Your job contains 1 sequence.
>006566
MATGTLPASFPGLKSRDSGLGFAKSVDFVRVCDFRKFKSGRRRFTVIRNSSNSSSDIAEL
QPASEGSPLLVPRQKYCESIHKTVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGT
VEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAE
CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNH
GSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEM
YVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRL
ANLGMRAAELQQGVAPFEEKHRHYFDFQRRSGQLPIQKEGEEVDYRGVLHRDGSVLMSVS
LDQLKAPELLYKSLAAKLVVGMPFKDLATVDSILLRELPSVDDHDARLALKRLVDISMGV
ITPLSEQLTKPLPHAMVLVNLQELSTGAYKLLPEGTRLVVSLRGDESYEELEILKDIDAT
MILHDLPFNEDKIGRVQAARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGA
LLVDGLGDGLLLEAPGQDFDFLRDTSFNLLQGVCLMSIMW
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 006566
(640 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2175851 - symbol:HDS "4-hydroxy-3-methylbut-2-... 2776 5.0e-289 1
GENEDB_PFALCIPARUM|PF10_0221 - symbol:PF10_0221 "GcpE pro... 857 1.1e-85 1
UNIPROTKB|Q8IJH7 - symbol:PF10_0221 "GcpE protein" specie... 857 1.1e-85 1
UNIPROTKB|P73672 - symbol:ispG "4-hydroxy-3-methylbut-2-e... 696 1.3e-68 1
UNIPROTKB|Q8DK70 - symbol:ispG "4-hydroxy-3-methylbut-2-e... 681 5.1e-67 1
UNIPROTKB|Q81LV7 - symbol:ispG "4-hydroxy-3-methylbut-2-e... 271 3.1e-45 2
TIGR_CMR|BA_4502 - symbol:BA_4502 "gcpE protein" species:... 271 3.1e-45 2
UNIPROTKB|O33350 - symbol:ispG "4-hydroxy-3-methylbut-2-e... 280 2.4e-42 2
TIGR_CMR|CHY_1776 - symbol:CHY_1776 "1-hydroxy-2-methyl-2... 268 2.7e-40 2
TIGR_CMR|SPO_2594 - symbol:SPO_2594 "1-hydroxy-2-methyl-2... 264 2.7e-39 2
UNIPROTKB|Q9KTX1 - symbol:ispG "4-hydroxy-3-methylbut-2-e... 260 1.8e-38 2
TIGR_CMR|VC_0759 - symbol:VC_0759 "gcpE protein" species:... 260 1.8e-38 2
TIGR_CMR|GSU_1459 - symbol:GSU_1459 "1-hydroxy-2-methyl-2... 256 5.1e-38 2
TIGR_CMR|SO_3312 - symbol:SO_3312 "1-hydroxy-2-methyl-2-(... 253 1.8e-37 2
TIGR_CMR|CJE_0785 - symbol:CJE_0785 "1-hydroxy-2-methyl-2... 238 4.9e-35 2
TIGR_CMR|DET_0369 - symbol:DET_0369 "1-hydroxy-2-methyl-2... 219 1.6e-25 2
UNIPROTKB|P62620 - symbol:ispG "1-hydroxy-2-methyl-2-(E)-... 260 3.2e-20 1
TIGR_CMR|ECH_0559 - symbol:ECH_0559 "4-hydroxy-3-methylbu... 256 2.8e-19 1
TIGR_CMR|CPS_4252 - symbol:CPS_4252 "1-hydroxy-2-methyl-2... 248 1.3e-18 1
TIGR_CMR|NSE_0799 - symbol:NSE_0799 "1-hydroxy-2-methyl-2... 246 4.4e-18 1
TIGR_CMR|APH_0442 - symbol:APH_0442 "4-hydroxy-3-methylbu... 237 4.0e-17 1
>TAIR|locus:2175851 [details] [associations]
symbol:HDS "4-hydroxy-3-methylbut-2-enyl diphosphate
synthase" species:3702 "Arabidopsis thaliana" [GO:0005506 "iron ion
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008299 "isoprenoid biosynthetic process" evidence=IEA;ISS]
[GO:0016114 "terpenoid biosynthetic process" evidence=IEA]
[GO:0044237 "cellular metabolic process" evidence=IEA] [GO:0046429
"4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity"
evidence=IEA;IGI;ISS;IDA] [GO:0055114 "oxidation-reduction process"
evidence=IEA] [GO:0009507 "chloroplast" evidence=IDA] [GO:0009941
"chloroplast envelope" evidence=IDA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA;TAS] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IDA] [GO:0009617 "response to bacterium" evidence=IMP]
[GO:0009862 "systemic acquired resistance, salicylic acid mediated
signaling pathway" evidence=RCA;IMP] [GO:0009570 "chloroplast
stroma" evidence=IDA] [GO:0000096 "sulfur amino acid metabolic
process" evidence=RCA] [GO:0000165 "MAPK cascade" evidence=RCA]
[GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0006417
"regulation of translation" evidence=RCA] [GO:0006546 "glycine
catabolic process" evidence=RCA] [GO:0006612 "protein targeting to
membrane" evidence=RCA] [GO:0006636 "unsaturated fatty acid
biosynthetic process" evidence=RCA] [GO:0006655
"phosphatidylglycerol biosynthetic process" evidence=RCA]
[GO:0006733 "oxidoreduction coenzyme metabolic process"
evidence=RCA] [GO:0006766 "vitamin metabolic process" evidence=RCA]
[GO:0008652 "cellular amino acid biosynthetic process"
evidence=RCA] [GO:0009072 "aromatic amino acid family metabolic
process" evidence=RCA] [GO:0009106 "lipoate metabolic process"
evidence=RCA] [GO:0009108 "coenzyme biosynthetic process"
evidence=RCA] [GO:0009117 "nucleotide metabolic process"
evidence=RCA] [GO:0009409 "response to cold" evidence=RCA]
[GO:0009416 "response to light stimulus" evidence=RCA] [GO:0009595
"detection of biotic stimulus" evidence=RCA] [GO:0009637 "response
to blue light" evidence=RCA] [GO:0009644 "response to high light
intensity" evidence=RCA] [GO:0009657 "plastid organization"
evidence=RCA] [GO:0009695 "jasmonic acid biosynthetic process"
evidence=RCA] [GO:0009697 "salicylic acid biosynthetic process"
evidence=RCA] [GO:0009744 "response to sucrose stimulus"
evidence=RCA] [GO:0009814 "defense response, incompatible
interaction" evidence=RCA] [GO:0009867 "jasmonic acid mediated
signaling pathway" evidence=RCA] [GO:0010114 "response to red
light" evidence=RCA] [GO:0010155 "regulation of proton transport"
evidence=RCA] [GO:0010200 "response to chitin" evidence=RCA]
[GO:0010218 "response to far red light" evidence=RCA] [GO:0010304
"PSII associated light-harvesting complex II catabolic process"
evidence=RCA] [GO:0010310 "regulation of hydrogen peroxide
metabolic process" evidence=RCA] [GO:0010363 "regulation of
plant-type hypersensitive response" evidence=RCA] [GO:0015994
"chlorophyll metabolic process" evidence=RCA] [GO:0015995
"chlorophyll biosynthetic process" evidence=RCA] [GO:0016117
"carotenoid biosynthetic process" evidence=RCA] [GO:0019216
"regulation of lipid metabolic process" evidence=RCA] [GO:0019252
"starch biosynthetic process" evidence=RCA] [GO:0019684
"photosynthesis, light reaction" evidence=RCA] [GO:0019748
"secondary metabolic process" evidence=RCA] [GO:0019760
"glucosinolate metabolic process" evidence=RCA] [GO:0031348
"negative regulation of defense response" evidence=RCA] [GO:0031408
"oxylipin biosynthetic process" evidence=RCA] [GO:0042742 "defense
response to bacterium" evidence=RCA] [GO:0043900 "regulation of
multi-organism process" evidence=RCA] [GO:0044272 "sulfur compound
biosynthetic process" evidence=RCA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0050832 "defense response to fungus" evidence=RCA]
InterPro:IPR004588 InterPro:IPR017178 Pfam:PF04551
PIRSF:PIRSF037336 UniPathway:UPA00056 EMBL:CP002688 GO:GO:0009570
GO:GO:0009617 GO:GO:0005506 GO:GO:0009941 GO:GO:0051539
EMBL:AB005246 GO:GO:0016114 GO:GO:0009862 GO:GO:0005351
GO:GO:0009401 GO:GO:0019288 EMBL:AF434673 EMBL:AY081261
EMBL:AY094472 EMBL:BT010473 IPI:IPI00530209 RefSeq:NP_200868.2
RefSeq:NP_851233.1 UniGene:At.21376 UniGene:At.72025
ProteinModelPortal:F4K0E8 PRIDE:F4K0E8 EnsemblPlants:AT5G60600.1
GeneID:836181 KEGG:ath:AT5G60600 TAIR:At5g60600 KO:K03526
OMA:SMRIGTN ProtClustDB:PLN02925 BioCyc:ARA:AT5G60600-MONOMER
BioCyc:MetaCyc:AT5G60600-MONOMER GO:GO:0046429 TIGRFAMs:TIGR00612
Uniprot:F4K0E8
Length = 741
Score = 2776 (982.3 bits), Expect = 5.0e-289, P = 5.0e-289
Identities = 533/636 (83%), Positives = 580/636 (91%)
Query: 1 MATGTLPASFPGLKSRDSGLGFAKSVDFVRVCDFRKFKSGRRRFTVIRNSSNSSSDIAEL 60
MATG LPA G+K DS +GF KS++ VR+CD R +S RRR +VIRNS N SD+AEL
Sbjct: 1 MATGVLPAPVSGIKIPDSKVGFGKSMNLVRICDVRSLRSARRRVSVIRNS-NQGSDLAEL 59
Query: 61 QPASEGSPLLVPRQKYCESIHKTVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGT 120
QPASEGSPLLVPRQKYCES+HKTVRRKTRTVMVGNVA+GSEHPIR+QTMTT+DTKD+ GT
Sbjct: 60 QPASEGSPLLVPRQKYCESLHKTVRRKTRTVMVGNVALGSEHPIRIQTMTTSDTKDITGT 119
Query: 121 VEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAE 180
V+EVMRIAD+GAD+VRITVQGK+EADACFEIK+ LVQ NYNIPLVADIHFAP+VALRVAE
Sbjct: 120 VDEVMRIADKGADIVRITVQGKKEADACFEIKDKLVQLNYNIPLVADIHFAPTVALRVAE 179
Query: 181 CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNH 240
CFDKIRVNPGNFADRRAQFE ++YT+DEYQKELQHIE+VF+PLVEKCKKYGRA+RIGTNH
Sbjct: 180 CFDKIRVNPGNFADRRAQFETIDYTEDEYQKELQHIEQVFTPLVEKCKKYGRAMRIGTNH 239
Query: 241 GSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEM 300
GSLSDRIMSYYGDSPRGMVESAFEFARICRKLD+HNF+FSMKASNPV+MVQAYRLLVAEM
Sbjct: 240 GSLSDRIMSYYGDSPRGMVESAFEFARICRKLDYHNFVFSMKASNPVIMVQAYRLLVAEM 299
Query: 301 YVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRL 360
YVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPE+EIDPCRRL
Sbjct: 300 YVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEEEIDPCRRL 359
Query: 361 ANLGMRAAELQQGVAPFEEKHRHYFDFQRRSGQLPIQKEGEEVDYRGVLHRDGSVLMSVS 420
ANLG +AA+LQQGVAPFEEKHRHYFDFQRR+G LP+QKEGEEVDYR VLHRDGSVLMS+S
Sbjct: 360 ANLGTKAAKLQQGVAPFEEKHRHYFDFQRRTGDLPVQKEGEEVDYRNVLHRDGSVLMSIS 419
Query: 421 LDQLKAPELLYKSLAAKLVVGMPFKDLATVDSILLRELPSVDDHDARLALKRLVDISMGV 480
LDQLKAPELLY+SLA KLVVGMPFKDLATVDSILLRELP VDD ARLALKRL+D+SMGV
Sbjct: 420 LDQLKAPELLYRSLATKLVVGMPFKDLATVDSILLRELPPVDDQVARLALKRLIDVSMGV 479
Query: 481 ITPLSEQLTKPLPHAMVLVNLQELSTGAYKLLPEGTRLVVSLRGDESYEELEILKDIDAT 540
I PLSEQLTKPLP+AMVLVNL+ELS GAYKLLPEGTRLVVSLRGDE YEELEILK+IDAT
Sbjct: 480 IAPLSEQLTKPLPNAMVLVNLKELSGGAYKLLPEGTRLVVSLRGDEPYEELEILKNIDAT 539
Query: 541 MILHDLPFNEDKIGRVQAARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNXXX 600
MILHD+PF EDK+ RV AARRLFE+LSEN++NFPVIHHI FP GIHRD+LVI AGT
Sbjct: 540 MILHDVPFTEDKVSRVHAARRLFEFLSENSVNFPVIHHINFPTGIHRDELVIHAGTYAGG 599
Query: 601 XXXXXXXXXXXXEAPGQDFDFLRDTSFNLLQGVCLM 636
EAP QDFDFLR+TSFNLLQG C M
Sbjct: 600 LLVDGLGDGVMLEAPDQDFDFLRNTSFNLLQG-CRM 634
>GENEDB_PFALCIPARUM|PF10_0221 [details] [associations]
symbol:PF10_0221 "GcpE protein" species:5833
"Plasmodium falciparum" [GO:0020011 "apicoplast" evidence=IDA]
[GO:0003674 "molecular_function" evidence=ND] HAMAP:MF_00159
InterPro:IPR004588 InterPro:IPR017178 Pfam:PF04551
PIRSF:PIRSF037336 GO:GO:0005506 GO:GO:0016114 EMBL:AE014185
GO:GO:0020011 KO:K03526 OMA:SMRIGTN GO:GO:0046429
TIGRFAMs:TIGR00612 RefSeq:XP_001347505.1 ProteinModelPortal:Q8IJH7
IntAct:Q8IJH7 MINT:MINT-1651685 EnsemblProtists:PF10_0221:mRNA
GeneID:810378 KEGG:pfa:PF10_0221 EuPathDB:PlasmoDB:PF3D7_1022800
HOGENOM:HOG000261018 ProtClustDB:CLSZ2433456 Uniprot:Q8IJH7
Length = 824
Score = 857 (306.7 bits), Expect = 1.1e-85, P = 1.1e-85
Identities = 183/447 (40%), Positives = 280/447 (62%)
Query: 44 FTVIRNSSNSSSDIAELQPASEGSPLLVPRQKYCESIHKTVRRKTRTVMVGNVAIGSEHP 103
++++ NSS + E ++ +KYCE K R TR V++GNV IG +
Sbjct: 77 YSLLNEEGNSSKKEYKNLKDEEKYNIIQNIKKYCECTKKYKRLPTREVVIGNVKIGGNNK 136
Query: 104 IRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIP 163
I +QTM + DT++V V ++ + D GAD+VR+TVQG +EA A + IK L+ +N NIP
Sbjct: 137 IAIQTMASCDTRNVEECVYQIRKCKDLGADIVRLTVQGVQEAQASYHIKEKLLSENVNIP 196
Query: 164 LVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEY-TDDEYQKELQHIEEVFSP 222
LVADIHF P +AL A+ F+KIRVNPGN+ D R ++ Y T +E+ + I+E F P
Sbjct: 197 LVADIHFNPKIALMAADVFEKIRVNPGNYVDGRKKWIDKVYKTKEEFDEGKLFIKEKFVP 256
Query: 223 LVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMK 282
L+EKCK+ RA+RIGTNHGSLS R++SYYGD+P GMVESAFEF+ +C + +F+N +FSMK
Sbjct: 257 LIEKCKRLNRAIRIGTNHGSLSSRVLSYYGDTPLGMVESAFEFSDLCIENNFYNLVFSMK 316
Query: 283 ASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTI 342
ASN VM+Q+YRLLV++ Y +P+HLGVTEAG G++GR+KS +GIG+LL DG+GDTI
Sbjct: 317 ASNAYVMIQSYRLLVSKQYERNMMFPIHLGVTEAGFGDNGRIKSYLGIGSLLYDGIGDTI 376
Query: 343 RVSLTEPPEKEIDPCRRLA-NLGMRAAELQQGVAPFEEKH-----RHYFDFQRRSGQLP- 395
R+SLTE P +E+ PC++L NL R + E K+ ++ +F+
Sbjct: 377 RISLTEDPWEELTPCKKLVENLKKRIFYNENFKEDNELKNNEMDTKNLLNFEENYRNFNN 436
Query: 396 IQKEGEEVDYRGVLHRDGSVLMSVSLDQLKAPELLYKSLAAKLVV-GMPFKDLATVDSIL 454
I+K E + VLH + ++ V++ +L+ ++K L ++ G K T D ++
Sbjct: 437 IKKRNVEKN-NNVLHEECTIGNVVTIKELEDSLQIFKDLNLEVDSNGNLKKGAKTTDMVI 495
Query: 455 LRELPSVDDHDARLALKRLVDISMGVI 481
+ + ++ + + + +L+ + + ++
Sbjct: 496 INDFHNITNLGKK-TVDKLMQVGINIV 521
>UNIPROTKB|Q8IJH7 [details] [associations]
symbol:PF10_0221 "GcpE protein" species:36329 "Plasmodium
falciparum 3D7" [GO:0003674 "molecular_function" evidence=ND]
[GO:0020011 "apicoplast" evidence=IDA] HAMAP:MF_00159
InterPro:IPR004588 InterPro:IPR017178 Pfam:PF04551
PIRSF:PIRSF037336 GO:GO:0005506 GO:GO:0016114 EMBL:AE014185
GO:GO:0020011 KO:K03526 OMA:SMRIGTN GO:GO:0046429
TIGRFAMs:TIGR00612 RefSeq:XP_001347505.1 ProteinModelPortal:Q8IJH7
IntAct:Q8IJH7 MINT:MINT-1651685 EnsemblProtists:PF10_0221:mRNA
GeneID:810378 KEGG:pfa:PF10_0221 EuPathDB:PlasmoDB:PF3D7_1022800
HOGENOM:HOG000261018 ProtClustDB:CLSZ2433456 Uniprot:Q8IJH7
Length = 824
Score = 857 (306.7 bits), Expect = 1.1e-85, P = 1.1e-85
Identities = 183/447 (40%), Positives = 280/447 (62%)
Query: 44 FTVIRNSSNSSSDIAELQPASEGSPLLVPRQKYCESIHKTVRRKTRTVMVGNVAIGSEHP 103
++++ NSS + E ++ +KYCE K R TR V++GNV IG +
Sbjct: 77 YSLLNEEGNSSKKEYKNLKDEEKYNIIQNIKKYCECTKKYKRLPTREVVIGNVKIGGNNK 136
Query: 104 IRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIP 163
I +QTM + DT++V V ++ + D GAD+VR+TVQG +EA A + IK L+ +N NIP
Sbjct: 137 IAIQTMASCDTRNVEECVYQIRKCKDLGADIVRLTVQGVQEAQASYHIKEKLLSENVNIP 196
Query: 164 LVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEY-TDDEYQKELQHIEEVFSP 222
LVADIHF P +AL A+ F+KIRVNPGN+ D R ++ Y T +E+ + I+E F P
Sbjct: 197 LVADIHFNPKIALMAADVFEKIRVNPGNYVDGRKKWIDKVYKTKEEFDEGKLFIKEKFVP 256
Query: 223 LVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMK 282
L+EKCK+ RA+RIGTNHGSLS R++SYYGD+P GMVESAFEF+ +C + +F+N +FSMK
Sbjct: 257 LIEKCKRLNRAIRIGTNHGSLSSRVLSYYGDTPLGMVESAFEFSDLCIENNFYNLVFSMK 316
Query: 283 ASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTI 342
ASN VM+Q+YRLLV++ Y +P+HLGVTEAG G++GR+KS +GIG+LL DG+GDTI
Sbjct: 317 ASNAYVMIQSYRLLVSKQYERNMMFPIHLGVTEAGFGDNGRIKSYLGIGSLLYDGIGDTI 376
Query: 343 RVSLTEPPEKEIDPCRRLA-NLGMRAAELQQGVAPFEEKH-----RHYFDFQRRSGQLP- 395
R+SLTE P +E+ PC++L NL R + E K+ ++ +F+
Sbjct: 377 RISLTEDPWEELTPCKKLVENLKKRIFYNENFKEDNELKNNEMDTKNLLNFEENYRNFNN 436
Query: 396 IQKEGEEVDYRGVLHRDGSVLMSVSLDQLKAPELLYKSLAAKLVV-GMPFKDLATVDSIL 454
I+K E + VLH + ++ V++ +L+ ++K L ++ G K T D ++
Sbjct: 437 IKKRNVEKN-NNVLHEECTIGNVVTIKELEDSLQIFKDLNLEVDSNGNLKKGAKTTDMVI 495
Query: 455 LRELPSVDDHDARLALKRLVDISMGVI 481
+ + ++ + + + +L+ + + ++
Sbjct: 496 INDFHNITNLGKK-TVDKLMQVGINIV 521
>UNIPROTKB|P73672 [details] [associations]
symbol:ispG "4-hydroxy-3-methylbut-2-en-1-yl diphosphate
synthase" species:1111708 "Synechocystis sp. PCC 6803 substr.
Kazusa" [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=ISS] HAMAP:MF_00159 InterPro:IPR004588 InterPro:IPR016425
Pfam:PF04551 PIRSF:PIRSF004640 UniPathway:UPA00056 GO:GO:0005506
GO:GO:0051539 GO:GO:0016114 EMBL:BA000022 GenomeReviews:BA000022_GR
GO:GO:0019288 KO:K03526 GO:GO:0046429 TIGRFAMs:TIGR00612
eggNOG:COG0821 HOGENOM:HOG000261019 OMA:PRKLEIV
ProtClustDB:PRK00366 PIR:S77159 RefSeq:NP_441037.1
RefSeq:YP_005651094.1 ProteinModelPortal:P73672 IntAct:P73672
STRING:P73672 GeneID:12255340 GeneID:954350 KEGG:syn:slr2136
KEGG:syy:SYNGTS_1141 PATRIC:23839364 Uniprot:P73672
Length = 403
Score = 696 (250.1 bits), Expect = 1.3e-68, P = 1.3e-68
Identities = 150/312 (48%), Positives = 198/312 (63%)
Query: 69 LLVPRQ-KYCESIHKTVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRI 127
L P Q ++ +IH RRKTR V VG V +G HP+ VQ+M DT DV G+V + R+
Sbjct: 6 LPTPVQPEFDTTIH---RRKTRPVPVGAVTVGGGHPVVVQSMINEDTLDVDGSVAGIRRL 62
Query: 128 ADQGADLVRITVQGKREADACFEIKNSLVQKNYN-IPLVADIHF-APSVALRVAECFDKI 185
+ G ++VR+TV A A +IK L Q Y +PLVAD+H +AL VA+ DK+
Sbjct: 63 HEIGCEIVRVTVPSMAHAKALADIKQKL-QATYQAVPLVADVHHNGMKIALEVAKHVDKV 121
Query: 186 RVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSD 245
R+NPG + + ++ Y+D E+ + + I E PLV + G+++RIG NHGSLS+
Sbjct: 122 RINPGLYVFEKPDAQREGYSDQEFAEIGEKIRETLEPLVISLRDQGKSMRIGVNHGSLSE 181
Query: 246 RIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGW 305
R++ YGD+P GMV+SA EF +IC LDF N + SMKAS VM+ AYRL+V M G
Sbjct: 182 RMLFTYGDTPEGMVQSALEFIKICESLDFRNLVVSMKASRVPVMLAAYRLMVKRMDELGM 241
Query: 306 DYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRLAN-LG 364
DYPLHLGVTEAG+GE GR+KS GI TLL DG+GDTIRVSLTE PEKEI C + LG
Sbjct: 242 DYPLHLGVTEAGDGEYGRIKSTAGIATLLADGIGDTIRVSLTEAPEKEIPVCYSILQALG 301
Query: 365 MRAAELQQGVAP 376
+R ++ P
Sbjct: 302 LRKTMVEYVACP 313
>UNIPROTKB|Q8DK70 [details] [associations]
symbol:ispG "4-hydroxy-3-methylbut-2-en-1-yl diphosphate
synthase" species:197221 "Thermosynechococcus elongatus BP-1"
[GO:0005515 "protein binding" evidence=IPI] [GO:0009055 "electron
carrier activity" evidence=TAS] [GO:0051539 "4 iron, 4 sulfur
cluster binding" evidence=IDA] HAMAP:MF_00159 InterPro:IPR004588
InterPro:IPR016425 Pfam:PF04551 PIRSF:PIRSF004640
UniPathway:UPA00056 GO:GO:0005506 GO:GO:0009055 GO:GO:0051539
GO:GO:0016114 GO:GO:0019288 EMBL:BA000039 GenomeReviews:BA000039_GR
KO:K03526 GO:GO:0046429 TIGRFAMs:TIGR00612 eggNOG:COG0821
HOGENOM:HOG000261019 OMA:PRKLEIV ProtClustDB:PRK00366
RefSeq:NP_681786.1 ProteinModelPortal:Q8DK70 IntAct:Q8DK70
STRING:Q8DK70 GeneID:1011326 KEGG:tel:tlr0996 PATRIC:23927294
Uniprot:Q8DK70
Length = 402
Score = 681 (244.8 bits), Expect = 5.1e-67, P = 5.1e-67
Identities = 140/295 (47%), Positives = 189/295 (64%)
Query: 84 VRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKR 143
VRRKTR V +G+V IG HP+ VQ+M DT D+ G+V + R+ + G ++VR+TV
Sbjct: 18 VRRKTRPVPIGSVVIGGGHPVAVQSMINEDTLDIEGSVAAIRRLHEIGCEIVRVTVPSLA 77
Query: 144 EADACFEIKNSLVQKNYNIPLVADIHF-APSVALRVAECFDKIRVNPGNFADRRAQFEQL 202
A A EI++ L + +PLVAD+H +AL VA+ D +R+NPG + + + +
Sbjct: 78 HAKAMEEIRDRLYKTYKPVPLVADVHHNGMKIALEVAKYVDNVRINPGLYVFEKPKPNRT 137
Query: 203 EYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESA 262
EYT E+ + I E PLV + G+++RIG NHGSL++R++ YGD+P GMVESA
Sbjct: 138 EYTQAEFDEIGAKIRETLEPLVISLRDQGKSMRIGVNHGSLAERMLFTYGDTPEGMVESA 197
Query: 263 FEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDG 322
EF RIC L+F+N S+KAS VM+ A RL+V M G DYPLHLGVTEAG+GE G
Sbjct: 198 LEFIRICESLNFYNLEISLKASRVPVMIAANRLMVKRMDELGMDYPLHLGVTEAGDGEYG 257
Query: 323 RMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRLAN-LGMRAAELQQGVAP 376
R+KS GI TLL +G+GDTIRVSLTE PEKEI C + LG+R ++ P
Sbjct: 258 RIKSTAGIATLLAEGIGDTIRVSLTEAPEKEIPVCYGILQALGLRRTMVEYVACP 312
>UNIPROTKB|Q81LV7 [details] [associations]
symbol:ispG "4-hydroxy-3-methylbut-2-en-1-yl diphosphate
synthase" species:1392 "Bacillus anthracis" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_00159 InterPro:IPR004588 InterPro:IPR011005
InterPro:IPR013785 InterPro:IPR016425 Pfam:PF04551
PIRSF:PIRSF004640 UniPathway:UPA00056 Gene3D:3.20.20.70
GO:GO:0005506 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0051539 GO:GO:0016114
SUPFAM:SSF51717 GO:GO:0019288 KO:K03526 GO:GO:0046429
TIGRFAMs:TIGR00612 RefSeq:NP_846727.1 RefSeq:YP_021146.1
RefSeq:YP_030429.1 ProteinModelPortal:Q81LV7 DNASU:1088122
EnsemblBacteria:EBBACT00000010534 EnsemblBacteria:EBBACT00000014453
EnsemblBacteria:EBBACT00000022514 GeneID:1088122 GeneID:2818786
GeneID:2851988 KEGG:ban:BA_4502 KEGG:bar:GBAA_4502 KEGG:bat:BAS4180
eggNOG:COG0821 HOGENOM:HOG000261019 OMA:PRKLEIV
ProtClustDB:PRK00366 BioCyc:BANT260799:GJAJ-4237-MONOMER
BioCyc:BANT261594:GJ7F-4379-MONOMER Uniprot:Q81LV7
Length = 367
Score = 271 (100.5 bits), Expect = 3.1e-45, Sum P(2) = 3.1e-45
Identities = 59/139 (42%), Positives = 84/139 (60%)
Query: 223 LVEKCKKYGRAVRIGTNHGSLSDRIMSYYG-DSPRGMVESAFEFARICRKLDFHNFLFSM 281
+V K+ G +RIG N GSL I+ YG + GMVESA +I LDFH+ + SM
Sbjct: 116 VVNAAKERGIPIRIGVNAGSLERHILEKYGYPTADGMVESALHHIKILEDLDFHDIIVSM 175
Query: 282 KASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDT 341
KAS+ + ++AY E +DYPLHLG+TE+G G +KSA G+G +L G+G+T
Sbjct: 176 KASDVNLAIEAY-----EKAARAFDYPLHLGITESGTLFAGTVKSAAGLGAILNKGIGNT 230
Query: 342 IRVSLTEPPEKEIDPCRRL 360
+R+SL+ P +E+ R L
Sbjct: 231 LRISLSADPVEEVKVAREL 249
Score = 238 (88.8 bits), Expect = 3.1e-45, Sum P(2) = 3.1e-45
Identities = 55/119 (46%), Positives = 73/119 (61%)
Query: 83 TVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGK 142
T R KTR V VGN+ IG + + +Q+MTT T DV TV E+ R+ + G +VR+ V +
Sbjct: 2 THRTKTRPVKVGNLTIGGNNELIIQSMTTTKTHDVEATVAEIKRLEEAGCQVVRVAVPDE 61
Query: 143 READACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGNFADRRAQFE 200
R A+A +IK K NIPLVADIHF +AL+ E DK+R+NPGN RR + E
Sbjct: 62 RAANAIADIK-----KQINIPLVADIHFDYRLALKAIEGGIDKVRINPGNIG-RRHKVE 114
>TIGR_CMR|BA_4502 [details] [associations]
symbol:BA_4502 "gcpE protein" species:198094 "Bacillus
anthracis str. Ames" [GO:0003674 "molecular_function" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] HAMAP:MF_00159
InterPro:IPR004588 InterPro:IPR011005 InterPro:IPR013785
InterPro:IPR016425 Pfam:PF04551 PIRSF:PIRSF004640
UniPathway:UPA00056 Gene3D:3.20.20.70 GO:GO:0005506 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0051539
GO:GO:0016114 SUPFAM:SSF51717 GO:GO:0019288 KO:K03526 GO:GO:0046429
TIGRFAMs:TIGR00612 RefSeq:NP_846727.1 RefSeq:YP_021146.1
RefSeq:YP_030429.1 ProteinModelPortal:Q81LV7 DNASU:1088122
EnsemblBacteria:EBBACT00000010534 EnsemblBacteria:EBBACT00000014453
EnsemblBacteria:EBBACT00000022514 GeneID:1088122 GeneID:2818786
GeneID:2851988 KEGG:ban:BA_4502 KEGG:bar:GBAA_4502 KEGG:bat:BAS4180
eggNOG:COG0821 HOGENOM:HOG000261019 OMA:PRKLEIV
ProtClustDB:PRK00366 BioCyc:BANT260799:GJAJ-4237-MONOMER
BioCyc:BANT261594:GJ7F-4379-MONOMER Uniprot:Q81LV7
Length = 367
Score = 271 (100.5 bits), Expect = 3.1e-45, Sum P(2) = 3.1e-45
Identities = 59/139 (42%), Positives = 84/139 (60%)
Query: 223 LVEKCKKYGRAVRIGTNHGSLSDRIMSYYG-DSPRGMVESAFEFARICRKLDFHNFLFSM 281
+V K+ G +RIG N GSL I+ YG + GMVESA +I LDFH+ + SM
Sbjct: 116 VVNAAKERGIPIRIGVNAGSLERHILEKYGYPTADGMVESALHHIKILEDLDFHDIIVSM 175
Query: 282 KASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDT 341
KAS+ + ++AY E +DYPLHLG+TE+G G +KSA G+G +L G+G+T
Sbjct: 176 KASDVNLAIEAY-----EKAARAFDYPLHLGITESGTLFAGTVKSAAGLGAILNKGIGNT 230
Query: 342 IRVSLTEPPEKEIDPCRRL 360
+R+SL+ P +E+ R L
Sbjct: 231 LRISLSADPVEEVKVAREL 249
Score = 238 (88.8 bits), Expect = 3.1e-45, Sum P(2) = 3.1e-45
Identities = 55/119 (46%), Positives = 73/119 (61%)
Query: 83 TVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGK 142
T R KTR V VGN+ IG + + +Q+MTT T DV TV E+ R+ + G +VR+ V +
Sbjct: 2 THRTKTRPVKVGNLTIGGNNELIIQSMTTTKTHDVEATVAEIKRLEEAGCQVVRVAVPDE 61
Query: 143 READACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGNFADRRAQFE 200
R A+A +IK K NIPLVADIHF +AL+ E DK+R+NPGN RR + E
Sbjct: 62 RAANAIADIK-----KQINIPLVADIHFDYRLALKAIEGGIDKVRINPGNIG-RRHKVE 114
>UNIPROTKB|O33350 [details] [associations]
symbol:ispG "4-hydroxy-3-methylbut-2-en-1-yl diphosphate
synthase" species:1773 "Mycobacterium tuberculosis" [GO:0005618
"cell wall" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] HAMAP:MF_00159 InterPro:IPR004588 InterPro:IPR011005
InterPro:IPR013785 InterPro:IPR016425 Pfam:PF04551
PIRSF:PIRSF004640 UniPathway:UPA00056 GO:GO:0005886 GO:GO:0005618
Gene3D:3.20.20.70 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0005506 GO:GO:0051539 EMBL:BX842581
GO:GO:0016114 SUPFAM:SSF51717 GO:GO:0019288 KO:K03526 GO:GO:0046429
TIGRFAMs:TIGR00612 eggNOG:COG0821 HOGENOM:HOG000261019 OMA:PRKLEIV
ProtClustDB:PRK00366 PIR:F70886 RefSeq:NP_217384.1
RefSeq:NP_337447.1 RefSeq:YP_006516321.1 ProteinModelPortal:O33350
SMR:O33350 PRIDE:O33350 EnsemblBacteria:EBMYCT00000003421
EnsemblBacteria:EBMYCT00000069095 GeneID:13317660 GeneID:887463
GeneID:925341 KEGG:mtc:MT2936 KEGG:mtu:Rv2868c KEGG:mtv:RVBD_2868c
PATRIC:18128228 TubercuList:Rv2868c Uniprot:O33350
Length = 387
Score = 280 (103.6 bits), Expect = 2.4e-42, Sum P(2) = 2.4e-42
Identities = 71/162 (43%), Positives = 93/162 (57%)
Query: 215 HIEEVFSPLVEKCKKYGRA---VRIGTNHGSLSDRIMSYYGDS-PRGMVESAFEFARICR 270
+I+E + E K G A +RIG N GSL R M YG + P +VESA A +
Sbjct: 120 NIKEFDGRVGEVAKAAGAAGIPIRIGVNAGSLDKRFMEKYGKATPEALVESALWEASLFE 179
Query: 271 KLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGI 330
+ F + S+K ++PVVMV AY LL A DYPLHLGVTEAG G +KSA+
Sbjct: 180 EHGFGDIKISVKHNDPVVMVAAYELLAARC-----DYPLHLGVTEAGPAFQGTIKSAVAF 234
Query: 331 GTLLQDGLGDTIRVSLTEPPEKEIDPCRR-LANLGMRAAELQ 371
G LL G+GDTIRVSL+ PP +E+ + L +L +R L+
Sbjct: 235 GALLSRGIGDTIRVSLSAPPVEEVKVGNQVLESLNLRPRSLE 276
Score = 217 (81.4 bits), Expect = 2.4e-42, Sum P(2) = 2.4e-42
Identities = 47/112 (41%), Positives = 66/112 (58%)
Query: 85 RRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKRE 144
RR TR +MVGNV +GS+HP+ VQ+M T T DV T++++ + G D+VR+ + +
Sbjct: 18 RRATRQLMVGNVGVGSDHPVSVQSMCTTKTHDVNSTLQQIAELTAAGCDIVRVACPRQED 77
Query: 145 ADACFEIKNSLVQKNYNIPLVADIHFAPSVALRV--AECFDKIRVNPGNFAD 194
ADA EI ++ IP+VADIHF P A C +RVNPGN +
Sbjct: 78 ADALAEIA-----RHSQIPVVADIHFQPRYIFAAIDAGCA-AVRVNPGNIKE 123
>TIGR_CMR|CHY_1776 [details] [associations]
symbol:CHY_1776 "1-hydroxy-2-methyl-2-(E)-butenyl
4-diphosphate synthase" species:246194 "Carboxydothermus
hydrogenoformans Z-2901" [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=ISS] [GO:0046429
"4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity"
evidence=ISS] HAMAP:MF_00159 InterPro:IPR004588 InterPro:IPR011005
InterPro:IPR016425 Pfam:PF04551 PIRSF:PIRSF004640
UniPathway:UPA00056 GO:GO:0005506 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0051539 GO:GO:0016114
SUPFAM:SSF51717 GO:GO:0019288 KO:K03526 GO:GO:0046429
TIGRFAMs:TIGR00612 eggNOG:COG0821 OMA:PRKLEIV HOGENOM:HOG000261017
RefSeq:YP_360596.1 ProteinModelPortal:Q3AB88 STRING:Q3AB88
GeneID:3728187 KEGG:chy:CHY_1776 PATRIC:21276663
ProtClustDB:CLSK2772364 BioCyc:CHYD246194:GJCN-1775-MONOMER
Uniprot:Q3AB88
Length = 355
Score = 268 (99.4 bits), Expect = 2.7e-40, Sum P(2) = 2.7e-40
Identities = 63/146 (43%), Positives = 87/146 (59%)
Query: 223 LVEKCKKYGRAVRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFARICRKLDFHNFLFSM 281
+V + K +RIG N GSL +++ YG +P MVESA I + F S+
Sbjct: 117 IVREAKNRRVPIRIGVNAGSLEKKLVEKYGGITPEAMVESALHHVGILEDMGFDLIKISL 176
Query: 282 KASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDT 341
KAS+ +M+ AYRLL ++ DYP H+GVTEAG G +KSA+GIG LL +G+GDT
Sbjct: 177 KASDIPLMLAAYRLLAKKV-----DYPFHIGVTEAGPRSTGIIKSAVGIGALLAEGIGDT 231
Query: 342 IRVSLTEPPEKEID-PCRRLANLGMR 366
+RVSLT P +E+ + L LG+R
Sbjct: 232 LRVSLTADPVEEVKIGFQILKALGLR 257
Score = 194 (73.4 bits), Expect = 2.7e-40, Sum P(2) = 2.7e-40
Identities = 43/108 (39%), Positives = 67/108 (62%)
Query: 85 RRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKRE 144
RRKT+T+ +G V +G + PI VQ+MT DT+D T+ ++ R+ G +LVR+ V +
Sbjct: 5 RRKTKTIFIGTVPVGGDAPITVQSMTNTDTRDWQKTLRQIKRLKKAGCELVRVAVPDQEA 64
Query: 145 ADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGN 191
A A +K +V+K+ +P++ADIHF +AL E +R+NPGN
Sbjct: 65 ARA---LK-LIVEKS-PLPVIADIHFDYKLALMALEAGVHGLRLNPGN 107
>TIGR_CMR|SPO_2594 [details] [associations]
symbol:SPO_2594 "1-hydroxy-2-methyl-2-(E)-butenyl
4-diphosphate synthase" species:246200 "Ruegeria pomeroyi DSS-3"
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=ISS] [GO:0046429 "4-hydroxy-3-methylbut-2-en-1-yl
diphosphate synthase activity" evidence=ISS] HAMAP:MF_00159
InterPro:IPR004588 InterPro:IPR011005 InterPro:IPR013785
InterPro:IPR016425 Pfam:PF04551 PIRSF:PIRSF004640
UniPathway:UPA00056 Gene3D:3.20.20.70 GO:GO:0005506 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0051539 GO:GO:0016114
SUPFAM:SSF51717 GO:GO:0019288 KO:K03526 GO:GO:0046429
TIGRFAMs:TIGR00612 eggNOG:COG0821 HOGENOM:HOG000261019 OMA:PRKLEIV
ProtClustDB:PRK00366 RefSeq:YP_167807.1 ProteinModelPortal:Q5LQ99
GeneID:3194269 KEGG:sil:SPO2594 PATRIC:23378591 Uniprot:Q5LQ99
Length = 375
Score = 264 (98.0 bits), Expect = 2.7e-39, Sum P(2) = 2.7e-39
Identities = 62/146 (42%), Positives = 88/146 (60%)
Query: 223 LVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDS-PRGMVESAFEFARICRKLDFHNFLFSM 281
++ + +G ++RIG N GSL ++ YG+ P MVES E RI + DFH + S+
Sbjct: 126 VIRAARDHGCSIRIGVNAGSLEKHLLEKYGEPCPEAMVESGLEHIRILQDNDFHEYKISV 185
Query: 282 KASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDT 341
KAS+ + AY+ +AE D P+HLG+TEAG G +KSAIG+G LL G+GDT
Sbjct: 186 KASDVFLSAAAYQG-IAE----ATDAPIHLGITEAGGLVSGTIKSAIGLGNLLWMGIGDT 240
Query: 342 IRVSLTEPPEKEIDPCRR-LANLGMR 366
IRVSL+ P +E+ L +LG+R
Sbjct: 241 IRVSLSADPVEEVKVGYEILKSLGLR 266
Score = 212 (79.7 bits), Expect = 2.7e-39, Sum P(2) = 2.7e-39
Identities = 50/108 (46%), Positives = 68/108 (62%)
Query: 85 RRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKRE 144
RRK+R +MVGNV +G + PI VQTMT T DVA TV +V A+ GAD+VR++V +
Sbjct: 14 RRKSRQIMVGNVPVGGDAPISVQTMTNTLTTDVAATVAQVQAAAEAGADIVRVSVPDEAS 73
Query: 145 ADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDK-IRVNPGN 191
A A EI V+++ +P+VADIHF + AE +R+NPGN
Sbjct: 74 ARALREI----VRES-PVPIVADIHFHYRRGIEAAEAGAACLRINPGN 116
>UNIPROTKB|Q9KTX1 [details] [associations]
symbol:ispG "4-hydroxy-3-methylbut-2-en-1-yl diphosphate
synthase" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0008150 "biological_process" evidence=ND]
HAMAP:MF_00159 InterPro:IPR004588 InterPro:IPR011005
InterPro:IPR013785 InterPro:IPR016425 Pfam:PF04551
PIRSF:PIRSF004640 UniPathway:UPA00056 Gene3D:3.20.20.70
GO:GO:0005506 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0051539
GO:GO:0016114 SUPFAM:SSF51717 GO:GO:0019288 KO:K03526 GO:GO:0046429
TIGRFAMs:TIGR00612 eggNOG:COG0821 OMA:PRKLEIV ProtClustDB:PRK00366
PIR:F82283 RefSeq:NP_230408.1 ProteinModelPortal:Q9KTX1
DNASU:2615302 GeneID:2615302 KEGG:vch:VC0759 PATRIC:20080629
Uniprot:Q9KTX1
Length = 374
Score = 260 (96.6 bits), Expect = 1.8e-38, Sum P(2) = 1.8e-38
Identities = 57/133 (42%), Positives = 82/133 (61%)
Query: 223 LVEKCKKYGRAVRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFARICRKLDFHNFLFSM 281
+V+ + G +RIG N GSL + YG+ +P +VESA I +L+F F S+
Sbjct: 121 VVDCARDKGIPIRIGVNGGSLEKDLQLKYGEPTPEALVESAMRHVDILDRLNFDQFKVSV 180
Query: 282 KASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDT 341
KAS+ + V +YRLL ++ D PLHLG+TEAG G +KSA+G+G LL +G+GDT
Sbjct: 181 KASDVFLAVDSYRLLAKKI-----DQPLHLGITEAGGARAGSVKSAVGLGMLLAEGIGDT 235
Query: 342 IRVSLTEPPEKEI 354
+R+SL P +EI
Sbjct: 236 LRISLAADPVEEI 248
Score = 210 (79.0 bits), Expect = 1.8e-38, Sum P(2) = 1.8e-38
Identities = 48/111 (43%), Positives = 70/111 (63%)
Query: 85 RRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKRE 144
RR + + VG+V IG PI VQ+MT T DVA TV ++ + GAD+VR++V
Sbjct: 9 RRPSTRIYVGDVPIGDGAPIAVQSMTNTRTTDVAATVAQIKSLEKVGADIVRVSVPTMEA 68
Query: 145 ADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGNFAD 194
A+A F+ L+++ ++PLVADIHF +AL+VAE D +R+NPGN +
Sbjct: 69 AEA-FK----LIKQQVSVPLVADIHFDYRIALKVAEYGVDCLRINPGNIGN 114
>TIGR_CMR|VC_0759 [details] [associations]
symbol:VC_0759 "gcpE protein" species:686 "Vibrio cholerae
O1 biovar El Tor" [GO:0008150 "biological_process" evidence=ND]
HAMAP:MF_00159 InterPro:IPR004588 InterPro:IPR011005
InterPro:IPR013785 InterPro:IPR016425 Pfam:PF04551
PIRSF:PIRSF004640 UniPathway:UPA00056 Gene3D:3.20.20.70
GO:GO:0005506 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0051539
GO:GO:0016114 SUPFAM:SSF51717 GO:GO:0019288 KO:K03526 GO:GO:0046429
TIGRFAMs:TIGR00612 eggNOG:COG0821 OMA:PRKLEIV ProtClustDB:PRK00366
PIR:F82283 RefSeq:NP_230408.1 ProteinModelPortal:Q9KTX1
DNASU:2615302 GeneID:2615302 KEGG:vch:VC0759 PATRIC:20080629
Uniprot:Q9KTX1
Length = 374
Score = 260 (96.6 bits), Expect = 1.8e-38, Sum P(2) = 1.8e-38
Identities = 57/133 (42%), Positives = 82/133 (61%)
Query: 223 LVEKCKKYGRAVRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFARICRKLDFHNFLFSM 281
+V+ + G +RIG N GSL + YG+ +P +VESA I +L+F F S+
Sbjct: 121 VVDCARDKGIPIRIGVNGGSLEKDLQLKYGEPTPEALVESAMRHVDILDRLNFDQFKVSV 180
Query: 282 KASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDT 341
KAS+ + V +YRLL ++ D PLHLG+TEAG G +KSA+G+G LL +G+GDT
Sbjct: 181 KASDVFLAVDSYRLLAKKI-----DQPLHLGITEAGGARAGSVKSAVGLGMLLAEGIGDT 235
Query: 342 IRVSLTEPPEKEI 354
+R+SL P +EI
Sbjct: 236 LRISLAADPVEEI 248
Score = 210 (79.0 bits), Expect = 1.8e-38, Sum P(2) = 1.8e-38
Identities = 48/111 (43%), Positives = 70/111 (63%)
Query: 85 RRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKRE 144
RR + + VG+V IG PI VQ+MT T DVA TV ++ + GAD+VR++V
Sbjct: 9 RRPSTRIYVGDVPIGDGAPIAVQSMTNTRTTDVAATVAQIKSLEKVGADIVRVSVPTMEA 68
Query: 145 ADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGNFAD 194
A+A F+ L+++ ++PLVADIHF +AL+VAE D +R+NPGN +
Sbjct: 69 AEA-FK----LIKQQVSVPLVADIHFDYRIALKVAEYGVDCLRINPGNIGN 114
>TIGR_CMR|GSU_1459 [details] [associations]
symbol:GSU_1459 "1-hydroxy-2-methyl-2-(E)-butenyl
4-diphosphate" species:243231 "Geobacter sulfurreducens PCA"
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=ISS] [GO:0046429
"4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity"
evidence=ISS] HAMAP:MF_00159 InterPro:IPR004588 InterPro:IPR011005
InterPro:IPR016425 Pfam:PF04551 PIRSF:PIRSF004640
UniPathway:UPA00056 GO:GO:0005506 GO:GO:0051539 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0016114 SUPFAM:SSF51717
GO:GO:0019288 KO:K03526 GO:GO:0046429 TIGRFAMs:TIGR00612
eggNOG:COG0821 OMA:PRKLEIV ProtClustDB:PRK00366 RefSeq:NP_952510.1
ProteinModelPortal:Q74D60 GeneID:2686219 KEGG:gsu:GSU1459
PATRIC:22025761 HOGENOM:HOG000261017
BioCyc:GSUL243231:GH27-1438-MONOMER Uniprot:Q74D60
Length = 353
Score = 256 (95.2 bits), Expect = 5.1e-38, Sum P(2) = 5.1e-38
Identities = 57/122 (46%), Positives = 74/122 (60%)
Query: 234 VRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQA 292
+RIG N GSL ++ YG + MVESA RI +L + S+KAS+ V A
Sbjct: 125 IRIGVNAGSLEKELLQKYGHPTAEAMVESALGHVRILEELGYDQIKISLKASDVPKTVAA 184
Query: 293 YRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEK 352
YRLL + DYPLH+G+TEAG G +KSA+G+G LL DG+GDT+RVSLT P
Sbjct: 185 YRLLAQRI-----DYPLHIGITEAGTMFSGTIKSAVGLGILLADGIGDTLRVSLTGDPVD 239
Query: 353 EI 354
E+
Sbjct: 240 EV 241
Score = 198 (74.8 bits), Expect = 5.1e-38, Sum P(2) = 5.1e-38
Identities = 43/113 (38%), Positives = 66/113 (58%)
Query: 84 VRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKR 143
++ KTR + VGNV +G + P VQ+M DT+D T++++ +A G ++VR V
Sbjct: 1 MKAKTRQIRVGNVPVGGDAPCSVQSMCNTDTRDAGATLDQINALAAAGCEIVRCAVPDMA 60
Query: 144 EADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGNFADR 195
A+A IK + IP++ADIHF +AL+V E D +R+NPGN +R
Sbjct: 61 AAEALGAIK-----RQSPIPVIADIHFDYKLALKVLEGGIDGLRLNPGNIGER 108
>TIGR_CMR|SO_3312 [details] [associations]
symbol:SO_3312 "1-hydroxy-2-methyl-2-(E)-butenyl
4-diphosphate synthase" species:211586 "Shewanella oneidensis MR-1"
[GO:0003824 "catalytic activity" evidence=ISS] [GO:0008299
"isoprenoid biosynthetic process" evidence=ISS] HAMAP:MF_00159
InterPro:IPR004588 InterPro:IPR011005 InterPro:IPR013785
InterPro:IPR016425 Pfam:PF04551 PIRSF:PIRSF004640
UniPathway:UPA00056 Gene3D:3.20.20.70 GO:GO:0005506 GO:GO:0051539
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0016114
SUPFAM:SSF51717 GO:GO:0019288 KO:K03526 GO:GO:0046429
TIGRFAMs:TIGR00612 eggNOG:COG0821 HOGENOM:HOG000261019 OMA:PRKLEIV
ProtClustDB:PRK00366 RefSeq:NP_718866.1 ProteinModelPortal:Q8EC32
GeneID:1170997 KEGG:son:SO_3312 PATRIC:23526300 Uniprot:Q8EC32
Length = 371
Score = 253 (94.1 bits), Expect = 1.8e-37, Sum P(2) = 1.8e-37
Identities = 57/139 (41%), Positives = 83/139 (59%)
Query: 217 EEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFARICRKLDFH 275
EE +VE + +RIG N GSL +M Y + +P ++ESA I +L+F
Sbjct: 115 EERIRSVVECARDKNIPIRIGVNGGSLEKDLMDKYKEPTPEALLESAMRHVDILDRLNFD 174
Query: 276 NFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQ 335
F S+KAS+ + V++YRLL ++ PLHLG+TEAG G +KSA+G+G LL
Sbjct: 175 QFKVSVKASDVFLAVESYRLLAKQIR-----QPLHLGITEAGGARAGAVKSAVGLGMLLA 229
Query: 336 DGLGDTIRVSLTEPPEKEI 354
+G+GDT+R+SL P +EI
Sbjct: 230 EGIGDTLRISLAADPVEEI 248
Score = 210 (79.0 bits), Expect = 1.8e-37, Sum P(2) = 1.8e-37
Identities = 48/111 (43%), Positives = 70/111 (63%)
Query: 85 RRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKRE 144
RR + + VGNV IG PI VQ+MT T DV TV ++ + GAD+VR++V
Sbjct: 9 RRPSTRIYVGNVPIGDGAPIAVQSMTNTKTTDVEATVAQIRALEKVGADIVRVSVPTMDA 68
Query: 145 ADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGNFAD 194
A+A F+ L++++ ++PLVADIHF +AL+VAE D +R+NPGN +
Sbjct: 69 AEA-FK----LIKQSVSVPLVADIHFDYRIALKVAEYGVDCLRINPGNIGN 114
>TIGR_CMR|CJE_0785 [details] [associations]
symbol:CJE_0785 "1-hydroxy-2-methyl-2-(E)-butenyl
4-diphosphate synthase" species:195099 "Campylobacter jejuni
RM1221" [GO:0005737 "cytoplasm" evidence=ISS] [GO:0019288
"isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=ISS] [GO:0046429
"4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity"
evidence=ISS] HAMAP:MF_00159 InterPro:IPR004588 InterPro:IPR011005
InterPro:IPR016425 Pfam:PF04551 PIRSF:PIRSF004640
UniPathway:UPA00056 GO:GO:0005506 GO:GO:0051539 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0016114 SUPFAM:SSF51717
GO:GO:0019288 KO:K03526 GO:GO:0046429 TIGRFAMs:TIGR00612
eggNOG:COG0821 HOGENOM:HOG000261019 ProtClustDB:PRK00366
RefSeq:YP_178790.1 ProteinModelPortal:Q5HV95 STRING:Q5HV95
GeneID:3230736 KEGG:cjr:CJE0785 PATRIC:20043317 OMA:MTESAME
BioCyc:CJEJ195099:GJC0-800-MONOMER Uniprot:Q5HV95
Length = 357
Score = 238 (88.8 bits), Expect = 4.9e-35, Sum P(2) = 4.9e-35
Identities = 56/144 (38%), Positives = 79/144 (54%)
Query: 217 EEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHN 276
+E +V+ CK+ G +RIG NHGS+ + +G M+ESA ++ LDF +
Sbjct: 110 KENIKEVVKACKERGIPIRIGINHGSIEKQFSDKFGYGVDAMLESAMYNIKLLEDLDFFD 169
Query: 277 FLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQD 336
SMK S+ ++AY L DYP HLGVTEAG +KS+I +G LL
Sbjct: 170 IKISMKTSDAQKTIEAYERLRPLC-----DYPFHLGVTEAGTKFHSTVKSSIALGNLLLK 224
Query: 337 GLGDTIRVSLTEPPEKEIDPCRRL 360
G+GDT+RVS+T E+EI R +
Sbjct: 225 GIGDTMRVSMTGELEEEIRVARAI 248
Score = 204 (76.9 bits), Expect = 4.9e-35, Sum P(2) = 4.9e-35
Identities = 45/111 (40%), Positives = 68/111 (61%)
Query: 85 RRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKRE 144
R KTR + VGNV IG + PI VQ+M T+D+ G++E++ R+ GA++VR+ +
Sbjct: 5 RFKTRQIKVGNVLIGGDAPISVQSMLFTKTRDIEGSLEQINRLYFAGANIVRLACLDMAD 64
Query: 145 ADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADR 195
A A EIK K+ +PL+ DIHF ++A+ AE D +R+NPGN +
Sbjct: 65 ARALKEIK----AKS-PLPLIVDIHFNHNLAVYCAEFIDGVRINPGNIGSK 110
>TIGR_CMR|DET_0369 [details] [associations]
symbol:DET_0369 "1-hydroxy-2-methyl-2-(E)-butenyl
4-diphosphate synthase" species:243164 "Dehalococcoides ethenogenes
195" [GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=ISS] [GO:0046429
"4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity"
evidence=ISS] HAMAP:MF_00159 InterPro:IPR004588 InterPro:IPR011060
InterPro:IPR013785 InterPro:IPR016425 Pfam:PF04551
PIRSF:PIRSF004640 UniPathway:UPA00056 Gene3D:3.20.20.70
GO:GO:0005506 GO:GO:0051539 EMBL:CP000027 GenomeReviews:CP000027_GR
GO:GO:0016114 SUPFAM:SSF51366 GO:GO:0019288 KO:K03526 GO:GO:0046429
TIGRFAMs:TIGR00612 eggNOG:COG0821 HOGENOM:HOG000261019 OMA:PRKLEIV
ProtClustDB:PRK00366 RefSeq:YP_181115.1 ProteinModelPortal:Q3Z9I4
STRING:Q3Z9I4 GeneID:3230317 KEGG:det:DET0369 PATRIC:21607807
BioCyc:DETH243164:GJNF-369-MONOMER Uniprot:Q3Z9I4
Length = 321
Score = 219 (82.2 bits), Expect = 1.6e-25, Sum P(2) = 1.6e-25
Identities = 52/132 (39%), Positives = 77/132 (58%)
Query: 223 LVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMK 282
+V K+ +RIG N GSL + + + MV++A +I LDF S+K
Sbjct: 89 VVRAAKEREIPIRIGVNAGSLPKDLPPELTTAQK-MVKAAMGHIKILEALDFSLIKVSLK 147
Query: 283 ASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTI 342
A + V+AYR + + + YPLH+G+TE G + G ++SA+GIG LL G+GDTI
Sbjct: 148 AFDVPTTVEAYRQIASLI-----PYPLHVGITETGTPKTGLVRSAVGIGNLLYMGIGDTI 202
Query: 343 RVSLTEPPEKEI 354
RVSLT PP++E+
Sbjct: 203 RVSLTSPPQEEV 214
Score = 130 (50.8 bits), Expect = 1.6e-25, Sum P(2) = 1.6e-25
Identities = 28/87 (32%), Positives = 49/87 (56%)
Query: 109 MTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADI 168
MT DT+++ T+ ++ + + G +++R+ + A A +K+ ++K IP+VADI
Sbjct: 1 MTKTDTRNIPATISQIKELEECGCEIIRLAIPDMEAATA---LKS--IRKEVRIPIVADI 55
Query: 169 HFAPSVALRVAEC-FDKIRVNPGNFAD 194
HF +AL D +R+NPGN D
Sbjct: 56 HFDYRLALAALLAGADGLRLNPGNIGD 82
>UNIPROTKB|P62620 [details] [associations]
symbol:ispG "1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
synthase" species:83333 "Escherichia coli K-12" [GO:0016114
"terpenoid biosynthetic process" evidence=IEA] [GO:0005506 "iron
ion binding" evidence=IEA] [GO:0019288 "isopentenyl diphosphate
biosynthetic process, mevalonate-independent pathway" evidence=IEA]
[GO:0055114 "oxidation-reduction process" evidence=IEA] [GO:0051539
"4 iron, 4 sulfur cluster binding" evidence=IEA] [GO:0051536
"iron-sulfur cluster binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0008299 "isoprenoid biosynthetic
process" evidence=IEA] [GO:0046429 "4-hydroxy-3-methylbut-2-en-1-yl
diphosphate synthase activity" evidence=IEA;IDA] [GO:0006744
"ubiquinone biosynthetic process" evidence=IDA] HAMAP:MF_00159
InterPro:IPR004588 InterPro:IPR011005 InterPro:IPR013785
InterPro:IPR016425 Pfam:PF04551 PIRSF:PIRSF004640
UniPathway:UPA00056 Gene3D:3.20.20.70 GO:GO:0005506 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0051539 GO:GO:0006744 GO:GO:0016114 SUPFAM:SSF51717
GO:GO:0019288 KO:K03526 GO:GO:0046429 TIGRFAMs:TIGR00612
eggNOG:COG0821 HOGENOM:HOG000261019 OMA:PRKLEIV
ProtClustDB:PRK00366 EMBL:X64451 EMBL:AY033515 EMBL:M11843
PIR:S23058 RefSeq:NP_417010.1 RefSeq:YP_490743.1
ProteinModelPortal:P62620 SMR:P62620 DIP:DIP-35832N IntAct:P62620
PaxDb:P62620 PRIDE:P62620 EnsemblBacteria:EBESCT00000000373
EnsemblBacteria:EBESCT00000018344 GeneID:12931596 GeneID:946991
KEGG:ecj:Y75_p2468 KEGG:eco:b2515 PATRIC:32120423 EchoBASE:EB0365
EcoGene:EG10370 BioCyc:EcoCyc:EG10370-MONOMER
BioCyc:ECOL316407:JW2499-MONOMER BioCyc:MetaCyc:EG10370-MONOMER
Genevestigator:P62620 Uniprot:P62620
Length = 372
Score = 260 (96.6 bits), Expect = 3.2e-20, P = 3.2e-20
Identities = 74/198 (37%), Positives = 105/198 (53%)
Query: 166 ADIHFAPSVALRVAECFDKIR--VNPGNFAD----RRAQFEQLEYTDDEYQKELQHI--E 217
ADI + AE F I+ VN AD R + EY D + +I E
Sbjct: 56 ADIVRVSVPTMDAAEAFKLIKQQVNVPLVADIHFDYRIALKVAEYGVDCLRINPGNIGNE 115
Query: 218 EVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFARICRKLDFHN 276
E +V+ + +RIG N GSL + YG+ +P+ ++ESA +L+F
Sbjct: 116 ERIRMVVDCARDKNIPIRIGVNAGSLEKDLQEKYGEPTPQALLESAMRHVDHLDRLNFDQ 175
Query: 277 FLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQD 336
F S+KAS+ + V++YRLL ++ D PLHLG+TEAG G +KSAIG+G LL +
Sbjct: 176 FKVSVKASDVFLAVESYRLLAKQI-----DQPLHLGITEAGGARSGAVKSAIGLGLLLSE 230
Query: 337 GLGDTIRVSLTEPPEKEI 354
G+GDT+RVSL P +EI
Sbjct: 231 GIGDTLRVSLAADPVEEI 248
Score = 219 (82.2 bits), Expect = 3.4e-15, P = 3.4e-15
Identities = 50/111 (45%), Positives = 70/111 (63%)
Query: 85 RRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKRE 144
RRK+ + VGNV IG PI VQ+MT T DV TV ++ + GAD+VR++V
Sbjct: 9 RRKSTRIYVGNVPIGDGAPIAVQSMTNTRTTDVEATVNQIKALERVGADIVRVSVPTMDA 68
Query: 145 ADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGNFAD 194
A+A F+ L+++ N+PLVADIHF +AL+VAE D +R+NPGN +
Sbjct: 69 AEA-FK----LIKQQVNVPLVADIHFDYRIALKVAEYGVDCLRINPGNIGN 114
>TIGR_CMR|ECH_0559 [details] [associations]
symbol:ECH_0559 "4-hydroxy-3-methylbut-2-en-1-yl
diphosphate synthase" species:205920 "Ehrlichia chaffeensis str.
Arkansas" [GO:0005737 "cytoplasm" evidence=ISS] [GO:0019288
"isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=ISS] [GO:0046429
"4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity"
evidence=ISS] HAMAP:MF_00159 InterPro:IPR004588 InterPro:IPR016425
Pfam:PF04551 PIRSF:PIRSF004640 UniPathway:UPA00056 GO:GO:0005506
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0051539 GO:GO:0016114
GO:GO:0019288 KO:K03526 GO:GO:0046429 TIGRFAMs:TIGR00612
eggNOG:COG0821 ProtClustDB:PRK00366 HOGENOM:HOG000261017
RefSeq:YP_507371.1 STRING:Q2GGR2 GeneID:3927424 KEGG:ech:ECH_0559
PATRIC:20576584 OMA:SETECTD BioCyc:ECHA205920:GJNR-561-MONOMER
Uniprot:Q2GGR2
Length = 409
Score = 256 (95.2 bits), Expect = 2.8e-19, P = 2.8e-19
Identities = 92/317 (29%), Positives = 148/317 (46%)
Query: 88 TRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADA 147
T V VG+V IG +P+ VQ+M + DV EV+ +A G++LVR+ V ++
Sbjct: 12 TYEVKVGDVVIGGNNPVVVQSMALGGSGDVYKDAHEVLELAQAGSELVRVAVNSEQAMKN 71
Query: 148 CFEIKNSLVQKNYNIPLVADI--HFAPSVALRVAEC---FDKIRVNPGN--FADRRAQFE 200
I++ LV ++ ++ + + +C KIR+NPGN F ++R
Sbjct: 72 VPYIRDVLVDHGFSAKMIIGCGQYEIARLVNEYPDCAAALGKIRINPGNVGFGNKR---- 127
Query: 201 QLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSL----SDRIMS----YYG 252
++ F +VE K+ +RIG N GSL + ++M+
Sbjct: 128 ----------------DKNFEDIVEFAIKHDIPIRIGVNWGSLDKYLASKLMNDNALLIN 171
Query: 253 DSP------RGMVESAFEFARICRKLDF--HNFLFSMKASNPVVMVQAYRLLVAEMYVHG 304
P + +V SA A+ ++ + + S K S ++ Y +L +
Sbjct: 172 PKPDYIVLQKALVISAITSAKRAEEIGLSKNKIVISCKTSKIQDLIPVYTVLS-----NV 226
Query: 305 WDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEK----EIDPCRR- 359
+YPLHLG+TEAG G G + SA GI LL +G+GDTIRVSLT+ P + E+ C+
Sbjct: 227 CNYPLHLGLTEAGSGTKGMVSSAAGISYLLLNGIGDTIRVSLTQQPGEARSIEVKLCQEI 286
Query: 360 LANLGMRAAELQQGVAP 376
L ++G+R Q P
Sbjct: 287 LQSIGLRNFSAQVTSCP 303
>TIGR_CMR|CPS_4252 [details] [associations]
symbol:CPS_4252 "1-hydroxy-2-methyl-2-(E)-butenyl
4-diphosphate synthase" species:167879 "Colwellia psychrerythraea
34H" [GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=ISS] [GO:0046429
"4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity"
evidence=ISS] HAMAP:MF_00159 InterPro:IPR004588 InterPro:IPR011005
InterPro:IPR013785 InterPro:IPR016425 Pfam:PF04551
PIRSF:PIRSF004640 UniPathway:UPA00056 Gene3D:3.20.20.70
GO:GO:0005506 GO:GO:0051539 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0016114 SUPFAM:SSF51717 GO:GO:0019288 KO:K03526 GO:GO:0046429
TIGRFAMs:TIGR00612 eggNOG:COG0821 HOGENOM:HOG000261019 OMA:PRKLEIV
ProtClustDB:PRK00366 RefSeq:YP_270902.1 ProteinModelPortal:Q47WC0
STRING:Q47WC0 DNASU:3518903 GeneID:3518903 KEGG:cps:CPS_4252
PATRIC:21471369 BioCyc:CPSY167879:GI48-4262-MONOMER Uniprot:Q47WC0
Length = 376
Score = 248 (92.4 bits), Expect = 1.3e-18, P = 1.3e-18
Identities = 72/198 (36%), Positives = 104/198 (52%)
Query: 166 ADIHFAPSVALRVAECFDKIR--VNPGNFAD----RRAQFEQLEYTDDEYQKELQHI--E 217
ADI + AE F +I+ VN AD R + EY D + +I E
Sbjct: 56 ADIVRVSVPTMDAAEAFREIKKQVNVPLVADIHFDYRIALKVAEYGVDCLRINPGNIGNE 115
Query: 218 EVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFARICRKLDFHN 276
+VE + +RIG N GSL I Y + +P ++ESA I +L+F+
Sbjct: 116 NRIRSVVECARDNNIPIRIGVNGGSLEKDIQEKYTEPTPEALLESAMRHVDILDRLNFNE 175
Query: 277 FLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQD 336
F S+KAS+ + V++Y+LL ++ D PLHLG+TEAG G +KS++G+G LL
Sbjct: 176 FKVSVKASDVFLAVESYKLLAKQI-----DNPLHLGITEAGGLRSGSVKSSVGLGLLLAQ 230
Query: 337 GLGDTIRVSLTEPPEKEI 354
G+GDTIR+SL P +EI
Sbjct: 231 GIGDTIRISLAADPIEEI 248
Score = 237 (88.5 bits), Expect = 2.8e-17, P = 2.8e-17
Identities = 53/112 (47%), Positives = 72/112 (64%)
Query: 84 VRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKR 143
+RR +R +MVGNV +G + PI VQ+MT T DVA TV ++ + GAD+VR++V
Sbjct: 8 IRRVSRQIMVGNVPVGGDAPITVQSMTNTLTTDVAATVAQIKALEAVGADIVRVSVPTMD 67
Query: 144 EADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGNFAD 194
A+A EIK K N+PLVADIHF +AL+VAE D +R+NPGN +
Sbjct: 68 AAEAFREIK-----KQVNVPLVADIHFDYRIALKVAEYGVDCLRINPGNIGN 114
>TIGR_CMR|NSE_0799 [details] [associations]
symbol:NSE_0799 "1-hydroxy-2-methyl-2-(E)-butenyl
4-diphosphate synthase" species:222891 "Neorickettsia sennetsu str.
Miyayama" [GO:0005737 "cytoplasm" evidence=ISS] [GO:0019288
"isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=ISS] [GO:0046429
"4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity"
evidence=ISS] HAMAP:MF_00159 InterPro:IPR004588 InterPro:IPR016425
Pfam:PF04551 PIRSF:PIRSF004640 UniPathway:UPA00056 GO:GO:0005506
GO:GO:0051539 GO:GO:0016114 EMBL:CP000237 GenomeReviews:CP000237_GR
GO:GO:0019288 KO:K03526 GO:GO:0046429 TIGRFAMs:TIGR00612
eggNOG:COG0821 ProtClustDB:PRK00366 HOGENOM:HOG000261017
RefSeq:YP_506674.1 STRING:Q2GCX2 GeneID:3931584 KEGG:nse:NSE_0799
PATRIC:22681595 OMA:RNFTPMV BioCyc:NSEN222891:GHFU-810-MONOMER
Uniprot:Q2GCX2
Length = 414
Score = 246 (91.7 bits), Expect = 4.4e-18, P = 4.4e-18
Identities = 93/316 (29%), Positives = 144/316 (45%)
Query: 86 RKTRTVMVGNVAIGSEHPIRVQTMTT------NDTKDVA-GTVEEVMRIADQGADLVRIT 138
RK+ V V V IG +PI VQ+MT+ ND +A E + +A G++L+RI
Sbjct: 6 RKSLVVDVAGVRIGGGNPIVVQSMTSGSRTNPNDVSAIAVDESREAIALAKAGSELIRIA 65
Query: 139 VQGKREADACFEIKNSLVQKNYN-IPLVA----DIHFAPSVALRVAECFDKIRVNPGN-- 191
+ ++ A A I+ +L + + +PLV +I KIR+NPGN
Sbjct: 66 INSEKAAAAIPYIRENLDKSGFEKVPLVGCGQYEIKRVLETQTEAIRSLGKIRINPGNIG 125
Query: 192 FADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIM--- 248
F +R D + K ++ I CK + +RIG N GSL ++
Sbjct: 126 FGSKR---------DTNFDKVIELI----------CK-HDLPIRIGVNWGSLDQSVLRQI 165
Query: 249 -----------SYYGDSPRGMVESAFEFARICRKLDFH--NFLFSMKASNPVVMVQAYRL 295
SY G +++SA A+ ++ + S K S+ +V Y
Sbjct: 166 MDDNAKNEKPSSYNGVLRCALIQSALASAKRAEEVGLSPDKIILSCKVSSFQDLVAVYSS 225
Query: 296 LVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEK--- 352
L + YPLHLG+TEAG G G +K+ + LL G+GDTIR SLT+ P +
Sbjct: 226 LAEQCR-----YPLHLGLTEAGMGTSGIIKTTAALSVLLSRGIGDTIRASLTQKPGESRV 280
Query: 353 -EIDPCRR-LANLGMR 366
E++ C+ L ++G+R
Sbjct: 281 IEVETCQLILQSMGLR 296
>TIGR_CMR|APH_0442 [details] [associations]
symbol:APH_0442 "4-hydroxy-3-methylbut-2-en-1-yl
diphosphate synthase" species:212042 "Anaplasma phagocytophilum HZ"
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=ISS] [GO:0046429 "4-hydroxy-3-methylbut-2-en-1-yl
diphosphate synthase activity" evidence=ISS] InterPro:IPR004588
InterPro:IPR016425 Pfam:PF04551 PIRSF:PIRSF004640
UniPathway:UPA00056 GO:GO:0005506 GO:GO:0051539 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0016114 GO:GO:0019288 KO:K03526
GO:GO:0046429 TIGRFAMs:TIGR00612 eggNOG:COG0821
ProtClustDB:PRK00366 HOGENOM:HOG000261017 OMA:RNFTPMV
RefSeq:YP_505045.1 STRING:Q2GKQ6 GeneID:3930512 KEGG:aph:APH_0442
PATRIC:20949504 BioCyc:APHA212042:GHPM-469-MONOMER Uniprot:Q2GKQ6
Length = 400
Score = 237 (88.5 bits), Expect = 4.0e-17, P = 4.0e-17
Identities = 108/362 (29%), Positives = 168/362 (46%)
Query: 86 RKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREA 145
R ++ V VG V IG HP+ VQ+M + ++EV+ +A +G++LVR+ +
Sbjct: 2 RVSQAVRVGKVTIGGGHPVVVQSMALGGSGSFDRDMQEVLALAREGSELVRVAINSDESI 61
Query: 146 DACFEIKNSLVQKNYNIPLVADI-HFAPSVALR----VAECFDKIRVNPGN--FADRRAQ 198
++ + LV+ ++ ++ + + LR A KIR+NPGN F D+R
Sbjct: 62 KVIPDMVDVLVKHGFDEKMIVGCGQYEVARLLRDYPTCAAALGKIRINPGNIGFGDKR-- 119
Query: 199 FEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIM--SYYGDSPR 256
D+ + EEV +E K VRIG N GSL D+++ D+
Sbjct: 120 --------DK------NFEEV----IEFAIKNDIPVRIGVNWGSL-DKVLVGKLMDDNAN 160
Query: 257 GMVESAFEFARICRKLDFHNFLFSMKA------SNPVVM---VQAYRLLVAEMYV---HG 304
V + + + + L + KA SN +V+ V R LVA +Y
Sbjct: 161 LPVPESADVVK-AKALVLSAITSAKKAEGIGLPSNRIVLSCKVSKVRDLVA-VYTALARQ 218
Query: 305 WDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLT----EPPEKEIDPCRR- 359
++ LHLG+TEAG G G + S GI LL G+GDT+RVSLT E +E+ C+
Sbjct: 219 SNHALHLGLTEAGAGLKGVVSSVAGIAHLLIMGIGDTVRVSLTSLTREGRTEEVKVCKEI 278
Query: 360 LANLGMRAAELQQGVAPFEEKHRHYFD-FQRR-SG---QLPIQKEGEEVDYRGVLHRDGS 414
L +LG+R Q P +R FD FQ+ SG + E + Y GV++ +
Sbjct: 279 LQSLGLRYFTAQSTSCP--GCNRTNFDVFQKLVSGVNKYMESNMEAWKKKYPGVVNMTVA 336
Query: 415 VL 416
V+
Sbjct: 337 VM 338
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.137 0.397 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 640 625 0.00090 120 3 11 22 0.38 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 21
No. of states in DFA: 612 (65 KB)
Total size of DFA: 307 KB (2158 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 56.05u 0.09s 56.14t Elapsed: 00:00:07
Total cpu time: 56.06u 0.09s 56.15t Elapsed: 00:00:08
Start: Tue May 21 12:01:08 2013 End: Tue May 21 12:01:16 2013