Query 006565
Match_columns 640
No_of_seqs 79 out of 81
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 02:58:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006565.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006565hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 99.6 6.3E-10 2.1E-14 108.7 44.9 279 220-512 4-283 (284)
2 1c1g_A Tropomyosin; contractIl 99.4 3.7E-08 1.3E-12 96.1 44.8 134 362-503 148-281 (284)
3 1i84_S Smooth muscle myosin he 99.2 2.4E-11 8.1E-16 146.9 11.0 144 195-343 858-1001(1184)
4 1i84_S Smooth muscle myosin he 99.0 5.1E-10 1.7E-14 135.4 10.9 42 465-506 1122-1163(1184)
5 2efr_A General control protein 98.0 0.0041 1.4E-07 59.0 24.9 139 265-407 14-152 (155)
6 3na7_A HP0958; flagellar bioge 97.6 0.0061 2.1E-07 61.8 21.4 18 541-560 201-218 (256)
7 3na7_A HP0958; flagellar bioge 97.6 0.026 9E-07 57.1 25.1 45 333-377 91-135 (256)
8 2efr_A General control protein 97.5 0.059 2E-06 51.1 25.0 59 289-347 27-85 (155)
9 2v71_A Nuclear distribution pr 97.5 0.023 8E-07 55.5 22.6 149 211-370 6-154 (189)
10 2v71_A Nuclear distribution pr 97.2 0.077 2.6E-06 51.8 22.1 117 310-429 9-129 (189)
11 3vkg_A Dynein heavy chain, cyt 96.9 0.38 1.3E-05 63.8 30.9 186 165-358 1898-2103(3245)
12 3vkg_A Dynein heavy chain, cyt 96.7 0.73 2.5E-05 61.2 31.2 85 412-498 2017-2102(3245)
13 3o0z_A RHO-associated protein 96.6 0.44 1.5E-05 45.6 21.3 69 387-456 33-109 (168)
14 2b9c_A Striated-muscle alpha t 96.4 0.05 1.7E-06 51.2 13.5 134 194-339 10-143 (147)
15 3o0z_A RHO-associated protein 96.4 0.75 2.6E-05 44.1 21.4 130 197-338 9-138 (168)
16 2fxo_A Myosin heavy chain, car 96.2 0.62 2.1E-05 42.5 19.5 63 303-365 12-74 (129)
17 2ocy_A RAB guanine nucleotide 96.0 0.66 2.3E-05 43.9 19.1 142 270-429 7-149 (154)
18 2dfs_A Myosin-5A; myosin-V, in 96.0 0.21 7.1E-06 60.3 19.5 16 18-33 509-524 (1080)
19 3u1c_A Tropomyosin alpha-1 cha 95.7 0.35 1.2E-05 42.5 14.6 93 219-316 6-98 (101)
20 4gkw_A Spindle assembly abnorm 95.6 1.3 4.6E-05 40.7 22.6 140 356-507 21-160 (167)
21 3u59_A Tropomyosin beta chain; 95.4 0.42 1.4E-05 41.8 14.1 93 219-316 6-98 (101)
22 2ocy_A RAB guanine nucleotide 95.3 2.1 7E-05 40.5 20.3 82 400-483 56-139 (154)
23 2dfs_A Myosin-5A; myosin-V, in 95.1 0.42 1.4E-05 57.7 17.8 24 413-437 1020-1043(1080)
24 2fxo_A Myosin heavy chain, car 95.0 2.1 7.1E-05 39.0 18.5 99 281-379 18-116 (129)
25 3u59_A Tropomyosin beta chain; 94.6 1.4 4.7E-05 38.6 15.3 29 316-344 14-42 (101)
26 2b9c_A Striated-muscle alpha t 94.5 0.22 7.4E-06 46.8 10.3 76 201-288 3-78 (147)
27 3tnu_B Keratin, type II cytosk 94.2 0.99 3.4E-05 41.1 14.0 85 203-288 24-108 (129)
28 3ol1_A Vimentin; structural ge 94.0 0.91 3.1E-05 40.9 13.2 54 116-183 16-69 (119)
29 3tnu_A Keratin, type I cytoske 93.9 0.81 2.8E-05 41.8 12.8 86 202-288 25-110 (131)
30 1f5n_A Interferon-induced guan 93.7 3 0.0001 47.2 19.4 58 4-62 404-467 (592)
31 3oja_B Anopheles plasmodium-re 93.6 1.3 4.4E-05 49.0 16.2 28 265-292 459-486 (597)
32 3oja_B Anopheles plasmodium-re 93.2 1.7 5.8E-05 48.0 16.4 34 265-298 452-485 (597)
33 2eqb_B RAB guanine nucleotide 92.1 4.5 0.00015 35.4 13.9 83 386-470 10-94 (97)
34 3swk_A Vimentin; cytoskeleton, 92.0 1.6 5.6E-05 37.2 11.0 77 404-482 2-79 (86)
35 2jee_A YIIU; FTSZ, septum, coi 91.8 1.7 5.7E-05 37.0 10.6 72 291-362 7-78 (81)
36 2v66_B Nuclear distribution pr 91.0 8.3 0.00028 34.5 16.0 103 147-268 2-104 (111)
37 2eqb_B RAB guanine nucleotide 90.0 8.5 0.00029 33.7 13.7 48 321-368 8-55 (97)
38 3tnu_B Keratin, type II cytosk 90.0 7.4 0.00025 35.2 14.1 44 394-438 81-124 (129)
39 3tnu_A Keratin, type I cytoske 89.4 6.6 0.00022 35.7 13.3 44 394-438 83-126 (131)
40 2v66_B Nuclear distribution pr 89.2 12 0.00041 33.5 15.7 34 200-233 2-35 (111)
41 1zrj_A E1B-55KDA-associated pr 87.9 0.6 2E-05 36.2 4.4 41 590-636 4-44 (50)
42 1deq_A Fibrinogen (alpha chain 86.2 17 0.00057 38.9 15.6 23 213-235 54-76 (390)
43 2e7s_A RAB guanine nucleotide 85.8 1.8 6.2E-05 40.1 7.2 86 336-421 43-129 (135)
44 2jee_A YIIU; FTSZ, septum, coi 85.7 14 0.00047 31.4 11.9 70 439-509 8-77 (81)
45 2e7s_A RAB guanine nucleotide 85.0 1.2 4.2E-05 41.2 5.6 79 404-484 48-128 (135)
46 1h1j_S THO1 protein; SAP domai 84.7 0.96 3.3E-05 35.2 4.1 38 593-636 2-39 (51)
47 3i00_A HIP-I, huntingtin-inter 84.2 3.3 0.00011 37.6 8.0 91 409-501 15-113 (120)
48 3ghg_A Fibrinogen alpha chain; 84.2 8 0.00027 42.9 12.4 25 311-335 131-155 (562)
49 2v4h_A NF-kappa-B essential mo 84.2 21 0.00071 31.9 12.9 29 313-341 26-54 (110)
50 2i1j_A Moesin; FERM, coiled-co 83.8 1.5 5.3E-05 49.3 7.0 112 285-396 337-448 (575)
51 3ol1_A Vimentin; structural ge 83.6 24 0.00082 31.6 16.1 34 262-295 20-53 (119)
52 3oja_A Leucine-rich immune mol 82.2 29 0.001 37.2 16.2 29 465-493 448-476 (487)
53 3hnw_A Uncharacterized protein 82.0 13 0.00046 34.2 11.4 57 270-326 76-132 (138)
54 3q8t_A Beclin-1; autophagy, AT 81.0 27 0.00092 30.2 14.9 35 387-421 59-93 (96)
55 2v4h_A NF-kappa-B essential mo 80.9 20 0.00068 32.0 11.5 43 463-505 66-108 (110)
56 2i1j_A Moesin; FERM, coiled-co 80.3 1.6 5.6E-05 49.1 5.5 111 271-381 337-447 (575)
57 3mq9_A Bone marrow stromal ant 79.6 34 0.0011 36.6 15.4 69 260-328 395-467 (471)
58 3q8t_A Beclin-1; autophagy, AT 79.5 30 0.001 29.9 14.1 43 413-456 8-51 (96)
59 3a7p_A Autophagy protein 16; c 79.4 27 0.00093 32.8 12.5 63 282-344 67-129 (152)
60 3ghg_A Fibrinogen alpha chain; 77.8 85 0.0029 35.0 17.6 42 315-356 114-155 (562)
61 1deq_A Fibrinogen (alpha chain 77.8 52 0.0018 35.2 15.5 74 434-508 116-190 (390)
62 3oja_A Leucine-rich immune mol 76.7 84 0.0029 33.6 17.8 55 320-374 423-477 (487)
63 3trt_A Vimentin; cytoskeleton, 74.1 34 0.0012 27.8 10.5 61 440-500 16-76 (77)
64 2nrj_A HBL B protein; enteroto 72.9 97 0.0033 32.5 18.6 255 25-292 47-334 (346)
65 2do1_A Nuclear protein HCC-1; 72.7 3.3 0.00011 32.7 3.7 40 591-636 5-44 (55)
66 3bas_A Myosin heavy chain, str 72.3 44 0.0015 28.3 12.5 44 304-347 14-57 (89)
67 1jjr_A KU70, thyroid autoantig 70.7 1.4 4.9E-05 41.5 1.5 77 545-635 17-94 (151)
68 2no2_A HIP-I, huntingtin-inter 69.6 59 0.002 28.7 15.9 38 458-495 60-97 (107)
69 1m1j_A Fibrinogen alpha subuni 69.6 67 0.0023 35.2 14.1 29 212-240 51-79 (491)
70 4h22_A Leucine-rich repeat fli 67.9 42 0.0015 29.6 10.1 75 313-387 4-78 (103)
71 3a7o_A Autophagy protein 16; c 67.4 31 0.0011 28.5 8.5 56 283-345 18-73 (75)
72 3a7p_A Autophagy protein 16; c 66.1 51 0.0017 31.0 10.9 65 298-362 69-133 (152)
73 3swk_A Vimentin; cytoskeleton, 65.4 62 0.0021 27.3 11.5 78 190-272 3-80 (86)
74 2kvu_A MKL/myocardin-like prot 64.2 2.6 9E-05 35.3 1.6 40 591-636 21-60 (75)
75 3mq9_A Bone marrow stromal ant 63.9 1.4E+02 0.0048 31.7 15.7 12 445-456 444-455 (471)
76 3jsv_C NF-kappa-B essential mo 63.4 60 0.0021 28.2 10.0 29 313-341 4-32 (94)
77 3bas_A Myosin heavy chain, str 62.7 70 0.0024 27.1 11.8 22 291-312 36-57 (89)
78 2j69_A Bacterial dynamin-like 62.5 2.1E+02 0.0072 32.5 25.7 85 95-179 366-493 (695)
79 3s4r_A Vimentin; alpha-helix, 61.6 77 0.0026 27.1 12.2 34 285-318 11-44 (93)
80 4fla_A Regulation of nuclear P 61.4 53 0.0018 30.7 10.2 79 149-227 69-147 (152)
81 2zqm_A Prefoldin beta subunit 59.7 63 0.0022 27.8 10.0 18 439-456 72-89 (117)
82 3mq7_A Bone marrow stromal ant 58.6 1E+02 0.0036 27.7 14.5 75 267-341 30-108 (121)
83 1x8y_A Lamin A/C; structural p 57.7 47 0.0016 28.0 8.4 16 439-454 37-52 (86)
84 3qh9_A Liprin-beta-2; coiled-c 57.6 87 0.003 26.5 9.8 50 280-329 23-72 (81)
85 2ke4_A CDC42-interacting prote 56.5 82 0.0028 27.4 9.9 37 478-514 60-96 (98)
86 3iox_A AGI/II, PA; alpha helix 55.4 1.4E+02 0.0048 33.0 13.6 101 95-223 9-109 (497)
87 3htk_A Structural maintenance 54.5 42 0.0014 26.0 7.0 44 183-226 15-58 (60)
88 1jcd_A Major outer membrane li 54.0 63 0.0021 25.1 7.7 27 465-491 24-50 (52)
89 1fxk_A Prefoldin; archaeal pro 53.6 1E+02 0.0034 26.1 10.1 86 389-475 2-102 (107)
90 3mov_A Lamin-B1; LMNB1, B-type 53.5 47 0.0016 28.7 7.8 53 400-456 10-63 (95)
91 1hci_A Alpha-actinin 2; triple 53.0 2.2E+02 0.0077 29.8 33.6 344 11-371 75-470 (476)
92 3hhm_B NISH2 P85alpha; PI3KCA, 50.4 1.6E+02 0.0054 31.3 12.9 114 113-228 130-246 (373)
93 3s4r_A Vimentin; alpha-helix, 50.2 1.2E+02 0.0041 25.9 12.7 35 311-345 9-43 (93)
94 3jsv_C NF-kappa-B essential mo 50.0 1.3E+02 0.0044 26.2 9.9 50 271-320 4-56 (94)
95 2p22_C Protein SRN2; endosome, 49.5 1.4E+02 0.0046 29.0 11.3 108 131-241 73-184 (192)
96 3cvf_A Homer-3, homer protein 49.3 1.2E+02 0.004 25.5 9.3 47 333-379 14-60 (79)
97 3qh9_A Liprin-beta-2; coiled-c 48.7 1.2E+02 0.0042 25.6 9.9 53 308-360 23-75 (81)
98 1x79_B RAB GTPase binding effe 47.5 1.5E+02 0.0053 26.4 13.8 52 360-411 38-89 (112)
99 3he5_A Synzip1; heterodimeric 46.6 73 0.0025 23.6 6.6 43 439-482 5-47 (49)
100 1go4_E MAD1 (mitotic arrest de 46.6 94 0.0032 27.3 8.6 23 485-507 73-95 (100)
101 1gk4_A Vimentin; intermediate 46.2 1.3E+02 0.0044 25.1 10.5 40 439-479 35-74 (84)
102 2xdj_A Uncharacterized protein 46.2 1.3E+02 0.0046 25.3 10.3 32 463-494 24-55 (83)
103 3ter_A Mammalian stromal inter 45.0 1.6E+02 0.0055 27.1 10.3 107 269-375 6-126 (136)
104 1x8y_A Lamin A/C; structural p 43.2 78 0.0027 26.6 7.5 73 96-193 4-76 (86)
105 4fla_A Regulation of nuclear P 43.0 1.5E+02 0.0053 27.6 10.1 76 94-183 67-142 (152)
106 3i00_A HIP-I, huntingtin-inter 41.8 1.4E+02 0.0049 26.8 9.3 64 157-227 17-80 (120)
107 2w83_C C-JUN-amino-terminal ki 41.4 1.6E+02 0.0054 24.7 9.3 41 415-456 8-49 (77)
108 3nmd_A CGMP dependent protein 38.9 1E+02 0.0034 25.6 7.1 20 488-507 48-67 (72)
109 3efg_A Protein SLYX homolog; x 38.4 79 0.0027 26.3 6.6 48 302-349 12-59 (78)
110 2w83_C C-JUN-amino-terminal ki 38.4 1.8E+02 0.006 24.4 9.2 66 408-474 8-73 (77)
111 1m1j_C Fibrinogen gamma chain; 38.3 3.3E+02 0.011 29.3 13.2 32 319-350 85-116 (409)
112 3trt_A Vimentin; cytoskeleton, 37.3 1.6E+02 0.0055 23.7 10.1 61 166-232 13-73 (77)
113 1t2k_D Cyclic-AMP-dependent tr 37.1 86 0.0029 24.5 6.4 34 446-480 24-57 (61)
114 3mq7_A Bone marrow stromal ant 36.8 2.4E+02 0.0081 25.4 14.1 32 263-294 72-103 (121)
115 1wt6_A Myotonin-protein kinase 36.4 2E+02 0.0067 24.4 8.9 44 412-456 20-64 (81)
116 3iox_A AGI/II, PA; alpha helix 36.0 4.8E+02 0.017 28.8 15.7 34 200-233 8-41 (497)
117 1gd2_E Transcription factor PA 35.8 47 0.0016 27.3 4.7 13 406-418 26-38 (70)
118 4h22_A Leucine-rich repeat fli 35.5 2.3E+02 0.0079 24.9 9.8 47 337-383 21-67 (103)
119 1m1j_A Fibrinogen alpha subuni 35.4 4.8E+02 0.016 28.6 14.5 35 330-364 63-97 (491)
120 4gkw_A Spindle assembly abnorm 34.4 2.8E+02 0.0095 25.5 22.7 25 378-402 57-81 (167)
121 3efg_A Protein SLYX homolog; x 33.1 1E+02 0.0035 25.6 6.4 43 465-507 20-62 (78)
122 2out_A MU-like prophage flumu 32.2 20 0.00069 32.9 2.1 40 591-634 84-123 (131)
123 1go4_E MAD1 (mitotic arrest de 31.6 2.4E+02 0.0083 24.6 8.8 32 319-350 13-44 (100)
124 1m1j_C Fibrinogen gamma chain; 31.1 3.8E+02 0.013 28.8 12.3 6 610-615 212-217 (409)
125 3ljm_A Coil Ser L9C; de novo d 30.0 32 0.0011 23.4 2.2 25 84-108 4-28 (31)
126 3ljm_A Coil Ser L9C; de novo d 29.8 31 0.0011 23.4 2.2 26 137-162 4-29 (31)
127 1ci6_A Transcription factor AT 29.4 1.5E+02 0.0053 23.4 6.7 19 458-476 36-54 (63)
128 3l4q_C Phosphatidylinositol 3- 29.3 3.8E+02 0.013 25.5 14.6 118 390-509 12-146 (170)
129 4etp_A Kinesin-like protein KA 29.1 1.1E+02 0.0037 32.7 7.6 54 446-500 5-58 (403)
130 1xaw_A Occludin; coiled-coil, 28.9 2.5E+02 0.0084 26.0 8.8 78 136-223 61-138 (140)
131 3cve_A Homer protein homolog 1 28.9 2.5E+02 0.0084 23.2 10.7 35 312-346 29-63 (72)
132 2pms_C Pneumococcal surface pr 27.5 3.5E+02 0.012 24.6 9.8 20 434-453 99-119 (125)
133 4emc_A Monopolin complex subun 27.0 3.2E+02 0.011 26.5 9.6 39 304-342 20-58 (190)
134 2wt7_A Proto-oncogene protein 26.8 1.8E+02 0.0062 22.8 6.7 9 465-473 43-51 (63)
135 2z5i_A TM, general control pro 26.7 2.2E+02 0.0074 21.9 7.3 41 324-364 4-44 (52)
136 3vp9_A General transcriptional 26.7 1.6E+02 0.0053 25.5 6.6 67 273-342 18-85 (92)
137 3m9b_A Proteasome-associated A 26.6 50 0.0017 33.5 4.1 41 304-344 54-94 (251)
138 1jjr_A KU70, thyroid autoantig 26.4 14 0.00047 34.8 0.0 37 592-635 111-148 (151)
139 3cl3_D NF-kappa-B essential mo 26.4 2.2E+02 0.0075 26.0 7.8 91 285-375 4-98 (130)
140 3mov_A Lamin-B1; LMNB1, B-type 26.0 1.2E+02 0.0041 26.1 5.9 77 92-193 9-85 (95)
141 4emc_A Monopolin complex subun 26.0 2.7E+02 0.0094 27.0 8.9 47 439-486 8-54 (190)
142 3edv_A Spectrin beta chain, br 25.8 4.8E+02 0.016 25.6 33.2 33 312-344 253-285 (323)
143 1f5n_A Interferon-induced guan 25.7 7.4E+02 0.025 27.7 28.8 51 89-140 342-396 (592)
144 2xzr_A Immunoglobulin-binding 25.5 3.4E+02 0.012 23.7 16.3 64 275-338 40-103 (114)
145 4etp_A Kinesin-like protein KA 23.8 1.8E+02 0.0062 31.0 8.1 47 298-344 11-57 (403)
146 1t2k_D Cyclic-AMP-dependent tr 23.7 2.2E+02 0.0076 22.1 6.6 31 314-344 25-55 (61)
147 3ghg_C Fibrinogen gamma chain; 23.3 7.2E+02 0.025 26.7 12.7 26 323-348 89-114 (411)
148 1jnm_A Proto-oncogene C-JUN; B 23.0 85 0.0029 24.7 4.0 20 458-477 35-54 (62)
149 2p22_C Protein SRN2; endosome, 22.1 5.3E+02 0.018 24.7 14.9 52 404-456 130-184 (192)
150 2xv5_A Lamin-A/C; structural p 21.9 3.3E+02 0.011 22.3 7.9 50 388-438 5-54 (74)
151 1sjj_A Actinin; 3-helix bundle 21.3 9.4E+02 0.032 27.3 35.2 22 190-211 373-394 (863)
152 1guu_A C-MYB, MYB proto-oncoge 20.6 57 0.002 24.2 2.5 15 48-62 21-35 (52)
153 3he5_B Synzip2; heterodimeric 20.3 2.8E+02 0.0095 20.8 6.7 38 449-487 8-45 (52)
154 2k48_A Nucleoprotein; viral pr 20.1 3.8E+02 0.013 23.7 7.8 64 418-485 37-101 (107)
155 3c9i_A Tail needle protein GP2 20.1 6.3E+02 0.022 24.9 14.1 64 281-344 82-145 (242)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=99.55 E-value=6.3e-10 Score=108.68 Aligned_cols=279 Identities=16% Similarity=0.210 Sum_probs=156.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 220 WKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKM 299 (640)
Q Consensus 220 wkrky~~L~~QAKkAeek~a~L~er~~~~~q~r~~a~ree~~s~le~kE~kie~~k~ei~~aEq~la~~q~eL~e~e~kI 299 (640)
+++++..+..+.......+..+...+. .+... ...+...+......+..+...+......+..++..+..+...+
T Consensus 4 ~~~~~~~l~~~~~~~~~~~~~l~~~l~-~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (284)
T 1c1g_A 4 IKKKMQMLKLDKENALDRADEAEADKK-AAEDR----SKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKA 78 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555553 55555 4444555555555666666666666666666666666666666
Q ss_pred hhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 300 RSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRE 379 (640)
Q Consensus 300 k~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~a 379 (640)
..+...+..+..++..+......+...+......+..+...+..+...+......+......+..+...+..+...+..+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 158 (284)
T 1c1g_A 79 TDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDA 158 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666666666666665555555555555555544444444444444444444444444444
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 006565 380 RAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSK-VALLEARVEEREKEIESLLE 458 (640)
Q Consensus 380 reead~aq~E~~elQr~~~qrlaeIerl~~qIE~lEre~e~Le~E~~~l~~sEl~al~k-v~~lE~~vee~e~eiE~L~~ 458 (640)
...+...+..... ....+..+...+..+..++..+...+..+. .++..+.. +..+...+......+..+ .
T Consensus 159 ~~~~~~~~~~~~~-------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~l-~ 229 (284)
T 1c1g_A 159 DRKYEEVARKLVI-------IESDLERAEERAELSEGKCAELEEEIKTVT-NNLKSLEAQAEKYSQKEDKYEEEIKVL-S 229 (284)
T ss_dssp HHHHHHHTHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHH-H
Confidence 4444444444433 444444444444444444444444444444 44444444 444445555555555555 5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhh
Q 006565 459 SNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQELTK 512 (640)
Q Consensus 459 ~~~eq~~~~l~~le~~le~~re~l~e~nrrleal~~e~~~lqs~id~Leg~~~~ 512 (640)
.....+...+..+...+......+......+..+...+..+...++.+...+.+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 283 (284)
T 1c1g_A 230 DKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTS 283 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 555555666666666666666666666666666666667777777776666544
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=99.41 E-value=3.7e-08 Score=96.09 Aligned_cols=134 Identities=14% Similarity=0.132 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHHHHH
Q 006565 362 CKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVAL 441 (640)
Q Consensus 362 leeaEee~kea~e~~~~areead~aq~E~~elQr~~~qrlaeIerl~~qIE~lEre~e~Le~E~~~l~~sEl~al~kv~~ 441 (640)
+..+...+..+...+......+.....+...+...+......+..+...+..+...+..+...+..+. .. +..
T Consensus 148 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~ 220 (284)
T 1c1g_A 148 LKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYS-QK------EDK 220 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH------HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HH------HHH
Confidence 33333333333333333333333334444444444444444444444444444444333333333333 22 333
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 006565 442 LEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKL 503 (640)
Q Consensus 442 lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~l~e~nrrleal~~e~~~lqs~i 503 (640)
++..+......+..+ ..........+..+...+...+..+......+..+..+++.+...|
T Consensus 221 ~~~~l~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 281 (284)
T 1c1g_A 221 YEEEIKVLSDKLKEA-ETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDM 281 (284)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333333333 3444444555555555555555555555555555555555544444
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=99.21 E-value=2.4e-11 Score=146.92 Aligned_cols=144 Identities=22% Similarity=0.257 Sum_probs=52.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhHHHHHHHHHHHHH
Q 006565 195 RSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEK 274 (640)
Q Consensus 195 Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a~L~er~~~~~q~r~~a~ree~~s~le~kE~kie~~ 274 (640)
...+...+|..+..+|.++.+.+.+.+.++..|..+...+...+........ .++.+ ...+......++.++..+
T Consensus 858 El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~-~~e~~----l~~l~~~~~~Le~~l~el 932 (1184)
T 1i84_S 858 EMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYA-EAEEM----RVRLAAKKQELEEILHEM 932 (1184)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHH-HHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH----HHHHHHHHHHHHHHHHHH
Confidence 3445677888899999999999999999999888877777755554444442 34444 333333344444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 275 ATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVY 343 (640)
Q Consensus 275 k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~ 343 (640)
..++...+..+..+..++..++.++..+..++..++..+..+...+..+..++..++.++..+..++..
T Consensus 933 e~elee~ee~l~el~~e~~~le~el~~L~~eleele~~l~~l~~e~~~le~~l~~l~~el~~lee~l~~ 1001 (1184)
T 1i84_S 933 EARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNK 1001 (1184)
T ss_dssp HHHHHHHHHC-----------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444333333333333333333333333333333333333333333333333333333333
No 4
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=99.02 E-value=5.1e-10 Score=135.39 Aligned_cols=42 Identities=29% Similarity=0.435 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 006565 465 ASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEM 506 (640)
Q Consensus 465 ~~~l~~le~~le~~re~l~e~nrrleal~~e~~~lqs~id~L 506 (640)
..++..+...++..+..+.........+..++..++..|+.+
T Consensus 1122 e~eie~L~eeLee~~~~~~~le~q~~~L~~ele~L~~~Ieel 1163 (1184)
T 1i84_S 1122 ESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDT 1163 (1184)
T ss_dssp ------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333444444444444444443
No 5
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=97.98 E-value=0.0041 Score=59.02 Aligned_cols=139 Identities=14% Similarity=0.095 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 265 AEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYL 344 (640)
Q Consensus 265 e~kE~kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L 344 (640)
+.-+.+|++... .+..+......+..++++|..++.++...-..++.|.........+-..|+.++..|...+...
T Consensus 14 e~ad~KyeEvaR----~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEA 89 (155)
T 2efr_A 14 SKNYHLENEVAR----LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEA 89 (155)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555444 7777777777788888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 006565 345 EQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERV 407 (640)
Q Consensus 345 ~ekl~se~er~ee~~~rleeaEee~kea~e~~~~areead~aq~E~~elQr~~~qrlaeIerl 407 (640)
..+.+.+.-....+...++.++.++....+.......+++..-.+...++-....+.++|.|+
T Consensus 90 E~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~~~~ 152 (155)
T 2efr_A 90 ETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVARL 152 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHh
Confidence 888888888888888888888888888888888888888877777777777777777777766
No 6
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.62 E-value=0.0061 Score=61.77 Aligned_cols=18 Identities=22% Similarity=0.113 Sum_probs=10.0
Q ss_pred ccccccccCcchHHhhhhcc
Q 006565 541 GVGSVQEMDTNDKVLRANKR 560 (640)
Q Consensus 541 ~~~sv~d~~~~~~~~r~~kr 560 (640)
|.| =-|.|||.....-++
T Consensus 201 C~G--C~~~lppq~~~~i~~ 218 (256)
T 3na7_A 201 CGG--CFIRLNDKIYTEVLT 218 (256)
T ss_dssp CTT--TCCBCCHHHHHHHHH
T ss_pred cCC--CCeeeCHHHHHHHHC
Confidence 455 337777766554443
No 7
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.57 E-value=0.026 Score=57.10 Aligned_cols=45 Identities=11% Similarity=0.123 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 333 EARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELAD 377 (640)
Q Consensus 333 el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~kea~e~~~ 377 (640)
+...|..+|..+..+.......+.++..+++.++..+..+...+.
T Consensus 91 E~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~ 135 (256)
T 3na7_A 91 ELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEML 135 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444333333344434444444443333333333333
No 8
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=97.52 E-value=0.059 Score=51.11 Aligned_cols=59 Identities=20% Similarity=0.279 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 289 RLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQK 347 (640)
Q Consensus 289 q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ek 347 (640)
..+|.-.+.+....++++..++.+++.....+.++...-..+..+-..+...|..|+.+
T Consensus 27 E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~k 85 (155)
T 2efr_A 27 KKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDK 85 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444444444444444333
No 9
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.50 E-value=0.023 Score=55.45 Aligned_cols=149 Identities=15% Similarity=0.142 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 211 LSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRL 290 (640)
Q Consensus 211 ~RVkDel~Ewkrky~~L~~QAKkAeek~a~L~er~~~~~q~r~~a~ree~~s~le~kE~kie~~k~ei~~aEq~la~~q~ 290 (640)
.++.+++.=|+..|..+..+...++..+...++... +++..+. .+++..+.....+...+..+...+...+.
T Consensus 6 ~s~~ee~~ywk~~~~~~~q~~~~le~El~EFqesSr-ELE~ELE-------~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~ 77 (189)
T 2v71_A 6 SSLKEETAYWKELSMKYKQSFQEARDELVEFQEGSR-ELEAELE-------AQLVQAEQRNRDLQADNQRLKYEVEALKE 77 (189)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367899999999999999999999988888888873 6665533 33333333333333333333333333333
Q ss_pred HHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 291 ELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAK 370 (640)
Q Consensus 291 eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~k 370 (640)
.+..... ...+.+..++.++..|......+...+..++..-..|......+...+.-...+|..+-++..-++.++.
T Consensus 78 K~~~~~~---e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~ 154 (189)
T 2v71_A 78 KLEHQYA---QSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELD 154 (189)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222211 1112256666666666666666666666666666666666666666666666666666666666666654
No 10
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.19 E-value=0.077 Score=51.85 Aligned_cols=117 Identities=15% Similarity=0.128 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006565 310 KLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKG 389 (640)
Q Consensus 310 e~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~areead~aq~E 389 (640)
..++......+......+..++.++......-.+|+..++.. ++...++...+...+..+..+++..+..+..++.+
T Consensus 9 ~ee~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~e---L~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e 85 (189)
T 2v71_A 9 KEETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQ---LVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQ 85 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444455555555555555555554443332 23344555555555555566666665555555555
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhc
Q 006565 390 ----KSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIR 429 (640)
Q Consensus 390 ----~~elQr~~~qrlaeIerl~~qIE~lEre~e~Le~E~~~l~ 429 (640)
...+|..+..+......+...|-.+|+.-++|++......
T Consensus 86 ~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~ 129 (189)
T 2v71_A 86 SYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATI 129 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4444555555555555555555555555555554443333
No 11
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.88 E-value=0.38 Score=63.78 Aligned_cols=186 Identities=13% Similarity=0.129 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHhHhhHhhHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 006565 165 SDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIV--- 241 (640)
Q Consensus 165 ~ew~~kYe~~~~~~k~~~~~~AAGIsklK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a~L--- 241 (640)
.|..+-|-..+++++ ..|..-+.|-..=+.||..|.++.+-.+.++.+-+.++.....+|.+..++...-
T Consensus 1898 Leli~~y~~ll~~K~-------~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ 1970 (3245)
T 3vkg_A 1898 LDFINQVVLLINEKR-------DQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQA 1970 (3245)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555444443 4444445555555666666666666666666666665555544444433222211
Q ss_pred -----------HHhhhHHHhhhHHHHHHHHhHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 006565 242 -----------QERTSKEMQQREDVLREEFSSTLAE------KEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEV 304 (640)
Q Consensus 242 -----------~er~~~~~q~r~~a~ree~~s~le~------kE~kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ 304 (640)
+...+ .......+.+.+...+++. |+.++..+..++..+..++...+..|.+.+.++..+..
T Consensus 1971 ae~~k~~v~~~~~~~~-~~~~ei~~~k~~~e~dL~~A~Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~ 2049 (3245)
T 3vkg_A 1971 AEIKQKDARELQVQLD-VRNKEIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKE 2049 (3245)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 1111111112333333222 33344444444444444444444444555555555544
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 305 EISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEV 358 (640)
Q Consensus 305 ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~ 358 (640)
+...+..+...|..+.+..+.++...++-+..|..|..+.++........+..+
T Consensus 2050 ~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~L 2103 (3245)
T 3vkg_A 2050 EYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTV 2103 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhc
Confidence 444444445555555555555555555555555555555555555444444333
No 12
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.67 E-value=0.73 Score=61.19 Aligned_cols=85 Identities=19% Similarity=0.287 Sum_probs=34.5
Q ss_pred HHHHHHHHHhHHHHhhhcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 412 ESLERQKTDLTNEVNRIRESELEALSK-VALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAE 490 (640)
Q Consensus 412 E~lEre~e~Le~E~~~l~~sEl~al~k-v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~l~e~nrrle 490 (640)
..++.++......+...+ .++..+.. +..+....++...+.+.| +.+.+..+.++..-+.+|..+-.+..+=...+.
T Consensus 2017 ~~ae~~l~~~~~~L~~~~-~~L~~le~~l~~L~~~~~~~~~ek~~L-~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~ 2094 (3245)
T 3vkg_A 2017 EQLENAANELKLKQDEIV-ATITALEKSIATYKEEYATLIRETEQI-KTESSKVKNKVDRSIALLDNLNSERGRWEQQSE 2094 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhccccHHHHHH
Confidence 333333333333333333 33333333 444444444444444444 444444444444444444444444444333444
Q ss_pred HhhHHHHH
Q 006565 491 RLSLEVQS 498 (640)
Q Consensus 491 al~~e~~~ 498 (640)
.+..++..
T Consensus 2095 ~l~~~~~~ 2102 (3245)
T 3vkg_A 2095 NFNTQMST 2102 (3245)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 44433333
No 13
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=96.57 E-value=0.44 Score=45.63 Aligned_cols=69 Identities=22% Similarity=0.331 Sum_probs=29.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
Q 006565 387 RKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSK--------VALLEARVEEREKEIESL 456 (640)
Q Consensus 387 q~E~~elQr~~~qrlaeIerl~~qIE~lEre~e~Le~E~~~l~~sEl~al~k--------v~~lE~~vee~e~eiE~L 456 (640)
++-..++...+.......-.++-.+..++.....|+.++..|. +.++.=.. +.+++.+|..+..+++.+
T Consensus 33 kK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQ-a~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~ 109 (168)
T 3o0z_A 33 RKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQ-AILEAERRDRGHDSEMIGDLQARITSLQEEVKHL 109 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444344444444444444444444444444 33332222 444455555555444444
No 14
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=96.41 E-value=0.05 Score=51.15 Aligned_cols=134 Identities=22% Similarity=0.233 Sum_probs=107.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhHHHHHHHHHHHH
Q 006565 194 SRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKE 273 (640)
Q Consensus 194 ~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a~L~er~~~~~q~r~~a~ree~~s~le~kE~kie~ 273 (640)
.--.-++.||..+...|.-+...+.|-.+..+.|++..-+..+++..+..++. .+... .+.-+.+|++
T Consensus 10 eeLer~eerl~~a~~kLeeaek~adE~eR~~k~lE~r~~~deEr~~~lE~qLk-eak~~-----------aeeadrKyeE 77 (147)
T 2b9c_A 10 EELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLK-EAKHI-----------AEDADRKYEE 77 (147)
T ss_dssp -CCGGGGTTTTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH-----------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHH-HHHHH-----------HHHHHHhHHH
Confidence 33344567788888888888899999999999999999988888888888774 44433 3444667888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 274 KATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQ 339 (640)
Q Consensus 274 ~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ 339 (640)
...++.-.+..+...-.....++.+|..++.++...-+.|+.|.-....+..+-..|+.++..|..
T Consensus 78 ~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~eekas~rE~~yee~I~~L~~ 143 (147)
T 2b9c_A 78 VARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKVEELLSKNYHLENEVARLKK 143 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888888999999999888888988888888888888888888776643
No 15
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=96.36 E-value=0.75 Score=44.07 Aligned_cols=130 Identities=9% Similarity=0.138 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhHHHHHHHHHHHHHHH
Q 006565 197 TAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKAT 276 (640)
Q Consensus 197 keae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a~L~er~~~~~q~r~~a~ree~~s~le~kE~kie~~k~ 276 (640)
..++..|..+.+-|-.=-|-..-|+++--.+-..+..++.....|++++. .++.. +..+..++..+...++.-+.
T Consensus 9 ~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~-~L~~~----k~~Leke~~~LQa~L~qEr~ 83 (168)
T 3o0z_A 9 SQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNR-ILENS----KSQTDKDYYQLQAILEAERR 83 (168)
T ss_dssp -CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444455555566777763 66666 66666666666666655555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 277 KIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIME 338 (640)
Q Consensus 277 ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~ 338 (640)
.-.+....++. ++++|..+..++..+..++..+......+..++..++++...+.
T Consensus 84 ~r~q~se~~~e-------lq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 84 DRGHDSEMIGD-------LQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 55544444433 34455555555555555555555555555555555555555555
No 16
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=96.23 E-value=0.62 Score=42.53 Aligned_cols=63 Identities=29% Similarity=0.396 Sum_probs=39.7
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 303 EVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVA 365 (640)
Q Consensus 303 e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleea 365 (640)
+.++.....++..|..++.........++.....+.+++..|...+.++..-+....++|..+
T Consensus 12 e~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L 74 (129)
T 2fxo_A 12 EKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQL 74 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 345555666666666666666666666677777777777777666666555555555554443
No 17
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=96.05 E-value=0.66 Score=43.90 Aligned_cols=142 Identities=19% Similarity=0.209 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 270 EMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYK 349 (640)
Q Consensus 270 kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~ 349 (640)
++-.+.+.....+..+...+.++.....+|+.++... .++.. +..+......++..|...+.
T Consensus 7 KLI~Ain~qs~LeD~L~~~R~el~~~~~ri~~lE~~r----~~~~~--------------l~~~~~~~~~e~~~L~~~l~ 68 (154)
T 2ocy_A 7 QLIESVDKQSHLEEQLNKSLKTIASQKAAIENYNQLK----EDYNT--------------LKRELSDRDDEVKRLREDIA 68 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHH----HHHHH--------------HHTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH--------------HHHHHhhhhHHHHHHHHHHH
Confidence 4455556666666666666666666665665555322 22222 22333445555555655665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhh
Q 006565 350 SEFERFEEVQERCKVAEKEAKKAT-ELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRI 428 (640)
Q Consensus 350 se~er~ee~~~rleeaEee~kea~-e~~~~areead~aq~E~~elQr~~~qrlaeIerl~~qIE~lEre~e~Le~E~~~l 428 (640)
.+...-..+.......+.+++... ..++.|...+..++.+-..+++.-.++..++...+..+++++.++..|..=+..+
T Consensus 69 ~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~~~m 148 (154)
T 2ocy_A 69 KENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKVMHSL 148 (154)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556555555566666666665554 3566677777777777777776666666666666677777776666665444443
Q ss_pred c
Q 006565 429 R 429 (640)
Q Consensus 429 ~ 429 (640)
.
T Consensus 149 ~ 149 (154)
T 2ocy_A 149 D 149 (154)
T ss_dssp C
T ss_pred h
Confidence 3
No 18
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.01 E-value=0.21 Score=60.31 Aligned_cols=16 Identities=25% Similarity=0.354 Sum_probs=9.7
Q ss_pred HHHhcCCCCcchhhHH
Q 006565 18 LRAACHSSDASIDNVV 33 (640)
Q Consensus 18 l~~ac~~~~a~~~~~~ 33 (640)
|-..|..|.++=+..+
T Consensus 509 Ldee~~~p~~tD~~f~ 524 (1080)
T 2dfs_A 509 LDEECKMPKGSDDTWA 524 (1080)
T ss_dssp HHHHTTSTTCCHHHHH
T ss_pred ccccccCCCCChHHHH
Confidence 4557777776654443
No 19
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=95.66 E-value=0.35 Score=42.49 Aligned_cols=93 Identities=16% Similarity=0.208 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 219 EWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESK 298 (640)
Q Consensus 219 Ewkrky~~L~~QAKkAeek~a~L~er~~~~~q~r~~a~ree~~s~le~kE~kie~~k~ei~~aEq~la~~q~eL~e~e~k 298 (640)
=|++|+..|..++..|.+++..++... +.++.+ ..++..++.-+..++..+..++..++..+...+..|.+.+..
T Consensus 6 aIKkKm~~lk~e~e~a~drae~~e~~~-k~~e~~----~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~ 80 (101)
T 3u1c_A 6 AIKKKMQMLKLDKENALDRAEQAEADK-KAAEER----SKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEEN 80 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH----HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777777777777777666666 366555 555555555555555555555555555555555555444444
Q ss_pred HhhHHHHHhhHHHHHHHH
Q 006565 299 MRSYEVEISSQKLETKEL 316 (640)
Q Consensus 299 Ik~~e~ei~~le~el~~L 316 (640)
....+.++..+..+|..|
T Consensus 81 ~~~aE~ev~~L~Rriqll 98 (101)
T 3u1c_A 81 AAKAESEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444443
No 20
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=95.63 E-value=1.3 Score=40.69 Aligned_cols=140 Identities=21% Similarity=0.263 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcHHHHHH
Q 006565 356 EEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEA 435 (640)
Q Consensus 356 ee~~~rleeaEee~kea~e~~~~areead~aq~E~~elQr~~~qrlaeIerl~~qIE~lEre~e~Le~E~~~l~~sEl~a 435 (640)
+++...+++.+.++.....-...-+..+|..++....-|+.+..+.++++-+++.++..+..+.+...+..... =.
T Consensus 21 ~s~~~eleEnqeEL~iVgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lkrn~~qQnQQS----lD 96 (167)
T 4gkw_A 21 ESLQKQLEENQEELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLKRNSQQQNQQS----LD 96 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHhHhh----hh
Confidence 33444444444555555555555566667777777777777777777777777777776666544432222111 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 006565 436 LSKVALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQ 507 (640)
Q Consensus 436 l~kv~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~l~e~nrrleal~~e~~~lqs~id~Le 507 (640)
+.++.+|++.+.+.+.-++.| -.||-.|..+|+.++-...+.-.--+.++.+-..++..|..+-
T Consensus 97 iRKLrELEADLKEKDsMVe~L--------T~TiG~LrKELEdEklK~~E~MdSFE~LkvENE~vkerl~mYR 160 (167)
T 4gkw_A 97 MRKLGELEADLKEKDSMVESL--------TETIGILRKELENEKLKAAENMDSFEKLSMENENLKEKIAHYR 160 (167)
T ss_dssp HHHTHHHHHTHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhHHhhhhHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHH
Confidence 444788888888888888888 7888888898888888888877778888888888888887763
No 21
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=95.38 E-value=0.42 Score=41.84 Aligned_cols=93 Identities=16% Similarity=0.250 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 219 EWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESK 298 (640)
Q Consensus 219 Ewkrky~~L~~QAKkAeek~a~L~er~~~~~q~r~~a~ree~~s~le~kE~kie~~k~ei~~aEq~la~~q~eL~e~e~k 298 (640)
=|++|+..|..++..|.+++..++... +.++.+ ..++...+.-+..++..+..++..+...+...+..|...+..
T Consensus 6 ~iKkKm~~lk~e~e~a~d~ae~~e~~~-k~~e~~----~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~ 80 (101)
T 3u59_A 6 AIKKKMQMLKLDKENAIDRAEQAEADK-KQAEDR----CKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKK 80 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH----HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367777777777777777777777776 366666 555555555555555555555555555555555555555555
Q ss_pred HhhHHHHHhhHHHHHHHH
Q 006565 299 MRSYEVEISSQKLETKEL 316 (640)
Q Consensus 299 Ik~~e~ei~~le~el~~L 316 (640)
....+.+...+..+|..|
T Consensus 81 ~~~AE~evasLnRriqll 98 (101)
T 3u59_A 81 ATDAEAEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555555555554443
No 22
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=95.27 E-value=2.1 Score=40.55 Aligned_cols=82 Identities=18% Similarity=0.271 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 006565 400 RMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSK--VALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLES 477 (640)
Q Consensus 400 rlaeIerl~~qIE~lEre~e~Le~E~~~l~~sEl~al~k--v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~ 477 (640)
...++.++...+..-.......+..+.++. .|++.+.- +.+....|..-+.+-..+ ...+.++..++...+..|+.
T Consensus 56 ~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie-~ElEeLTasLFeEAN~MVa~ar~~~~~~-e~r~~~L~~ql~e~~~~l~~ 133 (154)
T 2ocy_A 56 RDDEVKRLREDIAKENELRTKAEEEADKLN-KEVEDLTASLFDEANNMVADARKEKYAI-EILNKRLTEQLREKDTLLDT 133 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555666666677777 77777777 888888888877776666 66666666666666655444
Q ss_pred HHHHHH
Q 006565 478 ERRSRA 483 (640)
Q Consensus 478 ~re~l~ 483 (640)
+..++.
T Consensus 134 lq~ql~ 139 (154)
T 2ocy_A 134 LTLQLK 139 (154)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444333
No 23
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=95.14 E-value=0.42 Score=57.67 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=11.0
Q ss_pred HHHHHHHHhHHHHhhhcHHHHHHHH
Q 006565 413 SLERQKTDLTNEVNRIRESELEALS 437 (640)
Q Consensus 413 ~lEre~e~Le~E~~~l~~sEl~al~ 437 (640)
+++..+.+|+.+...|+ ++++.++
T Consensus 1020 ~L~~kv~~L~~e~~~L~-qq~~~l~ 1043 (1080)
T 2dfs_A 1020 ETEQLVSELKEQNTLLK-TEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 34444444444444444 4444444
No 24
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=94.97 E-value=2.1 Score=38.99 Aligned_cols=99 Identities=19% Similarity=0.231 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 281 AEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQE 360 (640)
Q Consensus 281 aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~ 360 (640)
.+..+..+...+...+...+.++.....+..+...|...+.+-..-+...+.....|......|+.++.....++++...
T Consensus 18 ~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee 97 (129)
T 2fxo_A 18 MKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEE 97 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444445555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 006565 361 RCKVAEKEAKKATELADRE 379 (640)
Q Consensus 361 rleeaEee~kea~e~~~~a 379 (640)
....+....+.+...+...
T Consensus 98 ~~~~L~~~kkkle~e~~~L 116 (129)
T 2fxo_A 98 MNAELTAKKRKLEDECSEL 116 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5544444444444333333
No 25
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=94.63 E-value=1.4 Score=38.56 Aligned_cols=29 Identities=21% Similarity=0.141 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 316 LSEKLEAVNAKAQSFEREARIMEQDKVYL 344 (640)
Q Consensus 316 L~ekle~~~~eies~e~el~~L~~ei~~L 344 (640)
|....+.+..+++.++.++..+......+
T Consensus 14 lk~e~e~a~d~ae~~e~~~k~~e~~~~~~ 42 (101)
T 3u59_A 14 LKLDKENAIDRAEQAEADKKQAEDRCKQL 42 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333333333333333333333333
No 26
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=94.49 E-value=0.22 Score=46.82 Aligned_cols=76 Identities=18% Similarity=0.233 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 006565 201 ARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEH 280 (640)
Q Consensus 201 ~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a~L~er~~~~~q~r~~a~ree~~s~le~kE~kie~~k~ei~~ 280 (640)
+|+.-+.++|+++..-+..--.++..+..-|.-.+-...+|+++.. .-..+ +..++.++++++.-...
T Consensus 3 Rri~llEeeLer~eerl~~a~~kLeeaek~adE~eR~~k~lE~r~~-~deEr-----------~~~lE~qLkeak~~aee 70 (147)
T 2b9c_A 3 RRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQ-KDEEK-----------MEIQEIQLKEAKHIAED 70 (147)
T ss_dssp --------CCGGGGTTTTHHHHHHHHHHHHHHHHTHHHHHHHHHHH-HHHHH-----------HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-ccHHH-----------HHHHHHHHHHHHHHHHH
Confidence 3555566666676666666666666665544444445555665553 33333 33444444444444444
Q ss_pred HHHHHHHH
Q 006565 281 AEQCLTTL 288 (640)
Q Consensus 281 aEq~la~~ 288 (640)
++.++...
T Consensus 71 adrKyeE~ 78 (147)
T 2b9c_A 71 ADRKYEEV 78 (147)
T ss_dssp HHHHHHHH
T ss_pred HHHhHHHH
Confidence 44444433
No 27
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=94.23 E-value=0.99 Score=41.07 Aligned_cols=85 Identities=16% Similarity=0.203 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 006565 203 LAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAE 282 (640)
Q Consensus 203 L~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a~L~er~~~~~q~r~~a~ree~~s~le~kE~kie~~k~ei~~aE 282 (640)
-..-...+..++.++.|.++++..|..+........++|+..+. .++.+-+.....+...+..++..+..++.++..--
T Consensus 24 ~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~-e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql 102 (129)
T 3tnu_B 24 AGRHGDDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIA-DAEQRGELALKDARNKLAELEEALQKAKQDMARLL 102 (129)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 33444677888999999999999999988888888888888885 88888777788888888888888888887776655
Q ss_pred HHHHHH
Q 006565 283 QCLTTL 288 (640)
Q Consensus 283 q~la~~ 288 (640)
+.+..+
T Consensus 103 ~EYq~L 108 (129)
T 3tnu_B 103 REYQEL 108 (129)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 28
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=94.04 E-value=0.91 Score=40.95 Aligned_cols=54 Identities=15% Similarity=0.345 Sum_probs=42.2
Q ss_pred HHhhHHhHHHHHhhHHHHHHHHhHHhhhcchHHhHHhhHHhHHhhhhhhHHHHHHHHHHHhHhhHhhH
Q 006565 116 KRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMED 183 (640)
Q Consensus 116 k~~e~~i~d~kk~~~~~~~~~~~l~~k~~s~ee~~~~l~k~le~~~~e~~ew~~kYe~~~~~~k~~~~ 183 (640)
..|++-|.|+++.++....+.+.|.. +++.++...-+|+.|||.-++....++.
T Consensus 16 ~~ye~~I~~LR~qid~~~~e~a~l~l--------------eldn~~~~~edfk~KyE~E~~~r~~~E~ 69 (119)
T 3ol1_A 16 DLYEEEMRELRRQVDQLTNDKARVEV--------------ERDNLAEDIMRLREKLQEEMLQREEAEN 69 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 45888888888888888888777665 4667778888999999998886665543
No 29
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=93.92 E-value=0.81 Score=41.80 Aligned_cols=86 Identities=19% Similarity=0.217 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 006565 202 RLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHA 281 (640)
Q Consensus 202 RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a~L~er~~~~~q~r~~a~ree~~s~le~kE~kie~~k~ei~~a 281 (640)
--..-...+..++.++.|.++++..|..+........++|+..+. .++.+-+.....+...+..++..+..++.++..-
T Consensus 25 ~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~-e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~q 103 (131)
T 3tnu_A 25 EVATNSELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLE-ETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQ 103 (131)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445678888999999999999999988888888888888885 8888877778888888888888888888877665
Q ss_pred HHHHHHH
Q 006565 282 EQCLTTL 288 (640)
Q Consensus 282 Eq~la~~ 288 (640)
-+.+..+
T Consensus 104 l~EYq~L 110 (131)
T 3tnu_A 104 NQEYKIL 110 (131)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555444
No 30
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=93.66 E-value=3 Score=47.16 Aligned_cols=58 Identities=22% Similarity=0.265 Sum_probs=49.4
Q ss_pred hhhhhHHHHHHHHHHHH-----hcCCCCcchhhHHHHHHHHHHhhhhcc-cCCchHHHHHHHHHH
Q 006565 4 DIRCSSAIQSMERKLRA-----ACHSSDASIDNVVKVLDGLISEYETSC-HGPGKWQKLATFLQQ 62 (640)
Q Consensus 4 ~~~c~~~~~~me~~l~~-----ac~~~~a~~~~~~~~l~~~l~~y~~s~-~G~g~~~k~~~~L~~ 62 (640)
...|.+.|+.|-..|.. .|+.|+. ++.+++.++.++..|+..+ -||.+|.-|..||+.
T Consensus 404 ~~~C~~ll~~l~~~l~~~i~~g~~~~p~g-~~~~~~~~~~~~~~Y~~~~~kg~~~~~vl~~fl~~ 467 (592)
T 1f5n_A 404 SDRCSGLLQVIFSPLEEEVKAGIYSKPGG-YRLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKS 467 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTSSTTH-HHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcCCCCc-HHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 45799999988777665 6777875 8899999999999999999 599999999888874
No 31
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=93.60 E-value=1.3 Score=48.95 Aligned_cols=28 Identities=25% Similarity=0.289 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 265 AEKEEEMKEKATKIEHAEQCLTTLRLEL 292 (640)
Q Consensus 265 e~kE~kie~~k~ei~~aEq~la~~q~eL 292 (640)
..++.++..++.++...++.++.++.++
T Consensus 459 ~~~~~~i~~l~~~~~~~~~~l~~~~~~i 486 (597)
T 3oja_B 459 NELRAEVQQLTNEQIQQEQLLQGLHAEI 486 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444444444444444444444443
No 32
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=93.22 E-value=1.7 Score=47.98 Aligned_cols=34 Identities=12% Similarity=0.139 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 265 AEKEEEMKEKATKIEHAEQCLTTLRLELKAAESK 298 (640)
Q Consensus 265 e~kE~kie~~k~ei~~aEq~la~~q~eL~e~e~k 298 (640)
+.++.++.....++...+.++....+.+.....+
T Consensus 452 e~l~~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~ 485 (597)
T 3oja_B 452 EQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAE 485 (597)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334344444444444444444444444333333
No 33
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=92.06 E-value=4.5 Score=35.43 Aligned_cols=83 Identities=16% Similarity=0.256 Sum_probs=54.7
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhHHH
Q 006565 386 ARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSK--VALLEARVEEREKEIESLLESNNEQ 463 (640)
Q Consensus 386 aq~E~~elQr~~~qrlaeIerl~~qIE~lEre~e~Le~E~~~l~~sEl~al~k--v~~lE~~vee~e~eiE~L~~~~~eq 463 (640)
++.+...++........++.++...+..-.......+..+..+. .|++.|+- +.+....|..-+.+-..+ ...+.+
T Consensus 10 lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie-~ElEeLTasLFeEAN~MVa~ar~e~~~~-e~kn~~ 87 (97)
T 2eqb_B 10 LKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLN-KEVEDLTASLFDEANNMVADARKEKYAI-EILNKR 87 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 34444444444444555555555555666666666666677777 77777777 888888888887777777 777777
Q ss_pred HHHHHHH
Q 006565 464 RASTVKK 470 (640)
Q Consensus 464 ~~~~l~~ 470 (640)
+..+|..
T Consensus 88 L~~qL~d 94 (97)
T 2eqb_B 88 LTEQLRE 94 (97)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 7777754
No 34
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=91.98 E-value=1.6 Score=37.24 Aligned_cols=77 Identities=18% Similarity=0.277 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 006565 404 IERVQRQIESLERQKTDLTNEVNRIRESELEALSK-VALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSR 482 (640)
Q Consensus 404 Ierl~~qIE~lEre~e~Le~E~~~l~~sEl~al~k-v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~l 482 (640)
|..|+++|+.+..+..++.-++.+++ ...+.|.. +..--..-...+.++..| .+......-.--.|+..++++.+.+
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn~~-~~~edfk~KyE~E~~~R~~~E~d~~~L-rkdvD~a~l~r~dLE~kvesL~eEl 79 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDNLA-EDIMRLREKLQEEMLQREEAENTLQSF-RQDVDNASLARLDLERKVESLQEEI 79 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777777777777 66666655 555444555555555555 5555444444444444444444433
No 35
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=91.80 E-value=1.7 Score=37.00 Aligned_cols=72 Identities=19% Similarity=0.262 Sum_probs=52.5
Q ss_pred HHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 291 ELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERC 362 (640)
Q Consensus 291 eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rl 362 (640)
-|..++.||......|..++-++..|.++...+..+.+........|..++..|.+....-..++..+-.++
T Consensus 7 lleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~ 78 (81)
T 2jee_A 7 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRM 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 357788888888888888888888888888888888888666666666666666555555555555544443
No 36
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=91.04 E-value=8.3 Score=34.54 Aligned_cols=103 Identities=18% Similarity=0.218 Sum_probs=64.8
Q ss_pred HHhHHhhHHhHHhhhhhhHHHHHHHHHHHhHhhHhhHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 147 REKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGV 226 (640)
Q Consensus 147 ee~~~~l~k~le~~~~e~~ew~~kYe~~~~~~k~~~~~~AAGIsklK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~ 226 (640)
|-++.-|.........+.-+|+.||.++-++.-.....+=.. +..++..-+...--+.+++-.-|-
T Consensus 2 Ek~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~E--------------l~~lr~~~~~l~~~iReLEq~NDD 67 (111)
T 2v66_B 2 EQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDD--------------LSQTRAIKEQLHKYVRELEQANDD 67 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHhchH
Confidence 345666777777888889999999999776554333333333 333333344444555666777777
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhHHHHHHH
Q 006565 227 AVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKE 268 (640)
Q Consensus 227 L~~QAKkAeek~a~L~er~~~~~q~r~~a~ree~~s~le~kE 268 (640)
|++++..+-.-+..++++.+ .+=++ .+=+..++.+++
T Consensus 68 LER~~R~t~~SLeD~E~k~n-~aiEr----nalLE~El~EKe 104 (111)
T 2v66_B 68 LERAKRATIVSLEDFEQRLN-QAIER----NAFLESELDEKE 104 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHH-HHHHH----HHHHHHHHHHHH
Confidence 77777777777777888886 66666 444444444443
No 37
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=90.04 E-value=8.5 Score=33.69 Aligned_cols=48 Identities=17% Similarity=0.186 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 321 EAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKE 368 (640)
Q Consensus 321 e~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee 368 (640)
+.+..++..++.+......++..|...+..+...-..+......++.+
T Consensus 8 e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~E 55 (97)
T 2eqb_B 8 NQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKE 55 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444333333333333333333333333
No 38
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=90.03 E-value=7.4 Score=35.23 Aligned_cols=44 Identities=18% Similarity=0.265 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHH
Q 006565 394 ENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSK 438 (640)
Q Consensus 394 Qr~~~qrlaeIerl~~qIE~lEre~e~Le~E~~~l~~sEl~al~k 438 (640)
+..+..+.+++..++..+.+.-++...|-+-+.+|. .|+.+..+
T Consensus 81 q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Ld-~EIatYRk 124 (129)
T 3tnu_B 81 RNKLAELEEALQKAKQDMARLLREYQELMNTKLALD-VEIATYRK 124 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 333444445555555555555556666666666666 55554433
No 39
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=89.37 E-value=6.6 Score=35.70 Aligned_cols=44 Identities=9% Similarity=0.194 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHH
Q 006565 394 ENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSK 438 (640)
Q Consensus 394 Qr~~~qrlaeIerl~~qIE~lEre~e~Le~E~~~l~~sEl~al~k 438 (640)
+..+..+.+++..++..+.+.-++...|-+-+.+|. .|+.+..+
T Consensus 83 q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld-~EIatYRk 126 (131)
T 3tnu_A 83 QEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLE-QEIATYRR 126 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 444444555555555555555666666666666666 55555443
No 40
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=89.15 E-value=12 Score=33.51 Aligned_cols=34 Identities=21% Similarity=0.132 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 200 EARLAAAREQALSAQEEVEEWKRKYGVAVREAKA 233 (640)
Q Consensus 200 e~RL~at~enL~RVkDel~Ewkrky~~L~~QAKk 233 (640)
+.|.........+..-++.+|+.||....+++-.
T Consensus 2 Ek~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~ 35 (111)
T 2v66_B 2 EQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYK 35 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888999999999999999997775443
No 41
>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=87.93 E-value=0.6 Score=36.20 Aligned_cols=41 Identities=20% Similarity=0.329 Sum_probs=32.8
Q ss_pred ccCccchhHhhHHHHHHHHHhcCchhhhhhccCCChHHHHHHHHHhh
Q 006565 590 QSNQEDYTKFTVQKLKQELTKHNFGAELLQLRNPNKKEILALYEKCI 636 (640)
Q Consensus 590 ~~~~~~y~k~t~~kl~~el~~~~~g~~l~~l~~~~k~~i~aly~~~~ 636 (640)
.+...||.++||..||.+|..+|+. -+.+|.|+|+--..++
T Consensus 4 ~~s~~~~~klkV~eLK~eLk~RgL~------~~G~Ka~Li~RL~~~~ 44 (50)
T 1zrj_A 4 GSSGMDVRRLKVNELREELQRRGLD------TRGLKAELAERLQAAL 44 (50)
T ss_dssp SSCCCCGGGSCHHHHHHHHHHTTCC------CCSCHHHHHHHHHHHH
T ss_pred ccCcCCHHHCcHHHHHHHHHHcCCC------CCCcHHHHHHHHHHHH
Confidence 3567799999999999999999963 2678999887665553
No 42
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=86.17 E-value=17 Score=38.91 Aligned_cols=23 Identities=9% Similarity=0.289 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 006565 213 AQEEVEEWKRKYGVAVREAKAAL 235 (640)
Q Consensus 213 VkDel~Ewkrky~~L~~QAKkAe 235 (640)
+++.+.++.+.+..-....+...
T Consensus 54 Lqg~Ldk~er~~~~rIe~L~~~L 76 (390)
T 1deq_A 54 MKGLIDEVDQDFTSRINKLRDSL 76 (390)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHH
Confidence 55666666655555444444333
No 43
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=85.85 E-value=1.8 Score=40.08 Aligned_cols=86 Identities=21% Similarity=0.171 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 336 IMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKAT-ELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESL 414 (640)
Q Consensus 336 ~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~kea~-e~~~~areead~aq~E~~elQr~~~qrlaeIerl~~qIE~l 414 (640)
....++..|...+..+...-..+......++.++...+ ..++.|...+..++.+-..+++.-.++..++...+..++++
T Consensus 43 ~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ll~~l 122 (135)
T 2e7s_A 43 DRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLREKDMLLDTL 122 (135)
T ss_dssp THHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHCC---
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444333333333333333333333433332 23444555555555555555555555555555555555555
Q ss_pred HHHHHHh
Q 006565 415 ERQKTDL 421 (640)
Q Consensus 415 Ere~e~L 421 (640)
+.++..|
T Consensus 123 q~QL~~L 129 (135)
T 2e7s_A 123 TLQLKNL 129 (135)
T ss_dssp -------
T ss_pred HHHHHHH
Confidence 5444443
No 44
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=85.67 E-value=14 Score=31.41 Aligned_cols=70 Identities=17% Similarity=0.204 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 006565 439 VALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQE 509 (640)
Q Consensus 439 v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~l~e~nrrleal~~e~~~lqs~id~Leg~ 509 (640)
+..|+.+|...-..|.-| +..+++++.+-..+..+.+..+.......+....++.++..-++.|+.|=|-
T Consensus 8 leqLE~KIq~avdtI~lL-qmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk 77 (81)
T 2jee_A 8 FEKLEAKVQQAIDTITLL-QMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGR 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566777777777777654 7777777777777777777666666666666777777777777777666443
No 45
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=84.96 E-value=1.2 Score=41.17 Aligned_cols=79 Identities=16% Similarity=0.248 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 006565 404 IERVQRQIESLERQKTDLTNEVNRIRESELEALSK--VALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRS 481 (640)
Q Consensus 404 Ierl~~qIE~lEre~e~Le~E~~~l~~sEl~al~k--v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~ 481 (640)
+.++...+..-.......+..+..+. .|++.+.- +.+....|..-+.+-..+ ...+.++..++...+..|++...+
T Consensus 48 ~~~L~~~l~eE~~~R~~aE~~~~~ie-~ElE~LTasLFeEAN~MVa~ar~~~~~~-e~r~~~L~~ql~e~e~ll~~lq~Q 125 (135)
T 2e7s_A 48 VKRLREDIAKENELRTKAEEEADKLN-KEVEDLTASLFDEANNLVADARMEKYAI-EILNKRLTEQLREKDMLLDTLTLQ 125 (135)
T ss_dssp HHTHHHHHHHTTSHHHHHHHTTHHHH-HHHHHHHHHHHHHHHHHHHHTTHHHHHH-HHHHHHHHHTTTHHHHCC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444555566666 66666666 777777787777666666 777777777776666655555444
Q ss_pred HHH
Q 006565 482 RAA 484 (640)
Q Consensus 482 l~e 484 (640)
+..
T Consensus 126 L~~ 128 (135)
T 2e7s_A 126 LKN 128 (135)
T ss_dssp ---
T ss_pred HHH
Confidence 443
No 46
>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A
Probab=84.74 E-value=0.96 Score=35.17 Aligned_cols=38 Identities=34% Similarity=0.362 Sum_probs=30.4
Q ss_pred ccchhHhhHHHHHHHHHhcCchhhhhhccCCChHHHHHHHHHhh
Q 006565 593 QEDYTKFTVQKLKQELTKHNFGAELLQLRNPNKKEILALYEKCI 636 (640)
Q Consensus 593 ~~~y~k~t~~kl~~el~~~~~g~~l~~l~~~~k~~i~aly~~~~ 636 (640)
+.||.++||..||.+|..+|+- -+-+|.|+|+--..+.
T Consensus 2 m~~~~kltV~eLK~~Lk~RGL~------~~G~KadLieRL~~~~ 39 (51)
T 1h1j_S 2 SADYSSLTVVQLKDLLTKRNLS------VGGLKNELVQRLIKDD 39 (51)
T ss_dssp CCSGGGCCHHHHHHHHHHTTCC------CCSSHHHHHHHHHHHH
T ss_pred cchHHHCcHHHHHHHHHHcCCC------CCCcHHHHHHHHHHHH
Confidence 4699999999999999999954 2567888887665554
No 47
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=84.23 E-value=3.3 Score=37.58 Aligned_cols=91 Identities=20% Similarity=0.231 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHhHHHHhhhcHHH----HHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH---HH
Q 006565 409 RQIESLERQKTDLTNEVNRIRESE----LEALSK-VALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESE---RR 480 (640)
Q Consensus 409 ~qIE~lEre~e~Le~E~~~l~~sE----l~al~k-v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~---re 480 (640)
..|+.|.++++.|..++.++. .| +..+.. |..|++.+++.+.....+ ..+++.+...+..+......- ..
T Consensus 15 ~~Ie~Lkreie~lk~ele~l~-~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a-~~e~e~Lr~e~~~l~~~~~~~~~~q~ 92 (120)
T 3i00_A 15 HLIERLYREISGLKAQLENMK-TESQRVVLQLKGHVSELEADLAEQQHLRQQA-ADDCEFLRAELDELRRQREDTEKAQR 92 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHTTCC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 455666666666666666655 44 444555 666777666666665555 555555555555443222111 11
Q ss_pred HHHHHHHHHHHhhHHHHHHHH
Q 006565 481 SRAAANAMAERLSLEVQSAQA 501 (640)
Q Consensus 481 ~l~e~nrrleal~~e~~~lqs 501 (640)
.+.++..++.+-...++-+++
T Consensus 93 ~~~e~E~kAqa~Eerf~KLKe 113 (120)
T 3i00_A 93 SLSEIERKAQANEQRYSKLKE 113 (120)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 234444455444444444443
No 48
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=84.22 E-value=8 Score=42.92 Aligned_cols=25 Identities=12% Similarity=0.130 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 311 LETKELSEKLEAVNAKAQSFEREAR 335 (640)
Q Consensus 311 ~el~~L~ekle~~~~eies~e~el~ 335 (640)
.+|+.|...++.+..+|+.+|..|.
T Consensus 131 snIrvLQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 131 QHIQLLQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 49
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=84.20 E-value=21 Score=31.90 Aligned_cols=29 Identities=7% Similarity=0.173 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 313 TKELSEKLEAVNAKAQSFEREARIMEQDK 341 (640)
Q Consensus 313 l~~L~ekle~~~~eies~e~el~~L~~ei 341 (640)
+..|..++..++.-+.....++..++.++
T Consensus 26 i~~L~~~L~~AEeaL~~Kq~~idelk~ei 54 (110)
T 2v4h_A 26 LEDLRQQLQQAEEALVAKQELIDKLKEEA 54 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444433
No 50
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=83.84 E-value=1.5 Score=49.27 Aligned_cols=112 Identities=11% Similarity=0.159 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 285 LTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKV 364 (640)
Q Consensus 285 la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rlee 364 (640)
...+...|...+...+.....+...+..+..|.++...++.+...++.+...+.+++..|...-....+.-..+..++.+
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~~~~~~~~e~~~l~~~~~~ 416 (575)
T 2i1j_A 337 QQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETKNMEAAERQKLEDEIRA 416 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 33444445555555555555555555666666666666666667777777777777776655544444444445555566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 006565 365 AEKEAKKATELADRERAEAAAARKGKSEFENL 396 (640)
Q Consensus 365 aEee~kea~e~~~~areead~aq~E~~elQr~ 396 (640)
++..+....++.+....++...+.++..++..
T Consensus 417 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~a~~~ 448 (575)
T 2i1j_A 417 KQEEVSRIQQEVELKDSETRRLQEEVEDARRK 448 (575)
T ss_dssp -------------------------CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666655555555555554443
No 51
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=83.64 E-value=24 Score=31.56 Aligned_cols=34 Identities=9% Similarity=0.086 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 262 STLAEKEEEMKEKATKIEHAEQCLTTLRLELKAA 295 (640)
Q Consensus 262 s~le~kE~kie~~k~ei~~aEq~la~~q~eL~e~ 295 (640)
+.++.++..+..+..+-...+-++..++..+..+
T Consensus 20 ~~I~~LR~qid~~~~e~a~l~leldn~~~~~edf 53 (119)
T 3ol1_A 20 EEMRELRRQVDQLTNDKARVEVERDNLAEDIMRL 53 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444443333
No 52
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=82.17 E-value=29 Score=37.22 Aligned_cols=29 Identities=28% Similarity=0.237 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006565 465 ASTVKKLEDLLESERRSRAAANAMAERLS 493 (640)
Q Consensus 465 ~~~l~~le~~le~~re~l~e~nrrleal~ 493 (640)
.++-..++.++++...++..++.++-++-
T Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (487)
T 3oja_A 448 AEENARLKKLNGEADLALASANATLQELV 476 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhhhhhhhhhhHhcccHHHHHH
Confidence 33333344444444444444444444333
No 53
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=81.99 E-value=13 Score=34.22 Aligned_cols=57 Identities=23% Similarity=0.252 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHH
Q 006565 270 EMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAK 326 (640)
Q Consensus 270 kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~e 326 (640)
++..+..++...++++..+..++..+..++.....++..++.++..|..+...++++
T Consensus 76 ~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~ 132 (138)
T 3hnw_A 76 MADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETE 132 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444444444444433
No 54
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=80.95 E-value=27 Score=30.23 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=18.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006565 387 RKGKSEFENLAMERMAVIERVQRQIESLERQKTDL 421 (640)
Q Consensus 387 q~E~~elQr~~~qrlaeIerl~~qIE~lEre~e~L 421 (640)
-.+.+..+...++...+...+.+++.-...+++.|
T Consensus 59 w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL 93 (96)
T 3q8t_A 59 QREYSEFKRQQLELDDELKSVENQMRYAQMQLDKL 93 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555555555555555555555555555544
No 55
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=80.87 E-value=20 Score=32.00 Aligned_cols=43 Identities=14% Similarity=0.176 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 006565 463 QRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDE 505 (640)
Q Consensus 463 q~~~~l~~le~~le~~re~l~e~nrrleal~~e~~~lqs~id~ 505 (640)
-++.++..+..--..+|.+...++.+.+.+..++..+|..+..
T Consensus 66 vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~~ 108 (110)
T 2v4h_A 66 VLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNK 108 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 3466666667777777777777777777777777777776544
No 56
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=80.33 E-value=1.6 Score=49.08 Aligned_cols=111 Identities=14% Similarity=0.276 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 271 MKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKS 350 (640)
Q Consensus 271 ie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~s 350 (640)
..++...+.+.+.+....+.+|...+..+..++.+...++.+...|..+-..+......+......-..+...|..++..
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~~~~~~~~e~~~l~~~~~~ 416 (575)
T 2i1j_A 337 QQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETKNMEAAERQKLEDEIRA 416 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34555677788888888889999999999999999999999999999999999999999888888888888888766666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 351 EFERFEEVQERCKVAEKEAKKATELADRERA 381 (640)
Q Consensus 351 e~er~ee~~~rleeaEee~kea~e~~~~are 381 (640)
.......+....+..+.+......++..|+.
T Consensus 417 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~a~~ 447 (575)
T 2i1j_A 417 KQEEVSRIQQEVELKDSETRRLQEEVEDARR 447 (575)
T ss_dssp -------------------------CHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554444444444433444444444433333
No 57
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=79.59 E-value=34 Score=36.60 Aligned_cols=69 Identities=13% Similarity=0.148 Sum_probs=40.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 006565 260 FSSTLAEKEEEMKEKATKIEHAEQCLTTLRLEL----KAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQ 328 (640)
Q Consensus 260 ~~s~le~kE~kie~~k~ei~~aEq~la~~q~eL----~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eie 328 (640)
...-..+++.++.+.+..|.+++.++++.+... ..++.+....+.+|+.++.+|+.|+.+++.+..+++
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (471)
T 3mq9_A 395 ARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVE 467 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456666777777777777777777776655 334444444444555555555555555555554444
No 58
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=79.48 E-value=30 Score=29.92 Aligned_cols=43 Identities=30% Similarity=0.437 Sum_probs=18.1
Q ss_pred HHHHHHHHhHHHHhhhcHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 006565 413 SLERQKTDLTNEVNRIRESELEALSK-VALLEARVEEREKEIESL 456 (640)
Q Consensus 413 ~lEre~e~Le~E~~~l~~sEl~al~k-v~~lE~~vee~e~eiE~L 456 (640)
.++..+..+..+-.++- .++..+.+ -..+...+...+.+.+.|
T Consensus 8 ~l~~eL~~l~~eE~~L~-~eL~~lEke~~~l~~el~~le~E~~~L 51 (96)
T 3q8t_A 8 QLQRELKELALEEERLI-QELEDVEKNRKVVAENLEKVQAEAERL 51 (96)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444 44444444 444444444444444444
No 59
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=79.35 E-value=27 Score=32.84 Aligned_cols=63 Identities=19% Similarity=0.261 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 282 EQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYL 344 (640)
Q Consensus 282 Eq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L 344 (640)
.+.+..++.++..+..+|+.++.++.....-+..+.+.+.++.-+....+.++..|+.|-..|
T Consensus 67 ~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~L 129 (152)
T 3a7p_A 67 LNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQL 129 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555555555555555555555555555555555444
No 60
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=77.79 E-value=85 Score=34.98 Aligned_cols=42 Identities=10% Similarity=0.115 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 315 ELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFE 356 (640)
Q Consensus 315 ~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~e 356 (640)
.|..++..++.++.+.-..++.|+..|..+..++..++-.++
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555555555555444444443333
No 61
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=77.77 E-value=52 Score=35.23 Aligned_cols=74 Identities=20% Similarity=0.296 Sum_probs=48.7
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 006565 434 EALSK-VALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQ 508 (640)
Q Consensus 434 ~al~k-v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~l~e~nrrleal~~e~~~lqs~id~Leg 508 (640)
+.|++ +..|..+|.+.-..|.-| +..++....+|+.||.-|+.-+.-+...=.+.-+.+.-++..+.+...|++
T Consensus 116 ~eLe~~i~~lk~~V~~q~~~ir~L-q~~l~~q~~kiqRLE~~Id~c~~~C~~sC~~~l~~~vD~e~ye~qqKQL~q 190 (390)
T 1deq_A 116 EDLRSRIEILRRKVIEQVQRINLL-QKNVRDQLVDMKRLEVDIDIKIRSCKGSCSRALEHKVDLEDYKNQQKQLEQ 190 (390)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhccHHHHHHHHHHHHh
Confidence 44555 677777777777777766 888888888888888888766666665555555555444454444444443
No 62
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=76.75 E-value=84 Score=33.61 Aligned_cols=55 Identities=7% Similarity=-0.026 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 320 LEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATE 374 (640)
Q Consensus 320 le~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~kea~e 374 (640)
....+.+.............+++++.++.....+.+.+....+.++...++.|..
T Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (487)
T 3oja_A 423 YVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVV 477 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHH
Confidence 3333334444444444555555555555444555555555555555555444443
No 63
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=74.09 E-value=34 Score=27.85 Aligned_cols=61 Identities=15% Similarity=0.214 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 006565 440 ALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQ 500 (640)
Q Consensus 440 ~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~l~e~nrrleal~~e~~~lq 500 (640)
..++.-+..-..+.+.+.+...+.+...+..-...+..-+..+.+.++.+..|..+++.++
T Consensus 16 aQYE~ia~knr~EaE~~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 16 QQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444444444555666645555666666666666666677777777777776666666554
No 64
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=72.86 E-value=97 Score=32.46 Aligned_cols=255 Identities=11% Similarity=0.133 Sum_probs=0.0
Q ss_pred CCcchhhHH-----HHHHHHHHhhhhcccCCchHHHHHHHHHHhhhchHHHHHHHHH---hHHHhHHHHHHhhhcCchhH
Q 006565 25 SDASIDNVV-----KVLDGLISEYETSCHGPGKWQKLATFLQQSSEGPILDLVKRLI---DQIGSERSSLMLKYRSIEDN 96 (640)
Q Consensus 25 ~~a~~~~~~-----~~l~~~l~~y~~s~~G~g~~~k~~~~L~~~l~~~~~d~~~~~~---~~i~~~~~~l~~~c~s~~~k 96 (640)
||.+|+++. -|...++..|..+=--...|.. .+...|.+.-.+.+ +.+++.+..|--+|. ..++
T Consensus 47 p~v~~s~~~~~~~~~l~~~i~~~~~~ak~hA~~W~d-------~~~p~Iv~~~~~I~~Y~~~f~syy~~L~~~~d-~~d~ 118 (346)
T 2nrj_A 47 PDVNFEGITINGYVDLPGRIVQDQKNARAHAVTWDT-------KVKKQLLDTLNGIVEYDTTFDNYYETMVEAIN-TGDG 118 (346)
T ss_dssp CCCCCSSCCCTTCTTHHHHHHHHHHHHHHHHHHHHH-------THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTCH
T ss_pred CCCCcccCcccchhhhhHHHHHHHHHHHHHHHHHHH-------HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-cchH
Q ss_pred HHHHHHHHHhhHHhHHHHHHHhhHHhHHHHHhhHHHHHHHHhHHhhhcchHHhHHhhHHhHHhhhhhhHHHHHHHHHHHh
Q 006565 97 MKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLT 176 (640)
Q Consensus 97 ~~~~~k~le~~~k~~~~~~k~~e~~i~d~kk~~~~~~~~~~~l~~k~~s~ee~~~~l~k~le~~~~e~~ew~~kYe~~~~ 176 (640)
+.+...|+.+......++..-.+.+.++....+.......+|......+...+..-..-++..+++...+...|. .
T Consensus 119 -~~l~~~L~~L~~~i~~~q~~~~~~~~~L~~F~~~l~~d~~~f~~~~~~l~~~L~~~~~~I~~Lq~eI~~l~~~I~---~ 194 (346)
T 2nrj_A 119 -ETLKEGITDLRGEIQQNQKYAQQLIEELTKLRDSIGHDVRAFGSNKELLQSILKNQGADVDADQKRLEEVLGSVN---Y 194 (346)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTGGGC---G
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHhcccccHHHHHHHHHHHHHHHH---H
Q ss_pred HhhHhhHHH---hhhHH-----------HHhhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 177 KQKAMEDQV---CSEIE-----------VLKSRSTAAEARLAAAREQA---LSAQEEVEEWKRKYGVAVREAKAALEKAA 239 (640)
Q Consensus 177 ~~k~~~~~~---AAGIs-----------klK~Rkkeae~RL~at~enL---~RVkDel~Ewkrky~~L~~QAKkAeek~a 239 (640)
-..-..+.+ +.|+. .+..+...+..++....+++ .+..-.+.-+..++..+......|..-+.
T Consensus 195 ~~~~i~~~~~~~~g~~i~~~i~Ggi~a~~a~k~~~~~~~ei~~l~~~i~~~~~l~~~l~~~~~~~~~l~~~I~~Ai~al~ 274 (346)
T 2nrj_A 195 YKQLESDGFNVMKGAILGLPIIGGIIVGVARDNLGKLEPLLAELRQTVDYKVTLNRVVGVAYSNINEMHKALDDAINALT 274 (346)
T ss_dssp GGCCC--CCGGGTSCEEEEEETTTEEEEEEGGGHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccccccceehhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhhHHHhhhHHHHHHHHhHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 240 IVQERTSKEMQQREDVLREEFSST--------LAEKEEEMKEKATKIEHAEQCLTTLRLEL 292 (640)
Q Consensus 240 ~L~er~~~~~q~r~~a~ree~~s~--------le~kE~kie~~k~ei~~aEq~la~~q~eL 292 (640)
.+...=. .+....+.+...+.+. +.++...++.++..-...-.-...+.+..
T Consensus 275 ~l~~~W~-~m~~~~~~l~~~I~~~~~~i~~~~~~~i~~~L~~a~~~W~~l~~~a~~l~~~~ 334 (346)
T 2nrj_A 275 YMSTQWH-DLDSQYSGVLGHIENAAQKADQNKFKFLKPNLNAAKDSWKTLRTDAVTLKEGI 334 (346)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHTTCCSTTTTGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
No 65
>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=72.70 E-value=3.3 Score=32.66 Aligned_cols=40 Identities=18% Similarity=0.283 Sum_probs=31.7
Q ss_pred cCccchhHhhHHHHHHHHHhcCchhhhhhccCCChHHHHHHHHHhh
Q 006565 591 SNQEDYTKFTVQKLKQELTKHNFGAELLQLRNPNKKEILALYEKCI 636 (640)
Q Consensus 591 ~~~~~y~k~t~~kl~~el~~~~~g~~l~~l~~~~k~~i~aly~~~~ 636 (640)
..+.+|.|+||..||.+|..+|+-. +-+|.|+|.--..++
T Consensus 5 ~~~~~l~klkV~eLK~~L~~rGL~~------~G~KaeLieRL~~~l 44 (55)
T 2do1_A 5 SSGVELHKLKLAELKQECLARGLET------KGIKQDLIHRLQAYL 44 (55)
T ss_dssp CCCCCTTTSCHHHHHHHHHHHTCCC------CSCHHHHHHHHHHHH
T ss_pred ccccCHHHCcHHHHHHHHHHcCCCC------CCcHHHHHHHHHHHH
Confidence 4577899999999999999998531 457889887666554
No 66
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=72.26 E-value=44 Score=28.31 Aligned_cols=44 Identities=16% Similarity=0.159 Sum_probs=22.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 304 VEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQK 347 (640)
Q Consensus 304 ~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ek 347 (640)
.++..+..++..+.+.+.........++.....|.+++..|..+
T Consensus 14 eEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 14 EEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555555555555555555555444
No 67
>1jjr_A KU70, thyroid autoantigen; DNA repair protein, protein-DNA interaction, solution structure, DNA binding protein; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=70.71 E-value=1.4 Score=41.46 Aligned_cols=77 Identities=19% Similarity=0.199 Sum_probs=33.3
Q ss_pred ccccCcchHHhhhhccCCccCCCCCccCCCCCCcccccCCCccccccCccchhHhhHHHHHHHHHhcCchhhhhhcc-CC
Q 006565 545 VQEMDTNDKVLRANKRSRSTTSPLKYTQPEDGGSVFRGDDDNLSQQSNQEDYTKFTVQKLKQELTKHNFGAELLQLR-NP 623 (640)
Q Consensus 545 v~d~~~~~~~~r~~kr~~~t~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~y~k~t~~kl~~el~~~~~g~~l~~l~-~~ 623 (640)
|.+=|.+|...+..|++.+...|.|-..++. .+.+-..--....+.+|||.-||..|+.+| |. +.
T Consensus 17 ~~~~~y~pe~k~~krk~d~~~~paKr~K~e~-------s~~~i~~l~~~g~L~kltV~eLK~~l~~~g-------L~~~G 82 (151)
T 1jjr_A 17 RGSHMASPEGKVTKRKHDNEGSGSKRPKVEY-------SEEELKTHISKGTLGKFTVPMLKEACRAYG-------LKSGL 82 (151)
T ss_dssp ---------------------------CCCC-------SSHHHHHHHHHTCTTSSCHHHHHHHHHHHT-------CCCCS
T ss_pred CCCCCCCccccccccccCCCCCccccccccc-------cHHHHHHHHHcCcHHhccHHHHHHHHHHcC-------CCCcc
Confidence 3445556666554444444444444333321 111122224556789999999999999996 55 67
Q ss_pred ChHHHHHHHHHh
Q 006565 624 NKKEILALYEKC 635 (640)
Q Consensus 624 ~k~~i~aly~~~ 635 (640)
+|.|+|.--..+
T Consensus 83 kKadLI~Ri~~~ 94 (151)
T 1jjr_A 83 KKQELLEALTKH 94 (151)
T ss_dssp SSHHHHHHHHHT
T ss_pred cHHHHHHHHHHH
Confidence 888888766655
No 68
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=69.64 E-value=59 Score=28.67 Aligned_cols=38 Identities=21% Similarity=0.170 Sum_probs=15.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 006565 458 ESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLE 495 (640)
Q Consensus 458 ~~~~eq~~~~l~~le~~le~~re~l~e~nrrleal~~e 495 (640)
+..++.....|..+...++.....=...+.++.++..+
T Consensus 60 k~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~~~l~~E 97 (107)
T 2no2_A 60 KQELATSQRELQVLQGSLETSAQSEANWAAEFAELEKE 97 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334434444444444333333333334444433333
No 69
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=69.59 E-value=67 Score=35.16 Aligned_cols=29 Identities=10% Similarity=0.232 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 212 SAQEEVEEWKRKYGVAVREAKAALEKAAI 240 (640)
Q Consensus 212 RVkDel~Ewkrky~~L~~QAKkAeek~a~ 240 (640)
|+++.+.+|++.+..-.++.+.....+..
T Consensus 51 rLqglL~kqerdv~~rI~kLkn~L~~~s~ 79 (491)
T 1m1j_A 51 RMQGIIDDTDQNYSQRIDNIRQQLADSQN 79 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHhhhhHHHHHHHHHHHHHHHHh
Confidence 56778888888888777766666655544
No 70
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=67.87 E-value=42 Score=29.60 Aligned_cols=75 Identities=13% Similarity=0.097 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 313 TKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAAR 387 (640)
Q Consensus 313 l~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~areead~aq 387 (640)
++.+++++..+=--...+.++-..+.++++-|...++...+-|.++...+.+.-.++...+-.++..+..++..+
T Consensus 4 L~EvEEKyrKAMVsnAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk 78 (103)
T 4h22_A 4 LAEVEEKYKKAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVK 78 (103)
T ss_dssp ----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666677777777777777777766666666666666655555555555555544444433
No 71
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=67.39 E-value=31 Score=28.48 Aligned_cols=56 Identities=25% Similarity=0.230 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 283 QCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLE 345 (640)
Q Consensus 283 q~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ 345 (640)
.-++.++.+|.+++.+|+. ++..+..-....+.++.++-++.=+-+.|.+.+..|+
T Consensus 18 ~~l~~Lr~eL~~Ke~eI~~-------L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~ 73 (75)
T 3a7o_A 18 NTLAILQKELKSKEQEIRR-------LKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLK 73 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHh
Confidence 3566666666666655444 4444444555556666666666666666666555553
No 72
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=66.11 E-value=51 Score=31.00 Aligned_cols=65 Identities=15% Similarity=0.175 Sum_probs=25.2
Q ss_pred HHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 298 KMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERC 362 (640)
Q Consensus 298 kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rl 362 (640)
.|..+..++..++.++..|.+.+..-..-++.+..++..|.-+..++++++.........+-.||
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RW 133 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARW 133 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444333333333333333333333333333333333333333333333
No 73
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=65.41 E-value=62 Score=27.35 Aligned_cols=78 Identities=10% Similarity=0.118 Sum_probs=56.1
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHhHHHHHHHH
Q 006565 190 EVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEE 269 (640)
Q Consensus 190 sklK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~QAKkAeek~a~L~er~~~~~q~r~~a~ree~~s~le~kE~ 269 (640)
..|+.+...+-.-=..+.-+++.+++.+.+++.||+.=.+.-..++..+..+..-++ .+..- +.++.+.++-+..
T Consensus 3 ~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD-~a~l~----r~dLE~kvesL~e 77 (86)
T 3swk_A 3 RELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVD-NASLA----RLDLERKVESLQE 77 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHH-HHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-HHHHH----HHHHHHHHHHHHH
Confidence 344444444444455666788889999999999999998888888888888888876 66665 6666666665555
Q ss_pred HHH
Q 006565 270 EMK 272 (640)
Q Consensus 270 kie 272 (640)
++.
T Consensus 78 El~ 80 (86)
T 3swk_A 78 EIA 80 (86)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 74
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A
Probab=64.15 E-value=2.6 Score=35.29 Aligned_cols=40 Identities=20% Similarity=0.250 Sum_probs=30.6
Q ss_pred cCccchhHhhHHHHHHHHHhcCchhhhhhccCCChHHHHHHHHHhh
Q 006565 591 SNQEDYTKFTVQKLKQELTKHNFGAELLQLRNPNKKEILALYEKCI 636 (640)
Q Consensus 591 ~~~~~y~k~t~~kl~~el~~~~~g~~l~~l~~~~k~~i~aly~~~~ 636 (640)
.-+.+|.++||..||.+|...|+- -+-+|.|+|.--..++
T Consensus 21 ~l~~~l~klkVaeLK~eLk~RGL~------~sG~KaeLIeRL~~~~ 60 (75)
T 2kvu_A 21 ALPANLDDMKVAELKQELKLRSLP------VSGTKTELIERLRAYQ 60 (75)
T ss_dssp SCCTTTTTSCHHHHHHHHHHTTCC------CCSCHHHHHHHHHHHH
T ss_pred cchHHHHHCcHHHHHHHHHHcCCC------CCCCHHHHHHHHHHHH
Confidence 456799999999999999999853 1567888876554443
No 75
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=63.89 E-value=1.4e+02 Score=31.72 Aligned_cols=12 Identities=58% Similarity=0.739 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 006565 445 RVEEREKEIESL 456 (640)
Q Consensus 445 ~vee~e~eiE~L 456 (640)
+|++++.+|..|
T Consensus 444 ~~~~~~~~~~~~ 455 (471)
T 3mq9_A 444 KVEELEGEITTL 455 (471)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 76
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=63.38 E-value=60 Score=28.20 Aligned_cols=29 Identities=7% Similarity=0.173 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 313 TKELSEKLEAVNAKAQSFEREARIMEQDK 341 (640)
Q Consensus 313 l~~L~ekle~~~~eies~e~el~~L~~ei 341 (640)
+..|..++..+..-+......+..|+.++
T Consensus 4 ~~~L~~~L~~aEeaL~~kq~~id~lke~~ 32 (94)
T 3jsv_C 4 LEDLRQQLQQAEEALVAKQELIDKLKEEA 32 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34455555555555555555555555444
No 77
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=62.72 E-value=70 Score=27.05 Aligned_cols=22 Identities=9% Similarity=-0.194 Sum_probs=8.6
Q ss_pred HHHHHHHHHhhHHHHHhhHHHH
Q 006565 291 ELKAAESKMRSYEVEISSQKLE 312 (640)
Q Consensus 291 eL~e~e~kIk~~e~ei~~le~e 312 (640)
...+++.+...+..++..+..+
T Consensus 36 ~rkele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 36 IKKELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333343333444444443333
No 78
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=62.47 E-value=2.1e+02 Score=32.50 Aligned_cols=85 Identities=15% Similarity=0.311 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHhhHHhHHHHHHHhhHHhHHH-HHhhHHHHHHHHhH-----------Hh---------h-----------
Q 006565 95 DNMKLLKKQLEDSERYKSEYLKRYDDAINDK-KKLADDYTSRINNL-----------QG---------E----------- 142 (640)
Q Consensus 95 ~k~~~~~k~le~~~k~~~~~~k~~e~~i~d~-kk~~~~~~~~~~~l-----------~~---------k----------- 142 (640)
.+++.+...++.+.+....++.....-+.+. ..+.+.+...+..+ +. +
T Consensus 366 ~~l~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~v~~~l~~~i~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (695)
T 2j69_A 366 KRIDSVEPEFNKLTGIRDEFQKEIINTRDTQARTISESFRSYVLNLGNTFENDFLRYQPELNLFDFLSSGKREAFNAALQ 445 (695)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTHHHHTTTCCCCCGGGGGSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHhhhHHHHHHHHH
Confidence 3445555555555566666666666666666 55556666555554 00 0
Q ss_pred ---hcchHHhHHhhHHhH--------HhhhhhhHHHHHHHHHHHhHhh
Q 006565 143 ---NISLREKSSSLSKTV--------DSLKNEISDWKRKYDQVLTKQK 179 (640)
Q Consensus 143 ---~~s~ee~~~~l~k~l--------e~~~~e~~ew~~kYe~~~~~~k 179 (640)
...+++++......+ .....+...|-.+|+++++.-.
T Consensus 446 ~~l~~~i~~~f~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (695)
T 2j69_A 446 KAFEQYITDKSAAWTLTAEKDINAAFKELSRSASQYGASYNQITDQIT 493 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 022455555444443 3344567888888888888744
No 79
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=61.55 E-value=77 Score=27.14 Aligned_cols=34 Identities=21% Similarity=0.121 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHH
Q 006565 285 LTTLRLELKAAESKMRSYEVEISSQKLETKELSE 318 (640)
Q Consensus 285 la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~e 318 (640)
+..++..|..+..+.+.++..=..|+.++..+..
T Consensus 11 mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~ 44 (93)
T 3s4r_A 11 LQELNDRFANLIDKVRFLEQQNKILLAELEQLKG 44 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455556666666666555555555555555443
No 80
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=61.39 E-value=53 Score=30.71 Aligned_cols=79 Identities=15% Similarity=0.178 Sum_probs=71.8
Q ss_pred hHHhhHHhHHhhhhhhHHHHHHHHHHHhHhhHhhHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 149 KSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVA 227 (640)
Q Consensus 149 ~~~~l~k~le~~~~e~~ew~~kYe~~~~~~k~~~~~~AAGIsklK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L 227 (640)
....+.++++-+-.--.+|-.+-+.=+.+.+.+..-+...+.-|+....+++.+|.+.+.-++||...-.+++..+.+|
T Consensus 69 ~~e~l~~~veeA~~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~hi~sL 147 (152)
T 4fla_A 69 AAERLSKTVDEACLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKSHIQSL 147 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3567888899999999999999999999999999999999999999999999999999999999999988888876653
No 81
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=59.68 E-value=63 Score=27.80 Aligned_cols=18 Identities=33% Similarity=0.490 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 006565 439 VALLEARVEEREKEIESL 456 (640)
Q Consensus 439 v~~lE~~vee~e~eiE~L 456 (640)
+..++.+++..+..+..|
T Consensus 72 ~~~L~~~~e~ie~~i~~l 89 (117)
T 2zqm_A 72 VAELKEKIETLEVRLNAL 89 (117)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444445555555555544
No 82
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=58.57 E-value=1e+02 Score=27.71 Aligned_cols=75 Identities=16% Similarity=0.226 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 267 KEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRS----YEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDK 341 (640)
Q Consensus 267 kE~kie~~k~ei~~aEq~la~~q~eL~e~e~kIk~----~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei 341 (640)
++.++..+..-+...+-.+++.+...-.+-..+.. -...+..++.+|+.|+.++..+..+++.+.++...+.-.|
T Consensus 30 Lq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~ 108 (121)
T 3mq7_A 30 LQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRI 108 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHh
Confidence 34455555555555565555555444222221111 1333555555555555555555555555555555444433
No 83
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=57.66 E-value=47 Score=28.01 Aligned_cols=16 Identities=19% Similarity=0.227 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 006565 439 VALLEARVEEREKEIE 454 (640)
Q Consensus 439 v~~lE~~vee~e~eiE 454 (640)
+..++..+...+.++.
T Consensus 37 i~~lE~el~~~r~e~~ 52 (86)
T 1x8y_A 37 LAEKEREMAEMRARMQ 52 (86)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444433333
No 84
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=57.65 E-value=87 Score=26.48 Aligned_cols=50 Identities=22% Similarity=0.349 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 006565 280 HAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQS 329 (640)
Q Consensus 280 ~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies 329 (640)
-.-+++..++-.+.+.+++--.|+-+++..+.+|..|...+..-.+++..
T Consensus 23 ~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~r 72 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIER 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHH
Confidence 34444444444444444444444444444444444444444443333333
No 85
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=56.50 E-value=82 Score=27.37 Aligned_cols=37 Identities=32% Similarity=0.282 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhh
Q 006565 478 ERRSRAAANAMAERLSLEVQSAQAKLDEMQQELTKAR 514 (640)
Q Consensus 478 ~re~l~e~nrrleal~~e~~~lqs~id~Leg~~~~~~ 514 (640)
....|++...+++.++.++.-+++.+..+++-+.+.|
T Consensus 60 ~~~~L~e~~~kid~L~~el~K~q~~L~e~e~~~~~~~ 96 (98)
T 2ke4_A 60 LEPQIAETLSNIERLKLEVQKYEAWLAEAESRVLSNR 96 (98)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCC
Confidence 3567788888999999999899999999888766554
No 86
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=55.42 E-value=1.4e+02 Score=33.01 Aligned_cols=101 Identities=13% Similarity=0.235 Sum_probs=64.8
Q ss_pred hHHHHHHHHHHhhHHhHHHHHHHhhHHhHHHHHhhHHHHHHHHhHHhhhcchHHhHHhhHHhHHhhhhhhHHHHHHHHHH
Q 006565 95 DNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQV 174 (640)
Q Consensus 95 ~k~~~~~k~le~~~k~~~~~~k~~e~~i~d~kk~~~~~~~~~~~l~~k~~s~ee~~~~l~k~le~~~~e~~ew~~kYe~~ 174 (640)
++++...+-|+...+-....+..|+.++-+.+.-...+.++. ++.++.-..=+-.|++.
T Consensus 9 ~~la~yq~elarvqkana~aka~Ye~~~ae~~a~n~~i~aeN---------------------eaikkrNa~aka~Ye~~ 67 (497)
T 3iox_A 9 AKLTAYQTELARVQKANADAKAAYEAAVAANNAANAALTAEN---------------------TAIKKRNADAKADYEAK 67 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH---------------------HHHHHHHHHHHHHHHHH
Confidence 355555555555556566666666666666655555444443 33444444445666665
Q ss_pred HhHhhHhhHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 175 LTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRK 223 (640)
Q Consensus 175 ~~~~k~~~~~~AAGIsklK~Rkkeae~RL~at~enL~RVkDel~Ewkrk 223 (640)
+. +|-+-+++|+....+-..+|.+-...+.++++.+.||+++
T Consensus 68 l~-------kY~~dlakY~~~~AeY~~kl~aYe~~~~~~~k~lae~ek~ 109 (497)
T 3iox_A 68 LA-------KYQADLAKYQKDLADYPVKLKAYEDEQTSIKAALAELEKH 109 (497)
T ss_dssp HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44 3556666777777777778888889999999999998864
No 87
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=54.48 E-value=42 Score=25.95 Aligned_cols=44 Identities=11% Similarity=0.129 Sum_probs=32.2
Q ss_pred HHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 183 DQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGV 226 (640)
Q Consensus 183 ~~~AAGIsklK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~ 226 (640)
+.....+...+.+..++-.++..+.++|..+.+.|.+|+.+..+
T Consensus 15 ~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi~~ 58 (60)
T 3htk_A 15 EELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQNEY 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445566666777777788888888888888888888777654
No 88
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=54.04 E-value=63 Score=25.12 Aligned_cols=27 Identities=15% Similarity=0.170 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 465 ASTVKKLEDLLESERRSRAAANAMAER 491 (640)
Q Consensus 465 ~~~l~~le~~le~~re~l~e~nrrlea 491 (640)
.+.|..+...+..-.+.-+++|.|++.
T Consensus 24 ssdV~al~~~v~~ak~eA~RAN~RlDN 50 (52)
T 1jcd_A 24 SNDANAARSDAQAAKDDAARANQRADN 50 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 555555555666666677777877763
No 89
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=53.59 E-value=1e+02 Score=26.12 Aligned_cols=86 Identities=9% Similarity=0.111 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcHHH--------------HHHHHH-HHHHHHHHHHHHHHH
Q 006565 389 GKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESE--------------LEALSK-VALLEARVEEREKEI 453 (640)
Q Consensus 389 E~~elQr~~~qrlaeIerl~~qIE~lEre~e~Le~E~~~l~~sE--------------l~al~k-v~~lE~~vee~e~ei 453 (640)
++...........+++..+..++..++.++..+..-...+..-. ...... +..++.+++..+..+
T Consensus 2 ~~Q~~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~i 81 (107)
T 1fxk_A 2 NVQHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLRE 81 (107)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHhHHHHhccHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhHHHHHHHHHHHHHHH
Q 006565 454 ESLLESNNEQRASTVKKLEDLL 475 (640)
Q Consensus 454 E~L~~~~~eq~~~~l~~le~~l 475 (640)
+.| ......+..++..+...|
T Consensus 82 ~~l-e~~~~~~~~~l~~lk~~l 102 (107)
T 1fxk_A 82 KTI-ERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHHHH
No 90
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=53.55 E-value=47 Score=28.69 Aligned_cols=53 Identities=11% Similarity=0.132 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 006565 400 RMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSK-VALLEARVEEREKEIESL 456 (640)
Q Consensus 400 rlaeIerl~~qIE~lEre~e~Le~E~~~l~~sEl~al~k-v~~lE~~vee~e~eiE~L 456 (640)
+.++|..++.+...++..+..++.. .. .++..+.. +..++..+.....++..-
T Consensus 10 ~~~~~~~Lq~~~~~LE~~l~e~E~~---~~-~e~~~~q~~i~~lE~eL~~~r~e~~~q 63 (95)
T 3mov_A 10 RENLYFQGQKESRACLERIQELEDL---LA-KEKDNSRRMLTDKEREMAEIRDQMQQQ 63 (95)
T ss_dssp --------CCCCHHHHHHHHHHHHH---HH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHH---HH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555444332 22 33344444 444555555555444443
No 91
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein, muscle, Z- LINE, actin-binding protein; 2.8A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1
Probab=52.96 E-value=2.2e+02 Score=29.82 Aligned_cols=344 Identities=9% Similarity=0.082 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCCC--------cchhhHHHHHHHHHHhhhhcccCCchHH-HHHHHHHHhhhchHHHHHHHHHhHHHh
Q 006565 11 IQSMERKLRAACHSSD--------ASIDNVVKVLDGLISEYETSCHGPGKWQ-KLATFLQQSSEGPILDLVKRLIDQIGS 81 (640)
Q Consensus 11 ~~~me~~l~~ac~~~~--------a~~~~~~~~l~~~l~~y~~s~~G~g~~~-k~~~~L~~~l~~~~~d~~~~~~~~i~~ 81 (640)
|..+..+|++.|+.|. ..|...-.-|..+...|+..+.--..=+ +|...+++|..+ +....+-|..
T Consensus 75 ~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~w~~L~~l~~~r~~~l~~~~~R~~~Le~~~~~f~~~-----~~~~~~Wl~e 149 (476)
T 1hci_A 75 FNTLQTKLRISNRPAFMPSEGKMVSDIAGAWQRLEQAEKGYEEWLLNEIRRLERLEHLAEKFRQK-----ASTHETWAYG 149 (476)
T ss_dssp HHHTTTTTTTTTSCCCCCCGGGCSSSHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
Q ss_pred HHHHH-Hhhh-cCchhHHHHHHHHHHhhHHhHHHHHHHhhHHhHHHHHhhHHHHHHHHhHHhhhcchHHhHHhhHHhHHh
Q 006565 82 ERSSL-MLKY-RSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDS 159 (640)
Q Consensus 82 ~~~~l-~~~c-~s~~~k~~~~~k~le~~~k~~~~~~k~~e~~i~d~kk~~~~~~~~~~~l~~k~~s~ee~~~~l~k~le~ 159 (640)
.+..| .--+ -..-+.+..+.+..++++....-+..++..-...-..|.+.--.....++.+|..|.++...|...+.
T Consensus 150 ~e~~l~~~~~~g~dl~~v~~ll~kh~~~~~~l~~~~~~v~~l~~~~~~L~~~~~~~~~~I~~~~~~l~~~W~~L~~~~~- 228 (476)
T 1hci_A 150 KEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQ- 228 (476)
T ss_dssp HHHHHHCCGGGSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHhhcCCccCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCcCcchhHHHHHHHHHHHHHHHHHHHHH-
Q ss_pred hhhhhHHHHHHHHHHHhHhhHhhH---HHhhhHHHHhhhhHHHHHH---------HHHHHHHHHHHHHHH---HHHHHHH
Q 006565 160 LKNEISDWKRKYDQVLTKQKAMED---QVCSEIEVLKSRSTAAEAR---------LAAAREQALSAQEEV---EEWKRKY 224 (640)
Q Consensus 160 ~~~e~~ew~~kYe~~~~~~k~~~~---~~AAGIsklK~Rkkeae~R---------L~at~enL~RVkDel---~Ewkrky 224 (640)
+.+.+-+.++.-.+.... +|...+..|-.=....+.. +..+..-+..-+... .+....+
T Consensus 229 ------~R~~~L~~~~~~~~~~e~l~~~f~~~a~~~~~Wl~~~~~~l~~~~~~~dl~~v~~ll~~h~~~~~~l~~~~~~~ 302 (476)
T 1hci_A 229 ------KRREALERMEKLLETIDQLHLEFAKRAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPEADGER 302 (476)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHH-----------HHHHHHHhhhHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 225 GVAVREAKAALE-----------KAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELK 293 (640)
Q Consensus 225 ~~L~~QAKkAee-----------k~a~L~er~~~~~q~r~~a~ree~~s~le~kE~kie~~k~ei~~aEq~la~~q~eL~ 293 (640)
..+..-...+.. ....+..+.. .+..+ +..+..-+......++.........++-.........
T Consensus 303 ~~~~~l~~~~~~l~~~~~~~~~~~~~~i~~~~~-~L~~~----w~~L~~~~~~R~~~L~~~l~~~~~~~~L~~~F~~~a~ 377 (476)
T 1hci_A 303 QSIMAIQNEVEKVIQSYNIRISSSNPYSTVTMD-ELRTK----WDKVKQLVPIRDQSLQEELARQHANERLRRQFAAQAN 377 (476)
T ss_dssp HHHHHHHHHHHHHHHTTTCCSCSCCTTCSSCHH-HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCcCCCCcchhccHH-HHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q ss_pred HHHHHHhhHHHHHhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
Q 006565 294 AAESKMRSYEVEISSQ----KLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQ-----------KYKSEFERFEEV 358 (640)
Q Consensus 294 e~e~kIk~~e~ei~~l----e~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~e-----------kl~se~er~ee~ 358 (640)
++..=|...+..+... ...+..+-.++.....++..+...+..+..--..+.+ .+.....++..+
T Consensus 378 ~~~~Wl~e~e~~l~~~~~~~~~~le~~l~~~~~~~~el~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~W~~L 457 (476)
T 1hci_A 378 AIGPWIQNKMEEIARSSIQITGALEDQMNQLKQYEHNIINYKNNIDKLEGDHQLIQEALVFDNKHTNYTMEHIRVGWELL 457 (476)
T ss_dssp HHHHHHHHHHHHHHSCSCTTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcccCCCcchhhHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHH
Q 006565 359 QERCKVAEKEAKK 371 (640)
Q Consensus 359 ~~rleeaEee~ke 371 (640)
...+..-...++.
T Consensus 458 ~~~~~~~~~~lE~ 470 (476)
T 1hci_A 458 LTTIARTINEVET 470 (476)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
No 92
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=50.39 E-value=1.6e+02 Score=31.30 Aligned_cols=114 Identities=13% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHHHhhHHhHHHHHhhHHHHHHHHhHHhhhcchH---HhHHhhHHhHHhhhhhhHHHHHHHHHHHhHhhHhhHHHhhhH
Q 006565 113 EYLKRYDDAINDKKKLADDYTSRINNLQGENISLR---EKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEI 189 (640)
Q Consensus 113 ~~~k~~e~~i~d~kk~~~~~~~~~~~l~~k~~s~e---e~~~~l~k~le~~~~e~~ew~~kYe~~~~~~k~~~~~~AAGI 189 (640)
+|.+.|.++..++..+.++|..--..+++|...+| +-...-..|+..-++...+|.-+|...-+.+ +-..+...-
T Consensus 130 e~~~~~~~~~~~~~~~~~~~~~~~~e~~~k~~a~~af~~~~~~f~~q~~~~e~~~~~~~~~~~~~~~~~--e~~~~~~n~ 207 (373)
T 3hhm_B 130 EYNTQFQEKSREYDRLYEEYTRTSQEIQMKRTAIEAFNETIKIFEEQCQTQERYSKEYIEKFKREGNEK--EIQRIMHNY 207 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCS--HHHHHHHHH
T ss_pred HHHHHHHhcccHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcChH--HHHHHHHhH
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 190 EVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAV 228 (640)
Q Consensus 190 sklK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~ 228 (640)
..+|+|..+.......+.++|..-....-++.+++..|.
T Consensus 208 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lk 246 (373)
T 3hhm_B 208 DKLKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIK 246 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
No 93
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=50.25 E-value=1.2e+02 Score=25.91 Aligned_cols=35 Identities=20% Similarity=0.374 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 311 LETKELSEKLEAVNAKAQSFEREARIMEQDKVYLE 345 (640)
Q Consensus 311 ~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ 345 (640)
.+|..|++++.+.-.+...++.+-..|...+..+.
T Consensus 9 e~mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~ 43 (93)
T 3s4r_A 9 VELQELNDRFANLIDKVRFLEQQNKILLAELEQLK 43 (93)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35667777766666666666666666665555553
No 94
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=50.04 E-value=1.3e+02 Score=26.15 Aligned_cols=50 Identities=8% Similarity=0.166 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH---HHHhhHHHHHHHHHHHH
Q 006565 271 MKEKATKIEHAEQCLTTLRLELKAAESKMRSYE---VEISSQKLETKELSEKL 320 (640)
Q Consensus 271 ie~~k~ei~~aEq~la~~q~eL~e~e~kIk~~e---~ei~~le~el~~L~ekl 320 (640)
++.+...+..+++.+...+..+.++...|..+. ..+..++.++.-..+-.
T Consensus 4 ~~~L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF 56 (94)
T 3jsv_C 4 LEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADF 56 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666666655555554444 33444444444443333
No 95
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=49.53 E-value=1.4e+02 Score=28.97 Aligned_cols=108 Identities=9% Similarity=0.148 Sum_probs=71.9
Q ss_pred HHHHHHHhHHhhhcchHHhHHhhHHhHHhhhhhhHHHHHHHHHHHhHhhHhhHHHh--hhHHHHhhhhHHHHHHHHHHHH
Q 006565 131 DYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVC--SEIEVLKSRSTAAEARLAAARE 208 (640)
Q Consensus 131 ~~~~~~~~l~~k~~s~ee~~~~l~k~le~~~~e~~ew~~kYe~~~~~~k~~~~~~A--AGIsklK~Rkkeae~RL~at~e 208 (640)
...+....+-.....+++....+..+|+..+.=..+|..+|.+. +..++..|. +=..+|+.-..++++-+..+.+
T Consensus 73 ~l~s~ae~ll~l~~~Le~~r~~l~~~l~~~~~L~~~~~~k~q~~---~~~ls~~~sp~~L~~~L~~a~~e~eeeS~~l~~ 149 (192)
T 2p22_C 73 AFRDQFKQLEENFEDLHEQKDKVQALLENARILESKYVASWQDY---HSEFSKKYGDIALKKKLEQNTKKLDEESSQLET 149 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555555556667788888899999999999999999999432 012222222 2245566666788888888888
Q ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 209 QALSA--QEEVEEWKRKYGVAVREAKAALEKAAIV 241 (640)
Q Consensus 209 nL~RV--kDel~Ewkrky~~L~~QAKkAeek~a~L 241 (640)
+..-. ...+.+|=++|...-...-.-.++.+..
T Consensus 150 ~F~~~~~e~dv~~Fl~~y~~~R~~yH~RreK~~rw 184 (192)
T 2p22_C 150 TTRSIDSADDLDQFIKNYLDIRTQYHLRREKLATW 184 (192)
T ss_dssp SCSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87664 6788899988887665543333444433
No 96
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=49.28 E-value=1.2e+02 Score=25.54 Aligned_cols=47 Identities=21% Similarity=0.271 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 333 EARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRE 379 (640)
Q Consensus 333 el~~L~~ei~~L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~a 379 (640)
++..++.+...|+.++......++.-..+-..+..+++.+-+..+..
T Consensus 14 klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~K 60 (79)
T 3cvf_A 14 KVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVS 60 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 33334444444444444444444444444444444444444444444
No 97
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=48.70 E-value=1.2e+02 Score=25.57 Aligned_cols=53 Identities=13% Similarity=0.213 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 308 SQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQE 360 (640)
Q Consensus 308 ~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~ 360 (640)
-+-++|+.|.-+...+..+-..|+.++...+.++..|.+.+..-...+.-+..
T Consensus 23 ~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~ 75 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHS 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 45566666777777777777777777777777777776666655554444433
No 98
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=47.55 E-value=1.5e+02 Score=26.39 Aligned_cols=52 Identities=15% Similarity=0.152 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 006565 360 ERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQI 411 (640)
Q Consensus 360 ~rleeaEee~kea~e~~~~areead~aq~E~~elQr~~~qrlaeIerl~~qI 411 (640)
..-++....+......+......+...|.-+..+++.....++++..-+.++
T Consensus 38 ~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt~~Re~V 89 (112)
T 1x79_B 38 QSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVLMQSREQV 89 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455566677777777777777778888888877777776655554433
No 99
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=46.64 E-value=73 Score=23.61 Aligned_cols=43 Identities=30% Similarity=0.353 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 006565 439 VALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSR 482 (640)
Q Consensus 439 v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~l 482 (640)
|..++..|..++.+-+.| ++.+-.-+.-|.-++.+|..+|..+
T Consensus 5 vaqlenevaslenenetl-kkknlhkkdliaylekeianlrkki 47 (49)
T 3he5_A 5 VAQLENEVASLENENETL-KKKNLHKKDLIAYLEKEIANLRKKI 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccHHH-HHhcccHHHHHHHHHHHHHHHHHHh
Confidence 667777777777777777 7777666666666777666666543
No 100
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=46.57 E-value=94 Score=27.26 Aligned_cols=23 Identities=17% Similarity=0.198 Sum_probs=11.5
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Q 006565 485 ANAMAERLSLEVQSAQAKLDEMQ 507 (640)
Q Consensus 485 ~nrrleal~~e~~~lqs~id~Le 507 (640)
....++.++.|...|+..|..|+
T Consensus 73 ~~~~~e~Lq~E~erLr~~v~~lE 95 (100)
T 1go4_E 73 LREDHSQLQAECERLRGLLRAME 95 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444555555555555555444
No 101
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=46.20 E-value=1.3e+02 Score=25.08 Aligned_cols=40 Identities=10% Similarity=0.145 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 006565 439 VALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESER 479 (640)
Q Consensus 439 v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~r 479 (640)
+..++..+...+.++... -.+-..+-+---.|+.+|...|
T Consensus 35 i~~lE~eL~~~r~e~~~q-~~EYq~LlnvK~~Ld~EIatYR 74 (84)
T 1gk4_A 35 IGRLQDEIQNMKEEMARH-LREYQDLLNVKMALDIEIATYR 74 (84)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhHHHHHHHH
Confidence 444444444444444444 2222333333333444444443
No 102
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=46.15 E-value=1.3e+02 Score=25.27 Aligned_cols=32 Identities=9% Similarity=0.010 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 006565 463 QRASTVKKLEDLLESERRSRAAANAMAERLSL 494 (640)
Q Consensus 463 q~~~~l~~le~~le~~re~l~e~nrrleal~~ 494 (640)
++..+|..+..++..+|..+.+.+..++.+..
T Consensus 24 ~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~ 55 (83)
T 2xdj_A 24 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVE 55 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34455555555555555555555555544433
No 103
>3ter_A Mammalian stromal interaction molecule-1; dimer, metal binding protein; 2.55A {Caenorhabditis elegans}
Probab=45.04 E-value=1.6e+02 Score=27.12 Aligned_cols=107 Identities=20% Similarity=0.203 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHHHHH----------HHHHH-HHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 269 EEMKEKATKIEHAEQCLTT----------LRLEL-KAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIM 337 (640)
Q Consensus 269 ~kie~~k~ei~~aEq~la~----------~q~eL-~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L 337 (640)
.+++.++..+..+|+.+.. ++.=| ..++-++..|..+....+.++....+.-+.+.-+-.++=.-+..+
T Consensus 6 ~Ele~lr~aL~~AE~eLe~~~~~w~~p~~Lq~wLq~T~E~E~q~~~~kk~~Aekql~~Ake~~eKlkKKrsSv~gs~~~a 85 (136)
T 3ter_A 6 TEMENLRVQLEEAERRLEANSNGSQAPLALQPLLRRTCENEMAFLEKQRQDCFKEMKEAIEMVDRLQKKQGSVLSSLKLA 85 (136)
T ss_dssp HHHHHHHHHHHHHHHHHC-----CCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCCCC
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHhHHHHHHHHHccccHHHHHHHHHHHHHHHHHhhhchheeeeee
Confidence 4678888889999988866 23333 455555666666666666665555554444443322222111111
Q ss_pred -H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 338 -E--QDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATEL 375 (640)
Q Consensus 338 -~--~ei~~L~ekl~se~er~ee~~~rleeaEee~kea~e~ 375 (640)
- -.++.+..++.++...+.++...+.+--.+|.+++..
T Consensus 86 Hs~~sslD~vD~~Il~Ak~aL~evt~~l~Er~~RW~qIE~L 126 (136)
T 3ter_A 86 TGAASTSDQVDSKIFALKSRMEKIHTLTRETQERWLQIESL 126 (136)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 3556666666666777777777777766666666544
No 104
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=43.21 E-value=78 Score=26.62 Aligned_cols=73 Identities=14% Similarity=0.259 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhhHHhHHHHHHHhhHHhHHHHHhhHHHHHHHHhHHhhhcchHHhHHhhHHhHHhhhhhhHHHHHHHHHHH
Q 006565 96 NMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVL 175 (640)
Q Consensus 96 k~~~~~k~le~~~k~~~~~~k~~e~~i~d~kk~~~~~~~~~~~l~~k~~s~ee~~~~l~k~le~~~~e~~ew~~kYe~~~ 175 (640)
.++.+..+..+++.--.+...+|...+.+++..+....+++ ..++.+..-..+-|...+
T Consensus 4 eie~L~~q~~~Le~~l~e~E~~~~~~l~~~q~~i~~lE~el---------------------~~~r~e~~~ql~EYq~Ll 62 (86)
T 1x8y_A 4 QLSQLQCQLAAKEAKLRDLEDSLARERDTSRRLLAEKEREM---------------------AEMRARMQQQLDEYQELL 62 (86)
T ss_dssp --------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666677776666655555444333 344555555666777777
Q ss_pred hHhhHhhHHHhhhHHHHh
Q 006565 176 TKQKAMEDQVCSEIEVLK 193 (640)
Q Consensus 176 ~~~k~~~~~~AAGIsklK 193 (640)
|=|-++. ..|+-|+
T Consensus 63 nvK~~Le----~EIatYR 76 (86)
T 1x8y_A 63 DIKLALD----MEIHAYR 76 (86)
T ss_dssp HHHHHHH----HHHHHHH
T ss_pred HHHHhhH----HHHHHHH
Confidence 7544433 4555553
No 105
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=42.99 E-value=1.5e+02 Score=27.56 Aligned_cols=76 Identities=18% Similarity=0.352 Sum_probs=59.5
Q ss_pred hhHHHHHHHHHHhhHHhHHHHHHHhhHHhHHHHHhhHHHHHHHHhHHhhhcchHHhHHhhHHhHHhhhhhhHHHHHHHHH
Q 006565 94 EDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQ 173 (640)
Q Consensus 94 ~~k~~~~~k~le~~~k~~~~~~k~~e~~i~d~kk~~~~~~~~~~~l~~k~~s~ee~~~~l~k~le~~~~e~~ew~~kYe~ 173 (640)
-+..+.+.+.++-...+-.+|.+|+++-|.|-+.++. .|++-..+...++..++.-..+|+.+++.
T Consensus 67 k~~~e~l~~~veeA~~~L~eYn~rL~~E~~dR~~L~~--------------~L~~~~~~~~~~l~e~e~~leeyK~Kl~r 132 (152)
T 4fla_A 67 KEAAERLSKTVDEACLLLAEYNGRLAAELEDRRQLAR--------------MLVEYTQNQKDVLSEKEKKLEEYKQKLAR 132 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446677788888888888999999888888777754 46666777788888899999999999998
Q ss_pred HHhHhhHhhH
Q 006565 174 VLTKQKAMED 183 (640)
Q Consensus 174 ~~~~~k~~~~ 183 (640)
+-+-++.+..
T Consensus 133 v~~vkkeL~~ 142 (152)
T 4fla_A 133 VTQVRKELKS 142 (152)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8776666554
No 106
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=41.79 E-value=1.4e+02 Score=26.80 Aligned_cols=64 Identities=22% Similarity=0.264 Sum_probs=32.5
Q ss_pred HHhhhhhhHHHHHHHHHHHhHhhHhhHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 157 VDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVA 227 (640)
Q Consensus 157 le~~~~e~~ew~~kYe~~~~~~k~~~~~~AAGIsklK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L 227 (640)
.|..+.+...|+...+....+.+. -|+.|+.+..++++-|+..+.....+.++...++-....+
T Consensus 17 Ie~Lkreie~lk~ele~l~~E~q~-------~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 17 IERLYREISGLKAQLENMKTESQR-------VVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDEL 80 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555444432 3444444555566666666655555555555555544444
No 107
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=41.36 E-value=1.6e+02 Score=24.69 Aligned_cols=41 Identities=27% Similarity=0.219 Sum_probs=19.2
Q ss_pred HHHHHHhHHHHhhhcHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 006565 415 ERQKTDLTNEVNRIRESELEALSK-VALLEARVEEREKEIESL 456 (640)
Q Consensus 415 Ere~e~Le~E~~~l~~sEl~al~k-v~~lE~~vee~e~eiE~L 456 (640)
-+++++|-.+=..|- .-+.++.- ...|-++|+++-.+.+.|
T Consensus 8 gkevEnLi~EN~eLl-~TKNaLnvvk~DLI~rvdELt~E~e~l 49 (77)
T 2w83_C 8 GREVENLILENTQLL-ETKNALNIVKNDLIAKVDELTCEKDVL 49 (77)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 344444444444444 44444444 444445555544444444
No 108
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=38.86 E-value=1e+02 Score=25.59 Aligned_cols=20 Identities=20% Similarity=0.199 Sum_probs=9.2
Q ss_pred HHHHhhHHHHHHHHHHHHHH
Q 006565 488 MAERLSLEVQSAQAKLDEMQ 507 (640)
Q Consensus 488 rleal~~e~~~lqs~id~Le 507 (640)
+++.+-.++..+++.+|-++
T Consensus 48 ~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 48 ELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 34444444445555555443
No 109
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=38.43 E-value=79 Score=26.31 Aligned_cols=48 Identities=6% Similarity=-0.069 Sum_probs=23.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 302 YEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYK 349 (640)
Q Consensus 302 ~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L~ekl~ 349 (640)
++..|..++.++.+...-.+.++..+.....++..|...+..|.+++.
T Consensus 12 le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~ 59 (78)
T 3efg_A 12 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLG 59 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555555555555555555555555555554444433
No 110
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=38.38 E-value=1.8e+02 Score=24.40 Aligned_cols=66 Identities=20% Similarity=0.267 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHhHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 006565 408 QRQIESLERQKTDLTNEVNRIRESELEALSKVALLEARVEEREKEIESLLESNNEQRASTVKKLEDL 474 (640)
Q Consensus 408 ~~qIE~lEre~e~Le~E~~~l~~sEl~al~kv~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~ 474 (640)
...++++-.+-..|-.-+..+.+--.+=+.+|.+|....+-+..+++.+ .........++..++.+
T Consensus 8 gkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~-~~~~~r~~~ri~elEeE 73 (77)
T 2w83_C 8 GREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAV-KQAKLKLEEKNRELEEE 73 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHC------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555322333333555555555555555555 44444444554444443
No 111
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=38.35 E-value=3.3e+02 Score=29.31 Aligned_cols=32 Identities=13% Similarity=0.013 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 319 KLEAVNAKAQSFEREARIMEQDKVYLEQKYKS 350 (640)
Q Consensus 319 kle~~~~eies~e~el~~L~~ei~~L~ekl~s 350 (640)
+...+..++..++..+......|..|+..+.+
T Consensus 85 ~skkml~~~~~~e~~~~~~~~~i~~l~~~~~~ 116 (409)
T 1m1j_C 85 KSKKIIEEIIRYENTILAHENTIQQLTDMHIM 116 (409)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh
Confidence 33334444444444444444444444443333
No 112
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=37.27 E-value=1.6e+02 Score=23.67 Aligned_cols=61 Identities=18% Similarity=0.257 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhHhhHhhHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 166 DWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAK 232 (640)
Q Consensus 166 ew~~kYe~~~~~~k~~~~~~AAGIsklK~Rkkeae~RL~at~enL~RVkDel~Ewkrky~~L~~QAK 232 (640)
|-+.-||...+..+..-+. -|+.+..++-.--..-...|..++.++.|.++++..|..+-.
T Consensus 13 eiRaQYE~ia~knr~EaE~------~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~ 73 (77)
T 3trt_A 13 DVRQQYESVAAKNLQEAEE------WYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVD 73 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHH------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677777766655443 344454454444455556788888899999999888876543
No 113
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=37.07 E-value=86 Score=24.50 Aligned_cols=34 Identities=32% Similarity=0.313 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 006565 446 VEEREKEIESLLESNNEQRASTVKKLEDLLESERR 480 (640)
Q Consensus 446 vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re 480 (640)
+.+++.+++.| ...+..+..+|..|..++..++.
T Consensus 24 ~~~Le~~~~~L-~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 24 VQSLEKKAEDL-SSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444 44444445555555555544443
No 114
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=36.80 E-value=2.4e+02 Score=25.44 Aligned_cols=32 Identities=25% Similarity=0.286 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 263 TLAEKEEEMKEKATKIEHAEQCLTTLRLELKA 294 (640)
Q Consensus 263 ~le~kE~kie~~k~ei~~aEq~la~~q~eL~e 294 (640)
.+.+++.+|..+..++..+..++..++++...
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~ 103 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVERLRRENQV 103 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Confidence 34445555555555555555444444444433
No 115
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=36.42 E-value=2e+02 Score=24.36 Aligned_cols=44 Identities=23% Similarity=0.333 Sum_probs=25.0
Q ss_pred HHHHHHHHHhHHHHhhhcHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 006565 412 ESLERQKTDLTNEVNRIRESELEALSK-VALLEARVEEREKEIESL 456 (640)
Q Consensus 412 E~lEre~e~Le~E~~~l~~sEl~al~k-v~~lE~~vee~e~eiE~L 456 (640)
+.--+-+..+..++.+.+ +..-++.+ +.+.+.+-.++..+++.|
T Consensus 20 eaEIqAKQ~i~EELs~vr-~~ni~~eskL~eae~rn~eL~~e~~~l 64 (81)
T 1wt6_A 20 EEEVLTRQSLSREMEAIR-TDNQNFASQLREAEARNRDLEAHVRQL 64 (81)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344555666666666 55444444 666666666666665555
No 116
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=36.01 E-value=4.8e+02 Score=28.80 Aligned_cols=34 Identities=26% Similarity=0.300 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 200 EARLAAAREQALSAQEEVEEWKRKYGVAVREAKA 233 (640)
Q Consensus 200 e~RL~at~enL~RVkDel~Ewkrky~~L~~QAKk 233 (640)
.++|.+-...|.||+.-=.+-+.-|+..+..-++
T Consensus 8 q~~la~yq~elarvqkana~aka~Ye~~~ae~~a 41 (497)
T 3iox_A 8 QAKLTAYQTELARVQKANADAKAAYEAAVAANNA 41 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4677888888888877766666666555444333
No 117
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=35.77 E-value=47 Score=27.25 Aligned_cols=13 Identities=31% Similarity=0.491 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 006565 406 RVQRQIESLERQK 418 (640)
Q Consensus 406 rl~~qIE~lEre~ 418 (640)
|-+.+|..|+.++
T Consensus 26 RK~~~i~~LE~~v 38 (70)
T 1gd2_E 26 RKEDHLKALETQV 38 (70)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333334443333
No 118
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=35.50 E-value=2.3e+02 Score=24.94 Aligned_cols=47 Identities=11% Similarity=0.203 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 337 MEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEA 383 (640)
Q Consensus 337 L~~ei~~L~ekl~se~er~ee~~~rleeaEee~kea~e~~~~areea 383 (640)
|.+++..+..++....-++++..+.+..+.+++.+....+...+-..
T Consensus 21 LDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~ 67 (103)
T 4h22_A 21 LDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAH 67 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445445444444444444444444444444433333333333
No 119
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=35.43 E-value=4.8e+02 Score=28.61 Aligned_cols=35 Identities=17% Similarity=0.152 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 330 FEREARIMEQDKVYLEQKYKSEFERFEEVQERCKV 364 (640)
Q Consensus 330 ~e~el~~L~~ei~~L~ekl~se~er~ee~~~rlee 364 (640)
+...+..|++.+..+.+...+...-+-.+...|..
T Consensus 63 v~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~ 97 (491)
T 1m1j_A 63 YSQRIDNIRQQLADSQNKYKTSNRVIVETINILKP 97 (491)
T ss_dssp HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 33445555555555544444444444444444444
No 120
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=34.44 E-value=2.8e+02 Score=25.54 Aligned_cols=25 Identities=8% Similarity=-0.061 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH
Q 006565 378 RERAEAAAARKGKSEFENLAMERMA 402 (640)
Q Consensus 378 ~areead~aq~E~~elQr~~~qrla 402 (640)
.-+.++...|.|...+|+..-....
T Consensus 57 ~HQKEi~~Lrae~~~~QRn~~K~~~ 81 (167)
T 4gkw_A 57 AHQKEIGKLRAELGTAQRNLEKADQ 81 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3344455556666666666543333
No 121
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=33.08 E-value=1e+02 Score=25.64 Aligned_cols=43 Identities=14% Similarity=0.105 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 006565 465 ASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQ 507 (640)
Q Consensus 465 ~~~l~~le~~le~~re~l~e~nrrleal~~e~~~lqs~id~Le 507 (640)
..++.-.+.-|+++-..++...+.++.+..++..+..++..++
T Consensus 20 E~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 20 ETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333334444444444445555555555555555555544443
No 122
>2out_A MU-like prophage flumu protein GP35, protein HI1507 in MU-like prophage flumu region...; structural genomics, hypothetical protein; NMR {Haemophilus influenzae} SCOP: a.140.3.2 d.344.1.1
Probab=32.19 E-value=20 Score=32.89 Aligned_cols=40 Identities=30% Similarity=0.501 Sum_probs=33.3
Q ss_pred cCccchhHhhHHHHHHHHHhcCchhhhhhccCCChHHHHHHHHH
Q 006565 591 SNQEDYTKFTVQKLKQELTKHNFGAELLQLRNPNKKEILALYEK 634 (640)
Q Consensus 591 ~~~~~y~k~t~~kl~~el~~~~~g~~l~~l~~~~k~~i~aly~~ 634 (640)
..+.++.++||..||..|.+.|.-. -.+.+|-|++||++-
T Consensus 84 ~~~~~l~~lTV~ELKa~Lde~gIe~----~ssakKaELiaLL~~ 123 (131)
T 2out_A 84 PPSTDLNTFTVEQLKAQLTERGITF----KQSATKAELIALFAP 123 (131)
T ss_dssp CCCCSSTTCCSHHHHHHHHHHTCCC----SSSCCSHHHHHHCCS
T ss_pred cccCccccccHHHHHHHHHHcCCcc----cccCCHHHHHHHHHH
Confidence 4578999999999999999998642 358899999999754
No 123
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=31.55 E-value=2.4e+02 Score=24.63 Aligned_cols=32 Identities=22% Similarity=0.377 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 319 KLEAVNAKAQSFEREARIMEQDKVYLEQKYKS 350 (640)
Q Consensus 319 kle~~~~eies~e~el~~L~~ei~~L~ekl~s 350 (640)
.+..+..+++.++.+-..|..++..|+-+++-
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555444433
No 124
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=31.09 E-value=3.8e+02 Score=28.77 Aligned_cols=6 Identities=50% Similarity=0.933 Sum_probs=4.0
Q ss_pred hcCchh
Q 006565 610 KHNFGA 615 (640)
Q Consensus 610 ~~~~g~ 615 (640)
+.|||.
T Consensus 212 k~GFG~ 217 (409)
T 1m1j_C 212 KEGFGH 217 (409)
T ss_dssp HHCEEE
T ss_pred HhhhCC
Confidence 467875
No 125
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=30.05 E-value=32 Score=23.37 Aligned_cols=25 Identities=32% Similarity=0.453 Sum_probs=21.4
Q ss_pred HHHHhhhcCchhHHHHHHHHHHhhH
Q 006565 84 SSLMLKYRSIEDNMKLLKKQLEDSE 108 (640)
Q Consensus 84 ~~l~~~c~s~~~k~~~~~k~le~~~ 108 (640)
..|.-+|-+.+.|+..|.|.||+++
T Consensus 4 ealekkcaalesklqalekkleale 28 (31)
T 3ljm_A 4 EALEKKCAALESKLQALEKKLEALE 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466789999999999999999986
No 126
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=29.76 E-value=31 Score=23.40 Aligned_cols=26 Identities=23% Similarity=0.404 Sum_probs=22.1
Q ss_pred HhHHhhhcchHHhHHhhHHhHHhhhh
Q 006565 137 NNLQGENISLREKSSSLSKTVDSLKN 162 (640)
Q Consensus 137 ~~l~~k~~s~ee~~~~l~k~le~~~~ 162 (640)
..|..||-.||-++.-|.|.|++.++
T Consensus 4 ealekkcaalesklqalekklealeh 29 (31)
T 3ljm_A 4 EALEKKCAALESKLQALEKKLEALEH 29 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 46888999999999999999988764
No 127
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=29.43 E-value=1.5e+02 Score=23.38 Aligned_cols=19 Identities=21% Similarity=0.282 Sum_probs=7.7
Q ss_pred HhhHHHHHHHHHHHHHHHH
Q 006565 458 ESNNEQRASTVKKLEDLLE 476 (640)
Q Consensus 458 ~~~~eq~~~~l~~le~~le 476 (640)
...+..+..+|..|+.++.
T Consensus 36 ~~~N~~L~~~i~~L~~E~~ 54 (63)
T 1ci6_A 36 EKKNEALKERADSLAKEIQ 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444333
No 128
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=29.30 E-value=3.8e+02 Score=25.50 Aligned_cols=118 Identities=14% Similarity=0.198 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHH-HHHHHHHHHHHHH----------------H
Q 006565 390 KSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSK-VALLEARVEEREK----------------E 452 (640)
Q Consensus 390 ~~elQr~~~qrlaeIerl~~qIE~lEre~e~Le~E~~~l~~sEl~al~k-v~~lE~~vee~e~----------------e 452 (640)
+..+-+.+....++.-..-+.-+.+--..+.+..++.-.+ +=++||.. +..-+..+..++. +
T Consensus 12 ve~v~~~L~e~h~qy~~ks~~yd~l~e~y~r~sqEiq~Kr-~AieAF~E~ik~FeeQ~~~qer~~~~~~~~f~~e~~~~E 90 (170)
T 3l4q_C 12 VEAVGAQLKVYHQQYQDKSREYDQLYEEYTRTSQELQMKR-TAIEAFNETIKIFEEQGQTQEKSSKEYLERFRREGNEKE 90 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHSSSTTGGGSSSSSCCCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcCHHH
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 006565 453 IESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQE 509 (640)
Q Consensus 453 iE~L~~~~~eq~~~~l~~le~~le~~re~l~e~nrrleal~~e~~~lqs~id~Leg~ 509 (640)
++.+ ....+.+.+.|..+......+.+.+.......-.+--++++++..|-.|...
T Consensus 91 ~~~l-~~N~e~LksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~qL~K~ 146 (170)
T 3l4q_C 91 MQRI-LLNSERLKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLMQLRKI 146 (170)
T ss_dssp TTTT-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
No 129
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=29.07 E-value=1.1e+02 Score=32.73 Aligned_cols=54 Identities=13% Similarity=0.127 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 006565 446 VEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQ 500 (640)
Q Consensus 446 vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~l~e~nrrleal~~e~~~lq 500 (640)
++..+.++..| ++...++...++.++..+..+.+.+...+..-..+-|+++.++
T Consensus 5 ~~~~~~~~~~l-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elk 58 (403)
T 4etp_A 5 IAALKEKIAAL-KEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELR 58 (403)
T ss_dssp CHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34445555555 5555555666666666666666666666555555555544443
No 130
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=28.90 E-value=2.5e+02 Score=26.02 Aligned_cols=78 Identities=12% Similarity=0.185 Sum_probs=41.8
Q ss_pred HHhHHhhhcchHHhHHhhHHhHHhhhhhhHHHHHHHHHHHhHhhHhhHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 006565 136 INNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQE 215 (640)
Q Consensus 136 ~~~l~~k~~s~ee~~~~l~k~le~~~~e~~ew~~kYe~~~~~~k~~~~~~AAGIsklK~Rkkeae~RL~at~enL~RVkD 215 (640)
+-.|....-.+=.++.-|..+|+.......+|+ .++.+.++..+. -.--.| .+.-.||..++.-|..++.
T Consensus 61 Yk~Lhaev~~v~~~F~~Ld~~L~~l~~~s~e~~----~i~~EY~r~k~~--K~dp~y----~ekK~Rc~yL~~KLsHIK~ 130 (140)
T 1xaw_A 61 YKSLQSVLDEINKELSRLDKELDDYREESEEYM----AAADEYNRLKQV--KGSADY----KSKKNHCKQLKSKLSHIKK 130 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCTTSHHHH----HHHHHHHHHHHH--HTSHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH----HHHHHHHHHHHh--cCCcHH----HHHHHHHHHHHHHHHHHHH
Confidence 334444444444455555555555555666665 222222222110 001112 2334489999999999999
Q ss_pred HHHHHHHH
Q 006565 216 EVEEWKRK 223 (640)
Q Consensus 216 el~Ewkrk 223 (640)
.+.+|.+.
T Consensus 131 lI~~YD~~ 138 (140)
T 1xaw_A 131 MVGDYDRQ 138 (140)
T ss_dssp HHHHHHHH
T ss_pred HHHhhhcc
Confidence 99999763
No 131
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=28.85 E-value=2.5e+02 Score=23.20 Aligned_cols=35 Identities=6% Similarity=-0.035 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 312 ETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQ 346 (640)
Q Consensus 312 el~~L~ekle~~~~eies~e~el~~L~~ei~~L~e 346 (640)
+|.....+-..+..++.++-..+..=-.++.++++
T Consensus 29 ~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq 63 (72)
T 3cve_A 29 RLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRD 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 33333333333333333333333333333333333
No 132
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=27.49 E-value=3.5e+02 Score=24.55 Aligned_cols=20 Identities=35% Similarity=0.547 Sum_probs=7.6
Q ss_pred HHHHH-HHHHHHHHHHHHHHH
Q 006565 434 EALSK-VALLEARVEEREKEI 453 (640)
Q Consensus 434 ~al~k-v~~lE~~vee~e~ei 453 (640)
.++.. +....+.++..+.++
T Consensus 99 e~le~~la~KkAEleKtqa~L 119 (125)
T 2pms_C 99 EGLEKTIAAKKAELEKTEADL 119 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 33333 333333333333333
No 133
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=26.98 E-value=3.2e+02 Score=26.46 Aligned_cols=39 Identities=15% Similarity=0.206 Sum_probs=17.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 304 VEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKV 342 (640)
Q Consensus 304 ~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~ 342 (640)
.-+..+..+...|...++....++..+.+++..++....
T Consensus 20 ~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~ 58 (190)
T 4emc_A 20 LLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVK 58 (190)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 334444444444444444444444444444444444443
No 134
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=26.78 E-value=1.8e+02 Score=22.83 Aligned_cols=9 Identities=11% Similarity=0.239 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 006565 465 ASTVKKLED 473 (640)
Q Consensus 465 ~~~l~~le~ 473 (640)
..+|..|..
T Consensus 43 ~~ei~~L~~ 51 (63)
T 2wt7_A 43 QTEIANLLK 51 (63)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 135
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=26.73 E-value=2.2e+02 Score=21.88 Aligned_cols=41 Identities=15% Similarity=0.143 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 324 NAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKV 364 (640)
Q Consensus 324 ~~eies~e~el~~L~~ei~~L~ekl~se~er~ee~~~rlee 364 (640)
-++++..++....|+.+|+.|+..+.....++..+...++.
T Consensus 4 ~~~aefAERsV~KLek~ID~LEdeL~~eKek~~~i~~eLD~ 44 (52)
T 2z5i_A 4 LSKNYHLENEVARLKKLVDDLEDELYAQKLKYKAISEELDH 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 35566677777778888888877777777777776666654
No 136
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=26.72 E-value=1.6e+02 Score=25.51 Aligned_cols=67 Identities=16% Similarity=0.124 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 273 EKATKIEHAEQCLTTLRLEL-KAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKV 342 (640)
Q Consensus 273 ~~k~ei~~aEq~la~~q~eL-~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~ 342 (640)
-++.+|...-+.++.++..- .+++-+|....+++...++-+-.|+..+..++. .|+.++..|+.++.
T Consensus 18 ~ir~Efe~~~~e~~~~k~q~~~eyE~ki~~Qi~Emq~Ir~tvyeLE~~h~kmKq---~YEeEI~rLr~eLe 85 (92)
T 3vp9_A 18 AIRQEFLQVSQEANTYRLQNQKDYDFKMNQQLAEMQQIRNTVYERELTHRKMKD---AYEEEIKHLKLGLE 85 (92)
T ss_dssp CTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 34455555555665555444 477777888888888888888777777766653 46666666666654
No 137
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=26.63 E-value=50 Score=33.45 Aligned_cols=41 Identities=7% Similarity=0.089 Sum_probs=23.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 304 VEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYL 344 (640)
Q Consensus 304 ~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L 344 (640)
..+..++.++..|..+.+.+...+..+..++..|+.+++.|
T Consensus 54 ~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL 94 (251)
T 3m9b_A 54 RDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 94 (251)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555566666666666666666666666666665555
No 138
>1jjr_A KU70, thyroid autoantigen; DNA repair protein, protein-DNA interaction, solution structure, DNA binding protein; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=26.42 E-value=14 Score=34.78 Aligned_cols=37 Identities=30% Similarity=0.373 Sum_probs=0.0
Q ss_pred CccchhHhhHHHHHHHHHhcCchhhhhhcc-CCChHHHHHHHHHh
Q 006565 592 NQEDYTKFTVQKLKQELTKHNFGAELLQLR-NPNKKEILALYEKC 635 (640)
Q Consensus 592 ~~~~y~k~t~~kl~~el~~~~~g~~l~~l~-~~~k~~i~aly~~~ 635 (640)
....+.++||..||..|..|| |. +.+|.|+|.--+.+
T Consensus 111 ~~g~l~klTV~~Lk~~l~~~g-------l~~~GkKaeLieRi~~~ 148 (151)
T 1jjr_A 111 SKGTLGKFTVPMLKEACRAYG-------LKSGLKKQELLEALTKH 148 (151)
T ss_dssp ---------------------------------------------
T ss_pred hcCccccccHHHHHHHHHHcC-------CCCCCcHHHHHHHHHHH
Confidence 445789999999999999997 44 67888888654433
No 139
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=26.38 E-value=2.2e+02 Score=26.02 Aligned_cols=91 Identities=10% Similarity=0.081 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 285 LTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQS----FEREARIMEQDKVYLEQKYKSEFERFEEVQE 360 (640)
Q Consensus 285 la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies----~e~el~~L~~ei~~L~ekl~se~er~ee~~~ 360 (640)
+.++-.+|.+..+++...+.+...++.+...+..++..+.++++. +.-.+..|.-....++..+.-+...-.+...
T Consensus 4 vtSL~~ELqEsqskL~~Ae~~k~~Leek~~~~e~~~~~~~~Elee~kqq~~~~~d~L~lQ~esmeaalkmEr~~~~eEKr 83 (130)
T 3cl3_D 4 ASGSLGELQESQSRLEAATKECQALEGRARAASEQARQLESEREALQQQHSVQVDQLRMQGQSVEAALRMERQAASEEKR 83 (130)
T ss_dssp -----------------------------------------------CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777777788888888888888877777777755 3334455555555555555544444444444
Q ss_pred HHHHHHHHHHHHHHH
Q 006565 361 RCKVAEKEAKKATEL 375 (640)
Q Consensus 361 rleeaEee~kea~e~ 375 (640)
++..++-.+...-.+
T Consensus 84 kLAqLQ~AY~~Lfqe 98 (130)
T 3cl3_D 84 KLAQLQVAYHQLFQE 98 (130)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444333333
No 140
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=26.03 E-value=1.2e+02 Score=26.11 Aligned_cols=77 Identities=14% Similarity=0.206 Sum_probs=36.9
Q ss_pred CchhHHHHHHHHHHhhHHhHHHHHHHhhHHhHHHHHhhHHHHHHHHhHHhhhcchHHhHHhhHHhHHhhhhhhHHHHHHH
Q 006565 92 SIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKY 171 (640)
Q Consensus 92 s~~~k~~~~~k~le~~~k~~~~~~k~~e~~i~d~kk~~~~~~~~~~~l~~k~~s~ee~~~~l~k~le~~~~e~~ew~~kY 171 (640)
|.+.++..|.++..+++.--.+...+|...+.+++..+....++ |..++.+..--.+-|
T Consensus 9 ~~~~~~~~Lq~~~~~LE~~l~e~E~~~~~e~~~~q~~i~~lE~e---------------------L~~~r~e~~~ql~EY 67 (95)
T 3mov_A 9 SRENLYFQGQKESRACLERIQELEDLLAKEKDNSRRMLTDKERE---------------------MAEIRDQMQQQLNDY 67 (95)
T ss_dssp ---------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHH
T ss_pred cHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHH
Confidence 34455666666666666655666666665555554443333333 333445555556677
Q ss_pred HHHHhHhhHhhHHHhhhHHHHh
Q 006565 172 DQVLTKQKAMEDQVCSEIEVLK 193 (640)
Q Consensus 172 e~~~~~~k~~~~~~AAGIsklK 193 (640)
...+|-+-++. ..|+.|.
T Consensus 68 q~LlnvKl~Le----~EIatYr 85 (95)
T 3mov_A 68 EQLLDVKLALD----MEISAYR 85 (95)
T ss_dssp HHHHHHHHHHH----HHHHHHH
T ss_pred HHHHHHHHHHH----HHHHHHH
Confidence 77777554443 4555553
No 141
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=25.99 E-value=2.7e+02 Score=26.96 Aligned_cols=47 Identities=6% Similarity=0.096 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 439 VALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAAN 486 (640)
Q Consensus 439 v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~l~e~n 486 (640)
...++.+++.....+..| +.++.-+..++.....+|+.++++++.++
T Consensus 8 K~~~q~ql~~ad~LV~~L-~~En~~L~~ql~~k~~ei~~L~~ql~sl~ 54 (190)
T 4emc_A 8 KNSVKQQIDSADLLVANL-VNENFVLSEKLDTKATEIKQLQKQIDSLN 54 (190)
T ss_dssp ------------CHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555 55444444454444444444444444333
No 142
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Probab=25.77 E-value=4.8e+02 Score=25.58 Aligned_cols=33 Identities=9% Similarity=0.001 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 312 ETKELSEKLEAVNAKAQSFEREARIMEQDKVYL 344 (640)
Q Consensus 312 el~~L~ekle~~~~eies~e~el~~L~~ei~~L 344 (640)
.+..+-.++..+..+|......+..+...=..|
T Consensus 253 ~~e~ll~~h~~l~~ei~~~~~~~~~l~~~g~~L 285 (323)
T 3edv_A 253 SVELLMNNHQGIKAEIDARNDSFTTCIELGKSL 285 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666666666555444433
No 143
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=25.68 E-value=7.4e+02 Score=27.71 Aligned_cols=51 Identities=16% Similarity=0.135 Sum_probs=24.2
Q ss_pred hhcCchhH---HHHHHHHHHhhHHhHHHHHHHhhHHhHHH-HHhhHHHHHHHHhHH
Q 006565 89 KYRSIEDN---MKLLKKQLEDSERYKSEYLKRYDDAINDK-KKLADDYTSRINNLQ 140 (640)
Q Consensus 89 ~c~s~~~k---~~~~~k~le~~~k~~~~~~k~~e~~i~d~-kk~~~~~~~~~~~l~ 140 (640)
.|.-|-+. +..+|...+. ..+..|-..++.+...++ ++|.+.+...+.++.
T Consensus 342 ~~~~P~~~~~eL~~~H~~~~~-~Al~~F~~~~~~d~~~~~~~~L~~~i~~~~~~~~ 396 (592)
T 1f5n_A 342 KVQLPTESLQELLDLHRDSER-EAIEVFIRSSFKDVDHLFQKELAAQLEKKRDDFC 396 (592)
T ss_dssp HCCSSCSSHHHHHHHHHHHHH-HHHHHHHHHCCCCGGGHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHHHH-HHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 35556554 3334433221 134445445555444444 556666555555543
No 144
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=25.54 E-value=3.4e+02 Score=23.70 Aligned_cols=64 Identities=19% Similarity=0.313 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 275 ATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIME 338 (640)
Q Consensus 275 k~ei~~aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~ 338 (640)
.+-|..--..++.....|.+....++...-.|....++|+.+..+.+.+-+++=.++.++..++
T Consensus 40 tqaI~~NS~aiaanTr~lQqh~aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~ar~k 103 (114)
T 2xzr_A 40 TQSIEKNSKAIAANTRTLQQHSARLDSQQRQINENHKEMKQIEDKIEEILSKIYHIENEIARIK 103 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhchHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3334444444555555565666666666666666666666666666666665555555544443
No 145
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=23.81 E-value=1.8e+02 Score=30.98 Aligned_cols=47 Identities=17% Similarity=0.166 Sum_probs=18.7
Q ss_pred HHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 298 KMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYL 344 (640)
Q Consensus 298 kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L 344 (640)
+|..+..++..++..+..+...+..+..++...+...+.|-.++.+|
T Consensus 11 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~el 57 (403)
T 4etp_A 11 KIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQEL 57 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33333333333333333333333333444444444444444444444
No 146
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=23.75 E-value=2.2e+02 Score=22.06 Aligned_cols=31 Identities=16% Similarity=0.325 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 314 KELSEKLEAVNAKAQSFEREARIMEQDKVYL 344 (640)
Q Consensus 314 ~~L~ekle~~~~eies~e~el~~L~~ei~~L 344 (640)
..|..+...+..+-..+..++..|..++..|
T Consensus 25 ~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~L 55 (61)
T 1t2k_D 25 QSLEKKAEDLSSLNGQLQSEVTLLRNEVAQL 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444444444444444
No 147
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=23.30 E-value=7.2e+02 Score=26.74 Aligned_cols=26 Identities=15% Similarity=0.280 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 323 VNAKAQSFEREARIMEQDKVYLEQKY 348 (640)
Q Consensus 323 ~~~eies~e~el~~L~~ei~~L~ekl 348 (640)
.-+++..++.-+......|..|+..+
T Consensus 89 ml~~~~~~~~~~~~~~~~i~~l~~~~ 114 (411)
T 3ghg_C 89 MLEEIMKYEASILTHDSSIRYLQEIY 114 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 33333334444444444444443333
No 148
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=22.97 E-value=85 Score=24.65 Aligned_cols=20 Identities=25% Similarity=0.345 Sum_probs=8.4
Q ss_pred HhhHHHHHHHHHHHHHHHHH
Q 006565 458 ESNNEQRASTVKKLEDLLES 477 (640)
Q Consensus 458 ~~~~eq~~~~l~~le~~le~ 477 (640)
...+..+..+|..|..++..
T Consensus 35 ~~~n~~L~~~v~~L~~e~~~ 54 (62)
T 1jnm_A 35 KAQNSELASTANMLREQVAQ 54 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444433
No 149
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=22.07 E-value=5.3e+02 Score=24.74 Aligned_cols=52 Identities=12% Similarity=0.303 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhh--cHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 006565 404 IERVQRQIESLERQKTDLTNEVNRI--RESELEALSK-VALLEARVEEREKEIESL 456 (640)
Q Consensus 404 Ierl~~qIE~lEre~e~Le~E~~~l--~~sEl~al~k-v~~lE~~vee~e~eiE~L 456 (640)
..+++..+...+.+++.+....-.- . .+++.|-+ +...-....-|+...+.+
T Consensus 130 ~~~L~~a~~e~eeeS~~l~~~F~~~~~e-~dv~~Fl~~y~~~R~~yH~RreK~~rw 184 (192)
T 2p22_C 130 KKKLEQNTKKLDEESSQLETTTRSIDSA-DDLDQFIKNYLDIRTQYHLRREKLATW 184 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCSCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccc-chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777788888888887777553 3 57778776 777777777777777766
No 150
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=21.90 E-value=3.3e+02 Score=22.33 Aligned_cols=50 Identities=12% Similarity=0.175 Sum_probs=29.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcHHHHHHHHH
Q 006565 388 KGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSK 438 (640)
Q Consensus 388 ~E~~elQr~~~qrlaeIerl~~qIE~lEre~e~Le~E~~~l~~sEl~al~k 438 (640)
.|....|..+..+.+++..++..+++.-++...|-+-+.+|. .|+.+..+
T Consensus 5 ~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le-~EIatYRk 54 (74)
T 2xv5_A 5 RERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALD-MEIHAYRK 54 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 344455555666666666666666666666666666666666 55555544
No 151
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=21.31 E-value=9.4e+02 Score=27.33 Aligned_cols=22 Identities=9% Similarity=0.134 Sum_probs=12.0
Q ss_pred HHHhhhhHHHHHHHHHHHHHHH
Q 006565 190 EVLKSRSTAAEARLAAAREQAL 211 (640)
Q Consensus 190 sklK~Rkkeae~RL~at~enL~ 211 (640)
..|.....+.+.-+..+...|.
T Consensus 373 ~~F~~~~~~~~~Wl~~~e~~l~ 394 (863)
T 1sjj_A 373 EKFRQKASIHESWTDGKEAMLQ 394 (863)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4555555555555555555444
No 152
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=20.64 E-value=57 Score=24.23 Aligned_cols=15 Identities=27% Similarity=0.840 Sum_probs=12.5
Q ss_pred cCCchHHHHHHHHHH
Q 006565 48 HGPGKWQKLATFLQQ 62 (640)
Q Consensus 48 ~G~g~~~k~~~~L~~ 62 (640)
+|++.|...+.+|..
T Consensus 21 ~G~~~W~~Ia~~~~~ 35 (52)
T 1guu_A 21 NGTDDWKVIANYLPN 35 (52)
T ss_dssp HCSSCHHHHHHTSTT
T ss_pred hCCCCHHHHHHHcCC
Confidence 499999999998754
No 153
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=20.28 E-value=2.8e+02 Score=20.77 Aligned_cols=38 Identities=24% Similarity=0.272 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 449 REKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANA 487 (640)
Q Consensus 449 ~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~l~e~nr 487 (640)
+++.|-.| ++++-|+...-++|+..|..+|..++....
T Consensus 8 lrkkiarl-kkdnlqlerdeqnlekiianlrdeiarlen 45 (52)
T 3he5_B 8 LRKKIARL-KKDNLQLERDEQNLEKIIANLRDEIARLEN 45 (52)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-hhhhhhhhhhHhhHHHHHHHHHHHHHHHHH
Confidence 45666777 888888888888899999888888876554
No 154
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=20.14 E-value=3.8e+02 Score=23.67 Aligned_cols=64 Identities=20% Similarity=0.250 Sum_probs=0.0
Q ss_pred HHHhHHHHhhhcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 418 KTDLTNEVNRIRESELEALSK-VALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAA 485 (640)
Q Consensus 418 ~e~Le~E~~~l~~sEl~al~k-v~~lE~~vee~e~eiE~L~~~~~eq~~~~l~~le~~le~~re~l~e~ 485 (640)
++.|+.++...+ +++-.-.. +...+..++.---++. +....+|+..|..++..|..++.+++.+
T Consensus 37 ieeLQ~Ei~~~E-~QL~iArQKLkdAe~~~E~DPDevN---K~tl~~R~~~Vsalq~KiaeLKrqLAd~ 101 (107)
T 2k48_A 37 LQELQENITAHE-QQLVTARQKLKDAEKAVEVDPDDVN---KSTLQNRRAAVSTLETKLGELKRQLADL 101 (107)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCcHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 155
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=20.12 E-value=6.3e+02 Score=24.87 Aligned_cols=64 Identities=13% Similarity=0.272 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006565 281 AEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYL 344 (640)
Q Consensus 281 aEq~la~~q~eL~e~e~kIk~~e~ei~~le~el~~L~ekle~~~~eies~e~el~~L~~ei~~L 344 (640)
-|.+++..+.++...+.+|...+..+..++-++...+.+...+..++..+..++......|..|
T Consensus 82 He~rI~a~~a~l~dHE~RIt~~~~~ia~~e~Rit~~e~~i~~l~~~v~~ld~~vt~~et~Isal 145 (242)
T 3c9i_A 82 HEARIKQLRIDVDDHESRITANTKAITALNVRVTTAEGEIASLQTNVSALDGRVTTAENNISAL 145 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhcccccHHHHhhhhhhhhhhhhheeecccccchhhhhhhhhhcccccccccchhhh
Confidence 3444555555555555555555555555555555554444444444444444554444444444
Done!