~~k~~~~~k~le~~~k~~~~~~k~~e~~i~d~kk~~~~~~~~~~~l~~k~~s~ee~~~~l~k~ 156 (640)
++-|.- . . ..-.-+..+...+.... .+.+.....|++--.+.|.++.++..++...+.++.++......
T Consensus 103 ~~~l~~-~~~~~~~~~L~~~~~~l~~~~----~l~~~i~~~id~~g~i~d~aS~eL~~iR~~~~~~~~~i~~~l~~ 173 (782)
T PRK00409 103 KRFIED-LEEEEELPILEEWVAKIRTLP----ELEQEIHNCIDEEGEVKDSASEKLRGIRRQLRRKKSRIREKLES 173 (782)
T ss_pred HHHHHh-cccccchhHHHHHHHcCcCcH----HHHHHHHHHhCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554432 1 0 00112222222222222 23344444444444566777777777777777777666544433
No 370
>PRK00736 hypothetical protein; Provisional
Probab=44.84 E-value=1.4e+02 Score=25.25 Aligned_cols=45 Identities=9% Similarity=0.189 Sum_probs=22.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 304 VEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKY 348 (640)
Q Consensus 304 ~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl 348 (640)
..|..|+.++.+...-.+.++..+....+++..|...+..|.+++
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl 49 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERF 49 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555555555555555555554444
No 371
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=43.98 E-value=5.4e+02 Score=29.36 Aligned_cols=54 Identities=15% Similarity=0.246 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 006565 402 AVIERVQRQIESLERQKTDLTNEVNRIRESELEALSK-VALLEARVEEREKEIESL 456 (640)
Q Consensus 402 aeIerl~~qIE~lEre~e~Le~E~~~l~~sEl~al~k-v~~lE~~vee~e~eiE~L 456 (640)
+.+..+...+..-+++...+-.+..-++ .|-.++.. +...|..+.+++++...+
T Consensus 13 qr~~~~~~~laq~~k~~s~~~aq~~~~~-a~~~ai~a~~~~~E~~l~~Lq~e~~~l 67 (459)
T KOG0288|consen 13 QRLIDLNTELAQCEKAQSRLSAQLVILR-AESRAIKAKLQEKELELNRLQEENTQL 67 (459)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333343344444444444444444444 44444444 555555444444444444
No 372
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=43.95 E-value=3.7e+02 Score=27.47 Aligned_cols=70 Identities=20% Similarity=0.240 Sum_probs=30.4
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 006565 431 SELEALSK-VALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQA 501 (640)
Q Consensus 431 sEl~al~k-v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~l~e~nrrleal~~e~~~lqs 501 (640)
.++..+++ +..-+.+...++.++.-. .....+....-+....+...+..+...++..|++++.++..|+.
T Consensus 112 AQka~~eR~ia~~~~ra~~LqaDl~~~-~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~ 182 (192)
T PF11180_consen 112 AQKAQLERLIAESEARANRLQADLQIA-RQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQR 182 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444 555555555555555533 33333333333333444444444444444444444433333333
No 373
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=43.93 E-value=89 Score=26.82 Aligned_cols=45 Identities=11% Similarity=0.225 Sum_probs=38.5
Q ss_pred HHHhhHHhHHHHHhhHHHHHHHHhHHhhhcchHHhHHhhHHhHHh
Q 006565 115 LKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDS 159 (640)
Q Consensus 115 ~k~~e~~i~d~kk~~~~~~~~~~~l~~k~~s~ee~~~~l~k~le~ 159 (640)
++-++++.++++.-......+-+.|..++..|-.++..|..+|+-
T Consensus 23 ~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~r 67 (70)
T PF04899_consen 23 QQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLER 67 (70)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344778888998888899999999999999999999999988874
No 374
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=43.84 E-value=4.5e+02 Score=28.39 Aligned_cols=17 Identities=41% Similarity=0.646 Sum_probs=11.7
Q ss_pred chHHhhhhccCCccCCC
Q 006565 551 NDKVLRANKRSRSTTSP 567 (640)
Q Consensus 551 ~~~~~r~~kr~~~t~~~ 567 (640)
++.-.++++|+-..|+.
T Consensus 251 s~~~~~~n~~pgtA~~~ 267 (338)
T KOG3647|consen 251 SDKLMQQNKRPGTATSA 267 (338)
T ss_pred HHHHHHcCCCCCccccc
Confidence 45667888887765553
No 375
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=43.61 E-value=3.1e+02 Score=26.38 Aligned_cols=36 Identities=25% Similarity=0.533 Sum_probs=28.8
Q ss_pred hhHHHHHHHHHHHhHhhHhhHHHhhhHHHHhhhhHHHHHH
Q 006565 163 EISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEAR 202 (640)
Q Consensus 163 e~~ew~~kYe~~~~~~k~~~~~~AAGIsklK~Rkkeae~R 202 (640)
|-.||+.|||- +..+.+++-..|..++.+...+.+.
T Consensus 2 e~nEWktRYEt----Q~E~N~QLekqi~~l~~kiek~r~n 37 (129)
T PF15372_consen 2 EGNEWKTRYET----QLELNDQLEKQIIILREKIEKIRGN 37 (129)
T ss_pred cchhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 45799999998 6678888899999888777666553
No 376
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=42.86 E-value=97 Score=25.52 Aligned_cols=33 Identities=27% Similarity=0.452 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 006565 440 ALLEARVEEREKEIESLLESNNEQRASTVKKLED 473 (640)
Q Consensus 440 ~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~ 473 (640)
.++|+.+......++.+ +..+++++.+|+.+++
T Consensus 3 ~elEn~~~~~~~~i~tv-k~en~~i~~~ve~i~e 35 (55)
T PF05377_consen 3 DELENELPRIESSINTV-KKENEEISESVEKIEE 35 (55)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 34444444444444444 4444444444444444
No 377
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=42.61 E-value=34 Score=24.84 Aligned_cols=34 Identities=26% Similarity=0.402 Sum_probs=26.6
Q ss_pred hhHhhHHHHHHHHHhcCchhhhhhccCCChHHHHHHHHHh
Q 006565 596 YTKFTVQKLKQELTKHNFGAELLQLRNPNKKEILALYEKC 635 (640)
Q Consensus 596 y~k~t~~kl~~el~~~~~g~~l~~l~~~~k~~i~aly~~~ 635 (640)
|.++||+.||.+|..+|... +.+|.|++.-...+
T Consensus 1 ~~~l~~~~Lk~~l~~~gl~~------~G~K~~Lv~Rl~~~ 34 (35)
T smart00513 1 LAKLKVSELKDELKKRGLST------SGTKAELVDRLLEA 34 (35)
T ss_pred CCcCcHHHHHHHHHHcCCCC------CCCHHHHHHHHHHh
Confidence 56899999999999998542 66788888765544
No 378
>PF15456 Uds1: Up-regulated During Septation
Probab=42.53 E-value=3e+02 Score=26.04 Aligned_cols=39 Identities=28% Similarity=0.337 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhH
Q 006565 270 EMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQ 309 (640)
Q Consensus 270 kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~l 309 (640)
+.+.++.++.....++..++..+. .+.++++.-..+..+
T Consensus 23 EVe~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~sl~~l 61 (124)
T PF15456_consen 23 EVEELKKELRSLDSRLEYLRRKLA-LESKIRDAAHSLSRL 61 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 555666666666666666666665 565665555444444
No 379
>COG5283 Phage-related tail protein [Function unknown]
Probab=42.47 E-value=8.7e+02 Score=31.32 Aligned_cols=15 Identities=7% Similarity=0.089 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHH
Q 006565 226 VAVREAKAALEKAAI 240 (640)
Q Consensus 226 ~L~~QAKkAeek~a~ 240 (640)
.++.|+|.+.+-...
T Consensus 40 ~~e~q~k~t~~~ls~ 54 (1213)
T COG5283 40 MLEKQQKLTKDGLSA 54 (1213)
T ss_pred HHHHHHHhhhhhhhh
Confidence 455556655544443
No 380
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=42.19 E-value=70 Score=35.44 Aligned_cols=26 Identities=27% Similarity=0.229 Sum_probs=12.3
Q ss_pred hHHHHHHHHHhcCchhhhhhccCCCh
Q 006565 600 TVQKLKQELTKHNFGAELLQLRNPNK 625 (640)
Q Consensus 600 t~~kl~~el~~~~~g~~l~~l~~~~k 625 (640)
++++++.-|+...+=-++|.=+.|+|
T Consensus 334 ~~~~~~~fl~~~p~l~~~~~~~~~~~ 359 (370)
T PF02994_consen 334 DPEEAKEFLKKRPALQEILKGKAQNK 359 (370)
T ss_dssp SHHHHHHHHCT-HHHHHHHTTTSSS-
T ss_pred CHHHHHHHHHcCchHHHHHhhHhhhh
Confidence 34444444555555555555444444
No 381
>PRK00295 hypothetical protein; Provisional
Probab=42.06 E-value=1.8e+02 Score=24.61 Aligned_cols=43 Identities=9% Similarity=0.090 Sum_probs=19.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 306 ISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKY 348 (640)
Q Consensus 306 i~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl 348 (640)
|..++.++.+.+.-.+.++..+....+++..|...+..|..++
T Consensus 7 i~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl 49 (68)
T PRK00295 7 VTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQ 49 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444444443333
No 382
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.73 E-value=6.6e+02 Score=29.72 Aligned_cols=86 Identities=20% Similarity=0.241 Sum_probs=39.5
Q ss_pred HHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 294 AAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKAT 373 (640)
Q Consensus 294 e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~kea~ 373 (640)
+...+|..+..+.+.+.+.+..|.-.+....+-+--|......|.--+..+..++.+..--++...+.|-..+..++.|.
T Consensus 328 E~~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh 407 (654)
T KOG4809|consen 328 ERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAH 407 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555555555555555555444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHH
Q 006565 374 ELADRE 379 (640)
Q Consensus 374 e~~~~a 379 (640)
+..+.+
T Consensus 408 ~~~dda 413 (654)
T KOG4809|consen 408 NIEDDA 413 (654)
T ss_pred HhhHhh
Confidence 443333
No 383
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=41.70 E-value=2.6e+02 Score=25.01 Aligned_cols=65 Identities=17% Similarity=0.216 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 313 TKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELAD 377 (640)
Q Consensus 313 l~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~kea~e~~~ 377 (640)
|-.++...+.+...+.....++..+++.+..|......+.++|-.+....+....+.+...-...
T Consensus 5 L~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~ 69 (96)
T PF08647_consen 5 LVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLS 69 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444444444444444444444444444333333333333
No 384
>PF06721 DUF1204: Protein of unknown function (DUF1204); InterPro: IPR009596 This family represents the C terminus of a number of Arabidopsis thaliana hypothetical proteins of unknown function. Family members contain a conserved DFD motif.
Probab=41.63 E-value=4e+02 Score=27.24 Aligned_cols=54 Identities=17% Similarity=0.201 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 313 TKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAE 366 (640)
Q Consensus 313 l~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaE 366 (640)
+..|-.++.++.-.+.++......|..+..-+-+.+..-.-...+...++.+++
T Consensus 3 ~~~l~~~~~s~s~~a~~~k~~~~~la~~~~~~~~~~~r~~~d~~~~~~K~deLe 56 (228)
T PF06721_consen 3 NDELYKKVESASKEAAHAKSEHATLAYQRTVMGQERDRCQDDAEKMNVKFDELE 56 (228)
T ss_pred hHHHHHHHHHHhHHhhhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 456666777777777777777777777776665544433333333333333333
No 385
>PF15456 Uds1: Up-regulated During Septation
Probab=41.59 E-value=3.1e+02 Score=25.94 Aligned_cols=80 Identities=23% Similarity=0.220 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHH--------------HHHHhHHHHHHHHHHHHHHHHHHH
Q 006565 215 EEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVL--------------REEFSSTLAEKEEEMKEKATKIEH 280 (640)
Q Consensus 215 Del~Ewkrky~~L~~QAKkAeek~a~L~er~~~~~q~r~~a~--------------ree~~s~le~kE~kie~~k~ei~~ 280 (640)
++..++++.+..|.........+++ ++..+- .+-..+..+ ..+...+++..+.++++...++..
T Consensus 22 eEVe~LKkEl~~L~~R~~~lr~kl~-le~k~R-dAa~sl~~l~~~~~~~~~~~~~~~~~~eeel~~~~rk~ee~~~eL~~ 99 (124)
T PF15456_consen 22 EEVEELKKELRSLDSRLEYLRRKLA-LESKIR-DAAHSLSRLYSSSSRRARFSRESSLKAEEELAESDRKCEELAQELWK 99 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-HHHHHHHHhcCCCccccCCCcchHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4556666666666666666665555 444432 333332222 223333466666677777777777
Q ss_pred HHHHHHHHHHHHHHHH
Q 006565 281 AEQCLTTLRLELKAAE 296 (640)
Q Consensus 281 aEq~la~~q~eL~e~e 296 (640)
++.+++..+..|-+..
T Consensus 100 le~R~~~~~~rLLeH~ 115 (124)
T PF15456_consen 100 LENRLAEVRQRLLEHT 115 (124)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777766665544
No 386
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=41.59 E-value=2.4e+02 Score=24.51 Aligned_cols=67 Identities=15% Similarity=0.313 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHhhHHHHHHHHHH
Q 006565 439 VALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERR---------------SRAAANAMAERLSLEVQSAQAKL 503 (640)
Q Consensus 439 v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re---------------~l~e~nrrleal~~e~~~lqs~i 503 (640)
+..+.--|+..+..+.++ ......+..+|..+...+....+ .+....+++..+..-++.++..+
T Consensus 9 ~~~l~P~l~~~~~~l~el-~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~y~~KL~~ikkrm~~l~~~l~~lk~R~ 87 (92)
T PF14712_consen 9 LSLLEPDLDRLDQQLQEL-RQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDPYVKKLVNIKKRMSNLHERLQKLKKRA 87 (92)
T ss_pred HHHHhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444 44444444444444444443333 33344444444444444555544
Q ss_pred HHH
Q 006565 504 DEM 506 (640)
Q Consensus 504 d~L 506 (640)
+.|
T Consensus 88 ~~L 90 (92)
T PF14712_consen 88 DKL 90 (92)
T ss_pred Hhh
Confidence 444
No 387
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=41.45 E-value=2.8e+02 Score=25.30 Aligned_cols=58 Identities=26% Similarity=0.351 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhH--HHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 275 ATKIEHAEQCLTTLRLELKAAESKMRSY--EVEISSQKLETKELSEKLEAVNAKAQSFER 332 (640)
Q Consensus 275 k~ei~~aEq~la~~q~eL~e~e~kIk~~--e~ei~~le~el~~L~ekle~~~~eies~e~ 332 (640)
+.++....+.+.....++...|.+++.+ ..++..++..|..+..+...+...+.....
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~ 93 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSH 93 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3444444444444444455555555544 444444444444444444444444444433
No 388
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=41.44 E-value=2.7e+02 Score=32.08 Aligned_cols=28 Identities=29% Similarity=0.344 Sum_probs=18.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHhh
Q 006565 484 AANAMAERLSLEVQSAQAKLDEMQQELT 511 (640)
Q Consensus 484 e~nrrleal~~e~~~lqs~id~Leg~~~ 511 (640)
+.....+.++.+.+.+++.|+.|++.+.
T Consensus 113 ~~~~~~~ql~~~~~~~~~~l~~l~~~l~ 140 (472)
T TIGR03752 113 ELTKEIEQLKSERQQLQGLIDQLQRRLA 140 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444566667777778888888776653
No 389
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=40.75 E-value=2.5e+02 Score=24.60 Aligned_cols=45 Identities=18% Similarity=0.355 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 320 LEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKV 364 (640)
Q Consensus 320 le~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rlee 364 (640)
++.+..+.++...++..++...+.++.++.+-.+.+.-+...+-+
T Consensus 6 Ld~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~e 50 (79)
T PF08581_consen 6 LDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYE 50 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444433433333333333
No 390
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=40.66 E-value=2e+02 Score=34.00 Aligned_cols=20 Identities=30% Similarity=0.400 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHhhHHH
Q 006565 285 LTTLRLELKAAESKMRSYEV 304 (640)
Q Consensus 285 la~~q~eL~e~e~kIk~~e~ 304 (640)
.+++..+|-+.+.+-..+++
T Consensus 88 ~~sVs~EL~ele~krqel~s 107 (907)
T KOG2264|consen 88 LASVSLELTELEVKRQELNS 107 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34444444444433333333
No 391
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=40.63 E-value=7.7e+02 Score=30.20 Aligned_cols=19 Identities=16% Similarity=0.034 Sum_probs=10.9
Q ss_pred CccchhHhhHHHHHHHHHh
Q 006565 592 NQEDYTKFTVQKLKQELTK 610 (640)
Q Consensus 592 ~~~~y~k~t~~kl~~el~~ 610 (640)
..=|-+-+|+..-..+|.+
T Consensus 694 ~~ldl~G~~~~eA~~~l~~ 712 (771)
T TIGR01069 694 LTLDLRGQRSEEALDRLEK 712 (771)
T ss_pred ceEECCCCCHHHHHHHHHH
Confidence 3445566666666655554
No 392
>PHA03386 P10 fibrous body protein; Provisional
Probab=40.31 E-value=1.1e+02 Score=27.80 Aligned_cols=28 Identities=18% Similarity=0.264 Sum_probs=23.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhhhh
Q 006565 486 NAMAERLSLEVQSAQAKLDEMQQELTKA 513 (640)
Q Consensus 486 nrrleal~~e~~~lqs~id~Leg~~~~~ 513 (640)
+..++++..++..+..++.+++..+++.
T Consensus 35 ~~~LDa~~~qL~~l~tkV~~Iq~iLn~d 62 (94)
T PHA03386 35 SQPLDGLPAQLTELDTKVSDIQSILTGD 62 (94)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHhcCcc
Confidence 5578888888888999999888887764
No 393
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=40.28 E-value=4.9e+02 Score=27.86 Aligned_cols=112 Identities=15% Similarity=0.140 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 216 EVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAA 295 (640)
Q Consensus 216 el~Ewkrky~~L~~QAKkAeek~a~L~er~~~~~q~r~~a~ree~~s~le~kE~kie~~k~ei~~aEq~la~~q~eL~e~ 295 (640)
+..=|+-=.-.+.--+..+.+.+...++... +.+..+++-..++....-.++..-+.++-+....-.+..+....++..
T Consensus 14 E~~ywk~l~~~ykq~f~~~reEl~EFQegSr-E~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q 92 (333)
T KOG1853|consen 14 EDQYWKLLHHEYKQHFLQMREELNEFQEGSR-EIEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQ 92 (333)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344554444444445556677777777664 666666666666666666666666666666666666666666666665
Q ss_pred HHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 006565 296 ESKMRSYEVEISSQKLETKELSEKLEAVNAKAQ 328 (640)
Q Consensus 296 e~kIk~~e~ei~~le~el~~L~ekle~~~~eie 328 (640)
++.+..-.+-.....+++..-..+++.++..++
T Consensus 93 ~s~Leddlsqt~aikeql~kyiReLEQaNDdLE 125 (333)
T KOG1853|consen 93 ESQLEDDLSQTHAIKEQLRKYIRELEQANDDLE 125 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 555544444444444444444444444444433
No 394
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=40.25 E-value=2.2e+02 Score=23.82 Aligned_cols=45 Identities=31% Similarity=0.400 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhHHHHhhhcHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 006565 411 IESLERQKTDLTNEVNRIRESELEALSK-VALLEARVEEREKEIESL 456 (640)
Q Consensus 411 IE~lEre~e~Le~E~~~l~~sEl~al~k-v~~lE~~vee~e~eiE~L 456 (640)
++.--+-...+..++.+.+ +.--++.. +.+.+.+..++..+|+.|
T Consensus 6 L~~EirakQ~~~eEL~kvk-~~n~~~e~kLqeaE~rn~eL~~ei~~L 51 (61)
T PF08826_consen 6 LEAEIRAKQAIQEELTKVK-SANLAFESKLQEAEKRNRELEQEIERL 51 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444445555555555 33223333 444444444444444444
No 395
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=40.19 E-value=3.9e+02 Score=30.49 Aligned_cols=127 Identities=13% Similarity=0.140 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 006565 395 NLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSK-VALLEARVEEREKEIESLLESNNEQRASTVKKLED 473 (640)
Q Consensus 395 r~~~qrlaeIerl~~qIE~lEre~e~Le~E~~~l~~sEl~al~k-v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~ 473 (640)
|-++..-. ..+....+++-.++++|+.-++.|+ .+.+.+ +.-....++....++..+ ...+..+...|....-
T Consensus 201 R~~~~~~k--~~L~~~sd~Ll~kVdDLQD~VE~LR---kDV~~RgvRp~~~qle~v~kdi~~a-~~~L~~m~~~i~~~kp 274 (424)
T PF03915_consen 201 RAYMESGK--KKLSEESDRLLTKVDDLQDLVEDLR---KDVVQRGVRPSPKQLETVAKDISRA-SKELKKMKEYIKTEKP 274 (424)
T ss_dssp HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH-----HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHcCCcCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCH
Confidence 44444443 4555666666777777777777777 445555 666666666666666666 6555555555544432
Q ss_pred HHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhcccccccchhhhh
Q 006565 474 LLESE-RRSRAAANAMAERLSLEVQSAQAKLDEMQQELTKARLNETALGSKLRAV 527 (640)
Q Consensus 474 ~le~~-re~l~e~nrrleal~~e~~~lqs~id~Leg~~~~~~~~et~l~~~~k~~ 527 (640)
..... ...|...-+.-.-+..|-+++..+.+-++...+-+.+.|-+-.-..+..
T Consensus 275 ~WkKiWE~EL~~V~eEQqfL~~QedL~~DL~eDl~k~~etf~lveq~~~~Q~k~~ 329 (424)
T PF03915_consen 275 IWKKIWESELQKVCEEQQFLKLQEDLLSDLKEDLKKASETFALVEQCTEEQEKSP 329 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC
Confidence 22111 0112222222333344444555555555555555555554444334443
No 396
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=39.69 E-value=2.2e+02 Score=28.26 Aligned_cols=17 Identities=29% Similarity=0.485 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 006565 400 RMAVIERVQRQIESLER 416 (640)
Q Consensus 400 rlaeIerl~~qIE~lEr 416 (640)
..++++.+..|.+++.+
T Consensus 173 ~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 173 KEKEIEALKKQSEGLQK 189 (192)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33334444444444433
No 397
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=39.54 E-value=5.4e+02 Score=28.07 Aligned_cols=85 Identities=22% Similarity=0.270 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcHHH
Q 006565 353 ERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESE 432 (640)
Q Consensus 353 er~ee~~~rleeaEee~kea~e~~~~areead~aq~E~~elQr~~~qrlaeIerl~~qIE~lEre~e~Le~E~~~l~~sE 432 (640)
.+.......+..++..+......+......+...+.+..........+..++...+..+++..+=+..|.++..|+. ..
T Consensus 221 ~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~-~~ 299 (344)
T PF12777_consen 221 QKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWS-EQ 299 (344)
T ss_dssp HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCH-CH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHH-HH
Confidence 44444445555555555555555555555555556666666666666666677777777777888888888888887 66
Q ss_pred HHHHHH
Q 006565 433 LEALSK 438 (640)
Q Consensus 433 l~al~k 438 (640)
+..+..
T Consensus 300 ~~~l~~ 305 (344)
T PF12777_consen 300 IEELEE 305 (344)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555555
No 398
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=39.45 E-value=6.2e+02 Score=28.79 Aligned_cols=44 Identities=16% Similarity=0.127 Sum_probs=34.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHhhhhhcccccccchhhhhhccc
Q 006565 488 MAERLSLEVQSAQAKLDEMQQELTKARLNETALGSKLRAVSHGK 531 (640)
Q Consensus 488 rleal~~e~~~lqs~id~Leg~~~~~~~~et~l~~~~k~~~~~k 531 (640)
.++....+..+....|+.+..++.+.--.++++.++++.+|+.-
T Consensus 136 ~l~d~~~~~~lId~~i~~l~~~~~~~~~~~~~~~~~m~~~sr~~ 179 (445)
T PRK13428 136 HVADPAQQSATVDRFLDELDAMAPSTADVDYPLLAKMRSASRRA 179 (445)
T ss_pred HcCCHHHHHHHHHHHHHHhhccCCCchhhcCchhhhhhHhhHHH
Confidence 34334555677888888888888888888999999999987654
No 399
>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=39.35 E-value=3.5e+02 Score=28.24 Aligned_cols=62 Identities=8% Similarity=-0.015 Sum_probs=39.2
Q ss_pred hhchHHHHHHHHH-------hHHH----------------hHHHHHHhhhcCchhHHHHHHHHHHhhHHhHHHHHHHhhH
Q 006565 64 SEGPILDLVKRLI-------DQIG----------------SERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDD 120 (640)
Q Consensus 64 l~~~~~d~~~~~~-------~~i~----------------~~~~~l~~~c~s~~~k~~~~~k~le~~~k~~~~~~k~~e~ 120 (640)
|-.||.+|.+..+ |... ....+|++.-+.+.+|++.....|+...+....+++.|+.
T Consensus 103 l~d~L~~~~~~~~~vKealtnR~~~~re~~qAq~~~~~K~~~~~rlk~s~~i~~~KvdeA~~~l~eA~~~e~~l~~k~~r 182 (230)
T cd07625 103 LYDGLEWISRDAYVVKEALTNRHLLMRELIQAQQNTKSKQEAARRLKAKRDINPLKVDEAIRQLEEATKHEHDLSLKLKR 182 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999988877 2211 1222333333334668888888888777777777777765
Q ss_pred HhHHH
Q 006565 121 AINDK 125 (640)
Q Consensus 121 ~i~d~ 125 (640)
--...
T Consensus 183 Is~nm 187 (230)
T cd07625 183 ITGNM 187 (230)
T ss_pred HHHHH
Confidence 54444
No 400
>PRK00295 hypothetical protein; Provisional
Probab=39.33 E-value=1.8e+02 Score=24.54 Aligned_cols=43 Identities=19% Similarity=0.227 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 006565 465 ASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQ 507 (640)
Q Consensus 465 ~~~l~~le~~le~~re~l~e~nrrleal~~e~~~lqs~id~Le 507 (640)
...+--.+.-|+++-..+.+..+.++.+..++..+...+..++
T Consensus 11 E~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 11 ESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444444444555555555555566666665555555555543
No 401
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=39.06 E-value=1.2e+02 Score=26.51 Aligned_cols=30 Identities=20% Similarity=0.278 Sum_probs=25.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhhh
Q 006565 483 AAANAMAERLSLEVQSAQAKLDEMQQELTK 512 (640)
Q Consensus 483 ~e~nrrleal~~e~~~lqs~id~Leg~~~~ 512 (640)
.+.+.++++...++..++..+.+++..+++
T Consensus 38 ~~l~~klDa~~~~l~~l~~~V~~I~~iL~~ 67 (75)
T PF05531_consen 38 TELNKKLDAQSAQLTTLNTKVNEIQDILNP 67 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 347778899999999999999999888774
No 402
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=38.71 E-value=3.7e+02 Score=25.97 Aligned_cols=74 Identities=19% Similarity=0.178 Sum_probs=0.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 006565 382 EAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSK-VALLEARVEEREKEIESL 456 (640)
Q Consensus 382 ead~aq~E~~elQr~~~qrlaeIerl~~qIE~lEre~e~Le~E~~~l~~sEl~al~k-v~~lE~~vee~e~eiE~L 456 (640)
....++......++.+....+.|.....+|..+............+|+ ........ ...-+.+++++..+-+.|
T Consensus 20 ~~~~l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr-~~~~~~~~~l~~re~~i~rL~~ENe~l 94 (135)
T TIGR03495 20 RLRNARADLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLR-QQLAQARALLAQREQRIERLKRENEDL 94 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHcCHHH
No 403
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=38.56 E-value=2.8e+02 Score=24.46 Aligned_cols=86 Identities=9% Similarity=0.140 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhcHHHH-HHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 006565 404 IERVQRQIESLERQKTDLTNEVNRIRESEL-EALSK-VALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRS 481 (640)
Q Consensus 404 Ierl~~qIE~lEre~e~Le~E~~~l~~sEl-~al~k-v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~ 481 (640)
+..+...+..++.....+.......+ ..+ ..|.. +..|+.+-...-.+++..-......+...+..++..+..+...
T Consensus 16 ~~~~~~~~~~l~~~~~~l~~~~~~~~-~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~~l~~l~~~ 94 (127)
T smart00502 16 AAELEDALKQLISIIQEVEENAADVE-AQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQKQEKLSHA 94 (127)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33343444444444444444444444 332 33333 4445444444445555443333444555666666666666666
Q ss_pred HHHHHHHHH
Q 006565 482 RAAANAMAE 490 (640)
Q Consensus 482 l~e~nrrle 490 (640)
+......+.
T Consensus 95 ~~~~e~~l~ 103 (127)
T smart00502 95 INFTEEALN 103 (127)
T ss_pred HHHHHHHHH
Confidence 666655554
No 404
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=38.53 E-value=4e+02 Score=26.29 Aligned_cols=101 Identities=16% Similarity=0.267 Sum_probs=54.2
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhh
Q 006565 382 EAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSK-VALLEARVEEREKEIESLLESN 460 (640)
Q Consensus 382 ead~aq~E~~elQr~~~qrlaeIerl~~qIE~lEre~e~Le~E~~~l~~sEl~al~k-v~~lE~~vee~e~eiE~L~~~~ 460 (640)
.+..++.---++++..++....+.-.-..++.-.+++..+..++..+. +-..+ |..+-.+|+..+.++.-|
T Consensus 32 als~f~AkEeeIErkKmeVrekVq~~LgrveEetkrLa~ireeLE~l~----dP~RkEv~~vRkkID~vNreLkpl---- 103 (159)
T PF04949_consen 32 ALSAFRAKEEEIERKKMEVREKVQAQLGRVEEETKRLAEIREELEVLA----DPMRKEVEMVRKKIDSVNRELKPL---- 103 (159)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhc----cchHHHHHHHHHHHHHHHHHhhHH----
Confidence 334445555556666666655444333344444444333333333222 33344 777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 006565 461 NEQRASTVKKLEDLLESERRSRAAANAMAERLSL 494 (640)
Q Consensus 461 ~eq~~~~l~~le~~le~~re~l~e~nrrleal~~ 494 (640)
..+.+.-+.+...-.++.+++|+.-..|-.
T Consensus 104 ----~~~cqKKEkEykealea~nEknkeK~~Lv~ 133 (159)
T PF04949_consen 104 ----GQSCQKKEKEYKEALEAFNEKNKEKAQLVT 133 (159)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555566555556666666666554443
No 405
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=37.89 E-value=3.2e+02 Score=27.04 Aligned_cols=46 Identities=24% Similarity=0.480 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhHHHHhhhcHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 006565 410 QIESLERQKTDLTNEVNRIRESELEALSK-VALLEARVEEREKEIESL 456 (640)
Q Consensus 410 qIE~lEre~e~Le~E~~~l~~sEl~al~k-v~~lE~~vee~e~eiE~L 456 (640)
+|+...-+.+..++++-++. -+.....+ .......|++++..+..|
T Consensus 45 ~id~imer~~~ieNdlg~~~-~~~~g~kk~~~~~~eelerLe~~iKdl 91 (157)
T COG3352 45 VIDAIMERMTDIENDLGKVK-IEIEGQKKQLQDIKEELERLEENIKDL 91 (157)
T ss_pred HHHHHHHHHHHHHhhccccc-ccccchhhhHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555 44444444 444444444444444444
No 406
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=37.57 E-value=4.6e+02 Score=26.71 Aligned_cols=25 Identities=16% Similarity=0.392 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 205 AAREQALSAQEEVEEWKRKYGVAVR 229 (640)
Q Consensus 205 at~enL~RVkDel~Ewkrky~~L~~ 229 (640)
.+..++......+.+|..+-..+..
T Consensus 56 ~~e~~~~~~~~~~~~~~~~A~~Al~ 80 (219)
T TIGR02977 56 ELERRVSRLEAQVADWQEKAELALS 80 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455666667777766555544
No 407
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=37.02 E-value=2.8e+02 Score=27.12 Aligned_cols=79 Identities=20% Similarity=0.241 Sum_probs=58.1
Q ss_pred HHHhHHhhhcchHHhHHhhHHhHHhhhhhhHHHHHHHHHHHhHhhHhhHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHH
Q 006565 135 RINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSA 213 (640)
Q Consensus 135 ~~~~l~~k~~s~ee~~~~l~k~le~~~~e~~ew~~kYe~~~~~~k~~~~~~AAGIsklK~Rkkeae~RL~at~enL~RV 213 (640)
++..|..-+...+.--..+..+|++...+..+=--.|-.+|-...+..+-+.+.|..|..|++..+.+....+.-|.+.
T Consensus 9 ~~~~l~~~~e~~~~d~e~~~dtLe~i~~~~~~K~~~~~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL~~~ 87 (162)
T PF05565_consen 9 EYLELLELLEEGDLDEEAIADTLESIEDEIEEKADNIAKVIKNLEADIEAIKAEIKRLQERKKSIENRIDRLKEYLLDA 87 (162)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334443333332233456677777777777767778888888888999999999999999999999999988887765
No 408
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=36.92 E-value=7.8e+02 Score=29.16 Aligned_cols=22 Identities=18% Similarity=0.330 Sum_probs=12.6
Q ss_pred ccccccccccccccCcchHHhhhhcc
Q 006565 535 ADDYEAGVGSVQEMDTNDKVLRANKR 560 (640)
Q Consensus 535 ~~~~~~~~~sv~d~~~~~~~~r~~kr 560 (640)
+|.||+|++.- +.+.|.+.-++
T Consensus 459 FDEVD~GIsG~----~A~aVg~~L~~ 480 (557)
T COG0497 459 FDEVDTGISGR----VAQAVGKKLRR 480 (557)
T ss_pred EecccCCCChH----HHHHHHHHHHH
Confidence 47888887752 23455554444
No 409
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=36.77 E-value=9.6e+02 Score=30.19 Aligned_cols=21 Identities=19% Similarity=0.181 Sum_probs=8.9
Q ss_pred HHhhhcCchhHHHHHHHHHHh
Q 006565 86 LMLKYRSIEDNMKLLKKQLED 106 (640)
Q Consensus 86 l~~~c~s~~~k~~~~~k~le~ 106 (640)
+.-..+....+++.+..++++
T Consensus 185 ~~~~~~~~~~~~~~l~~~~~~ 205 (1042)
T TIGR00618 185 EFAKKKSLHGKAELLTLRSQL 205 (1042)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 333333344444444444433
No 410
>TIGR03652 FeS_repair_RIC iron-sulfur cluster repair di-iron protein. Members of this protein family, designated variously as YftE, NorA, DrnN, and NipC, are di-iron proteins involved in the repair of iron-sulfur clusters. Previously assigned names reflect pleiotropic effects of damage from NO or other oxidative stress when this protein is mutated. The suggested name now is RIC, for Repair of Iron Centers.
Probab=36.64 E-value=1e+02 Score=31.35 Aligned_cols=92 Identities=13% Similarity=0.190 Sum_probs=56.6
Q ss_pred HHHHHHhcCCCCcchhhHHHHHHHHHHhhhhcccCCchHHHHH-HHHHHhhhchHHHHHHHHHhHHHhHHHHHHhhhcCc
Q 006565 15 ERKLRAACHSSDASIDNVVKVLDGLISEYETSCHGPGKWQKLA-TFLQQSSEGPILDLVKRLIDQIGSERSSLMLKYRSI 93 (640)
Q Consensus 15 e~~l~~ac~~~~a~~~~~~~~l~~~l~~y~~s~~G~g~~~k~~-~~L~~~l~~~~~d~~~~~~~~i~~~~~~l~~~c~s~ 93 (640)
.+-|..||...+.+++.|+..|+.+.+.... .++..|+.+. ..|=..+....-++-++.+..+...=.++...=-..
T Consensus 27 ~~~l~~a~~~~g~d~~~~l~~ln~~~~~~~~--~~~~~~~~~~~~~Lid~i~~~hH~~i~~~l~~L~~l~~kv~~~hg~~ 104 (216)
T TIGR03652 27 NVSLAEACKEKGLDPDEILAELNALQQEPEN--SGAKDWREAPLSELIDHIVDRHHEYLREELPELIPLATKVARVHGDH 104 (216)
T ss_pred cchHHHHHHHcCCCHHHHHHHHHHHHhcccc--ccccChhhCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 6778999999999999999999998755422 2335677432 345555555556666777766666555554321122
Q ss_pred hhHHHHHHHHHHhhH
Q 006565 94 EDNMKLLKKQLEDSE 108 (640)
Q Consensus 94 ~~k~~~~~k~le~~~ 108 (640)
.+-+..+++.+..+.
T Consensus 105 ~~~l~~l~~~~~~~~ 119 (216)
T TIGR03652 105 HPELIGLAELFRELK 119 (216)
T ss_pred ChhHHHHHHHHHHHH
Confidence 233445555554433
No 411
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=36.39 E-value=3.8e+02 Score=25.40 Aligned_cols=18 Identities=44% Similarity=0.460 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 006565 439 VALLEARVEEREKEIESL 456 (640)
Q Consensus 439 v~~lE~~vee~e~eiE~L 456 (640)
+..|+.+++.++-++..|
T Consensus 72 ~~eL~er~E~Le~ri~tL 89 (119)
T COG1382 72 VDELEERKETLELRIKTL 89 (119)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444433
No 412
>PRK00846 hypothetical protein; Provisional
Probab=36.22 E-value=2.5e+02 Score=24.65 Aligned_cols=21 Identities=5% Similarity=-0.217 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 006565 324 NAKAQSFEREARIMEQDKVYL 344 (640)
Q Consensus 324 ~~eies~e~el~~L~~ei~~L 344 (640)
+..+......+..|...+..|
T Consensus 33 N~~v~~qq~~I~~L~~ql~~L 53 (77)
T PRK00846 33 SEALADARLTGARNAELIRHL 53 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 413
>PRK15396 murein lipoprotein; Provisional
Probab=36.13 E-value=2e+02 Score=25.24 Aligned_cols=46 Identities=13% Similarity=0.330 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 445 RVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAER 491 (640)
Q Consensus 445 ~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~l~e~nrrlea 491 (640)
.|+.+..++..| .....++.+.+..+...+..-.++-+++|.|+|.
T Consensus 26 kvd~LssqV~~L-~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn 71 (78)
T PRK15396 26 KIDQLSSDVQTL-NAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDN 71 (78)
T ss_pred hHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444 4444444555555555555555566666666664
No 414
>PF13166 AAA_13: AAA domain
Probab=35.94 E-value=8e+02 Score=29.03 Aligned_cols=10 Identities=30% Similarity=0.295 Sum_probs=3.8
Q ss_pred HHHHHHHHHh
Q 006565 483 AAANAMAERL 492 (640)
Q Consensus 483 ~e~nrrleal 492 (640)
...|..+..+
T Consensus 462 ~~iN~~L~~~ 471 (712)
T PF13166_consen 462 DRINEELKRL 471 (712)
T ss_pred HHHHHHHHHh
Confidence 3333333333
No 415
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=35.93 E-value=3.5e+02 Score=24.84 Aligned_cols=33 Identities=15% Similarity=0.209 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 006565 271 MKEKATKIEHAEQCLTTLRLELKAAESKMRSYE 303 (640)
Q Consensus 271 ie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e 303 (640)
.+.+...+..+.+.+......|..+...+..+.
T Consensus 15 ed~a~~~la~~~~~~~~~~~~l~~l~~~~~~~~ 47 (141)
T TIGR02473 15 EEQAKLELAKAQAEFERLETQLQQLIKYREEYE 47 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444443333333
No 416
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=35.89 E-value=1.8e+02 Score=23.99 Aligned_cols=43 Identities=16% Similarity=0.323 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 314 KELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFE 356 (640)
Q Consensus 314 ~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~e 356 (640)
..|+.++-++.+.+...+++...+..+++.+.+.+.-...-|+
T Consensus 3 ~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~lYE 45 (55)
T PF05377_consen 3 DELENELPRIESSINTVKKENEEISESVEKIEENVKDLLSLYE 45 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555555555555555555444443333333
No 417
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=35.85 E-value=4.4e+02 Score=25.97 Aligned_cols=134 Identities=12% Similarity=0.162 Sum_probs=0.0
Q ss_pred CCcchhhHHHHHHHHHHhhhhcccCCchHH-HHHHHHHHh------hhchHHHHHHHHHhHHHhHHHHHHhhhcCchhHH
Q 006565 25 SDASIDNVVKVLDGLISEYETSCHGPGKWQ-KLATFLQQS------SEGPILDLVKRLIDQIGSERSSLMLKYRSIEDNM 97 (640)
Q Consensus 25 ~~a~~~~~~~~l~~~l~~y~~s~~G~g~~~-k~~~~L~~~------l~~~~~d~~~~~~~~i~~~~~~l~~~c~s~~~k~ 97 (640)
|...=+-++.++-.+++.--..+.+..-.+ .++..-+.+ |++-+....+..|+.+.++..+|+.-+....+++
T Consensus 17 t~~QAe~i~~~l~~~l~~~~~~~~~~~vtk~d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L 96 (177)
T PF07798_consen 17 TEEQAEAIMKALREVLNDSLEKVAQDLVTKSDLENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQEL 96 (177)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhHHhHHHHHHHhhHHhHHHHHhhHHHHHHHHhHHhhhcchHHhHHhhHHhHHhhhhhhHHH
Q 006565 98 KLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDW 167 (640)
Q Consensus 98 ~~~~k~le~~~k~~~~~~k~~e~~i~d~kk~~~~~~~~~~~l~~k~~s~ee~~~~l~k~le~~~~e~~ew 167 (640)
..-...|.+..++--...|. +..+.....-..++.=-..++...+.|..+++++|-+-.-|
T Consensus 97 ~~ei~~l~a~~klD~n~eK~---------~~r~e~~~~~~ki~e~~~ki~~ei~~lr~~iE~~K~~~lr~ 157 (177)
T PF07798_consen 97 REEINKLRAEVKLDLNLEKG---------RIREEQAKQELKIQELNNKIDTEIANLRTEIESLKWDTLRW 157 (177)
T ss_pred HHHHHHHHHHHHHHHHHhHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 418
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=35.80 E-value=5.2e+02 Score=28.08 Aligned_cols=7 Identities=0% Similarity=-0.320 Sum_probs=2.7
Q ss_pred HHhhhhh
Q 006565 508 QELTKAR 514 (640)
Q Consensus 508 g~~~~~~ 514 (640)
|.+-.++
T Consensus 240 g~~v~i~ 246 (370)
T PRK11578 240 GQKAWFT 246 (370)
T ss_pred CCEEEEE
Confidence 3333343
No 419
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=35.67 E-value=42 Score=30.62 Aligned_cols=48 Identities=29% Similarity=0.372 Sum_probs=23.9
Q ss_pred HHhHHHHhhhcHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 006565 419 TDLTNEVNRIRESELEALSK--VALLEARVEEREKEIESLLESNNEQRASTV 468 (640)
Q Consensus 419 e~Le~E~~~l~~sEl~al~k--v~~lE~~vee~e~eiE~L~~~~~eq~~~~l 468 (640)
..++..+..+. +|++.|+. +.+.-..|..-+.+-..+ ...+.++..++
T Consensus 11 ~~ae~~~~~ie-~ElEeLTasLFeEAN~MVa~ar~e~~~~-e~k~~~le~~l 60 (100)
T PF06428_consen 11 EEAEQEKEQIE-SELEELTASLFEEANKMVADARRERAAL-EEKNEQLEKQL 60 (100)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCT
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 33444455555 55555555 566666665555544444 34333333333
No 420
>PF06920 Ded_cyto: Dedicator of cytokinesis; InterPro: IPR010703 This family represents a conserved region of approximately 200 residues within a number of eukaryotic dedicator of cytokinesis (DOCK) proteins. These proteins are potential guanine nucleotide exchange factors that activate some small GTPases, such as Rac, by exchanging bound GDP for free GTP []. DOCK proteins are required during several cellular processes, such as cell motility and phagocytosis. For instance, DOCK2 is specifically expressed in haemopoietic cells, and plays a critical role in lymphocyte migration [].; GO: 0005085 guanyl-nucleotide exchange factor activity, 0005525 GTP binding, 0051020 GTPase binding; PDB: 2WMO_A 2WM9_A 2WMN_A 3VHL_A 3B13_A 2YIN_B.
Probab=35.65 E-value=1.7e+02 Score=28.83 Aligned_cols=96 Identities=22% Similarity=0.299 Sum_probs=54.2
Q ss_pred hhHHHHHHHHH---HHHhcCCCCcchhhHHHHHHHHHHhhhhcccCCchHHHHHHHHHHh-----hhchHHHHHHHHHhH
Q 006565 7 CSSAIQSMERK---LRAACHSSDASIDNVVKVLDGLISEYETSCHGPGKWQKLATFLQQS-----SEGPILDLVKRLIDQ 78 (640)
Q Consensus 7 c~~~~~~me~~---l~~ac~~~~a~~~~~~~~l~~~l~~y~~s~~G~g~~~k~~~~L~~~-----l~~~~~d~~~~~~~~ 78 (640)
+-+||..|++| |.++++..-.++..+-.+|.|.|.. .|..|--.--..||... -...+..|+.-..+.
T Consensus 64 ie~Aie~i~~k~~eL~~~~~~~~~~~~~L~~~L~G~v~a----~VngG~~~y~~~Fl~~~~~~~~~~~~~~~L~~~~~~~ 139 (178)
T PF06920_consen 64 IENAIEDIEKKNKELEELINSYKPNINPLQMLLQGSVDA----AVNGGPSKYAEAFLSPEYLHPEDKELVEKLKEAFIDQ 139 (178)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSS-HHHHHHHHHHHHS-----SSS-TTHHHHHHHSSCHHCSHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccchhHHHHHhcccccc----cccCchHHHHHHHcCccccCcccHHHHHHHHHHHHHH
Confidence 45789999987 5566776668888888999999876 23333333335676622 122222233333366
Q ss_pred HHhHHHHHHhhhcCchhHHHHHHHHHHh
Q 006565 79 IGSERSSLMLKYRSIEDNMKLLKKQLED 106 (640)
Q Consensus 79 i~~~~~~l~~~c~s~~~k~~~~~k~le~ 106 (640)
+...+..|.+-=+.....+..+|..|+.
T Consensus 140 ~~~~~~~L~~h~~~~~~~~~~lh~~le~ 167 (178)
T PF06920_consen 140 LIVLERALELHKKLCSPEQRPLHEELES 167 (178)
T ss_dssp HHHHHHHHHHHHHC--GGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCChhHHHHHHHHHH
Confidence 6666666666544555555556666554
No 421
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.54 E-value=5.5e+02 Score=27.03 Aligned_cols=71 Identities=17% Similarity=0.192 Sum_probs=41.4
Q ss_pred HHHHHHhHHHHhhhcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 415 ERQKTDLTNEVNRIRESELEALSK-VALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANA 487 (640)
Q Consensus 415 Ere~e~Le~E~~~l~~sEl~al~k-v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~l~e~nr 487 (640)
..+.+++...+..-. .|+..+.. +++-+.+.--.+.++-.+ +++.+.+...++.+..++...++-+.+++.
T Consensus 57 ~~e~e~l~~~l~ete-ne~~~~neL~~ek~~~q~~ieqeik~~-q~elEvl~~n~Q~lkeE~dd~keiIs~kr~ 128 (246)
T KOG4657|consen 57 QVELENLKADLRETE-NELVKVNELKTEKEARQMGIEQEIKAT-QSELEVLRRNLQLLKEEKDDSKEIISQKRQ 128 (246)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 333444433343333 44444444 555555556666666666 666666677777777777777766666654
No 422
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=35.38 E-value=4.9e+02 Score=28.76 Aligned_cols=56 Identities=21% Similarity=0.257 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHH
Q 006565 269 EEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVN 324 (640)
Q Consensus 269 ~kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~ 324 (640)
.+++++..++.+.+..-..+...+.+...-.+.+.+.|..-+.+++.|...+...+
T Consensus 4 eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~ 59 (330)
T PF07851_consen 4 EEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCK 59 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 36777777777777777777777777777777777777777777777777777764
No 423
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=35.26 E-value=2.5e+02 Score=29.58 Aligned_cols=32 Identities=9% Similarity=0.010 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 006565 463 QRASTVKKLEDLLESERRSRAAANAMAERLSL 494 (640)
Q Consensus 463 q~~~~l~~le~~le~~re~l~e~nrrleal~~ 494 (640)
++..+|..+..++..+|.++.+.+..++.+.-
T Consensus 58 ~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~ 89 (263)
T PRK10803 58 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVE 89 (263)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 33445555555555555555554544444333
No 424
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=35.13 E-value=5.1e+02 Score=26.51 Aligned_cols=79 Identities=20% Similarity=0.231 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 341 KVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKT 419 (640)
Q Consensus 341 i~~L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~areead~aq~E~~elQr~~~qrlaeIerl~~qIE~lEre~e 419 (640)
..+|+-........+.....+...+...+..+...-......=..+|.+...++-+.-...+++..++.+|..|+++.+
T Consensus 107 R~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~~ 185 (192)
T PF11180_consen 107 RAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQAN 185 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333333333333333333333333333333333333333333334455555555444445555555555555555443
No 425
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=34.65 E-value=5e+02 Score=26.28 Aligned_cols=15 Identities=0% Similarity=0.122 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q 006565 334 ARIMEQDKVYLEQKY 348 (640)
Q Consensus 334 l~~L~~ei~~L~ekl 348 (640)
++.|..+.....+++
T Consensus 125 i~~L~kev~~~~erl 139 (201)
T KOG4603|consen 125 IQELKKEVAGYRERL 139 (201)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 426
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=34.63 E-value=7.9e+02 Score=28.60 Aligned_cols=124 Identities=9% Similarity=0.089 Sum_probs=75.5
Q ss_pred HHhhHHhHHHHHHHhhHHhH-H---H-----HHhhH----HHHHHHHhHHhhhcchHHhHHhhHHhHHhhhhhhHHHHHH
Q 006565 104 LEDSERYKSEYLKRYDDAIN-D---K-----KKLAD----DYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRK 170 (640)
Q Consensus 104 le~~~k~~~~~~k~~e~~i~-d---~-----kk~~~----~~~~~~~~l~~k~~s~ee~~~~l~k~le~~~~e~~ew~~k 170 (640)
|+.+.-+.+|+.+|..+-=+ + + ..... .-...+..+...+..+-.++.+...+-=-.=+++.-|.-|
T Consensus 357 ldeL~EL~aFL~qRl~El~~~~~~~l~~~~~~~ap~~lq~~t~~~i~~ml~~V~~ii~~Lt~~~~~~L~~Ik~SprYvdr 436 (507)
T PF05600_consen 357 LDELLELEAFLKQRLYELSNEESSSLSFSQFQNAPSILQQQTAESIEEMLSAVEEIISQLTNPRTQHLFMIKSSPRYVDR 436 (507)
T ss_pred HHHHHHHHHHHHHHHHHhcccccchHHHHHhhhccHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcCHHHHHH
Confidence 45555788888888654331 0 0 11111 1222333333334444333333333322233566778888
Q ss_pred HHHHHhHhhHhhHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 171 YDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVA 227 (640)
Q Consensus 171 Ye~~~~~~k~~~~~~AAGIsklK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L 227 (640)
--..+.++....+.+...+..+..|..++..-+..+.-.|+.+.....++++..+.-
T Consensus 437 l~~~L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE~~ 493 (507)
T PF05600_consen 437 LVESLQQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTRELQKQIEAD 493 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888888888888877777777777777777766665543
No 427
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=34.48 E-value=7.6e+02 Score=28.32 Aligned_cols=56 Identities=25% Similarity=0.312 Sum_probs=26.4
Q ss_pred HHHHHHHhhHHHHHhhHHH-------HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 006565 293 KAAESKMRSYEVEISSQKL-------ETKELSEKLEAVNAKA-QSFEREARIMEQDKVYLEQKY 348 (640)
Q Consensus 293 ~e~e~kIk~~e~ei~~le~-------el~~L~ekle~~~~ei-es~e~el~~L~~ei~~L~ekl 348 (640)
+.+-.+|+.++++--.... ++=.|...++.-..-+ .++=++...|.++..-|..+|
T Consensus 161 nKlm~ki~Klen~t~~kq~~leQLRre~V~lentlEQEqEalvN~LwKrmdkLe~ekr~Lq~Kl 224 (552)
T KOG2129|consen 161 NKLMNKIRKLENKTLLKQNTLEQLRREAVQLENTLEQEQEALVNSLWKRMDKLEQEKRYLQKKL 224 (552)
T ss_pred HHHHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5566666666665433333 3333333333332222 233445555555555555554
No 428
>PRK02793 phi X174 lysis protein; Provisional
Probab=34.42 E-value=2.4e+02 Score=24.09 Aligned_cols=42 Identities=17% Similarity=0.062 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 006565 465 ASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEM 506 (640)
Q Consensus 465 ~~~l~~le~~le~~re~l~e~nrrleal~~e~~~lqs~id~L 506 (640)
...+--.+.-|+++-+.+.+..+.++.+..++..+...+..+
T Consensus 14 E~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 55 (72)
T PRK02793 14 ESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKAS 55 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444444555555555555555556665555555555555554
No 429
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=34.35 E-value=3.4e+02 Score=24.30 Aligned_cols=10 Identities=10% Similarity=0.361 Sum_probs=4.2
Q ss_pred HHhHHHHhhh
Q 006565 419 TDLTNEVNRI 428 (640)
Q Consensus 419 e~Le~E~~~l 428 (640)
+....++..+
T Consensus 33 ~~v~~EL~~l 42 (105)
T cd00632 33 KKALEELEKL 42 (105)
T ss_pred HHHHHHHHcC
Confidence 3344444444
No 430
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=34.23 E-value=2.8e+02 Score=32.79 Aligned_cols=38 Identities=18% Similarity=0.173 Sum_probs=21.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 307 SSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYL 344 (640)
Q Consensus 307 ~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L 344 (640)
.....+++.|+.+...++++|..+...+..+++.|..-
T Consensus 89 ~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~ 126 (907)
T KOG2264|consen 89 ASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQK 126 (907)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 34445556666666666666555555555555555443
No 431
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=34.03 E-value=4.7e+02 Score=27.57 Aligned_cols=59 Identities=15% Similarity=0.187 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhh
Q 006565 439 VALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQELTK 512 (640)
Q Consensus 439 v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~l~e~nrrleal~~e~~~lqs~id~Leg~~~~ 512 (640)
+..+-+.-+.++....+| +.+.-+...++..|.. .++.++.-=.-|=.+|..|+.|..+
T Consensus 81 LpIVtsQRDRFR~Rn~EL-E~elr~~~~~~~~L~~--------------Ev~~L~~DN~kLYEKiRylqSY~~~ 139 (248)
T PF08172_consen 81 LPIVTSQRDRFRQRNAEL-EEELRKQQQTISSLRR--------------EVESLRADNVKLYEKIRYLQSYNNK 139 (248)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHhhCccc
Confidence 444555555555555555 4444444444444444 4444444444556778888888754
No 432
>PF14992 TMCO5: TMCO5 family
Probab=33.92 E-value=6.4e+02 Score=27.28 Aligned_cols=157 Identities=13% Similarity=0.148 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006565 309 QKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARK 388 (640)
Q Consensus 309 le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~areead~aq~ 388 (640)
++..+..|.+....+-.+|+..+..+..|..+|..+....... +....-..+-+...+......+.+.......-.
T Consensus 9 le~d~Q~ldE~Nq~lL~ki~~~E~~iq~Le~Eit~~~~~~~~~----e~e~~~~~~~e~~l~~le~e~~~LE~~ne~l~~ 84 (280)
T PF14992_consen 9 LEKDEQRLDEANQSLLQKIQEKEGAIQSLEREITKMDHIADRS----EEEDIISEERETDLQELELETAKLEKENEHLSK 84 (280)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCch----hHHhhhhhchHHHHHHHHhhhHHHhhhhHhhhh
Q ss_pred hHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHH
Q 006565 389 GKSEFENLAMERMAVI----ERVQRQIESLERQKTDLTNEVNRIRESELEALSK-VALLEARVEEREKEIESLLESNNEQ 463 (640)
Q Consensus 389 E~~elQr~~~qrlaeI----erl~~qIE~lEre~e~Le~E~~~l~~sEl~al~k-v~~lE~~vee~e~eiE~L~~~~~eq 463 (640)
-+.++|+...+....+ ..+....+..+-.+..+......+. .++..+.. +...-.-.+..-..+..+ +.....
T Consensus 85 ~~~elq~k~~e~~~~~~~e~~~~~~~lq~sk~~lqql~~~~~~qE-~ei~kve~d~~~v~~l~eDq~~~i~kl-kE~L~r 162 (280)
T PF14992_consen 85 SVQELQRKQDEQETNVQCEDPQLSQSLQFSKNKLQQLLESCASQE-KEIAKVEDDYQQVHQLCEDQANEIKKL-KEKLRR 162 (280)
T ss_pred hhhhhhhhhccccCCCCCCccchhcccHHhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q ss_pred HHHHHHHH
Q 006565 464 RASTVKKL 471 (640)
Q Consensus 464 ~~~~l~~l 471 (640)
+.+..+.+
T Consensus 163 mE~ekE~~ 170 (280)
T PF14992_consen 163 MEEEKEML 170 (280)
T ss_pred HHHHHHHH
No 433
>PRK00736 hypothetical protein; Provisional
Probab=33.71 E-value=2.6e+02 Score=23.60 Aligned_cols=42 Identities=12% Similarity=0.125 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 006565 465 ASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEM 506 (640)
Q Consensus 465 ~~~l~~le~~le~~re~l~e~nrrleal~~e~~~lqs~id~L 506 (640)
...+.-.+.-|+.+-..+.+..+.++.+..++..+...+..+
T Consensus 11 E~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00736 11 EIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSL 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444444444455555555555555555555555444
No 434
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=33.66 E-value=1.8e+02 Score=30.21 Aligned_cols=60 Identities=22% Similarity=0.330 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 353 ERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQ 417 (640)
Q Consensus 353 er~ee~~~rleeaEee~kea~e~~~~areead~aq~E~~elQr~~~qrlaeIerl~~qIE~lEre 417 (640)
..|-....|++..+...++..+..+++. --.+..++++++.+...+|+.++.++..+..+
T Consensus 132 ~~y~D~~arl~~l~~~~~rl~~ll~ka~-----~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~ 191 (262)
T PF14257_consen 132 EQYVDLEARLKNLEAEEERLLELLEKAK-----TVEDLLEIERELSRVRSEIEQLEGQLKYLDDR 191 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444455555555555555555444332 12334445555444444444444444444443
No 435
>PRK04325 hypothetical protein; Provisional
Probab=33.66 E-value=2.5e+02 Score=24.09 Aligned_cols=43 Identities=12% Similarity=0.154 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 006565 465 ASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQ 507 (640)
Q Consensus 465 ~~~l~~le~~le~~re~l~e~nrrleal~~e~~~lqs~id~Le 507 (640)
+..+.-.+.-|+.+-..+....+.++.+..++..+..++..++
T Consensus 15 E~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 15 EIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444444444555555555555666666665556555555543
No 436
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=33.63 E-value=3.8e+02 Score=24.55 Aligned_cols=36 Identities=8% Similarity=0.140 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 309 QKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYL 344 (640)
Q Consensus 309 le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L 344 (640)
..+-+.+|..+...+...+..+...+..+...+..+
T Consensus 84 ~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i 119 (126)
T TIGR00293 84 AEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQL 119 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444
No 437
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=32.99 E-value=1.3e+02 Score=23.58 Aligned_cols=35 Identities=20% Similarity=0.376 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHH
Q 006565 402 AVIERVQRQIESLERQKTDLTNEVNRIRESELEALS 437 (640)
Q Consensus 402 aeIerl~~qIE~lEre~e~Le~E~~~l~~sEl~al~ 437 (640)
.+-+.|....++|....+.|..+...|+ .|+..+.
T Consensus 5 ~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~-aev~~L~ 39 (45)
T PF02183_consen 5 RDYDALKASYDSLKAEYDSLKKENEKLR-AEVQELK 39 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 3444555555555555555555555555 5544443
No 438
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=32.77 E-value=5.6e+02 Score=26.25 Aligned_cols=27 Identities=11% Similarity=0.056 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006565 220 WKRKYGVAVREAKAALEKAAIVQERTS 246 (640)
Q Consensus 220 wkrky~~L~~QAKkAeek~a~L~er~~ 246 (640)
|......|+...+..+..+..+...+.
T Consensus 134 W~~~n~~Le~~~~~le~~l~~~k~~ie 160 (221)
T PF05700_consen 134 WLIHNEQLEAMLKRLEKELAKLKKEIE 160 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555544444444444444443
No 439
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=32.64 E-value=8.4e+02 Score=28.30 Aligned_cols=13 Identities=8% Similarity=0.212 Sum_probs=5.2
Q ss_pred HhhhHHHHHHHHh
Q 006565 249 MQQREDVLREEFS 261 (640)
Q Consensus 249 ~q~r~~a~ree~~ 261 (640)
...+++++.+.+.
T Consensus 41 ~~~~~~~~~~~~~ 53 (475)
T PRK10361 41 MVAELSAAKQQIT 53 (475)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444433
No 440
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=32.52 E-value=4.2e+02 Score=27.93 Aligned_cols=53 Identities=19% Similarity=0.296 Sum_probs=35.4
Q ss_pred HHHhHHHHhhhcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 006565 418 KTDLTNEVNRIRESELEALSK-VALLEARVEEREKEIESLLESNNEQRASTVKKLE 472 (640)
Q Consensus 418 ~e~Le~E~~~l~~sEl~al~k-v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le 472 (640)
+-.+..+.+|.+ ....+++. +......+...+.+++.| +.++..+-++|.=+.
T Consensus 81 LpIVtsQRDRFR-~Rn~ELE~elr~~~~~~~~L~~Ev~~L-~~DN~kLYEKiRylq 134 (248)
T PF08172_consen 81 LPIVTSQRDRFR-QRNAELEEELRKQQQTISSLRREVESL-RADNVKLYEKIRYLQ 134 (248)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 334445555555 55555555 666667777788888888 888888888884443
No 441
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=32.47 E-value=4.4e+02 Score=24.92 Aligned_cols=55 Identities=16% Similarity=0.235 Sum_probs=21.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 304 VEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEV 358 (640)
Q Consensus 304 ~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~ 358 (640)
..+..+......|.+..-....++.....++.....+...+...|.....++..+
T Consensus 34 ~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l 88 (150)
T PF07200_consen 34 QEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDEL 88 (150)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444433344444444444444444444444444444333333
No 442
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=32.02 E-value=4e+02 Score=24.41 Aligned_cols=33 Identities=15% Similarity=0.117 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhH
Q 006565 277 KIEHAEQCLTTLRLELKAAESKMRSYEVEISSQ 309 (640)
Q Consensus 277 ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~l 309 (640)
.-..+...++..+..+......+..+.......
T Consensus 14 ~ed~a~~~la~~~~~~~~~~~~l~~l~~~~~~~ 46 (141)
T TIGR02473 14 EEEQAKLELAKAQAEFERLETQLQQLIKYREEY 46 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444333
No 443
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=32.00 E-value=3.9e+02 Score=24.74 Aligned_cols=16 Identities=13% Similarity=0.086 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 006565 475 LESERRSRAAANAMAE 490 (640)
Q Consensus 475 le~~re~l~e~nrrle 490 (640)
|+.+-..|...+.|||
T Consensus 83 L~~I~~~L~~inkRLD 98 (102)
T PF01519_consen 83 LQLILKTLQSINKRLD 98 (102)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3334444444444444
No 444
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.98 E-value=8.6e+02 Score=28.17 Aligned_cols=46 Identities=11% Similarity=0.121 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 006565 362 CKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERV 407 (640)
Q Consensus 362 leeaEee~kea~e~~~~areead~aq~E~~elQr~~~qrlaeIerl 407 (640)
......+.+++..-..+.++++.....|-.++|++..-.-..+.|.
T Consensus 384 rk~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se~L~Rs 429 (521)
T KOG1937|consen 384 RKVYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESEALNRS 429 (521)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3445566666666666666777666766666666664444434443
No 445
>PRK00846 hypothetical protein; Provisional
Probab=31.88 E-value=2.9e+02 Score=24.18 Aligned_cols=43 Identities=14% Similarity=0.105 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 006565 465 ASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQ 507 (640)
Q Consensus 465 ~~~l~~le~~le~~re~l~e~nrrleal~~e~~~lqs~id~Le 507 (640)
...+--.+.-|+.+-..+....+.++.+..++..+..++..++
T Consensus 19 E~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 19 ETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3334444444444444455555555555555555555555554
No 446
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=31.84 E-value=1.1e+03 Score=29.50 Aligned_cols=237 Identities=19% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHH------HhhHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 281 AEQCLTTLRLELKAAESKMRSYEVE------ISSQKLETKELSEKLEAVN-----AKAQSFEREARIMEQDKVYLEQKYK 349 (640)
Q Consensus 281 aEq~la~~q~eL~e~e~kIk~~e~e------i~~le~el~~L~ekle~~~-----~eies~e~el~~L~~ei~~L~ekl~ 349 (640)
+...+.+++-+.-....+++-..+. +..++.+|.-|...+-... ++++++-.+...+...++.+.....
T Consensus 301 ~~EtlnTl~ya~Rak~iknk~vvN~d~~~~~~~~lK~ql~~l~~ell~~~~~~~~~ei~sl~~e~~~l~~~~d~~~~e~~ 380 (913)
T KOG0244|consen 301 AQETLNTLRYADRAKQIKNKPVVNQDPKSFEMLKLKAQLEPLQVELLSKAGDELDAEINSLPFENVTLEETLDALLQEKG 380 (913)
T ss_pred hhhHHHHHHHhhHHHHhcccccccccHHHHHHHHHHHHHHHHHHHHHhhccccchhHHhhhhhhhhhhhhhHHHHhcchh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH----------------HHHHHHHH------------
Q 006565 350 SEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEF----------------ENLAMERM------------ 401 (640)
Q Consensus 350 se~er~ee~~~rleeaEee~kea~e~~~~areead~aq~E~~el----------------Qr~~~qrl------------ 401 (640)
.....+.....+.-.++.....+....+.....+..-..+...- +.-.+...
T Consensus 381 e~~s~~s~~~~~~~~~~~~k~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~v~~~~~e~~~~~~~~~~e~~~~~~~ 460 (913)
T KOG0244|consen 381 EERSTLSSKSLKLTGAEKEKDKLRRRTDSCMNLLSEDSNEDASDKSASLPKPLEPVDSGTEEIGMNTDTSGDEAAEKELS 460 (913)
T ss_pred hhhhhhhHHHHhcchhhhhHHHHHHHHHHHHHHHHHhHhHHhhhccccCCccccccccccccccccccCCCchhhhcccc
Q ss_pred ------HHHHHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-
Q 006565 402 ------AVIERVQRQIESLERQKTDLTNEVNRIRESELEALSK-VALLEARVEEREKEIESLLESNNEQRASTVKKLED- 473 (640)
Q Consensus 402 ------aeIerl~~qIE~lEre~e~Le~E~~~l~~sEl~al~k-v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~- 473 (640)
..+..+......++.++...+....+.. .+..++++ ...+|...-+.+.++-.+ +..-..+..++..+..
T Consensus 461 ~~~~~~~~q~~ls~el~el~k~l~~Ke~l~rr~~-~~~~~~~~~~~~~e~~~~~le~e~~~l-e~E~~~l~~el~~~~~~ 538 (913)
T KOG0244|consen 461 ETIGHPQKQGSLSGELSELEKRLAEKEPLTRRKA-YEKAEKSKAKEQYESDSGTLEAEKSPL-ESERSRLRNELNVFNRL 538 (913)
T ss_pred cCccchHHHhhhhHHHHHHHhhhccccHHHHHHH-HhhhhhhHHHHHHhhhhhhHHHHhccc-ccccHHHHHHHHhhhHH
Q ss_pred --HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhcccccccchhhh
Q 006565 474 --LLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQELTKARLNETALGSKLRA 526 (640)
Q Consensus 474 --~le~~re~l~e~nrrleal~~e~~~lqs~id~Leg~~~~~~~~et~l~~~~k~ 526 (640)
.+.+.+.+ ++..+.-++..++.++...-+.+.+..-.+- -..||++
T Consensus 539 ~~kl~eer~q------klk~le~q~s~lkk~l~~~~~l~~~~~~~~~-~~~kl~~ 586 (913)
T KOG0244|consen 539 AAKLGEERVQ------KLKSLETQISLLKKKLSSQRKLIKPKPKSEG-IRAKLLQ 586 (913)
T ss_pred HHHhhhHHHH------HHHHHHHHHHHHHHhhHHHHHHhccchhhHH-HHHHHHH
No 447
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=31.49 E-value=1.1e+03 Score=29.09 Aligned_cols=17 Identities=12% Similarity=0.165 Sum_probs=10.1
Q ss_pred ccchhHhhHHHHHHHHH
Q 006565 593 QEDYTKFTVQKLKQELT 609 (640)
Q Consensus 593 ~~~y~k~t~~kl~~el~ 609 (640)
.=|-+-+|+..-..+|.
T Consensus 706 ~lDL~G~~~eeA~~~l~ 722 (782)
T PRK00409 706 ELDLRGMRYEEALERLD 722 (782)
T ss_pred eEECCCCCHHHHHHHHH
Confidence 44556666666665555
No 448
>PF15369 KIAA1328: Uncharacterised protein KIAA1328
Probab=31.34 E-value=4.5e+02 Score=28.97 Aligned_cols=22 Identities=27% Similarity=0.271 Sum_probs=13.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHhh
Q 006565 490 ERLSLEVQSAQAKLDEMQQELT 511 (640)
Q Consensus 490 eal~~e~~~lqs~id~Leg~~~ 511 (640)
+++..+|-.-|.++..+|+|+.
T Consensus 57 ~~~~~qyrecqell~lyq~yls 78 (328)
T PF15369_consen 57 EDLQQQYRECQELLSLYQKYLS 78 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666653
No 449
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=31.32 E-value=6.7e+02 Score=26.76 Aligned_cols=34 Identities=12% Similarity=0.220 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhh
Q 006565 478 ERRSRAAANAMAERLSLEVQSAQAKLDEMQQELT 511 (640)
Q Consensus 478 ~re~l~e~nrrleal~~e~~~lqs~id~Leg~~~ 511 (640)
....+..-..-++.+..++..|++.|..|...+.
T Consensus 191 m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~~ 224 (258)
T PF15397_consen 191 MQKEIVQFREEIDELEEEIPQLRAEVEQLQAQAQ 224 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344444445555566666666666666655543
No 450
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=31.12 E-value=9.1e+02 Score=28.19 Aligned_cols=33 Identities=27% Similarity=0.503 Sum_probs=24.0
Q ss_pred hHHHHHHH-------HHHhhhhcccCCchHHHHHHHHHHh
Q 006565 31 NVVKVLDG-------LISEYETSCHGPGKWQKLATFLQQS 63 (640)
Q Consensus 31 ~~~~~l~~-------~l~~y~~s~~G~g~~~k~~~~L~~~ 63 (640)
.|+.+|-. .++.--.||+||..|.++-+.|+=-
T Consensus 163 eV~~~lKnL~YPfl~sI~kSqlsAI~ph~Wp~iLgMlhW~ 202 (622)
T COG5185 163 EVYQILKNLRYPFLESINKSQLSAIGPHNWPKILGMLHWM 202 (622)
T ss_pred HHHHHHHhcCCchhhhhhHhHhhccCCcchHHHHHHHHHH
Confidence 46666654 3566677899999999888877643
No 451
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=31.03 E-value=3.3e+02 Score=29.89 Aligned_cols=23 Identities=22% Similarity=0.166 Sum_probs=13.7
Q ss_pred cCcchHHhhhhccCCccCCCCCcc
Q 006565 548 MDTNDKVLRANKRSRSTTSPLKYT 571 (640)
Q Consensus 548 ~~~~~~~~r~~kr~~~t~~~~~~~ 571 (640)
.+.++.+.| ..-|=.|.||.+..
T Consensus 247 ~~L~pSP~R-~~npL~TSSP~r~~ 269 (323)
T PF08537_consen 247 RDLPPSPRR-PVNPLFTSSPMRKP 269 (323)
T ss_pred ccCCCCCCc-CCCCCcccCccccc
Confidence 455554433 34445689998774
No 452
>PF12022 DUF3510: Domain of unknown function (DUF3510); InterPro: IPR024603 The COG complex comprises eight proteins (COG1-8) and plays critical roles in Golgi structure and function []. This uncharacterised domain is found in the C-terminal of COG complex subunit 2 proteins.
Probab=30.46 E-value=1.5e+02 Score=27.72 Aligned_cols=65 Identities=14% Similarity=0.256 Sum_probs=42.8
Q ss_pred HHhcCCCCcchhhHHHHHHHHHHhhhhcccCCchHHHHHHHHHHhhhchHHHHH---HHHHhHHHhHHHHHH
Q 006565 19 RAACHSSDASIDNVVKVLDGLISEYETSCHGPGKWQKLATFLQQSSEGPILDLV---KRLIDQIGSERSSLM 87 (640)
Q Consensus 19 ~~ac~~~~a~~~~~~~~l~~~l~~y~~s~~G~g~~~k~~~~L~~~l~~~~~d~~---~~~~~~i~~~~~~l~ 87 (640)
|.++..|..=+++|+.-|..++..| ....+|... ..++...+..-...|. ...++.+..++.+|+
T Consensus 27 k~~Pt~~S~yV~~il~Pl~~F~~~~-~~~~~~~~~---~~~~~~v~~~v~~~y~~~~~evL~sv~KtEeSL~ 94 (125)
T PF12022_consen 27 KPVPTKPSPYVSSILRPLKSFLEEY-SSYLSPEII---EEWLQKVITEVTERYYEIASEVLTSVRKTEESLK 94 (125)
T ss_pred CCCCCCccHHHHHHHHHHHHHHHHh-hccCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478888899999999999999999 444444333 4455555554444444 445566666777664
No 453
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=30.43 E-value=4.9e+02 Score=24.84 Aligned_cols=66 Identities=8% Similarity=0.170 Sum_probs=28.5
Q ss_pred HHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHH
Q 006565 248 EMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLET 313 (640)
Q Consensus 248 ~~q~r~~a~ree~~s~le~kE~kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el 313 (640)
++-+.+.+.+..+...++.+..++++...-......+...++..+...-..+.....-...++..|
T Consensus 54 ~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki 119 (126)
T PF07889_consen 54 QVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKI 119 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444444444444433333333333333333
No 454
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.35 E-value=1e+03 Score=28.54 Aligned_cols=123 Identities=13% Similarity=0.172 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHhHHHHhhhc
Q 006565 358 VQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAM--------ERMAVIERVQRQIESLERQKTDLTNEVNRIR 429 (640)
Q Consensus 358 ~~~rleeaEee~kea~e~~~~areead~aq~E~~elQr~~~--------qrlaeIerl~~qIE~lEre~e~Le~E~~~l~ 429 (640)
....+..++.=|...-..-..++.++...|.++.+++.-.+ .+..+++.+-.++--|.-++..+.+ ..+|
T Consensus 414 ~~r~L~~~~~~~~~~~~~~~s~~~Ei~~~QA~M~E~~Dt~~~~dV~~~~sL~~~LeqAsK~CRIL~~RL~K~~R--~q~R 491 (852)
T KOG4787|consen 414 QVKQLETKVTPKPNFVVPSGTTTTELRKEQAQMNELKDTVFKSDVQKVISLATKLEQANKQCRILNERLNKLHR--KQVR 491 (852)
T ss_pred HHHHHhhccccchhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHhHHHH--HHHh
Confidence 34555555555555555556666666666666666665442 2333344443444444444444443 3333
Q ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 430 ESELEALSK--VALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRA 483 (640)
Q Consensus 430 ~sEl~al~k--v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~l~ 483 (640)
+++..+... +..||..+--= +++.--|..+.|....++..++...+.++....
T Consensus 492 ~~~~~~~d~~kIK~LE~e~R~S-~~Ls~~L~~ElE~~~~~~~~~e~~~evL~~~~~ 546 (852)
T KOG4787|consen 492 DGEIQYSDELKIKILELEKRLS-EKLAIDLVSELEGKIPTIDEIEQCCEVLAAVET 546 (852)
T ss_pred hhhhccchHHHHHHHHHHHHHH-HHHHHHHHHHHHhhcCcHhHHHHHHHHHHHHhh
Confidence 344433333 44444443322 222222255556656666666666655555433
No 455
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=30.21 E-value=7.4e+02 Score=26.89 Aligned_cols=197 Identities=16% Similarity=0.128 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 283 QCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERC 362 (640)
Q Consensus 283 q~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rl 362 (640)
++++.++.+|.....+......-|..+.+.+..+......+....+.++..+..++.+..-+--=---..-+|.+....+
T Consensus 9 a~iae~k~e~sAlhqK~~aKtdairiL~QdLEkfe~Ekd~~a~~aETLeln~ealere~eLlaa~gc~a~~e~gterqdL 88 (389)
T KOG4687|consen 9 AEIAELKKEFSALHQKCGAKTDAIRILGQDLEKFENEKDGLAARAETLELNLEALERELELLAACGCDAKIEFGTERQDL 88 (389)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHhcCCCchhhccchhhHH
Confidence 35666677777777777766666666666666666666666666655555555555554433100000012332222333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHH-HHH
Q 006565 363 KVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSK-VAL 441 (640)
Q Consensus 363 eeaEee~kea~e~~~~areead~aq~E~~elQr~~~qrlaeIerl~~qIE~lEre~e~Le~E~~~l~~sEl~al~k-v~~ 441 (640)
.+ .+...+.+-...+.+..++-.+..++...++-++..+...+.++.--..+-......|++--.. +..
T Consensus 89 aa----------~i~etkeeNlkLrTd~eaL~dq~adLhgD~elfReTeAq~ese~~a~aseNaarneeelqwrrdeanf 158 (389)
T KOG4687|consen 89 AA----------DIEETKEENLKLRTDREALLDQKADLHGDCELFRETEAQFESEKMAGASENAARNEEELQWRRDEANF 158 (389)
T ss_pred HH----------HHHHHHHHhHhhhHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcccccccccchHHHHhhHHHHHH
Confidence 22 1122222233334444455555555555556555444444444332221111111011111111 222
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 006565 442 LEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQS 498 (640)
Q Consensus 442 lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~l~e~nrrleal~~e~~~ 498 (640)
+ .-++.| +..|-++...+...=.+.+++--....-..++--++.++-.
T Consensus 159 i--------c~~EgL-kak~a~LafDLkamideKEELimERDa~kcKa~RLnhELfv 206 (389)
T KOG4687|consen 159 I--------CAHEGL-KAKCAGLAFDLKAMIDEKEELIMERDAMKCKAARLNHELFV 206 (389)
T ss_pred H--------HHHHHH-HHHhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 2 235667 78888777777666555555555555555566555565443
No 456
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=29.83 E-value=3.2e+02 Score=24.59 Aligned_cols=78 Identities=14% Similarity=0.227 Sum_probs=0.0
Q ss_pred hHHHHHHhhhcCchhHHHHHHHHHHhhH---------HhHHHHHHHhhHHhHHHHHhhHHHHHHHHhHHhhhcchHHhHH
Q 006565 81 SERSSLMLKYRSIEDNMKLLKKQLEDSE---------RYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSS 151 (640)
Q Consensus 81 ~~~~~l~~~c~s~~~k~~~~~k~le~~~---------k~~~~~~k~~e~~i~d~kk~~~~~~~~~~~l~~k~~s~ee~~~ 151 (640)
.++..+...-+-.+..++.|...|=+.= .++.-|-.+|+.-|..+..-.+....++..|+.+....-..-.
T Consensus 1 ~l~~~~~~~~~ev~~~ve~vA~eLh~~YssKHE~KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~ 80 (87)
T PF12709_consen 1 DLKKKLEESQKEVEKAVEKVARELHALYSSKHETKVKALKKSYEARWEKKVDELENENKALKRENEQLKKKLDTEREEKQ 80 (87)
T ss_pred CHHhHHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhHHhHH
Q 006565 152 SLSKTVD 158 (640)
Q Consensus 152 ~l~k~le 158 (640)
.|.+.||
T Consensus 81 ~Ll~ll~ 87 (87)
T PF12709_consen 81 ELLKLLE 87 (87)
T ss_pred HHHHhhC
No 457
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=29.71 E-value=6.8e+02 Score=29.00 Aligned_cols=39 Identities=10% Similarity=0.241 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 312 ETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKS 350 (640)
Q Consensus 312 el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~s 350 (640)
-++.|.-++..++.+++.+..+-..|..+.+.|+++-..
T Consensus 60 TlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~ 98 (472)
T TIGR03752 60 TLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQS 98 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 345555555555555555555555555555555433333
No 458
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=29.60 E-value=77 Score=31.55 Aligned_cols=45 Identities=20% Similarity=0.187 Sum_probs=15.7
Q ss_pred HHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 293 KAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDK 341 (640)
Q Consensus 293 ~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei 341 (640)
..+|.+++....+--.|+.+| +..+.+..+.+.+..++..|++|+
T Consensus 3 eD~EsklN~AIERnalLE~EL----dEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 3 EDFESKLNQAIERNALLESEL----DEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCH--------------
T ss_pred HHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555 334455555555555555555555
No 459
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=29.59 E-value=3.7e+02 Score=23.22 Aligned_cols=29 Identities=24% Similarity=0.279 Sum_probs=16.5
Q ss_pred HHHHHHHhhHHHHHhhHHHHHHHHHHHHH
Q 006565 293 KAAESKMRSYEVEISSQKLETKELSEKLE 321 (640)
Q Consensus 293 ~e~e~kIk~~e~ei~~le~el~~L~ekle 321 (640)
.+.+..|..+..+-=.++.+|-+|.+++.
T Consensus 3 rEqe~~i~~L~KENF~LKLrI~fLee~l~ 31 (75)
T PF07989_consen 3 REQEEQIDKLKKENFNLKLRIYFLEERLQ 31 (75)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 34455555555555555666666666655
No 460
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=29.53 E-value=1e+03 Score=28.32 Aligned_cols=81 Identities=21% Similarity=0.336 Sum_probs=55.8
Q ss_pred CCcchhhH-----HHHHHHHHHhhhhccc-----CCchHHHHHHHHHHhh-hchHHHHHHHHHhHHHhHHHHHH--hhhc
Q 006565 25 SDASIDNV-----VKVLDGLISEYETSCH-----GPGKWQKLATFLQQSS-EGPILDLVKRLIDQIGSERSSLM--LKYR 91 (640)
Q Consensus 25 ~~a~~~~~-----~~~l~~~l~~y~~s~~-----G~g~~~k~~~~L~~~l-~~~~~d~~~~~~~~i~~~~~~l~--~~c~ 91 (640)
|+|.=.+| -.++|..|.-||-+|+ |.||.--..+-...+- .|.+---++.+||+|-+|..-+. .+-+
T Consensus 59 pnatQe~Vy~~~a~~Iv~dVL~GYNGTvfaYGqT~sGKTytm~G~~~d~~~~GIipRi~~diF~~Iys~~~n~efhVkVs 138 (607)
T KOG0240|consen 59 PNATQEDVYEFAAKPIVDDVLLGYNGTVFAYGQTGSGKTYTMEGIGHDPEEMGIIPRILNDIFDHIYSMEENLEFHVKVS 138 (607)
T ss_pred CCccHHHHHHHHHHHHHHHHhcccceeEEEecCCCCCcceeecccCCChhhcCcHHHHHHHHHHHHhcCcccceEEEEEE
Confidence 45544444 4688999999999873 4455555666665444 48899999999999999998544 5555
Q ss_pred CchhHHHHHHHHHH
Q 006565 92 SIEDNMKLLKKQLE 105 (640)
Q Consensus 92 s~~~k~~~~~k~le 105 (640)
..+=-|+-+.-.|+
T Consensus 139 y~EIYmEKi~DLL~ 152 (607)
T KOG0240|consen 139 YFEIYMEKIRDLLD 152 (607)
T ss_pred eehhhhhHHHHHhC
Confidence 55555555555555
No 461
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=29.53 E-value=9.1e+02 Score=27.72 Aligned_cols=59 Identities=22% Similarity=0.160 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 360 ERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQK 418 (640)
Q Consensus 360 ~rleeaEee~kea~e~~~~areead~aq~E~~elQr~~~qrlaeIerl~~qIE~lEre~ 418 (640)
..+.+.+.+..++.++-...-.+.-..+-...+-|..+--++++|+-...|.+.|-...
T Consensus 211 ~~l~e~~~~~~~~~e~~~~~~~ey~~~~~q~~~~~del~Sle~q~~~s~~qldkL~ktN 269 (447)
T KOG2751|consen 211 HQLKELEFKAERLNEEEDQYWREYNNFQRQLIEHQDELDSLEAQIEYSQAQLDKLRKTN 269 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhh
Confidence 33333344444444444444444444555666667777777777777777777775543
No 462
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=29.38 E-value=7.4e+02 Score=26.59 Aligned_cols=34 Identities=6% Similarity=0.127 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 006565 361 RCKVAEKEAKKATELADRERAEAAAARKGKSEFE 394 (640)
Q Consensus 361 rleeaEee~kea~e~~~~areead~aq~E~~elQ 394 (640)
.+.++..........+++.+.+++.+++....+|
T Consensus 184 ~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq 217 (267)
T PF10234_consen 184 QLNNLASDEANLEAKIEKKKQELERNQKRLQSLQ 217 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333343333333
No 463
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=29.14 E-value=4.5e+02 Score=24.04 Aligned_cols=50 Identities=22% Similarity=0.268 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHHHHHHHHHHh
Q 006565 461 NEQRASTVKKLEDLLESERRSR-AAANAMAERLSLEVQSAQAKLDEMQQEL 510 (640)
Q Consensus 461 ~eq~~~~l~~le~~le~~re~l-~e~nrrleal~~e~~~lqs~id~Leg~~ 510 (640)
+......+..++.+|+.+...| .++|.+...-+.+...++.+.+.|+..+
T Consensus 10 r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l 60 (100)
T PF06428_consen 10 REEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQL 60 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666677777777777 7788887777777777777777666544
No 464
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=28.92 E-value=4.9e+02 Score=24.45 Aligned_cols=206 Identities=17% Similarity=0.174 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHhHHHHHHhhhcCchhHHHHHHHHHHhhHHhHHHHHHHhhHHhHHHHHhhHHHHHHHHhHHhhhcchH
Q 006565 68 ILDLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLR 147 (640)
Q Consensus 68 ~~d~~~~~~~~i~~~~~~l~~~c~s~~~k~~~~~k~le~~~k~~~~~~k~~e~~i~d~kk~~~~~~~~~~~l~~k~~s~e 147 (640)
|.+-...+++=|...+..|.-.--++ .+..+..+++....+..+.. ....+++.+......+..... .....+.
T Consensus 5 f~~~~~~l~~Wl~~~e~~l~~~~~~~--d~~~~~~~l~~~~~~~~e~~-~~~~~~~~l~~~~~~L~~~~~---~~~~~i~ 78 (213)
T cd00176 5 FLRDADELEAWLSEKEELLSSTDYGD--DLESVEALLKKHEALEAELA-AHEERVEALNELGEQLIEEGH---PDAEEIQ 78 (213)
T ss_pred HHHhHHHHHHHHHHHHHHhcCcccCC--CHHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHhcCC---CChHHHH
Q ss_pred HhHHhhHHhHHhhhhhhHHHHHHHHHHHhHhhHhhHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 148 EKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVA 227 (640)
Q Consensus 148 e~~~~l~k~le~~~~e~~ew~~kYe~~~~~~k~~~~~~AAGIsklK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L 227 (640)
.++..|...-+.....+.++..+.+..+...+...+-+. +..-...++..|....--- --+.+.+.-..++.+
T Consensus 79 ~~~~~l~~~w~~l~~~~~~r~~~L~~~~~~~~~~~~~~~-----l~~wl~~~e~~l~~~~~~~--~~~~~~~~l~~~~~~ 151 (213)
T cd00176 79 ERLEELNQRWEELRELAEERRQRLEEALDLQQFFRDADD-----LEQWLEEKEAALASEDLGK--DLESVEELLKKHKEL 151 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhcCcccCC--CHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHhhhHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 228 VREAKAALEKAAIVQERTSKEMQQREDVLR-EEFSSTLAEKEEEMKEKATKIEHAEQCLTT 287 (640)
Q Consensus 228 ~~QAKkAeek~a~L~er~~~~~q~r~~a~r-ee~~s~le~kE~kie~~k~ei~~aEq~la~ 287 (640)
..........+..+..... .+........ ..+...+.++...|..+...+..-...+..
T Consensus 152 ~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~L~~ 211 (213)
T cd00176 152 EEELEAHEPRLKSLNELAE-ELLEEGHPDADEEIEEKLEELNERWEELLELAEERQKKLEE 211 (213)
T ss_pred HHHHHhchHHHHHHHHHHH-HHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 465
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=28.90 E-value=9.6e+02 Score=27.79 Aligned_cols=245 Identities=11% Similarity=0.028 Sum_probs=131.7
Q ss_pred hHHHHHHHHHHhhhchHHHHHHHHHhHHHhHHHHHHhhhcCchhHHHHHHHHHHhhHHh--HHHHHHHhhHHhHHHHHhh
Q 006565 52 KWQKLATFLQQSSEGPILDLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERY--KSEYLKRYDDAINDKKKLA 129 (640)
Q Consensus 52 ~~~k~~~~L~~~l~~~~~d~~~~~~~~i~~~~~~l~~~c~s~~~k~~~~~k~le~~~k~--~~~~~k~~e~~i~d~kk~~ 129 (640)
+.++|+.=++.|......||.-+-+-.=.-.+=+|. +--.++.+..|+++.+ -.-+|+++..+=.-.+.--
T Consensus 154 ~~~~~a~d~~~s~~~q~~d~~e~~~~kdSQlkvrlq-------e~~~ll~~Rve~le~~Sal~~lq~~L~la~~~~~~~~ 226 (554)
T KOG4677|consen 154 PAKSYAPDLGRSKGEQYRDYSEDWSPKDSQLKVRLQ-------EVRRLLKGRVESLERFSALRSLQDKLQLAEEAVSMHD 226 (554)
T ss_pred chhhcccccccchhhhHhhHhhhcccchhhHHHHHH-------HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 345677777777777777777666522211111111 1224566666776655 2345666655555556666
Q ss_pred HHHHHHHHhHHhhhcchHHhHHhhHHhHHhhhhhhHHHHHHHHHHHhHhhH---------hhH--HHhhhHHHHhhhhHH
Q 006565 130 DDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKA---------MED--QVCSEIEVLKSRSTA 198 (640)
Q Consensus 130 ~~~~~~~~~l~~k~~s~ee~~~~l~k~le~~~~e~~ew~~kYe~~~~~~k~---------~~~--~~AAGIsklK~Rkke 198 (640)
+.|...-+.+-.+.-++|...-.+..++--|+.+-.+.++.+++.=+.-+. +-+ .-+-||..=+.+...
T Consensus 227 e~~i~~~~~f~~r~~~~E~e~rn~~E~~~lA~r~l~~~kKe~de~k~~~~l~~~l~~keeL~~s~~~e~~i~qs~~ksta 306 (554)
T KOG4677|consen 227 ENVITAVLIFLKRTLSKEIEFRNELEVRQLALRHLIHFKKEIDEQKLLLDLFRFLDRKEELALSHYREHLIIQSPDKSTA 306 (554)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhccCCCCcchh
Confidence 777778888889999999999999999999999999999888775443332 111 223333322233222
Q ss_pred HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhHHHHHHHHHH
Q 006565 199 AEARLAAA-------REQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEM 271 (640)
Q Consensus 199 ae~RL~at-------~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a~L~er~~~~~q~r~~a~ree~~s~le~kE~ki 271 (640)
+-.-+..+ .+++..+.+-+.=.++++.-++.|..-. ....+.++. ..-.+ .+.+.+..-.+..+|
T Consensus 307 s~~E~ee~rve~~~s~ed~~~~q~q~~~Lrs~~~d~EAq~r~l---~s~~~~q~~-~~h~~----ka~~~~~~~~l~~~~ 378 (554)
T KOG4677|consen 307 SRKEFEETRVELPFSAEDSAHIQDQYTLLRSQIIDIEAQDRHL---ESAGQTQIF-RKHPR----KASILNMPLVLTLFY 378 (554)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHhHHHHH-HhhhH----hhhhhhchHHHHHHH
Confidence 23333333 3444444444444444444333332211 111222221 22222 333333344555566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHH
Q 006565 272 KEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETK 314 (640)
Q Consensus 272 e~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~ 314 (640)
+-.+.++...++.+.... ..+.++|...+.++..+..+++
T Consensus 379 ec~~~e~e~~~~~~~r~~---~~~qski~dk~~el~kl~~~l~ 418 (554)
T KOG4677|consen 379 ECFYHETEAEGTFSSRVN---LKKQSKIPDKQYELTKLAARLK 418 (554)
T ss_pred HHHHHHHHHhhhhhhhcc---chhhccCcchHHHHHHHHHHHH
Confidence 666666655555544332 4455666666666665555443
No 466
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=28.87 E-value=9.2e+02 Score=27.55 Aligned_cols=28 Identities=11% Similarity=0.122 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 006565 482 RAAANAMAERLSLEVQSAQAKLDEMQQE 509 (640)
Q Consensus 482 l~e~nrrleal~~e~~~lqs~id~Leg~ 509 (640)
+.-...-+.+|.-.+..+.+-+..++++
T Consensus 294 L~~QedL~~DL~eDl~k~~etf~lveq~ 321 (424)
T PF03915_consen 294 LKLQEDLLSDLKEDLKKASETFALVEQC 321 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444555555555555555555544
No 467
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=28.21 E-value=1.8e+02 Score=24.00 Aligned_cols=31 Identities=26% Similarity=0.530 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhh
Q 006565 398 MERMAVIERVQRQIESLERQKTDLTNEVNRI 428 (640)
Q Consensus 398 ~qrlaeIerl~~qIE~lEre~e~Le~E~~~l 428 (640)
.+...+|..++.+++.+..+.+.|..++..+
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555666666655555555555
No 468
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=27.71 E-value=3.5e+02 Score=23.68 Aligned_cols=32 Identities=22% Similarity=0.382 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 006565 394 ENLAMERMAVIERVQRQIESLERQKTDLTNEV 425 (640)
Q Consensus 394 Qr~~~qrlaeIerl~~qIE~lEre~e~Le~E~ 425 (640)
++-+..+++.|..+..++.+++++++++....
T Consensus 3 ~NILl~Ir~dIk~vd~KVdaLq~~V~~l~~~~ 34 (75)
T PF05531_consen 3 QNILLVIRQDIKAVDDKVDALQTQVDDLESNL 34 (75)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44456667777778778888877776665444
No 469
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=27.45 E-value=8e+02 Score=27.15 Aligned_cols=25 Identities=20% Similarity=0.381 Sum_probs=14.8
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHh
Q 006565 486 NAMAERLSLEVQSAQAKLDEMQQEL 510 (640)
Q Consensus 486 nrrleal~~e~~~lqs~id~Leg~~ 510 (640)
...++.+...+...+..+..+++++
T Consensus 67 ~~~i~~L~~~Ik~r~~~l~DmEa~L 91 (330)
T PF07851_consen 67 RELIEKLEEDIKERRCQLFDMEAFL 91 (330)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhhC
Confidence 4455555555666666666666664
No 470
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=27.43 E-value=5.8e+02 Score=26.52 Aligned_cols=32 Identities=16% Similarity=0.303 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhc
Q 006565 398 MERMAVIERVQRQIESLERQKTDLTNEVNRIR 429 (640)
Q Consensus 398 ~qrlaeIerl~~qIE~lEre~e~Le~E~~~l~ 429 (640)
++....-++++..+-.++-....|+..+..+.
T Consensus 181 Lqae~ek~~~~~~~k~le~~k~~Le~~ia~~k 212 (259)
T KOG4001|consen 181 LQAENEKTRATTEWKVLEDKKKELELKIAQLK 212 (259)
T ss_pred HHHhhhhhHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 44444444454444444444444444444444
No 471
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=27.29 E-value=1.8e+02 Score=30.60 Aligned_cols=19 Identities=26% Similarity=0.429 Sum_probs=8.3
Q ss_pred HhhHHHHHHHHHHHHHHHH
Q 006565 491 RLSLEVQSAQAKLDEMQQE 509 (640)
Q Consensus 491 al~~e~~~lqs~id~Leg~ 509 (640)
.++.++..++.+++.|+..
T Consensus 225 eLq~r~~~l~~~L~~L~~e 243 (289)
T COG4985 225 ELQKRLAQLQTELDALRAE 243 (289)
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 3334444444444444443
No 472
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=27.00 E-value=3.8e+02 Score=25.51 Aligned_cols=24 Identities=21% Similarity=0.207 Sum_probs=0.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHh
Q 006565 487 AMAERLSLEVQSAQAKLDEMQQEL 510 (640)
Q Consensus 487 rrleal~~e~~~lqs~id~Leg~~ 510 (640)
..-+.+..+++.+...+....+|.
T Consensus 107 ~eEe~L~~~le~l~~~l~~p~~~~ 130 (141)
T PF13874_consen 107 PEEEELRKRLEALEAQLNAPAQLK 130 (141)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHHHcCchhHH
Confidence 334445555555555555554443
No 473
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=26.80 E-value=1.3e+03 Score=28.64 Aligned_cols=252 Identities=15% Similarity=0.201 Sum_probs=0.0
Q ss_pred HhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 006565 249 MQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQ 328 (640)
Q Consensus 249 ~q~r~~a~ree~~s~le~kE~kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eie 328 (640)
+++| |..+..++.-.. +|=..+.++..--..+-.+..++.++.+.-+.++.+-......+.....-+ .-..+|+
T Consensus 278 ANeR----R~~~~~al~~R~-e~~~sr~~~~~~q~r~v~~srE~ael~~~E~~LE~D~Q~A~DhLnLV~~Al-R~QEKI~ 351 (1480)
T COG3096 278 ANER----RVHLDQALEFRR-ELYTSRQQLAAEQYRHVDMSRELAELNGAEGDLEADYQAASDHLNLVQTAL-RQQEKIE 351 (1480)
T ss_pred hhhh----hccHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhHHHHhhHHHHHHHHH-HHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH--HHHHHHH--
Q 006565 329 SFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLA--MERMAVI-- 404 (640)
Q Consensus 329 s~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~areead~aq~E~~elQr~~--~qrlaeI-- 404 (640)
.|...+..|...+.+-..=++...++.++...+.+.++.+++..+.....++..+|..|.....-|+-+ .++-..+
T Consensus 352 RYQ~Dl~Elt~RLEEQ~~VVeeA~e~~~e~e~r~e~~E~EvD~lksQLADYQQALD~QQTRAlQYQQAi~ALekAk~Lc~ 431 (1480)
T COG3096 352 RYQADLEELTIRLEEQNEVVEEANERQEENEARAEAAELEVDELKSQLADYQQALDVQQTRAIQYQQAIAALERAKELCH 431 (1480)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcC
Q ss_pred ------HHHHHHHHHHHHHHHHhHHHHhhhcHHH----------------------------------------------
Q 006565 405 ------ERVQRQIESLERQKTDLTNEVNRIRESE---------------------------------------------- 432 (640)
Q Consensus 405 ------erl~~qIE~lEre~e~Le~E~~~l~~sE---------------------------------------------- 432 (640)
...+.-.+...-.-+.++..+-.|. .-
T Consensus 432 l~dLt~~~~e~~~~~f~A~~e~~Te~lL~Le-~kms~s~AA~sQF~~AyqLV~~iaGE~~RS~A~~~A~~llR~~p~q~~ 510 (1480)
T COG3096 432 LPDLTADSAEEWLETFQAKEEEATEKLLSLE-QKMSMAQAAHSQFEQAYQLVVAIAGELARSEAWDVARELLREGPDQRH 510 (1480)
T ss_pred ccccchhhHHHHHHHHHHhHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHHhCccchhhHHHHHHHHHHhChhhHH
Q ss_pred ----HHHHHH-HHHHHHHHHHHHHHHHHHHHhhH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 006565 433 ----LEALSK-VALLEARVEEREKEIESLLESNN---------EQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQS 498 (640)
Q Consensus 433 ----l~al~k-v~~lE~~vee~e~eiE~L~~~~~---------eq~~~~l~~le~~le~~re~l~e~nrrleal~~e~~~ 498 (640)
...+.- +.+||.+...++.-..-| ...| +.+..--..++..|+++...+......-.+++-+.+-
T Consensus 511 ~aq~~~~lr~~l~eLEqr~~qQqsa~~Ll-~~f~kr~~~~l~ae~lE~~~~e~eal~E~ls~~~s~~~EqR~~lRq~~e~ 589 (1480)
T COG3096 511 LAEQVQPLRMRLSELEQRLRQQQSAERLL-ADFCKRQGKNLDAEELEALHQELEALIESLSDSVSNAREQRMALRQEQEQ 589 (1480)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHH
Q 006565 499 AQAKLDEMQQ 508 (640)
Q Consensus 499 lqs~id~Leg 508 (640)
++..+..+..
T Consensus 590 L~~~~~~~~~ 599 (1480)
T COG3096 590 LQSRIQSLMQ 599 (1480)
T ss_pred HHHHHHHHHh
No 474
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=26.60 E-value=3.8e+02 Score=22.42 Aligned_cols=73 Identities=12% Similarity=0.214 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 271 MKEKATKIEHAEQCLT-----TLRLELKAAESKMRSYEVEISSQKLETKELS-EKLEAVNAKAQSFEREARIMEQDKVY 343 (640)
Q Consensus 271 ie~~k~ei~~aEq~la-----~~q~eL~e~e~kIk~~e~ei~~le~el~~L~-ekle~~~~eies~e~el~~L~~ei~~ 343 (640)
+..+...|......+. .....+..++..|.....-+...+.+++.+. .....+..++.+|..++..|+.++..
T Consensus 1 f~~l~~~i~~~l~~~~~~~~~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~l~~ 79 (79)
T PF05008_consen 1 FQALTAEIKSKLERIKNLSGEQRKSLIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKELKK 79 (79)
T ss_dssp HHHHHHHHHHHHHHGGGS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 475
>PF08198 Thymopoietin: Thymopoietin protein; InterPro: IPR013146 This entry included thymopoietins; short proteins of 49 amino acid isolated from bovine spleen cells []. Thymopoietins (TMPOs) are a group of ubiquitously expressed nuclear proteins. They are suggested to play an important role in nuclear envelope organisation and cell cycle control []. Thymopoietins are characterised by LEM (LAP2, emerin, MAN1) domain, this is a globular module of approximately 40 amino acids, which is mostly found in the nucleoplasmic portions of metazoan inner nuclear membrane proteins. The LEM domain has been shown to mediate binding to BAF (barrier-to-autointegration factor) and BAF-DNA complexes. BAF dimers bind to double-stranded DNA non-specifically and thereby bridge DNA molecules to form a large, discrete nucleoprotein complex [, ]. The resolution of the solution structure of the LEM domain reveals that it is composed of a three-residue N-terminal helical turn and two large parallel alpha helices interacting through a set of conserved hydrophobic amino acids. The two helices, which are connected by a long loop are oriented at an angle of ~45 degree []. ; PDB: 1GJJ_A 1H9E_A.
Probab=26.59 E-value=12 Score=29.83 Aligned_cols=44 Identities=32% Similarity=0.411 Sum_probs=0.0
Q ss_pred cchhHhhHHHHHHHHHhcCchhhhhhccCCChHHHHHHHHHhhccCC
Q 006565 594 EDYTKFTVQKLKQELTKHNFGAELLQLRNPNKKEILALYEKCILQKS 640 (640)
Q Consensus 594 ~~y~k~t~~kl~~el~~~~~g~~l~~l~~~~k~~i~aly~~~~~~~~ 640 (640)
+|=.-||..+||-+|+.||.. |-=.++.|.=-+.||-+|+-.++
T Consensus 5 edPs~lTK~~LKseL~a~nV~---LP~g~~~KdvYVqLYlkhl~~~n 48 (49)
T PF08198_consen 5 EDPSVLTKDRLKSELLAHNVA---LPSGEQRKDVYVQLYLKHLTAQN 48 (49)
T ss_dssp SSBCCC-CCHHHHHHHHTT-------SSS-CCCHHHHCCCCCCTTTC
T ss_pred ccHHHHhHHHHHHHHHHcCCC---CCCCCcccchhHHHHHHHHHhcc
No 476
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=26.47 E-value=1e+03 Score=27.40 Aligned_cols=137 Identities=21% Similarity=0.227 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 269 EEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETK---ELSEKLEAVNAKAQSFEREARIMEQDKVYLE 345 (640)
Q Consensus 269 ~kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~---~L~ekle~~~~eies~e~el~~L~~ei~~L~ 345 (640)
+++-..-..+..+|+.+..+|++|+.+..+-++...++-.++..+. .|.+-.+.+.-+... +++..+...+...+
T Consensus 245 ~km~kdle~Lq~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea~rl~elreg~e~e~~r--kelE~lR~~L~kAE 322 (575)
T KOG4403|consen 245 NKMMKDLEGLQRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEAPRLSELREGVENETSR--KELEQLRVALEKAE 322 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhhhhcchhHHHHH--HHHHHHHHHHHHHH
Q ss_pred HHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHH
Q 006565 346 QKYKSEF------------------------ERFEEVQERCKVAEKEAKKATE------------------LADRERAEA 383 (640)
Q Consensus 346 ekl~se~------------------------er~ee~~~rleeaEee~kea~e------------------~~~~areea 383 (640)
..++.-- .+-....+.+.+|.+.++.+.+ .+|..--++
T Consensus 323 kele~nS~wsaP~aLQ~wLq~T~E~E~q~~~kkrqnaekql~~Ake~~eklkKKrssv~gtl~vahgsslDdVD~kIlea 402 (575)
T KOG4403|consen 323 KELEANSSWSAPLALQKWLQLTHEVEVQYYNKKRQNAEKQLKEAKEMAEKLKKKRSSVFGTLHVAHGSSLDDVDHKILEA 402 (575)
T ss_pred HHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhcchheeeeeccccchhhHHHHHHHH
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHH
Q 006565 384 AAARKGKSEFENLAMERMAVIERV 407 (640)
Q Consensus 384 d~aq~E~~elQr~~~qrlaeIerl 407 (640)
-.|=.++-.+-++...|=.+|+.+
T Consensus 403 k~al~evtt~lrErl~RWqQIE~l 426 (575)
T KOG4403|consen 403 KSALSEVTTLLRERLHRWQQIESL 426 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
No 477
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=26.25 E-value=8.3e+02 Score=26.97 Aligned_cols=140 Identities=15% Similarity=0.248 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 006565 307 SSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEA--- 383 (640)
Q Consensus 307 ~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~areea--- 383 (640)
......++........++.+++...-++..|.+|+.||...+. .|..|.+....+.=.-.+ +....+-..+
T Consensus 8 R~~~~~~~~~k~~t~e~k~~vD~~~LqLqNl~YE~~hL~kEI~-~C~~F~s~~~~i~Lv~~e-----EF~~~ap~~~~~~ 81 (355)
T PF09766_consen 8 RAAQFRIKKAKDETAEAKQEVDALHLQLQNLLYEKSHLQKEIK-KCLDFKSKYEDIELVPVE-----EFYAKAPEEISDP 81 (355)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHH-HHhccCCCCCCCcCccHH-----HHHHhChhhcccc
Q ss_pred HHHHhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 006565 384 AAARKGKSE--FENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSK-VALLEARVEEREKEIE 454 (640)
Q Consensus 384 d~aq~E~~e--lQr~~~qrlaeIerl~~qIE~lEre~e~Le~E~~~l~~sEl~al~k-v~~lE~~vee~e~eiE 454 (640)
+....+-.+ +.|+-.++... .++..+...+++++..+..++...+ .-++.|.. +..+..-..-++.-+.
T Consensus 82 ~~~~~~~H~lml~RL~~EL~~R-k~L~~~~~el~~~k~~l~~~~~~k~-~~L~~l~~~L~~l~~a~~plq~~l~ 153 (355)
T PF09766_consen 82 ELTEDDEHQLMLARLEFELEQR-KRLEEQLKELEQRKKKLQQENKKKK-KFLDSLPPQLKSLKKAAKPLQEYLG 153 (355)
T ss_pred ccCCCChHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHhC
No 478
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=25.86 E-value=5.2e+02 Score=24.61 Aligned_cols=60 Identities=23% Similarity=0.287 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHhhhcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 006565 414 LERQKTDLTNEVNRIRESELEALSK-VALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSR 482 (640)
Q Consensus 414 lEre~e~Le~E~~~l~~sEl~al~k-v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~l 482 (640)
|+.+--+++++...+. -|...+.- ++.|+.....++.-..+| ...|.-||-.|..+|...
T Consensus 9 LQ~Ew~r~ErdR~~We-iERaEmkarIa~LEGE~r~~e~l~~dL--------~rrIkMLE~aLkqER~k~ 69 (134)
T PF08232_consen 9 LQTEWHRFERDRNQWE-IERAEMKARIAFLEGERRGQENLKKDL--------KRRIKMLEYALKQERAKY 69 (134)
T ss_pred HHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHh
No 479
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=25.84 E-value=6.5e+02 Score=24.78 Aligned_cols=128 Identities=16% Similarity=0.214 Sum_probs=0.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhH
Q 006565 384 AAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSK--VALLEARVEEREKEIESLLESNN 461 (640)
Q Consensus 384 d~aq~E~~elQr~~~qrlaeIerl~~qIE~lEre~e~Le~E~~~l~~sEl~al~k--v~~lE~~vee~e~eiE~L~~~~~ 461 (640)
.+|..-...+......-...+..--.....++...-.+..+...++ +|+..+.+ +..+....+.++.+++.| .+..
T Consensus 19 ~QAe~i~~~l~~~l~~~~~~~~~~~vtk~d~e~~~~~~~a~~~eLr-~el~~~~k~~~~~lr~~~e~L~~eie~l-~~~L 96 (177)
T PF07798_consen 19 EQAEAIMKALREVLNDSLEKVAQDLVTKSDLENQEYLFKAAIAELR-SELQNSRKSEFAELRSENEKLQREIEKL-RQEL 96 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q ss_pred HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhcc
Q 006565 462 EQRASTVKK-----LEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQELTKARLN 516 (640)
Q Consensus 462 eq~~~~l~~-----le~~le~~re~l~e~nrrleal~~e~~~lqs~id~Leg~~~~~~~~ 516 (640)
..--.++.. +..+....++.....+.++.++.+ -+...|..+....++++..
T Consensus 97 ~~ei~~l~a~~klD~n~eK~~~r~e~~~~~~ki~e~~~---ki~~ei~~lr~~iE~~K~~ 153 (177)
T PF07798_consen 97 REEINKLRAEVKLDLNLEKGRIREEQAKQELKIQELNN---KIDTEIANLRTEIESLKWD 153 (177)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
No 480
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=25.78 E-value=5.5e+02 Score=23.96 Aligned_cols=87 Identities=15% Similarity=0.223 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcHHH------HHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 006565 393 FENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESE------LEALSK-VALLEARVEEREKEIESLLESNNEQRA 465 (640)
Q Consensus 393 lQr~~~qrlaeIerl~~qIE~lEre~e~Le~E~~~l~~sE------l~al~k-v~~lE~~vee~e~eiE~L~~~~~eq~~ 465 (640)
.......+..+|+-.+.+ .+..++..|+.-+..++ .. +..... |...+..|.+++.++... ...-..
T Consensus 22 C~~K~~~Ie~qI~~Ak~~--gN~~rv~GLe~AL~~v~-~~Ctd~~l~~e~q~ki~~~~~kV~ere~eL~eA-~~~G~~-- 95 (115)
T PF06476_consen 22 CEAKEQAIEKQIEYAKAH--GNQHRVAGLEKALEEVK-AHCTDEGLKAERQQKIAEKQQKVAEREAELKEA-QAKGDS-- 95 (115)
T ss_pred HHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHH-hhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCH--
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 006565 466 STVKKLEDLLESERRSRAAA 485 (640)
Q Consensus 466 ~~l~~le~~le~~re~l~e~ 485 (640)
..|...+..|.+-+..|.++
T Consensus 96 ~KI~K~~~KL~ea~~eL~~A 115 (115)
T PF06476_consen 96 DKIAKRQKKLAEAKAELKEA 115 (115)
T ss_pred HHHHHHHHHHHHHHHHHhhC
No 481
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.71 E-value=1.2e+03 Score=27.81 Aligned_cols=160 Identities=10% Similarity=0.124 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 254 DVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFERE 333 (640)
Q Consensus 254 ~a~ree~~s~le~kE~kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~e 333 (640)
|-.+.+|+.++-.+..+++...+++..++++...+.+.-.-+..++......-..+.++++.| .....+.+-.+..-
T Consensus 580 dlV~~e~qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L---~~~~~~~lp~l~~A 656 (741)
T KOG4460|consen 580 DLVKEEIQRHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKL---LHSFHSELPVLSDA 656 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---HhcccccCCcchhH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 334 ARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIES 413 (640)
Q Consensus 334 l~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~areead~aq~E~~elQr~~~qrlaeIerl~~qIE~ 413 (640)
=...++|+..+-..+.....-++++..+++. +..-.+.-..+..+......-.....+|.-+.++--.|.+.=.++-+
T Consensus 657 ErdFk~Elq~~~~~~~~L~~~iET~~~~~~K--Q~~H~~~v~~al~K~~Y~l~~~Q~~~iqsiL~~L~~~i~~~~k~VK~ 734 (741)
T KOG4460|consen 657 ERDFKKELQLIPDQLRHLGNAIETVTMKKDK--QQQHMEKVLSALPKPTYILSAYQRKCIQSILKELGEHIREMVKQVKD 734 (741)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhccCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHH
Q 006565 414 LERQK 418 (640)
Q Consensus 414 lEre~ 418 (640)
.+..+
T Consensus 735 i~~~v 739 (741)
T KOG4460|consen 735 IRNHV 739 (741)
T ss_pred HHHhh
No 482
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=25.65 E-value=3.9e+02 Score=28.19 Aligned_cols=60 Identities=13% Similarity=0.202 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 006565 439 VALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSA 499 (640)
Q Consensus 439 v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~l~e~nrrleal~~e~~~l 499 (640)
++.++..+..+..-+-+| +..++.++.+|..|.+.++....++.+..+|-.++-..++..
T Consensus 42 ~~~le~~~~~~~~~~~~l-~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r 101 (263)
T PRK10803 42 VTQLERISNAHSQLLTQL-QQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSL 101 (263)
T ss_pred HHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
No 483
>smart00338 BRLZ basic region leucin zipper.
Probab=25.65 E-value=2.4e+02 Score=23.01 Aligned_cols=38 Identities=32% Similarity=0.483 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 006565 444 ARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSR 482 (640)
Q Consensus 444 ~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~l 482 (640)
..+.+++.++..| ...+..+..++..+..++..++..+
T Consensus 26 ~~~~~Le~~~~~L-~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 26 AEIEELERKVEQL-EAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHh
No 484
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=25.55 E-value=2.6e+02 Score=32.30 Aligned_cols=56 Identities=11% Similarity=0.115 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHH
Q 006565 261 SSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKEL 316 (640)
Q Consensus 261 ~s~le~kE~kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L 316 (640)
.++++.-+.+..++..++....+++..+.......+.+|+.+++++..|+.++..+
T Consensus 68 qSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~ 123 (475)
T PRK13729 68 QHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKAL 123 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhh
No 485
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=25.55 E-value=6e+02 Score=24.79 Aligned_cols=72 Identities=11% Similarity=0.212 Sum_probs=0.0
Q ss_pred HhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 299 MRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQ---DKVYLEQKYKSEFERFEEVQERCKVAEKEAK 370 (640)
Q Consensus 299 Ik~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~---ei~~L~ekl~se~er~ee~~~rleeaEee~k 370 (640)
+..+-.++...+.+...+...+..+++.+....+.+..|+. ....|..++......+......++.--...+
T Consensus 8 m~~~gk~i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~ 82 (155)
T PF06810_consen 8 MAENGKDIEAPKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLAQMK 82 (155)
T ss_pred HHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 486
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=25.36 E-value=3.4e+02 Score=23.95 Aligned_cols=47 Identities=34% Similarity=0.404 Sum_probs=0.0
Q ss_pred HHHhhhcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 006565 423 NEVNRIRESELEALSK-VALLEARVEEREKEIESLLESNNEQRASTVKKL 471 (640)
Q Consensus 423 ~E~~~l~~sEl~al~k-v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~l 471 (640)
.+.++|. .++.++.. +..|-.+|+..+.+.+.| ..+++-++.=|.+|
T Consensus 16 e~k~~Li-~ei~~LQ~sL~~L~~Rve~Vk~E~~kL-~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 16 EEKEELI-QEILELQDSLEALSDRVEEVKEENEKL-ESENEYLQQYIGNL 63 (80)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
No 487
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=25.31 E-value=1.3e+03 Score=28.15 Aligned_cols=476 Identities=17% Similarity=0.195 Sum_probs=0.0
Q ss_pred HHHhcCCCCcchhhHHHHHHHH----------HHhhhhcccCCchHH-HHHHHHHHhhhchHHHHHHHHHhHHHhHHHHH
Q 006565 18 LRAACHSSDASIDNVVKVLDGL----------ISEYETSCHGPGKWQ-KLATFLQQSSEGPILDLVKRLIDQIGSERSSL 86 (640)
Q Consensus 18 l~~ac~~~~a~~~~~~~~l~~~----------l~~y~~s~~G~g~~~-k~~~~L~~~l~~~~~d~~~~~~~~i~~~~~~l 86 (640)
||.+---....++..+.=|+.+ ..+..++.-|..-|| .|+-=.|+-| +..-+-=-..+.+|....
T Consensus 85 lre~sl~qkmrLe~qa~Ele~l~~ae~agraEae~Lraala~ae~~R~~lEE~~q~EL----ee~q~~Hqeql~~Lt~aH 160 (739)
T PF07111_consen 85 LRETSLQQKMRLEAQAEELEALARAEKAGRAEAEELRAALAGAEVVRKNLEEGSQREL----EEAQRLHQEQLSSLTQAH 160 (739)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q ss_pred HhhhcCchhHHHHHHHHHHhhHHhHHHHHHHhhHHhHHHHHhhHHHHHHHHhHHhhhcchHHhHHhhHHhHHhhhhhhHH
Q 006565 87 MLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISD 166 (640)
Q Consensus 87 ~~~c~s~~~k~~~~~k~le~~~k~~~~~~k~~e~~i~d~kk~~~~~~~~~~~l~~k~~s~ee~~~~l~k~le~~~~e~~e 166 (640)
..+-.+...|+.-|.+.|.+++......-+-+..+-...--|-++.+--..+|......++ .+-.-.-.+......+..
T Consensus 161 q~~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~q~tlv~-~LR~YvGeq~p~~~~~~~ 239 (739)
T PF07111_consen 161 QEALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEELEAQVTLVE-QLRKYVGEQVPPEVHSQA 239 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHhhhCCcccccHH
Q ss_pred HHH---HHHHHHhHhhHhhHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHH
Q 006565 167 WKR---KYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQ---------------EEVEEWKRKYGVAV 228 (640)
Q Consensus 167 w~~---kYe~~~~~~k~~~~~~AAGIsklK~Rkkeae~RL~at~enL~RVk---------------Del~Ewkrky~~L~ 228 (640)
|-. .+-..|...+.+-+.+-+-+--+..|...+-.=|.=-.+.|.+-- -.+.=|+.|+=.|-
T Consensus 240 we~Er~~L~~tVq~L~edR~~L~~T~ELLqVRvqSLt~IL~LQEeEL~~Kvqp~d~Le~e~~~K~q~LL~~WREKVFaLm 319 (739)
T PF07111_consen 240 WEPEREELLETVQHLQEDRDALQATAELLQVRVQSLTDILTLQEEELCRKVQPSDPLEPEFSRKCQQLLSRWREKVFALM 319 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH----HHHHHHHHhhhHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 006565 229 REAKAAL----EKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEV 304 (640)
Q Consensus 229 ~QAKkAe----ek~a~L~er~~~~~q~r~~a~ree~~s~le~kE~kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ 304 (640)
-|-|.-+ +....+..++. .++.. ......+-+-+...++...+++.--.-....++.+|.-.......+..
T Consensus 320 VQLkaQeleh~~~~~qL~~qVA-sLQee----v~sq~qEqaiLq~SLqDK~AElevERv~sktLQ~ELsrAqea~~~lqq 394 (739)
T PF07111_consen 320 VQLKAQELEHRDSVKQLRGQVA-SLQEE----VASQQQEQAILQHSLQDKAAELEVERVGSKTLQAELSRAQEARRRLQQ 394 (739)
T ss_pred HHhhHHHHHhhhHHHHHHHHHH-HHHHH----HHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------------
Q 006565 305 EISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEF-------------------------------- 352 (640)
Q Consensus 305 ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~-------------------------------- 352 (640)
.....+..++.+.+-..+...-+.+-...+...-..+..|..++....
T Consensus 395 q~~~aee~Lk~v~eav~S~q~~L~s~ma~ve~a~aRL~sL~~RlSyAvrrv~tiqGL~Ark~Alaqlrqe~~~~~pp~~~ 474 (739)
T PF07111_consen 395 QTASAEEQLKLVSEAVSSSQQWLESQMAKVEQALARLPSLSNRLSYAVRRVHTIQGLMARKLALAQLRQEQCPPSPPSVT 474 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccchhHHHHHHHHHHHHHHhccCCCCCCchh
Q ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 353 --------------ERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQK 418 (640)
Q Consensus 353 --------------er~ee~~~rleeaEee~kea~e~~~~areead~aq~E~~elQr~~~qrlaeIerl~~qIE~lEre~ 418 (640)
.-..+++--..-++.++.++++ ...++..........++....+....+..+..+.+...+-.
T Consensus 475 dL~~ELqqLReERdRl~aeLqlSa~liqqeV~~ArE---qgeaE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~l 551 (739)
T PF07111_consen 475 DLSLELQQLREERDRLDAELQLSARLIQQEVGRARE---QGEAERQQLSEVAQQLEQELQEKQESLAELEEQLEAARKSL 551 (739)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q ss_pred HHhHHHHhhhcHHH--------HHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 419 TDLTNEVNRIRESE--------LEALSK-VALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMA 489 (640)
Q Consensus 419 e~Le~E~~~l~~sE--------l~al~k-v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~l~e~nrrl 489 (640)
.-...+...++ .| -.++.. |++++.+.-+.=.++| ..=|+-+.+--+..-.+....|.+--+..+--
T Consensus 552 qes~eea~~lR-~EL~~QQ~~y~~alqekvsevEsrl~E~L~~~E---~rLNeARREHtKaVVsLRQ~qrqa~reKer~~ 627 (739)
T PF07111_consen 552 QESTEEAAELR-RELTQQQEVYERALQEKVSEVESRLREQLSEME---KRLNEARREHTKAVVSLRQIQRQAAREKERNQ 627 (739)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhH
Q ss_pred HHhhHHHHHHHHHHHHHHHHh
Q 006565 490 ERLSLEVQSAQAKLDEMQQEL 510 (640)
Q Consensus 490 eal~~e~~~lqs~id~Leg~~ 510 (640)
+...++-.-.+....-|...+
T Consensus 628 E~~~lq~e~~~~e~~rl~~rl 648 (739)
T PF07111_consen 628 ELRRLQEEARKEEGQRLTQRL 648 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
No 488
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=25.28 E-value=8.8e+02 Score=28.82 Aligned_cols=90 Identities=13% Similarity=0.214 Sum_probs=0.0
Q ss_pred HhHHHHhhhcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 006565 420 DLTNEVNRIRESELEALSK-VALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQS 498 (640)
Q Consensus 420 ~Le~E~~~l~~sEl~al~k-v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~l~e~nrrleal~~e~~~ 498 (640)
+|-.++++--...-..+-+ +..+-.+++.....++.| .+........+..-...-.....+.+.++.+.+.
T Consensus 20 ~LR~~iE~~~l~~~~~~L~~f~~v~~~l~~~~~~v~~l--------~~~~~~~~~~l~~~~~~t~~ll~~~~~L~~~~~~ 91 (618)
T PF06419_consen 20 NLRSDIEKRLLKINQEFLKEFSPVNRQLKRLQSDVDKL--------NSSCDQMQDRLSAAKSETSDLLEEASELREQKEE 91 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhhhhhccc
Q 006565 499 AQAKLDEMQQELTKARLNE 517 (640)
Q Consensus 499 lqs~id~Leg~~~~~~~~e 517 (640)
++.+-..+..|...+.|++
T Consensus 92 ~~~k~~ll~~f~~~f~Ls~ 110 (618)
T PF06419_consen 92 LELKKKLLDAFLERFTLSE 110 (618)
T ss_pred HHHHHHHHHHHHHhCCCCH
No 489
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=25.28 E-value=5.9e+02 Score=25.80 Aligned_cols=64 Identities=20% Similarity=0.233 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q 006565 311 LETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEF--ERFEEVQERCKVAEKEAKKATE 374 (640)
Q Consensus 311 ~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~--er~ee~~~rleeaEee~kea~e 374 (640)
.++..|..+...+..+.+++....+...-+|..|..-+.... +...++.+.+.+..++++.++.
T Consensus 79 eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~ 144 (201)
T KOG4603|consen 79 EELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKA 144 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
No 490
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=25.24 E-value=7.1e+02 Score=25.02 Aligned_cols=106 Identities=17% Similarity=0.231 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 006565 395 NLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVALLEARVEEREKEIESLLESNNEQRASTVKKLEDL 474 (640)
Q Consensus 395 r~~~qrlaeIerl~~qIE~lEre~e~Le~E~~~l~~sEl~al~kv~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~ 474 (640)
.....+...++.+...++.++..+..+...+.... ..-..-..-+.+..+++++..++..| ..++. ..
T Consensus 62 ~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~-~~r~~~~eR~~~l~~l~~l~~~~~~l--------~~el~---~~ 129 (188)
T PF03962_consen 62 QAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAK-KGREESEEREELLEELEELKKELKEL--------KKELE---KY 129 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccccHHHHHHHHHHHHHHHHHHHH--------HHHHH---HH
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhh
Q 006565 475 LESERRSRAAANAMAERLSLEVQSAQAKLDEMQQELTK 512 (640)
Q Consensus 475 le~~re~l~e~nrrleal~~e~~~lqs~id~Leg~~~~ 512 (640)
-..--+.+....+.+.......+.--.-|..|.+|..+
T Consensus 130 ~~~Dp~~i~~~~~~~~~~~~~anrwTDNI~~l~~~~~~ 167 (188)
T PF03962_consen 130 SENDPEKIEKLKEEIKIAKEAANRWTDNIFSLKSYLKK 167 (188)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
No 491
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=25.18 E-value=3.2e+02 Score=22.27 Aligned_cols=40 Identities=28% Similarity=0.425 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 443 EARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRA 483 (640)
Q Consensus 443 E~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~l~ 483 (640)
...+++++..+..| ...+..+..++..|..++..+.....
T Consensus 25 k~~~~~Le~~~~~L-~~en~~L~~~~~~L~~~~~~L~~e~~ 64 (64)
T PF00170_consen 25 KQYIEELEEKVEEL-ESENEELKKELEQLKKEIQSLKSENH 64 (64)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcc
No 492
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=25.11 E-value=9.4e+02 Score=26.40 Aligned_cols=138 Identities=14% Similarity=0.235 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHhHhhHhhHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Q 006565 160 LKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKR----KYGVAVREAKAAL 235 (640)
Q Consensus 160 ~~~e~~ew~~kYe~~~~~~k~~~~~~AAGIsklK~Rkkeae~RL~at~enL~RVkDel~Ewkr----ky~~L~~QAKkAe 235 (640)
.++.+-||+---+|.-+ .-.||- +....+..-|+-......++-+-|.--++ ++..|..+-++|.
T Consensus 218 ~k~DakDWR~H~~QM~s--------~~~nIe---~~~~~~~~~Ldklh~eit~~LEkI~SREK~lNnqL~~l~q~fr~a~ 286 (384)
T KOG0972|consen 218 LKQDAKDWRLHLEQMNS--------MHKNIE---QKVGNVGPYLDKLHKEITKALEKIASREKSLNNQLASLMQKFRRAT 286 (384)
T ss_pred hccccHHHHHHHHHHHH--------HHHHHH---HhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhhHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhhHHHHHhhH
Q 006565 236 EKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTL------RLELKAAESKMRSYEVEISSQ 309 (640)
Q Consensus 236 ek~a~L~er~~~~~q~r~~a~ree~~s~le~kE~kie~~k~ei~~aEq~la~~------q~eL~e~e~kIk~~e~ei~~l 309 (640)
..++.++++.+ +.+.- ...-...+.+.-.+++.++.+++..-+..+.= +..+..+....-...-.|..+
T Consensus 287 ~~lse~~e~y~-q~~~g----v~~rT~~L~eVm~e~E~~KqemEe~G~~msDGaplvkIkqavsKLk~et~~mnv~igv~ 361 (384)
T KOG0972|consen 287 DTLSELREKYK-QASVG----VSSRTETLDEVMDEIEQLKQEMEEQGAKMSDGAPLVKIKQAVSKLKEETQTMNVQIGVF 361 (384)
T ss_pred HHHHHHHHHHH-Hhccc----HHHHHHHHHHHHHHHHHHHHHHHHhcccccCCchHHHHHHHHHHHHHHHHhhhhheehh
Q ss_pred HHHH
Q 006565 310 KLET 313 (640)
Q Consensus 310 e~el 313 (640)
+.-+
T Consensus 362 ehs~ 365 (384)
T KOG0972|consen 362 EHSI 365 (384)
T ss_pred hHHH
No 493
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=25.10 E-value=6.2e+02 Score=24.31 Aligned_cols=118 Identities=15% Similarity=0.208 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHhHHHHH----HhhhcCchhHHHHHHHHHHhhHHhHHHHHHHhhHHhHHHHHhhHHHHHHHHhHHhhh
Q 006565 68 ILDLVKRLIDQIGSERSSL----MLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGEN 143 (640)
Q Consensus 68 ~~d~~~~~~~~i~~~~~~l----~~~c~s~~~k~~~~~k~le~~~k~~~~~~k~~e~~i~d~kk~~~~~~~~~~~l~~k~ 143 (640)
.+-+.-++|+.|.+++..- .+.|-=..++|..--+.+=+=++.-++++++|-+.-.+.-...-...+++..++...
T Consensus 10 ~eali~~lFa~VSalKaAY~qLQ~Ah~PyDpd~I~aAD~~vVsEL~~Ls~LK~~y~~~~~~~~~~~~~l~a~~~e~qsli 89 (131)
T PF04859_consen 10 MEALIAKLFATVSALKAAYAQLQQAHSPYDPDKIQAADEAVVSELRRLSELKRRYRKKQSDPSPQVARLAAEIQEQQSLI 89 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccccchHHHHHHH
Q ss_pred cchHHhHHhhHHhHHhhhhhhHHHHHHHHHHHhHhhHhhHHH
Q 006565 144 ISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQV 185 (640)
Q Consensus 144 ~s~ee~~~~l~k~le~~~~e~~ew~~kYe~~~~~~k~~~~~~ 185 (640)
.+.|=-..-|..+++.-..|...-+.+-+.....++.++.++
T Consensus 90 ~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lekrl 131 (131)
T PF04859_consen 90 KTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLEKRL 131 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
No 494
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=24.94 E-value=5.1e+02 Score=23.29 Aligned_cols=78 Identities=23% Similarity=0.236 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHhhhHHHhhhHHHHH----HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 220 WKRKYGVAVREAKAALEKAAI-VQERTSKEMQQREDVLR----EEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKA 294 (640)
Q Consensus 220 wkrky~~L~~QAKkAeek~a~-L~er~~~~~q~r~~a~r----ee~~s~le~kE~kie~~k~ei~~aEq~la~~q~eL~e 294 (640)
|+.++......+..+-++.+. |-....+..+.+..||+ ..+...+..++.+...+..++..+..++...+.+-..
T Consensus 2 l~~~~~~~~~ev~~~ve~vA~eLh~~YssKHE~KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~ 81 (87)
T PF12709_consen 2 LKKKLEESQKEVEKAVEKVARELHALYSSKHETKVKALKKSYEARWEKKVDELENENKALKRENEQLKKKLDTEREEKQE 81 (87)
T ss_pred HHhHHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH
Q 006565 295 AES 297 (640)
Q Consensus 295 ~e~ 297 (640)
+..
T Consensus 82 Ll~ 84 (87)
T PF12709_consen 82 LLK 84 (87)
T ss_pred HHH
No 495
>PF07794 DUF1633: Protein of unknown function (DUF1633); InterPro: IPR012436 This family contains sequences derived from a group of hypothetical proteins expressed by Arabidopsis thaliana (Mouse-ear cress). These sequences are highly similar and the region concerned is about 100 residues long.
Probab=24.91 E-value=1.2e+03 Score=27.47 Aligned_cols=123 Identities=20% Similarity=0.190 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 006565 314 KELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEF 393 (640)
Q Consensus 314 ~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~areead~aq~E~~el 393 (640)
+-..++.-..+-++..++-..+.....|..|+++.+.+.++.-.+..--..+++.+..++.++..+...+.+--+|++..
T Consensus 593 kG~Aeki~~me~Ei~glq~DkQ~ar~qIh~Le~~Reelsk~V~DLtssaQgakKAVhdaK~ElA~~Y~klLagiKEKwv~ 672 (790)
T PF07794_consen 593 KGYAEKIGFMEMEIGGLQADKQTARNQIHRLEQRREELSKRVMDLTSSAQGAKKAVHDAKVELAAAYSKLLAGIKEKWVA 672 (790)
T ss_pred hhhHhhhhhhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHH
Q 006565 394 ENLA---MERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALS 437 (640)
Q Consensus 394 Qr~~---~qrlaeIerl~~qIE~lEre~e~Le~E~~~l~~sEl~al~ 437 (640)
.+.. .-.-++++.--..|+.+-.-.-+|.-++-+|. .|++.++
T Consensus 673 KKe~t~le~qAaEvesNlaLidqi~kaaIdltvEkprlq-AeLdd~e 718 (790)
T PF07794_consen 673 KKEYTVLEGQAAEVESNLALIDQITKAAIDLTVEKPRLQ-AELDDLE 718 (790)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHH-hhchHHH
No 496
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=24.88 E-value=97 Score=30.74 Aligned_cols=38 Identities=18% Similarity=0.295 Sum_probs=0.0
Q ss_pred HHHHHhHHhhhcchHHhHHhhHHhHHhhhhhhHHHHHH
Q 006565 133 TSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRK 170 (640)
Q Consensus 133 ~~~~~~l~~k~~s~ee~~~~l~k~le~~~~e~~ew~~k 170 (640)
..+...|+.....+||.+.+|...|-+-++++.||+||
T Consensus 28 EeE~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrk 65 (162)
T PF04201_consen 28 EEEREELRSELAKVEEEIQTLRQVLAAKERHCAELKRK 65 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
No 497
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=24.61 E-value=5.1e+02 Score=23.18 Aligned_cols=83 Identities=12% Similarity=0.115 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHH
Q 006565 313 TKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEF----------------------ERFEEVQERCKVAEKEAK 370 (640)
Q Consensus 313 l~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~----------------------er~ee~~~rleeaEee~k 370 (640)
+..+...+..+...+..+..++..+..++.+...=...+. +....+..+.+..+.+++
T Consensus 1 ~q~~~~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~ 80 (105)
T cd00632 1 VQEQLAQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVKQEKEEARTELKERLETIELRIK 80 (105)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHH
Q 006565 371 KATELADRERAEAAAARKGKSEFEN 395 (640)
Q Consensus 371 ea~e~~~~areead~aq~E~~elQr 395 (640)
......+.....+...+.+..++|+
T Consensus 81 ~l~~~~~~l~~~~~elk~~l~~~~~ 105 (105)
T cd00632 81 RLERQEEDLQEKLKELQEKIQQAQK 105 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
No 498
>PHA03395 p10 fibrous body protein; Provisional
Probab=24.45 E-value=3e+02 Score=24.74 Aligned_cols=56 Identities=13% Similarity=0.217 Sum_probs=0.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhHHHHHHHHHHHHHHHHhhh
Q 006565 457 LESNNEQRASTVKKLEDLLESERRSR---AAANAMAERLSLEVQSAQAKLDEMQQELTK 512 (640)
Q Consensus 457 ~~~~~eq~~~~l~~le~~le~~re~l---~e~nrrleal~~e~~~lqs~id~Leg~~~~ 512 (640)
+...+..+-.+|..+...+..++..+ .+.+.++++....+..+++.++.++..+++
T Consensus 9 Ir~dIkavd~KVdalQ~~V~~l~~nlpdv~~l~~kLdaq~~~Ltti~tkv~~I~diLnp 67 (87)
T PHA03395 9 IRQDIKAVSDKVDALQAAVDDVRANLPDVTEINEKLDAQSASLDTISSAVDNITDILNP 67 (87)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHHHHHHHHHHHHHHHccCC
No 499
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=24.36 E-value=4.6e+02 Score=24.17 Aligned_cols=54 Identities=13% Similarity=0.153 Sum_probs=0.0
Q ss_pred hhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 300 RSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFE 353 (640)
Q Consensus 300 k~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~e 353 (640)
+.+=..+..++++|..+...+..++..+..+..+-..|.-|..+|.+.+....+
T Consensus 4 ~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 4 KELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 500
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=24.23 E-value=4e+02 Score=22.39 Aligned_cols=51 Identities=10% Similarity=0.244 Sum_probs=0.0
Q ss_pred HHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 292 LKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKV 342 (640)
Q Consensus 292 L~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~ 342 (640)
+.....++...+.++......+..|+.........+.+...++..+.....
T Consensus 1 ~~~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~k 51 (71)
T PF10779_consen 1 LQDIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTK 51 (71)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!