Query 006566
Match_columns 640
No_of_seqs 222 out of 886
Neff 4.1
Searched_HMMs 46136
Date Thu Mar 28 11:16:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006566.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006566hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02925 4-hydroxy-3-methylbut 100.0 7E-164 1E-168 1347.4 53.6 630 1-638 1-630 (733)
2 PRK02048 4-hydroxy-3-methylbut 100.0 3E-148 7E-153 1211.3 48.4 510 79-638 2-514 (611)
3 PRK00694 4-hydroxy-3-methylbut 100.0 3E-148 7E-153 1203.4 45.1 500 76-638 3-506 (606)
4 TIGR00612 ispG_gcpE 1-hydroxy- 100.0 3E-120 5E-125 939.2 31.9 310 85-426 1-339 (346)
5 PF04551 GcpE: GcpE protein; 100.0 3E-121 8E-126 952.2 24.1 321 88-426 1-349 (359)
6 PRK00366 ispG 4-hydroxy-3-meth 100.0 4E-117 9E-122 921.0 32.6 316 80-426 4-347 (360)
7 COG0821 gcpE 1-hydroxy-2-methy 100.0 2E-115 5E-120 898.7 31.4 312 83-426 1-341 (361)
8 PLN02925 4-hydroxy-3-methylbut 99.9 2.9E-26 6.4E-31 255.7 11.7 141 275-415 530-694 (733)
9 PRK02048 4-hydroxy-3-methylbut 99.9 3E-26 6.4E-31 252.9 10.4 140 275-415 418-578 (611)
10 PRK00694 4-hydroxy-3-methylbut 99.9 2.8E-24 6E-29 236.0 9.5 130 284-415 421-570 (606)
11 PRK04165 acetyl-CoA decarbonyl 98.6 4.6E-06 9.9E-11 92.2 21.7 194 78-318 51-273 (450)
12 PF04551 GcpE: GcpE protein; 98.4 3.7E-07 8.1E-12 97.6 6.8 90 538-638 175-264 (359)
13 cd00423 Pterin_binding Pterin 97.7 0.0053 1.1E-07 62.9 20.0 209 115-359 21-255 (258)
14 cd00739 DHPS DHPS subgroup of 97.6 0.013 2.8E-07 60.6 21.3 194 114-345 20-244 (257)
15 TIGR00284 dihydropteroate synt 97.5 0.0062 1.3E-07 68.7 19.7 223 90-362 137-372 (499)
16 TIGR01496 DHPS dihydropteroate 97.5 0.0085 1.8E-07 61.9 18.5 192 115-345 20-242 (257)
17 PRK07535 methyltetrahydrofolat 97.4 0.013 2.8E-07 60.8 18.2 191 115-343 22-227 (261)
18 PRK04452 acetyl-CoA decarbonyl 97.3 0.0087 1.9E-07 64.1 17.0 183 87-314 13-249 (319)
19 TIGR00381 cdhD CO dehydrogenas 97.2 0.011 2.4E-07 64.7 16.1 216 87-363 74-350 (389)
20 PRK13398 3-deoxy-7-phosphohept 97.2 0.041 8.8E-07 57.5 19.5 150 86-281 11-169 (266)
21 PRK12595 bifunctional 3-deoxy- 97.0 0.04 8.6E-07 59.9 17.8 192 87-332 103-316 (360)
22 PRK11613 folP dihydropteroate 96.9 0.12 2.7E-06 54.6 19.7 194 115-344 35-256 (282)
23 TIGR02082 metH 5-methyltetrahy 96.5 0.19 4.1E-06 62.2 20.2 171 115-321 365-557 (1178)
24 PRK09490 metH B12-dependent me 96.3 0.12 2.7E-06 63.9 17.7 170 115-320 381-572 (1229)
25 cd07939 DRE_TIM_NifV Streptomy 96.1 0.34 7.4E-06 49.7 17.0 159 114-301 16-178 (259)
26 TIGR00542 hxl6Piso_put hexulos 96.1 1.9 4.1E-05 44.1 22.3 157 101-286 2-186 (279)
27 PF00809 Pterin_bind: Pterin b 96.0 0.17 3.7E-06 50.7 13.9 169 115-313 16-203 (210)
28 PRK13753 dihydropteroate synth 95.9 0.9 1.9E-05 48.2 19.3 198 115-345 22-248 (279)
29 PF00682 HMGL-like: HMGL-like 95.6 0.24 5.2E-06 49.4 13.4 167 115-310 11-185 (237)
30 PRK08673 3-deoxy-7-phosphohept 95.6 0.82 1.8E-05 49.6 18.1 146 87-281 78-235 (335)
31 cd07948 DRE_TIM_HCS Saccharomy 95.5 0.81 1.8E-05 47.7 17.0 157 115-300 19-179 (262)
32 PRK00366 ispG 4-hydroxy-3-meth 95.4 0.032 6.9E-07 60.7 6.7 90 538-638 175-264 (360)
33 TIGR01361 DAHP_synth_Bsub phos 95.4 1.1 2.4E-05 46.7 17.6 144 88-280 11-166 (260)
34 PRK02412 aroD 3-dehydroquinate 95.4 1.3 2.9E-05 45.7 18.0 196 90-324 3-211 (253)
35 cd00740 MeTr MeTr subgroup of 95.3 1.7 3.6E-05 45.2 18.3 166 115-315 23-206 (252)
36 PRK13397 3-deoxy-7-phosphohept 95.1 2.8 6.2E-05 43.9 19.5 196 89-352 4-226 (250)
37 TIGR00612 ispG_gcpE 1-hydroxy- 95.1 0.05 1.1E-06 58.9 6.8 90 538-638 166-255 (346)
38 PRK00979 tetrahydromethanopter 95.0 3.7 8E-05 44.4 20.3 187 86-316 6-229 (308)
39 PRK13396 3-deoxy-7-phosphohept 94.9 2.9 6.2E-05 45.9 19.7 219 72-352 66-313 (352)
40 cd07940 DRE_TIM_IPMS 2-isoprop 94.9 2.6 5.6E-05 43.5 18.5 159 114-301 16-182 (268)
41 cd00958 DhnA Class I fructose- 94.7 1.1 2.4E-05 44.9 15.0 143 114-297 72-234 (235)
42 PRK04180 pyridoxal biosynthesi 94.2 0.9 2E-05 48.6 13.6 157 121-309 86-261 (293)
43 PF01261 AP_endonuc_2: Xylose 94.1 0.87 1.9E-05 42.9 12.0 144 125-289 2-171 (213)
44 PRK12457 2-dehydro-3-deoxyphos 93.8 1.3 2.8E-05 47.2 13.7 202 94-352 7-244 (281)
45 TIGR03234 OH-pyruv-isom hydrox 93.8 1.8 3.9E-05 43.5 14.3 146 115-288 14-183 (254)
46 cd03174 DRE_TIM_metallolyase D 93.7 2.5 5.4E-05 42.4 15.2 171 112-309 13-193 (265)
47 cd07943 DRE_TIM_HOA 4-hydroxy- 93.7 4.5 9.8E-05 41.6 17.3 151 111-301 15-180 (263)
48 PRK07028 bifunctional hexulose 93.6 1.3 2.8E-05 48.8 13.9 153 111-315 9-173 (430)
49 PRK13210 putative L-xylulose 5 93.5 2 4.4E-05 43.4 14.2 150 106-285 7-185 (284)
50 cd04727 pdxS PdxS is a subunit 93.2 3.5 7.5E-05 44.1 15.7 157 121-309 77-252 (283)
51 PRK11858 aksA trans-homoaconit 93.2 5.6 0.00012 43.5 17.8 166 114-309 22-191 (378)
52 TIGR01302 IMP_dehydrog inosine 93.1 0.72 1.6E-05 51.4 11.2 102 118-234 223-330 (450)
53 TIGR02660 nifV_homocitr homoci 93.1 7.8 0.00017 42.1 18.7 159 114-301 19-181 (365)
54 TIGR02631 xylA_Arthro xylose i 92.9 1.6 3.4E-05 48.0 13.2 157 113-285 27-218 (382)
55 PRK15129 L-Ala-D/L-Glu epimera 92.8 1.5 3.3E-05 46.4 12.6 139 98-240 111-277 (321)
56 PLN02746 hydroxymethylglutaryl 92.8 4.1 8.9E-05 44.5 16.0 165 89-285 45-220 (347)
57 PF05853 DUF849: Prokaryotic p 92.7 0.84 1.8E-05 47.8 10.4 212 116-362 24-254 (272)
58 PRK09997 hydroxypyruvate isome 92.7 9.5 0.00021 38.6 17.6 137 124-287 21-183 (258)
59 cd00019 AP2Ec AP endonuclease 92.6 13 0.00029 37.8 19.0 170 120-316 12-217 (279)
60 TIGR02090 LEU1_arch isopropylm 92.5 5 0.00011 43.6 16.2 158 114-300 18-179 (363)
61 cd07941 DRE_TIM_LeuA3 Desulfob 92.5 6.8 0.00015 40.8 16.6 163 114-302 16-191 (273)
62 TIGR01502 B_methylAsp_ase meth 92.3 1.1 2.4E-05 49.7 11.2 107 115-244 245-363 (408)
63 PTZ00314 inosine-5'-monophosph 91.8 1.4 3E-05 50.1 11.4 100 119-234 241-347 (495)
64 PRK09389 (R)-citramalate synth 91.7 10 0.00022 43.1 18.1 159 113-300 19-181 (488)
65 cd00502 DHQase_I Type I 3-dehy 91.4 1 2.2E-05 45.2 8.9 66 100-166 112-179 (225)
66 cd07944 DRE_TIM_HOA_like 4-hyd 90.7 12 0.00027 38.9 16.3 148 115-301 17-177 (266)
67 cd07938 DRE_TIM_HMGL 3-hydroxy 90.6 4.6 0.0001 42.3 13.1 169 114-310 16-197 (274)
68 PRK05198 2-dehydro-3-deoxyphos 90.4 2.2 4.8E-05 45.2 10.4 197 95-352 2-236 (264)
69 cd00452 KDPG_aldolase KDPG and 90.4 2.7 6E-05 41.2 10.6 90 115-238 13-104 (190)
70 cd04733 OYE_like_2_FMN Old yel 90.3 8.6 0.00019 41.1 15.1 206 90-307 4-252 (338)
71 cd03316 MR_like Mandelate race 90.3 2.1 4.6E-05 45.4 10.5 110 98-238 186-298 (357)
72 cd03315 MLE_like Muconate lact 90.1 2.8 6.1E-05 42.8 10.8 110 98-238 126-238 (265)
73 cd04729 NanE N-acetylmannosami 90.0 22 0.00048 35.5 18.0 177 101-344 10-205 (219)
74 PRK02412 aroD 3-dehydroquinate 90.0 1.5 3.4E-05 45.2 8.9 55 112-166 146-202 (253)
75 PRK07379 coproporphyrinogen II 89.8 8.4 0.00018 42.3 14.8 146 117-313 50-201 (400)
76 PRK13523 NADPH dehydrogenase N 89.8 18 0.00039 39.1 17.1 202 89-307 5-243 (337)
77 PRK09989 hypothetical protein; 89.6 6.7 0.00014 39.7 13.0 137 122-283 19-179 (258)
78 TIGR01093 aroD 3-dehydroquinat 89.4 1.9 4E-05 43.7 8.8 54 112-166 129-184 (228)
79 cd07947 DRE_TIM_Re_CS Clostrid 89.3 26 0.00056 37.1 17.4 145 116-284 19-172 (279)
80 TIGR00343 pyridoxal 5'-phospha 88.7 13 0.00028 40.0 14.7 156 121-309 79-255 (287)
81 COG1410 MetH Methionine syntha 88.7 6.2 0.00014 47.1 13.3 180 115-329 51-247 (842)
82 PRK13111 trpA tryptophan synth 88.2 7.4 0.00016 40.8 12.4 58 115-172 23-100 (258)
83 PLN02424 ketopantoate hydroxym 88.2 24 0.00051 38.8 16.5 178 84-307 91-311 (332)
84 PRK09249 coproporphyrinogen II 88.1 13 0.00027 41.6 14.8 151 115-314 81-238 (453)
85 PRK05799 coproporphyrinogen II 87.9 14 0.00031 39.7 14.7 143 116-305 35-180 (374)
86 PF04131 NanE: Putative N-acet 87.8 0.79 1.7E-05 46.4 4.9 66 118-186 51-117 (192)
87 cd02931 ER_like_FMN Enoate red 87.6 21 0.00046 39.1 16.1 209 90-307 4-268 (382)
88 PRK13209 L-xylulose 5-phosphat 87.6 35 0.00076 34.8 19.4 141 121-287 24-192 (283)
89 PLN02274 inosine-5'-monophosph 87.5 3.3 7.1E-05 47.2 10.1 71 119-195 248-326 (505)
90 cd04734 OYE_like_3_FMN Old yel 87.4 47 0.001 36.0 18.4 209 90-311 4-248 (343)
91 COG0821 gcpE 1-hydroxy-2-methy 87.4 1.1 2.4E-05 48.8 6.0 90 538-638 168-257 (361)
92 PRK08446 coproporphyrinogen II 87.3 15 0.00032 39.6 14.5 143 115-306 31-180 (350)
93 cd07945 DRE_TIM_CMS Leptospira 87.2 35 0.00075 36.1 16.8 146 115-285 16-170 (280)
94 TIGR00492 alr alanine racemase 87.1 8.8 0.00019 41.2 12.6 148 122-316 44-205 (367)
95 PRK01130 N-acetylmannosamine-6 86.5 37 0.00081 33.9 17.8 177 101-344 6-201 (221)
96 cd04747 OYE_like_5_FMN Old yel 86.4 35 0.00077 37.5 16.9 212 90-311 4-254 (361)
97 PRK08599 coproporphyrinogen II 86.3 17 0.00038 39.2 14.3 156 116-320 33-197 (377)
98 PF01487 DHquinase_I: Type I 3 86.1 2.9 6.3E-05 41.8 7.9 65 101-166 113-179 (224)
99 PRK14017 galactonate dehydrata 86.0 12 0.00026 40.7 13.0 122 115-239 123-287 (382)
100 PRK06843 inosine 5-monophospha 85.7 7.1 0.00015 43.6 11.3 69 118-191 152-227 (404)
101 cd06815 PLPDE_III_AR_like_1 Ty 85.6 26 0.00056 37.7 15.2 120 104-273 27-148 (353)
102 PRK12344 putative alpha-isopro 85.3 33 0.00072 39.5 16.6 146 114-285 23-181 (524)
103 cd04729 NanE N-acetylmannosami 85.1 3.4 7.4E-05 41.2 7.8 72 120-193 81-155 (219)
104 TIGR00262 trpA tryptophan synt 84.9 14 0.00031 38.4 12.4 102 116-242 22-151 (256)
105 PRK05628 coproporphyrinogen II 84.9 21 0.00045 38.7 14.1 144 117-306 39-190 (375)
106 cd04727 pdxS PdxS is a subunit 84.6 3.9 8.5E-05 43.7 8.2 115 119-245 120-275 (283)
107 cd00381 IMPDH IMPDH: The catal 84.5 15 0.00031 39.6 12.6 102 118-234 93-200 (325)
108 cd00945 Aldolase_Class_I Class 84.3 19 0.00041 33.9 12.0 89 101-192 48-153 (201)
109 cd02930 DCR_FMN 2,4-dienoyl-Co 84.1 46 0.001 35.9 16.2 206 90-311 4-243 (353)
110 cd00945 Aldolase_Class_I Class 84.1 20 0.00043 33.8 12.1 130 116-281 11-150 (201)
111 PRK06245 cofG FO synthase subu 84.0 29 0.00064 36.9 14.6 145 114-278 40-205 (336)
112 TIGR00035 asp_race aspartate r 83.9 23 0.0005 35.8 13.2 41 118-165 62-102 (229)
113 PRK01261 aroD 3-dehydroquinate 83.9 3.9 8.4E-05 42.2 7.7 76 89-169 7-84 (229)
114 cd04722 TIM_phosphate_binding 83.6 7.9 0.00017 35.8 9.0 78 108-193 5-96 (200)
115 PRK05660 HemN family oxidoredu 83.5 27 0.00058 38.1 14.3 144 117-306 40-189 (378)
116 TIGR01182 eda Entner-Doudoroff 83.4 12 0.00025 38.2 10.8 112 115-281 17-129 (204)
117 PRK00915 2-isopropylmalate syn 83.4 79 0.0017 36.3 18.5 160 114-302 22-189 (513)
118 cd03317 NAAAR N-acylamino acid 83.3 18 0.00039 38.6 12.7 116 117-237 138-285 (354)
119 cd03319 L-Ala-DL-Glu_epimerase 83.1 8.7 0.00019 40.3 10.1 94 116-237 189-285 (316)
120 PRK08255 salicylyl-CoA 5-hydro 83.0 35 0.00075 40.7 16.1 210 90-307 402-654 (765)
121 cd04728 ThiG Thiazole synthase 82.9 10 0.00022 39.9 10.4 134 72-229 67-229 (248)
122 cd02932 OYE_YqiM_FMN Old yello 82.8 72 0.0016 34.1 17.2 209 90-307 4-257 (336)
123 TIGR00538 hemN oxygen-independ 82.6 30 0.00065 38.6 14.5 144 116-306 82-233 (455)
124 PRK00208 thiG thiazole synthas 82.5 11 0.00024 39.8 10.4 139 66-229 62-229 (250)
125 TIGR03586 PseI pseudaminic aci 82.2 62 0.0013 35.3 16.3 118 114-279 13-166 (327)
126 TIGR00973 leuA_bact 2-isopropy 82.1 68 0.0015 36.7 17.3 165 114-302 19-186 (494)
127 TIGR03128 RuMP_HxlA 3-hexulose 82.0 12 0.00025 36.7 9.9 96 113-237 7-108 (206)
128 PRK04180 pyridoxal biosynthesi 81.9 7.3 0.00016 41.9 9.0 115 119-245 129-284 (293)
129 PRK08208 coproporphyrinogen II 81.8 38 0.00082 37.6 14.8 146 116-306 72-223 (430)
130 PLN02321 2-isopropylmalate syn 81.7 1.2E+02 0.0027 36.0 20.6 165 114-301 104-279 (632)
131 PRK14336 (dimethylallyl)adenos 81.6 46 0.00099 37.0 15.4 141 113-311 151-310 (418)
132 cd04724 Tryptophan_synthase_al 81.6 24 0.00052 36.2 12.4 106 115-246 11-144 (242)
133 TIGR01093 aroD 3-dehydroquinat 81.2 66 0.0014 32.6 17.6 144 115-289 9-164 (228)
134 PRK13347 coproporphyrinogen II 81.1 41 0.0009 37.6 15.0 144 116-306 83-234 (453)
135 PLN02274 inosine-5'-monophosph 81.1 3.4 7.4E-05 47.1 6.6 63 119-186 298-378 (505)
136 TIGR03128 RuMP_HxlA 3-hexulose 81.0 50 0.0011 32.3 13.9 66 123-194 68-139 (206)
137 PRK05692 hydroxymethylglutaryl 81.0 68 0.0015 34.0 15.8 160 114-301 22-194 (287)
138 TIGR01163 rpe ribulose-phospha 80.7 18 0.00039 35.1 10.7 96 114-239 7-112 (210)
139 KOG2367 Alpha-isopropylmalate 80.6 31 0.00067 39.8 13.5 133 112-295 73-209 (560)
140 PRK01130 N-acetylmannosamine-6 80.3 5.9 0.00013 39.5 7.4 72 120-193 77-151 (221)
141 PRK09432 metF 5,10-methylenete 79.9 89 0.0019 33.4 16.3 145 128-280 79-275 (296)
142 PRK09856 fructoselysine 3-epim 79.9 72 0.0016 32.3 19.2 142 120-286 15-185 (275)
143 COG1902 NemA NADH:flavin oxido 79.8 69 0.0015 35.4 15.8 204 90-307 9-254 (363)
144 PRK05096 guanosine 5'-monophos 79.7 3.4 7.3E-05 45.3 5.7 64 119-185 160-239 (346)
145 PRK07807 inosine 5-monophospha 79.5 4 8.7E-05 46.3 6.5 67 119-187 277-358 (479)
146 TIGR00343 pyridoxal 5'-phospha 79.4 15 0.00032 39.6 10.2 115 119-245 122-278 (287)
147 PLN03228 methylthioalkylmalate 79.4 1E+02 0.0022 35.6 17.5 165 114-301 102-278 (503)
148 PRK06464 phosphoenolpyruvate s 79.4 20 0.00044 43.2 12.5 157 119-299 621-790 (795)
149 TIGR00190 thiC thiamine biosyn 79.1 30 0.00064 39.1 12.7 142 110-282 69-222 (423)
150 PF05690 ThiG: Thiazole biosyn 79.1 3.4 7.5E-05 43.3 5.3 88 98-190 88-206 (247)
151 PRK12677 xylose isomerase; Pro 78.8 9.7 0.00021 42.0 9.0 155 112-285 28-217 (384)
152 smart00729 Elp3 Elongator prot 78.6 23 0.0005 32.9 10.3 52 219-288 69-125 (216)
153 cd04731 HisF The cyclase subun 78.6 70 0.0015 32.3 14.5 176 119-344 28-222 (243)
154 cd06830 PLPDE_III_ADC Type III 78.4 27 0.00058 38.5 12.2 111 122-274 99-223 (409)
155 cd03321 mandelate_racemase Man 78.0 12 0.00027 40.1 9.4 106 98-234 183-291 (355)
156 cd03316 MR_like Mandelate race 78.0 13 0.00028 39.5 9.5 67 116-185 139-215 (357)
157 TIGR00222 panB 3-methyl-2-oxob 77.9 81 0.0018 33.6 15.1 73 83-175 70-143 (263)
158 PRK02227 hypothetical protein; 77.5 12 0.00025 39.4 8.6 122 108-246 56-192 (238)
159 PF04131 NanE: Putative N-acet 77.5 4 8.6E-05 41.5 5.1 67 119-188 100-173 (192)
160 PTZ00314 inosine-5'-monophosph 77.2 6.5 0.00014 44.7 7.3 67 119-187 291-372 (495)
161 cd06556 ICL_KPHMT Members of t 77.2 76 0.0016 33.1 14.4 161 124-330 25-213 (240)
162 cd03329 MR_like_4 Mandelate ra 76.9 12 0.00025 40.5 8.8 68 115-185 142-215 (368)
163 PF03599 CdhD: CO dehydrogenas 76.9 17 0.00038 40.5 10.2 154 117-319 45-221 (386)
164 PF00478 IMPDH: IMP dehydrogen 76.6 18 0.00039 39.8 10.2 100 119-234 108-214 (352)
165 PRK01060 endonuclease IV; Prov 76.5 93 0.002 31.7 15.9 127 115-283 12-146 (281)
166 KOG2335 tRNA-dihydrouridine sy 76.2 22 0.00048 39.4 10.6 77 115-196 152-241 (358)
167 PRK06843 inosine 5-monophospha 76.2 6.7 0.00015 43.8 6.9 67 119-187 203-284 (404)
168 cd00308 enolase_like Enolase-s 76.1 25 0.00055 35.2 10.4 109 99-239 92-204 (229)
169 TIGR03471 HpnJ hopanoid biosyn 75.8 97 0.0021 34.7 15.8 64 223-292 289-358 (472)
170 PRK09490 metH B12-dependent me 75.8 17 0.00038 45.9 10.9 124 118-267 164-303 (1229)
171 COG5016 Pyruvate/oxaloacetate 75.7 76 0.0017 36.2 14.6 125 98-228 137-280 (472)
172 PF00478 IMPDH: IMP dehydrogen 75.6 5.3 0.00012 43.9 5.9 66 119-187 158-239 (352)
173 PRK09058 coproporphyrinogen II 75.4 75 0.0016 35.6 14.8 143 116-306 93-245 (449)
174 TIGR01362 KDO8P_synth 3-deoxy- 75.0 23 0.0005 37.6 10.1 152 142-352 59-228 (258)
175 PLN03033 2-dehydro-3-deoxyphos 75.0 33 0.00072 37.1 11.3 172 119-352 34-247 (290)
176 cd00430 PLPDE_III_AR Type III 74.9 45 0.00097 35.7 12.5 22 126-149 47-68 (367)
177 PRK05567 inosine 5'-monophosph 74.6 19 0.00041 40.7 10.0 67 120-190 229-301 (486)
178 PRK05826 pyruvate kinase; Prov 74.3 76 0.0016 36.3 14.6 155 117-302 172-338 (465)
179 cd03174 DRE_TIM_metallolyase D 74.1 37 0.0008 34.1 11.0 79 103-188 66-166 (265)
180 TIGR01302 IMP_dehydrog inosine 73.9 8.5 0.00018 43.1 7.1 66 120-187 275-355 (450)
181 PRK05718 keto-hydroxyglutarate 73.9 34 0.00074 35.0 10.8 112 114-279 23-134 (212)
182 PF00793 DAHP_synth_1: DAHP sy 73.5 19 0.0004 38.1 9.1 132 90-265 2-154 (270)
183 cd03327 MR_like_2 Mandelate ra 73.3 21 0.00046 38.2 9.6 68 115-185 119-197 (341)
184 cd03319 L-Ala-DL-Glu_epimerase 73.3 12 0.00025 39.4 7.5 82 99-184 117-202 (316)
185 PF07476 MAAL_C: Methylasparta 73.1 17 0.00037 38.2 8.4 101 115-237 86-195 (248)
186 TIGR01303 IMP_DH_rel_1 IMP deh 73.1 17 0.00037 41.4 9.2 100 120-234 226-331 (475)
187 COG2876 AroA 3-deoxy-D-arabino 73.1 15 0.00033 39.3 8.2 203 89-352 31-256 (286)
188 cd01137 PsaA Metal binding pro 73.1 19 0.00042 37.7 9.1 141 97-252 33-195 (287)
189 cd07937 DRE_TIM_PC_TC_5S Pyruv 73.0 1.3E+02 0.0028 31.6 15.5 146 115-301 18-188 (275)
190 TIGR01859 fruc_bis_ald_ fructo 72.9 67 0.0014 34.2 13.0 169 113-315 22-213 (282)
191 PRK06256 biotin synthase; Vali 72.4 1.3E+02 0.0028 31.9 15.1 73 114-187 90-168 (336)
192 cd04722 TIM_phosphate_binding 72.3 20 0.00044 33.0 8.1 88 101-195 57-150 (200)
193 TIGR03849 arch_ComA phosphosul 72.2 15 0.00032 38.6 7.8 74 219-306 42-115 (237)
194 cd02803 OYE_like_FMN_family Ol 72.2 30 0.00066 36.3 10.3 210 90-311 3-247 (327)
195 TIGR01303 IMP_DH_rel_1 IMP deh 72.1 8.4 0.00018 43.8 6.5 67 119-187 275-356 (475)
196 PRK05567 inosine 5'-monophosph 72.0 10 0.00022 42.9 7.1 67 119-187 278-359 (486)
197 TIGR01418 PEP_synth phosphoeno 71.7 31 0.00066 41.6 11.3 138 121-280 616-766 (782)
198 PRK07329 hypothetical protein; 71.5 19 0.00041 36.9 8.4 78 217-306 164-241 (246)
199 PRK05481 lipoyl synthase; Prov 71.1 1E+02 0.0022 32.7 13.9 165 115-307 80-266 (289)
200 PRK07114 keto-hydroxyglutarate 71.0 44 0.00096 34.5 10.9 118 114-281 23-140 (222)
201 cd03314 MAL Methylaspartate am 71.0 43 0.00093 37.0 11.4 117 98-238 189-319 (369)
202 cd03323 D-glucarate_dehydratas 70.8 28 0.0006 38.4 10.0 93 115-238 224-319 (395)
203 cd04732 HisA HisA. Phosphorib 70.4 76 0.0017 31.5 12.2 156 118-311 29-195 (234)
204 smart00729 Elp3 Elongator prot 70.2 87 0.0019 29.1 11.9 76 115-190 30-119 (216)
205 cd03322 rpsA The starvation se 70.2 33 0.00071 37.1 10.2 110 98-238 160-272 (361)
206 cd03325 D-galactonate_dehydrat 70.2 23 0.0005 38.1 9.1 58 159-238 225-285 (352)
207 cd03321 mandelate_racemase Man 70.2 8.9 0.00019 41.2 6.0 84 98-185 124-212 (355)
208 cd03320 OSBS o-Succinylbenzoat 69.9 28 0.0006 35.8 9.2 58 160-239 175-235 (263)
209 cd06808 PLPDE_III Type III Pyr 69.8 1.1E+02 0.0023 29.5 13.7 85 220-312 93-188 (211)
210 COG1082 IolE Sugar phosphate i 69.5 71 0.0015 32.0 11.9 153 113-289 13-184 (274)
211 PRK12653 fructose-6-phosphate 69.5 55 0.0012 33.8 11.1 81 98-188 50-131 (220)
212 PRK08207 coproporphyrinogen II 69.4 41 0.00088 38.4 11.2 81 223-306 271-351 (488)
213 cd06812 PLPDE_III_DSD_D-TA_lik 69.3 1.3E+02 0.0029 32.2 14.6 153 119-312 42-211 (374)
214 PRK07094 biotin synthase; Prov 68.9 1.4E+02 0.003 31.5 14.4 109 115-275 70-180 (323)
215 TIGR01928 menC_lowGC/arch o-su 68.6 65 0.0014 34.4 11.9 56 115-174 131-186 (324)
216 PRK06294 coproporphyrinogen II 68.3 42 0.00092 36.5 10.7 117 139-306 68-185 (370)
217 cd06824 PLPDE_III_Yggs_like Py 68.3 61 0.0013 32.7 11.1 156 119-316 36-203 (224)
218 PRK09722 allulose-6-phosphate 68.2 57 0.0012 33.9 11.0 151 102-298 60-220 (229)
219 PRK07107 inosine 5-monophospha 68.2 9.6 0.00021 43.6 6.0 68 119-187 293-380 (502)
220 cd07939 DRE_TIM_NifV Streptomy 68.1 43 0.00094 34.5 10.2 77 224-305 75-153 (259)
221 cd00956 Transaldolase_FSA Tran 67.8 56 0.0012 33.2 10.7 111 101-238 51-162 (211)
222 PRK08091 ribulose-phosphate 3- 67.5 26 0.00057 36.4 8.4 114 102-245 69-190 (228)
223 cd03318 MLE Muconate Lactonizi 67.4 1.4E+02 0.0031 32.1 14.3 160 114-299 140-314 (365)
224 PRK00043 thiE thiamine-phospha 67.2 11 0.00025 36.6 5.5 49 118-167 21-71 (212)
225 cd00331 IGPS Indole-3-glycerol 67.0 54 0.0012 32.6 10.3 95 116-238 29-128 (217)
226 TIGR01928 menC_lowGC/arch o-su 66.8 52 0.0011 35.1 10.8 88 123-238 191-281 (324)
227 PRK13352 thiamine biosynthesis 66.8 99 0.0021 35.2 13.1 140 110-282 69-225 (431)
228 TIGR02668 moaA_archaeal probab 66.7 37 0.00079 35.4 9.4 49 220-287 73-122 (302)
229 PRK05105 O-succinylbenzoate sy 66.7 44 0.00095 35.8 10.2 58 159-238 207-265 (322)
230 PRK10605 N-ethylmaleimide redu 66.6 2.1E+02 0.0044 31.5 17.4 209 89-311 5-268 (362)
231 PRK08745 ribulose-phosphate 3- 66.2 71 0.0015 33.0 11.2 113 102-246 63-183 (223)
232 cd03315 MLE_like Muconate lact 66.1 31 0.00068 35.3 8.7 67 115-184 84-154 (265)
233 cd00635 PLPDE_III_YBL036c_like 66.1 54 0.0012 32.8 10.2 40 104-151 26-65 (222)
234 cd03329 MR_like_4 Mandelate ra 66.0 71 0.0015 34.5 11.8 108 98-236 186-297 (368)
235 TIGR00559 pdxJ pyridoxine 5'-p 66.0 20 0.00044 37.6 7.3 80 144-241 108-188 (237)
236 PRK02901 O-succinylbenzoate sy 65.9 57 0.0012 35.4 10.9 104 98-237 131-238 (327)
237 PRK07534 methionine synthase I 65.7 32 0.00069 37.4 9.0 82 118-242 131-214 (336)
238 TIGR01125 MiaB-like tRNA modif 65.6 1.5E+02 0.0032 32.9 14.3 145 114-280 163-322 (430)
239 PRK14057 epimerase; Provisiona 65.5 72 0.0016 33.8 11.3 118 101-246 75-205 (254)
240 PRK12376 putative translaldola 64.9 27 0.00058 36.5 7.9 75 99-181 56-132 (236)
241 PRK14040 oxaloacetate decarbox 64.9 2.1E+02 0.0045 33.8 15.9 156 115-312 24-204 (593)
242 TIGR00539 hemN_rel putative ox 64.4 44 0.00096 36.0 9.8 143 117-306 33-182 (360)
243 PRK09057 coproporphyrinogen II 64.2 2E+02 0.0042 31.5 14.7 142 116-306 36-185 (380)
244 TIGR02109 PQQ_syn_pqqE coenzym 64.1 1.7E+02 0.0036 31.3 14.0 71 115-187 37-111 (358)
245 COG0854 PdxJ Pyridoxal phospha 64.1 38 0.00083 35.6 8.7 114 144-272 109-241 (243)
246 PRK02083 imidazole glycerol ph 63.8 44 0.00096 34.2 9.2 153 120-311 32-202 (253)
247 PRK09282 pyruvate carboxylase 63.6 2.7E+02 0.0058 32.9 16.5 163 107-311 16-202 (592)
248 cd06810 PLPDE_III_ODC_DapDC_li 63.2 61 0.0013 34.5 10.5 117 122-281 82-207 (368)
249 cd03318 MLE Muconate Lactonizi 63.1 52 0.0011 35.4 10.1 93 116-237 200-296 (365)
250 cd03325 D-galactonate_dehydrat 63.0 48 0.001 35.7 9.7 85 98-185 105-202 (352)
251 cd00381 IMPDH IMPDH: The catal 62.8 23 0.0005 38.1 7.3 75 119-195 144-242 (325)
252 TIGR03217 4OH_2_O_val_ald 4-hy 62.7 2.3E+02 0.0051 30.8 16.9 147 114-302 20-183 (333)
253 PRK08649 inosine 5-monophospha 62.7 23 0.0005 39.0 7.4 64 118-187 141-214 (368)
254 cd03324 rTSbeta_L-fuconate_deh 62.7 47 0.001 37.1 9.8 94 116-234 252-348 (415)
255 PRK08195 4-hyroxy-2-oxovalerat 62.5 2.4E+02 0.0051 30.8 15.8 144 115-300 22-182 (337)
256 PF13407 Peripla_BP_4: Peripla 62.4 85 0.0019 30.7 10.6 129 147-302 16-150 (257)
257 PRK06015 keto-hydroxyglutarate 62.3 84 0.0018 32.1 10.8 113 115-281 13-125 (201)
258 cd04726 KGPDC_HPS 3-Keto-L-gul 62.3 40 0.00087 32.7 8.3 95 113-238 8-108 (202)
259 cd00003 PNPsynthase Pyridoxine 62.2 27 0.00058 36.7 7.3 80 144-241 108-188 (234)
260 COG2877 KdsA 3-deoxy-D-manno-o 62.0 21 0.00045 38.0 6.4 170 89-316 3-200 (279)
261 TIGR00875 fsa_talC_mipB fructo 62.0 14 0.00031 37.7 5.3 75 119-193 110-190 (213)
262 TIGR02666 moaA molybdenum cofa 61.8 99 0.0021 32.8 11.7 50 219-287 75-126 (334)
263 PRK05265 pyridoxine 5'-phospha 61.5 24 0.00053 37.1 6.9 80 143-241 110-190 (239)
264 PRK00311 panB 3-methyl-2-oxobu 60.8 2.3E+02 0.0049 30.2 14.0 163 120-324 3-212 (264)
265 PLN02623 pyruvate kinase 60.6 1E+02 0.0022 36.5 12.2 154 120-303 280-443 (581)
266 cd03320 OSBS o-Succinylbenzoat 60.3 44 0.00096 34.3 8.6 63 119-184 85-152 (263)
267 PRK11840 bifunctional sulfur c 60.3 2.7E+02 0.0058 30.8 14.7 151 106-299 137-300 (326)
268 PTZ00300 pyruvate kinase; Prov 60.2 54 0.0012 37.4 9.8 154 118-302 147-311 (454)
269 TIGR00510 lipA lipoate synthas 60.0 1.4E+02 0.003 32.3 12.4 140 116-280 92-242 (302)
270 TIGR01060 eno phosphopyruvate 59.5 32 0.00069 38.4 7.9 74 143-243 290-367 (425)
271 TIGR01305 GMP_reduct_1 guanosi 59.3 21 0.00045 39.4 6.2 67 119-188 159-241 (343)
272 cd06821 PLPDE_III_D-TA Type II 59.3 1.6E+02 0.0035 31.5 12.8 150 121-314 46-216 (361)
273 PRK13813 orotidine 5'-phosphat 59.3 1.3E+02 0.0029 29.8 11.5 127 113-280 11-146 (215)
274 TIGR01927 menC_gamma/gm+ o-suc 59.0 80 0.0017 33.6 10.4 58 159-238 204-264 (307)
275 PRK07328 histidinol-phosphatas 58.9 22 0.00047 36.8 6.1 78 217-306 176-253 (269)
276 TIGR01304 IMP_DH_rel_2 IMP deh 58.6 35 0.00077 37.8 7.9 68 118-191 142-219 (369)
277 cd03313 enolase Enolase: Enola 58.6 98 0.0021 34.5 11.4 100 115-243 261-366 (408)
278 PRK12928 lipoyl synthase; Prov 58.5 1.9E+02 0.0041 30.9 13.1 129 114-280 86-239 (290)
279 TIGR02026 BchE magnesium-proto 58.3 3.3E+02 0.0071 31.0 15.9 71 223-296 289-362 (497)
280 PRK06552 keto-hydroxyglutarate 58.2 89 0.0019 31.9 10.2 114 115-279 22-135 (213)
281 PRK07107 inosine 5-monophospha 57.9 59 0.0013 37.4 9.8 69 119-190 242-316 (502)
282 PRK10382 alkyl hydroperoxide r 57.7 27 0.00058 34.8 6.3 70 102-175 32-105 (187)
283 PRK05458 guanosine 5'-monophos 57.7 34 0.00073 37.3 7.5 64 120-188 150-230 (326)
284 cd02801 DUS_like_FMN Dihydrour 57.7 1.8E+02 0.004 28.6 12.2 152 157-344 50-212 (231)
285 TIGR00587 nfo apurinic endonuc 57.5 2.4E+02 0.0052 29.3 15.8 120 120-282 13-143 (274)
286 cd06292 PBP1_LacI_like_10 Liga 57.3 2E+02 0.0043 28.3 12.8 136 145-308 15-156 (273)
287 TIGR02082 metH 5-methyltetrahy 57.3 1.1E+02 0.0025 38.8 12.7 125 117-267 147-287 (1178)
288 PRK13585 1-(5-phosphoribosyl)- 57.3 1.7E+02 0.0036 29.5 11.9 172 120-338 34-216 (241)
289 TIGR03822 AblA_like_2 lysine-2 56.7 93 0.002 33.4 10.5 97 219-317 154-272 (321)
290 PLN02489 homocysteine S-methyl 56.7 62 0.0013 35.1 9.3 46 120-168 169-215 (335)
291 PRK13361 molybdenum cofactor b 56.5 92 0.002 33.2 10.4 50 219-287 77-128 (329)
292 TIGR02494 PFLE_PFLC glycyl-rad 56.5 40 0.00087 34.9 7.6 48 220-287 143-190 (295)
293 PTZ00081 enolase; Provisional 56.4 47 0.001 37.6 8.6 80 142-246 308-391 (439)
294 TIGR02534 mucon_cyclo muconate 56.2 2.1E+02 0.0045 31.0 13.1 85 98-185 123-213 (368)
295 COG1830 FbaB DhnA-type fructos 56.1 79 0.0017 33.9 9.6 91 120-235 99-208 (265)
296 cd04728 ThiG Thiazole synthase 56.0 2.8E+02 0.0061 29.6 15.2 148 107-299 64-226 (248)
297 TIGR01306 GMP_reduct_2 guanosi 55.7 19 0.00042 39.1 5.2 62 120-187 147-226 (321)
298 COG0646 MetH Methionine syntha 55.7 1.9E+02 0.0041 31.8 12.4 151 117-296 142-308 (311)
299 cd03016 PRX_1cys Peroxiredoxin 55.5 40 0.00086 33.5 7.1 57 112-169 40-97 (203)
300 PRK05588 histidinol-phosphatas 55.2 56 0.0012 33.4 8.3 81 216-309 164-244 (255)
301 COG0635 HemN Coproporphyrinoge 55.0 1E+02 0.0023 34.5 10.9 83 224-313 140-223 (416)
302 PRK14016 cyanophycin synthetas 54.5 27 0.00059 41.6 6.7 20 222-242 164-183 (727)
303 PRK14862 rimO ribosomal protei 54.4 3.3E+02 0.0071 30.6 14.6 29 114-142 167-195 (440)
304 PRK00278 trpC indole-3-glycero 54.4 2.2E+02 0.0047 29.8 12.5 74 115-192 117-191 (260)
305 cd04823 ALAD_PBGS_aspartate_ri 54.3 21 0.00046 38.9 5.2 49 115-166 135-188 (320)
306 PRK12655 fructose-6-phosphate 54.2 2.1E+02 0.0045 29.7 12.1 78 98-185 50-128 (220)
307 cd01019 ZnuA Zinc binding prot 54.1 1.2E+02 0.0027 31.8 10.7 138 98-252 20-197 (286)
308 cd03322 rpsA The starvation se 54.0 62 0.0014 35.0 8.8 63 115-185 125-189 (361)
309 PRK05904 coproporphyrinogen II 53.9 97 0.0021 33.7 10.3 81 223-306 105-185 (353)
310 PF04476 DUF556: Protein of un 53.8 1.7E+02 0.0036 31.0 11.4 108 122-246 71-192 (235)
311 TIGR03551 F420_cofH 7,8-dideme 53.7 1.6E+02 0.0035 31.7 11.7 50 113-166 68-123 (343)
312 PRK00077 eno enolase; Provisio 53.4 1.6E+02 0.0034 33.1 12.0 101 115-244 261-367 (425)
313 cd06826 PLPDE_III_AR2 Type III 53.4 2.5E+02 0.0054 30.5 13.2 48 124-180 45-92 (365)
314 PRK14041 oxaloacetate decarbox 53.3 4.1E+02 0.0088 30.6 15.9 155 115-311 22-201 (467)
315 PRK05458 guanosine 5'-monophos 53.3 51 0.0011 36.0 8.0 69 118-192 96-174 (326)
316 PF01261 AP_endonuc_2: Xylose 53.0 41 0.00089 31.6 6.5 105 199-305 9-126 (213)
317 PRK00278 trpC indole-3-glycero 52.9 82 0.0018 32.9 9.2 86 121-234 73-163 (260)
318 cd02803 OYE_like_FMN_family Ol 52.7 85 0.0018 33.0 9.3 94 98-196 205-319 (327)
319 cd03327 MR_like_2 Mandelate ra 52.7 71 0.0015 34.3 8.9 54 159-234 220-276 (341)
320 cd04725 OMP_decarboxylase_like 52.5 2.2E+02 0.0048 28.7 11.9 139 113-283 6-152 (216)
321 PRK05301 pyrroloquinoline quin 52.5 1.1E+02 0.0023 33.1 10.3 50 219-286 78-127 (378)
322 PRK14042 pyruvate carboxylase 52.1 39 0.00084 39.7 7.3 74 108-186 144-227 (596)
323 PRK12656 fructose-6-phosphate 52.1 1.8E+02 0.0039 30.2 11.3 79 98-186 51-131 (222)
324 cd04735 OYE_like_4_FMN Old yel 52.0 1E+02 0.0022 33.4 10.0 98 210-307 136-251 (353)
325 PRK15000 peroxidase; Provision 51.9 33 0.00072 34.3 5.9 68 102-169 35-107 (200)
326 cd01568 QPRTase_NadC Quinolina 51.9 46 0.001 35.0 7.2 64 120-187 190-254 (269)
327 PRK08883 ribulose-phosphate 3- 51.8 2.9E+02 0.0062 28.4 15.6 117 102-246 59-179 (220)
328 TIGR01949 AroFGH_arch predicte 51.7 2.1E+02 0.0047 29.5 11.9 145 113-309 34-195 (258)
329 cd03328 MR_like_3 Mandelate ra 51.4 81 0.0017 34.1 9.1 69 144-237 221-292 (352)
330 PRK14335 (dimethylallyl)adenos 51.3 4E+02 0.0088 30.0 16.0 145 114-312 180-345 (455)
331 TIGR00875 fsa_talC_mipB fructo 51.3 1.8E+02 0.0039 29.9 11.1 81 102-192 52-133 (213)
332 PRK14469 ribosomal RNA large s 51.3 68 0.0015 34.7 8.5 104 116-237 190-320 (343)
333 PLN02428 lipoic acid synthase 51.1 3.7E+02 0.008 29.9 14.1 138 115-279 130-281 (349)
334 PRK14332 (dimethylallyl)adenos 51.0 2.3E+02 0.005 32.0 12.8 137 113-307 181-334 (449)
335 PRK05301 pyrroloquinoline quin 50.8 3.5E+02 0.0077 29.2 14.0 137 115-280 46-189 (378)
336 PRK12581 oxaloacetate decarbox 50.7 43 0.00094 38.3 7.2 81 108-189 153-241 (468)
337 CHL00162 thiG thiamin biosynth 50.6 39 0.00084 36.2 6.3 90 100-194 104-224 (267)
338 TIGR02109 PQQ_syn_pqqE coenzym 50.6 99 0.0021 33.0 9.5 52 218-287 68-119 (358)
339 PRK01362 putative translaldola 50.5 31 0.00067 35.4 5.5 92 119-214 110-210 (214)
340 PRK07455 keto-hydroxyglutarate 50.3 94 0.002 30.9 8.7 89 115-238 21-112 (187)
341 TIGR01306 GMP_reduct_2 guanosi 50.3 1.6E+02 0.0035 32.2 11.1 69 118-192 93-171 (321)
342 cd04824 eu_ALAD_PBGS_cysteine_ 50.2 22 0.00047 38.8 4.5 49 115-166 134-188 (320)
343 PLN02591 tryptophan synthase 50.1 1.6E+02 0.0034 31.0 10.7 98 115-238 13-138 (250)
344 TIGR01579 MiaB-like-C MiaB-lik 49.7 3.8E+02 0.0082 29.5 14.1 141 113-306 165-320 (414)
345 TIGR00089 RNA modification enz 49.6 3.6E+02 0.0078 29.8 13.9 29 113-141 166-194 (429)
346 PRK09283 delta-aminolevulinic 49.5 23 0.00049 38.8 4.5 50 114-166 137-191 (323)
347 PLN02980 2-oxoglutarate decarb 49.3 4.4E+02 0.0096 34.8 16.5 157 115-300 1089-1265(1655)
348 PRK15072 bifunctional D-altron 49.3 90 0.002 34.4 9.2 66 145-237 246-314 (404)
349 cd04726 KGPDC_HPS 3-Keto-L-gul 49.2 1E+02 0.0022 29.9 8.6 79 101-191 53-136 (202)
350 TIGR02534 mucon_cyclo muconate 49.0 1.2E+02 0.0027 32.7 10.1 66 145-237 227-295 (368)
351 PRK07998 gatY putative fructos 48.9 3.7E+02 0.0081 29.0 13.4 162 115-311 26-204 (283)
352 PLN02537 diaminopimelate decar 48.8 2.3E+02 0.0051 31.0 12.3 30 122-154 100-129 (410)
353 cd07942 DRE_TIM_LeuA Mycobacte 48.7 2.6E+02 0.0057 29.9 12.2 109 114-233 19-135 (284)
354 cd02809 alpha_hydroxyacid_oxid 48.6 1.1E+02 0.0024 32.4 9.4 79 102-188 116-200 (299)
355 cd01335 Radical_SAM Radical SA 48.5 1.8E+02 0.0038 26.5 9.7 51 219-287 60-112 (204)
356 cd00622 PLPDE_III_ODC Type III 48.4 2.5E+02 0.0054 30.0 12.2 112 122-273 39-152 (362)
357 PF01297 TroA: Periplasmic sol 48.4 38 0.00083 34.3 5.8 136 98-252 15-168 (256)
358 TIGR01212 radical SAM protein, 48.3 1.7E+02 0.0036 31.2 10.7 83 221-306 126-208 (302)
359 PRK07807 inosine 5-monophospha 48.2 1.1E+02 0.0023 35.2 9.8 98 120-234 228-333 (479)
360 smart00518 AP2Ec AP endonuclea 48.1 3.1E+02 0.0068 27.8 15.5 87 122-242 14-107 (273)
361 cd03326 MR_like_1 Mandelate ra 48.1 1E+02 0.0022 34.0 9.4 99 116-242 217-322 (385)
362 PF00150 Cellulase: Cellulase 48.0 27 0.00058 34.7 4.6 68 101-171 5-85 (281)
363 PRK05848 nicotinate-nucleotide 47.6 57 0.0012 34.8 7.1 64 120-186 191-255 (273)
364 KOG1577 Aldo/keto reductase fa 47.6 1.5E+02 0.0032 32.4 10.2 67 220-295 190-267 (300)
365 PF00923 Transaldolase: Transa 47.5 27 0.00058 36.8 4.7 77 99-181 74-151 (287)
366 PRK13789 phosphoribosylamine-- 47.5 37 0.0008 37.8 6.0 30 165-194 10-41 (426)
367 PRK15440 L-rhamnonate dehydrat 47.4 1.1E+02 0.0025 33.9 9.7 71 144-242 247-320 (394)
368 cd00394 Clp_protease_like Case 47.4 1.8E+02 0.004 27.2 9.9 108 117-227 13-129 (161)
369 PRK00955 hypothetical protein; 47.3 2.5E+02 0.0053 33.6 12.7 78 233-313 436-515 (620)
370 PRK13384 delta-aminolevulinic 47.3 26 0.00056 38.3 4.5 50 114-166 139-193 (322)
371 PRK01033 imidazole glycerol ph 47.2 2.6E+02 0.0057 29.0 11.8 65 119-188 31-103 (258)
372 PRK13575 3-dehydroquinate dehy 47.1 1E+02 0.0023 31.9 8.8 54 112-166 136-191 (238)
373 TIGR01458 HAD-SF-IIA-hyp3 HAD- 47.0 56 0.0012 33.6 6.8 60 219-278 25-90 (257)
374 cd07018 S49_SppA_67K_type Sign 46.8 81 0.0018 31.9 7.8 114 114-228 28-180 (222)
375 PRK09485 mmuM homocysteine met 46.8 1.2E+02 0.0026 32.3 9.5 81 121-242 143-224 (304)
376 PRK14338 (dimethylallyl)adenos 46.7 4.5E+02 0.0098 29.7 14.3 141 114-307 183-338 (459)
377 PRK15452 putative protease; Pr 46.6 2.2E+02 0.0048 32.4 11.8 137 172-355 13-150 (443)
378 cd06828 PLPDE_III_DapDC Type I 46.2 4E+02 0.0086 28.4 13.3 31 122-154 85-115 (373)
379 PRK13191 putative peroxiredoxi 46.1 47 0.001 33.7 6.0 57 112-169 48-105 (215)
380 COG0800 Eda 2-keto-3-deoxy-6-p 46.0 1.5E+02 0.0033 30.8 9.6 161 115-342 22-184 (211)
381 PLN00191 enolase 45.9 70 0.0015 36.5 7.9 99 114-243 294-398 (457)
382 TIGR00676 fadh2 5,10-methylene 45.9 2.6E+02 0.0057 29.3 11.6 173 115-315 12-194 (272)
383 PRK10605 N-ethylmaleimide redu 45.8 73 0.0016 34.9 7.8 77 115-196 245-329 (362)
384 cd02932 OYE_YqiM_FMN Old yello 45.7 2.6E+02 0.0055 30.0 11.7 146 173-344 158-319 (336)
385 PF06180 CbiK: Cobalt chelatas 45.6 1.3E+02 0.0028 32.0 9.3 155 118-319 17-184 (262)
386 PF01081 Aldolase: KDPG and KH 45.5 1.6E+02 0.0035 30.0 9.6 113 114-280 16-128 (196)
387 PLN02520 bifunctional 3-dehydr 45.5 4.2E+02 0.0091 30.7 14.1 137 117-290 34-182 (529)
388 cd00331 IGPS Indole-3-glycerol 45.4 1.4E+02 0.0031 29.6 9.2 64 122-189 85-149 (217)
389 PRK01362 putative translaldola 45.1 2.7E+02 0.0059 28.7 11.3 81 102-192 52-133 (214)
390 cd06841 PLPDE_III_MccE_like Ty 45.1 2.3E+02 0.005 30.6 11.4 79 221-303 112-199 (379)
391 COG4359 Uncharacterized conser 44.9 24 0.00053 36.3 3.7 17 220-236 78-94 (220)
392 PRK12331 oxaloacetate decarbox 44.9 5.3E+02 0.011 29.5 15.5 155 115-311 23-202 (448)
393 cd00288 Pyruvate_Kinase Pyruva 44.8 3E+02 0.0064 31.8 12.6 179 91-302 148-338 (480)
394 PRK00115 hemE uroporphyrinogen 44.7 2.7E+02 0.0059 29.9 11.8 48 118-165 186-243 (346)
395 PLN02540 methylenetetrahydrofo 44.6 6.1E+02 0.013 30.1 15.5 155 118-275 44-263 (565)
396 TIGR02329 propionate_PrpR prop 44.6 4.4E+02 0.0096 30.6 14.1 115 114-253 36-164 (526)
397 PF00682 HMGL-like: HMGL-like 44.4 1.5E+02 0.0033 29.7 9.3 79 220-303 69-149 (237)
398 PF01729 QRPTase_C: Quinolinat 44.4 53 0.0012 32.5 5.9 50 121-173 90-139 (169)
399 cd03328 MR_like_3 Mandelate ra 44.3 1.2E+02 0.0025 32.9 9.0 66 116-184 138-207 (352)
400 PRK14024 phosphoribosyl isomer 44.2 3.1E+02 0.0068 28.1 11.7 150 120-311 34-195 (241)
401 TIGR00676 fadh2 5,10-methylene 44.2 48 0.001 34.6 5.9 53 115-169 141-193 (272)
402 PRK14725 pyruvate kinase; Prov 43.9 5.4E+02 0.012 30.9 14.6 142 128-303 442-596 (608)
403 PF13344 Hydrolase_6: Haloacid 43.9 55 0.0012 29.2 5.5 55 220-274 19-79 (101)
404 TIGR03470 HpnH hopanoid biosyn 43.9 57 0.0012 34.8 6.5 71 123-194 115-204 (318)
405 PRK12656 fructose-6-phosphate 43.7 51 0.0011 34.1 5.9 75 119-193 114-194 (222)
406 cd01016 TroA Metal binding pro 43.0 1.7E+02 0.0038 30.5 9.8 168 98-280 18-217 (276)
407 PRK14334 (dimethylallyl)adenos 43.0 2.8E+02 0.006 31.1 11.9 28 114-141 166-193 (440)
408 PF04055 Radical_SAM: Radical 42.8 1.5E+02 0.0032 26.4 8.1 68 223-294 92-164 (166)
409 COG5012 Predicted cobalamin bi 42.8 43 0.00093 35.1 5.1 51 524-578 141-191 (227)
410 PRK00208 thiG thiazole synthas 42.7 4.5E+02 0.0099 28.1 15.2 146 108-299 65-226 (250)
411 PRK12331 oxaloacetate decarbox 42.5 78 0.0017 35.9 7.6 77 108-189 144-232 (448)
412 PRK15072 bifunctional D-altron 42.4 1.6E+02 0.0034 32.6 9.8 67 115-184 126-231 (404)
413 TIGR03820 lys_2_3_AblA lysine- 42.4 1.4E+02 0.0031 33.8 9.5 91 220-312 174-285 (417)
414 PRK14329 (dimethylallyl)adenos 42.2 4.4E+02 0.0096 29.9 13.4 30 113-142 195-224 (467)
415 TIGR03278 methan_mark_10 putat 42.2 53 0.0011 36.8 6.1 53 219-289 90-144 (404)
416 PRK13189 peroxiredoxin; Provis 42.2 52 0.0011 33.5 5.6 67 102-169 36-107 (222)
417 cd00384 ALAD_PBGS Porphobilino 42.2 33 0.00072 37.4 4.4 50 114-166 129-183 (314)
418 TIGR01108 oadA oxaloacetate de 42.1 6.5E+02 0.014 29.8 15.7 155 115-311 18-197 (582)
419 TIGR03471 HpnJ hopanoid biosyn 42.0 4.6E+02 0.01 29.4 13.5 143 114-281 226-374 (472)
420 TIGR00706 SppA_dom signal pept 42.0 1.3E+02 0.0028 30.1 8.3 74 117-191 15-92 (207)
421 PLN02540 methylenetetrahydrofo 41.9 40 0.00087 39.4 5.3 107 76-187 113-224 (565)
422 cd02933 OYE_like_FMN Old yello 41.7 1.7E+02 0.0036 31.8 9.7 99 210-311 144-260 (338)
423 cd03145 GAT1_cyanophycinase Ty 41.7 2.2E+02 0.0048 28.8 10.0 116 115-251 12-133 (217)
424 PLN02433 uroporphyrinogen deca 41.5 3.7E+02 0.0081 29.0 12.2 54 118-171 179-242 (345)
425 PRK11320 prpB 2-methylisocitra 41.4 48 0.001 35.6 5.5 48 115-169 163-210 (292)
426 PRK14456 ribosomal RNA large s 41.4 1.9E+02 0.004 32.2 10.1 109 120-242 220-353 (368)
427 PF01936 NYN: NYN domain; Int 41.2 53 0.0012 29.7 5.1 108 116-250 21-138 (146)
428 PF02219 MTHFR: Methylenetetra 41.2 29 0.00064 36.3 3.8 55 113-169 154-208 (287)
429 PRK09997 hydroxypyruvate isome 41.1 2.3E+02 0.0049 28.8 10.1 58 217-284 84-145 (258)
430 TIGR03247 glucar-dehydr glucar 41.1 1.4E+02 0.0031 33.7 9.3 65 116-184 180-250 (441)
431 PF00834 Ribul_P_3_epim: Ribul 41.0 45 0.00098 33.8 4.9 110 101-241 57-174 (201)
432 cd02809 alpha_hydroxyacid_oxid 40.9 81 0.0018 33.3 7.0 66 119-187 181-255 (299)
433 COG1456 CdhE CO dehydrogenase/ 40.9 4.4E+02 0.0094 30.0 12.5 227 87-369 65-330 (467)
434 cd01020 TroA_b Metal binding p 40.8 4.3E+02 0.0093 27.3 14.1 177 98-299 19-230 (264)
435 TIGR03699 mena_SCO4550 menaqui 40.8 4.4E+02 0.0096 28.1 12.6 25 114-138 71-95 (340)
436 cd04733 OYE_like_2_FMN Old yel 40.8 1.2E+02 0.0026 32.5 8.4 94 98-196 213-330 (338)
437 PRK08195 4-hyroxy-2-oxovalerat 40.8 68 0.0015 34.9 6.6 49 121-170 91-140 (337)
438 TIGR01574 miaB-methiolase tRNA 40.8 4.2E+02 0.0091 29.6 12.8 29 114-142 173-201 (438)
439 PLN02520 bifunctional 3-dehydr 40.7 95 0.0021 35.8 8.0 52 112-166 146-197 (529)
440 PF00490 ALAD: Delta-aminolevu 40.6 29 0.00062 38.0 3.7 47 117-166 146-193 (324)
441 PRK13599 putative peroxiredoxi 40.1 64 0.0014 32.8 5.9 55 114-169 45-100 (215)
442 TIGR02090 LEU1_arch isopropylm 40.0 1.9E+02 0.0042 31.6 9.9 78 222-304 75-154 (363)
443 TIGR00735 hisF imidazoleglycer 39.9 2.5E+02 0.0054 28.9 10.2 178 120-343 32-227 (254)
444 TIGR02317 prpB methylisocitrat 39.8 49 0.0011 35.4 5.2 48 115-169 158-205 (285)
445 TIGR01108 oadA oxaloacetate de 39.8 90 0.0019 36.6 7.7 74 108-186 139-222 (582)
446 PRK13303 L-aspartate dehydroge 39.8 2.6E+02 0.0057 29.1 10.5 128 172-351 75-212 (265)
447 cd06333 PBP1_ABC-type_HAAT_lik 39.8 4.2E+02 0.0091 26.9 13.9 72 109-187 169-241 (312)
448 PRK08898 coproporphyrinogen II 39.7 5.6E+02 0.012 28.3 14.7 140 116-304 54-201 (394)
449 PRK14041 oxaloacetate decarbox 39.7 78 0.0017 36.2 7.0 77 108-189 143-231 (467)
450 TIGR00542 hxl6Piso_put hexulos 39.7 3E+02 0.0065 28.2 10.8 76 214-299 90-171 (279)
451 TIGR01305 GMP_reduct_1 guanosi 39.6 2.5E+02 0.0054 31.3 10.5 75 118-196 106-188 (343)
452 PRK02714 O-succinylbenzoate sy 39.6 2.5E+02 0.0055 30.0 10.5 55 159-238 215-272 (320)
453 TIGR00677 fadh2_euk methylenet 39.3 60 0.0013 34.4 5.8 82 76-168 114-196 (281)
454 cd00530 PTE Phosphotriesterase 38.7 4.2E+02 0.0091 27.1 11.7 131 113-276 27-177 (293)
455 cd00959 DeoC 2-deoxyribose-5-p 38.7 4.1E+02 0.0089 26.5 12.4 136 124-299 23-170 (203)
456 cd07940 DRE_TIM_IPMS 2-isoprop 38.3 1.5E+02 0.0034 30.6 8.5 81 103-184 129-217 (268)
457 COG4948 L-alanine-DL-glutamate 38.2 1.5E+02 0.0033 32.0 8.7 87 97-186 122-215 (372)
458 cd02933 OYE_like_FMN Old yello 38.2 1.1E+02 0.0024 33.1 7.7 77 115-196 238-322 (338)
459 PF00215 OMPdecase: Orotidine 38.0 4.4E+02 0.0094 26.6 11.4 138 113-280 8-159 (226)
460 PRK09250 fructose-bisphosphate 38.0 75 0.0016 35.2 6.4 156 51-234 9-195 (348)
461 cd06556 ICL_KPHMT Members of t 37.9 59 0.0013 33.9 5.3 45 114-166 152-196 (240)
462 cd04747 OYE_like_5_FMN Old yel 37.9 1.5E+02 0.0032 32.7 8.6 77 115-196 232-336 (361)
463 TIGR02634 xylF D-xylose ABC tr 37.8 4.3E+02 0.0094 27.1 11.6 68 146-240 15-87 (302)
464 CHL00200 trpA tryptophan synth 37.6 5.2E+02 0.011 27.4 12.5 106 116-247 27-160 (263)
465 TIGR01182 eda Entner-Doudoroff 37.6 1.1E+02 0.0023 31.4 7.0 65 120-194 69-134 (204)
466 PF02126 PTE: Phosphotriestera 37.6 1.1E+02 0.0023 33.2 7.4 149 116-299 36-206 (308)
467 COG0036 Rpe Pentose-5-phosphat 37.6 1.4E+02 0.0031 31.2 7.9 129 100-279 60-196 (220)
468 PF02784 Orn_Arg_deC_N: Pyrido 37.5 3.1E+02 0.0066 27.8 10.3 50 220-275 143-195 (251)
469 PRK12330 oxaloacetate decarbox 37.5 90 0.0019 36.1 7.1 73 112-189 149-235 (499)
470 PRK14455 ribosomal RNA large s 37.5 1.8E+02 0.004 31.9 9.3 113 115-242 200-337 (356)
471 PRK15014 6-phospho-beta-glucos 37.4 1.1E+02 0.0025 34.8 7.9 52 220-271 112-164 (477)
472 TIGR02635 RhaI_grampos L-rhamn 37.4 2.5E+02 0.0055 31.4 10.3 122 219-346 70-210 (378)
473 PRK09875 putative hydrolase; P 37.3 5.5E+02 0.012 27.6 17.7 193 111-346 27-242 (292)
474 PF08901 DUF1847: Protein of u 37.1 81 0.0018 31.4 5.8 54 219-287 42-95 (157)
475 cd03013 PRX5_like Peroxiredoxi 37.0 94 0.002 29.6 6.2 54 114-175 46-103 (155)
476 cd06557 KPHMT-like Ketopantoat 36.9 5.4E+02 0.012 27.3 13.3 80 77-175 61-141 (254)
477 TIGR03470 HpnH hopanoid biosyn 36.8 1.4E+02 0.0031 31.9 8.1 57 218-275 87-164 (318)
478 PF01487 DHquinase_I: Type I 3 36.7 4.5E+02 0.0097 26.3 16.7 161 115-315 7-184 (224)
479 TIGR00288 conserved hypothetic 36.6 74 0.0016 31.6 5.5 115 121-271 43-158 (160)
480 TIGR01037 pyrD_sub1_fam dihydr 36.6 5.2E+02 0.011 27.0 12.4 149 91-280 3-189 (300)
481 cd06842 PLPDE_III_Y4yA_like Ty 36.6 3.1E+02 0.0066 30.5 10.9 138 120-305 49-203 (423)
482 cd01145 TroA_c Periplasmic bin 36.5 2.3E+02 0.005 28.1 9.1 139 98-253 19-185 (203)
483 PRK09140 2-dehydro-3-deoxy-6-p 36.5 3.6E+02 0.0078 27.3 10.6 90 115-238 19-111 (206)
484 COG0450 AhpC Peroxiredoxin [Po 36.5 81 0.0018 32.4 5.9 60 110-169 46-106 (194)
485 PTZ00170 D-ribulose-5-phosphat 36.4 4.9E+02 0.011 26.7 11.7 132 115-280 16-157 (228)
486 PRK00230 orotidine 5'-phosphat 36.3 4.9E+02 0.011 26.6 11.8 138 113-280 10-155 (230)
487 TIGR00222 panB 3-methyl-2-oxob 36.1 92 0.002 33.2 6.5 42 116-165 158-199 (263)
488 cd02811 IDI-2_FMN Isopentenyl- 36.0 2E+02 0.0044 31.0 9.2 84 101-189 52-148 (326)
489 PRK09432 metF 5,10-methylenete 36.0 79 0.0017 33.8 6.1 55 113-169 158-212 (296)
490 PRK14337 (dimethylallyl)adenos 35.8 6.8E+02 0.015 28.1 15.0 139 114-307 176-332 (446)
491 cd02930 DCR_FMN 2,4-dienoyl-Co 35.8 1.8E+02 0.0038 31.5 8.7 77 115-196 221-314 (353)
492 TIGR02319 CPEP_Pphonmut carbox 35.7 60 0.0013 35.0 5.1 48 115-169 162-209 (294)
493 PRK00748 1-(5-phosphoribosyl)- 35.7 4.6E+02 0.0099 26.1 12.6 154 119-311 31-195 (233)
494 KOG2550 IMP dehydrogenase/GMP 35.6 29 0.00062 39.5 2.8 47 120-168 302-361 (503)
495 PRK08005 epimerase; Validated 35.5 2.7E+02 0.0059 28.6 9.5 82 102-194 59-144 (210)
496 TIGR03569 NeuB_NnaB N-acetylne 35.5 6.4E+02 0.014 27.7 16.1 122 113-279 11-167 (329)
497 PRK10128 2-keto-3-deoxy-L-rham 35.2 5.1E+02 0.011 27.5 11.8 104 139-301 152-255 (267)
498 CHL00194 ycf39 Ycf39; Provisio 34.6 5.5E+02 0.012 26.7 12.0 126 124-279 17-142 (317)
499 COG0422 ThiC Thiamine biosynth 34.3 3.7E+02 0.0081 30.7 10.8 141 110-281 70-222 (432)
500 TIGR01210 conserved hypothetic 34.3 4.7E+02 0.01 28.1 11.5 53 223-280 119-174 (313)
No 1
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=100.00 E-value=6.9e-164 Score=1347.43 Aligned_cols=630 Identities=86% Similarity=1.321 Sum_probs=580.1
Q ss_pred CCCCCCccccCCcccccCCCcccccccceeeeceeeeecccceeeeeccCCCCcccccccccCCCCCCCccCcccccccc
Q 006566 1 MATGTLPASFPGLKSRDSGLGFAKSVDFVRVCDFRKFKSGRRRFTVIRNSSNSSSDIAELQPASEGSPLLVPRQKYCESI 80 (640)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Yc~s~ 80 (640)
||+|..|+++.+++.+..+.+|.+..+|.+. +++++.++.++. ++..++.++++++++++++.|.++||+|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Yc~s~ 72 (733)
T PLN02925 1 MATGVLPAPLSGLKTSDSKLGFGKSMDFVRI-------CDVRSVSVIRNS-NTGPDLVELQPASEGSPLLVPRQKYCESI 72 (733)
T ss_pred CCcCcCCccccceeccccccccccccchhhh-------hhhhhhhhhhcc-cccchhhcccccCCCCcccchhhhcCcch
Confidence 8999999999999999999999999999766 333455555553 56778999999999999999999999999
Q ss_pred ccccCCCceeEEEceeecCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCC
Q 006566 81 HKTVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNY 160 (640)
Q Consensus 81 ~~~~Rr~Tr~V~VG~v~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~ 160 (640)
|+|.||+||+|+||+|+|||+|||+|||||||+|+|+++||+||++|++|||||||+|||++++|+||++||++|+++|+
T Consensus 73 ~~~~Rr~Tr~V~VG~v~iGG~~PI~VQSMt~t~T~D~eatv~Qi~~l~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~ 152 (733)
T PLN02925 73 HKTVRRKTRTVMVGNVALGSEHPIRIQTMTTTDTKDVEATVDQVMRIADKGADIVRITVQGKKEADACFEIKNTLVQKGY 152 (733)
T ss_pred hccccccceEEEEcCEeECCCCceEEEecCCCCcccHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeeccCCCHHHHHHHhhhcCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCC
Q 006566 161 NIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNH 240 (640)
Q Consensus 161 ~iPLVADIHF~~~~Al~Aa~~v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNh 240 (640)
++||||||||+|++|++|+++|||||||||||++++|+|+.++||||||++||+||+++|.|||++||++|+||||||||
T Consensus 153 ~iPLVADIHF~~~~Al~a~~~vdkiRINPGN~~~~~k~F~~~eYtdeeY~~Ele~i~e~f~~~v~~ak~~~~~iRIGvN~ 232 (733)
T PLN02925 153 NIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEKLEYTEDDYQKELEHIEEVFTPLVEKCKKYGRAMRIGTNH 232 (733)
T ss_pred CCCEEEecCCCHHHHHHHHHhcCCeEECCcccCCccccccccccchhhhhhhHHHHHHHHHHHHHHHHHCCCCEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHhHHHHhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEEeCChhhHHHHHHHHHHHHHHcCCCcceEEEeecCCCCC
Q 006566 241 GSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGE 320 (640)
Q Consensus 241 GSLs~ril~ryGdtp~gMVeSAle~~~i~e~~~F~diviSmKsSn~~~mV~AyRlL~~~m~~~g~dyPLHLGVTEAG~ge 320 (640)
||||+|||+||||||+|||||||||++|||++||+||||||||||+++||+|||+|+++|+++|++|||||||||||+++
T Consensus 233 GSLs~ri~~~yGdtp~gmVeSAle~~~i~e~~~f~diviS~KsSn~~~~V~AyR~La~~L~~~g~~yPLhLgvTEAG~~e 312 (733)
T PLN02925 233 GSLSDRIMSYYGDSPRGMVESAFEFARICRKLDYHNFVFSMKASNPVVMVQAYRLLVAEMYVLGWDYPLHLGVTEAGEGE 312 (733)
T ss_pred cCchHHHHHHhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEEcCChHHHHHHHHHHHHHHHhcCCCCceEEEEecCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeehHHHHHHHhhhcCCcEEEeecCCCCchhhHHHHHHHhhcccCcccccCchhhHHhhcccccccccccccccccCC
Q 006566 321 DGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRLANLGMRAAELQQGVAPFEEKHRHYFDFQRRSGQLPIQKEG 400 (640)
Q Consensus 321 dGrIKSAiGIG~LL~DGIGDTIRVSLTedP~~Ei~va~~ILq~~~R~CGRt~dl~~~~~~i~~l~~~~~~vmgciVNGpG 400 (640)
+|+||||+|||+||.||||||||||||+||++|||||+.|+++..+.......+..+.+.-+++++++||....++|-.|
T Consensus 313 dg~IKSAigiGaLL~DGIGDTIRVSlt~dP~~Evpva~~Lv~~~~~~~~~~~~i~~~~~~~~d~~~~~RR~~~~~~~igg 392 (733)
T PLN02925 313 DGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEEEIDPCRRLANLGMKAAALQQGVAPFEEKHRDYFDFQRRTGQLPVQKEG 392 (733)
T ss_pred CceehhHHHHHHHHhcCCccEEEEECCCCchhhchHHHHHHHHHHhcccccccCCccccCCCCCCCcccccCCcccccCc
Confidence 99999999999999999999999999999999999999999944443222222344444456788889988877888777
Q ss_pred cccccccccccCCeEeeeccccccccchhhhhhhhhhhhhCCCCCCCCCcceEecCCCCCCCchhHHHHhHHhhhcccce
Q 006566 401 EEVDYRGVLHRDGSVLMSVSLDQLKAPELLYKSLAAKLVVGMPFKDLATVDSILLRELPSVDDHDARLALKRLVDISMGV 480 (640)
Q Consensus 401 E~AD~g~V~~~~GkVv~~v~~~~l~~~~~~y~~~~~k~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~lk~l~~~~~~~ 480 (640)
+..++..+.+++|.|+..++.++|..++++|+.+++++.+|+++++.+++|+||++++|+..+.+.+.++++++|+++|+
T Consensus 393 ~~~p~~vi~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~D~i~l~~~~~~~~~~~~~~~~~~~d~~~~~ 472 (733)
T PLN02925 393 EEVDYRNVLHRDGSVLMSVSLDQLKAPELLYRSLAAKLVVGMPFKDLATVDSILLRELPPVDDEEARLALKRLIDVSMGV 472 (733)
T ss_pred ccCCeeEEEeccccccccccHhhhccchhhhhccchhhccCcccccccCcceEeecccCCccchhhhhhhheeeeccccc
Confidence 78888888899999999999999999999999999999999999999999999999988877767778889999999999
Q ss_pred eccccccccCCCCcccceeehhhhhhcccccCCCCceEEEeecCCCCHHHHHhhhcCCceEEEeecCCCCCCCchhHHHH
Q 006566 481 ITPLSEQLTKPLPHAMVLVNLQELSTGAYKLLPEGTRLVVSLRGDESYEELEILKDIDATMILHDLPFNEDKIGRVQAAR 560 (640)
Q Consensus 481 l~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~lk~~~~~v~il~~~~~~~~~~~v~~~R 560 (640)
+.|.++....|.++++|+|+..++....+...++..+|+++.++++++|.+++++.++++++++..|...++.|+|+++|
T Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~e~l~~~~~~~~~~~il~s~~~~~~~~~v~~~R 552 (733)
T PLN02925 473 IAPLSEQLTKPLPNAMALVNLKELSSGAHKLLPEGTRLAVTLRGDEPYEELEILKDVDATMLLHDVPFTEDKVSRVHAAR 552 (733)
T ss_pred ccccchhcccccccceeeeehhhhcccccccccccceeEEeccCCccHHHHHHhhcCCceEEEEeccccccccchHHHHH
Confidence 77754544667888899999988764445555667799999999999999999999999999988333348899999999
Q ss_pred HHHHHHHHCCCCCCEEEEeccCCCCCccchHHHHHHhhhhhhhccccceeeecCCCCChhhhhhhhhhhhhhcccccc
Q 006566 561 RLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGALLVDGLGDGLLLEAPGQDFDFLRDTSFNLLQGVCLMSI 638 (640)
Q Consensus 561 ~l~~~L~~~g~~~PVi~~~~y~~~~~~~~~~l~aa~d~GaLL~DGlGDGi~l~~~~~~~~~~~~~aF~ILQaaR~r~~ 638 (640)
|||++|+++|+++||||+++|++..++++++|++|+++|+||+|||||||||..++.+......++|+||||+|+|++
T Consensus 553 rl~~~l~~~g~~~Pvi~~~~~~~~~~~~~~~i~s~~~~g~Ll~dGiGD~i~i~~~~~~~~~~~~~~~~ILQ~~~~R~~ 630 (733)
T PLN02925 553 RLFEYLSSNSLNFPVIHHIQFPAGIHRDDLVIQAGSQAGALLVDGLGDGVLLEAPDQDFDFLRNTSFGLLQGCRMRNT 630 (733)
T ss_pred HHHHHHHhcCCCCCEEEEEecCCCCchhHHHHHHHHHHHHHHhccCcceEEEeCCCCCHHHHHHHHHHHHHHhCcccc
Confidence 999999999999999999999987678999999999999999999999999998887888889999999999999985
No 2
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=100.00 E-value=3.2e-148 Score=1211.26 Aligned_cols=510 Identities=39% Similarity=0.609 Sum_probs=450.4
Q ss_pred ccccccCCCceeEEEceeecCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcC
Q 006566 79 SIHKTVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQK 158 (640)
Q Consensus 79 s~~~~~Rr~Tr~V~VG~v~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~ 158 (640)
|+|+|+||+||+|+||+|+|||+|||+|||||||+|+|+++||+||++|++|||||||+|||++++|+||++|+++|+++
T Consensus 2 ~~~~y~Rr~Tr~V~vG~v~iGg~~PI~vQSMt~t~T~D~~atv~Qi~~l~~aGceiVRvtv~~~~~a~~l~~I~~~l~~~ 81 (611)
T PRK02048 2 DLFNYSRRKTSVVNIGATPLGGPNPIRIQSMTNTSTMDTEACVAQAKRIIDAGGEYVRLTTQGVREAENLMNINIGLRSQ 81 (611)
T ss_pred CccccccccceEEEEcCEeECCCCceEEEecCCCCcccHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhhc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceeeccCCCHHHHHHHhhhcCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEee
Q 006566 159 NYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT 238 (640)
Q Consensus 159 g~~iPLVADIHF~~~~Al~Aa~~v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGv 238 (640)
||++||||||||||++|++|+++|||||||||||+|++|+|+.++||||||++||++|+++|.|||++||++|+||||||
T Consensus 82 G~~iPLVADIHF~~~~A~~a~~~v~kiRINPGN~~~~~k~f~~~~Ytdeey~~el~~i~e~~~~~v~~ak~~~~~iRIGv 161 (611)
T PRK02048 82 GYMVPLVADVHFNPKVADVAAQYAEKVRINPGNYVDPGRTFKKLEYTDEEYAQEIQKIRDRFVPFLNICKENHTAIRIGV 161 (611)
T ss_pred CCCCCEEEecCCCcHHHHHHHHhhCCEEECCCcCCCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcHhHHHHhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEEeCChhhHHHHHHHHHHHHHHcCCCcceEEEeecCCC
Q 006566 239 NHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGE 318 (640)
Q Consensus 239 NhGSLs~ril~ryGdtp~gMVeSAle~~~i~e~~~F~diviSmKsSn~~~mV~AyRlL~~~m~~~g~dyPLHLGVTEAG~ 318 (640)
||||||+|||+||||||+|||||||||++|||++||+||||||||||+.+||+|||+|+++|+++||+|||||||||||+
T Consensus 162 N~GSL~~~i~~~yg~tpe~mVeSAle~~~i~e~~~f~diviS~KsS~~~~~V~AyRlLa~~l~~~g~dyPLHLGvTEAG~ 241 (611)
T PRK02048 162 NHGSLSDRIMSRYGDTPEGMVESCMEFLRICVEEHFTDVVISIKASNTVVMVRTVRLLVAVMEAEGMHYPLHLGVTEAGD 241 (611)
T ss_pred CCcCchHHHHHHhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEEeCCcHHHHHHHHHHHHHHHhcCCCCceEEEEecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeehHHHHHHHhhhcCCcEEEeecCCCCchhhHHHHHHHh-hcccCcccccCchhhHHhhcccccccccccccccc
Q 006566 319 GEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRLAN-LGMRAAELQQGVAPFEEKHRHYFDFQRRSGQLPIQ 397 (640)
Q Consensus 319 gedGrIKSAiGIG~LL~DGIGDTIRVSLTedP~~Ei~va~~ILq-~~~R~CGRt~dl~~~~~~i~~l~~~~~~vmgciVN 397 (640)
+++|+||||+|||+||.||||||||||||++|++|+++||+||| ++.|......+ .....-++++.++||.+. .|.
T Consensus 242 ~edg~IKSAigiGaLL~DGIGDTIRVSlt~dP~~Ev~vAf~ILQa~r~R~~~~~~~--~~~~~~f~~~~~~rR~~~-~~~ 318 (611)
T PRK02048 242 GEDGRIKSAVGIGALLADGIGDTIRVSLSEEPEAEIPVARKLVDYIRSRENHPYIP--GMEAPGFDYLSPSRRKTR-AVR 318 (611)
T ss_pred CcCceehhHHHHHHHHhcCCccEEEEeCCCChHHHHHHHHHHHHHHHhhccCCCCC--cccCCCCCCCCccccccc-cee
Confidence 99999999999999999999999999999999999999999999 77775211111 111111367777887665 333
Q ss_pred cCCcccccccccccCCeEeeeccccccccchhhhhhhhhhhhhCCCCCCCCCcceEecC-CCCCCCchhHHHHhHHhhhc
Q 006566 398 KEGEEVDYRGVLHRDGSVLMSVSLDQLKAPELLYKSLAAKLVVGMPFKDLATVDSILLR-ELPSVDDHDARLALKRLVDI 476 (640)
Q Consensus 398 GpGE~AD~g~V~~~~GkVv~~v~~~~l~~~~~~y~~~~~k~~~~~~~~~~~~~D~i~~~-~~~~~~~~~~~~~lk~l~~~ 476 (640)
+.|+ ...+.| ..+.+.. +. ..++..++|+||++ ++|... +...++++|+
T Consensus 319 ~igg--------~~~~~V----~~~~~~~-~~-------------~~~~~~~~D~i~~~~~~~~~~----~~~~~~~~~~ 368 (611)
T PRK02048 319 NIGG--------DHLPVV----IADRMDG-DF-------------EFDPQFLPDYIYAGRELPEQR----EPGVQYILDA 368 (611)
T ss_pred ccCC--------cccceE----Eeecccc-cc-------------ccccCCCCceEeecccccccc----cccceEeecc
Confidence 3442 223333 2222221 11 12456899999999 555333 3456789999
Q ss_pred ccceeccccccccCCCCcccceeehhhhhhcccccCCCCceEEEeecCCCCHHHHHhhhcCCceEEEeecCCCCCCCchh
Q 006566 477 SMGVITPLSEQLTKPLPHAMVLVNLQELSTGAYKLLPEGTRLVVSLRGDESYEELEILKDIDATMILHDLPFNEDKIGRV 556 (640)
Q Consensus 477 ~~~~l~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~lk~~~~~v~il~~~~~~~~~~~v 556 (640)
++|- +.++.+|+|+..++... ...++..+|+++.+++++++.+++++.++++++++. +++.|++
T Consensus 369 ~~~~----------~~~~~~~~~~~~~~~~~--~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~----~~~~~~~ 432 (611)
T PRK02048 369 DVWK----------EEPNTWPAFNYAQLELM--ETCAAELKFLFLPYMALTDEVLACLKAHPEVVVILQ----SNHPNRV 432 (611)
T ss_pred cccc----------ccccceeeeehhhcccc--cccccccceEEeccCcccHHHHHHhhcCCceEEEEe----cCCcchH
Confidence 9882 14455668887766422 112234599999999999999999999999999988 8899999
Q ss_pred HHHHHHHHHHHHCCCCCCEEEEeccCCCCCccchHHHHHHhhhhhhhccccceeeecCCC-CChhhhhhhhhhhhhhccc
Q 006566 557 QAARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGALLVDGLGDGLLLEAPG-QDFDFLRDTSFNLLQGVCL 635 (640)
Q Consensus 557 ~~~R~l~~~L~~~g~~~PVi~~~~y~~~~~~~~~~l~aa~d~GaLL~DGlGDGi~l~~~~-~~~~~~~~~aF~ILQaaR~ 635 (640)
+++|+||++|+++|+++||||+++|++ .++++++|++|+|+|+||||||||||||++++ .+.+.+++|+||||||+|+
T Consensus 433 ~~~R~l~~~l~~~g~~~Pvi~~~~~~~-~~~~~~~i~aa~~~G~Ll~DGlgDgi~l~~~~~~~~~~~~~laf~ILQa~r~ 511 (611)
T PRK02048 433 GEHRALAHQLMVAGLENPVIFFQHYAE-TTAEDLQLKAAADMGALIFDGLCDGIFLFNQGKLSHVVVDATAFGILQAGRL 511 (611)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEecCC-CchHHHHHHHHHhhhHHHhCcccceEEEecCCCccHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999998 47889999999999999999999999999875 6788899999999999999
Q ss_pred ccc
Q 006566 636 MSI 638 (640)
Q Consensus 636 r~~ 638 (640)
|.+
T Consensus 512 R~s 514 (611)
T PRK02048 512 RTS 514 (611)
T ss_pred ccc
Confidence 986
No 3
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=100.00 E-value=3.3e-148 Score=1203.40 Aligned_cols=500 Identities=40% Similarity=0.641 Sum_probs=417.1
Q ss_pred cccccccccCCCceeEEEceeecCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHh
Q 006566 76 YCESIHKTVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSL 155 (640)
Q Consensus 76 Yc~s~~~~~Rr~Tr~V~VG~v~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L 155 (640)
-|+++++|+||+||+|+||+|+|||+|||+|||||||+|+|+++||+||++|++|||||||+|||++++|+||++||++|
T Consensus 3 ~c~~~~~y~Rr~Tr~V~VG~v~iGG~~PI~VQSMt~t~T~D~~atv~Qi~~L~~aGceiVRvtvp~~~~A~al~~I~~~L 82 (606)
T PRK00694 3 ATPCIQNAFRRKTHPVRIGNLFVGSEHSIKIQSMTTTATTDVDGTVRQICALQEWGCDIVRVTVQGLKEAQACEHIKERL 82 (606)
T ss_pred ccccccccccccceEEEEcCEeECCCCceEEEecCCCCcccHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHHHH
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCcceeeccCCCHHHHHHHhhhcCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEE
Q 006566 156 VQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVR 235 (640)
Q Consensus 156 ~~~g~~iPLVADIHF~~~~Al~Aa~~v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIR 235 (640)
+++|+++||||||||+|++|++|+++|||||||||||+|++|+|+.++||||||++||++|+++|.|||++|||+|+|||
T Consensus 83 ~~~g~~iPLVADIHF~~~~A~~a~~~vdkiRINPGNi~~~~k~F~~~~YtDeeY~~el~~I~e~~~~vV~~ake~~~~IR 162 (606)
T PRK00694 83 IQQGISIPLVADIHFFPQAAMHVADFVDKVRINPGNYVDKRNMFTGKIYTDEQYAHSLLRLEEKFSPLVEKCKRLGKAMR 162 (606)
T ss_pred hccCCCCCEEeecCCChHHHHHHHHhcCceEECCcccCCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCcHhHHHHhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEEeCChhhHHHHHHHHHHHHHHcCCCcceEEEeec
Q 006566 236 IGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTE 315 (640)
Q Consensus 236 IGvNhGSLs~ril~ryGdtp~gMVeSAle~~~i~e~~~F~diviSmKsSn~~~mV~AyRlL~~~m~~~g~dyPLHLGVTE 315 (640)
|||||||||+|||+||||||+|||||||||++|||++||+|||||||||||++||+|||+|+++|+++||+|||||||||
T Consensus 163 IGvN~GSL~~~i~~~yG~tpegmVeSAle~~~i~e~~~f~diviS~KsSnv~~mi~AyrlLa~~~d~eg~~YPLHLGVTE 242 (606)
T PRK00694 163 IGVNHGSLSERVMQRYGDTIEGMVYSALEYIEVCEKLDYRDVVFSMKSSNPKVMVAAYRQLAKDLDARGWLYPLHLGVTE 242 (606)
T ss_pred EecCCcCchHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCCcEEEEEEcCCHHHHHHHHHHHHHHhhccCCCcCceecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcceeehHHHHHHHhhhcCCcEEEeecCCCCchhhHHHHHHHh-hcccCcccccCchhhHHhhcccccccccccc-
Q 006566 316 AGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRLAN-LGMRAAELQQGVAPFEEKHRHYFDFQRRSGQ- 393 (640)
Q Consensus 316 AG~gedGrIKSAiGIG~LL~DGIGDTIRVSLTedP~~Ei~va~~ILq-~~~R~CGRt~dl~~~~~~i~~l~~~~~~vmg- 393 (640)
||++++|+||||+|||+||.||||||||||||+||++||+||++||+ +..+. ++.... +++.+.+|...
T Consensus 243 AG~g~~G~IKSavGIG~LL~dGIGDTIRVSLT~dP~~Ev~va~~ll~~~~~~~-~~~~~~--------~pf~~~rR~~~~ 313 (606)
T PRK00694 243 AGSGTDGIIKSAVGIGTLLSEGLGDTIRCSLTGCPTNEIPVCISLLKHTTEYL-ELPEKD--------NPFALHHSEQFV 313 (606)
T ss_pred CcCCCCceeHHHHHHHHHHHhCCCCeEEEECCCChHHHHHHHHHHHHHHHHhh-ccCCCC--------CCCCcccccccc
Confidence 99999999999999999999999999999999999999999999999 44443 332111 22222322221
Q ss_pred -cccccCCcccccccccccCCeEeeeccccccc-cchhhhhhhhhhhhhCCCCCCCCCcceEecCCCCCCCchhHHHHhH
Q 006566 394 -LPIQKEGEEVDYRGVLHRDGSVLMSVSLDQLK-APELLYKSLAAKLVVGMPFKDLATVDSILLRELPSVDDHDARLALK 471 (640)
Q Consensus 394 -ciVNGpGE~AD~g~V~~~~GkVv~~v~~~~l~-~~~~~y~~~~~k~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~lk 471 (640)
-+.|--. ...+.++. |.+...++..++. +++.+|+.+..+...|. +|..++|.+.+...|..
T Consensus 314 ~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~d~~~~~~~~~~~~~~~---------- 377 (606)
T PRK00694 314 SATRKTLK-TTPWGNVY---GVFIKLTDVHLLTAEPEELLECLGIDPTTGK--KDFTTPEGVVVPKAMRS---------- 377 (606)
T ss_pred ccceeecc-cCcccccc---chhhccccchhcccchhhhhhhcccccccCC--cccCCccceEEeccccc----------
Confidence 1111000 11122222 4444445554443 66777777766655544 56777777765442222
Q ss_pred HhhhcccceeccccccccCCCCcccceeehhhhhhcccccCCCCceEEEeecCCCCHHHHHhhhcCCceEEEeecCCCCC
Q 006566 472 RLVDISMGVITPLSEQLTKPLPHAMVLVNLQELSTGAYKLLPEGTRLVVSLRGDESYEELEILKDIDATMILHDLPFNED 551 (640)
Q Consensus 472 ~l~~~~~~~l~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~lk~~~~~v~il~~~~~~~ 551 (640)
+.+| .+.++.+|+|+..++. + + .+.+++....++...+ ++++. +.
T Consensus 378 ----~~~~----------~~~~~~~~~~~~~~~~------------~--~--~~~~~~~~~~~~~l~~-~~v~~----~~ 422 (606)
T PRK00694 378 ----SPIV----------SELEKHLLVFHHHDVP------------C--L--YEMNEEIWLSEEVLSA-PFVHF----HA 422 (606)
T ss_pred ----hhhc----------cccccceeeechhhcc------------c--c--ccccHhhhhhhhhhcc-eeEec----cc
Confidence 2222 1112345577655431 0 0 1222222222222233 44544 77
Q ss_pred CCchhHHHHHHHHHHHHCCCCCCEEEEeccCCCCCccchHHHHHHhhhhhhhccccceeeecCCCCChhhhhhhhhhhhh
Q 006566 552 KIGRVQAARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGALLVDGLGDGLLLEAPGQDFDFLRDTSFNLLQ 631 (640)
Q Consensus 552 ~~~~v~~~R~l~~~L~~~g~~~PVi~~~~y~~~~~~~~~~l~aa~d~GaLL~DGlGDGi~l~~~~~~~~~~~~~aF~ILQ 631 (640)
+.|+++++|+||++|+++ ++||||+++|++. ++++++|++|+++|+||||||||||||++++.+.+.+++|+|||||
T Consensus 423 ~~~~v~~~R~l~~~l~~~--~~Pvi~~~~~~~~-~~~~~~i~aa~~~G~Ll~DGlGDgi~l~~~~~~~~~~~~laf~ILQ 499 (606)
T PRK00694 423 TDPFIHTARRFFSKRQHS--TQPVKLVFSLDPD-SKNEAAIDIATEFGALLLDGLGECVLLDLPNIKLSDVRTIAFGTLQ 499 (606)
T ss_pred CcchHHHHHHHHHHHHhc--CCCEEEEEecCCC-chhHHHHHHHHHhhHHHhccCcceEEEeCCCCCHHHHHHHHHHHHH
Confidence 789999999999999888 7899999999986 7889999999999999999999999999987888999999999999
Q ss_pred hcccccc
Q 006566 632 GVCLMSI 638 (640)
Q Consensus 632 aaR~r~~ 638 (640)
|+|+|.+
T Consensus 500 aaR~R~s 506 (606)
T PRK00694 500 SAGVRLV 506 (606)
T ss_pred Hhccccc
Confidence 9999986
No 4
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=100.00 E-value=2.5e-120 Score=939.15 Aligned_cols=310 Identities=42% Similarity=0.620 Sum_probs=293.8
Q ss_pred CCCceeEEEceeecCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCCCcce
Q 006566 85 RRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPL 164 (640)
Q Consensus 85 Rr~Tr~V~VG~v~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~iPL 164 (640)
||+||+|+||+|+|||+|||+|||||||+|+|+++||+||++|++|||||||+|||++++|++|++|++ ++++||
T Consensus 1 Rr~tr~V~VG~v~IGG~~PI~VQSMtnt~T~Dv~atv~QI~~L~~aGceiVRvavp~~~~A~al~~I~~-----~~~iPl 75 (346)
T TIGR00612 1 RRKTRSVRVGAVPVGGDAPIVVQSMTNTDTIDIDSTVAQIRALEEAGCDIVRVTVPDRESAAAFEAIKE-----GTNVPL 75 (346)
T ss_pred CCcceEEEEcCEeECCCCcEEEEecCCCCchhHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHh-----CCCCCE
Confidence 899999999999999999999999999999999999999999999999999999999999999999999 699999
Q ss_pred eeccCCCHHHHHHHhhh-cCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCC
Q 006566 165 VADIHFAPSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSL 243 (640)
Q Consensus 165 VADIHF~~~~Al~Aa~~-v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSL 243 (640)
||||||||++|+.|++. ++||||||||||+++ +|+++|++||++|+|||||||||||
T Consensus 76 VADIHFd~~lAl~a~~~g~dkiRINPGNig~~e----------------------~v~~vv~~ak~~~ipIRIGVN~GSL 133 (346)
T TIGR00612 76 VADIHFDYRLAALAMAKGVAKVRINPGNIGFRE----------------------RVRDVVEKARDHGKAMRIGVNHGSL 133 (346)
T ss_pred EEeeCCCcHHHHHHHHhccCeEEECCCCCCCHH----------------------HHHHHHHHHHHCCCCEEEecCCCCC
Confidence 99999999999999999 999999999999954 4999999999999999999999999
Q ss_pred cHhHHHHhC-CChHHHHHHHHHHHHHHHHCCCCcEEEEEEeCChhhHHHHHHHHHHHHHHcCCCcceEEEeecCCCCCcc
Q 006566 244 SDRIMSYYG-DSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDG 322 (640)
Q Consensus 244 s~ril~ryG-dtp~gMVeSAle~~~i~e~~~F~diviSmKsSn~~~mV~AyRlL~~~m~~~g~dyPLHLGVTEAG~gedG 322 (640)
+++++++|| +||++||||||||+++||++||+||||||||||+++|++|||+|+++ +||||||||||||++.+|
T Consensus 134 ~~~~~~kyg~~t~eamveSAl~~v~~le~~~F~diviS~KsSdv~~~i~ayr~la~~-----~dyPLHlGVTEAG~~~~G 208 (346)
T TIGR00612 134 ERRLLEKYGDATAEAMVQSALEEAAILEKLGFRNVVLSMKASDVAETVAAYRLLAER-----SDYPLHLGVTEAGMGVKG 208 (346)
T ss_pred cHHHHHHcCCCCHHHHHHHHHHHHHHHHHCCCCcEEEEEEcCCHHHHHHHHHHHHhh-----CCCCceeccccCCCCCCc
Confidence 999999999 69999999999999999999999999999999999999999999999 899999999999999999
Q ss_pred eeehHHHHHHHhhhcCCcEEEeecCCCCchhhHHHHHHHh-hccc----------Ccccc-cCchhhHHhh----ccc-c
Q 006566 323 RMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRLAN-LGMR----------AAELQ-QGVAPFEEKH----RHY-F 385 (640)
Q Consensus 323 rIKSAiGIG~LL~DGIGDTIRVSLTedP~~Ei~va~~ILq-~~~R----------~CGRt-~dl~~~~~~i----~~l-~ 385 (640)
+||||+|||+||.||||||||||||+||++||++||+||+ +++| +|||+ +|+.++.+++ .++ .
T Consensus 209 ~IKSaigig~LL~~GIGDTIRVSLT~dP~~EV~va~~IL~slglr~~g~~iiSCPtCGR~~~dl~~~~~~ve~~l~~~~~ 288 (346)
T TIGR00612 209 IVKSSAGIGILLARGIGDTIRVSLTDDPTHEVPVAFEILQSLGLRARGVEIVACPSCGRTGFDVEKVVRRVQEALFHLKT 288 (346)
T ss_pred hhHHHHHHHHHHhhCCCCeEEEECCCCcHHHHHHHHHHHHHcCCCcCCCeEEECCCCCCcCCCHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999999999999 8888 39996 8977665554 444 3
Q ss_pred cccccccccccccCCc--ccccc--------cccccCCeEeeecccccccc
Q 006566 386 DFQRRSGQLPIQKEGE--EVDYR--------GVLHRDGSVLMSVSLDQLKA 426 (640)
Q Consensus 386 ~~~~~vmgciVNGpGE--~AD~g--------~V~~~~GkVv~~v~~~~l~~ 426 (640)
.++.++|||+|||||| +||+| +++|++|+++++++++++.+
T Consensus 289 ~l~VAVMGCvVNGPGEak~ADiGIaggg~g~~~lF~~G~~~~kv~~~~~~~ 339 (346)
T TIGR00612 289 PLKVAVMGCVVNGPGEAKHADIGISGGGTGSAILFKRGKPKAKQPETDMAD 339 (346)
T ss_pred CCEEEEECceecCCchhhccCeeeecCCCCceEEEECCEEeEecCHHHHHH
Confidence 4667999999999999 49995 57789999999999988765
No 5
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=100.00 E-value=3.5e-121 Score=952.24 Aligned_cols=321 Identities=44% Similarity=0.673 Sum_probs=275.6
Q ss_pred ceeEEEceeecCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCCCcceeec
Q 006566 88 TRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVAD 167 (640)
Q Consensus 88 Tr~V~VG~v~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~iPLVAD 167 (640)
||+|+||+|+|||+|||+|||||||+|.|+++||+||++|++|||||||+|||++++|++|++|+++|+++|+++|||||
T Consensus 1 Tr~V~VG~v~IGG~~PI~VQSMt~t~t~Dv~atv~QI~~L~~aGceivRvavp~~~~a~al~~I~~~l~~~g~~iPlVAD 80 (359)
T PF04551_consen 1 TRQVRVGNVPIGGGAPISVQSMTNTDTRDVEATVAQIKRLEEAGCEIVRVAVPDMEAAEALKEIKKRLRALGSPIPLVAD 80 (359)
T ss_dssp ---EEETTEEESTTS--EEEEE--S-TT-HHHHHHHHHHHHHCT-SEEEEEE-SHHHHHHHHHHHHHHHCTT-SS-EEEE
T ss_pred CcEEEEcCEeecCCCCEEEEecCCCCcccHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHhhccCCCCCCeeee
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHhhhcCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhH
Q 006566 168 IHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRI 247 (640)
Q Consensus 168 IHF~~~~Al~Aa~~v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ri 247 (640)
|||||++|++|+++++|||||||||+| +|++++..++++|+++|++|||+|+|||||||||||++++
T Consensus 81 IHFd~~lAl~a~~~v~kiRINPGNi~~-------------~~~~~~g~~~~~~~~vv~~ake~~ipIRIGvN~GSL~~~~ 147 (359)
T PF04551_consen 81 IHFDYRLALEAIEAVDKIRINPGNIVD-------------EFQEELGSIREKVKEVVEAAKERGIPIRIGVNSGSLEKDI 147 (359)
T ss_dssp ESTTCHHHHHHHHC-SEEEE-TTTSS-----------------SS-SS-HHHHHHHHHHHHHHT-EEEEEEEGGGS-HHH
T ss_pred cCCCHHHHHHHHHHhCeEEECCCcccc-------------cccccccchHHHHHHHHHHHHHCCCCEEEecccccCcHHH
Confidence 999999999999999999999999996 7899999999999999999999999999999999999999
Q ss_pred HHHhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEEeCChhhHHHHHHHHHHHHHHcCCCcceEEEeecCCCCCcceeehH
Q 006566 248 MSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSA 327 (640)
Q Consensus 248 l~ryGdtp~gMVeSAle~~~i~e~~~F~diviSmKsSn~~~mV~AyRlL~~~m~~~g~dyPLHLGVTEAG~gedGrIKSA 327 (640)
++|||+||++|||||+||+++||++||+||+||+||||+..|++|||+|+++ ++|||||||||||++++|+||||
T Consensus 148 ~~ky~~t~~amvesA~~~~~~le~~~f~~iviSlKsSdv~~~i~ayr~la~~-----~dyPLHLGvTEAG~~~~g~IkSs 222 (359)
T PF04551_consen 148 LEKYGPTPEAMVESALEHVRILEELGFDDIVISLKSSDVPETIEAYRLLAER-----MDYPLHLGVTEAGTGEDGTIKSS 222 (359)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHCT-GGEEEEEEBSSHHHHHHHHHHHHHH-------S-EEEEBSSEESCHHHHHHHH
T ss_pred HhhccchHHHHHHHHHHHHHHHHHCCCCcEEEEEEeCChHHHHHHHHHHHHh-----cCCCeEEeecCCCCcccchhHHH
Confidence 9999999999999999999999999999999999999999999999999999 88999999999999999999999
Q ss_pred HHHHHHhhhcCCcEEEeecCCCCchhhHHHHHHHh-hccc----------Ccccc-cCchhhHHhhc----ccc-ccccc
Q 006566 328 IGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRLAN-LGMR----------AAELQ-QGVAPFEEKHR----HYF-DFQRR 390 (640)
Q Consensus 328 iGIG~LL~DGIGDTIRVSLTedP~~Ei~va~~ILq-~~~R----------~CGRt-~dl~~~~~~i~----~l~-~~~~~ 390 (640)
+|||+||.||||||||||||++|++||++||+||| +++| +|||| ||++++.++++ +++ +++++
T Consensus 223 igiG~LL~~GIGDTIRVSLt~~p~~EV~va~~IL~al~lR~~g~~~ISCPtCGRt~~Dl~~~~~~ie~~l~~l~~~lkIA 302 (359)
T PF04551_consen 223 IGIGALLLDGIGDTIRVSLTGDPVEEVKVAFEILQALGLRKRGPEIISCPTCGRTEFDLQELVAEIEERLKHLKKGLKIA 302 (359)
T ss_dssp HHHHHHHHTT--SEEEE-ECSSCCCHHHHHHHHHHHTTSS-SS-EEEE----TT--SHHHHHHHHHHHHCCCHHCG-EEE
T ss_pred HHHHHHHHcCCCCEEEEECCCCchHHHHHHHHHHHHhCcCcCCceeeeCCCCCCccchHHHHHHHHHHHHhcCCCCceEE
Confidence 99999999999999999999999999999999999 8888 39997 99887777664 444 77789
Q ss_pred ccccccccCCc--ccccccc--------cccCCeEeeec-ccccccc
Q 006566 391 SGQLPIQKEGE--EVDYRGV--------LHRDGSVLMSV-SLDQLKA 426 (640)
Q Consensus 391 vmgciVNGpGE--~AD~g~V--------~~~~GkVv~~v-~~~~l~~ 426 (640)
+|||+|||||| +||||++ +|++|++++++ +++++.+
T Consensus 303 VMGCiVNGPGEa~~AD~GiaGgg~g~~~lf~~g~~v~k~~~ee~~vd 349 (359)
T PF04551_consen 303 VMGCIVNGPGEAKDADIGIAGGGKGKGILFKKGEVVKKVIPEEEIVD 349 (359)
T ss_dssp EESSTCCCHHHCTTSSEEEE-E-TTCEEEECTTEEEEEE-CSTCHHH
T ss_pred EEeeeecCCchhhhCceeeecCCCCeEEEEECCEEEEecCCHHHHHH
Confidence 99999999999 5999765 57888899998 8877765
No 6
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=100.00 E-value=4.1e-117 Score=921.04 Aligned_cols=316 Identities=42% Similarity=0.647 Sum_probs=295.9
Q ss_pred cccccCCCceeEEEceeecCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCC
Q 006566 80 IHKTVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKN 159 (640)
Q Consensus 80 ~~~~~Rr~Tr~V~VG~v~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g 159 (640)
...++||+||+|+||+|+|||+|||+|||||||+|+|+++|++||++|++|||||||+|||++++|++|++|+++
T Consensus 4 ~~~~~Rr~tr~V~VG~v~iGg~~Pi~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvav~~~~~a~al~~I~~~----- 78 (360)
T PRK00366 4 STPIPRRKTRQVKVGNVPIGGDAPIVVQSMTNTDTADVEATVAQIKRLARAGCEIVRVAVPDMEAAAALPEIKKQ----- 78 (360)
T ss_pred ccccccccceEEEEcCEeECCCCcEEEEecCCCCchhHHHHHHHHHHHHHcCCCEEEEccCCHHHHHhHHHHHHc-----
Confidence 346789999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred CCcceeeccCCCHHHHHHHhhh-cCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEee
Q 006566 160 YNIPLVADIHFAPSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT 238 (640)
Q Consensus 160 ~~iPLVADIHF~~~~Al~Aa~~-v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGv 238 (640)
+++||||||||||++|++|+++ ++|||||||||++.+ ++|+++|++||++|+||||||
T Consensus 79 ~~iPlvADIHFd~~lAl~a~~~G~~~iRINPGNig~~~---------------------~~v~~vv~~ak~~~ipIRIGv 137 (360)
T PRK00366 79 LPVPLVADIHFDYRLALAAAEAGADALRINPGNIGKRD---------------------ERVREVVEAAKDYGIPIRIGV 137 (360)
T ss_pred CCCCEEEecCCCHHHHHHHHHhCCCEEEECCCCCCchH---------------------HHHHHHHHHHHHCCCCEEEec
Confidence 7999999999999999999999 999999999998722 359999999999999999999
Q ss_pred CCCCCcHhHHHHhCC-ChHHHHHHHHHHHHHHHHCCCCcEEEEEEeCChhhHHHHHHHHHHHHHHcCCCcceEEEeecCC
Q 006566 239 NHGSLSDRIMSYYGD-SPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAG 317 (640)
Q Consensus 239 NhGSLs~ril~ryGd-tp~gMVeSAle~~~i~e~~~F~diviSmKsSn~~~mV~AyRlL~~~m~~~g~dyPLHLGVTEAG 317 (640)
|||||+++++++||+ ||++||||||+|+++||++||+|||||||||||++|++|||+|+++ +||||||||||||
T Consensus 138 N~GSL~~~~~~~yg~~t~eamveSAl~~~~~le~~~f~~iviS~KsS~v~~~i~ayrlla~~-----~dyPLHlGvTEAG 212 (360)
T PRK00366 138 NAGSLEKDLLEKYGEPTPEALVESALRHAKILEELGFDDIKISVKASDVQDLIAAYRLLAKR-----CDYPLHLGVTEAG 212 (360)
T ss_pred CCccChHHHHHHcCCCCHHHHHHHHHHHHHHHHHCCCCcEEEEEEcCCHHHHHHHHHHHHhc-----CCCCceecccCCC
Confidence 999999999999996 9999999999999999999999999999999999999999999999 8999999999999
Q ss_pred CCCcceeehHHHHHHHhhhcCCcEEEeecCCCCchhhHHHHHHHh-hccc----------Ccccc-cCchhhHHh----h
Q 006566 318 EGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRLAN-LGMR----------AAELQ-QGVAPFEEK----H 381 (640)
Q Consensus 318 ~gedGrIKSAiGIG~LL~DGIGDTIRVSLTedP~~Ei~va~~ILq-~~~R----------~CGRt-~dl~~~~~~----i 381 (640)
++.+|+||||+|||+||.||||||||||||+||++||+||++||+ +++| .|||+ +|+..+.++ +
T Consensus 213 ~~~~G~iKSa~gig~LL~~GIGDTiRVSLt~~P~~EV~va~~IL~slglr~~g~~IisCPgCgR~~~D~~~la~~vee~~ 292 (360)
T PRK00366 213 MGFKGTVKSAAGLGALLQEGIGDTIRVSLTADPVEEVKVGQEILQSLGLRSRGPEVISCPTCGRTEFDVIQELAEVEQRL 292 (360)
T ss_pred CCCCceehhHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHHHHHcCCccCCCeEEECCCCCCCcccHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999 8888 39995 886655444 3
Q ss_pred ccc-ccccccccccccccCCc--ccccc-------cccccCCeEeeecccccccc
Q 006566 382 RHY-FDFQRRSGQLPIQKEGE--EVDYR-------GVLHRDGSVLMSVSLDQLKA 426 (640)
Q Consensus 382 ~~l-~~~~~~vmgciVNGpGE--~AD~g-------~V~~~~GkVv~~v~~~~l~~ 426 (640)
++. ..++.++|||+|||||| .||+| +++|.+|+++++++++++.+
T Consensus 293 ~~~~~PlkIAVmGC~VNgpGEa~~aDIGIaG~~~~~~vf~~Gk~v~kv~~~~~~~ 347 (360)
T PRK00366 293 EHIKMPLKVAVMGCVVNGPGEAKEADIGIAGGNPKGPVFVDGEKIKTLPEENIVE 347 (360)
T ss_pred cCCCCCcEEEEeCCCCCCCCchhhCcEeEecCCCceEEEECCEEeeeeChHhHHH
Confidence 333 33678999999999999 49995 77899999999999988876
No 7
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=100.00 E-value=2.4e-115 Score=898.73 Aligned_cols=312 Identities=42% Similarity=0.662 Sum_probs=292.8
Q ss_pred ccCCCceeEEEceeecCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCCCc
Q 006566 83 TVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNI 162 (640)
Q Consensus 83 ~~Rr~Tr~V~VG~v~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~i 162 (640)
.+||+||+|+||+|+|||++||.|||||||+|.|+++||+||++|+++||||||+|||++++|+++++||++ .++
T Consensus 1 ~~Rrktr~v~VG~V~vGgdaPI~VQSMTnT~T~Dv~aTv~QI~~L~~aG~dIVRvtv~~~e~A~A~~~Ik~~-----~~v 75 (361)
T COG0821 1 IPRRKTRQVKVGNVPVGGDAPIVVQSMTNTDTADVEATVAQIKALERAGCDIVRVTVPDMEAAEALKEIKQR-----LNV 75 (361)
T ss_pred CCcccceeEEECCEeecCCCceEEEeccCCCcccHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHh-----CCC
Confidence 369999999999999999999999999999999999999999999999999999999999999999999997 699
Q ss_pred ceeeccCCCHHHHHHHhhh-cCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCC
Q 006566 163 PLVADIHFAPSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHG 241 (640)
Q Consensus 163 PLVADIHF~~~~Al~Aa~~-v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhG 241 (640)
||||||||+|++|+.++++ ++|+||||||||+++ +|+++|+.||++|+|||||||||
T Consensus 76 PLVaDiHf~~rla~~~~~~g~~k~RINPGNig~~~----------------------~v~~vVe~Ak~~g~piRIGVN~G 133 (361)
T COG0821 76 PLVADIHFDYRLALEAAECGVDKVRINPGNIGFKD----------------------RVREVVEAAKDKGIPIRIGVNAG 133 (361)
T ss_pred CEEEEeeccHHHHHHhhhcCcceEEECCcccCcHH----------------------HHHHHHHHHHHcCCCEEEecccC
Confidence 9999999999999999999 999999999999855 49999999999999999999999
Q ss_pred CCcHhHHHHhC-CChHHHHHHHHHHHHHHHHCCCCcEEEEEEeCChhhHHHHHHHHHHHHHHcCCCcceEEEeecCCCCC
Q 006566 242 SLSDRIMSYYG-DSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGE 320 (640)
Q Consensus 242 SLs~ril~ryG-dtp~gMVeSAle~~~i~e~~~F~diviSmKsSn~~~mV~AyRlL~~~m~~~g~dyPLHLGVTEAG~ge 320 (640)
||+++++.||| +||++||||||+++++||++||+||+||||+|||+.||+|||+|+++ +||||||||||||++.
T Consensus 134 SLek~~~~ky~~pt~ealveSAl~~a~~~e~l~f~~i~iS~K~Sdv~~~v~aYr~lA~~-----~dyPLHLGvTEAG~~~ 208 (361)
T COG0821 134 SLEKRLLEKYGGPTPEALVESALEHAELLEELGFDDIKVSVKASDVQLMVAAYRLLAKR-----CDYPLHLGVTEAGMGF 208 (361)
T ss_pred chhHHHHHHhcCCCHHHHHHHHHHHHHHHHHCCCCcEEEEEEcCCHHHHHHHHHHHHHh-----cCCCcccceecccCcc
Confidence 99999999996 89999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred cceeehHHHHHHHhhhcCCcEEEeecCCCCchhhHHHHHHHh-hccc----------Ccccc-cCchhh----HHhhccc
Q 006566 321 DGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRLAN-LGMR----------AAELQ-QGVAPF----EEKHRHY 384 (640)
Q Consensus 321 dGrIKSAiGIG~LL~DGIGDTIRVSLTedP~~Ei~va~~ILq-~~~R----------~CGRt-~dl~~~----~~~i~~l 384 (640)
.|+||||+|||.||.+|||||||||||++|++||+||++||| +++| +|||+ ||+..+ ++++.++
T Consensus 209 ~G~VkSa~alg~LL~eGIGDTIRVSLt~~P~~EV~V~~eILqslglR~~~v~~iaCP~CGR~~~dv~~~~~~~~~~~~~~ 288 (361)
T COG0821 209 KGIVKSAAALGALLSEGIGDTIRVSLTADPVEEVKVAQEILQSLGLRSRGVEVIACPTCGRTEFDVIQTLNEVEQRLEHL 288 (361)
T ss_pred cceehHHHHHHHHHHhcCCceEEEecCCCchhhhHHHHHHHHHhCccccCceEEECCCCCceeehHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999999999 8888 39996 886544 4444455
Q ss_pred cc-ccccccccccccCCc--ccccc--------cccccCCeEeeecccccccc
Q 006566 385 FD-FQRRSGQLPIQKEGE--EVDYR--------GVLHRDGSVLMSVSLDQLKA 426 (640)
Q Consensus 385 ~~-~~~~vmgciVNGpGE--~AD~g--------~V~~~~GkVv~~v~~~~l~~ 426 (640)
+. ++.++|||+|||||| +||+| +..|.+|+++.+++.+++.+
T Consensus 289 ~~pl~VAVMGCVVNGPGEak~AdiGia~~~~~~~~~f~~g~~~~~~~~~~~~e 341 (361)
T COG0821 289 KTPLKVAVMGCVVNGPGEAKHADIGIAGGGKGSGPVFVKGEIIKKLPEEDIVE 341 (361)
T ss_pred CCCceEEEEEeEecCCcchhccceeeecCCCCeeEEEECCeEEEecChhhHHH
Confidence 43 667999999999999 59996 45578899999988887765
No 8
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=99.93 E-value=2.9e-26 Score=255.68 Aligned_cols=141 Identities=18% Similarity=0.197 Sum_probs=122.4
Q ss_pred CcEEEEEEe---CChhhHHHHHHHHHHHHHHcCCCcceEEEee--cCCCCCcceeehHHHHHHHhhhcCCcEEEeecCC-
Q 006566 275 HNFLFSMKA---SNPVVMVQAYRLLVAEMYVHGWDYPLHLGVT--EAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTE- 348 (640)
Q Consensus 275 ~diviSmKs---Sn~~~mV~AyRlL~~~m~~~g~dyPLHLGVT--EAG~gedGrIKSAiGIG~LL~DGIGDTIRVSLTe- 348 (640)
..+++-+++ -+....+.++|+|++.|+++|++||+-+-.+ +..+.++-.|+|++++|+||.||||||||++...
T Consensus 530 ~~~~~il~s~~~~~~~~~v~~~Rrl~~~l~~~g~~~Pvi~~~~~~~~~~~~~~~i~s~~~~g~Ll~dGiGD~i~i~~~~~ 609 (733)
T PLN02925 530 DATMLLHDVPFTEDKVSRVHAARRLFEYLSSNSLNFPVIHHIQFPAGIHRDDLVIQAGSQAGALLVDGLGDGVLLEAPDQ 609 (733)
T ss_pred CceEEEEeccccccccchHHHHHHHHHHHHhcCCCCCEEEEEecCCCCchhHHHHHHHHHHHHHHhccCcceEEEeCCCC
Confidence 556777776 2337789999999999999999999966654 4337889999999999999999999999999884
Q ss_pred CCchhhHHHHHHHh-hccc----------Ccccc-cCchhhHHhhc----ccccccccccccccccCCc--ccccccccc
Q 006566 349 PPEKEIDPCRRLAN-LGMR----------AAELQ-QGVAPFEEKHR----HYFDFQRRSGQLPIQKEGE--EVDYRGVLH 410 (640)
Q Consensus 349 dP~~Ei~va~~ILq-~~~R----------~CGRt-~dl~~~~~~i~----~l~~~~~~vmgciVNGpGE--~AD~g~V~~ 410 (640)
+..+|+.+|++||| +++| +|||| ||+|+++++++ |++++++++|||||||||| +|||||||.
T Consensus 610 ~~~~~~~~~~~ILQ~~~~R~~kte~isCPgCGRT~~dlq~~~~~I~~~~~hl~GvkiavMGCIVNGPGEmadAd~GyVG~ 689 (733)
T PLN02925 610 DFDFLRNTSFGLLQGCRMRNTKTEYVSCPSCGRTLFDLQEVSAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGG 689 (733)
T ss_pred CHHHHHHHHHHHHHHhCccccCCeEEECCCCCCccccHHHHHHHHHHHhhcCCCceEEEEeeeecCCccccccccceecc
Confidence 45577899999999 9998 39997 99998877764 5889999999999999999 599999999
Q ss_pred cCCeE
Q 006566 411 RDGSV 415 (640)
Q Consensus 411 ~~GkV 415 (640)
++|||
T Consensus 690 gpgKI 694 (733)
T PLN02925 690 APGKI 694 (733)
T ss_pred CCCee
Confidence 99999
No 9
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=99.93 E-value=3e-26 Score=252.95 Aligned_cols=140 Identities=18% Similarity=0.173 Sum_probs=122.2
Q ss_pred CcEEEEEEeCChhhHHHHHHHHHHHHHHcCCCcceEEEeec-CCCCCcceeehHHHHHHHhhhcCCcEEEeecCC--CCc
Q 006566 275 HNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTE-AGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTE--PPE 351 (640)
Q Consensus 275 ~diviSmKsSn~~~mV~AyRlL~~~m~~~g~dyPLHLGVTE-AG~gedGrIKSAiGIG~LL~DGIGDTIRVSLTe--dP~ 351 (640)
..+++-+++++ ...+.++|.|++.|++.|+++|+-+-.+- ..+.++-.|+||+.+|+||.|||||+|+++... ++.
T Consensus 418 ~~~~~i~~~~~-~~~~~~~R~l~~~l~~~g~~~Pvi~~~~~~~~~~~~~~i~aa~~~G~Ll~DGlgDgi~l~~~~~~~~~ 496 (611)
T PRK02048 418 PEVVVILQSNH-PNRVGEHRALAHQLMVAGLENPVIFFQHYAETTAEDLQLKAAADMGALIFDGLCDGIFLFNQGKLSHV 496 (611)
T ss_pred CceEEEEecCC-cchHHHHHHHHHHHHhcCCCCCEEEEEecCCCchHHHHHHHHHhhhHHHhCcccceEEEecCCCccHH
Confidence 45667777555 78899999999999999999999666542 267888999999999999999999999998773 356
Q ss_pred hhhHHHHHHHh-hccc----------Ccccc-cCchhhHHhhc----ccccccccccccccccCCc--ccccccccccCC
Q 006566 352 KEIDPCRRLAN-LGMR----------AAELQ-QGVAPFEEKHR----HYFDFQRRSGQLPIQKEGE--EVDYRGVLHRDG 413 (640)
Q Consensus 352 ~Ei~va~~ILq-~~~R----------~CGRt-~dl~~~~~~i~----~l~~~~~~vmgciVNGpGE--~AD~g~V~~~~G 413 (640)
.+...+++||| .++| +|||| ||+|+++++++ |++++|+++|||||||||| ||||||||.++|
T Consensus 497 ~~~~laf~ILQa~r~R~sKTEyISCPsCGRTLfDLq~tta~Ik~~t~HLkGlkI~IMGCIVNGPGEMADADfGYVG~gpg 576 (611)
T PRK02048 497 VVDATAFGILQAGRLRTSKTEYISCPGCGRTLYDLQSTIARIKEATSHLKGLKIGIMGCIVNGPGEMADADYGYVGAGRG 576 (611)
T ss_pred HHHHHHHHHHHHhccccccceEEECCCCCcchhhHHHHHHHHHHHhCCCCCceEEEEEeEecCCchhhhcccceecCCCC
Confidence 67789999999 8888 39999 99998877764 6899999999999999999 699999999999
Q ss_pred eE
Q 006566 414 SV 415 (640)
Q Consensus 414 kV 415 (640)
||
T Consensus 577 kI 578 (611)
T PRK02048 577 KI 578 (611)
T ss_pred eE
Confidence 99
No 10
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=99.90 E-value=2.8e-24 Score=236.03 Aligned_cols=130 Identities=15% Similarity=0.202 Sum_probs=114.1
Q ss_pred CChhhHHHHHHHHHHHHHHcCCCcceEEEeecC-CCCCcceeehHHHHHHHhhhcCCcEEEeecCC-CCchhhHHHHHHH
Q 006566 284 SNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEA-GEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTE-PPEKEIDPCRRLA 361 (640)
Q Consensus 284 Sn~~~mV~AyRlL~~~m~~~g~dyPLHLGVTEA-G~gedGrIKSAiGIG~LL~DGIGDTIRVSLTe-dP~~Ei~va~~IL 361 (640)
|+-...+.++|+|+++|++. ++|+.+-.+.. ++.++..|+||+.+|+||.|||||+|+++... ++..+..++++||
T Consensus 421 ~~~~~~v~~~R~l~~~l~~~--~~Pvi~~~~~~~~~~~~~~i~aa~~~G~Ll~DGlGDgi~l~~~~~~~~~~~~laf~IL 498 (606)
T PRK00694 421 HATDPFIHTARRFFSKRQHS--TQPVKLVFSLDPDSKNEAAIDIATEFGALLLDGLGECVLLDLPNIKLSDVRTIAFGTL 498 (606)
T ss_pred ccCcchHHHHHHHHHHHHhc--CCCEEEEEecCCCchhHHHHHHHHHhhHHHhccCcceEEEeCCCCCHHHHHHHHHHHH
Confidence 33367899999999999888 78998888755 57888999999999999999999999999884 4556679999999
Q ss_pred h-hccc----------Ccccc-cCchhhHHhh----cccccccccccccccccCCc--ccccccccccCCeE
Q 006566 362 N-LGMR----------AAELQ-QGVAPFEEKH----RHYFDFQRRSGQLPIQKEGE--EVDYRGVLHRDGSV 415 (640)
Q Consensus 362 q-~~~R----------~CGRt-~dl~~~~~~i----~~l~~~~~~vmgciVNGpGE--~AD~g~V~~~~GkV 415 (640)
| .++| +|||| ||+|++++++ .|++++++++|||||||||| +|||||||.++|||
T Consensus 499 QaaR~R~sKte~isCP~CgRtlfdlq~t~~~i~~~t~Hl~g~kIaiMGCiVNGpGEmadAd~GyVG~gpgkI 570 (606)
T PRK00694 499 QSAGVRLVKTEYISCPGCGRTLFDLLEVTQRIRERTQHLPGLKIAVMGCIVNGPGEMADADFGFVGSKTGMI 570 (606)
T ss_pred HHhccccccceEEECCCCCceeehHHHHHHHHHHHhccCCCceEEEEEeEecCCccccccccceecCCCCeE
Confidence 9 8888 39998 9998877766 46899999999999999999 59999999999999
No 11
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=98.61 E-value=4.6e-06 Score=92.16 Aligned_cols=194 Identities=15% Similarity=0.197 Sum_probs=141.3
Q ss_pred cccccccCCCceeEEEce----eecCC-----------CCceEEEeccCCCCCCHHHHHHHHHHH-----HHcC----CC
Q 006566 78 ESIHKTVRRKTRTVMVGN----VAIGS-----------EHPIRVQTMTTNDTKDVAGTVEEVMRI-----ADQG----AD 133 (640)
Q Consensus 78 ~s~~~~~Rr~Tr~V~VG~----v~IGG-----------~~PI~VQSMt~t~T~Dv~atv~Qi~rl-----~~aG----ce 133 (640)
+.+.....-+-|+|+||. ++||| .||.+|=-.- +|+++-++-.+.++++ ...| +|
T Consensus 51 ~~l~~~~~ppi~~V~iG~G~~~~~iGGEtvL~rhe~tf~np~~Ia~eI-~D~l~~e~i~~r~~~~~~~~~~rvG~~~~AD 129 (450)
T PRK04165 51 EKLEEASAPPIREVKIGTGERAVKIGGETVLYRHEKTFFNPTGIAVDV-SDTMDDEEIDARLKKINNFQFERVGEILKLD 129 (450)
T ss_pred HHHHHHhCCCceeeeecCCCeEEEECCcceeeecCcCCCCCCEEEEEE-eCCCChHHHHHHHHHhhcchHhhhcccccCC
Confidence 344445556778999985 88999 4677776555 8888889999998888 6777 99
Q ss_pred EEEEecCCHHHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhhcCcee--eCCCCCCchhhhccccccchHHHHH
Q 006566 134 LVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIR--VNPGNFADRRAQFEQLEYTDDEYQK 211 (640)
Q Consensus 134 iVRvtvp~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~v~KVR--INPGN~~d~~k~F~~~eYtdeeY~~ 211 (640)
+|-|-..+- +.+.+..+.+.+++ .+++||+-|- |||.++.+|++.....| ||.-|. +
T Consensus 130 ~IaL~~~s~-dp~~v~~~Vk~V~~-~~dvPLSIDT-~dpevleaAleagad~~plI~Sat~---d--------------- 188 (450)
T PRK04165 130 MVALRNASG-DPEKFAKAVKKVAE-TTDLPLILCS-EDPAVLKAALEVVADRKPLLYAATK---E--------------- 188 (450)
T ss_pred EEEEeCCCC-CHHHHHHHHHHHHH-hcCCCEEEeC-CCHHHHHHHHHhcCCCCceEEecCc---c---------------
Confidence 999988766 44555555555543 3689999998 99999999999953333 666553 1
Q ss_pred HHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEEeCChhhHHH
Q 006566 212 ELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQ 291 (640)
Q Consensus 212 Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGdtp~gMVeSAle~~~i~e~~~F~diviSmKsSn~~~mV~ 291 (640)
++..+.+.|+++|.++ .+-| . . ++++.+.++.|++.|+.|+++.-=..+....++
T Consensus 189 -------N~~~m~~la~~yg~pv--Vv~~----~-----------d-l~~L~~lv~~~~~~GI~dIILDPg~ggf~ksl~ 243 (450)
T PRK04165 189 -------NYEEMAELAKEYNCPL--VVKA----P-----------N-LEELKELVEKLQAAGIKDLVLDPGTENIKETLD 243 (450)
T ss_pred -------hHHHHHHHHHHcCCcE--EEEc----h-----------h-HHHHHHHHHHHHHcCCCcEEECCCCchhhhhHH
Confidence 2677889999999999 3311 1 1 788999999999999999999765555555555
Q ss_pred HHHHHHHH---HHHcCCCcceEEEeecCCC
Q 006566 292 AYRLLVAE---MYVHGWDYPLHLGVTEAGE 318 (640)
Q Consensus 292 AyRlL~~~---m~~~g~dyPLHLGVTEAG~ 318 (640)
-|.++-.. ..-+-+.||+-.|++++..
T Consensus 244 ~~~~iRr~Al~~~~~~lgyPil~~~s~k~~ 273 (450)
T PRK04165 244 DFVQIRRAAIKKGDRPLGYPIIAFPIEAWM 273 (450)
T ss_pred HHHHHHhhhhhcccccCCCCEEEcchhhcc
Confidence 55544332 2333456999999998764
No 12
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=98.42 E-value=3.7e-07 Score=97.63 Aligned_cols=90 Identities=27% Similarity=0.454 Sum_probs=65.5
Q ss_pred CceEEEeecCCCCCCCchhHHHHHHHHHHHHCCCCCCEEEEeccCCCCCccchHHHHHHhhhhhhhccccceeeecCCCC
Q 006566 538 DATMILHDLPFNEDKIGRVQAARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGALLVDGLGDGLLLEAPGQ 617 (640)
Q Consensus 538 ~~~v~il~~~~~~~~~~~v~~~R~l~~~L~~~g~~~PVi~~~~y~~~~~~~~~~l~aa~d~GaLL~DGlGDGi~l~~~~~ 617 (640)
+.+++.++ +|+....+.++|.|.+++ ++|+ |.-+++.-..++-.+++|+.+|+||.||+||.|++.-...
T Consensus 175 ~~iviSlK---sSdv~~~i~ayr~la~~~-----dyPL--HLGvTEAG~~~~g~IkSsigiG~LL~~GIGDTIRVSLt~~ 244 (359)
T PF04551_consen 175 DDIVISLK---SSDVPETIEAYRLLAERM-----DYPL--HLGVTEAGTGEDGTIKSSIGIGALLLDGIGDTIRVSLTGD 244 (359)
T ss_dssp GGEEEEEE---BSSHHHHHHHHHHHHHH-------S-E--EEEBSSEESCHHHHHHHHHHHHHHHHTT--SEEEE-ECSS
T ss_pred CcEEEEEE---eCChHHHHHHHHHHHHhc-----CCCe--EEeecCCCCcccchhHHHHHHHHHHHcCCCCEEEEECCCC
Confidence 67889988 667777788888877765 4995 4455554456779999999999999999999999976644
Q ss_pred Chhhhhhhhhhhhhhcccccc
Q 006566 618 DFDFLRDTSFNLLQGVCLMSI 638 (640)
Q Consensus 618 ~~~~~~~~aF~ILQaaR~r~~ 638 (640)
+.+.+ .++|+|||+.++|..
T Consensus 245 p~~EV-~va~~IL~al~lR~~ 264 (359)
T PF04551_consen 245 PVEEV-KVAFEILQALGLRKR 264 (359)
T ss_dssp CCCHH-HHHHHHHHHTTSS-S
T ss_pred chHHH-HHHHHHHHHhCcCcC
Confidence 44443 589999999999974
No 13
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=97.68 E-value=0.0053 Score=62.95 Aligned_cols=209 Identities=21% Similarity=0.287 Sum_probs=136.5
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCC----------HHHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhhcCc
Q 006566 115 KDVAGTVEEVMRIADQGADLVRITVQG----------KREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDK 184 (640)
Q Consensus 115 ~Dv~atv~Qi~rl~~aGceiVRvtvp~----------~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~v~K 184 (640)
.|.++.+++++++.++||+||=|=..+ .+|.+.+..+.+.|++ .+++||.-|- |+|+++.+|++..-.
T Consensus 21 ~~~~~~~~~a~~~~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~-~~~~piSIDT-~~~~v~~aaL~~g~~ 98 (258)
T cd00423 21 LSLDKALEHARRMVEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAG-EPDVPISVDT-FNAEVAEAALKAGAD 98 (258)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHh-cCCCeEEEeC-CcHHHHHHHHHhCCC
Confidence 689999999999999999999887544 3566667777776653 4479998886 899999999998522
Q ss_pred eeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCc-HhHHHHhCCChHHHHHHHH
Q 006566 185 IRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLS-DRIMSYYGDSPRGMVESAF 263 (640)
Q Consensus 185 VRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs-~ril~ryGdtp~gMVeSAl 263 (640)
+ ||-=+-...+ ..+++.||++|.++=+-.+.|.=. ..-...|.++.+.+++.+.
T Consensus 99 i-INdis~~~~~------------------------~~~~~l~~~~~~~vV~m~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (258)
T cd00423 99 I-INDVSGGRGD------------------------PEMAPLAAEYGAPVVLMHMDGTPQTMQNNPYYADVVDEVVEFLE 153 (258)
T ss_pred E-EEeCCCCCCC------------------------hHHHHHHHHcCCCEEEECcCCCCcccccCCCcchHHHHHHHHHH
Confidence 2 5643332110 246788899999985555444210 0112347778899999999
Q ss_pred HHHHHHHHCCC--CcEEE-----EEEeCChhhHHHHHHHHHHHHHHcCCCcceEEEe---ecCCC----CCccee-ehHH
Q 006566 264 EFARICRKLDF--HNFLF-----SMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGV---TEAGE----GEDGRM-KSAI 328 (640)
Q Consensus 264 e~~~i~e~~~F--~divi-----SmKsSn~~~mV~AyRlL~~~m~~~g~dyPLHLGV---TEAG~----gedGrI-KSAi 328 (640)
+.++.|++.|+ ++|+| ..| +...-....|.+.. +.+. ..||+-+|+ ++-+. +...|. -+++
T Consensus 154 ~~i~~~~~~Gi~~~~IilDPg~g~~k--~~~~~~~~l~~i~~-~~~~-~g~Pil~G~Snksf~~~~~~~~~~~R~~~t~a 229 (258)
T cd00423 154 ERVEAATEAGIPPEDIILDPGIGFGK--TEEHNLELLRRLDA-FREL-PGLPLLLGVSRKSFLGDLLSVGPKDRLAGTAA 229 (258)
T ss_pred HHHHHHHHcCCCHHHEEEeCCCCccC--CHHHHHHHHHHHHH-HHhc-CCCcEEEEeccchhhcccCCCChHHhhHHHHH
Confidence 99999999994 67877 345 33323333333332 2222 379999997 45442 122233 2455
Q ss_pred HHHHHhhhcCCcEEEeecCCCCchhhHHHHH
Q 006566 329 GIGTLLQDGLGDTIRVSLTEPPEKEIDPCRR 359 (640)
Q Consensus 329 GIG~LL~DGIGDTIRVSLTedP~~Ei~va~~ 359 (640)
........| -|-+||- |+.|..-+..
T Consensus 230 ~~~~a~~~G-~~~~rvh----~v~~~~~a~~ 255 (258)
T cd00423 230 FLAAAILNG-ADIVRVH----DVKELRDAIK 255 (258)
T ss_pred HHHHHHHcC-CCEEEEC----CCHHHHHHHH
Confidence 556667777 5888864 3555544443
No 14
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=97.58 E-value=0.013 Score=60.61 Aligned_cols=194 Identities=16% Similarity=0.255 Sum_probs=126.5
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEec----CC------HHHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhh-c
Q 006566 114 TKDVAGTVEEVMRIADQGADLVRITV----QG------KREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-F 182 (640)
Q Consensus 114 T~Dv~atv~Qi~rl~~aGceiVRvtv----p~------~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~-v 182 (640)
+.|.+..+++++++.++||++|=|-. |+ .+|.+.+..+.+.|++ .+++||.-|. |+|+++.+|++. +
T Consensus 20 ~~~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~-~~~~plSIDT-~~~~v~e~al~~G~ 97 (257)
T cd00739 20 FLSLDKAVAHAEKMIAEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRG-ELDVLISVDT-FRAEVARAALEAGA 97 (257)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHh-cCCCcEEEeC-CCHHHHHHHHHhCC
Confidence 46899999999999999999999943 22 3455555555565553 3589999997 889999999998 3
Q ss_pred CceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhH--HHHhCCChHHHHH
Q 006566 183 DKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRI--MSYYGDSPRGMVE 260 (640)
Q Consensus 183 ~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ri--l~ryGdtp~gMVe 260 (640)
+= ||-=+-...+ ..+.+.++++|.++=+--+.| .+... ...|.|..+.+++
T Consensus 98 ~i--INdisg~~~~------------------------~~~~~l~~~~~~~vV~m~~~g-~p~~~~~~~~~~~~~~~~~~ 150 (257)
T cd00739 98 DI--INDVSGGSDD------------------------PAMLEVAAEYGAPLVLMHMRG-TPKTMQENPYYEDVVDEVLS 150 (257)
T ss_pred CE--EEeCCCCCCC------------------------hHHHHHHHHcCCCEEEECCCC-CCcccccCCCcccHHHHHHH
Confidence 32 5533322110 235678889999985533334 44332 1336666789999
Q ss_pred HHHHHHHHHHHCCCC--cEEEE-----EEeC-ChhhHHHHHHHHHHHHHHcCCCcceEEEe---------ecCCCCCcce
Q 006566 261 SAFEFARICRKLDFH--NFLFS-----MKAS-NPVVMVQAYRLLVAEMYVHGWDYPLHLGV---------TEAGEGEDGR 323 (640)
Q Consensus 261 SAle~~~i~e~~~F~--diviS-----mKsS-n~~~mV~AyRlL~~~m~~~g~dyPLHLGV---------TEAG~gedGr 323 (640)
.+.+.++.|++.|+. +|++- .|+. .-..+++.+++|-+ .++|+-+|+ ||- ....|
T Consensus 151 ~~~~~i~~~~~~Gi~~~~Ii~DPg~gf~ks~~~~~~~l~~i~~l~~------~~~pil~G~SrkSfig~~~~~--~~~~r 222 (257)
T cd00739 151 FLEARLEAAESAGVARNRIILDPGIGFGKTPEHNLELLRRLDELKQ------LGLPVLVGASRKSFIGALLGR--EPKDR 222 (257)
T ss_pred HHHHHHHHHHHcCCCHHHEEEecCCCcccCHHHHHHHHHHHHHHHh------CCCcEEEEecccHHHHHhcCC--Ccccc
Confidence 999999999999996 77653 3331 11223444444433 289999998 542 23345
Q ss_pred eehHHHHHH-HhhhcCCcEEEee
Q 006566 324 MKSAIGIGT-LLQDGLGDTIRVS 345 (640)
Q Consensus 324 IKSAiGIG~-LL~DGIGDTIRVS 345 (640)
.-.++.+-. +...| .|=|||.
T Consensus 223 ~~~t~~~~~~~~~~G-a~iiRvH 244 (257)
T cd00739 223 DWGTLALSALAAANG-ADIVRVH 244 (257)
T ss_pred chhHHHHHHHHHHcC-CCEEEeC
Confidence 555555544 44444 4777764
No 15
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=97.54 E-value=0.0062 Score=68.65 Aligned_cols=223 Identities=16% Similarity=0.140 Sum_probs=145.4
Q ss_pred eEEEceeecCCCC-ceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCH-HHHHHHHHHHHHhhcCCCCcceeec
Q 006566 90 TVMVGNVAIGSEH-PIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGK-READACFEIKNSLVQKNYNIPLVAD 167 (640)
Q Consensus 90 ~V~VG~v~IGG~~-PI~VQSMt~t~T~Dv~atv~Qi~rl~~aGceiVRvtvp~~-~~A~~l~~I~~~L~~~g~~iPLVAD 167 (640)
...||++.||+.. |++|=..-.-.+. .+..++++.++.++|||||=|-..+- .+++.+..+.+.|++. +++|+.-|
T Consensus 137 ~~~i~~~~i~~~~p~~~v~aEI~~a~~-l~~i~~~A~~~~~~GADIIDIG~~st~p~~~~v~~~V~~l~~~-~~~pISID 214 (499)
T TIGR00284 137 DFRIGSLKIPLKPPPLRVVAEIPPTVA-EDGIEGLAARMERDGADMVALGTGSFDDDPDVVKEKVKTALDA-LDSPVIAD 214 (499)
T ss_pred hhhccCcCCCCCCCCeEEEEEEcCCcc-hHHHHHHHHHHHHCCCCEEEECCCcCCCcHHHHHHHHHHHHhh-CCCcEEEe
Confidence 4788999999999 6999998754442 28899999999999999999987643 4555566666666643 47999999
Q ss_pred cCCCHHHHHHHhhh-cCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHh
Q 006566 168 IHFAPSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDR 246 (640)
Q Consensus 168 IHF~~~~Al~Aa~~-v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~r 246 (640)
. |+|.++..|+++ ++ =||--+- . ++..+...|+++|.++ |.+ |-.-
T Consensus 215 T-~~~~v~eaAL~aGAd--iINsVs~---~----------------------~~d~~~~l~a~~g~~v-Vlm-~~~~--- 261 (499)
T TIGR00284 215 T-PTLDELYEALKAGAS--GVIMPDV---E----------------------NAVELASEKKLPEDAF-VVV-PGNQ--- 261 (499)
T ss_pred C-CCHHHHHHHHHcCCC--EEEECCc---c----------------------chhHHHHHHHHcCCeE-EEE-cCCC---
Confidence 7 789999999988 44 2562221 1 1445778899999998 444 3211
Q ss_pred HHHHhCCChHHHHHHHHHHHHHHHHCCCCcEEEEE----EeCChhhHHHHHHHHHHHHHHcCCCcceEEEeecCCCC--C
Q 006566 247 IMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSM----KASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEG--E 320 (640)
Q Consensus 247 il~ryGdtp~gMVeSAle~~~i~e~~~F~diviSm----KsSn~~~mV~AyRlL~~~m~~~g~dyPLHLGVTEAG~g--e 320 (640)
+.-.++..+.++.|++.|+.+|++-- -.......+++|+.+-++ +.+|+=+|+..--+. .
T Consensus 262 ---------~~~~~~l~~~ie~a~~~Gi~~IIlDPglg~~~~~l~~sL~~l~~~r~~-----~~~Pil~GvSNvtel~da 327 (499)
T TIGR00284 262 ---------PTNYEELAKAVKKLRTSGYSKVAADPSLSPPLLGLLESIIRFRRASRL-----LNVPLVFGAANVTELVDA 327 (499)
T ss_pred ---------CchHHHHHHHHHHHHHCCCCcEEEeCCCCcchHHHHHHHHHHHHHHHh-----cCCcEEEeeccccCCCcc
Confidence 11127888899999999998776531 111223334555555444 569999998422111 1
Q ss_pred cceeehHHHHHHHhhhcCCcEEEeecC----CCCchhhHHHHHHHh
Q 006566 321 DGRMKSAIGIGTLLQDGLGDTIRVSLT----EPPEKEIDPCRRLAN 362 (640)
Q Consensus 321 dGrIKSAiGIG~LL~DGIGDTIRVSLT----edP~~Ei~va~~ILq 362 (640)
|-.--+++-.+....-|+ +-|||.=. --.+.|...|..+..
T Consensus 328 Ds~g~naal~~~a~e~Ga-~ilrvhd~S~k~r~sV~E~~~A~~m~~ 372 (499)
T TIGR00284 328 DSHGVNALLAAIALEAGA-SILYVVEDSYKSYRSTAEAAEAAKMAS 372 (499)
T ss_pred chhHHHHHHHHHHHHcCC-CEEEEcCCcccccccHHHHHHHHHHHH
Confidence 211123333333444454 67776531 123678888888777
No 16
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=97.49 E-value=0.0085 Score=61.92 Aligned_cols=192 Identities=18% Similarity=0.286 Sum_probs=123.7
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEec----CCH------HHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhh-cC
Q 006566 115 KDVAGTVEEVMRIADQGADLVRITV----QGK------READACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FD 183 (640)
Q Consensus 115 ~Dv~atv~Qi~rl~~aGceiVRvtv----p~~------~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~-v~ 183 (640)
.|.++.+++++++.++|++++=|-. |+. +|.+.+..+.+.+++ ..++||..|.+ +|.++.+|++. ++
T Consensus 20 ~~~~~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~-~~~~plsiDT~-~~~vi~~al~~G~~ 97 (257)
T TIGR01496 20 LSVDKAVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRD-QPDVPISVDTY-RAEVARAALEAGAD 97 (257)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHh-cCCCeEEEeCC-CHHHHHHHHHcCCC
Confidence 5789999999999999999999942 322 355566666666653 34799999984 79999999988 33
Q ss_pred ceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhH--HHHhCCChHHHHHH
Q 006566 184 KIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRI--MSYYGDSPRGMVES 261 (640)
Q Consensus 184 KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ri--l~ryGdtp~gMVeS 261 (640)
=||-.+... . .++.+.+|++|.++=+--+.| .+... ...|.|..+.+.+.
T Consensus 98 --iINsis~~~-~------------------------~~~~~l~~~~~~~vV~m~~~g-~p~~~~~~~~~~~~~~~~~~~ 149 (257)
T TIGR01496 98 --IINDVSGGQ-D------------------------PAMLEVAAEYGVPLVLMHMRG-TPRTMQENPHYEDVVEEVLRF 149 (257)
T ss_pred --EEEECCCCC-C------------------------chhHHHHHHcCCcEEEEeCCC-CCcccccCCCcccHHHHHHHH
Confidence 278776652 1 124556889999985544444 33321 12355667889999
Q ss_pred HHHHHHHHHHCCC--CcEEEEE-----EeC-ChhhHHHHHHHHHHHHHHcCCCcceEEEe---------ecCCCCCccee
Q 006566 262 AFEFARICRKLDF--HNFLFSM-----KAS-NPVVMVQAYRLLVAEMYVHGWDYPLHLGV---------TEAGEGEDGRM 324 (640)
Q Consensus 262 Ale~~~i~e~~~F--~diviSm-----KsS-n~~~mV~AyRlL~~~m~~~g~dyPLHLGV---------TEAG~gedGrI 324 (640)
+.+.++.|++.|+ .|++|-= |+. .-..+++.++.|. + +.+|+-+|+ ||- ...-|.
T Consensus 150 ~~~~i~~~~~~Gi~~~~iilDPg~gf~ks~~~~~~~l~~i~~l~----~--~~~p~l~G~SrkSfig~v~~~--~~~~r~ 221 (257)
T TIGR01496 150 LEARAEELVAAGVAAERIILDPGIGFGKTPEHNLELLKHLEEFV----A--LGYPLLVGASRKSFIGALLGT--PPEERL 221 (257)
T ss_pred HHHHHHHHHHcCCCHHHEEEECCCCcccCHHHHHHHHHHHHHHH----h--CCCcEEEEecccHHHHhhcCC--Chhhhh
Confidence 9999999999999 5887752 321 0112333444332 2 459999998 442 223344
Q ss_pred ehHHHHHH-HhhhcCCcEEEee
Q 006566 325 KSAIGIGT-LLQDGLGDTIRVS 345 (640)
Q Consensus 325 KSAiGIG~-LL~DGIGDTIRVS 345 (640)
-.++.+-. +...|. |-|||-
T Consensus 222 ~~t~~~~~~a~~~Ga-~iiR~H 242 (257)
T TIGR01496 222 EGTLAASAYAVQKGA-DIVRVH 242 (257)
T ss_pred HHHHHHHHHHHHcCC-CEEEeC
Confidence 44444433 444444 777753
No 17
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=97.37 E-value=0.013 Score=60.82 Aligned_cols=191 Identities=14% Similarity=0.162 Sum_probs=130.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCC--HHHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhhcCce-eeCCCC
Q 006566 115 KDVAGTVEEVMRIADQGADLVRITVQG--KREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKI-RVNPGN 191 (640)
Q Consensus 115 ~Dv~atv~Qi~rl~~aGceiVRvtvp~--~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~v~KV-RINPGN 191 (640)
.|.+..+++.+++.++||+++=|-+.. .+|.+.+....+.|++ .+++||.-|. ++|.++.+|++++... =||-=|
T Consensus 22 ~d~~~i~~~A~~~~~~GAdiIDVg~~~~~~eE~~r~~~~v~~l~~-~~~~plsIDT-~~~~v~eaaL~~~~G~~iINsIs 99 (261)
T PRK07535 22 KDAAFIQKLALKQAEAGADYLDVNAGTAVEEEPETMEWLVETVQE-VVDVPLCIDS-PNPAAIEAGLKVAKGPPLINSVS 99 (261)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHHHH-hCCCCEEEeC-CCHHHHHHHHHhCCCCCEEEeCC
Confidence 789999999999999999999987643 4667777777777664 3589999996 7899999999985432 255444
Q ss_pred CCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCC-CCcHhHHHHhCCChHHHHHHHHHHHHHHH
Q 006566 192 FADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHG-SLSDRIMSYYGDSPRGMVESAFEFARICR 270 (640)
Q Consensus 192 ~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhG-SLs~ril~ryGdtp~gMVeSAle~~~i~e 270 (640)
-.. . ++..+++.+|++|+++=+=.+|. ..+ .|++..++.+.+.++.|+
T Consensus 100 ~~~-~----------------------~~~~~~~l~~~~g~~vv~m~~~~~g~P--------~t~~~~~~~l~~~v~~a~ 148 (261)
T PRK07535 100 AEG-E----------------------KLEVVLPLVKKYNAPVVALTMDDTGIP--------KDAEDRLAVAKELVEKAD 148 (261)
T ss_pred CCC-c----------------------cCHHHHHHHHHhCCCEEEEecCCCCCC--------CCHHHHHHHHHHHHHHHH
Confidence 321 1 24567888999999984434331 111 255667899999999999
Q ss_pred HCCC--CcEEEE-----EEeC--ChhhHHHHHHHHHHHHHHcCC-CcceEEEeecCCCCCcc-eeehHHHHHHHhhhcCC
Q 006566 271 KLDF--HNFLFS-----MKAS--NPVVMVQAYRLLVAEMYVHGW-DYPLHLGVTEAGEGEDG-RMKSAIGIGTLLQDGLG 339 (640)
Q Consensus 271 ~~~F--~diviS-----mKsS--n~~~mV~AyRlL~~~m~~~g~-dyPLHLGVTEAG~gedG-rIKSAiGIG~LL~DGIG 339 (640)
+.|+ ++|+|- ..++ ....++++++.+.+. + .||+=+|+.---.|..- .+=.++=++-.+.-|+-
T Consensus 149 ~~GI~~~~IilDPgi~~~~~~~~~~~~~l~~i~~l~~~-----~pg~p~l~G~Sn~Sfglp~r~~in~~fl~~a~~~Gl~ 223 (261)
T PRK07535 149 EYGIPPEDIYIDPLVLPLSAAQDAGPEVLETIRRIKEL-----YPKVHTTCGLSNISFGLPNRKLINRAFLVMAMGAGMD 223 (261)
T ss_pred HcCCCHhHEEEeCCCCcccCChHHHHHHHHHHHHHHHh-----CCCCCEEEEeCCCccCCcchHHHHHHHHHHHHHcCCC
Confidence 9999 588763 2221 134557778877776 6 69999999766444422 22223334444555665
Q ss_pred cEEE
Q 006566 340 DTIR 343 (640)
Q Consensus 340 DTIR 343 (640)
-.|-
T Consensus 224 ~aI~ 227 (261)
T PRK07535 224 SAIL 227 (261)
T ss_pred EEee
Confidence 5554
No 18
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=97.34 E-value=0.0087 Score=64.11 Aligned_cols=183 Identities=18% Similarity=0.273 Sum_probs=120.3
Q ss_pred CceeEEE-ce----eecCCCCce---E---------EEeccCCCCCC------HHHHHHHH--------HHHH-HcCCCE
Q 006566 87 KTRTVMV-GN----VAIGSEHPI---R---------VQTMTTNDTKD------VAGTVEEV--------MRIA-DQGADL 134 (640)
Q Consensus 87 ~Tr~V~V-G~----v~IGG~~PI---~---------VQSMt~t~T~D------v~atv~Qi--------~rl~-~aGcei 134 (640)
+-|+|.| |. ++|||+.-. | +=.|.-.|+.+ +.+-++.+ +++. ++|+|+
T Consensus 13 ~I~eV~igG~g~~~v~iGGe~vlpf~r~e~~~~n~p~ia~~v~D~~~~~~~~~i~~~~~~v~~~p~~~Ak~q~~~~GAd~ 92 (319)
T PRK04452 13 KIREVTLGGTGPKTVKLGGETALPFYHFEGPMPNPPVIAMEVFDMPPEDWPEAVKEPFGDVMNDPAAWAKKCVEEYGADM 92 (319)
T ss_pred ceEEEEEeeecceeEEECCcccccccccCCCCCCCCeEEEEEecCCCcccHHHHHHHHHHHhcCHHHHHHHHHHHhCCCE
Confidence 4578999 53 789986543 1 11233334433 34444443 4555 999999
Q ss_pred EEEec----CCH--HHHHHHHHHHHHhhcCCCCcceeeccCC----CHHHHHHHhhhcC-c-eeeCCCCCCchhhhcccc
Q 006566 135 VRITV----QGK--READACFEIKNSLVQKNYNIPLVADIHF----APSVALRVAECFD-K-IRVNPGNFADRRAQFEQL 202 (640)
Q Consensus 135 VRvtv----p~~--~~A~~l~~I~~~L~~~g~~iPLVADIHF----~~~~Al~Aa~~v~-K-VRINPGN~~d~~k~F~~~ 202 (640)
|-|-. |+. ++.+.+....+.+ +..+++||+-|.=+ ||.+..+|++.+. + .=||+=|.
T Consensus 93 Idl~~~s~dp~~~d~~~~e~~~~Vk~V-~eavd~PL~Id~s~n~~kD~evleaale~~~g~~pLInSat~---------- 161 (319)
T PRK04452 93 ITLHLISTDPNGKDKSPEEAAKTVEEV-LQAVDVPLIIGGSGNPEKDAEVLEKVAEAAEGERCLLGSAEE---------- 161 (319)
T ss_pred EEEECCCCCcccccchHHHHHHHHHHH-HHhCCCCEEEecCCCCCCCHHHHHHHHHHhCCCCCEEEECCH----------
Confidence 98874 421 1233333333332 23599999999999 7999999999866 3 22665442
Q ss_pred ccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCc-HhHHHHhCCChHHHHHHHHHHHHHHHHCCC--CcEEE
Q 006566 203 EYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLS-DRIMSYYGDSPRGMVESAFEFARICRKLDF--HNFLF 279 (640)
Q Consensus 203 eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs-~ril~ryGdtp~gMVeSAle~~~i~e~~~F--~divi 279 (640)
++++.+...||+||.++ .+ ++ ++ ++-|.+-.+.+.++|+ +||+|
T Consensus 162 ---------------en~~~i~~lA~~y~~~V--va----~s~~D------------ln~ak~L~~~l~~~Gi~~edIvi 208 (319)
T PRK04452 162 ---------------DNYKKIAAAAMAYGHAV--IA----WSPLD------------INLAKQLNILLTELGVPRERIVM 208 (319)
T ss_pred ---------------HHHHHHHHHHHHhCCeE--EE----EcHHH------------HHHHHHHHHHHHHcCCCHHHEEE
Confidence 13888999999999988 33 22 22 7889999999999999 99998
Q ss_pred EEEeC----C---hhhHHHHHHHHHHHHHHcCCCcceEEEee
Q 006566 280 SMKAS----N---PVVMVQAYRLLVAEMYVHGWDYPLHLGVT 314 (640)
Q Consensus 280 SmKsS----n---~~~mV~AyRlL~~~m~~~g~dyPLHLGVT 314 (640)
--=.. + ....++.-|+++=+ .-+-+.||+--+++
T Consensus 209 DP~~~~lg~g~e~~~~~~e~IR~aAl~-~d~~l~~P~i~~~~ 249 (319)
T PRK04452 209 DPTTGALGYGIEYSYSVMERIRLAALK-GDEMLQMPMISGVG 249 (319)
T ss_pred eCCcccccCCHHHHHHHHHHHHHHHhc-CCCcCCCCeEecch
Confidence 64443 2 23446666776654 45557799988887
No 19
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=97.20 E-value=0.011 Score=64.70 Aligned_cols=216 Identities=19% Similarity=0.235 Sum_probs=141.4
Q ss_pred CceeEEEc----------eeecCCCCceEE----------EeccCCCC-C-C----HHHHHHHHH---------HHHHcC
Q 006566 87 KTRTVMVG----------NVAIGSEHPIRV----------QTMTTNDT-K-D----VAGTVEEVM---------RIADQG 131 (640)
Q Consensus 87 ~Tr~V~VG----------~v~IGG~~PI~V----------QSMt~t~T-~-D----v~atv~Qi~---------rl~~aG 131 (640)
+-|+|.|| .++|||+.|.-- =.|.-+|+ + | +.+-++.+. +..+.|
T Consensus 74 ~I~eV~iGat~~~G~~~kav~iGGEtvfyrhE~~~~npp~ia~dV~D~~~~~~~~~i~~~~~dV~~dP~~wak~~V~~~~ 153 (389)
T TIGR00381 74 KIEEVVLGATKAEGTREKTVTLGGQRALYRFEEPQPNPPVVTFDVFDIPMPGLPKPIRMHFEDVMEDPAEWARKCVKEFG 153 (389)
T ss_pred eeEEEEEccccCCCCcceeEEECCcccceecCcCCCCCCeEEEEEecCCccccHHHHHHHHHHHhcCHHHHHHHHHHHhC
Confidence 45789996 588999886431 12333344 2 3 444444444 335899
Q ss_pred CCEEEEec--CCHH--------HHHHHHHHHHHhhcCCCCcceeec----cCCCHHHHHHHhhhcCc--eeeCCCCCCch
Q 006566 132 ADLVRITV--QGKR--------EADACFEIKNSLVQKNYNIPLVAD----IHFAPSVALRVAECFDK--IRVNPGNFADR 195 (640)
Q Consensus 132 ceiVRvtv--p~~~--------~A~~l~~I~~~L~~~g~~iPLVAD----IHF~~~~Al~Aa~~v~K--VRINPGN~~d~ 195 (640)
+|+|.|-- .|.+ .|+..+.+.+ .+++|||=| --+||.+..+|++.+.. .=||+=|..+
T Consensus 154 aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V~~-----av~vPLIL~gsg~~~kD~eVLeaaLe~~~G~kpLL~SAt~e~- 227 (389)
T TIGR00381 154 ADMVTIHLISTDPKLDDKSPSEAAKVLEDVLQ-----AVDVPIVIGGSGNPEKDPLVLEKAAEVAEGERCLLASANLDL- 227 (389)
T ss_pred CCEEEEEecCCCccccccCHHHHHHHHHHHHH-----hCCCCEEEeCCCCCcCCHHHHHHHHHHhCCCCcEEEecCchh-
Confidence 99987654 3333 5666666655 599999988 36899999999999644 5578777653
Q ss_pred hhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCc-HhHHHHhCCChHHHHHHHHHHHHHHHHCCC
Q 006566 196 RAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLS-DRIMSYYGDSPRGMVESAFEFARICRKLDF 274 (640)
Q Consensus 196 ~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs-~ril~ryGdtp~gMVeSAle~~~i~e~~~F 274 (640)
+|+.+.+.||+||.++ ++ .+ +. ++.|.+.-+.|.++||
T Consensus 228 -----------------------Ny~~ia~lAk~yg~~V--vv----~s~~D------------in~ak~Ln~kL~~~Gv 266 (389)
T TIGR00381 228 -----------------------DYEKIANAAKKYGHVV--LS----WTIMD------------INMQKTLNRYLLKRGL 266 (389)
T ss_pred -----------------------hHHHHHHHHHHhCCeE--EE----EcCCc------------HHHHHHHHHHHHHcCC
Confidence 2788999999999988 44 21 11 2334445555779999
Q ss_pred C--cEEEEEEe----CCh---hhHHHHHHHHHHHHHHcCCCcceEEEeecCCCCCcceeehHHHHHHHhhhcCCcEEEee
Q 006566 275 H--NFLFSMKA----SNP---VVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVS 345 (640)
Q Consensus 275 ~--diviSmKs----Sn~---~~mV~AyRlL~~~m~~~g~dyPLHLGVTEAG~gedGrIKSAiGIG~LL~DGIGDTIRVS 345 (640)
. ||||--=. ... ...+..-|+.+=+ .-+-+.||+--++|||..-.+.+.+ ....||.=+
T Consensus 267 ~~eDIVlDP~t~alG~Gieya~s~~erIRraALk-gD~~L~~Pii~~~~~~w~~kEa~~~---------~~~wG~~~~-- 334 (389)
T TIGR00381 267 MPRDIVMDPTTCALGYGIEFSITNMERIRLSGLK-GDTDLNMPMSSGTTNAWGAREAWMV---------DSEWGPREY-- 334 (389)
T ss_pred CHHHEEEcCCCccccCCHHHHHHHHHHHHHHHhc-CCcCCCCCeeccchhhhhheeeccC---------CCCCCChHH--
Confidence 9 99997555 222 3345566655543 4444679999999999887777776 234555411
Q ss_pred cCCCCchhhHHHHHHHhh
Q 006566 346 LTEPPEKEIDPCRRLANL 363 (640)
Q Consensus 346 LTedP~~Ei~va~~ILq~ 363 (640)
--|.-|+-.|..+|..
T Consensus 335 --Rg~lwE~~ta~~~~~a 350 (389)
T TIGR00381 335 --RGPLWEIITGLTMMLA 350 (389)
T ss_pred --hchhhhHHHHHHHHHc
Confidence 1234567777777763
No 20
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=97.18 E-value=0.041 Score=57.48 Aligned_cols=150 Identities=17% Similarity=0.201 Sum_probs=104.1
Q ss_pred CCceeEEEceeecCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecC-------CHH--HHHHHHHHHHHhh
Q 006566 86 RKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQ-------GKR--EADACFEIKNSLV 156 (640)
Q Consensus 86 r~Tr~V~VG~v~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~rl~~aGceiVRvtvp-------~~~--~A~~l~~I~~~L~ 156 (640)
.+..+|.+|++.||++..+.|-=.+.. .|.+.+.+-.++|.++|.+++|..+- +.+ -.+.++.+++..+
T Consensus 11 ~~~~~~~~~~~~~g~~~~~~iaGPCsi--e~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~ 88 (266)
T PRK13398 11 GEKTIVKVGDVVIGGEEKIIIAGPCAV--ESEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGD 88 (266)
T ss_pred CCCcEEEECCEEEcCCCEEEEEeCCcC--CCHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHH
Confidence 346679999999999866677666555 47899999999999999999999822 112 2344444444332
Q ss_pred cCCCCcceeeccCCCHHHHHHHhhhcCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEE
Q 006566 157 QKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRI 236 (640)
Q Consensus 157 ~~g~~iPLVADIHF~~~~Al~Aa~~v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRI 236 (640)
...+|.++++|- +.-+..+.+.++-+-|--+++-+ .++++.+-..|.||
T Consensus 89 --~~Gl~~~te~~d-~~~~~~l~~~vd~~kIga~~~~n--------------------------~~LL~~~a~~gkPV-- 137 (266)
T PRK13398 89 --KYNLPVVTEVMD-TRDVEEVADYADMLQIGSRNMQN--------------------------FELLKEVGKTKKPI-- 137 (266)
T ss_pred --HcCCCEEEeeCC-hhhHHHHHHhCCEEEECcccccC--------------------------HHHHHHHhcCCCcE--
Confidence 477999999975 55555556779989998888865 35778888899999
Q ss_pred eeCCCCCcHhHHHHhCCChHHHHHHHHHHHHHHHHCCCCcEEEEE
Q 006566 237 GTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSM 281 (640)
Q Consensus 237 GvNhGSLs~ril~ryGdtp~gMVeSAle~~~i~e~~~F~diviSm 281 (640)
++-.|-- .+++.+..+ ++.+++.|=.++++--
T Consensus 138 ~lk~G~~---------~s~~e~~~A----~e~i~~~Gn~~i~L~~ 169 (266)
T PRK13398 138 LLKRGMS---------ATLEEWLYA----AEYIMSEGNENVVLCE 169 (266)
T ss_pred EEeCCCC---------CCHHHHHHH----HHHHHhcCCCeEEEEE
Confidence 4433300 144444444 3456788888887743
No 21
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=96.98 E-value=0.04 Score=59.89 Aligned_cols=192 Identities=15% Similarity=0.180 Sum_probs=125.5
Q ss_pred CceeEEEceeecCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEe------------cCCHHHHHHHHHHHHH
Q 006566 87 KTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRIT------------VQGKREADACFEIKNS 154 (640)
Q Consensus 87 ~Tr~V~VG~v~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~rl~~aGceiVRvt------------vp~~~~A~~l~~I~~~ 154 (640)
.+..|.+|++.|||++|..|- --..-.+-+...+..++|.++|..++|-. -++.+.-+.|.+.+++
T Consensus 103 ~~~~~~~~~~~~g~~~~~~ia--Gpc~iE~~~~~~~~A~~lk~~g~~~~r~~~~kpRtsp~~f~g~~~e~l~~L~~~~~~ 180 (360)
T PRK12595 103 EDTIVDVKGEVIGDGNQSFIF--GPCSVESYEQVEAVAKALKAKGLKLLRGGAFKPRTSPYDFQGLGVEGLKILKQVADE 180 (360)
T ss_pred CCCEEEECCEEecCCCeeeEE--ecccccCHHHHHHHHHHHHHcCCcEEEccccCCCCCCccccCCCHHHHHHHHHHHHH
Confidence 467799999999999998875 22333457788888999999999999965 2345566666666664
Q ss_pred hhcCCCCcceeeccCCCHHHHHHHhhhcCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeE
Q 006566 155 LVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAV 234 (640)
Q Consensus 155 L~~~g~~iPLVADIHF~~~~Al~Aa~~v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aI 234 (640)
..+|.++++|= +.-+..+.++++-+-|--+|+.+ .+|++.+-+.|.||
T Consensus 181 -----~Gl~~~t~v~d-~~~~~~l~~~vd~lkI~s~~~~n--------------------------~~LL~~~a~~gkPV 228 (360)
T PRK12595 181 -----YGLAVISEIVN-PADVEVALDYVDVIQIGARNMQN--------------------------FELLKAAGRVNKPV 228 (360)
T ss_pred -----cCCCEEEeeCC-HHHHHHHHHhCCeEEECcccccC--------------------------HHHHHHHHccCCcE
Confidence 88999999975 55555666779999999999976 26888888999999
Q ss_pred EEeeCCCCCcHhHHHHhCCChHHHHHHHHHHHHHHHHCCCCcEEEE--EEeC-----ChhhHHHHHHHHHHHHHHcCCCc
Q 006566 235 RIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFS--MKAS-----NPVVMVQAYRLLVAEMYVHGWDY 307 (640)
Q Consensus 235 RIGvNhGSLs~ril~ryGdtp~gMVeSAle~~~i~e~~~F~diviS--mKsS-----n~~~mV~AyRlL~~~m~~~g~dy 307 (640)
=+=+.-+ .|++. ++.|.|++ .+.|-+++++- .=++ .-..-+.+...|-++ +++
T Consensus 229 ilk~G~~-----------~t~~e-~~~Ave~i---~~~Gn~~i~L~erg~s~yp~~~~~~ldl~~i~~lk~~-----~~~ 288 (360)
T PRK12595 229 LLKRGLS-----------ATIEE-FIYAAEYI---MSQGNGQIILCERGIRTYEKATRNTLDISAVPILKQE-----THL 288 (360)
T ss_pred EEeCCCC-----------CCHHH-HHHHHHHH---HHCCCCCEEEECCccCCCCCCCCCCcCHHHHHHHHHH-----hCC
Confidence 4433210 24433 34455554 46777777664 2221 001224444444444 678
Q ss_pred ceEEEeecCCCCCcc---eeehHHHHHH
Q 006566 308 PLHLGVTEAGEGEDG---RMKSAIGIGT 332 (640)
Q Consensus 308 PLHLGVTEAG~gedG---rIKSAiGIG~ 332 (640)
|.=++.|-++.-.+. .-+.|+.+|+
T Consensus 289 PV~~d~~Hs~G~r~~~~~~a~aAva~GA 316 (360)
T PRK12595 289 PVMVDVTHSTGRRDLLLPTAKAALAIGA 316 (360)
T ss_pred CEEEeCCCCCcchhhHHHHHHHHHHcCC
Confidence 866655776432222 2344666665
No 22
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=96.85 E-value=0.12 Score=54.58 Aligned_cols=194 Identities=18% Similarity=0.288 Sum_probs=117.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEec----CCH------HHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhh-cC
Q 006566 115 KDVAGTVEEVMRIADQGADLVRITV----QGK------READACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FD 183 (640)
Q Consensus 115 ~Dv~atv~Qi~rl~~aGceiVRvtv----p~~------~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~-v~ 183 (640)
.|+++.++++.++.+.||+||=|=. |+. +|.+-+..+.+.|++ .+++|+--|. |+|.+|.+|+++ ++
T Consensus 35 ~~~~~a~~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~-~~~~~ISIDT-~~~~va~~AL~~Gad 112 (282)
T PRK11613 35 NSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQ-RFEVWISVDT-SKPEVIRESAKAGAH 112 (282)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHh-cCCCeEEEEC-CCHHHHHHHHHcCCC
Confidence 5899999999999999999999874 333 233333334455553 3479999996 889999999998 55
Q ss_pred cee-eCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHH--HHhCCChHHHHH
Q 006566 184 KIR-VNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIM--SYYGDSPRGMVE 260 (640)
Q Consensus 184 KVR-INPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril--~ryGdtp~gMVe 260 (640)
=|= |.-+ .++ ...+.|+++|.++=+--+.| .++..- ..|.|--..+.+
T Consensus 113 iINDI~g~--~d~--------------------------~~~~~~a~~~~~vVlmh~~g-~p~~~~~~~~y~dv~~~v~~ 163 (282)
T PRK11613 113 IINDIRSL--SEP--------------------------GALEAAAETGLPVCLMHMQG-NPKTMQEAPKYDDVFAEVNR 163 (282)
T ss_pred EEEECCCC--CCH--------------------------HHHHHHHHcCCCEEEEcCCC-CCCccccCCCcccHHHHHHH
Confidence 321 1211 121 13344788999985554444 232221 235554566778
Q ss_pred HHHHHHHHHHHCCCC--cEEEEEE---eCChhhHHHHHHHHH--HHHHHcCCCcceEEEeec-------CCCCCcceeeh
Q 006566 261 SAFEFARICRKLDFH--NFLFSMK---ASNPVVMVQAYRLLV--AEMYVHGWDYPLHLGVTE-------AGEGEDGRMKS 326 (640)
Q Consensus 261 SAle~~~i~e~~~F~--diviSmK---sSn~~~mV~AyRlL~--~~m~~~g~dyPLHLGVTE-------AG~gedGrIKS 326 (640)
...+.++.|++.|+. +|++--= +.| .-+.+.+|. ++|.+ +.||+=+|+.= .|...+-|+-.
T Consensus 164 ~l~~~i~~a~~~GI~~~~IilDPGiGF~k~---~~~n~~ll~~l~~l~~--lg~Pilvg~SRKsfig~~~~~~~~~r~~~ 238 (282)
T PRK11613 164 YFIEQIARCEAAGIAKEKLLLDPGFGFGKN---LSHNYQLLARLAEFHH--FNLPLLVGMSRKSMIGQLLNVGPSERLSG 238 (282)
T ss_pred HHHHHHHHHHHcCCChhhEEEeCCCCcCCC---HHHHHHHHHHHHHHHh--CCCCEEEEecccHHHHhhcCCChhhhhHH
Confidence 888899999999996 8876421 112 224444443 33333 57999999752 12223345544
Q ss_pred HHHHHHHhhhcCCcEEEe
Q 006566 327 AIGIGTLLQDGLGDTIRV 344 (640)
Q Consensus 327 AiGIG~LL~DGIGDTIRV 344 (640)
+++.-+++...=.+-|||
T Consensus 239 T~a~~~~a~~~ga~iiRv 256 (282)
T PRK11613 239 SLACAVIAAMQGAQIIRV 256 (282)
T ss_pred HHHHHHHHHHCCCCEEEc
Confidence 444444333332355554
No 23
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=96.45 E-value=0.19 Score=62.24 Aligned_cols=171 Identities=20% Similarity=0.272 Sum_probs=126.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCC--HHHHHHHHHHHHHhhcCC--CCcceeeccCCCHHHHHHHhhhc-CceeeCC
Q 006566 115 KDVAGTVEEVMRIADQGADLVRITVQG--KREADACFEIKNSLVQKN--YNIPLVADIHFAPSVALRVAECF-DKIRVNP 189 (640)
Q Consensus 115 ~Dv~atv~Qi~rl~~aGceiVRvtvp~--~~~A~~l~~I~~~L~~~g--~~iPLVADIHF~~~~Al~Aa~~v-~KVRINP 189 (640)
.|.+..+++.+++.++||+|+=|-+.. ..+.+.++.+...|.+.. +++||.-|- ++|.++..|++++ -|==||-
T Consensus 365 ~d~~~a~~~A~~qve~GA~iIDVn~~~~~vd~~eem~rvv~~i~~~~~~~~vPlsIDS-~~~~v~eaaLk~~~G~~IINs 443 (1178)
T TIGR02082 365 EDYDEALDIAKQQVENGAQILDINVDYGMLDGVAAMKRFLNLLASEPDISTVPLMLDS-SEWAVLEAGLKCIQGKCIVNS 443 (1178)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHhccCCCCCeEEEeC-CcHHHHHHHHHhcCCCCEEEe
Confidence 899999999999999999999998654 467778888888877542 489999996 7899999999984 3334776
Q ss_pred CCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhC--CChHHHHHHHHHHHH
Q 006566 190 GNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYG--DSPRGMVESAFEFAR 267 (640)
Q Consensus 190 GN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryG--dtp~gMVeSAle~~~ 267 (640)
=|..+.+ ++|..+...||++|.++=+.. ++++ | .|.+.-++-|.+.++
T Consensus 444 Is~~~g~---------------------~~~~~~~~l~~~yga~vV~m~----~de~-----G~p~t~e~r~~i~~~~~~ 493 (1178)
T TIGR02082 444 ISLKDGE---------------------ERFIETAKLIKEYGAAVVVMA----FDEE-----GQARTADRKIEICKRAYN 493 (1178)
T ss_pred CCCCCCC---------------------ccHHHHHHHHHHhCCCEEEEe----cCCC-----CCCCCHHHHHHHHHHHHH
Confidence 5553321 247788999999999996665 2222 4 366777889999999
Q ss_pred HHHH-CCC--CcEEEE-----EEeCC------hhhHHHHHHHHHHHHHHcCC-CcceEEEeecCCCCCc
Q 006566 268 ICRK-LDF--HNFLFS-----MKASN------PVVMVQAYRLLVAEMYVHGW-DYPLHLGVTEAGEGED 321 (640)
Q Consensus 268 i~e~-~~F--~diviS-----mKsSn------~~~mV~AyRlL~~~m~~~g~-dyPLHLGVTEAG~ged 321 (640)
.|.+ .|| +||+|- +-+.. ....+++.|.+-++ + .+|.-+|+.-=-.|..
T Consensus 494 ~~~~~~Gi~~edIi~DP~i~~v~~g~~e~n~~~~~~le~i~~ik~~-----~pg~~~~~GlSN~SFglp 557 (1178)
T TIGR02082 494 ILTEKVGFPPEDIIFDPNILTIATGIEEHRRYAINFIEAIRWIKEE-----LPDAKISGGVSNVSFSFR 557 (1178)
T ss_pred HHHHHcCCCHHHEEEeCCccccccCchHHHHHHHHHHHHHHHHHHh-----CCCCceEEEecccccCCC
Confidence 9987 999 577763 22222 33556666666666 5 6999999977655553
No 24
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=96.33 E-value=0.12 Score=63.95 Aligned_cols=170 Identities=18% Similarity=0.255 Sum_probs=127.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEec--CCHHHHHHHHHHHHHhhcC--CCCcceeeccCCCHHHHHHHhhhc-CceeeCC
Q 006566 115 KDVAGTVEEVMRIADQGADLVRITV--QGKREADACFEIKNSLVQK--NYNIPLVADIHFAPSVALRVAECF-DKIRVNP 189 (640)
Q Consensus 115 ~Dv~atv~Qi~rl~~aGceiVRvtv--p~~~~A~~l~~I~~~L~~~--g~~iPLVADIHF~~~~Al~Aa~~v-~KVRINP 189 (640)
.|.+..+++.+++.++||+|+=|-+ +...+.+.+..+...+.+. -+++||+-|- ++|.++..|++++ -|==||-
T Consensus 381 ~d~~~al~~A~~qve~GA~iIDVn~g~~~id~~eem~rvv~~i~~~~~~~~vPlsIDS-~~~~ViEaaLk~~~G~~IINS 459 (1229)
T PRK09490 381 EDYDEALDVARQQVENGAQIIDINMDEGMLDSEAAMVRFLNLIASEPDIARVPIMIDS-SKWEVIEAGLKCIQGKGIVNS 459 (1229)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHhhhccCCceEEEeC-CcHHHHHHHHhhcCCCCEEEe
Confidence 8999999999999999999998875 3367777777777776642 3589999996 7899999999984 3333776
Q ss_pred CCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhC--CChHHHHHHHHHHHH
Q 006566 190 GNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYG--DSPRGMVESAFEFAR 267 (640)
Q Consensus 190 GN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryG--dtp~gMVeSAle~~~ 267 (640)
=|..+.+ ++|..++..||++|.++=+.. .+++ | +|.+.=++-|.+.++
T Consensus 460 Is~~~~~---------------------~~~~~~~~l~~kyga~vV~m~----~de~-----G~~~t~e~r~~ia~r~~~ 509 (1229)
T PRK09490 460 ISLKEGE---------------------EKFIEHARLVRRYGAAVVVMA----FDEQ-----GQADTRERKIEICKRAYD 509 (1229)
T ss_pred CCCCCCC---------------------ccHHHHHHHHHHhCCCEEEEe----cCCC-----CCCCCHHHHHHHHHHHHH
Confidence 6664322 248889999999999997666 2222 4 478888999999999
Q ss_pred HHHH-CCC--CcE-----EEEEEeC------ChhhHHHHHHHHHHHHHHcCC-CcceEEEeecCCCCC
Q 006566 268 ICRK-LDF--HNF-----LFSMKAS------NPVVMVQAYRLLVAEMYVHGW-DYPLHLGVTEAGEGE 320 (640)
Q Consensus 268 i~e~-~~F--~di-----viSmKsS------n~~~mV~AyRlL~~~m~~~g~-dyPLHLGVTEAG~ge 320 (640)
++.+ .|| +|| ++.+++. +...++++-|++-+. + .....+||.-=-.|.
T Consensus 510 ~~~~~~Gi~~~dIi~Dplv~~v~t~~ee~~~~~~~~leair~ik~~-----~P~~~~~~GlSNiSFgl 572 (1229)
T PRK09490 510 ILTEEVGFPPEDIIFDPNIFAVATGIEEHNNYAVDFIEATRWIKQN-----LPHAKISGGVSNVSFSF 572 (1229)
T ss_pred HHHHHcCCCHHHEEEcCCcceeecChHHHHHHHHHHHHHHHHHHHH-----CCCCcEEEeeccccccC
Confidence 8865 898 344 4567664 356778888888877 3 233889997754444
No 25
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=96.08 E-value=0.34 Score=49.66 Aligned_cols=159 Identities=13% Similarity=0.155 Sum_probs=102.8
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCCH--HHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhh-cCceee-CC
Q 006566 114 TKDVAGTVEEVMRIADQGADLVRITVQGK--READACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRV-NP 189 (640)
Q Consensus 114 T~Dv~atv~Qi~rl~~aGceiVRvtvp~~--~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~-v~KVRI-NP 189 (640)
...++..++=+..|.++|.+.|-+..|.+ .+.+.++.|++. +.+..+.|=...+++-...|.++ ++.||+ -|
T Consensus 16 ~~~~~~k~~i~~~L~~~Gv~~iE~g~p~~~~~~~e~~~~l~~~----~~~~~~~~~~r~~~~~v~~a~~~g~~~i~i~~~ 91 (259)
T cd07939 16 AFSREEKLAIARALDEAGVDEIEVGIPAMGEEEREAIRAIVAL----GLPARLIVWCRAVKEDIEAALRCGVTAVHISIP 91 (259)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCCCCHHHHHHHHHHHhc----CCCCEEEEeccCCHHHHHHHHhCCcCEEEEEEe
Confidence 45678888888999999999999999976 444566666653 44566666666788888888888 888986 23
Q ss_pred CCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCCChHHHHHHHHHHHHHH
Q 006566 190 GNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARIC 269 (640)
Q Consensus 190 GN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGdtp~gMVeSAle~~~i~ 269 (640)
-+=..-.++ +..-.+.+-+++.+.++.||++|..++++.-..+- .+|+-+ .++++.+
T Consensus 92 ~s~~~~~~~----------~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~---------~~~~~~----~~~~~~~ 148 (259)
T cd07939 92 VSDIHLAHK----------LGKDRAWVLDQLRRLVGRAKDRGLFVSVGAEDASR---------ADPDFL----IEFAEVA 148 (259)
T ss_pred cCHHHHHHH----------hCCCHHHHHHHHHHHHHHHHHCCCeEEEeeccCCC---------CCHHHH----HHHHHHH
Confidence 321111111 11123345566888999999999999887743321 245444 3455555
Q ss_pred HHCCCCcEEEEEEeCChhhHHHHHHHHHHHHH
Q 006566 270 RKLDFHNFLFSMKASNPVVMVQAYRLLVAEMY 301 (640)
Q Consensus 270 e~~~F~diviSmKsSn~~~mV~AyRlL~~~m~ 301 (640)
.+.|-+ .|+++-|.=...=+.++.++..+.
T Consensus 149 ~~~G~~--~i~l~DT~G~~~P~~v~~lv~~l~ 178 (259)
T cd07939 149 QEAGAD--RLRFADTVGILDPFTTYELIRRLR 178 (259)
T ss_pred HHCCCC--EEEeCCCCCCCCHHHHHHHHHHHH
Confidence 666765 467777654444445555555543
No 26
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=96.07 E-value=1.9 Score=44.07 Aligned_cols=157 Identities=11% Similarity=0.130 Sum_probs=101.9
Q ss_pred CCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHH--------HHHHHHHHHHHhhcCCCCcceee------
Q 006566 101 EHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKR--------EADACFEIKNSLVQKNYNIPLVA------ 166 (640)
Q Consensus 101 ~~PI~VQSMt~t~T~Dv~atv~Qi~rl~~aGceiVRvtvp~~~--------~A~~l~~I~~~L~~~g~~iPLVA------ 166 (640)
.||+-||+-.-.+-...+.++ ..++++|-+-|=+.+.+.. ..+.+.++++.|.+.|..+.-++
T Consensus 2 ~~~~~~~~~~~~~~~~~~e~l---~~~~~~G~~~VEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~~~ 78 (279)
T TIGR00542 2 KHPLGIYEKALPKGECWLERL---QLAKTCGFDFVEMSVDETDDRLSRLDWSREQRLALVNAIIETGVRIPSMCLSAHRR 78 (279)
T ss_pred CcccceehhhCCCCCCHHHHH---HHHHHcCCCEEEEecCCccchhhccCCCHHHHHHHHHHHHHcCCCceeeecCCCcc
Confidence 367777777766555555544 4556889999988765532 25678889999999999887554
Q ss_pred -cc-CCCHH-----------HHHHHhhh-cCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCC
Q 006566 167 -DI-HFAPS-----------VALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGR 232 (640)
Q Consensus 167 -DI-HF~~~-----------~Al~Aa~~-v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~ 232 (640)
.+ +.++. ....|.+. +..|++.++.+.. ++..++.++++.+.++++++.|+++|+
T Consensus 79 ~~l~~~~~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~-----------~~~~~~~~~~~~~~l~~l~~~A~~~Gv 147 (279)
T TIGR00542 79 FPLGSKDKAVRQQGLEIMEKAIQLARDLGIRTIQLAGYDVYY-----------EEHDEETRRRFREGLKEAVELAARAQV 147 (279)
T ss_pred CcCCCcCHHHHHHHHHHHHHHHHHHHHhCCCEEEecCccccc-----------CcCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 22 23452 12234444 8889986543321 112355678888999999999999998
Q ss_pred eEEEeeCCCCCcHhHHHHhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEEeCCh
Q 006566 233 AVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNP 286 (640)
Q Consensus 233 aIRIGvNhGSLs~ril~ryGdtp~gMVeSAle~~~i~e~~~F~diviSmKsSn~ 286 (640)
.|-+= ||++ . .+.+.-+.+++++..|=.++.+-+-..|.
T Consensus 148 ~l~lE-~~~~-------~-------~~~t~~~~~~li~~v~~~~v~~~~D~~h~ 186 (279)
T TIGR00542 148 TLAVE-IMDT-------P-------FMSSISKWLKWDHYLNSPWFTLYPDIGNL 186 (279)
T ss_pred EEEEe-eCCC-------c-------hhcCHHHHHHHHHHcCCCceEEEeCcChh
Confidence 66332 4421 1 23333455667788887888888776663
No 27
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=95.98 E-value=0.17 Score=50.66 Aligned_cols=169 Identities=18% Similarity=0.297 Sum_probs=109.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCC----------HHHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhhcCc
Q 006566 115 KDVAGTVEEVMRIADQGADLVRITVQG----------KREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDK 184 (640)
Q Consensus 115 ~Dv~atv~Qi~rl~~aGceiVRvtvp~----------~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~v~K 184 (640)
.+.+..+++++++.++||+++=|-+.+ .+|.+-+..+.+.+++...++||.=|- |+|.++.+|+++-.+
T Consensus 16 ~~~~~a~~~a~~~~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~plSIDT-~~~~v~~~aL~~g~~ 94 (210)
T PF00809_consen 16 FSEDEAVKRAREQVEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDVPLSIDT-FNPEVAEAALKAGAD 94 (210)
T ss_dssp HHHHHHHHHHHHHHHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTSEEEEEE-SSHHHHHHHHHHTSS
T ss_pred cCHHHHHHHHHHHHHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCeEEEEEC-CCHHHHHHHHHcCcc
Confidence 345778999999999999999997655 456666666666666656789999996 899999999999334
Q ss_pred eeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCC---CcHhHHHHhC-CChHHHHH
Q 006566 185 IRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGS---LSDRIMSYYG-DSPRGMVE 260 (640)
Q Consensus 185 VRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGS---Ls~ril~ryG-dtp~gMVe 260 (640)
+=+|-.++-+ ..+++..|+++|.++=+=.+.|+ .++. ..|. +-...+++
T Consensus 95 ~ind~~~~~~-------------------------~~~~~~l~a~~~~~vV~m~~~~~~~~~~~~--~~~~~~~~~~i~~ 147 (210)
T PF00809_consen 95 IINDISGFED-------------------------DPEMLPLAAEYGAPVVLMHSDGNPKGMPET--ADYRLDIAEEIIE 147 (210)
T ss_dssp EEEETTTTSS-------------------------STTHHHHHHHHTSEEEEESESSETTTTTSS--HHHSHSHHHHHHH
T ss_pred eEEecccccc-------------------------cchhhhhhhcCCCEEEEEeccccccccccc--chhhhhHHHHHHH
Confidence 4456555542 12367888999998744333321 2222 1222 34567888
Q ss_pred HHHHHHHHHHHCCC--CcEEEEE---EeCChhhHHHHHHHHHHHHHHcCCCcceEEEe
Q 006566 261 SAFEFARICRKLDF--HNFLFSM---KASNPVVMVQAYRLLVAEMYVHGWDYPLHLGV 313 (640)
Q Consensus 261 SAle~~~i~e~~~F--~diviSm---KsSn~~~mV~AyRlL~~~m~~~g~dyPLHLGV 313 (640)
-+.+.++.|++.|. ++|+|-- =+.++..-.+..|.+-. +.+. +.+|+=+|+
T Consensus 148 ~~~~~i~~l~~~Gi~~~~Ii~DPgigf~~~~~~~~~~l~~i~~-~~~~-~~~p~l~~~ 203 (210)
T PF00809_consen 148 FLEERIEALEKAGIPRERIILDPGIGFGKDPEQNLELLRNIEE-LKEL-FGYPILVGG 203 (210)
T ss_dssp HHHHHHHHHHHTT--GGGEEEETTTTSSTTHHHHHHHHHTHHH-HHTT-SSSEBEEEE
T ss_pred HHHHHHHHHHHcCCCHHHEeeccccCcCCCHHHHHHHHHHHHH-HHHh-CCCCEEEEE
Confidence 88899999999999 8888741 02332223333333322 2222 468877765
No 28
>PRK13753 dihydropteroate synthase; Provisional
Probab=95.88 E-value=0.9 Score=48.23 Aligned_cols=198 Identities=13% Similarity=0.127 Sum_probs=119.9
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEec----CCH------HHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhh-cC
Q 006566 115 KDVAGTVEEVMRIADQGADLVRITV----QGK------READACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FD 183 (640)
Q Consensus 115 ~Dv~atv~Qi~rl~~aGceiVRvtv----p~~------~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~-v~ 183 (640)
.|.+..++++.++.+.|+|||=|=. |+. +|.+-+..+.+.|++. .+|+--|- |+|++|.+|+++ ++
T Consensus 22 ~~~d~a~~~a~~m~~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~~--~~~ISIDT-~~~~va~~al~aGad 98 (279)
T PRK13753 22 LDPAGAVTAAIEMLRVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQ--MHRVSIDS-FQPETQRYALKRGVG 98 (279)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHhC--CCcEEEEC-CCHHHHHHHHHcCCC
Confidence 5899999999999999999999864 443 3665555666667765 47887785 899999999998 76
Q ss_pred cee-eCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCC--CcHhH-HHHhCCChHHHH
Q 006566 184 KIR-VNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGS--LSDRI-MSYYGDSPRGMV 259 (640)
Q Consensus 184 KVR-INPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGS--Ls~ri-l~ryGdtp~gMV 259 (640)
=|= |+-+| ++ .+.+.|.++++++=+=-+.|. -+.+. ...|.|--..+.
T Consensus 99 iINDVsg~~--d~--------------------------~~~~vva~~~~~vVlmH~~~~~~~~~~~~~~~~~dv~~ev~ 150 (279)
T PRK13753 99 YLNDIQGFP--DP--------------------------ALYPDIAEADCRLVVMHSAQRDGIATRTGHLRPEDALDEIV 150 (279)
T ss_pred EEEeCCCCC--ch--------------------------HHHHHHHHcCCCEEEEecCCCCCCCCcccCCCcchHHHHHH
Confidence 432 23222 21 245667778888855444331 11211 122433223455
Q ss_pred HHHHHHHHHHHHCCC--CcEEEE-----EEeCChhhHHHHHHHHHHHHHHcCCCcceEEEeec------C-CCCCcceee
Q 006566 260 ESAFEFARICRKLDF--HNFLFS-----MKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTE------A-GEGEDGRMK 325 (640)
Q Consensus 260 eSAle~~~i~e~~~F--~diviS-----mKsSn~~~mV~AyRlL~~~m~~~g~dyPLHLGVTE------A-G~gedGrIK 325 (640)
..-.+-++.|++.|- .+|++- -|+.|+....+-.|.|-+ +. ..+.||+=+|+.= . |...+-|.-
T Consensus 151 ~~l~~~i~~~~~~Gi~~~~IilDPGiGF~k~k~~~~n~~ll~~l~~-l~-~~~g~PvLvg~SRKsfig~~~~~~~~~R~~ 228 (279)
T PRK13753 151 RFFEARVSALRRSGVAADRLILDPGMGFFLSPAPETSLHVLSNLQK-LK-SALGLPLLVSVSRKSFLGATVGLPVKDLGP 228 (279)
T ss_pred HHHHHHHHHHHHcCCChhhEEEeCCCCCCCCCChHHHHHHHHhHHH-HH-HhCCCceEEEccHhHHHHHHcCCChhhhhH
Confidence 555566888999998 577764 354454333333333322 21 1267999999631 1 222345555
Q ss_pred hHHHHHHHhhhcCCcEEEee
Q 006566 326 SAIGIGTLLQDGLGDTIRVS 345 (640)
Q Consensus 326 SAiGIG~LL~DGIGDTIRVS 345 (640)
.++..-+++...=.|-|||-
T Consensus 229 ~T~a~~~~a~~~Ga~ivRvH 248 (279)
T PRK13753 229 ASLAAELHAIGNGADYVRTH 248 (279)
T ss_pred hHHHHHHHHHHcCCCEEEeC
Confidence 56666555555555677754
No 29
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=95.63 E-value=0.24 Score=49.44 Aligned_cols=167 Identities=17% Similarity=0.165 Sum_probs=101.9
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEe--cCCHHHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHH----Hhhh-cCceee
Q 006566 115 KDVAGTVEEVMRIADQGADLVRIT--VQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALR----VAEC-FDKIRV 187 (640)
Q Consensus 115 ~Dv~atv~Qi~rl~~aGceiVRvt--vp~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~----Aa~~-v~KVRI 187 (640)
..++.-++=+..|.++|-++|-+. .-+.++.+.++.+.+.+.. .++.+-..-+.+.-.. +.+. ++-|||
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~v~~~~~~~~~----~~~~~~~~~~~~~i~~~~~~~~~~g~~~i~i 86 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVGFPFASEDDFEQVRRLREALPN----ARLQALCRANEEDIERAVEAAKEAGIDIIRI 86 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEEHCTSSHHHHHHHHHHHHHHHS----SEEEEEEESCHHHHHHHHHHHHHTTSSEEEE
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcccccCHHHHHHhhhhhhhhcc----cccceeeeehHHHHHHHHHhhHhccCCEEEe
Confidence 445666677778999999999999 4567889999999987665 3333333333333333 3335 888884
Q ss_pred -CCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCCChHHHHHHHHHHH
Q 006566 188 -NPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFA 266 (640)
Q Consensus 188 -NPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGdtp~gMVeSAle~~ 266 (640)
.|.|=...+++ +....+.+-+++.+.++.||++|..++++.-+.|- | +| +-.++++
T Consensus 87 ~~~~s~~~~~~~----------~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~-------~--~~----~~~~~~~ 143 (237)
T PF00682_consen 87 FISVSDLHIRKN----------LNKSREEALERIEEAVKYAKELGYEVAFGCEDASR-------T--DP----EELLELA 143 (237)
T ss_dssp EEETSHHHHHHH----------TCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGG-------S--SH----HHHHHHH
T ss_pred cCcccHHHHHHh----------hcCCHHHHHHHHHHHHHHHHhcCCceEeCcccccc-------c--cH----HHHHHHH
Confidence 33332221211 12233445556788999999999999999865542 1 33 4455677
Q ss_pred HHHHHCCCCcEEEEEEeCChhhHHHHHHHHHHHHHHcCCCcceE
Q 006566 267 RICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLH 310 (640)
Q Consensus 267 ~i~e~~~F~diviSmKsSn~~~mV~AyRlL~~~m~~~g~dyPLH 310 (640)
+.+.+.|.+- |+++-|.=...=..++.+++.+.++--+-||+
T Consensus 144 ~~~~~~g~~~--i~l~Dt~G~~~P~~v~~lv~~~~~~~~~~~l~ 185 (237)
T PF00682_consen 144 EALAEAGADI--IYLADTVGIMTPEDVAELVRALREALPDIPLG 185 (237)
T ss_dssp HHHHHHT-SE--EEEEETTS-S-HHHHHHHHHHHHHHSTTSEEE
T ss_pred HHHHHcCCeE--EEeeCccCCcCHHHHHHHHHHHHHhccCCeEE
Confidence 7777778765 57887765555555556666554443335553
No 30
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=95.59 E-value=0.82 Score=49.59 Aligned_cols=146 Identities=20% Similarity=0.290 Sum_probs=102.4
Q ss_pred CceeEEEceeecCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEE----------ecCC--HHHHHHHHHHHHH
Q 006566 87 KTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRI----------TVQG--KREADACFEIKNS 154 (640)
Q Consensus 87 ~Tr~V~VG~v~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~rl~~aGceiVRv----------tvp~--~~~A~~l~~I~~~ 154 (640)
....|.+|++.|||++++.|-= .+.-.+-+..++-.+++.++||+++|. +.++ .+.-+-|.+.+++
T Consensus 78 ~~t~v~~~~~~ig~~~~~~IAG--PCsiEs~e~~~~~A~~lk~~ga~~~r~~~fKpRTsp~sf~G~g~~gL~~L~~~~~~ 155 (335)
T PRK08673 78 EPTVVKVGDVEIGGGKPVVIAG--PCSVESEEQILEIARAVKEAGAQILRGGAFKPRTSPYSFQGLGEEGLKLLAEAREE 155 (335)
T ss_pred CCCEEEECCEEECCCceEEEEe--cCccCCHHHHHHHHHHHHHhchhhccCcEecCCCCCcccccccHHHHHHHHHHHHH
Confidence 3456899999999988777644 445567899999999999999999996 3344 4445555555553
Q ss_pred hhcCCCCcceeeccCCCHHHHHHHhhhcCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeE
Q 006566 155 LVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAV 234 (640)
Q Consensus 155 L~~~g~~iPLVADIHF~~~~Al~Aa~~v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aI 234 (640)
..+|+++++|- +.-+..+.+++|-+-|--+|+-+ .++++.+-+.|.|+
T Consensus 156 -----~Gl~v~tev~d-~~~~~~l~~~vd~lqIgAr~~~N--------------------------~~LL~~va~~~kPV 203 (335)
T PRK08673 156 -----TGLPIVTEVMD-PRDVELVAEYVDILQIGARNMQN--------------------------FDLLKEVGKTNKPV 203 (335)
T ss_pred -----cCCcEEEeeCC-HHHHHHHHHhCCeEEECcccccC--------------------------HHHHHHHHcCCCcE
Confidence 88999999975 45555556889999999999976 35788888899998
Q ss_pred EEeeCCCCCcHhHHHHhCCChHHHHHHHHHHHHHHHHCCCCcEEEEE
Q 006566 235 RIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSM 281 (640)
Q Consensus 235 RIGvNhGSLs~ril~ryGdtp~gMVeSAle~~~i~e~~~F~diviSm 281 (640)
..-.|- ..|++.|.. |.|+ +...|=+++++--
T Consensus 204 --iLk~G~---------~~ti~E~l~-A~e~---i~~~GN~~viL~e 235 (335)
T PRK08673 204 --LLKRGM---------SATIEEWLM-AAEY---ILAEGNPNVILCE 235 (335)
T ss_pred --EEeCCC---------CCCHHHHHH-HHHH---HHHcCCCeEEEEE
Confidence 332220 014444443 3333 4677778877743
No 31
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=95.48 E-value=0.81 Score=47.65 Aligned_cols=157 Identities=17% Similarity=0.172 Sum_probs=98.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecC--CHHHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhh-cCceee-CCC
Q 006566 115 KDVAGTVEEVMRIADQGADLVRITVQ--GKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRV-NPG 190 (640)
Q Consensus 115 ~Dv~atv~Qi~rl~~aGceiVRvtvp--~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~-v~KVRI-NPG 190 (640)
..++.-++=+..|.++|.+.|-+..| +..++++++.+.+. +....+.+=.=-+++-...|+++ ++.||| -|.
T Consensus 19 ~s~~~k~~i~~~L~~~Gv~~IEvG~P~~~~~~~~~~~~l~~~----~~~~~v~~~~r~~~~di~~a~~~g~~~i~i~~~~ 94 (262)
T cd07948 19 FDTEDKIEIAKALDAFGVDYIELTSPAASPQSRADCEAIAKL----GLKAKILTHIRCHMDDARIAVETGVDGVDLVFGT 94 (262)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHhC----CCCCcEEEEecCCHHHHHHHHHcCcCEEEEEEec
Confidence 56788888899999999999999765 45677788888653 33344444344466667788888 999997 332
Q ss_pred CCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCCChHHHHHHHHHHHHHHH
Q 006566 191 NFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICR 270 (640)
Q Consensus 191 N~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGdtp~gMVeSAle~~~i~e 270 (640)
+=...++++ ....+..-+++.+.++.||++|..++++.-..+ + +| .+-..++++.+.
T Consensus 95 S~~~~~~~~----------~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~---------r-~~---~~~l~~~~~~~~ 151 (262)
T cd07948 95 SPFLREASH----------GKSITEIIESAVEVIEFVKSKGIEVRFSSEDSF---------R-SD---LVDLLRVYRAVD 151 (262)
T ss_pred CHHHHHHHh----------CCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeC---------C-CC---HHHHHHHHHHHH
Confidence 211111110 111234456688899999999999999873322 2 22 223446777777
Q ss_pred HCCCCcEEEEEEeCChhhHHHHHHHHHHHH
Q 006566 271 KLDFHNFLFSMKASNPVVMVQAYRLLVAEM 300 (640)
Q Consensus 271 ~~~F~diviSmKsSn~~~mV~AyRlL~~~m 300 (640)
+.|-+ .|+++-+.=..+=+..+.++..+
T Consensus 152 ~~g~~--~i~l~Dt~G~~~P~~v~~~~~~~ 179 (262)
T cd07948 152 KLGVN--RVGIADTVGIATPRQVYELVRTL 179 (262)
T ss_pred HcCCC--EEEECCcCCCCCHHHHHHHHHHH
Confidence 77876 46777765333333333344343
No 32
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=95.41 E-value=0.032 Score=60.65 Aligned_cols=90 Identities=20% Similarity=0.220 Sum_probs=66.3
Q ss_pred CceEEEeecCCCCCCCchhHHHHHHHHHHHHCCCCCCEEEEeccCCCCCccchHHHHHHhhhhhhhccccceeeecCCCC
Q 006566 538 DATMILHDLPFNEDKIGRVQAARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGALLVDGLGDGLLLEAPGQ 617 (640)
Q Consensus 538 ~~~v~il~~~~~~~~~~~v~~~R~l~~~L~~~g~~~PVi~~~~y~~~~~~~~~~l~aa~d~GaLL~DGlGDGi~l~~~~~ 617 (640)
+.+++.++ +|+-..-+.++|.|... .++|+=+- .++.-...+=.+++|+-+|+||.||+||-|=+.-+..
T Consensus 175 ~~iviS~K---sS~v~~~i~ayrlla~~-----~dyPLHlG--vTEAG~~~~G~iKSa~gig~LL~~GIGDTiRVSLt~~ 244 (360)
T PRK00366 175 DDIKISVK---ASDVQDLIAAYRLLAKR-----CDYPLHLG--VTEAGMGFKGTVKSAAGLGALLQEGIGDTIRVSLTAD 244 (360)
T ss_pred CcEEEEEE---cCCHHHHHHHHHHHHhc-----CCCCceec--ccCCCCCCCceehhHHHHHHHHHhcCCCeEEEeCCCC
Confidence 67888988 66666777777766543 46775443 2333234557899999999999999999999877655
Q ss_pred Chhhhhhhhhhhhhhcccccc
Q 006566 618 DFDFLRDTSFNLLQGVCLMSI 638 (640)
Q Consensus 618 ~~~~~~~~aF~ILQaaR~r~~ 638 (640)
+.+. -.+++.|||+.++|..
T Consensus 245 P~~E-V~va~~IL~slglr~~ 264 (360)
T PRK00366 245 PVEE-VKVGQEILQSLGLRSR 264 (360)
T ss_pred CHHH-HHHHHHHHHHcCCccC
Confidence 4444 3689999999999863
No 33
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=95.39 E-value=1.1 Score=46.70 Aligned_cols=144 Identities=21% Similarity=0.272 Sum_probs=102.7
Q ss_pred ceeEEEceeecCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEE------ec------CCHHHHHHHHHHHHHh
Q 006566 88 TRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRI------TV------QGKREADACFEIKNSL 155 (640)
Q Consensus 88 Tr~V~VG~v~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~rl~~aGceiVRv------tv------p~~~~A~~l~~I~~~L 155 (640)
..+|.+|++.||+++++.|-= ...-.|.+.+.+..++|.++|..+.|- |. ++.+.-+.|++++++
T Consensus 11 ~s~i~~~~~~~g~~~~~~IAG--pc~ie~~~~~~~~A~~lk~~~~k~~r~~~~KpRtsp~s~~g~g~~gl~~l~~~~~~- 87 (260)
T TIGR01361 11 KTVVDVGGVKIGEGSPIVIAG--PCSVESEEQIMETARFVKEAGAKILRGGAFKPRTSPYSFQGLGEEGLKLLRRAADE- 87 (260)
T ss_pred CCEEEECCEEEcCCcEEEEEe--CCccCCHHHHHHHHHHHHHHHHHhccCceecCCCCCccccccHHHHHHHHHHHHHH-
Confidence 456999999999999877654 445567889999999999999999884 12 245555666666653
Q ss_pred hcCCCCcceeeccCCCHHHHHHHhhhcCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEE
Q 006566 156 VQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVR 235 (640)
Q Consensus 156 ~~~g~~iPLVADIHF~~~~Al~Aa~~v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIR 235 (640)
..+|.++|+|=...+.+ +.+.++-+-|--+++.+ .+|++.+.+.|.||=
T Consensus 88 ----~Gl~~~t~~~d~~~~~~-l~~~~d~lkI~s~~~~n--------------------------~~LL~~~a~~gkPVi 136 (260)
T TIGR01361 88 ----HGLPVVTEVMDPRDVEI-VAEYADILQIGARNMQN--------------------------FELLKEVGKQGKPVL 136 (260)
T ss_pred ----hCCCEEEeeCChhhHHH-HHhhCCEEEECcccccC--------------------------HHHHHHHhcCCCcEE
Confidence 88999999986555554 45779999998888866 358888999999994
Q ss_pred EeeCCCCCcHhHHHHhCCChHHHHHHHHHHHHHHHHCCCCcEEEE
Q 006566 236 IGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFS 280 (640)
Q Consensus 236 IGvNhGSLs~ril~ryGdtp~gMVeSAle~~~i~e~~~F~diviS 280 (640)
+=+.-. .+++. ++.|.| .+++.|-+++++-
T Consensus 137 lk~G~~-----------~t~~e-~~~Ave---~i~~~Gn~~i~l~ 166 (260)
T TIGR01361 137 LKRGMG-----------NTIEE-WLYAAE---YILSSGNGNVILC 166 (260)
T ss_pred EeCCCC-----------CCHHH-HHHHHH---HHHHcCCCcEEEE
Confidence 333211 13433 344444 4567788888883
No 34
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=95.35 E-value=1.3 Score=45.66 Aligned_cols=196 Identities=20% Similarity=0.244 Sum_probs=115.2
Q ss_pred eEEEceeecCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHH---HHHHHHHHHHhhcCCCCcceee
Q 006566 90 TVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKRE---ADACFEIKNSLVQKNYNIPLVA 166 (640)
Q Consensus 90 ~V~VG~v~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~---A~~l~~I~~~L~~~g~~iPLVA 166 (640)
.|+|+++.+|++.|..+=+-+. .+.+...+|++++...|||+|=+-+.-.++ .+.+..+...|++.-.++|+++
T Consensus 3 ~~~~~~~~~~~~~~~i~v~l~~---~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~~~~~~~~l~~~~~~~PiI~ 79 (253)
T PRK02412 3 TVTVKNLVIGEGAPKIIVPIMG---KTLEEVLAEALAISKYDADIIEWRADFLEKISDVESVLAAAPAIREKFAGKPLLF 79 (253)
T ss_pred eeEEeceEeCCCCcEEEEEeCC---CCHHHHHHHHHHHhhcCCCEEEEEechhhccCCHHHHHHHHHHHHHhcCCCcEEE
Confidence 5789999999999988777653 457888899999999999998666544432 3445555555555434689998
Q ss_pred ccCCCH-------HHH--HHHhhhcCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEe
Q 006566 167 DIHFAP-------SVA--LRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIG 237 (640)
Q Consensus 167 DIHF~~-------~~A--l~Aa~~v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIG 237 (640)
-+=-.. .-. .+..+. -+|.+.-.|.| +|++ .=.+.+..+++.+++.|+.+ |+
T Consensus 80 T~R~~~eGG~~~~~~~~~~~ll~~--~~~~~~~d~vD-------iEl~---------~~~~~~~~l~~~~~~~~~kv-I~ 140 (253)
T PRK02412 80 TFRTAKEGGEIALSDEEYLALIKA--VIKSGLPDYID-------VELF---------SGKDVVKEMVAFAHEHGVKV-VL 140 (253)
T ss_pred EECChhhCCCCCCCHHHHHHHHHH--HHhcCCCCEEE-------Eecc---------CChHHHHHHHHHHHHcCCEE-EE
Confidence 543221 111 011111 12333113333 3321 11345788999999988875 56
Q ss_pred eCCCCCcHhHHHHhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEEeCChhhHHHHHHHHHHHHHHcCCCcce-EEEeecC
Q 006566 238 TNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPL-HLGVTEA 316 (640)
Q Consensus 238 vNhGSLs~ril~ryGdtp~gMVeSAle~~~i~e~~~F~diviSmKsSn~~~mV~AyRlL~~~m~~~g~dyPL-HLGVTEA 316 (640)
-.| .|..||.. +.-.+.++-+++.|.+=+.|-..+.+......-.+ +..++.+.+.+.|+ .++
T Consensus 141 S~H---------~f~~tP~~--~~l~~~~~~~~~~gaDivKia~~a~~~~D~~~ll~-~~~~~~~~~~~~P~i~~~---- 204 (253)
T PRK02412 141 SYH---------DFEKTPPK--EEIVERLRKMESLGADIVKIAVMPQSEQDVLTLLN-ATREMKELYADQPLITMS---- 204 (253)
T ss_pred eeC---------CCCCCcCH--HHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHHH-HHHHHHhcCCCCCEEEEe----
Confidence 555 12335511 12346777788999888888888877554333222 22333344567887 344
Q ss_pred CCCCccee
Q 006566 317 GEGEDGRM 324 (640)
Q Consensus 317 G~gedGrI 324 (640)
+|+-|++
T Consensus 205 -MG~~G~~ 211 (253)
T PRK02412 205 -MGKLGRI 211 (253)
T ss_pred -CCCCchH
Confidence 4555544
No 35
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=95.25 E-value=1.7 Score=45.24 Aligned_cols=166 Identities=20% Similarity=0.229 Sum_probs=104.9
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecC-C-HHHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhhcCc-eeeCCCC
Q 006566 115 KDVAGTVEEVMRIADQGADLVRITVQ-G-KREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDK-IRVNPGN 191 (640)
Q Consensus 115 ~Dv~atv~Qi~rl~~aGceiVRvtvp-~-~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~v~K-VRINPGN 191 (640)
.|.+..+++++++.++||+|+=|-+. + ..+.+.++.+...+++ -+++|+.-|. |+|.++..|++++.. -=||-=+
T Consensus 23 ~~~d~~~~~A~~~~~~GAdiIDIG~~~~~~~~~ee~~r~v~~i~~-~~~~piSIDT-~~~~v~e~aL~~~~G~~iINsIs 100 (252)
T cd00740 23 EDYDEALDVARQQVEGGAQILDLNVDYGGLDGVSAMKWLLNLLAT-EPTVPLMLDS-TNWEVIEAGLKCCQGKCVVNSIN 100 (252)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHH-hcCCcEEeeC-CcHHHHHHHHhhCCCCcEEEeCC
Confidence 78899999999999999999988762 2 2345566666555553 3489999997 699999999997532 2255433
Q ss_pred CCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCC-CCcHhHHHHhCCChHHHHHHHHHHHHHHH
Q 006566 192 FADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHG-SLSDRIMSYYGDSPRGMVESAFEFARICR 270 (640)
Q Consensus 192 ~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhG-SLs~ril~ryGdtp~gMVeSAle~~~i~e 270 (640)
-... ++++..+++.|+++|.++=+=.+.. ..+ .|++.-.+.+.+.++.+.
T Consensus 101 ~~~~---------------------~e~~~~~~~~~~~~~~~vV~m~~~~~g~p--------~t~~~~~~~~~~~~~~~~ 151 (252)
T cd00740 101 LEDG---------------------EERFLKVARLAKEHGAAVVVLAFDEQGQA--------KTRDKKVEIAERAYEALT 151 (252)
T ss_pred CCCC---------------------ccccHHHHHHHHHhCCCEEEeccCCCCCC--------CCHHHHHHHHHHHHHHHH
Confidence 2210 1235667788999998884433211 011 144555667777777665
Q ss_pred HC-CC--CcEEE-----EEEeCChh------hHHHHHHHHHHHHHHcCCCcceEEEeec
Q 006566 271 KL-DF--HNFLF-----SMKASNPV------VMVQAYRLLVAEMYVHGWDYPLHLGVTE 315 (640)
Q Consensus 271 ~~-~F--~divi-----SmKsSn~~------~mV~AyRlL~~~m~~~g~dyPLHLGVTE 315 (640)
+. |. ++|++ -.|+.+.. ..++.++.+-++ ...+|+-+|+.-
T Consensus 152 ~~~gi~~~~IiiDPgig~~~~~~~e~~~~~l~~l~~~~~~~~~----~p~~pil~G~Sn 206 (252)
T cd00740 152 EFVGFPPEDIIFDPLILPIATGIEEHRPYALETIDAIRMIKER----LPAVKISLGVSN 206 (252)
T ss_pred HHcCCCHHHEEEeCCcccccCccHHHHHHHHHHHHHHHHHHhh----CCCCCEEEEecc
Confidence 44 43 45555 34643322 234555555444 236999999854
No 36
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=95.08 E-value=2.8 Score=43.93 Aligned_cols=196 Identities=13% Similarity=0.193 Sum_probs=124.4
Q ss_pred eeEEEceeecCCCCce----EEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEec------------CCHHHHHHHHHHH
Q 006566 89 RTVMVGNVAIGSEHPI----RVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITV------------QGKREADACFEIK 152 (640)
Q Consensus 89 r~V~VG~v~IGG~~PI----~VQSMt~t~T~Dv~atv~Qi~rl~~aGceiVRvtv------------p~~~~A~~l~~I~ 152 (640)
..|.+|++.+||.+-| +|+|- +-+.+-.+.+.++|..++|=.+ ++.+.-+.|.+.+
T Consensus 4 ~~~~~~~~~~~~~~~iaGPC~vEs~--------e~~~~~a~~~~~~g~~~~r~g~~kpRts~~sf~G~G~~gl~~L~~~~ 75 (250)
T PRK13397 4 IMSDFQNKTCSKNNFIVGPCSIESY--------DHIRLAASSAKKLGYNYFRGGAYKPRTSAASFQGLGLQGIRYLHEVC 75 (250)
T ss_pred ceEEecCccCCCCcEEeccCccCCH--------HHHHHHHHHHHHcCCCEEEecccCCCCCCcccCCCCHHHHHHHHHHH
Confidence 3688899988887544 44443 4455555668999999999653 4556566666666
Q ss_pred HHhhcCCCCcceeeccCCCHHHHHHHhhhcCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCC
Q 006566 153 NSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGR 232 (640)
Q Consensus 153 ~~L~~~g~~iPLVADIHF~~~~Al~Aa~~v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~ 232 (640)
++ ..+|.++|+|=...+. .+++.+|-+-|--+|..+ .+|++.+-+.|.
T Consensus 76 ~~-----~Gl~~~Tev~d~~~v~-~~~e~vdilqIgs~~~~n--------------------------~~LL~~va~tgk 123 (250)
T PRK13397 76 QE-----FGLLSVSEIMSERQLE-EAYDYLDVIQVGARNMQN--------------------------FEFLKTLSHIDK 123 (250)
T ss_pred HH-----cCCCEEEeeCCHHHHH-HHHhcCCEEEECcccccC--------------------------HHHHHHHHccCC
Confidence 64 8899999998655554 456689999999999876 357888888899
Q ss_pred eEEEeeCCCCCcHhHHHHhCCChHHHHHHHHHHHHHHHHCCCCcEEEEE--------EeCChhhHHHHHHHHHHHHHHcC
Q 006566 233 AVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSM--------KASNPVVMVQAYRLLVAEMYVHG 304 (640)
Q Consensus 233 aIRIGvNhGSLs~ril~ryGdtp~gMVeSAle~~~i~e~~~F~diviSm--------KsSn~~~mV~AyRlL~~~m~~~g 304 (640)
||=|=. |- ..|++.|. .|.|++ .+.|-+|+++-= ...| .+.+.+.-.+-++
T Consensus 124 PVilk~--G~---------~~t~~e~~-~A~e~i---~~~Gn~~i~L~eRg~~~Y~~~~~n-~~dl~ai~~lk~~----- 182 (250)
T PRK13397 124 PILFKR--GL---------MATIEEYL-GALSYL---QDTGKSNIILCERGVRGYDVETRN-MLDIMAVPIIQQK----- 182 (250)
T ss_pred eEEEeC--CC---------CCCHHHHH-HHHHHH---HHcCCCeEEEEccccCCCCCcccc-ccCHHHHHHHHHH-----
Confidence 993322 20 13554444 444443 466666766642 1111 2223344444444
Q ss_pred CCcceEEEeecCCCCCc---ceeehHHHHHHHhhhcCCcEEEeecCCCCch
Q 006566 305 WDYPLHLGVTEAGEGED---GRMKSAIGIGTLLQDGLGDTIRVSLTEPPEK 352 (640)
Q Consensus 305 ~dyPLHLGVTEAG~ged---GrIKSAiGIG~LL~DGIGDTIRVSLTedP~~ 352 (640)
+++|+-.|.|-++...+ ..-+.|+..|+ |+|.+----+|.+
T Consensus 183 ~~lPVivd~SHs~G~r~~v~~~a~AAvA~GA-------dGl~IE~H~~P~~ 226 (250)
T PRK13397 183 TDLPIIVDVSHSTGRRDLLLPAAKIAKAVGA-------NGIMMEVHPDPDH 226 (250)
T ss_pred hCCCeEECCCCCCcccchHHHHHHHHHHhCC-------CEEEEEecCCccc
Confidence 67899899886643323 33455555554 7777766667764
No 37
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=95.08 E-value=0.05 Score=58.88 Aligned_cols=90 Identities=19% Similarity=0.244 Sum_probs=64.5
Q ss_pred CceEEEeecCCCCCCCchhHHHHHHHHHHHHCCCCCCEEEEeccCCCCCccchHHHHHHhhhhhhhccccceeeecCCCC
Q 006566 538 DATMILHDLPFNEDKIGRVQAARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGALLVDGLGDGLLLEAPGQ 617 (640)
Q Consensus 538 ~~~v~il~~~~~~~~~~~v~~~R~l~~~L~~~g~~~PVi~~~~y~~~~~~~~~~l~aa~d~GaLL~DGlGDGi~l~~~~~ 617 (640)
+.+++.++ +|+-..-+.++|.|... .++|+=+- .++.-...+=.+++|+-+|+||.||+||=|=+.-+..
T Consensus 166 ~diviS~K---sSdv~~~i~ayr~la~~-----~dyPLHlG--VTEAG~~~~G~IKSaigig~LL~~GIGDTIRVSLT~d 235 (346)
T TIGR00612 166 RNVVLSMK---ASDVAETVAAYRLLAER-----SDYPLHLG--VTEAGMGVKGIVKSSAGIGILLARGIGDTIRVSLTDD 235 (346)
T ss_pred CcEEEEEE---cCCHHHHHHHHHHHHhh-----CCCCceec--cccCCCCCCchhHHHHHHHHHHhhCCCCeEEEECCCC
Confidence 57888988 65555666666655433 46775443 2333233557899999999999999999999876644
Q ss_pred Chhhhhhhhhhhhhhcccccc
Q 006566 618 DFDFLRDTSFNLLQGVCLMSI 638 (640)
Q Consensus 618 ~~~~~~~~aF~ILQaaR~r~~ 638 (640)
+.+. -..+|.|||+..+|.-
T Consensus 236 P~~E-V~va~~IL~slglr~~ 255 (346)
T TIGR00612 236 PTHE-VPVAFEILQSLGLRAR 255 (346)
T ss_pred cHHH-HHHHHHHHHHcCCCcC
Confidence 4444 4579999999999863
No 38
>PRK00979 tetrahydromethanopterin S-methyltransferase subunit H; Provisional
Probab=94.95 E-value=3.7 Score=44.38 Aligned_cols=187 Identities=15% Similarity=0.192 Sum_probs=121.0
Q ss_pred CCceeEEEceeecCC---CCc-eEEEec----------cCCCCCCHHHHHHHHHHHHH----cCCC-EEEEecCCHHHHH
Q 006566 86 RKTRTVMVGNVAIGS---EHP-IRVQTM----------TTNDTKDVAGTVEEVMRIAD----QGAD-LVRITVQGKREAD 146 (640)
Q Consensus 86 r~Tr~V~VG~v~IGG---~~P-I~VQSM----------t~t~T~Dv~atv~Qi~rl~~----aGce-iVRvtvp~~~~A~ 146 (640)
++.+.+.||+++||| .+| +-+=|| ..+-.-|=++.-+-|++.++ -|.- ++-|-..+.++
T Consensus 6 ~~q~v~~i~g~kiGGqpGe~ptvL~gsiFY~~h~iV~D~~~G~FDk~~Ae~Li~~~~elsd~tg~p~~~~v~~~~~ea-- 83 (308)
T PRK00979 6 KEQKVYDIGGVKIGGQPGEYPTVLIGSIFYAGHKIVSDEKKGIFDKEKAEALINRQEELSDKTGNPALLDVVGESPEA-- 83 (308)
T ss_pred cccEEEEECCEEECCCCCCCCceEEEEeeecCceeeeccccCccCHHHHHHHHHHHHHHHHHhCCCeEEEEecChHHH--
Confidence 356789999999996 455 445565 34445676665554544433 4655 55555555444
Q ss_pred HHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhhcC------ceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhH
Q 006566 147 ACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFD------KIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVF 220 (640)
Q Consensus 147 ~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~v~------KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f 220 (640)
++...+.+. .-+++||+=|.- +|.+-..|++++. +.=||-=|.-..+
T Consensus 84 -m~k~I~~v~-~~~d~Pl~IDSt-~p~a~eaaLk~~~e~G~~gR~IiNSIn~e~~~------------------------ 136 (308)
T PRK00979 84 -MEKYIDFVS-EITDLPFLIDST-SPEARIAAAKYATELGLADRAIYNSINPSIEE------------------------ 136 (308)
T ss_pred -HHHHHHHHH-hcCCCCEEEeCC-CHHHHHHHHHHhhhcCCCCceEEEeccCCCCH------------------------
Confidence 444444333 258899999974 6777778888754 5557766664322
Q ss_pred HHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCCChHHHHHHHHH--------HHHHHHHCCCCcEEEEEE----eCChhh
Q 006566 221 SPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFE--------FARICRKLDFHNFLFSMK----ASNPVV 288 (640)
Q Consensus 221 ~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGdtp~gMVeSAle--------~~~i~e~~~F~diviSmK----sSn~~~ 288 (640)
+.++.+|++|++.=|+. -+++. +.|+++=++-|.+ .++++++.|+.|+.|-.= ++ ...
T Consensus 137 -eel~llk~yg~aavIvL---a~d~~-----~pt~e~Rl~i~~~~~~~~~~gll~~a~~~GI~diliDplVlpvs~-~~~ 206 (308)
T PRK00979 137 -EEIEALKESDIKAAIVL---AFDPM-----DPSVEGRLKMLEEGGKGQDKGMLPLAEEAGIERPLVDTAVTPLPG-SGA 206 (308)
T ss_pred -HHHHHHHHhCCceEEEE---EcCCC-----CCCHHHHHHHHHhccccchHHHHHHHHHcCCCcEEeccCCCcCcc-HHH
Confidence 12478999997744443 02222 2377888888888 789999999988876421 33 456
Q ss_pred HHHHHHHHHHHHHHcCCCcceEEEeecC
Q 006566 289 MVQAYRLLVAEMYVHGWDYPLHLGVTEA 316 (640)
Q Consensus 289 mV~AyRlL~~~m~~~g~dyPLHLGVTEA 316 (640)
++++-|++-++ +.||.=+|+.-.
T Consensus 207 tl~aI~~iK~~-----~G~pt~~GlSNi 229 (308)
T PRK00979 207 AIRAIFAVKAK-----FGYPVGCAPHNA 229 (308)
T ss_pred HHHHHHHHHHH-----cCCCeEEEEeCC
Confidence 67777777777 679998888665
No 39
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=94.91 E-value=2.9 Score=45.89 Aligned_cols=219 Identities=17% Similarity=0.248 Sum_probs=133.4
Q ss_pred CccccccccccccCCCceeEEE----ceeecCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEE----------
Q 006566 72 PRQKYCESIHKTVRRKTRTVMV----GNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRI---------- 137 (640)
Q Consensus 72 ~~~~Yc~s~~~~~Rr~Tr~V~V----G~v~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~rl~~aGceiVRv---------- 137 (640)
..+.|-----..+.+....|.+ |++.|||++|+.|=.= .++-.+-+..++-.+++.++|+.++|=
T Consensus 66 i~~PyKlaSre~~~~~~~~v~v~~~~~~v~iGg~~~l~vIAG-PCsIEs~eq~l~~A~~lk~~g~~~~r~g~~kpRtsp~ 144 (352)
T PRK13396 66 VEKPFKRASREYRHGEASEVVVPTPNGPVPFGENHPVVVVAG-PCSVENEEMIVETAKRVKAAGAKFLRGGAYKPRTSPY 144 (352)
T ss_pred cCCCcchhhhhcCCcCCceEEEecCcCCeEecCCCeEEEEEe-CCcccCHHHHHHHHHHHHHcCCCEEEeeeecCCCCCc
Confidence 3344543333333334556777 7999999998433221 566678899999999999999999993
Q ss_pred ecC--CHHHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhhcCceeeCCCCCCchhhhccccccchHHHHHHHhh
Q 006566 138 TVQ--GKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQH 215 (640)
Q Consensus 138 tvp--~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~ 215 (640)
+.+ +.+.-+-|.+++++ +.+|++.++|= +.-+..+++++|-+-|--+|+.+
T Consensus 145 sf~G~g~~gl~~L~~~~~e-----~Gl~~~tev~d-~~~v~~~~~~~d~lqIga~~~~n--------------------- 197 (352)
T PRK13396 145 AFQGHGESALELLAAAREA-----TGLGIITEVMD-AADLEKIAEVADVIQVGARNMQN--------------------- 197 (352)
T ss_pred ccCCchHHHHHHHHHHHHH-----cCCcEEEeeCC-HHHHHHHHhhCCeEEECcccccC---------------------
Confidence 223 34555566666664 88999999975 55555566789999999999976
Q ss_pred hHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhC-C-ChHHHHHHHHHHHHHHHHCCCCcEEEEE------EeCCh-
Q 006566 216 IEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYG-D-SPRGMVESAFEFARICRKLDFHNFLFSM------KASNP- 286 (640)
Q Consensus 216 I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryG-d-tp~gMVeSAle~~~i~e~~~F~diviSm------KsSn~- 286 (640)
.+|++.+-+.|.||=+ ++ | . |++.|..+ .|++ .+.|=+|+++-= .|+-+
T Consensus 198 -----~~LL~~va~t~kPVll------------k~-G~~~t~ee~~~A-~e~i---~~~Gn~~viL~erG~rtf~s~y~~ 255 (352)
T PRK13396 198 -----FSLLKKVGAQDKPVLL------------KR-GMAATIDEWLMA-AEYI---LAAGNPNVILCERGIRTFDRQYTR 255 (352)
T ss_pred -----HHHHHHHHccCCeEEE------------eC-CCCCCHHHHHHH-HHHH---HHcCCCeEEEEecCCccCcCCCCC
Confidence 2478888888999932 22 4 2 66555444 3443 456666666532 21211
Q ss_pred -hhHHHHHHHHHHHHHHcCCCcceEEEeecCCCCCcc---eeehHHHHHHHhhhcCCcEEEeecCCCCch
Q 006566 287 -VVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDG---RMKSAIGIGTLLQDGLGDTIRVSLTEPPEK 352 (640)
Q Consensus 287 -~~mV~AyRlL~~~m~~~g~dyPLHLGVTEAG~gedG---rIKSAiGIG~LL~DGIGDTIRVSLTedP~~ 352 (640)
..-+.+.-.|-+. +++|.-.-.|-+....|- .-+.|+..|+ |+|-+----+|..
T Consensus 256 ~~~dl~ai~~lk~~-----~~lPVi~DpsH~~G~sd~~~~~a~AAva~GA-------dGliIE~H~~pd~ 313 (352)
T PRK13396 256 NTLDLSVIPVLRSL-----THLPIMIDPSHGTGKSEYVPSMAMAAIAAGT-------DSLMIEVHPNPAK 313 (352)
T ss_pred CCcCHHHHHHHHHh-----hCCCEEECCcccCCcHHHHHHHHHHHHhhCC-------CeEEEEecCCccc
Confidence 2224444444333 678886666665422222 2233344443 6566555445544
No 40
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=94.88 E-value=2.6 Score=43.51 Aligned_cols=159 Identities=11% Similarity=0.100 Sum_probs=94.2
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCC--HHHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhh-----cCcee
Q 006566 114 TKDVAGTVEEVMRIADQGADLVRITVQG--KREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-----FDKIR 186 (640)
Q Consensus 114 T~Dv~atv~Qi~rl~~aGceiVRvtvp~--~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~-----v~KVR 186 (640)
...++..++=+..|.++|.+.|-++.|. .++.+.++.+.+. .-++++.|=+=-+++-...|+++ ++.||
T Consensus 16 ~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~l~~~----~~~~~~~~l~r~~~~~v~~a~~~~~~~~~~~i~ 91 (268)
T cd07940 16 SLTPEEKLEIARQLDELGVDVIEAGFPAASPGDFEAVKRIARE----VLNAEICGLARAVKKDIDAAAEALKPAKVDRIH 91 (268)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHh----CCCCEEEEEccCCHhhHHHHHHhCCCCCCCEEE
Confidence 3567778888899999999999999884 6888887777764 33466665432233333344443 67788
Q ss_pred eC-CCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCCChHHHHHHHHHH
Q 006566 187 VN-PGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEF 265 (640)
Q Consensus 187 IN-PGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGdtp~gMVeSAle~ 265 (640)
|- |-|=...+++|.. -.+..-+.+.+.++.||++|..++++.-.++- .+|+-+ .+.
T Consensus 92 i~~~~s~~~~~~~~~~----------~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~---------~~~~~~----~~~ 148 (268)
T cd07940 92 TFIATSDIHLKYKLKK----------TREEVLERAVEAVEYAKSHGLDVEFSAEDATR---------TDLDFL----IEV 148 (268)
T ss_pred EEecCCHHHHHHHhCC----------CHHHHHHHHHHHHHHHHHcCCeEEEeeecCCC---------CCHHHH----HHH
Confidence 63 4332221221111 11233356889999999999988876533332 234333 344
Q ss_pred HHHHHHCCCCcEEEEEEeCChhhHHHHHHHHHHHHH
Q 006566 266 ARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMY 301 (640)
Q Consensus 266 ~~i~e~~~F~diviSmKsSn~~~mV~AyRlL~~~m~ 301 (640)
++-+.+.|-+ .|+++-|.=..+-+..+.+++.+.
T Consensus 149 ~~~~~~~G~~--~i~l~DT~G~~~P~~v~~lv~~l~ 182 (268)
T cd07940 149 VEAAIEAGAT--TINIPDTVGYLTPEEFGELIKKLK 182 (268)
T ss_pred HHHHHHcCCC--EEEECCCCCCCCHHHHHHHHHHHH
Confidence 4555566755 578888743333334444444443
No 41
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=94.72 E-value=1.1 Score=44.87 Aligned_cols=143 Identities=22% Similarity=0.243 Sum_probs=89.4
Q ss_pred CCCHHHHHHHHHHHHHcCCCEE--EEecCCHHHHHHHHHHHHHhh-cCCCCcceeeccCCC---------HH----HHHH
Q 006566 114 TKDVAGTVEEVMRIADQGADLV--RITVQGKREADACFEIKNSLV-QKNYNIPLVADIHFA---------PS----VALR 177 (640)
Q Consensus 114 T~Dv~atv~Qi~rl~~aGceiV--Rvtvp~~~~A~~l~~I~~~L~-~~g~~iPLVADIHF~---------~~----~Al~ 177 (640)
..+++..+.++.+..++||+.| -+...+.++.+.+..+++-.. .+++.+|+|.|.|.+ +. ++..
T Consensus 72 ~~~~~~~~~~v~~a~~~Ga~~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~ 151 (235)
T cd00958 72 DDNDKVLVASVEDAVRLGADAVGVTVYVGSEEEREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARI 151 (235)
T ss_pred CCCchhhhcCHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHHHHH
Confidence 4677888889999999999966 555555554444444443211 136889999998772 22 2334
Q ss_pred Hhhh-cCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCCChH
Q 006566 178 VAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPR 256 (640)
Q Consensus 178 Aa~~-v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGdtp~ 256 (640)
|.+. +|=|-+++.. +-+ .++.+++ ...+|+ +-.|+... +|+
T Consensus 152 a~~~GaD~Ik~~~~~--~~~----------------------~~~~i~~---~~~~pv---v~~GG~~~-------~~~- 193 (235)
T cd00958 152 GAELGADIVKTKYTG--DAE----------------------SFKEVVE---GCPVPV---VIAGGPKK-------DSE- 193 (235)
T ss_pred HHHHCCCEEEecCCC--CHH----------------------HHHHHHh---cCCCCE---EEeCCCCC-------CCH-
Confidence 5555 6666665321 111 1344443 334565 44455411 233
Q ss_pred HHHHHHHHHHHHHHHCCCCcEEEE---EEeCChhhHHHHHHHHH
Q 006566 257 GMVESAFEFARICRKLDFHNFLFS---MKASNPVVMVQAYRLLV 297 (640)
Q Consensus 257 gMVeSAle~~~i~e~~~F~diviS---mKsSn~~~mV~AyRlL~ 297 (640)
+.++|.++.|.+.|.+-+.++ +++.||..+++++|.++
T Consensus 194 ---~~~l~~~~~~~~~Ga~gv~vg~~i~~~~dp~~~~~~~~~~~ 234 (235)
T cd00958 194 ---EEFLKMVYDAMEAGAAGVAVGRNIFQRPDPVAMLRAISAVV 234 (235)
T ss_pred ---HHHHHHHHHHHHcCCcEEEechhhhcCCCHHHHHHHHHHHh
Confidence 456778888889999887776 78899998888888764
No 42
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=94.24 E-value=0.9 Score=48.60 Aligned_cols=157 Identities=18% Similarity=0.236 Sum_probs=100.8
Q ss_pred HHHHHHHHHcCCCEEEEe-cCCHHHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhh-cCceeeC----CCCCCc
Q 006566 121 VEEVMRIADQGADLVRIT-VQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVN----PGNFAD 194 (640)
Q Consensus 121 v~Qi~rl~~aGceiVRvt-vp~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~-v~KVRIN----PGN~~d 194 (640)
..++..|+++|||+|=-| ++.+ ..+-...||+ .|++|+|||+- +..=|+.|++. ++=||-- -||+..
T Consensus 86 ~~Ea~~L~~~GvDiID~Te~lrp-ad~~~~~~K~-----~f~~~fmad~~-~l~EAlrai~~GadmI~Ttge~gtg~v~~ 158 (293)
T PRK04180 86 FVEAQILEALGVDYIDESEVLTP-ADEEYHIDKW-----DFTVPFVCGAR-NLGEALRRIAEGAAMIRTKGEAGTGNVVE 158 (293)
T ss_pred HHHHHHHHHcCCCEEeccCCCCc-hHHHHHHHHH-----HcCCCEEccCC-CHHHHHHHHHCCCCeeeccCCCCCccHHH
Confidence 889999999999999432 1222 2345555665 47999999996 45566777777 9999977 788876
Q ss_pred hhhhcc--------ccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEE-EeeCCCCCcHhHHHHhC-CChHHHHHHHHH
Q 006566 195 RRAQFE--------QLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVR-IGTNHGSLSDRIMSYYG-DSPRGMVESAFE 264 (640)
Q Consensus 195 ~~k~F~--------~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIR-IGvNhGSLs~ril~ryG-dtp~gMVeSAle 264 (640)
--+... ..-||+++-...-+...--|.-|-+.++..++|+= |.. | | .|| +
T Consensus 159 av~h~r~~~~~i~~L~gyt~~~~~~~a~~~~~~~elL~ei~~~~~iPVV~~Ae--G----------GI~TP--------e 218 (293)
T PRK04180 159 AVRHMRQINGEIRRLTSMSEDELYTAAKELQAPYELVKEVAELGRLPVVNFAA--G----------GIATP--------A 218 (293)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHhhccccCCCHHHHHHHHHhCCCCEEEEEe--C----------CCCCH--------H
Confidence 333222 33688776222111122333333344444567761 222 1 2 366 3
Q ss_pred HHHHHHHCCCCcEEEE---EEeCChhhHHHHHHHHHHHHHHcCCCcce
Q 006566 265 FARICRKLDFHNFLFS---MKASNPVVMVQAYRLLVAEMYVHGWDYPL 309 (640)
Q Consensus 265 ~~~i~e~~~F~diviS---mKsSn~~~mV~AyRlL~~~m~~~g~dyPL 309 (640)
.+..+-+.|-+-+++. +||.||..+.++++..... |+-|-
T Consensus 219 daa~vme~GAdgVaVGSaI~ks~dP~~~akafv~ai~~-----~~~~~ 261 (293)
T PRK04180 219 DAALMMQLGADGVFVGSGIFKSGDPEKRARAIVEATTH-----YDDPE 261 (293)
T ss_pred HHHHHHHhCCCEEEEcHHhhcCCCHHHHHHHHHHHHHH-----cCCHH
Confidence 4455556898888775 7889999999999888887 77664
No 43
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=94.10 E-value=0.87 Score=42.90 Aligned_cols=144 Identities=17% Similarity=0.238 Sum_probs=97.4
Q ss_pred HHHHHcCCCEEEEecCCHHHH----HHHHHHHHHhhcCCCCcceee-ccCCCH--------------------HHHHHHh
Q 006566 125 MRIADQGADLVRITVQGKREA----DACFEIKNSLVQKNYNIPLVA-DIHFAP--------------------SVALRVA 179 (640)
Q Consensus 125 ~rl~~aGceiVRvtvp~~~~A----~~l~~I~~~L~~~g~~iPLVA-DIHF~~--------------------~~Al~Aa 179 (640)
..+.++|++-|=+........ .-+.++++.|++.|..++-+. ..++.+ +....|.
T Consensus 2 ~~~~~~G~~~vE~~~~~~~~~~~~~~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~ 81 (213)
T PF01261_consen 2 EAAAEAGFDGVELRFDDGQPWDEKDDEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDEREEALEYLKKAIDLAK 81 (213)
T ss_dssp HHHHHTTHSEEEEEHHHHSHHTHHHHHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHHHHHHHHHH
T ss_pred hHHHHcCCCEEEEecCCCcccccchHHHHHHHHHHHHcCCeEEEEecccccccccccccCcchhhHHHHHHHHHHHHHHH
Confidence 567889999999987776555 468889999999888844322 222111 1222344
Q ss_pred hh-cCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCCChHHH
Q 006566 180 EC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGM 258 (640)
Q Consensus 180 ~~-v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGdtp~gM 258 (640)
+. ++.|++.||.+.... ...+.+.++++.+.+.++++.|+++|+-|-+=...+...... .+
T Consensus 82 ~lg~~~i~~~~g~~~~~~---------~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~-----~~---- 143 (213)
T PF01261_consen 82 RLGAKYIVVHSGRYPSGP---------EDDTEENWERLAENLRELAEIAEEYGVRIALENHPGPFSETP-----FS---- 143 (213)
T ss_dssp HHTBSEEEEECTTESSST---------TSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SSSSSSSEE-----SS----
T ss_pred HhCCCceeecCccccccc---------CCCHHHHHHHHHHHHHHHHhhhhhhcceEEEecccCccccch-----hh----
Confidence 44 899999999432211 112347888999999999999999998887765544443221 11
Q ss_pred HHHHHHHHHHHHHCCCCcEEEEEEeCChhhH
Q 006566 259 VESAFEFARICRKLDFHNFLFSMKASNPVVM 289 (640)
Q Consensus 259 VeSAle~~~i~e~~~F~diviSmKsSn~~~m 289 (640)
+-++.++|++.+=.++-+.+=.++....
T Consensus 144 ---~~~~~~~l~~~~~~~~~i~~D~~h~~~~ 171 (213)
T PF01261_consen 144 ---VEEIYRLLEEVDSPNVGICFDTGHLIMA 171 (213)
T ss_dssp ---HHHHHHHHHHHTTTTEEEEEEHHHHHHT
T ss_pred ---HHHHHHHHhhcCCCcceEEEehHHHHHc
Confidence 4567888888888888998888875533
No 44
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=93.79 E-value=1.3 Score=47.21 Aligned_cols=202 Identities=19% Similarity=0.261 Sum_probs=118.8
Q ss_pred ceeecCCCCceEEEe-ccCCCCCCH-HHHHHHHHH-HHHcCCCEEEEec--------------CC-HHHHHHHHHHHHHh
Q 006566 94 GNVAIGSEHPIRVQT-MTTNDTKDV-AGTVEEVMR-IADQGADLVRITV--------------QG-KREADACFEIKNSL 155 (640)
Q Consensus 94 G~v~IGG~~PI~VQS-Mt~t~T~Dv-~atv~Qi~r-l~~aGceiVRvtv--------------p~-~~~A~~l~~I~~~L 155 (640)
|++.|||+.|..|=. =+...+.|. -.+.+++++ +.++|+.++|=+. ++ .+--+-|.++|++
T Consensus 7 ~~~~ig~~~~~~~iaGPCsvEs~e~~~~iA~~lk~i~~~~g~~~~fK~sf~KapRTSp~sFqG~G~eeGL~iL~~vk~~- 85 (281)
T PRK12457 7 PGITVGNDLPFVLFGGINVLESLDFTLDVCGEYVEVTRKLGIPFVFKASFDKANRSSIHSYRGVGLDEGLRIFEEVKAR- 85 (281)
T ss_pred CCeEEcCCCceEEEecCCcccCHHHHHHHHHHHHHHHHHCCCcEEeeeccCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-
Confidence 558889887654322 222223222 223333443 3469999998743 23 4667788888886
Q ss_pred hcCCCCcceeeccCCCHHHHHHHhhhcCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEE
Q 006566 156 VQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVR 235 (640)
Q Consensus 156 ~~~g~~iPLVADIHF~~~~Al~Aa~~v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIR 235 (640)
+.+|+|.|||-. .-+..+++++|=+-|--=|.-. .+|++.|.+.|.|+
T Consensus 86 ----~GlpvvTeV~~~-~~~~~~ae~vDilQIgAr~~rn--------------------------tdLL~a~~~t~kpV- 133 (281)
T PRK12457 86 ----FGVPVITDVHEV-EQAAPVAEVADVLQVPAFLARQ--------------------------TDLVVAIAKTGKPV- 133 (281)
T ss_pred ----HCCceEEEeCCH-HHHHHHhhhCeEEeeCchhhch--------------------------HHHHHHHhccCCeE-
Confidence 999999999965 4455677899999996555532 25888888889998
Q ss_pred EeeCCCCCcHhHHHHhC--CChHHHHHHHHHHHHHHHHCCCCcEEEEEEeCCh--hhHHHHHHHHHHHHHHcCCCcceEE
Q 006566 236 IGTNHGSLSDRIMSYYG--DSPRGMVESAFEFARICRKLDFHNFLFSMKASNP--VVMVQAYRLLVAEMYVHGWDYPLHL 311 (640)
Q Consensus 236 IGvNhGSLs~ril~ryG--dtp~gMVeSAle~~~i~e~~~F~diviSmKsSn~--~~mV~AyRlL~~~m~~~g~dyPLHL 311 (640)
+=|| | -+|+.|.-+|.. +.+.|=++|++-=--+.. ...+--.|-+ ..|.+.-..+|.-+
T Consensus 134 -------~lKr-----Gqf~s~~e~~~aae~----i~~~Gn~~vilcERG~~fgy~~~~~D~~~i-p~mk~~~t~lPVi~ 196 (281)
T PRK12457 134 -------NIKK-----PQFMSPTQMKHVVSK----CREAGNDRVILCERGSSFGYDNLVVDMLGF-RQMKRTTGDLPVIF 196 (281)
T ss_pred -------EecC-----CCcCCHHHHHHHHHH----HHHcCCCeEEEEeCCCCCCCCCcccchHHH-HHHHhhCCCCCEEE
Confidence 3233 6 588777665543 345555666553332210 0000011111 12333223689888
Q ss_pred EeecC-----------CCCCc---ceeehHHHHHHHhhhcCCcEEEeecCCCCch
Q 006566 312 GVTEA-----------GEGED---GRMKSAIGIGTLLQDGLGDTIRVSLTEPPEK 352 (640)
Q Consensus 312 GVTEA-----------G~ged---GrIKSAiGIG~LL~DGIGDTIRVSLTedP~~ 352 (640)
=.|-+ |.-.+ -..+.|+..|+ |++.+-.-.||++
T Consensus 197 DpSHsvq~p~~~g~~s~G~re~v~~larAAvA~Ga-------DGl~iEvHpdP~~ 244 (281)
T PRK12457 197 DVTHSLQCRDPLGAASGGRRRQVLDLARAGMAVGL-------AGLFLEAHPDPDR 244 (281)
T ss_pred eCCccccCCCCCCCCCCCCHHHHHHHHHHHHHhCC-------CEEEEEecCCccc
Confidence 88876 11111 23455666554 8888877777765
No 45
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=93.78 E-value=1.8 Score=43.46 Aligned_cols=146 Identities=10% Similarity=0.002 Sum_probs=95.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCCCcceeecc-----------CCCH-----------
Q 006566 115 KDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADI-----------HFAP----------- 172 (640)
Q Consensus 115 ~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~iPLVADI-----------HF~~----------- 172 (640)
.+++.+++++ .++|.+-|=+..|.. ....+|++.|.+.|..++.+..- +++|
T Consensus 14 ~~l~e~~~~~---~e~G~~~vEl~~~~~---~~~~~l~~~l~~~gl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (254)
T TIGR03234 14 LPFLERFAAA---AQAGFTGVEYLFPYD---WDAEALKARLAAAGLEQVLFNLPAGDWAAGERGIACLPGREEEFREGVA 87 (254)
T ss_pred CCHHHHHHHH---HHcCCCEEEecCCcc---CCHHHHHHHHHHcCCeEEEEeCCCCccccCCCccccCCccHHHHHHHHH
Confidence 3566555554 577888888877653 34677788888889888766421 1112
Q ss_pred HHHHHHhhh-cCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEee-CCCCCcHhHHHH
Q 006566 173 SVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT-NHGSLSDRIMSY 250 (640)
Q Consensus 173 ~~Al~Aa~~-v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGv-NhGSLs~ril~r 250 (640)
+....|.+. +..||+.+|-.... ..+++..+...+.+.++++.|+++|+.|=|=. |+-
T Consensus 88 ~~i~~a~~lg~~~i~~~~g~~~~~-----------~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~~~--------- 147 (254)
T TIGR03234 88 LAIAYARALGCPQVNCLAGKRPAG-----------VSPEEARATLVENLRYAADALDRIGLTLLIEPINSF--------- 147 (254)
T ss_pred HHHHHHHHhCCCEEEECcCCCCCC-----------CCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECCcc---------
Confidence 122234444 78899988843211 11334456677889999999999996653321 221
Q ss_pred hCCChHHHHHHHHHHHHHHHHCCCCcEEEEEEeCChhh
Q 006566 251 YGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVV 288 (640)
Q Consensus 251 yGdtp~gMVeSAle~~~i~e~~~F~diviSmKsSn~~~ 288 (640)
+.|..+++++-+.++++++.+-.++-+.+=.+|...
T Consensus 148 --~~~~~~l~t~~~~~~li~~v~~~~~~i~~D~~h~~~ 183 (254)
T TIGR03234 148 --DMPGFFLTTTEQALAVIDDVGRENLKLQYDLYHMQR 183 (254)
T ss_pred --cCCCChhcCHHHHHHHHHHhCCCCEeEeeehhhhhh
Confidence 223346788889999999999888888888887553
No 46
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=93.75 E-value=2.5 Score=42.42 Aligned_cols=171 Identities=16% Similarity=0.137 Sum_probs=103.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEecCCH--------HHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhh-c
Q 006566 112 NDTKDVAGTVEEVMRIADQGADLVRITVQGK--------READACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-F 182 (640)
Q Consensus 112 t~T~Dv~atv~Qi~rl~~aGceiVRvtvp~~--------~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~-v 182 (640)
....+++..++=+..|.++|+++|=++.|.. .+.+.++.+++ .+-++++.+...=..+.+..+.++ +
T Consensus 13 ~~~~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~----~~~~~~~~~l~~~~~~~i~~a~~~g~ 88 (265)
T cd03174 13 GATFSTEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRK----LVPNVKLQALVRNREKGIERALEAGV 88 (265)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHh----ccCCcEEEEEccCchhhHHHHHhCCc
Confidence 3456788889999999999999999998875 34555666655 354678877776457888888888 8
Q ss_pred Cceee-CCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCCChHHHHHH
Q 006566 183 DKIRV-NPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVES 261 (640)
Q Consensus 183 ~KVRI-NPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGdtp~gMVeS 261 (640)
+-||| -+++=...++ .+....+..-++..+.++.||++|..+++.+-.-+-. ..+|+-
T Consensus 89 ~~i~i~~~~s~~~~~~----------~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~-------~~~~~~---- 147 (265)
T cd03174 89 DEVRIFDSASETHSRK----------NLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGC-------KTDPEY---- 147 (265)
T ss_pred CEEEEEEecCHHHHHH----------HhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCC-------CCCHHH----
Confidence 88885 3433111000 0111222334557788999999999998887221110 123433
Q ss_pred HHHHHHHHHHCCCCcEEEEEEeCChhhHHHHHHHHHHHHHHcCCCcce
Q 006566 262 AFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPL 309 (640)
Q Consensus 262 Ale~~~i~e~~~F~diviSmKsSn~~~mV~AyRlL~~~m~~~g~dyPL 309 (640)
..++++.+.+.|-+.|. ++-+.-...=+.++.+++.+.+.--+-|+
T Consensus 148 l~~~~~~~~~~g~~~i~--l~Dt~G~~~P~~v~~li~~l~~~~~~~~~ 193 (265)
T cd03174 148 VLEVAKALEEAGADEIS--LKDTVGLATPEEVAELVKALREALPDVPL 193 (265)
T ss_pred HHHHHHHHHHcCCCEEE--echhcCCcCHHHHHHHHHHHHHhCCCCeE
Confidence 34567777788876544 44443223333444444444433222444
No 47
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=93.69 E-value=4.5 Score=41.64 Aligned_cols=151 Identities=13% Similarity=0.072 Sum_probs=95.1
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEEEe-------------cCCHHHHHHHHHHHHHhhcCCCCcceeeccCC-CHHHHH
Q 006566 111 TNDTKDVAGTVEEVMRIADQGADLVRIT-------------VQGKREADACFEIKNSLVQKNYNIPLVADIHF-APSVAL 176 (640)
Q Consensus 111 ~t~T~Dv~atv~Qi~rl~~aGceiVRvt-------------vp~~~~A~~l~~I~~~L~~~g~~iPLVADIHF-~~~~Al 176 (640)
+.--.+++..++-+..|.++|.+.+=+. -|...+.+.++.+++... +..+-...+-+. +++-..
T Consensus 15 ~~~~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~--~~~~~~~~~~~~~~~~~i~ 92 (263)
T cd07943 15 VRHQFTLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALK--QAKLGVLLLPGIGTVDDLK 92 (263)
T ss_pred CCeecCHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhcc--CCEEEEEecCCccCHHHHH
Confidence 3344678888999999999999999998 455667788888876532 233221221111 345556
Q ss_pred HHhhh-cCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCCCh
Q 006566 177 RVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSP 255 (640)
Q Consensus 177 ~Aa~~-v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGdtp 255 (640)
.|+++ ++.||| +.. .. +. ..+.+.++.+|++|..+++.+-.. |..+|
T Consensus 93 ~a~~~g~~~iri----~~~-~s--------------~~----~~~~~~i~~ak~~G~~v~~~~~~~---------~~~~~ 140 (263)
T cd07943 93 MAADLGVDVVRV----ATH-CT--------------EA----DVSEQHIGAARKLGMDVVGFLMMS---------HMASP 140 (263)
T ss_pred HHHHcCCCEEEE----Eec-hh--------------hH----HHHHHHHHHHHHCCCeEEEEEEec---------cCCCH
Confidence 77777 999997 111 10 00 147889999999999888776222 22355
Q ss_pred HHHHHHHHHHHHHHHHCCCCcEEEEEEeCChhhHHHHHHHHHHHHH
Q 006566 256 RGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMY 301 (640)
Q Consensus 256 ~gMVeSAle~~~i~e~~~F~diviSmKsSn~~~mV~AyRlL~~~m~ 301 (640)
+..++.++.+.+.|-+ .|+++-|.=..+=+..+.+++++.
T Consensus 141 ----~~~~~~~~~~~~~G~d--~i~l~DT~G~~~P~~v~~lv~~l~ 180 (263)
T cd07943 141 ----EELAEQAKLMESYGAD--CVYVTDSAGAMLPDDVRERVRALR 180 (263)
T ss_pred ----HHHHHHHHHHHHcCCC--EEEEcCCCCCcCHHHHHHHHHHHH
Confidence 3345566777888876 468886654444444555555543
No 48
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=93.58 E-value=1.3 Score=48.82 Aligned_cols=153 Identities=17% Similarity=0.150 Sum_probs=93.0
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEEEecCC--HHHHHHHHHHHHHhhcCCCCcceeeccCCC---HHHHHHHhhh-cCc
Q 006566 111 TNDTKDVAGTVEEVMRIADQGADLVRITVQG--KREADACFEIKNSLVQKNYNIPLVADIHFA---PSVALRVAEC-FDK 184 (640)
Q Consensus 111 ~t~T~Dv~atv~Qi~rl~~aGceiVRvtvp~--~~~A~~l~~I~~~L~~~g~~iPLVADIHF~---~~~Al~Aa~~-v~K 184 (640)
--|..+.+..++.++++.++|.+++=+..|. ...++.++.|++. .-..-+++|+|+- -..+..|+++ ++-
T Consensus 9 alD~~~~~~~~~~~~~~~~~Gv~~ie~g~p~~~~~~~~~i~~l~~~----~~~~~ii~D~kl~d~g~~~v~~a~~aGAdg 84 (430)
T PRK07028 9 ALDLLELDRAVEIAKEAVAGGADWIEAGTPLIKSEGMNAIRTLRKN----FPDHTIVADMKTMDTGAIEVEMAAKAGADI 84 (430)
T ss_pred EeccCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhhHHHHHHHHHH----CCCCEEEEEeeeccchHHHHHHHHHcCCCE
Confidence 4567788999999999999999999886554 3456666666663 2235678999996 2344456666 766
Q ss_pred eeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEee-CCCCCcHhHHHHhCCChHHHHHHHH
Q 006566 185 IRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT-NHGSLSDRIMSYYGDSPRGMVESAF 263 (640)
Q Consensus 185 VRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGv-NhGSLs~ril~ryGdtp~gMVeSAl 263 (640)
|-+- |- .+ . ..+.++++.||++|..+-+|+ +.. |+ .
T Consensus 85 V~v~-g~-~~-~---------------------~~~~~~i~~a~~~G~~~~~g~~s~~------------t~-------~ 121 (430)
T PRK07028 85 VCIL-GL-AD-D---------------------STIEDAVRAARKYGVRLMADLINVP------------DP-------V 121 (430)
T ss_pred EEEe-cC-CC-h---------------------HHHHHHHHHHHHcCCEEEEEecCCC------------CH-------H
Confidence 6653 21 11 0 015678999999999987773 221 21 1
Q ss_pred HHHHHHHHCCCCcEEEEE---EeCChhhHHHHHHHHHHHHHHcCCCcce--EEEeec
Q 006566 264 EFARICRKLDFHNFLFSM---KASNPVVMVQAYRLLVAEMYVHGWDYPL--HLGVTE 315 (640)
Q Consensus 264 e~~~i~e~~~F~diviSm---KsSn~~~mV~AyRlL~~~m~~~g~dyPL--HLGVTE 315 (640)
|.++.+.++|.+-+.+.. +.+-.....+..|.+.+. +++|+ |=|+|.
T Consensus 122 e~~~~a~~~GaD~I~~~pg~~~~~~~~~~~~~l~~l~~~-----~~iPI~a~GGI~~ 173 (430)
T PRK07028 122 KRAVELEELGVDYINVHVGIDQQMLGKDPLELLKEVSEE-----VSIPIAVAGGLDA 173 (430)
T ss_pred HHHHHHHhcCCCEEEEEeccchhhcCCChHHHHHHHHhh-----CCCcEEEECCCCH
Confidence 234555667776665542 111112234445555544 56787 545554
No 49
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=93.47 E-value=2 Score=43.42 Aligned_cols=150 Identities=12% Similarity=0.134 Sum_probs=89.3
Q ss_pred EEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHH--------HHHHHHHHHHHhhcCCCCcceee-cc-------C
Q 006566 106 VQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKR--------EADACFEIKNSLVQKNYNIPLVA-DI-------H 169 (640)
Q Consensus 106 VQSMt~t~T~Dv~atv~Qi~rl~~aGceiVRvtvp~~~--------~A~~l~~I~~~L~~~g~~iPLVA-DI-------H 169 (640)
|++-+-....+.+. .+.++.++|.+-|=+...+.. +.+.+..+++.|.+.|..++-++ +- |
T Consensus 7 ~~~~~~~~~~~~~e---~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gl~i~~~~~~~~~~~~~~~ 83 (284)
T PRK13210 7 IYEKALPKHLSWEE---RLVFAKELGFDFVEMSVDESDERLARLDWSKEERLSLVKAIYETGVRIPSMCLSGHRRFPFGS 83 (284)
T ss_pred hhhhhcCCCCCHHH---HHHHHHHcCCCeEEEecCCcccccccccCCHHHHHHHHHHHHHcCCCceEEecccccCcCCCC
Confidence 34433333344444 455667889999888764321 24568889999999999988663 33 2
Q ss_pred CCHH----------HHHHHhh-h-cCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEe
Q 006566 170 FAPS----------VALRVAE-C-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIG 237 (640)
Q Consensus 170 F~~~----------~Al~Aa~-~-v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIG 237 (640)
.++. -++.+++ . ++.||+.++...... ...+..+++.+.+.++++.|+++|+.| +
T Consensus 84 ~d~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~~-----------~~~~~~~~~~~~l~~l~~~a~~~gv~l--~ 150 (284)
T PRK13210 84 RDPATRERALEIMKKAIRLAQDLGIRTIQLAGYDVYYEE-----------KSEETRQRFIEGLAWAVEQAAAAQVML--A 150 (284)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCEEEECCccccccc-----------ccHHHHHHHHHHHHHHHHHHHHhCCEE--E
Confidence 3442 2333333 4 888998533211100 012455778888999999999999754 6
Q ss_pred e-CCCCCcHhHHHHhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEEeCC
Q 006566 238 T-NHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASN 285 (640)
Q Consensus 238 v-NhGSLs~ril~ryGdtp~gMVeSAle~~~i~e~~~F~diviSmKsSn 285 (640)
+ ||+. ..+.+.-+.+++++..+-.++.+-+=..|
T Consensus 151 lE~~~~--------------~~~~~~~~~~~l~~~v~~~~~~~~~D~~h 185 (284)
T PRK13210 151 VEIMDT--------------PFMNSISKWKKWDKEIDSPWLTVYPDVGN 185 (284)
T ss_pred EEecCc--------------cccCCHHHHHHHHHHcCCCceeEEecCCh
Confidence 5 4431 12334445566777766666665544443
No 50
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=93.19 E-value=3.5 Score=44.10 Aligned_cols=157 Identities=19% Similarity=0.247 Sum_probs=94.2
Q ss_pred HHHHHHHHHcCCCEEEEec-CCHHHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhh-cCceeeCC----CCCCc
Q 006566 121 VEEVMRIADQGADLVRITV-QGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNP----GNFAD 194 (640)
Q Consensus 121 v~Qi~rl~~aGceiVRvtv-p~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~-v~KVRINP----GN~~d 194 (640)
..++..|.++|||||=-|- +.. ..+-+..||++ |++|++||+- +..=|+.|++. +|=||--= ||+..
T Consensus 77 ~~Ea~~L~eaGvDiIDaT~r~rP-~~~~~~~iK~~-----~~~l~MAD~s-tleEal~a~~~Gad~I~TTl~gyT~~~~~ 149 (283)
T cd04727 77 FVEAQILEALGVDMIDESEVLTP-ADEEHHIDKHK-----FKVPFVCGAR-NLGEALRRISEGAAMIRTKGEAGTGNVVE 149 (283)
T ss_pred HHHHHHHHHcCCCEEeccCCCCc-HHHHHHHHHHH-----cCCcEEccCC-CHHHHHHHHHCCCCEEEecCCCCCCcHHH
Confidence 8899999999999994221 222 35566677764 7999999996 45566778887 99898542 33111
Q ss_pred hhhh--------ccccccchHH-HHHHHhhhHhhHHHHHHHHHHcCCeEE-EeeCCCCCcHhHHHHhCCChHHHHHHHHH
Q 006566 195 RRAQ--------FEQLEYTDDE-YQKELQHIEEVFSPLVEKCKKYGRAVR-IGTNHGSLSDRIMSYYGDSPRGMVESAFE 264 (640)
Q Consensus 195 ~~k~--------F~~~eYtdee-Y~~Ele~I~~~f~~lV~~~Ke~g~aIR-IGvNhGSLs~ril~ryGdtp~gMVeSAle 264 (640)
--+. -...-|||++ |.. -....--|.-|-+.++..++|+= |.. |-+ .|| +
T Consensus 150 ~~~~~~~i~~~i~~~~gyt~~t~~~~-~~~~~~d~elLk~l~~~~~iPVV~iAe--GGI---------~Tp--------e 209 (283)
T cd04727 150 AVRHMRAVNGEIRKLQSMSEEELYAV-AKEIQAPYELVKETAKLGRLPVVNFAA--GGV---------ATP--------A 209 (283)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHhh-hcccCCCHHHHHHHHHhcCCCeEEEEe--CCC---------CCH--------H
Confidence 0000 0123577766 321 11112223333344444567762 122 111 256 3
Q ss_pred HHHHHHHCCCCcEEEE---EEeCChhhHHHHHHHHHHHHHHcCCCcce
Q 006566 265 FARICRKLDFHNFLFS---MKASNPVVMVQAYRLLVAEMYVHGWDYPL 309 (640)
Q Consensus 265 ~~~i~e~~~F~diviS---mKsSn~~~mV~AyRlL~~~m~~~g~dyPL 309 (640)
.++.+-+.|-+-+++. +++.||..+++.++....+ |+-|-
T Consensus 210 na~~v~e~GAdgVaVGSAI~~a~dP~~~tk~f~~ai~~-----~~~~~ 252 (283)
T cd04727 210 DAALMMQLGADGVFVGSGIFKSENPEKRARAIVEAVTH-----YDDPE 252 (283)
T ss_pred HHHHHHHcCCCEEEEcHHhhcCCCHHHHHHHHHHHHHh-----cCCHH
Confidence 4445556888888875 7888999888888887777 65553
No 51
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=93.16 E-value=5.6 Score=43.51 Aligned_cols=166 Identities=16% Similarity=0.135 Sum_probs=104.1
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCCHHHH--HHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhh-cCceee-CC
Q 006566 114 TKDVAGTVEEVMRIADQGADLVRITVQGKREA--DACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRV-NP 189 (640)
Q Consensus 114 T~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~A--~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~-v~KVRI-NP 189 (640)
...++.-++=+..|.++|.+.+=+..|.+.+. +.++.|.+ .+.+.-+++-..-..+-...|+++ ++.||| -|
T Consensus 22 ~~s~e~k~~ia~~L~~~GV~~IE~G~p~~~~~~~e~i~~i~~----~~~~~~i~~~~r~~~~di~~a~~~g~~~i~i~~~ 97 (378)
T PRK11858 22 VFTNEEKLAIARMLDEIGVDQIEAGFPAVSEDEKEAIKAIAK----LGLNASILALNRAVKSDIDASIDCGVDAVHIFIA 97 (378)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEeCCCcChHHHHHHHHHHh----cCCCeEEEEEcccCHHHHHHHHhCCcCEEEEEEc
Confidence 45677888888999999999999999977555 46777765 366667777766667667777787 888886 23
Q ss_pred CCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCCChHHHHHHHHHHHHHH
Q 006566 190 GNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARIC 269 (640)
Q Consensus 190 GN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGdtp~gMVeSAle~~~i~ 269 (640)
-+=...+++ +..-.+..-+++.+.|+.||++|.-++++.-.++- .+| +-.+++++.+
T Consensus 98 ~Sd~h~~~~----------~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~r---------~~~----~~l~~~~~~~ 154 (378)
T PRK11858 98 TSDIHIKHK----------LKKTREEVLERMVEAVEYAKDHGLYVSFSAEDASR---------TDL----DFLIEFAKAA 154 (378)
T ss_pred CCHHHHHHH----------hCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCCC---------CCH----HHHHHHHHHH
Confidence 222111111 11123455567888999999999999887422221 133 4455667777
Q ss_pred HHCCCCcEEEEEEeCChhhHHHHHHHHHHHHHHcCCCcce
Q 006566 270 RKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPL 309 (640)
Q Consensus 270 e~~~F~diviSmKsSn~~~mV~AyRlL~~~m~~~g~dyPL 309 (640)
.+.|-+. |+++-+.=..+=..++.++..+.+. ++.||
T Consensus 155 ~~~Ga~~--I~l~DT~G~~~P~~v~~lv~~l~~~-~~~~l 191 (378)
T PRK11858 155 EEAGADR--VRFCDTVGILDPFTMYELVKELVEA-VDIPI 191 (378)
T ss_pred HhCCCCE--EEEeccCCCCCHHHHHHHHHHHHHh-cCCeE
Confidence 7888775 4555554333333344444444322 24555
No 52
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=93.13 E-value=0.72 Score=51.39 Aligned_cols=102 Identities=19% Similarity=0.224 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHcCCCEEEEec---CCHHHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhh-cCceeeC--CCC
Q 006566 118 AGTVEEVMRIADQGADLVRITV---QGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVN--PGN 191 (640)
Q Consensus 118 ~atv~Qi~rl~~aGceiVRvtv---p~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~-v~KVRIN--PGN 191 (640)
+.+.+++..|.++|+|+|=|.+ .+..-.+.+++||+. --++|++|=-=.++.-|..++++ +|-|++- ||-
T Consensus 223 ~~~~~r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~----~~~~~vi~G~v~t~~~a~~l~~aGad~i~vg~g~G~ 298 (450)
T TIGR01302 223 EFDKERAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKKT----YPDLDIIAGNVATAEQAKALIDAGADGLRVGIGPGS 298 (450)
T ss_pred hhHHHHHHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHHh----CCCCCEEEEeCCCHHHHHHHHHhCCCEEEECCCCCc
Confidence 4677899999999999999999 667777778888774 23699999555789999999999 9999954 774
Q ss_pred CCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeE
Q 006566 192 FADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAV 234 (640)
Q Consensus 192 ~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aI 234 (640)
+-..+. +...-|.. -..+.++.+.|+++++||
T Consensus 299 ~~~t~~-~~~~g~p~----------~~~i~~~~~~~~~~~vpv 330 (450)
T TIGR01302 299 ICTTRI-VAGVGVPQ----------ITAVYDVAEYAAQSGIPV 330 (450)
T ss_pred CCccce-ecCCCccH----------HHHHHHHHHHHhhcCCeE
Confidence 433221 11111100 023566778899999987
No 53
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=93.12 E-value=7.8 Score=42.11 Aligned_cols=159 Identities=16% Similarity=0.183 Sum_probs=99.5
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCCHHH--HHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhh-cCceeeC-C
Q 006566 114 TKDVAGTVEEVMRIADQGADLVRITVQGKRE--ADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVN-P 189 (640)
Q Consensus 114 T~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~--A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~-v~KVRIN-P 189 (640)
...++..++=+..|.++|.+.+=+..|...+ .+.++.|++. +.+..++|=..-+++-...|+++ ++.|||- |
T Consensus 19 ~~s~~~k~~ia~~L~~~Gv~~IEvG~p~~~~~~~e~i~~i~~~----~~~~~i~~~~r~~~~di~~a~~~g~~~i~i~~~ 94 (365)
T TIGR02660 19 AFTAAEKLAIARALDEAGVDELEVGIPAMGEEERAVIRAIVAL----GLPARLMAWCRARDADIEAAARCGVDAVHISIP 94 (365)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHc----CCCcEEEEEcCCCHHHHHHHHcCCcCEEEEEEc
Confidence 3667888888899999999999999987654 4677777764 33445555444556666677777 8888863 3
Q ss_pred CCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCCChHHHHHHHHHHHHHH
Q 006566 190 GNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARIC 269 (640)
Q Consensus 190 GN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGdtp~gMVeSAle~~~i~ 269 (640)
-+=...+++| ..-.+..-+.+.+.|+.||++|..++++.-.++- .+| +-..++++-+
T Consensus 95 ~Sd~~~~~~~----------~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed~~r---------~~~----~~l~~~~~~~ 151 (365)
T TIGR02660 95 VSDLQIEAKL----------RKDRAWVLERLARLVSFARDRGLFVSVGGEDASR---------ADP----DFLVELAEVA 151 (365)
T ss_pred cCHHHHHHHh----------CcCHHHHHHHHHHHHHHHHhCCCEEEEeecCCCC---------CCH----HHHHHHHHHH
Confidence 2211111111 1112344555778999999999999887543322 133 3344555666
Q ss_pred HHCCCCcEEEEEEeCChhhHHHHHHHHHHHHH
Q 006566 270 RKLDFHNFLFSMKASNPVVMVQAYRLLVAEMY 301 (640)
Q Consensus 270 e~~~F~diviSmKsSn~~~mV~AyRlL~~~m~ 301 (640)
.+.|-+. |+++-+.=..+=..+..+++.+.
T Consensus 152 ~~~Ga~~--i~l~DT~G~~~P~~v~~lv~~l~ 181 (365)
T TIGR02660 152 AEAGADR--FRFADTVGILDPFSTYELVRALR 181 (365)
T ss_pred HHcCcCE--EEEcccCCCCCHHHHHHHHHHHH
Confidence 7778664 56777654444444555555543
No 54
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=92.92 E-value=1.6 Score=48.02 Aligned_cols=157 Identities=17% Similarity=0.189 Sum_probs=104.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecCC--------HHHHHHHHHHHHHhhcCCCCcceeec-------------cCCC
Q 006566 113 DTKDVAGTVEEVMRIADQGADLVRITVQG--------KREADACFEIKNSLVQKNYNIPLVAD-------------IHFA 171 (640)
Q Consensus 113 ~T~Dv~atv~Qi~rl~~aGceiVRvtvp~--------~~~A~~l~~I~~~L~~~g~~iPLVAD-------------IHF~ 171 (640)
.|+.....++.+.+++++|.+-|=+..++ .+..+.+.+||+.|.+.|..++.|+= .+-+
T Consensus 27 ~~~~~~~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e~~~~~~~lk~~L~~~GL~v~~v~~nl~~~~~~~~g~las~d 106 (382)
T TIGR02631 27 ATRTALDPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQERDQIVRRFKKALDETGLKVPMVTTNLFSHPVFKDGGFTSND 106 (382)
T ss_pred CCCCCcCHHHHHHHHHHhCCCEEEecccccCCCCCChhHHHHHHHHHHHHHHHhCCeEEEeeccccCCccccCCCCCCCC
Confidence 34555567788889999999999776322 22245688999999999999886552 1224
Q ss_pred H---HHHH--------HHhhh-cCceeeCCCCCCchhhhccccccc-hHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEee
Q 006566 172 P---SVAL--------RVAEC-FDKIRVNPGNFADRRAQFEQLEYT-DDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT 238 (640)
Q Consensus 172 ~---~~Al--------~Aa~~-v~KVRINPGN~~d~~k~F~~~eYt-deeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGv 238 (640)
+ +.|+ .|.+. +..|-+-||-.+. +|+ ..+|.+.+++..+.+..+.+.|+++|.-|+|++
T Consensus 107 ~~vR~~ai~~~kraId~A~eLGa~~v~v~~G~~g~--------~~~~~~d~~~a~~~~~e~L~~lae~A~~~G~GV~laL 178 (382)
T TIGR02631 107 RSVRRYALRKVLRNMDLGAELGAETYVVWGGREGA--------EYDGAKDVRAALDRMREALNLLAAYAEDQGYGLRFAL 178 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEccCCCCC--------cCccccCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEE
Confidence 5 2222 33344 7889999995543 233 234788899999999999999999887778887
Q ss_pred CCCCCcHhHHHHhCCChHHHHHHHHHHHHHHHHCCCCcE-EEEEEeCC
Q 006566 239 NHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNF-LFSMKASN 285 (640)
Q Consensus 239 NhGSLs~ril~ryGdtp~gMVeSAle~~~i~e~~~F~di-viSmKsSn 285 (640)
=. ++.+ +.+.-++.++-+.++++++.|-.|+ -+-+=...
T Consensus 179 Ep--~p~~------~~~~~ll~T~~~al~li~~v~~pn~vgl~lDvgH 218 (382)
T TIGR02631 179 EP--KPNE------PRGDILLPTVGHALAFIETLERPELFGLNPETGH 218 (382)
T ss_pred cc--CCCC------CCcceecCCHHHHHHHHHHcCCccceeEEEechh
Confidence 22 1111 1122356666777778888887773 45444443
No 55
>PRK15129 L-Ala-D/L-Glu epimerase; Provisional
Probab=92.82 E-value=1.5 Score=46.38 Aligned_cols=139 Identities=14% Similarity=0.164 Sum_probs=83.9
Q ss_pred cCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCCCcceeeccC--CCHHHH
Q 006566 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIH--FAPSVA 175 (640)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~iPLVADIH--F~~~~A 175 (640)
+||..+=+|++-.+....+.+..++++.++.+.|...+.+-+-...+.+.++.|++.+ + ++.|..|-| |++.-|
T Consensus 111 lGg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KlKv~~~~d~~~v~avr~~~---~-~~~l~vDaN~~w~~~~A 186 (321)
T PRK15129 111 IGITLPETVTTAQTVVIGTPEQMANSASALWQAGAKLLKVKLDNHLISERMVAIRSAV---P-DATLIVDANESWRAEGL 186 (321)
T ss_pred cCCCCCCceeEEEEecCCCHHHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHhC---C-CCeEEEECCCCCCHHHH
Confidence 6775444455443344456788999999999999999999885445778888888753 2 577888876 666666
Q ss_pred HHHhhhcCcee-------eCCCCCCchhhhc-cccccchHHH--HHHHhhh----------------HhhHHHHHHHHHH
Q 006566 176 LRVAECFDKIR-------VNPGNFADRRAQF-EQLEYTDDEY--QKELQHI----------------EEVFSPLVEKCKK 229 (640)
Q Consensus 176 l~Aa~~v~KVR-------INPGN~~d~~k~F-~~~eYtdeeY--~~Ele~I----------------~~~f~~lV~~~Ke 229 (640)
+..++.++... +.|.++..-++.- ..-...||+. .+.+.++ -.....+++.|++
T Consensus 187 ~~~~~~l~~~~i~~iEqP~~~~~~~~l~~~~~~~pia~dEs~~~~~d~~~~~~~~d~v~~k~~~~GGi~~a~~i~~~a~~ 266 (321)
T PRK15129 187 AARCQLLADLGVAMLEQPLPAQDDAALENFIHPLPICADESCHTRSSLKALKGRYEMVNIKLDKTGGLTEALALATEARA 266 (321)
T ss_pred HHHHHHHHhcCceEEECCCCCCcHHHHHHhccCCCEecCCCCCCHHHHHHHHhhCCEEEeCchhhCCHHHHHHHHHHHHH
Confidence 65544443332 2344432221111 1112223331 0111111 1245688999999
Q ss_pred cCCeEEEeeCC
Q 006566 230 YGRAVRIGTNH 240 (640)
Q Consensus 230 ~g~aIRIGvNh 240 (640)
+|+++=+|...
T Consensus 267 ~gi~~~~g~~~ 277 (321)
T PRK15129 267 QGFALMLGCML 277 (321)
T ss_pred cCCcEEEecch
Confidence 99999887643
No 56
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=92.80 E-value=4.1 Score=44.52 Aligned_cols=165 Identities=16% Similarity=0.140 Sum_probs=100.6
Q ss_pred eeEEEceeecCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEe-------cCCHHHH-HHHHHHHHHhhcCCC
Q 006566 89 RTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRIT-------VQGKREA-DACFEIKNSLVQKNY 160 (640)
Q Consensus 89 r~V~VG~v~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~rl~~aGceiVRvt-------vp~~~~A-~~l~~I~~~L~~~g~ 160 (640)
+.|.|=++.+=.+. |+ -.-.-.++.-++=+.+|.++|.+.|-++ +|.+.++ +.++.|++ + .+.
T Consensus 45 ~~V~I~DtTlRDG~----Q~--~g~~~s~e~Ki~ia~~L~~~GV~~IEvGs~vspk~vPqmad~~ev~~~i~~-~--~~~ 115 (347)
T PLN02746 45 KFVKIVEVGPRDGL----QN--EKNIVPTSVKVELIQRLVSSGLPVVEATSFVSPKWVPQLADAKDVMAAVRN-L--EGA 115 (347)
T ss_pred CceEEEECCCCccC----cC--CCCCCCHHHHHHHHHHHHHcCCCEEEECCCcCcccccccccHHHHHHHHHh-c--cCC
Confidence 45777665543221 11 1223567889999999999999999998 4555554 46777765 2 245
Q ss_pred CcceeeccCCCHHHHHHHhhh-cCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEee-
Q 006566 161 NIPLVADIHFAPSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT- 238 (640)
Q Consensus 161 ~iPLVADIHF~~~~Al~Aa~~-v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGv- 238 (640)
.++.++ . +.+=...|+++ ++.|.|-..- -+ . |... ....-.+..-+++.++|+.||++|..+|..+
T Consensus 116 ~~~~l~--~-n~~die~A~~~g~~~v~i~~s~-Sd-~--h~~~-----n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is 183 (347)
T PLN02746 116 RFPVLT--P-NLKGFEAAIAAGAKEVAVFASA-SE-S--FSKS-----NINCSIEESLVRYREVALAAKKHSIPVRGYVS 183 (347)
T ss_pred ceeEEc--C-CHHHHHHHHHcCcCEEEEEEec-CH-H--HHHH-----HhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEE
Confidence 555553 3 78888889998 9888875421 01 0 1110 0112234555667889999999999998443
Q ss_pred -CCCCCcHhHHHHhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEEeCC
Q 006566 239 -NHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASN 285 (640)
Q Consensus 239 -NhGSLs~ril~ryGdtp~gMVeSAle~~~i~e~~~F~diviSmKsSn 285 (640)
--|.- .+|.++ ++-.+++++-+.+.|-+. |+++-+.
T Consensus 184 ~~fg~p------~~~r~~---~~~l~~~~~~~~~~Gad~--I~l~DT~ 220 (347)
T PLN02746 184 CVVGCP------IEGPVP---PSKVAYVAKELYDMGCYE--ISLGDTI 220 (347)
T ss_pred eeecCC------ccCCCC---HHHHHHHHHHHHHcCCCE--EEecCCc
Confidence 22321 112222 344556777777888875 5666553
No 57
>PF05853 DUF849: Prokaryotic protein of unknown function (DUF849); InterPro: IPR008567 This family consists of several hypothetical prokaryotic proteins with no known function.; PDB: 3C6C_A 2Y7G_B 2Y7F_B 2Y7D_D 2Y7E_B 3LOT_A 3FA5_B 3NO5_C 3E02_A 3E49_B ....
Probab=92.73 E-value=0.84 Score=47.84 Aligned_cols=212 Identities=16% Similarity=0.211 Sum_probs=123.9
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecC-CH-----HHHHHHHHHHHHhhcCCCCccee----eccCCCHHHHHHHhhh--cC
Q 006566 116 DVAGTVEEVMRIADQGADLVRITVQ-GK-----READACFEIKNSLVQKNYNIPLV----ADIHFAPSVALRVAEC--FD 183 (640)
Q Consensus 116 Dv~atv~Qi~rl~~aGceiVRvtvp-~~-----~~A~~l~~I~~~L~~~g~~iPLV----ADIHF~~~~Al~Aa~~--v~ 183 (640)
-.+..+++..+|.+||+-+|-+-+- +. -+++...++.+.+|++..++++= +-..+++.-=+..++. -|
T Consensus 24 tpeEia~~A~~c~~AGAa~vH~H~R~~~~G~~s~d~~~~~e~~~~IR~~~pd~iv~~Ttg~~~~~~~~~R~~~v~~~~pd 103 (272)
T PF05853_consen 24 TPEEIAADAVACYEAGAAIVHIHARDDEDGRPSLDPELYAEVVEAIRAACPDLIVQPTTGGGGGPDPEERLAHVEAWKPD 103 (272)
T ss_dssp SHHHHHHHHHHHHHHTESEEEE-EE-TTTS-EE--HHHHHHHHHHHHHHSTTSEEEEESSTTTTSGHHHHCTHHHHH--S
T ss_pred CHHHHHHHHHHHHHcCCcEEEeecCCCCCCCcCCCHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCHHHHHHHHHhcCCC
Confidence 4688999999999999999999987 33 45677777777777777777665 4466676444444443 56
Q ss_pred ceeeCCC--CCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCCChHHHHHH
Q 006566 184 KIRVNPG--NFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVES 261 (640)
Q Consensus 184 KVRINPG--N~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGdtp~gMVeS 261 (640)
-.=+|+| |++.....|.+- .+...++++.|+|+|+..=|++ . +| ++++.
T Consensus 104 ~asl~~gs~n~~~~~~~~~n~--------------~~~~~~~~~~~~e~Gi~pe~ev----~----------d~-~~l~~ 154 (272)
T PF05853_consen 104 MASLNPGSMNFGTRDRVYINT--------------PADARELARRMRERGIKPEIEV----F----------DP-GHLRN 154 (272)
T ss_dssp EEEEE-S-EEESGGCSEE-----------------HHHHHHHHHHHHHTT-EEEEEE----S----------SH-HHHHH
T ss_pred eEEecccccccccCCceecCC--------------HHHHHHHHHHHHHcCCeEEEEE----E----------cH-HHHHH
Confidence 6778999 444111112211 2346778999999999999998 2 22 66665
Q ss_pred HHHHHH--HHHHCCCCcEEEEEEeCChhhHHHHHHHHHHHHHHcCCCcceEEEeecCCCCCcceeehHHHHHHHhhhcCC
Q 006566 262 AFEFAR--ICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLG 339 (640)
Q Consensus 262 Ale~~~--i~e~~~F~diviSmKsSn~~~mV~AyRlL~~~m~~~g~dyPLHLGVTEAG~gedGrIKSAiGIG~LL~DGIG 339 (640)
+..+++ ++..--+-++++..... ..-..+.+..+...+.. ..++.++=.|...--....|+..|.=.-=|+.
T Consensus 155 ~~~l~~~G~l~~p~~~~~vlG~~~g-~~~~~~~l~~~l~~l~~-----~~~w~v~~~g~~~~~~~~~Ai~~GghvRVGlE 228 (272)
T PF05853_consen 155 ARRLIEKGLLPGPLLVNFVLGVPGG-MPATPENLLAMLDMLPE-----GAPWSVCGIGRNQWPLLAAAIAMGGHVRVGLE 228 (272)
T ss_dssp HHHHHHTTSS-SSEEEEEEES-TTS---S-HHHHHHHHHHHHH-----TEEEEEEE-GGGHHHHHHHHHHTT-EEEESTT
T ss_pred HHHHHHCCCCCCCeEEEEcccCCCC-CCCCHHHHHHHHHhcCC-----CCcEEEEccchhhHHHHHHHHHcCCceEEecC
Confidence 555433 22222223555544432 13344555555666544 55666766665556677788888887888888
Q ss_pred cEEEeecCC---CCchhhHHHHHHHh
Q 006566 340 DTIRVSLTE---PPEKEIDPCRRLAN 362 (640)
Q Consensus 340 DTIRVSLTe---dP~~Ei~va~~ILq 362 (640)
|++...--+ +-.+-|.-+.+|++
T Consensus 229 D~~~~~~G~~a~sNaelV~~a~~ia~ 254 (272)
T PF05853_consen 229 DNLYLPDGELAPSNAELVERAVRIAR 254 (272)
T ss_dssp T-SEEETTEE-S-HHHHHHHHHHHHH
T ss_pred ccccCCCCCCCcCHHHHHHHHHHHHH
Confidence 888774311 11233566666666
No 58
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=92.66 E-value=9.5 Score=38.65 Aligned_cols=137 Identities=15% Similarity=0.103 Sum_probs=85.3
Q ss_pred HHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCCCcceee----cc---C----CCH----------HHHHHHhh-h
Q 006566 124 VMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVA----DI---H----FAP----------SVALRVAE-C 181 (640)
Q Consensus 124 i~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~iPLVA----DI---H----F~~----------~~Al~Aa~-~ 181 (640)
+.+++++|-+-|=+..|.. ..++++++.|.+.|..++..+ |. + ++| +-++..++ .
T Consensus 21 l~~~a~~Gf~~VEl~~~~~---~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~l 97 (258)
T PRK09997 21 FEKAAQCGFRGVEFMFPYD---YDIEELKQVLASNKLEHTLHNLPAGDWAAGERGIACIPGREEEFRDGVAAAIRYARAL 97 (258)
T ss_pred HHHHHHhCCCEEEEcCCCC---CCHHHHHHHHHHcCCcEEEEcCCCCccccCcCccccCCCcHHHHHHHHHHHHHHHHHh
Confidence 5666777887777765543 357788888888899887543 11 1 011 12222233 3
Q ss_pred -cCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEee---CCCCCcHhHHHHhCCChHH
Q 006566 182 -FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT---NHGSLSDRIMSYYGDSPRG 257 (640)
Q Consensus 182 -v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGv---NhGSLs~ril~ryGdtp~g 257 (640)
+..|++.+|.... .+++++ ..+...+.+..+.+.|+++|+. ||+ ||-.. |.-
T Consensus 98 ga~~i~~~~g~~~~--------~~~~~~---~~~~~~~~l~~l~~~a~~~Gv~--l~lE~~n~~~~-----------~~~ 153 (258)
T PRK09997 98 GNKKINCLVGKTPA--------GFSSEQ---IHATLVENLRYAANMLMKEDIL--LLIEPINHFDI-----------PGF 153 (258)
T ss_pred CCCEEEECCCCCCC--------CCCHHH---HHHHHHHHHHHHHHHHHHcCCE--EEEEeCCCcCC-----------CCC
Confidence 7889998886532 122333 2466677888999999998855 576 66111 111
Q ss_pred HHHHHHHHHHHHHHCCCCcEEEEEEeCChh
Q 006566 258 MVESAFEFARICRKLDFHNFLFSMKASNPV 287 (640)
Q Consensus 258 MVeSAle~~~i~e~~~F~diviSmKsSn~~ 287 (640)
++.++-+.++++++.+=.++.+-+-..+..
T Consensus 154 ~~~~~~~~~~ll~~v~~~~v~l~~D~~h~~ 183 (258)
T PRK09997 154 HLTGTRQALKLIDDVGCCNLKIQYDIYHMQ 183 (258)
T ss_pred ccCCHHHHHHHHHHhCCCCEEEEeEHHHhh
Confidence 334555667788888888888888777654
No 59
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=92.58 E-value=13 Score=37.84 Aligned_cols=170 Identities=12% Similarity=0.157 Sum_probs=103.6
Q ss_pred HHHHHHHHHHcCCCEEEEecCCH-------HHHHHHHHHHHHhhcC-CCCcceeecc-----CCCH-----------HHH
Q 006566 120 TVEEVMRIADQGADLVRITVQGK-------READACFEIKNSLVQK-NYNIPLVADI-----HFAP-----------SVA 175 (640)
Q Consensus 120 tv~Qi~rl~~aGceiVRvtvp~~-------~~A~~l~~I~~~L~~~-g~~iPLVADI-----HF~~-----------~~A 175 (640)
.-+.+..++++|-+.|=+..... ...+.++++++.+.+. +..+.+.+.- |.++ +..
T Consensus 12 l~~~l~~a~~~G~d~vEl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~i 91 (279)
T cd00019 12 LENALKRAKEIGFDTVAMFLGNPRSWLSRPLKKERAEKFKAIAEEGPSICLSVHAPYLINLASPDKEKREKSIERLKDEI 91 (279)
T ss_pred HHHHHHHHHHcCCCEEEEEcCCCCccCCCCCCHHHHHHHHHHHHHcCCCcEEEEcCceeccCCCCHHHHHHHHHHHHHHH
Confidence 34566777889998886654222 1236777788777777 6555555432 3342 222
Q ss_pred HHHhhh-cCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCCC
Q 006566 176 LRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDS 254 (640)
Q Consensus 176 l~Aa~~-v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGdt 254 (640)
..|.+. +..|++.||+.... ..++..+...+.+.++++.|+++|+.+-|=. |+.-.
T Consensus 92 ~~A~~lG~~~v~~~~g~~~~~------------~~~~~~~~~~~~l~~l~~~a~~~gi~l~lEn-~~~~~---------- 148 (279)
T cd00019 92 ERCEELGIRLLVFHPGSYLGQ------------SKEEGLKRVIEALNELIDKAETKGVVIALET-MAGQG---------- 148 (279)
T ss_pred HHHHHcCCCEEEECCCCCCCC------------CHHHHHHHHHHHHHHHHHhccCCCCEEEEeC-CCCCC----------
Confidence 234444 88899999986531 1234456777889999999999987664433 33211
Q ss_pred hHHHHHHHHHHHHHHHHCC-CCcEEEEEEeCChhh----------HHHHHHHHHHHHHHcCCCcceEEEeecC
Q 006566 255 PRGMVESAFEFARICRKLD-FHNFLFSMKASNPVV----------MVQAYRLLVAEMYVHGWDYPLHLGVTEA 316 (640)
Q Consensus 255 p~gMVeSAle~~~i~e~~~-F~diviSmKsSn~~~----------mV~AyRlL~~~m~~~g~dyPLHLGVTEA 316 (640)
--++.++-+..+++++.+ -.++-+-+=..|... ..+..+.+.++ .|.+|..|+-+-.+
T Consensus 149 -~~~~~t~~~~~~li~~v~~~~~~g~~lD~~h~~~~g~~~~~~~~~~~~l~~~~~~---i~~~~i~~vHikD~ 217 (279)
T cd00019 149 -NEIGSSFEELKEIIDLIKEKPRVGVCIDTCHIFAAGYDISTVEGFEKVLEEFDKV---IGLEYLKAIHLNDS 217 (279)
T ss_pred -CCCCCCHHHHHHHHHhcCCCCCeEEEEEhhhHHhccCCCCCHHHHHHHHHHHHHH---hChhheeEEEEEcC
Confidence 124556677888889888 778888877777431 22233333333 24456677776554
No 60
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=92.50 E-value=5 Score=43.61 Aligned_cols=158 Identities=14% Similarity=0.151 Sum_probs=100.9
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecC--CHHHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhh-cCceee-CC
Q 006566 114 TKDVAGTVEEVMRIADQGADLVRITVQ--GKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRV-NP 189 (640)
Q Consensus 114 T~Dv~atv~Qi~rl~~aGceiVRvtvp--~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~-v~KVRI-NP 189 (640)
...++.-++=+..|.++|.+.+=+..| +.++.+.++.|.+. +.+..++|=+--+++-...|+++ ++.||| -|
T Consensus 18 ~~s~~~k~~ia~~L~~~Gv~~IEvG~p~~~~~~~e~i~~i~~~----~~~~~v~~~~r~~~~di~~a~~~g~~~i~i~~~ 93 (363)
T TIGR02090 18 SLTVEQKVEIARKLDELGVDVIEAGFPIASEGEFEAIKKISQE----GLNAEICSLARALKKDIDKAIDCGVDSIHTFIA 93 (363)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCCChHHHHHHHHHHhc----CCCcEEEEEcccCHHHHHHHHHcCcCEEEEEEc
Confidence 456788888899999999999999765 45677777777763 66778887666677777788888 999997 34
Q ss_pred CCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCCChHHHHHHHHHHHHHH
Q 006566 190 GNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARIC 269 (640)
Q Consensus 190 GN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGdtp~gMVeSAle~~~i~ 269 (640)
-|=...+++|. .-.+..-+++.+.++.||++|..++++.-..+ + .+|+- .+++++.+
T Consensus 94 ~Sd~~~~~~~~----------~~~~~~~~~~~~~i~~ak~~G~~v~~~~eda~-------r--~~~~~----l~~~~~~~ 150 (363)
T TIGR02090 94 TSPIHLKYKLK----------KSRDEVLEKAVEAVEYAKEHGLIVEFSAEDAT-------R--TDIDF----LIKVFKRA 150 (363)
T ss_pred CCHHHHHHHhC----------CCHHHHHHHHHHHHHHHHHcCCEEEEEEeecC-------C--CCHHH----HHHHHHHH
Confidence 32111111111 11233446688899999999999988863332 1 24433 34455566
Q ss_pred HHCCCCcEEEEEEeCChhhHHHHHHHHHHHH
Q 006566 270 RKLDFHNFLFSMKASNPVVMVQAYRLLVAEM 300 (640)
Q Consensus 270 e~~~F~diviSmKsSn~~~mV~AyRlL~~~m 300 (640)
.+.|-+. |+++-+.=..+=+..+.+++.+
T Consensus 151 ~~~g~~~--i~l~DT~G~~~P~~v~~li~~l 179 (363)
T TIGR02090 151 EEAGADR--INIADTVGVLTPQKMEELIKKL 179 (363)
T ss_pred HhCCCCE--EEEeCCCCccCHHHHHHHHHHH
Confidence 6778774 5666654333333333344443
No 61
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=92.46 E-value=6.8 Score=40.81 Aligned_cols=163 Identities=14% Similarity=0.115 Sum_probs=94.6
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecC--CHHHHHHHHHHHHHhhcCCC-Ccceee-------ccCCCH-HHHHHHhhh-
Q 006566 114 TKDVAGTVEEVMRIADQGADLVRITVQ--GKREADACFEIKNSLVQKNY-NIPLVA-------DIHFAP-SVALRVAEC- 181 (640)
Q Consensus 114 T~Dv~atv~Qi~rl~~aGceiVRvtvp--~~~~A~~l~~I~~~L~~~g~-~iPLVA-------DIHF~~-~~Al~Aa~~- 181 (640)
...++.-++=+..|.++|.+.|-+..| +.++.+.++.+++. +. +.++++ ||...+ +-...|+++
T Consensus 16 ~~s~e~k~~i~~~L~~~Gv~~IE~G~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~i~~~~~~~~~~a~~~g 91 (273)
T cd07941 16 SFSVEDKLRIARKLDELGVDYIEGGWPGSNPKDTEFFARAKKL----KLKHAKLAAFGSTRRAGVKAEEDPNLQALLEAG 91 (273)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEecCCcCCHHHHHHHHHHHHc----CCCCcEEEEEecccccCCCccchHHHHHHHhCC
Confidence 466788888889999999999999765 56677777666653 22 344443 444322 233456667
Q ss_pred cCceee-CCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCCChHHHHH
Q 006566 182 FDKIRV-NPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVE 260 (640)
Q Consensus 182 v~KVRI-NPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGdtp~gMVe 260 (640)
++.||| .|..=...++ ..-.| .+..-+++.+.++.||++|..++.+.= .+++ .|-.+| +
T Consensus 92 ~~~i~i~~~~sd~~~~~---~~~~~-------~~~~~~~~~~~i~~ak~~G~~v~~~~~--~~~d----~~~~~~----~ 151 (273)
T cd07941 92 TPVVTIFGKSWDLHVTE---ALGTT-------LEENLAMIRDSVAYLKSHGREVIFDAE--HFFD----GYKANP----E 151 (273)
T ss_pred CCEEEEEEcCCHHHHHH---HcCCC-------HHHHHHHHHHHHHHHHHcCCeEEEeEE--eccc----cCCCCH----H
Confidence 888986 3322111111 11112 233345678999999999987766321 1111 111234 4
Q ss_pred HHHHHHHHHHHCCCCcEEEEEEeCChhhHHHHHHHHHHHHHH
Q 006566 261 SAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYV 302 (640)
Q Consensus 261 SAle~~~i~e~~~F~diviSmKsSn~~~mV~AyRlL~~~m~~ 302 (640)
-..++++-+.+.|-+. |+++-|.=..+=+..+.+++.+.+
T Consensus 152 ~~~~~~~~~~~~g~~~--i~l~DT~G~~~P~~v~~lv~~l~~ 191 (273)
T cd07941 152 YALATLKAAAEAGADW--LVLCDTNGGTLPHEIAEIVKEVRE 191 (273)
T ss_pred HHHHHHHHHHhCCCCE--EEEecCCCCCCHHHHHHHHHHHHH
Confidence 4456666677788874 677765544444445555555543
No 62
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=92.32 E-value=1.1 Score=49.73 Aligned_cols=107 Identities=15% Similarity=0.204 Sum_probs=83.8
Q ss_pred CCHHHHHHHHHHHHHc--CCCEEEEecCCH-----HHHHHHHHHHHHhhcCCCCcceeeccCC-CHHHHHHHhh--hcCc
Q 006566 115 KDVAGTVEEVMRIADQ--GADLVRITVQGK-----READACFEIKNSLVQKNYNIPLVADIHF-APSVALRVAE--CFDK 184 (640)
Q Consensus 115 ~Dv~atv~Qi~rl~~a--GceiVRvtvp~~-----~~A~~l~~I~~~L~~~g~~iPLVADIHF-~~~~Al~Aa~--~v~K 184 (640)
-|.+.+++-+.+|.++ +..+ .|-=|=. ++-+.+.+++++++++|+++|+++|=.. ++.-+...++ +++-
T Consensus 245 ~~~~~ai~~l~~l~~~~~~~~~-~iEqPv~~~d~~~~~e~la~Lr~~~~~~~~~vPI~aDEs~~t~~d~~~~i~~~a~d~ 323 (408)
T TIGR01502 245 VDIKAMADYIQTLAEAAKPFHL-RIEGPMDVGSRQAQIEAMADLRAELDGRGVDAEIVADEWCNTVEDVKFFTDAKAGHM 323 (408)
T ss_pred CCHHHHHHHHHHHHHhCccCCe-EEecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEecCCCCCHHHHHHHHHhCCCCE
Confidence 4778888888888875 3354 7775543 2488999999999999999999999774 4777776665 4999
Q ss_pred eeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEee--CCCCCc
Q 006566 185 IRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT--NHGSLS 244 (640)
Q Consensus 185 VRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGv--NhGSLs 244 (640)
|.|-+...|.-.+ ..++++.|+++|+++=+|- |.++++
T Consensus 324 v~iK~~k~GGIt~----------------------a~kia~lA~~~Gi~~~~g~~~~es~I~ 363 (408)
T TIGR01502 324 VQIKTPDVGGVNN----------------------IARAIMYCKANGMGAYVGGTCNETNRS 363 (408)
T ss_pred EEeCccccCCHHH----------------------HHHHHHHHHHcCCEEEEeCCCCCCHHH
Confidence 9999999998543 6789999999999998874 355554
No 63
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=91.85 E-value=1.4 Score=50.05 Aligned_cols=100 Identities=12% Similarity=0.234 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHcCCCEEEEec---CCHHHHHHHHHHHHHhhcCCC-CcceeeccCCCHHHHHHHhhh-cCceee--CCCC
Q 006566 119 GTVEEVMRIADQGADLVRITV---QGKREADACFEIKNSLVQKNY-NIPLVADIHFAPSVALRVAEC-FDKIRV--NPGN 191 (640)
Q Consensus 119 atv~Qi~rl~~aGceiVRvtv---p~~~~A~~l~~I~~~L~~~g~-~iPLVADIHF~~~~Al~Aa~~-v~KVRI--NPGN 191 (640)
...+.+..|.++|+++|=|.. -+....+.+++||+. + ++|++|=-=.+++-|..++++ +|-|++ -||-
T Consensus 241 ~~~~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~~-----~~~~~v~aG~V~t~~~a~~~~~aGad~I~vg~g~Gs 315 (495)
T PTZ00314 241 EDIERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKSN-----YPHVDIIAGNVVTADQAKNLIDAGADGLRIGMGSGS 315 (495)
T ss_pred HHHHHHHHHHHCCCCEEEEecCCCCchHHHHHHHHHHhh-----CCCceEEECCcCCHHHHHHHHHcCCCEEEECCcCCc
Confidence 458999999999999999998 555667788888885 4 599999555779999999999 999995 5885
Q ss_pred CCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeE
Q 006566 192 FADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAV 234 (640)
Q Consensus 192 ~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aI 234 (640)
+.-.+. ....-+. --..+..+.+.|+++|+|+
T Consensus 316 ~~~t~~-~~~~g~p----------~~~ai~~~~~~~~~~~v~v 347 (495)
T PTZ00314 316 ICITQE-VCAVGRP----------QASAVYHVARYARERGVPC 347 (495)
T ss_pred ccccch-hccCCCC----------hHHHHHHHHHHHhhcCCeE
Confidence 432210 0000000 0123566778899999887
No 64
>PRK09389 (R)-citramalate synthase; Provisional
Probab=91.70 E-value=10 Score=43.10 Aligned_cols=159 Identities=12% Similarity=0.121 Sum_probs=101.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecC--CHHHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhh-cCceee-C
Q 006566 113 DTKDVAGTVEEVMRIADQGADLVRITVQ--GKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRV-N 188 (640)
Q Consensus 113 ~T~Dv~atv~Qi~rl~~aGceiVRvtvp--~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~-v~KVRI-N 188 (640)
-..+++.-++=++.|.++|.+.+=+..| +.++.+.++.|.+. +.+.-++|-..-..+-...|+++ ++.|+| .
T Consensus 19 ~~~s~e~K~~ia~~L~~~Gv~~IE~G~p~~~~~d~e~v~~i~~~----~~~~~i~a~~r~~~~di~~a~~~g~~~v~i~~ 94 (488)
T PRK09389 19 VSLTPEEKLEIARKLDELGVDVIEAGSAITSEGEREAIKAVTDE----GLNAEICSFARAVKVDIDAALECDVDSVHLVV 94 (488)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEEeCCcCCHHHHHHHHHHHhc----CCCcEEEeecccCHHHHHHHHhCCcCEEEEEE
Confidence 3567888888999999999999999877 78889999888863 44566666555445555667777 777774 3
Q ss_pred CCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCCChHHHHHHHHHHHHH
Q 006566 189 PGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARI 268 (640)
Q Consensus 189 PGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGdtp~gMVeSAle~~~i 268 (640)
|-+=...+++ +..-.+.+-+.+.+.|+.||++|..++++.-.+ +.++ .+-+++.++-
T Consensus 95 ~~Sd~h~~~~----------l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~ed~----------~r~~---~~~l~~~~~~ 151 (488)
T PRK09389 95 PTSDLHIEYK----------LKKTREEVLETAVEAVEYAKDHGLIVELSGEDA----------SRAD---LDFLKELYKA 151 (488)
T ss_pred ccCHHHHHHH----------hCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeeC----------CCCC---HHHHHHHHHH
Confidence 3322111111 222234455667788999999999888865322 2222 2445556666
Q ss_pred HHHCCCCcEEEEEEeCChhhHHHHHHHHHHHH
Q 006566 269 CRKLDFHNFLFSMKASNPVVMVQAYRLLVAEM 300 (640)
Q Consensus 269 ~e~~~F~diviSmKsSn~~~mV~AyRlL~~~m 300 (640)
+.+.|-+. |.+..+.=..+=..+..++..+
T Consensus 152 ~~~~Ga~~--i~l~DTvG~~~P~~~~~lv~~l 181 (488)
T PRK09389 152 GIEAGADR--ICFCDTVGILTPEKTYELFKRL 181 (488)
T ss_pred HHhCCCCE--EEEecCCCCcCHHHHHHHHHHH
Confidence 67778775 5666764333333444444444
No 65
>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.
Probab=91.37 E-value=1 Score=45.21 Aligned_cols=66 Identities=21% Similarity=0.261 Sum_probs=46.6
Q ss_pred CCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecC--CHHHHHHHHHHHHHhhcCCCCcceee
Q 006566 100 SEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQ--GKREADACFEIKNSLVQKNYNIPLVA 166 (640)
Q Consensus 100 G~~PI~VQSMt~t~T~Dv~atv~Qi~rl~~aGceiVRvtvp--~~~~A~~l~~I~~~L~~~g~~iPLVA 166 (640)
++..|.+-.-....|-+.+...+.+.++...||||+|+++. +.+|.-.|-+...+++... ++|+||
T Consensus 112 ~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKla~~~~~~~D~~~ll~~~~~~~~~~-~~p~i~ 179 (225)
T cd00502 112 GNTKIIGSYHDFSGTPSDEELVSRLEKMAALGADIVKIAVMANSIEDNLRLLKFTRQVKNLY-DIPLIA 179 (225)
T ss_pred CCCEEEEEeccCCCCcCHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHHHHHHHHHhcC-CCCEEE
Confidence 34445554445555668888999999999999999999976 4566666666666655443 677754
No 66
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=90.69 E-value=12 Score=38.94 Aligned_cols=148 Identities=16% Similarity=0.126 Sum_probs=96.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCHHH-----------HHHHHHHHHHhhcCCCCcceeeccCC-CHHHHHHHhhh-
Q 006566 115 KDVAGTVEEVMRIADQGADLVRITVQGKRE-----------ADACFEIKNSLVQKNYNIPLVADIHF-APSVALRVAEC- 181 (640)
Q Consensus 115 ~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~-----------A~~l~~I~~~L~~~g~~iPLVADIHF-~~~~Al~Aa~~- 181 (640)
.+.+..++=+..|.++|-|+|=+..|+..+ .+.++.|.+.. +.+.++-..++.+. +......|.++
T Consensus 17 f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~l~~a~~~g 95 (266)
T cd07944 17 FGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDS-KGNTKIAVMVDYGNDDIDLLEPASGSV 95 (266)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhh-ccCCEEEEEECCCCCCHHHHHHHhcCC
Confidence 566777777888999999999999876632 57777777642 23466666667774 55555666777
Q ss_pred cCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCCChHHHHHH
Q 006566 182 FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVES 261 (640)
Q Consensus 182 v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGdtp~gMVeS 261 (640)
++-|||- .... --++..+.++.+|++|..++++.-.-+ +-+|+-+
T Consensus 96 v~~iri~-----~~~~------------------~~~~~~~~i~~ak~~G~~v~~~~~~a~---------~~~~~~~--- 140 (266)
T cd07944 96 VDMIRVA-----FHKH------------------EFDEALPLIKAIKEKGYEVFFNLMAIS---------GYSDEEL--- 140 (266)
T ss_pred cCEEEEe-----cccc------------------cHHHHHHHHHHHHHCCCeEEEEEEeec---------CCCHHHH---
Confidence 8999984 1111 123478899999999998887763332 1244433
Q ss_pred HHHHHHHHHHCCCCcEEEEEEeCChhhHHHHHHHHHHHHH
Q 006566 262 AFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMY 301 (640)
Q Consensus 262 Ale~~~i~e~~~F~diviSmKsSn~~~mV~AyRlL~~~m~ 301 (640)
.++++.+.+.|-+ .|+++-|.=..+-+..+.+++.+.
T Consensus 141 -~~~~~~~~~~g~~--~i~l~DT~G~~~P~~v~~lv~~l~ 177 (266)
T cd07944 141 -LELLELVNEIKPD--VFYIVDSFGSMYPEDIKRIISLLR 177 (266)
T ss_pred -HHHHHHHHhCCCC--EEEEecCCCCCCHHHHHHHHHHHH
Confidence 4566667777876 467777654444444444554443
No 67
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=90.60 E-value=4.6 Score=42.28 Aligned_cols=169 Identities=18% Similarity=0.169 Sum_probs=97.7
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEe-------cCCHHHHHHH-HHHHHHhhcCCCCcceeeccCCCHHHHHHHhhh-cCc
Q 006566 114 TKDVAGTVEEVMRIADQGADLVRIT-------VQGKREADAC-FEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDK 184 (640)
Q Consensus 114 T~Dv~atv~Qi~rl~~aGceiVRvt-------vp~~~~A~~l-~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~-v~K 184 (640)
...++.-++=++.|.++|.+.|-+. +|.+.+++.+ +.|.+ ..+..+-..+ -+.+=...|+++ ++.
T Consensus 16 ~~s~e~K~~i~~~L~~~Gv~~IEvGs~~~~~~~p~~~d~~~~~~~l~~---~~~~~~~~~~---~~~~dv~~A~~~g~~~ 89 (274)
T cd07938 16 FIPTEDKIELIDALSAAGLRRIEVTSFVSPKWVPQMADAEEVLAGLPR---RPGVRYSALV---PNLRGAERALAAGVDE 89 (274)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCHHHHHhhccc---CCCCEEEEEC---CCHHHHHHHHHcCcCE
Confidence 4567888888999999999999999 7777766632 22221 1233332222 256666777777 888
Q ss_pred eee-CCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeC--CCCCcHhHHHHhCCChHHHHHH
Q 006566 185 IRV-NPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTN--HGSLSDRIMSYYGDSPRGMVES 261 (640)
Q Consensus 185 VRI-NPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvN--hGSLs~ril~ryGdtp~gMVeS 261 (640)
|+| -|-+=....+++. .-.+...++..+.++.||++|.-+++.+- .|. ++ .|.++ .+-
T Consensus 90 i~i~~~~Sd~~~~~~~~----------~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~-~~-----~~~~~---~~~ 150 (274)
T cd07938 90 VAVFVSASETFSQKNIN----------CSIAESLERFEPVAELAKAAGLRVRGYVSTAFGC-PY-----EGEVP---PER 150 (274)
T ss_pred EEEEEecCHHHHHHHcC----------CCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecC-CC-----CCCCC---HHH
Confidence 884 2333221121111 11345566778899999999998886652 221 11 12222 345
Q ss_pred HHHHHHHHHHCCCCcEEEEEEeCChhhHHHHHHHHHHHHHHcCC-CcceE
Q 006566 262 AFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGW-DYPLH 310 (640)
Q Consensus 262 Ale~~~i~e~~~F~diviSmKsSn~~~mV~AyRlL~~~m~~~g~-dyPLH 310 (640)
.+++++.+.+.|-+. |+++-|.=..+=+.++.++..+.++ + +.|++
T Consensus 151 ~~~~~~~~~~~Ga~~--i~l~DT~G~~~P~~v~~lv~~l~~~-~~~~~i~ 197 (274)
T cd07938 151 VAEVAERLLDLGCDE--ISLGDTIGVATPAQVRRLLEAVLER-FPDEKLA 197 (274)
T ss_pred HHHHHHHHHHcCCCE--EEECCCCCccCHHHHHHHHHHHHHH-CCCCeEE
Confidence 566777777888874 5666654333334444445444433 3 34553
No 68
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=90.41 E-value=2.2 Score=45.16 Aligned_cols=197 Identities=17% Similarity=0.270 Sum_probs=114.9
Q ss_pred eeecCCCCce-EEEeccCCCCCCHHHHHHHHHHHHHcC----CCEEEEe------------c--CC-HHHHHHHHHHHHH
Q 006566 95 NVAIGSEHPI-RVQTMTTNDTKDVAGTVEEVMRIADQG----ADLVRIT------------V--QG-KREADACFEIKNS 154 (640)
Q Consensus 95 ~v~IGG~~PI-~VQSMt~t~T~Dv~atv~Qi~rl~~aG----ceiVRvt------------v--p~-~~~A~~l~~I~~~ 154 (640)
++.|||+.|+ .|==-+...+.+ -+.+=.+.+.++| ..+++=+ . ++ .+--+-|+++|++
T Consensus 2 ~~~ig~~~~~~~iAGPC~vEs~e--~~~~~A~~lk~~~~~~~~~~~fK~sf~KapRTSp~sFqG~G~eeGL~~L~~vk~~ 79 (264)
T PRK05198 2 DIEVGNDLPFFLIAGPCVIESRD--LALRIAEHLKEITDKLGIPYVFKASFDKANRSSIHSFRGPGLEEGLKILQEVKET 79 (264)
T ss_pred CeeeCCCCceEEEecCCcccCHH--HHHHHHHHHHHHHHhcCCCeEEeccccCCCCCCCCCCCCCChHHHHHHHHHHHHH
Confidence 5778888655 333333333333 2334444555544 4444431 1 24 4677888899986
Q ss_pred hhcCCCCcceeeccCCCHHHHHHHhhhcCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeE
Q 006566 155 LVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAV 234 (640)
Q Consensus 155 L~~~g~~iPLVADIHF~~~~Al~Aa~~v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aI 234 (640)
+.+|+|.|||= +.-+..+++++|=+-|--=|.-. .+|++.+.+.|.|+
T Consensus 80 -----~GlpvvTeV~~-~~~~~~v~~~~DilQIgArn~rn--------------------------~~LL~a~g~t~kpV 127 (264)
T PRK05198 80 -----FGVPVLTDVHE-PEQAAPVAEVVDVLQIPAFLCRQ--------------------------TDLLVAAAKTGKVV 127 (264)
T ss_pred -----HCCceEEEeCC-HHHHHHHHhhCcEEEECchhcch--------------------------HHHHHHHhccCCeE
Confidence 99999999995 55556777899999996655533 25888888889998
Q ss_pred EEeeCCCCCcHhHHHHhC--CChHHHHHHHHHHHHHHHHCCCCcEEEEEEeCChh--hHHHHHHHHHHHHHHcCCCcceE
Q 006566 235 RIGTNHGSLSDRIMSYYG--DSPRGMVESAFEFARICRKLDFHNFLFSMKASNPV--VMVQAYRLLVAEMYVHGWDYPLH 310 (640)
Q Consensus 235 RIGvNhGSLs~ril~ryG--dtp~gMVeSAle~~~i~e~~~F~diviSmKsSn~~--~mV~AyRlL~~~m~~~g~dyPLH 310 (640)
+=|| | -||+.|.-+|.. +...|=+||++-=--+..- ..+--+|- +..|.+ ..+|+-
T Consensus 128 --------~lKr-----G~~~t~~e~~~aaey----i~~~Gn~~vilcERG~tf~y~r~~~D~~~-vp~~k~--~~lPVi 187 (264)
T PRK05198 128 --------NIKK-----GQFLAPWDMKNVVDK----VREAGNDKIILCERGTSFGYNNLVVDMRG-LPIMRE--TGAPVI 187 (264)
T ss_pred --------EecC-----CCcCCHHHHHHHHHH----HHHcCCCeEEEEeCCCCcCCCCeeechhh-hHHHhh--CCCCEE
Confidence 3333 5 589887766543 3345555655532222100 00001111 123333 449998
Q ss_pred EEeecC-----------CCCCc---ceeehHHHHHHHhhhcCCcEEEeecCCCCch
Q 006566 311 LGVTEA-----------GEGED---GRMKSAIGIGTLLQDGLGDTIRVSLTEPPEK 352 (640)
Q Consensus 311 LGVTEA-----------G~ged---GrIKSAiGIG~LL~DGIGDTIRVSLTedP~~ 352 (640)
.=.|-+ |.-.+ -.-++|+..|+ |++.+-.-.||++
T Consensus 188 ~DpSHsvq~pg~~~~~s~G~r~~v~~la~AAvA~Ga-------dGl~iEvHpdP~~ 236 (264)
T PRK05198 188 FDATHSVQLPGGQGGSSGGQREFVPVLARAAVAVGV-------AGLFIETHPDPDN 236 (264)
T ss_pred EeCCccccCCCCCCCCCCCcHHHHHHHHHHHHHcCC-------CEEEEEeCCCccc
Confidence 888886 21111 12245555554 8888887777765
No 69
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=90.38 E-value=2.7 Score=41.16 Aligned_cols=90 Identities=17% Similarity=0.225 Sum_probs=70.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCCC-cceeeccCCCHHHHHHHhhh-cCceeeCCCCC
Q 006566 115 KDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYN-IPLVADIHFAPSVALRVAEC-FDKIRVNPGNF 192 (640)
Q Consensus 115 ~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~-iPLVADIHF~~~~Al~Aa~~-v~KVRINPGN~ 192 (640)
.|.+..++.++.+.++|..+|.++.-+....+.++.|+++ ++ +++-|.--.++.-+..|++. ++-| .=||.
T Consensus 13 ~~~~~~~~~~~~l~~~G~~~vev~~~~~~~~~~i~~l~~~-----~~~~~iGag~v~~~~~~~~a~~~Ga~~i-~~p~~- 85 (190)
T cd00452 13 DDAEDALALAEALIEGGIRAIEITLRTPGALEAIRALRKE-----FPEALIGAGTVLTPEQADAAIAAGAQFI-VSPGL- 85 (190)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHH-----CCCCEEEEEeCCCHHHHHHHHHcCCCEE-EcCCC-
Confidence 3578888999999999999999999999999999999985 54 66666555556666777776 6655 33332
Q ss_pred CchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEee
Q 006566 193 ADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT 238 (640)
Q Consensus 193 ~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGv 238 (640)
..++++.|++++.++=+|+
T Consensus 86 ---------------------------~~~~~~~~~~~~~~~i~gv 104 (190)
T cd00452 86 ---------------------------DPEVVKAANRAGIPLLPGV 104 (190)
T ss_pred ---------------------------CHHHHHHHHHcCCcEECCc
Confidence 1358999999999998888
No 70
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=90.34 E-value=8.6 Score=41.12 Aligned_cols=206 Identities=16% Similarity=0.180 Sum_probs=126.7
Q ss_pred eEEEce-eecCCCCceEEEeccCCC-CCC---HHHHHHHHHHHHHcCCCEEEEe----------cC---------CHHHH
Q 006566 90 TVMVGN-VAIGSEHPIRVQTMTTND-TKD---VAGTVEEVMRIADQGADLVRIT----------VQ---------GKREA 145 (640)
Q Consensus 90 ~V~VG~-v~IGG~~PI~VQSMt~t~-T~D---v~atv~Qi~rl~~aGceiVRvt----------vp---------~~~~A 145 (640)
.++||+ +.+ .|-|..-.|++.. +.| ++..++--.+.+..|+-+|=.. .| +.+..
T Consensus 4 P~~i~~~~~l--kNRi~~~p~~~~~~~~~g~~~~~~~~~y~~rA~gG~glii~~~~~v~~~~~~~~~~~~~~~~~~d~~i 81 (338)
T cd04733 4 PLTLPNGATL--PNRLAKAAMSERLADGRGLPTPELIRLYRRWAEGGIGLIITGNVMVDPRHLEEPGIIGNVVLESGEDL 81 (338)
T ss_pred CeEcCCCcEE--cccceecccccccccCCCCCCHHHHHHHHHHhCCCceEEEEeeEEECcccccCCCcCCCcccCCHHHH
Confidence 466774 766 7889999997543 344 6788888888888888887111 12 45678
Q ss_pred HHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhhcCceeeCCCCCCchh---hhc-cccccchHHHHHHHhhhHhhHH
Q 006566 146 DACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRR---AQF-EQLEYTDDEYQKELQHIEEVFS 221 (640)
Q Consensus 146 ~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~v~KVRINPGN~~d~~---k~F-~~~eYtdeeY~~Ele~I~~~f~ 221 (640)
+.++++.+..++.|.. +++=++.--+.+... ....-+-|....... ..+ ...+.| .+|+++|.+.|.
T Consensus 82 ~~~~~l~~~vh~~G~~--~~~Ql~h~G~~~~~~---~~~~~~~ps~~~~~~~~~~~~~~p~~mt----~~eI~~~i~~~~ 152 (338)
T cd04733 82 EAFREWAAAAKANGAL--IWAQLNHPGRQSPAG---LNQNPVAPSVALDPGGLGKLFGKPRAMT----EEEIEDVIDRFA 152 (338)
T ss_pred HHHHHHHHHHHhcCCE--EEEEccCCCcCCCcc---CCCCCcCCCCCcCcccccccCCCCCcCC----HHHHHHHHHHHH
Confidence 9999999999888874 455544322221110 011112222211110 000 012233 467888888899
Q ss_pred HHHHHHHHcCC-eEEEeeCCCCCcHhHHH--------HhCCChHHHHHHHHHHHHHHH-HCCCCcEEEEEEeCCh-----
Q 006566 222 PLVEKCKKYGR-AVRIGTNHGSLSDRIMS--------YYGDSPRGMVESAFEFARICR-KLDFHNFLFSMKASNP----- 286 (640)
Q Consensus 222 ~lV~~~Ke~g~-aIRIGvNhGSLs~ril~--------ryGdtp~gMVeSAle~~~i~e-~~~F~diviSmKsSn~----- 286 (640)
.-.+.||+.|- .|=|=.-||.|-..+++ +||.+.+.=..-.+|.++-.+ ..| .++.|++|-|-.
T Consensus 153 ~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG-~d~~v~vris~~~~~~~ 231 (338)
T cd04733 153 HAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVG-PGFPVGIKLNSADFQRG 231 (338)
T ss_pred HHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcC-CCCeEEEEEcHHHcCCC
Confidence 99999999987 45554456666555554 688776665666666666444 344 678999998721
Q ss_pred hhHHHHHHHHHHHHHHcCCCc
Q 006566 287 VVMVQAYRLLVAEMYVHGWDY 307 (640)
Q Consensus 287 ~~mV~AyRlL~~~m~~~g~dy 307 (640)
-...+....+++.|++.|++|
T Consensus 232 g~~~eea~~ia~~Le~~Gvd~ 252 (338)
T cd04733 232 GFTEEDALEVVEALEEAGVDL 252 (338)
T ss_pred CCCHHHHHHHHHHHHHcCCCE
Confidence 123455567777888888875
No 71
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=90.29 E-value=2.1 Score=45.37 Aligned_cols=110 Identities=11% Similarity=0.120 Sum_probs=81.1
Q ss_pred cCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCCCcceeeccCC-CHHHHH
Q 006566 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHF-APSVAL 176 (640)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~iPLVADIHF-~~~~Al 176 (640)
+|.+.+|+|=- | ..-+.+.+++-+++|.+.|.+++==-+|. .+.+.++.++++ +++|+++|=++ ++.-+.
T Consensus 186 ~g~~~~l~vDa--N-~~~~~~~a~~~~~~l~~~~i~~iEqP~~~-~~~~~~~~l~~~-----~~ipi~~dE~~~~~~~~~ 256 (357)
T cd03316 186 VGPDVDLMVDA--N-GRWDLAEAIRLARALEEYDLFWFEEPVPP-DDLEGLARLRQA-----TSVPIAAGENLYTRWEFR 256 (357)
T ss_pred hCCCCEEEEEC--C-CCCCHHHHHHHHHHhCccCCCeEcCCCCc-cCHHHHHHHHHh-----CCCCEEeccccccHHHHH
Confidence 56677787721 1 23467888888888888887775432332 245667777774 88999999764 688888
Q ss_pred HHhh--hcCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEee
Q 006566 177 RVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT 238 (640)
Q Consensus 177 ~Aa~--~v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGv 238 (640)
.+++ .+|-|.|-|...|.-.+ ...+.+.|+++|+++=+|.
T Consensus 257 ~~i~~~~~d~v~~k~~~~GGi~~----------------------~~~i~~~a~~~g~~~~~~~ 298 (357)
T cd03316 257 DLLEAGAVDIIQPDVTKVGGITE----------------------AKKIAALAEAHGVRVAPHG 298 (357)
T ss_pred HHHHhCCCCEEecCccccCCHHH----------------------HHHHHHHHHHcCCeEeccC
Confidence 8887 49999999999997443 6789999999999986664
No 72
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=90.10 E-value=2.8 Score=42.81 Aligned_cols=110 Identities=15% Similarity=0.284 Sum_probs=80.4
Q ss_pred cCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCCCcceeeccCC-CHHHHH
Q 006566 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHF-APSVAL 176 (640)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~iPLVADIHF-~~~~Al 176 (640)
+|.+-+++|=- | ..-+.+.+++-+++|.+.|-+.+=--++. .+.+.++++++. +++|+.+|=++ ++.-+.
T Consensus 126 ~g~~~~l~vDa--n-~~~~~~~a~~~~~~l~~~~i~~iEeP~~~-~d~~~~~~l~~~-----~~ipia~dE~~~~~~~~~ 196 (265)
T cd03315 126 VGDDAELRVDA--N-RGWTPKQAIRALRALEDLGLDYVEQPLPA-DDLEGRAALARA-----TDTPIMADESAFTPHDAF 196 (265)
T ss_pred cCCCCEEEEeC--C-CCcCHHHHHHHHHHHHhcCCCEEECCCCc-ccHHHHHHHHhh-----CCCCEEECCCCCCHHHHH
Confidence 45555665532 1 22457888888889999888877543432 346777788774 88999999775 566666
Q ss_pred HHhh--hcCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEee
Q 006566 177 RVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT 238 (640)
Q Consensus 177 ~Aa~--~v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGv 238 (640)
.+++ .++-|.+-|...|.-.+ +..+++.|+++|+++=+|.
T Consensus 197 ~~i~~~~~d~v~~k~~~~GGi~~----------------------~~~~~~~A~~~gi~~~~~~ 238 (265)
T cd03315 197 RELALGAADAVNIKTAKTGGLTK----------------------AQRVLAVAEALGLPVMVGS 238 (265)
T ss_pred HHHHhCCCCEEEEecccccCHHH----------------------HHHHHHHHHHcCCcEEecC
Confidence 6655 49999999999998442 7889999999999997773
No 73
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=90.04 E-value=22 Score=35.49 Aligned_cols=177 Identities=15% Similarity=0.173 Sum_probs=105.0
Q ss_pred CCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCCCcceee--ccCCC-------
Q 006566 101 EHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVA--DIHFA------- 171 (640)
Q Consensus 101 ~~PI~VQSMt~t~T~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~iPLVA--DIHF~------- 171 (640)
+--|+-|.-...+..|..-..+-.+++.++|...+.+ .+. +.++.|++. .++|+++ =-||+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~i~~~a~~~~~~G~~~~~~--~~~---~~~~~i~~~-----~~iPil~~~~~~~~~~~~~ig 79 (219)
T cd04729 10 GLIVSCQALPGEPLHSPEIMAAMALAAVQGGAVGIRA--NGV---EDIRAIRAR-----VDLPIIGLIKRDYPDSEVYIT 79 (219)
T ss_pred CeEEEccCCCCCCcCcHHHHHHHHHHHHHCCCeEEEc--CCH---HHHHHHHHh-----CCCCEEEEEecCCCCCCceeC
Confidence 3446778888888899999999999999999998775 333 667777763 6799985 12342
Q ss_pred H--HHHHHHhhh-cCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcC-CeEEEeeCCCCCcHhH
Q 006566 172 P--SVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYG-RAVRIGTNHGSLSDRI 247 (640)
Q Consensus 172 ~--~~Al~Aa~~-v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g-~aIRIGvNhGSLs~ri 247 (640)
+ .-+..|++. ++-|=++-.....+.. +...++++.+++++ +++-.++
T Consensus 80 ~~~~~~~~a~~aGad~I~~~~~~~~~p~~--------------------~~~~~~i~~~~~~g~~~iiv~v--------- 130 (219)
T cd04729 80 PTIEEVDALAAAGADIIALDATDRPRPDG--------------------ETLAELIKRIHEEYNCLLMADI--------- 130 (219)
T ss_pred CCHHHHHHHHHcCCCEEEEeCCCCCCCCC--------------------cCHHHHHHHHHHHhCCeEEEEC---------
Confidence 2 244566666 7766665333221110 13677899999988 6554443
Q ss_pred HHHhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEEe------CChhhHHHHHHHHHHHHHHcCCCcceEEEeecCCCCCc
Q 006566 248 MSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKA------SNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGED 321 (640)
Q Consensus 248 l~ryGdtp~gMVeSAle~~~i~e~~~F~diviSmKs------Sn~~~mV~AyRlL~~~m~~~g~dyPLHLGVTEAG~ged 321 (640)
.|++ .++.+.+.|++=++++.-. .......+..+.+.+. .+-|+-. .
T Consensus 131 -----~t~~--------ea~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~-----~~ipvia---------~ 183 (219)
T cd04729 131 -----STLE--------EALNAAKLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKA-----LGIPVIA---------E 183 (219)
T ss_pred -----CCHH--------HHHHHHHcCCCEEEccCccccccccCCCCCCHHHHHHHHHh-----cCCCEEE---------e
Confidence 1332 2355667787765443110 0111224444555444 3556542 2
Q ss_pred ceeehHHHHHHHhhhcCCcEEEe
Q 006566 322 GRMKSAIGIGTLLQDGLGDTIRV 344 (640)
Q Consensus 322 GrIKSAiGIG~LL~DGIGDTIRV 344 (640)
|-|++.-.+-.++..| -|.+-|
T Consensus 184 GGI~~~~~~~~~l~~G-adgV~v 205 (219)
T cd04729 184 GRINSPEQAAKALELG-ADAVVV 205 (219)
T ss_pred CCCCCHHHHHHHHHCC-CCEEEE
Confidence 5566666666666666 466555
No 74
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=90.01 E-value=1.5 Score=45.21 Aligned_cols=55 Identities=20% Similarity=0.347 Sum_probs=41.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEecC--CHHHHHHHHHHHHHhhcCCCCcceee
Q 006566 112 NDTKDVAGTVEEVMRIADQGADLVRITVQ--GKREADACFEIKNSLVQKNYNIPLVA 166 (640)
Q Consensus 112 t~T~Dv~atv~Qi~rl~~aGceiVRvtvp--~~~~A~~l~~I~~~L~~~g~~iPLVA 166 (640)
..|-+.+...+.+.++.+.|||||++++. +.+|+..|-+...++++.+.+.|+||
T Consensus 146 ~~tP~~~~l~~~~~~~~~~gaDivKia~~a~~~~D~~~ll~~~~~~~~~~~~~P~i~ 202 (253)
T PRK02412 146 EKTPPKEEIVERLRKMESLGADIVKIAVMPQSEQDVLTLLNATREMKELYADQPLIT 202 (253)
T ss_pred CCCcCHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCCEEE
Confidence 44555566778899999999999999975 66777666666666655566788864
No 75
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=89.76 E-value=8.4 Score=42.32 Aligned_cols=146 Identities=16% Similarity=0.288 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHHcCCCEEEEe----cCCHHHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhhcCceeeCCCCC
Q 006566 117 VAGTVEEVMRIADQGADLVRIT----VQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNF 192 (640)
Q Consensus 117 v~atv~Qi~rl~~aGceiVRvt----vp~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~v~KVRINPGN~ 192 (640)
+++-+++|......+-.+=.|- +|+.=..+.|.+|-+.|++. .|+.-|. ++ .+-.||+++
T Consensus 50 ~~~L~~Ei~~~~~~~~~i~~iy~GGGTps~l~~~~l~~ll~~i~~~---~~~~~~~-----------ei--t~E~~P~~l 113 (400)
T PRK07379 50 VEVLCQEIAITPSFGQPLQTVFFGGGTPSLLSVEQLERILTTLDQR---FGIAPDA-----------EI--SLEIDPGTF 113 (400)
T ss_pred HHHHHHHHHHhhccCCceeEEEECCCccccCCHHHHHHHHHHHHHh---CCCCCCC-----------EE--EEEeCCCcC
Confidence 4556666665433343343343 68876777777777766532 2332221 22 134799998
Q ss_pred CchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCC--ChHHHHHHHHHHHHHHH
Q 006566 193 ADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGD--SPRGMVESAFEFARICR 270 (640)
Q Consensus 193 ~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGd--tp~gMVeSAle~~~i~e 270 (640)
.. + .++..|+.|+- ||=+.-=|.+++++...|- ++ +.+.+.++.++
T Consensus 114 t~-e--------------------------~l~~l~~~Gvn-rislGvQS~~d~~L~~l~R~~~~----~~~~~ai~~l~ 161 (400)
T PRK07379 114 DL-E--------------------------QLQGYRSLGVN-RVSLGVQAFQDELLALCGRSHRV----KDIFAAVDLIH 161 (400)
T ss_pred CH-H--------------------------HHHHHHHCCCC-EEEEEcccCCHHHHHHhCCCCCH----HHHHHHHHHHH
Confidence 43 2 35677788864 6555557788999999983 54 45566677889
Q ss_pred HCCCCcEEEEEEeCChhhHHHHHHHHHHHHHHcCCCcceEEEe
Q 006566 271 KLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGV 313 (640)
Q Consensus 271 ~~~F~diviSmKsSn~~~mV~AyRlL~~~m~~~g~dyPLHLGV 313 (640)
+.||.++.+.+=--=|-.+.+..+.-.+.+.+.+ |-|+.+
T Consensus 162 ~~G~~~v~~dlI~GlPgqt~e~~~~tl~~~~~l~---p~~is~ 201 (400)
T PRK07379 162 QAGIENFSLDLISGLPHQTLEDWQASLEAAIALN---PTHLSC 201 (400)
T ss_pred HcCCCeEEEEeecCCCCCCHHHHHHHHHHHHcCC---CCEEEE
Confidence 9999987666544334455666666555554444 556665
No 76
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=89.75 E-value=18 Score=39.13 Aligned_cols=202 Identities=17% Similarity=0.187 Sum_probs=123.4
Q ss_pred eeEEEceeecCCCCceEEEeccCCC--CCC---HHHHHHHHHHHHHcCCCEEEEe-----------------cCCHHHHH
Q 006566 89 RTVMVGNVAIGSEHPIRVQTMTTND--TKD---VAGTVEEVMRIADQGADLVRIT-----------------VQGKREAD 146 (640)
Q Consensus 89 r~V~VG~v~IGG~~PI~VQSMt~t~--T~D---v~atv~Qi~rl~~aGceiVRvt-----------------vp~~~~A~ 146 (640)
.+++||++.+ -|-|..-.|++.. +.| ++..++--.+.++-|+-+| ++ .-+.+...
T Consensus 5 ~P~~ig~~~l--kNRiv~apm~~~~~~~~~G~~t~~~~~~y~~rA~gG~GlI-i~~~~~v~~~~~~~~~~~~~~~d~~i~ 81 (337)
T PRK13523 5 SPYTIKDVTL--KNRIVMSPMCMYSSENKDGKVTNFHLIHYGTRAAGQVGLV-IVEATAVLPEGRISDKDLGIWDDEHIE 81 (337)
T ss_pred CCeeECCEee--ecccEecccccccccCCCCCCCHHHHHHHHHHHcCCCeEE-EECCeEECccccCCCCceecCCHHHHH
Confidence 3577888777 7889999997533 223 6778888888898888887 22 23556789
Q ss_pred HHHHHHHHhhcCCCCcceeecc-CCCHHHHHHHhhhcCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHH
Q 006566 147 ACFEIKNSLVQKNYNIPLVADI-HFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVE 225 (640)
Q Consensus 147 ~l~~I~~~L~~~g~~iPLVADI-HF~~~~Al~Aa~~v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~ 225 (640)
.++++.+..++.|.. +++=+ |.-.. +. .+..-+-|-.+..........+.| .+|++.|.+.|..-.+
T Consensus 82 ~~r~l~d~vh~~G~~--i~~QL~H~G~~-~~-----~~~~~~~ps~~~~~~~~~~p~~mt----~eeI~~ii~~f~~aA~ 149 (337)
T PRK13523 82 GLHKLVTFIHDHGAK--AAIQLAHAGRK-AE-----LEGDIVAPSAIPFDEKSKTPVEMT----KEQIKETVLAFKQAAV 149 (337)
T ss_pred HHHHHHHHHHhcCCE--EEEEccCCCCC-CC-----CCCCccCCCCCCCCCCCCCCCcCC----HHHHHHHHHHHHHHHH
Confidence 999999999988754 45554 43322 10 011112333332211111112334 4678888899999999
Q ss_pred HHHHcCCeE-EEeeCCCCCcHhHH--------HHhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEEeCChh-----hHHH
Q 006566 226 KCKKYGRAV-RIGTNHGSLSDRIM--------SYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPV-----VMVQ 291 (640)
Q Consensus 226 ~~Ke~g~aI-RIGvNhGSLs~ril--------~ryGdtp~gMVeSAle~~~i~e~~~F~diviSmKsSn~~-----~mV~ 291 (640)
.|++.|--. =|=.-||-|=..++ .+||.+.+.=..=++|-++-.++.= ++.|++|-|-.. ...+
T Consensus 150 ~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~--~~~v~vRis~~d~~~~G~~~~ 227 (337)
T PRK13523 150 RAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVW--DGPLFVRISASDYHPGGLTVQ 227 (337)
T ss_pred HHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhc--CCCeEEEecccccCCCCCCHH
Confidence 999988754 33444554444444 4588666554555555555444431 335666666311 2467
Q ss_pred HHHHHHHHHHHcCCCc
Q 006566 292 AYRLLVAEMYVHGWDY 307 (640)
Q Consensus 292 AyRlL~~~m~~~g~dy 307 (640)
.+..+++.+++.|+||
T Consensus 228 e~~~i~~~l~~~gvD~ 243 (337)
T PRK13523 228 DYVQYAKWMKEQGVDL 243 (337)
T ss_pred HHHHHHHHHHHcCCCE
Confidence 7777888888888885
No 77
>PRK09989 hypothetical protein; Provisional
Probab=89.64 E-value=6.7 Score=39.73 Aligned_cols=137 Identities=15% Similarity=0.219 Sum_probs=86.5
Q ss_pred HHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCCCcceee----ccC-------CC----------HHHHH-HHh
Q 006566 122 EEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVA----DIH-------FA----------PSVAL-RVA 179 (640)
Q Consensus 122 ~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~iPLVA----DIH-------F~----------~~~Al-~Aa 179 (640)
+.+.+++++|-+-|=+..+..-+ .+++++.|.+.|..++.+. |+- .+ .+-++ .|.
T Consensus 19 ~~l~~~~~~Gfd~VEl~~~~~~~---~~~~~~~l~~~Gl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~A~ 95 (258)
T PRK09989 19 ERFAAARKAGFDAVEFLFPYDYS---TLQIQKQLEQNHLTLALFNTAPGDINAGEWGLSALPGREHEARADIDLALEYAL 95 (258)
T ss_pred HHHHHHHHcCCCEEEECCcccCC---HHHHHHHHHHcCCcEEEeccCCCccCCCCCcccCCCccHHHHHHHHHHHHHHHH
Confidence 56777888898888876654333 4577888888888877653 221 11 12222 233
Q ss_pred hh-cCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEee-CCCCCcHhHHHHhCCChHH
Q 006566 180 EC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT-NHGSLSDRIMSYYGDSPRG 257 (640)
Q Consensus 180 ~~-v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGv-NhGSLs~ril~ryGdtp~g 257 (640)
+. +..|++.||.+-+.. + .++..+.+.+.++++.+.|+++|+.+.+=. |.+- . +--
T Consensus 96 ~lg~~~v~v~~g~~~~~~--------~---~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~l~~~~---------~--~~~ 153 (258)
T PRK09989 96 ALNCEQVHVMAGVVPAGE--------D---AERYRAVFIDNLRYAADRFAPHGKRILVEALSPGV---------K--PHY 153 (258)
T ss_pred HhCcCEEEECccCCCCCC--------C---HHHHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCC---------C--CCC
Confidence 44 788999999764211 1 133457778889999999999998876522 2210 0 011
Q ss_pred HHHHHHHHHHHHHHCCCCcEEEEEEe
Q 006566 258 MVESAFEFARICRKLDFHNFLFSMKA 283 (640)
Q Consensus 258 MVeSAle~~~i~e~~~F~diviSmKs 283 (640)
++.+.-+..+++++.+=.++.+-+=.
T Consensus 154 ~~~~~~~~~~ll~~v~~~~v~l~lD~ 179 (258)
T PRK09989 154 LFSSQYQALAIVEEVARDNVFIQLDT 179 (258)
T ss_pred ccCCHHHHHHHHHHcCCCCeEEEeeh
Confidence 34455667788888887777777654
No 78
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=89.44 E-value=1.9 Score=43.66 Aligned_cols=54 Identities=28% Similarity=0.439 Sum_probs=41.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEecC--CHHHHHHHHHHHHHhhcCCCCcceee
Q 006566 112 NDTKDVAGTVEEVMRIADQGADLVRITVQ--GKREADACFEIKNSLVQKNYNIPLVA 166 (640)
Q Consensus 112 t~T~Dv~atv~Qi~rl~~aGceiVRvtvp--~~~~A~~l~~I~~~L~~~g~~iPLVA 166 (640)
..|-+.+...+.+.++.+.|||+|++++. +.+|...|-....++.+. .++|+||
T Consensus 129 ~~tp~~~~l~~~~~~~~~~gaDivKia~~a~~~~D~~~ll~~~~~~~~~-~~~p~i~ 184 (228)
T TIGR01093 129 QKTPSWEEIVERLEKALSYGADIVKIAVMANSKEDVLTLLEITNKVDEH-ADVPLIT 184 (228)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCEEEEEeccCCHHHHHHHHHHHHHHHhc-CCCCEEE
Confidence 55666677889999999999999999984 667777777766665443 5688875
No 79
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=89.28 E-value=26 Score=37.14 Aligned_cols=145 Identities=10% Similarity=0.050 Sum_probs=89.8
Q ss_pred CHHHHHHHHHHHHHcC-----CCEEEEecCCHHHHHHHHHHHHHhhcCCCCcc-eeeccCCCHHHHHHHhhh-cCceee-
Q 006566 116 DVAGTVEEVMRIADQG-----ADLVRITVQGKREADACFEIKNSLVQKNYNIP-LVADIHFAPSVALRVAEC-FDKIRV- 187 (640)
Q Consensus 116 Dv~atv~Qi~rl~~aG-----ceiVRvtvp~~~~A~~l~~I~~~L~~~g~~iP-LVADIHF~~~~Al~Aa~~-v~KVRI- 187 (640)
.++.-++=++.|.++| .+-+=++.-+.+|++.+..|.+. +...| +++=.==+.+=...|+++ ++.|-|
T Consensus 19 ~~~~Kv~i~~~L~~~G~~~~~v~~IE~~s~~~~d~~~v~~~~~~----~~~~~~v~~~~r~~~~die~A~~~g~~~v~i~ 94 (279)
T cd07947 19 TVEQIVKIYDYLHELGGGSGVIRQTEFFLYTEKDREAVEACLDR----GYKFPEVTGWIRANKEDLKLVKEMGLKETGIL 94 (279)
T ss_pred CHHHHHHHHHHHHHcCCCCCccceEEecCcChHHHHHHHHHHHc----CCCCCEEEEEecCCHHHHHHHHHcCcCEEEEE
Confidence 7888899999999999 77777777777888888877753 33212 333111133444566666 776664
Q ss_pred CCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCCCh-HHHHHHHHHHH
Q 006566 188 NPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSP-RGMVESAFEFA 266 (640)
Q Consensus 188 NPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGdtp-~gMVeSAle~~ 266 (640)
.|-+=...++ -+..-.+.+-+++.++|+.||++|..+|++.-..|=+ .+ .-.++=+.+++
T Consensus 95 ~s~S~~~~~~----------~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~ed~~r~---------d~~~~v~~~~~~~~ 155 (279)
T cd07947 95 MSVSDYHIFK----------KLKMTREEAMEKYLEIVEEALDHGIKPRCHLEDITRA---------DIYGFVLPFVNKLM 155 (279)
T ss_pred EcCCHHHHHH----------HhCcCHHHHHHHHHHHHHHHHHCCCeEEEEEEcccCC---------CcccchHHHHHHHH
Confidence 1211111111 1333456677788999999999999999998111111 11 23445566777
Q ss_pred HHHHHCCCCcEEEEEEeC
Q 006566 267 RICRKLDFHNFLFSMKAS 284 (640)
Q Consensus 267 ~i~e~~~F~diviSmKsS 284 (640)
+.+.+.|=+ +.|+++-+
T Consensus 156 ~~~~~~G~~-~~i~l~DT 172 (279)
T cd07947 156 KLSKESGIP-VKIRLCDT 172 (279)
T ss_pred HHHHHCCCC-EEEEeccC
Confidence 778888844 45777754
No 80
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=88.71 E-value=13 Score=40.00 Aligned_cols=156 Identities=19% Similarity=0.223 Sum_probs=88.0
Q ss_pred HHHHHHHHHcCCCEEEEe-cCCHHHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhh-cCceeeC----CCCCCc
Q 006566 121 VEEVMRIADQGADLVRIT-VQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVN----PGNFAD 194 (640)
Q Consensus 121 v~Qi~rl~~aGceiVRvt-vp~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~-v~KVRIN----PGN~~d 194 (640)
..++..|+++|||+|==| ++.+ ..+-+..||+ .|++|+|||+- |..=|+.+++. ++=||-- -||+..
T Consensus 79 ~~Ea~~L~~~GvDiIDeTe~lrP-ade~~~~~K~-----~f~vpfmad~~-~l~EAlrai~~GadmI~Tt~e~gTg~v~~ 151 (287)
T TIGR00343 79 FVEAQILEALGVDYIDESEVLTP-ADWTFHIDKK-----KFKVPFVCGAR-DLGEALRRINEGAAMIRTKGEAGTGNIVE 151 (287)
T ss_pred HHHHHHHHHcCCCEEEccCCCCc-HHHHHHHHHH-----HcCCCEEccCC-CHHHHHHHHHCCCCEEeccccCCCccHHH
Confidence 889999999999999432 1222 3455555665 48999999996 45556677777 8888854 234222
Q ss_pred hhhhccccccc-----------hHHHHHHHhhhHhhHHHHHHHHHHcCCeEE-EeeCCCCCcHhHHHHhCCChHHHHHHH
Q 006566 195 RRAQFEQLEYT-----------DDEYQKELQHIEEVFSPLVEKCKKYGRAVR-IGTNHGSLSDRIMSYYGDSPRGMVESA 262 (640)
Q Consensus 195 ~~k~F~~~eYt-----------deeY~~Ele~I~~~f~~lV~~~Ke~g~aIR-IGvNhGSLs~ril~ryGdtp~gMVeSA 262 (640)
--+. ..-|| |+|...--+.+.--+.-|-+.++..++|+= |.. |-+ .||
T Consensus 152 av~h--lr~~~~~~~~~~~~~~~~~~~~~a~~~~~~~elLkei~~~~~iPVV~fAi--GGI---------~TP------- 211 (287)
T TIGR00343 152 AVRH--MRKINEEIRQIQNMLEEEDLAAVAKELRVPVELLLEVLKLGKLPVVNFAA--GGV---------ATP------- 211 (287)
T ss_pred HHHH--HHHHHHHHHHHhcccchhHHhhhhcccCCCHHHHHHHHHhCCCCEEEecc--CCC---------CCH-------
Confidence 1110 01122 222111111112223323333333456651 111 111 366
Q ss_pred HHHHHHHHHCCCCcEEEE---EEeCChhhHHHHHHHHHHHHHHcCCCcce
Q 006566 263 FEFARICRKLDFHNFLFS---MKASNPVVMVQAYRLLVAEMYVHGWDYPL 309 (640)
Q Consensus 263 le~~~i~e~~~F~diviS---mKsSn~~~mV~AyRlL~~~m~~~g~dyPL 309 (640)
+.+..|-++|-+-+++. +||.||..+.++++..... ++-|-
T Consensus 212 -edAa~~melGAdGVaVGSaI~ks~dP~~~akafv~ai~~-----~~~~~ 255 (287)
T TIGR00343 212 -ADAALMMQLGADGVFVGSGIFKSSNPEKLAKAIVEATTH-----YDNPE 255 (287)
T ss_pred -HHHHHHHHcCCCEEEEhHHhhcCCCHHHHHHHHHHHHHH-----cCCHH
Confidence 34555567888888775 7889999888887776666 55553
No 81
>COG1410 MetH Methionine synthase I, cobalamin-binding domain [Amino acid transport and metabolism]
Probab=88.71 E-value=6.2 Score=47.14 Aligned_cols=180 Identities=22% Similarity=0.307 Sum_probs=127.5
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecC--CHHHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhh-cCceeeCCCC
Q 006566 115 KDVAGTVEEVMRIADQGADLVRITVQ--GKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGN 191 (640)
Q Consensus 115 ~Dv~atv~Qi~rl~~aGceiVRvtvp--~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~-v~KVRINPGN 191 (640)
.|-+.+++-.+.=.+.|++|+=|-+- +.+.-+...++-. |..-..++||+=|.-- ..+-..+.++ =-|.=+|-=|
T Consensus 51 ~~y~~~l~iAr~Qv~~GA~ilDvn~d~~~~D~~~~m~~~l~-~~a~~~~vPlMIDSs~-~eviEagLk~~qGk~ivNSis 128 (842)
T COG1410 51 EDYDEALDVARQQVENGAQILDVNVDYVGRDGVADMVELLN-LLANEPTVPLMIDSSE-WEVIEAGLKCAQGKCIVNSIN 128 (842)
T ss_pred ccHHHHHHHHHHHHhcCCEEEEeeccccccccHHHHHHHHH-HhccCCCCceEEehhH-HHHHHHHHhhccCceeeeeee
Confidence 68899999999999999999988753 3344445555554 3344677999999753 3444455566 4566688888
Q ss_pred CCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCCChHHHHHHHHHHHHHHHH
Q 006566 192 FADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRK 271 (640)
Q Consensus 192 ~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGdtp~gMVeSAle~~~i~e~ 271 (640)
+.+++ ++|...++.||+||.++.++++ ++. .-++|++-=+|=|-+-..++++
T Consensus 129 ~eege---------------------~~f~~~~~LvkkYGaaVVvma~----DE~---GqA~t~eRK~eIakR~y~l~~~ 180 (842)
T COG1410 129 YEEGE---------------------ERFEKVAELVKKYGAAVVVMTI----DEE---GQARTAERKFEIAKRAYILTEE 180 (842)
T ss_pred ecccH---------------------HHHHHHHHHHHHhCCcEEEEee----ccc---cccccHHHHHHHHHHHHHHHHh
Confidence 87753 4699999999999999999983 332 1126777767777776789999
Q ss_pred CCC--CcEEEEEE-----e------CChhhHHHHHHHHHHHHHHcCCC-cceEEEeecCCCCCcceeehHHH
Q 006566 272 LDF--HNFLFSMK-----A------SNPVVMVQAYRLLVAEMYVHGWD-YPLHLGVTEAGEGEDGRMKSAIG 329 (640)
Q Consensus 272 ~~F--~diviSmK-----s------Sn~~~mV~AyRlL~~~m~~~g~d-yPLHLGVTEAG~gedGrIKSAiG 329 (640)
.|| +||+|-.- + .+....++|-|.+-++ .. .=.-+||..--.+..|.++.++.
T Consensus 181 ~gfpp~dIIfDPnvf~iaTgiEEh~~~gvd~Ieair~Ik~~-----LP~~~tt~GvSNvSFslrg~~Re~ln 247 (842)
T COG1410 181 VGFPPEDIIFDPNVFPIATGIEEHRNYGVDTIEAIRRIKKE-----LPHVLTTLGLSNVSFGLRGAVREVLN 247 (842)
T ss_pred cCCCchheeeccceeeeccchhhhhhhHHHHHHHHHHHHHh-----CccceeccccccccCCCChHHHHhhh
Confidence 999 56766421 1 2345668888888877 32 33467999988888886666654
No 82
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=88.23 E-value=7.4 Score=40.75 Aligned_cols=58 Identities=24% Similarity=0.462 Sum_probs=42.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCC---------HHHHH--H---------HHHHHHHhhcCCCCcceeeccCCCH
Q 006566 115 KDVAGTVEEVMRIADQGADLVRITVQG---------KREAD--A---------CFEIKNSLVQKNYNIPLVADIHFAP 172 (640)
Q Consensus 115 ~Dv~atv~Qi~rl~~aGceiVRvtvp~---------~~~A~--~---------l~~I~~~L~~~g~~iPLVADIHF~~ 172 (640)
-|.+.|.+-++.|.+.|+|++=+-+|- +++|. + +-++-+++|++..++|+|.-.-|||
T Consensus 23 P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~vlm~Y~N~ 100 (258)
T PRK13111 23 PDLETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIVLMTYYNP 100 (258)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecccH
Confidence 377999999999999999999999997 44431 1 1223334665677788887777775
No 83
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=88.22 E-value=24 Score=38.80 Aligned_cols=178 Identities=16% Similarity=0.257 Sum_probs=113.5
Q ss_pred cCCCceeEEEceeecCCCCceEEEeccCCCCCCHHHHHHHHHHH-HHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCCCc
Q 006566 84 VRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRI-ADQGADLVRITVQGKREADACFEIKNSLVQKNYNI 162 (640)
Q Consensus 84 ~Rr~Tr~V~VG~v~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~rl-~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~i 162 (640)
.|-..+.+.|+|+++|+. ..+.+..++-+.|| .++||+-|.|-=-..+-++.++.+.+ ..|
T Consensus 91 ~Rga~~a~vVaDmPfgSY------------~~s~e~av~nA~rl~~eaGa~aVKlEGg~~~~~~~I~~l~~------~GI 152 (332)
T PLN02424 91 ARGANRPLLVGDLPFGSY------------ESSTDQAVESAVRMLKEGGMDAVKLEGGSPSRVTAAKAIVE------AGI 152 (332)
T ss_pred hccCCCCEEEeCCCCCCC------------CCCHHHHHHHHHHHHHHhCCcEEEECCCcHHHHHHHHHHHH------cCC
Confidence 455667888889998843 24668999999999 56999999998543445566666654 668
Q ss_pred ceeeccCCCHHHHHHHhhhcCceeeCCCCCCchhhhccccccchHHHHHH----------------HhhhHhhHHHHHHH
Q 006566 163 PLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKE----------------LQHIEEVFSPLVEK 226 (640)
Q Consensus 163 PLVADIHF~~~~Al~Aa~~v~KVRINPGN~~d~~k~F~~~eYtdeeY~~E----------------le~I~~~f~~lV~~ 226 (640)
|+++-|=++|+-.-. . |-|.-..| |+++..+= ||-|-+.+ .-++
T Consensus 153 PV~gHiGLtPQs~~~----l-------GGykvqGr-------~~~~a~~li~dA~ale~AGAf~ivLE~Vp~~l--a~~I 212 (332)
T PLN02424 153 AVMGHVGLTPQAISV----L-------GGFRPQGR-------TAESAVKVVETALALQEAGCFAVVLECVPAPV--AAAI 212 (332)
T ss_pred CEEEeecccceeehh----h-------cCccccCC-------CHHHHHHHHHHHHHHHHcCCcEEEEcCCcHHH--HHHH
Confidence 999998888864321 1 22211111 11211111 11111111 1245
Q ss_pred HHHcCCeEEEeeCCCC-----------------------CcHhHHHHhCCChHHHHHHHHHHHHHHHHCCCCcEE---EE
Q 006566 227 CKKYGRAVRIGTNHGS-----------------------LSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFL---FS 280 (640)
Q Consensus 227 ~Ke~g~aIRIGvNhGS-----------------------Ls~ril~ryGdtp~gMVeSAle~~~i~e~~~F~div---iS 280 (640)
+++..+|. ||+-.|. ...++..+|.+--..|.++.-+|++=.++--|..-- +.
T Consensus 213 t~~l~IPt-IGIGAG~~cDGQVLV~~D~LG~~~~p~h~~~~PkFvk~y~~~~~~~~~A~~~y~~eVk~g~FP~~eh~~~~ 291 (332)
T PLN02424 213 TSALQIPT-IGIGAGPFCSGQVLVYHDLLGMMQHPHHAKVTPKFCKQYAKVGEVINKALAEYKEEVENGAFPGPAHSPYK 291 (332)
T ss_pred HHhCCCCE-EeecCCCCCCceeEeHHhhcCCCCCccccCCCCchHHHHHhHHHHHHHHHHHHHHHHhCCCCCCccccCCC
Confidence 67777776 6665553 234678888876678999999999999998885432 33
Q ss_pred EEeCChhhHHHHHHHHHHHHHHcCCCc
Q 006566 281 MKASNPVVMVQAYRLLVAEMYVHGWDY 307 (640)
Q Consensus 281 mKsSn~~~mV~AyRlL~~~m~~~g~dy 307 (640)
|| -+.+..|.+.++++|+|-
T Consensus 292 ~~-------~~~~~~~~~~l~~~~~~~ 311 (332)
T PLN02424 292 IS-------SAEVDGFAEALQKRGLDK 311 (332)
T ss_pred CC-------HHHHHHHHHHHHHcCchH
Confidence 43 234777888888888763
No 84
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=88.06 E-value=13 Score=41.56 Aligned_cols=151 Identities=12% Similarity=0.176 Sum_probs=97.2
Q ss_pred CCHHHHHHHHHHHHHc---C--CCEEEEe--cCCHHHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhhcCceee
Q 006566 115 KDVAGTVEEVMRIADQ---G--ADLVRIT--VQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRV 187 (640)
Q Consensus 115 ~Dv~atv~Qi~rl~~a---G--ceiVRvt--vp~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~v~KVRI 187 (640)
..+++-+++|+.+.+. + .+-|-+. +|+.-..+.|.+|.+.+++. .|+..|++| .+..
T Consensus 81 ~y~~~L~~Ei~~~~~~~~~~~~v~~i~~gGGtPs~l~~~~l~~ll~~l~~~---~~~~~~~e~-------------tie~ 144 (453)
T PRK09249 81 PYLDALEKEIALVAALLGPGRPVSQLHWGGGTPTFLSPEQLRRLMALLREH---FNFAPDAEI-------------SIEI 144 (453)
T ss_pred HHHHHHHHHHHHHHHHhCCCCceEEEEECCcccccCCHHHHHHHHHHHHHh---CCCCCCCEE-------------EEEe
Confidence 4678888898877653 3 3333342 56665566677777665542 233222221 2568
Q ss_pred CCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCCChHHHHHHHHHHHH
Q 006566 188 NPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFAR 267 (640)
Q Consensus 188 NPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGdtp~gMVeSAle~~~ 267 (640)
||.++.+ +.++..|+.|+. ||-+.-=|.+++++...|-. .=.+.+++-++
T Consensus 145 np~~lt~---------------------------e~l~~l~~aG~~-risiGvqS~~~~~L~~l~r~--~~~~~~~~ai~ 194 (453)
T PRK09249 145 DPRELDL---------------------------EMLDALRELGFN-RLSLGVQDFDPEVQKAVNRI--QPFEFTFALVE 194 (453)
T ss_pred cCCcCCH---------------------------HHHHHHHHcCCC-EEEECCCCCCHHHHHHhCCC--CCHHHHHHHHH
Confidence 9998843 246777777853 55555567789999998731 12356677788
Q ss_pred HHHHCCCCcEEEEEEeCChhhHHHHHHHHHHHHHHcCCCcceEEEee
Q 006566 268 ICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVT 314 (640)
Q Consensus 268 i~e~~~F~diviSmKsSn~~~mV~AyRlL~~~m~~~g~dyPLHLGVT 314 (640)
.+++.||.++.+.+=---|..+.+..+...+.+.+.+ |=|+.+.
T Consensus 195 ~l~~~G~~~v~~dli~GlPgqt~e~~~~~l~~~~~l~---~~~i~~y 238 (453)
T PRK09249 195 AARELGFTSINIDLIYGLPKQTPESFARTLEKVLELR---PDRLAVF 238 (453)
T ss_pred HHHHcCCCcEEEEEEccCCCCCHHHHHHHHHHHHhcC---CCEEEEc
Confidence 8999999988888776666667777777666665555 3466554
No 85
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=87.90 E-value=14 Score=39.74 Aligned_cols=143 Identities=17% Similarity=0.248 Sum_probs=88.5
Q ss_pred CHHHHHHHHHHHHH-cCCCEEEEe--cCCHHHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhhcCceeeCCCCC
Q 006566 116 DVAGTVEEVMRIAD-QGADLVRIT--VQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNF 192 (640)
Q Consensus 116 Dv~atv~Qi~rl~~-aGceiVRvt--vp~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~v~KVRINPGN~ 192 (640)
.+++.+++|+.+.. .+.+.|-+. +|+.-..+.++.|.+.+++ +.++ -++ ++ -+-.||+++
T Consensus 35 y~~~l~~Ei~~~~~~~~~~~i~~gGGtps~l~~~~l~~L~~~i~~--~~~~--~~~-----------ei--tie~~p~~~ 97 (374)
T PRK05799 35 YIKALSKEIRNSTKNKKIKSIFIGGGTPTYLSLEALEILKETIKK--LNKK--EDL-----------EF--TVEGNPGTF 97 (374)
T ss_pred HHHHHHHHHHhhcCCCceeEEEECCCcccCCCHHHHHHHHHHHHh--CCCC--CCC-----------EE--EEEeCCCcC
Confidence 47888888876532 234556665 6765445556666655432 2211 111 11 234689888
Q ss_pred CchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCCChHHHHHHHHHHHHHHHHC
Q 006566 193 ADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKL 272 (640)
Q Consensus 193 ~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGdtp~gMVeSAle~~~i~e~~ 272 (640)
-+ +.++..|+.|+. ||-+.-=|++++++...|-.. =++.+++.++.+++.
T Consensus 98 t~---------------------------e~l~~l~~~G~~-rvsiGvqS~~d~~L~~l~R~~--~~~~~~~ai~~l~~~ 147 (374)
T PRK05799 98 TE---------------------------EKLKILKSMGVN-RLSIGLQAWQNSLLKYLGRIH--TFEEFLENYKLARKL 147 (374)
T ss_pred CH---------------------------HHHHHHHHcCCC-EEEEECccCCHHHHHHcCCCC--CHHHHHHHHHHHHHc
Confidence 43 256778888864 665555889999999998311 156677788899999
Q ss_pred CCCcEEEEEEeCChhhHHHHHHHHHHHHHHcCC
Q 006566 273 DFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGW 305 (640)
Q Consensus 273 ~F~diviSmKsSn~~~mV~AyRlL~~~m~~~g~ 305 (640)
||.++.+.+=--=|..+.+.++...+.+.+.+.
T Consensus 148 g~~~v~~dli~GlPgqt~e~~~~~l~~~~~l~~ 180 (374)
T PRK05799 148 GFNNINVDLMFGLPNQTLEDWKETLEKVVELNP 180 (374)
T ss_pred CCCcEEEEeecCCCCCCHHHHHHHHHHHHhcCC
Confidence 998776665443344556666666666655553
No 86
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=87.84 E-value=0.79 Score=46.37 Aligned_cols=66 Identities=27% Similarity=0.376 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhh-cCcee
Q 006566 118 AGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIR 186 (640)
Q Consensus 118 ~atv~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~-v~KVR 186 (640)
--|++.+..|.++|||||=+-+-+..--+.|.++.++.++++ .+++||| =+..=|+.|.+. +|-|=
T Consensus 51 TPT~~ev~~l~~aGadIIAlDaT~R~Rp~~l~~li~~i~~~~--~l~MADi-st~ee~~~A~~~G~D~I~ 117 (192)
T PF04131_consen 51 TPTLKEVDALAEAGADIIALDATDRPRPETLEELIREIKEKY--QLVMADI-STLEEAINAAELGFDIIG 117 (192)
T ss_dssp S-SHHHHHHHHHCT-SEEEEE-SSSS-SS-HHHHHHHHHHCT--SEEEEE--SSHHHHHHHHHTT-SEEE
T ss_pred CCCHHHHHHHHHcCCCEEEEecCCCCCCcCHHHHHHHHHHhC--cEEeeec-CCHHHHHHHHHcCCCEEE
Confidence 357899999999999999987544432244555555444445 9999999 578888888888 88764
No 87
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=87.64 E-value=21 Score=39.13 Aligned_cols=209 Identities=17% Similarity=0.142 Sum_probs=120.2
Q ss_pred eEEEceeecCCCCceEEEeccCC--CCCC---HHHHHHHHHHHHHcCCCEEEEe------------cC--------CHHH
Q 006566 90 TVMVGNVAIGSEHPIRVQTMTTN--DTKD---VAGTVEEVMRIADQGADLVRIT------------VQ--------GKRE 144 (640)
Q Consensus 90 ~V~VG~v~IGG~~PI~VQSMt~t--~T~D---v~atv~Qi~rl~~aGceiVRvt------------vp--------~~~~ 144 (640)
.++||++.+ .|-|..-.|++. .|.| ++..++--.+.++.|+-+|=.- .+ +.+.
T Consensus 4 P~~ig~~~l--kNRiv~apm~~~~~~~~dg~~t~~~~~yy~~rA~gG~GlIi~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 81 (382)
T cd02931 4 PIKIGKVEI--KNRFAMAPMGPLGLADNDGAFNQRGIDYYVERAKGGTGLIITGVTMVDNEIEQFPMPSLPCPTYNPTAF 81 (382)
T ss_pred CeeECCEEE--eCCcEeCCcCcccccCCCCCCCHHHHHHHHHHhcCCCCEEEEEEEEeCCcccccCCCCccccccCCHHH
Confidence 567777777 788999999752 3455 7888888888898787776211 01 1123
Q ss_pred HHHHHHHHHHhhcCCCCcceeeccCCC-HHHHHHHhhhcCceeeCCCCCCchhhh-ccccccchHHHHHHHhhhHhhHHH
Q 006566 145 ADACFEIKNSLVQKNYNIPLVADIHFA-PSVALRVAECFDKIRVNPGNFADRRAQ-FEQLEYTDDEYQKELQHIEEVFSP 222 (640)
Q Consensus 145 A~~l~~I~~~L~~~g~~iPLVADIHF~-~~~Al~Aa~~v~KVRINPGN~~d~~k~-F~~~eYtdeeY~~Ele~I~~~f~~ 222 (640)
.+.++++.+..++.|. ++++=++.. -+.+......-.+ =+-|..+..+... -...+.| .+|++.|.+.|..
T Consensus 82 i~~~k~l~davh~~G~--~i~~QL~H~~Gr~~~~~~~~~~~-~~~ps~~~~~~~~~~~p~~mt----~~eI~~ii~~f~~ 154 (382)
T cd02931 82 IRTAKEMTERVHAYGT--KIFLQLTAGFGRVCIPGFLGEDK-PVAPSPIPNRWLPEITCRELT----TEEVETFVGKFGE 154 (382)
T ss_pred hHHHHHHHHHHHHcCC--EEEEEccCcCCCccCccccCCCC-ccCCCCCCCCcCCCCCCCcCC----HHHHHHHHHHHHH
Confidence 6789999998888886 456665321 2322111000001 1334433221100 0112333 3567778888999
Q ss_pred HHHHHHHcCCeE-EE-eeCCCCCcHh--------HHHHhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEEeCCh------
Q 006566 223 LVEKCKKYGRAV-RI-GTNHGSLSDR--------IMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNP------ 286 (640)
Q Consensus 223 lV~~~Ke~g~aI-RI-GvNhGSLs~r--------il~ryGdtp~gMVeSAle~~~i~e~~~F~diviSmKsSn~------ 286 (640)
-.+.|++.|--. =| |.|||-|=.. --.+||.+.+.=..=.+|-++-.++.==.++.|++|-|-.
T Consensus 155 AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~~~~~~~ 234 (382)
T cd02931 155 SAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIKDL 234 (382)
T ss_pred HHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEechhhcccc
Confidence 999999987653 34 3455876333 3345887765544444555554444311567899987621
Q ss_pred -------------hhHHHHHHHHHHHHHHcCCCc
Q 006566 287 -------------VVMVQAYRLLVAEMYVHGWDY 307 (640)
Q Consensus 287 -------------~~mV~AyRlL~~~m~~~g~dy 307 (640)
-.+.+....+++.+++.|+||
T Consensus 235 ~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~ 268 (382)
T cd02931 235 RQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDA 268 (382)
T ss_pred ccccccccccccCCCCHHHHHHHHHHHHHhCCCE
Confidence 113445556677777777664
No 88
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=87.61 E-value=35 Score=34.77 Aligned_cols=141 Identities=13% Similarity=0.138 Sum_probs=89.6
Q ss_pred HHHHHHHHHcCCCEEEEecCCHH--------HHHHHHHHHHHhhcCCCCcceee-ccC-------CCHHH----------
Q 006566 121 VEEVMRIADQGADLVRITVQGKR--------EADACFEIKNSLVQKNYNIPLVA-DIH-------FAPSV---------- 174 (640)
Q Consensus 121 v~Qi~rl~~aGceiVRvtvp~~~--------~A~~l~~I~~~L~~~g~~iPLVA-DIH-------F~~~~---------- 174 (640)
.+++..++++|-+-|=+.+++.. ..+.+..|++.|.+.|..++-++ ..| .++..
T Consensus 24 ~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~i~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 103 (283)
T PRK13209 24 LEKLAIAKTAGFDFVEMSVDESDERLARLDWSREQRLALVNALVETGFRVNSMCLSAHRRFPLGSEDDAVRAQALEIMRK 103 (283)
T ss_pred HHHHHHHHHcCCCeEEEecCccccchhccCCCHHHHHHHHHHHHHcCCceeEEecccccccCCCCCCHHHHHHHHHHHHH
Confidence 35566678899999888766532 35678889999999999987654 344 23321
Q ss_pred H-HHHhhh-cCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhC
Q 006566 175 A-LRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYG 252 (640)
Q Consensus 175 A-l~Aa~~-v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryG 252 (640)
+ ..|.+. +..|++.++.... +.+..+..++..+.+.++++.|+++|+.|-|= ||++
T Consensus 104 ~i~~a~~lG~~~i~~~~~~~~~-----------~~~~~~~~~~~~~~l~~l~~~A~~~GV~i~iE-~~~~---------- 161 (283)
T PRK13209 104 AIQLAQDLGIRVIQLAGYDVYY-----------EQANNETRRRFIDGLKESVELASRASVTLAFE-IMDT---------- 161 (283)
T ss_pred HHHHHHHcCCCEEEECCccccc-----------cccHHHHHHHHHHHHHHHHHHHHHhCCEEEEe-ecCC----------
Confidence 2 234444 8888886543221 11123445677788999999999999766443 2321
Q ss_pred CChHHHHHHHHHHHHHHHHCCCCcEEEEEEeCChh
Q 006566 253 DSPRGMVESAFEFARICRKLDFHNFLFSMKASNPV 287 (640)
Q Consensus 253 dtp~gMVeSAle~~~i~e~~~F~diviSmKsSn~~ 287 (640)
.++.+.-+.++++++.+-.++-+.+=..|..
T Consensus 162 ----~~~~~~~~~~~ll~~v~~~~lgl~~D~~h~~ 192 (283)
T PRK13209 162 ----PFMNSISKALGYAHYLNSPWFQLYPDIGNLS 192 (283)
T ss_pred ----cccCCHHHHHHHHHHhCCCccceEeccchHH
Confidence 1223344677778887777777777666644
No 89
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=87.48 E-value=3.3 Score=47.25 Aligned_cols=71 Identities=17% Similarity=0.318 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCHHHH---HHHHHHHHHhhcCCCC-cceee-ccCCCHHHHHHHhhh-cCceeeC--CC
Q 006566 119 GTVEEVMRIADQGADLVRITVQGKREA---DACFEIKNSLVQKNYN-IPLVA-DIHFAPSVALRVAEC-FDKIRVN--PG 190 (640)
Q Consensus 119 atv~Qi~rl~~aGceiVRvtvp~~~~A---~~l~~I~~~L~~~g~~-iPLVA-DIHF~~~~Al~Aa~~-v~KVRIN--PG 190 (640)
.+.+.+..|.+||||+|=+-+++-... +.++.||+. ++ +|||+ || -++.-|..|+++ +|-|++- ||
T Consensus 248 ~~~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~~-----~p~~~vi~g~v-~t~e~a~~a~~aGaD~i~vg~g~G 321 (505)
T PLN02274 248 SDKERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKKT-----YPELDVIGGNV-VTMYQAQNLIQAGVDGLRVGMGSG 321 (505)
T ss_pred cHHHHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHHh-----CCCCcEEEecC-CCHHHHHHHHHcCcCEEEECCCCC
Confidence 456899999999999999987654433 467777764 64 99975 88 679999999999 9999874 77
Q ss_pred CCCch
Q 006566 191 NFADR 195 (640)
Q Consensus 191 N~~d~ 195 (640)
-+...
T Consensus 322 ~~~~t 326 (505)
T PLN02274 322 SICTT 326 (505)
T ss_pred ccccC
Confidence 55543
No 90
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=87.42 E-value=47 Score=35.97 Aligned_cols=209 Identities=16% Similarity=0.220 Sum_probs=127.7
Q ss_pred eEEEceeecCCCCceEEEeccCCCCCC---HHHHHHHHHHHHHcCCCEEEEe----c-------------CCHHHHHHHH
Q 006566 90 TVMVGNVAIGSEHPIRVQTMTTNDTKD---VAGTVEEVMRIADQGADLVRIT----V-------------QGKREADACF 149 (640)
Q Consensus 90 ~V~VG~v~IGG~~PI~VQSMt~t~T~D---v~atv~Qi~rl~~aGceiVRvt----v-------------p~~~~A~~l~ 149 (640)
+++||++.| .|-|..-.|++....| ++..++--.+.++.|+-+| || | -+.+..++++
T Consensus 4 P~~i~~~~l--kNRiv~apm~~~~~~~G~~t~~~~~~y~~~A~gG~GlI-i~e~~~v~~~~~~~~~~~~l~~d~~i~~~~ 80 (343)
T cd04734 4 PLQLGHLTL--RNRIVSTAHATNYAEDGLPSERYIAYHEERARGGAGLI-ITEGSSVHPSDSPAFGNLNASDDEIIPGFR 80 (343)
T ss_pred CeeeCCEEe--cCCeEECCcccccccCCCCCHHHHHHHHHHHhCCCCEE-EEeeeeeCCcccCCCCccccCCHHHHHHHH
Confidence 467787777 7888888887655544 7888888999999888776 32 1 1446678999
Q ss_pred HHHHHhhcCCCCcceeeccCCCHHHHHHHhhhcCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHH
Q 006566 150 EIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKK 229 (640)
Q Consensus 150 ~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke 229 (640)
++.+..++.|. ++++=++..-+.+.... ....-+-|..+..........+.| .+|++.|.+.|..-.+.|++
T Consensus 81 ~l~~~vh~~g~--~~~~Ql~H~G~~~~~~~--~~~~~~~ps~~~~~~~~~~~~~mt----~~eI~~ii~~f~~AA~ra~~ 152 (343)
T cd04734 81 RLAEAVHAHGA--VIMIQLTHLGRRGDGDG--SWLPPLAPSAVPEPRHRAVPKAME----EEDIEEIIAAFADAARRCQA 152 (343)
T ss_pred HHHHHHHhcCC--eEEEeccCCCcCcCccc--CCCcccCCCCCCCCCCCCCCCcCC----HHHHHHHHHHHHHHHHHHHH
Confidence 99999988775 56766554322221100 011123333332211001112233 45677888888888888888
Q ss_pred cCC-eEEEeeCCCCC-----cHhHHH---HhCCChHHHHHHHHHHHHHHHHC-CCCcEEEEEEeCChh-----hHHHHHH
Q 006566 230 YGR-AVRIGTNHGSL-----SDRIMS---YYGDSPRGMVESAFEFARICRKL-DFHNFLFSMKASNPV-----VMVQAYR 294 (640)
Q Consensus 230 ~g~-aIRIGvNhGSL-----s~ril~---ryGdtp~gMVeSAle~~~i~e~~-~F~diviSmKsSn~~-----~mV~AyR 294 (640)
.|- .|=|=.-||-| |+..-. .||.+.+.=..-++|.++-.++. | .++.+.+|-|-.. ...+...
T Consensus 153 aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg-~~~~v~iRl~~~~~~~~G~~~~e~~ 231 (343)
T cd04734 153 GGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVG-PDFIVGIRISGDEDTEGGLSPDEAL 231 (343)
T ss_pred cCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcC-CCCeEEEEeehhhccCCCCCHHHHH
Confidence 887 56566667876 443222 28877665555566666655543 4 5667777766422 1244556
Q ss_pred HHHHHHHHcC-CCcceEE
Q 006566 295 LLVAEMYVHG-WDYPLHL 311 (640)
Q Consensus 295 lL~~~m~~~g-~dyPLHL 311 (640)
.|++.|++.| .|| +|+
T Consensus 232 ~~~~~l~~~G~vd~-i~v 248 (343)
T cd04734 232 EIAARLAAEGLIDY-VNV 248 (343)
T ss_pred HHHHHHHhcCCCCE-EEe
Confidence 7788888887 676 443
No 91
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=87.35 E-value=1.1 Score=48.82 Aligned_cols=90 Identities=20% Similarity=0.227 Sum_probs=61.2
Q ss_pred CceEEEeecCCCCCCCchhHHHHHHHHHHHHCCCCCCEEEEeccCCCCCccchHHHHHHhhhhhhhccccceeeecCCCC
Q 006566 538 DATMILHDLPFNEDKIGRVQAARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGALLVDGLGDGLLLEAPGQ 617 (640)
Q Consensus 538 ~~~v~il~~~~~~~~~~~v~~~R~l~~~L~~~g~~~PVi~~~~y~~~~~~~~~~l~aa~d~GaLL~DGlGDGi~l~~~~~ 617 (640)
+.+++.++ .|+-.--+.+||.|..+ +++|+=+-. ++.-....=.+++|+-+|.||.+|+||=|=+.-...
T Consensus 168 ~~i~iS~K---~Sdv~~~v~aYr~lA~~-----~dyPLHLGv--TEAG~~~~G~VkSa~alg~LL~eGIGDTIRVSLt~~ 237 (361)
T COG0821 168 DDIKVSVK---ASDVQLMVAAYRLLAKR-----CDYPLHLGV--TEAGMGFKGIVKSAAALGALLSEGIGDTIRVSLTAD 237 (361)
T ss_pred CcEEEEEE---cCCHHHHHHHHHHHHHh-----cCCCcccce--ecccCcccceehHHHHHHHHHHhcCCceEEEecCCC
Confidence 46777777 55555666666665543 567754432 221112335689999999999999999998876544
Q ss_pred Chhhhhhhhhhhhhhcccccc
Q 006566 618 DFDFLRDTSFNLLQGVCLMSI 638 (640)
Q Consensus 618 ~~~~~~~~aF~ILQaaR~r~~ 638 (640)
+... -..+|.|||..++|..
T Consensus 238 P~~E-V~V~~eILqslglR~~ 257 (361)
T COG0821 238 PVEE-VKVAQEILQSLGLRSR 257 (361)
T ss_pred chhh-hHHHHHHHHHhCcccc
Confidence 3333 3579999999999964
No 92
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=87.32 E-value=15 Score=39.56 Aligned_cols=143 Identities=13% Similarity=0.119 Sum_probs=90.9
Q ss_pred CCHHHHHHHHHHHHHc----CCCEEEEe--cCCHHHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhhcCceeeC
Q 006566 115 KDVAGTVEEVMRIADQ----GADLVRIT--VQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVN 188 (640)
Q Consensus 115 ~Dv~atv~Qi~rl~~a----GceiVRvt--vp~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~v~KVRIN 188 (640)
..+++-++||+...+. +.+-|=+. +|+.-..+.+.+|-+.+++. ++ -| +++ .+-.|
T Consensus 31 ~y~~~L~~Ei~~~~~~~~~~~v~~iyfGGGTPs~l~~~~l~~ll~~i~~~---~~--~~-----------~ei--tiE~n 92 (350)
T PRK08446 31 EYMQALCLDLKFELEQFTDEKIESVFIGGGTPSTVSAKFYEPIFEIISPY---LS--KD-----------CEI--TTEAN 92 (350)
T ss_pred HHHHHHHHHHHHHHhhccCCceeEEEECCCccccCCHHHHHHHHHHHHHh---cC--CC-----------ceE--EEEeC
Confidence 4678888998865432 45556665 88887777788877766543 11 01 122 25679
Q ss_pred CCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCC-ChHHHHHHHHHHHH
Q 006566 189 PGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFAR 267 (640)
Q Consensus 189 PGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGd-tp~gMVeSAle~~~ 267 (640)
|..+-. + .++..|+.|+- ||-+.-=|++++++...|- .. .+.+++-++
T Consensus 93 P~~~~~-e--------------------------~l~~l~~~Gvn-RiSiGvQS~~~~~L~~lgR~~~---~~~~~~ai~ 141 (350)
T PRK08446 93 PNSATK-A--------------------------WLKGMKNLGVN-RISFGVQSFNEDKLKFLGRIHS---QKQIIKAIE 141 (350)
T ss_pred CCCCCH-H--------------------------HHHHHHHcCCC-EEEEecccCCHHHHHHcCCCCC---HHHHHHHHH
Confidence 988843 2 36777788865 5544446788899998883 22 466777788
Q ss_pred HHHHCCCCcEEEEEEeCChhhHHHHHHHHHHHHHHcCCC
Q 006566 268 ICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWD 306 (640)
Q Consensus 268 i~e~~~F~diviSmKsSn~~~mV~AyRlL~~~m~~~g~d 306 (640)
.+++.||.+|.+.+=--=|..+.+..+.-.+...+.+.+
T Consensus 142 ~lr~~g~~~v~iDli~GlPgqt~~~~~~~l~~~~~l~~~ 180 (350)
T PRK08446 142 NAKKAGFENISIDLIYDTPLDNKKLLKEELKLAKELPIN 180 (350)
T ss_pred HHHHcCCCEEEEEeecCCCCCCHHHHHHHHHHHHhcCCC
Confidence 999999986655443322334556666655555555544
No 93
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=87.22 E-value=35 Score=36.07 Aligned_cols=146 Identities=13% Similarity=0.122 Sum_probs=88.3
Q ss_pred CCHHHHHHHHHHH-HHcCCCEEEEecC--CHHHHHHHHHHHHHhhcCCC--Cccee--eccCCCHHHHHHHhhh-cCcee
Q 006566 115 KDVAGTVEEVMRI-ADQGADLVRITVQ--GKREADACFEIKNSLVQKNY--NIPLV--ADIHFAPSVALRVAEC-FDKIR 186 (640)
Q Consensus 115 ~Dv~atv~Qi~rl-~~aGceiVRvtvp--~~~~A~~l~~I~~~L~~~g~--~iPLV--ADIHF~~~~Al~Aa~~-v~KVR 186 (640)
..++.-++=++.| .++|.+.+=++.| +.+|.+++++|.+.-...+. ++-++ +|+ .+-+..|.++ ++.|+
T Consensus 16 ~s~e~K~~i~~~L~~~~Gv~~IEvg~~~~s~~e~~av~~~~~~~~~~~~~~~~~~~a~~~~---~~~~~~A~~~g~~~i~ 92 (280)
T cd07945 16 FSPSEKLNIAKILLQELKVDRIEVASARVSEGEFEAVQKIIDWAAEEGLLDRIEVLGFVDG---DKSVDWIKSAGAKVLN 92 (280)
T ss_pred cCHHHHHHHHHHHHHHhCCCEEEecCCCCCHHHHHHHHHHHHHhhhhccccCcEEEEecCc---HHHHHHHHHCCCCEEE
Confidence 5567778888887 5669999999988 88899999999863211111 12222 232 3445566666 88888
Q ss_pred eCC-CCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCCChHHHHHHHHHH
Q 006566 187 VNP-GNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEF 265 (640)
Q Consensus 187 INP-GN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGdtp~gMVeSAle~ 265 (640)
|-- ..-..-+++ +..-.+..-+++.++|+.||++|..++++.-. +-.-|-.+|+ -..+.
T Consensus 93 i~~~~S~~h~~~~----------~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d------~~~~~r~~~~----~~~~~ 152 (280)
T cd07945 93 LLTKGSLKHCTEQ----------LRKTPEEHFADIREVIEYAIKNGIEVNIYLED------WSNGMRDSPD----YVFQL 152 (280)
T ss_pred EEEeCCHHHHHHH----------HCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEe------CCCCCcCCHH----HHHHH
Confidence 642 111111110 11223455566888999999999999988732 1111212443 34455
Q ss_pred HHHHHHCCCCcEEEEEEeCC
Q 006566 266 ARICRKLDFHNFLFSMKASN 285 (640)
Q Consensus 266 ~~i~e~~~F~diviSmKsSn 285 (640)
++-+.+.|-+ .|+++-+.
T Consensus 153 ~~~~~~~G~~--~i~l~DT~ 170 (280)
T cd07945 153 VDFLSDLPIK--RIMLPDTL 170 (280)
T ss_pred HHHHHHcCCC--EEEecCCC
Confidence 6666777876 46777654
No 94
>TIGR00492 alr alanine racemase. This enzyme interconverts L-alanine and D-alanine. Its primary function is to generate D-alanine for cell wall formation. With D-alanine-D-alanine ligase, it makes up the D-alanine branch of the peptidoglycan biosynthetic route. It is a monomer with one pyridoxal phosphate per subunit. In E. coli, the ortholog is duplicated so that a second isozyme, DadX, is present. DadX, a paralog of the biosynthetic Alr, is induced by D- or L-alanine and is involved in catabolism.
Probab=87.09 E-value=8.8 Score=41.21 Aligned_cols=148 Identities=20% Similarity=0.244 Sum_probs=75.7
Q ss_pred HHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhhcCceeeCCCCCCchhhhccc
Q 006566 122 EEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQ 201 (640)
Q Consensus 122 ~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~v~KVRINPGN~~d~~k~F~~ 201 (640)
+=++.|.++||+ .++|-+.+||..+. +.|++.|++-=-...+.-...++++ .+.++=.++.
T Consensus 44 ~i~~~l~~~G~~--~~~vas~~Ea~~lr-------~~G~~~~ilvl~~~~~~~~~~~~~~--~l~~~v~s~~-------- 104 (367)
T TIGR00492 44 EVAKTLLQAGAD--YFGVANLEEAITLR-------KAGITAPILLLGGFFAEDLKILAAW--DLTTTVHSVE-------- 104 (367)
T ss_pred HHHHHHHHCCCC--EEEECcHHHHHHHH-------hcCCCCCEEEEeCCCHHHHHHHHHc--CCEEEECCHH--------
Confidence 334567889987 68899999988754 3477766543233334443344332 1222211111
Q ss_pred cccchHHHHHHHhhhHhhHHHHHHHHHHcCC--eEEEeeCCCCCcHhHHHHhCCChHHHHHHHHHHHHHHHHC-CCC---
Q 006566 202 LEYTDDEYQKELQHIEEVFSPLVEKCKKYGR--AVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKL-DFH--- 275 (640)
Q Consensus 202 ~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~--aIRIGvNhGSLs~ril~ryGdtp~gMVeSAle~~~i~e~~-~F~--- 275 (640)
.+..+-+.|+++|. .+=|=+|.| |+|+|-+|+. +.+.++.+.++ +..
T Consensus 105 -----------------~l~~l~~~a~~~~~~~~V~l~VdtG------m~R~Gi~~~e----~~~~~~~i~~~~~l~~l~ 157 (367)
T TIGR00492 105 -----------------QLQALEEALLKEPKRLKVHLKIDTG------MNRLGVKPDE----AALFVQKLRQLKKFLELE 157 (367)
T ss_pred -----------------HHHHHHHHHHHcCCceEEEEEeeCC------CCCCCCChHH----HHHHHHHHHhCCCCCCce
Confidence 13444556666663 334446788 5999977753 23344444433 222
Q ss_pred cEEEEEEe-C-Chh--hH---HHHHHHHHHHHHHcCCCcc-eEEEeecC
Q 006566 276 NFLFSMKA-S-NPV--VM---VQAYRLLVAEMYVHGWDYP-LHLGVTEA 316 (640)
Q Consensus 276 diviSmKs-S-n~~--~m---V~AyRlL~~~m~~~g~dyP-LHLGVTEA 316 (640)
=+ .|-=+ + ++. .. .+.++.+++.+.+.|.+.| +|+|-|-+
T Consensus 158 Gi-~tH~~~~~~~~~~~~~~q~~~f~~~~~~l~~~g~~~~~~~~~nS~~ 205 (367)
T TIGR00492 158 GI-FSHFATADEPKTGTTQKQIERFNSFLEGLKQQNIEPPFRHIANSAA 205 (367)
T ss_pred EE-EcCCCCCCCCCChHHHHHHHHHHHHHHHHhhcCCCCCcEEccCCHH
Confidence 11 12211 1 111 22 3344455666666676655 47765544
No 95
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=86.46 E-value=37 Score=33.86 Aligned_cols=177 Identities=15% Similarity=0.160 Sum_probs=107.2
Q ss_pred CCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCCCccee---e-c-----cCCC
Q 006566 101 EHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLV---A-D-----IHFA 171 (640)
Q Consensus 101 ~~PI~VQSMt~t~T~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~iPLV---A-D-----IHF~ 171 (640)
+-=|+-|.--.++-++.+..++-+..+.++|+--+++.. -+.++.|++. .++|++ . | +...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~G~~~~~~~~-----~~~i~~i~~~-----~~~Pil~~~~~d~~~~~~~~~ 75 (221)
T PRK01130 6 GLIVSCQALPGEPLHSPEIMAAMALAAVQGGAVGIRANG-----VEDIKAIRAV-----VDVPIIGIIKRDYPDSEVYIT 75 (221)
T ss_pred CEEEEecCCCCCCCCCHHHHHHHHHHHHHCCCeEEEcCC-----HHHHHHHHHh-----CCCCEEEEEecCCCCCCceEC
Confidence 344677888778888888889999999999999999853 5677777774 678886 2 2 3222
Q ss_pred --HHHHHHHhhh-cCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHH-cCCeEEEeeCCCCCcHhH
Q 006566 172 --PSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKK-YGRAVRIGTNHGSLSDRI 247 (640)
Q Consensus 172 --~~~Al~Aa~~-v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke-~g~aIRIGvNhGSLs~ri 247 (640)
.+-+.+|.+. ++-|=+.-.+.-... .+...++++.||+ .++++ .+...
T Consensus 76 ~~~~~v~~a~~aGad~I~~d~~~~~~p~--------------------~~~~~~~i~~~~~~~~i~v--i~~v~------ 127 (221)
T PRK01130 76 PTLKEVDALAAAGADIIALDATLRPRPD--------------------GETLAELVKRIKEYPGQLL--MADCS------ 127 (221)
T ss_pred CCHHHHHHHHHcCCCEEEEeCCCCCCCC--------------------CCCHHHHHHHHHhCCCCeE--EEeCC------
Confidence 2346677777 775543211110000 0126778999999 67665 43221
Q ss_pred HHHhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEEe------CChhhHHHHHHHHHHHHHHcCCCcceEEEeecCCCCCc
Q 006566 248 MSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKA------SNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGED 321 (640)
Q Consensus 248 l~ryGdtp~gMVeSAle~~~i~e~~~F~diviSmKs------Sn~~~mV~AyRlL~~~m~~~g~dyPLHLGVTEAG~ged 321 (640)
|+ +.++.+++.|++=++++.-. ..........+.+.+. .+-|+-. .
T Consensus 128 ------t~--------ee~~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~-----~~iPvia---------~ 179 (221)
T PRK01130 128 ------TL--------EEGLAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKA-----VGCPVIA---------E 179 (221)
T ss_pred ------CH--------HHHHHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHh-----CCCCEEE---------E
Confidence 22 22345778898765553210 0111224444555554 4567543 3
Q ss_pred ceeehHHHHHHHhhhcCCcEEEe
Q 006566 322 GRMKSAIGIGTLLQDGLGDTIRV 344 (640)
Q Consensus 322 GrIKSAiGIG~LL~DGIGDTIRV 344 (640)
|-|++.-.+-.++..| -|.+-|
T Consensus 180 GGI~t~~~~~~~l~~G-adgV~i 201 (221)
T PRK01130 180 GRINTPEQAKKALELG-AHAVVV 201 (221)
T ss_pred CCCCCHHHHHHHHHCC-CCEEEE
Confidence 6677777777888777 577766
No 96
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=86.43 E-value=35 Score=37.46 Aligned_cols=212 Identities=15% Similarity=0.192 Sum_probs=127.8
Q ss_pred eEEEceeecCCCCceEEEeccCCCCCC---HHHHHHHHHHHHHcCCCEEEEe---c--------C------CHHHHHHHH
Q 006566 90 TVMVGNVAIGSEHPIRVQTMTTNDTKD---VAGTVEEVMRIADQGADLVRIT---V--------Q------GKREADACF 149 (640)
Q Consensus 90 ~V~VG~v~IGG~~PI~VQSMt~t~T~D---v~atv~Qi~rl~~aGceiVRvt---v--------p------~~~~A~~l~ 149 (640)
+++||++.+ -|-|..-.|++....| ++..++--.+.++-|+-+|=+- | | +.+..+.++
T Consensus 4 Pl~ig~~~l--kNRiv~spm~~~~~~~G~~t~~~~~yy~~rA~GG~GlIite~~~V~~~~~~~~~~~~~~~~d~~i~~~~ 81 (361)
T cd04747 4 PFTLKGLTL--PNRIVMAPMTRSFSPGGVPGQDVAAYYRRRAAGGVGLIITEGTAVDHPAASGDPNVPRFHGEDALAGWK 81 (361)
T ss_pred CeeECCEEe--eCCeEEcCcccCcCCCCCCCHHHHHHHHHHhcCCccEEEecceEeccccccCCCCCCccCCHHHHHHHH
Confidence 477787777 6788888887554444 5677777778887776665110 1 1 446788999
Q ss_pred HHHHHhhcCCCCcceeeccCCCHHHHHHHhhhcCce-eeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHH
Q 006566 150 EIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKI-RVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCK 228 (640)
Q Consensus 150 ~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~v~KV-RINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~K 228 (640)
+|.+..++.|+. +++=++..-+.+........+. -+.|..+...... ...+.| .+|++.|.+.|..-.+.|+
T Consensus 82 ~l~d~vh~~Ga~--i~~QL~H~Gr~~~~~~~~~~~~~~~~ps~~~~~~~~-~p~~mt----~~eI~~ii~~f~~AA~~a~ 154 (361)
T cd04747 82 KVVDEVHAAGGK--IAPQLWHVGAMRKLGTPPFPDVPPLSPSGLVGPGKP-VGREMT----EADIDDVIAAFARAAADAR 154 (361)
T ss_pred HHHHHHHhcCCE--EEEeccCCCCCcCcccCccCCCceeCCCCCCcCCCC-CCccCC----HHHHHHHHHHHHHHHHHHH
Confidence 999998888864 5555433222221100000111 1455554332110 012333 4567888888888888999
Q ss_pred HcCCe-EEEeeCCCCCcHhHH--------HHhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEEeCC----hh-----hHH
Q 006566 229 KYGRA-VRIGTNHGSLSDRIM--------SYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASN----PV-----VMV 290 (640)
Q Consensus 229 e~g~a-IRIGvNhGSLs~ril--------~ryGdtp~gMVeSAle~~~i~e~~~F~diviSmKsSn----~~-----~mV 290 (640)
+.|-- |=|=.-||-|=..+| .+||.+.+.=..=++|-++-.++.==.|+.|.+|-|- -. .+.
T Consensus 155 ~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis~~~~~~~~~~~g~~~ 234 (361)
T cd04747 155 RLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFSQWKQQDYTARLADTP 234 (361)
T ss_pred HcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECcccccccccCCCCCH
Confidence 88754 444556775544444 4588776665666666666666642256788888872 10 233
Q ss_pred HHHHHHHHHHHHcCCCcceEE
Q 006566 291 QAYRLLVAEMYVHGWDYPLHL 311 (640)
Q Consensus 291 ~AyRlL~~~m~~~g~dyPLHL 311 (640)
+....+++.+.+.|+|| +|+
T Consensus 235 ~e~~~~~~~l~~~gvd~-i~v 254 (361)
T cd04747 235 DELEALLAPLVDAGVDI-FHC 254 (361)
T ss_pred HHHHHHHHHHHHcCCCE-EEe
Confidence 44556777788889999 886
No 97
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=86.29 E-value=17 Score=39.19 Aligned_cols=156 Identities=17% Similarity=0.220 Sum_probs=90.8
Q ss_pred CHHHHHHHHHHHHHcC---CCEEEEe--cCCHHHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhhcCceeeCCC
Q 006566 116 DVAGTVEEVMRIADQG---ADLVRIT--VQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPG 190 (640)
Q Consensus 116 Dv~atv~Qi~rl~~aG---ceiVRvt--vp~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~v~KVRINPG 190 (640)
-+++-++||+.+...| .+-|-+. +|+.-..+.|.+|-+.+++. + |+-.|+ ++ .+=.||+
T Consensus 33 y~~~l~~Ei~~~~~~~~~~i~~i~~gGGtpt~l~~~~l~~ll~~i~~~-~--~~~~~~-----------ei--t~e~~p~ 96 (377)
T PRK08599 33 YLDALIKEMNTYAIRPFDKLKTIYIGGGTPTALSAEQLERLLTAIHRN-L--PLSGLE-----------EF--TFEANPG 96 (377)
T ss_pred HHHHHHHHHHHhhhcCCCceeEEEeCCCCcccCCHHHHHHHHHHHHHh-C--CCCCCC-----------EE--EEEeCCC
Confidence 3678888886665553 3334443 45543455566666554431 1 221111 22 1236999
Q ss_pred CCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCCChHHHHHHHHHHHHHHH
Q 006566 191 NFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICR 270 (640)
Q Consensus 191 N~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGdtp~gMVeSAle~~~i~e 270 (640)
++.+ +.++..|+.|+. ||-+.-=|.++++++..|-.. =.+.+.+.++.++
T Consensus 97 ~l~~---------------------------e~l~~l~~~G~~-rvsiGvqS~~~~~l~~l~r~~--~~~~~~~~i~~l~ 146 (377)
T PRK08599 97 DLTK---------------------------EKLQVLKDSGVN-RISLGVQTFNDELLKKIGRTH--NEEDVYEAIANAK 146 (377)
T ss_pred CCCH---------------------------HHHHHHHHcCCC-EEEEecccCCHHHHHHcCCCC--CHHHHHHHHHHHH
Confidence 8843 246777777753 777777888999999998321 1478888999999
Q ss_pred HCCCCcEEEEEEeCChhhHHHHHHHHHHHHHHcCCC----cceEEEeecCCCCC
Q 006566 271 KLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWD----YPLHLGVTEAGEGE 320 (640)
Q Consensus 271 ~~~F~diviSmKsSn~~~mV~AyRlL~~~m~~~g~d----yPLHLGVTEAG~ge 320 (640)
+.||.++.+.+=--=|-.+.+.++...+.+.+.+.+ |||.+ +.|+..
T Consensus 147 ~~g~~~v~~dli~GlPgqt~~~~~~~l~~~~~l~~~~i~~y~l~~---~pgT~~ 197 (377)
T PRK08599 147 KAGFDNISIDLIYALPGQTIEDFKESLAKALALDIPHYSAYSLIL---EPKTVF 197 (377)
T ss_pred HcCCCcEEEeeecCCCCCCHHHHHHHHHHHHccCCCEEeeeceee---cCCChh
Confidence 999987665543222334455555555554444543 55543 555443
No 98
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=86.15 E-value=2.9 Score=41.80 Aligned_cols=65 Identities=18% Similarity=0.284 Sum_probs=46.3
Q ss_pred CCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecC--CHHHHHHHHHHHHHhhcCCCCcceee
Q 006566 101 EHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQ--GKREADACFEIKNSLVQKNYNIPLVA 166 (640)
Q Consensus 101 ~~PI~VQSMt~t~T~Dv~atv~Qi~rl~~aGceiVRvtvp--~~~~A~~l~~I~~~L~~~g~~iPLVA 166 (640)
+.+|.+-.=--..|-+.+...+.+.++.+.|||+|++++. +.+|..+|-++.+++++. .+.|+|+
T Consensus 113 ~~~iI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~~~~~D~~~l~~~~~~~~~~-~~~p~i~ 179 (224)
T PF01487_consen 113 GTKIILSYHDFEKTPSWEELIELLEEMQELGADIVKIAVMANSPEDVLRLLRFTKEFREE-PDIPVIA 179 (224)
T ss_dssp TSEEEEEEEESS---THHHHHHHHHHHHHTT-SEEEEEEE-SSHHHHHHHHHHHHHHHHH-TSSEEEE
T ss_pred CCeEEEEeccCCCCCCHHHHHHHHHHHHhcCCCeEEEEeccCCHHHHHHHHHHHHHHhhc-cCCcEEE
Confidence 3344443333445666666889999999999999999755 688888888888888776 7789876
No 99
>PRK14017 galactonate dehydratase; Provisional
Probab=86.01 E-value=12 Score=40.71 Aligned_cols=122 Identities=15% Similarity=0.147 Sum_probs=72.5
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCC-----------HHHHHHHHHHHHHhhcCCCCcceeeccCC--CHHHHHHHhhh
Q 006566 115 KDVAGTVEEVMRIADQGADLVRITVQG-----------KREADACFEIKNSLVQKNYNIPLVADIHF--APSVALRVAEC 181 (640)
Q Consensus 115 ~Dv~atv~Qi~rl~~aGceiVRvtvp~-----------~~~A~~l~~I~~~L~~~g~~iPLVADIHF--~~~~Al~Aa~~ 181 (640)
.+.+..++|+.++.+.|...+.+-+-. .++.+.+..+++. -|-++.|..|-+- ++.-|+..++.
T Consensus 123 ~~~~~~~~~a~~~~~~Gf~~~KiKv~~~~~~~~~~~~~~~d~~~i~avr~~---~g~~~~l~vDaN~~w~~~~A~~~~~~ 199 (382)
T PRK14017 123 DRPADVAEAARARVERGFTAVKMNGTEELQYIDSPRKVDAAVARVAAVREA---VGPEIGIGVDFHGRVHKPMAKVLAKE 199 (382)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCcCCccccccHHHHHHHHHHHHHHHHH---hCCCCeEEEECCCCCCHHHHHHHHHh
Confidence 367888899999999999999887621 3456666666663 3456788888764 44555555554
Q ss_pred cCceee-------CCCCCCc---hhhhc------cccccchHHHHHHHh------------hh--HhhHHHHHHHHHHcC
Q 006566 182 FDKIRV-------NPGNFAD---RRAQF------EQLEYTDDEYQKELQ------------HI--EEVFSPLVEKCKKYG 231 (640)
Q Consensus 182 v~KVRI-------NPGN~~d---~~k~F------~~~eYtdeeY~~Ele------------~I--~~~f~~lV~~~Ke~g 231 (640)
++...+ .|.++.. =++.- .+..+|-+++.+-++ ++ -.....+.+.|.++|
T Consensus 200 l~~~~~~~iEeP~~~~d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~a~d~v~~d~~~~GGit~~~~ia~~A~~~g 279 (382)
T PRK14017 200 LEPYRPMFIEEPVLPENAEALPEIAAQTSIPIATGERLFSRWDFKRVLEAGGVDIIQPDLSHAGGITECRKIAAMAEAYD 279 (382)
T ss_pred hcccCCCeEECCCCcCCHHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcCCCCeEecCccccCCHHHHHHHHHHHHHcC
Confidence 544432 3444311 01000 112344444443332 11 134678999999999
Q ss_pred CeEEEeeC
Q 006566 232 RAVRIGTN 239 (640)
Q Consensus 232 ~aIRIGvN 239 (640)
+++=+|..
T Consensus 280 i~~~~h~~ 287 (382)
T PRK14017 280 VALAPHCP 287 (382)
T ss_pred CeEeecCC
Confidence 99877643
No 100
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=85.74 E-value=7.1 Score=43.63 Aligned_cols=69 Identities=26% Similarity=0.392 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHcCCCEEEEec--C-CHHHHHHHHHHHHHhhcCCC-CcceeeccCCCHHHHHHHhhh-cCceee--CCC
Q 006566 118 AGTVEEVMRIADQGADLVRITV--Q-GKREADACFEIKNSLVQKNY-NIPLVADIHFAPSVALRVAEC-FDKIRV--NPG 190 (640)
Q Consensus 118 ~atv~Qi~rl~~aGceiVRvtv--p-~~~~A~~l~~I~~~L~~~g~-~iPLVADIHF~~~~Al~Aa~~-v~KVRI--NPG 190 (640)
+.+.+.+..|+++|||+|=|-+ + +..-.+.+++||++ + ++|||+=.=-++..|..++++ +|-|++ -||
T Consensus 152 ~~~~~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~~-----~p~~~vi~g~V~T~e~a~~l~~aGaD~I~vG~g~G 226 (404)
T PRK06843 152 IDTIERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKTK-----YPNLDLIAGNIVTKEAALDLISVGADCLKVGIGPG 226 (404)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHhh-----CCCCcEEEEecCCHHHHHHHHHcCCCEEEECCCCC
Confidence 4588999999999999998544 3 45566778888875 6 488877444789999999999 999885 455
Q ss_pred C
Q 006566 191 N 191 (640)
Q Consensus 191 N 191 (640)
-
T Consensus 227 s 227 (404)
T PRK06843 227 S 227 (404)
T ss_pred c
Confidence 3
No 101
>cd06815 PLPDE_III_AR_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase-like 1. This subfamily is composed of uncharacterized bacterial proteins with similarity to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.
Probab=85.60 E-value=26 Score=37.70 Aligned_cols=120 Identities=18% Similarity=0.089 Sum_probs=69.3
Q ss_pred eEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhhcC
Q 006566 104 IRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFD 183 (640)
Q Consensus 104 I~VQSMt~t~T~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~v~ 183 (640)
+++=-|.+++ -++++=++.+.++||+ .++|-+.+||..|+ +.|++.|++-=-++.++-+..++++
T Consensus 27 ~~l~~vvKa~----hg~~~va~~l~~~G~~--~f~va~i~EA~~lr-------~~G~~~~illlg~~~~~~~~~~~~~-- 91 (353)
T cd06815 27 IEVTGVTKVV----CGDPEIAEALLEGGIT--HLADSRIENLKKLK-------DLGISGPKMLLRIPMLSEVEDVVKY-- 91 (353)
T ss_pred CEEEEEEccc----CCCHHHHHHHHHcCCC--EEEeccHHHHHHHH-------hcCCCCCEEEECCCCHHHHHHHHhh--
Confidence 4444555555 3445555678889988 79999999997643 3477555433234455544444443
Q ss_pred ceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCC--eEEEeeCCCCCcHhHHHHhCCChHHHHHH
Q 006566 184 KIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGR--AVRIGTNHGSLSDRIMSYYGDSPRGMVES 261 (640)
Q Consensus 184 KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~--aIRIGvNhGSLs~ril~ryGdtp~gMVeS 261 (640)
.+-|= +.+ .+ .+..+-+.|++.|. .+=|=+|.| |.|+|-+|+ .
T Consensus 92 --~~~~~-i~s------------~~----------~~~~l~~~a~~~~~~~~vhlkvDtG------m~R~G~~~~----e 136 (353)
T cd06815 92 --ADISL-NSE------------LE----------TIKALSEEAKKQGKIHKIILMVDLG------DLREGVLPE----D 136 (353)
T ss_pred --cceec-cCh------------HH----------HHHHHHHHHHHcCCccceEEEEecC------CCccccCHH----H
Confidence 11111 111 11 23445555666654 345567888 589998873 4
Q ss_pred HHHHHHHHHHCC
Q 006566 262 AFEFARICRKLD 273 (640)
Q Consensus 262 Ale~~~i~e~~~ 273 (640)
++++++.+.++.
T Consensus 137 ~~~~~~~i~~~~ 148 (353)
T cd06815 137 LLDFVEEILKLP 148 (353)
T ss_pred HHHHHHHHhCCC
Confidence 677777776653
No 102
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=85.27 E-value=33 Score=39.46 Aligned_cols=146 Identities=12% Similarity=0.098 Sum_probs=87.6
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecC--CHHHHHHHHHHHHHhhcCCC-Ccceee-------ccCCCHHHHH-HHhhh-
Q 006566 114 TKDVAGTVEEVMRIADQGADLVRITVQ--GKREADACFEIKNSLVQKNY-NIPLVA-------DIHFAPSVAL-RVAEC- 181 (640)
Q Consensus 114 T~Dv~atv~Qi~rl~~aGceiVRvtvp--~~~~A~~l~~I~~~L~~~g~-~iPLVA-------DIHF~~~~Al-~Aa~~- 181 (640)
..+++.-++=+..|.++|.+.|=+..| +..+.+.++.|.+. +. +..+++ |+......+. .++++
T Consensus 23 ~~s~e~Kl~ia~~L~~~Gvd~IEvG~p~as~~d~~~~~~i~~~----~l~~~~i~~~~~~~~~~i~~~~d~~~e~~~~~g 98 (524)
T PRK12344 23 SFSVEDKLRIARKLDELGVDYIEGGWPGSNPKDTEFFKRAKEL----KLKHAKLAAFGSTRRAGVSAEEDPNLQALLDAG 98 (524)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcCCcCChhHHHHHHHHHHh----CCCCcEEEEEeeccccCCCcccHHHHHHHHhCC
Confidence 467788899999999999999999765 56677888888762 21 233333 5543333333 34445
Q ss_pred cCceeeC-CCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCCChHHHHH
Q 006566 182 FDKIRVN-PGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVE 260 (640)
Q Consensus 182 v~KVRIN-PGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGdtp~gMVe 260 (640)
++-|+|- |-.=...+++ +..-.+.+-+.+.+.|+.||++|..++.+.-|-+=.-| .+| +
T Consensus 99 ~~~i~i~~~~Sd~h~~~~----------l~~s~~e~l~~~~~~v~~ak~~G~~v~~~~e~~~Da~r------~d~----~ 158 (524)
T PRK12344 99 TPVVTIFGKSWDLHVTEA----------LRTTLEENLAMIRDSVAYLKAHGREVIFDAEHFFDGYK------ANP----E 158 (524)
T ss_pred CCEEEEEECCCHHHHHHH----------cCCCHHHHHHHHHHHHHHHHHcCCeEEEcccccccccc------CCH----H
Confidence 6777753 3221111111 11123445667889999999999988876642111001 123 4
Q ss_pred HHHHHHHHHHHCCCCcEEEEEEeCC
Q 006566 261 SAFEFARICRKLDFHNFLFSMKASN 285 (640)
Q Consensus 261 SAle~~~i~e~~~F~diviSmKsSn 285 (640)
-+++.++.+.+.|-+.|. ++.+.
T Consensus 159 ~l~~~~~~~~~~Gad~i~--l~DTv 181 (524)
T PRK12344 159 YALATLKAAAEAGADWVV--LCDTN 181 (524)
T ss_pred HHHHHHHHHHhCCCCeEE--EccCC
Confidence 455666667788888654 66543
No 103
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=85.13 E-value=3.4 Score=41.17 Aligned_cols=72 Identities=28% Similarity=0.421 Sum_probs=50.7
Q ss_pred HHHHHHHHHHcCCCEEEEecCCHH--HHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhh-cCceeeCCCCCC
Q 006566 120 TVEEVMRIADQGADLVRITVQGKR--EADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGNFA 193 (640)
Q Consensus 120 tv~Qi~rl~~aGceiVRvtvp~~~--~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~-v~KVRINPGN~~ 193 (640)
+.+|+..+.++|+++|=+-.+... +.+.+.++.+.+++.+ ++|+++++| ++.-|..+.+. ++=|-+|+..+.
T Consensus 81 ~~~~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g-~~~iiv~v~-t~~ea~~a~~~G~d~i~~~~~g~t 155 (219)
T cd04729 81 TIEEVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEY-NCLLMADIS-TLEEALNAAKLGFDIIGTTLSGYT 155 (219)
T ss_pred CHHHHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHh-CCeEEEECC-CHHHHHHHHHcCCCEEEccCcccc
Confidence 567999999999998876543321 1123444444555557 899999987 77888888888 888888775443
No 104
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=84.91 E-value=14 Score=38.41 Aligned_cols=102 Identities=24% Similarity=0.274 Sum_probs=69.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCC---------HHHH-----------HHHHHHHHHhhcCCCCcceeeccCCCH---
Q 006566 116 DVAGTVEEVMRIADQGADLVRITVQG---------KREA-----------DACFEIKNSLVQKNYNIPLVADIHFAP--- 172 (640)
Q Consensus 116 Dv~atv~Qi~rl~~aGceiVRvtvp~---------~~~A-----------~~l~~I~~~L~~~g~~iPLVADIHF~~--- 172 (640)
|.+.|++-++.|.++|||++=+-+|- +++| +.+-++.+++|+...++|++--.=+||
T Consensus 22 ~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv~m~Y~Npi~~ 101 (256)
T TIGR00262 22 TLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIGLLTYYNLIFR 101 (256)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHhh
Confidence 78999999999999999999999986 2221 122233445666668999986666676
Q ss_pred ----HHHHHHhhh-cCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCC
Q 006566 173 ----SVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGS 242 (640)
Q Consensus 173 ----~~Al~Aa~~-v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGS 242 (640)
+....++++ ++-|=|..--+ +...++++.||++|...=.=+|-.+
T Consensus 102 ~G~e~f~~~~~~aGvdgviipDlp~-------------------------ee~~~~~~~~~~~gl~~i~lv~P~T 151 (256)
T TIGR00262 102 KGVEEFYAKCKEVGVDGVLVADLPL-------------------------EESGDLVEAAKKHGVKPIFLVAPNA 151 (256)
T ss_pred hhHHHHHHHHHHcCCCEEEECCCCh-------------------------HHHHHHHHHHHHCCCcEEEEECCCC
Confidence 556677777 77766552111 1267799999999987533344444
No 105
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=84.89 E-value=21 Score=38.67 Aligned_cols=144 Identities=15% Similarity=0.156 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHc-C-----CCEEEEe--cCCHHHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhhcCceeeC
Q 006566 117 VAGTVEEVMRIADQ-G-----ADLVRIT--VQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVN 188 (640)
Q Consensus 117 v~atv~Qi~rl~~a-G-----ceiVRvt--vp~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~v~KVRIN 188 (640)
+++-.++|....+. | .+-|-+- +|+.-..+.|..|.+.+++. .++.-|+ ++ -+-.|
T Consensus 39 ~~~l~~Ei~~~~~~~~~~~~~i~~i~~GGGTPs~l~~~~l~~ll~~i~~~---~~~~~~~-----------e~--t~e~~ 102 (375)
T PRK05628 39 LDALRAELELAAAVLGDPAPPVSTVFVGGGTPSLLGAEGLARVLDAVRDT---FGLAPGA-----------EV--TTEAN 102 (375)
T ss_pred HHHHHHHHHHHHHhhccCCCceeEEEeCCCccccCCHHHHHHHHHHHHHh---CCCCCCC-----------EE--EEEeC
Confidence 46666666655432 2 4455553 78766667777777665431 1221121 22 13569
Q ss_pred CCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCCChHHHHHHHHHHHHH
Q 006566 189 PGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARI 268 (640)
Q Consensus 189 PGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGdtp~gMVeSAle~~~i 268 (640)
|.++.+ +.++..|+.|+. ||-+--=|.++++++.+|-. .-++.+++-++.
T Consensus 103 p~~i~~---------------------------e~l~~l~~~G~~-rvslGvQS~~~~~L~~l~R~--~s~~~~~~a~~~ 152 (375)
T PRK05628 103 PESTSP---------------------------EFFAALRAAGFT-RVSLGMQSAAPHVLAVLDRT--HTPGRAVAAARE 152 (375)
T ss_pred CCCCCH---------------------------HHHHHHHHcCCC-EEEEecccCCHHHHHHcCCC--CCHHHHHHHHHH
Confidence 988743 235666777763 55555577889999999832 123456677788
Q ss_pred HHHCCCCcEEEEEEeCChhhHHHHHHHHHHHHHHcCCC
Q 006566 269 CRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWD 306 (640)
Q Consensus 269 ~e~~~F~diviSmKsSn~~~mV~AyRlL~~~m~~~g~d 306 (640)
+++.||.++.+.+=.-=|..+.+.++.-.+.+.+.+.+
T Consensus 153 l~~~g~~~v~~dli~GlPgqt~~~~~~tl~~~~~l~~~ 190 (375)
T PRK05628 153 ARAAGFEHVNLDLIYGTPGESDDDWRASLDAALEAGVD 190 (375)
T ss_pred HHHcCCCcEEEEEeccCCCCCHHHHHHHHHHHHhcCCC
Confidence 89999998887765433556667776666666555543
No 106
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=84.56 E-value=3.9 Score=43.71 Aligned_cols=115 Identities=21% Similarity=0.262 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHcCCCEEEEec----CCHH---------------------------------HHHHHHHHHHHhhcCCCC
Q 006566 119 GTVEEVMRIADQGADLVRITV----QGKR---------------------------------EADACFEIKNSLVQKNYN 161 (640)
Q Consensus 119 atv~Qi~rl~~aGceiVRvtv----p~~~---------------------------------~A~~l~~I~~~L~~~g~~ 161 (640)
+|+++.++-+++|+|+||-|- +++. .-+-|+++++. .+
T Consensus 120 stleEal~a~~~Gad~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~-----~~ 194 (283)
T cd04727 120 RNLGEALRRISEGAAMIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYELVKETAKL-----GR 194 (283)
T ss_pred CCHHHHHHHHHCCCCEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHHHHHHHHh-----cC
Confidence 468888999999999999993 4311 11345566553 56
Q ss_pred ccee--eccCC-CHHHHHHHhhh-cCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEe
Q 006566 162 IPLV--ADIHF-APSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIG 237 (640)
Q Consensus 162 iPLV--ADIHF-~~~~Al~Aa~~-v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIG 237 (640)
+|+| |--.. +|.-|..+++. ++.|=+.=+=+...+ ..-.-.+|.+.++++.+ ...|++..+..|-+| .|
T Consensus 195 iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~a~d-----P~~~tk~f~~ai~~~~~-~~~~~e~~~~~~~~m-~~ 267 (283)
T cd04727 195 LPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSEN-----PEKRARAIVEAVTHYDD-PEILAEVSEGLGEAM-VG 267 (283)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhcCCC-----HHHHHHHHHHHHHhcCC-HHHHHHHHcccccCC-CC
Confidence 9998 99998 99999999998 888876554432111 11123457777888777 788899989999888 68
Q ss_pred eCCCCCcH
Q 006566 238 TNHGSLSD 245 (640)
Q Consensus 238 vNhGSLs~ 245 (640)
.|-.||..
T Consensus 268 ~~~~~~~~ 275 (283)
T cd04727 268 IDIASLKE 275 (283)
T ss_pred cccccCCH
Confidence 88888865
No 107
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=84.55 E-value=15 Score=39.63 Aligned_cols=102 Identities=17% Similarity=0.239 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHcCCCEEEEecC---CHHHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhh-cCceee--CCCC
Q 006566 118 AGTVEEVMRIADQGADLVRITVQ---GKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRV--NPGN 191 (640)
Q Consensus 118 ~atv~Qi~rl~~aGceiVRvtvp---~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~-v~KVRI--NPGN 191 (640)
+...+++..|.++|+++|=|.+. +..-.+.++.||+. +-++|+++.-=.++..|..++++ +|-|.+ -||.
T Consensus 93 ~~~~~~~~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~----~p~v~Vi~G~v~t~~~A~~l~~aGaD~I~vg~g~G~ 168 (325)
T cd00381 93 EDDKERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKK----YPNVDVIAGNVVTAEAARDLIDAGADGVKVGIGPGS 168 (325)
T ss_pred hhHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHH----CCCceEEECCCCCHHHHHHHHhcCCCEEEECCCCCc
Confidence 44678999999999999888652 23345566777764 22499998444889999999999 999997 4765
Q ss_pred CCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeE
Q 006566 192 FADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAV 234 (640)
Q Consensus 192 ~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aI 234 (640)
....+. . .+.- ...-..+..+.+.|+++++|+
T Consensus 169 ~~~t~~-~---~g~g-------~p~~~~i~~v~~~~~~~~vpV 200 (325)
T cd00381 169 ICTTRI-V---TGVG-------VPQATAVADVAAAARDYGVPV 200 (325)
T ss_pred Ccccce-e---CCCC-------CCHHHHHHHHHHHHhhcCCcE
Confidence 432111 0 0000 001123556677788888887
No 108
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=84.25 E-value=19 Score=33.95 Aligned_cols=89 Identities=18% Similarity=0.179 Sum_probs=57.9
Q ss_pred CCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHH-----H---HHHHHHHHHHhhcCCCCcceeeccC---
Q 006566 101 EHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKR-----E---ADACFEIKNSLVQKNYNIPLVADIH--- 169 (640)
Q Consensus 101 ~~PI~VQSMt~t~T~Dv~atv~Qi~rl~~aGceiVRvtvp~~~-----~---A~~l~~I~~~L~~~g~~iPLVADIH--- 169 (640)
.-||.++...++....++.+++++++..++|||.+=+..|--- + .+-+++|.+.. +.++|++....
T Consensus 48 ~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~pv~iy~~p~~ 124 (201)
T cd00945 48 DVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAA---DGGLPLKVILETRG 124 (201)
T ss_pred CCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHh---cCCceEEEEEECCC
Confidence 4566777666665566999999999999999999988766421 1 23334444431 35789987653
Q ss_pred C-CHHHHHH----Hhhh-cCceeeCCCCC
Q 006566 170 F-APSVALR----VAEC-FDKIRVNPGNF 192 (640)
Q Consensus 170 F-~~~~Al~----Aa~~-v~KVRINPGN~ 192 (640)
+ ++..-.+ +.+. ++-|-..+|..
T Consensus 125 ~~~~~~~~~~~~~~~~~g~~~iK~~~~~~ 153 (201)
T cd00945 125 LKTADEIAKAARIAAEAGADFIKTSTGFG 153 (201)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEeCCCCC
Confidence 3 4443332 3333 77787777754
No 109
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=84.11 E-value=46 Score=35.95 Aligned_cols=206 Identities=17% Similarity=0.204 Sum_probs=120.4
Q ss_pred eEEEceeecCCCCceEEEeccCCCCCC---HHHHHHHHHHHHHcCCCEEEEe----------------cCCHHHHHHHHH
Q 006566 90 TVMVGNVAIGSEHPIRVQTMTTNDTKD---VAGTVEEVMRIADQGADLVRIT----------------VQGKREADACFE 150 (640)
Q Consensus 90 ~V~VG~v~IGG~~PI~VQSMt~t~T~D---v~atv~Qi~rl~~aGceiVRvt----------------vp~~~~A~~l~~ 150 (640)
+++||++.+ -|-|..-.|++.-..| ++..++--.+.++-|+-+|=.- .-+.+..+.+++
T Consensus 4 P~~ig~~~l--kNRiv~~p~~~~~~~~~~~~~~~~~~y~~rA~gG~glii~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~ 81 (353)
T cd02930 4 PLDLGFTTL--RNRVLMGSMHTGLEELDDGIDRLAAFYAERARGGVGLIVTGGFAPNEAGKLGPGGPVLNSPRQAAGHRL 81 (353)
T ss_pred CeeECCEEE--ccccEeCCccccccCCCCCCHHHHHHHHHHhcCCceEEEEeeEEeCCcccCCCCCcccCCHHHHHHHHH
Confidence 567777777 7888888887322111 5677777777788787776111 224567888999
Q ss_pred HHHHhhcCCCCcceeeccCCCHHHHHHHhhhcCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHc
Q 006566 151 IKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKY 230 (640)
Q Consensus 151 I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~ 230 (640)
+.+..++.|.. +++=++..-+.+. .+.=+-|.++..........+.|+ +|++.|.+.|..-.+.|++.
T Consensus 82 l~~~vh~~g~~--~~~QL~h~G~~~~------~~~~~~ps~~~~~~~~~~p~~mt~----~eI~~i~~~f~~aA~~a~~a 149 (353)
T cd02930 82 ITDAVHAEGGK--IALQILHAGRYAY------HPLCVAPSAIRAPINPFTPRELSE----EEIEQTIEDFARCAALAREA 149 (353)
T ss_pred HHHHHHHcCCE--EEeeccCCCCCCC------CCCCcCCCCCCCCCCCCCCCCCCH----HHHHHHHHHHHHHHHHHHHc
Confidence 99988887764 5555432211110 001123333322111111123343 57778888898888999998
Q ss_pred CC-eEEEeeCCCCCcHhHHH--------HhCCChHHHHHHHHHHHHHHHH-CCCCcEEEEEEeCChh-----hHHHHHHH
Q 006566 231 GR-AVRIGTNHGSLSDRIMS--------YYGDSPRGMVESAFEFARICRK-LDFHNFLFSMKASNPV-----VMVQAYRL 295 (640)
Q Consensus 231 g~-aIRIGvNhGSLs~ril~--------ryGdtp~gMVeSAle~~~i~e~-~~F~diviSmKsSn~~-----~mV~AyRl 295 (640)
|- .|=|-.-||-|=..+++ +||.+.+.=..-++|.++-.++ .| .++.|.+|-|-.. ...+....
T Consensus 150 GfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG-~d~~v~iRi~~~D~~~~g~~~~e~~~ 228 (353)
T cd02930 150 GYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVG-EDFIIIYRLSMLDLVEGGSTWEEVVA 228 (353)
T ss_pred CCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcC-CCceEEEEecccccCCCCCCHHHHHH
Confidence 86 56665556655444443 5776665545555566654444 33 3667777766321 23455567
Q ss_pred HHHHHHHcCCCcceEE
Q 006566 296 LVAEMYVHGWDYPLHL 311 (640)
Q Consensus 296 L~~~m~~~g~dyPLHL 311 (640)
++++|++.|+|| +|+
T Consensus 229 i~~~Le~~G~d~-i~v 243 (353)
T cd02930 229 LAKALEAAGADI-LNT 243 (353)
T ss_pred HHHHHHHcCCCE-EEe
Confidence 777777777765 344
No 110
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=84.10 E-value=20 Score=33.82 Aligned_cols=130 Identities=14% Similarity=0.152 Sum_probs=84.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCCCcceeeccCCCH---------HHHHHHhhh-cCce
Q 006566 116 DVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAP---------SVALRVAEC-FDKI 185 (640)
Q Consensus 116 Dv~atv~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~---------~~Al~Aa~~-v~KV 185 (640)
|.+...+.++++.++|++-|.+.- +.++.+++... +..+|+++=+=.+- ..|..|.+. ++.|
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g------~~i~~~~~~~~--~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i 82 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP------GYVRLAADALA--GSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEI 82 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH------HHHHHHHHHhC--CCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEE
Confidence 899999999999999999887774 55666666422 33689888664432 455566666 7777
Q ss_pred eeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCCChHHHHHHHHHH
Q 006566 186 RVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEF 265 (640)
Q Consensus 186 RINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGdtp~gMVeSAle~ 265 (640)
=+-| ++.-... . ..+.+.+.|+.+.+.| +.++|+-|..+-+.. .+++ .-.+.
T Consensus 83 ~v~~-~~~~~~~---~----------~~~~~~~~~~~i~~~~-~~~~pv~iy~~p~~~---------~~~~----~~~~~ 134 (201)
T cd00945 83 DVVI-NIGSLKE---G----------DWEEVLEEIAAVVEAA-DGGLPLKVILETRGL---------KTAD----EIAKA 134 (201)
T ss_pred EEec-cHHHHhC---C----------CHHHHHHHHHHHHHHh-cCCceEEEEEECCCC---------CCHH----HHHHH
Confidence 7644 2221100 0 0245566677777777 779999888865533 2332 23355
Q ss_pred HHHHHHCCCCcEEEEE
Q 006566 266 ARICRKLDFHNFLFSM 281 (640)
Q Consensus 266 ~~i~e~~~F~diviSm 281 (640)
++++++.|+.=|+.|.
T Consensus 135 ~~~~~~~g~~~iK~~~ 150 (201)
T cd00945 135 ARIAAEAGADFIKTST 150 (201)
T ss_pred HHHHHHhCCCEEEeCC
Confidence 7777888887666553
No 111
>PRK06245 cofG FO synthase subunit 1; Reviewed
Probab=84.02 E-value=29 Score=36.87 Aligned_cols=145 Identities=12% Similarity=0.118 Sum_probs=80.3
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEe---cCCHH---------------HHHHHHHHHHHhhcCCCCcceeeccCCCHHHH
Q 006566 114 TKDVAGTVEEVMRIADQGADLVRIT---VQGKR---------------EADACFEIKNSLVQKNYNIPLVADIHFAPSVA 175 (640)
Q Consensus 114 T~Dv~atv~Qi~rl~~aGceiVRvt---vp~~~---------------~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~A 175 (640)
.++.+..+++++++.+.|+.-|-++ .|+.. -.+.+++|.+.+.+.|. .|-+.=-.+++...
T Consensus 40 ~ls~eei~~~~~~~~~~G~~ei~l~gG~~p~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~~g~-~~~~~~~~lt~e~i 118 (336)
T PRK06245 40 LLSPEEVKEILRRGADAGCTEALFTFGEVPDESYERIKEQLAEMGYSSILEYLYDLCELALEEGL-LPHTNAGILTREEM 118 (336)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEecCCCCccchhhhhhhhhhhhHHHHHHHHHHHHHHHhhcCC-CccccCCCCCHHHH
Confidence 6788999999999999999998888 33322 24555566555544444 34222223444544
Q ss_pred HHHhhhcCceeeCCCCCCchhhhcc--ccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCC
Q 006566 176 LRVAECFDKIRVNPGNFADRRAQFE--QLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGD 253 (640)
Q Consensus 176 l~Aa~~v~KVRINPGN~~d~~k~F~--~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGd 253 (640)
..-.++-.-+=++|+...+.- ++ +..++...|+ .....++.|++.|+++..|.--| + |.
T Consensus 119 ~~Lk~ag~~l~~~~et~~e~l--~~~v~~~~~~~~~~--------~~l~~i~~a~~~Gi~~~~~~i~G-~--------gE 179 (336)
T PRK06245 119 EKLKEVNASMGLMLEQTSPRL--LNTVHRGSPGKDPE--------LRLETIENAGKLKIPFTTGILIG-I--------GE 179 (336)
T ss_pred HHHHHhCCCCCCCccccchhh--HHhhccCCCCCCHH--------HHHHHHHHHHHcCCceeeeeeeE-C--------CC
Confidence 433333112345665554311 11 1112222222 23556778888998876666444 2 45
Q ss_pred ChHHHHHHHHHHHHHHHHCC-CCcEE
Q 006566 254 SPRGMVESAFEFARICRKLD-FHNFL 278 (640)
Q Consensus 254 tp~gMVeSAle~~~i~e~~~-F~div 278 (640)
|.+-.+++.....++-.+.| |..+.
T Consensus 180 t~ed~~~~l~~l~~l~~~~gg~~~~~ 205 (336)
T PRK06245 180 TWEDRAESLEAIAELHERYGHIQEVI 205 (336)
T ss_pred CHHHHHHHHHHHHHHHHhhCCCcEEe
Confidence 77777776555555544443 55444
No 112
>TIGR00035 asp_race aspartate racemase.
Probab=83.95 E-value=23 Score=35.77 Aligned_cols=41 Identities=17% Similarity=0.404 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCCCccee
Q 006566 118 AGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLV 165 (640)
Q Consensus 118 ~atv~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~iPLV 165 (640)
+...+-+++|+++|||.|=+++.+.... +..|++. +++|++
T Consensus 62 ~~l~~~~~~L~~~g~d~iviaCNTah~~--~~~l~~~-----~~iPii 102 (229)
T TIGR00035 62 PILIDIAVKLENAGADFIIMPCNTAHKF--AEDIQKA-----IGIPLI 102 (229)
T ss_pred HHHHHHHHHHHHcCCCEEEECCccHHHH--HHHHHHh-----CCCCEe
Confidence 4567778899999999999999995554 6677774 789986
No 113
>PRK01261 aroD 3-dehydroquinate dehydratase; Provisional
Probab=83.89 E-value=3.9 Score=42.20 Aligned_cols=76 Identities=18% Similarity=0.273 Sum_probs=52.6
Q ss_pred eeEEEceeecCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEE--EEecCCHHHHHHHHHHHHHhhcCCCCcceee
Q 006566 89 RTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLV--RITVQGKREADACFEIKNSLVQKNYNIPLVA 166 (640)
Q Consensus 89 r~V~VG~v~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~rl~~aGceiV--Rvtvp~~~~A~~l~~I~~~L~~~g~~iPLVA 166 (640)
-.+.|+++.||++.|..+=|.+-++ .+...+|++++...|||+| |+-.-...+.+.+.++-+.|++ ++.|++.
T Consensus 7 ~~~~v~~~~~g~~~p~Icvpi~~~~---~ee~~~~~~~~~~~~aDivE~RlD~l~~~~~~~~~~~~~~l~~--~~~p~I~ 81 (229)
T PRK01261 7 DKISIGKFVIGNMQPIVVESIFFKD---IKEMKERFKTKVLSDKNLYEIRFDLFHDHSIESEPEIISALNE--MDIDYIF 81 (229)
T ss_pred CeEEEeCeEeCCCCcEEEEEeCCCC---HHHHHHHHHHhhcCCCCEEEEEeeccCCCChHHHHHHHHHHhh--cCCCEEE
Confidence 3578999999999999998887665 4556677788888999995 5553333344444454444443 3789987
Q ss_pred ccC
Q 006566 167 DIH 169 (640)
Q Consensus 167 DIH 169 (640)
=+-
T Consensus 82 T~R 84 (229)
T PRK01261 82 TYR 84 (229)
T ss_pred EEc
Confidence 543
No 114
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=83.58 E-value=7.9 Score=35.77 Aligned_cols=78 Identities=15% Similarity=0.205 Sum_probs=53.5
Q ss_pred eccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHH-------HHHHHHHhhcCCCCcceeeccCCCHHH------
Q 006566 108 TMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADA-------CFEIKNSLVQKNYNIPLVADIHFAPSV------ 174 (640)
Q Consensus 108 SMt~t~T~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~A~~-------l~~I~~~L~~~g~~iPLVADIHF~~~~------ 174 (640)
||+++.- +..+++++++.+.|+++|-+-......... +..+++ .+++|+++++=.+...
T Consensus 5 ~~~~~~~---~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 76 (200)
T cd04722 5 LLAGGPS---GDPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAA-----ETDLPLGVQLAINDAAAAVDIA 76 (200)
T ss_pred ccccCch---HHHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHh-----hcCCcEEEEEccCCchhhhhHH
Confidence 5655544 788999999999999999888755433322 445554 4789999987443222
Q ss_pred HHHHhhh-cCceeeCCCCCC
Q 006566 175 ALRVAEC-FDKIRVNPGNFA 193 (640)
Q Consensus 175 Al~Aa~~-v~KVRINPGN~~ 193 (640)
|..+.+. ++-|=||.++.-
T Consensus 77 a~~~~~~g~d~v~l~~~~~~ 96 (200)
T cd04722 77 AAAARAAGADGVEIHGAVGY 96 (200)
T ss_pred HHHHHHcCCCEEEEeccCCc
Confidence 2355566 888988888753
No 115
>PRK05660 HemN family oxidoreductase; Provisional
Probab=83.48 E-value=27 Score=38.13 Aligned_cols=144 Identities=15% Similarity=0.154 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHH----cCCCEEEEe--cCCHHHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhhcCceeeCCC
Q 006566 117 VAGTVEEVMRIAD----QGADLVRIT--VQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPG 190 (640)
Q Consensus 117 v~atv~Qi~rl~~----aGceiVRvt--vp~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~v~KVRINPG 190 (640)
+++.++||..-.. .+++-|-+. +|+.-.++.|..|-+.+++. .|+.-|. +. .+=.||+
T Consensus 40 ~~~l~~Ei~~~~~~~~~~~v~ti~~GGGtPs~l~~~~l~~ll~~l~~~---~~~~~~~-----------ei--t~e~np~ 103 (378)
T PRK05660 40 VDHLLADLDADLPLVQGREVHSIFIGGGTPSLFSAEAIQRLLDGVRAR---LPFAPDA-----------EI--TMEANPG 103 (378)
T ss_pred HHHHHHHHHHHhHhccCCceeEEEeCCCccccCCHHHHHHHHHHHHHh---CCCCCCc-----------EE--EEEeCcC
Confidence 6777777764222 356666665 88887788888877765532 2332222 11 1234999
Q ss_pred CCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCCChHHHHHHHHHHHHHHH
Q 006566 191 NFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICR 270 (640)
Q Consensus 191 N~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGdtp~gMVeSAle~~~i~e 270 (640)
.+-. + .++..|+.|+- ||-+.-=|++++++.+.|.. .-++.+++-++.++
T Consensus 104 ~l~~-e--------------------------~l~~Lk~~Gv~-risiGvqS~~~~~L~~l~r~--~~~~~~~~ai~~~~ 153 (378)
T PRK05660 104 TVEA-D--------------------------RFVGYQRAGVN-RISIGVQSFSEEKLKRLGRI--HGPDEAKRAAKLAQ 153 (378)
T ss_pred cCCH-H--------------------------HHHHHHHcCCC-EEEeccCcCCHHHHHHhCCC--CCHHHHHHHHHHHH
Confidence 9843 2 35777888865 88887789999999998831 12466777788899
Q ss_pred HCCCCcEEEEEEeCChhhHHHHHHHHHHHHHHcCCC
Q 006566 271 KLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWD 306 (640)
Q Consensus 271 ~~~F~diviSmKsSn~~~mV~AyRlL~~~m~~~g~d 306 (640)
+.||.++.+.+=--=|..+.+..+...+.+.+.|.+
T Consensus 154 ~~G~~~v~~dli~Glpgqt~~~~~~~l~~~~~l~p~ 189 (378)
T PRK05660 154 GLGLRSFNLDLMHGLPDQSLEEALDDLRQAIALNPP 189 (378)
T ss_pred HcCCCeEEEEeecCCCCCCHHHHHHHHHHHHhcCCC
Confidence 999988777766554556677777766666655644
No 116
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=83.43 E-value=12 Score=38.23 Aligned_cols=112 Identities=15% Similarity=0.223 Sum_probs=88.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhh-cCceeeCCCCCC
Q 006566 115 KDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGNFA 193 (640)
Q Consensus 115 ~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~-v~KVRINPGN~~ 193 (640)
.|.+..++-++.|.+.|...+=||..+....+.++.++++. -++.+=|=-=.++.-|..|+++ ++=| +-||=
T Consensus 17 ~~~e~a~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~----~~~~vGAGTVl~~~~a~~a~~aGA~Fi-vsP~~-- 89 (204)
T TIGR01182 17 DDVDDALPLAKALIEGGLRVLEVTLRTPVALDAIRLLRKEV----PDALIGAGTVLNPEQLRQAVDAGAQFI-VSPGL-- 89 (204)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHC----CCCEEEEEeCCCHHHHHHHHHcCCCEE-ECCCC--
Confidence 47899999999999999999999999999999999999852 1377777788899999999998 5555 78862
Q ss_pred chhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCCChHHHHHHHHHHHHHHHHCC
Q 006566 194 DRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLD 273 (640)
Q Consensus 194 d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGdtp~gMVeSAle~~~i~e~~~ 273 (640)
+ .++++.|+++|++.==|+ -||-. +.-+.+.|
T Consensus 90 ~--------------------------~~v~~~~~~~~i~~iPG~--------------~TptE--------i~~A~~~G 121 (204)
T TIGR01182 90 T--------------------------PELAKHAQDHGIPIIPGV--------------ATPSE--------IMLALELG 121 (204)
T ss_pred C--------------------------HHHHHHHHHcCCcEECCC--------------CCHHH--------HHHHHHCC
Confidence 2 258999999999983333 47743 34467889
Q ss_pred CCcEEEEE
Q 006566 274 FHNFLFSM 281 (640)
Q Consensus 274 F~diviSm 281 (640)
++-++|-=
T Consensus 122 a~~vKlFP 129 (204)
T TIGR01182 122 ITALKLFP 129 (204)
T ss_pred CCEEEECC
Confidence 98888764
No 117
>PRK00915 2-isopropylmalate synthase; Validated
Probab=83.39 E-value=79 Score=36.28 Aligned_cols=160 Identities=8% Similarity=0.080 Sum_probs=96.3
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecC--CHHHHHHHHHHHHHhhcCCCCcceeeccCCC---HHHHHHHhhhcCceeeC
Q 006566 114 TKDVAGTVEEVMRIADQGADLVRITVQ--GKREADACFEIKNSLVQKNYNIPLVADIHFA---PSVALRVAECFDKIRVN 188 (640)
Q Consensus 114 T~Dv~atv~Qi~rl~~aGceiVRvtvp--~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~---~~~Al~Aa~~v~KVRIN 188 (640)
...++.-++=+..|.++|.+.|=+..| +.+|.+.++.|.+.+ -+..+.|=.--+ -+.|.+|...+..-||+
T Consensus 22 ~~s~e~K~~ia~~L~~~Gv~~IE~G~p~~s~~d~~~v~~i~~~~----~~~~i~a~~r~~~~did~a~~a~~~~~~~~v~ 97 (513)
T PRK00915 22 SLTVEEKLQIAKQLERLGVDVIEAGFPASSPGDFEAVKRIARTV----KNSTVCGLARAVKKDIDAAAEALKPAEAPRIH 97 (513)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcCCCCChHHHHHHHHHHhhC----CCCEEEEEccCCHHHHHHHHHHhhcCCCCEEE
Confidence 456788888889999999999999876 578899998887653 234444422222 23344443333333333
Q ss_pred ---CCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCCChHHHHHHHHHH
Q 006566 189 ---PGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEF 265 (640)
Q Consensus 189 ---PGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGdtp~gMVeSAle~ 265 (640)
|.+=...+.+ +....+.+-+.+.+.|+.||++|.-++++.-.+|-. +| +-+++.
T Consensus 98 i~~~~Sd~h~~~~----------l~~s~~e~l~~~~~~v~~ak~~g~~v~f~~ed~~r~---------d~----~~l~~~ 154 (513)
T PRK00915 98 TFIATSPIHMEYK----------LKMSREEVLEMAVEAVKYARSYTDDVEFSAEDATRT---------DL----DFLCRV 154 (513)
T ss_pred EEECCcHHHHHHH----------hCCCHHHHHHHHHHHHHHHHHCCCeEEEEeCCCCCC---------CH----HHHHHH
Confidence 3221111111 222345566678889999999999998887544422 22 445566
Q ss_pred HHHHHHCCCCcEEEEEEeCChhhHHHHHHHHHHHHHH
Q 006566 266 ARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYV 302 (640)
Q Consensus 266 ~~i~e~~~F~diviSmKsSn~~~mV~AyRlL~~~m~~ 302 (640)
++.+.+.|-+ .|++..++=..+=..+..+++.+.+
T Consensus 155 ~~~~~~~Ga~--~i~l~DTvG~~~P~~~~~~i~~l~~ 189 (513)
T PRK00915 155 VEAAIDAGAT--TINIPDTVGYTTPEEFGELIKTLRE 189 (513)
T ss_pred HHHHHHcCCC--EEEEccCCCCCCHHHHHHHHHHHHH
Confidence 6666777754 4677766554444555555555543
No 118
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=83.31 E-value=18 Score=38.57 Aligned_cols=116 Identities=14% Similarity=0.265 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCCCcceeeccCCCH--HHHHHHhhhcCceee-------
Q 006566 117 VAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAP--SVALRVAECFDKIRV------- 187 (640)
Q Consensus 117 v~atv~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~--~~Al~Aa~~v~KVRI------- 187 (640)
.+...+++.++.+.|..-+.+-+...++.+.++.|++.+ | ++.|..|-+-.+ .-|. .++.+++.-|
T Consensus 138 ~~~~~~~~~~~~~~Gf~~~KiKv~~~~d~~~l~~vr~~~---g-~~~l~lDaN~~~~~~~a~-~~~~l~~~~i~~iEeP~ 212 (354)
T cd03317 138 VEQLLKQIERYLEEGYKRIKLKIKPGWDVEPLKAVRERF---P-DIPLMADANSAYTLADIP-LLKRLDEYGLLMIEQPL 212 (354)
T ss_pred HHHHHHHHHHHHHcCCcEEEEecChHHHHHHHHHHHHHC---C-CCeEEEECCCCCCHHHHH-HHHHhhcCCccEEECCC
Confidence 478899999999999999988875556788888888763 5 788898887543 3332 1222333222
Q ss_pred CCCCCC---chhhhccc------cccchHHHHHHHhh-------h-------HhhHHHHHHHHHHcCCeEEEe
Q 006566 188 NPGNFA---DRRAQFEQ------LEYTDDEYQKELQH-------I-------EEVFSPLVEKCKKYGRAVRIG 237 (640)
Q Consensus 188 NPGN~~---d~~k~F~~------~eYtdeeY~~Ele~-------I-------~~~f~~lV~~~Ke~g~aIRIG 237 (640)
.|.++. .=++.... ..+|-+++.+-++. | -..+..+...|+.+|+++=+|
T Consensus 213 ~~~d~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~d~~~ik~~~~GGit~~~~i~~~A~~~gi~~~~g 285 (354)
T cd03317 213 AADDLIDHAELQKLLKTPICLDESIQSAEDARKAIELGACKIINIKPGRVGGLTEALKIHDLCQEHGIPVWCG 285 (354)
T ss_pred ChhHHHHHHHHHhhcCCCEEeCCccCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHcCCcEEec
Confidence 222211 11111221 23343345554432 1 134678899999999998554
No 119
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=83.08 E-value=8.7 Score=40.31 Aligned_cols=94 Identities=19% Similarity=0.294 Sum_probs=66.4
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCCCcceeeccCC-CHHHHHHHhh--hcCceeeCCCCC
Q 006566 116 DVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHF-APSVALRVAE--CFDKIRVNPGNF 192 (640)
Q Consensus 116 Dv~atv~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~iPLVADIHF-~~~~Al~Aa~--~v~KVRINPGN~ 192 (640)
|.+..++-.++|.+.|.+.+===++ ..+-+.++++++ .+++|+.+|=+. ++.-+...++ .++-|.+.|..+
T Consensus 189 ~~~~A~~~~~~l~~~~l~~iEeP~~-~~d~~~~~~L~~-----~~~ipIa~~E~~~~~~~~~~~~~~~~~d~v~~~~~~~ 262 (316)
T cd03319 189 TPEEAVELLRELAELGVELIEQPVP-AGDDDGLAYLRD-----KSPLPIMADESCFSAADAARLAGGGAYDGINIKLMKT 262 (316)
T ss_pred CHHHHHHHHHHHHhcCCCEEECCCC-CCCHHHHHHHHh-----cCCCCEEEeCCCCCHHHHHHHHhcCCCCEEEEecccc
Confidence 3455556666666666655532222 234556666666 488999999874 4666666666 499999999999
Q ss_pred CchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEe
Q 006566 193 ADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIG 237 (640)
Q Consensus 193 ~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIG 237 (640)
|.-.+ ..++...|+++|+++=+|
T Consensus 263 GGi~~----------------------~~~~~~~a~~~gi~~~~~ 285 (316)
T cd03319 263 GGLTE----------------------ALRIADLARAAGLKVMVG 285 (316)
T ss_pred CCHHH----------------------HHHHHHHHHHcCCCEEEE
Confidence 88543 788999999999999666
No 120
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=83.02 E-value=35 Score=40.75 Aligned_cols=210 Identities=14% Similarity=0.113 Sum_probs=127.1
Q ss_pred eEEEceeecCCCCceEEEeccCCCCCC---HHHHHHHHHHHHHcCCCEE-----------EEe-----cCCHHHHHHHHH
Q 006566 90 TVMVGNVAIGSEHPIRVQTMTTNDTKD---VAGTVEEVMRIADQGADLV-----------RIT-----VQGKREADACFE 150 (640)
Q Consensus 90 ~V~VG~v~IGG~~PI~VQSMt~t~T~D---v~atv~Qi~rl~~aGceiV-----------Rvt-----vp~~~~A~~l~~ 150 (640)
.++||++.+ .|-|.+-.|++..+.| ++..++=-.+.+.-|+=+| |.+ .=+.+..+.+++
T Consensus 402 P~~i~~~~l--~NRi~~~pm~~~~~~~g~~t~~~~~~y~~rA~gG~glii~e~~~v~~~g~~~~~~~~~~~d~~i~~~~~ 479 (765)
T PRK08255 402 PFRLRGLTL--KNRVVVSPMAMYSAVDGVPGDFHLVHLGARALGGAGLVMTEMTCVSPEGRITPGCPGLYNDEQEAAWKR 479 (765)
T ss_pred ccccCCEee--CCCccccCcccccCCCCCCCHHHHHHHHHHHcCCCcEEEECCeEECCCcCCCCCCCccCCHHHHHHHHH
Confidence 577788777 7888888887655544 6677777788888888887 221 114456789999
Q ss_pred HHHHhhcC-CCCcceeeccCCCHHHHHHHhhh------cC---ceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhH
Q 006566 151 IKNSLVQK-NYNIPLVADIHFAPSVALRVAEC------FD---KIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVF 220 (640)
Q Consensus 151 I~~~L~~~-g~~iPLVADIHF~~~~Al~Aa~~------v~---KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f 220 (640)
|.+..++. |.. +.+=++-.-+.+.....+ .. ..=+-|..+-.........+.| .+|++.|.+.|
T Consensus 480 ~~~~vh~~gg~~--i~~QL~h~Gr~~~~~~~~~~~~~~~~~~~~~~~~pS~~~~~~~~~~p~~mt----~~eI~~~i~~f 553 (765)
T PRK08255 480 IVDFVHANSDAK--IGIQLGHSGRKGSTRLGWEGIDEPLEEGNWPLISASPLPYLPGSQVPREMT----RADMDRVRDDF 553 (765)
T ss_pred HHHHHHhcCCce--EEEEccCCcccccccccccccccccccCCCceeCCCCCcCCCCCCCCCcCC----HHHHHHHHHHH
Confidence 99988887 343 333332222222111100 00 0013444432211111123455 45677788888
Q ss_pred HHHHHHHHHcCCe-EEEeeCCCCCcHh--------HHHHhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEEeCCh-----
Q 006566 221 SPLVEKCKKYGRA-VRIGTNHGSLSDR--------IMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNP----- 286 (640)
Q Consensus 221 ~~lV~~~Ke~g~a-IRIGvNhGSLs~r--------il~ryGdtp~gMVeSAle~~~i~e~~~F~diviSmKsSn~----- 286 (640)
..-.+.|++.|.- |=|=.-||.|-.. --.+||.+.+.=..=++|-++.+++.==.|+.|++|=|-.
T Consensus 554 ~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~~ 633 (765)
T PRK08255 554 VAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISAHDWVEG 633 (765)
T ss_pred HHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEccccccCC
Confidence 8888889988854 4444445655333 3446888777777777778887777422477888988732
Q ss_pred hhHHHHHHHHHHHHHHcCCCc
Q 006566 287 VVMVQAYRLLVAEMYVHGWDY 307 (640)
Q Consensus 287 ~~mV~AyRlL~~~m~~~g~dy 307 (640)
-...+....+++.+++.|.||
T Consensus 634 g~~~~~~~~~~~~l~~~g~d~ 654 (765)
T PRK08255 634 GNTPDDAVEIARAFKAAGADL 654 (765)
T ss_pred CCCHHHHHHHHHHHHhcCCcE
Confidence 123455567778888888875
No 121
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=82.93 E-value=10 Score=39.94 Aligned_cols=134 Identities=16% Similarity=0.227 Sum_probs=87.2
Q ss_pred CccccccccccccCC--CceeEEEceeecCCCCceEEEeccCCC--CCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHH
Q 006566 72 PRQKYCESIHKTVRR--KTRTVMVGNVAIGSEHPIRVQTMTTND--TKDVAGTVEEVMRIADQGADLVRITVQGKREADA 147 (640)
Q Consensus 72 ~~~~Yc~s~~~~~Rr--~Tr~V~VG~v~IGG~~PI~VQSMt~t~--T~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~A~~ 147 (640)
|+..=|.+--..-|. -.|+ ++|.+=|.+.=..... ..|...|++..+.|.+-|.+.+=+.++|...|+.
T Consensus 67 pNTaG~~ta~eAv~~a~lare-------~~~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~ 139 (248)
T cd04728 67 PNTAGCRTAEEAVRTARLARE-------ALGTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKR 139 (248)
T ss_pred CCCCCCCCHHHHHHHHHHHHH-------HhCCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHH
Confidence 444456665554432 1222 4467777777666555 5899999998888866666666666666666555
Q ss_pred HHHH-----------------------HHHhhcCCCCcceeeccCCC-HHHHHHHhhh-cCceeeCCCCCCchhhhcccc
Q 006566 148 CFEI-----------------------KNSLVQKNYNIPLVADIHFA-PSVALRVAEC-FDKIRVNPGNFADRRAQFEQL 202 (640)
Q Consensus 148 l~~I-----------------------~~~L~~~g~~iPLVADIHF~-~~~Al~Aa~~-v~KVRINPGN~~d~~k~F~~~ 202 (640)
|.+. -+.+++. .++|+|+|-+.. |.-|..|++. ++.|=+|-+=...++
T Consensus 140 l~~~G~~~vmPlg~pIGsg~Gi~~~~~I~~I~e~-~~vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt~a~d------ 212 (248)
T cd04728 140 LEDAGCAAVMPLGSPIGSGQGLLNPYNLRIIIER-ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAKAKD------ 212 (248)
T ss_pred HHHcCCCEeCCCCcCCCCCCCCCCHHHHHHHHHh-CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcCCCC------
Confidence 4332 1233433 689999998886 9999999999 999999977553222
Q ss_pred ccchHHHHHHHhhhHhhHHHHHHHHHH
Q 006566 203 EYTDDEYQKELQHIEEVFSPLVEKCKK 229 (640)
Q Consensus 203 eYtdeeY~~Ele~I~~~f~~lV~~~Ke 229 (640)
-..+-++|..-|+.-+.
T Consensus 213 ----------P~~ma~af~~Av~aGr~ 229 (248)
T cd04728 213 ----------PVAMARAFKLAVEAGRL 229 (248)
T ss_pred ----------HHHHHHHHHHHHHHHHH
Confidence 12445567666666554
No 122
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=82.78 E-value=72 Score=34.13 Aligned_cols=209 Identities=17% Similarity=0.151 Sum_probs=122.3
Q ss_pred eEEEceeecCCCCceEEEeccCCCCCC---HHHHHHHHHHHHHcCCCEE-----------E-----EecCCHHHHHHHHH
Q 006566 90 TVMVGNVAIGSEHPIRVQTMTTNDTKD---VAGTVEEVMRIADQGADLV-----------R-----ITVQGKREADACFE 150 (640)
Q Consensus 90 ~V~VG~v~IGG~~PI~VQSMt~t~T~D---v~atv~Qi~rl~~aGceiV-----------R-----vtvp~~~~A~~l~~ 150 (640)
.++||++.| -|-|..-.|++..+.| ++..++=-.+.++-|+-+| | +..-+.+..+.+++
T Consensus 4 P~~ig~~~l--~NRi~~~pm~~~~~~~g~~~~~~~~~y~~rA~gg~glii~~~~~v~~~~~~~~~~~~~~~d~~~~~~~~ 81 (336)
T cd02932 4 PLTLRGVTL--KNRIVVSPMCQYSAEDGVATDWHLVHYGSRALGGAGLVIVEATAVSPEGRITPGDLGLWNDEQIEALKR 81 (336)
T ss_pred CeeECCEEE--eccCEEcccccCcCCCCCCCHHHHHHHHHHHcCCCcEEEEcceEECCCcCCCCCceeecCHHHHHHHHH
Confidence 577888777 7888888998655545 6777888888888888887 1 11234677899999
Q ss_pred HHHHhhcCCCCcceeeccCCCHHHHHHHhhh-----------cCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhh
Q 006566 151 IKNSLVQKNYNIPLVADIHFAPSVALRVAEC-----------FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEV 219 (640)
Q Consensus 151 I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~-----------v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~ 219 (640)
+.+..++.|.. +++=++-.-+.+...... ....-+-|..+........-.+.| .+|++.|.+.
T Consensus 82 l~~~vh~~G~~--~~~QL~H~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~~~~~~~~~~p~~mt----~~eI~~ii~~ 155 (336)
T cd02932 82 IVDFIHSQGAK--IGIQLAHAGRKASTAPPWEGGGPLLPPGGGGWQVVAPSAIPFDEGWPTPRELT----REEIAEVVDA 155 (336)
T ss_pred HHHHHHhcCCc--EEEEccCCCcCCCCCCCccccccccccccCCCceeCCCCCcCCCCCCCCCcCC----HHHHHHHHHH
Confidence 99999988875 455533222211110000 000012222211110000112344 5677888888
Q ss_pred HHHHHHHHHHcCCe-EEEeeCCCCCcHhHH--------HHhCCChHHHHHHHHHHHHHHHH-CCCCcEEEEEEeCC----
Q 006566 220 FSPLVEKCKKYGRA-VRIGTNHGSLSDRIM--------SYYGDSPRGMVESAFEFARICRK-LDFHNFLFSMKASN---- 285 (640)
Q Consensus 220 f~~lV~~~Ke~g~a-IRIGvNhGSLs~ril--------~ryGdtp~gMVeSAle~~~i~e~-~~F~diviSmKsSn---- 285 (640)
|..-.+.|++.|.- |=|=.-||-|-..++ .+||.+.+.=.+-.+|-++-.++ .| .|+.|++|-|-
T Consensus 156 ~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG-~d~~v~vri~~~~~~ 234 (336)
T cd02932 156 FVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWP-EDKPLFVRISATDWV 234 (336)
T ss_pred HHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcC-CCceEEEEEcccccC
Confidence 98888999888754 444444565433333 35776554444555555554444 32 46789999762
Q ss_pred -hhhHHHHHHHHHHHHHHcCCCc
Q 006566 286 -PVVMVQAYRLLVAEMYVHGWDY 307 (640)
Q Consensus 286 -~~~mV~AyRlL~~~m~~~g~dy 307 (640)
.-...+....+++.+++.|++|
T Consensus 235 ~~g~~~~e~~~ia~~Le~~gvd~ 257 (336)
T cd02932 235 EGGWDLEDSVELAKALKELGVDL 257 (336)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCE
Confidence 1123555667777887778763
No 123
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=82.60 E-value=30 Score=38.61 Aligned_cols=144 Identities=12% Similarity=0.190 Sum_probs=89.5
Q ss_pred CHHHHHHHHHHHHHc---CCCEEEEe----cCCHHHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhhcCceeeC
Q 006566 116 DVAGTVEEVMRIADQ---GADLVRIT----VQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVN 188 (640)
Q Consensus 116 Dv~atv~Qi~rl~~a---GceiVRvt----vp~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~v~KVRIN 188 (640)
.+++-+++|..+.+. +..+-+|. +|+.-..+.+.+|-+.+++. .|+..|+. + .+..|
T Consensus 82 y~~~L~~Ei~~~~~~~~~~~~v~~I~fgGGtP~~l~~~~l~~ll~~i~~~---~~~~~~~e-----------i--tie~n 145 (455)
T TIGR00538 82 YLDALEKEIALVAPLFDGNRHVSQLHWGGGTPTYLSPEQISRLMKLIREN---FPFNADAE-----------I--SIEID 145 (455)
T ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEECCCCcCCCCHHHHHHHHHHHHHh---CCCCCCCe-----------E--EEEec
Confidence 578888888877542 12444554 45533445555555544332 23322221 1 25679
Q ss_pred CCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCC-ChHHHHHHHHHHHH
Q 006566 189 PGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFAR 267 (640)
Q Consensus 189 PGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGd-tp~gMVeSAle~~~ 267 (640)
|..+-+ ++++..|+.|+ .||-+.-=|+++++++..|- .. .+.+.+.++
T Consensus 146 p~~l~~---------------------------e~l~~lk~~G~-~risiGvqS~~~~~l~~l~r~~~---~~~~~~ai~ 194 (455)
T TIGR00538 146 PRYITK---------------------------DVIDALRDEGF-NRLSFGVQDFNKEVQQAVNRIQP---EEMIFELMN 194 (455)
T ss_pred cCcCCH---------------------------HHHHHHHHcCC-CEEEEcCCCCCHHHHHHhCCCCC---HHHHHHHHH
Confidence 988743 24677777774 36766667889999999973 22 356677888
Q ss_pred HHHHCCCCcEEEEEEeCChhhHHHHHHHHHHHHHHcCCC
Q 006566 268 ICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWD 306 (640)
Q Consensus 268 i~e~~~F~diviSmKsSn~~~mV~AyRlL~~~m~~~g~d 306 (640)
.|++.||.++-+.+=.-=|..+.+..+...+.+.+.+.+
T Consensus 195 ~l~~~G~~~v~~dli~GlPgqt~e~~~~tl~~~~~l~~~ 233 (455)
T TIGR00538 195 HAREAGFTSINIDLIYGLPKQTKESFAKTLEKVAELNPD 233 (455)
T ss_pred HHHhcCCCcEEEeEEeeCCCCCHHHHHHHHHHHHhcCCC
Confidence 999999986666655444555666666666666666654
No 124
>PRK00208 thiG thiazole synthase; Reviewed
Probab=82.55 E-value=11 Score=39.77 Aligned_cols=139 Identities=18% Similarity=0.223 Sum_probs=88.1
Q ss_pred CCCCccCccccccccccccCC--CceeEEEceeecCCCCceEEEecc--CCCCCCHHHHHHHHHHHHHcCCCEEEEecCC
Q 006566 66 GSPLLVPRQKYCESIHKTVRR--KTRTVMVGNVAIGSEHPIRVQTMT--TNDTKDVAGTVEEVMRIADQGADLVRITVQG 141 (640)
Q Consensus 66 ~~~~~~~~~~Yc~s~~~~~Rr--~Tr~V~VG~v~IGG~~PI~VQSMt--~t~T~Dv~atv~Qi~rl~~aGceiVRvtvp~ 141 (640)
++.++ |+..=|.+--...|. --|+ +++.+=|.+.=-. .+...|+..||+..+.|.+-|.+.+=+.++|
T Consensus 62 ~~~~l-pNTaG~~ta~eAv~~a~lare-------~~~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d 133 (250)
T PRK00208 62 GVTLL-PNTAGCRTAEEAVRTARLARE-------ALGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDD 133 (250)
T ss_pred CCEEC-CCCCCCCCHHHHHHHHHHHHH-------HhCCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 44444 444466665544332 1122 2355556655554 4446899999998888866666666566666
Q ss_pred HHHHHHHHHH-----------------------HHHhhcCCCCcceeeccCCC-HHHHHHHhhh-cCceeeCCCCCCchh
Q 006566 142 KREADACFEI-----------------------KNSLVQKNYNIPLVADIHFA-PSVALRVAEC-FDKIRVNPGNFADRR 196 (640)
Q Consensus 142 ~~~A~~l~~I-----------------------~~~L~~~g~~iPLVADIHF~-~~~Al~Aa~~-v~KVRINPGN~~d~~ 196 (640)
...|++|.+. .+.+++. .++|+|+|-+.. |.-|..|++. ++.|=+|-+=...++
T Consensus 134 ~~~ak~l~~~G~~~vmPlg~pIGsg~gi~~~~~i~~i~e~-~~vpVIveaGI~tpeda~~AmelGAdgVlV~SAItka~d 212 (250)
T PRK00208 134 PVLAKRLEEAGCAAVMPLGAPIGSGLGLLNPYNLRIIIEQ-ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAVAGD 212 (250)
T ss_pred HHHHHHHHHcCCCEeCCCCcCCCCCCCCCCHHHHHHHHHh-cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhCCCC
Confidence 6555554332 2233333 689999999887 9999999999 999999987654222
Q ss_pred hhccccccchHHHHHHHhhhHhhHHHHHHHHHH
Q 006566 197 AQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKK 229 (640)
Q Consensus 197 k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke 229 (640)
-..+-++|..-|+..+.
T Consensus 213 ----------------P~~ma~af~~Av~aGr~ 229 (250)
T PRK00208 213 ----------------PVAMARAFKLAVEAGRL 229 (250)
T ss_pred ----------------HHHHHHHHHHHHHHHHH
Confidence 13456677777777665
No 125
>TIGR03586 PseI pseudaminic acid synthase.
Probab=82.19 E-value=62 Score=35.31 Aligned_cols=118 Identities=14% Similarity=0.244 Sum_probs=83.3
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCCHHHH-----------------------------------HHHHHHHHHhhcC
Q 006566 114 TKDVAGTVEEVMRIADQGADLVRITVQGKREA-----------------------------------DACFEIKNSLVQK 158 (640)
Q Consensus 114 T~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~A-----------------------------------~~l~~I~~~L~~~ 158 (640)
--|.+-+.+=|....++|||.|++-+-..++- +.|.+.++
T Consensus 13 ~G~~~~A~~lI~~A~~aGAdavKFQ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~----- 87 (327)
T TIGR03586 13 NGSLERALAMIEAAKAAGADAIKLQTYTPDTITLDSDRPEFIIKGGLWDGRTLYDLYQEAHTPWEWHKELFERAK----- 87 (327)
T ss_pred CChHHHHHHHHHHHHHhCCCEEEeeeccHHHhhccccccccccccCCcCCccHHHHHHHhhCCHHHHHHHHHHHH-----
Confidence 45777777888888999999998875433321 12333333
Q ss_pred CCCcceeeccCCCHHHHHHHhhh-cCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEe
Q 006566 159 NYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIG 237 (640)
Q Consensus 159 g~~iPLVADIHF~~~~Al~Aa~~-v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIG 237 (640)
.+.+|.++.. |+..-+....+. ++-+-|--||+.+ .||++.+-+.|.||=+.
T Consensus 88 ~~Gi~~~stp-fd~~svd~l~~~~v~~~KI~S~~~~n--------------------------~~LL~~va~~gkPvils 140 (327)
T TIGR03586 88 ELGLTIFSSP-FDETAVDFLESLDVPAYKIASFEITD--------------------------LPLIRYVAKTGKPIIMS 140 (327)
T ss_pred HhCCcEEEcc-CCHHHHHHHHHcCCCEEEECCccccC--------------------------HHHHHHHHhcCCcEEEE
Confidence 3778999987 566666666677 9999999999865 46888888999999766
Q ss_pred eCCCCCcHhHHHHhCCChHHHHHHHHHHHHHHHHCCCCcEEE
Q 006566 238 TNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLF 279 (640)
Q Consensus 238 vNhGSLs~ril~ryGdtp~gMVeSAle~~~i~e~~~F~divi 279 (640)
+ |-.-..-++.|.++++ +.|-++|++
T Consensus 141 t-------------G~~t~~Ei~~Av~~i~---~~g~~~i~L 166 (327)
T TIGR03586 141 T-------------GIATLEEIQEAVEACR---EAGCKDLVL 166 (327)
T ss_pred C-------------CCCCHHHHHHHHHHHH---HCCCCcEEE
Confidence 6 3222356777777764 677777776
No 126
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=82.09 E-value=68 Score=36.70 Aligned_cols=165 Identities=10% Similarity=0.081 Sum_probs=96.2
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecC--CHHHHHHHHHHHHHhhcCCCCcceeec-cCCCHHHHHHHhhhcCceeeCCC
Q 006566 114 TKDVAGTVEEVMRIADQGADLVRITVQ--GKREADACFEIKNSLVQKNYNIPLVAD-IHFAPSVALRVAECFDKIRVNPG 190 (640)
Q Consensus 114 T~Dv~atv~Qi~rl~~aGceiVRvtvp--~~~~A~~l~~I~~~L~~~g~~iPLVAD-IHF~~~~Al~Aa~~v~KVRINPG 190 (640)
...++.-++=++.|.++|.+.|=+..| +..|.+.++.|.+.+. +..+=..+. ..-+-..|.+|..-++.-||+=-
T Consensus 19 ~~s~e~K~~ia~~L~~~GV~~IEvG~p~~s~~d~e~v~~i~~~~~--~~~i~al~r~~~~did~a~~al~~~~~~~v~i~ 96 (494)
T TIGR00973 19 SLTVEEKLQIALALERLGVDIIEAGFPVSSPGDFEAVQRIARTVK--NPRVCGLARCVEKDIDAAAEALKPAEKFRIHTF 96 (494)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHhCC--CCEEEEEcCCCHHhHHHHHHhccccCCCEEEEE
Confidence 467788888899999999999999877 4678888988876532 111111111 11112344444332333343322
Q ss_pred CCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCCChHHHHHHHHHHHHHHH
Q 006566 191 NFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICR 270 (640)
Q Consensus 191 N~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGdtp~gMVeSAle~~~i~e 270 (640)
.-.+....+ .-+..-.+.+.+...+.|+.||++|..++++.-.+|- ++ .+-+++.++.+.
T Consensus 97 ~~~S~~h~~-------~~l~~s~~e~l~~~~~~v~~a~~~g~~v~f~~Ed~~r----------~d---~~~l~~~~~~~~ 156 (494)
T TIGR00973 97 IATSPIHLE-------HKLKMTRDEVLERAVGMVKYAKNFTDDVEFSCEDAGR----------TE---IPFLARIVEAAI 156 (494)
T ss_pred EccCHHHHH-------HHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCC----------CC---HHHHHHHHHHHH
Confidence 112111000 0122234556667888999999999998888654433 22 255666777777
Q ss_pred HCCCCcEEEEEEeCChhhHHHHHHHHHHHHHH
Q 006566 271 KLDFHNFLFSMKASNPVVMVQAYRLLVAEMYV 302 (640)
Q Consensus 271 ~~~F~diviSmKsSn~~~mV~AyRlL~~~m~~ 302 (640)
+.|=+ .|++..++=..+=..+..+++.+.+
T Consensus 157 ~~Ga~--~i~l~DTvG~~~P~~~~~~i~~l~~ 186 (494)
T TIGR00973 157 NAGAT--TINIPDTVGYALPAEYGNLIKGLRE 186 (494)
T ss_pred HcCCC--EEEeCCCCCCCCHHHHHHHHHHHHH
Confidence 77754 5777776655455555555555543
No 127
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=81.96 E-value=12 Score=36.74 Aligned_cols=96 Identities=20% Similarity=0.235 Sum_probs=62.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEe--cCCHHHHHHHHHHHHHhhcCCCCcceeeccCCC-HH--HHHHHhhh-cCcee
Q 006566 113 DTKDVAGTVEEVMRIADQGADLVRIT--VQGKREADACFEIKNSLVQKNYNIPLVADIHFA-PS--VALRVAEC-FDKIR 186 (640)
Q Consensus 113 ~T~Dv~atv~Qi~rl~~aGceiVRvt--vp~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~-~~--~Al~Aa~~-v~KVR 186 (640)
|..|.+.+++=+.+| +.|-+++=++ -......+.++.|++. .-+.++++|+|+- |- .+..++++ ++-|=
T Consensus 7 D~~~~~~a~~~~~~l-~~~v~~iev~~~l~~~~g~~~i~~l~~~----~~~~~i~~d~k~~d~~~~~~~~~~~~Gad~i~ 81 (206)
T TIGR03128 7 DLLDIEEALELAEKV-ADYVDIIEIGTPLIKNEGIEAVKEMKEA----FPDRKVLADLKTMDAGEYEAEQAFAAGADIVT 81 (206)
T ss_pred cCCCHHHHHHHHHHc-ccCeeEEEeCCHHHHHhCHHHHHHHHHH----CCCCEEEEEEeeccchHHHHHHHHHcCCCEEE
Confidence 677888888888888 7888887775 2223335666666663 1257899999864 32 36666666 66664
Q ss_pred eCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEe
Q 006566 187 VNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIG 237 (640)
Q Consensus 187 INPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIG 237 (640)
+..-. + . .....+++.||++|+++=++
T Consensus 82 vh~~~--~-~---------------------~~~~~~i~~~~~~g~~~~~~ 108 (206)
T TIGR03128 82 VLGVA--D-D---------------------ATIKGAVKAAKKHGKEVQVD 108 (206)
T ss_pred EeccC--C-H---------------------HHHHHHHHHHHHcCCEEEEE
Confidence 43221 1 1 12567899999999777444
No 128
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=81.91 E-value=7.3 Score=41.92 Aligned_cols=115 Identities=22% Similarity=0.292 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHcCCCEEEEe------------------------cCCHHHH-------------HHHHHHHHHhhcCCCC
Q 006566 119 GTVEEVMRIADQGADLVRIT------------------------VQGKREA-------------DACFEIKNSLVQKNYN 161 (640)
Q Consensus 119 atv~Qi~rl~~aGceiVRvt------------------------vp~~~~A-------------~~l~~I~~~L~~~g~~ 161 (640)
.++++..|-+++|+++||-| ..+..+. +-|+++++. .+
T Consensus 129 ~~l~EAlrai~~GadmI~Ttge~gtg~v~~av~h~r~~~~~i~~L~gyt~~~~~~~a~~~~~~~elL~ei~~~-----~~ 203 (293)
T PRK04180 129 RNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHMRQINGEIRRLTSMSEDELYTAAKELQAPYELVKEVAEL-----GR 203 (293)
T ss_pred CCHHHHHHHHHCCCCeeeccCCCCCccHHHHHHHHHHHHHHHHHHhCCCHHHHHhhccccCCCHHHHHHHHHh-----CC
Confidence 46788888999999999999 3333222 334555553 56
Q ss_pred ccee--eccCC-CHHHHHHHhhh-cCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEe
Q 006566 162 IPLV--ADIHF-APSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIG 237 (640)
Q Consensus 162 iPLV--ADIHF-~~~~Al~Aa~~-v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIG 237 (640)
+|+| |--+. +|.-|-.+++. ++.|=+--+=+...+ ..-.-.+|.+.+.+..+ -.-|.+.++.+|-+| .|
T Consensus 204 iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~d-----P~~~akafv~ai~~~~~-~~~~~~~s~~~~~~m-~g 276 (293)
T PRK04180 204 LPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSGD-----PEKRARAIVEATTHYDD-PEVLAEVSKGLGEAM-VG 276 (293)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCCC-----HHHHHHHHHHHHHHcCC-HHHHHHHHccccccc-CC
Confidence 9998 88888 89988888888 998877655442211 01112345555555555 667889999999999 49
Q ss_pred eCCCCCcH
Q 006566 238 TNHGSLSD 245 (640)
Q Consensus 238 vNhGSLs~ 245 (640)
.|-.+|++
T Consensus 277 ~~~~~~~~ 284 (293)
T PRK04180 277 IDIDELPP 284 (293)
T ss_pred CccccCCH
Confidence 99988853
No 129
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=81.76 E-value=38 Score=37.64 Aligned_cols=146 Identities=10% Similarity=0.070 Sum_probs=90.7
Q ss_pred CHHHHHHHHHHHHHc--CCCEEEEe----cCCHHHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhhcCceeeCC
Q 006566 116 DVAGTVEEVMRIADQ--GADLVRIT----VQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNP 189 (640)
Q Consensus 116 Dv~atv~Qi~rl~~a--GceiVRvt----vp~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~v~KVRINP 189 (640)
-+++.+++|..+.+. +..+.+|. +|+.-..+.|..|-+.+++. .++.. .+ ++. -+-.||
T Consensus 72 y~~~L~~Ei~~~~~~~~~~~i~~i~~GGGTPs~l~~~~l~~Ll~~i~~~-~~~~~-~~-----------~ei--tiE~~P 136 (430)
T PRK08208 72 YLDALIRQAEQVAEALAPARFASFAVGGGTPTLLNAAELEKLFDSVERV-LGVDL-GN-----------IPK--SVETSP 136 (430)
T ss_pred HHHHHHHHHHHHHHHcCCCceeEEEEcCCccccCCHHHHHHHHHHHHHh-CCCCC-CC-----------ceE--EEEeCc
Confidence 467888888877654 34566665 67766667777777665431 21100 00 111 255789
Q ss_pred CCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCCChHHHHHHHHHHHHHH
Q 006566 190 GNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARIC 269 (640)
Q Consensus 190 GN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGdtp~gMVeSAle~~~i~ 269 (640)
.++-+ +.++..|+.|+- ||-+--=|++++.+...|-.. =.+.+.+-++.|
T Consensus 137 ~~lt~---------------------------e~l~~l~~~G~~-rvslGvQS~~~~~L~~l~R~~--~~~~~~~ai~~l 186 (430)
T PRK08208 137 ATTTA---------------------------EKLALLAARGVN-RLSIGVQSFHDSELHALHRPQ--KRADVHQALEWI 186 (430)
T ss_pred CcCCH---------------------------HHHHHHHHcCCC-EEEEecccCCHHHHHHhCCCC--CHHHHHHHHHHH
Confidence 88732 246777777753 555555778899999988321 135667778889
Q ss_pred HHCCCCcEEEEEEeCChhhHHHHHHHHHHHHHHcCCC
Q 006566 270 RKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWD 306 (640)
Q Consensus 270 e~~~F~diviSmKsSn~~~mV~AyRlL~~~m~~~g~d 306 (640)
++.||.++.+.+=--=|..+.+.++...+.+.+.+.+
T Consensus 187 ~~~g~~~i~~dlI~GlP~qt~e~~~~~l~~~~~l~~~ 223 (430)
T PRK08208 187 RAAGFPILNIDLIYGIPGQTHASWMESLDQALVYRPE 223 (430)
T ss_pred HHcCCCeEEEEeecCCCCCCHHHHHHHHHHHHhCCCC
Confidence 9999987666654443455666666666665555543
No 130
>PLN02321 2-isopropylmalate synthase
Probab=81.66 E-value=1.2e+02 Score=36.03 Aligned_cols=165 Identities=12% Similarity=0.172 Sum_probs=96.4
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecC--CHHHHHHHHHHHHHhhcCCCC----cce-eeccCCCH---HHHHHHhhhcC
Q 006566 114 TKDVAGTVEEVMRIADQGADLVRITVQ--GKREADACFEIKNSLVQKNYN----IPL-VADIHFAP---SVALRVAECFD 183 (640)
Q Consensus 114 T~Dv~atv~Qi~rl~~aGceiVRvtvp--~~~~A~~l~~I~~~L~~~g~~----iPL-VADIHF~~---~~Al~Aa~~v~ 183 (640)
+..++.-++=++.|.++|-+.|=+..| +.+|.+.++.|.+.+.. +.. +|. ++=..-+. ..|++|...+.
T Consensus 104 ~~s~eeKl~Ia~~L~~lGVd~IEvGfP~~Sp~D~e~vr~i~~~~~~-~v~~~~~v~~i~a~~ra~~~dId~A~~al~~a~ 182 (632)
T PLN02321 104 TLTSKEKLDIARQLAKLGVDIIEAGFPIASPDDLEAVKTIAKEVGN-EVDEDGYVPVICGLSRCNKKDIDAAWEAVKHAK 182 (632)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCcCCCccHHHHHHHHHHhccc-CCCccccceeeeeehhccHHhHHHHHHHhcCCC
Confidence 477889999999999999999999886 45899999999876432 111 242 11111122 34555444344
Q ss_pred ceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCC-eEEEeeCCCCCcHhHHHHhCCChHHHHHHH
Q 006566 184 KIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGR-AVRIGTNHGSLSDRIMSYYGDSPRGMVESA 262 (640)
Q Consensus 184 KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~-aIRIGvNhGSLs~ril~ryGdtp~gMVeSA 262 (640)
+.||+=-.=.+.. |. ...+..-.+.+-+.+.+.|+.||++|. .+..+.--+ +.++ .+-+
T Consensus 183 ~~~I~i~~stSd~--h~-----~~~l~~t~ee~l~~~~~~V~~Ak~~G~~~v~fs~EDa----------~rtd---~d~l 242 (632)
T PLN02321 183 RPRIHTFIATSEI--HM-----EHKLRKTPDEVVEIARDMVKYARSLGCEDVEFSPEDA----------GRSD---PEFL 242 (632)
T ss_pred CCEEEEEEcCCHH--HH-----HHHhCCCHHHHHHHHHHHHHHHHHcCCceEEEecccC----------CCCC---HHHH
Confidence 4454322111100 00 111333456677778899999999987 466664322 2232 3455
Q ss_pred HHHHHHHHHCCCCcEEEEEEeCChhhHHHHHHHHHHHHH
Q 006566 263 FEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMY 301 (640)
Q Consensus 263 le~~~i~e~~~F~diviSmKsSn~~~mV~AyRlL~~~m~ 301 (640)
++.++.+.+.|=+ .|++..+.=..+=..+..+++.+.
T Consensus 243 ~~~~~~a~~aGa~--~I~L~DTvG~~~P~~v~~li~~l~ 279 (632)
T PLN02321 243 YRILGEVIKAGAT--TLNIPDTVGYTLPSEFGQLIADIK 279 (632)
T ss_pred HHHHHHHHHcCCC--EEEecccccCCCHHHHHHHHHHHH
Confidence 6677777777754 456666554444444555555543
No 131
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=81.63 E-value=46 Score=36.96 Aligned_cols=141 Identities=17% Similarity=0.282 Sum_probs=81.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecCCHHH-------HHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhhcCce
Q 006566 113 DTKDVAGTVEEVMRIADQGADLVRITVQGKRE-------ADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKI 185 (640)
Q Consensus 113 ~T~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~-------A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~v~KV 185 (640)
..++++..++++++|.+.|+.-|.++-++.-. -.+|.++-+.|.+ +| ....|
T Consensus 151 rsrs~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~----~~-----------------~~~~i 209 (418)
T PRK14336 151 KSRSIAEIGCEVAELVRRGSREVVLLGQNVDSYGHDLPEKPCLADLLSALHD----IP-----------------GLLRI 209 (418)
T ss_pred ccCCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCcccHHHHHHHHHh----cC-----------------CccEE
Confidence 35778999999999999999888888666421 0122222222110 00 01234
Q ss_pred ee---CCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcC---CeEEEeeCCCCCcHhHHHHhCC-ChHHH
Q 006566 186 RV---NPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYG---RAVRIGTNHGSLSDRIMSYYGD-SPRGM 258 (640)
Q Consensus 186 RI---NPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g---~aIRIGvNhGSLs~ril~ryGd-tp~gM 258 (640)
|+ +|.++.+ ++++.-++.+ ..+=||+-|| |+++|.+++- ..
T Consensus 210 r~~~~~p~~i~~---------------------------ell~~l~~~~~~~~~l~lglQSg--sd~vLk~M~R~~~--- 257 (418)
T PRK14336 210 RFLTSHPKDISQ---------------------------KLIDAMAHLPKVCRSLSLPVQAG--DDTILAAMRRGYT--- 257 (418)
T ss_pred EEeccChhhcCH---------------------------HHHHHHHhcCccCCceecCCCcC--CHHHHHHhCCCCC---
Confidence 53 4544421 1233333322 3566788777 7999999873 22
Q ss_pred HHHHHHHHHHHHHC--CCC---cEEEEEEeCChhhHHHHHHHHHHHHHHcCCCcceEE
Q 006566 259 VESAFEFARICRKL--DFH---NFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHL 311 (640)
Q Consensus 259 VeSAle~~~i~e~~--~F~---diviSmKsSn~~~mV~AyRlL~~~m~~~g~dyPLHL 311 (640)
.+..++.++.+++. |+. |+++-. |-.+.+.++...+.+.+.+.++ +|+
T Consensus 258 ~~~~~~~i~~lr~~~pgi~i~~d~IvGf----PGET~edf~~tl~fi~~~~~~~-~~v 310 (418)
T PRK14336 258 NQQYRELVERLKTAMPDISLQTDLIVGF----PSETEEQFNQSYKLMADIGYDA-IHV 310 (418)
T ss_pred HHHHHHHHHHHHhhCCCCEEEEEEEEEC----CCCCHHHHHHHHHHHHhcCCCE-EEe
Confidence 45667777788877 552 444443 4456667777666666666654 344
No 132
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=81.58 E-value=24 Score=36.22 Aligned_cols=106 Identities=20% Similarity=0.270 Sum_probs=66.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCC------HHHHH--------------HHHHHHHHhhcCCCCcceeeccCCCH--
Q 006566 115 KDVAGTVEEVMRIADQGADLVRITVQG------KREAD--------------ACFEIKNSLVQKNYNIPLVADIHFAP-- 172 (640)
Q Consensus 115 ~Dv~atv~Qi~rl~~aGceiVRvtvp~------~~~A~--------------~l~~I~~~L~~~g~~iPLVADIHF~~-- 172 (640)
-|.+.+.+.+++|.++|||++=+-+|- -...+ ..-++.+++++. +++|++-=.-+||
T Consensus 11 P~~~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~-~~~pv~lm~y~n~~~ 89 (242)
T cd04724 11 PDLETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKK-NTIPIVLMGYYNPIL 89 (242)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhc-CCCCEEEEEecCHHH
Confidence 477899999999999999999999443 22222 344555556654 3788543112253
Q ss_pred -----HHHHHHhhh-cCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHh
Q 006566 173 -----SVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDR 246 (640)
Q Consensus 173 -----~~Al~Aa~~-v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~r 246 (640)
+....++++ ++-|=|. | .-| |.+.++++.||++|+..=.-+|-.+-.+|
T Consensus 90 ~~G~~~fi~~~~~aG~~giiip-----D------------l~~--------ee~~~~~~~~~~~g~~~i~~i~P~T~~~~ 144 (242)
T cd04724 90 QYGLERFLRDAKEAGVDGLIIP-----D------------LPP--------EEAEEFREAAKEYGLDLIFLVAPTTPDER 144 (242)
T ss_pred HhCHHHHHHHHHHCCCcEEEEC-----C------------CCH--------HHHHHHHHHHHHcCCcEEEEeCCCCCHHH
Confidence 445556666 6655553 1 001 13778999999999877555665544333
No 133
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=81.16 E-value=66 Score=32.61 Aligned_cols=144 Identities=19% Similarity=0.197 Sum_probs=77.5
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCHH---HHHHHHHHHHHhhcCCCCcceeeccCCCH---------HHHHHHhhhc
Q 006566 115 KDVAGTVEEVMRIADQGADLVRITVQGKR---EADACFEIKNSLVQKNYNIPLVADIHFAP---------SVALRVAECF 182 (640)
Q Consensus 115 ~Dv~atv~Qi~rl~~aGceiVRvtvp~~~---~A~~l~~I~~~L~~~g~~iPLVADIHF~~---------~~Al~Aa~~v 182 (640)
.+.+....|+.++ ..|||+|=+-+--.+ ..+.+..+-++++..-.++|++.-+=-.. ..=....+.+
T Consensus 9 ~~~~~~~~~~~~~-~~~aD~vElRlD~l~~~~~~~~~~~~~~~~~~~~~~~piI~T~R~~~eGG~~~~~~~~~~~ll~~~ 87 (228)
T TIGR01093 9 PDLEEALATAEKI-CKGADIVELRVDLLKDPSSNNDVDALIEQLSQLRPDKPLIFTIRTISEGGKFPGNEEEYLEELKRA 87 (228)
T ss_pred CCHHHHHHHHHHh-ccCCCEEEEEechhcccCcHHHHHHHHHHHHHhcCCCcEEEEECChhhCCCCCCCHHHHHHHHHHH
Confidence 4577788899998 899999766544332 23333344444333224689998542111 0000000000
Q ss_pred CceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCCChHHHHHHH
Q 006566 183 DKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESA 262 (640)
Q Consensus 183 ~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGdtp~gMVeSA 262 (640)
- .|-.| .|.| +|+. .-++.+.++++.+++.++.+ |+-.|=- ..||.- +..
T Consensus 88 ~-~~~~~-d~vD-------iEl~---------~~~~~~~~l~~~~~~~~~kv-I~S~H~f---------~~tp~~--~~l 137 (228)
T TIGR01093 88 A-DSPGP-DFVD-------IELF---------LPDDAVKELINIAKKGGTKI-IMSYHDF---------QKTPSW--EEI 137 (228)
T ss_pred H-HhCCC-CEEE-------EEcc---------CCHHHHHHHHHHHHHCCCEE-EEeccCC---------CCCCCH--HHH
Confidence 0 01111 1222 2221 11234677888888888765 6666521 235521 223
Q ss_pred HHHHHHHHHCCCCcEEEEEEeCChhhH
Q 006566 263 FEFARICRKLDFHNFLFSMKASNPVVM 289 (640)
Q Consensus 263 le~~~i~e~~~F~diviSmKsSn~~~m 289 (640)
.+.++-+++.|.+=++|...+.+....
T Consensus 138 ~~~~~~~~~~gaDivKia~~a~~~~D~ 164 (228)
T TIGR01093 138 VERLEKALSYGADIVKIAVMANSKEDV 164 (228)
T ss_pred HHHHHHHHHhCCCEEEEEeccCCHHHH
Confidence 457778889998888899888886543
No 134
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=81.14 E-value=41 Score=37.60 Aligned_cols=144 Identities=13% Similarity=0.199 Sum_probs=88.5
Q ss_pred CHHHHHHHHHHHHHc---CCCEEEEe----cCCHHHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhhcCceeeC
Q 006566 116 DVAGTVEEVMRIADQ---GADLVRIT----VQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVN 188 (640)
Q Consensus 116 Dv~atv~Qi~rl~~a---GceiVRvt----vp~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~v~KVRIN 188 (640)
-+++.+++|....+. +..+-.|. +|+.-..+.+.+|-+.|++. .|+..|. ++ .+..|
T Consensus 83 y~~~L~~Ei~~~~~~~~~~~~v~~i~fgGGTPs~l~~~~l~~ll~~i~~~---~~~~~~~-----------e~--tie~~ 146 (453)
T PRK13347 83 YVAALIREIRLVAASLPQRRRVSQLHWGGGTPTILNPDQFERLMAALRDA---FDFAPEA-----------EI--AVEID 146 (453)
T ss_pred HHHHHHHHHHHHHHhcCCCCeEEEEEEcCcccccCCHHHHHHHHHHHHHh---CCCCCCc-----------eE--EEEec
Confidence 467888888876554 23555555 56654555566666555432 1221111 22 25689
Q ss_pred CCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCC-ChHHHHHHHHHHHH
Q 006566 189 PGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFAR 267 (640)
Q Consensus 189 PGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGd-tp~gMVeSAle~~~ 267 (640)
|+.+-+ +.++..|+.|+- ||-+.-=|++++++...|- .. .+.+++-++
T Consensus 147 p~~lt~---------------------------e~l~~L~~~G~~-rvsiGvQS~~~~vl~~l~R~~~---~~~~~~ai~ 195 (453)
T PRK13347 147 PRTVTA---------------------------EMLQALAALGFN-RASFGVQDFDPQVQKAINRIQP---EEMVARAVE 195 (453)
T ss_pred cccCCH---------------------------HHHHHHHHcCCC-EEEECCCCCCHHHHHHhCCCCC---HHHHHHHHH
Confidence 998832 256788888864 6666668899999999984 22 345566677
Q ss_pred HHHHCCCCcEEEEEEeCChhhHHHHHHHHHHHHHHcCCC
Q 006566 268 ICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWD 306 (640)
Q Consensus 268 i~e~~~F~diviSmKsSn~~~mV~AyRlL~~~m~~~g~d 306 (640)
.+++.||.++.+.+=--=|..+.+..+...+.+.+.+.+
T Consensus 196 ~lr~~G~~~v~~dli~GlPgqt~e~~~~tl~~~~~l~p~ 234 (453)
T PRK13347 196 LLRAAGFESINFDLIYGLPHQTVESFRETLDKVIALSPD 234 (453)
T ss_pred HHHhcCCCcEEEeEEEeCCCCCHHHHHHHHHHHHhcCCC
Confidence 888999986665553333445566666666665555543
No 135
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=81.10 E-value=3.4 Score=47.11 Aligned_cols=63 Identities=13% Similarity=0.159 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHcCCCEEEEe--------c--------CCHHHHHHHHHHHHHhhcCCCCcceeeccCCC-HHHHHHHhhh
Q 006566 119 GTVEEVMRIADQGADLVRIT--------V--------QGKREADACFEIKNSLVQKNYNIPLVADIHFA-PSVALRVAEC 181 (640)
Q Consensus 119 atv~Qi~rl~~aGceiVRvt--------v--------p~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~-~~~Al~Aa~~ 181 (640)
+|.++.++++++|||.|++. + |-...-..+.++.+. .++|+|||-.+. +.-+.+|+..
T Consensus 298 ~t~e~a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~-----~~vpVIadGGI~~~~di~kAla~ 372 (505)
T PLN02274 298 VTMYQAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQ-----HGVPVIADGGISNSGHIVKALTL 372 (505)
T ss_pred CCHHHHHHHHHcCcCEEEECCCCCccccCccccccCCCcccHHHHHHHHHHh-----cCCeEEEeCCCCCHHHHHHHHHc
Confidence 35566667788999999985 2 222244456666653 679999997776 4445566665
Q ss_pred -cCcee
Q 006566 182 -FDKIR 186 (640)
Q Consensus 182 -v~KVR 186 (640)
++.|=
T Consensus 373 GA~~V~ 378 (505)
T PLN02274 373 GASTVM 378 (505)
T ss_pred CCCEEE
Confidence 66664
No 136
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=81.05 E-value=50 Score=32.32 Aligned_cols=66 Identities=21% Similarity=0.150 Sum_probs=44.6
Q ss_pred HHHHHHHcCCCEEEEecCCHH--HHHHHHHHHHHhhcCCCCcceeecc-CC-C-HHHHHHHhhh-cCceeeCCCCCCc
Q 006566 123 EVMRIADQGADLVRITVQGKR--EADACFEIKNSLVQKNYNIPLVADI-HF-A-PSVALRVAEC-FDKIRVNPGNFAD 194 (640)
Q Consensus 123 Qi~rl~~aGceiVRvtvp~~~--~A~~l~~I~~~L~~~g~~iPLVADI-HF-~-~~~Al~Aa~~-v~KVRINPGN~~d 194 (640)
|+..+.++|+|+|=+-.-... -.+.+..+++ +.+|+++++ .. + ...+..+.+. ++-|-++||--+.
T Consensus 68 ~~~~~~~~Gad~i~vh~~~~~~~~~~~i~~~~~------~g~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~pg~~~~ 139 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVADDATIKGAVKAAKK------HGKEVQVDLINVKDKVKRAKELKELGADYIGVHTGLDEQ 139 (206)
T ss_pred HHHHHHHcCCCEEEEeccCCHHHHHHHHHHHHH------cCCEEEEEecCCCChHHHHHHHHHcCCCEEEEcCCcCcc
Confidence 888999999998865443221 1344444444 578999885 43 2 3677777786 8889999975443
No 137
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=80.95 E-value=68 Score=34.04 Aligned_cols=160 Identities=16% Similarity=0.143 Sum_probs=91.5
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEe-------cCCHHHH-HHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhh-cCc
Q 006566 114 TKDVAGTVEEVMRIADQGADLVRIT-------VQGKREA-DACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDK 184 (640)
Q Consensus 114 T~Dv~atv~Qi~rl~~aGceiVRvt-------vp~~~~A-~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~-v~K 184 (640)
-..++.-++=++.|.++|.+.+=++ +|.+.++ +.++.|.+ ..+..+...+- +.+=...|+++ ++.
T Consensus 22 ~~s~e~k~~ia~~L~~~Gv~~IEvgsf~~p~~~p~~~d~~e~~~~l~~---~~~~~~~~l~~---~~~~ie~A~~~g~~~ 95 (287)
T PRK05692 22 FIPTADKIALIDRLSAAGLSYIEVASFVSPKWVPQMADAAEVMAGIQR---RPGVTYAALTP---NLKGLEAALAAGADE 95 (287)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEeCCCcCcccccccccHHHHHHhhhc---cCCCeEEEEec---CHHHHHHHHHcCCCE
Confidence 3567888888999999999999998 7776544 45556653 12333322222 44444566677 888
Q ss_pred eeeC-CCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeC--CCCCcHhHHHHhCC-ChHHHHH
Q 006566 185 IRVN-PGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTN--HGSLSDRIMSYYGD-SPRGMVE 260 (640)
Q Consensus 185 VRIN-PGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvN--hGSLs~ril~ryGd-tp~gMVe 260 (640)
|+|= |-+=....+ -+..-.+..-+++.+.|+.||++|..++..+- .|.-. .|. +| +
T Consensus 96 v~i~~~~s~~~~~~----------n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~------~~~~~~----~ 155 (287)
T PRK05692 96 VAVFASASEAFSQK----------NINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPY------EGEVPP----E 155 (287)
T ss_pred EEEEEecCHHHHHH----------HhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCC------CCCCCH----H
Confidence 8863 111000000 01112234455688899999999998885443 12211 122 33 4
Q ss_pred HHHHHHHHHHHCCCCcEEEEEEeCChhhHHHHHHHHHHHHH
Q 006566 261 SAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMY 301 (640)
Q Consensus 261 SAle~~~i~e~~~F~diviSmKsSn~~~mV~AyRlL~~~m~ 301 (640)
-.++.++-+.+.|-+ .|+++-|.=..+=+.++.+++.+.
T Consensus 156 ~~~~~~~~~~~~G~d--~i~l~DT~G~~~P~~v~~lv~~l~ 194 (287)
T PRK05692 156 AVADVAERLFALGCY--EISLGDTIGVGTPGQVRAVLEAVL 194 (287)
T ss_pred HHHHHHHHHHHcCCc--EEEeccccCccCHHHHHHHHHHHH
Confidence 445566777788876 577777643333333444444443
No 138
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=80.69 E-value=18 Score=35.11 Aligned_cols=96 Identities=21% Similarity=0.240 Sum_probs=59.6
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEE------ecCCHH-HHHHHHHHHHHhhcCCCCcceeeccCCC--HHHHHHHhhh-cC
Q 006566 114 TKDVAGTVEEVMRIADQGADLVRI------TVQGKR-EADACFEIKNSLVQKNYNIPLVADIHFA--PSVALRVAEC-FD 183 (640)
Q Consensus 114 T~Dv~atv~Qi~rl~~aGceiVRv------tvp~~~-~A~~l~~I~~~L~~~g~~iPLVADIHF~--~~~Al~Aa~~-v~ 183 (640)
-.|.+.+.++++.+.++||++|=+ .+|+.. .-+.++.|++ ..+.|+++|+=.. .+.+..+.++ ++
T Consensus 7 ~~~~~~~~~~~~~~~~~g~d~i~~~~~Dg~~~~~~~~~~~~v~~i~~-----~~~~~v~v~lm~~~~~~~~~~~~~~gad 81 (210)
T TIGR01163 7 SADFARLGEEVKAVEEAGADWIHVDVMDGHFVPNLTFGPPVLEALRK-----YTDLPIDVHLMVENPDRYIEDFAEAGAD 81 (210)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCcccCHHHHHHHHh-----cCCCcEEEEeeeCCHHHHHHHHHHcCCC
Confidence 357889999999999999999998 445533 2344455554 2457766433222 3344455555 66
Q ss_pred ceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeC
Q 006566 184 KIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTN 239 (640)
Q Consensus 184 KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvN 239 (640)
-|=+ ||..-+ .....++.+|++|..+-++++
T Consensus 82 gv~v-h~~~~~------------------------~~~~~~~~~~~~g~~~~~~~~ 112 (210)
T TIGR01163 82 IITV-HPEASE------------------------HIHRLLQLIKDLGAKAGIVLN 112 (210)
T ss_pred EEEE-ccCCch------------------------hHHHHHHHHHHcCCcEEEEEC
Confidence 6544 332111 135567999999988877763
No 139
>KOG2367 consensus Alpha-isopropylmalate synthase/homocitrate synthase [Amino acid transport and metabolism]
Probab=80.59 E-value=31 Score=39.78 Aligned_cols=133 Identities=20% Similarity=0.232 Sum_probs=92.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEecC--CHHHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhhcCceeeCC
Q 006566 112 NDTKDVAGTVEEVMRIADQGADLVRITVQ--GKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNP 189 (640)
Q Consensus 112 t~T~Dv~atv~Qi~rl~~aGceiVRvtvp--~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~v~KVRINP 189 (640)
-++.+++.-.++.+.|++.|.+++-++.| +.++.+.++.|.+.| |+..-+.+=+.-.-+.+..+.|+
T Consensus 73 ga~~~~~qK~eiar~L~~~gvd~IEv~fP~aSe~~~~~~~~i~k~~---g~~~~I~~l~rc~~~di~~tvEA-------- 141 (560)
T KOG2367|consen 73 GAFLTTEQKLEIARQLAKLGVDIIEVGFPVASEQDFEDCKTIAKTL---GYVPVICTLIRCHMDDIERTVEA-------- 141 (560)
T ss_pred CCcCCcHHHHHHHHHHHhcCcCEEEecCcccCcchHHHHHHHHHhC---CCCceEEEeeccchHHHHHHHHH--------
Confidence 34678899999999999999999999977 578999999999973 66555555444444444444443
Q ss_pred CCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHh--CCChHHHHHHHHHHHH
Q 006566 190 GNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYY--GDSPRGMVESAFEFAR 267 (640)
Q Consensus 190 GN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ry--Gdtp~gMVeSAle~~~ 267 (640)
+.-||+--+-.=||+ | .|..+| +.+-+-.+++|.|-++
T Consensus 142 ----------------------------------l~~aKr~~Vh~~~aT-----S-d~~rey~~~kskeevi~~Ave~ik 181 (560)
T KOG2367|consen 142 ----------------------------------LKYAKRPRVHVFIAT-----S-DIHREYKLKKSKEEVIESAVEVIK 181 (560)
T ss_pred ----------------------------------hhccCcceEEEEecc-----c-HHHHHHHhcccHHHHHHHHHHHHH
Confidence 112222223344455 3 455555 4577899999999999
Q ss_pred HHHHCCCCcEEEEEEeCChhhHHHHHHH
Q 006566 268 ICRKLDFHNFLFSMKASNPVVMVQAYRL 295 (640)
Q Consensus 268 i~e~~~F~diviSmKsSn~~~mV~AyRl 295 (640)
+.+++||-++-||.--+.--.-.-++..
T Consensus 182 fvkslg~~~ieFSpEd~~rse~~fl~eI 209 (560)
T KOG2367|consen 182 FVKSLGKWDIEFSPEDFGRSELEFLLEI 209 (560)
T ss_pred HHHhcccceEEECccccccCcHHHHHHH
Confidence 9999999999999876543333333333
No 140
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=80.34 E-value=5.9 Score=39.48 Aligned_cols=72 Identities=21% Similarity=0.279 Sum_probs=49.8
Q ss_pred HHHHHHHHHHcCCCEEEEecCCHHH--HHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhh-cCceeeCCCCCC
Q 006566 120 TVEEVMRIADQGADLVRITVQGKRE--ADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGNFA 193 (640)
Q Consensus 120 tv~Qi~rl~~aGceiVRvtvp~~~~--A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~-v~KVRINPGN~~ 193 (640)
+.+|+..+.++|+|+|=+-.+.... .+.+.++.+..++. ..+|++++.| ++.-|..+.+. ++=|-+|.+++.
T Consensus 77 ~~~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~-~~i~vi~~v~-t~ee~~~a~~~G~d~i~~~~~g~t 151 (221)
T PRK01130 77 TLKEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEY-PGQLLMADCS-TLEEGLAAQKLGFDFIGTTLSGYT 151 (221)
T ss_pred CHHHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhC-CCCeEEEeCC-CHHHHHHHHHcCCCEEEcCCceee
Confidence 4579999999999988776553110 02233444444444 6799999998 77778888887 888888766553
No 141
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=79.93 E-value=89 Score=33.42 Aligned_cols=145 Identities=11% Similarity=0.187 Sum_probs=86.3
Q ss_pred HHcCCC-EEEEecCCHHHHHHHHHHHHHhhcCCCC--------cceeeccCCCHHHHHHH-hhhcCceeeCCCCCCchhh
Q 006566 128 ADQGAD-LVRITVQGKREADACFEIKNSLVQKNYN--------IPLVADIHFAPSVALRV-AECFDKIRVNPGNFADRRA 197 (640)
Q Consensus 128 ~~aGce-iVRvtvp~~~~A~~l~~I~~~L~~~g~~--------iPLVADIHF~~~~Al~A-a~~v~KVRINPGN~~d~~k 197 (640)
.+.|.+ +.=+|+-+. ....|..+-.++.+.|+. -|--.|-||.+..-+.. ++.....+|.++-|-...-
T Consensus 79 ~~~g~~~i~Hltcr~~-n~~~l~~~L~~~~~~GI~niLaLrGD~p~~~~~~~~~a~dLv~li~~~~~~~i~va~yPeghp 157 (296)
T PRK09432 79 KRTGLEAAPHLTCIDA-TPDELRTIAKDYWNNGIRHIVALRGDLPPGSGKPEMYASDLVTLLKSVADFDISVAAYPEVHP 157 (296)
T ss_pred HHhCCCeeeecccCCC-CHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCcCHHHHHHHHHHhCCCccceeeCCCCCC
Confidence 455766 556676665 555666666666666654 24445555544322211 1113344554444432110
Q ss_pred hccccccchHHHHHHHhhhHhhH------------------HHHHHHHHHcC--CeEEEee---------------CCCC
Q 006566 198 QFEQLEYTDDEYQKELQHIEEVF------------------SPLVEKCKKYG--RAVRIGT---------------NHGS 242 (640)
Q Consensus 198 ~F~~~eYtdeeY~~Ele~I~~~f------------------~~lV~~~Ke~g--~aIRIGv---------------NhGS 242 (640)
.-..++.+++++++|+ ..+++.|++.| +||..|+ .+-+
T Consensus 158 -------~~~~~~~dl~~Lk~K~~aGA~~~iTQ~~Fd~~~~~~f~~~~~~~Gi~vPIi~GI~pi~s~~~~~~~~~~~Gv~ 230 (296)
T PRK09432 158 -------EAKSAQADLINLKRKVDAGANRAITQFFFDVESYLRFRDRCVSAGIDVEIVPGILPVSNFKQLKKFADMTNVR 230 (296)
T ss_pred -------CCCCHHHHHHHHHHHHHcCCCeeecccccchHHHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHHccCCC
Confidence 0112455666666655 79999999998 9999997 5567
Q ss_pred CcHhHHHHh---CCChHH----HHHHHHHHHHHHHHCCCCcEEEE
Q 006566 243 LSDRIMSYY---GDSPRG----MVESAFEFARICRKLDFHNFLFS 280 (640)
Q Consensus 243 Ls~ril~ry---Gdtp~g----MVeSAle~~~i~e~~~F~diviS 280 (640)
+++.+.+++ .|.+++ =++-|.|.++-+.++|...+-|-
T Consensus 231 vP~~l~~~l~~~~d~~~~~~~~Gi~~a~e~i~~L~~~gv~GvH~y 275 (296)
T PRK09432 231 IPAWMAKMFDGLDDDAETRKLVGASIAMDMVKILSREGVKDFHFY 275 (296)
T ss_pred CCHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEe
Confidence 777776665 355543 34567788888888888777664
No 142
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=79.92 E-value=72 Score=32.30 Aligned_cols=142 Identities=11% Similarity=-0.004 Sum_probs=87.1
Q ss_pred HHHHHHHHHHcCCCEEEEec-------CCHHHHHHHHHHHHHhhcCCCCcceeeccC----C-----CHH----------
Q 006566 120 TVEEVMRIADQGADLVRITV-------QGKREADACFEIKNSLVQKNYNIPLVADIH----F-----APS---------- 173 (640)
Q Consensus 120 tv~Qi~rl~~aGceiVRvtv-------p~~~~A~~l~~I~~~L~~~g~~iPLVADIH----F-----~~~---------- 173 (640)
..+.+..++++|-+-|=+.. ++. ....++++++.+.+.|..+..+.=.| | ++.
T Consensus 15 l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~-~~~~~~~l~~~~~~~gl~v~s~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 93 (275)
T PRK09856 15 IEHAFRDASELGYDGIEIWGGRPHAFAPDL-KAGGIKQIKALAQTYQMPIIGYTPETNGYPYNMMLGDEHMRRESLDMIK 93 (275)
T ss_pred HHHHHHHHHHcCCCEEEEccCCcccccccc-CchHHHHHHHHHHHcCCeEEEecCcccCcCccccCCCHHHHHHHHHHHH
Confidence 34455566677777766642 111 23456777888888888776554222 1 221
Q ss_pred -HHHHHhhh-cCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEee-CCCCCcHhHHHH
Q 006566 174 -VALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT-NHGSLSDRIMSY 250 (640)
Q Consensus 174 -~Al~Aa~~-v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGv-NhGSLs~ril~r 250 (640)
....|... +..|++.||..+... .+.+..+++.+.+.++.+.|+++|+ ||++ ||+--.
T Consensus 94 ~~i~~a~~lGa~~i~~~~~~~~~~~-----------~~~~~~~~~~~~l~~l~~~a~~~gv--~l~iE~~~~~~------ 154 (275)
T PRK09856 94 LAMDMAKEMNAGYTLISAAHAGYLT-----------PPNVIWGRLAENLSELCEYAENIGM--DLILEPLTPYE------ 154 (275)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCCCC-----------CHHHHHHHHHHHHHHHHHHHHHcCC--EEEEecCCCCc------
Confidence 11244445 899999999654211 2345667888899999999999986 5565 333211
Q ss_pred hCCChHHHHHHHHHHHHHHHHCCCCcEEEEEEeCCh
Q 006566 251 YGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNP 286 (640)
Q Consensus 251 yGdtp~gMVeSAle~~~i~e~~~F~diviSmKsSn~ 286 (640)
...+.++.+.+++++..+=.++.+-+-..+.
T Consensus 155 -----~~~~~t~~~~~~l~~~~~~~~v~~~~D~~h~ 185 (275)
T PRK09856 155 -----SNVVCNANDVLHALALVPSPRLFSMVDICAP 185 (275)
T ss_pred -----ccccCCHHHHHHHHHHcCCCcceeEEeecch
Confidence 0224455677888888887777777766653
No 143
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=79.82 E-value=69 Score=35.42 Aligned_cols=204 Identities=19% Similarity=0.203 Sum_probs=132.0
Q ss_pred eEEEceeecCCCCceEEEeccCCCCCC----HHHHHHHHHHHHHcCCCEEEEe--cCCH--------------HHHHHHH
Q 006566 90 TVMVGNVAIGSEHPIRVQTMTTNDTKD----VAGTVEEVMRIADQGADLVRIT--VQGK--------------READACF 149 (640)
Q Consensus 90 ~V~VG~v~IGG~~PI~VQSMt~t~T~D----v~atv~Qi~rl~~aGceiVRvt--vp~~--------------~~A~~l~ 149 (640)
.+++|++.| .|-|++..||.-...+ ++..++=-.+.+.-|+=++=++ +.+. +..+.++
T Consensus 9 P~~lg~~~L--~NRivmaPm~~~~a~~dG~pt~~~~~yy~~RA~gG~Glii~~~~~v~~~g~~~~~~~~l~~d~~i~~~~ 86 (363)
T COG1902 9 PLKLGGLTL--KNRIVMAPMTRNRATPDGLPTDLLAEYYAERAKGGAGLIITEATAVDPGGRGYPGQPGLWSDAQIPGLK 86 (363)
T ss_pred CeeECCEEe--ccceeecCcccccccCCCCCCHHHHHHHHHHhcCCCCEEEEeeEeeCcccccCCCCCccCChhHhHHHH
Confidence 478888888 8999999999877653 7788888888899555544333 2111 3388999
Q ss_pred HHHHHhhcCCCCcceeeccCCCHHHHHHHhhh------cCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHH
Q 006566 150 EIKNSLVQKNYNIPLVADIHFAPSVALRVAEC------FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPL 223 (640)
Q Consensus 150 ~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~------v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~l 223 (640)
++.+..++.|. .++.=||-..+-|...... -..++..++. .....+.|+ +|++.|.+.|..=
T Consensus 87 ~vt~avH~~G~--~i~iQL~H~Gr~~~~~~~~~~~~vapS~~~~~~~~------~~~pr~mt~----~eI~~ii~~f~~A 154 (363)
T COG1902 87 RLTEAVHAHGA--KIFIQLWHAGRKARASHPWLPSAVAPSAIPAPGGR------RATPRELTE----EEIEEVIEDFARA 154 (363)
T ss_pred HHHHHHHhcCC--eEEEEeccCcccccccccCCCcccCCCccccccCC------CCCCccCCH----HHHHHHHHHHHHH
Confidence 99999999888 6666666665444322110 1223332220 122334443 5677888888888
Q ss_pred HHHHHHcCC-eEEEeeCCCCCcHhHHH--------HhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEEeCC--h----hh
Q 006566 224 VEKCKKYGR-AVRIGTNHGSLSDRIMS--------YYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASN--P----VV 288 (640)
Q Consensus 224 V~~~Ke~g~-aIRIGvNhGSLs~ril~--------ryGdtp~gMVeSAle~~~i~e~~~F~diviSmKsSn--~----~~ 288 (640)
.+.||+-|- .+-|=--||-|=+.+++ +||.+.|--.-=++|-++-.++.==.++.|.++-|- . -.
T Consensus 155 A~rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~~~~~g~ 234 (363)
T COG1902 155 ARRAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVGADFPVGVRLSPDDFFDGGGL 234 (363)
T ss_pred HHHHHHcCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHhCCCceEEEEECccccCCCCCC
Confidence 888888775 46666678988888777 588777665555666665444433333344444442 2 22
Q ss_pred HHHHHHHHHHHHHHcC-CCc
Q 006566 289 MVQAYRLLVAEMYVHG-WDY 307 (640)
Q Consensus 289 mV~AyRlL~~~m~~~g-~dy 307 (640)
.++.+..+++.|.+.| ++|
T Consensus 235 ~~~e~~~la~~L~~~G~~d~ 254 (363)
T COG1902 235 TIEEAVELAKALEEAGLVDY 254 (363)
T ss_pred CHHHHHHHHHHHHhcCCccE
Confidence 5667888888888888 576
No 144
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=79.73 E-value=3.4 Score=45.32 Aligned_cols=64 Identities=25% Similarity=0.230 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHcCCCEEE--------EecCCH-----HHHHHHHHHHHHhhcCCCCcceeec--cCCCHHHHHHHhhh-c
Q 006566 119 GTVEEVMRIADQGADLVR--------ITVQGK-----READACFEIKNSLVQKNYNIPLVAD--IHFAPSVALRVAEC-F 182 (640)
Q Consensus 119 atv~Qi~rl~~aGceiVR--------vtvp~~-----~~A~~l~~I~~~L~~~g~~iPLVAD--IHF~~~~Al~Aa~~-v 182 (640)
+|-++.+.|++||+|.|| .|++-. -...++.+..+. ++++.+|+||| |++.-.+| +|+-+ +
T Consensus 160 ~T~e~a~~Li~aGAD~vKVGIGpGSiCtTr~vtGvG~PQltAV~~~a~~--a~~~gvpiIADGGi~~sGDI~-KAlaaGA 236 (346)
T PRK05096 160 VTGEMVEELILSGADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECADA--AHGLGGQIVSDGGCTVPGDVA-KAFGGGA 236 (346)
T ss_pred cCHHHHHHHHHcCCCEEEEcccCCccccCccccccChhHHHHHHHHHHH--HHHcCCCEEecCCcccccHHH-HHHHcCC
Q ss_pred Cce
Q 006566 183 DKI 185 (640)
Q Consensus 183 ~KV 185 (640)
+.|
T Consensus 237 d~V 239 (346)
T PRK05096 237 DFV 239 (346)
T ss_pred CEE
No 145
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=79.53 E-value=4 Score=46.28 Aligned_cols=67 Identities=19% Similarity=0.255 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHcCCCEEEE--------ecC-----CHHHHHHHHHHHHHhhcCCCCcceeeccCCC-HHHHHHHhhh-cC
Q 006566 119 GTVEEVMRIADQGADLVRI--------TVQ-----GKREADACFEIKNSLVQKNYNIPLVADIHFA-PSVALRVAEC-FD 183 (640)
Q Consensus 119 atv~Qi~rl~~aGceiVRv--------tvp-----~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~-~~~Al~Aa~~-v~ 183 (640)
+|.++.+.|++||||.||| |++ +.-...++.++.+..+ .+.+|+|||-+.. |.-+-+|+.+ ++
T Consensus 277 ~t~~~a~~l~~aGad~v~vgig~gsictt~~~~~~~~p~~~av~~~~~~~~--~~~~~via~ggi~~~~~~~~al~~ga~ 354 (479)
T PRK07807 277 VTAEGTRDLVEAGADIVKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAAAR--ELGAHVWADGGVRHPRDVALALAAGAS 354 (479)
T ss_pred CCHHHHHHHHHcCCCEEEECccCCcccccccccCCchhHHHHHHHHHHHHH--hcCCcEEecCCCCCHHHHHHHHHcCCC
Confidence 4678888899999999992 322 3356666777666433 3679999996554 3444456555 66
Q ss_pred ceee
Q 006566 184 KIRV 187 (640)
Q Consensus 184 KVRI 187 (640)
.|=+
T Consensus 355 ~v~~ 358 (479)
T PRK07807 355 NVMI 358 (479)
T ss_pred eeec
Confidence 6644
No 146
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=79.45 E-value=15 Score=39.57 Aligned_cols=115 Identities=22% Similarity=0.282 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHcCCCEEEEe----cCCHH----------------------------------HHHHHHHHHHHhhcCCC
Q 006566 119 GTVEEVMRIADQGADLVRIT----VQGKR----------------------------------EADACFEIKNSLVQKNY 160 (640)
Q Consensus 119 atv~Qi~rl~~aGceiVRvt----vp~~~----------------------------------~A~~l~~I~~~L~~~g~ 160 (640)
.|+++..|-+++|+++||-| +++.- .-+-|+++++. .
T Consensus 122 ~~l~EAlrai~~GadmI~Tt~e~gTg~v~~av~hlr~~~~~~~~~~~~~~~~~~~~~a~~~~~~~elLkei~~~-----~ 196 (287)
T TIGR00343 122 RDLGEALRRINEGAAMIRTKGEAGTGNIVEAVRHMRKINEEIRQIQNMLEEEDLAAVAKELRVPVELLLEVLKL-----G 196 (287)
T ss_pred CCHHHHHHHHHCCCCEEeccccCCCccHHHHHHHHHHHHHHHHHHhcccchhHHhhhhcccCCCHHHHHHHHHh-----C
Confidence 46778888899999999999 34311 12334445442 4
Q ss_pred Cccee--eccCC-CHHHHHHHhhh-cCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEE
Q 006566 161 NIPLV--ADIHF-APSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRI 236 (640)
Q Consensus 161 ~iPLV--ADIHF-~~~~Al~Aa~~-v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRI 236 (640)
++|+| |--.. +|.-|-.+++. ++.|=+--|=+...+ ..-.-..|.+.+.+..+ -.-+.+.++.+|-+| .
T Consensus 197 ~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~d-----P~~~akafv~ai~~~~~-~~~~~e~s~~~~~~m-~ 269 (287)
T TIGR00343 197 KLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSN-----PEKLAKAIVEATTHYDN-PEKLAEVSKDLGEAM-K 269 (287)
T ss_pred CCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCCC-----HHHHHHHHHHHHHHcCC-HHHHHHHHccccccC-C
Confidence 69999 99888 89999999998 998877554443211 00112345555555433 667889999999999 5
Q ss_pred eeCCCCCcH
Q 006566 237 GTNHGSLSD 245 (640)
Q Consensus 237 GvNhGSLs~ 245 (640)
|.|-.+|+.
T Consensus 270 g~~~~~~~~ 278 (287)
T TIGR00343 270 GISISSISE 278 (287)
T ss_pred CCccccCCH
Confidence 999999965
No 147
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=79.40 E-value=1e+02 Score=35.64 Aligned_cols=165 Identities=15% Similarity=0.172 Sum_probs=95.7
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCC--HHHHHHHHHHHHHhhc-----CCCCcceee---ccC-CCHHHHHHHhhhc
Q 006566 114 TKDVAGTVEEVMRIADQGADLVRITVQG--KREADACFEIKNSLVQ-----KNYNIPLVA---DIH-FAPSVALRVAECF 182 (640)
Q Consensus 114 T~Dv~atv~Qi~rl~~aGceiVRvtvp~--~~~A~~l~~I~~~L~~-----~g~~iPLVA---DIH-F~~~~Al~Aa~~v 182 (640)
...++.-++=++.|.++|.+++=+..|. .+++++++.|.+.+.. .++ .|.+. -.+ =+-+.|.+|...+
T Consensus 102 ~fs~eeKi~Ia~~L~~~GVd~IEvG~Pa~s~~e~e~i~~i~~~~~~~~~~~~~l-~~~i~a~~R~~~~dId~a~~a~~~a 180 (503)
T PLN03228 102 SLTPPQKLEIARQLAKLRVDIMEVGFPGSSEEEFEAVKTIAKTVGNEVDEETGY-VPVICGIARCKKRDIEAAWEALKYA 180 (503)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHhccccccccccc-ceEEeeecccCHhhHHHHHHhhccc
Confidence 4567888888899999999999999874 6788889999875432 111 34444 000 0224555554332
Q ss_pred CceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCC-eEEEeeCCCCCcHhHHHHhCCChHHHHHH
Q 006566 183 DKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGR-AVRIGTNHGSLSDRIMSYYGDSPRGMVES 261 (640)
Q Consensus 183 ~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~-aIRIGvNhGSLs~ril~ryGdtp~gMVeS 261 (640)
..-||+=-.=.+.... ...+..-.+.+-+.+.+.|+.||++|. .++.|..-+|-.+ + +-
T Consensus 181 ~~~~V~i~i~~Sd~h~-------~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~EDa~Rtd---------~----ef 240 (503)
T PLN03228 181 KRPRILAFTSTSDIHM-------KYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQFGCEDGGRSD---------K----EF 240 (503)
T ss_pred CCCEEEEEecCCHHHH-------HHHhCCCHHHHHHHHHHHHHHHHHcCCceEEeccccccccC---------H----HH
Confidence 2234431100010000 001222345666778899999999997 4888885444332 2 23
Q ss_pred HHHHHHHHHHCCCCcEEEEEEeCChhhHHHHHHHHHHHHH
Q 006566 262 AFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMY 301 (640)
Q Consensus 262 Ale~~~i~e~~~F~diviSmKsSn~~~mV~AyRlL~~~m~ 301 (640)
++++++-+.+.|-+. |.++-+.=..+=..+..++..+.
T Consensus 241 l~~~~~~a~~~Gad~--I~l~DTvG~~tP~~v~~lV~~l~ 278 (503)
T PLN03228 241 LCKILGEAIKAGATS--VGIADTVGINMPHEFGELVTYVK 278 (503)
T ss_pred HHHHHHHHHhcCCCE--EEEecCCCCCCHHHHHHHHHHHH
Confidence 366777777778765 56676654444444455555543
No 148
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=79.38 E-value=20 Score=43.22 Aligned_cols=157 Identities=17% Similarity=0.232 Sum_probs=96.7
Q ss_pred HHHHHHHHHHH-cCCCEEEEecCCHHHHHHHHHHHHHhhcCCCC-----cceeeccCCCHHHHHHHhhh---cCceeeCC
Q 006566 119 GTVEEVMRIAD-QGADLVRITVQGKREADACFEIKNSLVQKNYN-----IPLVADIHFAPSVALRVAEC---FDKIRVNP 189 (640)
Q Consensus 119 atv~Qi~rl~~-aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~-----iPLVADIHF~~~~Al~Aa~~---v~KVRINP 189 (640)
.-++-|.|..+ +|+.=|||-+|-+..++-+.++++.++..|+. +|+++=| =.|..++.+=++ +|-+=|.|
T Consensus 621 ~qlraI~rald~~G~~~~~ImvPmV~s~eEa~~~~~~~~~~g~~~~~~~~~vg~MI-Etp~av~~~deIa~~vDfi~IGt 699 (795)
T PRK06464 621 LECEAIKRVREEMGLTNVEVMIPFVRTVEEAEKVIELLAENGLKRGENGLKVIMMC-EIPSNALLAEEFLEYFDGFSIGS 699 (795)
T ss_pred HHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHHHhCccccccCcEEEEEE-cCHHHHHHHHHHHHhCCEEEECc
Confidence 44566667677 79888999999999998888888888877653 3443333 246666644332 88899999
Q ss_pred CCCCchh----hhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCCChHHHHHHHHHH
Q 006566 190 GNFADRR----AQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEF 265 (640)
Q Consensus 190 GN~~d~~----k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGdtp~gMVeSAle~ 265 (640)
..+.--- +.-... ..-|+.....+.+.++.+++.|+++|+++ |+ .|-.- ++.| ++
T Consensus 700 nDLtq~~lg~dR~n~~v---~~~~~~~hPav~~ai~~vi~aa~~~g~~v--gi-cge~a-------~~~p--------~~ 758 (795)
T PRK06464 700 NDLTQLTLGLDRDSGLV---AHLFDERNPAVKKLISMAIKAAKKAGKYV--GI-CGQAP-------SDHP--------DF 758 (795)
T ss_pred hHHHHHHhCcCCCchhh---hhccCCCCHHHHHHHHHHHHHHHHcCCEE--EE-cCCCC-------CCcH--------HH
Confidence 8765310 000000 01123333456667888999999999987 66 44220 1224 46
Q ss_pred HHHHHHCCCCcEEEEEEeCChhhHHHHHHHHHHH
Q 006566 266 ARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAE 299 (640)
Q Consensus 266 ~~i~e~~~F~diviSmKsSn~~~mV~AyRlL~~~ 299 (640)
++.+-.+||+.+.++ +.....+-.+.|.+-++
T Consensus 759 ~~~l~~~G~~~ls~~--~d~~~~~k~~i~~~~~~ 790 (795)
T PRK06464 759 AEWLVEEGIDSISLN--PDAVVDTWLAVAEVEKK 790 (795)
T ss_pred HHHHHHCCCCEEEEc--chhHHHHHHHHHHhHHH
Confidence 667788999866554 44444444444444433
No 149
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=79.09 E-value=30 Score=39.06 Aligned_cols=142 Identities=20% Similarity=0.280 Sum_probs=92.5
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhhcCceeeCC
Q 006566 110 TTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNP 189 (640)
Q Consensus 110 t~t~T~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~v~KVRINP 189 (640)
|+.+..|++.-++.++...++|||- +-|.--.-.|.+||+.+.+ .+++|+=.= =-|.++.++.+
T Consensus 69 tS~~~~d~~~E~~K~~~A~~~GADt----iMDLStGgdl~~iR~~il~-~s~vpvGTV--PiYqa~~~~~~--------- 132 (423)
T TIGR00190 69 TSADTSDIEEEVEKALIAIKYGADT----VMDLSTGGDLDEIRKAILD-AVPVPVGTV--PIYQAAEKVHG--------- 132 (423)
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCe----EeeccCCCCHHHHHHHHHH-cCCCCccCc--cHHHHHHHhcC---------
Confidence 6678899999999999999999994 3444455577888887765 345443100 00565554431
Q ss_pred CCCCchhhhccccccchHHHHHHHhh-hHh----------hHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhC-CChHH
Q 006566 190 GNFADRRAQFEQLEYTDDEYQKELQH-IEE----------VFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYG-DSPRG 257 (640)
Q Consensus 190 GN~~d~~k~F~~~eYtdeeY~~Ele~-I~~----------~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryG-dtp~g 257 (640)
++.+ .|.+++-+.+|+ .++ --++.++..|+.++-+-|=--.||+=-.-|...+ .+|
T Consensus 133 -~~~~---------mt~d~~~~~ie~qa~dGVDfmTiH~Gi~~~~~~~~~~~~R~~giVSRGGs~~~~WM~~~~~ENP-- 200 (423)
T TIGR00190 133 -AVED---------MDEDDMFRAIEKQAKDGVDFMTIHAGVLLEYVERLKRSGRITGIVSRGGAILAAWMLHHHKENP-- 200 (423)
T ss_pred -Chhh---------CCHHHHHHHHHHHHHhCCCEEEEccchhHHHHHHHHhCCCccCeecCcHHHHHHHHHHcCCcCc--
Confidence 3322 344555444433 222 2467888899989888888888898888887777 466
Q ss_pred HHHHHHHHHHHHHHCCCCcEEEEEE
Q 006566 258 MVESAFEFARICRKLDFHNFLFSMK 282 (640)
Q Consensus 258 MVeSAle~~~i~e~~~F~diviSmK 282 (640)
+-|-==+.++||++ ||+++|+=
T Consensus 201 lye~fD~lLeI~~~---yDVtlSLG 222 (423)
T TIGR00190 201 LYKNFDYILEIAKE---YDVTLSLG 222 (423)
T ss_pred hHHHHHHHHHHHHH---hCeeeecc
Confidence 44544456667766 56788863
No 150
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=79.06 E-value=3.4 Score=43.30 Aligned_cols=88 Identities=20% Similarity=0.225 Sum_probs=56.2
Q ss_pred cCCCCceEEEeccCCCC--CCHHHHHHHHHHH---------------------HHcCCCEEEEe------cCCHHHHHHH
Q 006566 98 IGSEHPIRVQTMTTNDT--KDVAGTVEEVMRI---------------------ADQGADLVRIT------VQGKREADAC 148 (640)
Q Consensus 98 IGG~~PI~VQSMt~t~T--~Dv~atv~Qi~rl---------------------~~aGceiVRvt------vp~~~~A~~l 148 (640)
++|.+=|.+.=-....| -|...|++-.+.| +++||..|+-- =++...-.+|
T Consensus 88 ~~~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~VlPY~~~D~v~akrL~d~GcaavMPlgsPIGSg~Gi~n~~~l 167 (247)
T PF05690_consen 88 AFGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEDAGCAAVMPLGSPIGSGRGIQNPYNL 167 (247)
T ss_dssp TTS-SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-EEEEEE-S-HHHHHHHHHTT-SEBEEBSSSTTT---SSTHHHH
T ss_pred HcCCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEEeecCCCCHHHHHHHHHCCCCEEEecccccccCcCCCCHHHH
Confidence 44666777776666666 7888888776555 55566555542 2344556778
Q ss_pred HHHHHHhhcCCCCcceeeccCCC-HHHHHHHhhh-cCceeeCCC
Q 006566 149 FEIKNSLVQKNYNIPLVADIHFA-PSVALRVAEC-FDKIRVNPG 190 (640)
Q Consensus 149 ~~I~~~L~~~g~~iPLVADIHF~-~~~Al~Aa~~-v~KVRINPG 190 (640)
+.|+++ +++|+|-|--.- |.=|-.|+|. +|.|=+|-.
T Consensus 168 ~~i~~~-----~~vPvIvDAGiG~pSdaa~AMElG~daVLvNTA 206 (247)
T PF05690_consen 168 RIIIER-----ADVPVIVDAGIGTPSDAAQAMELGADAVLVNTA 206 (247)
T ss_dssp HHHHHH-----GSSSBEEES---SHHHHHHHHHTT-SEEEESHH
T ss_pred HHHHHh-----cCCcEEEeCCCCCHHHHHHHHHcCCceeehhhH
Confidence 888886 699999997664 8888899999 999999964
No 151
>PRK12677 xylose isomerase; Provisional
Probab=78.83 E-value=9.7 Score=41.99 Aligned_cols=155 Identities=16% Similarity=0.147 Sum_probs=96.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEecC--------CHHHHHHHHHHHHHhhcCCCCcceeecc----------CC---
Q 006566 112 NDTKDVAGTVEEVMRIADQGADLVRITVQ--------GKREADACFEIKNSLVQKNYNIPLVADI----------HF--- 170 (640)
Q Consensus 112 t~T~Dv~atv~Qi~rl~~aGceiVRvtvp--------~~~~A~~l~~I~~~L~~~g~~iPLVADI----------HF--- 170 (640)
.++.|.+.. +.+++++|.+-|=+.-+ ..+....+++|++.|.+.|..++.|+== .|
T Consensus 28 ~~~~~~~E~---v~~~a~~Gf~gVElh~~~l~p~~~~~~~~~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~~~g~lts~ 104 (384)
T PRK12677 28 RPPLDPVEA---VHKLAELGAYGVTFHDDDLVPFGATDAERDRIIKRFKKALDETGLVVPMVTTNLFTHPVFKDGAFTSN 104 (384)
T ss_pred CCCCCHHHH---HHHHHHhCCCEEEecccccCCCCCChhhhHHHHHHHHHHHHHcCCeeEEEecCCCCCccccCCcCCCC
Confidence 344465544 56677788887766532 1222347999999999999999876411 11
Q ss_pred CH---HHHH--------HHhhh-cCceeeCCCCCCchhhhccccccc-hHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEe
Q 006566 171 AP---SVAL--------RVAEC-FDKIRVNPGNFADRRAQFEQLEYT-DDEYQKELQHIEEVFSPLVEKCKKYGRAVRIG 237 (640)
Q Consensus 171 ~~---~~Al--------~Aa~~-v~KVRINPGN~~d~~k~F~~~eYt-deeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIG 237 (640)
++ +.|+ .|.+. +..|.+-||--+. +|. ...|.+-+++..+.+..+.+.|+++|--|||+
T Consensus 105 d~~~R~~Ai~~~~r~IdlA~eLGa~~Vvv~~G~~g~--------~~~~~~d~~~a~~~~~eaL~~l~~~A~~~G~gV~la 176 (384)
T PRK12677 105 DRDVRRYALRKVLRNIDLAAELGAKTYVMWGGREGA--------EYDAAKDVRAALDRYREAIDLLAAYVKDQGYDLRFA 176 (384)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCEEEEeeCCCCc--------cCcccCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEE
Confidence 23 2222 34445 8889999995433 121 34577888999999999999999988667778
Q ss_pred eCCCCCcHhHHHHhCCChHHHHHHHHHHHHHHHHCCCCc-EEEEEEeCC
Q 006566 238 TNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHN-FLFSMKASN 285 (640)
Q Consensus 238 vNhGSLs~ril~ryGdtp~gMVeSAle~~~i~e~~~F~d-iviSmKsSn 285 (640)
+=. .-.+. .+.-++.+.-+.+++|++.|=.+ +-+-+=...
T Consensus 177 IEp-----kp~ep---~~~~~l~t~~~al~li~~lg~~~~vGv~lD~gH 217 (384)
T PRK12677 177 LEP-----KPNEP---RGDILLPTVGHALAFIATLEHPEMVGLNPEVGH 217 (384)
T ss_pred Ecc-----CCCCC---CCCeeeCCHHHHHHHHHHhCCCccEEEeeechH
Confidence 722 10111 11235555566667777777554 445533333
No 152
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=78.63 E-value=23 Score=32.89 Aligned_cols=52 Identities=13% Similarity=0.283 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHc-----CCeEEEeeCCCCCcHhHHHHhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEEeCChhh
Q 006566 219 VFSPLVEKCKKY-----GRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVV 288 (640)
Q Consensus 219 ~f~~lV~~~Ke~-----g~aIRIGvNhGSLs~ril~ryGdtp~gMVeSAle~~~i~e~~~F~diviSmKsSn~~~ 288 (640)
.+.++++.+++. +..+.+.+|.+.++++ .++.+.+.|+..+.||+.+.|...
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~tn~~~~~~~------------------~~~~l~~~~~~~i~isl~~~~~~~ 125 (216)
T smart00729 69 QLEELLEAIREILGLADDVEITIETRPGTLTEE------------------LLEALKEAGVNRVSLGVQSGSDEV 125 (216)
T ss_pred HHHHHHHHHHHhCCCCCCeEEEEEeCcccCCHH------------------HHHHHHHcCCCeEEEecccCCHHH
Confidence 366677777776 5678899997767654 566677888889999999877553
No 153
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=78.58 E-value=70 Score=32.32 Aligned_cols=176 Identities=17% Similarity=0.203 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHcCCC---EEEEecCC---HHHHHHHHHHHHHhhcCCCCcceeeccCCC-HHHHHHHhhh-cCceeeCCC
Q 006566 119 GTVEEVMRIADQGAD---LVRITVQG---KREADACFEIKNSLVQKNYNIPLVADIHFA-PSVALRVAEC-FDKIRVNPG 190 (640)
Q Consensus 119 atv~Qi~rl~~aGce---iVRvtvp~---~~~A~~l~~I~~~L~~~g~~iPLVADIHF~-~~~Al~Aa~~-v~KVRINPG 190 (640)
..++-++++.++|++ ++=++..+ ....+.+++|++. .++|++++--.. +.-+....+. ++.|=+|=+
T Consensus 28 d~~~~a~~~~~~G~~~i~i~d~~~~~~~~~~~~~~i~~i~~~-----~~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig~~ 102 (243)
T cd04731 28 DPVELAKRYNEQGADELVFLDITASSEGRETMLDVVERVAEE-----VFIPLTVGGGIRSLEDARRLLRAGADKVSINSA 102 (243)
T ss_pred CHHHHHHHHHHCCCCEEEEEcCCcccccCcccHHHHHHHHHh-----CCCCEEEeCCCCCHHHHHHHHHcCCceEEECch
Confidence 456677788999999 66665332 2234556666663 679999986655 6667777666 888888877
Q ss_pred CCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeC--C-----CCCcHhHHHHhCCChHHHHHHHH
Q 006566 191 NFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTN--H-----GSLSDRIMSYYGDSPRGMVESAF 263 (640)
Q Consensus 191 N~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvN--h-----GSLs~ril~ryGdtp~gMVeSAl 263 (640)
.+.++.. +..+++.+.... |-++++ + |++.-| |- ++.--+++.
T Consensus 103 ~~~~p~~----------------------~~~i~~~~~~~~--i~~~ld~k~~~~~~~~v~~~-----~~-~~~~~~~~~ 152 (243)
T cd04731 103 AVENPEL----------------------IREIAKRFGSQC--VVVSIDAKRRGDGGYEVYTH-----GG-RKPTGLDAV 152 (243)
T ss_pred hhhChHH----------------------HHHHHHHcCCCC--EEEEEEeeecCCCceEEEEc-----CC-ceecCCCHH
Confidence 7665432 455555543222 333332 1 222221 10 001123457
Q ss_pred HHHHHHHHCCCCcEEEEEEeCCh---hhHHHHHHHHHHHHHHcCCCcceEEEeecCCCCCcceeehHHHHHHHhhh-cCC
Q 006566 264 EFARICRKLDFHNFLFSMKASNP---VVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQD-GLG 339 (640)
Q Consensus 264 e~~~i~e~~~F~diviSmKsSn~---~~mV~AyRlL~~~m~~~g~dyPLHLGVTEAG~gedGrIKSAiGIG~LL~D-GIG 339 (640)
++++.+++.|++.++++--..+. ..-.+..+.+.+. .+.|+-. .|-|.|.-.+-.+|.. |+
T Consensus 153 ~~~~~l~~~G~d~i~v~~i~~~g~~~g~~~~~i~~i~~~-----~~~pvia---------~GGi~~~~di~~~l~~~g~- 217 (243)
T cd04731 153 EWAKEVEELGAGEILLTSMDRDGTKKGYDLELIRAVSSA-----VNIPVIA---------SGGAGKPEHFVEAFEEGGA- 217 (243)
T ss_pred HHHHHHHHCCCCEEEEeccCCCCCCCCCCHHHHHHHHhh-----CCCCEEE---------eCCCCCHHHHHHHHHhCCC-
Confidence 88899999999999997544321 1112333334333 5677643 2566677777777765 44
Q ss_pred cEEEe
Q 006566 340 DTIRV 344 (640)
Q Consensus 340 DTIRV 344 (640)
|.+-|
T Consensus 218 dgv~v 222 (243)
T cd04731 218 DAALA 222 (243)
T ss_pred CEEEE
Confidence 44444
No 154
>cd06830 PLPDE_III_ADC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Arginine Decarboxylase. This subfamily includes plants and biosynthetic prokaryotic arginine decarboxylases (ADC, EC 4.1.1.19). ADC is involved in the biosynthesis of putrescine, which is the precursor of aliphatic polyamines in many organisms. It catalyzes the decarboxylation of L-arginine to agmatine, which is then hydrolyzed to putrescine by agmatinase. ADC is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC), which are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. Homodimer formation and the presence of both PLP and Mg2+ cofactors may be required for catalytic activity. Prokaryotic ADCs (biodegradative), which are fold type I PLP-dependent enzymes, are not included in this family.
Probab=78.37 E-value=27 Score=38.48 Aligned_cols=111 Identities=22% Similarity=0.200 Sum_probs=64.6
Q ss_pred HHHHHHHHc---CCCEEEEecCCHHHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhhcCceeeCCCCC------
Q 006566 122 EEVMRIADQ---GADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNF------ 192 (640)
Q Consensus 122 ~Qi~rl~~a---GceiVRvtvp~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~v~KVRINPGN~------ 192 (640)
++++...++ |..+ ++++-+..|.+.|.++.+.+ +....+ -|||||+.-
T Consensus 99 ~~l~~a~~~~~~g~~v-~i~vDs~~EL~~l~~~a~~~---~~~~~v-------------------~lRinp~~~~~~~~~ 155 (409)
T cd06830 99 EYIELALLARKLGHNV-IIVIEKLSELDLILELAKKL---GVKPLL-------------------GVRIKLASKGSGKWQ 155 (409)
T ss_pred HHHHHHHhcCcCCceE-EEEECCHHHHHHHHHHHHHc---CCCceE-------------------EEEEccCCCCCccee
Confidence 445555444 6666 89999999988888887641 111111 279999842
Q ss_pred --CchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEE-e--eCCCCCcHhHHHHhCCChHHHHHHHHHHHH
Q 006566 193 --ADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRI-G--TNHGSLSDRIMSYYGDSPRGMVESAFEFAR 267 (640)
Q Consensus 193 --~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRI-G--vNhGSLs~ril~ryGdtp~gMVeSAle~~~ 267 (640)
+....||-... +.+.++++.+|+++..+|+ | ...||=.... +.| ...++.++++++
T Consensus 156 ~~~~~~sKFGi~~--------------~~~~~~~~~~~~~~~~l~l~GlH~H~GSq~~~~-~~~----~~~~~~~~~~~~ 216 (409)
T cd06830 156 ESGGDRSKFGLTA--------------SEILEVVEKLKEAGMLDRLKLLHFHIGSQITDI-RRI----KSALREAARIYA 216 (409)
T ss_pred ccCCCCCCCCCCH--------------HHHHHHHHHHHhcCcCCeEEEEEEecCCCCCCH-HHH----HHHHHHHHHHHH
Confidence 23233354321 2467788899997654442 3 3344432221 112 456677777777
Q ss_pred HHHHCCC
Q 006566 268 ICRKLDF 274 (640)
Q Consensus 268 i~e~~~F 274 (640)
-+++.|+
T Consensus 217 ~~~~~g~ 223 (409)
T cd06830 217 ELRKLGA 223 (409)
T ss_pred HHHHhCC
Confidence 7777664
No 155
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=78.03 E-value=12 Score=40.10 Aligned_cols=106 Identities=9% Similarity=0.172 Sum_probs=74.7
Q ss_pred cCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCCCcceeeccCC-CHHHHH
Q 006566 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHF-APSVAL 176 (640)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~iPLVADIHF-~~~~Al 176 (640)
+|.+-.|+|=- | ..-+.+.+++-+++|++.|-+.+==-++ ..+-+.+++++++ +++|+.+|=++ ++.-..
T Consensus 183 ~g~~~~l~vDa--N-~~~~~~~A~~~~~~l~~~~i~~iEeP~~-~~d~~~~~~l~~~-----~~ipia~~E~~~~~~~~~ 253 (355)
T cd03321 183 VGDGVGLMVDY--N-QSLTVPEAIERGQALDQEGLTWIEEPTL-QHDYEGHARIASA-----LRTPVQMGENWLGPEEMF 253 (355)
T ss_pred hCCCCEEEEeC--C-CCcCHHHHHHHHHHHHcCCCCEEECCCC-CcCHHHHHHHHHh-----cCCCEEEcCCCcCHHHHH
Confidence 45555666532 2 3356677777777777777655543332 2355677778774 88999999775 566666
Q ss_pred HHhh--hcCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeE
Q 006566 177 RVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAV 234 (640)
Q Consensus 177 ~Aa~--~v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aI 234 (640)
..++ .++-|++.|...|.-.. +.++.+.|+++|+++
T Consensus 254 ~~i~~~~~d~i~~~~~~~GGit~----------------------~~~ia~~A~~~gi~~ 291 (355)
T cd03321 254 KALSAGACDLVMPDLMKIGGVTG----------------------WLRASALAEQAGIPM 291 (355)
T ss_pred HHHHhCCCCeEecCHhhhCCHHH----------------------HHHHHHHHHHcCCee
Confidence 6655 49999999999987443 788999999999987
No 156
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=77.96 E-value=13 Score=39.46 Aligned_cols=67 Identities=18% Similarity=0.344 Sum_probs=52.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCC--------HHHHHHHHHHHHHhhcCCCCcceeeccC--CCHHHHHHHhhhcCce
Q 006566 116 DVAGTVEEVMRIADQGADLVRITVQG--------KREADACFEIKNSLVQKNYNIPLVADIH--FAPSVALRVAECFDKI 185 (640)
Q Consensus 116 Dv~atv~Qi~rl~~aGceiVRvtvp~--------~~~A~~l~~I~~~L~~~g~~iPLVADIH--F~~~~Al~Aa~~v~KV 185 (640)
+.+..+++++++.++|.+.+.+-+-. .++.+.++.|++. -|.+++|..|.+ |++.-|+..++.+++.
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~d~~~v~~ir~~---~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~ 215 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARVRAVREA---VGPDVDLMVDANGRWDLAEAIRLARALEEY 215 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHHHHHHHHHHHHh---hCCCCEEEEECCCCCCHHHHHHHHHHhCcc
Confidence 68889999999999999999997642 4577888888874 356799999997 5666676666666654
No 157
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=77.93 E-value=81 Score=33.62 Aligned_cols=73 Identities=15% Similarity=0.303 Sum_probs=53.5
Q ss_pred ccCCCceeEEEceeecCCCCceEEEeccCCCCCCHHHHHHHHHHHHH-cCCCEEEEecCCHHHHHHHHHHHHHhhcCCCC
Q 006566 83 TVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIAD-QGADLVRITVQGKREADACFEIKNSLVQKNYN 161 (640)
Q Consensus 83 ~~Rr~Tr~V~VG~v~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~rl~~-aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~ 161 (640)
..|-..+..-|.++|+||. .|.+..++-+.|+.+ +||+-|.+-= +.+-++-++.+.+ ..
T Consensus 70 V~rg~~~~~vv~DmPf~sy-------------~~~e~a~~na~rl~~eaGa~aVkiEg-g~~~~~~i~~l~~------~g 129 (263)
T TIGR00222 70 VKRGAPNCLIVTDLPFMSY-------------ATPEQALKNAARVMQETGANAVKLEG-GEWLVETVQMLTE------RG 129 (263)
T ss_pred HHhhCCCceEEeCCCcCCC-------------CCHHHHHHHHHHHHHHhCCeEEEEcC-cHhHHHHHHHHHH------CC
Confidence 3354567888999999821 257888999999888 9999999983 3444455555554 66
Q ss_pred cceeeccCCCHHHH
Q 006566 162 IPLVADIHFAPSVA 175 (640)
Q Consensus 162 iPLVADIHF~~~~A 175 (640)
||+++-|=+.|.-|
T Consensus 130 IpV~gHiGltPq~a 143 (263)
T TIGR00222 130 VPVVGHLGLTPQSV 143 (263)
T ss_pred CCEEEecCCCceeE
Confidence 89999999888643
No 158
>PRK02227 hypothetical protein; Provisional
Probab=77.54 E-value=12 Score=39.35 Aligned_cols=122 Identities=20% Similarity=0.246 Sum_probs=79.3
Q ss_pred eccCCCC-CCHHHHHHHHHHHHHcCCCEEEEecCCHHHH----HHHHHHHHHhhcCCCCcceeeccCCC---------HH
Q 006566 108 TMTTNDT-KDVAGTVEEVMRIADQGADLVRITVQGKREA----DACFEIKNSLVQKNYNIPLVADIHFA---------PS 173 (640)
Q Consensus 108 SMt~t~T-~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~A----~~l~~I~~~L~~~g~~iPLVADIHF~---------~~ 173 (640)
|.|-.|- .+.......+......|.|+|-|-..+.+.. +.++.+.+.++...-+..+||-...| +.
T Consensus 56 SAtiGD~p~~p~~~~~aa~~~a~~GvDyVKvGl~~~~~~~~~~~~~~~v~~a~~~~~~~~~vVav~yaD~~r~~~~~~~~ 135 (238)
T PRK02227 56 SATIGDVPYKPGTISLAALGAAATGADYVKVGLYGGKTAEEAVEVMKAVVRAVKDLDPGKIVVAAGYADAHRVGSVSPLS 135 (238)
T ss_pred eeeccCCCCCchHHHHHHHHHHhhCCCEEEEcCCCCCcHHHHHHHHHHHHHhhhhcCCCCeEEEEEecccccccCCChHH
Confidence 4444442 3444455667889999999999998754433 44555555566666678888655555 33
Q ss_pred HHHHHhhh-cCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHh
Q 006566 174 VALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDR 246 (640)
Q Consensus 174 ~Al~Aa~~-v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~r 246 (640)
+-..|++. ++-+=|--.. .|++.-|+... .+.+..||+.|+++|.-. |. .|||...
T Consensus 136 l~~~a~~aGf~g~MlDTa~-Kdg~~Lfd~l~-------------~~~L~~Fv~~ar~~Gl~~--gL-AGSL~~~ 192 (238)
T PRK02227 136 LPAIAADAGFDGAMLDTAI-KDGKSLFDHMD-------------EEELAEFVAEARSHGLMS--AL-AGSLKFE 192 (238)
T ss_pred HHHHHHHcCCCEEEEeccc-CCCcchHhhCC-------------HHHHHHHHHHHHHcccHh--Hh-cccCchh
Confidence 44455566 7777664332 34444566554 356889999999999776 65 8999654
No 159
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=77.51 E-value=4 Score=41.49 Aligned_cols=67 Identities=25% Similarity=0.402 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHcCCCEEEEecC-----CHHHHHHHHHHHHHhhcCCCCcceeeccCCC-HHHHHHHhhh-cCceeeC
Q 006566 119 GTVEEVMRIADQGADLVRITVQ-----GKREADACFEIKNSLVQKNYNIPLVADIHFA-PSVALRVAEC-FDKIRVN 188 (640)
Q Consensus 119 atv~Qi~rl~~aGceiVRvtvp-----~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~-~~~Al~Aa~~-v~KVRIN 188 (640)
+|+++.+...++|||+|=-|-- +..+--++.-|++ |.+. .+|+||.-|++ |.-|..|++. +..|=|.
T Consensus 100 st~ee~~~A~~~G~D~I~TTLsGYT~~t~~~~pD~~lv~~-l~~~--~~pvIaEGri~tpe~a~~al~~GA~aVVVG 173 (192)
T PF04131_consen 100 STLEEAINAAELGFDIIGTTLSGYTPYTKGDGPDFELVRE-LVQA--DVPVIAEGRIHTPEQAAKALELGAHAVVVG 173 (192)
T ss_dssp SSHHHHHHHHHTT-SEEE-TTTTSSTTSTTSSHHHHHHHH-HHHT--TSEEEEESS--SHHHHHHHHHTT-SEEEE-
T ss_pred CCHHHHHHHHHcCCCEEEcccccCCCCCCCCCCCHHHHHH-HHhC--CCcEeecCCCCCHHHHHHHHhcCCeEEEEC
Confidence 5788899999999999987721 1124556666664 5554 79999999997 9999999998 8888663
No 160
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=77.20 E-value=6.5 Score=44.75 Aligned_cols=67 Identities=21% Similarity=0.286 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHcCCCEEEEec-CC------------HHHHHHHHHHHHHhhcCCCCcceeeccC-CCHHHHHHHhhh-cC
Q 006566 119 GTVEEVMRIADQGADLVRITV-QG------------KREADACFEIKNSLVQKNYNIPLVADIH-FAPSVALRVAEC-FD 183 (640)
Q Consensus 119 atv~Qi~rl~~aGceiVRvtv-p~------------~~~A~~l~~I~~~L~~~g~~iPLVADIH-F~~~~Al~Aa~~-v~ 183 (640)
.|.++.+.+++||||.|++.+ |+ .....++.++.+.+++ +++|++||-. .+|.-+.+|+.. ++
T Consensus 291 ~t~~~a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~--~~v~vIadGGi~~~~di~kAla~GA~ 368 (495)
T PTZ00314 291 VTADQAKNLIDAGADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYARE--RGVPCIADGGIKNSGDICKALALGAD 368 (495)
T ss_pred CCHHHHHHHHHcCCCEEEECCcCCcccccchhccCCCChHHHHHHHHHHHhh--cCCeEEecCCCCCHHHHHHHHHcCCC
Confidence 355788889999999999753 22 2344565566554433 5699999977 567777788777 77
Q ss_pred ceee
Q 006566 184 KIRV 187 (640)
Q Consensus 184 KVRI 187 (640)
.|=+
T Consensus 369 ~Vm~ 372 (495)
T PTZ00314 369 CVML 372 (495)
T ss_pred EEEE
Confidence 7754
No 161
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=77.16 E-value=76 Score=33.09 Aligned_cols=161 Identities=14% Similarity=0.117 Sum_probs=98.0
Q ss_pred HHHHHHcCCCEEEEe---------cCCH------HHHHHHHHHHHHhhcCCCC-cceeeccCCCH----HHHHH----Hh
Q 006566 124 VMRIADQGADLVRIT---------VQGK------READACFEIKNSLVQKNYN-IPLVADIHFAP----SVALR----VA 179 (640)
Q Consensus 124 i~rl~~aGceiVRvt---------vp~~------~~A~~l~~I~~~L~~~g~~-iPLVADIHF~~----~~Al~----Aa 179 (640)
.+-++++|+|.+=++ .||. +-....+.|++ +.+ +|++||+=|-+ .-+.. .+
T Consensus 25 A~i~e~aG~dai~v~~s~~a~~~G~pD~~~vtl~em~~~~~~I~r-----~~~~~pviaD~~~G~g~~~~~~~~~~~~l~ 99 (240)
T cd06556 25 AKQFADAGLNVMLVGDSQGMTVAGYDDTLPYPVNDVPYHVRAVRR-----GAPLALIVADLPFGAYGAPTAAFELAKTFM 99 (240)
T ss_pred HHHHHHcCCCEEEEChHHHHHhcCCCCCCCcCHHHHHHHHHHHHh-----hCCCCCEEEeCCCCCCcCHHHHHHHHHHHH
Confidence 344567799998776 2332 23444555555 576 79999998873 22222 22
Q ss_pred hh-cCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeE--EEeeCCCCC-cHhHHHHhCCCh
Q 006566 180 EC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAV--RIGTNHGSL-SDRIMSYYGDSP 255 (640)
Q Consensus 180 ~~-v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aI--RIGvNhGSL-s~ril~ryGdtp 255 (640)
+. ++.|-|--| . .+.+.++..++.+++| |+|...-++ +....+.||-+.
T Consensus 100 ~aGa~gv~iED~-----~----------------------~~~~~i~ai~~a~i~ViaRtd~~pq~~~~~gg~~~~~~~~ 152 (240)
T cd06556 100 RAGAAGVKIEGG-----E----------------------WHIETLQMLTAAAVPVIAHTGLTPQSVNTSGGDEGQYRGD 152 (240)
T ss_pred HcCCcEEEEcCc-----H----------------------HHHHHHHHHHHcCCeEEEEeCCchhhhhccCCceeeccCH
Confidence 23 455544433 1 1334566667777776 666632222 111123456555
Q ss_pred HHHHHHHHHHHHHHHHCCCCcEEEEEEeCChhhHHHHHHHHHHHHHHcCCCcceEEEeecCCCCCcceeehHHHH
Q 006566 256 RGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGI 330 (640)
Q Consensus 256 ~gMVeSAle~~~i~e~~~F~diviSmKsSn~~~mV~AyRlL~~~m~~~g~dyPLHLGVTEAG~gedGrIKSAiGI 330 (640)
.+ .+.++|-++.+++.|=+=+++-+. + .+..+.+++. .+-|+..- =+|.+-||++-..-++
T Consensus 153 ~~-~~~ai~Ra~ay~~AGAd~i~~e~~--~----~e~~~~i~~~-----~~~P~~~~--gag~~~dgq~lv~~d~ 213 (240)
T cd06556 153 EA-GEQLIADALAYAPAGADLIVMECV--P----VELAKQITEA-----LAIPLAGI--GAGSGTDGQFLVLADA 213 (240)
T ss_pred HH-HHHHHHHHHHHHHcCCCEEEEcCC--C----HHHHHHHHHh-----CCCCEEEE--ecCcCCCceEEeHHhh
Confidence 55 567999999999999999998754 2 4555667777 78897542 2567888888777665
No 162
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=76.87 E-value=12 Score=40.47 Aligned_cols=68 Identities=15% Similarity=0.314 Sum_probs=52.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCC----HHHHHHHHHHHHHhhcCCCCcceeeccCC--CHHHHHHHhhhcCce
Q 006566 115 KDVAGTVEEVMRIADQGADLVRITVQG----KREADACFEIKNSLVQKNYNIPLVADIHF--APSVALRVAECFDKI 185 (640)
Q Consensus 115 ~Dv~atv~Qi~rl~~aGceiVRvtvp~----~~~A~~l~~I~~~L~~~g~~iPLVADIHF--~~~~Al~Aa~~v~KV 185 (640)
.+.+..++++.+..++|.+-+.+.+-. .++.+.++.||+. -|-+++|..|.|- ++.-|+..++.+++.
T Consensus 142 ~~~~~~~~~a~~~~~~Gf~~~Kik~~~~~~~~~di~~i~~vR~~---~G~~~~l~vDan~~~~~~~A~~~~~~l~~~ 215 (368)
T cd03329 142 ESPEAYADFAEECKALGYRAIKLHPWGPGVVRRDLKACLAVREA---VGPDMRLMHDGAHWYSRADALRLGRALEEL 215 (368)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCchhHHHHHHHHHHHHHH---hCCCCeEEEECCCCcCHHHHHHHHHHhhhc
Confidence 377889999999999999999997521 4577888888874 3678999999974 556666666666553
No 163
>PF03599 CdhD: CO dehydrogenase/acetyl-CoA synthase delta subunit; InterPro: IPR016041 This entry represents a conserved region predicted to form a TIM alpha/beta barrel, and is found in the delta subunit of a number of CO dehydrogenase/acetyl-CoA synthase enzymes.; PDB: 2H9A_B 2YCL_B 4DJF_E 4DJD_C 4DJE_C.
Probab=76.87 E-value=17 Score=40.49 Aligned_cols=154 Identities=15% Similarity=0.183 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHH----------cCCCEEEEe--cCC--HHHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhhc
Q 006566 117 VAGTVEEVMRIAD----------QGADLVRIT--VQG--KREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECF 182 (640)
Q Consensus 117 v~atv~Qi~rl~~----------aGceiVRvt--vp~--~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~v 182 (640)
+++-++.++.+.. .|+|+|-|- ..+ .+-|+..+.+.+ .+++|||=--- ||.+..+|++.+
T Consensus 45 ~~~~~~~~~~v~~dwak~rVge~~~~D~Ialr~~S~DPae~fa~~vk~V~~-----a~~~PLIL~~~-D~evl~aale~~ 118 (386)
T PF03599_consen 45 IEAKVERIKDVQFDWAKKRVGEFLGADMIALRLESGDPAEEFAKAVKKVAE-----AVDVPLILCGC-DPEVLKAALEAC 118 (386)
T ss_dssp HHHHHHHHTTTCCEHHHHCCCEEEE-SEEEEE-GGGSTHHHHHHHHHHHHH-----C-SSEEEEESS-HHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhhhhhhhhhhhhccccEEEEEecCCChHHHHHHHHHHHHH-----hcCCCEEEEeC-CHHHHHHHHHHh
Confidence 4567777776554 478887655 444 344555555555 48899886432 999999999986
Q ss_pred Ccee--eCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCCChHHHHH
Q 006566 183 DKIR--VNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVE 260 (640)
Q Consensus 183 ~KVR--INPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGdtp~gMVe 260 (640)
..=| |.+=|= +.++++.+.||++|.|+ ++-+ +.+ ++
T Consensus 119 ~~~kpLL~aAt~-------------------------eNyk~m~~lA~~y~~pl--~v~s-p~D--------------ln 156 (386)
T PF03599_consen 119 AGKKPLLYAATE-------------------------ENYKAMAALAKEYGHPL--IVSS-PID--------------LN 156 (386)
T ss_dssp TTS--EEEEEBT-------------------------TTHHHHHHHHHHCT-EE--EEE--SSC--------------HH
T ss_pred CcCCcEEeEcCH-------------------------HHHHHHHHHHHHcCCeE--EEEe-ccc--------------HH
Confidence 5333 443222 13677899999999997 6622 221 34
Q ss_pred HHHHHHHHHHHCCCCcEEEEEEeCC----hhhH---HHHHHHHHHHHHHcCCCcceEEEeecCCCC
Q 006566 261 SAFEFARICRKLDFHNFLFSMKASN----PVVM---VQAYRLLVAEMYVHGWDYPLHLGVTEAGEG 319 (640)
Q Consensus 261 SAle~~~i~e~~~F~diviSmKsSn----~~~m---V~AyRlL~~~m~~~g~dyPLHLGVTEAG~g 319 (640)
.+-+..+.+.++|++|||+--=+.. ...+ ...-|+.+=+ .-+-+.||.--..+||...
T Consensus 157 ~lk~Ln~~l~~~Gv~dIVlDpgt~~lGyGie~t~s~~~rIRraALk-~Dr~lgyPiI~~~~~aw~~ 221 (386)
T PF03599_consen 157 LLKQLNIKLTELGVKDIVLDPGTRALGYGIEYTYSNMERIRRAALK-GDRPLGYPIITFPTEAWKA 221 (386)
T ss_dssp HHHHHHHHHHTTT-GGEEEE---SSTTTTHHHHHHHHHHHHHHHHH-T-GGG-S-BEECHHHCTCC
T ss_pred HHHHHHHHHHhcCcccEEecCCcccchhHHHHHHHHHHHHHHHHhc-cCcccCCceeecchhccch
Confidence 5667788899999999999865554 3211 2223433311 1344569986445777543
No 164
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=76.60 E-value=18 Score=39.83 Aligned_cols=100 Identities=17% Similarity=0.307 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHcCCCEEEEecC---CHHHHHHHHHHHHHhhcCCCC-cceeeccCCCHHHHHHHhhh-cCcee--eCCCC
Q 006566 119 GTVEEVMRIADQGADLVRITVQ---GKREADACFEIKNSLVQKNYN-IPLVADIHFAPSVALRVAEC-FDKIR--VNPGN 191 (640)
Q Consensus 119 atv~Qi~rl~~aGceiVRvtvp---~~~~A~~l~~I~~~L~~~g~~-iPLVADIHF~~~~Al~Aa~~-v~KVR--INPGN 191 (640)
...+.+..|.+||+|++=|-+. +..-.+.+++||+. ++ +|+||====++..|+.-+++ +|.|| |-||-
T Consensus 108 ~~~er~~~L~~agvD~ivID~a~g~s~~~~~~ik~ik~~-----~~~~~viaGNV~T~e~a~~L~~aGad~vkVGiGpGs 182 (352)
T PF00478_consen 108 DDFERAEALVEAGVDVIVIDSAHGHSEHVIDMIKKIKKK-----FPDVPVIAGNVVTYEGAKDLIDAGADAVKVGIGPGS 182 (352)
T ss_dssp CHHHHHHHHHHTT-SEEEEE-SSTTSHHHHHHHHHHHHH-----STTSEEEEEEE-SHHHHHHHHHTT-SEEEESSSSST
T ss_pred HHHHHHHHHHHcCCCEEEccccCccHHHHHHHHHHHHHh-----CCCceEEecccCCHHHHHHHHHcCCCEEEEeccCCc
Confidence 3478888899999999988544 44556677777765 54 99999888889999998999 99999 66887
Q ss_pred CCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeE
Q 006566 192 FADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAV 234 (640)
Q Consensus 192 ~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aI 234 (640)
+--.+.. .-.-| .--..+.++.+.|++++++|
T Consensus 183 iCtTr~v-~GvG~----------PQ~tAv~~~a~~a~~~~v~i 214 (352)
T PF00478_consen 183 ICTTREV-TGVGV----------PQLTAVYECAEAARDYGVPI 214 (352)
T ss_dssp TBHHHHH-HSBSC----------THHHHHHHHHHHHHCTTSEE
T ss_pred ccccccc-cccCC----------cHHHHHHHHHHHhhhccCce
Confidence 6432210 00000 00124667788888999998
No 165
>PRK01060 endonuclease IV; Provisional
Probab=76.51 E-value=93 Score=31.70 Aligned_cols=127 Identities=13% Similarity=0.098 Sum_probs=70.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCH-------HHHHHHHHHHHHhhcCCCCcc-eeeccCCCHHHHHHHhhhcCcee
Q 006566 115 KDVAGTVEEVMRIADQGADLVRITVQGK-------READACFEIKNSLVQKNYNIP-LVADIHFAPSVALRVAECFDKIR 186 (640)
Q Consensus 115 ~Dv~atv~Qi~rl~~aGceiVRvtvp~~-------~~A~~l~~I~~~L~~~g~~iP-LVADIHF~~~~Al~Aa~~v~KVR 186 (640)
.|++. -+..+.++|.|-|=+.+.+. -..+.+.++|+.+.+.|..+. ++. |-.+
T Consensus 12 ~~~~~---~l~~~~~~G~d~vEl~~~~p~~~~~~~~~~~~~~~lk~~~~~~gl~~~~~~~--h~~~-------------- 72 (281)
T PRK01060 12 GGLEG---AVAEAAEIGANAFMIFTGNPQQWKRKPLEELNIEAFKAACEKYGISPEDILV--HAPY-------------- 72 (281)
T ss_pred CCHHH---HHHHHHHcCCCEEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCCCCceEE--ecce--------------
Confidence 34554 44667788999997765322 244457778888878787753 432 3211
Q ss_pred eCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCCChHHHHHHHHHHH
Q 006566 187 VNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFA 266 (640)
Q Consensus 187 INPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGdtp~gMVeSAle~~ 266 (640)
+.|+++... +..++-.+.++..++.|++.|.+ .|.+..|.-.. +.+.+...+...|.+
T Consensus 73 --~~nl~~~d~-------------~~r~~s~~~~~~~i~~A~~lga~-~vv~h~G~~~~------~~~~~~~~~~~~e~l 130 (281)
T PRK01060 73 --LINLGNPNK-------------EILEKSRDFLIQEIERCAALGAK-LLVFHPGSHLG------DIDEEDCLARIAESL 130 (281)
T ss_pred --EecCCCCCH-------------HHHHHHHHHHHHHHHHHHHcCCC-EEEEcCCcCCC------CCcHHHHHHHHHHHH
Confidence 244444321 12334445677889999999998 46666665311 112222344444444
Q ss_pred HHHHHCCCCcEEEEEEe
Q 006566 267 RICRKLDFHNFLFSMKA 283 (640)
Q Consensus 267 ~i~e~~~F~diviSmKs 283 (640)
+.+-+... .+.|.+-.
T Consensus 131 ~~l~~~~~-gv~l~iEn 146 (281)
T PRK01060 131 NEALDKTQ-GVTIVLEN 146 (281)
T ss_pred HHHHhcCC-CCEEEEec
Confidence 43322222 46677654
No 166
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=76.22 E-value=22 Score=39.37 Aligned_cols=77 Identities=17% Similarity=0.226 Sum_probs=53.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecC--CH-------HHHHHHHHHHHHhhcCCCC-cceeeccCCC-HHHHHHHhhh--
Q 006566 115 KDVAGTVEEVMRIADQGADLVRITVQ--GK-------READACFEIKNSLVQKNYN-IPLVADIHFA-PSVALRVAEC-- 181 (640)
Q Consensus 115 ~Dv~atv~Qi~rl~~aGceiVRvtvp--~~-------~~A~~l~~I~~~L~~~g~~-iPLVADIHF~-~~~Al~Aa~~-- 181 (640)
-|.+.||+-++.+.+|||.++=|--- .. -+-++++.||+. .+ ||++|----. +.=+..++++
T Consensus 152 ~d~~kTvd~ak~~e~aG~~~ltVHGRtr~~kg~~~~pad~~~i~~v~~~-----~~~ipviaNGnI~~~~d~~~~~~~tG 226 (358)
T KOG2335|consen 152 VDLEKTVDYAKMLEDAGVSLLTVHGRTREQKGLKTGPADWEAIKAVREN-----VPDIPVIANGNILSLEDVERCLKYTG 226 (358)
T ss_pred CcHHHHHHHHHHHHhCCCcEEEEecccHHhcCCCCCCcCHHHHHHHHHh-----CcCCcEEeeCCcCcHHHHHHHHHHhC
Confidence 79999999999999999999866522 22 245778888874 44 8888853322 5555666664
Q ss_pred cCceeeCCCCCCchh
Q 006566 182 FDKIRVNPGNFADRR 196 (640)
Q Consensus 182 v~KVRINPGN~~d~~ 196 (640)
++.|=+-=|++..+.
T Consensus 227 ~dGVM~arglL~NPa 241 (358)
T KOG2335|consen 227 ADGVMSARGLLYNPA 241 (358)
T ss_pred CceEEecchhhcCch
Confidence 666666666666544
No 167
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=76.20 E-value=6.7 Score=43.82 Aligned_cols=67 Identities=19% Similarity=0.278 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHcCCCEEEEec-CC------------HHHHHHHHHHHHHhhcCCCCcceeeccCCC-HHHHHHHhhh-cC
Q 006566 119 GTVEEVMRIADQGADLVRITV-QG------------KREADACFEIKNSLVQKNYNIPLVADIHFA-PSVALRVAEC-FD 183 (640)
Q Consensus 119 atv~Qi~rl~~aGceiVRvtv-p~------------~~~A~~l~~I~~~L~~~g~~iPLVADIHF~-~~~Al~Aa~~-v~ 183 (640)
+|.++.+.+.++|+|.|++-. |+ .-...++..+.+.+. .+++|+|||-.+. |.-+.+|+.. ++
T Consensus 203 ~T~e~a~~l~~aGaD~I~vG~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~--~~~vpVIAdGGI~~~~Di~KALalGA~ 280 (404)
T PRK06843 203 VTKEAALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEVCK--NTNICIIADGGIRFSGDVVKAIAAGAD 280 (404)
T ss_pred CCHHHHHHHHHcCCCEEEECCCCCcCCcceeecCCCCChHHHHHHHHHHHh--hcCCeEEEeCCCCCHHHHHHHHHcCCC
Confidence 577888899999999998752 21 125566666665433 4679999998774 6666677777 77
Q ss_pred ceee
Q 006566 184 KIRV 187 (640)
Q Consensus 184 KVRI 187 (640)
.|=+
T Consensus 281 aVmv 284 (404)
T PRK06843 281 SVMI 284 (404)
T ss_pred EEEE
Confidence 7754
No 168
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=76.09 E-value=25 Score=35.15 Aligned_cols=109 Identities=13% Similarity=0.224 Sum_probs=72.5
Q ss_pred CCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCH-HHHHHHHHHHHHhhcCCCCcceeeccCCC-HHHHH
Q 006566 99 GSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGK-READACFEIKNSLVQKNYNIPLVADIHFA-PSVAL 176 (640)
Q Consensus 99 GG~~PI~VQSMt~t~T~Dv~atv~Qi~rl~~aGceiVRvtvp~~-~~A~~l~~I~~~L~~~g~~iPLVADIHF~-~~~Al 176 (640)
|.+-.+++=- | ..-|.+.+++=+++|.+.+.+.+= =|=. .+-+.++.+++ .+++|+.+|=++. +.-..
T Consensus 92 g~~~~l~lDa--N-~~~~~~~a~~~~~~l~~~~i~~iE--eP~~~~d~~~~~~L~~-----~~~~pIa~dEs~~~~~~~~ 161 (229)
T cd00308 92 GPDARLAVDA--N-GAWTPKEAIRLIRALEKYGLAWIE--EPCAPDDLEGYAALRR-----RTGIPIAADESVTTVDDAL 161 (229)
T ss_pred CCCCeEEEEC--C-CCCCHHHHHHHHHHhhhcCCCeEE--CCCCccCHHHHHHHHh-----hCCCCEEeCCCCCCHHHHH
Confidence 4455555432 1 234566677777777776665553 2222 23566777776 4889999998765 43333
Q ss_pred HHhh--hcCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeC
Q 006566 177 RVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTN 239 (640)
Q Consensus 177 ~Aa~--~v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvN 239 (640)
.+++ .++-+.|-|...|.-.+ ..++.+.|+++|+++=+|..
T Consensus 162 ~~~~~~~~d~~~~k~~~~GGi~~----------------------~~~i~~~a~~~gi~~~~~~~ 204 (229)
T cd00308 162 EALELGAVDILQIKPTRVGGLTE----------------------SRRAADLAEAFGIRVMVHGT 204 (229)
T ss_pred HHHHcCCCCEEecCccccCCHHH----------------------HHHHHHHHHHcCCEEeecCC
Confidence 4444 48999999999987432 67889999999999977653
No 169
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=75.77 E-value=97 Score=34.66 Aligned_cols=64 Identities=22% Similarity=0.359 Sum_probs=32.0
Q ss_pred HHHHHHHcCCe-EEEeeCCCCCcHhHHHHhC-C-ChHHHHHHHHHHHHHHHHCCCC---cEEEEEEeCChhhHHHH
Q 006566 223 LVEKCKKYGRA-VRIGTNHGSLSDRIMSYYG-D-SPRGMVESAFEFARICRKLDFH---NFLFSMKASNPVVMVQA 292 (640)
Q Consensus 223 lV~~~Ke~g~a-IRIGvNhGSLs~ril~ryG-d-tp~gMVeSAle~~~i~e~~~F~---diviSmKsSn~~~mV~A 292 (640)
+++..|+.|+- |=||+ =|.|++++++++ . + ++...+.++.|++.|+. ++++-+=.-+...+.+.
T Consensus 289 ~l~~l~~aG~~~v~iGi--ES~s~~~L~~~~K~~~----~~~~~~~i~~~~~~Gi~v~~~~IiGlPget~e~~~~t 358 (472)
T TIGR03471 289 TLKVMKENGLRLLLVGY--ESGDQQILKNIKKGLT----VEIARRFTRDCHKLGIKVHGTFILGLPGETRETIRKT 358 (472)
T ss_pred HHHHHHHcCCCEEEEcC--CCCCHHHHHHhcCCCC----HHHHHHHHHHHHHCCCeEEEEEEEeCCCCCHHHHHHH
Confidence 44555555542 33444 344566666665 1 2 23455566666777663 34444455443333333
No 170
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=75.76 E-value=17 Score=45.86 Aligned_cols=124 Identities=21% Similarity=0.270 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHcCCCEEEE-ecCCHHHHHHHH-HHHHHhhcCCCCcceeeccCCCH-----------HHHHHHhhh--c
Q 006566 118 AGTVEEVMRIADQGADLVRI-TVQGKREADACF-EIKNSLVQKNYNIPLVADIHFAP-----------SVALRVAEC--F 182 (640)
Q Consensus 118 ~atv~Qi~rl~~aGceiVRv-tvp~~~~A~~l~-~I~~~L~~~g~~iPLVADIHF~~-----------~~Al~Aa~~--v 182 (640)
+.=-+|+..|.++|+|++=+ |.|+..+|++.- .+++-+.+.+.++|++.=..|.. ..+..+++. +
T Consensus 164 ~~y~eQi~~L~e~GVDllliETi~d~~EakAal~a~~~~~~~~~~~lPv~vS~T~~d~~Gr~lsG~~~ea~~~~l~~~~~ 243 (1229)
T PRK09490 164 AAYREQTRGLIEGGADLILIETIFDTLNAKAAIFAVEEVFEELGVRLPVMISGTITDASGRTLSGQTTEAFWNSLRHAKP 243 (1229)
T ss_pred HHHHHHHHHHHhCCCCEEEEeeeCCHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEECCCCccCCCCcHHHHHHHHhcCCC
Confidence 44567899999999999999 799999998655 44554556788999998777721 233333332 4
Q ss_pred CceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHc-CCeEEEeeCCCCCcHhHHHHhCCChHHHHHH
Q 006566 183 DKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKY-GRAVRIGTNHGSLSDRIMSYYGDSPRGMVES 261 (640)
Q Consensus 183 ~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~-g~aIRIGvNhGSLs~ril~ryGdtp~gMVeS 261 (640)
+.|=+|=+- ..+ .+.++++...+. +++|=+=-|.| |+. ....|-.+|+.|.+.
T Consensus 244 ~avGlNCs~--GP~----------------------~m~~~l~~l~~~~~~pi~vyPNAG-lP~-~~~~yd~tPe~~a~~ 297 (1229)
T PRK09490 244 LSIGLNCAL--GAD----------------------ELRPYVEELSRIADTYVSAHPNAG-LPN-AFGEYDETPEEMAAQ 297 (1229)
T ss_pred CEEEEcCCC--cHH----------------------HHHHHHHHHHHhcCCeEEEEeCCC-CCC-CCCCCCCCHHHHHHH
Confidence 445555331 111 145555554433 56776667888 443 344676799999988
Q ss_pred HHHHHH
Q 006566 262 AFEFAR 267 (640)
Q Consensus 262 Ale~~~ 267 (640)
+.+|++
T Consensus 298 ~~~~~~ 303 (1229)
T PRK09490 298 IGEFAE 303 (1229)
T ss_pred HHHHHH
Confidence 887753
No 171
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=75.73 E-value=76 Score=36.16 Aligned_cols=125 Identities=22% Similarity=0.256 Sum_probs=88.6
Q ss_pred cCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEe----cCC-HHHHHHHHHHHHHhhcCCCCcceeeccCCCH
Q 006566 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRIT----VQG-KREADACFEIKNSLVQKNYNIPLVADIHFAP 172 (640)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~rl~~aGceiVRvt----vp~-~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~ 172 (640)
.|+ |-...=|||+++-++++.=|+..++|+++|||-|=|- .-+ .+.-+-++.||+. +++|+----|-..
T Consensus 137 ~G~-h~q~~i~YT~sPvHt~e~yv~~akel~~~g~DSIciKDmaGlltP~~ayelVk~iK~~-----~~~pv~lHtH~Ts 210 (472)
T COG5016 137 HGA-HVQGTISYTTSPVHTLEYYVELAKELLEMGVDSICIKDMAGLLTPYEAYELVKAIKKE-----LPVPVELHTHATS 210 (472)
T ss_pred cCc-eeEEEEEeccCCcccHHHHHHHHHHHHHcCCCEEEeecccccCChHHHHHHHHHHHHh-----cCCeeEEeccccc
Confidence 455 7778889999999999999999999999999998775 122 2455677888885 8899998888876
Q ss_pred HHH----HHHhhh-cCcee--eCCCCCCchhhhccc-------cccchHHHHHHHhhhHhhHHHHHHHHH
Q 006566 173 SVA----LRVAEC-FDKIR--VNPGNFADRRAQFEQ-------LEYTDDEYQKELQHIEEVFSPLVEKCK 228 (640)
Q Consensus 173 ~~A----l~Aa~~-v~KVR--INPGN~~d~~k~F~~-------~eYtdeeY~~Ele~I~~~f~~lV~~~K 228 (640)
-+| ++|+|+ +|-|= |-|=..|-..-..+. ..|..-==.++++.|.+-|+++-++-+
T Consensus 211 G~a~m~ylkAvEAGvD~iDTAisp~S~gtsqP~tEtmv~aL~gt~yDtgld~~~l~~~~~yf~~vrkkY~ 280 (472)
T COG5016 211 GMAEMTYLKAVEAGVDGIDTAISPLSGGTSQPATETMVAALRGTGYDTGLDLELLEEIAEYFREVRKKYK 280 (472)
T ss_pred chHHHHHHHHHHhCcchhhhhhccccCCCCCCcHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHHHh
Confidence 655 477788 88776 777555543332333 333322234566777787876655554
No 172
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=75.63 E-value=5.3 Score=43.86 Aligned_cols=66 Identities=24% Similarity=0.448 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHcCCCEEEEecC-------------CHHHHHHHHHHHHHhhcCCCCcceeec--cCCCHHHHHHHhhh-c
Q 006566 119 GTVEEVMRIADQGADLVRITVQ-------------GKREADACFEIKNSLVQKNYNIPLVAD--IHFAPSVALRVAEC-F 182 (640)
Q Consensus 119 atv~Qi~rl~~aGceiVRvtvp-------------~~~~A~~l~~I~~~L~~~g~~iPLVAD--IHF~~~~Al~Aa~~-v 182 (640)
+|-++.+.|.++|+|.|||-+= +.-.+-++.+..+..+ .+.+|+||| |++.-.++ +|+-+ +
T Consensus 158 ~T~e~a~~L~~aGad~vkVGiGpGsiCtTr~v~GvG~PQ~tAv~~~a~~a~--~~~v~iIADGGi~~sGDi~-KAla~GA 234 (352)
T PF00478_consen 158 VTYEGAKDLIDAGADAVKVGIGPGSICTTREVTGVGVPQLTAVYECAEAAR--DYGVPIIADGGIRTSGDIV-KALAAGA 234 (352)
T ss_dssp -SHHHHHHHHHTT-SEEEESSSSSTTBHHHHHHSBSCTHHHHHHHHHHHHH--CTTSEEEEESS-SSHHHHH-HHHHTT-
T ss_pred CCHHHHHHHHHcCCCEEEEeccCCcccccccccccCCcHHHHHHHHHHHhh--hccCceeecCCcCccccee-eeeeecc
Confidence 5778899999999999999621 1224445555544322 468999999 77777776 44444 6
Q ss_pred Cceee
Q 006566 183 DKIRV 187 (640)
Q Consensus 183 ~KVRI 187 (640)
|.|=+
T Consensus 235 d~VMl 239 (352)
T PF00478_consen 235 DAVML 239 (352)
T ss_dssp SEEEE
T ss_pred cceee
Confidence 65544
No 173
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=75.43 E-value=75 Score=35.64 Aligned_cols=143 Identities=15% Similarity=0.133 Sum_probs=89.6
Q ss_pred CHHHHHHHHHHHHHcC----CCEEEEe----cCCHHHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhhcCceee
Q 006566 116 DVAGTVEEVMRIADQG----ADLVRIT----VQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRV 187 (640)
Q Consensus 116 Dv~atv~Qi~rl~~aG----ceiVRvt----vp~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~v~KVRI 187 (640)
=+++-++||+...+.. ..+=.|- +|+.=.++.|..|-+.+++. .|+--|. ++ -+-.
T Consensus 93 Y~~~L~~Ei~~~~~~~~~~~~~i~~iy~GGGTPs~L~~~~l~~ll~~i~~~---~~l~~~~-----------ei--tiE~ 156 (449)
T PRK09058 93 YTDALIRELAMEADSPLTQSAPIHAVYFGGGTPTALSAEDLARLITALREY---LPLAPDC-----------EI--TLEG 156 (449)
T ss_pred HHHHHHHHHHHHhhccccCCCeeeEEEECCCccccCCHHHHHHHHHHHHHh---CCCCCCC-----------EE--EEEe
Confidence 4577788888776531 2233332 66765566666666654432 3432221 22 1336
Q ss_pred CCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCC--ChHHHHHHHHHH
Q 006566 188 NPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGD--SPRGMVESAFEF 265 (640)
Q Consensus 188 NPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGd--tp~gMVeSAle~ 265 (640)
||.++-+ + .++.+|+.|+- ||-+--=|++++++.+.|- +. +.+++.
T Consensus 157 ~p~~~t~-e--------------------------~l~~l~~aGvn-RiSiGVQSf~d~vLk~lgR~~~~----~~~~~~ 204 (449)
T PRK09058 157 RINGFDD-E--------------------------KADAALDAGAN-RFSIGVQSFNTQVRRRAGRKDDR----EEVLAR 204 (449)
T ss_pred CcCcCCH-H--------------------------HHHHHHHcCCC-EEEecCCcCCHHHHHHhCCCCCH----HHHHHH
Confidence 8988733 2 35777888854 5555457888999999983 43 566677
Q ss_pred HHHHHHCCCCcEEEEEEeCChhhHHHHHHHHHHHHHHcCCC
Q 006566 266 ARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWD 306 (640)
Q Consensus 266 ~~i~e~~~F~diviSmKsSn~~~mV~AyRlL~~~m~~~g~d 306 (640)
++.+++.||.+|.+.+=--=|-.+.+.++.-.+...+.+.+
T Consensus 205 i~~l~~~g~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~~~ 245 (449)
T PRK09058 205 LEELVARDRAAVVCDLIFGLPGQTPEIWQQDLAIVRDLGLD 245 (449)
T ss_pred HHHHHhCCCCcEEEEEEeeCCCCCHHHHHHHHHHHHhcCCC
Confidence 88888999998888876655556677777666665555543
No 174
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=75.03 E-value=23 Score=37.64 Aligned_cols=152 Identities=20% Similarity=0.268 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhhcCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHH
Q 006566 142 KREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFS 221 (640)
Q Consensus 142 ~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~ 221 (640)
.+--+-|.++|++ +.+|+|.|||=...+ ..+++++|=+-|--=|.-. .
T Consensus 59 eeGL~iL~~vk~~-----~glpvvTeV~~~~~~-~~vae~vDilQIgArn~rn--------------------------~ 106 (258)
T TIGR01362 59 EEGLKILQKVKEE-----FGVPILTDVHESSQC-EPVAEVVDIIQIPAFLCRQ--------------------------T 106 (258)
T ss_pred HHHHHHHHHHHHH-----hCCceEEEeCCHHHH-HHHHhhCcEEEeCchhcch--------------------------H
Confidence 4677888999986 999999999965554 4666889999996655533 2
Q ss_pred HHHHHHHHcCCeEEEeeCCCCCcHhHHHHhC--CChHHHHHHHHHHHHHHHHCCCCcEEEEEEeCChh--hHHHHHHHHH
Q 006566 222 PLVEKCKKYGRAVRIGTNHGSLSDRIMSYYG--DSPRGMVESAFEFARICRKLDFHNFLFSMKASNPV--VMVQAYRLLV 297 (640)
Q Consensus 222 ~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryG--dtp~gMVeSAle~~~i~e~~~F~diviSmKsSn~~--~mV~AyRlL~ 297 (640)
+|++.+.+.|.|+ +=|| | -||+.|.-+|. .+...|=+||++-=--+... ..+--+|-+
T Consensus 107 ~LL~a~g~t~kpV--------~lKr-----G~~~t~~e~l~aae----yi~~~Gn~~viLcERG~tf~y~r~~~D~~~i- 168 (258)
T TIGR01362 107 DLLVAAAKTGRIV--------NVKK-----GQFLSPWDMKNVVE----KVLSTGNKNILLCERGTSFGYNNLVVDMRSL- 168 (258)
T ss_pred HHHHHHhccCCeE--------EecC-----CCcCCHHHHHHHHH----HHHHcCCCcEEEEeCCCCcCCCCcccchhhh-
Confidence 6888888899998 3333 5 58988776654 34556666766543332100 001111211
Q ss_pred HHHHHcCCCcceEEEeecC-----------CCCCc---ceeehHHHHHHHhhhcCCcEEEeecCCCCch
Q 006566 298 AEMYVHGWDYPLHLGVTEA-----------GEGED---GRMKSAIGIGTLLQDGLGDTIRVSLTEPPEK 352 (640)
Q Consensus 298 ~~m~~~g~dyPLHLGVTEA-----------G~ged---GrIKSAiGIG~LL~DGIGDTIRVSLTedP~~ 352 (640)
..|.+. .||+-.=.|-+ |.-.+ -.-++|+..|+ |++.+-.-.||.+
T Consensus 169 p~~k~~--~~PVi~DpSHsvq~pg~~g~~s~G~r~~v~~la~AAvA~Ga-------DGl~iEvHpdP~~ 228 (258)
T TIGR01362 169 PIMREL--GCPVIFDATHSVQQPGGLGGASGGLREFVPTLARAAVAVGI-------DGLFMETHPDPKN 228 (258)
T ss_pred HHHHhc--CCCEEEeCCccccCCCCCCCCCCCcHHHHHHHHHHHHHhCC-------CEEEEEeCCCccc
Confidence 233333 68998888886 21111 23355666654 8888887778875
No 175
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=74.99 E-value=33 Score=37.06 Aligned_cols=172 Identities=21% Similarity=0.259 Sum_probs=103.6
Q ss_pred HHHHHHHHH-HHcCCCEEEEecCC---------------HHHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhhc
Q 006566 119 GTVEEVMRI-ADQGADLVRITVQG---------------KREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECF 182 (640)
Q Consensus 119 atv~Qi~rl-~~aGceiVRvtvp~---------------~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~v 182 (640)
.+.++++++ .++|+.++|=+.=+ .+--+-|.++|++ +.+|+|.|||=...+. .+++++
T Consensus 34 ~~A~~lk~~~~~~g~~~i~kgsfkKApRTSp~sFrG~G~eeGL~iL~~vk~~-----~glpvvTeV~~~~q~~-~vae~~ 107 (290)
T PLN03033 34 RMAKHIKDISTKLGLPLVFKSSFDKANRTSSKSFRGPGMAEGLKILEKVKVA-----YDLPIVTDVHESSQCE-AVGKVA 107 (290)
T ss_pred HHHHHHHHHHHhCCCcEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHH-----HCCceEEeeCCHHHHH-HHHhhC
Confidence 334444443 23599999976543 4667888899986 9999999999655554 666889
Q ss_pred CceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhC--CChHHHHH
Q 006566 183 DKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYG--DSPRGMVE 260 (640)
Q Consensus 183 ~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryG--dtp~gMVe 260 (640)
|=+-|--=|.- =..|+++|.+.|.|+ +=|| | .+|+.|.-
T Consensus 108 DilQIgAr~~r--------------------------qtdLL~a~~~tgkpV--------~lKk-----Gq~~t~~e~~~ 148 (290)
T PLN03033 108 DIIQIPAFLCR--------------------------QTDLLVAAAKTGKII--------NIKK-----GQFCAPSVMRN 148 (290)
T ss_pred cEEeeCcHHHH--------------------------HHHHHHHHHccCCeE--------EeCC-----CCCCCHHHHHH
Confidence 99988554441 245788888889988 2233 5 58888877
Q ss_pred HHHHHHHHHHHCCCCcEEEEEE-----eCChhhHHHHHHHHHHHHHHcCCCcceEEEeecC-----------C----CCC
Q 006566 261 SAFEFARICRKLDFHNFLFSMK-----ASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEA-----------G----EGE 320 (640)
Q Consensus 261 SAle~~~i~e~~~F~diviSmK-----sSn~~~mV~AyRlL~~~m~~~g~dyPLHLGVTEA-----------G----~ge 320 (640)
+|... ...|=++|++-=- ..|-.+-+ |-+. .|.+ ..||+-+=.|-+ + .|.
T Consensus 149 aaeki----~~~GN~~viLcERG~tFgy~~lv~D~---r~ip-~mk~--~~lPVI~DpSHsvQ~pg~~~~~~~g~~s~G~ 218 (290)
T PLN03033 149 SAEKV----RLAGNPNVMVCERGTMFGYNDLIVDP---RNLE-WMRE--ANCPVVADITHSLQQPAGKKLDGGGVASGGL 218 (290)
T ss_pred HHHHH----HHcCCCcEEEEeCCCCcCCCCcccch---hhhH-HHHh--cCCCEEEeCCccccCCCcccccccCCCCCCC
Confidence 66432 3444445444221 11111111 1111 1221 678998888875 1 111
Q ss_pred c----ceeehHHHHHHHhhhcCCcEEEeecCCCCch
Q 006566 321 D----GRMKSAIGIGTLLQDGLGDTIRVSLTEPPEK 352 (640)
Q Consensus 321 d----GrIKSAiGIG~LL~DGIGDTIRVSLTedP~~ 352 (640)
. -.-+.|+..|. |++.+-.-.||++
T Consensus 219 Re~V~~larAAvA~Ga-------DGlfiEvHpdP~~ 247 (290)
T PLN03033 219 RELIPCIARTAVAVGV-------DGIFMEVHDDPLS 247 (290)
T ss_pred HHHHHHHHHHHHHhCC-------CEEEEEecCCccc
Confidence 1 12345555553 7888877777764
No 176
>cd00430 PLPDE_III_AR Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase. This family includes predominantly bacterial alanine racemases (AR), some serine racemases (SerRac), and putative bifunctional enzymes containing N-terminal UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase (murF) and C-terminal AR domains. These proteins are fold type III PLP-dependent enzymes that play essential roles in peptidoglycan biosynthesis. AR catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. SerRac converts L-serine into its D-enantiomer (D-serine) for peptidoglycan synthesis. murF catalyzes the addition of D-Ala-D-Ala to UDPMurNAc-tripeptide, the final step in the synthesis of the cytoplasmic precursor of bacterial cell wall peptidoglycan. Members of this family contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with activ
Probab=74.93 E-value=45 Score=35.72 Aligned_cols=22 Identities=27% Similarity=0.243 Sum_probs=17.2
Q ss_pred HHHHcCCCEEEEecCCHHHHHHHH
Q 006566 126 RIADQGADLVRITVQGKREADACF 149 (640)
Q Consensus 126 rl~~aGceiVRvtvp~~~~A~~l~ 149 (640)
.+.++||+ .+.|.+..||..+.
T Consensus 47 ~l~~~G~~--~~~vas~~Ea~~~~ 68 (367)
T cd00430 47 ALEEAGAD--YFAVATLEEALELR 68 (367)
T ss_pred HHHHCCCC--EEEECcHHHHHHHH
Confidence 46788987 68888999988654
No 177
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=74.62 E-value=19 Score=40.74 Aligned_cols=67 Identities=21% Similarity=0.300 Sum_probs=50.9
Q ss_pred HHHHHHHHHHcCCCEEEEecCCH---HHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhh-cCceee--CCC
Q 006566 120 TVEEVMRIADQGADLVRITVQGK---READACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRV--NPG 190 (640)
Q Consensus 120 tv~Qi~rl~~aGceiVRvtvp~~---~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~-v~KVRI--NPG 190 (640)
+.+.+..|.++|++++-+.+..- .-.+.++.|+++ .-++|+++=-=.++.-|..++++ ++-|++ -||
T Consensus 229 ~~e~a~~L~~agvdvivvD~a~g~~~~vl~~i~~i~~~----~p~~~vi~g~v~t~e~a~~l~~aGad~i~vg~g~g 301 (486)
T PRK05567 229 NEERAEALVEAGVDVLVVDTAHGHSEGVLDRVREIKAK----YPDVQIIAGNVATAEAARALIEAGADAVKVGIGPG 301 (486)
T ss_pred hHHHHHHHHHhCCCEEEEECCCCcchhHHHHHHHHHhh----CCCCCEEEeccCCHHHHHHHHHcCCCEEEECCCCC
Confidence 48999999999999997776532 344556666664 33799887556789999999999 999985 465
No 178
>PRK05826 pyruvate kinase; Provisional
Probab=74.27 E-value=76 Score=36.29 Aligned_cols=155 Identities=17% Similarity=0.205 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCC-CcceeeccCCCHHHHHHHhh----hcCceeeCCCC
Q 006566 117 VAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNY-NIPLVADIHFAPSVALRVAE----CFDKIRVNPGN 191 (640)
Q Consensus 117 v~atv~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~-~iPLVADIHF~~~~Al~Aa~----~v~KVRINPGN 191 (640)
++.-.+.|++..+.|++.|=+ |-.+.|+.++++++-|.+.|. ++.++|=|- -+-|++.++ .+|.|=|-||.
T Consensus 172 te~D~~~i~~ald~g~d~I~~--sfV~saedv~~l~~~l~~~~~~~~~iiakIE--t~eav~nldeI~~~~DgImIgrgD 247 (465)
T PRK05826 172 TEKDKADIKFAAEQGVDYIAV--SFVRSAEDVEEARRLLREAGCPHAKIIAKIE--RAEAVDNIDEIIEASDGIMVARGD 247 (465)
T ss_pred ChhhHHHHHHHHHCCCCEEEE--CCCCCHHHHHHHHHHHHHcCCcCceEEEEEc--CHHHHHhHHHHHHHcCEEEECcch
Confidence 466667788899999999755 444455555555666667777 899999883 222443332 38999999999
Q ss_pred CCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhC--CChHHHHHHHHHHHHHH
Q 006566 192 FADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYG--DSPRGMVESAFEFARIC 269 (640)
Q Consensus 192 ~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryG--dtp~gMVeSAle~~~i~ 269 (640)
++-.- . .+++.+..+.++++|+++|.|+=+-| .+|+--= ..| +=-|-.++.
T Consensus 248 Lg~el--------g-------~~~v~~~qk~Ii~~c~~~gKpvi~AT-------qmLeSM~~~p~P-----TRAEvsDVa 300 (465)
T PRK05826 248 LGVEI--------P-------DEEVPGLQKKIIRKAREAGKPVITAT-------QMLESMIENPRP-----TRAEVSDVA 300 (465)
T ss_pred hhhhc--------C-------cHhHHHHHHHHHHHHHHcCCCEEEEC-------HHHHHHhhCCCC-----chhhhhhHH
Confidence 98622 1 23445555789999999999984333 2222211 111 001233333
Q ss_pred --HHCCCCcEEEEE---EeCChhhHHHHHHHHHHHHHH
Q 006566 270 --RKLDFHNFLFSM---KASNPVVMVQAYRLLVAEMYV 302 (640)
Q Consensus 270 --e~~~F~diviSm---KsSn~~~mV~AyRlL~~~m~~ 302 (640)
-..|.+-+.+|- +-..|...|+..+.++++.++
T Consensus 301 nav~dG~D~vmLS~ETA~G~yPveaV~~m~~I~~~aE~ 338 (465)
T PRK05826 301 NAVLDGTDAVMLSGETAAGKYPVEAVEAMARICKGAEK 338 (465)
T ss_pred HHHHcCCcEEEeccccccCcCHHHHHHHHHHHHHHHHh
Confidence 345889999984 446677888888888887654
No 179
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=74.10 E-value=37 Score=34.14 Aligned_cols=79 Identities=19% Similarity=0.233 Sum_probs=53.1
Q ss_pred ceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHH-------------HHHHHHHHHHHhhcCCCCcceee-cc
Q 006566 103 PIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKR-------------EADACFEIKNSLVQKNYNIPLVA-DI 168 (640)
Q Consensus 103 PI~VQSMt~t~T~Dv~atv~Qi~rl~~aGceiVRvtvp~~~-------------~A~~l~~I~~~L~~~g~~iPLVA-DI 168 (640)
+++++.|++.. .+.+.++.++|.+.||+..+..+ .-+......+.+++.|+.+=+.. |+
T Consensus 66 ~~~~~~l~~~~-------~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~ 138 (265)
T cd03174 66 NVKLQALVRNR-------EKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDA 138 (265)
T ss_pred CcEEEEEccCc-------hhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEee
Confidence 46777777654 66788999999999999988762 33444444445677788755554 66
Q ss_pred C---CC----HHHHHHHhhh-cCceeeC
Q 006566 169 H---FA----PSVALRVAEC-FDKIRVN 188 (640)
Q Consensus 169 H---F~----~~~Al~Aa~~-v~KVRIN 188 (640)
. .+ .+++..+.++ ++-|++-
T Consensus 139 ~~~~~~~~~l~~~~~~~~~~g~~~i~l~ 166 (265)
T cd03174 139 FGCKTDPEYVLEVAKALEEAGADEISLK 166 (265)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCCEEEec
Confidence 5 34 3455556666 7777754
No 180
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=73.93 E-value=8.5 Score=43.07 Aligned_cols=66 Identities=21% Similarity=0.367 Sum_probs=44.5
Q ss_pred HHHHHHHHHHcCCCEEEEec-CC------------HHHHHHHHHHHHHhhcCCCCcceeeccCCC-HHHHHHHhhh-cCc
Q 006566 120 TVEEVMRIADQGADLVRITV-QG------------KREADACFEIKNSLVQKNYNIPLVADIHFA-PSVALRVAEC-FDK 184 (640)
Q Consensus 120 tv~Qi~rl~~aGceiVRvtv-p~------------~~~A~~l~~I~~~L~~~g~~iPLVADIHF~-~~~Al~Aa~~-v~K 184 (640)
|.++++.|+++|||.|++.+ |+ .-.+.++.++.+.++ .+++|++||-... |.-+.+|+.. ++.
T Consensus 275 t~~~a~~l~~aGad~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~--~~~vpviadGGi~~~~di~kAla~GA~~ 352 (450)
T TIGR01302 275 TAEQAKALIDAGADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAA--QSGIPVIADGGIRYSGDIVKALAAGADA 352 (450)
T ss_pred CHHHHHHHHHhCCCEEEECCCCCcCCccceecCCCccHHHHHHHHHHHHh--hcCCeEEEeCCCCCHHHHHHHHHcCCCE
Confidence 45566678899999999874 32 235567777766544 3679999996544 4445567666 766
Q ss_pred eee
Q 006566 185 IRV 187 (640)
Q Consensus 185 VRI 187 (640)
|=+
T Consensus 353 V~~ 355 (450)
T TIGR01302 353 VML 355 (450)
T ss_pred EEE
Confidence 654
No 181
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=73.91 E-value=34 Score=34.97 Aligned_cols=112 Identities=16% Similarity=0.227 Sum_probs=88.2
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhhcCceeeCCCCCC
Q 006566 114 TKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFA 193 (640)
Q Consensus 114 T~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~v~KVRINPGN~~ 193 (640)
..|.+.+++-++.|.+.|.+++=||..+....++++.++++ .-++-+-||.=.++.-|..|+++=.+.=+-|| +
T Consensus 23 ~~~~~~a~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~~----~p~~~IGAGTVl~~~~a~~a~~aGA~FivsP~-~- 96 (212)
T PRK05718 23 INKLEDAVPLAKALVAGGLPVLEVTLRTPAALEAIRLIAKE----VPEALIGAGTVLNPEQLAQAIEAGAQFIVSPG-L- 96 (212)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHH----CCCCEEEEeeccCHHHHHHHHHcCCCEEECCC-C-
Confidence 46789999999999999999999999998888888888875 22478999999999999999998444556775 2
Q ss_pred chhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCCChHHHHHHHHHHHHHHHHCC
Q 006566 194 DRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLD 273 (640)
Q Consensus 194 d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGdtp~gMVeSAle~~~i~e~~~ 273 (640)
+ .++++.|++++++.==|+ .||.. +.-+.++|
T Consensus 97 ~--------------------------~~vi~~a~~~~i~~iPG~--------------~TptE--------i~~a~~~G 128 (212)
T PRK05718 97 T--------------------------PPLLKAAQEGPIPLIPGV--------------STPSE--------LMLGMELG 128 (212)
T ss_pred C--------------------------HHHHHHHHHcCCCEeCCC--------------CCHHH--------HHHHHHCC
Confidence 2 248999999999882233 46632 44467889
Q ss_pred CCcEEE
Q 006566 274 FHNFLF 279 (640)
Q Consensus 274 F~divi 279 (640)
++-+++
T Consensus 129 a~~vKl 134 (212)
T PRK05718 129 LRTFKF 134 (212)
T ss_pred CCEEEE
Confidence 988887
No 182
>PF00793 DAHP_synth_1: DAHP synthetase I family; InterPro: IPR006218 Members of the 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthetase family catalyse the first step in aromatic amino acid biosynthesis from chorismate. Class I includes bacterial and yeast enzymes; class II includes higher plants and various microorganisms (see IPR002480 from INTERPRO) []. The first step in the common pathway leading to the biosynthesis of aromatic compounds is the stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP). This reaction is catalyzed by DAHP synthase, a metal-activated enzyme, which in microorganisms is the target for negative-feedback regulation by pathway intermediates or by end products. In Escherichia coli there are three DAHP synthetase isoforms, each specifically inhibited by one of the three aromatic amino acids. The crystal structure of the phenylalanine-regulated form of DAHP synthetase shows the fold as is a (beta/alpha)8 barrel with several additional beta strands and alpha helices []. ; GO: 0009058 biosynthetic process; PDB: 3FS2_B 3STF_B 3FYP_D 3QQ1_A 3QPZ_C 3FYO_D 3STC_A 2QKF_D 3STE_C 3QQ0_A ....
Probab=73.54 E-value=19 Score=38.15 Aligned_cols=132 Identities=18% Similarity=0.297 Sum_probs=88.9
Q ss_pred eEEEc-eeecCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCC-----EEEEecC--------------CHHH-HHHH
Q 006566 90 TVMVG-NVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGAD-----LVRITVQ--------------GKRE-ADAC 148 (640)
Q Consensus 90 ~V~VG-~v~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~rl~~aGce-----iVRvtvp--------------~~~~-A~~l 148 (640)
.|+++ +|.+|+++|..|=. --+.-.|.+.+.+=.++|.++|.+ ++|.-+- +.+. -+.+
T Consensus 2 ~v~~~~~i~~G~~~~l~via-GPCsies~e~~~~~A~~l~~~~~~~~~~i~~~~~~~~~KpRts~~~f~G~g~d~~L~~l 80 (270)
T PF00793_consen 2 RVTVKNDILIGKDKRLLVIA-GPCSIESEEQALEYAERLKELGEKLGDRIPLRMRAYFEKPRTSPYSFQGLGLDPGLDIL 80 (270)
T ss_dssp -EEECCTEEETTTSSEEEEE-EESB-S-HHHHHHHHHHHHHHHHHHTTTEEEEEEECSC-TTSSTTST-CSTHHHHHHHH
T ss_pred CccccCCeEecCCCceEEEE-ECCccCCHHHHHHHHHHHHHhhhhcCcceEEEEEEEecCCccCCCCCCCCCCCccchhH
Confidence 37777 89999998733311 223345789999999999999999 6665432 3344 8899
Q ss_pred HHHHHHhhcCCCCcceeeccCCCHHHHHHHhhhcCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHH
Q 006566 149 FEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCK 228 (640)
Q Consensus 149 ~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~K 228 (640)
.+|+++ +.+|++.|+|-...+. .+++.++=+-|-.=|.-+ .++++.|-
T Consensus 81 ~~v~~~-----~glpv~tEv~~~~~~~-~~~d~vd~lqIgAr~~~n--------------------------~~ll~~as 128 (270)
T PF00793_consen 81 SEVKEG-----LGLPVATEVLDPEQAE-YVADLVDWLQIGARLMEN--------------------------QDLLEAAS 128 (270)
T ss_dssp HHHHHH-----HT-EEEEEESSGGGHH-HHHTTESEEEE-GGGTTC--------------------------HHHHHHHH
T ss_pred HHHHhh-----hCCeeeEEecCcccHH-HHHhcCcEEEECcchhcC--------------------------HHHHHHhc
Confidence 999995 7999999999755544 467888888886666544 34677788
Q ss_pred HcCCeEEEeeCCCCCcHhHHHHhCCChHHHHHHHHHH
Q 006566 229 KYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEF 265 (640)
Q Consensus 229 e~g~aIRIGvNhGSLs~ril~ryGdtp~gMVeSAle~ 265 (640)
..+.|+ |+--|-- .++.+|..+|..+
T Consensus 129 ~~~~pV--~~K~g~~---------~ai~~~~~Aae~~ 154 (270)
T PF00793_consen 129 GTGKPV--GFKNGTF---------AAIDEWLAAAEKH 154 (270)
T ss_dssp CTSSEE--EEEE-TT---------SHGGGHHHHHHHH
T ss_pred cCCCeE--EeccCCc---------cCHHHHHHHHhhh
Confidence 888888 6633321 4567777776443
No 183
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=73.34 E-value=21 Score=38.21 Aligned_cols=68 Identities=15% Similarity=0.289 Sum_probs=52.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCC---------HHHHHHHHHHHHHhhcCCCCcceeeccCC--CHHHHHHHhhhcC
Q 006566 115 KDVAGTVEEVMRIADQGADLVRITVQG---------KREADACFEIKNSLVQKNYNIPLVADIHF--APSVALRVAECFD 183 (640)
Q Consensus 115 ~Dv~atv~Qi~rl~~aGceiVRvtvp~---------~~~A~~l~~I~~~L~~~g~~iPLVADIHF--~~~~Al~Aa~~v~ 183 (640)
.|.+..++++.++.+.|..-+.+-+.. .++.+-++.|++. -|-++.|..|-|- ++.-|+..++.++
T Consensus 119 ~~~~~~~~~a~~~~~~Gf~~~Kikvg~~~~~~~~~~~~d~~~v~avr~~---~g~~~~l~vDan~~~~~~~A~~~~~~l~ 195 (341)
T cd03327 119 TDLDELPDEAKEYLKEGYRGMKMRFGYGPSDGHAGLRKNVELVRAIREA---VGYDVDLMLDCYMSWNLNYAIKMARALE 195 (341)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCCCCCcchHHHHHHHHHHHHHHHH---hCCCCcEEEECCCCCCHHHHHHHHHHhh
Confidence 478889999999999999999998631 4677788888875 3668999999874 6666666666665
Q ss_pred ce
Q 006566 184 KI 185 (640)
Q Consensus 184 KV 185 (640)
..
T Consensus 196 ~~ 197 (341)
T cd03327 196 KY 197 (341)
T ss_pred hc
Confidence 53
No 184
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=73.30 E-value=12 Score=39.40 Aligned_cols=82 Identities=17% Similarity=0.257 Sum_probs=57.1
Q ss_pred CCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCC--HHHHHHHHHHHHHhhcCCCCcceeeccCCC--HHH
Q 006566 99 GSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQG--KREADACFEIKNSLVQKNYNIPLVADIHFA--PSV 174 (640)
Q Consensus 99 GG~~PI~VQSMt~t~T~Dv~atv~Qi~rl~~aGceiVRvtvp~--~~~A~~l~~I~~~L~~~g~~iPLVADIHF~--~~~ 174 (640)
||..+-++....+....|.+..++++.++.+.|-..+.+-+.. .++.+-++.|++. -| +++|..|.|-. +.-
T Consensus 117 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~iKik~g~~~~~d~~~v~~lr~~---~g-~~~l~vD~n~~~~~~~ 192 (316)
T cd03319 117 GGGAPRPLETDYTISIDTPEAMAAAAKKAAKRGFPLLKIKLGGDLEDDIERIRAIREA---AP-DARLRVDANQGWTPEE 192 (316)
T ss_pred CCCCCCCceeEEEEeCCCHHHHHHHHHHHHHcCCCEEEEEeCCChhhHHHHHHHHHHh---CC-CCeEEEeCCCCcCHHH
Confidence 5555556655544445688999999999999999999998742 3566667777764 35 78999998754 444
Q ss_pred HHHHhhhcCc
Q 006566 175 ALRVAECFDK 184 (640)
Q Consensus 175 Al~Aa~~v~K 184 (640)
|++.++.++.
T Consensus 193 A~~~~~~l~~ 202 (316)
T cd03319 193 AVELLRELAE 202 (316)
T ss_pred HHHHHHHHHh
Confidence 5554444443
No 185
>PF07476 MAAL_C: Methylaspartate ammonia-lyase C-terminus; InterPro: IPR022662 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the C-terminal region of methylaspartate ammonia-lyase and contains a TIM barrel fold similar to the PF01188 from PFAM. This domain represents the catalytic domain and contains a metal binding site []. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=73.13 E-value=17 Score=38.16 Aligned_cols=101 Identities=18% Similarity=0.246 Sum_probs=68.4
Q ss_pred CCHHHHHHHHHHHHHcCCC-EEEEecCC-----HHHHHHHHHHHHHhhcCCCCcceeeccCCCH---HHHHHHhhhcCce
Q 006566 115 KDVAGTVEEVMRIADQGAD-LVRITVQG-----KREADACFEIKNSLVQKNYNIPLVADIHFAP---SVALRVAECFDKI 185 (640)
Q Consensus 115 ~Dv~atv~Qi~rl~~aGce-iVRvtvp~-----~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~---~~Al~Aa~~v~KV 185 (640)
.|.++..+=+.+|+++-+- =+||--|= .+.-++|++|++.|.++|+++.||||=+-|- -.+...+++++=|
T Consensus 86 ~d~~~~adYl~~l~~aA~P~~L~iEgP~d~g~r~~QI~~l~~Lr~~L~~~g~~v~iVADEWCNT~eDI~~F~da~A~dmV 165 (248)
T PF07476_consen 86 NDPDRMADYLAELEEAAAPFKLRIEGPMDAGSREAQIEALAELREELDRRGINVEIVADEWCNTLEDIREFADAKAADMV 165 (248)
T ss_dssp T-HHHHHHHHHHHHHHHTTS-EEEE-SB--SSHHHHHHHHHHHHHHHHHCT--EEEEE-TT--SHHHHHHHHHTT-SSEE
T ss_pred CCHHHHHHHHHHHHHhcCCCeeeeeCCcCCCChHHHHHHHHHHHHHHHhcCCCCeEEeehhcCCHHHHHHHHhcCCcCEE
Confidence 3889999999999876544 37887652 3566899999999999999999999988873 2345666778999
Q ss_pred eeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEe
Q 006566 186 RVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIG 237 (640)
Q Consensus 186 RINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIG 237 (640)
-|-.=..|.-.. ..+-|..||++|+--=.|
T Consensus 166 QIKtPDLGgi~n----------------------tieAvlyCk~~gvgaY~G 195 (248)
T PF07476_consen 166 QIKTPDLGGINN----------------------TIEAVLYCKEHGVGAYLG 195 (248)
T ss_dssp EE-GGGGSSTHH----------------------HHHHHHHHHHTT-EEEE-
T ss_pred EecCCCccchhh----------------------HHHHHHHHHhcCCceeec
Confidence 998877776443 456688999999855443
No 186
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=73.13 E-value=17 Score=41.36 Aligned_cols=100 Identities=17% Similarity=0.197 Sum_probs=67.6
Q ss_pred HHHHHHHHHHcCCCEEEEecCCH---HHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhh-cCcee--eCCCCCC
Q 006566 120 TVEEVMRIADQGADLVRITVQGK---READACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIR--VNPGNFA 193 (640)
Q Consensus 120 tv~Qi~rl~~aGceiVRvtvp~~---~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~-v~KVR--INPGN~~ 193 (640)
..+.+..|.++|++.|=|-+-.- .-.+.++.||+ ..-++|+||+-=-++.-|..++++ +|-|+ |-||-+-
T Consensus 226 ~~~ra~~Lv~aGVd~i~~D~a~g~~~~~~~~i~~i~~----~~~~~~vi~g~~~t~~~~~~l~~~G~d~i~vg~g~Gs~~ 301 (475)
T TIGR01303 226 VGGKAKALLDAGVDVLVIDTAHGHQVKMISAIKAVRA----LDLGVPIVAGNVVSAEGVRDLLEAGANIIKVGVGPGAMC 301 (475)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCCCcHHHHHHHHHHHH----HCCCCeEEEeccCCHHHHHHHHHhCCCEEEECCcCCccc
Confidence 34778899999999988765543 33344555554 344799999988999999999999 99998 6777764
Q ss_pred chhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeE
Q 006566 194 DRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAV 234 (640)
Q Consensus 194 d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aI 234 (640)
. ...||+--+. --..+.++++.|+++++++
T Consensus 302 t------tr~~~~~g~~-----~~~a~~~~~~~~~~~~~~v 331 (475)
T TIGR01303 302 T------TRMMTGVGRP-----QFSAVLECAAEARKLGGHV 331 (475)
T ss_pred c------CccccCCCCc-----hHHHHHHHHHHHHHcCCcE
Confidence 3 2233332211 1223445666678888776
No 187
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=73.07 E-value=15 Score=39.34 Aligned_cols=203 Identities=24% Similarity=0.317 Sum_probs=130.5
Q ss_pred eeEEEceeecCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEe----------cCCHHHHHHHHHHHHHhhcC
Q 006566 89 RTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRIT----------VQGKREADACFEIKNSLVQK 158 (640)
Q Consensus 89 r~V~VG~v~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~rl~~aGceiVRvt----------vp~~~~A~~l~~I~~~L~~~ 158 (640)
+-|.+|++.+|++++.+|= .--+.-..-|-.++-.+.+..+|++++|-- .|+..+ +.|+..++- ++
T Consensus 31 tivd~~~~~~g~~~~~~vi-AGPCsvEs~E~i~~~A~~vk~~Ga~~lRGgafKPRTSPYsFQGlge-~gL~~l~~a--~~ 106 (286)
T COG2876 31 TIVDVGDVVIGEGRALRVI-AGPCSVESEEQVRETAESVKAAGAKALRGGAFKPRTSPYSFQGLGE-EGLKLLKRA--AD 106 (286)
T ss_pred eeeccccceecCCcceEEE-ecCcccCCHHHHHHHHHHHHHcchhhccCCcCCCCCCcccccccCH-HHHHHHHHH--HH
Confidence 4567788999999743331 122223334556666778899999999963 566544 444444442 23
Q ss_pred CCCcceeeccCCCHHHHHHHhhhcCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEee
Q 006566 159 NYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT 238 (640)
Q Consensus 159 g~~iPLVADIHF~~~~Al~Aa~~v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGv 238 (640)
-+..|+|.-| -|++--..+++++|=++|--+|+-+ | +|++++-..+.|+
T Consensus 107 ~~Gl~vvtEv-m~~~~~e~~~~y~DilqvGARNMQN----F----------------------~LLke~G~~~kPv---- 155 (286)
T COG2876 107 ETGLPVVTEV-MDVRDVEAAAEYADILQVGARNMQN----F----------------------ALLKEVGRQNKPV---- 155 (286)
T ss_pred HcCCeeEEEe-cCHHHHHHHHhhhhHHHhcccchhh----h----------------------HHHHHhcccCCCe----
Confidence 4889999988 4788888888999999999999976 2 3778888888888
Q ss_pred CCCCCcHhHHHHhC--CChHHHHHHHHHHHHHHHHCCCCcEEEEE-------EeC-ChhhHHHHHHHHHHHHHHcCCCcc
Q 006566 239 NHGSLSDRIMSYYG--DSPRGMVESAFEFARICRKLDFHNFLFSM-------KAS-NPVVMVQAYRLLVAEMYVHGWDYP 308 (640)
Q Consensus 239 NhGSLs~ril~ryG--dtp~gMVeSAle~~~i~e~~~F~diviSm-------KsS-n~~~mV~AyRlL~~~m~~~g~dyP 308 (640)
|=+| | .|-+..+.+| +..-..|=.|+++-= |++ |+. =+.+.-.+-+. .+.|
T Consensus 156 ----LLKR-----g~~aTieEwL~AA----EYI~s~GN~~vILCERGIRtfe~~TRntL-Di~aV~~~kq~-----THLP 216 (286)
T COG2876 156 ----LLKR-----GLSATIEEWLNAA----EYILSHGNGNVILCERGIRTFEKATRNTL-DISAVPILKQE-----THLP 216 (286)
T ss_pred ----EEec-----CccccHHHHHHHH----HHHHhCCCCcEEEEeccccccccccccee-chHHHHHHHhh-----cCCC
Confidence 4444 3 3555444444 333466656655531 111 111 13333333333 7789
Q ss_pred eEEEeecCCCCCcce---eehHHHHHHHhhhcCCcEEEeecCCCCch
Q 006566 309 LHLGVTEAGEGEDGR---MKSAIGIGTLLQDGLGDTIRVSLTEPPEK 352 (640)
Q Consensus 309 LHLGVTEAG~gedGr---IKSAiGIG~LL~DGIGDTIRVSLTedP~~ 352 (640)
.-.-+|-+....+-. =|.|+..|+ |+|.+-.-++|+.
T Consensus 217 VivDpSH~~Grr~lv~pla~AA~AaGA-------dglmiEVHp~P~~ 256 (286)
T COG2876 217 VIVDPSHATGRRDLVEPLAKAAIAAGA-------DGLMIEVHPDPEK 256 (286)
T ss_pred EEECCCCcccchhhHHHHHHHHHhccC-------CeeEEEecCCccc
Confidence 988888876555533 366777776 8888888888875
No 188
>cd01137 PsaA Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=73.07 E-value=19 Score=37.74 Aligned_cols=141 Identities=15% Similarity=0.241 Sum_probs=87.4
Q ss_pred ecCCCCceEEEecc--CCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcC-C-----CCccee--e
Q 006566 97 AIGSEHPIRVQTMT--TNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQK-N-----YNIPLV--A 166 (640)
Q Consensus 97 ~IGG~~PI~VQSMt--~t~T~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~-g-----~~iPLV--A 166 (640)
.|||+ -+.|+++. +.|.++.+-+.+|+++|.+| |+|=..=.+.+. -+..+.+.+... + -.++++ .
T Consensus 33 ~I~Gd-~v~V~~Lip~g~dPH~ye~~p~d~~~l~~A--dlvv~~G~~~E~--wl~~~~~~~~~~~~~v~~~~~i~~~~~~ 107 (287)
T cd01137 33 NIAGD-RVNVTSIVPPGADPHEYEPTPSDIKKLSKA--DLILYNGLNLEP--WLERLVKNAGKDVPVVAVSEGIDPIPLE 107 (287)
T ss_pred HHcCC-eeEEEEecCCCCCccCCCCCHHHHHHHHhC--CEEEEcCCCcHH--HHHHHHHhcCCCCcEEEecCCccccccC
Confidence 36665 48888886 45679999999999999965 666444455542 566666544211 0 012221 0
Q ss_pred --------cc--CCCHHHHHHHhhh-cCce-eeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeE
Q 006566 167 --------DI--HFAPSVALRVAEC-FDKI-RVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAV 234 (640)
Q Consensus 167 --------DI--HF~~~~Al~Aa~~-v~KV-RINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aI 234 (640)
|= .++|..+...++. .+++ ++.|.|=.. |+. .-+.|.++|+.+.+++...+..+++.++.+
T Consensus 108 ~~~~~~~~dPH~Wldp~~~~~~a~~Ia~~L~~~dP~~~~~----y~~---N~~~~~~~L~~l~~~~~~~l~~~~~~~~~~ 180 (287)
T cd01137 108 EGHYKGKPDPHAWMSPKNAIIYVKNIAKALSEADPANAET----YQK---NAAAYKAKLKALDEWAKAKFATIPAEKRKL 180 (287)
T ss_pred ccccCCCCCCCcCcCHHHHHHHHHHHHHHHHHHCcccHHH----HHH---HHHHHHHHHHHHHHHHHHHHhcCCcccCEE
Confidence 22 3568888777776 4444 678877221 110 125688999999998888877765555553
Q ss_pred EEeeCCCCCcHhHHHHhC
Q 006566 235 RIGTNHGSLSDRIMSYYG 252 (640)
Q Consensus 235 RIGvNhGSLs~ril~ryG 252 (640)
=+-|-++. -+.++||
T Consensus 181 --v~~H~af~-Y~~~~yG 195 (287)
T cd01137 181 --VTSEGAFS-YFAKAYG 195 (287)
T ss_pred --EEecccHH-HHHHHcC
Confidence 67777763 3566666
No 189
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=73.04 E-value=1.3e+02 Score=31.63 Aligned_cols=146 Identities=14% Similarity=0.118 Sum_probs=89.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecC----------CHHHHHHHHHHHHHhhcCCCCcceeec------cCC-------C
Q 006566 115 KDVAGTVEEVMRIADQGADLVRITVQ----------GKREADACFEIKNSLVQKNYNIPLVAD------IHF-------A 171 (640)
Q Consensus 115 ~Dv~atv~Qi~rl~~aGceiVRvtvp----------~~~~A~~l~~I~~~L~~~g~~iPLVAD------IHF-------~ 171 (640)
...+..++-+..|.++|.+.+=+..| +..+.+.++.|++. .-+.+|.+= +.| .
T Consensus 18 ~~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~----~~~~~l~~~~r~~~~~~~~~~p~~~~ 93 (275)
T cd07937 18 MRTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNEDPWERLRELRKA----MPNTPLQMLLRGQNLVGYRHYPDDVV 93 (275)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEccCCcchhhhccccCCCHHHHHHHHHHh----CCCCceehhcccccccCccCCCcHHH
Confidence 45567777889999999999999886 56777888888875 234555531 111 1
Q ss_pred HHHHHHHhhh-cCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCC-CCCcHhHHH
Q 006566 172 PSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNH-GSLSDRIMS 249 (640)
Q Consensus 172 ~~~Al~Aa~~-v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNh-GSLs~ril~ 249 (640)
...-..++++ ++-||| +.. ... -+++.+.++.+|++|.-++..+.- .+ .
T Consensus 94 ~~di~~~~~~g~~~iri----~~~-~~~------------------~~~~~~~i~~ak~~G~~v~~~i~~~~~------~ 144 (275)
T cd07937 94 ELFVEKAAKNGIDIFRI----FDA-LND------------------VRNLEVAIKAVKKAGKHVEGAICYTGS------P 144 (275)
T ss_pred HHHHHHHHHcCCCEEEE----eec-CCh------------------HHHHHHHHHHHHHCCCeEEEEEEecCC------C
Confidence 2222355666 788887 111 100 135788999999999888876631 11 1
Q ss_pred HhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEEeCChhhHHHHHHHHHHHHH
Q 006566 250 YYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMY 301 (640)
Q Consensus 250 ryGdtp~gMVeSAle~~~i~e~~~F~diviSmKsSn~~~mV~AyRlL~~~m~ 301 (640)
+ -+|+-+ .++++.+.+.|.+. |+++-|.=..+-+....+++.+.
T Consensus 145 ~--~~~~~~----~~~~~~~~~~Ga~~--i~l~DT~G~~~P~~v~~lv~~l~ 188 (275)
T cd07937 145 V--HTLEYY----VKLAKELEDMGADS--ICIKDMAGLLTPYAAYELVKALK 188 (275)
T ss_pred C--CCHHHH----HHHHHHHHHcCCCE--EEEcCCCCCCCHHHHHHHHHHHH
Confidence 1 245433 34555667778774 57777654444444444555543
No 190
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=72.93 E-value=67 Score=34.16 Aligned_cols=169 Identities=13% Similarity=0.205 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHH-HHHHHHHhh--cCCCC-cceeeccCCC----HHHHHHHhhh-cC
Q 006566 113 DTKDVAGTVEEVMRIADQGADLVRITVQGKREADA-CFEIKNSLV--QKNYN-IPLVADIHFA----PSVALRVAEC-FD 183 (640)
Q Consensus 113 ~T~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~A~~-l~~I~~~L~--~~g~~-iPLVADIHF~----~~~Al~Aa~~-v~ 183 (640)
++.+.+-.-.-++.-++.++-++=-..|+.-+... ++.+....+ ++.++ +|++ +|.| +.....|++. +.
T Consensus 22 n~~n~e~~~avi~aAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~~a~~~~~vpv~--lhlDH~~~~e~i~~ai~~Gf~ 99 (282)
T TIGR01859 22 NFNNLEWTQAILEAAEEENSPVIIQVSEGAIKYMGGYKMAVAMVKTLIERMSIVPVA--LHLDHGSSYESCIKAIKAGFS 99 (282)
T ss_pred EECCHHHHHHHHHHHHHhCCCEEEEcCcchhhccCcHHHHHHHHHHHHHHCCCCeEE--EECCCCCCHHHHHHHHHcCCC
Q ss_pred ceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEE--EeeCCCCCcHhHHH--HhCCChHHHH
Q 006566 184 KIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVR--IGTNHGSLSDRIMS--YYGDSPRGMV 259 (640)
Q Consensus 184 KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIR--IGvNhGSLs~ril~--ryGdtp~gMV 259 (640)
.|=|-.-+....+. -+..+++++.|+++|+.+- ||. -|.-++.+.. ..-.+|
T Consensus 100 sVmid~s~l~~~en-------------------i~~t~~v~~~a~~~gv~Ve~ElG~-~gg~ed~~~g~~~~~t~~---- 155 (282)
T TIGR01859 100 SVMIDGSHLPFEEN-------------------LALTKKVVEIAHAKGVSVEAELGT-LGGIEDGVDEKEAELADP---- 155 (282)
T ss_pred EEEECCCCCCHHHH-------------------HHHHHHHHHHHHHcCCEEEEeeCC-CcCccccccccccccCCH----
Q ss_pred HHHHHHHHHHHHCCCCcEEEE------EEeCChhhHHHHHHHHHHHHHHcCCCcce--EE--Eeec
Q 006566 260 ESAFEFARICRKLDFHNFLFS------MKASNPVVMVQAYRLLVAEMYVHGWDYPL--HL--GVTE 315 (640)
Q Consensus 260 eSAle~~~i~e~~~F~diviS------mKsSn~~~mV~AyRlL~~~m~~~g~dyPL--HL--GVTE 315 (640)
|.|.+|+ ++.|-+-+.+| +-...+..-.+-.+.+.+. .+.|| |= |+++
T Consensus 156 eea~~f~---~~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~-----~~iPlv~hGgSGi~~ 213 (282)
T TIGR01859 156 DEAEQFV---KETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKEL-----TNIPLVLHGASGIPE 213 (282)
T ss_pred HHHHHHH---HHHCcCEEeeccCccccccCCCCccCHHHHHHHHHH-----hCCCEEEECCCCCCH
No 191
>PRK06256 biotin synthase; Validated
Probab=72.42 E-value=1.3e+02 Score=31.94 Aligned_cols=73 Identities=18% Similarity=0.261 Sum_probs=41.2
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEec----CCHHHHHHHHHHHHHhhcCCCCcceeecc-CCCHHHHHHHhhh-cCceee
Q 006566 114 TKDVAGTVEEVMRIADQGADLVRITV----QGKREADACFEIKNSLVQKNYNIPLVADI-HFAPSVALRVAEC-FDKIRV 187 (640)
Q Consensus 114 T~Dv~atv~Qi~rl~~aGceiVRvtv----p~~~~A~~l~~I~~~L~~~g~~iPLVADI-HF~~~~Al~Aa~~-v~KVRI 187 (640)
..+.+..+++++.+.+.|+.-+-+.. |+.++.+-+.++.+.+++. .++.+.+-. -.++..+..-.++ ++.|=+
T Consensus 90 ~~s~eeI~~~~~~~~~~g~~~~~l~~~g~~p~~~~~~~~~e~i~~i~~~-~~i~~~~~~g~l~~e~l~~LkeaG~~~v~~ 168 (336)
T PRK06256 90 WLDIEELIEAAKEAIEEGAGTFCIVASGRGPSGKEVDQVVEAVKAIKEE-TDLEICACLGLLTEEQAERLKEAGVDRYNH 168 (336)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEecCCCCCchHHHHHHHHHHHHHhc-CCCcEEecCCcCCHHHHHHHHHhCCCEEec
Confidence 46889999999999999986565543 4444444444455444443 344333211 1344554444444 554433
No 192
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=72.32 E-value=20 Score=33.04 Aligned_cols=88 Identities=17% Similarity=0.205 Sum_probs=61.6
Q ss_pred CCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHH----HHHHHHHHHHHhhcCCCCcceeeccCCCHHHHH
Q 006566 101 EHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKR----EADACFEIKNSLVQKNYNIPLVADIHFAPSVAL 176 (640)
Q Consensus 101 ~~PI~VQSMt~t~T~Dv~atv~Qi~rl~~aGceiVRvtvp~~~----~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al 176 (640)
+.|+.+|-+.+......... .+.+.++|+|.|=|-..... ..+.++.|++.+ -++|++..+|-......
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~---a~~~~~~g~d~v~l~~~~~~~~~~~~~~~~~i~~~~----~~~~v~~~~~~~~~~~~ 129 (200)
T cd04722 57 DLPLGVQLAINDAAAAVDIA---AAAARAAGADGVEIHGAVGYLAREDLELIRELREAV----PDVKVVVKLSPTGELAA 129 (200)
T ss_pred CCcEEEEEccCCchhhhhHH---HHHHHHcCCCEEEEeccCCcHHHHHHHHHHHHHHhc----CCceEEEEECCCCccch
Confidence 46999999887765444322 56888999999988766643 556677777742 26999999986644333
Q ss_pred H-Hhhh-cCceeeCCCCCCch
Q 006566 177 R-VAEC-FDKIRVNPGNFADR 195 (640)
Q Consensus 177 ~-Aa~~-v~KVRINPGN~~d~ 195 (640)
. +.+. ++-|-+.+++.+..
T Consensus 130 ~~~~~~g~d~i~~~~~~~~~~ 150 (200)
T cd04722 130 AAAEEAGVDEVGLGNGGGGGG 150 (200)
T ss_pred hhHHHcCCCEEEEcCCcCCCC
Confidence 2 3445 89999999887653
No 193
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=72.19 E-value=15 Score=38.56 Aligned_cols=74 Identities=22% Similarity=0.251 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEEeCChhhHHHHHHHHHH
Q 006566 219 VFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVA 298 (640)
Q Consensus 219 ~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGdtp~gMVeSAle~~~i~e~~~F~diviSmKsSn~~~mV~AyRlL~~ 298 (640)
.+++.++.|++||+.+=-| |.|=+..+.+ .+.-+|++.|+++||+-|-||-=+-+.. -.....+++
T Consensus 42 ~l~eki~la~~~~V~v~~G---Gtl~E~~~~q---------~~~~~Yl~~~k~lGf~~IEiS~G~~~i~--~~~~~rlI~ 107 (237)
T TIGR03849 42 IVKEKIEMYKDYGIKVYPG---GTLFEIAHSK---------GKFDEYLNECDELGFEAVEISDGSMEIS--LEERCNLIE 107 (237)
T ss_pred HHHHHHHHHHHcCCeEeCC---ccHHHHHHHh---------hhHHHHHHHHHHcCCCEEEEcCCccCCC--HHHHHHHHH
Confidence 4788899999999999555 6564443322 2445799999999999999996655533 445556888
Q ss_pred HHHHcCCC
Q 006566 299 EMYVHGWD 306 (640)
Q Consensus 299 ~m~~~g~d 306 (640)
+..+.|+.
T Consensus 108 ~~~~~g~~ 115 (237)
T TIGR03849 108 RAKDNGFM 115 (237)
T ss_pred HHHhCCCe
Confidence 88777765
No 194
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=72.17 E-value=30 Score=36.30 Aligned_cols=210 Identities=20% Similarity=0.236 Sum_probs=118.0
Q ss_pred eEEEceeecCCCCceEEEeccCCCC-CC---HHHHHHHHHHHHHcCCCEEEEe-----------------cCCHHHHHHH
Q 006566 90 TVMVGNVAIGSEHPIRVQTMTTNDT-KD---VAGTVEEVMRIADQGADLVRIT-----------------VQGKREADAC 148 (640)
Q Consensus 90 ~V~VG~v~IGG~~PI~VQSMt~t~T-~D---v~atv~Qi~rl~~aGceiVRvt-----------------vp~~~~A~~l 148 (640)
.+++|++.+ .|-|..-.|++... .| ++..++--.+.+.-|+-+| +| .-+.+..+++
T Consensus 3 p~~i~~~~l--~NR~~~~p~~~~~~~~~g~~~~~~~~~y~~ra~gg~gli-i~e~~~v~~~~~~~~~~~~~~~~~~~~~~ 79 (327)
T cd02803 3 PIKIGGLTL--KNRIVMAPMTENMATEDGTPTDELIEYYEERAKGGVGLI-ITEAAYVDPEGKGYPGQLGIYDDEQIPGL 79 (327)
T ss_pred CcccCCEee--ccccEecccccccccCCCCCCHHHHHHHHHHhCcCCcEE-EECcEEEcCcccCCCCCcCcCCHHHHHHH
Confidence 355666665 67788888875544 23 5666666777777777666 22 1245678888
Q ss_pred HHHHHHhhcCCCCcceeeccCCCHHHHHHHhhhcCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHH
Q 006566 149 FEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCK 228 (640)
Q Consensus 149 ~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~K 228 (640)
+++.+..++.|..+ ++=++-.-+.+.... ....=+-|..+..........+.| .+|++.|.+.|..-.+.|+
T Consensus 80 ~~~~~~vh~~g~~~--~~Ql~h~G~~~~~~~--~~~~~~~~s~~~~~~~~~~~~~mt----~~ei~~~i~~~~~aA~~a~ 151 (327)
T cd02803 80 RKLTEAVHAHGAKI--FAQLAHAGRQAQPNL--TGGPPPAPSAIPSPGGGEPPREMT----KEEIEQIIEDFAAAARRAK 151 (327)
T ss_pred HHHHHHHHhCCCHh--hHHhhCCCcCCCCcC--CCCCccCCCCCCCCCCCCCCCcCC----HHHHHHHHHHHHHHHHHHH
Confidence 88888888877542 222211101000000 000001111111100000111222 3567788888888888888
Q ss_pred HcCCe-EEEeeCCCCCcHhHH--------HHhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEEeCChh-----hHHHHHH
Q 006566 229 KYGRA-VRIGTNHGSLSDRIM--------SYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPV-----VMVQAYR 294 (640)
Q Consensus 229 e~g~a-IRIGvNhGSLs~ril--------~ryGdtp~gMVeSAle~~~i~e~~~F~diviSmKsSn~~-----~mV~AyR 294 (640)
+.|.- |=|=..||-|-..++ .+||.+.+.-..-.+|.++-.++.==.++.|++|-|-.. ...+...
T Consensus 152 ~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~~~g~~~~e~~ 231 (327)
T cd02803 152 EAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFVPGGLTLEEAI 231 (327)
T ss_pred HcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccCCCCCCHHHHH
Confidence 87653 444455776633333 368877776666667777766553115779999987311 2356667
Q ss_pred HHHHHHHHcCCCcceEE
Q 006566 295 LLVAEMYVHGWDYPLHL 311 (640)
Q Consensus 295 lL~~~m~~~g~dyPLHL 311 (640)
.+++++.+.|.+| +|+
T Consensus 232 ~la~~l~~~G~d~-i~v 247 (327)
T cd02803 232 EIAKALEEAGVDA-LHV 247 (327)
T ss_pred HHHHHHHHcCCCE-EEe
Confidence 7888888888874 443
No 195
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=72.06 E-value=8.4 Score=43.76 Aligned_cols=67 Identities=16% Similarity=0.137 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHcCCCEEE--------EecCCH-----HHHHHHHHHHHHhhcCCCCcceeeccCCC-HHHHHHHhhh-cC
Q 006566 119 GTVEEVMRIADQGADLVR--------ITVQGK-----READACFEIKNSLVQKNYNIPLVADIHFA-PSVALRVAEC-FD 183 (640)
Q Consensus 119 atv~Qi~rl~~aGceiVR--------vtvp~~-----~~A~~l~~I~~~L~~~g~~iPLVADIHF~-~~~Al~Aa~~-v~ 183 (640)
+|.++++.|+++|||+|+ .|+... .-+.++-+..+.+++ +.+|+|||-.+. |--..+|+.+ ++
T Consensus 275 ~t~~~~~~l~~~G~d~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~--~~~~viadGgi~~~~di~kala~GA~ 352 (475)
T TIGR01303 275 VSAEGVRDLLEAGANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEARK--LGGHVWADGGVRHPRDVALALAAGAS 352 (475)
T ss_pred CCHHHHHHHHHhCCCEEEECCcCCccccCccccCCCCchHHHHHHHHHHHHH--cCCcEEEeCCCCCHHHHHHHHHcCCC
Confidence 567788889999999999 555433 456666666655554 379999996655 3333355555 66
Q ss_pred ceee
Q 006566 184 KIRV 187 (640)
Q Consensus 184 KVRI 187 (640)
.|=+
T Consensus 353 ~vm~ 356 (475)
T TIGR01303 353 NVMV 356 (475)
T ss_pred EEee
Confidence 6644
No 196
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=72.04 E-value=10 Score=42.89 Aligned_cols=67 Identities=19% Similarity=0.284 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHcCCCEEEEe-cC------------CHHHHHHHHHHHHHhhcCCCCcceeeccCCC-HHHHHHHhhh-cC
Q 006566 119 GTVEEVMRIADQGADLVRIT-VQ------------GKREADACFEIKNSLVQKNYNIPLVADIHFA-PSVALRVAEC-FD 183 (640)
Q Consensus 119 atv~Qi~rl~~aGceiVRvt-vp------------~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~-~~~Al~Aa~~-v~ 183 (640)
.|.+++++|+++|||.|++. .| +.-.++++.++.+..+ ...+|+|||-.+. |.-+.+|+.. ++
T Consensus 278 ~t~e~a~~l~~aGad~i~vg~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~--~~~~~viadGGi~~~~di~kAla~GA~ 355 (486)
T PRK05567 278 ATAEAARALIEAGADAVKVGIGPGSICTTRIVAGVGVPQITAIADAAEAAK--KYGIPVIADGGIRYSGDIAKALAAGAS 355 (486)
T ss_pred CCHHHHHHHHHcCCCEEEECCCCCccccceeecCCCcCHHHHHHHHHHHhc--cCCCeEEEcCCCCCHHHHHHHHHhCCC
Confidence 35678889999999999873 12 2346778888887544 3569999997765 5666677776 77
Q ss_pred ceee
Q 006566 184 KIRV 187 (640)
Q Consensus 184 KVRI 187 (640)
.|=+
T Consensus 356 ~v~~ 359 (486)
T PRK05567 356 AVML 359 (486)
T ss_pred EEEE
Confidence 7654
No 197
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=71.73 E-value=31 Score=41.64 Aligned_cols=138 Identities=14% Similarity=0.225 Sum_probs=86.6
Q ss_pred HHHHHHHH-HcCCCEEEEecCCHHHHHHHHHHHHHhhcCCCC-----cceeeccCCCHHHHHHHhhh---cCceeeCCCC
Q 006566 121 VEEVMRIA-DQGADLVRITVQGKREADACFEIKNSLVQKNYN-----IPLVADIHFAPSVALRVAEC---FDKIRVNPGN 191 (640)
Q Consensus 121 v~Qi~rl~-~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~-----iPLVADIHF~~~~Al~Aa~~---v~KVRINPGN 191 (640)
++-|.|.. ++|+.=|||-+|-+..++-+..+++.++..|+. +|+++=| =.|..++.+-++ +|-+=|-|..
T Consensus 616 lraI~ral~d~G~~~~~Im~PmV~s~eE~~~~~~~~~~~g~~~~~~~~~vg~mI-Etp~av~~~d~Ia~~vDfisIGtnD 694 (782)
T TIGR01418 616 CRAIKRVREEMGLTNVEVMIPFVRTPEEGKRALEIMAEEGLRRGKNGLEVYVMC-EVPSNALLADEFAKEFDGFSIGSND 694 (782)
T ss_pred HHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHHHhCccccccCcEEEEEE-CcHHHHHHHHHHHHhCCEEEECchH
Confidence 44455554 679888999999998888888888888776653 3333322 246666644333 8888899987
Q ss_pred CCchh----hhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCCChHHHHHHHHHHHH
Q 006566 192 FADRR----AQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFAR 267 (640)
Q Consensus 192 ~~d~~----k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGdtp~gMVeSAle~~~ 267 (640)
+.--- +.-... ..-|+.....+.+.++.+++.||++|+++ |+ .|... +..| +.+.
T Consensus 695 Ltq~~lg~dR~n~~~---~~~~~~~hPaV~~~i~~vi~~a~~~g~~v--gi-cge~~-------~~~p--------~~~~ 753 (782)
T TIGR01418 695 LTQLTLGVDRDSGLV---AHLFDERNPAVLRLIEMAIKAAKEHGKKV--GI-CGQAP-------SDYP--------EVVE 753 (782)
T ss_pred HHHHHhCccCCchhh---cccCCCCCHHHHHHHHHHHHHHHhcCCeE--EE-eCCCC-------CCCH--------HHHH
Confidence 65310 000000 01122233455667888999999999997 66 55431 0123 3566
Q ss_pred HHHHCCCCcEEEE
Q 006566 268 ICRKLDFHNFLFS 280 (640)
Q Consensus 268 i~e~~~F~diviS 280 (640)
.+-.+||+.+.++
T Consensus 754 ~l~~~G~~~ls~~ 766 (782)
T TIGR01418 754 FLVEEGIDSISLN 766 (782)
T ss_pred HHHHcCCCEEEEC
Confidence 7788999876665
No 198
>PRK07329 hypothetical protein; Provisional
Probab=71.52 E-value=19 Score=36.87 Aligned_cols=78 Identities=15% Similarity=0.081 Sum_probs=57.1
Q ss_pred HhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEEeCChhhHHHHHHHH
Q 006566 217 EEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLL 296 (640)
Q Consensus 217 ~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGdtp~gMVeSAle~~~i~e~~~F~diviSmKsSn~~~mV~AyRlL 296 (640)
++.+.+++++|+++|++| =+|.+++. +|+..+ ...+.++.|.+.|=..|+++-=|-+|...-..+...
T Consensus 164 ~~~~~~i~~~~~~~~~~l--EiNt~~~~-----~~~~~~-----~~~~~l~~~~~~g~~~i~~gSDAH~~~~vg~~~~~a 231 (246)
T PRK07329 164 EPQLTRIFAKMIDNDLAF--ELNTKSMY-----LYGNEG-----LYRYAIELYKQLGGKLFSIGSDAHKLEHYRYNFDDA 231 (246)
T ss_pred HHHHHHHHHHHHHcCCeE--EEECcccc-----cCCCCc-----chHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHH
Confidence 455778899999999999 55877773 344322 114458999999987889998888887655666667
Q ss_pred HHHHHHcCCC
Q 006566 297 VAEMYVHGWD 306 (640)
Q Consensus 297 ~~~m~~~g~d 306 (640)
.+.+++.|++
T Consensus 232 ~~~l~~~g~~ 241 (246)
T PRK07329 232 QKLLKEHGIK 241 (246)
T ss_pred HHHHHHcCCc
Confidence 7777777764
No 199
>PRK05481 lipoyl synthase; Provisional
Probab=71.08 E-value=1e+02 Score=32.72 Aligned_cols=165 Identities=15% Similarity=0.085 Sum_probs=88.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCH-----HHHHHHHHHHHHhhcC--CCCcceeeccCCCH--HHHHHHhhh-cCc
Q 006566 115 KDVAGTVEEVMRIADQGADLVRITVQGK-----READACFEIKNSLVQK--NYNIPLVADIHFAP--SVALRVAEC-FDK 184 (640)
Q Consensus 115 ~Dv~atv~Qi~rl~~aGceiVRvtvp~~-----~~A~~l~~I~~~L~~~--g~~iPLVADIHF~~--~~Al~Aa~~-v~K 184 (640)
.+.+..+++++++.+.|+.-|-++.++. ...+.+.++-+.|.+. +..+-++. -|+.. .......+. ++-
T Consensus 80 ~~~eeI~~ea~~l~~~G~kEI~L~gg~~~d~~~~~~~~l~~Ll~~I~~~~p~irI~~l~-~~~~~~~e~L~~l~~ag~~i 158 (289)
T PRK05481 80 LDPDEPERVAEAVARMGLKYVVITSVDRDDLPDGGAQHFAETIRAIRELNPGTTIEVLI-PDFRGRMDALLTVLDARPDV 158 (289)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEEeeCCCcccccHHHHHHHHHHHHhhCCCcEEEEEc-cCCCCCHHHHHHHHhcCcce
Confidence 7789999999999999999999996643 1234555555554442 22222222 13321 112222222 221
Q ss_pred eeeCCCCCCchhhhccccccchHHHHHHH--hhhHhhHHHHHHHHHHc--CCeEEEeeCCCCCcHhHHHHhCCChHHHHH
Q 006566 185 IRVNPGNFADRRAQFEQLEYTDDEYQKEL--QHIEEVFSPLVEKCKKY--GRAVRIGTNHGSLSDRIMSYYGDSPRGMVE 260 (640)
Q Consensus 185 VRINPGN~~d~~k~F~~~eYtdeeY~~El--e~I~~~f~~lV~~~Ke~--g~aIRIGvNhGSLs~ril~ryGdtp~gMVe 260 (640)
+..|. ..+ . +..+.+ ..-.+.+..+++.+++. |++++-|+=-| +|.|.+.
T Consensus 159 ~~~~~--ets-~-----------~vlk~m~r~~t~e~~le~i~~ar~~~pgi~~~t~~IvG---------fGET~ed--- 212 (289)
T PRK05481 159 FNHNL--ETV-P-----------RLYKRVRPGADYERSLELLKRAKELHPGIPTKSGLMVG---------LGETDEE--- 212 (289)
T ss_pred eeccc--cCh-H-----------HHHHHhCCCCCHHHHHHHHHHHHHhCCCCeEeeeeEEE---------CCCCHHH---
Confidence 22110 000 0 000000 01123477889999999 98887666223 2667744
Q ss_pred HHHHHHHHHHHCCCCcEEE---EEEeC---ChhhH--HHHHHHHHHHHHHcCCCc
Q 006566 261 SAFEFARICRKLDFHNFLF---SMKAS---NPVVM--VQAYRLLVAEMYVHGWDY 307 (640)
Q Consensus 261 SAle~~~i~e~~~F~divi---SmKsS---n~~~m--V~AyRlL~~~m~~~g~dy 307 (640)
-.+.++.+++++|+.+.+ |-+|. .+..- -+-+..|.+...+-|+.|
T Consensus 213 -~~~tl~~lrel~~d~v~if~Ys~pa~k~~~v~~~~k~~r~~~l~~~~~~i~~~~ 266 (289)
T PRK05481 213 -VLEVMDDLRAAGVDILTIGQYLQPSRKHLPVERYVTPEEFDEYKEIALELGFLH 266 (289)
T ss_pred -HHHHHHHHHhcCCCEEEEEccCCCccccCCCCCcCCHHHHHHHHHHHHHcCchh
Confidence 456788899999988877 43333 33322 333444666666667654
No 200
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=70.98 E-value=44 Score=34.54 Aligned_cols=118 Identities=14% Similarity=0.091 Sum_probs=89.1
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhhcCceeeCCCCCC
Q 006566 114 TKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFA 193 (640)
Q Consensus 114 T~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~v~KVRINPGN~~ 193 (640)
..|.+.+++.++.|.+.|...+=||-.+....++++.+++...++.-++-+=|=-=.++.-|..|+++=.+.=+-|| +
T Consensus 23 ~~~~~~a~~~~~al~~gGi~~iEiT~~tp~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~FiVsP~-~- 100 (222)
T PRK07114 23 HADVEVAKKVIKACYDGGARVFEFTNRGDFAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGANFIVTPL-F- 100 (222)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEeCCCCcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCCEEECCC-C-
Confidence 35889999999999999999999999999999999999866544333355556666889999999888444557775 2
Q ss_pred chhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCCChHHHHHHHHHHHHHHHHCC
Q 006566 194 DRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLD 273 (640)
Q Consensus 194 d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGdtp~gMVeSAle~~~i~e~~~ 273 (640)
+ ..|++.|+++|++.==|+ -||- .+.-+.++|
T Consensus 101 ~--------------------------~~v~~~~~~~~i~~iPG~--------------~Tps--------Ei~~A~~~G 132 (222)
T PRK07114 101 N--------------------------PDIAKVCNRRKVPYSPGC--------------GSLS--------EIGYAEELG 132 (222)
T ss_pred C--------------------------HHHHHHHHHcCCCEeCCC--------------CCHH--------HHHHHHHCC
Confidence 2 348999999999984444 3663 334456789
Q ss_pred CCcEEEEE
Q 006566 274 FHNFLFSM 281 (640)
Q Consensus 274 F~diviSm 281 (640)
++-++|-=
T Consensus 133 a~~vKlFP 140 (222)
T PRK07114 133 CEIVKLFP 140 (222)
T ss_pred CCEEEECc
Confidence 98887753
No 201
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=70.98 E-value=43 Score=37.02 Aligned_cols=117 Identities=13% Similarity=0.157 Sum_probs=85.4
Q ss_pred cCCCCceEEEeccCCC---CC--CHHHHHHHHHHHHHcCCC-EEEEecCCH-----HHHHHHHHHHHHhhcCCCCcceee
Q 006566 98 IGSEHPIRVQTMTTND---TK--DVAGTVEEVMRIADQGAD-LVRITVQGK-----READACFEIKNSLVQKNYNIPLVA 166 (640)
Q Consensus 98 IGG~~PI~VQSMt~t~---T~--Dv~atv~Qi~rl~~aGce-iVRvtvp~~-----~~A~~l~~I~~~L~~~g~~iPLVA 166 (640)
+|.+.+++|=- |.- -- |.+.+++-+++|++.+-+ +.-+-=|=. .+-+.+.+++++++++|+.+|+++
T Consensus 189 ~G~~~~l~vDa--N~~w~~~~~~~~~~A~~~~~~Le~~~~~~~~~iEqP~~~~d~~~~~~~~a~Lr~~~~~~~~~iPIa~ 266 (369)
T cd03314 189 PGYHPILHIDV--YGTIGQAFDPDPDRAADYLATLEEAAAPFPLRIEGPMDAGSREAQIERMAALRAELDRRGVGVRIVA 266 (369)
T ss_pred cCCCCEEEEEc--CCccccccCCCHHHHHHHHHHHHHhcCCCcEEEecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEe
Confidence 57777887764 311 12 677788888888876322 444554432 236889999988878889999999
Q ss_pred ccC-CCHHHHHHHhhh--cCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEee
Q 006566 167 DIH-FAPSVALRVAEC--FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT 238 (640)
Q Consensus 167 DIH-F~~~~Al~Aa~~--v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGv 238 (640)
|=+ +++.-+..+++. ++-|.+.+...|.-.+ ...+.+.|..+|+++=+|-
T Consensus 267 dEs~~t~~d~~~li~~~a~div~~kl~k~GGIt~----------------------a~kia~lA~a~Gi~~~~h~ 319 (369)
T cd03314 267 DEWCNTLEDIRDFADAGAAHMVQIKTPDLGGIDN----------------------TIDAVLYCKEHGVGAYLGG 319 (369)
T ss_pred cCCcCCHHHHHHHHHhCCCCEEEecchhcCCHHH----------------------HHHHHHHHHHcCCcEEEeC
Confidence 977 456666666554 9999999999988443 7788999999999997763
No 202
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=70.80 E-value=28 Score=38.40 Aligned_cols=93 Identities=8% Similarity=0.082 Sum_probs=62.5
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCCCcceeeccC-CCHHHHHHHhh--hcCceeeCCCC
Q 006566 115 KDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIH-FAPSVALRVAE--CFDKIRVNPGN 191 (640)
Q Consensus 115 ~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~iPLVADIH-F~~~~Al~Aa~--~v~KVRINPGN 191 (640)
-+.+.+++-+++|.+ +.+.+===++ +.+.+.++++. +++|+.+|=. +++.-+..+++ .++-+++.|..
T Consensus 224 w~~~~A~~~~~~l~~-~l~~iEeP~~---d~~~~~~L~~~-----~~~PIa~dEs~~~~~~~~~~i~~~avdil~~d~~~ 294 (395)
T cd03323 224 WSLETAIRLAKELEG-VLAYLEDPCG---GREGMAEFRRA-----TGLPLATNMIVTDFRQLGHAIQLNAVDIPLADHHF 294 (395)
T ss_pred cCHHHHHHHHHhcCc-CCCEEECCCC---CHHHHHHHHHh-----cCCCEEcCCcccCHHHHHHHHHcCCCcEEeecccc
Confidence 345555555566655 5443321123 56667777774 7899999944 45555555544 39999999999
Q ss_pred CCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEee
Q 006566 192 FADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT 238 (640)
Q Consensus 192 ~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGv 238 (640)
.|.-. .+.++.+.|+++|+++=++.
T Consensus 295 ~GGit----------------------~~~kia~~A~~~gi~~~~h~ 319 (395)
T cd03323 295 WGGMR----------------------GSVRVAQVCETWGLGWGMHS 319 (395)
T ss_pred ccCHH----------------------HHHHHHHHHHHcCCeEEEec
Confidence 98744 27889999999999984443
No 203
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=70.42 E-value=76 Score=31.54 Aligned_cols=156 Identities=13% Similarity=0.170 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHcCCCEEEEec------CCHHHHHHHHHHHHHhhcCCCCcceeeccCCC-HHHHHHHhhh-cCceeeCC
Q 006566 118 AGTVEEVMRIADQGADLVRITV------QGKREADACFEIKNSLVQKNYNIPLVADIHFA-PSVALRVAEC-FDKIRVNP 189 (640)
Q Consensus 118 ~atv~Qi~rl~~aGceiVRvtv------p~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~-~~~Al~Aa~~-v~KVRINP 189 (640)
...++-++.+.+.|++.+=|.- ......+.+++|++. +++|+.++-... +.-|..+++. +++|=|+=
T Consensus 29 ~dp~~~a~~~~~~g~d~l~v~dl~~~~~~~~~~~~~i~~i~~~-----~~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs 103 (234)
T cd04732 29 DDPVEVAKKWEEAGAKWLHVVDLDGAKGGEPVNLELIEEIVKA-----VGIPVQVGGGIRSLEDIERLLDLGVSRVIIGT 103 (234)
T ss_pred CCHHHHHHHHHHcCCCEEEEECCCccccCCCCCHHHHHHHHHh-----cCCCEEEeCCcCCHHHHHHHHHcCCCEEEECc
Confidence 3445566667789998887762 233345667777774 789999987754 6777777777 89987665
Q ss_pred CCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCCChHHHHHHHHHHHHHH
Q 006566 190 GNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARIC 269 (640)
Q Consensus 190 GN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGdtp~gMVeSAle~~~i~ 269 (640)
..+.+.+ .+.++++.+.+..+.+-|.+..|.+-.+ |.. ...-.+..|+++.+
T Consensus 104 ~~l~dp~----------------------~~~~i~~~~g~~~i~~sid~~~~~~~~~-----~~~-~~~~~~~~~~~~~~ 155 (234)
T cd04732 104 AAVKNPE----------------------LVKELLKEYGGERIVVGLDAKDGKVATK-----GWL-ETSEVSLEELAKRF 155 (234)
T ss_pred hHHhChH----------------------HHHHHHHHcCCceEEEEEEeeCCEEEEC-----CCe-eecCCCHHHHHHHH
Confidence 5554422 1333333332222333344444433211 110 01123557889999
Q ss_pred HHCCCCcEEEE-EEeCC--hhhHHHHHHHHHHHHHHcCCCcceEE
Q 006566 270 RKLDFHNFLFS-MKASN--PVVMVQAYRLLVAEMYVHGWDYPLHL 311 (640)
Q Consensus 270 e~~~F~diviS-mKsSn--~~~mV~AyRlL~~~m~~~g~dyPLHL 311 (640)
++.|+.-+++. +..+. ...-.+..+.+.+. .+.|+-.
T Consensus 156 ~~~ga~~iii~~~~~~g~~~g~~~~~i~~i~~~-----~~ipvi~ 195 (234)
T cd04732 156 EELGVKAIIYTDISRDGTLSGPNFELYKELAAA-----TGIPVIA 195 (234)
T ss_pred HHcCCCEEEEEeecCCCccCCCCHHHHHHHHHh-----cCCCEEE
Confidence 99999988775 32111 01124555666665 5778644
No 204
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=70.24 E-value=87 Score=29.08 Aligned_cols=76 Identities=11% Similarity=0.185 Sum_probs=36.1
Q ss_pred CCHHHHHHHHHHHHHcCCCE---EEEecCC----HHHHHHHHHHHHHhhcC-----CCCcceeec-cCCCHHHHHHHhhh
Q 006566 115 KDVAGTVEEVMRIADQGADL---VRITVQG----KREADACFEIKNSLVQK-----NYNIPLVAD-IHFAPSVALRVAEC 181 (640)
Q Consensus 115 ~Dv~atv~Qi~rl~~aGcei---VRvtvp~----~~~A~~l~~I~~~L~~~-----g~~iPLVAD-IHF~~~~Al~Aa~~ 181 (640)
.+++...+++.++.+.|... -.+...+ ...-+.+.+|.+.+++. +..+.+... .+.+++.+..-.+.
T Consensus 30 ~~~e~i~~~~~~~~~~~~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tn~~~~~~~~~~~l~~~ 109 (216)
T smart00729 30 RYLEALVREIELLAEKGEKEILVGTVFIGGGTPTLLSPEQLEELLEAIREILGLADDVEITIETRPGTLTEELLEALKEA 109 (216)
T ss_pred HHHHHHHHHHHHHHhcccCCcceeEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCcccCCHHHHHHHHHc
Confidence 45677777777776666532 2332222 11111233444433333 234555554 34555555555554
Q ss_pred -cCceeeCCC
Q 006566 182 -FDKIRVNPG 190 (640)
Q Consensus 182 -v~KVRINPG 190 (640)
++.|.|..-
T Consensus 110 ~~~~i~isl~ 119 (216)
T smart00729 110 GVNRVSLGVQ 119 (216)
T ss_pred CCCeEEEecc
Confidence 445555443
No 205
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=70.20 E-value=33 Score=37.12 Aligned_cols=110 Identities=11% Similarity=0.014 Sum_probs=78.3
Q ss_pred cCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCCCcceeeccCC-CHHHHH
Q 006566 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHF-APSVAL 176 (640)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~iPLVADIHF-~~~~Al 176 (640)
+|.+-.++|= .| ..-|.+.+++-+++|.+.|...+==-+| ..+.+.+..++++ +++|+.+|=++ ++.-+.
T Consensus 160 ~G~~~~l~vD--aN-~~w~~~~A~~~~~~l~~~~l~~iEeP~~-~~d~~~~~~L~~~-----~~~pia~gE~~~~~~~~~ 230 (361)
T cd03322 160 FGFEFHLLHD--VH-HRLTPNQAARFGKDVEPYRLFWMEDPTP-AENQEAFRLIRQH-----TATPLAVGEVFNSIWDWQ 230 (361)
T ss_pred cCCCceEEEE--CC-CCCCHHHHHHHHHHhhhcCCCEEECCCC-cccHHHHHHHHhc-----CCCCEEeccCCcCHHHHH
Confidence 5666677662 12 2255677777778888877766542232 2456777777774 88999999875 566666
Q ss_pred HHhhh--cCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEee
Q 006566 177 RVAEC--FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT 238 (640)
Q Consensus 177 ~Aa~~--v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGv 238 (640)
..++. ++-+.+.|+-.|.-.+ +.++.+.|+++|+++-++.
T Consensus 231 ~~i~~~a~di~~~d~~~~GGit~----------------------~~~ia~~A~~~gi~~~~h~ 272 (361)
T cd03322 231 NLIQERLIDYIRTTVSHAGGITP----------------------ARKIADLASLYGVRTGWHG 272 (361)
T ss_pred HHHHhCCCCEEecCccccCCHHH----------------------HHHHHHHHHHcCCeeeccC
Confidence 66554 9999999998887442 7889999999999997654
No 206
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=70.18 E-value=23 Score=38.06 Aligned_cols=58 Identities=12% Similarity=0.124 Sum_probs=45.8
Q ss_pred CCCcceeeccCC-CHHHHHHHhh--hcCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEE
Q 006566 159 NYNIPLVADIHF-APSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVR 235 (640)
Q Consensus 159 g~~iPLVADIHF-~~~~Al~Aa~--~v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIR 235 (640)
.+++|+.+|=+. ++.-....++ .++=|++.|+-.|.-.+ ..++.+.|+++|+++=
T Consensus 225 ~~~~pia~dEs~~~~~~~~~~~~~~~~d~v~~d~~~~GGit~----------------------~~~~~~lA~~~gi~~~ 282 (352)
T cd03325 225 RTTIPIATGERLFSRWDFKELLEDGAVDIIQPDISHAGGITE----------------------LKKIAAMAEAYDVALA 282 (352)
T ss_pred hCCCCEEecccccCHHHHHHHHHhCCCCEEecCccccCCHHH----------------------HHHHHHHHHHcCCcEe
Confidence 478999999774 6776666655 48999999999987443 7789999999999985
Q ss_pred Eee
Q 006566 236 IGT 238 (640)
Q Consensus 236 IGv 238 (640)
+|.
T Consensus 283 ~h~ 285 (352)
T cd03325 283 PHC 285 (352)
T ss_pred ccC
Confidence 544
No 207
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=70.17 E-value=8.9 Score=41.15 Aligned_cols=84 Identities=14% Similarity=0.224 Sum_probs=59.7
Q ss_pred cCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEec--CC-HHHHHHHHHHHHHhhcCCCCcceeeccCC--CH
Q 006566 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITV--QG-KREADACFEIKNSLVQKNYNIPLVADIHF--AP 172 (640)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~rl~~aGceiVRvtv--p~-~~~A~~l~~I~~~L~~~g~~iPLVADIHF--~~ 172 (640)
+||.. =+|....+....+.+..++|+.++.+.|..-+.+-+ ++ .++.+.++.||+. -|-++.|..|-|- ++
T Consensus 124 lGg~~-~~v~~y~s~~~~~~~~~~~~a~~~~~~Gf~~~KiKvg~~~~~~d~~~v~air~~---~g~~~~l~vDaN~~~~~ 199 (355)
T cd03321 124 LGGNP-RPVQAYDSHGLDGAKLATERAVTAAEEGFHAVKTKIGYPTADEDLAVVRSIRQA---VGDGVGLMVDYNQSLTV 199 (355)
T ss_pred hCCCC-CCeeEEEeCCCChHHHHHHHHHHHHHhhhHHHhhhcCCCChHhHHHHHHHHHHh---hCCCCEEEEeCCCCcCH
Confidence 46643 356666554555788899999999999999988877 34 3578888888885 3557999999884 45
Q ss_pred HHHHHHhhhcCce
Q 006566 173 SVALRVAECFDKI 185 (640)
Q Consensus 173 ~~Al~Aa~~v~KV 185 (640)
.-|+..++.+++.
T Consensus 200 ~~A~~~~~~l~~~ 212 (355)
T cd03321 200 PEAIERGQALDQE 212 (355)
T ss_pred HHHHHHHHHHHcC
Confidence 5555555555543
No 208
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=69.86 E-value=28 Score=35.83 Aligned_cols=58 Identities=17% Similarity=0.307 Sum_probs=44.0
Q ss_pred CCcceeeccCC-CHHHHHHHhh--hcCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEE
Q 006566 160 YNIPLVADIHF-APSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRI 236 (640)
Q Consensus 160 ~~iPLVADIHF-~~~~Al~Aa~--~v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRI 236 (640)
+++|+.+|=++ ++.-....++ .++=|.+-|...|.-.+ ...+++.|+++|+++=+
T Consensus 175 ~~~PIa~dEs~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~----------------------~~~i~~~a~~~gi~~~~ 232 (263)
T cd03320 175 AGVPIALDESLRRLDDPLALAAAGALGALVLKPALLGGPRA----------------------LLELAEEARARGIPAVV 232 (263)
T ss_pred cCCCeeeCCccccccCHHHHHhcCCCCEEEECchhcCCHHH----------------------HHHHHHHHHHcCCCEEE
Confidence 67999999654 3333333444 58889999999987443 78899999999999988
Q ss_pred eeC
Q 006566 237 GTN 239 (640)
Q Consensus 237 GvN 239 (640)
|..
T Consensus 233 ~~~ 235 (263)
T cd03320 233 SSA 235 (263)
T ss_pred Ecc
Confidence 853
No 209
>cd06808 PLPDE_III Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes. The fold type III PLP-dependent enzyme family is predominantly composed of two-domain proteins with similarity to bacterial alanine racemases (AR) including eukaryotic ornithine decarboxylases (ODC), prokaryotic diaminopimelate decarboxylases (DapDC), biosynthetic arginine decarboxylases (ADC), carboxynorspermidine decarboxylases (CANSDC), and similar proteins. AR-like proteins contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. These proteins play important roles in the biosynthesis of amino acids and polyamine. The family also includes the single-domain YBL036c-like proteins, which contain a single PLP-binding TIM-barrel domain without any N- or C-terminal extensions. Due to the lack of a second domain, these p
Probab=69.83 E-value=1.1e+02 Score=29.48 Aligned_cols=85 Identities=15% Similarity=0.196 Sum_probs=42.4
Q ss_pred HHHHHHHHHHcCCeEEEe--eCCCCCcHhHHHHhCCChHHHHHHHHHHHHHHHHCCCCcEE--EEEEeC---Chh---hH
Q 006566 220 FSPLVEKCKKYGRAVRIG--TNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFL--FSMKAS---NPV---VM 289 (640)
Q Consensus 220 f~~lV~~~Ke~g~aIRIG--vNhGSLs~ril~ryGdtp~gMVeSAle~~~i~e~~~F~div--iSmKsS---n~~---~m 289 (640)
+..+.+.|++.|..++|+ +|.|- -++|+|-+|+. +.+.++.+.+.+.-++. .+-=+| +.. ..
T Consensus 93 l~~l~~~~~~~~~~~~v~lrv~~g~----~~~R~G~~~~e----~~~~~~~i~~~~~l~l~Gl~~H~~~~~~~~~~~~~~ 164 (211)
T cd06808 93 LEKLEEAALKAGPPARVLLRIDTGD----ENGKFGVRPEE----LKALLERAKELPHLRLVGLHTHFGSADEDYSPFVEA 164 (211)
T ss_pred HHHHHHHHHHhCCCceEEEEEcCCC----CCCCCCCCHHH----HHHHHHHHHhCCCCcEEEEEEecCCCCCCHHHHHHH
Confidence 444455555444433332 34443 46889988743 45566666665522221 121222 122 22
Q ss_pred HHHHHHHHHHHHHcCCCcce-EEE
Q 006566 290 VQAYRLLVAEMYVHGWDYPL-HLG 312 (640)
Q Consensus 290 V~AyRlL~~~m~~~g~dyPL-HLG 312 (640)
++.++.+.+++.+.|++.+. |+|
T Consensus 165 ~~~~~~~~~~l~~~~~~~~~i~~G 188 (211)
T cd06808 165 LSRFVAALDQLGELGIDLEQLSIG 188 (211)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEC
Confidence 44555566777776765443 765
No 210
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=69.54 E-value=71 Score=31.96 Aligned_cols=153 Identities=16% Similarity=0.208 Sum_probs=95.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEE--EEecCCHHHHHHHHHHHHHhhcCCCCcceeecc-----CCCHHH----------H
Q 006566 113 DTKDVAGTVEEVMRIADQGADLV--RITVQGKREADACFEIKNSLVQKNYNIPLVADI-----HFAPSV----------A 175 (640)
Q Consensus 113 ~T~Dv~atv~Qi~rl~~aGceiV--Rvtvp~~~~A~~l~~I~~~L~~~g~~iPLVADI-----HF~~~~----------A 175 (640)
.....+.+++.+.++=-.|.|+. +.-.++.++ +.++++.|.+.|..+...+=. +-++.. +
T Consensus 13 ~~~~l~~~l~~~~~~G~~gvEi~~~~~~~~~~~~---~~~l~~~l~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (274)
T COG1082 13 GELPLEEILRKAAELGFDGVELSPGDLFPADYKE---LAELKELLADYGLEITSLAPFSNNLLSPDEEEREEALEELKRA 89 (274)
T ss_pred CCCCHHHHHHHHHHhCCCeEecCCcccCCchhhh---HHHHHHHHHHcCcEEEeecccCCCcCCCchhhHHHHHHHHHHH
Confidence 35666777777776666666666 555555444 566666666666655443333 333320 2
Q ss_pred HH-Hhhh-cCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCC
Q 006566 176 LR-VAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGD 253 (640)
Q Consensus 176 l~-Aa~~-v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGd 253 (640)
++ |.+. ++.|-+=||.+..... .. -+...+ ++..+.+.++.+.|+++|+.+.+.-+ .
T Consensus 90 i~~a~~lg~~~vv~~~g~~~~~~~-~~---~~~~~~----~~~~~~l~~l~~~a~~~~i~l~~e~~-------------~ 148 (274)
T COG1082 90 IELAKELGAKVVVVHPGLGAGADD-PD---SPEEAR----ERWAEALEELAEIAEELGIGLALENH-------------H 148 (274)
T ss_pred HHHHHHcCCCeEEeecccCCcCCC-CC---CCcccH----HHHHHHHHHHHHHHHHhCCceEEeec-------------C
Confidence 33 4444 6778788998877543 11 122223 56677788899999999877766641 1
Q ss_pred ChHHHHHHHHHHHHHHHHCCCCcEEEEEEeCChhhH
Q 006566 254 SPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVM 289 (640)
Q Consensus 254 tp~gMVeSAle~~~i~e~~~F~diviSmKsSn~~~m 289 (640)
.|..++++.-..++++.+.+=+++.+-+=.++....
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~v~~~lD~~H~~~~ 184 (274)
T COG1082 149 HPGNVVETGADALDLLREVDSPNVGLLLDTGHAFFA 184 (274)
T ss_pred CccceeecCHHHHHHHHhcCCCceEEEEecCchhhc
Confidence 133456666557888888888899999888886544
No 211
>PRK12653 fructose-6-phosphate aldolase; Reviewed
Probab=69.50 E-value=55 Score=33.78 Aligned_cols=81 Identities=20% Similarity=0.198 Sum_probs=61.0
Q ss_pred cCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHH
Q 006566 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALR 177 (640)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~ 177 (640)
+|+..|+.+|.. ..|.++.++|.++|.+.+-.++ |-+|--.+ -++.|+. |.++|+++-+=+ =|++.=|+.
T Consensus 50 ~~~~~~v~~Qv~----~~d~e~mi~ea~~l~~~~~ni~-IKIP~T~~--Gl~A~~~-L~~~GI~vn~T~--vfs~~Qa~~ 119 (220)
T PRK12653 50 MGGQGRLFAQVM----ATTAEGMVNDARKLRSIIADIV-VKVPVTAE--GLAAIKM-LKAEGIPTLGTA--VYGAAQGLL 119 (220)
T ss_pred hCCCCcEEEEEe----cCCHHHHHHHHHHHHHhCCCEE-EEeCCCHH--HHHHHHH-HHHcCCCeeEEE--ecCHHHHHH
Confidence 456679999996 4789999999999999997754 77887766 4666664 777787665444 699999999
Q ss_pred Hhhh-cCceeeC
Q 006566 178 VAEC-FDKIRVN 188 (640)
Q Consensus 178 Aa~~-v~KVRIN 188 (640)
|++. ++=|-..
T Consensus 120 Aa~aGa~yIspy 131 (220)
T PRK12653 120 SALAGAEYVAPY 131 (220)
T ss_pred HHhcCCcEEEee
Confidence 9887 6555443
No 212
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=69.40 E-value=41 Score=38.44 Aligned_cols=81 Identities=22% Similarity=0.290 Sum_probs=61.0
Q ss_pred HHHHHHHcCCeEEEeeCCCCCcHhHHHHhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEEeCChhhHHHHHHHHHHHHHH
Q 006566 223 LVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYV 302 (640)
Q Consensus 223 lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGdtp~gMVeSAle~~~i~e~~~F~diviSmKsSn~~~mV~AyRlL~~~m~~ 302 (640)
.++..|+.|+- ||-+|-=|.+++++...|-. .-++.+.+-++.+++.||.+|.+.+=.-=|..+.+.++...+.+.+
T Consensus 271 ~L~~Lk~~Gv~-RISIGvQS~~d~vLk~igR~--ht~e~v~~ai~~ar~~Gf~~In~DLI~GLPgEt~ed~~~tl~~l~~ 347 (488)
T PRK08207 271 KLEVLKKYGVD-RISINPQTMNDETLKAIGRH--HTVEDIIEKFHLAREMGFDNINMDLIIGLPGEGLEEVKHTLEEIEK 347 (488)
T ss_pred HHHHHHhcCCC-eEEEcCCcCCHHHHHHhCCC--CCHHHHHHHHHHHHhCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 46788889976 99999999999999999842 1246677788899999998776666555556667777766666666
Q ss_pred cCCC
Q 006566 303 HGWD 306 (640)
Q Consensus 303 ~g~d 306 (640)
.+.+
T Consensus 348 L~pd 351 (488)
T PRK08207 348 LNPE 351 (488)
T ss_pred cCcC
Confidence 6654
No 213
>cd06812 PLPDE_III_DSD_D-TA_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 1. This subfamily is composed of uncharacterized bacterial proteins with similarity to eukaryotic D-serine dehydratases (DSD) and D-threonine aldolases (D-TA). DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. DSD and D-TA are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on their similarity to AR, it is possible mem
Probab=69.34 E-value=1.3e+02 Score=32.21 Aligned_cols=153 Identities=19% Similarity=0.166 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhhcCc-eeeCCCCCCchhh
Q 006566 119 GTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDK-IRVNPGNFADRRA 197 (640)
Q Consensus 119 atv~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~v~K-VRINPGN~~d~~k 197 (640)
.+.+=++.+.++||. +++|-+..||+.+. +.|++-++++-- ..|.-...+++..++ +++.+ + .|...
T Consensus 42 ~~~~i~~~~~~~G~~--~~~vas~~Ea~~~~-------~aG~~~il~~~~-~~~~~~~~~~~l~~~~~~~~~-~-vds~~ 109 (374)
T cd06812 42 KSLEVARRLLAAGAS--PATVSTLKEAEAFA-------EAGYRDILYAVG-IAPAKLPRVLALRRQGVNLTI-L-LDSVE 109 (374)
T ss_pred CCHHHHHHHHhCCCC--cEEEccHHHHHHHH-------HcCCCeeEEeCC-CCHHHHHHHHHHHhcCCceEE-E-ECCHH
Confidence 455566677788974 68888999998764 347765555543 233332334443332 22111 1 12111
Q ss_pred hccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEE--eeCCCCCcHhHHHHhCCChHHHHHHHHHHHHHHHHCCCC
Q 006566 198 QFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRI--GTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFH 275 (640)
Q Consensus 198 ~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRI--GvNhGSLs~ril~ryGdtp~gMVeSAle~~~i~e~~~F~ 275 (640)
.+..+-+.|++.|+++|| =+|.| |.|+|-.|+. +.+.+.++.+...+.+
T Consensus 110 ---------------------~l~~l~~~a~~~~~~~~V~l~vd~G------~~R~Gv~~~~--~~~~~l~~~i~~~~l~ 160 (374)
T cd06812 110 ---------------------QAQAVAAFSRQHGVRFPVLIEIDCD------GHRGGIAPDS--DALLEIARILHDGGAE 160 (374)
T ss_pred ---------------------HHHHHHHHHHHcCCceEEEEEeCCC------CCcCCCCCCc--HHHHHHHHHHhcCCce
Confidence 144455566666655443 34556 4788965531 2355565555432211
Q ss_pred cEEEEE------EeCChhhHHHH-------HHHHHHHHHHcCCCcc-eEEE
Q 006566 276 NFLFSM------KASNPVVMVQA-------YRLLVAEMYVHGWDYP-LHLG 312 (640)
Q Consensus 276 diviSm------KsSn~~~mV~A-------yRlL~~~m~~~g~dyP-LHLG 312 (640)
=.=|.. -..|...+.+. ...+++++.+.|+.-+ +|+|
T Consensus 161 l~Gi~~H~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~v~~G 211 (374)
T cd06812 161 LRGVLTHAGESYACRTPEALAAAAEQERAAAVRAAERLRAAGLPCPVVSVG 211 (374)
T ss_pred EEEEEccCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCEEeec
Confidence 111110 11243333222 3346666777777654 4777
No 214
>PRK07094 biotin synthase; Provisional
Probab=68.93 E-value=1.4e+02 Score=31.46 Aligned_cols=109 Identities=10% Similarity=0.110 Sum_probs=70.7
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCC--HHHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhhcCceeeCCCCC
Q 006566 115 KDVAGTVEEVMRIADQGADLVRITVQG--KREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNF 192 (640)
Q Consensus 115 ~Dv~atv~Qi~rl~~aGceiVRvtvp~--~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~v~KVRINPGN~ 192 (640)
.+.+..++.++.+.+.|..-|-++.-+ .-..+.+.+|.+.+++. .++ ++.+++|..
T Consensus 70 ls~eei~~~~~~~~~~g~~~i~l~gG~~~~~~~~~l~~l~~~i~~~-~~l---------------------~i~~~~g~~ 127 (323)
T PRK07094 70 LSPEEILECAKKAYELGYRTIVLQSGEDPYYTDEKIADIIKEIKKE-LDV---------------------AITLSLGER 127 (323)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCCCCCCHHHHHHHHHHHHcc-CCc---------------------eEEEecCCC
Confidence 467888899999999999988887321 11234455555555443 222 134455532
Q ss_pred CchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCCChHHHHHHHHHHHHHHHHC
Q 006566 193 ADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKL 272 (640)
Q Consensus 193 ~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGdtp~gMVeSAle~~~i~e~~ 272 (640)
- .+.++..|+.|.- |+-++.=|.+++++++++.+ .-.+..++-++.+.+.
T Consensus 128 ~---------------------------~e~l~~Lk~aG~~-~v~~glEs~~~~~~~~i~~~--~s~~~~~~~i~~l~~~ 177 (323)
T PRK07094 128 S---------------------------YEEYKAWKEAGAD-RYLLRHETADKELYAKLHPG--MSFENRIACLKDLKEL 177 (323)
T ss_pred C---------------------------HHHHHHHHHcCCC-EEEeccccCCHHHHHHhCCC--CCHHHHHHHHHHHHHc
Confidence 1 2345666777754 56677778889999998742 3357778888999999
Q ss_pred CCC
Q 006566 273 DFH 275 (640)
Q Consensus 273 ~F~ 275 (640)
|+.
T Consensus 178 Gi~ 180 (323)
T PRK07094 178 GYE 180 (323)
T ss_pred CCe
Confidence 983
No 215
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=68.58 E-value=65 Score=34.36 Aligned_cols=56 Identities=11% Similarity=0.159 Sum_probs=45.5
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCCCcceeeccCCCHHH
Q 006566 115 KDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSV 174 (640)
Q Consensus 115 ~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~ 174 (640)
.+.+..++|+.++.+.|...+.+-+....+.+.++.|++.+ + ++.|..|-|-.+..
T Consensus 131 ~~~~~~~~~a~~~~~~Gf~~~KiKv~~~~d~~~v~~vr~~~---~-~~~l~vDaN~~~~~ 186 (324)
T TIGR01928 131 ANDEQMLKQIESLKATGYKRIKLKITPQIMHQLVKLRRLRF---P-QIPLVIDANESYDL 186 (324)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEEeCCchhHHHHHHHHHhC---C-CCcEEEECCCCCCH
Confidence 46688999999999999999999985556778888888865 2 58899999865544
No 216
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=68.32 E-value=42 Score=36.50 Aligned_cols=117 Identities=14% Similarity=0.216 Sum_probs=76.7
Q ss_pred cCCHHHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhhcCceeeCCCCCCchhhhccccccchHHHHHHHhhhHh
Q 006566 139 VQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEE 218 (640)
Q Consensus 139 vp~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~ 218 (640)
+|+.-..+.|.+|-+.+++. | + .++ .+=.||..+-.
T Consensus 68 TPs~l~~~~l~~ll~~i~~~----~---~-----------~ei--t~E~~P~~~~~------------------------ 103 (370)
T PRK06294 68 TPSLVPPALIQDILKTLEAP----H---A-----------TEI--TLEANPENLSE------------------------ 103 (370)
T ss_pred ccccCCHHHHHHHHHHHHhC----C---C-----------CeE--EEEeCCCCCCH------------------------
Confidence 67777778888887776542 0 0 122 02359998832
Q ss_pred hHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCC-ChHHHHHHHHHHHHHHHHCCCCcEEEEEEeCChhhHHHHHHHHH
Q 006566 219 VFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLV 297 (640)
Q Consensus 219 ~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGd-tp~gMVeSAle~~~i~e~~~F~diviSmKsSn~~~mV~AyRlL~ 297 (640)
+.++..|+.|+- ||-+.-=|++++++.+.|- .. ++.+++-++.+++.||.++.+-+=.-=|-.+.+.++.-.
T Consensus 104 ---~~l~~l~~~G~n-rislGvQS~~~~~L~~l~R~~~---~~~~~~ai~~~~~~g~~~v~~Dli~GlPgqt~~~~~~~l 176 (370)
T PRK06294 104 ---SYIRALALTGIN-RISIGVQTFDDPLLKLLGRTHS---SSKAIDAVQECSEHGFSNLSIDLIYGLPTQSLSDFIVDL 176 (370)
T ss_pred ---HHHHHHHHCCCC-EEEEccccCCHHHHHHcCCCCC---HHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHH
Confidence 246788888864 6666567888999999983 22 344555667788999998777654443456777777777
Q ss_pred HHHHHcCCC
Q 006566 298 AEMYVHGWD 306 (640)
Q Consensus 298 ~~m~~~g~d 306 (640)
+.+.+.+.+
T Consensus 177 ~~~~~l~~~ 185 (370)
T PRK06294 177 HQAITLPIT 185 (370)
T ss_pred HHHHccCCC
Confidence 666555533
No 217
>cd06824 PLPDE_III_Yggs_like Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins. This subfamily contains mainly uncharacterized proteobacterial proteins with similarity to the hypothetical Escherichia coli protein YggS, a homolog of yeast YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. Like yeast YBL036c, Yggs is a single domain monomeric protein with a typical TIM-barrel fold. Its structure, which shows a covalently-bound PLP cofactor, is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. YggS has not been characterized extensively and its biological function is still unkonwn.
Probab=68.31 E-value=61 Score=32.68 Aligned_cols=156 Identities=15% Similarity=0.119 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCC-CCcceeeccCCCH-HHHHHHhhhcCceeeCCCCCCchh
Q 006566 119 GTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKN-YNIPLVADIHFAP-SVALRVAECFDKIRVNPGNFADRR 196 (640)
Q Consensus 119 atv~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g-~~iPLVADIHF~~-~~Al~Aa~~v~KVRINPGN~~d~~ 196 (640)
-.+.++.+..++||+. +.|-+.+||.. +. ..||+.| +..|++. ++.| +....+.++ .+.|- .|
T Consensus 36 hG~~~v~~~~~~G~~~--fgva~~~Ea~~--k~-~~Lr~~g~~~~~~lg--~~~~~~~~~~~~~~----~~~~~--I~-- 100 (224)
T cd06824 36 KPADAIREAYAAGQRH--FGENYVQEALE--KI-EALRDLQDIEWHFIG--PIQSNKTKLIAENF----DWVHS--VD-- 100 (224)
T ss_pred CCHHHHHHHHHcCCcc--cCcChHHHHHH--HH-HHhccCCCeeEEEEc--CchhhhHHHHHhhC----CEEEe--cC--
Confidence 3445566556899985 78888888753 22 2355554 4444444 4566 333333322 22221 12
Q ss_pred hhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEE--eeCCCCCcHhHHHHhCCChHHHHHHHHHHHHHHHHCC-
Q 006566 197 AQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRI--GTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLD- 273 (640)
Q Consensus 197 k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRI--GvNhGSLs~ril~ryGdtp~gMVeSAle~~~i~e~~~- 273 (640)
+.++ +..+-+.|++.|.++.| =+|.|.= |+|+|-+|+. +.++++.+.++.
T Consensus 101 ---------s~~~----------~~~l~~~a~~~g~~~~v~l~id~~~G----m~R~Gi~~~~----~~~~~~~i~~~~~ 153 (224)
T cd06824 101 ---------RLKI----------AKRLNDQRPAGLPPLNVCIQVNISGE----DSKSGVAPED----AAELAEAISQLPN 153 (224)
T ss_pred ---------CHHH----------HHHHHHHHHhcCCCCcEEEEEEcCCC----CCCCCCCHHH----HHHHHHHHhcCCC
Confidence 1222 34444566666654443 4444221 6788987743 555655555432
Q ss_pred CC-cEEEEEEe--CChhhHHHHHHHH---HHHHHHcCCCcc-eEEEeecC
Q 006566 274 FH-NFLFSMKA--SNPVVMVQAYRLL---VAEMYVHGWDYP-LHLGVTEA 316 (640)
Q Consensus 274 F~-diviSmKs--Sn~~~mV~AyRlL---~~~m~~~g~dyP-LHLGVTEA 316 (640)
.. .=+.+.=+ .|+..-.+.++.+ .+++.+.|+..+ +|+|-|-+
T Consensus 154 l~l~Gl~tH~a~~~~~~~q~~~f~~~~~~~~~l~~~~~~~~~is~gnS~~ 203 (224)
T cd06824 154 LRLRGLMAIPAPTDDEAAQRAAFKRLRQLFDQLKKQYPDLDTLSMGMSGD 203 (224)
T ss_pred CcEEEEEEeCCCCCChHHHHHHHHHHHHHHHHHHhhCCCCCEEeCcCcHh
Confidence 11 11233322 2233334556555 466666675433 48886543
No 218
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=68.18 E-value=57 Score=33.87 Aligned_cols=151 Identities=16% Similarity=0.188 Sum_probs=91.3
Q ss_pred CceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCH--HHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHh
Q 006566 102 HPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGK--READACFEIKNSLVQKNYNIPLVADIHFAPSVALRVA 179 (640)
Q Consensus 102 ~PI~VQSMt~t~T~Dv~atv~Qi~rl~~aGceiVRvtvp~~--~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa 179 (640)
-|+-|.=|.+. --..+..++++||++|=+-+-.. .-.+.|..||+ .|...=|+=.-+=.......-+
T Consensus 60 ~~~DvHLMv~~-------P~~~i~~~~~aGad~it~H~Ea~~~~~~~~i~~Ik~----~G~kaGlalnP~T~~~~l~~~l 128 (229)
T PRK09722 60 KPLDVHLMVTD-------PQDYIDQLADAGADFITLHPETINGQAFRLIDEIRR----AGMKVGLVLNPETPVESIKYYI 128 (229)
T ss_pred CCeEEEEEecC-------HHHHHHHHHHcCCCEEEECccCCcchHHHHHHHHHH----cCCCEEEEeCCCCCHHHHHHHH
Confidence 56777777763 45578899999999887766532 23455566665 4776544433332333333344
Q ss_pred hhcCcee---eCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCCChH
Q 006566 180 ECFDKIR---VNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPR 256 (640)
Q Consensus 180 ~~v~KVR---INPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGdtp~ 256 (640)
..+|.|= +|||.-|.+ |.. ..-+|++++-+..+++|..+.|.|-.| ++.
T Consensus 129 ~~vD~VLvMsV~PGf~GQ~---fi~-------------~~l~KI~~lr~~~~~~~~~~~IeVDGG-I~~----------- 180 (229)
T PRK09722 129 HLLDKITVMTVDPGFAGQP---FIP-------------EMLDKIAELKALRERNGLEYLIEVDGS-CNQ----------- 180 (229)
T ss_pred HhcCEEEEEEEcCCCcchh---ccH-------------HHHHHHHHHHHHHHhcCCCeEEEEECC-CCH-----------
Confidence 4566654 899987652 432 223445556666678888899999433 433
Q ss_pred HHHHHHHHHHHHHHHCCCCcEEEE---E-E-eCChhhHHHHHHHHHH
Q 006566 257 GMVESAFEFARICRKLDFHNFLFS---M-K-ASNPVVMVQAYRLLVA 298 (640)
Q Consensus 257 gMVeSAle~~~i~e~~~F~diviS---m-K-sSn~~~mV~AyRlL~~ 298 (640)
+.+.-|.+.|-+-+|.. + + ..|+..+++..|...+
T Consensus 181 -------~~i~~~~~aGad~~V~Gss~iF~~~~d~~~~i~~l~~~~~ 220 (229)
T PRK09722 181 -------KTYEKLMEAGADVFIVGTSGLFNLDEDIDEAWDIMTAQIE 220 (229)
T ss_pred -------HHHHHHHHcCCCEEEEChHHHcCCCCCHHHHHHHHHHHHH
Confidence 24556677777766654 2 4 3466667777665443
No 219
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=68.16 E-value=9.6 Score=43.57 Aligned_cols=68 Identities=25% Similarity=0.374 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHcCCCEEEEec-------------CCHHHHHHHHHHHHHh----hcCCCCcceeec--cCCCHHHHHHHh
Q 006566 119 GTVEEVMRIADQGADLVRITV-------------QGKREADACFEIKNSL----VQKNYNIPLVAD--IHFAPSVALRVA 179 (640)
Q Consensus 119 atv~Qi~rl~~aGceiVRvtv-------------p~~~~A~~l~~I~~~L----~~~g~~iPLVAD--IHF~~~~Al~Aa 179 (640)
.|.++.+.|++||||.|+|.. -+.-...++.++.+.. ++.|..+|+||| |++...++. |+
T Consensus 293 ~t~e~a~~li~aGAd~I~vg~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~gdi~K-Al 371 (502)
T PRK07107 293 VDREGFRYLAEAGADFVKVGIGGGSICITREQKGIGRGQATALIEVAKARDEYFEETGVYIPICSDGGIVYDYHMTL-AL 371 (502)
T ss_pred cCHHHHHHHHHcCCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchhHHHH-HH
Confidence 467889999999999997621 1234556666666643 334767999999 777777664 33
Q ss_pred hh-cCceee
Q 006566 180 EC-FDKIRV 187 (640)
Q Consensus 180 ~~-v~KVRI 187 (640)
-+ ++.|=|
T Consensus 372 a~GA~~vm~ 380 (502)
T PRK07107 372 AMGADFIML 380 (502)
T ss_pred HcCCCeeee
Confidence 33 555544
No 220
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=68.05 E-value=43 Score=34.47 Aligned_cols=77 Identities=10% Similarity=0.082 Sum_probs=55.7
Q ss_pred HHHHHHcCCe-EEEeeCCCCCcHh-HHHHhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEEeCChhhHHHHHHHHHHHHH
Q 006566 224 VEKCKKYGRA-VRIGTNHGSLSDR-IMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMY 301 (640)
Q Consensus 224 V~~~Ke~g~a-IRIGvNhGSLs~r-il~ryGdtp~gMVeSAle~~~i~e~~~F~diviSmKsSn~~~mV~AyRlL~~~m~ 301 (640)
|+.+++.|+. |||.+ |.|+. +..+++.|++..++.+.+.++.+++.|++ +.|++=-+. ....+-+..+++++.
T Consensus 75 v~~a~~~g~~~i~i~~---~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~-v~~~~~~~~-~~~~~~~~~~~~~~~ 149 (259)
T cd07939 75 IEAALRCGVTAVHISI---PVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLF-VSVGAEDAS-RADPDFLIEFAEVAQ 149 (259)
T ss_pred HHHHHhCCcCEEEEEE---ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCe-EEEeeccCC-CCCHHHHHHHHHHHH
Confidence 5677788776 77776 67765 44577889999999999999999999984 555553332 244677777777765
Q ss_pred HcCC
Q 006566 302 VHGW 305 (640)
Q Consensus 302 ~~g~ 305 (640)
+.|.
T Consensus 150 ~~G~ 153 (259)
T cd07939 150 EAGA 153 (259)
T ss_pred HCCC
Confidence 5553
No 221
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=67.83 E-value=56 Score=33.21 Aligned_cols=111 Identities=21% Similarity=0.275 Sum_probs=72.3
Q ss_pred CCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhh
Q 006566 101 EHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAE 180 (640)
Q Consensus 101 ~~PI~VQSMt~t~T~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~ 180 (640)
..||.+|-. ..|.+..++|.++|.+.+- .+=|-+|--. +.++.|++ |.++|+ ++=|=-=|++.=|+.|++
T Consensus 51 ~~~v~~qv~----~~~~e~~i~~a~~l~~~~~-~~~iKIP~T~--~gl~ai~~-L~~~gi--~v~~T~V~s~~Qa~~Aa~ 120 (211)
T cd00956 51 DGPVSAQVV----STDAEGMVAEARKLASLGG-NVVVKIPVTE--DGLKAIKK-LSEEGI--KTNVTAIFSAAQALLAAK 120 (211)
T ss_pred CCCEEEEEE----eCCHHHHHHHHHHHHHhCC-CEEEEEcCcH--hHHHHHHH-HHHcCC--ceeeEEecCHHHHHHHHH
Confidence 468999984 5789999999999999843 2334455544 56666664 666774 455555699999999999
Q ss_pred h-cCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEee
Q 006566 181 C-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT 238 (640)
Q Consensus 181 ~-v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGv 238 (640)
+ ++=|-..=|=+.|. ..... +.++++.+.++++|.+-+|=+
T Consensus 121 AGA~yvsP~vgR~~~~-------------g~dg~----~~i~~i~~~~~~~~~~tkil~ 162 (211)
T cd00956 121 AGATYVSPFVGRIDDL-------------GGDGM----ELIREIRTIFDNYGFDTKILA 162 (211)
T ss_pred cCCCEEEEecChHhhc-------------CCCHH----HHHHHHHHHHHHcCCCceEEe
Confidence 8 54332222222110 01111 346778899999998866643
No 222
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=67.51 E-value=26 Score=36.37 Aligned_cols=114 Identities=14% Similarity=0.147 Sum_probs=69.8
Q ss_pred CceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCH-HHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHH--
Q 006566 102 HPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGK-READACFEIKNSLVQKNYNIPLVADIHFAPSVALRV-- 178 (640)
Q Consensus 102 ~PI~VQSMt~t~T~Dv~atv~Qi~rl~~aGceiVRvtvp~~-~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~A-- 178 (640)
-|+-|-=|.+. --+.+..++++||++|=+-+-.. .-.+.|..||+ .|. |+-|=+=+||.--++.
T Consensus 69 ~~~DvHLMv~~-------P~~~i~~~~~aGad~It~H~Ea~~~~~~~l~~Ik~----~g~--~~kaGlalnP~Tp~~~i~ 135 (228)
T PRK08091 69 CFKDVHLMVRD-------QFEVAKACVAAGADIVTLQVEQTHDLALTIEWLAK----QKT--TVLIGLCLCPETPISLLE 135 (228)
T ss_pred CCEEEEeccCC-------HHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHH----CCC--CceEEEEECCCCCHHHHH
Confidence 47777778763 34577889999999887766532 23356666666 354 4445555665433333
Q ss_pred --hhhcCcee---eCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcH
Q 006566 179 --AECFDKIR---VNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSD 245 (640)
Q Consensus 179 --a~~v~KVR---INPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ 245 (640)
++.+|.|= +|||--|.+ |..- -++ |++++-+.-+++|.-..|.|-.| ++.
T Consensus 136 ~~l~~vD~VLiMtV~PGfgGQ~---f~~~---------~l~----KI~~lr~~~~~~~~~~~IeVDGG-I~~ 190 (228)
T PRK08091 136 PYLDQIDLIQILTLDPRTGTKA---PSDL---------ILD----RVIQVENRLGNRRVEKLISIDGS-MTL 190 (228)
T ss_pred HHHhhcCEEEEEEECCCCCCcc---ccHH---------HHH----HHHHHHHHHHhcCCCceEEEECC-CCH
Confidence 33466665 899976542 4321 233 44455566667888888999544 443
No 223
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=67.42 E-value=1.4e+02 Score=32.08 Aligned_cols=160 Identities=16% Similarity=0.139 Sum_probs=94.9
Q ss_pred CCCHHHHHHHHHHHHHcC-CCEEEEec--CC-HHHHHHHHHHHHHhhcCCCCcceeeccC--CCHHHHHHHhhhcCceee
Q 006566 114 TKDVAGTVEEVMRIADQG-ADLVRITV--QG-KREADACFEIKNSLVQKNYNIPLVADIH--FAPSVALRVAECFDKIRV 187 (640)
Q Consensus 114 T~Dv~atv~Qi~rl~~aG-ceiVRvtv--p~-~~~A~~l~~I~~~L~~~g~~iPLVADIH--F~~~~Al~Aa~~v~KVRI 187 (640)
..+.+..++++.+..+.| ..-+.+-+ ++ .++.+.++.+++.+ |.++-|..|-| |++.-|+..++.+++.
T Consensus 140 ~~~~~~~~~~~~~~~~~G~f~~~KiKvg~~~~~~d~~~v~avr~~~---g~~~~l~iDaN~~~~~~~A~~~~~~l~~~-- 214 (365)
T cd03318 140 SGDTERDIAEAEEMLEAGRHRRFKLKMGARPPADDLAHVEAIAKAL---GDRASVRVDVNQAWDESTAIRALPRLEAA-- 214 (365)
T ss_pred CCCHHHHHHHHHHHHhCCCceEEEEEeCCCChHHHHHHHHHHHHHc---CCCcEEEEECCCCCCHHHHHHHHHHHHhc--
Confidence 345677789999999999 99999876 23 45788888888863 55788999987 5666666666665554
Q ss_pred CCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcH--hHHHHhC-C--Ch----HHH
Q 006566 188 NPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSD--RIMSYYG-D--SP----RGM 258 (640)
Q Consensus 188 NPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~--ril~ryG-d--tp----~gM 258 (640)
|+-=| |+=.-. +.+..+-+.++..++||=.|=+.-++.+ +++.... | .+ .|=
T Consensus 215 ~~~~i-------EeP~~~------------~~~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~~~d~~~~d~~~~GG 275 (365)
T cd03318 215 GVELI-------EQPVPR------------ENLDGLARLRSRNRVPIMADESVSGPADAFELARRGAADVFSLKIAKSGG 275 (365)
T ss_pred Cccee-------eCCCCc------------ccHHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHhCCCCeEEEeecccCC
Confidence 32211 111000 0122334445567777766665555543 3333321 2 11 234
Q ss_pred HHHHHHHHHHHHHCCCCcEEEEEEeCChhhHHHHHHHHHHH
Q 006566 259 VESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAE 299 (640)
Q Consensus 259 VeSAle~~~i~e~~~F~diviSmKsSn~~~mV~AyRlL~~~ 299 (640)
+..+++.+++|+++|..=+.=|+=.|. +...+...|+..
T Consensus 276 it~~~~~~~~a~~~gi~~~~~~~~~s~--i~~aa~~hlaaa 314 (365)
T cd03318 276 LRRAQKVAAIAEAAGIALYGGTMLESS--IGTAASAHLFAT 314 (365)
T ss_pred HHHHHHHHHHHHHcCCceeecCcchhH--HHHHHHHHHHHh
Confidence 678889999999998763222233333 334555555554
No 224
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=67.17 E-value=11 Score=36.56 Aligned_cols=49 Identities=20% Similarity=0.338 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcC--CCCcceeec
Q 006566 118 AGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQK--NYNIPLVAD 167 (640)
Q Consensus 118 ~atv~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~--g~~iPLVAD 167 (640)
+...+++.++.++|+++|-+..++....+.++.+++ +.+. .+++||+.+
T Consensus 21 ~~~~~~~~~~~~~gv~~v~lr~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~ 71 (212)
T PRK00043 21 RDLLEVVEAALEGGVTLVQLREKGLDTRERLELARA-LKELCRRYGVPLIVN 71 (212)
T ss_pred ccHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHH-HHHHHHHhCCeEEEe
Confidence 457789999999999999999888766665555444 2222 577888874
No 225
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=66.96 E-value=54 Score=32.58 Aligned_cols=95 Identities=15% Similarity=0.204 Sum_probs=66.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCHH---HHHHHHHHHHHhhcCCCCcceeecc-CCCHHHHHHHhhh-cCceeeCCC
Q 006566 116 DVAGTVEEVMRIADQGADLVRITVQGKR---EADACFEIKNSLVQKNYNIPLVADI-HFAPSVALRVAEC-FDKIRVNPG 190 (640)
Q Consensus 116 Dv~atv~Qi~rl~~aGceiVRvtvp~~~---~A~~l~~I~~~L~~~g~~iPLVADI-HF~~~~Al~Aa~~-v~KVRINPG 190 (640)
+...-++..++.+++||+-+|+.+.+.. .-++++.|++. +++|++.-- =.++.-+..+.++ ++.|=+.==
T Consensus 29 ~~~~~~~~A~~~~~~GA~~l~v~~~~~~~~g~~~~~~~i~~~-----v~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~ 103 (217)
T cd00331 29 EDFDPVEIAKAYEKAGAAAISVLTEPKYFQGSLEDLRAVREA-----VSLPVLRKDFIIDPYQIYEARAAGADAVLLIVA 103 (217)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEEeCccccCCCHHHHHHHHHh-----cCCCEEECCeecCHHHHHHHHHcCCCEEEEeec
Confidence 3445678889999999999999754432 45677777774 579998642 2345567778787 887765221
Q ss_pred CCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEee
Q 006566 191 NFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT 238 (640)
Q Consensus 191 N~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGv 238 (640)
.+.. +.+.++++.|+.+|+-.-+.+
T Consensus 104 ~~~~-----------------------~~~~~~~~~~~~~g~~~~v~v 128 (217)
T cd00331 104 ALDD-----------------------EQLKELYELARELGMEVLVEV 128 (217)
T ss_pred cCCH-----------------------HHHHHHHHHHHHcCCeEEEEE
Confidence 1211 237788899999999887777
No 226
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=66.84 E-value=52 Score=35.06 Aligned_cols=88 Identities=16% Similarity=0.235 Sum_probs=58.9
Q ss_pred HHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCCCcceeeccCC-CHHHHHHHhh--hcCceeeCCCCCCchhhhc
Q 006566 123 EVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHF-APSVALRVAE--CFDKIRVNPGNFADRRAQF 199 (640)
Q Consensus 123 Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~iPLVADIHF-~~~~Al~Aa~--~v~KVRINPGN~~d~~k~F 199 (640)
.+++|++.+-+.+===++ .++.+.+.++++ .+++|+.+|=+. ++.-...+++ +++-+++.|...|.-.+
T Consensus 191 ~~~~l~~~~~~~iEeP~~-~~~~~~~~~l~~-----~~~~pia~dEs~~~~~~~~~~~~~~~~dvi~~d~~~~GGit~-- 262 (324)
T TIGR01928 191 RLKELDRYQLLYIEEPFK-IDDLSMLDELAK-----GTITPICLDESITSLDDARNLIELGNVKVINIKPGRLGGLTE-- 262 (324)
T ss_pred HHHHHhhCCCcEEECCCC-hhHHHHHHHHHh-----hcCCCEeeCCCcCCHHHHHHHHHcCCCCEEEeCcchhcCHHH--
Confidence 455555554333321111 234566666666 488999999765 4444445554 48899999999998443
Q ss_pred cccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEee
Q 006566 200 EQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT 238 (640)
Q Consensus 200 ~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGv 238 (640)
+.+++..|.++|+++=+|.
T Consensus 263 --------------------~~~~~~~A~~~gi~~~~~~ 281 (324)
T TIGR01928 263 --------------------VQKAIETCREHGAKVWIGG 281 (324)
T ss_pred --------------------HHHHHHHHHHcCCeEEEcc
Confidence 7889999999999997773
No 227
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=66.82 E-value=99 Score=35.21 Aligned_cols=140 Identities=21% Similarity=0.321 Sum_probs=91.2
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCCC-----cceeeccCCCHHHHHHHhhhcCc
Q 006566 110 TTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYN-----IPLVADIHFAPSVALRVAECFDK 184 (640)
Q Consensus 110 t~t~T~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~-----iPLVADIHF~~~~Al~Aa~~v~K 184 (640)
|+.+..|++.-++..+...++|||- +-|.--.-.|.+||+.+.+. ++ +|+ |.++.++.+ |
T Consensus 69 tS~~~~d~~~E~~K~~~A~~~GADt----iMDLStggdl~~iR~~il~~-s~vpvGTVPi-------Yqa~~~~~~---k 133 (431)
T PRK13352 69 TSSDISDIEEELEKAKVAVKYGADT----IMDLSTGGDLDEIRRAIIEA-SPVPVGTVPI-------YQAAVEAAR---K 133 (431)
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCe----EeeccCCCCHHHHHHHHHHc-CCCCCcChhH-------HHHHHHHHh---c
Confidence 6688899999999999999999994 34444556788888877664 44 444 666655432 1
Q ss_pred eeeCCCCCCchhhhccccccchHHHHHHHhh-hHh----------hHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhC-
Q 006566 185 IRVNPGNFADRRAQFEQLEYTDDEYQKELQH-IEE----------VFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYG- 252 (640)
Q Consensus 185 VRINPGN~~d~~k~F~~~eYtdeeY~~Ele~-I~~----------~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryG- 252 (640)
= |++. +.|.+++-+.+|+ -++ --+..++..|+.++-+-|=--.||+=-..|.+-+
T Consensus 134 ~----~~~~---------~mt~d~~~~~ie~qa~~GVDfmTiHcGi~~~~~~~~~~~~R~~giVSRGGs~~~~WM~~n~~ 200 (431)
T PRK13352 134 Y----GSVV---------DMTEDDLFDVIEKQAKDGVDFMTIHCGVTRETLERLKKSGRIMGIVSRGGSFLAAWMLHNNK 200 (431)
T ss_pred C----CChh---------hCCHHHHHHHHHHHHHhCCCEEEEccchhHHHHHHHHhcCCccCeecCCHHHHHHHHHHcCC
Confidence 1 1222 2344444444432 221 2356788888888888777778888777777766
Q ss_pred CChHHHHHHHHHHHHHHHHCCCCcEEEEEE
Q 006566 253 DSPRGMVESAFEFARICRKLDFHNFLFSMK 282 (640)
Q Consensus 253 dtp~gMVeSAle~~~i~e~~~F~diviSmK 282 (640)
.+| +-|-==+.++||++ ||++||+=
T Consensus 201 ENP--lye~fD~lLeI~~~---yDVtlSLG 225 (431)
T PRK13352 201 ENP--LYEHFDYLLEILKE---YDVTLSLG 225 (431)
T ss_pred cCc--hHHHHHHHHHHHHH---hCeeeecc
Confidence 366 45555566677776 56788863
No 228
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=66.67 E-value=37 Score=35.35 Aligned_cols=49 Identities=22% Similarity=0.427 Sum_probs=36.7
Q ss_pred HHHHHHHHHHcCC-eEEEeeCCCCCcHhHHHHhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEEeCChh
Q 006566 220 FSPLVEKCKKYGR-AVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPV 287 (640)
Q Consensus 220 f~~lV~~~Ke~g~-aIRIGvNhGSLs~ril~ryGdtp~gMVeSAle~~~i~e~~~F~diviSmKsSn~~ 287 (640)
|.++|+.++++|. .+.|=|| |+|.+ +.++-+.+.|++.+.||+.+.++.
T Consensus 73 l~~iv~~l~~~g~~~v~i~TN-G~ll~------------------~~~~~l~~~g~~~v~iSld~~~~~ 122 (302)
T TIGR02668 73 LIEIIRRIKDYGIKDVSMTTN-GILLE------------------KLAKKLKEAGLDRVNVSLDTLDPE 122 (302)
T ss_pred HHHHHHHHHhCCCceEEEEcC-chHHH------------------HHHHHHHHCCCCEEEEEecCCCHH
Confidence 7788999999887 7777776 55522 234456678999999999998754
No 229
>PRK05105 O-succinylbenzoate synthase; Provisional
Probab=66.66 E-value=44 Score=35.76 Aligned_cols=58 Identities=16% Similarity=0.224 Sum_probs=43.9
Q ss_pred CCCcceeeccCC-CHHHHHHHhhhcCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEe
Q 006566 159 NYNIPLVADIHF-APSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIG 237 (640)
Q Consensus 159 g~~iPLVADIHF-~~~~Al~Aa~~v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIG 237 (640)
.+++|+.+|=.+ ++..+......++-|.|-|+..|.-.+ ...+++.|.++|+++=+|
T Consensus 207 ~~~~PIa~DEs~~~~~~~~~~~~~~d~i~ik~~k~GGi~~----------------------a~~i~~~A~~~gi~~~~~ 264 (322)
T PRK05105 207 ATGIAIAWDESLREPDFQFEAEPGVRAIVIKPTLTGSLEK----------------------CQELIEQAHALGLRAVIS 264 (322)
T ss_pred hCCCCEEECCCCCchhhhhhhcCCCCEEEECccccCCHHH----------------------HHHHHHHHHHcCCcEEEE
Confidence 478999999664 344333333448889999999998443 778999999999999887
Q ss_pred e
Q 006566 238 T 238 (640)
Q Consensus 238 v 238 (640)
.
T Consensus 265 ~ 265 (322)
T PRK05105 265 S 265 (322)
T ss_pred C
Confidence 4
No 230
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=66.63 E-value=2.1e+02 Score=31.49 Aligned_cols=209 Identities=15% Similarity=0.181 Sum_probs=121.3
Q ss_pred eeEEEceeecCCCCceEEEeccC--CCCCC---HHHHHHHHHHHHHcCCCEEEEe-----------------cCCHHHHH
Q 006566 89 RTVMVGNVAIGSEHPIRVQTMTT--NDTKD---VAGTVEEVMRIADQGADLVRIT-----------------VQGKREAD 146 (640)
Q Consensus 89 r~V~VG~v~IGG~~PI~VQSMt~--t~T~D---v~atv~Qi~rl~~aGceiVRvt-----------------vp~~~~A~ 146 (640)
..++||++.+ .|-|..-.|++ ....| ++..++=..+.+ |+=+| |+ .-+.+..+
T Consensus 5 ~P~~ig~~~l--kNRiv~apm~~~~~~~~~g~~t~~~~~~y~~rA--g~GLI-i~e~~~v~~~~~~~~~~~~l~~d~~i~ 79 (362)
T PRK10605 5 SPLKVGAITA--PNRVFMAPLTRLRSIEPGDIPTPLMAEYYRQRA--SAGLI-ISEATQISAQAKGYAGAPGLHSPEQIA 79 (362)
T ss_pred CCeeECCEEe--ccccEECCcCcCccCCCCCCCCHHHHHHHHHHh--CCCEE-EECceeeCcccccCCCCCcccCHHHHH
Confidence 3577888887 89999999975 22234 677777666665 55555 22 11346678
Q ss_pred HHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhhcCceeeCCCCCCchhh--------------hccccccchHHHHHH
Q 006566 147 ACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRA--------------QFEQLEYTDDEYQKE 212 (640)
Q Consensus 147 ~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~v~KVRINPGN~~d~~k--------------~F~~~eYtdeeY~~E 212 (640)
.++++.+..++.|.. +++=+|-.-+.+......-.+.-+-|..+..... .....+.| .+|
T Consensus 80 ~~~~lad~vH~~Ga~--i~~QL~H~Gr~~~~~~~~~~~~~~apS~~~~~~~~~~~~~~~~~~~~~~~~p~~mt----~~e 153 (362)
T PRK10605 80 AWKKITAGVHAEGGH--IAVQLWHTGRISHASLQPGGQAPVAPSAINAGTRTSLRDENGQAIRVETSTPRALE----LEE 153 (362)
T ss_pred HHHHHHHHHHhCCCE--EEEeccCCCCCCCcccCCCCCCeECCCCcCcCcccccccccccccccCCCCCccCC----HHH
Confidence 999999999988774 5665544333332110000001133333321100 00112222 456
Q ss_pred HhhhHhhHHHHHHHHHHcCC-eEEEeeCCCCCcHhHHHH--------hCCChHHHHHHHHHHHHHHHH-CCCCcEEEEEE
Q 006566 213 LQHIEEVFSPLVEKCKKYGR-AVRIGTNHGSLSDRIMSY--------YGDSPRGMVESAFEFARICRK-LDFHNFLFSMK 282 (640)
Q Consensus 213 le~I~~~f~~lV~~~Ke~g~-aIRIGvNhGSLs~ril~r--------yGdtp~gMVeSAle~~~i~e~-~~F~diviSmK 282 (640)
++.|.+.|..=.+.|++-|. -|=|=.-||.|=..+||- ||.+.+.=..=.+|-++-.++ .| .++ |.+|
T Consensus 154 I~~ii~~f~~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg-~~~-igvR 231 (362)
T PRK10605 154 IPGIVNDFRQAIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWG-ADR-IGIR 231 (362)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcC-CCe-EEEE
Confidence 77777778777778887775 356677899998888874 787766555555555554333 23 333 6666
Q ss_pred eCCh--------hhHHHH-HHHHHHHHHHcCCCcceEE
Q 006566 283 ASNP--------VVMVQA-YRLLVAEMYVHGWDYPLHL 311 (640)
Q Consensus 283 sSn~--------~~mV~A-yRlL~~~m~~~g~dyPLHL 311 (640)
-|-. -...+. ...+++.|++.|+|| +|+
T Consensus 232 is~~~~~~~~~~G~~~~e~~~~~~~~L~~~giD~-i~v 268 (362)
T PRK10605 232 ISPLGTFNNVDNGPNEEADALYLIEQLGKRGIAY-LHM 268 (362)
T ss_pred ECCccccccCCCCCCHHHHHHHHHHHHHHcCCCE-EEe
Confidence 5521 023344 567778887788766 343
No 231
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=66.22 E-value=71 Score=32.95 Aligned_cols=113 Identities=23% Similarity=0.329 Sum_probs=67.5
Q ss_pred CceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHH-HHHHHHHHHHhhcCCCCcceeeccCCCHHHHHH---
Q 006566 102 HPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKRE-ADACFEIKNSLVQKNYNIPLVADIHFAPSVALR--- 177 (640)
Q Consensus 102 ~PI~VQSMt~t~T~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~-A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~--- 177 (640)
-|+-|-=|.+. .+ ..+..++++||++|=+-+-.... .+.|..||+ .|+..=| =+||.--.+
T Consensus 63 ~~~dvHLMv~~----P~---~~i~~~~~~gad~I~~H~Ea~~~~~~~l~~Ir~----~g~k~Gl----alnP~T~~~~i~ 127 (223)
T PRK08745 63 APIDVHLMVEP----VD---RIVPDFADAGATTISFHPEASRHVHRTIQLIKS----HGCQAGL----VLNPATPVDILD 127 (223)
T ss_pred CCEEEEeccCC----HH---HHHHHHHHhCCCEEEEcccCcccHHHHHHHHHH----CCCceeE----EeCCCCCHHHHH
Confidence 46666777753 23 35678899999998877653322 355666666 4665333 345533333
Q ss_pred -HhhhcCcee---eCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHh
Q 006566 178 -VAECFDKIR---VNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDR 246 (640)
Q Consensus 178 -Aa~~v~KVR---INPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~r 246 (640)
-++.+|.|= +|||--|. +|..- .-+|++.+-+..++++..++|.|- |.++..
T Consensus 128 ~~l~~vD~VlvMtV~PGf~GQ---~fi~~-------------~l~KI~~l~~~~~~~~~~~~IeVD-GGI~~e 183 (223)
T PRK08745 128 WVLPELDLVLVMSVNPGFGGQ---AFIPS-------------ALDKLRAIRKKIDALGKPIRLEID-GGVKAD 183 (223)
T ss_pred HHHhhcCEEEEEEECCCCCCc---cccHH-------------HHHHHHHHHHHHHhcCCCeeEEEE-CCCCHH
Confidence 334466665 89997765 24422 223455566666677878999994 445443
No 232
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=66.15 E-value=31 Score=35.27 Aligned_cols=67 Identities=18% Similarity=0.301 Sum_probs=51.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCC--HHHHHHHHHHHHHhhcCCCCcceeeccCC--CHHHHHHHhhhcCc
Q 006566 115 KDVAGTVEEVMRIADQGADLVRITVQG--KREADACFEIKNSLVQKNYNIPLVADIHF--APSVALRVAECFDK 184 (640)
Q Consensus 115 ~Dv~atv~Qi~rl~~aGceiVRvtvp~--~~~A~~l~~I~~~L~~~g~~iPLVADIHF--~~~~Al~Aa~~v~K 184 (640)
.|.+..++++.++.+.|..-+.+-+-. .++.+-++.|++.+ |-+++|..|.|- ++.-|...++.+++
T Consensus 84 ~~~~~~~~~~~~~~~~G~~~~KiKvg~~~~~d~~~v~~vr~~~---g~~~~l~vDan~~~~~~~a~~~~~~l~~ 154 (265)
T cd03315 84 GEPAEVAEEARRALEAGFRTFKLKVGRDPARDVAVVAALREAV---GDDAELRVDANRGWTPKQAIRALRALED 154 (265)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCCHHHHHHHHHHHHHhc---CCCCEEEEeCCCCcCHHHHHHHHHHHHh
Confidence 367889999999999999999987632 46778888888753 557899999874 56666666665554
No 233
>cd00635 PLPDE_III_YBL036c_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins. This family contains mostly uncharacterized proteins, widely distributed among eukaryotes, bacteria and archaea, that bear similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity.
Probab=66.06 E-value=54 Score=32.80 Aligned_cols=40 Identities=13% Similarity=0.072 Sum_probs=26.5
Q ss_pred eEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHH
Q 006566 104 IRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEI 151 (640)
Q Consensus 104 I~VQSMt~t~T~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I 151 (640)
+++=.|.++ ........ +.++||+ .++|-+.+||..+++.
T Consensus 26 ~~l~avvK~--hg~~~va~----~~~~G~~--~f~va~l~Ea~~lr~~ 65 (222)
T cd00635 26 VTLVAVSKT--VPAEAIRE----AIEAGQR--DFGENRVQEALDKAEE 65 (222)
T ss_pred eEEEEEECC--CCHHHHHH----HHHcCCc--ccCCCcHHHHHHHHHH
Confidence 444444443 45444442 3479998 6999999999998864
No 234
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=66.03 E-value=71 Score=34.55 Aligned_cols=108 Identities=9% Similarity=0.073 Sum_probs=67.4
Q ss_pred cCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCCCcceeeccCC-C-HHHH
Q 006566 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHF-A-PSVA 175 (640)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~iPLVADIHF-~-~~~A 175 (640)
+|.+-+|+|=- | ..-|.+.+++=+++|++.|-..+==-++ ..+.+.+.+|++ .+++|+.+|=++ + +.-+
T Consensus 186 ~G~~~~l~vDa--n-~~~~~~~A~~~~~~l~~~~l~~iEeP~~-~~d~~~~~~l~~-----~~~ipIa~~E~~~~~~~~~ 256 (368)
T cd03329 186 VGPDMRLMHDG--A-HWYSRADALRLGRALEELGFFWYEDPLR-EASISSYRWLAE-----KLDIPILGTEHSRGALESR 256 (368)
T ss_pred hCCCCeEEEEC--C-CCcCHHHHHHHHHHhhhcCCCeEeCCCC-chhHHHHHHHHh-----cCCCCEEccCcccCcHHHH
Confidence 45555555511 1 1134555555555666555443321121 123455666666 488999999875 4 6555
Q ss_pred HHHhh--hcCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEE
Q 006566 176 LRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRI 236 (640)
Q Consensus 176 l~Aa~--~v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRI 236 (640)
...++ .++-|.+-|+..|.-.. ...+...|.++|+++=+
T Consensus 257 ~~~i~~~a~d~v~~d~~~~GGit~----------------------~~~ia~~a~~~gi~~~~ 297 (368)
T cd03329 257 ADWVLAGATDFLRADVNLVGGITG----------------------AMKTAHLAEAFGLDVEL 297 (368)
T ss_pred HHHHHhCCCCEEecCccccCCHHH----------------------HHHHHHHHHHcCCEEEE
Confidence 55544 49999999999987442 67899999999999855
No 235
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=66.01 E-value=20 Score=37.63 Aligned_cols=80 Identities=23% Similarity=0.356 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhh-cCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHH
Q 006566 144 EADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSP 222 (640)
Q Consensus 144 ~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~-v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~ 222 (640)
..+.|+.+.++|++.|+.+-|--|= ++.-...|.+. ++.|=+.-|.|++. | ++++-.+||++|++
T Consensus 108 ~~~~l~~~i~~l~~~gI~VSLFiDP--~~~qi~~A~~~GAd~VELhTG~YA~a---~-----~~~~~~~el~~i~~---- 173 (237)
T TIGR00559 108 LKDKLCELVKRFHAAGIEVSLFIDA--DKDQISAAAEVGADRIEIHTGPYANA---Y-----NKKEMAEELQRIVK---- 173 (237)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEeCC--CHHHHHHHHHhCcCEEEEechhhhcC---C-----CchhHHHHHHHHHH----
Confidence 5677888899999999999998553 45556677777 99999999999983 2 22333456665544
Q ss_pred HHHHHHHcCCeEEEeeCCC
Q 006566 223 LVEKCKKYGRAVRIGTNHG 241 (640)
Q Consensus 223 lV~~~Ke~g~aIRIGvNhG 241 (640)
-.+.|++.| ++||.|
T Consensus 174 aa~~A~~lG----L~VnAG 188 (237)
T TIGR00559 174 ASVHAHSLG----LKVNAG 188 (237)
T ss_pred HHHHHHHcC----CEEecC
Confidence 567777776 477776
No 236
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=65.88 E-value=57 Score=35.35 Aligned_cols=104 Identities=18% Similarity=0.275 Sum_probs=67.0
Q ss_pred cCCCCceEEEeccCCCCCCHHHHHHHHHHH-HHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCCCcceeeccCC-CHHHH
Q 006566 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRI-ADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHF-APSVA 175 (640)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~rl-~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~iPLVADIHF-~~~~A 175 (640)
+|.+--|+|= .| ..-|++.+++-+++| .+.+-+++===+++ .+.+.+++++ +.+|+.+|=.+ ++.-.
T Consensus 131 lGpd~~LrvD--AN-~~ws~~~Ai~~~~~L~e~~~l~~iEqP~~~---~~~la~Lr~~-----~~vPIA~DEs~~~~~d~ 199 (327)
T PRK02901 131 LGPDGRVRVD--AN-GGWSVDEAVAAARALDADGPLEYVEQPCAT---VEELAELRRR-----VGVPIAADESIRRAEDP 199 (327)
T ss_pred cCCCCEEEEE--CC-CCCCHHHHHHHHHHhhhccCceEEecCCCC---HHHHHHHHHh-----CCCCEEeCCCCCCHHHH
Confidence 4555555554 22 224666666666666 45565555433443 5666677764 88999999553 34422
Q ss_pred HHHh--hhcCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEe
Q 006566 176 LRVA--ECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIG 237 (640)
Q Consensus 176 l~Aa--~~v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIG 237 (640)
...+ ..++-+.+.|...|. +.++++.|+++|+++=++
T Consensus 200 ~~l~~~~a~dvi~ik~~~~GG-------------------------it~~lkiA~~~gi~v~v~ 238 (327)
T PRK02901 200 LRVARAGAADVAVLKVAPLGG-------------------------VRAALDIAEQIGLPVVVS 238 (327)
T ss_pred HHHHHcCCCCEEEeCcchhCC-------------------------HHHHHHHHHHcCCcEEEe
Confidence 3333 459999999999998 455677899999888665
No 237
>PRK07534 methionine synthase I; Validated
Probab=65.73 E-value=32 Score=37.42 Aligned_cols=82 Identities=21% Similarity=0.304 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHcCCCEEEE-ecCCHHHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhhcCceeeCCCCCCchh
Q 006566 118 AGTVEEVMRIADQGADLVRI-TVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRR 196 (640)
Q Consensus 118 ~atv~Qi~rl~~aGceiVRv-tvp~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~v~KVRINPGN~~d~~ 196 (640)
+.--+|+..|.++|+|++=+ |.|+.+|++++-+.-+. .++|++.=.-|+ +-|...++.
T Consensus 131 ~~~~~qi~~l~~~gvD~l~~ET~p~l~E~~a~~~~~~~-----~~~Pv~vSft~~----------------~~g~l~~G~ 189 (336)
T PRK07534 131 EAFHEQAEGLKAGGADVLWVETISAPEEIRAAAEAAKL-----AGMPWCGTMSFD----------------TAGRTMMGL 189 (336)
T ss_pred HHHHHHHHHHHhCCCCEEEEeccCCHHHHHHHHHHHHH-----cCCeEEEEEEEC----------------CCCeeCCCC
Confidence 34447899999999999999 79999999988777664 478888544332 124454543
Q ss_pred hhccccccchHHHHHHHhhhHhhHHHHHHHHHHcC-CeEEEeeCCCC
Q 006566 197 AQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYG-RAVRIGTNHGS 242 (640)
Q Consensus 197 k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g-~aIRIGvNhGS 242 (640)
. +..+++..++.+ .+.=||+|.++
T Consensus 190 ~----------------------~~~~~~~~~~~~~~~~avGvNC~~ 214 (336)
T PRK07534 190 T----------------------PADLADLVEKLGEPPLAFGANCGV 214 (336)
T ss_pred c----------------------HHHHHHHHHhcCCCceEEEecCCC
Confidence 2 555666665554 34668999986
No 238
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=65.60 E-value=1.5e+02 Score=32.94 Aligned_cols=145 Identities=13% Similarity=0.171 Sum_probs=72.5
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCCHH-------HHHHHHHHHHHhhcCCCCccee--ecc---CCCHHHHHHHhhh
Q 006566 114 TKDVAGTVEEVMRIADQGADLVRITVQGKR-------EADACFEIKNSLVQKNYNIPLV--ADI---HFAPSVALRVAEC 181 (640)
Q Consensus 114 T~Dv~atv~Qi~rl~~aGceiVRvtvp~~~-------~A~~l~~I~~~L~~~g~~iPLV--ADI---HF~~~~Al~Aa~~ 181 (640)
.++++..+++|+++.+.|..-|.++.++.- ..+.+.++-+.|.+.+. ++-+ ..+ ++++.++....+.
T Consensus 163 ~r~~e~Vv~Ei~~l~~~g~k~i~~~~~d~~~~g~d~~~~~~l~~Ll~~i~~~~~-i~~~r~~~~~p~~~~~ell~~~~~~ 241 (430)
T TIGR01125 163 SRPIEEILKEAERLVDQGVKEIILIAQDTTAYGKDLYRESKLVDLLEELGKVGG-IYWIRMHYLYPDELTDDVIDLMAEG 241 (430)
T ss_pred ecCHHHHHHHHHHHHHCCCcEEEEEeECCCccccCCCCcccHHHHHHHHHhcCC-ccEEEEccCCcccCCHHHHHHHhhC
Confidence 467899999999999999988887754321 11234445554444331 3332 222 3677776554443
Q ss_pred ---cCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCCChHHH
Q 006566 182 ---FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGM 258 (640)
Q Consensus 182 ---v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGdtp~gM 258 (640)
+.-+-|..-...+.--+.-.+-||-+ .+...++.+++++..+-|+++ + |.---|+|.+.
T Consensus 242 ~~~~~~l~iglES~s~~vLk~m~k~~~~~-----------~~~~~i~~l~~~~~~i~i~~~---~---I~G~PgET~e~- 303 (430)
T TIGR01125 242 PKVLPYLDIPLQHASDRILKLMRRPGSGE-----------QQLDFIERLREKCPDAVLRTT---F---IVGFPGETEED- 303 (430)
T ss_pred CcccCceEeCCCCCCHHHHhhCCCCCCHH-----------HHHHHHHHHHHhCCCCeEeEE---E---EEECCCCCHHH-
Confidence 33344433333221111111223322 345556666666433322221 1 11112456633
Q ss_pred HHHHHHHHHHHHHCCCCcEEEE
Q 006566 259 VESAFEFARICRKLDFHNFLFS 280 (640)
Q Consensus 259 VeSAle~~~i~e~~~F~diviS 280 (640)
..+-++++++.+|+.+-++
T Consensus 304 ---~~~t~~fl~~~~~~~~~~~ 322 (430)
T TIGR01125 304 ---FQELLDFVEEGQFDRLGAF 322 (430)
T ss_pred ---HHHHHHHHHhcCCCEEeee
Confidence 3445666677777655544
No 239
>PRK14057 epimerase; Provisional
Probab=65.46 E-value=72 Score=33.82 Aligned_cols=118 Identities=18% Similarity=0.217 Sum_probs=72.2
Q ss_pred CCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHH-HHHHHHHHHHHhhcCCCC-----cceeeccCCCHHH
Q 006566 101 EHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKR-EADACFEIKNSLVQKNYN-----IPLVADIHFAPSV 174 (640)
Q Consensus 101 ~~PI~VQSMt~t~T~Dv~atv~Qi~rl~~aGceiVRvtvp~~~-~A~~l~~I~~~L~~~g~~-----iPLVADIHF~~~~ 174 (640)
..|+-|.=|.+. --..+..++++||++|=+-+-... -.+.|..||+ .|.. -++-|=+=+||.-
T Consensus 75 ~~p~DvHLMV~~-------P~~~i~~~~~aGad~It~H~Ea~~~~~~~l~~Ir~----~G~k~~~~~~~~kaGlAlnP~T 143 (254)
T PRK14057 75 TFIKDVHLMVAD-------QWTAAQACVKAGAHCITLQAEGDIHLHHTLSWLGQ----QTVPVIGGEMPVIRGISLCPAT 143 (254)
T ss_pred CCCeeEEeeeCC-------HHHHHHHHHHhCCCEEEEeeccccCHHHHHHHHHH----cCCCcccccccceeEEEECCCC
Confidence 357778888763 334678899999998877765322 2355666666 3542 2344455566654
Q ss_pred HHHHhh----hcCcee---eCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHh
Q 006566 175 ALRVAE----CFDKIR---VNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDR 246 (640)
Q Consensus 175 Al~Aa~----~v~KVR---INPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~r 246 (640)
-.+.++ .+|.|= +|||--|.+ |.. ..-+|++++-+.-+++|..++|.|- |+++..
T Consensus 144 p~e~i~~~l~~vD~VLvMtV~PGfgGQ~---Fi~-------------~~l~KI~~lr~~~~~~~~~~~IeVD-GGI~~~ 205 (254)
T PRK14057 144 PLDVIIPILSDVEVIQLLAVNPGYGSKM---RSS-------------DLHERVAQLLCLLGDKREGKIIVID-GSLTQD 205 (254)
T ss_pred CHHHHHHHHHhCCEEEEEEECCCCCchh---ccH-------------HHHHHHHHHHHHHHhcCCCceEEEE-CCCCHH
Confidence 444444 477665 899987652 432 2233444555666678888999994 445544
No 240
>PRK12376 putative translaldolase; Provisional
Probab=64.90 E-value=27 Score=36.50 Aligned_cols=75 Identities=17% Similarity=0.260 Sum_probs=54.4
Q ss_pred CCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHH-HH-HHHHHHHHHhhcCCCCcceeeccCCCHHHHH
Q 006566 99 GSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKR-EA-DACFEIKNSLVQKNYNIPLVADIHFAPSVAL 176 (640)
Q Consensus 99 GG~~PI~VQSMt~t~T~Dv~atv~Qi~rl~~aGceiVRvtvp~~~-~A-~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al 176 (640)
.++.||.+|-+ ..|.++.++|.++|.+.+-.++ |-+|--. +- +.++.|++ |.++|+++-+=+ =|++.=|+
T Consensus 56 ~~~~~vs~EV~----~~d~~~mv~eA~~l~~~~~nv~-VKIP~T~~~G~~gl~Ai~~-L~~~GI~vn~T~--vfs~~Qa~ 127 (236)
T PRK12376 56 IPDAPISFEVF----ADDLETMEKEAEKIASLGENVY-VKIPITNTKGESTIPLIKK-LSADGVKLNVTA--IFTIEQVK 127 (236)
T ss_pred cCCCcEEEEEe----cCCHHHHHHHHHHHHHhCCCeE-EEECCcCccchhHHHHHHH-HHHCCCeEEEee--ecCHHHHH
Confidence 34669999984 6789999999999999987754 7888764 21 45555553 556676654433 68998888
Q ss_pred HHhhh
Q 006566 177 RVAEC 181 (640)
Q Consensus 177 ~Aa~~ 181 (640)
.|+++
T Consensus 128 ~a~~A 132 (236)
T PRK12376 128 EVVDA 132 (236)
T ss_pred HHHHH
Confidence 77666
No 241
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=64.88 E-value=2.1e+02 Score=33.80 Aligned_cols=156 Identities=17% Similarity=0.166 Sum_probs=98.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEe----c------CCHHHHHHHHHHHHHhhcCCCCcce---------eeccCCCHH--
Q 006566 115 KDVAGTVEEVMRIADQGADLVRIT----V------QGKREADACFEIKNSLVQKNYNIPL---------VADIHFAPS-- 173 (640)
Q Consensus 115 ~Dv~atv~Qi~rl~~aGceiVRvt----v------p~~~~A~~l~~I~~~L~~~g~~iPL---------VADIHF~~~-- 173 (640)
..++..+.=...|.++|.+.+=+. . -+..+-+.|+.|++. .-++|| |+=-|+.-+
T Consensus 24 ~~~~d~l~ia~~ld~~G~~siE~~GGatf~~~~~~~~e~p~e~lr~l~~~----~~~~~lqml~Rg~n~vg~~~ypddvv 99 (593)
T PRK14040 24 LRLDDMLPIAAKLDKVGYWSLESWGGATFDACIRFLGEDPWERLRELKKA----MPNTPQQMLLRGQNLLGYRHYADDVV 99 (593)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEecCCcchhhhccccCCCHHHHHHHHHHh----CCCCeEEEEecCcceeccccCcHHHH
Confidence 344555666677888899998773 2 366788889999886 344775 554454323
Q ss_pred --HHHHHhhh-cCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCC-CCCcHhHHH
Q 006566 174 --VALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNH-GSLSDRIMS 249 (640)
Q Consensus 174 --~Al~Aa~~-v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNh-GSLs~ril~ 249 (640)
....|+++ ++-|||= |.-. | + +.+.+.++.||++|.-.+..++. +| .
T Consensus 100 ~~~v~~a~~~Gid~~rif-----d~ln--------d---------~-~~~~~ai~~ak~~G~~~~~~i~yt~~--p---- 150 (593)
T PRK14040 100 ERFVERAVKNGMDVFRVF-----DAMN--------D---------P-RNLETALKAVRKVGAHAQGTLSYTTS--P---- 150 (593)
T ss_pred HHHHHHHHhcCCCEEEEe-----eeCC--------c---------H-HHHHHHHHHHHHcCCeEEEEEEEeeC--C----
Confidence 24467777 8889985 1110 0 0 25788899999999866554432 11 1
Q ss_pred HhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEEeCChhhHHHHHHHHHHHHHHcCCCcceEEE
Q 006566 250 YYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLG 312 (640)
Q Consensus 250 ryGdtp~gMVeSAle~~~i~e~~~F~diviSmKsSn~~~mV~AyRlL~~~m~~~g~dyPLHLG 312 (640)
+ +|+ +--.+.++-+++.|-+ .|++|-++=..+=+....|++.+.++ ++.|+|+-
T Consensus 151 ~--~~~----~~~~~~a~~l~~~Gad--~i~i~Dt~G~l~P~~~~~lv~~lk~~-~~~pi~~H 204 (593)
T PRK14040 151 V--HTL----QTWVDLAKQLEDMGVD--SLCIKDMAGLLKPYAAYELVSRIKKR-VDVPLHLH 204 (593)
T ss_pred c--cCH----HHHHHHHHHHHHcCCC--EEEECCCCCCcCHHHHHHHHHHHHHh-cCCeEEEE
Confidence 1 243 3344566667778876 77888887666666666666665443 46787763
No 242
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=64.44 E-value=44 Score=35.99 Aligned_cols=143 Identities=12% Similarity=0.124 Sum_probs=89.8
Q ss_pred HHHHHHHHHHH-HHcC---CCEEEEe--cCCHHHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhhcCceeeCCC
Q 006566 117 VAGTVEEVMRI-ADQG---ADLVRIT--VQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPG 190 (640)
Q Consensus 117 v~atv~Qi~rl-~~aG---ceiVRvt--vp~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~v~KVRINPG 190 (640)
+++-+.+|... ...| .+-|-+. +|+.-..+.|..|-+.|++ ..++. -| +++ -+=.||+
T Consensus 33 ~~~l~~Ei~~~~~~~~~~~v~~i~~GGGtPs~l~~~~l~~ll~~i~~-~~~~~--~~-----------~ei--tie~np~ 96 (360)
T TIGR00539 33 TQALCQDLKHALSQTDQEPLESIFIGGGTPNTLSVEAFERLFESIYQ-HASLS--DD-----------CEI--TTEANPE 96 (360)
T ss_pred HHHHHHHHHHHHHhcCCCcccEEEeCCCchhcCCHHHHHHHHHHHHH-hCCCC--CC-----------CEE--EEEeCCC
Confidence 44555555543 2334 4566665 7887666666666665432 11110 01 122 1235999
Q ss_pred CCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCC-ChHHHHHHHHHHHHHH
Q 006566 191 NFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFARIC 269 (640)
Q Consensus 191 N~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGd-tp~gMVeSAle~~~i~ 269 (640)
.+-. +.++..|+.|+ -||-+.-=|++++++...|- .. .+.+.+-++.+
T Consensus 97 ~lt~---------------------------e~l~~l~~~Gv-~risiGvqS~~~~~l~~lgR~~~---~~~~~~ai~~l 145 (360)
T TIGR00539 97 LITA---------------------------EWCKGLKGAGI-NRLSLGVQSFRDDKLLFLGRQHS---AKNIAPAIETA 145 (360)
T ss_pred CCCH---------------------------HHHHHHHHcCC-CEEEEecccCChHHHHHhCCCCC---HHHHHHHHHHH
Confidence 9843 24677888885 48888778899999999983 22 56677788889
Q ss_pred HHCCCCcEEEEEEeCChhhHHHHHHHHHHHHHHcCCC
Q 006566 270 RKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWD 306 (640)
Q Consensus 270 e~~~F~diviSmKsSn~~~mV~AyRlL~~~m~~~g~d 306 (640)
++.||.++.+.+=--=|..+.+..+...+.+.+.+.+
T Consensus 146 ~~~G~~~v~~dli~GlPgqt~~~~~~~l~~~~~l~~~ 182 (360)
T TIGR00539 146 LKSGIENISLDLMYGLPLQTLNSLKEELKLAKELPIN 182 (360)
T ss_pred HHcCCCeEEEeccCCCCCCCHHHHHHHHHHHHccCCC
Confidence 9999988777665544556677777666666555543
No 243
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=64.16 E-value=2e+02 Score=31.54 Aligned_cols=142 Identities=16% Similarity=0.237 Sum_probs=84.6
Q ss_pred CHHHHHHHHHHHHHc----CCCEEEEe--cCCHHHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhhcCceeeCC
Q 006566 116 DVAGTVEEVMRIADQ----GADLVRIT--VQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNP 189 (640)
Q Consensus 116 Dv~atv~Qi~rl~~a----GceiVRvt--vp~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~v~KVRINP 189 (640)
-+++-.++|....+. ..+-|-+- +|+.=..+.|..|-+.+++ ..|+..|.+|. +=.||
T Consensus 36 Y~~aL~~Ei~~~~~~~~~~~i~tiy~GGGTPs~l~~~~L~~ll~~i~~---~f~~~~~~eit-------------~E~~P 99 (380)
T PRK09057 36 FAAAFLRELATEAARTGPRTLTSIFFGGGTPSLMQPETVAALLDAIAR---LWPVADDIEIT-------------LEANP 99 (380)
T ss_pred HHHHHHHHHHHHHHHcCCCCcCeEEeCCCccccCCHHHHHHHHHHHHH---hCCCCCCccEE-------------EEECc
Confidence 567778888765543 23445553 7887777888887776654 13333332211 23599
Q ss_pred CCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCC--ChHHHHHHHHHHHH
Q 006566 190 GNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGD--SPRGMVESAFEFAR 267 (640)
Q Consensus 190 GN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGd--tp~gMVeSAle~~~ 267 (640)
+++-. + .++..|+.|+- ||-+.-=|.+++++.+.|- ++ +.+.+.++
T Consensus 100 ~~i~~-e--------------------------~L~~l~~~Gvn-rislGvQS~~d~vL~~l~R~~~~----~~~~~ai~ 147 (380)
T PRK09057 100 TSVEA-G--------------------------RFRGYRAAGVN-RVSLGVQALNDADLRFLGRLHSV----AEALAAID 147 (380)
T ss_pred CcCCH-H--------------------------HHHHHHHcCCC-EEEEecccCCHHHHHHcCCCCCH----HHHHHHHH
Confidence 98843 2 35667778864 5555557888999999883 43 44455566
Q ss_pred HHHHCCCCcEEEEEEeCChhhHHHHHHHHHHHHHHcCCC
Q 006566 268 ICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWD 306 (640)
Q Consensus 268 i~e~~~F~diviSmKsSn~~~mV~AyRlL~~~m~~~g~d 306 (640)
.+++. |.++.+.+=--=|-.+.+..+.-.+++.+.+.+
T Consensus 148 ~~~~~-~~~v~~dli~GlPgqt~~~~~~~l~~~~~l~p~ 185 (380)
T PRK09057 148 LAREI-FPRVSFDLIYARPGQTLAAWRAELKEALSLAAD 185 (380)
T ss_pred HHHHh-CccEEEEeecCCCCCCHHHHHHHHHHHHhcCCC
Confidence 66676 777776654333444555555544444444433
No 244
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=64.13 E-value=1.7e+02 Score=31.32 Aligned_cols=71 Identities=10% Similarity=0.086 Sum_probs=38.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEe--cCCHHHHHHHHHHHHHhhcCCCCcceeecc-CCCHHHHHHHhhh-cCceee
Q 006566 115 KDVAGTVEEVMRIADQGADLVRIT--VQGKREADACFEIKNSLVQKNYNIPLVADI-HFAPSVALRVAEC-FDKIRV 187 (640)
Q Consensus 115 ~Dv~atv~Qi~rl~~aGceiVRvt--vp~~~~A~~l~~I~~~L~~~g~~iPLVADI-HF~~~~Al~Aa~~-v~KVRI 187 (640)
++++...+-+.++.+.|...|-++ =|-+. ..+.+|-+.++++|+.+=|+.-- .++++.+..-.+. ++.|.|
T Consensus 37 l~~e~~~~ii~~~~~~g~~~v~~~GGEPll~--~~~~~ii~~~~~~g~~~~l~TNG~ll~~e~~~~L~~~g~~~v~i 111 (358)
T TIGR02109 37 LTTEEWTDVLTQAAELGVLQLHFSGGEPLAR--PDLVELVAHARRLGLYTNLITSGVGLTEARLDALADAGLDHVQL 111 (358)
T ss_pred CCHHHHHHHHHHHHhcCCcEEEEeCcccccc--ccHHHHHHHHHHcCCeEEEEeCCccCCHHHHHHHHhCCCCEEEE
Confidence 445555555556677898888887 23322 23555666666666654444443 3455555444444 444444
No 245
>COG0854 PdxJ Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=64.06 E-value=38 Score=35.60 Aligned_cols=114 Identities=20% Similarity=0.251 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhh-cCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHH
Q 006566 144 EADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSP 222 (640)
Q Consensus 144 ~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~-v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~ 222 (640)
..+-|+.+.++|.+.|+.+-|-.| =+|.--..|++. ++-|=+--|-|++-. |++-+++.++.-+++..
T Consensus 109 ~~~~l~~~v~~L~~~GirVSLFiD--~d~~qi~aa~~~gA~~IELhTG~Ya~~~---------~~~~~~~~~~el~rl~~ 177 (243)
T COG0854 109 QLDKLRDAVRRLKNAGIRVSLFID--PDPEQIEAAAEVGAPRIELHTGPYADAH---------DAAEQARADAELERLAK 177 (243)
T ss_pred hhhhHHHHHHHHHhCCCeEEEEeC--CCHHHHHHHHHhCCCEEEEecccccccC---------ChHHHHHHHHHHHHHHH
Confidence 467788888889999999999999 455555566666 999999999999843 22333333333334444
Q ss_pred HHHHHHHcCCeEEEeeCCCC-CcHh----HHHHh-------CC--C----hHHHHHHHHHHHHHHHHC
Q 006566 223 LVEKCKKYGRAVRIGTNHGS-LSDR----IMSYY-------GD--S----PRGMVESAFEFARICRKL 272 (640)
Q Consensus 223 lV~~~Ke~g~aIRIGvNhGS-Ls~r----il~ry-------Gd--t----p~gMVeSAle~~~i~e~~ 272 (640)
-.+.|.+.|.. ||.|- |+-. ++..- |. + -.||.+...|+.++|...
T Consensus 178 ~a~~A~~lGL~----VnAGHgLty~Nv~~~a~~~~i~ElnIGH~iia~Av~~Gl~~aV~~m~~~~~~~ 241 (243)
T COG0854 178 AAKLAAELGLK----VNAGHGLTYHNVKPLAAIPPLAELNIGHSIIARAVFVGLEEAVREMKRLMKRA 241 (243)
T ss_pred HHHHHHHcCce----EecCCCccccchHHHhcCCcceeecccHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 66788887764 45552 2110 11100 00 0 156777788888887654
No 246
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=63.77 E-value=44 Score=34.15 Aligned_cols=153 Identities=19% Similarity=0.265 Sum_probs=86.5
Q ss_pred HHHHHHHHHHcCCCEEEEecC------CHHHHHHHHHHHHHhhcCCCCcceeeccCCC-HHHHHHHhhh-cCceeeCCCC
Q 006566 120 TVEEVMRIADQGADLVRITVQ------GKREADACFEIKNSLVQKNYNIPLVADIHFA-PSVALRVAEC-FDKIRVNPGN 191 (640)
Q Consensus 120 tv~Qi~rl~~aGceiVRvtvp------~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~-~~~Al~Aa~~-v~KVRINPGN 191 (640)
-++-++++.++||+-+=++=- .....+.+++|++ .+++|++++-.+. ..-+..+++. +++|=|+=+.
T Consensus 32 ~~~~a~~~~~~G~~~i~i~dl~~~~~~~~~~~~~i~~i~~-----~~~ipv~~~GGi~s~~~~~~~l~~Ga~~Viigt~~ 106 (253)
T PRK02083 32 PVELAKRYNEEGADELVFLDITASSEGRDTMLDVVERVAE-----QVFIPLTVGGGIRSVEDARRLLRAGADKVSINSAA 106 (253)
T ss_pred HHHHHHHHHHcCCCEEEEEeCCcccccCcchHHHHHHHHH-----hCCCCEEeeCCCCCHHHHHHHHHcCCCEEEEChhH
Confidence 345666777999987766522 2233445555555 3789999987776 7777777777 8999888776
Q ss_pred CCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcC-CeEEEee--CC----CCCcHhHHHHhCCChHHHHHHHHH
Q 006566 192 FADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYG-RAVRIGT--NH----GSLSDRIMSYYGDSPRGMVESAFE 264 (640)
Q Consensus 192 ~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g-~aIRIGv--Nh----GSLs~ril~ryGdtp~gMVeSAle 264 (640)
+.+++. |.+ .++++| -.|...+ .. |.. .+.-+=+..+... +.++
T Consensus 107 l~~p~~----------------------~~e---i~~~~g~~~iv~slD~~~~~~~~~~--~v~~~~~~~~~~~--~~~~ 157 (253)
T PRK02083 107 VANPEL----------------------ISE---AADRFGSQCIVVAIDAKRDPEPGRW--EVYTHGGRKPTGL--DAVE 157 (253)
T ss_pred hhCcHH----------------------HHH---HHHHcCCCCEEEEEEeccCCCCCCE--EEEEcCCceecCC--CHHH
Confidence 665432 322 333333 1233222 22 311 1111212122122 6688
Q ss_pred HHHHHHHCCCCcEEEEEEeCCh---hhHHHHHHHHHHHHHHcCCCcceEE
Q 006566 265 FARICRKLDFHNFLFSMKASNP---VVMVQAYRLLVAEMYVHGWDYPLHL 311 (640)
Q Consensus 265 ~~~i~e~~~F~diviSmKsSn~---~~mV~AyRlL~~~m~~~g~dyPLHL 311 (640)
+++.+++.|+..+++.=-+.+. -.-.+.++.+.+. .+.|+-.
T Consensus 158 ~~~~~~~~g~~~ii~~~i~~~g~~~g~d~~~i~~~~~~-----~~ipvia 202 (253)
T PRK02083 158 WAKEVEELGAGEILLTSMDRDGTKNGYDLELTRAVSDA-----VNVPVIA 202 (253)
T ss_pred HHHHHHHcCCCEEEEcCCcCCCCCCCcCHHHHHHHHhh-----CCCCEEE
Confidence 9999999999998774222211 0114555666655 5678643
No 247
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=63.61 E-value=2.7e+02 Score=32.88 Aligned_cols=163 Identities=18% Similarity=0.192 Sum_probs=0.0
Q ss_pred EeccCCCCCCHHHHHHHHHHHHHcCCCEEEEe----------cCCHHHHHHHHHHHHHhhcCCCCcceeeccC-------
Q 006566 107 QTMTTNDTKDVAGTVEEVMRIADQGADLVRIT----------VQGKREADACFEIKNSLVQKNYNIPLVADIH------- 169 (640)
Q Consensus 107 QSMt~t~T~Dv~atv~Qi~rl~~aGceiVRvt----------vp~~~~A~~l~~I~~~L~~~g~~iPLVADIH------- 169 (640)
||=..| ...++.-+.-+..|.++|...+=+. .-+.+.-+.|+.+++. .-++++.+=.+
T Consensus 16 Qs~~at-r~~t~d~l~ia~~l~~~G~~~iE~~ggatfd~~~rfl~edp~e~l~~l~~~----~~~~~l~~l~Rg~N~~gy 90 (592)
T PRK09282 16 QSLLAT-RMRTEDMLPIAEKLDKVGFWSLEVWGGATFDVCIRYLNEDPWERLRKLKKA----LPNTPLQMLLRGQNLVGY 90 (592)
T ss_pred cccCCc-cCCHHHHHHHHHHHHHcCCCEEEecCCccchhhcccCCccHHHHHHHHHHh----CCCCEEEEEecccccccc
Q ss_pred ------CCHHHHHHHhhh-cCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCC
Q 006566 170 ------FAPSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGS 242 (640)
Q Consensus 170 ------F~~~~Al~Aa~~-v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGS 242 (640)
.-......|+++ ++.||| |...... +.+.+.++.+|++|.-+...+
T Consensus 91 ~~ypd~vv~~~v~~A~~~Gvd~iri-----------f~~lnd~------------~n~~~~i~~ak~~G~~v~~~i---- 143 (592)
T PRK09282 91 RHYPDDVVEKFVEKAAENGIDIFRI-----------FDALNDV------------RNMEVAIKAAKKAGAHVQGTI---- 143 (592)
T ss_pred ccccchhhHHHHHHHHHCCCCEEEE-----------EEecChH------------HHHHHHHHHHHHcCCEEEEEE----
Q ss_pred CcHhHHHHhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEEeCChhhHHHHHHHHHHHHHHcCCCcceEE
Q 006566 243 LSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHL 311 (640)
Q Consensus 243 Ls~ril~ryGdtp~gMVeSAle~~~i~e~~~F~diviSmKsSn~~~mV~AyRlL~~~m~~~g~dyPLHL 311 (640)
-|-..|.-=.+--++.++-+++.|-+ .|++|-++=..+=+..+.|++.+.++- +-|+|+
T Consensus 144 -------~~t~~p~~t~~~~~~~a~~l~~~Gad--~I~i~Dt~G~~~P~~~~~lv~~lk~~~-~~pi~~ 202 (592)
T PRK09282 144 -------SYTTSPVHTIEKYVELAKELEEMGCD--SICIKDMAGLLTPYAAYELVKALKEEV-DLPVQL 202 (592)
T ss_pred -------EeccCCCCCHHHHHHHHHHHHHcCCC--EEEECCcCCCcCHHHHHHHHHHHHHhC-CCeEEE
No 248
>cd06810 PLPDE_III_ODC_DapDC_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Ornithine and Diaminopimelate Decarboxylases, and Related Enzymes. This family includes eukaryotic ornithine decarboxylase (ODC, EC 4.1.1.17), diaminopimelate decarboxylase (DapDC, EC 4.1.1.20), plant and prokaryotic biosynthetic arginine decarboxylase (ADC, EC 4.1.1.19), carboxynorspermidine decarboxylase (CANSDC), and ODC-like enzymes from diverse bacterial species. These proteins are fold type III PLP-dependent enzymes that catalyze essential steps in the biosynthesis of polyamine and lysine. ODC and ADC participate in alternative pathways of the biosynthesis of putrescine, which is the precursor of aliphatic polyamines in many organisms. ODC catalyzes the direct synthesis of putrescine from L-ornithine, while ADC converts L-arginine to agmatine, which is hydrolysed to putrescine by agmatinase in a pathway that exists only in plants and bacteria. DapDC converts meso-2,6-diaminoheptanedioate to
Probab=63.24 E-value=61 Score=34.45 Aligned_cols=117 Identities=17% Similarity=0.169 Sum_probs=64.5
Q ss_pred HHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhhcCceeeCCCCCC--------
Q 006566 122 EEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFA-------- 193 (640)
Q Consensus 122 ~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~v~KVRINPGN~~-------- 193 (640)
+++.++.+.|+ ..+++.+.++++.|.++.+++ |.+..+ -||||||.-.
T Consensus 82 ~~l~~~~~~~~--~~~~vds~~el~~l~~~~~~~---~~~~~v-------------------~lrin~g~~~~~~~~~~~ 137 (368)
T cd06810 82 SEIEAALASGV--DHIVVDSLDELERLNELAKKL---GPKARI-------------------LLRVNPDVSAGTHKISTG 137 (368)
T ss_pred HHHHHHHHCCC--CEEEeCCHHHHHHHHHHHHHh---CCCCeE-------------------EEEECCCCCCCcccCccC
Confidence 34555555553 566677777776666665431 111111 3899999732
Q ss_pred chhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeE-EEeeCCCCCcHhHHHHhCCChHHHHHHHHHHHHHHHHC
Q 006566 194 DRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAV-RIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKL 272 (640)
Q Consensus 194 d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aI-RIGvNhGSLs~ril~ryGdtp~gMVeSAle~~~i~e~~ 272 (640)
....+|-... +.+.++++.+++.++.+ =|-+..||-....-. | ...++.+.+.++-+++.
T Consensus 138 ~~~srfGi~~--------------~e~~~~~~~~~~~~l~l~Gl~~H~gs~~~d~~~-~----~~~~~~~~~~~~~l~~~ 198 (368)
T cd06810 138 GLKSKFGLSL--------------SEARAALERAKELDLRLVGLHFHVGSQILDLET-I----VQALSDARELIEELVEM 198 (368)
T ss_pred CCCCCcCCCH--------------HHHHHHHHHHHhCCCcEEEEEEcCCcCCCCHHH-H----HHHHHHHHHHHHHHHhc
Confidence 1112232211 13566777888877332 134567775432211 2 35677777777777777
Q ss_pred CCCcEEEEE
Q 006566 273 DFHNFLFSM 281 (640)
Q Consensus 273 ~F~diviSm 281 (640)
|+.=-.|||
T Consensus 199 g~~~~~id~ 207 (368)
T cd06810 199 GFPLEMLDL 207 (368)
T ss_pred CCCCCEEEe
Confidence 776556666
No 249
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=63.15 E-value=52 Score=35.35 Aligned_cols=93 Identities=17% Similarity=0.228 Sum_probs=62.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCH-HHHHHHHHHHHHhhcCCCCcceeeccCC-CHHHHHHHhhh--cCceeeCCCC
Q 006566 116 DVAGTVEEVMRIADQGADLVRITVQGK-READACFEIKNSLVQKNYNIPLVADIHF-APSVALRVAEC--FDKIRVNPGN 191 (640)
Q Consensus 116 Dv~atv~Qi~rl~~aGceiVRvtvp~~-~~A~~l~~I~~~L~~~g~~iPLVADIHF-~~~~Al~Aa~~--v~KVRINPGN 191 (640)
+.+.+++-.++|.+.| +.-|-=|-. .+.+.+++++++ +++|+.+|=++ ++.-....++. ++-+.+.|..
T Consensus 200 ~~~~A~~~~~~l~~~~--~~~iEeP~~~~~~~~~~~l~~~-----~~~pia~dE~~~~~~~~~~~i~~~~~d~~~~d~~~ 272 (365)
T cd03318 200 DESTAIRALPRLEAAG--VELIEQPVPRENLDGLARLRSR-----NRVPIMADESVSGPADAFELARRGAADVFSLKIAK 272 (365)
T ss_pred CHHHHHHHHHHHHhcC--cceeeCCCCcccHHHHHHHHhh-----cCCCEEcCcccCCHHHHHHHHHhCCCCeEEEeecc
Confidence 4455555555565554 333443322 245566666663 88999999875 45444555443 8999999999
Q ss_pred CCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEe
Q 006566 192 FADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIG 237 (640)
Q Consensus 192 ~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIG 237 (640)
.|.-.. +..+...|+++|+++=+|
T Consensus 273 ~GGit~----------------------~~~~~~~a~~~gi~~~~~ 296 (365)
T cd03318 273 SGGLRR----------------------AQKVAAIAEAAGIALYGG 296 (365)
T ss_pred cCCHHH----------------------HHHHHHHHHHcCCceeec
Confidence 987442 788999999999987554
No 250
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=62.99 E-value=48 Score=35.70 Aligned_cols=85 Identities=13% Similarity=0.193 Sum_probs=56.6
Q ss_pred cCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCC-----------HHHHHHHHHHHHHhhcCCCCcceee
Q 006566 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQG-----------KREADACFEIKNSLVQKNYNIPLVA 166 (640)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~rl~~aGceiVRvtvp~-----------~~~A~~l~~I~~~L~~~g~~iPLVA 166 (640)
+||..+=+|.+-.+....+.+...+|+.++.+.|...+.+-+-+ .++.+-++.+++. -|-.+.|..
T Consensus 105 LGg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~KiKvg~~~~~~~~~~~~~~D~~~i~avr~~---~g~~~~l~v 181 (352)
T cd03325 105 LGGQVRDRVRVYSWIGGDRPSDVAEAARARREAGFTAVKMNATEELQWIDTSKKVDAAVERVAALREA---VGPDIDIGV 181 (352)
T ss_pred cCCCccceeEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCcccCCCHHHHHHHHHHHHHHHHh---hCCCCEEEE
Confidence 46643333333332223467788899999999999999998732 2466667777663 345789999
Q ss_pred ccC--CCHHHHHHHhhhcCce
Q 006566 167 DIH--FAPSVALRVAECFDKI 185 (640)
Q Consensus 167 DIH--F~~~~Al~Aa~~v~KV 185 (640)
|-+ |+++-|+..++.+++.
T Consensus 182 DaN~~~~~~~A~~~~~~l~~~ 202 (352)
T cd03325 182 DFHGRVSKPMAKDLAKELEPY 202 (352)
T ss_pred ECCCCCCHHHHHHHHHhcccc
Confidence 986 5666777766666654
No 251
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=62.80 E-value=23 Score=38.10 Aligned_cols=75 Identities=23% Similarity=0.416 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHcCCCEEEEec-C------------CHHHHHHHHHHHHHhhcCCCCcceeeccCCC-HHHHHHHhhh-cC
Q 006566 119 GTVEEVMRIADQGADLVRITV-Q------------GKREADACFEIKNSLVQKNYNIPLVADIHFA-PSVALRVAEC-FD 183 (640)
Q Consensus 119 atv~Qi~rl~~aGceiVRvtv-p------------~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~-~~~Al~Aa~~-v~ 183 (640)
.|.++.++++++|+|.|.+.. | +.-...++.++.+.+. .+++|+|||--.. +.-+.+|+.. ++
T Consensus 144 ~t~~~A~~l~~aGaD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~--~~~vpVIA~GGI~~~~di~kAla~GA~ 221 (325)
T cd00381 144 VTAEAARDLIDAGADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAAR--DYGVPVIADGGIRTSGDIVKALAAGAD 221 (325)
T ss_pred CCHHHHHHHHhcCCCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHh--hcCCcEEecCCCCCHHHHHHHHHcCCC
Confidence 578899999999999999831 1 1224455666665433 3679999986654 6666677777 88
Q ss_pred ceee---------CCCCCCch
Q 006566 184 KIRV---------NPGNFADR 195 (640)
Q Consensus 184 KVRI---------NPGN~~d~ 195 (640)
.|=+ -||.+..+
T Consensus 222 ~VmiGt~fa~t~Es~g~~~~~ 242 (325)
T cd00381 222 AVMLGSLLAGTDESPGEYIEI 242 (325)
T ss_pred EEEecchhcccccCCCcEEEE
Confidence 8877 67776643
No 252
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=62.75 E-value=2.3e+02 Score=30.81 Aligned_cols=147 Identities=10% Similarity=0.070 Sum_probs=90.4
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEe-------------cCCHHHHHHHHHHHHHhhcCCCC---cceeeccCCCHHHHHH
Q 006566 114 TKDVAGTVEEVMRIADQGADLVRIT-------------VQGKREADACFEIKNSLVQKNYN---IPLVADIHFAPSVALR 177 (640)
Q Consensus 114 T~Dv~atv~Qi~rl~~aGceiVRvt-------------vp~~~~A~~l~~I~~~L~~~g~~---iPLVADIHF~~~~Al~ 177 (640)
-..++..++=+..|.++|.++|=++ .+...+.+.++.+.+.+....+. +|-.++ .+-...
T Consensus 20 ~f~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~----~~dl~~ 95 (333)
T TIGR03217 20 QFTIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRAKVAVLLLPGIGT----VHDLKA 95 (333)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCCCCEEEEEeccCccC----HHHHHH
Confidence 3567777888889999999999996 34445667777777764322221 122223 333456
Q ss_pred Hhhh-cCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCCChH
Q 006566 178 VAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPR 256 (640)
Q Consensus 178 Aa~~-v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGdtp~ 256 (640)
|.++ ++.|||- ... |+. +...+.++.+|++|.-+.+.. ..- +.-+|+
T Consensus 96 a~~~gvd~iri~-----~~~--------~e~----------d~~~~~i~~ak~~G~~v~~~l-----~~s----~~~~~e 143 (333)
T TIGR03217 96 AYDAGARTVRVA-----THC--------TEA----------DVSEQHIGMARELGMDTVGFL-----MMS----HMTPPE 143 (333)
T ss_pred HHHCCCCEEEEE-----ecc--------chH----------HHHHHHHHHHHHcCCeEEEEE-----Ecc----cCCCHH
Confidence 6677 9999963 111 011 136788999999997765433 221 223564
Q ss_pred HHHHHHHHHHHHHHHCCCCcEEEEEEeCChhhHHHHHHHHHHHHHH
Q 006566 257 GMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYV 302 (640)
Q Consensus 257 gMVeSAle~~~i~e~~~F~diviSmKsSn~~~mV~AyRlL~~~m~~ 302 (640)
. -++.++.+++.|-+ .|+++-|.=..+-+.++.++..+.+
T Consensus 144 ~----l~~~a~~~~~~Ga~--~i~i~DT~G~~~P~~v~~~v~~l~~ 183 (333)
T TIGR03217 144 K----LAEQAKLMESYGAD--CVYIVDSAGAMLPDDVRDRVRALKA 183 (333)
T ss_pred H----HHHHHHHHHhcCCC--EEEEccCCCCCCHHHHHHHHHHHHH
Confidence 4 45566777777766 5688887655555555555555543
No 253
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=62.71 E-value=23 Score=39.04 Aligned_cols=64 Identities=17% Similarity=0.166 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCHH--------HHHHHHHHHHHhhcCCCCcceee-ccCCCHHHHHHHhhh-cCceee
Q 006566 118 AGTVEEVMRIADQGADLVRITVQGKR--------EADACFEIKNSLVQKNYNIPLVA-DIHFAPSVALRVAEC-FDKIRV 187 (640)
Q Consensus 118 ~atv~Qi~rl~~aGceiVRvtvp~~~--------~A~~l~~I~~~L~~~g~~iPLVA-DIHF~~~~Al~Aa~~-v~KVRI 187 (640)
..+.+.++.|+++|+++|=+..-+.+ +.+.+.+++++ .++|+|| | -++++.|..+++. +|-|.+
T Consensus 141 ~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~-----~~ipVIaG~-V~t~e~A~~l~~aGAD~V~V 214 (368)
T PRK08649 141 QRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYE-----LDVPVIVGG-CVTYTTALHLMRTGAAGVLV 214 (368)
T ss_pred cCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHH-----CCCCEEEeC-CCCHHHHHHHHHcCCCEEEE
Confidence 34567888889999999988432211 34445555553 5799999 7 6999999999999 999986
No 254
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=62.68 E-value=47 Score=37.06 Aligned_cols=94 Identities=15% Similarity=0.180 Sum_probs=58.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCCCcceeeccC-CCHHHHHHHhh--hcCceeeCCCCC
Q 006566 116 DVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIH-FAPSVALRVAE--CFDKIRVNPGNF 192 (640)
Q Consensus 116 Dv~atv~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~iPLVADIH-F~~~~Al~Aa~--~v~KVRINPGN~ 192 (640)
+.+.+++-+++|.+.|-+.+==-+| .++-+.+.++++++. ..++|+.+|=+ |++.-....++ .++-|.+.|...
T Consensus 252 ~~~~A~~~~~~L~~~~l~~iEEP~~-~~d~~~~~~L~~~~~--~~~iPIa~gEs~~~~~~~~~ll~~~a~dil~~d~~~~ 328 (415)
T cd03324 252 DVPEAIEWVKQLAEFKPWWIEEPTS-PDDILGHAAIRKALA--PLPIGVATGEHCQNRVVFKQLLQAGAIDVVQIDSCRL 328 (415)
T ss_pred CHHHHHHHHHHhhccCCCEEECCCC-CCcHHHHHHHHHhcc--cCCCceecCCccCCHHHHHHHHHcCCCCEEEeCcccc
Confidence 4444555555555555443321111 123445555555310 01699999954 56655555554 499999999999
Q ss_pred CchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeE
Q 006566 193 ADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAV 234 (640)
Q Consensus 193 ~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aI 234 (640)
|.-.. +.++...|.++|+++
T Consensus 329 GGit~----------------------~~kia~lA~a~gi~~ 348 (415)
T cd03324 329 GGVNE----------------------NLAVLLMAAKFGVPV 348 (415)
T ss_pred CCHHH----------------------HHHHHHHHHHcCCeE
Confidence 97432 778999999999988
No 255
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=62.53 E-value=2.4e+02 Score=30.79 Aligned_cols=144 Identities=9% Similarity=0.036 Sum_probs=87.5
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEe-------------cCCHHHHHHHHHHHHHhhcCCCCcceee--ccCC-CHHHHHHH
Q 006566 115 KDVAGTVEEVMRIADQGADLVRIT-------------VQGKREADACFEIKNSLVQKNYNIPLVA--DIHF-APSVALRV 178 (640)
Q Consensus 115 ~Dv~atv~Qi~rl~~aGceiVRvt-------------vp~~~~A~~l~~I~~~L~~~g~~iPLVA--DIHF-~~~~Al~A 178 (640)
..++..++=+..|.++|.++|=++ .+...+.+.++.+++... + ..+.| +-.+ +.+-...|
T Consensus 22 f~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~~~--~--~~~~~ll~pg~~~~~dl~~a 97 (337)
T PRK08195 22 YTLEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEVVK--Q--AKIAALLLPGIGTVDDLKMA 97 (337)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHhCC--C--CEEEEEeccCcccHHHHHHH
Confidence 566777777888999999999995 222346677777766532 2 33332 2111 34445677
Q ss_pred hhh-cCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCCChHH
Q 006566 179 AEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRG 257 (640)
Q Consensus 179 a~~-v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGdtp~g 257 (640)
+++ ++-|||- .... + .+...+.++.+|++|.-+.+.. .+- +.-+|+.
T Consensus 98 ~~~gvd~iri~-----~~~~--------e----------~~~~~~~i~~ak~~G~~v~~~l-----~~a----~~~~~e~ 145 (337)
T PRK08195 98 YDAGVRVVRVA-----THCT--------E----------ADVSEQHIGLARELGMDTVGFL-----MMS----HMAPPEK 145 (337)
T ss_pred HHcCCCEEEEE-----Eecc--------h----------HHHHHHHHHHHHHCCCeEEEEE-----Eec----cCCCHHH
Confidence 777 9999973 1110 1 1247889999999998776554 211 2235644
Q ss_pred HHHHHHHHHHHHHHCCCCcEEEEEEeCChhhHHHHHHHHHHHH
Q 006566 258 MVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEM 300 (640)
Q Consensus 258 MVeSAle~~~i~e~~~F~diviSmKsSn~~~mV~AyRlL~~~m 300 (640)
+ +++++.+++.|-+ .|+++-|.=..+=+..+.++..+
T Consensus 146 l----~~~a~~~~~~Ga~--~i~i~DT~G~~~P~~v~~~v~~l 182 (337)
T PRK08195 146 L----AEQAKLMESYGAQ--CVYVVDSAGALLPEDVRDRVRAL 182 (337)
T ss_pred H----HHHHHHHHhCCCC--EEEeCCCCCCCCHHHHHHHHHHH
Confidence 4 4567777888866 47888775444444444444444
No 256
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=62.36 E-value=85 Score=30.69 Aligned_cols=129 Identities=16% Similarity=0.149 Sum_probs=78.8
Q ss_pred HHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhh----h-cCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHH
Q 006566 147 ACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAE----C-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFS 221 (640)
Q Consensus 147 ~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~----~-v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~ 221 (640)
...-+++.+++.|+.+=++.|-.+++..-...++ . +|.|=++|-+-.. ..
T Consensus 16 ~~~g~~~~a~~~g~~~~~~~~~~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~~~-------------------------~~ 70 (257)
T PF13407_consen 16 VIKGAKAAAKELGYEVEIVFDAQNDPEEQIEQIEQAISQGVDGIIVSPVDPDS-------------------------LA 70 (257)
T ss_dssp HHHHHHHHHHHHTCEEEEEEESTTTHHHHHHHHHHHHHTTESEEEEESSSTTT-------------------------TH
T ss_pred HHHHHHHHHHHcCCEEEEeCCCCCCHHHHHHHHHHHHHhcCCEEEecCCCHHH-------------------------HH
Confidence 3445566666667776666788888765554444 2 7778888877643 56
Q ss_pred HHHHHHHHcCCeEEEeeCCC-CCcHhHHHHhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEEeCChhhHHHHHHHHHHHH
Q 006566 222 PLVEKCKKYGRAVRIGTNHG-SLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEM 300 (640)
Q Consensus 222 ~lV~~~Ke~g~aIRIGvNhG-SLs~ril~ryGdtp~gMVeSAle~~~i~e~~~F~diviSmKsSn~~~mV~AyRlL~~~m 300 (640)
++++.|++.|+|+ |-+|.+ ..+.......|..+..+-..+.+++.=.-..+ .++++..=..+...+.+-++-+.+.|
T Consensus 71 ~~l~~~~~~gIpv-v~~d~~~~~~~~~~~~v~~d~~~~G~~~a~~l~~~~~~~-~~v~~~~~~~~~~~~~~r~~g~~~~l 148 (257)
T PF13407_consen 71 PFLEKAKAAGIPV-VTVDSDEAPDSPRAAYVGTDNYEAGKLAAEYLAEKLGAK-GKVLILSGSPGNPNTQERLEGFRDAL 148 (257)
T ss_dssp HHHHHHHHTTSEE-EEESSTHHTTSTSSEEEEE-HHHHHHHHHHHHHHHHTTT-EEEEEEESSTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCceE-EEEeccccccccceeeeeccHHHHHHHHHHHHHHHhccC-ceEEeccCCCCchHHHHHHHHHHHHH
Confidence 7899999999999 778888 44444455556456666666655554333333 55555532333233333444466666
Q ss_pred HH
Q 006566 301 YV 302 (640)
Q Consensus 301 ~~ 302 (640)
.+
T Consensus 149 ~~ 150 (257)
T PF13407_consen 149 KE 150 (257)
T ss_dssp HH
T ss_pred hh
Confidence 55
No 257
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=62.34 E-value=84 Score=32.11 Aligned_cols=113 Identities=17% Similarity=0.165 Sum_probs=85.9
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhhcCceeeCCCCCCc
Q 006566 115 KDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFAD 194 (640)
Q Consensus 115 ~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~v~KVRINPGN~~d 194 (640)
.|.+.+++.++.|.+.|...+=||-.+....+.+++++++.. ++-+=|=-=.++.-|..|++.=.+.=+-|+ + +
T Consensus 13 ~~~~~a~~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~~~----~~~vGAGTVl~~e~a~~ai~aGA~FivSP~-~-~ 86 (201)
T PRK06015 13 DDVEHAVPLARALAAGGLPAIEITLRTPAALDAIRAVAAEVE----EAIVGAGTILNAKQFEDAAKAGSRFIVSPG-T-T 86 (201)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHCC----CCEEeeEeCcCHHHHHHHHHcCCCEEECCC-C-C
Confidence 478999999999999999999999999999999999988621 244445556789999999888444557775 2 2
Q ss_pred hhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCCChHHHHHHHHHHHHHHHHCCC
Q 006566 195 RRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDF 274 (640)
Q Consensus 195 ~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGdtp~gMVeSAle~~~i~e~~~F 274 (640)
.++++.|+++|++.==|+ -||-. +.-+.++|+
T Consensus 87 --------------------------~~vi~~a~~~~i~~iPG~--------------~TptE--------i~~A~~~Ga 118 (201)
T PRK06015 87 --------------------------QELLAAANDSDVPLLPGA--------------ATPSE--------VMALREEGY 118 (201)
T ss_pred --------------------------HHHHHHHHHcCCCEeCCC--------------CCHHH--------HHHHHHCCC
Confidence 358999999999984443 47743 334678899
Q ss_pred CcEEEEE
Q 006566 275 HNFLFSM 281 (640)
Q Consensus 275 ~diviSm 281 (640)
+-++|-=
T Consensus 119 ~~vK~FP 125 (201)
T PRK06015 119 TVLKFFP 125 (201)
T ss_pred CEEEECC
Confidence 8887763
No 258
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=62.31 E-value=40 Score=32.66 Aligned_cols=95 Identities=19% Similarity=0.220 Sum_probs=61.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecCCHHH--HHHHHHHHHHhhcCCCCcceeeccCCC-H--HHHHHHhhh-cCcee
Q 006566 113 DTKDVAGTVEEVMRIADQGADLVRITVQGKRE--ADACFEIKNSLVQKNYNIPLVADIHFA-P--SVALRVAEC-FDKIR 186 (640)
Q Consensus 113 ~T~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~--A~~l~~I~~~L~~~g~~iPLVADIHF~-~--~~Al~Aa~~-v~KVR 186 (640)
|..|.+.+.+-++.|.+. .+.+.+..|-... -+.++.|++ ...++|+++|.=+. | ..+..++++ ++-|=
T Consensus 8 d~~~~~~~~~~~~~l~~~-i~~ieig~~~~~~~g~~~i~~i~~----~~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~ 82 (202)
T cd04726 8 DLLDLEEALELAKKVPDG-VDIIEAGTPLIKSEGMEAVRALRE----AFPDKIIVADLKTADAGALEAEMAFKAGADIVT 82 (202)
T ss_pred cCCCHHHHHHHHHHhhhc-CCEEEcCCHHHHHhCHHHHHHHHH----HCCCCEEEEEEEeccccHHHHHHHHhcCCCEEE
Confidence 677889999999999999 9999997665432 234444444 34579998883322 2 245666666 66554
Q ss_pred eCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEee
Q 006566 187 VNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT 238 (640)
Q Consensus 187 INPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGv 238 (640)
+..-. .. +...++++.||++|+. +|+
T Consensus 83 ~h~~~--~~----------------------~~~~~~i~~~~~~g~~--~~v 108 (202)
T cd04726 83 VLGAA--PL----------------------STIKKAVKAAKKYGKE--VQV 108 (202)
T ss_pred EEeeC--CH----------------------HHHHHHHHHHHHcCCe--EEE
Confidence 43211 00 1256689999999864 475
No 259
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=62.23 E-value=27 Score=36.68 Aligned_cols=80 Identities=23% Similarity=0.362 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhh-cCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHH
Q 006566 144 EADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSP 222 (640)
Q Consensus 144 ~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~-v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~ 222 (640)
..+.|+.+.++|++.|+.+-|--|= ++.-...|.+. ++.|=+.-|.|++.. ++++.++|+++|.+
T Consensus 108 ~~~~l~~~i~~l~~~gI~VSLFiDP--d~~qi~~A~~~GAd~VELhTG~Ya~a~--------~~~~~~~el~~i~~---- 173 (234)
T cd00003 108 QAEKLKPIIERLKDAGIRVSLFIDP--DPEQIEAAKEVGADRVELHTGPYANAY--------DKAEREAELERIAK---- 173 (234)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEeCC--CHHHHHHHHHhCcCEEEEechhhhcCC--------CchhHHHHHHHHHH----
Confidence 5677888888899999988887763 35555677777 999999999999832 34556677777644
Q ss_pred HHHHHHHcCCeEEEeeCCC
Q 006566 223 LVEKCKKYGRAVRIGTNHG 241 (640)
Q Consensus 223 lV~~~Ke~g~aIRIGvNhG 241 (640)
-.+.|++.|. +||.|
T Consensus 174 aa~~a~~~GL----~VnAG 188 (234)
T cd00003 174 AAKLARELGL----GVNAG 188 (234)
T ss_pred HHHHHHHcCC----EEecC
Confidence 5677777774 67776
No 260
>COG2877 KdsA 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase [Cell envelope biogenesis, outer membrane]
Probab=62.04 E-value=21 Score=37.96 Aligned_cols=170 Identities=22% Similarity=0.412 Sum_probs=101.3
Q ss_pred eeEEEceeecCCCCceE-EEeccCCCCCCHH-HHHHHHHHH-HHcCCCEEEEe--------------cCCHHH-HHHHHH
Q 006566 89 RTVMVGNVAIGSEHPIR-VQTMTTNDTKDVA-GTVEEVMRI-ADQGADLVRIT--------------VQGKRE-ADACFE 150 (640)
Q Consensus 89 r~V~VG~v~IGG~~PI~-VQSMt~t~T~Dv~-atv~Qi~rl-~~aGceiVRvt--------------vp~~~~-A~~l~~ 150 (640)
..|++|++.+|.+.|.. |--|+--.++|.. .+-++++++ ...|-++|==+ =|+.++ -+.|.+
T Consensus 3 ~~vk~g~i~~~n~~~~~LiaGpcviEs~d~a~~~a~~lk~~t~~lgi~~vfKsSfDKANRsSi~s~RGpGLeeglki~~~ 82 (279)
T COG2877 3 KVVKVGDIVIGNDLPFVLIAGPCVIESRDLALEIAEHLKELTEKLGIPYVFKSSFDKANRSSIHSYRGPGLEEGLKILQE 82 (279)
T ss_pred ceEEeCCEEecCCCceEEEeccceeccHHHHHHHHHHHHHHHhccCCceEEecccccccccccccccCCCHHHHHHHHHH
Confidence 57999999999987754 3444444444432 222233333 36788887443 245544 578899
Q ss_pred HHHHhhcCCCCcceeeccCCCHHHHHHHhhhcCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHc
Q 006566 151 IKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKY 230 (640)
Q Consensus 151 I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~ 230 (640)
||++ +.+|++.|||=..... .+++.||=+-|- .|-- |=+.|+..|-+-
T Consensus 83 vK~e-----fgv~ilTDVHe~~q~~-~vA~VvDilQiP--AFLc------------------------RQTDLl~A~AkT 130 (279)
T COG2877 83 VKEE-----FGVPILTDVHEPSQAQ-PVAEVVDVLQIP--AFLC------------------------RQTDLLVAAAKT 130 (279)
T ss_pred HHHH-----cCCceeeccCChhhcc-hHHhhhhhhcch--HHHh------------------------hhHHHHHHHHHh
Confidence 9996 9999999999866655 555777766662 1111 235677888888
Q ss_pred CCeEEEeeCCCCCcHhHHHHhCCChHH---HHHHHHHH----HHHHH---HCCCCcEEEEEEeCChhhHHHHHHHHHHHH
Q 006566 231 GRAVRIGTNHGSLSDRIMSYYGDSPRG---MVESAFEF----ARICR---KLDFHNFLFSMKASNPVVMVQAYRLLVAEM 300 (640)
Q Consensus 231 g~aIRIGvNhGSLs~ril~ryGdtp~g---MVeSAle~----~~i~e---~~~F~diviSmKsSn~~~mV~AyRlL~~~m 300 (640)
|.+|-| --|-. -.|-. .|+.++|. +=+|| ..||+|.|+-|.|= ..|
T Consensus 131 g~~vNi--KKgQF---------LaPwdMknvv~K~~~~gn~~v~lcERG~sFGYnnLV~DMrsl-------------~iM 186 (279)
T COG2877 131 GAVVNV--KKGQF---------LAPWDMKNIVEKFLETGNNKVILCERGASFGYNNLVVDMRSL-------------PIM 186 (279)
T ss_pred CCeEee--ccccc---------cChhHhhhHHHHHHhcCCCcEEEEeccCccCcchhHHHhhhh-------------HHH
Confidence 888744 22221 13323 34444432 22344 36777776655442 123
Q ss_pred HHcCCCcceEEEeecC
Q 006566 301 YVHGWDYPLHLGVTEA 316 (640)
Q Consensus 301 ~~~g~dyPLHLGVTEA 316 (640)
.+ +.+|.-+-+|-+
T Consensus 187 ~~--~~~PViFDaTHS 200 (279)
T COG2877 187 KE--FGAPVIFDATHS 200 (279)
T ss_pred HH--cCCCeEEecccc
Confidence 33 349998888876
No 261
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=61.99 E-value=14 Score=37.68 Aligned_cols=75 Identities=16% Similarity=0.073 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHcCCCEEEE-----ecCCHHHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhh-cCceeeCCCCC
Q 006566 119 GTVEEVMRIADQGADLVRI-----TVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGNF 192 (640)
Q Consensus 119 atv~Qi~rl~~aGceiVRv-----tvp~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~-v~KVRINPGN~ 192 (640)
-|++|....++|||++|-. .-.+..-.+.+++|.+-+++.|+++.++|=--=++.-+++++.. +|-|=|-|--+
T Consensus 110 fs~~Qa~~Aa~aGa~yispyvgRi~d~g~dg~~~v~~~~~~~~~~~~~tkIlaAS~r~~~~v~~~~~~G~d~vTip~~vl 189 (213)
T TIGR00875 110 FSAAQALLAAKAGATYVSPFVGRLDDIGGDGMKLIEEVKTIFENHAPDTEVIAASVRHPRHVLEAALIGADIATMPLDVM 189 (213)
T ss_pred cCHHHHHHHHHcCCCEEEeecchHHHcCCCHHHHHHHHHHHHHHcCCCCEEEEeccCCHHHHHHHHHcCCCEEEcCHHHH
Confidence 4688999999999999844 44455667888999999999999999998888899999999888 99999988766
Q ss_pred C
Q 006566 193 A 193 (640)
Q Consensus 193 ~ 193 (640)
.
T Consensus 190 ~ 190 (213)
T TIGR00875 190 Q 190 (213)
T ss_pred H
Confidence 4
No 262
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=61.80 E-value=99 Score=32.79 Aligned_cols=50 Identities=20% Similarity=0.256 Sum_probs=37.3
Q ss_pred hHHHHHHHHHH-cCC-eEEEeeCCCCCcHhHHHHhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEEeCChh
Q 006566 219 VFSPLVEKCKK-YGR-AVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPV 287 (640)
Q Consensus 219 ~f~~lV~~~Ke-~g~-aIRIGvNhGSLs~ril~ryGdtp~gMVeSAle~~~i~e~~~F~diviSmKsSn~~ 287 (640)
.|.++++.+++ .|+ .+.|-|| |++-+ ++++.+.+.|...+.||+.+.++.
T Consensus 75 ~l~~li~~i~~~~gi~~v~itTN-G~ll~------------------~~~~~L~~~gl~~v~ISld~~~~~ 126 (334)
T TIGR02666 75 DLVELVARLAALPGIEDIALTTN-GLLLA------------------RHAKDLKEAGLKRVNVSLDSLDPE 126 (334)
T ss_pred CHHHHHHHHHhcCCCCeEEEEeC-chhHH------------------HHHHHHHHcCCCeEEEecccCCHH
Confidence 37788888777 577 7888887 66532 134567788999999999998753
No 263
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=61.50 E-value=24 Score=37.10 Aligned_cols=80 Identities=25% Similarity=0.324 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhh-cCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHH
Q 006566 143 READACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFS 221 (640)
Q Consensus 143 ~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~-v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~ 221 (640)
+..+.|+.+.++|++.|+.+-|-.| =++.-...|.+. ++.|=+.-|.|++. |. .+. .+||++| .
T Consensus 110 ~~~~~l~~~i~~L~~~gIrVSLFid--P~~~qi~~A~~~GAd~VELhTG~yA~a---~~-----~~~-~~el~~~----~ 174 (239)
T PRK05265 110 GQFDKLKPAIARLKDAGIRVSLFID--PDPEQIEAAAEVGADRIELHTGPYADA---KT-----EAE-AAELERI----A 174 (239)
T ss_pred cCHHHHHHHHHHHHHCCCEEEEEeC--CCHHHHHHHHHhCcCEEEEechhhhcC---CC-----cch-HHHHHHH----H
Confidence 3567888889999999999999887 445555567777 99999999999984 21 112 4455544 4
Q ss_pred HHHHHHHHcCCeEEEeeCCC
Q 006566 222 PLVEKCKKYGRAVRIGTNHG 241 (640)
Q Consensus 222 ~lV~~~Ke~g~aIRIGvNhG 241 (640)
.-.+.|+++|. +||.|
T Consensus 175 ~aa~~a~~lGL----~VnAG 190 (239)
T PRK05265 175 KAAKLAASLGL----GVNAG 190 (239)
T ss_pred HHHHHHHHcCC----EEecC
Confidence 46788888874 67766
No 264
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=60.76 E-value=2.3e+02 Score=30.21 Aligned_cols=163 Identities=15% Similarity=0.213 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCCEEEEecCCHHHHH--------------HH----------------------HHHHHHhhcCCCCcc
Q 006566 120 TVEEVMRIADQGADLVRITVQGKREAD--------------AC----------------------FEIKNSLVQKNYNIP 163 (640)
Q Consensus 120 tv~Qi~rl~~aGceiVRvtvp~~~~A~--------------~l----------------------~~I~~~L~~~g~~iP 163 (640)
|+.+++++.+.|--|+=+|+-|.-.|. .+ +.|.+ +.+.|
T Consensus 3 t~~~lr~~~~~g~~i~~~tayD~~sArl~e~aG~d~i~vGds~~~~~lG~~Dt~~vtl~em~~h~~~V~r-----~~~~p 77 (264)
T PRK00311 3 TISDLQKMKQEGEKIVMLTAYDYPFAKLFDEAGVDVILVGDSLGMVVLGYDSTLPVTLDDMIYHTKAVAR-----GAPRA 77 (264)
T ss_pred CHHHHHHHHhCCCCEEEEeCCCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHh-----cCCCC
Q ss_pred -eeeccCCC------HHHHHHHhhhcCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeE--
Q 006566 164 -LVADIHFA------PSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAV-- 234 (640)
Q Consensus 164 -LVADIHF~------~~~Al~Aa~~v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aI-- 234 (640)
+|||+=|. .++...|.+.++..-..==|+-|... ..+.|+.+.+.|+|+
T Consensus 78 ~vvaD~pfg~y~~~~~~av~~a~r~~~~aGa~aVkiEdg~~----------------------~~~~I~al~~agIpV~g 135 (264)
T PRK00311 78 LVVADMPFGSYQASPEQALRNAGRLMKEAGAHAVKLEGGEE----------------------VAETIKRLVERGIPVMG 135 (264)
T ss_pred cEEEeCCCCCccCCHHHHHHHHHHHHHHhCCeEEEEcCcHH----------------------HHHHHHHHHHCCCCEee
Q ss_pred EEeeCCCCC-cHhHHHHhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEEeCChhhHHHHHHHHHHHHHHcCCCcce-EEE
Q 006566 235 RIGTNHGSL-SDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPL-HLG 312 (640)
Q Consensus 235 RIGvNhGSL-s~ril~ryGdtp~gMVeSAle~~~i~e~~~F~diviSmKsSn~~~mV~AyRlL~~~m~~~g~dyPL-HLG 312 (640)
=||.|-=|- ...=...-|.|.+. .+.++|-++-+++.|=.=+++- -+--+.-+.+.++ .+-|+ =+|
T Consensus 136 HiGL~pq~~~~~gg~~i~grt~~~-a~~~i~ra~a~~eAGA~~i~lE------~v~~~~~~~i~~~-----l~iP~igiG 203 (264)
T PRK00311 136 HLGLTPQSVNVLGGYKVQGRDEEA-AEKLLEDAKALEEAGAFALVLE------CVPAELAKEITEA-----LSIPTIGIG 203 (264)
T ss_pred eecccceeecccCCeeeecCCHHH-HHHHHHHHHHHHHCCCCEEEEc------CCCHHHHHHHHHh-----CCCCEEEec
Q ss_pred eecCCCCCccee
Q 006566 313 VTEAGEGEDGRM 324 (640)
Q Consensus 313 VTEAG~gedGrI 324 (640)
||..-||+|
T Consensus 204 ---aG~~~dgqv 212 (264)
T PRK00311 204 ---AGPDCDGQV 212 (264)
T ss_pred ---cCCCCCcee
No 265
>PLN02623 pyruvate kinase
Probab=60.59 E-value=1e+02 Score=36.46 Aligned_cols=154 Identities=16% Similarity=0.217 Sum_probs=102.2
Q ss_pred HHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHH----hhhcCceeeCCCCCCch
Q 006566 120 TVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRV----AECFDKIRVNPGNFADR 195 (640)
Q Consensus 120 tv~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~A----a~~v~KVRINPGN~~d~ 195 (640)
-.+-|+-..+.|+|+| ++-=.+.|+.+.++++.|.+.+-++.++|=|-=. -|++- ++.+|.|=|-||.++-.
T Consensus 280 D~~di~f~~~~~vD~i--alSFVr~a~DV~~~r~~l~~~~~~~~iiakIEt~--eaVeNldeIl~g~DgImIgrgDLgve 355 (581)
T PLN02623 280 DWEDIKFGVENKVDFY--AVSFVKDAQVVHELKDYLKSCNADIHVIVKIESA--DSIPNLHSIITASDGAMVARGDLGAE 355 (581)
T ss_pred HHHHHHHHHHcCCCEE--EECCCCCHHHHHHHHHHHHHcCCcceEEEEECCH--HHHHhHHHHHHhCCEEEECcchhhhh
Confidence 3344556667899995 5445567777777777777778889999987432 22221 12599999999999863
Q ss_pred hhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhC--CCh-HHHHHHHHHHHHHHHHC
Q 006566 196 RAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYG--DSP-RGMVESAFEFARICRKL 272 (640)
Q Consensus 196 ~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryG--dtp-~gMVeSAle~~~i~e~~ 272 (640)
-. ++++.+..+.+++.|+++|+|. |+-. .+|+-.- .+| .+=| ..+.-+...
T Consensus 356 lg---------------~~~v~~~qk~Ii~~~~~~gKpv--ivaT-----QMLESMi~~~~PTRAEv----~Dva~av~d 409 (581)
T PLN02623 356 LP---------------IEEVPLLQEEIIRRCRSMGKPV--IVAT-----NMLESMIVHPTPTRAEV----SDIAIAVRE 409 (581)
T ss_pred cC---------------cHHHHHHHHHHHHHHHHhCCCE--EEEC-----chhhhcccCCCCCchhH----HHHHHHHHc
Confidence 21 2555666788999999999999 5411 2222221 122 1111 245556778
Q ss_pred CCCcEEEEEE---eCChhhHHHHHHHHHHHHHHc
Q 006566 273 DFHNFLFSMK---ASNPVVMVQAYRLLVAEMYVH 303 (640)
Q Consensus 273 ~F~diviSmK---sSn~~~mV~AyRlL~~~m~~~ 303 (640)
||+=+.+|-- --.|...|+..+.++.+.++.
T Consensus 410 G~d~vmLs~Eta~G~yPveaV~~m~~I~~~aE~~ 443 (581)
T PLN02623 410 GADAVMLSGETAHGKFPLKAVKVMHTVALRTEAT 443 (581)
T ss_pred CCCEEEecchhhcCcCHHHHHHHHHHHHHHHHhh
Confidence 9999999864 456778888888888887653
No 266
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=60.34 E-value=44 Score=34.35 Aligned_cols=63 Identities=16% Similarity=0.156 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHcCCCEEEEecC--C-HHHHHHHHHHHHHhhcCCCCcceeeccCC--CHHHHHHHhhhcCc
Q 006566 119 GTVEEVMRIADQGADLVRITVQ--G-KREADACFEIKNSLVQKNYNIPLVADIHF--APSVALRVAECFDK 184 (640)
Q Consensus 119 atv~Qi~rl~~aGceiVRvtvp--~-~~~A~~l~~I~~~L~~~g~~iPLVADIHF--~~~~Al~Aa~~v~K 184 (640)
..++++++..+.|...+.+-+- + .++.+.++.|++.+ |-++.|..|-|- ++.-|+..++.++.
T Consensus 85 ~~~~~~~~~~~~Gf~~~KiKvg~~~~~~d~~~v~~vr~~~---g~~~~l~vDaN~~w~~~~A~~~~~~l~~ 152 (263)
T cd03320 85 AALGEAKAAYGGGYRTVKLKVGATSFEEDLARLRALREAL---PADAKLRLDANGGWSLEEALAFLEALAA 152 (263)
T ss_pred HHHHHHHHHHhCCCCEEEEEECCCChHHHHHHHHHHHHHc---CCCCeEEEeCCCCCCHHHHHHHHHhhcc
Confidence 5678889999999999998762 2 57788899998853 557899999874 55666666665554
No 267
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=60.31 E-value=2.7e+02 Score=30.85 Aligned_cols=151 Identities=18% Similarity=0.231 Sum_probs=81.9
Q ss_pred EEeccCCCC-CCHHHHHHHHHHHHHc-CCCEEEEecCCH------HHHHHHHHHHHHhhcCCCCc-ceeeccCCCHHHHH
Q 006566 106 VQTMTTNDT-KDVAGTVEEVMRIADQ-GADLVRITVQGK------READACFEIKNSLVQKNYNI-PLVADIHFAPSVAL 176 (640)
Q Consensus 106 VQSMt~t~T-~Dv~atv~Qi~rl~~a-GceiVRvtvp~~------~~A~~l~~I~~~L~~~g~~i-PLVADIHF~~~~Al 176 (640)
+.=|-||.- +..+..|.-.+--.++ |.+.|-+-|-+. +-.+.++. .+.|.++|..+ |.++| ||..|.
T Consensus 137 ~~~lpNTag~~ta~eAv~~a~lare~~~~~~iKlEvi~e~~~llpd~~~~v~a-a~~L~~~Gf~v~~yc~~---d~~~a~ 212 (326)
T PRK11840 137 YTYLPNTAGCYTAEEAVRTLRLAREAGGWDLVKLEVLGDAKTLYPDMVETLKA-TEILVKEGFQVMVYCSD---DPIAAK 212 (326)
T ss_pred CEECccCCCCCCHHHHHHHHHHHHHhcCCCeEEEEEcCCCCCcccCHHHHHHH-HHHHHHCCCEEEEEeCC---CHHHHH
Confidence 344555543 3334433332222233 567777665442 11122222 22355568887 88887 566766
Q ss_pred HHhhh-cCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCCCh
Q 006566 177 RVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSP 255 (640)
Q Consensus 177 ~Aa~~-v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGdtp 255 (640)
..++. +..|.-=|-=||.+.. .++.+| ++.+++. .++|+=+|.-- .+|
T Consensus 213 ~l~~~g~~avmPl~~pIGsg~g------v~~p~~----------i~~~~e~---~~vpVivdAGI------------g~~ 261 (326)
T PRK11840 213 RLEDAGAVAVMPLGAPIGSGLG------IQNPYT----------IRLIVEG---ATVPVLVDAGV------------GTA 261 (326)
T ss_pred HHHhcCCEEEeeccccccCCCC------CCCHHH----------HHHHHHc---CCCcEEEeCCC------------CCH
Confidence 66665 5334433455555432 112222 3333443 46888888733 345
Q ss_pred HHHHHHHHHHHHHHHHCCCCcEEEE---EEeCChhhHHHHHHHHHHH
Q 006566 256 RGMVESAFEFARICRKLDFHNFLFS---MKASNPVVMVQAYRLLVAE 299 (640)
Q Consensus 256 ~gMVeSAle~~~i~e~~~F~diviS---mKsSn~~~mV~AyRlL~~~ 299 (640)
+.+..+-++|++-+.+- +||.||..|-+|+++-++.
T Consensus 262 --------sda~~AmelGadgVL~nSaIa~a~dPv~Ma~A~~~av~a 300 (326)
T PRK11840 262 --------SDAAVAMELGCDGVLMNTAIAEAKNPVLMARAMKLAVEA 300 (326)
T ss_pred --------HHHHHHHHcCCCEEEEcceeccCCCHHHHHHHHHHHHHH
Confidence 24455557899755431 5999999999999997753
No 268
>PTZ00300 pyruvate kinase; Provisional
Probab=60.17 E-value=54 Score=37.42 Aligned_cols=154 Identities=19% Similarity=0.217 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHH----HHhhhcCceeeCCCCCC
Q 006566 118 AGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVAL----RVAECFDKIRVNPGNFA 193 (640)
Q Consensus 118 ~atv~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al----~Aa~~v~KVRINPGN~~ 193 (640)
+.-.+.|....+.|+|.| ++|=.+.|+-+.++++.+.+.|.++++||=|-= .-|+ +=++.+|.|=|-||.++
T Consensus 147 ekD~~dI~~ald~gvd~I--~~SfVrsaeDv~~vr~~l~~~~~~~~IiaKIEt--~eav~nldeI~~~~DgImVaRGDLg 222 (454)
T PTZ00300 147 AKDCADLQFGVEQGVDMI--FASFIRSAEQVGEVRKALGAKGGDIMIICKIEN--HQGVQNIDSIIEESDGIMVARGDLG 222 (454)
T ss_pred hhhHHHHHHHHHCCCCEE--EECCCCCHHHHHHHHHHHHhcCCCceEEEEECC--HHHHHhHHHHHHhCCEEEEecchhh
Confidence 455566788889999994 677777777777778777777888999998842 2222 22255999999999998
Q ss_pred chhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhC--CChHHHHHHHHHHHHHHH-
Q 006566 194 DRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYG--DSPRGMVESAFEFARICR- 270 (640)
Q Consensus 194 d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryG--dtp~gMVeSAle~~~i~e- 270 (640)
-.- - ++++-..-+.++++|+++|+|+=+.|+ +|+-.= ..| +=-|--++..
T Consensus 223 vei--------~-------~e~vp~~Qk~Ii~~~~~~gkpvI~ATQ-------mLeSM~~~p~P-----TRAEvsDVanA 275 (454)
T PTZ00300 223 VEI--------P-------AEKVVVAQKILISKCNVAGKPVICATQ-------MLESMTYNPRP-----TRAEVSDVANA 275 (454)
T ss_pred hhc--------C-------hHHHHHHHHHHHHHHHHcCCCEEEECc-------hHHHHhhCCCC-----CchhHHHHHHH
Confidence 622 1 344555667799999999999977773 222111 111 0013333333
Q ss_pred -HCCCCcEEEEEEe---CChhhHHHHHHHHHHHHHH
Q 006566 271 -KLDFHNFLFSMKA---SNPVVMVQAYRLLVAEMYV 302 (640)
Q Consensus 271 -~~~F~diviSmKs---Sn~~~mV~AyRlL~~~m~~ 302 (640)
--|.+-+.+|--+ ..|...|+..+..+.+.++
T Consensus 276 v~dG~DavMLS~ETA~G~yP~eaV~~m~~I~~~aE~ 311 (454)
T PTZ00300 276 VFNGADCVMLSGETAKGKYPNEVVQYMARICLEAQS 311 (454)
T ss_pred HHhCCcEEEEechhcCCCCHHHHHHHHHHHHHHHHh
Confidence 3588889997544 5677788888888877654
No 269
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=60.05 E-value=1.4e+02 Score=32.27 Aligned_cols=140 Identities=16% Similarity=0.096 Sum_probs=75.5
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCH-----HHHHHHHHHHHHhhcCC--CCcce-eeccCCCHHHHHHHhhh-cCcee
Q 006566 116 DVAGTVEEVMRIADQGADLVRITVQGK-----READACFEIKNSLVQKN--YNIPL-VADIHFAPSVALRVAEC-FDKIR 186 (640)
Q Consensus 116 Dv~atv~Qi~rl~~aGceiVRvtvp~~-----~~A~~l~~I~~~L~~~g--~~iPL-VADIHF~~~~Al~Aa~~-v~KVR 186 (640)
|.+..+++++++.+.|+.-|=||..+. ..++.+.++.+.|++.. +.+-+ +.|..-+..+...-.++ ++-+
T Consensus 92 ~~eei~~~a~~~~~~GlkevvLTsv~~ddl~d~g~~~l~~li~~I~~~~p~i~Ievl~~d~~g~~e~l~~l~~aG~dv~- 170 (302)
T TIGR00510 92 DPEEPAKLAETIKDMGLKYVVITSVDRDDLEDGGASHLAECIEAIREKLPNIKIETLVPDFRGNIAALDILLDAPPDVY- 170 (302)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEeecCCCcccccHHHHHHHHHHHHhcCCCCEEEEeCCcccCCHHHHHHHHHcCchhh-
Confidence 678889999999999999999996543 22445555555555532 22322 22322133322222222 3222
Q ss_pred eCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHc--CCeEEEeeCCCCCcHhHHHHhCCChHHHHHHHHH
Q 006566 187 VNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKY--GRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFE 264 (640)
Q Consensus 187 INPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~--g~aIRIGvNhGSLs~ril~ryGdtp~gMVeSAle 264 (640)
+.|+-...+-|... -. ..-.+++.++++.+|+. |+.+.-|. |-=+|-|.+.+ .+
T Consensus 171 --~hnlEt~~~l~~~v-rr--------~~t~e~~Le~l~~ak~~~pgi~~~Tgi---------IVGlGETeee~----~e 226 (302)
T TIGR00510 171 --NHNLETVERLTPFV-RP--------GATYRWSLKLLERAKEYLPNLPTKSGI---------MVGLGETNEEI----KQ 226 (302)
T ss_pred --cccccchHHHHHHh-CC--------CCCHHHHHHHHHHHHHhCCCCeecceE---------EEECCCCHHHH----HH
Confidence 22221111111110 00 01123467788889998 66665444 22236777544 45
Q ss_pred HHHHHHHCCCCcEEEE
Q 006566 265 FARICRKLDFHNFLFS 280 (640)
Q Consensus 265 ~~~i~e~~~F~diviS 280 (640)
.++.+++.||+-+.|.
T Consensus 227 tl~~Lrelg~d~v~ig 242 (302)
T TIGR00510 227 TLKDLRDHGVTMVTLG 242 (302)
T ss_pred HHHHHHhcCCCEEEee
Confidence 6778889999888775
No 270
>TIGR01060 eno phosphopyruvate hydratase. Alternate name: enolase
Probab=59.52 E-value=32 Score=38.42 Aligned_cols=74 Identities=20% Similarity=0.214 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHhhcCCCCcceeeccCC--CHHHHHHHhhh--cCceeeCCCCCCchhhhccccccchHHHHHHHhhhHh
Q 006566 143 READACFEIKNSLVQKNYNIPLVADIHF--APSVALRVAEC--FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEE 218 (640)
Q Consensus 143 ~~A~~l~~I~~~L~~~g~~iPLVADIHF--~~~~Al~Aa~~--v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~ 218 (640)
++.+.+.++++++ |-.+||++|=.| ++.-+..+++. ++-|.|-|..+|.-..
T Consensus 290 ~D~~~~~~L~~~~---~~~ipI~gDE~~~t~~~~~~~~i~~~a~d~v~ik~~~iGGIte--------------------- 345 (425)
T TIGR01060 290 EDWEGWAELTKEL---GDKVQIVGDDLFVTNTEILREGIEMGVANSILIKPNQIGTLTE--------------------- 345 (425)
T ss_pred ccHHHHHHHHHhc---CCCCeEEeCCCcccCHHHHHHHHHhCCCCEEEecccccCCHHH---------------------
Confidence 4567777777741 227999999865 68888888774 9999999999998443
Q ss_pred hHHHHHHHHHHcCCeEEEeeCCCCC
Q 006566 219 VFSPLVEKCKKYGRAVRIGTNHGSL 243 (640)
Q Consensus 219 ~f~~lV~~~Ke~g~aIRIGvNhGSL 243 (640)
..++++.|+++|+.+= +.|.|.
T Consensus 346 -a~~ia~lA~~~Gi~~v--v~h~sg 367 (425)
T TIGR01060 346 -TLDAVELAKKAGYTAV--ISHRSG 367 (425)
T ss_pred -HHHHHHHHHHcCCcEE--EecCCc
Confidence 6778999999999742 446664
No 271
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=59.33 E-value=21 Score=39.36 Aligned_cols=67 Identities=21% Similarity=0.224 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHcCCCEEEEe--------cC-----CHHHHHHHHHHHHHhhcCCCCcceeec--cCCCHHHHHHHhhh-c
Q 006566 119 GTVEEVMRIADQGADLVRIT--------VQ-----GKREADACFEIKNSLVQKNYNIPLVAD--IHFAPSVALRVAEC-F 182 (640)
Q Consensus 119 atv~Qi~rl~~aGceiVRvt--------vp-----~~~~A~~l~~I~~~L~~~g~~iPLVAD--IHF~~~~Al~Aa~~-v 182 (640)
.|-++.++|+++|+|.|+|. +. +.-...++.++.+.. .++.+|++|| |++.-.++. |+-. +
T Consensus 159 ~T~e~a~~Li~aGAD~ikVgiGpGSicttR~~~Gvg~pqltAv~~~a~aa--~~~~v~VIaDGGIr~~gDI~K-ALA~GA 235 (343)
T TIGR01305 159 VTGEMVEELILSGADIVKVGIGPGSVCTTRTKTGVGYPQLSAVIECADAA--HGLKGHIISDGGCTCPGDVAK-AFGAGA 235 (343)
T ss_pred cCHHHHHHHHHcCCCEEEEcccCCCcccCceeCCCCcCHHHHHHHHHHHh--ccCCCeEEEcCCcCchhHHHH-HHHcCC
Confidence 46788899999999999987 11 113778888888864 3567999999 777777774 4444 6
Q ss_pred CceeeC
Q 006566 183 DKIRVN 188 (640)
Q Consensus 183 ~KVRIN 188 (640)
+.|=+-
T Consensus 236 d~VMlG 241 (343)
T TIGR01305 236 DFVMLG 241 (343)
T ss_pred CEEEEC
Confidence 666654
No 272
>cd06821 PLPDE_III_D-TA Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme D-Threonine Aldolase. D-threonine aldolase (D-TA, EC 4.3.1.18) reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. Its activity is present in several genera of bacteria but not in fungi. It requires PLP and a divalent cation such as Co2+, Ni2+, Mn2+, or Mg2+ as cofactors for catalytic activity and thermal stability. Members of this subfamily show similarity to bacterial alanine racemase (AR), a fold type III PLP-dependent enzyme which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that
Probab=59.31 E-value=1.6e+02 Score=31.47 Aligned_cols=150 Identities=22% Similarity=0.217 Sum_probs=75.8
Q ss_pred HHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCCCcceeeccCCC-HHHHHHHhhhcCceeeCCCC----CCch
Q 006566 121 VEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFA-PSVALRVAECFDKIRVNPGN----FADR 195 (640)
Q Consensus 121 v~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~-~~~Al~Aa~~v~KVRINPGN----~~d~ 195 (640)
.+=++.+.++||. .++|-+..||+.+.+ .|++-++++ .|+. ++.. ..++.+.+ .|++ ..|.
T Consensus 46 ~~i~~~~~~~G~~--~~~vas~~Ea~~~~~-------~G~~~ill~-~~~~~~~~~-~~~~l~~~---~~~~~~~~~Vds 111 (361)
T cd06821 46 AEIVRLQLEAGIT--KFKCATIAEAEMLAE-------AGAPDVLLA-YPLVGPNIE-RFLELAKK---YPGTRFSALVDD 111 (361)
T ss_pred HHHHHHHHhcCCC--cEEEecHHHHHHHHH-------cCCCeEEEe-CCCCHHHHH-HHHHHHhh---CCCCeEEEEECC
Confidence 4444556688974 899999999987654 366544444 2342 3322 22222222 1211 1121
Q ss_pred hhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEE--eeCCCCCcHhHHHHhCCChHHHHHHHHHHHHHHHHCC
Q 006566 196 RAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRI--GTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLD 273 (640)
Q Consensus 196 ~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRI--GvNhGSLs~ril~ryGdtp~gMVeSAle~~~i~e~~~ 273 (640)
.. .+..+-+.|++.|.+++| =+|.| |+|+|-+|+ +.+.+.++.+.++.
T Consensus 112 ~~---------------------~l~~l~~~a~~~~~~~~V~l~Vd~G------~~R~Gv~~~---~~~~~l~~~i~~~~ 161 (361)
T cd06821 112 LE---------------------AAEALSAAAGSAGLTLSVLLDVNTG------MNRTGIAPG---EDAEELYRAIATLP 161 (361)
T ss_pred HH---------------------HHHHHHHHHHHcCCeEEEEEEeCCC------CCcCCCCCh---HHHHHHHHHHhhCC
Confidence 11 244555666666665443 34566 478997664 23556666665532
Q ss_pred CCcE--EE----EEEeCC-------hhhHHHHHHHHHHHHHHcCCCc-ceEEEee
Q 006566 274 FHNF--LF----SMKASN-------PVVMVQAYRLLVAEMYVHGWDY-PLHLGVT 314 (640)
Q Consensus 274 F~di--vi----SmKsSn-------~~~mV~AyRlL~~~m~~~g~dy-PLHLGVT 314 (640)
.=++ +. +.-.++ ....++.++.+++++.+.|... .+|+|=|
T Consensus 162 ~l~l~Gl~~~~gh~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~v~~GgS 216 (361)
T cd06821 162 GLVLAGLHAYDGHHRNTDLAEREAAADAAYKPVLALREALEAAGLPVPELVAGGT 216 (361)
T ss_pred CceEeeEEeecCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCC
Confidence 1111 11 111122 1123344555677777777653 3577644
No 273
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=59.26 E-value=1.3e+02 Score=29.78 Aligned_cols=127 Identities=16% Similarity=0.143 Sum_probs=71.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecCCHHH--HHHHHHHHHHhhcCCCCcceeeccCCC-----HHHH-HHHhhh-cC
Q 006566 113 DTKDVAGTVEEVMRIADQGADLVRITVQGKRE--ADACFEIKNSLVQKNYNIPLVADIHFA-----PSVA-LRVAEC-FD 183 (640)
Q Consensus 113 ~T~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~--A~~l~~I~~~L~~~g~~iPLVADIHF~-----~~~A-l~Aa~~-v~ 183 (640)
|..|.+..++=+.++.+.- ++|-+-+|=... .+-++.||+ . .++++|+|+- +... ..+++. +|
T Consensus 11 D~~~~~~~~~~~~~~~~~~-~~vk~g~~l~~~~G~~~v~~ir~----~---~~i~~D~k~~di~~~~~~~~~~~~~~gad 82 (215)
T PRK13813 11 DVTDRERALKIAEELDDYV-DAIKVGWPLVLASGLGIIEELKR----Y---APVIADLKVADIPNTNRLICEAVFEAGAW 82 (215)
T ss_pred CCCCHHHHHHHHHhccccC-CEEEEcHHHHHhhCHHHHHHHHh----c---CCEEEEeeccccHHHHHHHHHHHHhCCCC
Confidence 6667776666555554433 355555443221 233444444 2 2788899984 3333 455565 67
Q ss_pred ceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCCChHHHHHHHH
Q 006566 184 KIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAF 263 (640)
Q Consensus 184 KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGdtp~gMVeSAl 263 (640)
-|=+.+- .+. . .+.++++.|+++|...=+-+|..+.+. +.. +.+-..
T Consensus 83 ~vtvh~e-~g~-~----------------------~l~~~i~~~~~~g~~~~v~~~~~~~~~--~~~-------~~~~~~ 129 (215)
T PRK13813 83 GIIVHGF-TGR-D----------------------SLKAVVEAAAESGGKVFVVVEMSHPGA--LEF-------IQPHAD 129 (215)
T ss_pred EEEEcCc-CCH-H----------------------HHHHHHHHHHhcCCeEEEEEeCCCCCC--CCC-------HHHHHH
Confidence 6666663 221 1 277899999999986633334432111 111 123455
Q ss_pred HHHHHHHHCCCCcEEEE
Q 006566 264 EFARICRKLDFHNFLFS 280 (640)
Q Consensus 264 e~~~i~e~~~F~diviS 280 (640)
..++++.+.||.-.+++
T Consensus 130 ~v~~m~~e~G~~g~~~~ 146 (215)
T PRK13813 130 KLAKLAQEAGAFGVVAP 146 (215)
T ss_pred HHHHHHHHhCCCeEEEC
Confidence 66889999999877644
No 274
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=59.05 E-value=80 Score=33.59 Aligned_cols=58 Identities=9% Similarity=0.068 Sum_probs=44.7
Q ss_pred CCCcceeeccCCC-HHHHHHHhhh--cCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEE
Q 006566 159 NYNIPLVADIHFA-PSVALRVAEC--FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVR 235 (640)
Q Consensus 159 g~~iPLVADIHF~-~~~Al~Aa~~--v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIR 235 (640)
.+++|+.+|=.+. +.-+..+++. ++-|.|-|...|.-.+ +..+++.|..+|+++=
T Consensus 204 ~~~~Pia~dEs~~~~~d~~~~~~~~~~d~i~ik~~~~GGi~~----------------------~~~i~~~a~~~gi~~~ 261 (307)
T TIGR01927 204 ATGTAIALDESLWELPQLADEYGPGWRGALVIKPAIIGSPAK----------------------LRDLAQKAHRLGLQAV 261 (307)
T ss_pred hCCCCEEeCCCcCChHHHHHHHhcCCCceEEECchhcCCHHH----------------------HHHHHHHHHHcCCCEE
Confidence 3789999997643 4444444443 7889999999988543 7889999999999998
Q ss_pred Eee
Q 006566 236 IGT 238 (640)
Q Consensus 236 IGv 238 (640)
+|-
T Consensus 262 ~~~ 264 (307)
T TIGR01927 262 FSS 264 (307)
T ss_pred EEC
Confidence 873
No 275
>PRK07328 histidinol-phosphatase; Provisional
Probab=58.94 E-value=22 Score=36.76 Aligned_cols=78 Identities=17% Similarity=0.279 Sum_probs=53.3
Q ss_pred HhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEEeCChhhHHHHHHHH
Q 006566 217 EEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLL 296 (640)
Q Consensus 217 ~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGdtp~gMVeSAle~~~i~e~~~F~diviSmKsSn~~~mV~AyRlL 296 (640)
.+.+.++++.|+++|++|=| |.++|-+..-.. -| ..+++++|.+.|-. |+|+-=|-++...-..+...
T Consensus 176 ~~~~~~il~~~~~~g~~lEi--Nt~~~r~~~~~~---yp------~~~il~~~~~~g~~-itigSDAH~~~~vg~~~~~a 243 (269)
T PRK07328 176 TELYEEALDVIAAAGLALEV--NTAGLRKPVGEI---YP------SPALLRACRERGIP-VVLGSDAHRPEEVGFGFAEA 243 (269)
T ss_pred HHHHHHHHHHHHHcCCEEEE--EchhhcCCCCCC---CC------CHHHHHHHHHcCCC-EEEeCCCCCHHHHhccHHHH
Confidence 35578899999999999955 666664321111 23 34789999999985 88887777766544355555
Q ss_pred HHHHHHcCCC
Q 006566 297 VAEMYVHGWD 306 (640)
Q Consensus 297 ~~~m~~~g~d 306 (640)
.+.+.+.|+.
T Consensus 244 ~~~l~~~G~~ 253 (269)
T PRK07328 244 LALLKEVGYT 253 (269)
T ss_pred HHHHHHcCCc
Confidence 6666667765
No 276
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=58.64 E-value=35 Score=37.75 Aligned_cols=68 Identities=22% Similarity=0.244 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHcCCCEEEEec--------CCHHHHHHHHHHHHHhhcCCCCcceee-ccCCCHHHHHHHhhh-cCceee
Q 006566 118 AGTVEEVMRIADQGADLVRITV--------QGKREADACFEIKNSLVQKNYNIPLVA-DIHFAPSVALRVAEC-FDKIRV 187 (640)
Q Consensus 118 ~atv~Qi~rl~~aGceiVRvtv--------p~~~~A~~l~~I~~~L~~~g~~iPLVA-DIHF~~~~Al~Aa~~-v~KVRI 187 (640)
..+.+.++.++++|+++|=+-- -+..+-.++.++++. .++|+|+ | .++++.|+.+++. +|-|-+
T Consensus 142 ~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~-----~~IPVI~G~-V~t~e~A~~~~~aGaDgV~~ 215 (369)
T TIGR01304 142 QNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGE-----LDVPVIAGG-VNDYTTALHLMRTGAAGVIV 215 (369)
T ss_pred cCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHH-----CCCCEEEeC-CCCHHHHHHHHHcCCCEEEE
Confidence 3567788889999999987631 112235566676664 5799998 7 6999999999998 999886
Q ss_pred CCCC
Q 006566 188 NPGN 191 (640)
Q Consensus 188 NPGN 191 (640)
-+|-
T Consensus 216 G~gg 219 (369)
T TIGR01304 216 GPGG 219 (369)
T ss_pred CCCC
Confidence 5544
No 277
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=58.64 E-value=98 Score=34.48 Aligned_cols=100 Identities=15% Similarity=0.130 Sum_probs=73.1
Q ss_pred CCHHHHHHHHHHHHH-cCCCEEEEecCCH-HHHHHHHHHHHHhhcCCCCcceeeccCC--CHHHHHHHhhh--cCceeeC
Q 006566 115 KDVAGTVEEVMRIAD-QGADLVRITVQGK-READACFEIKNSLVQKNYNIPLVADIHF--APSVALRVAEC--FDKIRVN 188 (640)
Q Consensus 115 ~Dv~atv~Qi~rl~~-aGceiVRvtvp~~-~~A~~l~~I~~~L~~~g~~iPLVADIHF--~~~~Al~Aa~~--v~KVRIN 188 (640)
.+.+..++-..+|.+ .+ |+=|-=|=. .+-+.+.++++++ |.++||++|=.| +|+-...+++. ++-|.|-
T Consensus 261 ~t~~eai~~~~~l~e~~~--i~~iEdPl~~~D~eg~~~L~~~~---g~~ipi~gdE~~~~~~~~~~~~i~~~a~d~v~ik 335 (408)
T cd03313 261 LTSEELIDYYKELVKKYP--IVSIEDPFDEDDWEGWAKLTAKL---GDKIQIVGDDLFVTNPERLKKGIEKKAANALLIK 335 (408)
T ss_pred cCHHHHHHHHHHHHHhCC--cEEEEeCCCCcCHHHHHHHHHhc---CCCCeEEcCCcccCCHHHHHHHHHhCCCCEEEEc
Confidence 455666666666654 45 555554433 4678899998863 458999999754 78888888775 9999999
Q ss_pred CCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCC
Q 006566 189 PGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSL 243 (640)
Q Consensus 189 PGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSL 243 (640)
|..+|.-.. ..++++.|+.+|+++=+| |.|.
T Consensus 336 ~~~iGGite----------------------~~~ia~lA~~~G~~~~~s--h~sg 366 (408)
T cd03313 336 VNQIGTLTE----------------------TIEAIKLAKKNGYGVVVS--HRSG 366 (408)
T ss_pred ccccCCHHH----------------------HHHHHHHHHHcCCeEEcc--CCCc
Confidence 999997442 678899999999987444 4444
No 278
>PRK12928 lipoyl synthase; Provisional
Probab=58.53 E-value=1.9e+02 Score=30.91 Aligned_cols=129 Identities=16% Similarity=0.166 Sum_probs=72.3
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCCH-----HHHHHHHHHHHHhhcCC--CCcceeeccCCC---HHHHHHHhhh-c
Q 006566 114 TKDVAGTVEEVMRIADQGADLVRITVQGK-----READACFEIKNSLVQKN--YNIPLVADIHFA---PSVALRVAEC-F 182 (640)
Q Consensus 114 T~Dv~atv~Qi~rl~~aGceiVRvtvp~~-----~~A~~l~~I~~~L~~~g--~~iPLVADIHF~---~~~Al~Aa~~-v 182 (640)
..|.+.-+++++++.+.|...|-||-.+. ..++.+.++-+.+++.. +.+-++ +-+|. ........++ +
T Consensus 86 ~~~~eei~~~a~~~~~~G~keivitg~~~dDl~d~g~~~~~ell~~Ik~~~p~~~I~~l-tp~~~~~~~e~L~~l~~Ag~ 164 (290)
T PRK12928 86 PLDPDEPERVAEAVAALGLRYVVLTSVARDDLPDGGAAHFVATIAAIRARNPGTGIEVL-TPDFWGGQRERLATVLAAKP 164 (290)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEEEeCCcccccCHHHHHHHHHHHHhcCCCCEEEEe-ccccccCCHHHHHHHHHcCc
Confidence 47888889999999999998888875432 12334444444444432 222221 22332 1111111111 1
Q ss_pred ----------Ccee--eCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcC--CeEEEeeCCCCCcHhHH
Q 006566 183 ----------DKIR--VNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYG--RAVRIGTNHGSLSDRIM 248 (640)
Q Consensus 183 ----------~KVR--INPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g--~aIRIGvNhGSLs~ril 248 (640)
+.|+ |||| + + .+....+++.||+.| +.+.-|.=-|
T Consensus 165 ~i~~hnlEt~~~vl~~m~r~-~-t----------------------~e~~le~l~~ak~~gp~i~~~s~iIvG------- 213 (290)
T PRK12928 165 DVFNHNLETVPRLQKAVRRG-A-D----------------------YQRSLDLLARAKELAPDIPTKSGLMLG------- 213 (290)
T ss_pred hhhcccCcCcHHHHHHhCCC-C-C----------------------HHHHHHHHHHHHHhCCCceecccEEEe-------
Confidence 2222 4444 1 1 234678899999988 6665444222
Q ss_pred HHhCCChHHHHHHHHHHHHHHHHCCCCcEEEE
Q 006566 249 SYYGDSPRGMVESAFEFARICRKLDFHNFLFS 280 (640)
Q Consensus 249 ~ryGdtp~gMVeSAle~~~i~e~~~F~diviS 280 (640)
+|.|.+ .-.+.++.+++++++.+-+.
T Consensus 214 --~GET~e----d~~etl~~Lrel~~d~v~i~ 239 (290)
T PRK12928 214 --LGETED----EVIETLRDLRAVGCDRLTIG 239 (290)
T ss_pred --CCCCHH----HHHHHHHHHHhcCCCEEEEE
Confidence 256764 44567888999999877763
No 279
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=58.31 E-value=3.3e+02 Score=31.03 Aligned_cols=71 Identities=14% Similarity=0.279 Sum_probs=39.3
Q ss_pred HHHHHHHcCCeEEEeeCCCCCcHhHHHHhCCChHHHHHHHHHHHHHHHHCCCC---cEEEEEEeCChhhHHHHHHHH
Q 006566 223 LVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFH---NFLFSMKASNPVVMVQAYRLL 296 (640)
Q Consensus 223 lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGdtp~gMVeSAle~~~i~e~~~F~---diviSmKsSn~~~mV~AyRlL 296 (640)
+++..++.|+ .||-+--=|.++++++.++-.. -++...+-++.|++.|+. ++++-+=.-+...+.+.++.+
T Consensus 289 ll~~l~~aG~-~~v~iGiES~~~~~L~~~~K~~--t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et~e~~~~t~~~~ 362 (497)
T TIGR02026 289 ILHLYRRAGL-VHISLGTEAAAQATLDHFRKGT--TTSTNKEAIRLLRQHNILSEAQFITGFENETDETFEETYRQL 362 (497)
T ss_pred HHHHHHHhCC-cEEEEccccCCHHHHHHhcCCC--CHHHHHHHHHHHHHCCCcEEEEEEEECCCCCHHHHHHHHHHH
Confidence 4555666665 2433333455577777776210 134556667777777773 556666665555444444443
No 280
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=58.24 E-value=89 Score=31.94 Aligned_cols=114 Identities=9% Similarity=0.035 Sum_probs=83.9
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhhcCceeeCCCCCCc
Q 006566 115 KDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFAD 194 (640)
Q Consensus 115 ~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~v~KVRINPGN~~d 194 (640)
.|.+..+..++.|.+.|...+=||-.+....++++.|+++...+ -++-+=|=-=.++.-|..|+++=...=+-||--
T Consensus 22 ~~~~~a~~~~~al~~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~-p~~~vGaGTV~~~~~~~~a~~aGA~FivsP~~~-- 98 (213)
T PRK06552 22 ESKEEALKISLAVIKGGIKAIEVTYTNPFASEVIKELVELYKDD-PEVLIGAGTVLDAVTARLAILAGAQFIVSPSFN-- 98 (213)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCccHHHHHHHHHHHcCCC-CCeEEeeeeCCCHHHHHHHHHcCCCEEECCCCC--
Confidence 48899999999999999999999999999999999999862110 135555666788999999988833344567421
Q ss_pred hhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCCChHHHHHHHHHHHHHHHHCCC
Q 006566 195 RRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDF 274 (640)
Q Consensus 195 ~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGdtp~gMVeSAle~~~i~e~~~F 274 (640)
.++++.|+++|++.==|+ .||..+ .-+.+.|+
T Consensus 99 --------------------------~~v~~~~~~~~i~~iPG~--------------~T~~E~--------~~A~~~Ga 130 (213)
T PRK06552 99 --------------------------RETAKICNLYQIPYLPGC--------------MTVTEI--------VTALEAGS 130 (213)
T ss_pred --------------------------HHHHHHHHHcCCCEECCc--------------CCHHHH--------HHHHHcCC
Confidence 358999999999984444 355332 22345888
Q ss_pred CcEEE
Q 006566 275 HNFLF 279 (640)
Q Consensus 275 ~divi 279 (640)
+-+.|
T Consensus 131 d~vkl 135 (213)
T PRK06552 131 EIVKL 135 (213)
T ss_pred CEEEE
Confidence 87777
No 281
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=57.90 E-value=59 Score=37.40 Aligned_cols=69 Identities=19% Similarity=0.187 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHcCCCEEEEe-cCCH--HHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhh-cCcee--eCCC
Q 006566 119 GTVEEVMRIADQGADLVRIT-VQGK--READACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIR--VNPG 190 (640)
Q Consensus 119 atv~Qi~rl~~aGceiVRvt-vp~~--~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~-v~KVR--INPG 190 (640)
.+.+.+..|.++|+|+|=|+ +++- .-.+.++.||+.+ +-+++++|=-=-++.-|..++++ +|-|+ |-||
T Consensus 242 ~~~~ra~~Lv~aGvd~i~vd~a~g~~~~~~~~i~~ir~~~---~~~~~V~aGnV~t~e~a~~li~aGAd~I~vg~g~G 316 (502)
T PRK07107 242 DYAERVPALVEAGADVLCIDSSEGYSEWQKRTLDWIREKY---GDSVKVGAGNVVDREGFRYLAEAGADFVKVGIGGG 316 (502)
T ss_pred hHHHHHHHHHHhCCCeEeecCcccccHHHHHHHHHHHHhC---CCCceEEeccccCHHHHHHHHHcCCCEEEECCCCC
Confidence 46789999999999999885 3332 2366777777752 12388888777789999999998 88877 5677
No 282
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=57.74 E-value=27 Score=34.80 Aligned_cols=70 Identities=6% Similarity=0.091 Sum_probs=45.9
Q ss_pred CceEEEec--cCC--CCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCCCcceeeccCCCHHHH
Q 006566 102 HPIRVQTM--TTN--DTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVA 175 (640)
Q Consensus 102 ~PI~VQSM--t~t--~T~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~A 175 (640)
.|+.+-.. +.| .|..+.+-.+...++.+.||+++-|++.+..+.++..+-.+.+ .+++.||++|- +..+|
T Consensus 32 k~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~--~~l~fpllsD~--~~~ia 105 (187)
T PRK10382 32 RWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETI--AKIKYAMIGDP--TGALT 105 (187)
T ss_pred CeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccc--cCCceeEEEcC--chHHH
Confidence 36666654 333 3344444455556677889999999999988877765543322 36889999993 45554
No 283
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=57.73 E-value=34 Score=37.33 Aligned_cols=64 Identities=16% Similarity=0.170 Sum_probs=44.4
Q ss_pred HHHHHHHHHHcCCCEEEEe-------cCCHH--------HHHHHHHHHHHhhcCCCCcceeeccCCC-HHHHHHHhhh-c
Q 006566 120 TVEEVMRIADQGADLVRIT-------VQGKR--------EADACFEIKNSLVQKNYNIPLVADIHFA-PSVALRVAEC-F 182 (640)
Q Consensus 120 tv~Qi~rl~~aGceiVRvt-------vp~~~--------~A~~l~~I~~~L~~~g~~iPLVADIHF~-~~~Al~Aa~~-v 182 (640)
|.+.+++|+++|||++++. +...+ ...++.++++. .++|+|||--.. |.-+.+|+.. +
T Consensus 150 t~e~a~~l~~aGad~i~vg~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~~-----~~ipVIAdGGI~~~~Di~KaLa~GA 224 (326)
T PRK05458 150 TPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKA-----ARKPIIADGGIRTHGDIAKSIRFGA 224 (326)
T ss_pred CHHHHHHHHHcCcCEEEECCCCCcccccccccCCCCCccHHHHHHHHHHH-----cCCCEEEeCCCCCHHHHHHHHHhCC
Confidence 7888999999999999865 11111 45567777775 469999995543 4444477776 7
Q ss_pred CceeeC
Q 006566 183 DKIRVN 188 (640)
Q Consensus 183 ~KVRIN 188 (640)
+.|-+-
T Consensus 225 ~aV~vG 230 (326)
T PRK05458 225 TMVMIG 230 (326)
T ss_pred CEEEec
Confidence 777763
No 284
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=57.71 E-value=1.8e+02 Score=28.64 Aligned_cols=152 Identities=16% Similarity=0.112 Sum_probs=86.5
Q ss_pred cCCCCcceeeccCCC-HH----HHHHHhhh-cCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHH-
Q 006566 157 QKNYNIPLVADIHFA-PS----VALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKK- 229 (640)
Q Consensus 157 ~~g~~iPLVADIHF~-~~----~Al~Aa~~-v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke- 229 (640)
....+.|+++=|+-+ |. +|..+.++ ++.|=||=|.= ... -++.+|=.-++.=-+.+.++++..++
T Consensus 50 ~~~~~~p~~~qi~g~~~~~~~~aa~~~~~aG~d~ieln~g~p---~~~-----~~~~~~G~~l~~~~~~~~eii~~v~~~ 121 (231)
T cd02801 50 RNPEERPLIVQLGGSDPETLAEAAKIVEELGADGIDLNMGCP---SPK-----VTKGGAGAALLKDPELVAEIVRAVREA 121 (231)
T ss_pred cCccCCCEEEEEcCCCHHHHHHHHHHHHhcCCCEEEEeCCCC---HHH-----HhCCCeeehhcCCHHHHHHHHHHHHHh
Confidence 345679999999754 65 66666665 88899986641 110 01122322222222223344444443
Q ss_pred cCCeEEEeeCCCCCcHhHHHHhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEEeCC----hhhHHHHHHHHHHHHHHcCC
Q 006566 230 YGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASN----PVVMVQAYRLLVAEMYVHGW 305 (640)
Q Consensus 230 ~g~aIRIGvNhGSLs~ril~ryGdtp~gMVeSAle~~~i~e~~~F~diviSmKsSn----~~~mV~AyRlL~~~m~~~g~ 305 (640)
-+.++++.+|.|.- +. +.+.++++.+++.|.+-+.++-.... .....+..+.+.+. .
T Consensus 122 ~~~~v~vk~r~~~~-----------~~---~~~~~~~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~-----~ 182 (231)
T cd02801 122 VPIPVTVKIRLGWD-----------DE---EETLELAKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKEA-----V 182 (231)
T ss_pred cCCCEEEEEeeccC-----------Cc---hHHHHHHHHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhC-----C
Confidence 23788888875531 11 67889999999999987776543211 01122333333332 5
Q ss_pred CcceEEEeecCCCCCcceeehHHHHHHHhhhcCCcEEEe
Q 006566 306 DYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRV 344 (640)
Q Consensus 306 dyPLHLGVTEAG~gedGrIKSAiGIG~LL~DGIGDTIRV 344 (640)
+.|+-. +|-|.|.-.+-.+|..|-=|.+-+
T Consensus 183 ~ipvi~---------~Ggi~~~~d~~~~l~~~gad~V~i 212 (231)
T cd02801 183 SIPVIA---------NGDIFSLEDALRCLEQTGVDGVMI 212 (231)
T ss_pred CCeEEE---------eCCCCCHHHHHHHHHhcCCCEEEE
Confidence 566644 466777777777777754476655
No 285
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=57.55 E-value=2.4e+02 Score=29.27 Aligned_cols=120 Identities=14% Similarity=0.127 Sum_probs=71.6
Q ss_pred HHHHHHHHHHcCCCEEEEecCCHH----------HHHHHHHHHHHhhcCCCC-cceeeccCCCHHHHHHHhhhcCceeeC
Q 006566 120 TVEEVMRIADQGADLVRITVQGKR----------EADACFEIKNSLVQKNYN-IPLVADIHFAPSVALRVAECFDKIRVN 188 (640)
Q Consensus 120 tv~Qi~rl~~aGceiVRvtvp~~~----------~A~~l~~I~~~L~~~g~~-iPLVADIHF~~~~Al~Aa~~v~KVRIN 188 (640)
-.+.++++.+.||+-+=|-+.+.+ +++.+++..+ +.+.. .|++ +|= | +. ||
T Consensus 13 ~~~a~~~~~~~G~~~~qif~~~P~~w~~~~~~~~~~~~~~~~~~---~~~~~~~~i~--~Ha-p--------y~----iN 74 (274)
T TIGR00587 13 LQAAYNRAAEIGATAFMFFLKSPRWWRRPMLEEEVIDWFKAALE---TNKNLSQIVL--VHA-P--------YL----IN 74 (274)
T ss_pred HHHHHHHHHHhCCCEEEEEecCccccCCCCCCHHHHHHHHHHHH---HcCCCCccee--ccC-C--------ee----ee
Confidence 345678888999999999876665 4555555444 33332 1111 221 1 11 88
Q ss_pred CCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCCChHHHHHHHHHHHHH
Q 006566 189 PGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARI 268 (640)
Q Consensus 189 PGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGdtp~gMVeSAle~~~i 268 (640)
+++-.... .++-.+.|+.-++.|++.|.. .+.+..|+..+. ..+...+.+.+.++-
T Consensus 75 las~~~~~----------------r~~sv~~~~~~i~~A~~lga~-~vv~H~G~~~~~-------~~e~~~~~~~~~l~~ 130 (274)
T TIGR00587 75 LASPDEEK----------------EEKSLDVLDEELKRCELLGIM-LYNFHPGSALKC-------SEEEGLDNLIESLNV 130 (274)
T ss_pred cCCCCHHH----------------HHHHHHHHHHHHHHHHHcCCC-EEEECCCCCCCC-------CHHHHHHHHHHHHHH
Confidence 88753322 234456688899999999988 789999997532 233445555555544
Q ss_pred HHHCCCCcEEEEEE
Q 006566 269 CRKLDFHNFLFSMK 282 (640)
Q Consensus 269 ~e~~~F~diviSmK 282 (640)
+.+... ++.|.+-
T Consensus 131 l~~~~~-~v~l~lE 143 (274)
T TIGR00587 131 VIKETK-IVTILLE 143 (274)
T ss_pred HHhccC-CCEEEEE
Confidence 333222 3666665
No 286
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=57.33 E-value=2e+02 Score=28.25 Aligned_cols=136 Identities=13% Similarity=0.059 Sum_probs=73.7
Q ss_pred HHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHh----hh-cCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhh
Q 006566 145 ADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVA----EC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEV 219 (640)
Q Consensus 145 A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa----~~-v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~ 219 (640)
.+-+..|.+.+.+.||.+ ++.+-+.++.--...+ .. +|.|=|-|.+..+.. .
T Consensus 15 ~~~~~gi~~~~~~~g~~~-~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~----------------------~ 71 (273)
T cd06292 15 PAFAEAIEAALAQYGYTV-LLCNTYRGGVSEADYVEDLLARGVRGVVFISSLHADTH----------------------A 71 (273)
T ss_pred HHHHHHHHHHHHHCCCEE-EEEeCCCChHHHHHHHHHHHHcCCCEEEEeCCCCCccc----------------------c
Confidence 445566666666777775 4445555553322222 22 777777776654422 1
Q ss_pred HHHHHHHHHHcCCeEEEeeCCCCCc-HhHHHHhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEEeCChhhHHHHHHHHHH
Q 006566 220 FSPLVEKCKKYGRAVRIGTNHGSLS-DRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVA 298 (640)
Q Consensus 220 f~~lV~~~Ke~g~aIRIGvNhGSLs-~ril~ryGdtp~gMVeSAle~~~i~e~~~F~diviSmKsSn~~~mV~AyRlL~~ 298 (640)
..+.++.++++|+|+ |=+|.-.-. .. ....+.....+...|.+++- +.|+.+|.+-.-.++.....+-++-+.+
T Consensus 72 ~~~~i~~~~~~~ipv-V~i~~~~~~~~~-~~~V~~d~~~~~~~~~~~l~---~~g~~~i~~i~~~~~~~~~~~R~~gf~~ 146 (273)
T cd06292 72 DHSHYERLAERGLPV-VLVNGRAPPPLK-VPHVSTDDALAMRLAVRHLV---ALGHRRIGFASGPGRTVPRRRKIAGFRA 146 (273)
T ss_pred hhHHHHHHHhCCCCE-EEEcCCCCCCCC-CCEEEECcHHHHHHHHHHHH---HCCCceEEEEeCCcccccHHHHHHHHHH
Confidence 445667788888886 222221101 11 12223234566666766664 4699999875422221223334555667
Q ss_pred HHHHcCCCcc
Q 006566 299 EMYVHGWDYP 308 (640)
Q Consensus 299 ~m~~~g~dyP 308 (640)
.|.+.|+.+|
T Consensus 147 ~~~~~~~~~~ 156 (273)
T cd06292 147 ALEEAGLEPP 156 (273)
T ss_pred HHHHcCCCCC
Confidence 7777787654
No 287
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=57.29 E-value=1.1e+02 Score=38.82 Aligned_cols=125 Identities=22% Similarity=0.278 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHcCCCEEEE-ecCCHHHHHHH-HHHHHHhhcCCCCcceeeccC-CC----------HHHHHHHhhh--
Q 006566 117 VAGTVEEVMRIADQGADLVRI-TVQGKREADAC-FEIKNSLVQKNYNIPLVADIH-FA----------PSVALRVAEC-- 181 (640)
Q Consensus 117 v~atv~Qi~rl~~aGceiVRv-tvp~~~~A~~l-~~I~~~L~~~g~~iPLVADIH-F~----------~~~Al~Aa~~-- 181 (640)
.+.=-+|+..|.++|+|++-+ |.|+..+|++. ..+++.+.+++.++|++.=.- |+ +..+..+++.
T Consensus 147 ~~~y~eq~~~L~~~GvD~iliETi~d~~EakAal~a~~~~~~~~~~~lPv~vS~~~~d~~Gr~~~G~~~~~~~~~l~~~~ 226 (1178)
T TIGR02082 147 VDAYTEQAKGLLDGGVDLLLIETCFDTLNAKAALFAAETVFEEKGRELPIMISGTIVDTSGRTLSGQTIEAFLTSLEHAG 226 (1178)
T ss_pred HHHHHHHHHHHHhCCCCEEEEeccCCHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEECCCCeeCCCCcHHHHHHHHhcCC
Confidence 456678999999999999999 79999999854 445555566788899887621 22 3344444443
Q ss_pred cCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHc-CCeEEEeeCCCCCcHhHHHHhCCChHHHHH
Q 006566 182 FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKY-GRAVRIGTNHGSLSDRIMSYYGDSPRGMVE 260 (640)
Q Consensus 182 v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~-g~aIRIGvNhGSLs~ril~ryGdtp~gMVe 260 (640)
++.|=||=+- +.+ .+.++|+...++ .+++=+=-|.| |+.. ...|-.+|+.|.+
T Consensus 227 ~~avGlNCs~--gP~----------------------~m~~~l~~l~~~~~~pi~vyPNAG-lP~~-~~~yd~~p~~~a~ 280 (1178)
T TIGR02082 227 IDMIGLNCAL--GPD----------------------EMRPHLKHLSEHAEAYVSCHPNAG-LPNA-FGEYDLTPDELAK 280 (1178)
T ss_pred CCEEEeCCCC--CHH----------------------HHHHHHHHHHHhcCceEEEEeCCC-CCCC-CCcccCCHHHHHH
Confidence 5555565431 111 145555555444 34553334988 4332 3467679999999
Q ss_pred HHHHHHH
Q 006566 261 SAFEFAR 267 (640)
Q Consensus 261 SAle~~~ 267 (640)
.+.+|++
T Consensus 281 ~~~~~~~ 287 (1178)
T TIGR02082 281 ALADFAA 287 (1178)
T ss_pred HHHHHHH
Confidence 8888765
No 288
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=57.29 E-value=1.7e+02 Score=29.50 Aligned_cols=172 Identities=18% Similarity=0.221 Sum_probs=91.1
Q ss_pred HHHHHHHHHHcCCCEEEEecCCH------HHHHHHHHHHHHhhcCCCCcceeeccCC-CHHHHHHHhhh-cCceeeCCCC
Q 006566 120 TVEEVMRIADQGADLVRITVQGK------READACFEIKNSLVQKNYNIPLVADIHF-APSVALRVAEC-FDKIRVNPGN 191 (640)
Q Consensus 120 tv~Qi~rl~~aGceiVRvtvp~~------~~A~~l~~I~~~L~~~g~~iPLVADIHF-~~~~Al~Aa~~-v~KVRINPGN 191 (640)
-+++++++.+.|++.+=+.--+. +.++.+++|.+ .+++|++.+-=. ++.-+..+++. +++|=|+=..
T Consensus 34 ~~e~a~~~~~~G~~~l~i~dl~~~~~~~~~~~~~i~~i~~-----~~~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~ 108 (241)
T PRK13585 34 PVEVAKRWVDAGAETLHLVDLDGAFEGERKNAEAIEKIIE-----AVGVPVQLGGGIRSAEDAASLLDLGVDRVILGTAA 108 (241)
T ss_pred HHHHHHHHHHcCCCEEEEEechhhhcCCcccHHHHHHHHH-----HcCCcEEEcCCcCCHHHHHHHHHcCCCEEEEChHH
Confidence 45677778899999886664442 33456666666 388999985333 46666677777 8888553222
Q ss_pred CCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCCChHHHHHHHHHHHHHHHH
Q 006566 192 FADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRK 271 (640)
Q Consensus 192 ~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGdtp~gMVeSAle~~~i~e~ 271 (640)
+.+. +.+.++++.+....+.+-|-+..|-+- - .|..... -.+.+++++.+++
T Consensus 109 ~~~~----------------------~~~~~i~~~~g~~~i~~sid~~~~~v~----~-~g~~~~~-~~~~~~~~~~~~~ 160 (241)
T PRK13585 109 VENP----------------------EIVRELSEEFGSERVMVSLDAKDGEVV----I-KGWTEKT-GYTPVEAAKRFEE 160 (241)
T ss_pred hhCh----------------------HHHHHHHHHhCCCcEEEEEEeeCCEEE----E-CCCcccC-CCCHHHHHHHHHH
Confidence 2211 124444444322223333333333111 1 1311100 1245778888899
Q ss_pred CCCCcEEE-EEEeC--ChhhHHHHHHHHHHHHHHcCCCcceEEEeecCCCCCcceeehHHHHHHHhhhcC
Q 006566 272 LDFHNFLF-SMKAS--NPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGL 338 (640)
Q Consensus 272 ~~F~divi-SmKsS--n~~~mV~AyRlL~~~m~~~g~dyPLHLGVTEAG~gedGrIKSAiGIG~LL~DGI 338 (640)
.|+.-+.+ +++.. ....-.+..+.+++. .+.|+-.+ |=|.|.-.+-.++.-|.
T Consensus 161 ~G~~~i~~~~~~~~g~~~g~~~~~i~~i~~~-----~~iPvia~---------GGI~~~~di~~~~~~Ga 216 (241)
T PRK13585 161 LGAGSILFTNVDVEGLLEGVNTEPVKELVDS-----VDIPVIAS---------GGVTTLDDLRALKEAGA 216 (241)
T ss_pred cCCCEEEEEeecCCCCcCCCCHHHHHHHHHh-----CCCCEEEe---------CCCCCHHHHHHHHHcCC
Confidence 99988876 34432 111224455666665 56776442 44444444444444333
No 289
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=56.74 E-value=93 Score=33.38 Aligned_cols=97 Identities=12% Similarity=0.102 Sum_probs=63.3
Q ss_pred hHHHHHHHHHHcCC--eEEEeeC----CCC-CcHhHHH---HhCC---------ChHHHHHHHHHHHHHHHHCCCCcEE-
Q 006566 219 VFSPLVEKCKKYGR--AVRIGTN----HGS-LSDRIMS---YYGD---------SPRGMVESAFEFARICRKLDFHNFL- 278 (640)
Q Consensus 219 ~f~~lV~~~Ke~g~--aIRIGvN----hGS-Ls~ril~---ryGd---------tp~gMVeSAle~~~i~e~~~F~div- 278 (640)
++.++++..++.+- -||||++ .++ +++++++ ++|. .|.++.+.+++-++.|.+.|+.-.+
T Consensus 154 ~L~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~g~~v~i~l~~~h~~el~~~~~~ai~~L~~~Gi~v~~q 233 (321)
T TIGR03822 154 RLGDIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKTSGKTVYVALHANHARELTAEARAACARLIDAGIPMVSQ 233 (321)
T ss_pred HHHHHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHcCCcEEEEecCCChhhcCHHHHHHHHHHHHcCCEEEEE
Confidence 46777888887652 4799984 333 4555544 4442 2677888999999999999984323
Q ss_pred -EEEEeCChhhHHHHHHHHHHHHHHcCCC-cceEEEeecCC
Q 006566 279 -FSMKASNPVVMVQAYRLLVAEMYVHGWD-YPLHLGVTEAG 317 (640)
Q Consensus 279 -iSmKsSn~~~mV~AyRlL~~~m~~~g~d-yPLHLGVTEAG 317 (640)
+-+|.-| ...+..+.|++.+.+.|.. |=||.-..-.|
T Consensus 234 ~vLl~gvN--d~~~~l~~l~~~l~~~gv~pyyl~~~~p~~g 272 (321)
T TIGR03822 234 SVLLRGVN--DDPETLAALMRAFVECRIKPYYLHHLDLAPG 272 (321)
T ss_pred eeEeCCCC--CCHHHHHHHHHHHHhcCCeeEEEEecCCCCC
Confidence 3345433 4466677777777777886 77887554333
No 290
>PLN02489 homocysteine S-methyltransferase
Probab=56.66 E-value=62 Score=35.14 Aligned_cols=46 Identities=28% Similarity=0.438 Sum_probs=34.4
Q ss_pred HHHHHHHHHHcCCCEEEE-ecCCHHHHHHHHHHHHHhhcCCCCcceeecc
Q 006566 120 TVEEVMRIADQGADLVRI-TVQGKREADACFEIKNSLVQKNYNIPLVADI 168 (640)
Q Consensus 120 tv~Qi~rl~~aGceiVRv-tvp~~~~A~~l~~I~~~L~~~g~~iPLVADI 168 (640)
--+|+..|.++|+|++=+ |.|+.+|++++-+.-+ +.+.++|++.=.
T Consensus 169 ~~~qi~~l~~~gvD~i~~ET~~~l~E~~a~~~~~~---~~~~~~p~~iS~ 215 (335)
T PLN02489 169 HRRRLQVLAEAGPDLIAFETIPNKLEAQAYVELLE---EENIKIPAWISF 215 (335)
T ss_pred HHHHHHHHHhCCCCEEEEeccCChHHHHHHHHHHH---HcCCCCeEEEEE
Confidence 346788889999999999 8999999987655444 334467765544
No 291
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=56.50 E-value=92 Score=33.23 Aligned_cols=50 Identities=22% Similarity=0.234 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHcCC--eEEEeeCCCCCcHhHHHHhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEEeCChh
Q 006566 219 VFSPLVEKCKKYGR--AVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPV 287 (640)
Q Consensus 219 ~f~~lV~~~Ke~g~--aIRIGvNhGSLs~ril~ryGdtp~gMVeSAle~~~i~e~~~F~diviSmKsSn~~ 287 (640)
.+.++++.+++++. .+.|-|| |+|-. +.++-+.+.|.+.+-||+.+.++.
T Consensus 77 dl~~li~~i~~~~~l~~i~itTN-G~ll~------------------~~~~~L~~aGl~~v~ISlDs~~~e 128 (329)
T PRK13361 77 GCDQLVARLGKLPGLEELSLTTN-GSRLA------------------RFAAELADAGLKRLNISLDTLRPE 128 (329)
T ss_pred cHHHHHHHHHhCCCCceEEEEeC-hhHHH------------------HHHHHHHHcCCCeEEEEeccCCHH
Confidence 36778888888763 5777887 55411 234555667777788888877654
No 292
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=56.46 E-value=40 Score=34.93 Aligned_cols=48 Identities=19% Similarity=0.288 Sum_probs=32.0
Q ss_pred HHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEEeCChh
Q 006566 220 FSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPV 287 (640)
Q Consensus 220 f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGdtp~gMVeSAle~~~i~e~~~F~diviSmKsSn~~ 287 (640)
+.++++.+|++|..+-|=|| |++..+. +.+++.. .+-+.||+|+.+..
T Consensus 143 l~~l~~~~k~~g~~~~i~Tn-G~~~~~~-----------------~~~ll~~--~d~~~isl~~~~~~ 190 (295)
T TIGR02494 143 ALALLQACHERGIHTAVETS-GFTPWET-----------------IEKVLPY--VDLFLFDIKHLDDE 190 (295)
T ss_pred HHHHHHHHHHcCCcEeeeCC-CCCCHHH-----------------HHHHHhh--CCEEEEeeccCChH
Confidence 46899999999988888777 5664321 1133333 33467999998853
No 293
>PTZ00081 enolase; Provisional
Probab=56.44 E-value=47 Score=37.58 Aligned_cols=80 Identities=13% Similarity=0.184 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHhhcCCCCcceeeccC--CCHHHHHHHhhh--cCceeeCCCCCCchhhhccccccchHHHHHHHhhhH
Q 006566 142 KREADACFEIKNSLVQKNYNIPLVADIH--FAPSVALRVAEC--FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIE 217 (640)
Q Consensus 142 ~~~A~~l~~I~~~L~~~g~~iPLVADIH--F~~~~Al~Aa~~--v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~ 217 (640)
.++-+.+.++++++ |-.+||++|=. .|+.-+..+++. ++-|.|-|+.+|.-..
T Consensus 308 ~~D~eg~~~Lt~~l---g~~i~IvgDE~~~tn~~~l~~~I~~~aad~i~iKvnqiGGITe-------------------- 364 (439)
T PTZ00081 308 QDDWEAYAKLTAAI---GQKVQIVGDDLLVTNPTRIKKAIEKKACNALLLKVNQIGTVTE-------------------- 364 (439)
T ss_pred cccHHHHHHHHHhh---CCCceEEcCCcccCCHHHHHHHHHhCCCCEEEeccccccCHHH--------------------
Confidence 36678888888853 34799999954 568888888875 9999999999997442
Q ss_pred hhHHHHHHHHHHcCCeEEEeeCCCCCcHh
Q 006566 218 EVFSPLVEKCKKYGRAVRIGTNHGSLSDR 246 (640)
Q Consensus 218 ~~f~~lV~~~Ke~g~aIRIGvNhGSLs~r 246 (640)
...+++.|+++|+.+=|+--+|.-.+.
T Consensus 365 --~l~~a~lA~~~Gi~~iishrsgETed~ 391 (439)
T PTZ00081 365 --AIEAAKLAQKNGWGVMVSHRSGETEDT 391 (439)
T ss_pred --HHHHHHHHHHcCCcEEEeCCCchhHHH
Confidence 677999999999999887666655543
No 294
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=56.24 E-value=2.1e+02 Score=31.03 Aligned_cols=85 Identities=12% Similarity=0.156 Sum_probs=55.5
Q ss_pred cCCCCceEEEeccCCCCCCHHHHHHHHHHHH-HcCCCEEEEecC--C-HHHHHHHHHHHHHhhcCCCCcceeeccC--CC
Q 006566 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIA-DQGADLVRITVQ--G-KREADACFEIKNSLVQKNYNIPLVADIH--FA 171 (640)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~rl~-~aGceiVRvtvp--~-~~~A~~l~~I~~~L~~~g~~iPLVADIH--F~ 171 (640)
+||..+=+|..-.+....+.+..++++.+.. +.|..-+.+-+- + .++.+-+..+++.+ |-++.|..|-| |+
T Consensus 123 LGg~~r~~v~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~KiKvg~~~~~~d~~~v~~~re~~---g~~~~l~~DaN~~~~ 199 (368)
T TIGR02534 123 LGGRVRDSVDVTWTLASGDTDRDIAEAEERIEEKRHRSFKLKIGARDPADDVAHVVAIAKAL---GDRASVRVDVNAAWD 199 (368)
T ss_pred hCCCCCCceEEEEEEeCCCHHHHHHHHHHHHHhcCcceEEEEeCCCCcHHHHHHHHHHHHhc---CCCcEEEEECCCCCC
Confidence 4665332333222223344555678888876 479999998762 3 35788888888863 55788999987 55
Q ss_pred HHHHHHHhhhcCce
Q 006566 172 PSVALRVAECFDKI 185 (640)
Q Consensus 172 ~~~Al~Aa~~v~KV 185 (640)
+.-|+..++.+++.
T Consensus 200 ~~~A~~~~~~l~~~ 213 (368)
T TIGR02534 200 ERTALHYLPQLADA 213 (368)
T ss_pred HHHHHHHHHHHHhc
Confidence 67777766666664
No 295
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=56.07 E-value=79 Score=33.88 Aligned_cols=91 Identities=30% Similarity=0.334 Sum_probs=57.2
Q ss_pred HHHHHHHHHHcCCCEEEEecC--CHHHHHHHHHHHHH-hhcCCCCcceee-------cc----CCCHHHHH----HHhhh
Q 006566 120 TVEEVMRIADQGADLVRITVQ--GKREADACFEIKNS-LVQKNYNIPLVA-------DI----HFAPSVAL----RVAEC 181 (640)
Q Consensus 120 tv~Qi~rl~~aGceiVRvtvp--~~~~A~~l~~I~~~-L~~~g~~iPLVA-------DI----HF~~~~Al----~Aa~~ 181 (640)
-+.+.+..+.+|++-|=+|+. +..|.+.+++|-+- .+...+.+|+|| ++ |+++.+.- .|+|.
T Consensus 99 ~~~~ve~ai~lgadAV~~~Vy~Gse~e~~~i~~~~~v~~~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaael 178 (265)
T COG1830 99 LVATVEDAIRLGADAVGATVYVGSETEREMIENISQVVEDAHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAEL 178 (265)
T ss_pred eeeeHHHHHhCCCcEEEEEEecCCcchHHHHHHHHHHHHHHHHcCCceEEEEeccCCcccccccccHHHHHHHHHHHHHh
Confidence 344455556789999999864 44555555544321 134567799999 45 99998777 55555
Q ss_pred -cCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEE
Q 006566 182 -FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVR 235 (640)
Q Consensus 182 -v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIR 235 (640)
+|=|-.| ||... |.|+.+|+.|- -++-|+
T Consensus 179 GADIiK~~---------------ytg~~---------e~F~~vv~~~~-vpVvia 208 (265)
T COG1830 179 GADIIKTK---------------YTGDP---------ESFRRVVAACG-VPVVIA 208 (265)
T ss_pred cCCeEeec---------------CCCCh---------HHHHHHHHhCC-CCEEEe
Confidence 5555544 33211 46999999997 444443
No 296
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=56.02 E-value=2.8e+02 Score=29.59 Aligned_cols=148 Identities=18% Similarity=0.336 Sum_probs=89.1
Q ss_pred EeccCCCC-CCHHHHHHHHHHHHHc-CCCEEEEecCCH------HHHHHHHHHHHHhhcCCCC-cceeeccCCCHHHHHH
Q 006566 107 QTMTTNDT-KDVAGTVEEVMRIADQ-GADLVRITVQGK------READACFEIKNSLVQKNYN-IPLVADIHFAPSVALR 177 (640)
Q Consensus 107 QSMt~t~T-~Dv~atv~Qi~rl~~a-GceiVRvtvp~~------~~A~~l~~I~~~L~~~g~~-iPLVADIHF~~~~Al~ 177 (640)
.=|-||.- +..+..|.-.+--.++ |.+.|-+-|-+- +-.+.++.- +.|.++|.. +|.++| ||..|..
T Consensus 64 ~~lpNTaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~Llpd~~~tv~aa-~~L~~~Gf~vlpyc~d---d~~~ar~ 139 (248)
T cd04728 64 TLLPNTAGCRTAEEAVRTARLAREALGTDWIKLEVIGDDKTLLPDPIETLKAA-EILVKEGFTVLPYCTD---DPVLAKR 139 (248)
T ss_pred EECCCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCccccccCHHHHHHHH-HHHHHCCCEEEEEeCC---CHHHHHH
Confidence 33555553 4445555433333334 669999987552 123333333 346667888 789988 6888888
Q ss_pred Hhhh-cCceeeCC--CCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCCC
Q 006566 178 VAEC-FDKIRVNP--GNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDS 254 (640)
Q Consensus 178 Aa~~-v~KVRINP--GN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGdt 254 (640)
.++. ++-| -| -=||.+.. ..+.+| ++.+++. .++|+=++-.- .|
T Consensus 140 l~~~G~~~v--mPlg~pIGsg~G------i~~~~~----------I~~I~e~---~~vpVI~egGI------------~t 186 (248)
T cd04728 140 LEDAGCAAV--MPLGSPIGSGQG------LLNPYN----------LRIIIER---ADVPVIVDAGI------------GT 186 (248)
T ss_pred HHHcCCCEe--CCCCcCCCCCCC------CCCHHH----------HHHHHHh---CCCcEEEeCCC------------CC
Confidence 8787 8887 77 56665432 111111 2222222 46788666422 35
Q ss_pred hHHHHHHHHHHHHHHHHCCCCcEEEE---EEeCChhhHHHHHHHHHHH
Q 006566 255 PRGMVESAFEFARICRKLDFHNFLFS---MKASNPVVMVQAYRLLVAE 299 (640)
Q Consensus 255 p~gMVeSAle~~~i~e~~~F~diviS---mKsSn~~~mV~AyRlL~~~ 299 (640)
| |.+..+-++|++-+++- .||.||..|.++++.-++.
T Consensus 187 p--------eda~~AmelGAdgVlV~SAIt~a~dP~~ma~af~~Av~a 226 (248)
T cd04728 187 P--------SDAAQAMELGADAVLLNTAIAKAKDPVAMARAFKLAVEA 226 (248)
T ss_pred H--------HHHHHHHHcCCCEEEEChHhcCCCCHHHHHHHHHHHHHH
Confidence 5 23344445899887763 6999999999999997754
No 297
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=55.68 E-value=19 Score=39.13 Aligned_cols=62 Identities=21% Similarity=0.296 Sum_probs=43.9
Q ss_pred HHHHHHHHHHcCCCEEEEec-C------------CH--HHHHHHHHHHHHhhcCCCCcceeec--cCCCHHHHHHHhhh-
Q 006566 120 TVEEVMRIADQGADLVRITV-Q------------GK--READACFEIKNSLVQKNYNIPLVAD--IHFAPSVALRVAEC- 181 (640)
Q Consensus 120 tv~Qi~rl~~aGceiVRvtv-p------------~~--~~A~~l~~I~~~L~~~g~~iPLVAD--IHF~~~~Al~Aa~~- 181 (640)
|.+..++|.++||+.|++.. | +. -...++.++++. .++|++|| |...-.++ +|+.+
T Consensus 147 t~e~a~~l~~aGad~I~V~~G~G~~~~tr~~~g~g~~~~~l~ai~ev~~a-----~~~pVIadGGIr~~~Di~-KALa~G 220 (321)
T TIGR01306 147 TPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKA-----ARKPIIADGGIRTHGDIA-KSIRFG 220 (321)
T ss_pred CHHHHHHHHHcCcCEEEECCCCCccccceeeeccCCCchHHHHHHHHHHh-----cCCeEEEECCcCcHHHHH-HHHHcC
Confidence 78899999999999999882 1 11 135788899885 46999999 55555555 44444
Q ss_pred cCceee
Q 006566 182 FDKIRV 187 (640)
Q Consensus 182 v~KVRI 187 (640)
++.|=+
T Consensus 221 Ad~Vmi 226 (321)
T TIGR01306 221 ASMVMI 226 (321)
T ss_pred CCEEee
Confidence 565544
No 298
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=55.67 E-value=1.9e+02 Score=31.78 Aligned_cols=151 Identities=22% Similarity=0.222 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHcCCCEEEE-ecCCHHHHHH-HHHHHHHhhcCCCCcceeeccCCC----------HHHHHHHhhh--c
Q 006566 117 VAGTVEEVMRIADQGADLVRI-TVQGKREADA-CFEIKNSLVQKNYNIPLVADIHFA----------PSVALRVAEC--F 182 (640)
Q Consensus 117 v~atv~Qi~rl~~aGceiVRv-tvp~~~~A~~-l~~I~~~L~~~g~~iPLVADIHF~----------~~~Al~Aa~~--v 182 (640)
+++-.+|+.-|.+-|+|++=| |+.|..+|++ +..+++.-.++|..+|+++-.-|+ ++.++..++. .
T Consensus 142 ~~ay~eq~~~Li~gG~D~iLiET~~D~l~~KaA~~a~~~~~~~~~~~LPv~~s~Ti~~sG~tl~Gq~~~a~~~~l~~~~~ 221 (311)
T COG0646 142 VEAYREQVEGLIDGGADLILIETIFDTLNAKAAVFAAREVFEELGVRLPVMISGTITDSGRTLSGQTIEAFLNSLEHLGP 221 (311)
T ss_pred HHHHHHHHHHHHhCCCcEEEEehhccHHHHHHHHHHHHHHHHhcCCcccEEEEEEEecCceecCCCcHHHHHHHhhccCC
Confidence 477889999999999999988 5788887764 666777777899999999865443 6667776666 5
Q ss_pred CceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHH--hCCChHHHHH
Q 006566 183 DKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSY--YGDSPRGMVE 260 (640)
Q Consensus 183 ~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~r--yGdtp~gMVe 260 (640)
+-|=+|=+- |. + .+++.+..+-+. .+..+=.==|.| |+.-.=++ |-.+|+-|-+
T Consensus 222 ~~vGlNCa~-Gp-~------------------~m~~~l~~ls~~---~~~~vs~~PNAG-LP~~~g~~~~Y~~~p~~~a~ 277 (311)
T COG0646 222 DAVGLNCAL-GP-D------------------EMRPHLRELSRI---ADAFVSVYPNAG-LPNAFGERAVYDLTPEYMAE 277 (311)
T ss_pred cEEeecccc-CH-H------------------HHHHHHHHHHhc---cCceEEEeCCCC-CCcccCCccccCCCHHHHHH
Confidence 555555432 11 1 122223333222 223444445665 55544444 7789999998
Q ss_pred HHHHHHHHHHHCCCCcEEEEEEeCChhhHHHHHHHH
Q 006566 261 SAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLL 296 (640)
Q Consensus 261 SAle~~~i~e~~~F~diviSmKsSn~~~mV~AyRlL 296 (640)
...+|+ +.|+=|||==+=-+.|. .|++.+..
T Consensus 278 ~~~~f~----~~g~vnIvGGCCGTTPe-HIraia~~ 308 (311)
T COG0646 278 ALAEFA----EEGGVNIVGGCCGTTPE-HIRAIAEA 308 (311)
T ss_pred HHHHHH----HhCCceeeccccCCCHH-HHHHHHHH
Confidence 887776 46777777666666543 45555543
No 299
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=55.53 E-value=40 Score=33.52 Aligned_cols=57 Identities=12% Similarity=0.142 Sum_probs=41.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHH-HHHHHHHhhcCCCCcceeeccC
Q 006566 112 NDTKDVAGTVEEVMRIADQGADLVRITVQGKREADA-CFEIKNSLVQKNYNIPLVADIH 169 (640)
Q Consensus 112 t~T~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~A~~-l~~I~~~L~~~g~~iPLVADIH 169 (640)
..|....+-.+...++.+.|++++=|++.+..+..+ ++.|++... .+++.|+++|.+
T Consensus 40 ~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~-~~~~fpil~D~~ 97 (203)
T cd03016 40 VCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTG-VEIPFPIIADPD 97 (203)
T ss_pred cCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcC-CCCceeEEECch
Confidence 344555555556667788999999999999876655 455766433 689999999965
No 300
>PRK05588 histidinol-phosphatase; Provisional
Probab=55.20 E-value=56 Score=33.40 Aligned_cols=81 Identities=11% Similarity=0.134 Sum_probs=58.8
Q ss_pred hHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEEeCChhhHHHHHHH
Q 006566 216 IEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRL 295 (640)
Q Consensus 216 I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGdtp~gMVeSAle~~~i~e~~~F~diviSmKsSn~~~mV~AyRl 295 (640)
..+.+.+++++|+++|++|= +|.++|.+.. + + .| ..+.++.|.+.|-..|+++-=|-.+...-.-+..
T Consensus 164 ~~~~~~~il~~~~~~g~~lE--INt~~l~~~~-~-~--~~------~~~~l~~~~~~g~~~i~lgSDAH~~~~vg~~~~~ 231 (255)
T PRK05588 164 FKEIIDEILKVLIEKEKVLE--INTRRLDDKR-S-V--EN------LVKIYKRFYELGGKYITLGSDAHNIEDIGNNFKF 231 (255)
T ss_pred HHHHHHHHHHHHHHcCCEEE--EECcccCCCC-C-C--CC------HHHHHHHHHHcCCcEEEEECCCCCHHHHHhhHHH
Confidence 44557888999999999995 4778875321 1 1 12 2568889999998778998888887765556777
Q ss_pred HHHHHHHcCCCcce
Q 006566 296 LVAEMYVHGWDYPL 309 (640)
Q Consensus 296 L~~~m~~~g~dyPL 309 (640)
..+.+.+.|++ +.
T Consensus 232 ~~~~l~~~G~~-~~ 244 (255)
T PRK05588 232 ALEIAEYCNLK-PV 244 (255)
T ss_pred HHHHHHHcCCE-EE
Confidence 77777888876 44
No 301
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=55.00 E-value=1e+02 Score=34.48 Aligned_cols=83 Identities=18% Similarity=0.263 Sum_probs=61.4
Q ss_pred HHHHHHcCCeEEEeeCCCCCcHhHHHHhCC-ChHHHHHHHHHHHHHHHHCCCCcEEEEEEeCChhhHHHHHHHHHHHHHH
Q 006566 224 VEKCKKYGRAVRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYV 302 (640)
Q Consensus 224 V~~~Ke~g~aIRIGvNhGSLs~ril~ryGd-tp~gMVeSAle~~~i~e~~~F~diviSmKsSn~~~mV~AyRlL~~~m~~ 302 (640)
++.+++.|+- ||..+-=|++++++.+-|- ....++.. .+..+.+.||.+|.+-+=--=|..+.+....=.+...+
T Consensus 140 ~~~l~~~GvN-RiSlGVQsf~~~~lk~lgR~h~~~~~~~---a~~~~~~~g~~~in~DLIyglP~QT~~~~~~~l~~a~~ 215 (416)
T COG0635 140 FKALKEAGVN-RISLGVQSFNDEVLKALGRIHDEEEAKE---AVELARKAGFTSINIDLIYGLPGQTLESLKEDLEQALE 215 (416)
T ss_pred HHHHHHcCCC-EEEeccccCCHHHHHHhcCCCCHHHHHH---HHHHHHHcCCCcEEEEeecCCCCCCHHHHHHHHHHHHh
Confidence 4788999999 9999999999999999984 34344444 44556679999999988776666777777765555544
Q ss_pred cCCCcceEEEe
Q 006566 303 HGWDYPLHLGV 313 (640)
Q Consensus 303 ~g~dyPLHLGV 313 (640)
.+ |=||-+
T Consensus 216 l~---pdhis~ 223 (416)
T COG0635 216 LG---PDHLSL 223 (416)
T ss_pred CC---CCEEEE
Confidence 44 556643
No 302
>PRK14016 cyanophycin synthetase; Provisional
Probab=54.54 E-value=27 Score=41.57 Aligned_cols=20 Identities=20% Similarity=0.255 Sum_probs=15.3
Q ss_pred HHHHHHHHcCCeEEEeeCCCC
Q 006566 222 PLVEKCKKYGRAVRIGTNHGS 242 (640)
Q Consensus 222 ~lV~~~Ke~g~aIRIGvNhGS 242 (640)
.+++.|+++|++.+. .+.||
T Consensus 164 ~I~~~A~~~gi~~~~-l~~~~ 183 (727)
T PRK14016 164 AIVDAAEARGIPYIR-LGDGS 183 (727)
T ss_pred HHHHHHHHcCCCEEE-eCCCC
Confidence 699999999998744 44444
No 303
>PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional
Probab=54.41 E-value=3.3e+02 Score=30.61 Aligned_cols=29 Identities=14% Similarity=0.317 Sum_probs=25.9
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCCH
Q 006566 114 TKDVAGTVEEVMRIADQGADLVRITVQGK 142 (640)
Q Consensus 114 T~Dv~atv~Qi~rl~~aGceiVRvtvp~~ 142 (640)
.++++..+++++.|.+.|..-|.++.++.
T Consensus 167 sr~~e~Vv~Ei~~l~~~g~kei~l~~~d~ 195 (440)
T PRK14862 167 SRPIGDVLREAERLVKAGVKELLVISQDT 195 (440)
T ss_pred ccCHHHHHHHHHHHHHCCCceEEEEecCh
Confidence 57899999999999999999999987763
No 304
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=54.41 E-value=2.2e+02 Score=29.83 Aligned_cols=74 Identities=16% Similarity=0.179 Sum_probs=49.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhh-cCceeeCCCCC
Q 006566 115 KDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGNF 192 (640)
Q Consensus 115 ~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~-v~KVRINPGN~ 192 (640)
.|.--.-.|+....++|||+|=+-+-.... +.|+++.+.-++ +.+-.++|+|=-. -+..|.+. ++=|=+|+=|.
T Consensus 117 kdfi~~~~qi~~a~~~GAD~VlLi~~~l~~-~~l~~li~~a~~--lGl~~lvevh~~~-E~~~A~~~gadiIgin~rdl 191 (260)
T PRK00278 117 KDFIIDPYQIYEARAAGADAILLIVAALDD-EQLKELLDYAHS--LGLDVLVEVHDEE-ELERALKLGAPLIGINNRNL 191 (260)
T ss_pred eeecCCHHHHHHHHHcCCCEEEEEeccCCH-HHHHHHHHHHHH--cCCeEEEEeCCHH-HHHHHHHcCCCEEEECCCCc
Confidence 444444459999999999999887765322 344444444333 5688999999544 44566666 77777886555
No 305
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=54.27 E-value=21 Score=38.90 Aligned_cols=49 Identities=22% Similarity=0.283 Sum_probs=37.0
Q ss_pred CCHHHHHHH----HHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCC-Ccceee
Q 006566 115 KDVAGTVEE----VMRIADQGADLVRITVQGKREADACFEIKNSLVQKNY-NIPLVA 166 (640)
Q Consensus 115 ~Dv~atv~Q----i~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~-~iPLVA 166 (640)
-|-++|+++ ....++||||+| +|+-===--.+.||+.|.+.|+ ++|+++
T Consensus 135 idND~Tl~~L~~~Avs~A~AGADiV---APSdMMDGrV~aIR~aLd~~g~~~v~ImS 188 (320)
T cd04823 135 ILNDETVEVLCKQALVQAEAGADIV---APSDMMDGRIGAIREALDAEGFTNVSILS 188 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHhCCCEE---EcccchhhHHHHHHHHHHHCCCCCCceee
Confidence 455667654 555689999998 4544334567899999999999 699986
No 306
>PRK12655 fructose-6-phosphate aldolase; Reviewed
Probab=54.23 E-value=2.1e+02 Score=29.69 Aligned_cols=78 Identities=23% Similarity=0.276 Sum_probs=58.3
Q ss_pred cCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHH
Q 006566 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALR 177 (640)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~ 177 (640)
+|...|+.+|... .|.++.++|.++|.+.+-. |=|-+|--. +-++.|++ |.++|+++-+=+ =|++.=|+.
T Consensus 50 ~~~~~~v~~qv~~----~d~e~mi~eA~~l~~~~~n-v~IKIP~T~--~Gl~Ai~~-L~~~GI~vn~T~--vfs~~Qa~~ 119 (220)
T PRK12655 50 IGGEGILFAQTMS----RDAQGMVEEAKRLRNAIPG-IVVKIPVTA--EGLAAIKK-LKKEGIPTLGTA--VYSAAQGLL 119 (220)
T ss_pred hCCCCCEEEEEee----CCHHHHHHHHHHHHHhCCC-EEEEeCCCH--HHHHHHHH-HHHCCCceeEeE--ecCHHHHHH
Confidence 4556799999853 4899999999999999866 456778666 44777764 777787766544 588999988
Q ss_pred Hhhh-cCce
Q 006566 178 VAEC-FDKI 185 (640)
Q Consensus 178 Aa~~-v~KV 185 (640)
|++. ++=|
T Consensus 120 Aa~aGa~yI 128 (220)
T PRK12655 120 AALAGAKYV 128 (220)
T ss_pred HHHcCCeEE
Confidence 8887 6544
No 307
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=54.06 E-value=1.2e+02 Score=31.77 Aligned_cols=138 Identities=17% Similarity=0.198 Sum_probs=83.6
Q ss_pred cCCCCceEEEeccC--CCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhc-----CCCCcce--ee--
Q 006566 98 IGSEHPIRVQTMTT--NDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQ-----KNYNIPL--VA-- 166 (640)
Q Consensus 98 IGG~~PI~VQSMt~--t~T~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~-----~g~~iPL--VA-- 166 (640)
|||+. +.|+|+.. +|..+.+.+.+++++|.+ ||+|=..=.+.+ .-+..+.+.+.. ..-.+++ .-
T Consensus 20 I~Gd~-v~V~~li~~g~dpH~ye~~p~d~~~l~~--Adliv~~G~~le--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 94 (286)
T cd01019 20 IMGGV-GEVEVLVPPGASPHDYELRPSDARKLQE--ADLVVWIGPDLE--AFLDKVLQGRKKGKVLTLAKLIDLKTLEDG 94 (286)
T ss_pred HcCCC-cceEEecCCCCCccCCCCCHHHHHHHHh--CCEEEEeCCCch--HHHHHHHHhcCcCceEecccCCcccccccc
Confidence 67764 67788765 566999999999999998 466655545554 245555444310 0000122 10
Q ss_pred -------------------------c--cCCCHHHHHHHhhh-cCc-eeeCCCCCCchhhhccccccchHHHHHHHhhhH
Q 006566 167 -------------------------D--IHFAPSVALRVAEC-FDK-IRVNPGNFADRRAQFEQLEYTDDEYQKELQHIE 217 (640)
Q Consensus 167 -------------------------D--IHF~~~~Al~Aa~~-v~K-VRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~ 217 (640)
| +-++|..+...++. .++ +++.|.|=..-+++ -++|.++|+.+.
T Consensus 95 ~~~~~~~h~~~~~~~~~~~~~~~~~dPHiWldp~n~~~~a~~I~~~L~~~dP~~~~~y~~N-------~~~~~~~L~~l~ 167 (286)
T cd01019 95 ASHGDHEHDHEHAHGEHDGHEEGGLDPHLWLSPENAAEVAQAVAEKLSALDPDNAATYAAN-------LEAFNARLAELD 167 (286)
T ss_pred cccccccccccccccccCCCCCCCCCCccCCCHHHHHHHHHHHHHHHHHHCchhHHHHHHH-------HHHHHHHHHHHH
Confidence 1 11667888887777 555 45888872211111 356888998888
Q ss_pred hhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhC
Q 006566 218 EVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYG 252 (640)
Q Consensus 218 ~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryG 252 (640)
++.+..+..++. +. +=+-|.++. -+..+||
T Consensus 168 ~~~~~~~~~~~~--~~--~v~~H~af~-Yl~~~~g 197 (286)
T cd01019 168 ATIKERLAPVKT--KP--FFVFHDAYG-YFEKRYG 197 (286)
T ss_pred HHHHHHhhccCC--Ce--EEEecccHH-HHHHHcC
Confidence 888887776653 33 245677774 4555555
No 308
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=54.03 E-value=62 Score=35.00 Aligned_cols=63 Identities=21% Similarity=0.392 Sum_probs=48.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCCCcceeeccC--CCHHHHHHHhhhcCce
Q 006566 115 KDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIH--FAPSVALRVAECFDKI 185 (640)
Q Consensus 115 ~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~iPLVADIH--F~~~~Al~Aa~~v~KV 185 (640)
.|.+..++++.++.+.|..-+.+-+ .+.++.+++. -|-.+.|..|-| |++.-|+..++.++..
T Consensus 125 ~~~~~~~~~a~~~~~~Gf~~~KiKv-----~~~v~avre~---~G~~~~l~vDaN~~w~~~~A~~~~~~l~~~ 189 (361)
T cd03322 125 RDIPELLEAVERHLAQGYRAIRVQL-----PKLFEAVREK---FGFEFHLLHDVHHRLTPNQAARFGKDVEPY 189 (361)
T ss_pred CCHHHHHHHHHHHHHcCCCeEeeCH-----HHHHHHHHhc---cCCCceEEEECCCCCCHHHHHHHHHHhhhc
Confidence 4678889999999999999999976 5666666663 355789999986 5667777766666654
No 309
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=53.94 E-value=97 Score=33.73 Aligned_cols=81 Identities=14% Similarity=0.147 Sum_probs=54.6
Q ss_pred HHHHHHHcCCeEEEeeCCCCCcHhHHHHhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEEeCChhhHHHHHHHHHHHHHH
Q 006566 223 LVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYV 302 (640)
Q Consensus 223 lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGdtp~gMVeSAle~~~i~e~~~F~diviSmKsSn~~~mV~AyRlL~~~m~~ 302 (640)
.++..|+.|+. ||-+--=|.+++++...|-. .=++.+.+-++.|++.||.++.+.+=--=|..+.+..+...+.+.+
T Consensus 105 ~l~~lk~~G~n-risiGvQS~~d~vL~~l~R~--~~~~~~~~ai~~lr~~G~~~v~~dlI~GlPgqt~e~~~~tl~~~~~ 181 (353)
T PRK05904 105 QINLLKKNKVN-RISLGVQSMNNNILKQLNRT--HTIQDSKEAINLLHKNGIYNISCDFLYCLPILKLKDLDEVFNFILK 181 (353)
T ss_pred HHHHHHHcCCC-EEEEecccCCHHHHHHcCCC--CCHHHHHHHHHHHHHcCCCcEEEEEeecCCCCCHHHHHHHHHHHHh
Confidence 35777777853 54444456789999999831 1245677888899999998777766544455667777776666655
Q ss_pred cCCC
Q 006566 303 HGWD 306 (640)
Q Consensus 303 ~g~d 306 (640)
.+.+
T Consensus 182 l~p~ 185 (353)
T PRK05904 182 HKIN 185 (353)
T ss_pred cCCC
Confidence 5544
No 310
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=53.79 E-value=1.7e+02 Score=31.03 Aligned_cols=108 Identities=20% Similarity=0.247 Sum_probs=70.5
Q ss_pred HHHHHHHHcCCCEEEEecCCH----HHHHHHHHHHHHhhcCCCCcceeeccCCCHH---------HHHHHhhh-cCceee
Q 006566 122 EEVMRIADQGADLVRITVQGK----READACFEIKNSLVQKNYNIPLVADIHFAPS---------VALRVAEC-FDKIRV 187 (640)
Q Consensus 122 ~Qi~rl~~aGceiVRvtvp~~----~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~---------~Al~Aa~~-v~KVRI 187 (640)
......+..|.|+|-|-..+. +..+.++.+.+.++...-+.-+||..-.|+. +-..|++. ++-+=|
T Consensus 71 ~aa~~~a~~GvdyvKvGl~g~~~~~~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~r~~~~~p~~l~~~a~~aG~~gvMl 150 (235)
T PF04476_consen 71 LAALGAAATGVDYVKVGLFGCKDYDEAIEALEAVVRAVKDFDPDKKVVAVGYADAQRVGSISPLDLPEIAAEAGFDGVML 150 (235)
T ss_pred HHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHHHHHHHhhhCCCcEEEEEEecchhhhcCCCHHHHHHHHHHcCCCEEEE
Confidence 346667789999999997643 3345666776666665556678876555543 22245555 766665
Q ss_pred CCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHh
Q 006566 188 NPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDR 246 (640)
Q Consensus 188 NPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~r 246 (640)
--..= |++.-|+... .+.+..||+.|+++|.-. |. .|||...
T Consensus 151 DTa~K-dg~~L~d~~~-------------~~~L~~Fv~~ar~~gL~~--aL-AGSL~~~ 192 (235)
T PF04476_consen 151 DTADK-DGGSLFDHLS-------------EEELAEFVAQARAHGLMC--AL-AGSLRFE 192 (235)
T ss_pred ecccC-CCCchhhcCC-------------HHHHHHHHHHHHHccchh--hc-cccCChh
Confidence 54332 3344455544 345889999999999876 66 8999765
No 311
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=53.67 E-value=1.6e+02 Score=31.69 Aligned_cols=50 Identities=16% Similarity=0.026 Sum_probs=34.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEe---cCC--HHH-HHHHHHHHHHhhcCCCCcceee
Q 006566 113 DTKDVAGTVEEVMRIADQGADLVRIT---VQG--KRE-ADACFEIKNSLVQKNYNIPLVA 166 (640)
Q Consensus 113 ~T~Dv~atv~Qi~rl~~aGceiVRvt---vp~--~~~-A~~l~~I~~~L~~~g~~iPLVA 166 (640)
...+.+..+++++.+.+.|+.-|.++ -|+ .+. .+.++.||+. +.++.+.|
T Consensus 68 y~ls~eeI~e~~~~~~~~G~~~i~l~gG~~p~~~~~~~~~i~~~Ik~~----~~~i~~~~ 123 (343)
T TIGR03551 68 YLLSLEEIAERAAEAWKAGATEVCIQGGIHPDLDGDFYLDILRAVKEE----VPGMHIHA 123 (343)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHH----CCCceEEe
Confidence 35788999999999999999999998 222 222 4555666553 44455544
No 312
>PRK00077 eno enolase; Provisional
Probab=53.39 E-value=1.6e+02 Score=33.08 Aligned_cols=101 Identities=15% Similarity=0.114 Sum_probs=74.8
Q ss_pred CCHHHHHHHHHHHHH-cCCCEEEEecCC-HHHHHHHHHHHHHhhcCCCCcceeeccCC--CHHHHHHHhhh--cCceeeC
Q 006566 115 KDVAGTVEEVMRIAD-QGADLVRITVQG-KREADACFEIKNSLVQKNYNIPLVADIHF--APSVALRVAEC--FDKIRVN 188 (640)
Q Consensus 115 ~Dv~atv~Qi~rl~~-aGceiVRvtvp~-~~~A~~l~~I~~~L~~~g~~iPLVADIHF--~~~~Al~Aa~~--v~KVRIN 188 (640)
.+.+..++...++.+ .+ |+=|-=|= .++-+.+.++++++ |-.+||++|=+| ++.-...+++. ++-|.|-
T Consensus 261 ~s~~e~~~~~~~l~e~y~--i~~iEdPl~~~D~~g~~~L~~~~---~~~ipI~gdE~~~t~~~~~~~~i~~~a~d~v~ik 335 (425)
T PRK00077 261 LTSEEMIDYLAELVDKYP--IVSIEDGLDENDWEGWKLLTEKL---GDKVQLVGDDLFVTNTKRLKKGIEKGAANSILIK 335 (425)
T ss_pred CCHHHHHHHHHHHHhhCC--cEEEEcCCCCccHHHHHHHHHhc---CCCCeEEcCCCccCCHHHHHHHHHhCCCCEEEeC
Confidence 466777777777776 45 44455443 35788899998863 336999999986 68888887764 9999999
Q ss_pred CCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCc
Q 006566 189 PGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLS 244 (640)
Q Consensus 189 PGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs 244 (640)
|..+|.-.. ..++++.|+++|+..= +.|+|.+
T Consensus 336 ~~~~GGite----------------------a~~ia~lA~~~gi~~~--vsh~sgE 367 (425)
T PRK00077 336 VNQIGTLTE----------------------TLDAIELAKRAGYTAV--VSHRSGE 367 (425)
T ss_pred ccccCCHHH----------------------HHHHHHHHHHcCCeEE--EeCCCCc
Confidence 999998443 6789999999999653 4466653
No 313
>cd06826 PLPDE_III_AR2 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme, Alanine Racemase 2. This subfamily is composed of bacterial alanine racemases (EC 5.1.1.1) with similarity to Yersinia pestis and Vibrio cholerae alanine racemase (AR) 2. ARs catalyze the interconversion between L- and D-alanine, an essential component of the peptidoglycan layer of bacterial cell walls. These proteins are similar to other bacterial ARs and are fold type III PLP-dependent enzymes containing contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=53.39 E-value=2.5e+02 Score=30.51 Aligned_cols=48 Identities=15% Similarity=0.101 Sum_probs=32.4
Q ss_pred HHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhh
Q 006566 124 VMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAE 180 (640)
Q Consensus 124 i~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~ 180 (640)
.+.+.++||+ +++|-+.+||..|++ .|++.|++.=--+.|.-...+++
T Consensus 45 a~~l~~~g~~--~f~Vas~~Ea~~lr~-------~Gi~~~ilvl~~~~~~e~~~~i~ 92 (365)
T cd06826 45 MPSIIAQNIP--CVGITSNEEARVVRE-------AGFTGKILRVRTATPSEIEDALA 92 (365)
T ss_pred HHHHHHCCCC--EEEEccHHHHHHHHh-------cCCCCCEEEEeCCCHHHHHHHHH
Confidence 4467789988 789999999987753 37777776543445544445554
No 314
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=53.32 E-value=4.1e+02 Score=30.62 Aligned_cols=155 Identities=19% Similarity=0.206 Sum_probs=93.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEe----c------CCHHHHHHHHHHHHHhhcCCCCcceee--c----cCC---CH---
Q 006566 115 KDVAGTVEEVMRIADQGADLVRIT----V------QGKREADACFEIKNSLVQKNYNIPLVA--D----IHF---AP--- 172 (640)
Q Consensus 115 ~Dv~atv~Qi~rl~~aGceiVRvt----v------p~~~~A~~l~~I~~~L~~~g~~iPLVA--D----IHF---~~--- 172 (640)
..++.-++=+..|.++|.+.+=+. . -+.+..+.++.|++.+ -++++.+ = +.+ .-
T Consensus 22 ~~t~dkl~Ia~~Ld~~Gv~~IE~~ggatfd~~~~Fl~e~p~e~l~~l~~~~----~~~~l~~l~r~~N~~G~~~~~dDvv 97 (467)
T PRK14041 22 MRTEDMLPALEAFDRMGFYSMEVWGGATFDVCVRFLNENPWERLKEIRKRL----KNTKIQMLLRGQNLVGYRHYADDVV 97 (467)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCCccchhhhcccCCCHHHHHHHHHHhC----CCCEEEEEeccccccCcccccchhh
Confidence 455666777788899999888772 1 2455788899998752 2355654 2 112 11
Q ss_pred -HHHHHHhhh-cCceeeC-CCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHH
Q 006566 173 -SVALRVAEC-FDKIRVN-PGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMS 249 (640)
Q Consensus 173 -~~Al~Aa~~-v~KVRIN-PGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ 249 (640)
.....|+++ ++.|||- |-| | + +.+.+.++.||++|.-+...+ +=+.+.
T Consensus 98 ~~fv~~A~~~Gvd~irif~~ln--d------------------~----~n~~~~i~~ak~~G~~v~~~i-~~t~~p---- 148 (467)
T PRK14041 98 ELFVKKVAEYGLDIIRIFDALN--D------------------I----RNLEKSIEVAKKHGAHVQGAI-SYTVSP---- 148 (467)
T ss_pred HHHHHHHHHCCcCEEEEEEeCC--H------------------H----HHHHHHHHHHHHCCCEEEEEE-EeccCC----
Confidence 113456667 8888862 111 1 1 246778899999999887333 111111
Q ss_pred HhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEEeCChhhHHHHHHHHHHHHHHcCCCcceEE
Q 006566 250 YYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHL 311 (640)
Q Consensus 250 ryGdtp~gMVeSAle~~~i~e~~~F~diviSmKsSn~~~mV~AyRlL~~~m~~~g~dyPLHL 311 (640)
+ .| .+.-++.++-+++.|-+ .|++|-+.=..+=...+.|+..+.++ ++.|+|+
T Consensus 149 ~--~t----~e~~~~~a~~l~~~Gad--~I~i~Dt~G~l~P~~v~~Lv~~lk~~-~~vpI~~ 201 (467)
T PRK14041 149 V--HT----LEYYLEFARELVDMGVD--SICIKDMAGLLTPKRAYELVKALKKK-FGVPVEV 201 (467)
T ss_pred C--CC----HHHHHHHHHHHHHcCCC--EEEECCccCCcCHHHHHHHHHHHHHh-cCCceEE
Confidence 2 24 34455666677888876 57788776555555555556555433 4567765
No 315
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=53.30 E-value=51 Score=35.99 Aligned_cols=69 Identities=16% Similarity=0.314 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHcCC--CEEEEecCC---HHHHHHHHHHHHHhhcCCCC-cceee-ccCCCHHHHHHHhhh-cCcee--e
Q 006566 118 AGTVEEVMRIADQGA--DLVRITVQG---KREADACFEIKNSLVQKNYN-IPLVA-DIHFAPSVALRVAEC-FDKIR--V 187 (640)
Q Consensus 118 ~atv~Qi~rl~~aGc--eiVRvtvp~---~~~A~~l~~I~~~L~~~g~~-iPLVA-DIHF~~~~Al~Aa~~-v~KVR--I 187 (640)
....+++.+|.+||+ |+|=|-+.. ..-.+.+++||++ ++ +|+|| |+= ++.-|..++++ +|-|+ +
T Consensus 96 ~~~~~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~-----~p~~~vi~g~V~-t~e~a~~l~~aGad~i~vg~ 169 (326)
T PRK05458 96 DDEYDFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKH-----LPETFVIAGNVG-TPEAVRELENAGADATKVGI 169 (326)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhh-----CCCCeEEEEecC-CHHHHHHHHHcCcCEEEECC
Confidence 346799999999955 998874332 2333446777764 76 99999 887 99999999999 99877 5
Q ss_pred CCCCC
Q 006566 188 NPGNF 192 (640)
Q Consensus 188 NPGN~ 192 (640)
-||-.
T Consensus 170 ~~G~~ 174 (326)
T PRK05458 170 GPGKV 174 (326)
T ss_pred CCCcc
Confidence 57754
No 316
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=53.05 E-value=41 Score=31.62 Aligned_cols=105 Identities=16% Similarity=0.089 Sum_probs=60.7
Q ss_pred ccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeE---EEeeCCCCCcHhHHHHhCCChHHHHHHHHHHHHHHHHCCCC
Q 006566 199 FEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAV---RIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFH 275 (640)
Q Consensus 199 F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aI---RIGvNhGSLs~ril~ryGdtp~gMVeSAle~~~i~e~~~F~ 275 (640)
|+.+|+.-..+....+. .+.+..+.+.++++|+.| =..++..+......+..-. -+.-++...+.+++|+++|-.
T Consensus 9 ~~~vE~~~~~~~~~~~~-~~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~i~~a~~lg~~ 86 (213)
T PF01261_consen 9 FDGVELRFDDGQPWDEK-DDEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDE-REEALEYLKKAIDLAKRLGAK 86 (213)
T ss_dssp HSEEEEEHHHHSHHTHH-HHHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSH-HHHHHHHHHHHHHHHHHHTBS
T ss_pred CCEEEEecCCCcccccc-hHHHHHHHHHHHHcCCeEEEEecccccccccccccCcchh-hHHHHHHHHHHHHHHHHhCCC
Confidence 44444444443333333 667888999999999993 2334443332210000000 145577888899999999998
Q ss_pred cEEEEEE---e-------CChhhHHHHHHHHHHHHHHcCC
Q 006566 276 NFLFSMK---A-------SNPVVMVQAYRLLVAEMYVHGW 305 (640)
Q Consensus 276 diviSmK---s-------Sn~~~mV~AyRlL~~~m~~~g~ 305 (640)
.+++..= . .+...+++..+.+++...+.|+
T Consensus 87 ~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv 126 (213)
T PF01261_consen 87 YIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGV 126 (213)
T ss_dssp EEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred ceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 8888733 1 1233445566666666555553
No 317
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=52.88 E-value=82 Score=32.88 Aligned_cols=86 Identities=15% Similarity=0.215 Sum_probs=63.4
Q ss_pred HHHHHHHHHcCCCEEEEecCCH---HHHHHHHHHHHHhhcCCCCccee-eccCCCHHHHHHHhhh-cCceeeCCCCCCch
Q 006566 121 VEEVMRIADQGADLVRITVQGK---READACFEIKNSLVQKNYNIPLV-ADIHFAPSVALRVAEC-FDKIRVNPGNFADR 195 (640)
Q Consensus 121 v~Qi~rl~~aGceiVRvtvp~~---~~A~~l~~I~~~L~~~g~~iPLV-ADIHF~~~~Al~Aa~~-v~KVRINPGN~~d~ 195 (640)
++.....+++||+-+|+-+... -..+.+..+++. +++|++ =|+=.+|.-+.+|.++ +|-|=+.-....+
T Consensus 73 ~~~A~~~~~~GA~aisvlte~~~f~g~~~~l~~v~~~-----v~iPvl~kdfi~~~~qi~~a~~~GAD~VlLi~~~l~~- 146 (260)
T PRK00278 73 VEIAKAYEAGGAACLSVLTDERFFQGSLEYLRAARAA-----VSLPVLRKDFIIDPYQIYEARAAGADAILLIVAALDD- 146 (260)
T ss_pred HHHHHHHHhCCCeEEEEecccccCCCCHHHHHHHHHh-----cCCCEEeeeecCCHHHHHHHHHcCCCEEEEEeccCCH-
Confidence 5777888999999999965433 346778888874 789998 5666667777788887 8888776555422
Q ss_pred hhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeE
Q 006566 196 RAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAV 234 (640)
Q Consensus 196 ~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aI 234 (640)
. .+..+++.|+++|.-.
T Consensus 147 ~----------------------~l~~li~~a~~lGl~~ 163 (260)
T PRK00278 147 E----------------------QLKELLDYAHSLGLDV 163 (260)
T ss_pred H----------------------HHHHHHHHHHHcCCeE
Confidence 1 3788999999987654
No 318
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=52.72 E-value=85 Score=33.01 Aligned_cols=94 Identities=18% Similarity=0.270 Sum_probs=64.1
Q ss_pred cCCCCceEEE-eccC--CCCCCHHHHHHHHHHHHHcCCCEEEEecCCH---------------HHHHHHHHHHHHhhcCC
Q 006566 98 IGSEHPIRVQ-TMTT--NDTKDVAGTVEEVMRIADQGADLVRITVQGK---------------READACFEIKNSLVQKN 159 (640)
Q Consensus 98 IGG~~PI~VQ-SMt~--t~T~Dv~atv~Qi~rl~~aGceiVRvtvp~~---------------~~A~~l~~I~~~L~~~g 159 (640)
+|.+.||.|= |... ....+.+.+++-+++|.++|+|+|=++..+. ...+.++.|++.
T Consensus 205 ~g~d~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~----- 279 (327)
T cd02803 205 VGPDFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKA----- 279 (327)
T ss_pred cCCCceEEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHH-----
Confidence 4556666552 1111 1224678889999999999999997654322 223556667774
Q ss_pred CCcceeeccCCC-HHHHHHHhhh--cCceeeCCCCCCchh
Q 006566 160 YNIPLVADIHFA-PSVALRVAEC--FDKIRVNPGNFADRR 196 (640)
Q Consensus 160 ~~iPLVADIHF~-~~~Al~Aa~~--v~KVRINPGN~~d~~ 196 (640)
+++|+++.--+. +.-|.++++. +|-|=+-=+-+.+++
T Consensus 280 ~~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~igR~~ladP~ 319 (327)
T cd02803 280 VKIPVIAVGGIRDPEVAEEILAEGKADLVALGRALLADPD 319 (327)
T ss_pred CCCCEEEeCCCCCHHHHHHHHHCCCCCeeeecHHHHhCcc
Confidence 689999988776 8889888876 888877666666644
No 319
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=52.71 E-value=71 Score=34.25 Aligned_cols=54 Identities=17% Similarity=0.246 Sum_probs=43.0
Q ss_pred CCCcceeeccC-CCHHHHHHHhh--hcCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeE
Q 006566 159 NYNIPLVADIH-FAPSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAV 234 (640)
Q Consensus 159 g~~iPLVADIH-F~~~~Al~Aa~--~v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aI 234 (640)
.+++|+.+|=+ +++.-+...++ +++-|.+.|...|.-.+ ...+.+.|.++|+++
T Consensus 220 ~~~~pIa~gE~~~~~~~~~~~i~~~a~d~i~~d~~~~GGit~----------------------~~~i~~~A~~~g~~~ 276 (341)
T cd03327 220 ATGIPISTGEHEYTVYGFKRLLEGRAVDILQPDVNWVGGITE----------------------LKKIAALAEAYGVPV 276 (341)
T ss_pred cCCCCeEeccCccCHHHHHHHHHcCCCCEEecCccccCCHHH----------------------HHHHHHHHHHcCCee
Confidence 37899999955 46666666655 49999999999987442 788999999999986
No 320
>cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway. In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP.
Probab=52.51 E-value=2.2e+02 Score=28.72 Aligned_cols=139 Identities=14% Similarity=0.189 Sum_probs=83.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCCCcceeeccCCC--HHH----HHHHhhh-cCce
Q 006566 113 DTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFA--PSV----ALRVAEC-FDKI 185 (640)
Q Consensus 113 ~T~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~--~~~----Al~Aa~~-v~KV 185 (640)
|..|.+.+.+=++++.+. ..++-+-.|=..+ ...++.+.|++.+ .|+++|.-|. |+- +..+.+. +|-+
T Consensus 6 D~~~~~~a~~i~~~~~~~-v~~iKvg~~l~~~--~g~~~i~~l~~~~--~~i~~DlK~~DIg~tv~~~~~~~~~~gad~~ 80 (216)
T cd04725 6 DPPDEEFALALIDALGPY-VCAVKVGLELFEA--AGPEIVKELRELG--FLVFLDLKLGDIPNTVAAAAEALLGLGADAV 80 (216)
T ss_pred CCCCHHHHHHHHHhcCCc-ccEEEECHHHHHh--cCHHHHHHHHHCC--CcEEEEeecCchHHHHHHHHHHHHhcCCCEE
Confidence 455666666655555544 3466665554443 4455666677777 8999998776 542 2334555 8889
Q ss_pred eeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeC-CCCCcHhHHHHhCCChHHHHHHHHH
Q 006566 186 RVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTN-HGSLSDRIMSYYGDSPRGMVESAFE 264 (640)
Q Consensus 186 RINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvN-hGSLs~ril~ryGdtp~gMVeSAle 264 (640)
=++| ++..+ .++++++.+++++.-+ +++- --|.+..-+.. |.. ...-+-.++
T Consensus 81 Tvh~--~~G~~----------------------~l~~~~~~~~~~~~~~-~~v~~lss~~~~~~q~-~~~-~~~~~~~~~ 133 (216)
T cd04725 81 TVHP--YGGSD----------------------MLKAALEAAEEKGKGL-FAVTVLSSPGALDLQE-GIP-GSLEDLVER 133 (216)
T ss_pred EECC--cCCHH----------------------HHHHHHHHHhccCCeE-EEEEcCCCCCHHHHHh-hhc-CCHHHHHHH
Confidence 9998 44422 3888999998876433 2322 11343333333 311 134456777
Q ss_pred HHHHHHHCCCCcEEEEEEe
Q 006566 265 FARICRKLDFHNFLFSMKA 283 (640)
Q Consensus 265 ~~~i~e~~~F~diviSmKs 283 (640)
.++++++.|-.-+|.|-.-
T Consensus 134 ~~~~a~~~g~~G~V~~~~~ 152 (216)
T cd04725 134 LAKLAREAGVDGVVCGATE 152 (216)
T ss_pred HHHHHHHHCCCEEEECCcc
Confidence 8889999997777777433
No 321
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=52.47 E-value=1.1e+02 Score=33.11 Aligned_cols=50 Identities=16% Similarity=0.244 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEEeCCh
Q 006566 219 VFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNP 286 (640)
Q Consensus 219 ~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGdtp~gMVeSAle~~~i~e~~~F~diviSmKsSn~ 286 (640)
.|.++++.+|++|+.+.|=||.--|++++ ++.+.+.|+..+.||+.+.+.
T Consensus 78 ~~~~il~~~~~~g~~~~i~TNG~ll~~~~------------------~~~L~~~g~~~v~iSldg~~~ 127 (378)
T PRK05301 78 DLEELVAHARELGLYTNLITSGVGLTEAR------------------LAALKDAGLDHIQLSFQDSDP 127 (378)
T ss_pred hHHHHHHHHHHcCCcEEEECCCccCCHHH------------------HHHHHHcCCCEEEEEecCCCH
Confidence 36788999999998888888854455442 333455677777777777653
No 322
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=52.07 E-value=39 Score=39.75 Aligned_cols=74 Identities=16% Similarity=0.216 Sum_probs=52.7
Q ss_pred eccCCCCCCHHHHHHHHHHHHHcCCCEEEEe----cCCH-HHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHH----HH
Q 006566 108 TMTTNDTKDVAGTVEEVMRIADQGADLVRIT----VQGK-READACFEIKNSLVQKNYNIPLVADIHFAPSVAL----RV 178 (640)
Q Consensus 108 SMt~t~T~Dv~atv~Qi~rl~~aGceiVRvt----vp~~-~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al----~A 178 (640)
|.|..+..+.+--++.++++.++||+.|.|. .-.+ +..+-++.||+. +++|+-.-.|-+.-+|. +|
T Consensus 144 ~yt~sp~~t~e~~~~~ak~l~~~Gad~I~IkDtaG~l~P~~v~~lv~alk~~-----~~ipi~~H~Hnt~Gla~an~laA 218 (596)
T PRK14042 144 CYTTSPVHTLDNFLELGKKLAEMGCDSIAIKDMAGLLTPTVTVELYAGLKQA-----TGLPVHLHSHSTSGLASICHYEA 218 (596)
T ss_pred EecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCcccCCCHHHHHHHHHHHHhh-----cCCEEEEEeCCCCCcHHHHHHHH
Confidence 4566778999999999999999999988876 1222 233444555553 67999877787776664 67
Q ss_pred hhh-cCcee
Q 006566 179 AEC-FDKIR 186 (640)
Q Consensus 179 a~~-v~KVR 186 (640)
+++ ++-|=
T Consensus 219 ieaGad~iD 227 (596)
T PRK14042 219 VLAGCNHID 227 (596)
T ss_pred HHhCCCEEE
Confidence 777 76554
No 323
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=52.07 E-value=1.8e+02 Score=30.19 Aligned_cols=79 Identities=28% Similarity=0.342 Sum_probs=57.3
Q ss_pred cCCCCceEEEeccCCCCCCHHHHHHHHHHHHH-cCCCEEEEecCCHHHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHH
Q 006566 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIAD-QGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVAL 176 (640)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~rl~~-aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al 176 (640)
+|++.||.+|-+ ..|.+..++|.++|.+ .| +=|=|-+|--.+ .++.|++ |.++|+++-+= -=|++.=|+
T Consensus 51 i~~~~~vs~ev~----~~~~~~mi~eA~~l~~~~~-~nv~VKIP~T~~--Gl~Ai~~-L~~~Gi~vn~T--~ifs~~Qa~ 120 (222)
T PRK12656 51 IGDEASIHVQVV----AQDYEGILKDAHEIRRQCG-DDVYIKVPVTPA--GLAAIKT-LKAEGYHITAT--AIYTVFQGL 120 (222)
T ss_pred hCCCCcEEEEEE----ECCHHHHHHHHHHHHHHhC-CCEEEEeCCCHH--HHHHHHH-HHHCCCceEEe--eeCCHHHHH
Confidence 455789999997 5589999999999984 56 434456776554 5666653 66667665443 379999999
Q ss_pred HHhhh-cCcee
Q 006566 177 RVAEC-FDKIR 186 (640)
Q Consensus 177 ~Aa~~-v~KVR 186 (640)
.|++. ++-|-
T Consensus 121 ~Aa~aGa~yvs 131 (222)
T PRK12656 121 LAIEAGADYLA 131 (222)
T ss_pred HHHHCCCCEEe
Confidence 99997 76553
No 324
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=51.98 E-value=1e+02 Score=33.41 Aligned_cols=98 Identities=19% Similarity=0.342 Sum_probs=64.8
Q ss_pred HHHHhhhHhhHHHHHHHHHHcCC-eEEEeeCCCCCcHhHHH--------HhCCChHHHHHHHHHHHHHHHH-CC---CCc
Q 006566 210 QKELQHIEEVFSPLVEKCKKYGR-AVRIGTNHGSLSDRIMS--------YYGDSPRGMVESAFEFARICRK-LD---FHN 276 (640)
Q Consensus 210 ~~Ele~I~~~f~~lV~~~Ke~g~-aIRIGvNhGSLs~ril~--------ryGdtp~gMVeSAle~~~i~e~-~~---F~d 276 (640)
.+|++.|.+.|..=.+.|++.|- .|=|=.-||-|=..+++ +||.+.+.=..=++|-++-.++ .| -.+
T Consensus 136 ~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~ 215 (353)
T cd04735 136 HEEIEDIIDAFGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKD 215 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCC
Confidence 45677888889999999999887 56666667766555554 4886665544555555554433 34 257
Q ss_pred EEEEEEeCChh-----hHHHHHHHHHHHHHHcCCCc
Q 006566 277 FLFSMKASNPV-----VMVQAYRLLVAEMYVHGWDY 307 (640)
Q Consensus 277 iviSmKsSn~~-----~mV~AyRlL~~~m~~~g~dy 307 (640)
+.|.+|-|-.. ...+....+++.+++.|+||
T Consensus 216 ~~v~~R~s~~~~~~~g~~~ee~~~i~~~L~~~GvD~ 251 (353)
T cd04735 216 FILGYRFSPEEPEEPGIRMEDTLALVDKLADKGLDY 251 (353)
T ss_pred ceEEEEECcccccCCCCCHHHHHHHHHHHHHcCCCE
Confidence 78888877422 12455667778888888876
No 325
>PRK15000 peroxidase; Provisional
Probab=51.92 E-value=33 Score=34.27 Aligned_cols=68 Identities=9% Similarity=0.055 Sum_probs=44.5
Q ss_pred CceEEEeccC--C--CCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHH-HHHHhhcCCCCcceeeccC
Q 006566 102 HPIRVQTMTT--N--DTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFE-IKNSLVQKNYNIPLVADIH 169 (640)
Q Consensus 102 ~PI~VQSMt~--t--~T~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~A~~l~~-I~~~L~~~g~~iPLVADIH 169 (640)
+++.+=+--. | .+..+.+-.+-..++.+.||+++-|++.+....++..+ +++..--.+++.|+++|-.
T Consensus 35 k~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~ 107 (200)
T PRK15000 35 KTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVK 107 (200)
T ss_pred CEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCC
Confidence 5666555443 2 33444555556667788899999999999877666543 4553211246899999965
No 326
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=51.90 E-value=46 Score=34.99 Aligned_cols=64 Identities=22% Similarity=0.142 Sum_probs=46.9
Q ss_pred HHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhh-cCceee
Q 006566 120 TVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRV 187 (640)
Q Consensus 120 tv~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~-v~KVRI 187 (640)
|.+|..+..++|+|+|.+--.+. +.++++.+.+++. -++|++|.---++.=+.+.++. +|-|=+
T Consensus 190 t~eea~~A~~~gaD~I~ld~~~~---e~l~~~v~~i~~~-~~i~i~asGGIt~~ni~~~a~~Gad~Isv 254 (269)
T cd01568 190 TLEEAEEALEAGADIIMLDNMSP---EELKEAVKLLKGL-PRVLLEASGGITLENIRAYAETGVDVIST 254 (269)
T ss_pred CHHHHHHHHHcCCCEEEECCCCH---HHHHHHHHHhccC-CCeEEEEECCCCHHHHHHHHHcCCCEEEE
Confidence 46888888899999999976666 4445555554444 5799999998888777666666 776654
No 327
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=51.77 E-value=2.9e+02 Score=28.40 Aligned_cols=117 Identities=20% Similarity=0.237 Sum_probs=69.8
Q ss_pred CceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHH-HHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhh
Q 006566 102 HPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKRE-ADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAE 180 (640)
Q Consensus 102 ~PI~VQSMt~t~T~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~-A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~ 180 (640)
-|+-|.=|++. --..+..++++||++|=+-+-.... .+.|..||+ .|...=|.=-=+-.......-++
T Consensus 59 ~~~dvHLMv~~-------p~~~i~~~~~~gad~i~~H~Ea~~~~~~~l~~ik~----~g~k~GlalnP~Tp~~~i~~~l~ 127 (220)
T PRK08883 59 APIDVHLMVKP-------VDRIIPDFAKAGASMITFHVEASEHVDRTLQLIKE----HGCQAGVVLNPATPLHHLEYIMD 127 (220)
T ss_pred CCEEEEeccCC-------HHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHH----cCCcEEEEeCCCCCHHHHHHHHH
Confidence 46777778753 2345678899999998887664333 245555555 58765555444444444444455
Q ss_pred hcCcee---eCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHh
Q 006566 181 CFDKIR---VNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDR 246 (640)
Q Consensus 181 ~v~KVR---INPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~r 246 (640)
.+|.|= +|||-=|. +|... .++ +++++.+..+++|.-+.|-+ -|.++..
T Consensus 128 ~~D~vlvMtV~PGfgGq---~fi~~---------~le----kI~~l~~~~~~~~~~~~I~v-dGGI~~e 179 (220)
T PRK08883 128 KVDLILLMSVNPGFGGQ---SFIPH---------TLD----KLRAVRKMIDESGRDIRLEI-DGGVKVD 179 (220)
T ss_pred hCCeEEEEEecCCCCCc---eecHh---------HHH----HHHHHHHHHHhcCCCeeEEE-ECCCCHH
Confidence 566665 79987654 24322 223 34445555566777777877 5656543
No 328
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=51.66 E-value=2.1e+02 Score=29.46 Aligned_cols=145 Identities=19% Similarity=0.218 Sum_probs=83.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCCCcceeecc--CCCH-----H-----HHHHHhh
Q 006566 113 DTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADI--HFAP-----S-----VALRVAE 180 (640)
Q Consensus 113 ~T~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~iPLVADI--HF~~-----~-----~Al~Aa~ 180 (640)
.-.|++..++++ .+.|++-|=++ |+.-.. ..+ + .+.++||+.-+ +|.. . .+.+|++
T Consensus 34 ~~~~~~~~~~~a---~~~~~~~v~~~-p~~~~~--~~~----~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~al~ 101 (258)
T TIGR01949 34 GLVDIRKTVNEV---AEGGADAVLLH-KGIVRR--GHR----G--YGKDVGLIIHLSASTSLSPDPNDKRIVTTVEDAIR 101 (258)
T ss_pred CcCCHHHHHHHH---HhcCCCEEEeC-cchhhh--ccc----c--cCCCCcEEEEEcCCCCCCCCCCcceeeeeHHHHHH
Confidence 335666665554 45678877665 433222 111 1 14567788777 7754 1 2556777
Q ss_pred h-cC--ceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCC-ChH
Q 006566 181 C-FD--KIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGD-SPR 256 (640)
Q Consensus 181 ~-v~--KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGd-tp~ 256 (640)
. ++ .+|+|.|.-. . .+.+ +.+..+.+.|.++|+++-|-+. . .|. .+.
T Consensus 102 ~Ga~~v~~~~~~g~~~--~----------------~~~~-~~~~~i~~~~~~~g~~liv~~~----~------~Gvh~~~ 152 (258)
T TIGR01949 102 MGADAVSIHVNVGSDT--E----------------WEQI-RDLGMIAEICDDWGVPLLAMMY----P------RGPHIDD 152 (258)
T ss_pred CCCCEEEEEEecCCch--H----------------HHHH-HHHHHHHHHHHHcCCCEEEEEe----c------cCccccc
Confidence 6 65 7899988521 1 1222 3477888999999999987221 0 011 111
Q ss_pred HHHHHHHHH-HHHHHHCCCCcEEEEEEeCChhhHHHHHHHHHHHHHHcCCCcce
Q 006566 257 GMVESAFEF-ARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPL 309 (640)
Q Consensus 257 gMVeSAle~-~~i~e~~~F~diviSmKsSn~~~mV~AyRlL~~~m~~~g~dyPL 309 (640)
+-...+++ ++++.+.|-+=+.+|.+. -++..+.+++. ..-|+
T Consensus 153 -~~~~~~~~~~~~a~~~GADyikt~~~~-----~~~~l~~~~~~-----~~iPV 195 (258)
T TIGR01949 153 -RDPELVAHAARLGAELGADIVKTPYTG-----DIDSFRDVVKG-----CPAPV 195 (258)
T ss_pred -ccHHHHHHHHHHHHHHCCCEEeccCCC-----CHHHHHHHHHh-----CCCcE
Confidence 11122333 588888988888877441 35666666665 55666
No 329
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=51.43 E-value=81 Score=34.10 Aligned_cols=69 Identities=7% Similarity=0.038 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHhhcCCCCcceeeccC-CCHHHHHHHhh--hcCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhH
Q 006566 144 EADACFEIKNSLVQKNYNIPLVADIH-FAPSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVF 220 (640)
Q Consensus 144 ~A~~l~~I~~~L~~~g~~iPLVADIH-F~~~~Al~Aa~--~v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f 220 (640)
+.+.+.+++++ ..+.+|+.+|=+ |+..-+...++ ++|-|.+.+...|.-.+ .
T Consensus 221 d~~~~~~l~~~---~~~~iPIa~gE~~~~~~~~~~li~~~a~div~~d~~~~GGit~----------------------~ 275 (352)
T cd03328 221 DLAGLRLVRER---GPAGMDIAAGEYAYTLAYFRRLLEAHAVDVLQADVTRCGGVTG----------------------F 275 (352)
T ss_pred hHHHHHHHHhh---CCCCCCEEecccccCHHHHHHHHHcCCCCEEecCccccCCHHH----------------------H
Confidence 44555555552 016699999976 47777777666 59999999999987432 7
Q ss_pred HHHHHHHHHcCCeEEEe
Q 006566 221 SPLVEKCKKYGRAVRIG 237 (640)
Q Consensus 221 ~~lV~~~Ke~g~aIRIG 237 (640)
..+.+.|+.+|+++=++
T Consensus 276 ~~ia~~A~a~gi~~~~h 292 (352)
T cd03328 276 LQAAALAAAHHVDLSAH 292 (352)
T ss_pred HHHHHHHHHcCCeeccC
Confidence 78999999999998554
No 330
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=51.30 E-value=4e+02 Score=30.01 Aligned_cols=145 Identities=14% Similarity=0.184 Sum_probs=83.3
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCCHH-------------HHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhh
Q 006566 114 TKDVAGTVEEVMRIADQGADLVRITVQGKR-------------EADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAE 180 (640)
Q Consensus 114 T~Dv~atv~Qi~rl~~aGceiVRvtvp~~~-------------~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~ 180 (640)
.+.++..+++++.|.+.|..-|.++-++.- -++-|..|.+. ...+ .
T Consensus 180 sr~~e~Vv~Ei~~l~~~G~~ei~l~g~~~~~y~~~~~~~~~~~~~~Ll~~l~~~-----~~~~----------------~ 238 (455)
T PRK14335 180 SRDLDAILQEIDVLSEKGVREITLLGQNVNSYRGRDREGNIVTFPQLLRHIVRR-----AEVT----------------D 238 (455)
T ss_pred cCCHHHHHHHHHHHHHCCCeEEEEEeecccccccccccCCccCHHHHHHHHHHh-----hccc----------------C
Confidence 467899999999999999877788765442 12222222211 0000 0
Q ss_pred hcCcee---eCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHc---CCeEEEeeCCCCCcHhHHHHhCCC
Q 006566 181 CFDKIR---VNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKY---GRAVRIGTNHGSLSDRIMSYYGDS 254 (640)
Q Consensus 181 ~v~KVR---INPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~---g~aIRIGvNhGSLs~ril~ryGdt 254 (640)
.+.-+| +||..+.+ ++++..++. -.-+=||+-|| |+++|.+.+-.
T Consensus 239 ~i~~ir~~s~~p~~i~~---------------------------ell~~m~~~~~gc~~l~iglQSg--sd~vLk~m~R~ 289 (455)
T PRK14335 239 QIRWIRFMSSHPKDLSD---------------------------DLIATIAQESRLCRLVHLPVQHG--SNGVLKRMNRS 289 (455)
T ss_pred CceEEEEeecCcccCCH---------------------------HHHHHHHhCCCCCCeEEEccCcC--CHHHHHHcCCC
Confidence 022244 57766532 244555553 24566788777 58899887631
Q ss_pred hHHHHHHHHHHHHHHHHC--CCCcEEEEEEeCChhhHHHHHHHHHHHHHHcCCCcceEEE
Q 006566 255 PRGMVESAFEFARICRKL--DFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLG 312 (640)
Q Consensus 255 p~gMVeSAle~~~i~e~~--~F~diviSmKsSn~~~mV~AyRlL~~~m~~~g~dyPLHLG 312 (640)
- -++..++.++.+++. |+ .+..++=.=-|-.+.+.++...+.+.+.+.++ +|+-
T Consensus 290 ~--t~e~~~~~v~~ir~~~pgi-~i~~d~IvGfPgET~edf~~Tl~~i~~l~~~~-~~~~ 345 (455)
T PRK14335 290 Y--TREHYLSLVGKLKASIPNV-ALSTDILIGFPGETEEDFEQTLDLMREVEFDS-AFMY 345 (455)
T ss_pred C--CHHHHHHHHHHHHHhCCCC-EEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCe-EEEE
Confidence 1 146777778888877 55 22222222235567777777777777777665 3443
No 331
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=51.27 E-value=1.8e+02 Score=29.93 Aligned_cols=81 Identities=19% Similarity=0.282 Sum_probs=60.4
Q ss_pred CceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhh
Q 006566 102 HPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC 181 (640)
Q Consensus 102 ~PI~VQSMt~t~T~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~ 181 (640)
.||.+|-+ ..|.++.++|.++|.+.+-. +-|-+|--. +.++.|++ |.++|+++.+=+ =|+..=|+.|++.
T Consensus 52 g~vs~qv~----~~~~~~mi~~a~~l~~~~~~-i~iKIP~T~--~Gl~A~~~-L~~~Gi~v~~T~--vfs~~Qa~~Aa~a 121 (213)
T TIGR00875 52 GPVSAETI----SLDAEGMVEEAKELAKLAPN-IVVKIPMTS--EGLKAVKI-LKKEGIKTNVTL--VFSAAQALLAAKA 121 (213)
T ss_pred CcEEEEEe----eCCHHHHHHHHHHHHHhCCC-eEEEeCCCH--HHHHHHHH-HHHCCCceeEEE--ecCHHHHHHHHHc
Confidence 48999995 45799999999999999865 668888766 34666664 777777666544 6899999999998
Q ss_pred -cCceeeCCCCC
Q 006566 182 -FDKIRVNPGNF 192 (640)
Q Consensus 182 -v~KVRINPGN~ 192 (640)
++=|-..=|=+
T Consensus 122 Ga~yispyvgRi 133 (213)
T TIGR00875 122 GATYVSPFVGRL 133 (213)
T ss_pred CCCEEEeecchH
Confidence 66554443433
No 332
>PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=51.26 E-value=68 Score=34.75 Aligned_cols=104 Identities=22% Similarity=0.299 Sum_probs=56.9
Q ss_pred CHHHHHHHHHHHHHcCCCE-EEEecCCHHHH--H---------HHHHHHHHhh----cCC----CCcceeeccCCCHHHH
Q 006566 116 DVAGTVEEVMRIADQGADL-VRITVQGKREA--D---------ACFEIKNSLV----QKN----YNIPLVADIHFAPSVA 175 (640)
Q Consensus 116 Dv~atv~Qi~rl~~aGcei-VRvtvp~~~~A--~---------~l~~I~~~L~----~~g----~~iPLVADIHF~~~~A 175 (640)
+|.+.+..+.+|.++|-++ +-|+..+..+. + .+.+|.+.++ +.+ +..|+|.+++-+..-|
T Consensus 190 sTnG~~~~i~~L~~~~l~~~LaiSL~a~~~e~r~~i~p~~~~~~l~~Il~~l~~~~~~~~~~v~i~yvlI~g~NDs~ed~ 269 (343)
T PRK14469 190 STVGIPEKIIQLAEEGLDVKLALSLHAPTNFKRDQIVPLNKKYSIEEIINAVKIYQKKTGNRVTIEYILIKGFNDEIEDA 269 (343)
T ss_pred ECCCChHHHHHHHhhCCCcEEEEEeCCCCHHHHHhhcCcCCCCCHHHHHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHH
Confidence 3344578999999999985 66665444332 1 2334444332 223 3468999999886555
Q ss_pred HHHhhhc-------CceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEe
Q 006566 176 LRVAECF-------DKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIG 237 (640)
Q Consensus 176 l~Aa~~v-------~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIG 237 (640)
..-++.+ .=|..||- .. .|.... ++.+..+.+..+++|+.+.|-
T Consensus 270 ~~La~llk~~~~~VnLIpynp~---~~--~~~~ps-------------~e~l~~f~~~l~~~gi~vtvr 320 (343)
T PRK14469 270 KKLAELLKGLKVFVNLIPVNPT---VP--GLEKPS-------------RERIERFKEILLKNGIEAEIR 320 (343)
T ss_pred HHHHHHHhccCcEEEEEecCCC---Cc--cCCCCC-------------HHHHHHHHHHHHHCCCeEEEe
Confidence 4444332 22344541 11 121111 233455666677788887764
No 333
>PLN02428 lipoic acid synthase
Probab=51.07 E-value=3.7e+02 Score=29.86 Aligned_cols=138 Identities=18% Similarity=0.132 Sum_probs=81.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCC-----HHHHHHHHHHHHHhhcCCCCcc---eeeccCCCHHHHHHHhhh-cCce
Q 006566 115 KDVAGTVEEVMRIADQGADLVRITVQG-----KREADACFEIKNSLVQKNYNIP---LVADIHFAPSVALRVAEC-FDKI 185 (640)
Q Consensus 115 ~Dv~atv~Qi~rl~~aGceiVRvtvp~-----~~~A~~l~~I~~~L~~~g~~iP---LVADIHF~~~~Al~Aa~~-v~KV 185 (640)
.|.+.-++.+..+.+.|...|=||.++ ...++.+.++.+.|++..-.+- |+.|..-++.+...-.++ ++-+
T Consensus 130 ~d~~Ep~~vA~~v~~~Glk~vvltSg~rddl~D~ga~~~~elir~Ir~~~P~i~Ie~L~pdf~~d~elL~~L~eAG~d~i 209 (349)
T PLN02428 130 PDPDEPENVAEAIASWGVDYVVLTSVDRDDLPDGGSGHFAETVRRLKQLKPEILVEALVPDFRGDLGAVETVATSGLDVF 209 (349)
T ss_pred CChhhHHHHHHHHHHcCCCEEEEEEcCCCCCCcccHHHHHHHHHHHHHhCCCcEEEEeCccccCCHHHHHHHHHcCCCEE
Confidence 466777777788888999988777553 3455566666666665441111 344655566655554454 5443
Q ss_pred eeCCCCCCchhhhccccccchHHHHHHHh---hhHhhHHHHHHHHHHc--CCeEEEeeCCCCCcHhHHHHhCCChHHHHH
Q 006566 186 RVNPGNFADRRAQFEQLEYTDDEYQKELQ---HIEEVFSPLVEKCKKY--GRAVRIGTNHGSLSDRIMSYYGDSPRGMVE 260 (640)
Q Consensus 186 RINPGN~~d~~k~F~~~eYtdeeY~~Ele---~I~~~f~~lV~~~Ke~--g~aIRIGvNhGSLs~ril~ryGdtp~gMVe 260 (640)
++|+-..+ ++...+- .=.+....+++.+|+. |+.++-|.=-| +|.|.+-
T Consensus 210 ---~hnlETv~-----------rL~~~Ir~~~~sye~~Le~L~~ak~~~pGi~tkSg~MvG---------LGET~Ed--- 263 (349)
T PLN02428 210 ---AHNIETVE-----------RLQRIVRDPRAGYKQSLDVLKHAKESKPGLLTKTSIMLG---------LGETDEE--- 263 (349)
T ss_pred ---ccCccCcH-----------HHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEe---------cCCCHHH---
Confidence 34432211 2222221 1134567788889998 88777665222 2567744
Q ss_pred HHHHHHHHHHHCCCCcEEE
Q 006566 261 SAFEFARICRKLDFHNFLF 279 (640)
Q Consensus 261 SAle~~~i~e~~~F~divi 279 (640)
..+.++.++++|++-+-|
T Consensus 264 -v~e~l~~Lrelgvd~vti 281 (349)
T PLN02428 264 -VVQTMEDLRAAGVDVVTF 281 (349)
T ss_pred -HHHHHHHHHHcCCCEEee
Confidence 456778889999865555
No 334
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=50.98 E-value=2.3e+02 Score=31.99 Aligned_cols=137 Identities=16% Similarity=0.277 Sum_probs=81.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHH----HHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhhcCceee-
Q 006566 113 DTKDVAGTVEEVMRIADQGADLVRITVQGKREA----DACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRV- 187 (640)
Q Consensus 113 ~T~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~A----~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~v~KVRI- 187 (640)
-.++++.-+++++.|.+.|..-|.++-++.-.- ..|.++-+.|.+ + .....||+
T Consensus 181 rsr~~e~Iv~Ei~~l~~~G~kei~l~~~~~~~y~~~~~~l~~Ll~~l~~----~-----------------~~~~~ir~~ 239 (449)
T PRK14332 181 RSRDPKSIVREIQDLQEKGIRQVTLLGQNVNSYKEQSTDFAGLIQMLLD----E-----------------TTIERIRFT 239 (449)
T ss_pred ccCCHHHHHHHHHHHHHCCCeEEEEecccCCcccCCcccHHHHHHHHhc----C-----------------CCcceEEEE
Confidence 357789999999999999999998886655221 122222221110 0 01223442
Q ss_pred --CCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcC---CeEEEeeCCCCCcHhHHHHhCC--ChHHHHH
Q 006566 188 --NPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYG---RAVRIGTNHGSLSDRIMSYYGD--SPRGMVE 260 (640)
Q Consensus 188 --NPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g---~aIRIGvNhGSLs~ril~ryGd--tp~gMVe 260 (640)
||-.+- .++++..++.+ .-+=||+-|| |+++|++++- |. +
T Consensus 240 ~~~p~~~~---------------------------~ell~~m~~~~~~~~~l~lgvQSg--sd~vLk~m~R~~t~----~ 286 (449)
T PRK14332 240 SPHPKDFP---------------------------DHLLSLMAKNPRFCPNIHLPLQAG--NTRVLEEMKRSYSK----E 286 (449)
T ss_pred CCCcccCC---------------------------HHHHHHHHhCCCccceEEECCCcC--CHHHHHhhCCCCCH----H
Confidence 443331 12556666655 3577788776 5899999873 43 4
Q ss_pred HHHHHHHHHHHC--CC---CcEEEEEEeCChhhHHHHHHHHHHHHHHcCCCc
Q 006566 261 SAFEFARICRKL--DF---HNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDY 307 (640)
Q Consensus 261 SAle~~~i~e~~--~F---~diviSmKsSn~~~mV~AyRlL~~~m~~~g~dy 307 (640)
...+.++.+++. |+ .++++-. |-.+-+.++...+.+.+.+.++
T Consensus 287 ~~~~~i~~lr~~~p~i~i~td~IvGf----PgET~edf~~tl~~v~~l~~~~ 334 (449)
T PRK14332 287 EFLDVVKEIRNIVPDVGITTDIIVGF----PNETEEEFEDTLAVVREVQFDM 334 (449)
T ss_pred HHHHHHHHHHHhCCCCEEEEEEEeeC----CCCCHHHHHHHHHHHHhCCCCE
Confidence 555666667765 22 2344433 4566777777777777777664
No 335
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=50.85 E-value=3.5e+02 Score=29.21 Aligned_cols=137 Identities=8% Similarity=0.036 Sum_probs=67.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEe--cCCHHHHHHHHHHHHHhhcCCCCcceeecc-CCCHHHHHHHhhh-cCceeeCCC
Q 006566 115 KDVAGTVEEVMRIADQGADLVRIT--VQGKREADACFEIKNSLVQKNYNIPLVADI-HFAPSVALRVAEC-FDKIRVNPG 190 (640)
Q Consensus 115 ~Dv~atv~Qi~rl~~aGceiVRvt--vp~~~~A~~l~~I~~~L~~~g~~iPLVADI-HF~~~~Al~Aa~~-v~KVRINPG 190 (640)
++++.-.+-+..+.+.|+..|-++ =|.+. ..+.+|.+.++++|+.+=+..-- +++.+.+..-.+. ++.|.|---
T Consensus 46 ~~~e~~~~ii~~~~~~g~~~v~~~GGEPll~--~~~~~il~~~~~~g~~~~i~TNG~ll~~~~~~~L~~~g~~~v~iSld 123 (378)
T PRK05301 46 LSTEEWIRVLREARALGALQLHFSGGEPLLR--KDLEELVAHARELGLYTNLITSGVGLTEARLAALKDAGLDHIQLSFQ 123 (378)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEECCccCCc--hhHHHHHHHHHHcCCcEEEECCCccCCHHHHHHHHHcCCCEEEEEec
Confidence 344555555566677888777776 22221 22445555566667654444443 3555555444444 555554311
Q ss_pred CCCchhhhccccccchHHHHHHHhh---hHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCCChHHHHHHHHHHHH
Q 006566 191 NFADRRAQFEQLEYTDDEYQKELQH---IEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFAR 267 (640)
Q Consensus 191 N~~d~~k~F~~~eYtdeeY~~Ele~---I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGdtp~gMVeSAle~~~ 267 (640)
- +++|.|. .+.. --+++..-++.++++|+.+.|-+. ++. .-++...++++
T Consensus 124 g------------~~~e~~d-~irg~~g~f~~~~~~i~~l~~~g~~v~i~~v---v~~-----------~N~~~i~~~~~ 176 (378)
T PRK05301 124 D------------SDPELND-RLAGTKGAFAKKLAVARLVKAHGYPLTLNAV---IHR-----------HNIDQIPRIIE 176 (378)
T ss_pred C------------CCHHHHH-HHcCCCchHHHHHHHHHHHHHCCCceEEEEE---eec-----------CCHHHHHHHHH
Confidence 0 1111122 1111 123344456677777766544331 111 11233456677
Q ss_pred HHHHCCCCcEEEE
Q 006566 268 ICRKLDFHNFLFS 280 (640)
Q Consensus 268 i~e~~~F~diviS 280 (640)
++.++|.+.+.++
T Consensus 177 ~~~~lgv~~i~~~ 189 (378)
T PRK05301 177 LAVELGADRLELA 189 (378)
T ss_pred HHHHcCCCEEEEe
Confidence 7778887766654
No 336
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=50.66 E-value=43 Score=38.32 Aligned_cols=81 Identities=22% Similarity=0.343 Sum_probs=54.4
Q ss_pred eccCCCCCCHHHHHHHHHHHHHcCCCEEEEe-cCCHHHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHH----HHhhh-
Q 006566 108 TMTTNDTKDVAGTVEEVMRIADQGADLVRIT-VQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVAL----RVAEC- 181 (640)
Q Consensus 108 SMt~t~T~Dv~atv~Qi~rl~~aGceiVRvt-vp~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al----~Aa~~- 181 (640)
|.|.++-.+++-.++.++++.++||+.|.|. +-+.-.-+...++.+.|++ ..++|+-.--|-+.-+|. +|+++
T Consensus 153 ~yt~sp~~t~~y~~~~a~~l~~~Gad~I~IkDtaG~l~P~~v~~Lv~alk~-~~~~pi~~H~Hnt~GlA~An~laAieAG 231 (468)
T PRK12581 153 AYTTSPVHTLNYYLSLVKELVEMGADSICIKDMAGILTPKAAKELVSGIKA-MTNLPLIVHTHATSGISQMTYLAAVEAG 231 (468)
T ss_pred EEEeCCcCcHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHh-ccCCeEEEEeCCCCccHHHHHHHHHHcC
Confidence 4555666789999999999999999988886 2222222333334444433 467999777777776665 67777
Q ss_pred cCcee--eCC
Q 006566 182 FDKIR--VNP 189 (640)
Q Consensus 182 v~KVR--INP 189 (640)
++-|= |||
T Consensus 232 ad~vD~ai~g 241 (468)
T PRK12581 232 ADRIDTALSP 241 (468)
T ss_pred CCEEEeeccc
Confidence 76654 554
No 337
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=50.61 E-value=39 Score=36.16 Aligned_cols=90 Identities=20% Similarity=0.206 Sum_probs=63.7
Q ss_pred CCCceEEEecc--CCCCCCHHHHHHHHHHH---------------------HHcCCCEEEE------ecCCHHHHHHHHH
Q 006566 100 SEHPIRVQTMT--TNDTKDVAGTVEEVMRI---------------------ADQGADLVRI------TVQGKREADACFE 150 (640)
Q Consensus 100 G~~PI~VQSMt--~t~T~Dv~atv~Qi~rl---------------------~~aGceiVRv------tvp~~~~A~~l~~ 150 (640)
+.+=|.+.=.- .|---|..+|++-.+.| +++||..|+- +=++...-.+|+-
T Consensus 104 ~~~wIKLEVi~D~~~LlPD~~etl~Aae~Lv~eGF~VlPY~~~D~v~a~rLed~Gc~aVMPlgsPIGSg~Gl~n~~~l~~ 183 (267)
T CHL00162 104 DNNFVKLEVISDPKYLLPDPIGTLKAAEFLVKKGFTVLPYINADPMLAKHLEDIGCATVMPLGSPIGSGQGLQNLLNLQI 183 (267)
T ss_pred CCCeEEEEEeCCCcccCCChHHHHHHHHHHHHCCCEEeecCCCCHHHHHHHHHcCCeEEeeccCcccCCCCCCCHHHHHH
Confidence 45566666554 34447888888876555 5555555553 2345566677778
Q ss_pred HHHHhhcCCCCcceeeccCCC-HHHHHHHhhh-cCceeeCCCCCCc
Q 006566 151 IKNSLVQKNYNIPLVADIHFA-PSVALRVAEC-FDKIRVNPGNFAD 194 (640)
Q Consensus 151 I~~~L~~~g~~iPLVADIHF~-~~~Al~Aa~~-v~KVRINPGN~~d 194 (640)
|++ ..++|+|-|-=-. |.=|-.|+|. +|.|=+|-|=...
T Consensus 184 i~e-----~~~vpVivdAGIgt~sDa~~AmElGaDgVL~nSaIakA 224 (267)
T CHL00162 184 IIE-----NAKIPVIIDAGIGTPSEASQAMELGASGVLLNTAVAQA 224 (267)
T ss_pred HHH-----cCCCcEEEeCCcCCHHHHHHHHHcCCCEEeecceeecC
Confidence 888 4789999995554 8888899999 9999999987744
No 338
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=50.61 E-value=99 Score=33.01 Aligned_cols=52 Identities=12% Similarity=0.137 Sum_probs=36.1
Q ss_pred hhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEEeCChh
Q 006566 218 EVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPV 287 (640)
Q Consensus 218 ~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGdtp~gMVeSAle~~~i~e~~~F~diviSmKsSn~~ 287 (640)
..|.++++.+|++|..+-|=||.--|+++ .++.+.+.|++.|-||+.+.+..
T Consensus 68 ~~~~~ii~~~~~~g~~~~l~TNG~ll~~e------------------~~~~L~~~g~~~v~iSldg~~~e 119 (358)
T TIGR02109 68 PDLVELVAHARRLGLYTNLITSGVGLTEA------------------RLDALADAGLDHVQLSFQGVDEA 119 (358)
T ss_pred ccHHHHHHHHHHcCCeEEEEeCCccCCHH------------------HHHHHHhCCCCEEEEeCcCCCHH
Confidence 34778999999999888887874334433 34445567777777888777643
No 339
>PRK01362 putative translaldolase; Provisional
Probab=50.48 E-value=31 Score=35.40 Aligned_cols=92 Identities=15% Similarity=0.167 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHcCCCEE-----EEecCCHHHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhh-cCceeeCCCCC
Q 006566 119 GTVEEVMRIADQGADLV-----RITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGNF 192 (640)
Q Consensus 119 atv~Qi~rl~~aGceiV-----Rvtvp~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~-v~KVRINPGN~ 192 (640)
-+++|....++|||++| |+.-.+..-.+.+++|.+-+++.|+++=++|=--=++.-..+++.. ++-|=|.|--+
T Consensus 110 fs~~Qa~~Aa~aGa~yispyvgRi~d~g~dg~~~i~~~~~~~~~~~~~tkilaAS~r~~~~v~~~~~~G~d~iTi~~~vl 189 (214)
T PRK01362 110 FSANQALLAAKAGATYVSPFVGRLDDIGTDGMELIEDIREIYDNYGFDTEIIAASVRHPMHVLEAALAGADIATIPYKVI 189 (214)
T ss_pred cCHHHHHHHHhcCCcEEEeecchHhhcCCCHHHHHHHHHHHHHHcCCCcEEEEeecCCHHHHHHHHHcCCCEEecCHHHH
Confidence 46889999999999998 5555566677888999998889999988888777789888898888 99999998766
Q ss_pred CchhhhccccccchHH---HHHHHh
Q 006566 193 ADRRAQFEQLEYTDDE---YQKELQ 214 (640)
Q Consensus 193 ~d~~k~F~~~eYtdee---Y~~Ele 214 (640)
.. +-...||++. |.+..+
T Consensus 190 ~~----l~~~p~t~~~~~~F~~dw~ 210 (214)
T PRK01362 190 KQ----LFKHPLTDKGLEKFLADWE 210 (214)
T ss_pred HH----HHcCCchHHHHHHHHHHHH
Confidence 43 4445666543 544433
No 340
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=50.29 E-value=94 Score=30.88 Aligned_cols=89 Identities=12% Similarity=0.060 Sum_probs=61.9
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhh--cCCCCcceeeccCCCHHHHHHHhhh-cCceeeCCCC
Q 006566 115 KDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLV--QKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGN 191 (640)
Q Consensus 115 ~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~--~~g~~iPLVADIHF~~~~Al~Aa~~-v~KVRINPGN 191 (640)
.|.+..++.++.+.++|+.+|-++..+....+.++.+++... ..|..+. |+..-+..|++. ++-|=+ |.
T Consensus 21 ~~~~~~~~~~~~~~~~Gv~~vqlr~k~~~~~e~~~~~~~~~~~~~~g~gtv------l~~d~~~~A~~~gAdgv~~--p~ 92 (187)
T PRK07455 21 PDLELGLQMAEAVAAGGMRLIEITWNSDQPAELISQLREKLPECIIGTGTI------LTLEDLEEAIAAGAQFCFT--PH 92 (187)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHhCCCcEEeEEEE------EcHHHHHHHHHcCCCEEEC--CC
Confidence 478899999999999999999999998888888888887411 1112222 344566666665 444421 12
Q ss_pred CCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEee
Q 006566 192 FADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT 238 (640)
Q Consensus 192 ~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGv 238 (640)
+ -.++++.|++++++.-||+
T Consensus 93 ~---------------------------~~~~~~~~~~~~~~~i~G~ 112 (187)
T PRK07455 93 V---------------------------DPELIEAAVAQDIPIIPGA 112 (187)
T ss_pred C---------------------------CHHHHHHHHHcCCCEEcCc
Confidence 2 1356789999999888885
No 341
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=50.26 E-value=1.6e+02 Score=32.19 Aligned_cols=69 Identities=19% Similarity=0.315 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHcC--CCEEEEec---CCHHHHHHHHHHHHHhhcCCCCcc-eeec-cCCCHHHHHHHhhh-cCceeeC-
Q 006566 118 AGTVEEVMRIADQG--ADLVRITV---QGKREADACFEIKNSLVQKNYNIP-LVAD-IHFAPSVALRVAEC-FDKIRVN- 188 (640)
Q Consensus 118 ~atv~Qi~rl~~aG--ceiVRvtv---p~~~~A~~l~~I~~~L~~~g~~iP-LVAD-IHF~~~~Al~Aa~~-v~KVRIN- 188 (640)
+...+.+..|.++| +|+|=+-+ .+..-.+.++.||+. ++.| +|+= + -++..|..++++ ++.|++-
T Consensus 93 ~e~~~r~~~lv~a~~~~d~i~~D~ahg~s~~~~~~i~~i~~~-----~p~~~vi~GnV-~t~e~a~~l~~aGad~I~V~~ 166 (321)
T TIGR01306 93 ACEYEFVTQLAEEALTPEYITIDIAHGHSNSVINMIKHIKTH-----LPDSFVIAGNV-GTPEAVRELENAGADATKVGI 166 (321)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEeCccCchHHHHHHHHHHHHh-----CCCCEEEEecC-CCHHHHHHHHHcCcCEEEECC
Confidence 56678999999999 79877765 235666778888885 6767 5555 5 589999999999 9999965
Q ss_pred -CCCC
Q 006566 189 -PGNF 192 (640)
Q Consensus 189 -PGN~ 192 (640)
||-+
T Consensus 167 G~G~~ 171 (321)
T TIGR01306 167 GPGKV 171 (321)
T ss_pred CCCcc
Confidence 7765
No 342
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=50.20 E-value=22 Score=38.84 Aligned_cols=49 Identities=18% Similarity=0.295 Sum_probs=36.4
Q ss_pred CCHHHHHH----HHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCC--Ccceee
Q 006566 115 KDVAGTVE----EVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNY--NIPLVA 166 (640)
Q Consensus 115 ~Dv~atv~----Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~--~iPLVA 166 (640)
-|-++|++ |....++||||+| +|+-===--.+.||+.|.+.|+ ++|+++
T Consensus 134 vdND~Tl~~L~k~Avs~A~AGADiV---APSdMMDGrV~aIR~aLD~~G~~~~v~ImS 188 (320)
T cd04824 134 INNEASVKRLAEVALAYAKAGAHIV---APSDMMDGRVRAIKQALIQAGLGNKVSVMS 188 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHhCCCEE---ecccccccHHHHHHHHHHHCCCccCCeeee
Confidence 45566655 5566799999998 4443333457889999999999 799987
No 343
>PLN02591 tryptophan synthase
Probab=50.07 E-value=1.6e+02 Score=31.00 Aligned_cols=98 Identities=19% Similarity=0.241 Sum_probs=66.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCH---------HHH--HH---------HHHHHHHhhcCCCCcceeeccCCCHHH
Q 006566 115 KDVAGTVEEVMRIADQGADLVRITVQGK---------REA--DA---------CFEIKNSLVQKNYNIPLVADIHFAPSV 174 (640)
Q Consensus 115 ~Dv~atv~Qi~rl~~aGceiVRvtvp~~---------~~A--~~---------l~~I~~~L~~~g~~iPLVADIHF~~~~ 174 (640)
-|.+.|++-++.|.++|||++=+-+|-- ++| ++ +-++.+++|+ ..++|+|-=.-+||-.
T Consensus 13 P~~e~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~-~~~~p~ilm~Y~N~i~ 91 (250)
T PLN02591 13 PDLDTTAEALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAP-QLSCPIVLFTYYNPIL 91 (250)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhc-CCCCCEEEEecccHHH
Confidence 4889999999999999999999998743 111 11 2233445663 4889988666666533
Q ss_pred -------HHHHhhh-cCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEee
Q 006566 175 -------ALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT 238 (640)
Q Consensus 175 -------Al~Aa~~-v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGv 238 (640)
...|.++ ++.|=|+.=- | |...++.+.||++|+..=.=+
T Consensus 92 ~~G~~~F~~~~~~aGv~GviipDLP-------~------------------ee~~~~~~~~~~~gl~~I~lv 138 (250)
T PLN02591 92 KRGIDKFMATIKEAGVHGLVVPDLP-------L------------------EETEALRAEAAKNGIELVLLT 138 (250)
T ss_pred HhHHHHHHHHHHHcCCCEEEeCCCC-------H------------------HHHHHHHHHHHHcCCeEEEEe
Confidence 3355666 7777666211 1 235688999999998874444
No 344
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=49.75 E-value=3.8e+02 Score=29.54 Aligned_cols=141 Identities=12% Similarity=0.241 Sum_probs=80.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecCCHHH-------HHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhhcCce
Q 006566 113 DTKDVAGTVEEVMRIADQGADLVRITVQGKRE-------ADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKI 185 (640)
Q Consensus 113 ~T~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~-------A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~v~KV 185 (640)
..++.+..+++++.|.+.|..-|.++-++.-. ...+.++.+.|.+ +| .+..+
T Consensus 165 r~r~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~~d~~~~~~l~~Ll~~l~~----~~-----------------~~~~i 223 (414)
T TIGR01579 165 RSVPMEAILKQVKILVAKGYKEIVLTGVNLGSYGDDLKNGTSLAKLLEQILQ----IP-----------------GIKRI 223 (414)
T ss_pred ccCCHHHHHHHHHHHHHCCCceEEEeeEccchhccCCCCCCcHHHHHHHHhc----CC-----------------CCcEE
Confidence 35789999999999999999988887543311 1223333332221 11 01223
Q ss_pred ee---CCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCCChHHHHHHH
Q 006566 186 RV---NPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESA 262 (640)
Q Consensus 186 RI---NPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGdtp~gMVeSA 262 (640)
|+ +|.++-+ + +..++..+...-.-+=||+-|| |+++|.+.+-.. -++..
T Consensus 224 r~~~~~p~~~~~-e-----------------------ll~~m~~~~~~~~~l~lglESg--s~~vLk~m~R~~--~~~~~ 275 (414)
T TIGR01579 224 RLSSIDPEDIDE-E-----------------------LLEAIASEKRLCPHLHLSLQSG--SDRVLKRMRRKY--TRDDF 275 (414)
T ss_pred EEeCCChhhCCH-H-----------------------HHHHHHhcCccCCCeEECCCcC--ChHHHHhcCCCC--CHHHH
Confidence 43 4544421 1 3333333332334556788776 478888876321 13566
Q ss_pred HHHHHHHHH--CCCC---cEEEEEEeCChhhHHHHHHHHHHHHHHcCCC
Q 006566 263 FEFARICRK--LDFH---NFLFSMKASNPVVMVQAYRLLVAEMYVHGWD 306 (640)
Q Consensus 263 le~~~i~e~--~~F~---diviSmKsSn~~~mV~AyRlL~~~m~~~g~d 306 (640)
.+.++.+++ .|+. ++++-+ |-.+.+.++...+.+.+.+.+
T Consensus 276 ~~~v~~l~~~~~gi~i~~~~IvG~----PgET~ed~~~tl~~i~~~~~~ 320 (414)
T TIGR01579 276 LKLVNKLRSVRPDYAFGTDIIVGF----PGESEEDFQETLRMVKEIEFS 320 (414)
T ss_pred HHHHHHHHHhCCCCeeeeeEEEEC----CCCCHHHHHHHHHHHHhCCCC
Confidence 777778887 6663 445544 455666666666666666654
No 345
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=49.56 E-value=3.6e+02 Score=29.82 Aligned_cols=29 Identities=17% Similarity=0.278 Sum_probs=24.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecCC
Q 006566 113 DTKDVAGTVEEVMRIADQGADLVRITVQG 141 (640)
Q Consensus 113 ~T~Dv~atv~Qi~rl~~aGceiVRvtvp~ 141 (640)
..++.+..+++++.+.+.|..-|.++-++
T Consensus 166 r~r~~e~Vv~Ei~~l~~~g~~ei~l~~~~ 194 (429)
T TIGR00089 166 RSRPPEDILEEVKELVSKGVKEIVLLGQN 194 (429)
T ss_pred CCCCHHHHHHHHHHHHHCCCceEEEEeec
Confidence 35778999999999999999999988655
No 346
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=49.48 E-value=23 Score=38.77 Aligned_cols=50 Identities=22% Similarity=0.395 Sum_probs=36.9
Q ss_pred CCCHHHHHH----HHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCC-Ccceee
Q 006566 114 TKDVAGTVE----EVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNY-NIPLVA 166 (640)
Q Consensus 114 T~Dv~atv~----Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~-~iPLVA 166 (640)
.-|-++|++ |....++||||+| +|+-===--.+.||+.|.+.|+ ++|+++
T Consensus 137 ~idND~Tl~~L~~~Al~~A~AGaDiV---APSdMMDGrV~aIR~aLd~~g~~~v~ImS 191 (323)
T PRK09283 137 YVDNDETLELLAKQALSQAEAGADIV---APSDMMDGRVGAIREALDEAGFTDVPIMS 191 (323)
T ss_pred cCcCHHHHHHHHHHHHHHHHhCCCEE---EcccccccHHHHHHHHHHHCCCCCCceee
Confidence 445566665 5556799999998 4543333457899999999999 599986
No 347
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=49.34 E-value=4.4e+02 Score=34.82 Aligned_cols=157 Identities=18% Similarity=0.249 Sum_probs=95.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecC----CHHHHHHHHHHHHHhhcCCCCcceeeccC--CCHHHHHHHhhhcCceeeC
Q 006566 115 KDVAGTVEEVMRIADQGADLVRITVQ----GKREADACFEIKNSLVQKNYNIPLVADIH--FAPSVALRVAECFDKIRVN 188 (640)
Q Consensus 115 ~Dv~atv~Qi~rl~~aGceiVRvtvp----~~~~A~~l~~I~~~L~~~g~~iPLVADIH--F~~~~Al~Aa~~v~KVRIN 188 (640)
.+.+..++|++++.+.|...+.+-+- -.+|++.++.|++. -|-++.|..|-| |++.-|+..++.++..
T Consensus 1089 ~~~~~~~~~a~~~~~~Gf~~~KlKvG~~~~~~~D~~~i~alRe~---~G~~~~LrlDAN~~ws~~~A~~~~~~L~~~--- 1162 (1655)
T PLN02980 1089 GSPLEVAYVARKLVEEGFSAIKLKVGRRVSPIQDAAVIQEVRKA---VGYQIELRADANRNWTYEEAIEFGSLVKSC--- 1162 (1655)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHHHHHH---cCCCCeEEEECCCCCCHHHHHHHHHHHhhc---
Confidence 47788999999999999999998763 24677788888774 466799999987 5667677766666543
Q ss_pred CCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcH----hHHHHh--C-C----Ch--
Q 006566 189 PGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSD----RIMSYY--G-D----SP-- 255 (640)
Q Consensus 189 PGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~----ril~ry--G-d----tp-- 255 (640)
|+-- +|+=. .+ ...+.+.+++.++||=.|=.--++.+ ++...+ | + .|
T Consensus 1163 --~i~~----iEqPl-~~-------------~~~l~~l~~~~~iPIA~DEs~~~~~~~~~~~~~~~i~~~~~~i~iK~~~ 1222 (1655)
T PLN02980 1163 --NLKY----IEEPV-QD-------------EDDLIKFCEETGLPVALDETIDKFEECPLRMLTKYTHPGIVAVVIKPSV 1222 (1655)
T ss_pred --CCCE----EECCC-CC-------------HHHHHHHHHhCCCCEEeCCCcCCcccchHHHHHHHHHCCCeEEEeChhh
Confidence 2211 12111 11 12233455666677644443333322 122211 1 1 12
Q ss_pred HHHHHHHHHHHHHHHHCCCCcEEEE-EEeCChhhHHHHHHHHHHHH
Q 006566 256 RGMVESAFEFARICRKLDFHNFLFS-MKASNPVVMVQAYRLLVAEM 300 (640)
Q Consensus 256 ~gMVeSAle~~~i~e~~~F~diviS-mKsSn~~~mV~AyRlL~~~m 300 (640)
.|=+.-|++.+++|+++|. .+++| +=-| .+...|+-.|+..+
T Consensus 1223 ~GGit~~~~ia~~A~~~gi-~~~~~s~~es--~Ig~aA~~hlaa~~ 1265 (1655)
T PLN02980 1223 VGGFENAALIARWAQQHGK-MAVISAAYES--GLGLSAYIQFASYL 1265 (1655)
T ss_pred hCCHHHHHHHHHHHHHcCC-eEEecCcccC--HHHHHHHHHHHHhc
Confidence 2336788999999999988 45554 2223 35567777777764
No 348
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=49.34 E-value=90 Score=34.43 Aligned_cols=66 Identities=14% Similarity=0.052 Sum_probs=50.4
Q ss_pred HHHHHHHHHHhhcCCCCcceeeccC-CCHHHHHHHhhh--cCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHH
Q 006566 145 ADACFEIKNSLVQKNYNIPLVADIH-FAPSVALRVAEC--FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFS 221 (640)
Q Consensus 145 A~~l~~I~~~L~~~g~~iPLVADIH-F~~~~Al~Aa~~--v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~ 221 (640)
.+.+.++++ .+++||.+|=+ |++.-+..+++. ++-|++-|+..|.-.. ..
T Consensus 246 ~~~~~~L~~-----~~~iPIa~dEs~~~~~~~~~li~~~a~dii~~d~~~~GGit~----------------------~~ 298 (404)
T PRK15072 246 QEAFRLIRQ-----HTTTPLAVGEVFNSIWDCKQLIEEQLIDYIRTTVTHAGGITH----------------------LR 298 (404)
T ss_pred HHHHHHHHh-----cCCCCEEeCcCccCHHHHHHHHHcCCCCEEecCccccCcHHH----------------------HH
Confidence 455556665 48899999976 467666666664 9999999999987442 67
Q ss_pred HHHHHHHHcCCeEEEe
Q 006566 222 PLVEKCKKYGRAVRIG 237 (640)
Q Consensus 222 ~lV~~~Ke~g~aIRIG 237 (640)
.+...|..+|+.+=++
T Consensus 299 kia~lA~~~gi~~~~h 314 (404)
T PRK15072 299 RIADFAALYQVRTGSH 314 (404)
T ss_pred HHHHHHHHcCCceeec
Confidence 8899999999998553
No 349
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=49.18 E-value=1e+02 Score=29.91 Aligned_cols=79 Identities=18% Similarity=0.178 Sum_probs=52.4
Q ss_pred CCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCC-HHH-HHHHHHHHHHhhcCCCCcceeeccC--CCHHHHH
Q 006566 101 EHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQG-KRE-ADACFEIKNSLVQKNYNIPLVADIH--FAPSVAL 176 (640)
Q Consensus 101 ~~PI~VQSMt~t~T~Dv~atv~Qi~rl~~aGceiVRvtvp~-~~~-A~~l~~I~~~L~~~g~~iPLVADIH--F~~~~Al 176 (640)
+.||-+.-|++..- -.+++.+.++|++++=+-..+ .+. .+.++.+++ ..++++.+++ ++|.-++
T Consensus 53 ~~~i~~~~~v~~~~------~~~~~~~~~aGad~i~~h~~~~~~~~~~~i~~~~~------~g~~~~v~~~~~~t~~e~~ 120 (202)
T cd04726 53 DKIIVADLKTADAG------ALEAEMAFKAGADIVTVLGAAPLSTIKKAVKAAKK------YGKEVQVDLIGVEDPEKRA 120 (202)
T ss_pred CCEEEEEEEecccc------HHHHHHHHhcCCCEEEEEeeCCHHHHHHHHHHHHH------cCCeEEEEEeCCCCHHHHH
Confidence 45677777766332 146688999999998764433 222 233344443 4578888844 5677777
Q ss_pred HHhhh-cCceeeCCCC
Q 006566 177 RVAEC-FDKIRVNPGN 191 (640)
Q Consensus 177 ~Aa~~-v~KVRINPGN 191 (640)
.+... ++-|-++|+-
T Consensus 121 ~~~~~~~d~v~~~~~~ 136 (202)
T cd04726 121 KLLKLGVDIVILHRGI 136 (202)
T ss_pred HHHHCCCCEEEEcCcc
Confidence 77776 9999999873
No 350
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=48.99 E-value=1.2e+02 Score=32.71 Aligned_cols=66 Identities=20% Similarity=0.276 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhhcCCCCcceeeccCC-CHHHHHHHhh--hcCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHH
Q 006566 145 ADACFEIKNSLVQKNYNIPLVADIHF-APSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFS 221 (640)
Q Consensus 145 A~~l~~I~~~L~~~g~~iPLVADIHF-~~~~Al~Aa~--~v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~ 221 (640)
.+.++++++ .+++|+.+|=++ ++.-+...++ .++-|.|.|.-.|.-.. ..
T Consensus 227 ~~~~~~l~~-----~~~~pia~dE~~~~~~~~~~~~~~~~~d~~~~d~~~~GGi~~----------------------~~ 279 (368)
T TIGR02534 227 REALARLTR-----RFNVPIMADESVTGPADALAIAKASAADVFALKTTKSGGLLE----------------------SK 279 (368)
T ss_pred HHHHHHHHH-----hCCCCEEeCcccCCHHHHHHHHHhCCCCEEEEcccccCCHHH----------------------HH
Confidence 344445544 488999999665 4544444444 48999999999887332 67
Q ss_pred HHHHHHHHcCCeEEEe
Q 006566 222 PLVEKCKKYGRAVRIG 237 (640)
Q Consensus 222 ~lV~~~Ke~g~aIRIG 237 (640)
.+...|+.+|+++=+|
T Consensus 280 ~i~~lA~~~gi~~~~~ 295 (368)
T TIGR02534 280 KIAAIAEAAGIALYGG 295 (368)
T ss_pred HHHHHHHHcCCceeee
Confidence 8999999999997444
No 351
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=48.92 E-value=3.7e+02 Score=28.98 Aligned_cols=162 Identities=15% Similarity=0.262 Sum_probs=84.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCHHHH---HHHHHHHHHhhcCCCCcceeeccCCCH----HHHHHHhhh-cCcee
Q 006566 115 KDVAGTVEEVMRIADQGADLVRITVQGKREA---DACFEIKNSLVQKNYNIPLVADIHFAP----SVALRVAEC-FDKIR 186 (640)
Q Consensus 115 ~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~A---~~l~~I~~~L~~~g~~iPLVADIHF~~----~~Al~Aa~~-v~KVR 186 (640)
.+.+-+-.-+...++.++-++=-..|+.-.. +.+....+. .++.+.+|++ +|.|+ .....|++. +..|=
T Consensus 26 ~n~e~~~avi~AAe~~~sPvIl~~~~~~~~~~g~~~~~~~~~~-~A~~~~vPV~--lHLDH~~~~e~i~~Ai~~GftSVM 102 (283)
T PRK07998 26 TNLETTISILNAIERSGLPNFIQIAPTNAQLSGYDYIYEIVKR-HADKMDVPVS--LHLDHGKTFEDVKQAVRAGFTSVM 102 (283)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEECcHhHHhhCCHHHHHHHHHH-HHHHCCCCEE--EECcCCCCHHHHHHHHHcCCCEEE
Confidence 4555555666666666766665555544322 223322222 1225788876 67764 466677766 66666
Q ss_pred eCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeE--EEeeCCCCCcHhH--HHHhCCChHHHHHHH
Q 006566 187 VNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAV--RIGTNHGSLSDRI--MSYYGDSPRGMVESA 262 (640)
Q Consensus 187 INPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aI--RIGvNhGSLs~ri--l~ryGdtp~gMVeSA 262 (640)
| |.. ..+|++-++ ..+++|+.|+.+|+++ -||.=.|.=.... -+.| -+| |.|
T Consensus 103 ~------DgS---------~l~~eeNi~----~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~-T~p----e~a 158 (283)
T PRK07998 103 I------DGA---------ALPFEENIA----FTKEAVDFAKSYGVPVEAELGAILGKEDDHVSEADCK-TEP----EKV 158 (283)
T ss_pred E------eCC---------CCCHHHHHH----HHHHHHHHHHHcCCEEEEEeccCCCcccccccccccc-CCH----HHH
Confidence 5 211 122333333 3677999999999998 4444322211100 1112 345 444
Q ss_pred HHHHHHHHHCCCCcEEEEEEeCC-----hhhHHHHHHHHHHHHHHcCCCcceEE
Q 006566 263 FEFARICRKLDFHNFLFSMKASN-----PVVMVQAYRLLVAEMYVHGWDYPLHL 311 (640)
Q Consensus 263 le~~~i~e~~~F~diviSmKsSn-----~~~mV~AyRlL~~~m~~~g~dyPLHL 311 (640)
.+ ++++.|-+-+-+|+=... |..-.+-.+.+.+. .+.||=|
T Consensus 159 ~~---Fv~~TgvD~LAvaiGt~HG~Y~~p~l~~~~l~~I~~~-----~~vPLVl 204 (283)
T PRK07998 159 KD---FVERTGCDMLAVSIGNVHGLEDIPRIDIPLLKRIAEV-----SPVPLVI 204 (283)
T ss_pred HH---HHHHhCcCeeehhccccccCCCCCCcCHHHHHHHHhh-----CCCCEEE
Confidence 44 455666665555551110 33334545555555 6788744
No 352
>PLN02537 diaminopimelate decarboxylase
Probab=48.82 E-value=2.3e+02 Score=31.02 Aligned_cols=30 Identities=17% Similarity=0.283 Sum_probs=22.6
Q ss_pred HHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHH
Q 006566 122 EEVMRIADQGADLVRITVQGKREADACFEIKNS 154 (640)
Q Consensus 122 ~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~ 154 (640)
++++...+.|. ++++.+.++.+.|.++.++
T Consensus 100 ~~l~~a~~~gv---~i~ids~~el~~l~~~a~~ 129 (410)
T PLN02537 100 EDLVLAAQEGV---FVNVDSEFDLENIVEAARI 129 (410)
T ss_pred HHHHHHHHCCC---EEEECCHHHHHHHHHHHHh
Confidence 45666777773 6888888888888887764
No 353
>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong
Probab=48.66 E-value=2.6e+02 Score=29.87 Aligned_cols=109 Identities=12% Similarity=0.053 Sum_probs=64.4
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCCHH--HHHHHHHHHHHhhcCCC---CcceeeccCCCHHHHHHHhhh---cCce
Q 006566 114 TKDVAGTVEEVMRIADQGADLVRITVQGKR--EADACFEIKNSLVQKNY---NIPLVADIHFAPSVALRVAEC---FDKI 185 (640)
Q Consensus 114 T~Dv~atv~Qi~rl~~aGceiVRvtvp~~~--~A~~l~~I~~~L~~~g~---~iPLVADIHF~~~~Al~Aa~~---v~KV 185 (640)
...++.-++=+..|.++|.+.+=++.|.+. +.+.++.|.+. +. ++.++|=.+=.-.-...|+++ ++.-
T Consensus 19 ~~s~~~Ki~ia~~L~~~Gv~~IE~gfP~~~~~e~e~~~~i~~~----~~~~~~~~~~al~r~~~~die~a~~~~~~~~~~ 94 (284)
T cd07942 19 PMSVEQKLRFFKLLVKIGFKEIEVGFPSASQTDFDFVRELIEE----DLIPDDVTIQVLTQAREDLIERTFEALRGAKKA 94 (284)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHc----cCCCCCCEEEEEcCCChhhHHHHHHHhCCCCCC
Confidence 356788888899999999999999888654 44677777543 32 355556555444423344443 3322
Q ss_pred eeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCe
Q 006566 186 RVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRA 233 (640)
Q Consensus 186 RINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~a 233 (640)
+|+=-.=.+.- |. ...+..-.+.+.+++.+.|+.||++|..
T Consensus 95 ~v~i~~~~Sd~--h~-----~~~~~~s~~e~~~~~~~~v~~a~~~g~~ 135 (284)
T cd07942 95 IVHLYNATSPL--QR-----RVVFGKSKEEIIEIAVDGAKLVKELAAK 135 (284)
T ss_pred EEEEEEcCCHH--HH-----HHHhCCCHHHHHHHHHHHHHHHHHhccc
Confidence 34221111100 00 0112233466677789999999999853
No 354
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=48.62 E-value=1.1e+02 Score=32.36 Aligned_cols=79 Identities=23% Similarity=0.221 Sum_probs=60.7
Q ss_pred CceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHH-----HHHHHHHHHHHhhcCCCCcceeeccCCCHHHHH
Q 006566 102 HPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKR-----EADACFEIKNSLVQKNYNIPLVADIHFAPSVAL 176 (640)
Q Consensus 102 ~PI~VQSMt~t~T~Dv~atv~Qi~rl~~aGceiVRvtvp~~~-----~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al 176 (640)
+|+.+|=.... |.+.+.+.++++.+.|++.+=+++.... ..+.++.|++. +++|++.=.-.++..|.
T Consensus 116 ~~~~~ql~~~~---~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~~~~~~~~i~~l~~~-----~~~pvivK~v~s~~~a~ 187 (299)
T cd02809 116 GPRWFQLYVPR---DREITEDLLRRAEAAGYKALVLTVDTPVLGRRLTWDDLAWLRSQ-----WKGPLILKGILTPEDAL 187 (299)
T ss_pred CCeEEEEeecC---CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCCHHHHHHHHHh-----cCCCEEEeecCCHHHHH
Confidence 68888865433 6677778888889999998877653332 23678888874 77999877668899999
Q ss_pred HHhhh-cCceeeC
Q 006566 177 RVAEC-FDKIRVN 188 (640)
Q Consensus 177 ~Aa~~-v~KVRIN 188 (640)
.|.++ ++-|-+.
T Consensus 188 ~a~~~G~d~I~v~ 200 (299)
T cd02809 188 RAVDAGADGIVVS 200 (299)
T ss_pred HHHHCCCCEEEEc
Confidence 99999 9999875
No 355
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=48.50 E-value=1.8e+02 Score=26.50 Aligned_cols=51 Identities=20% Similarity=0.291 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHc--CCeEEEeeCCCCCcHhHHHHhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEEeCChh
Q 006566 219 VFSPLVEKCKKY--GRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPV 287 (640)
Q Consensus 219 ~f~~lV~~~Ke~--g~aIRIGvNhGSLs~ril~ryGdtp~gMVeSAle~~~i~e~~~F~diviSmKsSn~~ 287 (640)
.+.++++.+++. +..++|-||...+++. .++.+.+.|+.-+.+|+.+.+..
T Consensus 60 ~~~~~i~~~~~~~~~~~~~i~T~~~~~~~~------------------~~~~l~~~g~~~i~i~le~~~~~ 112 (204)
T cd01335 60 ELAELLRRLKKELPGFEISIETNGTLLTEE------------------LLKELKELGLDGVGVSLDSGDEE 112 (204)
T ss_pred hHHHHHHHHHhhCCCceEEEEcCcccCCHH------------------HHHHHHhCCCceEEEEcccCCHH
Confidence 367788888887 8999999998887543 44445666899999999999866
No 356
>cd00622 PLPDE_III_ODC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase. This subfamily is composed mainly of eukaryotic ornithine decarboxylases (ODC, EC 4.1.1.17) and ODC-like enzymes from prokaryotes represented by Vibrio vulnificus LysineOrnithine decarboxylase. These are fold type III PLP-dependent enzymes that differ from most bacterial ODCs which are fold type I PLP-dependent enzymes. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. Members of this subfamily contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity. Also members of this su
Probab=48.41 E-value=2.5e+02 Score=29.98 Aligned_cols=112 Identities=20% Similarity=0.197 Sum_probs=58.9
Q ss_pred HHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCCCcc-eeeccC-CCHHHHHHHhhhcCceeeCCCCCCchhhhc
Q 006566 122 EEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIP-LVADIH-FAPSVALRVAECFDKIRVNPGNFADRRAQF 199 (640)
Q Consensus 122 ~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~iP-LVADIH-F~~~~Al~Aa~~v~KVRINPGN~~d~~k~F 199 (640)
+=++.+.+.|| .+.|-+..||+.+.+ .|.+-+ ++---. +++.-...|++. .|+ +=|+-+ -
T Consensus 39 ~v~~~l~~~G~---g~~vaS~~E~~~~~~-------~G~~~~~i~~~~~~k~~~~l~~a~~~--gi~--~~~~ds-~--- 100 (362)
T cd00622 39 AVLRTLAALGA---GFDCASKGEIELVLG-------LGVSPERIIFANPCKSISDIRYAAEL--GVR--LFTFDS-E--- 100 (362)
T ss_pred HHHHHHHHcCC---CeEecCHHHHHHHHH-------cCCCcceEEEcCCCCCHHHHHHHHHc--CCC--EEEECC-H---
Confidence 33445667887 789999999887654 355422 333332 234433344433 121 112222 1
Q ss_pred cccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCCChHHHHHHHHHHHHHHHHCC
Q 006566 200 EQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLD 273 (640)
Q Consensus 200 ~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGdtp~gMVeSAle~~~i~e~~~ 273 (640)
+|++++.+ .+++..+.+||-++.|.=.....+|+|-+|+ .+.+.++.+.+.+
T Consensus 101 -----------~el~~l~~-------~~~~~~v~vri~~~~~~~~~~~~sRfGi~~~----~~~~~~~~~~~~~ 152 (362)
T cd00622 101 -----------DELEKIAK-------HAPGAKLLLRIATDDSGALCPLSRKFGADPE----EARELLRRAKELG 152 (362)
T ss_pred -----------HHHHHHHH-------HCCCCEEEEEEeeCCCCCCCcccCCCCCCHH----HHHHHHHHHHHcC
Confidence 23333333 3345667788876655322223478997773 4666666666643
No 357
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=48.35 E-value=38 Score=34.34 Aligned_cols=136 Identities=24% Similarity=0.336 Sum_probs=80.7
Q ss_pred cCCCCceEEEecc--CCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHH-hhcCCCCcceeeccC-----
Q 006566 98 IGSEHPIRVQTMT--TNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNS-LVQKNYNIPLVADIH----- 169 (640)
Q Consensus 98 IGG~~PI~VQSMt--~t~T~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~-L~~~g~~iPLVADIH----- 169 (640)
|||+. +.|-++. +.|.++.+-+-.+++++.+ ||+|=..-.+.+ ..+..+.+. ....-.-+++..+++
T Consensus 15 I~gd~-v~V~~l~p~~~dpH~~~~~p~d~~~l~~--Adlvv~~G~~~e--~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~ 89 (256)
T PF01297_consen 15 IGGDK-VEVTSLVPPGADPHDYEPTPSDIKKLQK--ADLVVYNGLGLE--PWLEKLLESSQNPKVKVIDLSEGIDLDHHG 89 (256)
T ss_dssp HHTTG-SEEEESSETTSCTTT----HHHHHHHHH--SSEEEES-TTTS--CCHHHHHHTTTTTTTEEEETTTTS-GSTTC
T ss_pred HhCCc-eEEEecCCCCCccccccCChHHHHHHHh--CCEEEEeCCccc--hhhhhhhhcccccccceEEeecccccccCC
Confidence 67776 8888987 4677999999999999987 477766556666 335555522 122222255556662
Q ss_pred ------CCHHHHHHHhhh-cCce-eeCCCCCCchhhhccccccc--hHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeC
Q 006566 170 ------FAPSVALRVAEC-FDKI-RVNPGNFADRRAQFEQLEYT--DDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTN 239 (640)
Q Consensus 170 ------F~~~~Al~Aa~~-v~KV-RINPGN~~d~~k~F~~~eYt--deeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvN 239 (640)
++|..+...++. .+++ ++.|.|=. .|. =+.|.++|+.+.+++...++.++. ..+=+-
T Consensus 90 ~npH~Wldp~~~~~~~~~Ia~~L~~~~P~~~~---------~y~~N~~~~~~~L~~l~~~~~~~~~~~~~----~~~v~~ 156 (256)
T PF01297_consen 90 HNPHVWLDPENAKKMAEAIADALSELDPANKD---------YYEKNAEKYLKELDELDAEIKEKLAKLPG----RPVVVY 156 (256)
T ss_dssp BESTGGGSHHHHHHHHHHHHHHHHHHTGGGHH---------HHHHHHHHHHHHHHHHHHHHHHHHTTSSG----GEEEEE
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHhCccchH---------HHHHHHHHHHHHHHHHHHHHHHHhhcccC----CeEEEE
Confidence 378888877776 3332 46665421 122 245777888887777777766555 344677
Q ss_pred CCCCcHhHHHHhC
Q 006566 240 HGSLSDRIMSYYG 252 (640)
Q Consensus 240 hGSLs~ril~ryG 252 (640)
|.++. -+.++||
T Consensus 157 h~~~~-Y~~~~~g 168 (256)
T PF01297_consen 157 HDAFQ-YFAKRYG 168 (256)
T ss_dssp ESTTH-HHHHHTT
T ss_pred ChHHH-HHHHhcC
Confidence 77774 3455554
No 358
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=48.32 E-value=1.7e+02 Score=31.19 Aligned_cols=83 Identities=10% Similarity=0.002 Sum_probs=47.3
Q ss_pred HHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEEeCChhhHHHHHHHHHHHH
Q 006566 221 SPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEM 300 (640)
Q Consensus 221 ~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGdtp~gMVeSAle~~~i~e~~~F~diviSmKsSn~~~mV~AyRlL~~~m 300 (640)
.++++..++.|.-+||-+.-=|.+++++++.+-.. -++...+.++.+++.||. +.+.+=.--|-.+.+.....++.+
T Consensus 126 l~~L~~l~~~G~~~~i~lGlQS~~d~~L~~i~Rg~--t~~~~~~ai~~l~~~gi~-v~~~lI~GlPget~e~~~~t~~~l 202 (302)
T TIGR01212 126 LDLLAEYVERGYEVWVELGLQTAHDKTLKKINRGH--DFACYVDAVKRARKRGIK-VCSHVILGLPGEDREEMMETAKIV 202 (302)
T ss_pred HHHHHHhhhCCceEEEEEccCcCCHHHHHHHcCcC--hHHHHHHHHHHHHHcCCE-EEEeEEECCCCCCHHHHHHHHHHH
Confidence 34455556667755555555667889998887311 135667788888999985 444433322333344444444444
Q ss_pred HHcCCC
Q 006566 301 YVHGWD 306 (640)
Q Consensus 301 ~~~g~d 306 (640)
.+.+.+
T Consensus 203 ~~l~~d 208 (302)
T TIGR01212 203 SLLDVD 208 (302)
T ss_pred HhcCCC
Confidence 445555
No 359
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=48.17 E-value=1.1e+02 Score=35.19 Aligned_cols=98 Identities=15% Similarity=0.259 Sum_probs=67.7
Q ss_pred HHHHHHHHHHcCCCEEEEec---CCHHHHHHHHHHHHHhhcCCC-Ccceee-ccCCCHHHHHHHhhh-cCcee--eCCCC
Q 006566 120 TVEEVMRIADQGADLVRITV---QGKREADACFEIKNSLVQKNY-NIPLVA-DIHFAPSVALRVAEC-FDKIR--VNPGN 191 (640)
Q Consensus 120 tv~Qi~rl~~aGceiVRvtv---p~~~~A~~l~~I~~~L~~~g~-~iPLVA-DIHF~~~~Al~Aa~~-v~KVR--INPGN 191 (640)
..+.+..|.++|+++|=+-+ ++..-.+.+++||++ + ++|++| |+ =++.-|..++++ +|-|| |-||-
T Consensus 228 ~~~~a~~Lv~aGvd~i~~D~a~~~~~~~~~~i~~ik~~-----~p~~~v~agnv-~t~~~a~~l~~aGad~v~vgig~gs 301 (479)
T PRK07807 228 VAAKARALLEAGVDVLVVDTAHGHQEKMLEALRAVRAL-----DPGVPIVAGNV-VTAEGTRDLVEAGADIVKVGVGPGA 301 (479)
T ss_pred HHHHHHHHHHhCCCEEEEeccCCccHHHHHHHHHHHHH-----CCCCeEEeecc-CCHHHHHHHHHcCCCEEEECccCCc
Confidence 34778889999999976643 345666777888874 6 599999 77 478899999999 99888 77877
Q ss_pred CCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeE
Q 006566 192 FADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAV 234 (640)
Q Consensus 192 ~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aI 234 (640)
+--.. .||..-+ .--+.+.++.+.|+++++|+
T Consensus 302 ictt~------~~~~~~~-----p~~~av~~~~~~~~~~~~~v 333 (479)
T PRK07807 302 MCTTR------MMTGVGR-----PQFSAVLECAAAARELGAHV 333 (479)
T ss_pred ccccc------cccCCch-----hHHHHHHHHHHHHHhcCCcE
Confidence 65422 2333222 11223555666677888887
No 360
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=48.09 E-value=3.1e+02 Score=27.78 Aligned_cols=87 Identities=18% Similarity=0.279 Sum_probs=53.0
Q ss_pred HHHHHHHHcCCCEEEEecCCHHH-------HHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhhcCceeeCCCCCCc
Q 006566 122 EEVMRIADQGADLVRITVQGKRE-------ADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFAD 194 (640)
Q Consensus 122 ~Qi~rl~~aGceiVRvtvp~~~~-------A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~v~KVRINPGN~~d 194 (640)
..+.++.+.|.+-|-+....... .+.++++++.+.+.| +++.+ |-.+ +.|+.+
T Consensus 14 ~~~~~~~~~G~~~vel~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--l~ls~--h~p~----------------~~nl~s 73 (273)
T smart00518 14 KAFIEAVDIGARSFQLFLGNPRSWKGVRLSEETAEKFKEALKENN--IDVSV--HAPY----------------LINLAS 73 (273)
T ss_pred HHHHHHHHcCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHcC--CCEEE--ECCc----------------eecCCC
Confidence 56788889999999887555422 234555565555545 55553 3210 134444
Q ss_pred hhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCC
Q 006566 195 RRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGS 242 (640)
Q Consensus 195 ~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGS 242 (640)
... +..++-.+.++..++.|++.|.. .|.+..|.
T Consensus 74 ~d~-------------~~r~~~~~~l~~~i~~A~~lGa~-~vv~h~g~ 107 (273)
T smart00518 74 PDK-------------EKVEKSIERLIDEIKRCEELGIK-ALVFHPGS 107 (273)
T ss_pred CCH-------------HHHHHHHHHHHHHHHHHHHcCCC-EEEEcccc
Confidence 321 12334445577788999999998 47887775
No 361
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=48.07 E-value=1e+02 Score=34.03 Aligned_cols=99 Identities=15% Similarity=0.173 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCCCcceeec-cCCCHHHHHHHhhh--c----CceeeC
Q 006566 116 DVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVAD-IHFAPSVALRVAEC--F----DKIRVN 188 (640)
Q Consensus 116 Dv~atv~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~iPLVAD-IHF~~~~Al~Aa~~--v----~KVRIN 188 (640)
|.+.+++-+++|.+.|.+.+===+|- ++.+.++.++++ +++|+.+| -.|++.-+...++. + +=|.+.
T Consensus 217 ~~~~A~~~~~~l~~~~~~~iEeP~~~-~d~~~~~~L~~~-----~~iPIa~gEs~~~~~~~~~li~~~a~~~~~div~~d 290 (385)
T cd03326 217 DLETAIAYAKALAPYGLRWYEEPGDP-LDYALQAELADH-----YDGPIATGENLFSLQDARNLLRYGGMRPDRDVLQFD 290 (385)
T ss_pred CHHHHHHHHHHhhCcCCCEEECCCCc-cCHHHHHHHHhh-----CCCCEEcCCCcCCHHHHHHHHHhCCccccCCEEEeC
Q ss_pred CCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCC
Q 006566 189 PGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGS 242 (640)
Q Consensus 189 PGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGS 242 (640)
+...|.-.. +..+.+.|..+|+++..=+.|++
T Consensus 291 ~~~~GGit~----------------------~~kia~lA~a~gi~~~~~~pH~~ 322 (385)
T cd03326 291 PGLSYGLPE----------------------YLRMLDVLEAHGWSRRRFFPHGG 322 (385)
T ss_pred chhhCCHHH----------------------HHHHHHHHHHcCCCCceeecchH
No 362
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=47.97 E-value=27 Score=34.74 Aligned_cols=68 Identities=18% Similarity=0.156 Sum_probs=47.1
Q ss_pred CCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecC-------------CHHHHHHHHHHHHHhhcCCCCcceeec
Q 006566 101 EHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQ-------------GKREADACFEIKNSLVQKNYNIPLVAD 167 (640)
Q Consensus 101 ~~PI~VQSMt~t~T~Dv~atv~Qi~rl~~aGceiVRvtvp-------------~~~~A~~l~~I~~~L~~~g~~iPLVAD 167 (640)
++|+..+-|.+.-.... .+-+.+..+.++|+..|||-+. +..--+.|.++.+...++|+.+ |-|
T Consensus 5 G~~v~~~G~n~~w~~~~-~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~v--ild 81 (281)
T PF00150_consen 5 GKPVNWRGFNTHWYNPS-ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYV--ILD 81 (281)
T ss_dssp SEBEEEEEEEETTSGGG-SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EE--EEE
T ss_pred CCeEEeeeeecccCCCC-CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeE--EEE
Confidence 56677777766533222 4556677889999999999865 1334567777777788888776 679
Q ss_pred cCCC
Q 006566 168 IHFA 171 (640)
Q Consensus 168 IHF~ 171 (640)
+|=.
T Consensus 82 ~h~~ 85 (281)
T PF00150_consen 82 LHNA 85 (281)
T ss_dssp EEES
T ss_pred eccC
Confidence 9977
No 363
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=47.62 E-value=57 Score=34.75 Aligned_cols=64 Identities=20% Similarity=0.188 Sum_probs=50.4
Q ss_pred HHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhh-cCcee
Q 006566 120 TVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIR 186 (640)
Q Consensus 120 tv~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~-v~KVR 186 (640)
|++|.+..+++|+|+|.+.-++.++.+.+-++.+ ...-++++.|=-..+|+-+.+.++. +|-|=
T Consensus 191 tleea~~A~~~GaDiI~LDn~~~e~l~~~v~~~~---~~~~~~~ieAsGgIt~~ni~~ya~~GvD~Is 255 (273)
T PRK05848 191 SLEEAKNAMNAGADIVMCDNMSVEEIKEVVAYRN---ANYPHVLLEASGNITLENINAYAKSGVDAIS 255 (273)
T ss_pred CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhh---ccCCCeEEEEECCCCHHHHHHHHHcCCCEEE
Confidence 7899999999999999999998888766665432 2223477999988899988888887 77653
No 364
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=47.60 E-value=1.5e+02 Score=32.39 Aligned_cols=67 Identities=28% Similarity=0.389 Sum_probs=45.2
Q ss_pred HHHHHHHHHHcCCeEEEeeCCCC-------CcH----hHHHHhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEEeCChhh
Q 006566 220 FSPLVEKCKKYGRAVRIGTNHGS-------LSD----RIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVV 288 (640)
Q Consensus 220 f~~lV~~~Ke~g~aIRIGvNhGS-------Ls~----ril~ryGdtp~gMVeSAle~~~i~e~~~F~diviSmKsSn~~~ 288 (640)
..+|++.||++||-+===.--|| |.+ +|-++||-||.-. -+|++-+.|. ++--||+|+.-
T Consensus 190 Q~~L~~fCk~~~I~v~AYSpLg~~~~~~~ll~~~~l~~iA~K~~kt~aQI------lLrw~~q~g~---~vipKS~~~~R 260 (300)
T KOG1577|consen 190 QKKLVEFCKSKGIVVTAYSPLGSPGRGSDLLEDPVLKEIAKKYNKTPAQI------LLRWALQRGV---SVIPKSSNPER 260 (300)
T ss_pred hHHHHHHHhhCCcEEEEecCCCCCCCccccccCHHHHHHHHHhCCCHHHH------HHHHHHhCCc---EEEeccCCHHH
Confidence 35689999999997732212222 222 4568899998333 4566666665 88899999998
Q ss_pred HHHHHHH
Q 006566 289 MVQAYRL 295 (640)
Q Consensus 289 mV~AyRl 295 (640)
+.+....
T Consensus 261 i~eN~~v 267 (300)
T KOG1577|consen 261 IKENFKV 267 (300)
T ss_pred HHHHHhh
Confidence 7776663
No 365
>PF00923 Transaldolase: Transaldolase; InterPro: IPR001585 Transaldolase (2.2.1.2 from EC) catalyses the reversible transfer of a three-carbon ketol unit from sedoheptulose 7-phosphate to glyceraldehyde 3-phosphate to form erythrose 4-phosphate and fructose 6-phosphate. This enzyme, together with transketolase, provides a link between the glycolytic and pentose-phosphate pathways. Transaldolase is an enzyme of about 34 kDa whose sequence has been well conserved throughout evolution. A lysine has been implicated [] in the catalytic mechanism of the enzyme; it acts as a nucleophilic group that attacks the carbonyl group of fructose-6-phosphate.; GO: 0005975 carbohydrate metabolic process; PDB: 3R5E_A 1F05_A 1I2P_A 1UCW_A 1ONR_A 1I2O_B 3KOF_A 3CWN_B 1I2N_A 1I2Q_A ....
Probab=47.48 E-value=27 Score=36.84 Aligned_cols=77 Identities=26% Similarity=0.320 Sum_probs=55.8
Q ss_pred CCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCC-CEEEEecCCHHHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHH
Q 006566 99 GSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGA-DLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALR 177 (640)
Q Consensus 99 GG~~PI~VQSMt~t~T~Dv~atv~Qi~rl~~aGc-eiVRvtvp~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~ 177 (640)
|..-||.||-...-. .|++++++|.++|.+.+- +=|=|.+|.-++ .++.|++ |.+.| ||+-+--=|.+.=|..
T Consensus 74 g~~G~vsvqv~p~~~-~d~e~~i~~A~~l~~~~~r~~v~IKIPaT~~--Gi~A~~~-L~~~G--I~vn~T~vfs~~Qa~~ 147 (287)
T PF00923_consen 74 GKDGPVSVQVDPRLA-YDAEEMIEEARRLHALFERPNVVIKIPATEE--GIKAIKE-LEAEG--IPVNATLVFSVEQAIA 147 (287)
T ss_dssp TSSSEEEEE-SGGGT-TSHHHHHHHHHHHHHHHHGGTEEEEEESSHH--HHHHHHH-HHHTT---EEEEEEE-SHHHHHH
T ss_pred CCCceEEEecCCccc-cCHHHHHHHHHHHHHhccccCeeEECCCCHH--HHHHHHH-HhhCC--ceEEEEecccHHHHHH
Confidence 889999999765433 499999999999999887 344566776533 4555543 44444 7888888899999999
Q ss_pred Hhhh
Q 006566 178 VAEC 181 (640)
Q Consensus 178 Aa~~ 181 (640)
|+++
T Consensus 148 aa~A 151 (287)
T PF00923_consen 148 AAQA 151 (287)
T ss_dssp HHHT
T ss_pred HHhc
Confidence 9988
No 366
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=47.46 E-value=37 Score=37.80 Aligned_cols=30 Identities=17% Similarity=0.270 Sum_probs=20.2
Q ss_pred eeccCCCHHHHHHHhhh--cCceeeCCCCCCc
Q 006566 165 VADIHFAPSVALRVAEC--FDKIRVNPGNFAD 194 (640)
Q Consensus 165 VADIHF~~~~Al~Aa~~--v~KVRINPGN~~d 194 (640)
|..-.=.+.+|..+.+. +.+|-.||||-|-
T Consensus 10 iG~g~rehal~~~~~~~~~~~~~~~~pgn~g~ 41 (426)
T PRK13789 10 IGSGGRESAIAFALRKSNLLSELKVFPGNGGF 41 (426)
T ss_pred ECCCHHHHHHHHHHHhCCCCCEEEEECCchHH
Confidence 33333345666666665 7899999999864
No 367
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=47.43 E-value=1.1e+02 Score=33.85 Aligned_cols=71 Identities=20% Similarity=0.206 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHhhcCCCCcceeeccCC-CHHHHHHHhh--hcCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhH
Q 006566 144 EADACFEIKNSLVQKNYNIPLVADIHF-APSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVF 220 (640)
Q Consensus 144 ~A~~l~~I~~~L~~~g~~iPLVADIHF-~~~~Al~Aa~--~v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f 220 (640)
+.+.+..++++ -.++||+.+|=|. ++.-+...++ ++|=|++.+...|.-.. +
T Consensus 247 d~~~~~~L~~~---~~~~i~ia~gE~~~~~~~~~~li~~~a~Divq~d~~~~GGit~----------------------~ 301 (394)
T PRK15440 247 DYWGYRELKRN---APAGMMVTSGEHEATLQGFRTLLEMGCIDIIQPDVGWCGGLTE----------------------L 301 (394)
T ss_pred cHHHHHHHHHh---CCCCCceecCCCccCHHHHHHHHHcCCCCEEeCCccccCCHHH----------------------H
Confidence 44455555553 1234788888765 4444444544 59999999999987432 7
Q ss_pred HHHHHHHHHcCCeEEEeeCCCC
Q 006566 221 SPLVEKCKKYGRAVRIGTNHGS 242 (640)
Q Consensus 221 ~~lV~~~Ke~g~aIRIGvNhGS 242 (640)
..+...|..+|+++ +.|+|
T Consensus 302 ~kia~lA~a~gi~~---~pH~~ 320 (394)
T PRK15440 302 VKIAALAKARGQLV---VPHGS 320 (394)
T ss_pred HHHHHHHHHcCCee---cccCH
Confidence 78999999999997 55654
No 368
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=47.40 E-value=1.8e+02 Score=27.24 Aligned_cols=108 Identities=17% Similarity=0.211 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHcC-CC--EEEEecCCHHHHHHHHHHHHHhhcCCCCcceeeccC-CCHHHHHHHhhhcCceeeCCCCC
Q 006566 117 VAGTVEEVMRIADQG-AD--LVRITVQGKREADACFEIKNSLVQKNYNIPLVADIH-FAPSVALRVAECFDKIRVNPGNF 192 (640)
Q Consensus 117 v~atv~Qi~rl~~aG-ce--iVRvtvp~~~~A~~l~~I~~~L~~~g~~iPLVADIH-F~~~~Al~Aa~~v~KVRINPGN~ 192 (640)
.+.-++++.++.+-. +. ++++..|+- +..+..+|.+.|++ ++.|+||=++ +-...+..-+-+++++=.+|+..
T Consensus 13 ~~~l~~~l~~a~~d~~~~~ivl~~~s~Gg-~~~~~~~i~~~l~~--~~kpvva~~~g~~~s~g~~la~~~d~~~~~~~a~ 89 (161)
T cd00394 13 ADQLAAQIRFAEADNSVKAIVLEVNTPGG-RVDAGMNIVDALQA--SRKPVIAYVGGQAASAGYYIATAANKIVMAPGTR 89 (161)
T ss_pred HHHHHHHHHHHHhCCCCceEEEEEECCCc-CHHHHHHHHHHHHH--hCCCEEEEECChhHHHHHHHHhCCCEEEECCCCE
Confidence 344556666665533 44 567777765 34445566666654 4589999887 66666665555689888999876
Q ss_pred Cchhhhcccccc-c----hHHHHHHHhhhHhhHHHHHHHH
Q 006566 193 ADRRAQFEQLEY-T----DDEYQKELQHIEEVFSPLVEKC 227 (640)
Q Consensus 193 ~d~~k~F~~~eY-t----deeY~~Ele~I~~~f~~lV~~~ 227 (640)
..-....-...| . .+.+++.++.+.++|...|...
T Consensus 90 ~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~ 129 (161)
T cd00394 90 VGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAEN 129 (161)
T ss_pred EEEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 442221111222 1 2447788899999998888664
No 369
>PRK00955 hypothetical protein; Provisional
Probab=47.32 E-value=2.5e+02 Score=33.60 Aligned_cols=78 Identities=21% Similarity=0.258 Sum_probs=52.3
Q ss_pred eEEEeeCCCCCcHhHHHHhCC-ChHHHHHHHHHHHHHHHHCCCCc-EEEEEEeCChhhHHHHHHHHHHHHHHcCCCcceE
Q 006566 233 AVRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFARICRKLDFHN-FLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLH 310 (640)
Q Consensus 233 aIRIGvNhGSLs~ril~ryGd-tp~gMVeSAle~~~i~e~~~F~d-iviSmKsSn~~~mV~AyRlL~~~m~~~g~dyPLH 310 (640)
-+.||.-||| +++|++++- +.+..-+-.-+|.+++++.|.+. ++-++=+.-|-.+.+.++.+++.+.+.+++ +.|
T Consensus 436 ~L~IapESgS--d~VLk~M~K~~~~~~~~f~~~~~~i~~~~G~~~~I~~yfIvGfPGETeEDf~et~eflkel~~~-~~q 512 (620)
T PRK00955 436 QLKVAPEHIS--DRVLKLMGKPSREVYDKFVKKFDRINKKLGKKQYLVPYLMSSHPGSTLEDAIELAEYTKDLGYQ-PEQ 512 (620)
T ss_pred CceeCcCCCC--hHHHHHhCCCCHHHHHHHHHHHHHhhhhcCCCccEEEEEEEECCCCCHHHHHHHHHHHHHcCCC-cce
Confidence 3788887764 799999874 33222333346778999998862 333455566677788888888888777775 566
Q ss_pred EEe
Q 006566 311 LGV 313 (640)
Q Consensus 311 LGV 313 (640)
+-.
T Consensus 513 V~~ 515 (620)
T PRK00955 513 VQD 515 (620)
T ss_pred eee
Confidence 654
No 370
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=47.29 E-value=26 Score=38.32 Aligned_cols=50 Identities=22% Similarity=0.339 Sum_probs=36.7
Q ss_pred CCCHHHHHH----HHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCC-Ccceee
Q 006566 114 TKDVAGTVE----EVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNY-NIPLVA 166 (640)
Q Consensus 114 T~Dv~atv~----Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~-~iPLVA 166 (640)
.-|-++|++ |....++||||+| +|+-===--.+.||+.|.+.|+ ++|+++
T Consensus 139 ~i~ND~Tl~~L~~~Als~A~AGADiV---APSdMMDGrV~aIR~aLd~~g~~~v~ImS 193 (322)
T PRK13384 139 EVDNDATVENLVKQSVTAAKAGADML---APSAMMDGQVKAIRQGLDAAGFEHVAILA 193 (322)
T ss_pred cCccHHHHHHHHHHHHHHHHcCCCeE---ecccccccHHHHHHHHHHHCCCCCCceee
Confidence 345566665 4556689999998 4443333457899999999999 699986
No 371
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=47.23 E-value=2.6e+02 Score=28.96 Aligned_cols=65 Identities=11% Similarity=0.135 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHcCCCEEEEec------CCHHHHHHHHHHHHHhhcCCCCcceeeccCC-CHHHHHHHhhh-cCceeeC
Q 006566 119 GTVEEVMRIADQGADLVRITV------QGKREADACFEIKNSLVQKNYNIPLVADIHF-APSVALRVAEC-FDKIRVN 188 (640)
Q Consensus 119 atv~Qi~rl~~aGceiVRvtv------p~~~~A~~l~~I~~~L~~~g~~iPLVADIHF-~~~~Al~Aa~~-v~KVRIN 188 (640)
.-++.++++.+.|++-+=++= ......+.+++|.+. ..+|+.++-.. +..-|....+. +++|=||
T Consensus 31 dp~~~a~~~~~~g~~~l~i~Dl~~~~~~~~~n~~~i~~i~~~-----~~~pv~~gGGi~s~~d~~~l~~~G~~~vvig 103 (258)
T PRK01033 31 DPINAVRIFNEKEVDELIVLDIDASKRGSEPNYELIENLASE-----CFMPLCYGGGIKTLEQAKKIFSLGVEKVSIN 103 (258)
T ss_pred CHHHHHHHHHHcCCCEEEEEECCCCcCCCcccHHHHHHHHHh-----CCCCEEECCCCCCHHHHHHHHHCCCCEEEEC
Confidence 456788889999998776662 222233444444442 67899888544 34445555565 8888887
No 372
>PRK13575 3-dehydroquinate dehydratase; Provisional
Probab=47.10 E-value=1e+02 Score=31.95 Aligned_cols=54 Identities=9% Similarity=0.178 Sum_probs=37.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEec--CCHHHHHHHHHHHHHhhcCCCCcceee
Q 006566 112 NDTKDVAGTVEEVMRIADQGADLVRITV--QGKREADACFEIKNSLVQKNYNIPLVA 166 (640)
Q Consensus 112 t~T~Dv~atv~Qi~rl~~aGceiVRvtv--p~~~~A~~l~~I~~~L~~~g~~iPLVA 166 (640)
..|-+.+...+.+.++.+.|+||+-|+| .+.+|+..|-++..+.++. .+.|+|+
T Consensus 136 ~~TP~~~~l~~~~~~m~~~gaDi~KiAv~~~~~~Dvl~Ll~~~~~~~~~-~~~p~i~ 191 (238)
T PRK13575 136 ESTPPLDELKFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAMSTFSDT-MDCKVVG 191 (238)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHHHHHHHHHhc-cCCCEEE
Confidence 4566666777889999999999999998 5666666665554443332 5567654
No 373
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=46.96 E-value=56 Score=33.63 Aligned_cols=60 Identities=18% Similarity=0.150 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHcCCeEEEeeCCCCCcHh----HHHHhC-C-ChHHHHHHHHHHHHHHHHCCCCcEE
Q 006566 219 VFSPLVEKCKKYGRAVRIGTNHGSLSDR----IMSYYG-D-SPRGMVESAFEFARICRKLDFHNFL 278 (640)
Q Consensus 219 ~f~~lV~~~Ke~g~aIRIGvNhGSLs~r----il~ryG-d-tp~gMVeSAle~~~i~e~~~F~div 278 (640)
.-.+.++.++++|+++.|-+|..+-+.. .+.+.| + +++.++-|+.--.+.+++.++.-++
T Consensus 25 ~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~g~~~~~~~i~ts~~~~~~~l~~~~~~~~~ 90 (257)
T TIGR01458 25 GSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRLGFDISEDEVFTPAPAARQLLEEKQLRPML 90 (257)
T ss_pred CHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHcCCCCCHHHeEcHHHHHHHHHHhcCCCeEE
Confidence 3567889999999999999999888632 345567 4 7788888888888888887765333
No 374
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=46.84 E-value=81 Score=31.85 Aligned_cols=114 Identities=13% Similarity=0.125 Sum_probs=69.8
Q ss_pred CCCHHHHHHHHHHHHH---cCCCEEEEecCCHHHHHHHHHHHHHhhcCC-CCcceeeccCCCHHHHHHHhhhcCceeeCC
Q 006566 114 TKDVAGTVEEVMRIAD---QGADLVRITVQGKREADACFEIKNSLVQKN-YNIPLVADIHFAPSVALRVAECFDKIRVNP 189 (640)
Q Consensus 114 T~Dv~atv~Qi~rl~~---aGceiVRvtvp~~~~A~~l~~I~~~L~~~g-~~iPLVADIHF~~~~Al~Aa~~v~KVRINP 189 (640)
+..++..+++++++.+ .-+=++|+..|+- ....+.+|++.|++-. .+.|+||=++.--..+...+-++|+|=.+|
T Consensus 28 ~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~gg-~~~~~~el~~~i~~~~~~~kpVia~~~~~~sggy~lasaad~I~a~p 106 (222)
T cd07018 28 ELSLRDLLEALEKAAEDDRIKGIVLDLDGLSG-GLAKLEELRQALERFRASGKPVIAYADGYSQGQYYLASAADEIYLNP 106 (222)
T ss_pred CccHHHHHHHHHHHhcCCCeEEEEEECCCCCC-CHHHHHHHHHHHHHHHHhCCeEEEEeCCCCchhhhhhhhCCEEEECC
Confidence 3446677777777764 4556788888887 6666677776665422 668999876643333434444588888888
Q ss_pred CCCCch--------------------------------hhhccccccchHH---HHHHHhhhHhhHHHHHHHHH
Q 006566 190 GNFADR--------------------------------RAQFEQLEYTDDE---YQKELQHIEEVFSPLVEKCK 228 (640)
Q Consensus 190 GN~~d~--------------------------------~k~F~~~eYtdee---Y~~Ele~I~~~f~~lV~~~K 228 (640)
+-...- -..|....+|+++ +++.++.+.+.|...|...+
T Consensus 107 ~~~vg~iGv~~~~~~~~~ll~klGv~~~~~~~G~~K~~~~~~~~~~~s~~~r~~~~~~l~~~~~~f~~~Va~~R 180 (222)
T cd07018 107 SGSVELTGLSAETLFFKGLLDKLGVEVQVFRVGEYKSAVEPFTRDDMSPEAREQTQALLDSLWDQYLADVAASR 180 (222)
T ss_pred CceEEeeccchhhhhHHHHHHHcCCcEEEEEEeccccccchhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 643321 1112222445444 67777888888877666543
No 375
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=46.76 E-value=1.2e+02 Score=32.26 Aligned_cols=81 Identities=19% Similarity=0.248 Sum_probs=55.2
Q ss_pred HHHHHHHHHcCCCEEEE-ecCCHHHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhhcCceeeCCCCCCchhhhc
Q 006566 121 VEEVMRIADQGADLVRI-TVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQF 199 (640)
Q Consensus 121 v~Qi~rl~~aGceiVRv-tvp~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~v~KVRINPGN~~d~~k~F 199 (640)
-+|+..|.++|+|++=+ |.|+.+|+++.-..-++ .....|++.=+-|+. .|-..++..
T Consensus 143 ~~q~~~l~~~gvD~i~~ET~~~~~E~~~~~~~~~~---~~~~~pv~is~~~~~----------------~g~l~~G~~-- 201 (304)
T PRK09485 143 RPRIEALAEAGADLLACETIPNLDEAEALVELLKE---EFPGVPAWLSFTLRD----------------GTHISDGTP-- 201 (304)
T ss_pred HHHHHHHhhCCCCEEEEeccCCHHHHHHHHHHHHH---hcCCCcEEEEEEeCC----------------CCcCCCCCC--
Confidence 46789999999999999 79999999965554442 122688886555431 233333331
Q ss_pred cccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCC
Q 006566 200 EQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGS 242 (640)
Q Consensus 200 ~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGS 242 (640)
+..+++..++++.+.=||+|.++
T Consensus 202 --------------------~~~~~~~l~~~~~~~~iGiNC~~ 224 (304)
T PRK09485 202 --------------------LAEAAALLAASPQVVAVGVNCTA 224 (304)
T ss_pred --------------------HHHHHHHHhcCCCceEEEecCCC
Confidence 55666666666666678999974
No 376
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=46.67 E-value=4.5e+02 Score=29.68 Aligned_cols=141 Identities=16% Similarity=0.235 Sum_probs=77.4
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCCHHH-------HHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhhcCcee
Q 006566 114 TKDVAGTVEEVMRIADQGADLVRITVQGKRE-------ADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIR 186 (640)
Q Consensus 114 T~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~-------A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~v~KVR 186 (640)
.++++..+++++.|.+.|..-|.++-++.-. -..+.++-+.+.+. | -+.+||
T Consensus 183 sr~~e~Il~ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~l~~Ll~~l~~~----~-----------------gi~~ir 241 (459)
T PRK14338 183 SRPLAEIVEEVRRIAARGAKEITLLGQIVDSYGHDLPGRPDLADLLEAVHEI----P-----------------GLERLR 241 (459)
T ss_pred cCCHHHHHHHHHHHHHCCCeEEEEeeecCCCcccccCChHHHHHHHHHHHhc----C-----------------CcceEE
Confidence 4688999999999999999999998654321 11233333322110 0 022455
Q ss_pred e---CCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcC---CeEEEeeCCCCCcHhHHHHhCCChHHHHH
Q 006566 187 V---NPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYG---RAVRIGTNHGSLSDRIMSYYGDSPRGMVE 260 (640)
Q Consensus 187 I---NPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g---~aIRIGvNhGSLs~ril~ryGdtp~gMVe 260 (640)
+ ||..+-+ ++++..++.+ ..+-||+-|| |++++.+.+-. .=++
T Consensus 242 ~~~~~p~~i~~---------------------------ell~~l~~~~~~~~~v~lglQSg--sd~vLk~m~R~--~t~e 290 (459)
T PRK14338 242 FLTSHPAWMTD---------------------------RLIHAVARLPKCCPHINLPVQAG--DDEVLKRMRRG--YTVA 290 (459)
T ss_pred EEecChhhcCH---------------------------HHHHHHhcccccccceecCcccC--CHHHHHhccCC--CCHH
Confidence 3 5655532 1334444432 2455666665 68888888621 0134
Q ss_pred HHHHHHHHHHHCCCCcEEEE--EEeCChhhHHHHHHHHHHHHHHcCCCc
Q 006566 261 SAFEFARICRKLDFHNFLFS--MKASNPVVMVQAYRLLVAEMYVHGWDY 307 (640)
Q Consensus 261 SAle~~~i~e~~~F~diviS--mKsSn~~~mV~AyRlL~~~m~~~g~dy 307 (640)
..++.++.+++. +.++.++ +=.--|-.+.+.++...+.+.+.+.++
T Consensus 291 ~~~~~i~~lr~~-~pgi~i~~d~IvG~PgET~ed~~~ti~~l~~l~~~~ 338 (459)
T PRK14338 291 RYRELIARIREA-IPDVSLTTDIIVGHPGETEEQFQRTYDLLEEIRFDK 338 (459)
T ss_pred HHHHHHHHHHHh-CCCCEEEEEEEEECCCCCHHHHHHHHHHHHHcCCCE
Confidence 556666667676 2333222 112224566666777666666666553
No 377
>PRK15452 putative protease; Provisional
Probab=46.56 E-value=2.2e+02 Score=32.41 Aligned_cols=137 Identities=13% Similarity=0.128 Sum_probs=87.6
Q ss_pred HHHHHHHhhh-cCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHH
Q 006566 172 PSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSY 250 (640)
Q Consensus 172 ~~~Al~Aa~~-v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~r 250 (640)
+.-+..|+++ +|.|=+-...|+-+.+ ...++.+ .+++.|+.|+++|+.+-+-+| .+..
T Consensus 13 ~e~l~aAi~~GADaVY~G~~~~~~R~~---~~~f~~e-----------dl~eav~~ah~~g~kvyvt~n--~i~~----- 71 (443)
T PRK15452 13 LKNMRYAFAYGADAVYAGQPRYSLRVR---NNEFNHE-----------NLALGINEAHALGKKFYVVVN--IAPH----- 71 (443)
T ss_pred HHHHHHHHHCCCCEEEECCCccchhhh---ccCCCHH-----------HHHHHHHHHHHcCCEEEEEec--CcCC-----
Confidence 4556677888 9999997766665432 1122222 267789999999999999998 3322
Q ss_pred hCCChHHHHHHHHHHHHHHHHCCCCcEEEEEEeCChhhHHHHHHHHHHHHHHcCCCcceEEEeecCCCCCcceeehHHHH
Q 006566 251 YGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGI 330 (640)
Q Consensus 251 yGdtp~gMVeSAle~~~i~e~~~F~diviSmKsSn~~~mV~AyRlL~~~m~~~g~dyPLHLGVTEAG~gedGrIKSAiGI 330 (640)
+.-.+...++++-+.+.|.+-|+++ |+- ..+++-+. ..+.|+|+.. .--|-.+.++
T Consensus 72 -----e~el~~~~~~l~~l~~~gvDgvIV~----d~G----~l~~~ke~----~p~l~ih~st-------qlni~N~~a~ 127 (443)
T PRK15452 72 -----NAKLKTFIRDLEPVIAMKPDALIMS----DPG----LIMMVREH----FPEMPIHLSV-------QANAVNWATV 127 (443)
T ss_pred -----HHHHHHHHHHHHHHHhCCCCEEEEc----CHH----HHHHHHHh----CCCCeEEEEe-------cccCCCHHHH
Confidence 2335667788888889999998886 533 33333333 3468999875 2345666777
Q ss_pred HHHhhhcCCcEEEeecCCCCchhhH
Q 006566 331 GTLLQDGLGDTIRVSLTEPPEKEID 355 (640)
Q Consensus 331 G~LL~DGIGDTIRVSLTedP~~Ei~ 355 (640)
=.+..-|+ +.+-+|. |-..+||.
T Consensus 128 ~f~~~lG~-~rvvLSr-ELsl~EI~ 150 (443)
T PRK15452 128 KFWQQMGL-TRVILSR-ELSLEEIE 150 (443)
T ss_pred HHHHHCCC-cEEEECC-cCCHHHHH
Confidence 77776666 4444332 22345553
No 378
>cd06828 PLPDE_III_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase. Diaminopimelate decarboxylase (DapDC, EC 4.1.1.20) participates in the last step of lysine biosynthesis. It converts meso-2,6-diaminoheptanedioate to L-lysine. It is a fold type III PLP-dependent enzyme that contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. DapDC exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=46.20 E-value=4e+02 Score=28.44 Aligned_cols=31 Identities=29% Similarity=0.335 Sum_probs=24.2
Q ss_pred HHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHH
Q 006566 122 EEVMRIADQGADLVRITVQGKREADACFEIKNS 154 (640)
Q Consensus 122 ~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~ 154 (640)
+++..+.+.| ++.+++.+.++++.+.++.++
T Consensus 85 ~~l~~a~~~g--~~~~~ids~~el~~l~~~a~~ 115 (373)
T cd06828 85 EELELALELG--ILRINVDSLSELERLGEIAPE 115 (373)
T ss_pred HHHHHHHHcC--CeEEEECCHHHHHHHHHHHHh
Confidence 5677777777 478888899888888887764
No 379
>PRK13191 putative peroxiredoxin; Provisional
Probab=46.12 E-value=47 Score=33.70 Aligned_cols=57 Identities=14% Similarity=0.179 Sum_probs=41.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHH-HHHHHhhcCCCCcceeeccC
Q 006566 112 NDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACF-EIKNSLVQKNYNIPLVADIH 169 (640)
Q Consensus 112 t~T~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~A~~l~-~I~~~L~~~g~~iPLVADIH 169 (640)
.-|+.+.+-.+...++.+.||+++-|++.+.....+.. .+++.+ ..+.+.|+++|.+
T Consensus 48 vC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~-~~~i~fPllsD~~ 105 (215)
T PRK13191 48 VCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNL-KVEVPFPIIADPM 105 (215)
T ss_pred cCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhc-CCCCceEEEECCc
Confidence 44555666666777888899999999999987765544 455532 2268899999965
No 380
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=45.99 E-value=1.5e+02 Score=30.79 Aligned_cols=161 Identities=16% Similarity=0.256 Sum_probs=112.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCCC-cceeeccCCCHHHHHHHhhhcCceeeCCCCCC
Q 006566 115 KDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYN-IPLVADIHFAPSVALRVAECFDKIRVNPGNFA 193 (640)
Q Consensus 115 ~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~-iPLVADIHF~~~~Al~Aa~~v~KVRINPGN~~ 193 (640)
.|.+.++..+..|++.|-+.+=||..+....++++.++++ ++ +=+=|=-=.||.-+..|+++=.+.=+-||=
T Consensus 22 ~~~e~a~~~a~Ali~gGi~~IEITl~sp~a~e~I~~l~~~-----~p~~lIGAGTVL~~~q~~~a~~aGa~fiVsP~~-- 94 (211)
T COG0800 22 DDVEEALPLAKALIEGGIPAIEITLRTPAALEAIRALAKE-----FPEALIGAGTVLNPEQARQAIAAGAQFIVSPGL-- 94 (211)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHh-----CcccEEccccccCHHHHHHHHHcCCCEEECCCC--
Confidence 5789999999999999999999999999999999999996 33 223344568899999998884445567752
Q ss_pred chhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCCChHHHHHHHHHHHHHHHHCC
Q 006566 194 DRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLD 273 (640)
Q Consensus 194 d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGdtp~gMVeSAle~~~i~e~~~ 273 (640)
+ .++++.|.++|+|+=-|+ -||-.+ -.+.++|
T Consensus 95 ~--------------------------~ev~~~a~~~~ip~~PG~--------------~TptEi--------~~Ale~G 126 (211)
T COG0800 95 N--------------------------PEVAKAANRYGIPYIPGV--------------ATPTEI--------MAALELG 126 (211)
T ss_pred C--------------------------HHHHHHHHhCCCcccCCC--------------CCHHHH--------HHHHHcC
Confidence 1 358999999999996666 366322 2234567
Q ss_pred CCcEEE-EEEeCChhhHHHHHHHHHHHHHHcCCCcceEEEeecCCCCCcceeehHHHHHHHhhhcCCcEE
Q 006566 274 FHNFLF-SMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTI 342 (640)
Q Consensus 274 F~divi-SmKsSn~~~mV~AyRlL~~~m~~~g~dyPLHLGVTEAG~gedGrIKSAiGIG~LL~DGIGDTI 342 (640)
++-++| ...++-..-|+++.. -.|| |+=+-=.|.-..--++.-...| .++.|+|--+
T Consensus 127 ~~~lK~FPa~~~Gg~~~~ka~~----------gP~~-~v~~~pTGGVs~~N~~~yla~g-v~avG~Gs~l 184 (211)
T COG0800 127 ASALKFFPAEVVGGPAMLKALA----------GPFP-QVRFCPTGGVSLDNAADYLAAG-VVAVGLGSWL 184 (211)
T ss_pred hhheeecCccccCcHHHHHHHc----------CCCC-CCeEeecCCCCHHHHHHHHhCC-ceEEecCccc
Confidence 777654 444443444543321 2233 3433334555555788888888 8888888654
No 381
>PLN00191 enolase
Probab=45.94 E-value=70 Score=36.46 Aligned_cols=99 Identities=12% Similarity=0.075 Sum_probs=71.3
Q ss_pred CCCHHHHHHHHHHHHH-cCCCEEEEecCC-HHHHHHHHHHHHHhhcCCCCcceeecc--CCCHHHHHHHhhh--cCceee
Q 006566 114 TKDVAGTVEEVMRIAD-QGADLVRITVQG-KREADACFEIKNSLVQKNYNIPLVADI--HFAPSVALRVAEC--FDKIRV 187 (640)
Q Consensus 114 T~Dv~atv~Qi~rl~~-aGceiVRvtvp~-~~~A~~l~~I~~~L~~~g~~iPLVADI--HF~~~~Al~Aa~~--v~KVRI 187 (640)
..+.+..++=...|.+ .+ |+=|-=|= .++-+.+.+++++ ..+||++|= ..+|+-+..+++. ++-|-|
T Consensus 294 ~~s~~e~i~~~~~L~~~y~--I~~IEDPl~~~D~eg~~~Lt~~-----~~ipIvgDE~~vtn~~~l~~~I~~~aad~i~i 366 (457)
T PLN00191 294 KKSGDELIDLYKEFVSDYP--IVSIEDPFDQDDWEHWAKLTSL-----EDVQIVGDDLLVTNPKRVAKAIQEKACNALLL 366 (457)
T ss_pred ccCHHHHHHHHHHHhhcCC--cEEEECCCCcccHHHHHHHHcc-----CCCcEEccCcccCCHHHHHHHHHhCCCCEEEe
Confidence 3567777777777665 34 43333332 2456777777763 789999964 3679888888875 999999
Q ss_pred CCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCC
Q 006566 188 NPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSL 243 (640)
Q Consensus 188 NPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSL 243 (640)
-|..+|.-.+ ..++++.|+++|+++=|| |+|.
T Consensus 367 Kl~qiGGITe----------------------a~~~a~lA~~~G~~~~is--hrsg 398 (457)
T PLN00191 367 KVNQIGTVTE----------------------SIEAVKMSKAAGWGVMTS--HRSG 398 (457)
T ss_pred cccccCCHHH----------------------HHHHHHHHHHCCCEEEeC--CCCc
Confidence 9999998443 677999999999988444 4444
No 382
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=45.91 E-value=2.6e+02 Score=29.29 Aligned_cols=173 Identities=17% Similarity=0.192 Sum_probs=86.9
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCH-HHHHHHHHHHHHhh-cCCCC-cceeeccCCCHHHHHH----Hhhh-cCcee
Q 006566 115 KDVAGTVEEVMRIADQGADLVRITVQGK-READACFEIKNSLV-QKNYN-IPLVADIHFAPSVALR----VAEC-FDKIR 186 (640)
Q Consensus 115 ~Dv~atv~Qi~rl~~aGceiVRvtvp~~-~~A~~l~~I~~~L~-~~g~~-iPLVADIHF~~~~Al~----Aa~~-v~KVR 186 (640)
.+.+...+.+++|.+.|.|.|=||--.. .....--.+.+.|+ +.|++ +|=++-.++|...-.. +.+. ++.|=
T Consensus 12 ~~~~~l~~~~~~l~~~~pd~isvT~~~~~~~~~~t~~~a~~l~~~~g~~~i~Hlt~r~~n~~~l~~~L~~~~~~Gi~nvL 91 (272)
T TIGR00676 12 EGEENLWETVDRLSPLDPDFVSVTYGAGGSTRDRTVRIVRRIKKETGIPTVPHLTCIGATREEIREILREYRELGIRHIL 91 (272)
T ss_pred hhHHHHHHHHHHHhcCCCCEEEeccCCCCCcHHHHHHHHHHHHHhcCCCeeEEeeecCCCHHHHHHHHHHHHHCCCCEEE
Confidence 3468888999999999999999995422 11111223333344 23666 7777777776432221 1122 44333
Q ss_pred eCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCCChHH-HHHHHHHH
Q 006566 187 VNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRG-MVESAFEF 265 (640)
Q Consensus 187 INPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGdtp~g-MVeSAle~ 265 (640)
.==|........-..-.|.+ -.+||+..++.+-.++||+- |. +. | .|++ =.+. +.
T Consensus 92 ~l~GD~~~~~~~~~~~~f~~-------------a~~Li~~i~~~~~~f~ig~a-~~-Pe------g-hp~~~~~~~--~~ 147 (272)
T TIGR00676 92 ALRGDPPKGEGTPTPGGFNY-------------ASELVEFIRNEFGDFDIGVA-AY-PE------K-HPEAPNLEE--DI 147 (272)
T ss_pred EeCCCCCCCCCCCCCCCCCC-------------HHHHHHHHHHhcCCeeEEEE-eC-CC------C-CCCCCCHHH--HH
Confidence 22222211000000011211 23455555665446899972 10 00 0 0111 0111 22
Q ss_pred HHHHHHCCC-CcEEEEEEeCChhhHHHHHHHHHHHHHHcCCCcceEEEeec
Q 006566 266 ARICRKLDF-HNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTE 315 (640)
Q Consensus 266 ~~i~e~~~F-~diviSmKsSn~~~mV~AyRlL~~~m~~~g~dyPLHLGVTE 315 (640)
-++.+|.+. -++.++ .+.--.+++..+.+++.+.|++-|++.|+.=
T Consensus 148 ~~L~~K~~aGA~f~iT----Q~~fd~~~~~~~~~~~~~~gi~~PIi~Gi~p 194 (272)
T TIGR00676 148 ENLKRKVDAGADYAIT----QLFFDNDDYYRFVDRCRAAGIDVPIIPGIMP 194 (272)
T ss_pred HHHHHHHHcCCCeEee----ccccCHHHHHHHHHHHHHcCCCCCEecccCC
Confidence 234455543 234443 1122256777788888899999999999853
No 383
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=45.79 E-value=73 Score=34.88 Aligned_cols=77 Identities=5% Similarity=0.089 Sum_probs=56.1
Q ss_pred CCHHH-HHHHHHHHHHcCCCEEEEecCCHHH-----HHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhh--cCcee
Q 006566 115 KDVAG-TVEEVMRIADQGADLVRITVQGKRE-----ADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC--FDKIR 186 (640)
Q Consensus 115 ~Dv~a-tv~Qi~rl~~aGceiVRvtvp~~~~-----A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~--v~KVR 186 (640)
.+.+. +++-++.|.++|+|++=|+.++... ..--+.||+. +++|+++=--|+|..|..+++. +|-|=
T Consensus 245 ~~~~e~~~~~~~~L~~~giD~i~vs~~~~~~~~~~~~~~~~~ik~~-----~~~pv~~~G~~~~~~ae~~i~~G~~D~V~ 319 (362)
T PRK10605 245 PNEEADALYLIEQLGKRGIAYLHMSEPDWAGGEPYSDAFREKVRAR-----FHGVIIGAGAYTAEKAETLIGKGLIDAVA 319 (362)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEeccccccCCccccHHHHHHHHHH-----CCCCEEEeCCCCHHHHHHHHHcCCCCEEE
Confidence 45566 7888999999999999999875321 1122556664 7789988666899999999986 78877
Q ss_pred eCCCCCCchh
Q 006566 187 VNPGNFADRR 196 (640)
Q Consensus 187 INPGN~~d~~ 196 (640)
+-=.=++|+.
T Consensus 320 ~gR~~iadPd 329 (362)
T PRK10605 320 FGRDYIANPD 329 (362)
T ss_pred ECHHhhhCcc
Confidence 6555555543
No 384
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=45.67 E-value=2.6e+02 Score=30.02 Aligned_cols=146 Identities=18% Similarity=0.194 Sum_probs=77.2
Q ss_pred HHHHHHhhh-cCceeeCCCCC------CchhhhccccccchHHHHHHHhhhHhhHHHHHHHHH-HcCCeEEEeeCCCCCc
Q 006566 173 SVALRVAEC-FDKIRVNPGNF------ADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCK-KYGRAVRIGTNHGSLS 244 (640)
Q Consensus 173 ~~Al~Aa~~-v~KVRINPGN~------~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~K-e~g~aIRIGvNhGSLs 244 (640)
..|..|.++ +|.|=||-|+= -++...-..-+|- -....-.+...|.++.+-+.+- +.-+.+||..+- .
T Consensus 158 ~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yG-gsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~--~- 233 (336)
T cd02932 158 AAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYG-GSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATD--W- 233 (336)
T ss_pred HHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccC-CCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccc--c-
Confidence 566677777 99999998761 1111000011121 1122233333343333333331 223445554321 0
Q ss_pred HhHHHHhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEEe--CC------hhhHHHHHHHHHHHHHHcCCCcceEEEeecC
Q 006566 245 DRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKA--SN------PVVMVQAYRLLVAEMYVHGWDYPLHLGVTEA 316 (640)
Q Consensus 245 ~ril~ryGdtp~gMVeSAle~~~i~e~~~F~diviSmKs--Sn------~~~mV~AyRlL~~~m~~~g~dyPLHLGVTEA 316 (640)
...|-+ .+.++++++.+++.|.+-+-+|.-. .. .......++.+.+. ++.|+-.
T Consensus 234 ----~~~g~~----~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~~-----~~iPVi~----- 295 (336)
T cd02932 234 ----VEGGWD----LEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQE-----AGIPVIA----- 295 (336)
T ss_pred ----CCCCCC----HHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHHHHhh-----CCCCEEE-----
Confidence 011223 4678899999999998766665211 11 01123444444444 5778642
Q ss_pred CCCCcceeehHHHHHHHhhhcCCcEEEe
Q 006566 317 GEGEDGRMKSAIGIGTLLQDGLGDTIRV 344 (640)
Q Consensus 317 G~gedGrIKSAiGIG~LL~DGIGDTIRV 344 (640)
.|.|.+.-..=.+|.+|--|-|.+
T Consensus 296 ----~G~i~t~~~a~~~l~~g~aD~V~~ 319 (336)
T cd02932 296 ----VGLITDPEQAEAILESGRADLVAL 319 (336)
T ss_pred ----eCCCCCHHHHHHHHHcCCCCeehh
Confidence 367888888888999998888654
No 385
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=45.61 E-value=1.3e+02 Score=31.97 Aligned_cols=155 Identities=21% Similarity=0.272 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHc---CCCEEEEecCCHHHHHHHHHHHHHhhcC-CCCcceeeccCCCHHHHHHHhhh--cCceeeCCCC
Q 006566 118 AGTVEEVMRIADQ---GADLVRITVQGKREADACFEIKNSLVQK-NYNIPLVADIHFAPSVALRVAEC--FDKIRVNPGN 191 (640)
Q Consensus 118 ~atv~Qi~rl~~a---GceiVRvtvp~~~~A~~l~~I~~~L~~~-g~~iPLVADIHF~~~~Al~Aa~~--v~KVRINPGN 191 (640)
+.|++.|.+-..+ +.+ ||.+.-| .-|+++|+++ |+++|- |.-||..+.. +..|-|.|-.
T Consensus 17 ~~ti~~ie~~~~~~fp~~~-V~~AfTS-------~~I~~kl~~~~g~~i~~-------~~eaL~~L~~~G~~~V~VQplh 81 (262)
T PF06180_consen 17 EKTIDAIEKAVREAFPDYD-VRRAFTS-------RIIRKKLAERDGIKIDS-------PEEALAKLADEGYTEVVVQPLH 81 (262)
T ss_dssp HHHHHHHHHHHHHCSTTSE-EEEEES--------HHHHHHHHHCHT------------HHHHHHHHHHCT--EEEEEE--
T ss_pred HHHHHHHHHHHHHHCCCCc-EEEEchH-------HHHHHHHHhcCCCCcCC-------HHHHHHHHHHCCCCEEEEeecc
Confidence 3355555554433 444 5555544 3567788888 877764 7778877766 9999999999
Q ss_pred CCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCC--ChHHHHHHHHHHHHHH
Q 006566 192 FADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGD--SPRGMVESAFEFARIC 269 (640)
Q Consensus 192 ~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGd--tp~gMVeSAle~~~i~ 269 (640)
+..+.. |. ++...|+..+..-..|+||- =+|..+|. .+ +...+.++.+
T Consensus 82 iipG~E-----------y~--------~l~~~v~~~~~~F~~i~~g~-------PLL~~~g~~~~~----~D~~~va~aL 131 (262)
T PF06180_consen 82 IIPGEE-----------YE--------KLRATVEAYKHDFKKIVLGR-------PLLYTMGQENSP----EDYEAVAEAL 131 (262)
T ss_dssp SCSSHH-----------HH--------HHHHHHHHHCCCSSEEEEE---------SCSS-----SH----HHHHHHHHHH
T ss_pred eeCcHh-----------HH--------HHHHHHHHhhccCCeEEecc-------cccccccccCCh----HHHHHHHHHH
Confidence 998663 22 12223344444445777775 12333332 22 2223333433
Q ss_pred HHC----CCCcEEEEEEeCChhhHHHHHHHHHHHHHHcCCCcc-eEEEeecCCCC
Q 006566 270 RKL----DFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYP-LHLGVTEAGEG 319 (640)
Q Consensus 270 e~~----~F~diviSmKsSn~~~mV~AyRlL~~~m~~~g~dyP-LHLGVTEAG~g 319 (640)
.+. .=+..++=|=-=+..---.+|..|-..|.+ .+|| .|+|..|..+.
T Consensus 132 ~~~~~~~~~~~a~vlmGHGt~h~an~~Y~~l~~~l~~--~~~~~v~vgtvEG~P~ 184 (262)
T PF06180_consen 132 AEEFPKKRKDEAVVLMGHGTPHPANAAYSALQAMLKK--HGYPNVFVGTVEGYPS 184 (262)
T ss_dssp HCCS-TT-TTEEEEEEE---SCHHHHHHHHHHHHHHC--CT-TTEEEEETTSSSB
T ss_pred HHhccccCCCCEEEEEeCCCCCCccHHHHHHHHHHHh--CCCCeEEEEEeCCCCC
Confidence 332 124666666654444456689999888876 4466 89999995433
No 386
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=45.49 E-value=1.6e+02 Score=30.00 Aligned_cols=113 Identities=16% Similarity=0.201 Sum_probs=79.3
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhhcCceeeCCCCCC
Q 006566 114 TKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFA 193 (640)
Q Consensus 114 T~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~v~KVRINPGN~~ 193 (640)
..|.+.+++.++.|.+.|...+=||..+....+.++.++++.- ++=+=|=-=.++.-|..|+++=.+.=+-|+ +
T Consensus 16 ~~~~~~a~~~~~al~~gGi~~iEiT~~t~~a~~~I~~l~~~~p----~~~vGAGTV~~~e~a~~a~~aGA~FivSP~-~- 89 (196)
T PF01081_consen 16 GDDPEDAVPIAEALIEGGIRAIEITLRTPNALEAIEALRKEFP----DLLVGAGTVLTAEQAEAAIAAGAQFIVSPG-F- 89 (196)
T ss_dssp TSSGGGHHHHHHHHHHTT--EEEEETTSTTHHHHHHHHHHHHT----TSEEEEES--SHHHHHHHHHHT-SEEEESS---
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEecCCccHHHHHHHHHHHCC----CCeeEEEeccCHHHHHHHHHcCCCEEECCC-C-
Confidence 3567888999999999999999999999999999999998621 133334455789999999888444557774 3
Q ss_pred chhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCCChHHHHHHHHHHHHHHHHCC
Q 006566 194 DRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLD 273 (640)
Q Consensus 194 d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGdtp~gMVeSAle~~~i~e~~~ 273 (640)
+ .++++.|+++|++.==|+ -||.. +.-+.++|
T Consensus 90 ~--------------------------~~v~~~~~~~~i~~iPG~--------------~TptE--------i~~A~~~G 121 (196)
T PF01081_consen 90 D--------------------------PEVIEYAREYGIPYIPGV--------------MTPTE--------IMQALEAG 121 (196)
T ss_dssp ---------------------------HHHHHHHHHHTSEEEEEE--------------SSHHH--------HHHHHHTT
T ss_pred C--------------------------HHHHHHHHHcCCcccCCc--------------CCHHH--------HHHHHHCC
Confidence 2 358999999999997777 36633 23345678
Q ss_pred CCcEEEE
Q 006566 274 FHNFLFS 280 (640)
Q Consensus 274 F~diviS 280 (640)
++-+++-
T Consensus 122 ~~~vK~F 128 (196)
T PF01081_consen 122 ADIVKLF 128 (196)
T ss_dssp -SEEEET
T ss_pred CCEEEEe
Confidence 8766654
No 387
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=45.49 E-value=4.2e+02 Score=30.66 Aligned_cols=137 Identities=15% Similarity=0.179 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCCHHH---HHHHHHHHHHhhcCCCCcceeeccC-------CCH--HHHHHHhhhcCc
Q 006566 117 VAGTVEEVMRIADQGADLVRITVQGKRE---ADACFEIKNSLVQKNYNIPLVADIH-------FAP--SVALRVAECFDK 184 (640)
Q Consensus 117 v~atv~Qi~rl~~aGceiVRvtvp~~~~---A~~l~~I~~~L~~~g~~iPLVADIH-------F~~--~~Al~Aa~~v~K 184 (640)
.+..+.|+++....|||+|=+-+.-.++ .+.+.++.+ ..++|++.=+- |.- ..-.+-.+. .
T Consensus 34 ~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~~~~~~~-----~~~~plI~T~R~~~eGG~~~~~~~~~~~ll~~--~ 106 (529)
T PLN02520 34 VDKMLIEMAKAKELGADLVEIRLDFLKNFNPREDLKTLIK-----QSPLPTLVTYRPKWEGGQYEGDENKRQDALRL--A 106 (529)
T ss_pred HHHHHHHHHHhhhcCCCEEEEEeccccccCCHHHHHHHHh-----cCCCcEEEEeccHHHCCCCCCCHHHHHHHHHH--H
Confidence 7888999999999999998666554433 344444443 35788886421 110 000000000 0
Q ss_pred eeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCCChHHHHHHHHH
Q 006566 185 IRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFE 264 (640)
Q Consensus 185 VRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGdtp~gMVeSAle 264 (640)
++.+| .|. .+|++ . .+++.+++..+|+.|+.+ |.-+| .|..||. .+...+
T Consensus 107 ~~~~~-d~i-------DiEl~---------~-~~~~~~~~~~~~~~~~~v-I~S~H---------~f~~tP~--~~el~~ 156 (529)
T PLN02520 107 MELGA-DYV-------DVELK---------V-AHEFINSISGKKPEKCKV-IVSSH---------NYENTPS--VEELGN 156 (529)
T ss_pred HHhCC-CEE-------EEEcC---------C-chhHHHHHHhhhhcCCEE-EEEec---------CCCCCCC--HHHHHH
Confidence 11121 111 12211 1 124566778888777765 55555 1234664 234456
Q ss_pred HHHHHHHCCCCcEEEEEEeCChhhHH
Q 006566 265 FARICRKLDFHNFLFSMKASNPVVMV 290 (640)
Q Consensus 265 ~~~i~e~~~F~diviSmKsSn~~~mV 290 (640)
.++-+++.|-+=++|-..+.+.....
T Consensus 157 ~~~~~~~~gaDi~Kia~~~~~~~D~~ 182 (529)
T PLN02520 157 LVARIQATGADIVKIATTALDITDVA 182 (529)
T ss_pred HHHHHHHhCCCEEEEecCCCCHHHHH
Confidence 77777888866666666666654433
No 388
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=45.39 E-value=1.4e+02 Score=29.59 Aligned_cols=64 Identities=16% Similarity=0.201 Sum_probs=45.4
Q ss_pred HHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhh-cCceeeCC
Q 006566 122 EEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNP 189 (640)
Q Consensus 122 ~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~-v~KVRINP 189 (640)
.|+..+.++||+.|=+-.++... +.++++.+.... +.+-.++++| ++.-+..+.+. ++-|=+|+
T Consensus 85 ~~v~~~~~~Gad~v~l~~~~~~~-~~~~~~~~~~~~--~g~~~~v~v~-~~~e~~~~~~~g~~~i~~t~ 149 (217)
T cd00331 85 YQIYEARAAGADAVLLIVAALDD-EQLKELYELARE--LGMEVLVEVH-DEEELERALALGAKIIGINN 149 (217)
T ss_pred HHHHHHHHcCCCEEEEeeccCCH-HHHHHHHHHHHH--cCCeEEEEEC-CHHHHHHHHHcCCCEEEEeC
Confidence 48999999999999876655554 445555444433 4555589998 88878888877 77776773
No 389
>PRK01362 putative translaldolase; Provisional
Probab=45.07 E-value=2.7e+02 Score=28.68 Aligned_cols=81 Identities=17% Similarity=0.254 Sum_probs=61.0
Q ss_pred CceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhh
Q 006566 102 HPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC 181 (640)
Q Consensus 102 ~PI~VQSMt~t~T~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~ 181 (640)
-||.+|-. -.|.++.++|.++|.+.+-. +=|-+|--.+ -++.|++ |.++|+++.+=+ =|++.=|+.|++.
T Consensus 52 g~vs~qv~----~~d~~~m~~~a~~l~~~~~~-i~iKIP~T~~--G~~a~~~-L~~~Gi~v~~T~--vfs~~Qa~~Aa~a 121 (214)
T PRK01362 52 GPVSAEVI----ALDAEGMIKEGRELAKIAPN-VVVKIPMTPE--GLKAVKA-LSKEGIKTNVTL--IFSANQALLAAKA 121 (214)
T ss_pred CCEEEEEe----eCCHHHHHHHHHHHHHhCCC-EEEEeCCCHH--HHHHHHH-HHHCCCceEEee--ecCHHHHHHHHhc
Confidence 48999975 57999999999999999865 4567786663 4776664 777788776655 6999999999998
Q ss_pred -cCceeeCCCCC
Q 006566 182 -FDKIRVNPGNF 192 (640)
Q Consensus 182 -v~KVRINPGN~ 192 (640)
++=|-+.=|=+
T Consensus 122 Ga~yispyvgRi 133 (214)
T PRK01362 122 GATYVSPFVGRL 133 (214)
T ss_pred CCcEEEeecchH
Confidence 76555444444
No 390
>cd06841 PLPDE_III_MccE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme MccE. This subfamily is composed of uncharacterized proteins with similarity to Escherichia coli MccE, a hypothetical protein that is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Most members of this subfamily share the same domain architecture as ODC and DapDC. A few members, including Escherichia coli MccE, contain an additional acetyltransferase domain at the C-terminus.
Probab=45.06 E-value=2.3e+02 Score=30.64 Aligned_cols=79 Identities=18% Similarity=0.245 Sum_probs=38.7
Q ss_pred HHHHHHHHHcCC----eEEEeeCCCCCcHhHHHHhCCChHHHHHHHHHHHHHHHHC-C--CCcEEEEEEeC--ChhhHHH
Q 006566 221 SPLVEKCKKYGR----AVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKL-D--FHNFLFSMKAS--NPVVMVQ 291 (640)
Q Consensus 221 ~~lV~~~Ke~g~----aIRIGvNhGSLs~ril~ryGdtp~gMVeSAle~~~i~e~~-~--F~diviSmKsS--n~~~mV~ 291 (640)
..+.+.|++++. -|||-++.|+- .|+|+|-+++. +..+++.++-..++ + +.=+-+-+-|- |+....+
T Consensus 112 ~~l~~~~~~~~~~~~v~lRv~~~~g~~---~~~rfGi~~~e-~~~~~~~~~~~~~~~~l~~~Glh~H~gs~~~~~~~~~~ 187 (379)
T cd06841 112 ERILEIAKELGRVAKVGIRLNMNYGNN---VWSRFGFDIEE-NGEALAALKKIQESKNLSLVGLHCHVGSNILNPEAYSA 187 (379)
T ss_pred HHHHHHHHhcCCcceEEEEECCCCCCC---CCCCCCCchhh-hHHHHHHHHHhhcCCCeeEEEEEecCCCccCChHHHHH
Confidence 334455555544 45555554543 58899976632 22334444433222 2 22222222232 4556667
Q ss_pred HHHHHHHHHHHc
Q 006566 292 AYRLLVAEMYVH 303 (640)
Q Consensus 292 AyRlL~~~m~~~ 303 (640)
+.+.+.+...+.
T Consensus 188 ~~~~~~~~~~~~ 199 (379)
T cd06841 188 AAKKLIELLDRL 199 (379)
T ss_pred HHHHHHHHHHHh
Confidence 777766665544
No 391
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=44.91 E-value=24 Score=36.32 Aligned_cols=17 Identities=24% Similarity=0.237 Sum_probs=15.0
Q ss_pred HHHHHHHHHHcCCeEEE
Q 006566 220 FSPLVEKCKKYGRAVRI 236 (640)
Q Consensus 220 f~~lV~~~Ke~g~aIRI 236 (640)
|+++++.|||+++|.=|
T Consensus 78 fKef~e~ike~di~fiV 94 (220)
T COG4359 78 FKEFVEWIKEHDIPFIV 94 (220)
T ss_pred HHHHHHHHHHcCCCEEE
Confidence 88999999999999833
No 392
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=44.88 E-value=5.3e+02 Score=29.49 Aligned_cols=155 Identities=14% Similarity=0.129 Sum_probs=90.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEe----------cCCHHHHHHHHHHHHHhhcCCCCccee--e-------ccCCC----
Q 006566 115 KDVAGTVEEVMRIADQGADLVRIT----------VQGKREADACFEIKNSLVQKNYNIPLV--A-------DIHFA---- 171 (640)
Q Consensus 115 ~Dv~atv~Qi~rl~~aGceiVRvt----------vp~~~~A~~l~~I~~~L~~~g~~iPLV--A-------DIHF~---- 171 (640)
..++.-++=+..|.++|.+.+=++ .-+.++.+.++.|++.+ -++++. + =-|+.
T Consensus 23 ~~t~dkl~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~e~p~e~l~~l~~~~----~~~~l~~l~r~~N~~G~~~~pddvv 98 (448)
T PRK12331 23 MTTEEMLPILEKLDNAGYHSLEMWGGATFDACLRFLNEDPWERLRKIRKAV----KKTKLQMLLRGQNLLGYRNYADDVV 98 (448)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEecCCccchhhhccCCCCHHHHHHHHHHhC----CCCEEEEEeccccccccccCchhhH
Confidence 445667777888999999999875 13556788999998752 235543 2 11221
Q ss_pred HHHHHHHhhh-cCceeeC-CCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHH
Q 006566 172 PSVALRVAEC-FDKIRVN-PGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMS 249 (640)
Q Consensus 172 ~~~Al~Aa~~-v~KVRIN-PGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ 249 (640)
......|+++ ++-|||- |-|-. ..+.+.|+.||++|.-++..+.. +.+.+
T Consensus 99 ~~~v~~A~~~Gvd~irif~~lnd~------------------------~n~~~~v~~ak~~G~~v~~~i~~-t~~p~--- 150 (448)
T PRK12331 99 ESFVQKSVENGIDIIRIFDALNDV------------------------RNLETAVKATKKAGGHAQVAISY-TTSPV--- 150 (448)
T ss_pred HHHHHHHHHCCCCEEEEEEecCcH------------------------HHHHHHHHHHHHcCCeEEEEEEe-ecCCC---
Confidence 1223456677 8888862 11111 13666899999999876644311 11111
Q ss_pred HhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEEeCChhhHHHHHHHHHHHHHHcCCCcceEE
Q 006566 250 YYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHL 311 (640)
Q Consensus 250 ryGdtp~gMVeSAle~~~i~e~~~F~diviSmKsSn~~~mV~AyRlL~~~m~~~g~dyPLHL 311 (640)
.+++-.+ +.++-+++.|-+ .|++|-+-=...=+..+.|+..+.++ ++-|+|+
T Consensus 151 ---~~~~~~~----~~a~~l~~~Gad--~I~i~Dt~G~l~P~~v~~lv~alk~~-~~~pi~~ 202 (448)
T PRK12331 151 ---HTIDYFV----KLAKEMQEMGAD--SICIKDMAGILTPYVAYELVKRIKEA-VTVPLEV 202 (448)
T ss_pred ---CCHHHHH----HHHHHHHHcCCC--EEEEcCCCCCCCHHHHHHHHHHHHHh-cCCeEEE
Confidence 2454444 455556777876 57778765444444444455555433 4567765
No 393
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=44.79 E-value=3e+02 Score=31.82 Aligned_cols=179 Identities=20% Similarity=0.245 Sum_probs=107.5
Q ss_pred EEEceeecCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEe-cCCHHHHHHHHHHHHHhhcCCCCcceeeccC
Q 006566 91 VMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRIT-VQGKREADACFEIKNSLVQKNYNIPLVADIH 169 (640)
Q Consensus 91 V~VG~v~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~rl~~aGceiVRvt-vp~~~~A~~l~~I~~~L~~~g~~iPLVADIH 169 (640)
|..|+. +++...|-+.--.-.-..=++.-.+-++-..+.|+|+|=++ |.+ |+.+.++|+.|.+.+..++++|=|-
T Consensus 148 v~~~G~-l~~~kgin~p~~~~~~p~ltekD~~di~f~~~~~vD~ia~SFV~~---~~di~~~r~~l~~~~~~~~iiakIE 223 (480)
T cd00288 148 VLNGGV-LGSRKGVNLPGTDVDLPALSEKDKADLRFGVEQGVDMIFASFVRK---ASDVLEIREVLGEKGKDIKIIAKIE 223 (480)
T ss_pred EEeCeE-EcCCCceEeeCcccCCCCCCHHHHHHHHHHHHcCCCEEEECCCCC---HHHHHHHHHHHHhcCCCceEEEEEC
Confidence 333443 35666666653211111113444445666678899998776 555 4555555555666677899999883
Q ss_pred CCHHHHHHHh----hhcCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcH
Q 006566 170 FAPSVALRVA----ECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSD 245 (640)
Q Consensus 170 F~~~~Al~Aa----~~v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ 245 (640)
-.-|++-+ +.+|.|=|-||.++-.-. .+++.+..+.+++.|+++|+|+=+.|
T Consensus 224 --t~~av~nldeI~~~~DgImIargDLg~e~g---------------~~~v~~~qk~ii~~~~~~gkpvi~AT------- 279 (480)
T cd00288 224 --NQEGVNNFDEILEASDGIMVARGDLGVEIP---------------AEEVFLAQKMLIAKCNLAGKPVITAT------- 279 (480)
T ss_pred --CHHHHHhHHHHHHhcCEEEECcchhhhhcC---------------hHHHHHHHHHHHHHHHHcCCCEEEEc-------
Confidence 23333222 238999999999986221 35566677889999999999994444
Q ss_pred hHHHHhC--CChHHHHHHHHHHHHHHH--HCCCCcEEEEEEe---CChhhHHHHHHHHHHHHHH
Q 006566 246 RIMSYYG--DSPRGMVESAFEFARICR--KLDFHNFLFSMKA---SNPVVMVQAYRLLVAEMYV 302 (640)
Q Consensus 246 ril~ryG--dtp~gMVeSAle~~~i~e--~~~F~diviSmKs---Sn~~~mV~AyRlL~~~m~~ 302 (640)
.+|+..= ..|- =-|--++.. .-|.+-+.+|--+ ..|...|+..+.++++.++
T Consensus 280 qmLeSM~~~p~PT-----RAEvtDVanav~dG~D~vmLS~ETa~G~yPveaV~~m~~I~~~aE~ 338 (480)
T cd00288 280 QMLESMIYNPRPT-----RAEVSDVANAVLDGTDCVMLSGETAKGKYPVEAVKAMARICLEAEK 338 (480)
T ss_pred hhHHHHhhCCCCC-----chhhHHHHHHHHhCCcEEEEechhcCCCCHHHHHHHHHHHHHHHHh
Confidence 2222211 1110 013334433 3489999998655 5677778888887777554
No 394
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=44.67 E-value=2.7e+02 Score=29.88 Aligned_cols=48 Identities=17% Similarity=0.215 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHcCCCEEEEecC-----CHHHH-----HHHHHHHHHhhcCCCCccee
Q 006566 118 AGTVEEVMRIADQGADLVRITVQ-----GKREA-----DACFEIKNSLVQKNYNIPLV 165 (640)
Q Consensus 118 ~atv~Qi~rl~~aGceiVRvtvp-----~~~~A-----~~l~~I~~~L~~~g~~iPLV 165 (640)
+.+++.++.+.++|++++=+.=| +.+.- .-+++|.+.+.+.|-.+|++
T Consensus 186 ~~~~~~~~~~~eaGad~i~i~d~~~~~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~il 243 (346)
T PRK00115 186 DATIAYLNAQIEAGAQAVQIFDSWAGALSPADYREFVLPYMKRIVAELKREHPDVPVI 243 (346)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEE
Confidence 34566777788999999866533 22332 33456666665553235554
No 395
>PLN02540 methylenetetrahydrofolate reductase
Probab=44.64 E-value=6.1e+02 Score=30.12 Aligned_cols=155 Identities=15% Similarity=0.173 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHc-CCC-EEEEecCCHHHHHHHHHHHHHhhcCCCC--------cceeec------cCCCHHHHHHHhhh
Q 006566 118 AGTVEEVMRIADQ-GAD-LVRITVQGKREADACFEIKNSLVQKNYN--------IPLVAD------IHFAPSVALRVAEC 181 (640)
Q Consensus 118 ~atv~Qi~rl~~a-Gce-iVRvtvp~~~~A~~l~~I~~~L~~~g~~--------iPLVAD------IHF~~~~Al~Aa~~ 181 (640)
+.|++=+..|.+. |.+ +.=+|+-++... .|...-.++.+.|+. -|--.| --|++ |..-+++
T Consensus 44 ~~Tl~la~~lq~~~Gie~i~HLTCrd~n~~-~L~~~L~~a~~~GIrNILALrGDpp~~~d~~~~~~g~F~~--A~dLV~~ 120 (565)
T PLN02540 44 DLTLDIANRMQNMICVETMMHLTCTNMPVE-KIDHALETIKSNGIQNILALRGDPPHGQDKFVQVEGGFAC--ALDLVKH 120 (565)
T ss_pred HHHHHHHHHHHHhcCCCeeEEeeecCCCHH-HHHHHHHHHHHCCCCEEEEECCCCCCCCCCcCCCCCCccc--HHHHHHH
Confidence 5577777777765 776 567788777744 555565566677765 233223 12343 4433343
Q ss_pred cCc-----eeeCCCCC--CchhhhccccccchHHHHHHHhhhHhhH------------------HHHHHHHHHcC--CeE
Q 006566 182 FDK-----IRVNPGNF--ADRRAQFEQLEYTDDEYQKELQHIEEVF------------------SPLVEKCKKYG--RAV 234 (640)
Q Consensus 182 v~K-----VRINPGN~--~d~~k~F~~~eYtdeeY~~Ele~I~~~f------------------~~lV~~~Ke~g--~aI 234 (640)
+.+ ..|--.-| +.....+.........++.+++++++|+ ..+++.|++.| +||
T Consensus 121 Ir~~~gd~f~IgVAGYPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQlfFD~d~f~~f~~~~r~~Gi~vPI 200 (565)
T PLN02540 121 IRSKYGDYFGITVAGYPEAHPDVIGGDGLATPEAYQKDLAYLKEKVDAGADLIITQLFYDTDIFLKFVNDCRQIGITCPI 200 (565)
T ss_pred HHHhCCCCceEEEeCCCCCCCcccccccccCCCChHHHHHHHHHHHHcCCCEEeeccccCHHHHHHHHHHHHhcCCCCCE
Confidence 221 11211111 1111100111112234667888887776 78999999998 888
Q ss_pred EEee---------------CCCCCcHhHHHHh---CCChHH----HHHHHHHHHHHHHHCCCC
Q 006566 235 RIGT---------------NHGSLSDRIMSYY---GDSPRG----MVESAFEFARICRKLDFH 275 (640)
Q Consensus 235 RIGv---------------NhGSLs~ril~ry---Gdtp~g----MVeSAle~~~i~e~~~F~ 275 (640)
-.|+ -+-++++.|++++ .+.+++ =|+=|.|.++-+.+.|.+
T Consensus 201 ipGImPI~S~k~l~r~~~l~Gi~IP~~i~~rLe~~kddde~v~~~Gieia~e~~~~L~~~Gv~ 263 (565)
T PLN02540 201 VPGIMPINNYKGFLRMTGFCKTKIPAEITAALEPIKDNDEAVKAYGIHLGTEMCKKILAHGIK 263 (565)
T ss_pred EeeecccCCHHHHHHHHhccCCcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 8885 3455667666665 234433 344455555555555533
No 396
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=44.60 E-value=4.4e+02 Score=30.64 Aligned_cols=115 Identities=17% Similarity=0.205 Sum_probs=71.7
Q ss_pred CCCHHHHHHHH-HHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhh----cCcee-e
Q 006566 114 TKDVAGTVEEV-MRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC----FDKIR-V 187 (640)
Q Consensus 114 T~Dv~atv~Qi-~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~----v~KVR-I 187 (640)
+.|.+..|+.+ +++...|||+| |+-= -+-.-|++ ..++| |.||+.+.-=-+.|+.. -.||= |
T Consensus 36 ~~~~~~~~~~a~~~~~~~~~dvi-IsrG-----~ta~~i~~-----~~~iP-Vv~i~~s~~Dil~al~~a~~~~~~ia~v 103 (526)
T TIGR02329 36 QLGFEDAVREIRQRLGAERCDVV-VAGG-----SNGAYLKS-----RLSLP-VIVIKPTGFDVMQALARARRIASSIGVV 103 (526)
T ss_pred eccHHHHHHHHHHHHHhCCCcEE-EECc-----hHHHHHHH-----hCCCC-EEEecCChhhHHHHHHHHHhcCCcEEEE
Confidence 36778899988 44777799887 3322 23344555 47899 56899886555555443 34443 6
Q ss_pred CCCCCCchhhhcccc--------ccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCC
Q 006566 188 NPGNFADRRAQFEQL--------EYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGD 253 (640)
Q Consensus 188 NPGN~~d~~k~F~~~--------eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGd 253 (640)
.-+|+...-+.|..+ .|++ .+.....|+.+|+.|+-+=||- .+.-++-++||-
T Consensus 104 g~~~~~~~~~~~~~ll~~~i~~~~~~~----------~~e~~~~~~~l~~~G~~~viG~---~~~~~~A~~~gl 164 (526)
T TIGR02329 104 THQDTPPALRRFQAAFNLDIVQRSYVT----------EEDARSCVNDLRARGIGAVVGA---GLITDLAEQAGL 164 (526)
T ss_pred ecCcccHHHHHHHHHhCCceEEEEecC----------HHHHHHHHHHHHHCCCCEEECC---hHHHHHHHHcCC
Confidence 666666655443321 2221 2336677888888888886653 466778888883
No 397
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=44.39 E-value=1.5e+02 Score=29.65 Aligned_cols=79 Identities=20% Similarity=0.201 Sum_probs=55.9
Q ss_pred HHHHHHHHHHcCC-eEEEeeCCCCCcH-hHHHHhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEEeCChhhHHHHHHHHH
Q 006566 220 FSPLVEKCKKYGR-AVRIGTNHGSLSD-RIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLV 297 (640)
Q Consensus 220 f~~lV~~~Ke~g~-aIRIGvNhGSLs~-ril~ryGdtp~gMVeSAle~~~i~e~~~F~diviSmKsSn~~~mV~AyRlL~ 297 (640)
+...++.+++.|+ -|||-. |+|+ .+..+++-+++..++.+.+.++.+++.|+.- .|++-.+. ....+-+..++
T Consensus 69 i~~~~~~~~~~g~~~i~i~~---~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v-~~~~~~~~-~~~~~~~~~~~ 143 (237)
T PF00682_consen 69 IERAVEAAKEAGIDIIRIFI---SVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEV-AFGCEDAS-RTDPEELLELA 143 (237)
T ss_dssp HHHHHHHHHHTTSSEEEEEE---ETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEE-EEEETTTG-GSSHHHHHHHH
T ss_pred HHHHHHhhHhccCCEEEecC---cccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCce-EeCccccc-cccHHHHHHHH
Confidence 4444677778887 456554 5666 5666778889999999999999999999865 66665543 34556666677
Q ss_pred HHHHHc
Q 006566 298 AEMYVH 303 (640)
Q Consensus 298 ~~m~~~ 303 (640)
+++.+.
T Consensus 144 ~~~~~~ 149 (237)
T PF00682_consen 144 EALAEA 149 (237)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 764433
No 398
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=44.36 E-value=53 Score=32.47 Aligned_cols=50 Identities=18% Similarity=0.191 Sum_probs=34.7
Q ss_pred HHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCCCcceeeccCCCHH
Q 006566 121 VEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPS 173 (640)
Q Consensus 121 v~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~ 173 (640)
.+|+.+..++|+|+||+-..+.++ ++++.+.|+..+-.+-|.|=--+|++
T Consensus 90 ~ee~~ea~~~g~d~I~lD~~~~~~---~~~~v~~l~~~~~~v~ie~SGGI~~~ 139 (169)
T PF01729_consen 90 LEEAEEALEAGADIIMLDNMSPED---LKEAVEELRELNPRVKIEASGGITLE 139 (169)
T ss_dssp HHHHHHHHHTT-SEEEEES-CHHH---HHHHHHHHHHHTTTSEEEEESSSSTT
T ss_pred HHHHHHHHHhCCCEEEecCcCHHH---HHHHHHHHhhcCCcEEEEEECCCCHH
Confidence 689999999999999999999855 45555555555566666666555543
No 399
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=44.34 E-value=1.2e+02 Score=32.88 Aligned_cols=66 Identities=20% Similarity=0.244 Sum_probs=51.4
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCC--HHHHHHHHHHHHHhhcCCCCcceeeccCC--CHHHHHHHhhhcCc
Q 006566 116 DVAGTVEEVMRIADQGADLVRITVQG--KREADACFEIKNSLVQKNYNIPLVADIHF--APSVALRVAECFDK 184 (640)
Q Consensus 116 Dv~atv~Qi~rl~~aGceiVRvtvp~--~~~A~~l~~I~~~L~~~g~~iPLVADIHF--~~~~Al~Aa~~v~K 184 (640)
+.++.++++.++.+.|-.-+.+-+-. .++++.++.|++. -|-++.|..|-|- ++.-|+..++.++.
T Consensus 138 ~~e~~~~~a~~~~~~Gf~~~Kikvg~~~~~d~~~v~~vRe~---~G~~~~l~vDaN~~~~~~~A~~~~~~l~~ 207 (352)
T cd03328 138 DDDRLREQLSGWVAQGIPRVKMKIGRDPRRDPDRVAAARRA---IGPDAELFVDANGAYSRKQALALARAFAD 207 (352)
T ss_pred CHHHHHHHHHHHHHCCCCEEEeecCCCHHHHHHHHHHHHHH---cCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 56888999999999999999987632 5678888888875 3557999999985 55666666666654
No 400
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=44.23 E-value=3.1e+02 Score=28.09 Aligned_cols=150 Identities=8% Similarity=0.099 Sum_probs=87.9
Q ss_pred HHHHHHHHHHcCCCEEEEecCC-----HHHHHHHHHHHHHhhcCCCCcceeeccCCC-HHHHHHHhhh-cCceeeCCCCC
Q 006566 120 TVEEVMRIADQGADLVRITVQG-----KREADACFEIKNSLVQKNYNIPLVADIHFA-PSVALRVAEC-FDKIRVNPGNF 192 (640)
Q Consensus 120 tv~Qi~rl~~aGceiVRvtvp~-----~~~A~~l~~I~~~L~~~g~~iPLVADIHF~-~~~Al~Aa~~-v~KVRINPGN~ 192 (640)
-+++++.+.+.|++-+=+.=-+ ....+.+++|.+. +.+|+.++-.+. ..-+...... ++|+=++=..+
T Consensus 34 p~~~a~~~~~~g~~~l~ivDLd~~~g~~~n~~~i~~i~~~-----~~~pv~vgGGirs~edv~~~l~~Ga~kvviGs~~l 108 (241)
T PRK14024 34 PLDAALAWQRDGAEWIHLVDLDAAFGRGSNRELLAEVVGK-----LDVKVELSGGIRDDESLEAALATGCARVNIGTAAL 108 (241)
T ss_pred HHHHHHHHHHCCCCEEEEEeccccCCCCccHHHHHHHHHH-----cCCCEEEcCCCCCHHHHHHHHHCCCCEEEECchHh
Confidence 3567778888999866554111 1122455555553 679999999997 6666777777 99988877776
Q ss_pred CchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeC--CCCCcHhHHHHhCCChHHHHHHHHHHHHHHH
Q 006566 193 ADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTN--HGSLSDRIMSYYGDSPRGMVESAFEFARICR 270 (640)
Q Consensus 193 ~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvN--hGSLs~ril~ryGdtp~gMVeSAle~~~i~e 270 (640)
.+++. +.++++.+.++ +-+++. .|.+ +. .|-+. --.+.+++++.++
T Consensus 109 ~~p~l----------------------~~~i~~~~~~~---i~vsld~~~~~v----~~-~Gw~~--~~~~~~~~~~~l~ 156 (241)
T PRK14024 109 ENPEW----------------------CARVIAEHGDR---VAVGLDVRGHTL----AA-RGWTR--DGGDLWEVLERLD 156 (241)
T ss_pred CCHHH----------------------HHHHHHHhhhh---EEEEEEEeccEe----cc-CCeee--cCccHHHHHHHHH
Confidence 66442 44555554442 222221 1222 11 24211 1246789999999
Q ss_pred HCCCCcEEEEEEeCCh---hhHHHHHHHHHHHHHHcCCCcceEE
Q 006566 271 KLDFHNFLFSMKASNP---VVMVQAYRLLVAEMYVHGWDYPLHL 311 (640)
Q Consensus 271 ~~~F~diviSmKsSn~---~~mV~AyRlL~~~m~~~g~dyPLHL 311 (640)
+.|+..+++-==+.+- -.-.+.++.+.+. .+.|+-.
T Consensus 157 ~~G~~~iiv~~~~~~g~~~G~d~~~i~~i~~~-----~~ipvia 195 (241)
T PRK14024 157 SAGCSRYVVTDVTKDGTLTGPNLELLREVCAR-----TDAPVVA 195 (241)
T ss_pred hcCCCEEEEEeecCCCCccCCCHHHHHHHHhh-----CCCCEEE
Confidence 9999887775221110 0124555555555 6788654
No 401
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=44.18 E-value=48 Score=34.65 Aligned_cols=53 Identities=19% Similarity=0.320 Sum_probs=43.7
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCCCcceeeccC
Q 006566 115 KDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIH 169 (640)
Q Consensus 115 ~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~iPLVADIH 169 (640)
.+.+.-++.+++=.++||+ .+-+|=.=+++.+.+..+.+++.|+++|+++=|-
T Consensus 141 ~~~~~~~~~L~~K~~aGA~--f~iTQ~~fd~~~~~~~~~~~~~~gi~~PIi~Gi~ 193 (272)
T TIGR00676 141 PNLEEDIENLKRKVDAGAD--YAITQLFFDNDDYYRFVDRCRAAGIDVPIIPGIM 193 (272)
T ss_pred CCHHHHHHHHHHHHHcCCC--eEeeccccCHHHHHHHHHHHHHcCCCCCEecccC
Confidence 4456667777788899999 6788888889999999999999999999888764
No 402
>PRK14725 pyruvate kinase; Provisional
Probab=43.89 E-value=5.4e+02 Score=30.87 Aligned_cols=142 Identities=18% Similarity=0.250 Sum_probs=95.9
Q ss_pred HHcCCCEEEEe-cCCHHHHHHHHHHHHHhhcCCC-CcceeeccCCC------HHHHHHHhhh-cCceeeCCCCCCchhhh
Q 006566 128 ADQGADLVRIT-VQGKREADACFEIKNSLVQKNY-NIPLVADIHFA------PSVALRVAEC-FDKIRVNPGNFADRRAQ 198 (640)
Q Consensus 128 ~~aGceiVRvt-vp~~~~A~~l~~I~~~L~~~g~-~iPLVADIHF~------~~~Al~Aa~~-v~KVRINPGN~~d~~k~ 198 (640)
.+. +|+|=++ |++.+|.+. +++.|.+.|. +++|||=|-=. +.+..+|+.+ .|.|=|-=|..|-.-
T Consensus 442 ~~~-vD~ValSFVrs~~DV~~---lr~~L~~~g~~~~~IiaKIEt~~av~nL~eIl~~am~~~~DGIMIARGDLgvEi-- 515 (608)
T PRK14725 442 AKH-ADIVALSFVRSPEDVRL---LLDALEKLGADDLGVVLKIETRRAFENLPRILLEAMRHPRFGVMIARGDLAVEV-- 515 (608)
T ss_pred HHh-CCEEEECCCCCHHHHHH---HHHHHHHcCCCCCcEEEEECCHHHHHHHHHHHHhhccCCCcEEEEECCcccccc--
Confidence 344 6887776 555555554 4555555554 79999998421 5566667666 799999999998732
Q ss_pred ccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHH---hC-CChHHHHHHHHHHHHHHHHCCC
Q 006566 199 FEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSY---YG-DSPRGMVESAFEFARICRKLDF 274 (640)
Q Consensus 199 F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~r---yG-dtp~gMVeSAle~~~i~e~~~F 274 (640)
.++++-+-=+.++.+|.++|+|+=+.|. +|+. .+ +|=. |--+++-..|-
T Consensus 516 -------------~~e~lp~iQk~Ii~~c~~~~kPVI~ATQ-------mLESM~~~p~PTRA-------EvtDVAnAvga 568 (608)
T PRK14725 516 -------------GFERLAEVQEEILWLCEAAHVPVIWATQ-------VLESLAKKGLPSRA-------EITDAAMALRA 568 (608)
T ss_pred -------------CHHHHHHHHHHHHHHHHHcCCCEEEEcc-------hHhhhccCCCCCch-------hHHHHHhhhcC
Confidence 2334444456789999999999977773 2322 22 2222 22333333388
Q ss_pred CcEEEEEEeCChhhHHHHHHHHHHHHHHc
Q 006566 275 HNFLFSMKASNPVVMVQAYRLLVAEMYVH 303 (640)
Q Consensus 275 ~diviSmKsSn~~~mV~AyRlL~~~m~~~ 303 (640)
+-+.+| |-..|...|+..+.++.+|++.
T Consensus 569 D~VMLS-~G~yPveAV~~l~~I~~r~e~~ 596 (608)
T PRK14725 569 ECVMLN-KGPHIVEAVRVLDDILRRMEEH 596 (608)
T ss_pred CEEeec-CCCCHHHHHHHHHHHHHHHHHh
Confidence 999999 9999999999999999888643
No 403
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=43.88 E-value=55 Score=29.20 Aligned_cols=55 Identities=16% Similarity=0.170 Sum_probs=37.7
Q ss_pred HHHHHHHHHHcCCeEEEeeCCCCCcHh-H---HHHhC-C-ChHHHHHHHHHHHHHHHHCCC
Q 006566 220 FSPLVEKCKKYGRAVRIGTNHGSLSDR-I---MSYYG-D-SPRGMVESAFEFARICRKLDF 274 (640)
Q Consensus 220 f~~lV~~~Ke~g~aIRIGvNhGSLs~r-i---l~ryG-d-tp~gMVeSAle~~~i~e~~~F 274 (640)
-.++++..+++|+++++=+|.+|.+.. + +.+.| + +++.++-|+.--.+.+.+..+
T Consensus 19 a~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~~~~~i~ts~~~~~~~l~~~~~ 79 (101)
T PF13344_consen 19 AVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPVDEDEIITSGMAAAEYLKEHKG 79 (101)
T ss_dssp HHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT--GGGEEEHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCCCcCEEEChHHHHHHHHHhcCC
Confidence 467899999999999999999999832 2 24455 3 566666677666666666433
No 404
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=43.86 E-value=57 Score=34.82 Aligned_cols=71 Identities=13% Similarity=0.186 Sum_probs=46.2
Q ss_pred HHHHHHHcCCCEEEEecCCHHH------------HHHHHHHHHHhhcCCCCcceee------ccCCCHHHHHHHhhh-cC
Q 006566 123 EVMRIADQGADLVRITVQGKRE------------ADACFEIKNSLVQKNYNIPLVA------DIHFAPSVALRVAEC-FD 183 (640)
Q Consensus 123 Qi~rl~~aGceiVRvtvp~~~~------------A~~l~~I~~~L~~~g~~iPLVA------DIHF~~~~Al~Aa~~-v~ 183 (640)
.+.++.++|-..|.|+..+.++ .++++.|++ |+++|+++-+.. +.|.-+.++..+.+. ++
T Consensus 115 ~~~~l~~~~~~~i~VSLDG~~e~hd~~~~~~g~f~~~l~~I~~-l~~~G~~v~v~~tv~~~~n~~ei~~~~~~~~~lGv~ 193 (318)
T TIGR03470 115 KLDKFEPSPYLTFSVHLDGLREHHDASVCREGVFDRAVEAIRE-AKARGFRVTTNTTLFNDTDPEEVAEFFDYLTDLGVD 193 (318)
T ss_pred HHHHHHhCCCcEEEEEEecCchhhchhhcCCCcHHHHHHHHHH-HHHCCCcEEEEEEEeCCCCHHHHHHHHHHHHHcCCC
Confidence 3566788898888988776532 245666664 566677654422 233335666667777 89
Q ss_pred ceeeCCCCCCc
Q 006566 184 KIRVNPGNFAD 194 (640)
Q Consensus 184 KVRINPGN~~d 194 (640)
.|.|.||.--+
T Consensus 194 ~i~i~p~~~~~ 204 (318)
T TIGR03470 194 GMTISPGYAYE 204 (318)
T ss_pred EEEEecCcccc
Confidence 99999986433
No 405
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=43.66 E-value=51 Score=34.15 Aligned_cols=75 Identities=13% Similarity=0.125 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHcCCCEE-----EEecCCHHHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhh-cCceeeCCCCC
Q 006566 119 GTVEEVMRIADQGADLV-----RITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGNF 192 (640)
Q Consensus 119 atv~Qi~rl~~aGceiV-----Rvtvp~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~-v~KVRINPGN~ 192 (640)
-|++|....+++||++| |+.-.+.+-.+-+.+|.+.++..++++=++|=--=++.-.++|++. ++-|=|.|--+
T Consensus 114 fs~~Qa~~Aa~aGa~yvsPyvgRi~d~g~D~~~~i~~i~~~~~~~~~~tkILaAS~r~~~~v~~a~~~G~d~vTvp~~vl 193 (222)
T PRK12656 114 YTVFQGLLAIEAGADYLAPYYNRMENLNIDSNAVIGQLAEAIDRENSDSKILAASFKNVAQVNKAFALGAQAVTAGPDVF 193 (222)
T ss_pred CCHHHHHHHHHCCCCEEecccchhhhcCCCHHHHHHHHHHHHHhcCCCCEEEEEecCCHHHHHHHHHcCCCEEecCHHHH
Confidence 46889999999999999 6666666777888899999999999999999888899999999988 99999988766
Q ss_pred C
Q 006566 193 A 193 (640)
Q Consensus 193 ~ 193 (640)
.
T Consensus 194 ~ 194 (222)
T PRK12656 194 E 194 (222)
T ss_pred H
Confidence 3
No 406
>cd01016 TroA Metal binding protein TroA. These proteins have been shown to function as initial receptors in ABC transport of Zn2+ and possibly Fe3+ in many eubacterial species. The TroA proteins belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=43.03 E-value=1.7e+02 Score=30.49 Aligned_cols=168 Identities=15% Similarity=0.205 Sum_probs=100.5
Q ss_pred cCCCCceEEEeccC--CCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhc--------CCCC-cceee
Q 006566 98 IGSEHPIRVQTMTT--NDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQ--------KNYN-IPLVA 166 (640)
Q Consensus 98 IGG~~PI~VQSMt~--t~T~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~--------~g~~-iPLVA 166 (640)
|||+ -+.|+||.. .+.++.+-+..|++++.+| |++=..=.+.+ .-+..+.+.+.. .++. .+.+.
T Consensus 18 I~gd-~v~V~~li~~g~dpH~yep~p~d~~~l~~A--dliv~~G~~~E--~w~~k~~~~~~~~~~~v~~~~~~~~~~~~~ 92 (276)
T cd01016 18 IGGD-HVEVTGLMGPGVDPHLYKATAGDVEKLQNA--DVVFYNGLHLE--GKMSDVLSKLGSSKSVIALEDTLDRSQLIL 92 (276)
T ss_pred HcCC-eEEEEEeeCCCCCcccCCCCHHHHHHHHhC--CEEEEcCcChH--HHHHHHHHHhccCCceEEeccCcCcccccc
Confidence 5665 589999864 5679999999999999976 56544444554 355555554421 1111 11111
Q ss_pred -------ccC--CCHHHHHHHhhh-cCc-eeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEE
Q 006566 167 -------DIH--FAPSVALRVAEC-FDK-IRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVR 235 (640)
Q Consensus 167 -------DIH--F~~~~Al~Aa~~-v~K-VRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIR 235 (640)
|=| ++|..|...++. .++ .+..|-|=..=++ .-+.|.++|+.+.++++..+...++.++.+
T Consensus 93 ~~~~~~~dPH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~-------N~~~~~~~L~~l~~~~~~~l~~~~~~~~~~- 164 (276)
T cd01016 93 DEEEGTYDPHIWFDVKLWKYAVKAVAEVLSEKLPEHKDEFQA-------NSEAYVEELDSLDAYAKKKIAEIPEQQRVL- 164 (276)
T ss_pred cccCCCCCCCcccCHHHHHHHHHHHHHHHHHHCcccHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhCchhcCeE-
Confidence 333 346677777776 333 2478877211111 135699999999998888877654433333
Q ss_pred EeeCCCCCcHhHHHHhCCC---hHHH-------HHHHHHHHHHHHHCCCCcEEEE
Q 006566 236 IGTNHGSLSDRIMSYYGDS---PRGM-------VESAFEFARICRKLDFHNFLFS 280 (640)
Q Consensus 236 IGvNhGSLs~ril~ryGdt---p~gM-------VeSAle~~~i~e~~~F~diviS 280 (640)
=|.|.++ .-+.++||-+ +.++ ...-.+.++.+++.+-.-|...
T Consensus 165 -~t~H~af-~Y~~~~ygl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e 217 (276)
T cd01016 165 -VTAHDAF-GYFGRAYGFEVKGLQGISTDSEAGLRDINELVDLIVERKIKAIFVE 217 (276)
T ss_pred -EEecCcH-HHHHHHcCCeEecCcCCCcccCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 6788877 4577888832 2221 1223456667777777644443
No 407
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=42.99 E-value=2.8e+02 Score=31.08 Aligned_cols=28 Identities=14% Similarity=0.146 Sum_probs=23.6
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCC
Q 006566 114 TKDVAGTVEEVMRIADQGADLVRITVQG 141 (640)
Q Consensus 114 T~Dv~atv~Qi~rl~~aGceiVRvtvp~ 141 (640)
.+.++..+++++.+.+.|..-|.++-++
T Consensus 166 sr~~e~Iv~Ei~~l~~~G~keI~l~g~~ 193 (440)
T PRK14334 166 SRHPDLILRELELLKAAGVQEVTLLGQN 193 (440)
T ss_pred cCCHHHHHHHHHHHHHCCCeEEEEEecc
Confidence 3678999999999999999888887544
No 408
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=42.78 E-value=1.5e+02 Score=26.36 Aligned_cols=68 Identities=16% Similarity=0.276 Sum_probs=43.3
Q ss_pred HHHHHHHcC-CeEEEeeCCCCCcHh-HHHHhCCChHHHHHHHHHHHHHHHHCCCCc---EEEEEEeCChhhHHHHHH
Q 006566 223 LVEKCKKYG-RAVRIGTNHGSLSDR-IMSYYGDSPRGMVESAFEFARICRKLDFHN---FLFSMKASNPVVMVQAYR 294 (640)
Q Consensus 223 lV~~~Ke~g-~aIRIGvNhGSLs~r-il~ryGdtp~gMVeSAle~~~i~e~~~F~d---iviSmKsSn~~~mV~AyR 294 (640)
.++..+++| ..|++|+++++ ++ +...++ +..-.+..++.++.|.+.|+.. +.+=.+-.|-..+.+.++
T Consensus 92 ~l~~l~~~~~~~i~~~l~s~~--~~~~~~~~~--~~~~~~~~~~~l~~l~~~g~~~~~~~i~~~~~~~~~e~~~~~~ 164 (166)
T PF04055_consen 92 LLDELKKLGVDRIRISLESLD--EESVLRIIN--RGKSFERVLEALERLKEAGIPRVIIFIVGLPGENDEEIEETIR 164 (166)
T ss_dssp HHHHHHHTTCSEEEEEEBSSS--HHHHHHHHS--STSHHHHHHHHHHHHHHTTSETEEEEEEEBTTTSHHHHHHHHH
T ss_pred HHHHHHhcCccEEecccccCC--HHHhhhhhc--CCCCHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHhC
Confidence 566677777 88888988754 55 666664 2344577888999999999974 233333344344444443
No 409
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=42.77 E-value=43 Score=35.09 Aligned_cols=51 Identities=16% Similarity=0.129 Sum_probs=41.9
Q ss_pred CCCCHHHHHhhhcCCceEEEeecCCCCCCCchhHHHHHHHHHHHHCCCCCCEEEE
Q 006566 524 GDESYEELEILKDIDATMILHDLPFNEDKIGRVQAARRLFEYLSENNLNFPVIHH 578 (640)
Q Consensus 524 ~~~~~e~l~~lk~~~~~v~il~~~~~~~~~~~v~~~R~l~~~L~~~g~~~PVi~~ 578 (640)
....+++++..+.++|.++... .--..-|..+|.+.++|.+.|++.||+.-
T Consensus 141 dvP~e~fve~a~e~k~d~v~~S----alMTttm~~~~~viE~L~eeGiRd~v~v~ 191 (227)
T COG5012 141 DVPVEEFVEKAKELKPDLVSMS----ALMTTTMIGMKDVIELLKEEGIRDKVIVM 191 (227)
T ss_pred CCCHHHHHHHHHHcCCcEEech----HHHHHHHHHHHHHHHHHHHcCCccCeEEe
Confidence 3445788899999999888855 34446678899999999999999999997
No 410
>PRK00208 thiG thiazole synthase; Reviewed
Probab=42.67 E-value=4.5e+02 Score=28.12 Aligned_cols=146 Identities=17% Similarity=0.282 Sum_probs=88.5
Q ss_pred eccCCCC-CCHHHHHHHHHHHHHc-CCCEEEEecCCH------HHHHHHHHHHHHhhcCCCC-cceeeccCCCHHHHHHH
Q 006566 108 TMTTNDT-KDVAGTVEEVMRIADQ-GADLVRITVQGK------READACFEIKNSLVQKNYN-IPLVADIHFAPSVALRV 178 (640)
Q Consensus 108 SMt~t~T-~Dv~atv~Qi~rl~~a-GceiVRvtvp~~------~~A~~l~~I~~~L~~~g~~-iPLVADIHF~~~~Al~A 178 (640)
=|-||.- +..+..|.-.+--.++ |.+.|-+-|-+- +-.+.++.- +.|.++|.. +|.++| ||..|...
T Consensus 65 ~lpNTaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~llpd~~~tv~aa-~~L~~~Gf~vlpyc~~---d~~~ak~l 140 (250)
T PRK00208 65 LLPNTAGCRTAEEAVRTARLAREALGTNWIKLEVIGDDKTLLPDPIETLKAA-EILVKEGFVVLPYCTD---DPVLAKRL 140 (250)
T ss_pred ECCCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCHHHHHHHH-HHHHHCCCEEEEEeCC---CHHHHHHH
Confidence 3455553 4444444433322333 669999987542 122333333 345666888 789998 68888887
Q ss_pred hhh-cCceeeCC--CCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHH-cCCeEEEeeCCCCCcHhHHHHhCCC
Q 006566 179 AEC-FDKIRVNP--GNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKK-YGRAVRIGTNHGSLSDRIMSYYGDS 254 (640)
Q Consensus 179 a~~-v~KVRINP--GN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke-~g~aIRIGvNhGSLs~ril~ryGdt 254 (640)
++. ++-| -| -=||.+.. ..+.+| ++..++ .++|+=++-.- .|
T Consensus 141 ~~~G~~~v--mPlg~pIGsg~g------i~~~~~--------------i~~i~e~~~vpVIveaGI------------~t 186 (250)
T PRK00208 141 EEAGCAAV--MPLGAPIGSGLG------LLNPYN--------------LRIIIEQADVPVIVDAGI------------GT 186 (250)
T ss_pred HHcCCCEe--CCCCcCCCCCCC------CCCHHH--------------HHHHHHhcCCeEEEeCCC------------CC
Confidence 777 8877 77 66766432 122222 333333 36777655422 35
Q ss_pred hHHHHHHHHHHHHHHHHCCCCcEEEE---EEeCChhhHHHHHHHHHHH
Q 006566 255 PRGMVESAFEFARICRKLDFHNFLFS---MKASNPVVMVQAYRLLVAE 299 (640)
Q Consensus 255 p~gMVeSAle~~~i~e~~~F~diviS---mKsSn~~~mV~AyRlL~~~ 299 (640)
| |.+..+-++|++-+++- .||.||..|.++++.-++.
T Consensus 187 p--------eda~~AmelGAdgVlV~SAItka~dP~~ma~af~~Av~a 226 (250)
T PRK00208 187 P--------SDAAQAMELGADAVLLNTAIAVAGDPVAMARAFKLAVEA 226 (250)
T ss_pred H--------HHHHHHHHcCCCEEEEChHhhCCCCHHHHHHHHHHHHHH
Confidence 5 23444555999988764 6999999999999987754
No 411
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=42.49 E-value=78 Score=35.93 Aligned_cols=77 Identities=22% Similarity=0.305 Sum_probs=53.4
Q ss_pred eccCCCCCCHHHHHHHHHHHHHcCCCEEEEe----cCCH-HHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHH----HH
Q 006566 108 TMTTNDTKDVAGTVEEVMRIADQGADLVRIT----VQGK-READACFEIKNSLVQKNYNIPLVADIHFAPSVAL----RV 178 (640)
Q Consensus 108 SMt~t~T~Dv~atv~Qi~rl~~aGceiVRvt----vp~~-~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al----~A 178 (640)
|.|..+-.+.+.-++-++++.++||+.|++. .-.+ +-++-++.||+. +++||-.-.|-+.-+|. +|
T Consensus 144 ~~t~~p~~~~~~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~lv~alk~~-----~~~pi~~H~Hnt~GlA~AN~laA 218 (448)
T PRK12331 144 SYTTSPVHTIDYFVKLAKEMQEMGADSICIKDMAGILTPYVAYELVKRIKEA-----VTVPLEVHTHATSGIAEMTYLKA 218 (448)
T ss_pred EeecCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHh-----cCCeEEEEecCCCCcHHHHHHHH
Confidence 4444455789999999999999999998887 1122 344555566654 56898777777766655 67
Q ss_pred hhh-cCcee--eCC
Q 006566 179 AEC-FDKIR--VNP 189 (640)
Q Consensus 179 a~~-v~KVR--INP 189 (640)
+++ ++-|= |||
T Consensus 219 ieaGad~vD~sv~g 232 (448)
T PRK12331 219 IEAGADIIDTAISP 232 (448)
T ss_pred HHcCCCEEEeeccc
Confidence 777 76554 554
No 412
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=42.45 E-value=1.6e+02 Score=32.58 Aligned_cols=67 Identities=19% Similarity=0.427 Sum_probs=47.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecC--C-----------------------------------HHHHHHHHHHHHHhhc
Q 006566 115 KDVAGTVEEVMRIADQGADLVRITVQ--G-----------------------------------KREADACFEIKNSLVQ 157 (640)
Q Consensus 115 ~Dv~atv~Qi~rl~~aGceiVRvtvp--~-----------------------------------~~~A~~l~~I~~~L~~ 157 (640)
.+.+..++++.++.+.|..-+.+-+- + ..+.+-++.|++.
T Consensus 126 ~~~~~~~~~a~~~~~~Gf~~~KiKvg~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~v~avre~--- 202 (404)
T PRK15072 126 RDIDELLDDVARHLELGYKAIRVQCGVPGLKTTYGVSKGKGLAYEPATKGLLPEEELWSTEKYLRFVPKLFEAVRNK--- 202 (404)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHhh---
Confidence 46788899999999999999999752 1 0123566666663
Q ss_pred CCCCcceeeccCC--CHHHHHHHhhhcCc
Q 006566 158 KNYNIPLVADIHF--APSVALRVAECFDK 184 (640)
Q Consensus 158 ~g~~iPLVADIHF--~~~~Al~Aa~~v~K 184 (640)
-|-++.|..|.|. ++.-|...++.++.
T Consensus 203 ~G~~~~l~vDaN~~w~~~~A~~~~~~l~~ 231 (404)
T PRK15072 203 FGFDLHLLHDVHHRLTPIEAARLGKSLEP 231 (404)
T ss_pred hCCCceEEEECCCCCCHHHHHHHHHhccc
Confidence 3567999999875 55666666665654
No 413
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=42.39 E-value=1.4e+02 Score=33.75 Aligned_cols=91 Identities=15% Similarity=0.161 Sum_probs=62.8
Q ss_pred HHHHHHHHHHc-CCe-EEEeeCC-----CCCcHhH---HHHhC--------CChHHHHHHHHHHHHHHHHCCC--CcEEE
Q 006566 220 FSPLVEKCKKY-GRA-VRIGTNH-----GSLSDRI---MSYYG--------DSPRGMVESAFEFARICRKLDF--HNFLF 279 (640)
Q Consensus 220 f~~lV~~~Ke~-g~a-IRIGvNh-----GSLs~ri---l~ryG--------dtp~gMVeSAle~~~i~e~~~F--~divi 279 (640)
+..+++..++. |+. ||||+|. --+.+.+ |.+|+ +.|..+-+.+.+-++.+.+.|. .+--+
T Consensus 174 L~~iL~~L~~IphV~~IRI~TR~pvv~P~RIT~ell~~Lk~~~~~~v~~h~nhp~Eit~~a~~Al~~L~~aGI~l~nQsV 253 (417)
T TIGR03820 174 LDWILTELRAIPHVEVIRIGTRVPVVLPQRITDELVAILKKHHPVWLNTHFNHPREITASSKKALAKLADAGIPLGNQSV 253 (417)
T ss_pred HHHHHHHHhhcCCCceEEEeeccccccccccCHHHHHHHHhcCCeEEEEeCCChHhChHHHHHHHHHHHHcCCEEEeece
Confidence 34444554444 565 9999993 2344544 44555 2367789999999999999997 34445
Q ss_pred EEEeCChhhHHHHHHHHHHHHHHcCCC-cceEEE
Q 006566 280 SMKASNPVVMVQAYRLLVAEMYVHGWD-YPLHLG 312 (640)
Q Consensus 280 SmKsSn~~~mV~AyRlL~~~m~~~g~d-yPLHLG 312 (640)
-+|--| .-.+..+.|+++|.+.|+. |=||..
T Consensus 254 LLkGVN--D~~~~l~~L~~~L~~~gV~PYYl~~~ 285 (417)
T TIGR03820 254 LLAGVN--DCPRIMKKLVHKLVANRVRPYYLYQC 285 (417)
T ss_pred EECCcC--CCHHHHHHHHHHHHHCCCeeceeeec
Confidence 567654 5677788888888888986 888764
No 414
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=42.24 E-value=4.4e+02 Score=29.87 Aligned_cols=30 Identities=20% Similarity=0.234 Sum_probs=25.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecCCH
Q 006566 113 DTKDVAGTVEEVMRIADQGADLVRITVQGK 142 (640)
Q Consensus 113 ~T~Dv~atv~Qi~rl~~aGceiVRvtvp~~ 142 (640)
..+..+..+++|+.|.+.|..-|.++-++.
T Consensus 195 rsrs~e~Vv~Ei~~l~~~g~~eI~l~~~~~ 224 (467)
T PRK14329 195 RSRDPESILNEVRDLFAKGYKEVTLLGQNV 224 (467)
T ss_pred ccCCHHHHHHHHHHHHHCCCeEEEEEeecc
Confidence 357889999999999999998888886653
No 415
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=42.21 E-value=53 Score=36.82 Aligned_cols=53 Identities=15% Similarity=0.260 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHcCCeEEEe-eCCCCC-cHhHHHHhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEEeCChhhH
Q 006566 219 VFSPLVEKCKKYGRAVRIG-TNHGSL-SDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVM 289 (640)
Q Consensus 219 ~f~~lV~~~Ke~g~aIRIG-vNhGSL-s~ril~ryGdtp~gMVeSAle~~~i~e~~~F~diviSmKsSn~~~m 289 (640)
.+.++++.||++|+++-|+ ||.--| +.+ .++-+.+.+.+-+.||+|+.|+..-
T Consensus 90 ~l~eLl~~lk~~gi~taI~~TnG~~l~~~e------------------~~~~L~~~gld~v~iSvka~dpe~h 144 (404)
T TIGR03278 90 ELEELTKGLSDLGLPIHLGYTSGKGFDDPE------------------IAEFLIDNGVREVSFTVFATDPELR 144 (404)
T ss_pred HHHHHHHHHHhCCCCEEEeCCCCcccCCHH------------------HHHHHHHcCCCEEEEecccCCHHHH
Confidence 4788999999999999998 654224 332 3344556777889999999997743
No 416
>PRK13189 peroxiredoxin; Provisional
Probab=42.21 E-value=52 Score=33.49 Aligned_cols=67 Identities=13% Similarity=0.107 Sum_probs=43.9
Q ss_pred CceEEEec----cCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHH-HHHHHHHhhcCCCCcceeeccC
Q 006566 102 HPIRVQTM----TTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADA-CFEIKNSLVQKNYNIPLVADIH 169 (640)
Q Consensus 102 ~PI~VQSM----t~t~T~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~A~~-l~~I~~~L~~~g~~iPLVADIH 169 (640)
.++.+=+. |-..+..+.+-.+...++.+.||++|=|++.+..+..+ ++.+++.+ ..+++.|+++|-.
T Consensus 36 k~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~-g~~i~fPllsD~~ 107 (222)
T PRK13189 36 KWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKL-GVEIEFPIIADDR 107 (222)
T ss_pred CeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhc-CcCcceeEEEcCc
Confidence 34555443 22334445555566677788999999999999887655 44566532 1247889999964
No 417
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=42.18 E-value=33 Score=37.39 Aligned_cols=50 Identities=22% Similarity=0.375 Sum_probs=36.6
Q ss_pred CCCHHHHHH----HHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCCC-cceee
Q 006566 114 TKDVAGTVE----EVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYN-IPLVA 166 (640)
Q Consensus 114 T~Dv~atv~----Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~-iPLVA 166 (640)
.-|-++|++ |....++||||+| +||-===--.+.||+.|.+.|+. +|+++
T Consensus 129 ~idND~Tl~~L~k~Als~A~AGADiV---APSdMMDGrV~aIR~aLd~~g~~~v~Ims 183 (314)
T cd00384 129 YVDNDATLELLAKIAVSHAEAGADIV---APSDMMDGRVAAIREALDEAGFSDVPIMS 183 (314)
T ss_pred cCccHHHHHHHHHHHHHHHHcCCCee---ecccccccHHHHHHHHHHHCCCCCCceee
Confidence 345566665 4555689999998 45433334578899999999995 99987
No 418
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=42.15 E-value=6.5e+02 Score=29.77 Aligned_cols=155 Identities=16% Similarity=0.169 Sum_probs=94.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEe----------cCCHHHHHHHHHHHHHhhcCCCCcceeecc---------CCCHH--
Q 006566 115 KDVAGTVEEVMRIADQGADLVRIT----------VQGKREADACFEIKNSLVQKNYNIPLVADI---------HFAPS-- 173 (640)
Q Consensus 115 ~Dv~atv~Qi~rl~~aGceiVRvt----------vp~~~~A~~l~~I~~~L~~~g~~iPLVADI---------HF~~~-- 173 (640)
..++.-++=+..|.++|.+.+=+. .-+.++.+.|+.|++. .-++++.+=. |+.-+
T Consensus 18 ~~t~dkl~ia~~L~~~Gv~~IE~~GGatfd~~~~f~~e~~~e~l~~l~~~----~~~~~l~~L~Rg~N~~G~~~ypddvv 93 (582)
T TIGR01108 18 MRTEDMLPIAEKLDDVGYWSLEVWGGATFDACIRFLNEDPWERLRELKKA----LPNTPLQMLLRGQNLLGYRHYADDVV 93 (582)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCCcccccccccCCCCHHHHHHHHHHh----CCCCEEEEEEccccccccccCchhhH
Confidence 455666777788999999988774 2355678888888874 2335555421 22111
Q ss_pred --HHHHHhhh-cCceeeC-CCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHH
Q 006566 174 --VALRVAEC-FDKIRVN-PGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMS 249 (640)
Q Consensus 174 --~Al~Aa~~-v~KVRIN-PGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ 249 (640)
....|+++ ++-|||- |-|-. +.+...++.||++|.-++..+..- .+.
T Consensus 94 ~~~v~~a~~~Gvd~irif~~lnd~------------------------~n~~~~i~~ak~~G~~v~~~i~~t-~~p---- 144 (582)
T TIGR01108 94 ERFVKKAVENGMDVFRIFDALNDP------------------------RNLQAAIQAAKKHGAHAQGTISYT-TSP---- 144 (582)
T ss_pred HHHHHHHHHCCCCEEEEEEecCcH------------------------HHHHHHHHHHHHcCCEEEEEEEec-cCC----
Confidence 23456677 8888874 22211 247788899999999888665221 122
Q ss_pred HhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEEeCChhhHHHHHHHHHHHHHHcCCCcceEE
Q 006566 250 YYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHL 311 (640)
Q Consensus 250 ryGdtp~gMVeSAle~~~i~e~~~F~diviSmKsSn~~~mV~AyRlL~~~m~~~g~dyPLHL 311 (640)
| .+++-+ ++.++-+++.|-+ .|++|-++=..+=...+.|+..+.++ ++.|+|+
T Consensus 145 -~-~~~~~~----~~~~~~~~~~Gad--~I~i~Dt~G~~~P~~v~~lv~~lk~~-~~~pi~~ 197 (582)
T TIGR01108 145 -V-HTLETY----LDLAEELLEMGVD--SICIKDMAGILTPKAAYELVSALKKR-FGLPVHL 197 (582)
T ss_pred -C-CCHHHH----HHHHHHHHHcCCC--EEEECCCCCCcCHHHHHHHHHHHHHh-CCCceEE
Confidence 1 244444 4455566777876 57888876555555555555554332 4567765
No 419
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=42.02 E-value=4.6e+02 Score=29.38 Aligned_cols=143 Identities=15% Similarity=0.109 Sum_probs=78.9
Q ss_pred CCCHHHHHHHHHHHHHc--CCCEEEEecCCH-HHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhh-cCceeeCC
Q 006566 114 TKDVAGTVEEVMRIADQ--GADLVRITVQGK-READACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNP 189 (640)
Q Consensus 114 T~Dv~atv~Qi~rl~~a--GceiVRvtvp~~-~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~-v~KVRINP 189 (640)
.+.++..+++|+.+.+. |..-+-+.-.+. ..-+.+.+|.+.|.+.|+....-+...+++.+.....++ +..|=|..
T Consensus 226 ~rs~e~V~~Ei~~~~~~~~~~~~i~f~Dd~f~~~~~~~~~l~~~l~~~~i~~~~~~~~~~~~e~l~~l~~aG~~~v~iGi 305 (472)
T TIGR03471 226 TRSAESVIEEVKYALENFPEVREFFFDDDTFTDDKPRAEEIARKLGPLGVTWSCNARANVDYETLKVMKENGLRLLLVGY 305 (472)
T ss_pred eCCHHHHHHHHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHhhcCceEEEEecCCCCHHHHHHHHHcCCCEEEEcC
Confidence 46788889999988876 555555542111 112234444455555565544444455788776655555 55444443
Q ss_pred CCCCchhhhccccccchHHHHHHHhh--hHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCCChHHHHHHHHHHHH
Q 006566 190 GNFADRRAQFEQLEYTDDEYQKELQH--IEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFAR 267 (640)
Q Consensus 190 GN~~d~~k~F~~~eYtdeeY~~Ele~--I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGdtp~gMVeSAle~~~ 267 (640)
-...+. -.+.+.| -.+.+...++.|+++|+.+....=-|- -|+|++ +..+-++
T Consensus 306 ES~s~~-------------~L~~~~K~~~~~~~~~~i~~~~~~Gi~v~~~~IiGl--------Pget~e----~~~~ti~ 360 (472)
T TIGR03471 306 ESGDQQ-------------ILKNIKKGLTVEIARRFTRDCHKLGIKVHGTFILGL--------PGETRE----TIRKTID 360 (472)
T ss_pred CCCCHH-------------HHHHhcCCCCHHHHHHHHHHHHHCCCeEEEEEEEeC--------CCCCHH----HHHHHHH
Confidence 333221 1111111 123577888899999877655442222 245653 4455667
Q ss_pred HHHHCCCCcEEEEE
Q 006566 268 ICRKLDFHNFLFSM 281 (640)
Q Consensus 268 i~e~~~F~diviSm 281 (640)
.+.+++.+.+.+++
T Consensus 361 ~~~~l~~~~~~~~~ 374 (472)
T TIGR03471 361 FAKELNPHTIQVSL 374 (472)
T ss_pred HHHhcCCCceeeee
Confidence 77788877666654
No 420
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=42.00 E-value=1.3e+02 Score=30.08 Aligned_cols=74 Identities=30% Similarity=0.311 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHH-cC--CCEEEEecCCHHHHHHHHHHHHHhhcCCCCcceeeccCCC-HHHHHHHhhhcCceeeCCCC
Q 006566 117 VAGTVEEVMRIAD-QG--ADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFA-PSVALRVAECFDKIRVNPGN 191 (640)
Q Consensus 117 v~atv~Qi~rl~~-aG--ceiVRvtvp~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~-~~~Al~Aa~~v~KVRINPGN 191 (640)
.+...+.+.++.+ .- +=++|+..|+-. ...+.+|.+.|++.....|+||=+|-. ...+...+-++|+|-.+|+.
T Consensus 15 ~~~l~~~l~~a~~d~~i~~vvl~~~s~Gg~-~~~~~~l~~~i~~~~~~kpvia~v~g~a~s~g~~la~aaD~i~a~p~a 92 (207)
T TIGR00706 15 PEDFDKKIKRIKDDKSIKALLLRINSPGGT-VVASEEIYEKLKKLKAKKPVVASMGGVAASGGYYIAMAADEIVANPGT 92 (207)
T ss_pred HHHHHHHHHHHhhCCCccEEEEEecCCCCC-HHHHHHHHHHHHHhcCCCCEEEEECCccchHHHHHHhcCCEEEECCCC
Confidence 3445555555553 23 337788777653 345566676666554569999988654 34666666679999999974
No 421
>PLN02540 methylenetetrahydrofolate reductase
Probab=41.94 E-value=40 Score=39.44 Aligned_cols=107 Identities=21% Similarity=0.182 Sum_probs=74.6
Q ss_pred cccccccccCCCc---eeEEEceeecCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHH
Q 006566 76 YCESIHKTVRRKT---RTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIK 152 (640)
Q Consensus 76 Yc~s~~~~~Rr~T---r~V~VG~v~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~ 152 (640)
|..++-.+.|++. -.|-|...+.| ||-..-.-......|.+.-++-.++=.+|||| .+-+|=.=+++++.+..
T Consensus 113 ~A~dLV~~Ir~~~gd~f~IgVAGYPEg--Hpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAd--FiITQlfFD~d~f~~f~ 188 (565)
T PLN02540 113 CALDLVKHIRSKYGDYFGITVAGYPEA--HPDVIGGDGLATPEAYQKDLAYLKEKVDAGAD--LIITQLFYDTDIFLKFV 188 (565)
T ss_pred cHHHHHHHHHHhCCCCceEEEeCCCCC--CCcccccccccCCCChHHHHHHHHHHHHcCCC--EEeeccccCHHHHHHHH
Confidence 5566666666653 34666666664 44321111122336888889999999999999 57889889999999999
Q ss_pred HHhhcCCCCcceeeccCC--CHHHHHHHhhhcCceee
Q 006566 153 NSLVQKNYNIPLVADIHF--APSVALRVAECFDKIRV 187 (640)
Q Consensus 153 ~~L~~~g~~iPLVADIHF--~~~~Al~Aa~~v~KVRI 187 (640)
+++|+.|+++|+++=|-= +++-+...++ +-+|+|
T Consensus 189 ~~~r~~Gi~vPIipGImPI~S~k~l~r~~~-l~Gi~I 224 (565)
T PLN02540 189 NDCRQIGITCPIVPGIMPINNYKGFLRMTG-FCKTKI 224 (565)
T ss_pred HHHHhcCCCCCEEeeecccCCHHHHHHHHh-ccCCcC
Confidence 999999999999998864 3555554444 336665
No 422
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=41.71 E-value=1.7e+02 Score=31.83 Aligned_cols=99 Identities=21% Similarity=0.264 Sum_probs=61.8
Q ss_pred HHHHhhhHhhHHHHHHHHHHcCCe-EEEeeCCCCCcHhHH--------HHhCCChHHHHHHHHHHHHHHHH-CCCCcEEE
Q 006566 210 QKELQHIEEVFSPLVEKCKKYGRA-VRIGTNHGSLSDRIM--------SYYGDSPRGMVESAFEFARICRK-LDFHNFLF 279 (640)
Q Consensus 210 ~~Ele~I~~~f~~lV~~~Ke~g~a-IRIGvNhGSLs~ril--------~ryGdtp~gMVeSAle~~~i~e~-~~F~divi 279 (640)
.+|+++|.+.|..=.+.|++.|-- |=|=.-||.|=..++ .+||.+.+.=..=++|-++-.++ .|-+ + |
T Consensus 144 ~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d-~-v 221 (338)
T cd02933 144 TEEIPGIVADFRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGAD-R-V 221 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCC-c-e
Confidence 457778888899999999998765 334445675544444 45886655444455555554444 4533 3 7
Q ss_pred EEEeCChh--------hHHHHHHHHHHHHHHcCCCcceEE
Q 006566 280 SMKASNPV--------VMVQAYRLLVAEMYVHGWDYPLHL 311 (640)
Q Consensus 280 SmKsSn~~--------~mV~AyRlL~~~m~~~g~dyPLHL 311 (640)
++|-|-.. ...+.+..+++.+++.|+|| +|+
T Consensus 222 ~vRis~~~~~~~~~~~~~~ee~~~~~~~l~~~g~d~-i~v 260 (338)
T cd02933 222 GIRLSPFGTFNDMGDSDPEATFSYLAKELNKRGLAY-LHL 260 (338)
T ss_pred EEEECccccCCCCCCCCCHHHHHHHHHHHHHcCCcE-EEE
Confidence 77776421 24566667778877777765 344
No 423
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=41.68 E-value=2.2e+02 Score=28.78 Aligned_cols=116 Identities=20% Similarity=0.161 Sum_probs=76.2
Q ss_pred CCHHHHHHHHHHHHH-cCCCEEEEecCCHHHHHHHHHHHHHhhcCCCCcceeeccC-----CCHHHHHHHhhhcCceeeC
Q 006566 115 KDVAGTVEEVMRIAD-QGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIH-----FAPSVALRVAECFDKIRVN 188 (640)
Q Consensus 115 ~Dv~atv~Qi~rl~~-aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~iPLVADIH-----F~~~~Al~Aa~~v~KVRIN 188 (640)
.+.....+++.++.. ++..++=|.+.+....+.+.+..+.+.+.|+.-..+-+++ .+|.+ .+.++.++-|=++
T Consensus 12 ~~~~~i~~~~~~~ag~~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~v~~~~~~~~~~a~~~~~-~~~l~~ad~I~~~ 90 (217)
T cd03145 12 YDNRAILQRFVARAGGAGARIVVIPAASEEPAEVGEEYRDVFERLGAREVEVLVIDSREAANDPEV-VARLRDADGIFFT 90 (217)
T ss_pred cCHHHHHHHHHHHcCCCCCcEEEEeCCCcChhHHHHHHHHHHHHcCCceeEEeccCChHHcCCHHH-HHHHHhCCEEEEe
Confidence 355666777766664 6788888888887777778888888888887644444444 44543 4567779999999
Q ss_pred CCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHh
Q 006566 189 PGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYY 251 (640)
Q Consensus 189 PGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ry 251 (640)
-||=-. |.+.+.. ..+...+..+=++|+++ +|+.+|+. +|..|
T Consensus 91 GG~~~~--------------~~~~l~~--t~l~~~l~~~~~~G~v~-~G~SAGA~---i~~~~ 133 (217)
T cd03145 91 GGDQLR--------------ITSALGG--TPLLDALRKVYRGGVVI-GGTSAGAA---VMSDT 133 (217)
T ss_pred CCcHHH--------------HHHHHcC--ChHHHHHHHHHHcCCEE-EEccHHHH---hhhhc
Confidence 998633 1222221 13444455555578777 89999987 45544
No 424
>PLN02433 uroporphyrinogen decarboxylase
Probab=41.54 E-value=3.7e+02 Score=28.95 Aligned_cols=54 Identities=19% Similarity=0.197 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHcCCCEEEEe-----cCCHHHHH-----HHHHHHHHhhcCCCCcceeeccCCC
Q 006566 118 AGTVEEVMRIADQGADLVRIT-----VQGKREAD-----ACFEIKNSLVQKNYNIPLVADIHFA 171 (640)
Q Consensus 118 ~atv~Qi~rl~~aGceiVRvt-----vp~~~~A~-----~l~~I~~~L~~~g~~iPLVADIHF~ 171 (640)
+.+++-++...++|++++=+. .=+.++-+ -+++|-+.+.+++-.+|++==++-+
T Consensus 179 ~~~~~~~~~~ieaGa~~i~i~d~~~~~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~~ilh~cG~ 242 (345)
T PLN02433 179 DAVIEYVDYQIDAGAQVVQIFDSWAGHLSPVDFEEFSKPYLEKIVDEVKARHPDVPLILYANGS 242 (345)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCC
Confidence 335566677888999988666 44444433 3456666665543245665544444
No 425
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=41.44 E-value=48 Score=35.62 Aligned_cols=48 Identities=17% Similarity=0.377 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCCCcceeeccC
Q 006566 115 KDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIH 169 (640)
Q Consensus 115 ~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~iPLVADIH 169 (640)
.+.+.+++..++-.+||+|.|=+ ++.++.+.++.+.+. +++||++.+-
T Consensus 163 ~g~deAI~Ra~aY~eAGAD~ifi--~~~~~~~~i~~~~~~-----~~~Pl~~n~~ 210 (292)
T PRK11320 163 EGLDAAIERAQAYVEAGADMIFP--EAMTELEMYRRFADA-----VKVPILANIT 210 (292)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEe--cCCCCHHHHHHHHHh-----cCCCEEEEec
Confidence 46899999999999999999876 456677777777775 5688876543
No 426
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=41.35 E-value=1.9e+02 Score=32.16 Aligned_cols=109 Identities=15% Similarity=0.157 Sum_probs=65.1
Q ss_pred HHHHHHHHHHcCCCE-EEEecCCH--HHHHHH--------------HHHHHHhhcCC----CCcceeeccCCCHHHHHHH
Q 006566 120 TVEEVMRIADQGADL-VRITVQGK--READAC--------------FEIKNSLVQKN----YNIPLVADIHFAPSVALRV 178 (640)
Q Consensus 120 tv~Qi~rl~~aGcei-VRvtvp~~--~~A~~l--------------~~I~~~L~~~g----~~iPLVADIHF~~~~Al~A 178 (640)
.+..|.+|+++|-++ +.|+..+. +.-..+ +.|++.+.+.| ++.|||.++--++.-|..-
T Consensus 220 l~~~i~~L~~~gl~~~LaiSL~a~~~e~r~~i~P~~~~~~~l~~l~~~i~~~~~~~g~~V~ieyvLI~GvNDs~eda~~L 299 (368)
T PRK14456 220 ITPEIDRLATSGLKTKLAVSLHSADQEKRERLMPQAARDYPLDELREALIGYASKTGEPVTLVYMLLEGINDSPEDARKL 299 (368)
T ss_pred ChHHHHHHHHcCCCceEEEEecCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHhcCCeEEEEEEEEcCCCCCHHHHHHH
Confidence 567899999999873 77775443 222212 22333333444 5579999999887656555
Q ss_pred hhhcC----ceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCC
Q 006566 179 AECFD----KIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGS 242 (640)
Q Consensus 179 a~~v~----KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGS 242 (640)
++++. +|++=|=|-.+..+ |+.-. ++++..|.+..+++|+...|.-..|.
T Consensus 300 ~~~l~~~~~~VnlIpyn~~~~~~-~~~ps-------------~e~i~~F~~~L~~~Gi~vtvR~~~G~ 353 (368)
T PRK14456 300 IRFASRFFCKINLIDYNSIVNIK-FEPVC-------------SSTRERFRDRLLDAGLQVTVRKSYGT 353 (368)
T ss_pred HHHHhcCCCeeEEeeeccCCCCC-CCCCC-------------HHHHHHHHHHHHHCCCcEEeeCCCCc
Confidence 55533 45544444333222 43211 23355566777889999999887776
No 427
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=41.23 E-value=53 Score=29.65 Aligned_cols=108 Identities=20% Similarity=0.251 Sum_probs=52.9
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCCCcceeeccC--------CCHHHHHHHhhhcCceee
Q 006566 116 DVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIH--------FAPSVALRVAECFDKIRV 187 (640)
Q Consensus 116 Dv~atv~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~iPLVADIH--------F~~~~Al~Aa~~v~KVRI 187 (640)
|.+.-++.+.+ .+++++..+-+-...+..+.+.+.|++.|+++..+.=.. -|-.++..+++.+. +=
T Consensus 21 ~~~~l~~~i~~----~~~~~~~~~y~~~~~~~~~~~~~~L~~~g~~v~~~~~~~~~~~~k~~~D~~l~~d~~~~~~--~~ 94 (146)
T PF01936_consen 21 DFERLLEEIRK----YGPLVRIRAYGNWDDPNQKSFQEALQRAGIKVRHFPLRKRGGGGKKGVDVALAVDILELAY--EN 94 (146)
T ss_dssp -HHHHHHHHTT----TEEEEEEEEEE----HHHHHHHHHHHHHT-EEEE------S---S---HHHHHHHHHHHG----G
T ss_pred CHHHHHHHHHh----cCCeEEEEEEeeccccchhhHHHHHHhCeeeEEeeecccccccccCCcHHHHHHHHHHHhh--cc
Confidence 45555555544 677877776666666667888888988888654432211 12344444444431 11
Q ss_pred CCCCCC--chhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHH
Q 006566 188 NPGNFA--DRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSY 250 (640)
Q Consensus 188 NPGN~~--d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~r 250 (640)
+|.++. .++. -|.|+++.++++|..+-+=.-..+.|+.+.+.
T Consensus 95 ~~d~ivLvSgD~---------------------Df~~~v~~l~~~g~~V~v~~~~~~~s~~L~~~ 138 (146)
T PF01936_consen 95 PPDTIVLVSGDS---------------------DFAPLVRKLRERGKRVIVVGAEDSASEALRSA 138 (146)
T ss_dssp G-SEEEEE---G---------------------GGHHHHHHHHHH--EEEEEE-GGGS-HHHHHH
T ss_pred CCCEEEEEECcH---------------------HHHHHHHHHHHcCCEEEEEEeCCCCCHHHHHh
Confidence 234432 2222 29999999999998554433345666655443
No 428
>PF02219 MTHFR: Methylenetetrahydrofolate reductase; InterPro: IPR003171 This family includes the 5,10-methylenetetrahydrofolate reductase 1.7.99.5 from EC from bacteria and methylenetetrahydrofolate reductase 1.5.1.20 from EC from eukaryotes. The structure for this domain is known [] to be a TIM barrel.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process, 0055114 oxidation-reduction process; PDB: 3IJD_B 1B5T_B 3FSU_C 1ZPT_C 2FMO_B 3FST_C 2FMN_C 1ZP3_A 1ZP4_B 1ZRQ_B ....
Probab=41.18 E-value=29 Score=36.33 Aligned_cols=55 Identities=22% Similarity=0.373 Sum_probs=46.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCCCcceeeccC
Q 006566 113 DTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIH 169 (640)
Q Consensus 113 ~T~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~iPLVADIH 169 (640)
...|.+..++..++=.+|||+. +-+|=.=+++.+.+..+.+++.|+++|+++=|-
T Consensus 154 ~~~~~~~~~~~l~~Ki~aGA~f--~iTQ~~fd~~~~~~~~~~~~~~g~~~pIi~GI~ 208 (287)
T PF02219_consen 154 EAPDFEAELKRLKKKIDAGADF--IITQPFFDAEAFERFLDRLREAGIDVPIIPGIM 208 (287)
T ss_dssp TCSSHHHHHHHHHHHHHTTESE--EEEEE-SSHHHHHHHHHHHHHTTHTSEEEEEEE
T ss_pred cccCHHHHHHHHHHHHHCCCCE--EeccccCCHHHHHHHHHHHHHcCCCCcEEEEEe
Confidence 5667888889999999999997 567777888999999999999999999998764
No 429
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=41.10 E-value=2.3e+02 Score=28.76 Aligned_cols=58 Identities=17% Similarity=0.167 Sum_probs=38.7
Q ss_pred HhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCCCh----HHHHHHHHHHHHHHHHCCCCcEEEEEEeC
Q 006566 217 EEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSP----RGMVESAFEFARICRKLDFHNFLFSMKAS 284 (640)
Q Consensus 217 ~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGdtp----~gMVeSAle~~~i~e~~~F~diviSmKsS 284 (640)
.+.++..++.|++.|.+ .|.+..|..+.. .++ +.++++.-+..+++++.| +++.+-.-
T Consensus 84 ~~~~~~~i~~a~~lga~-~i~~~~g~~~~~------~~~~~~~~~~~~~l~~l~~~a~~~G---v~l~lE~~ 145 (258)
T PRK09997 84 RDGVAAAIRYARALGNK-KINCLVGKTPAG------FSSEQIHATLVENLRYAANMLMKED---ILLLIEPI 145 (258)
T ss_pred HHHHHHHHHHHHHhCCC-EEEECCCCCCCC------CCHHHHHHHHHHHHHHHHHHHHHcC---CEEEEEeC
Confidence 35678899999999999 366666765321 112 345666666777777765 56777653
No 430
>TIGR03247 glucar-dehydr glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized.
Probab=41.08 E-value=1.4e+02 Score=33.69 Aligned_cols=65 Identities=11% Similarity=0.095 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHHHH-cCCCEEEEecC--C-HHHHHHHHHHHHHhhcCCCCcceeeccC--CCHHHHHHHhhhcCc
Q 006566 116 DVAGTVEEVMRIAD-QGADLVRITVQ--G-KREADACFEIKNSLVQKNYNIPLVADIH--FAPSVALRVAECFDK 184 (640)
Q Consensus 116 Dv~atv~Qi~rl~~-aGceiVRvtvp--~-~~~A~~l~~I~~~L~~~g~~iPLVADIH--F~~~~Al~Aa~~v~K 184 (640)
+.++.++++.+..+ .|...+.+-+- + .++.+.++.+++.+ -++.|..|-| |++.-|+..++.++.
T Consensus 180 ~~e~~~~~a~~~~~~~Gf~a~KiKvG~~~~~~Di~~v~avRea~----~d~~L~vDAN~~wt~~~Ai~~~~~Le~ 250 (441)
T TIGR03247 180 TPEAVVRLAEAAYDRYGFRDFKLKGGVLRGEEEIEAVTALAKRF----PQARITLDPNGAWSLDEAIALCKDLKG 250 (441)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEecCCCChHHHHHHHHHHHHhC----CCCeEEEECCCCCCHHHHHHHHHHhhh
Confidence 46778899988776 59999998762 2 57889999999864 1588999998 577777777777665
No 431
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=41.03 E-value=45 Score=33.76 Aligned_cols=110 Identities=20% Similarity=0.309 Sum_probs=66.7
Q ss_pred CCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHH-HHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHh
Q 006566 101 EHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKRE-ADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVA 179 (640)
Q Consensus 101 ~~PI~VQSMt~t~T~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~-A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa 179 (640)
+-|+-|.=|...+ ...+..+.++||++|=+-+-+.+. .+.+..||+ .|+..=|. ++|.-..+.+
T Consensus 57 ~~~~DvHLMv~~P-------~~~i~~~~~~g~~~i~~H~E~~~~~~~~i~~ik~----~g~k~Gia----lnP~T~~~~~ 121 (201)
T PF00834_consen 57 DLPLDVHLMVENP-------ERYIEEFAEAGADYITFHAEATEDPKETIKYIKE----AGIKAGIA----LNPETPVEEL 121 (201)
T ss_dssp SSEEEEEEESSSG-------GGHHHHHHHHT-SEEEEEGGGTTTHHHHHHHHHH----TTSEEEEE----E-TTS-GGGG
T ss_pred CCcEEEEeeeccH-------HHHHHHHHhcCCCEEEEcccchhCHHHHHHHHHH----hCCCEEEE----EECCCCchHH
Confidence 4577777787753 356778899999977665543332 234555555 57765544 5666666655
Q ss_pred hh----cCcee---eCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCC
Q 006566 180 EC----FDKIR---VNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHG 241 (640)
Q Consensus 180 ~~----v~KVR---INPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhG 241 (640)
+. +|.|= +|||.-|. . |.. ..-+|++++-+..+++|-.+.|.|-.|
T Consensus 122 ~~~l~~vD~VlvMsV~PG~~Gq-~--f~~-------------~~~~KI~~l~~~~~~~~~~~~I~vDGG 174 (201)
T PF00834_consen 122 EPYLDQVDMVLVMSVEPGFGGQ-K--FIP-------------EVLEKIRELRKLIPENGLDFEIEVDGG 174 (201)
T ss_dssp TTTGCCSSEEEEESS-TTTSSB-----HG-------------GHHHHHHHHHHHHHHHTCGSEEEEESS
T ss_pred HHHhhhcCEEEEEEecCCCCcc-c--ccH-------------HHHHHHHHHHHHHHhcCCceEEEEECC
Confidence 53 44443 69996654 2 442 234567778888899898999999544
No 432
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=40.88 E-value=81 Score=33.30 Aligned_cols=66 Identities=23% Similarity=0.218 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHcCCCEEEEec-------CCHHHHHHHHHHHHHhhcCCCCcceeeccCC-CHHHHHHHhhh-cCceee
Q 006566 119 GTVEEVMRIADQGADLVRITV-------QGKREADACFEIKNSLVQKNYNIPLVADIHF-APSVALRVAEC-FDKIRV 187 (640)
Q Consensus 119 atv~Qi~rl~~aGceiVRvtv-------p~~~~A~~l~~I~~~L~~~g~~iPLVADIHF-~~~~Al~Aa~~-v~KVRI 187 (640)
.+++.+++++++|++.|-++- -+....+.+.+|++.+.. ++|++||--+ ++.-+.+|+.. ++.|=|
T Consensus 181 ~s~~~a~~a~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~---~ipvia~GGI~~~~d~~kal~lGAd~V~i 255 (299)
T cd02809 181 LTPEDALRAVDAGADGIVVSNHGGRQLDGAPATIDALPEIVAAVGG---RIEVLLDGGIRRGTDVLKALALGADAVLI 255 (299)
T ss_pred CCHHHHHHHHHCCCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHhcC---CCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 346778999999999998743 234578899999886432 5999999776 57777788777 777755
No 433
>COG1456 CdhE CO dehydrogenase/acetyl-CoA synthase gamma subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=40.85 E-value=4.4e+02 Score=30.02 Aligned_cols=227 Identities=16% Similarity=0.232 Sum_probs=132.8
Q ss_pred CceeEEEce----eecCCCCceEEEe----------ccCCCCCCHHHHHHHHHHHHHcCCC-----------EEEEecCC
Q 006566 87 KTRTVMVGN----VAIGSEHPIRVQT----------MTTNDTKDVAGTVEEVMRIADQGAD-----------LVRITVQG 141 (640)
Q Consensus 87 ~Tr~V~VG~----v~IGG~~PI~VQS----------Mt~t~T~Dv~atv~Qi~rl~~aGce-----------iVRvtvp~ 141 (640)
.-++|.||. |.|||+.-.---- -+-.|++|-++-++.++++++.--+ -||-+.-|
T Consensus 65 ~vkevtiG~ge~~v~iGGdeVlyRheLtffNpt~~fvdv~D~m~e~el~~r~~~I~~f~~ervGe~L~LDgvair~~Sgd 144 (467)
T COG1456 65 EVKEVTIGVGEKAVVIGGDEVLYRHELTFFNPTPMFVDVADDMDEEELVERANEIANFRKERVGEKLKLDGVAIRNRSGD 144 (467)
T ss_pred ceeEEEecCCcceeeecccceeEeeeeeeeCCCceEEECcccCCHHHHHHHHHHHHHHHHhhhcceeeeeeEEEEecCCC
Confidence 357899986 8999974322111 1346789999999999998764333 35666666
Q ss_pred H-HHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhhcCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhH
Q 006566 142 K-READACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVF 220 (640)
Q Consensus 142 ~-~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f 220 (640)
. +=|++.+.+.+ ...|++- +-|||.+-.+|++.+..-| |==|+..+. .+
T Consensus 145 pekfa~ave~v~~------~~~pv~l-~s~dpevmkaaLev~~dqk--PllYaAte~---------------------n~ 194 (467)
T COG1456 145 PEKFAEAVEKVAE------AGLPVIL-CSFDPEVMKAALEVVKDQK--PLLYAATED---------------------NW 194 (467)
T ss_pred HHHHHHHHHHHHh------cCCcEEE-EeCCHHHHHHHHHHhhccC--ceeeecccc---------------------cH
Confidence 5 45777777776 3466543 5799999888888865443 545555333 47
Q ss_pred HHHHHHHHHcCCeEEEeeCC-CCCcHhHHHHhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEEe----CChhhHHH---H
Q 006566 221 SPLVEKCKKYGRAVRIGTNH-GSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKA----SNPVVMVQ---A 292 (640)
Q Consensus 221 ~~lV~~~Ke~g~aIRIGvNh-GSLs~ril~ryGdtp~gMVeSAle~~~i~e~~~F~diviSmKs----Sn~~~mV~---A 292 (640)
+++.+.+-++++|+ ++.+ +-| +.|.- .+.-|.+.|-+|||+-=-. -+...+.. -
T Consensus 195 ~e~~klav~y~vpl--vl~a~~dl------------~~lk~----la~~~~~~Gi~divLdPgT~p~~egl~~T~d~~v~ 256 (467)
T COG1456 195 KEFAKLAVEYKVPL--VLSAFNDL------------DDLKN----LAVTYAQAGIKDIVLDPGTYPGGEGLKDTFDNFVM 256 (467)
T ss_pred HHHHHHHhhcCCcE--EEeccCCH------------HHHHH----HHHHHHHcCCceEEecCCcccCccchhHHHHHHHH
Confidence 78899999999998 4422 222 23332 3455778899999985211 01111111 1
Q ss_pred HHHHH-HHHHHcCCCcce-EEEeecCCCCCcceeehH---HHHHHHhhhcCCcEEEeecCCCCchhhHHHHHHHhhcccC
Q 006566 293 YRLLV-AEMYVHGWDYPL-HLGVTEAGEGEDGRMKSA---IGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRLANLGMRA 367 (640)
Q Consensus 293 yRlL~-~~m~~~g~dyPL-HLGVTEAG~gedGrIKSA---iGIG~LL~DGIGDTIRVSLTedP~~Ei~va~~ILq~~~R~ 367 (640)
-|+.+ +. ....+-||+ -+-+|--+-++|--|+.+ .-|.+-|.---||-+-.- +-+||+-.|+ +-+|.
T Consensus 257 iRr~aIe~-~d~~~~yPim~~p~~~~~~~~dd~V~a~~~Ea~iAs~~~~rYaDilI~~-~~e~w~~mPv------ltlrq 328 (467)
T COG1456 257 IRRAAIEG-FDKDFAYPIMALPFTAWMFGEDDPVSASYWEAVIASTFMNRYADILILH-SLEPWALMPV------LTLRQ 328 (467)
T ss_pred HHHHHhhc-cCccccceeeecchhhhhhccCchHHHHHHHHHHHHHHHHhhcceEEec-ccchhhhcch------hhhhh
Confidence 12222 22 122255887 333443344555544443 235666777777765443 3356665555 55555
Q ss_pred cc
Q 006566 368 AE 369 (640)
Q Consensus 368 CG 369 (640)
|-
T Consensus 329 ~i 330 (467)
T COG1456 329 CI 330 (467)
T ss_pred hc
Confidence 53
No 434
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=40.80 E-value=4.3e+02 Score=27.32 Aligned_cols=177 Identities=17% Similarity=0.310 Sum_probs=109.3
Q ss_pred cCCCCceEEEeccC---CCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCCCcceee--------
Q 006566 98 IGSEHPIRVQTMTT---NDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVA-------- 166 (640)
Q Consensus 98 IGG~~PI~VQSMt~---t~T~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~iPLVA-------- 166 (640)
|||+ .+.|++|.. .+.++.+-+-.|+++|.+| |+|=..=.+.+ .-+..+.+.+ . +.++++
T Consensus 19 I~gd-~v~V~~l~p~~g~dpH~y~~~p~d~~~l~~A--Dliv~~G~~lE--~~~~k~~~~~--~--~~~v~~~~~~~~~~ 89 (264)
T cd01020 19 VGGD-HVEVTSIITNPDVDPHDFEPTPTDAAKVSTA--DIVVYNGGGYD--PWMTKLLADT--K--DVIVIAADLDGHDD 89 (264)
T ss_pred HcCC-ceEEEEecCCCCCCcccCCCCHHHHHHHhhC--CEEEEeCCCch--HHHHHHHHhc--C--CceEEeeecccccC
Confidence 5654 589999987 5669999999999999876 77655545554 3556666543 1 123332
Q ss_pred ----ccC--CCHHHHHHHhhh-cCce-eeCCCCCCchhhhccccccc--hHHHHHHHhhhHhhHHHHHHHHHHcCCeEEE
Q 006566 167 ----DIH--FAPSVALRVAEC-FDKI-RVNPGNFADRRAQFEQLEYT--DDEYQKELQHIEEVFSPLVEKCKKYGRAVRI 236 (640)
Q Consensus 167 ----DIH--F~~~~Al~Aa~~-v~KV-RINPGN~~d~~k~F~~~eYt--deeY~~Ele~I~~~f~~lV~~~Ke~g~aIRI 236 (640)
|=| .+|..|...++. .+++ .+.|-|=. .|. -++|.++|+.+.+++...+..++. +. +
T Consensus 90 ~~~~dPH~Wldp~n~~~~a~~I~~~L~~~dP~~~~---------~y~~N~~~~~~~l~~l~~~~~~~~~~~~~--~~--~ 156 (264)
T cd01020 90 KEGDNPHLWYDPETMSKVANALADALVKADPDNKK---------YYQANAKKFVASLKPLAAKIAELSAKYKG--AP--V 156 (264)
T ss_pred CCCCCCceecCHhHHHHHHHHHHHHHHHhCcccHH---------HHHHHHHHHHHHHHHHHHHHHHHHhhCCC--Ce--E
Confidence 333 357777777776 4443 36787621 122 356999999999999988887754 33 5
Q ss_pred eeCCCCCcHhHHHHhCC---ChHHHHH--------HH---HHHHHHHHHCCCCcEEEEEEeCChhhHHHHHHHHHHH
Q 006566 237 GTNHGSLSDRIMSYYGD---SPRGMVE--------SA---FEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAE 299 (640)
Q Consensus 237 GvNhGSLs~ril~ryGd---tp~gMVe--------SA---le~~~i~e~~~F~diviSmKsSn~~~mV~AyRlL~~~ 299 (640)
=+.|.++ .-+.++||- ++.+.++ |+ .+..+.+++.+-.=|...- .++ ..+++....+++.
T Consensus 157 v~~H~af-~Y~~~~yGl~~~~~~~~~~~~~~~~~ps~~~l~~l~~~ik~~~v~~if~e~-~~~-~k~~~~l~~la~~ 230 (264)
T cd01020 157 AATEPVF-DYLLDALGMKERTPKGYTATTESETEPSPADIAAFQNAIKNRQIDALIVNP-QQA-SSATTNITGLAKR 230 (264)
T ss_pred EEeCchH-HHHHHHCCCcccCHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCCCEEEeCC-CCC-cHHHHHHHHHHHH
Confidence 6689888 447888983 3444321 22 4566667776665443332 222 2344444445555
No 435
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=40.79 E-value=4.4e+02 Score=28.12 Aligned_cols=25 Identities=8% Similarity=0.225 Sum_probs=21.8
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEe
Q 006566 114 TKDVAGTVEEVMRIADQGADLVRIT 138 (640)
Q Consensus 114 T~Dv~atv~Qi~rl~~aGceiVRvt 138 (640)
..+.+..++.++.+.+.|+.-+-++
T Consensus 71 ~ls~eei~~~~~~~~~~G~~~i~l~ 95 (340)
T TIGR03699 71 VLSVEEILQKIEELVAYGGTQILLQ 95 (340)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEe
Confidence 4688999999999999999988886
No 436
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=40.79 E-value=1.2e+02 Score=32.50 Aligned_cols=94 Identities=17% Similarity=0.244 Sum_probs=62.2
Q ss_pred cCCCCceEEE-eccC--CCCCCHHHHHHHHHHHHHcCCCEEEEecCC----H-----------HH---HHHHHHHHHHhh
Q 006566 98 IGSEHPIRVQ-TMTT--NDTKDVAGTVEEVMRIADQGADLVRITVQG----K-----------RE---ADACFEIKNSLV 156 (640)
Q Consensus 98 IGG~~PI~VQ-SMt~--t~T~Dv~atv~Qi~rl~~aGceiVRvtvp~----~-----------~~---A~~l~~I~~~L~ 156 (640)
+|.+-||.|= |... -.-.|.+.+++=+++|+++|.++|=|+.-. . .+ .+..+.||+.
T Consensus 213 vG~d~~v~vris~~~~~~~g~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~-- 290 (338)
T cd04733 213 VGPGFPVGIKLNSADFQRGGFTEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKV-- 290 (338)
T ss_pred cCCCCeEEEEEcHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHH--
Confidence 3556676652 2110 012467788888899999999999865321 1 01 3455667775
Q ss_pred cCCCCcceeeccCC-CHHHHHHHhhh--cCceeeCCCCCCchh
Q 006566 157 QKNYNIPLVADIHF-APSVALRVAEC--FDKIRVNPGNFADRR 196 (640)
Q Consensus 157 ~~g~~iPLVADIHF-~~~~Al~Aa~~--v~KVRINPGN~~d~~ 196 (640)
+++|++++--+ ++..|..+++. +|-|=+-=+-++|++
T Consensus 291 ---v~iPVi~~G~i~t~~~a~~~l~~g~aD~V~lgR~~iadP~ 330 (338)
T cd04733 291 ---TKTPLMVTGGFRTRAAMEQALASGAVDGIGLARPLALEPD 330 (338)
T ss_pred ---cCCCEEEeCCCCCHHHHHHHHHcCCCCeeeeChHhhhCcc
Confidence 78999999887 68889888884 777766555666544
No 437
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=40.79 E-value=68 Score=34.89 Aligned_cols=49 Identities=18% Similarity=0.221 Sum_probs=35.8
Q ss_pred HHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCCCcc-eeeccCC
Q 006566 121 VEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIP-LVADIHF 170 (640)
Q Consensus 121 v~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~iP-LVADIHF 170 (640)
++.+++..+.|.+.|||++. ..+++.+.+..+..++.|+.+= -+.|.|-
T Consensus 91 ~~dl~~a~~~gvd~iri~~~-~~e~~~~~~~i~~ak~~G~~v~~~l~~a~~ 140 (337)
T PRK08195 91 VDDLKMAYDAGVRVVRVATH-CTEADVSEQHIGLARELGMDTVGFLMMSHM 140 (337)
T ss_pred HHHHHHHHHcCCCEEEEEEe-cchHHHHHHHHHHHHHCCCeEEEEEEeccC
Confidence 56788999999999999984 5556677777777888898732 2345553
No 438
>TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB. Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme.
Probab=40.76 E-value=4.2e+02 Score=29.59 Aligned_cols=29 Identities=17% Similarity=0.352 Sum_probs=22.8
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCCH
Q 006566 114 TKDVAGTVEEVMRIADQGADLVRITVQGK 142 (640)
Q Consensus 114 T~Dv~atv~Qi~rl~~aGceiVRvtvp~~ 142 (640)
.++.+..+++++.+.+.|+.-|.++-++.
T Consensus 173 sr~~e~I~~Ei~~l~~~g~~ei~l~~~~~ 201 (438)
T TIGR01574 173 SRPFDDILQEVQKLAEKGVREITLLGQNV 201 (438)
T ss_pred ccCHHHHHHHHHHHHHcCCeEEEEEeccc
Confidence 46788889999999999987777775543
No 439
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=40.71 E-value=95 Score=35.75 Aligned_cols=52 Identities=23% Similarity=0.333 Sum_probs=35.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCCCcceee
Q 006566 112 NDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVA 166 (640)
Q Consensus 112 t~T~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~iPLVA 166 (640)
..|-+.+..++.+.++.+.||||+.+++.-....+++.-++... + .+.|+|+
T Consensus 146 ~~tP~~~el~~~~~~~~~~gaDi~Kia~~~~~~~D~~~ll~~~~-~--~~~p~i~ 197 (529)
T PLN02520 146 ENTPSVEELGNLVARIQATGADIVKIATTALDITDVARMFQITV-H--SQVPTIG 197 (529)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCEEEEecCCCCHHHHHHHHHHHh-h--cCCCEEE
Confidence 44555778889999999999999999876555555554443221 1 3678774
No 440
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=40.63 E-value=29 Score=38.04 Aligned_cols=47 Identities=17% Similarity=0.384 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCC-Ccceee
Q 006566 117 VAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNY-NIPLVA 166 (640)
Q Consensus 117 v~atv~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~-~iPLVA 166 (640)
++...+|....++||||+| +|+-=-=--.+.||+.|.+.|+ ++|+++
T Consensus 146 l~~Lak~Al~~A~AGADiV---APSdMMDGrV~aIR~aLd~~g~~~v~ImS 193 (324)
T PF00490_consen 146 LERLAKQALSHAEAGADIV---APSDMMDGRVGAIREALDEAGFSDVPIMS 193 (324)
T ss_dssp HHHHHHHHHHHHHHT-SEE---EE-S--TTHHHHHHHHHHHTTCTTSEEEE
T ss_pred HHHHHHHHHHHHHhCCCee---ccccccCCHHHHHHHHHHhCCCCCccEEe
No 441
>PRK13599 putative peroxiredoxin; Provisional
Probab=40.06 E-value=64 Score=32.79 Aligned_cols=55 Identities=15% Similarity=0.147 Sum_probs=37.6
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHH-HHHHHHhhcCCCCcceeeccC
Q 006566 114 TKDVAGTVEEVMRIADQGADLVRITVQGKREADAC-FEIKNSLVQKNYNIPLVADIH 169 (640)
Q Consensus 114 T~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~A~~l-~~I~~~L~~~g~~iPLVADIH 169 (640)
|....+-.+-..++.+.||++|-|++.+..+-.+. +.|++. -..+++.|+++|-+
T Consensus 45 t~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~-~~~~i~fPil~D~~ 100 (215)
T PRK13599 45 TTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDN-TNIAIPFPVIADDL 100 (215)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHh-cCCCCceeEEECCC
Confidence 34444444455566778999999999998766654 346652 23467899999954
No 442
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=39.97 E-value=1.9e+02 Score=31.63 Aligned_cols=78 Identities=13% Similarity=0.051 Sum_probs=53.6
Q ss_pred HHHHHHHHcCCe-EEEeeCCCCCcHhH-HHHhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEEeCChhhHHHHHHHHHHH
Q 006566 222 PLVEKCKKYGRA-VRIGTNHGSLSDRI-MSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAE 299 (640)
Q Consensus 222 ~lV~~~Ke~g~a-IRIGvNhGSLs~ri-l~ryGdtp~gMVeSAle~~~i~e~~~F~diviSmKsSn~~~mV~AyRlL~~~ 299 (640)
+-++.+.+.|+. |||-+ |.|+.. ..++|-+++..++.+.+.++.+++.|++ +.+++-.+. ....+.+..++++
T Consensus 75 ~di~~a~~~g~~~i~i~~---~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~-v~~~~eda~-r~~~~~l~~~~~~ 149 (363)
T TIGR02090 75 KDIDKAIDCGVDSIHTFI---ATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLI-VEFSAEDAT-RTDIDFLIKVFKR 149 (363)
T ss_pred HHHHHHHHcCcCEEEEEE---cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCE-EEEEEeecC-CCCHHHHHHHHHH
Confidence 347778888875 44433 455543 4567889999999999999999999985 777763332 2345666666666
Q ss_pred HHHcC
Q 006566 300 MYVHG 304 (640)
Q Consensus 300 m~~~g 304 (640)
+.+.|
T Consensus 150 ~~~~g 154 (363)
T TIGR02090 150 AEEAG 154 (363)
T ss_pred HHhCC
Confidence 55444
No 443
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=39.91 E-value=2.5e+02 Score=28.93 Aligned_cols=178 Identities=15% Similarity=0.175 Sum_probs=97.3
Q ss_pred HHHHHHHHHHcCCCEEEEe------cCCHHHHHHHHHHHHHhhcCCCCcceeeccCCC-HHHHHHHhhh-cCceeeCCCC
Q 006566 120 TVEEVMRIADQGADLVRIT------VQGKREADACFEIKNSLVQKNYNIPLVADIHFA-PSVALRVAEC-FDKIRVNPGN 191 (640)
Q Consensus 120 tv~Qi~rl~~aGceiVRvt------vp~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~-~~~Al~Aa~~-v~KVRINPGN 191 (640)
-++.++++.+.|++-+=++ .......+.+++|++. +++|+.++--.. +.-+..+++. +++|=|+=..
T Consensus 32 p~~~a~~~~~~G~~~l~v~Dl~~~~~~~~~n~~~i~~i~~~-----~~~pv~~~GGi~s~~d~~~~~~~Ga~~vivgt~~ 106 (254)
T TIGR00735 32 PVELAQRYDEEGADELVFLDITASSEGRTTMIDVVERTAET-----VFIPLTVGGGIKSIEDVDKLLRAGADKVSINTAA 106 (254)
T ss_pred HHHHHHHHHHcCCCEEEEEcCCcccccChhhHHHHHHHHHh-----cCCCEEEECCCCCHHHHHHHHHcCCCEEEEChhH
Confidence 3456667778999877665 2333445566777664 789999987766 7788888887 8998777555
Q ss_pred CCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcC-CeEEEeeC--CCCCc---H-hHHHHhCCChHHHHHHHHH
Q 006566 192 FADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYG-RAVRIGTN--HGSLS---D-RIMSYYGDSPRGMVESAFE 264 (640)
Q Consensus 192 ~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g-~aIRIGvN--hGSLs---~-ril~ryGdtp~gMVeSAle 264 (640)
+.+++. +.++ ++++| -.|=+.+. -|-++ . ++.- +|.. +.--+...+
T Consensus 107 ~~~p~~----------------------~~~~---~~~~~~~~iv~slD~~~g~~~~~~~~~v~i-~gw~-~~~~~~~~~ 159 (254)
T TIGR00735 107 VKNPEL----------------------IYEL---ADRFGSQCIVVAIDAKRVYVNSYCWYEVYI-YGGR-ESTGLDAVE 159 (254)
T ss_pred hhChHH----------------------HHHH---HHHcCCCCEEEEEEeccCCCCCCccEEEEE-eCCc-ccCCCCHHH
Confidence 555331 3333 33333 12333332 22111 0 1111 1110 111234478
Q ss_pred HHHHHHHCCCCcEEEEEEeCCh---hhHHHHHHHHHHHHHHcCCCcceEEEeecCCCCCcceeehHHHHHHHhhhcCCcE
Q 006566 265 FARICRKLDFHNFLFSMKASNP---VVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDT 341 (640)
Q Consensus 265 ~~~i~e~~~F~diviSmKsSn~---~~mV~AyRlL~~~m~~~g~dyPLHLGVTEAG~gedGrIKSAiGIG~LL~DGIGDT 341 (640)
+++.+++.|++.|.++-=+++- -.-...++.+.+. .+.|+-. .|=|.|.-.+-.++..|==|.
T Consensus 160 ~~~~l~~~G~~~iivt~i~~~g~~~g~~~~~~~~i~~~-----~~ipvia---------~GGi~s~~di~~~~~~g~~dg 225 (254)
T TIGR00735 160 WAKEVEKLGAGEILLTSMDKDGTKSGYDLELTKAVSEA-----VKIPVIA---------SGGAGKPEHFYEAFTKGKADA 225 (254)
T ss_pred HHHHHHHcCCCEEEEeCcCcccCCCCCCHHHHHHHHHh-----CCCCEEE---------eCCCCCHHHHHHHHHcCCcce
Confidence 8999999999999886422210 0013444555444 5566533 144555555555555543344
Q ss_pred EE
Q 006566 342 IR 343 (640)
Q Consensus 342 IR 343 (640)
+-
T Consensus 226 v~ 227 (254)
T TIGR00735 226 AL 227 (254)
T ss_pred ee
Confidence 43
No 444
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=39.84 E-value=49 Score=35.42 Aligned_cols=48 Identities=15% Similarity=0.346 Sum_probs=38.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCCCcceeeccC
Q 006566 115 KDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIH 169 (640)
Q Consensus 115 ~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~iPLVADIH 169 (640)
.+++.+++..++-.+||+|.|=+ ++.++.+-++.+.+. +++||++.+.
T Consensus 158 ~g~deAI~Ra~ay~~AGAD~vfi--~g~~~~e~i~~~~~~-----i~~Pl~~n~~ 205 (285)
T TIGR02317 158 EGLDAAIERAKAYVEAGADMIFP--EALTSLEEFRQFAKA-----VKVPLLANMT 205 (285)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEe--CCCCCHHHHHHHHHh-----cCCCEEEEec
Confidence 46899999999999999999877 455566677788875 6788876653
No 445
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=39.83 E-value=90 Score=36.65 Aligned_cols=74 Identities=18% Similarity=0.282 Sum_probs=51.7
Q ss_pred eccCCCCCCHHHHHHHHHHHHHcCCCEEEEe-cCCH----HHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHH----HH
Q 006566 108 TMTTNDTKDVAGTVEEVMRIADQGADLVRIT-VQGK----READACFEIKNSLVQKNYNIPLVADIHFAPSVAL----RV 178 (640)
Q Consensus 108 SMt~t~T~Dv~atv~Qi~rl~~aGceiVRvt-vp~~----~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al----~A 178 (640)
|||.++-.|.+.-++-++++.++||+.|++. +-+. +-.+-++.||+. +++||-.-.|-+.-+|. +|
T Consensus 139 ~~t~~p~~~~~~~~~~~~~~~~~Gad~I~i~Dt~G~~~P~~v~~lv~~lk~~-----~~~pi~~H~Hnt~Gla~An~laA 213 (582)
T TIGR01108 139 SYTTSPVHTLETYLDLAEELLEMGVDSICIKDMAGILTPKAAYELVSALKKR-----FGLPVHLHSHATTGMAEMALLKA 213 (582)
T ss_pred EeccCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHHh-----CCCceEEEecCCCCcHHHHHHHH
Confidence 6666666799999999999999999999887 2222 233344455543 56898777777766665 67
Q ss_pred hhh-cCcee
Q 006566 179 AEC-FDKIR 186 (640)
Q Consensus 179 a~~-v~KVR 186 (640)
+++ ++-|=
T Consensus 214 veaGa~~vd 222 (582)
T TIGR01108 214 IEAGADGID 222 (582)
T ss_pred HHhCCCEEE
Confidence 776 76655
No 446
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=39.82 E-value=2.6e+02 Score=29.10 Aligned_cols=128 Identities=18% Similarity=0.248 Sum_probs=78.2
Q ss_pred HHHHHHHhhh-cCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHH
Q 006566 172 PSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSY 250 (640)
Q Consensus 172 ~~~Al~Aa~~-v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~r 250 (640)
...+..|+++ .+=+=.+||-+.|.. ....|.+.|+++|+.+.| -+|.+
T Consensus 75 ~e~~~~aL~aGk~Vvi~s~~Al~d~~----------------------~~~~L~~~A~~~g~~l~v--~sga~------- 123 (265)
T PRK13303 75 KEHVVPILKAGIDCAVISVGALADEA----------------------LRERLEQAAEAGGARLHL--LSGAI------- 123 (265)
T ss_pred HHHHHHHHHcCCCEEEeChHHhcCHH----------------------HHHHHHHHHHHCCCEEEE--eChHh-------
Confidence 3667777777 666767999887633 146688999999998777 23332
Q ss_pred hCCChHHHHHHHHHHHHHHHHCCCCcEEEEEEeCChhhHHHHHHHHHHHHHHcCCCcceEEEeecCCCCCcceeehHHHH
Q 006566 251 YGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGI 330 (640)
Q Consensus 251 yGdtp~gMVeSAle~~~i~e~~~F~diviSmKsSn~~~mV~AyRlL~~~m~~~g~dyPLHLGVTEAG~gedGrIKSAiGI 330 (640)
-.++.++..+..+++.+.+ +..++.. +||.=. .+.++| .. .+||.-...+|..+-+++.
T Consensus 124 ----------gg~d~l~~~~~g~~~~v~~--~~~k~p~---~~~~~~---~~~~~d-l~--~~~~~~~~f~G~a~ea~~~ 182 (265)
T PRK13303 124 ----------GGIDALAAAKEGGLDEVTY--TGRKPPK---SWRGTP---AEQLCD-LD--ALTEPTVIFEGSAREAARL 182 (265)
T ss_pred ----------hCHHHHHHHHhCCceEEEE--EEecChh---HhCcCh---hHhccc-cc--ccccCeEEEEeCHHHHHHH
Confidence 2266777777888887766 5555443 333211 112445 22 2455555556666655553
Q ss_pred --------HHHhhhcCC-cEEEeecCCCCc
Q 006566 331 --------GTLLQDGLG-DTIRVSLTEPPE 351 (640)
Q Consensus 331 --------G~LL~DGIG-DTIRVSLTedP~ 351 (640)
.++=+-|+| |-.+|.|-.||.
T Consensus 183 ~p~n~nvaaa~~la~~g~d~~~v~~~adp~ 212 (265)
T PRK13303 183 FPKNANVAATVALAGLGLDRTRVELIADPA 212 (265)
T ss_pred CCchhhHHHHHHHhccCccceEEEEEECCC
Confidence 234446776 777777777775
No 447
>cd06333 PBP1_ABC-type_HAAT_like Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. This subgroup includes the type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. Members of this subgroup are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=39.79 E-value=4.2e+02 Score=26.91 Aligned_cols=72 Identities=15% Similarity=0.152 Sum_probs=44.0
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCCCccee-eccCCCHHHHHHHhhhcCceee
Q 006566 109 MTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLV-ADIHFAPSVALRVAECFDKIRV 187 (640)
Q Consensus 109 Mt~t~T~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~iPLV-ADIHF~~~~Al~Aa~~v~KVRI 187 (640)
..+..+.|.. .++.++.+.++|.|=+...+...+..++ +|++.|+++|++ .+...++.+...+-+..+.+..
T Consensus 169 ~~~~~~~d~~---~~~~~l~~~~pdaIi~~~~~~~~~~~~~----~l~~~g~~~p~~~~~~~~~~~~~~~~g~~~~g~~~ 241 (312)
T cd06333 169 RYGRTDTSVT---AQLLKIRAARPDAVLIWGSGTPAALPAK----NLRERGYKGPIYQTHGVASPDFLRLAGKAAEGAIL 241 (312)
T ss_pred eeCCCCcCHH---HHHHHHHhCCCCEEEEecCCcHHHHHHH----HHHHcCCCCCEEeecCcCcHHHHHHhhHhhcCcEe
Confidence 3333445654 4555666788998877655544444444 455569999998 5555666665555455677764
No 448
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=39.74 E-value=5.6e+02 Score=28.28 Aligned_cols=140 Identities=17% Similarity=0.202 Sum_probs=79.9
Q ss_pred CHHHHHHHHHHHHHc--CCCEEEEe----cCCHHHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhhcCceeeCC
Q 006566 116 DVAGTVEEVMRIADQ--GADLVRIT----VQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNP 189 (640)
Q Consensus 116 Dv~atv~Qi~rl~~a--GceiVRvt----vp~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~v~KVRINP 189 (640)
=+++-.++|...... |..+=+|- +|+.=.++.|.+|-+.+++ ..|+..|. ++ .+=.||
T Consensus 54 Y~~~l~~ei~~~~~~~~~~~i~siy~GGGTPs~L~~~~L~~ll~~i~~---~~~~~~~~-----------ei--t~E~~p 117 (394)
T PRK08898 54 YLDALRADLEQALPLVWGRQVHTVFIGGGTPSLLSAAGLDRLLSDVRA---LLPLDPDA-----------EI--TLEANP 117 (394)
T ss_pred HHHHHHHHHHHHHHhccCCceeEEEECCCCcCCCCHHHHHHHHHHHHH---hCCCCCCC-----------eE--EEEECC
Confidence 345666666644322 44444443 7777777777777766543 23544332 12 133599
Q ss_pred CCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCC--ChHHHHHHHHHHHH
Q 006566 190 GNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGD--SPRGMVESAFEFAR 267 (640)
Q Consensus 190 GN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGd--tp~gMVeSAle~~~ 267 (640)
+++-. + .++..|+.|+- ||-+.-=|.+++++++.|- ++ +.+.+-++
T Consensus 118 ~~~~~-e--------------------------~L~~l~~~Gvn-risiGvQS~~~~~L~~l~R~~~~----~~~~~~i~ 165 (394)
T PRK08898 118 GTFEA-E--------------------------KFAQFRASGVN-RLSIGIQSFNDAHLKALGRIHDG----AEARAAIE 165 (394)
T ss_pred CCCCH-H--------------------------HHHHHHHcCCC-eEEEecccCCHHHHHHhCCCCCH----HHHHHHHH
Confidence 99853 2 25677778876 5555557888999999883 43 44555555
Q ss_pred HHHHCCCCcEEEEEEeCChhhHHHHHHHHHHHHHHcC
Q 006566 268 ICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHG 304 (640)
Q Consensus 268 i~e~~~F~diviSmKsSn~~~mV~AyRlL~~~m~~~g 304 (640)
.+++. |.++.+.+=--=|-.+.+.++.-.+.+.+.+
T Consensus 166 ~~~~~-~~~v~~dlI~GlPgqt~~~~~~~l~~~~~l~ 201 (394)
T PRK08898 166 IAAKH-FDNFNLDLMYALPGQTLDEALADVETALAFG 201 (394)
T ss_pred HHHHh-CCceEEEEEcCCCCCCHHHHHHHHHHHHhcC
Confidence 66664 7666555533323344555555444444334
No 449
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=39.70 E-value=78 Score=36.24 Aligned_cols=77 Identities=18% Similarity=0.296 Sum_probs=51.6
Q ss_pred eccCCCCCCHHHHHHHHHHHHHcCCCEEEEe----cCCH-HHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHH----HH
Q 006566 108 TMTTNDTKDVAGTVEEVMRIADQGADLVRIT----VQGK-READACFEIKNSLVQKNYNIPLVADIHFAPSVAL----RV 178 (640)
Q Consensus 108 SMt~t~T~Dv~atv~Qi~rl~~aGceiVRvt----vp~~-~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al----~A 178 (640)
|+|.++-.+.+.-++-++++.++||+.|+|. .-.+ +-.+-++.||+. +++||-.-.|-+.-+|. +|
T Consensus 143 ~~t~~p~~t~e~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~Lv~~lk~~-----~~vpI~~H~Hnt~GlA~AN~laA 217 (467)
T PRK14041 143 SYTVSPVHTLEYYLEFARELVDMGVDSICIKDMAGLLTPKRAYELVKALKKK-----FGVPVEVHSHCTTGLASLAYLAA 217 (467)
T ss_pred EeccCCCCCHHHHHHHHHHHHHcCCCEEEECCccCCcCHHHHHHHHHHHHHh-----cCCceEEEecCCCCcHHHHHHHH
Confidence 5555555678888999999999999988886 2222 333445555553 56898766666655554 67
Q ss_pred hhh-cCcee--eCC
Q 006566 179 AEC-FDKIR--VNP 189 (640)
Q Consensus 179 a~~-v~KVR--INP 189 (640)
+++ ++-|= +||
T Consensus 218 ieaGad~vD~sv~~ 231 (467)
T PRK14041 218 VEAGADMFDTAISP 231 (467)
T ss_pred HHhCCCEEEeeccc
Confidence 777 77665 554
No 450
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=39.65 E-value=3e+02 Score=28.19 Aligned_cols=76 Identities=11% Similarity=0.099 Sum_probs=41.2
Q ss_pred hhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhC-CCh---HHHHHHHHHHHHHHHHCCCCcEEEEEEe--CChh
Q 006566 214 QHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYG-DSP---RGMVESAFEFARICRKLDFHNFLFSMKA--SNPV 287 (640)
Q Consensus 214 e~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryG-dtp---~gMVeSAle~~~i~e~~~F~diviSmKs--Sn~~ 287 (640)
++..+.++..++.|++.|.+ +|.++.+... |+ ++. +-++++--+.++++++.|. .+.+-. ++..
T Consensus 90 ~~~~~~~~~~i~~a~~lG~~-~v~~~~~~~~------~~~~~~~~~~~~~~~l~~l~~~A~~~Gv---~l~lE~~~~~~~ 159 (279)
T TIGR00542 90 QQGLEIMEKAIQLARDLGIR-TIQLAGYDVY------YEEHDEETRRRFREGLKEAVELAARAQV---TLAVEIMDTPFM 159 (279)
T ss_pred HHHHHHHHHHHHHHHHhCCC-EEEecCcccc------cCcCCHHHHHHHHHHHHHHHHHHHHcCC---EEEEeeCCCchh
Confidence 33345577789999999987 5666433211 23 222 3355555566677777665 444443 3333
Q ss_pred hHHHHHHHHHHH
Q 006566 288 VMVQAYRLLVAE 299 (640)
Q Consensus 288 ~mV~AyRlL~~~ 299 (640)
.+......+++.
T Consensus 160 ~t~~~~~~li~~ 171 (279)
T TIGR00542 160 SSISKWLKWDHY 171 (279)
T ss_pred cCHHHHHHHHHH
Confidence 334444445554
No 451
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=39.61 E-value=2.5e+02 Score=31.31 Aligned_cols=75 Identities=11% Similarity=0.168 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHcC--CCEEEEecCCH---HHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhh-cCcee--eCC
Q 006566 118 AGTVEEVMRIADQG--ADLVRITVQGK---READACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIR--VNP 189 (640)
Q Consensus 118 ~atv~Qi~rl~~aG--ceiVRvtvp~~---~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~-v~KVR--INP 189 (640)
+...+.+..|.++| .|+|=|-+-.- .-.+.++.||+. --+.++||===-+|..|..++++ +|.|+ |-|
T Consensus 106 ~~d~er~~~L~~a~~~~d~iviD~AhGhs~~~i~~ik~ir~~----~p~~~viaGNV~T~e~a~~Li~aGAD~ikVgiGp 181 (343)
T TIGR01305 106 DNDLEKMTSILEAVPQLKFICLDVANGYSEHFVEFVKLVREA----FPEHTIMAGNVVTGEMVEELILSGADIVKVGIGP 181 (343)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHhh----CCCCeEEEecccCHHHHHHHHHcCCCEEEEcccC
Confidence 56689999999996 99988876544 334455566653 22488888766789999999999 99888 459
Q ss_pred CCCCchh
Q 006566 190 GNFADRR 196 (640)
Q Consensus 190 GN~~d~~ 196 (640)
|-+-..+
T Consensus 182 GSicttR 188 (343)
T TIGR01305 182 GSVCTTR 188 (343)
T ss_pred CCcccCc
Confidence 9876544
No 452
>PRK02714 O-succinylbenzoate synthase; Provisional
Probab=39.56 E-value=2.5e+02 Score=29.97 Aligned_cols=55 Identities=13% Similarity=0.149 Sum_probs=41.4
Q ss_pred CCCcceeeccCC-CHHHHHHHhh--hcCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEE
Q 006566 159 NYNIPLVADIHF-APSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVR 235 (640)
Q Consensus 159 g~~iPLVADIHF-~~~~Al~Aa~--~v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIR 235 (640)
.+++||.+|=.+ ++.-+..+++ +++-|.|-|+..|. +.++.+.|+.+|+++=
T Consensus 215 ~~~~Pia~DEs~~~~~d~~~~~~~~a~d~v~ik~~k~GG-------------------------i~~~~~~a~~~gi~~~ 269 (320)
T PRK02714 215 DYQTPIALDESVANLAQLQQCYQQGWRGIFVIKPAIAGS-------------------------PSRLRQFCQQHPLDAV 269 (320)
T ss_pred hCCCCEEECCccCCHHHHHHHHHcCCCCEEEEcchhcCC-------------------------HHHHHHHHHHhCCCEE
Confidence 478999999775 4554445545 47779999999987 3345678999999998
Q ss_pred Eee
Q 006566 236 IGT 238 (640)
Q Consensus 236 IGv 238 (640)
+|.
T Consensus 270 ~~~ 272 (320)
T PRK02714 270 FSS 272 (320)
T ss_pred EEe
Confidence 884
No 453
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=39.26 E-value=60 Score=34.37 Aligned_cols=82 Identities=23% Similarity=0.289 Sum_probs=55.2
Q ss_pred cccccccccCCCcee-EEEceeecCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHH
Q 006566 76 YCESIHKTVRRKTRT-VMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNS 154 (640)
Q Consensus 76 Yc~s~~~~~Rr~Tr~-V~VG~v~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~ 154 (640)
|..++-...|+.... ..||-...=.+||= ..|.+.-++..++=.++||+ .+-+|=.=+++.+.+..++
T Consensus 114 ~a~~Li~~i~~~~~~~f~igva~~Pe~Hp~---------~~~~~~d~~~L~~Ki~aGA~--f~iTQ~~Fd~~~~~~f~~~ 182 (281)
T TIGR00677 114 YAVDLVKYIRSKYGDYFCIGVAGYPEGHPE---------AESVELDLKYLKEKVDAGAD--FIITQLFYDVDNFLKFVND 182 (281)
T ss_pred CHHHHHHHHHHhCCCceEEEEEECCCCCCC---------CCCHHHHHHHHHHHHHcCCC--EeeccceecHHHHHHHHHH
Confidence 444444444443222 55555444334442 23445556666666789999 7888888899999999999
Q ss_pred hhcCCCCcceeecc
Q 006566 155 LVQKNYNIPLVADI 168 (640)
Q Consensus 155 L~~~g~~iPLVADI 168 (640)
+++.|+++|+++=|
T Consensus 183 ~~~~gi~~PIi~GI 196 (281)
T TIGR00677 183 CRAIGIDCPIVPGI 196 (281)
T ss_pred HHHcCCCCCEEeec
Confidence 99999999997765
No 454
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon. PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.
Probab=38.71 E-value=4.2e+02 Score=27.15 Aligned_cols=131 Identities=16% Similarity=0.159 Sum_probs=72.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecCC--HHHHHHHHHHHHHhhcCCCCcceeec--cCCCH---H---------HHH
Q 006566 113 DTKDVAGTVEEVMRIADQGADLVRITVQG--KREADACFEIKNSLVQKNYNIPLVAD--IHFAP---S---------VAL 176 (640)
Q Consensus 113 ~T~Dv~atv~Qi~rl~~aGceiVRvtvp~--~~~A~~l~~I~~~L~~~g~~iPLVAD--IHF~~---~---------~Al 176 (640)
.-.|++.++..+.++.++|..-+-....+ .++.+.+.++.++ +.+.+++= +|-.+ . +..
T Consensus 27 ~~~~~~~~~~~~~~~~~~Gvttiv~~~~~~~~~~~~~~~~~~~~-----~g~~v~~~~G~hp~~~~~~~~~~~~~~~l~~ 101 (293)
T cd00530 27 DLADVEAAKEELKRFRAHGGRTIVDATPPGIGRDVEKLAEVARA-----TGVNIVAATGFYKDAFYPEWVRLRSVEELTD 101 (293)
T ss_pred chhhHHHHHHHHHHHHHcCCCeEEEcCCcccCcCHHHHHHHHHH-----hCCcEEEecccCCCccChHHHhhCCHHHHHH
Confidence 34588999999999999999877655553 3566777777664 33333322 33221 1 111
Q ss_pred HHhhh----cCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhC
Q 006566 177 RVAEC----FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYG 252 (640)
Q Consensus 177 ~Aa~~----v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryG 252 (640)
...+. ++.-.|.+|-||.-- ++|.. .+ .=++.|+..++.|+++|.|+=|=+..+
T Consensus 102 ~~~~~l~~~~~~~~i~~~~IGEig-----ld~~~----~~--~q~~~f~~~~~lA~~~~~Pv~iH~~~~----------- 159 (293)
T cd00530 102 MLIREIEEGIEGTGIKAGIIKEAG-----GSPAI----TP--LEEKVLRAAARAQKETGVPISTHTQAG----------- 159 (293)
T ss_pred HHHHHHHhccccCCcCceEEEEee-----cCCCC----CH--HHHHHHHHHHHHHHHHCCeEEEcCCCC-----------
Confidence 11111 122223334443211 12210 01 113668899999999999986655333
Q ss_pred CChHHHHHHHHHHHHHHHHCCCCc
Q 006566 253 DSPRGMVESAFEFARICRKLDFHN 276 (640)
Q Consensus 253 dtp~gMVeSAle~~~i~e~~~F~d 276 (640)
+ .+..+.++++++.|+..
T Consensus 160 --~----~~~~~~l~~l~~~g~~~ 177 (293)
T cd00530 160 --L----TMGLEQLRILEEEGVDP 177 (293)
T ss_pred --c----cccHHHHHHHHHcCCCh
Confidence 0 13345667787888754
No 455
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=38.67 E-value=4.1e+02 Score=26.46 Aligned_cols=136 Identities=17% Similarity=0.165 Sum_probs=76.8
Q ss_pred HHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCCCcceeeccCCCH-------HH--HHHHhhh-cCcee--eCCCC
Q 006566 124 VMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAP-------SV--ALRVAEC-FDKIR--VNPGN 191 (640)
Q Consensus 124 i~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~-------~~--Al~Aa~~-v~KVR--INPGN 191 (640)
+.+..+.|++-|=++ -..++..++.|.. .++-+-+++.|.. ++ +.+|++. ++-|= +|.|-
T Consensus 23 ~~~a~~~~~~av~v~------p~~v~~~~~~l~~--~~~~v~~~~~fp~g~~~~~~k~~eve~A~~~GAdevdvv~~~g~ 94 (203)
T cd00959 23 CDEAKEYGFAAVCVN------PCFVPLAREALKG--SGVKVCTVIGFPLGATTTEVKVAEAREAIADGADEIDMVINIGA 94 (203)
T ss_pred HHHHHHcCCCEEEEc------HHHHHHHHHHcCC--CCcEEEEEEecCCCCCcHHHHHHHHHHHHHcCCCEEEEeecHHH
Confidence 334445688877655 2333344555543 3455555565542 22 3356665 66655 67775
Q ss_pred CCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCCChHHHHHHHHHHHHHHHH
Q 006566 192 FADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRK 271 (640)
Q Consensus 192 ~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGdtp~gMVeSAle~~~i~e~ 271 (640)
+-++.. +.+.+.+..+++.|. |.++++=+..|-|++..+. .-.|+|.+
T Consensus 95 ~~~~~~----------------~~~~~ei~~v~~~~~--g~~lkvI~e~~~l~~~~i~--------------~a~ria~e 142 (203)
T cd00959 95 LKSGDY----------------EAVYEEIAAVVEACG--GAPLKVILETGLLTDEEII--------------KACEIAIE 142 (203)
T ss_pred HhCCCH----------------HHHHHHHHHHHHhcC--CCeEEEEEecCCCCHHHHH--------------HHHHHHHH
Confidence 544221 234445777888886 8999997777777433222 23678999
Q ss_pred CCCCcEEEEEEeCChhhHHHHHHHHHHH
Q 006566 272 LDFHNFLFSMKASNPVVMVQAYRLLVAE 299 (640)
Q Consensus 272 ~~F~diviSmKsSn~~~mV~AyRlL~~~ 299 (640)
.|=+=|+.|-=-.....+++..+.|.+.
T Consensus 143 ~GaD~IKTsTG~~~~~at~~~v~~~~~~ 170 (203)
T cd00959 143 AGADFIKTSTGFGPGGATVEDVKLMKEA 170 (203)
T ss_pred hCCCEEEcCCCCCCCCCCHHHHHHHHHH
Confidence 8888665551001123456666666666
No 456
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=38.32 E-value=1.5e+02 Score=30.62 Aligned_cols=81 Identities=16% Similarity=0.201 Sum_probs=51.9
Q ss_pred ceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEe-cCCHHHHHHHHHHHHHhhcCCC--CcceeeccCCCHHHHH---
Q 006566 103 PIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRIT-VQGKREADACFEIKNSLVQKNY--NIPLVADIHFAPSVAL--- 176 (640)
Q Consensus 103 PI~VQSMt~t~T~Dv~atv~Qi~rl~~aGceiVRvt-vp~~~~A~~l~~I~~~L~~~g~--~iPLVADIHF~~~~Al--- 176 (640)
.|.++.|..+. .|.+.-++-++++.++|++.|++. +-+.-.-+.+.++.+.|++.-- ++||-.-.|=|+-+|+
T Consensus 129 ~v~~~~~~~~~-~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~l~~H~Hn~~GlA~An~ 207 (268)
T cd07940 129 DVEFSAEDATR-TDLDFLIEVVEAAIEAGATTINIPDTVGYLTPEEFGELIKKLKENVPNIKVPISVHCHNDLGLAVANS 207 (268)
T ss_pred eEEEeeecCCC-CCHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHhCCCCceeEEEEecCCcchHHHHH
Confidence 45566665554 678888999999999999998887 2233333333334444443222 2888777787888775
Q ss_pred -HHhhh-cCc
Q 006566 177 -RVAEC-FDK 184 (640)
Q Consensus 177 -~Aa~~-v~K 184 (640)
+|+++ ++-
T Consensus 208 laAi~aG~~~ 217 (268)
T cd07940 208 LAAVEAGARQ 217 (268)
T ss_pred HHHHHhCCCE
Confidence 56665 443
No 457
>COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only]
Probab=38.21 E-value=1.5e+02 Score=32.05 Aligned_cols=87 Identities=11% Similarity=0.204 Sum_probs=62.7
Q ss_pred ecCCCCceEEEeccCCCC-C-CHHHHHHHHHHHHHcCCCEEEEecCCH---HHHHHHHHHHHHhhcCCCCcceeeccCCC
Q 006566 97 AIGSEHPIRVQTMTTNDT-K-DVAGTVEEVMRIADQGADLVRITVQGK---READACFEIKNSLVQKNYNIPLVADIHFA 171 (640)
Q Consensus 97 ~IGG~~PI~VQSMt~t~T-~-Dv~atv~Qi~rl~~aGceiVRvtvp~~---~~A~~l~~I~~~L~~~g~~iPLVADIHF~ 171 (640)
.+||....+|+.=++.-- . ..+...+....+.+.|..-+.+-+-.. ++.+-++.||+. -|.++.|..|-|=.
T Consensus 122 LLGg~~r~~v~~y~~~~~~~~~~e~~~~~~~~~~~~G~~~~Klk~g~~~~~~d~~~v~avRe~---~g~~~~l~iDan~~ 198 (372)
T COG4948 122 LLGGKVRDEVRAYASGGGGEDPEEMAAEAARALVELGFKALKLKVGVGDGDEDLERVRALREA---VGDDVRLMVDANGG 198 (372)
T ss_pred HcCCceeeeEEEEEecCCCCCCHHHHHHHHHHHHhcCCceEEecCCCCchHHHHHHHHHHHHH---hCCCceEEEeCCCC
Confidence 467777677777766664 2 445555555666668999999987666 889999999985 57789999999955
Q ss_pred HHH--HHHHhhhcCcee
Q 006566 172 PSV--ALRVAECFDKIR 186 (640)
Q Consensus 172 ~~~--Al~Aa~~v~KVR 186 (640)
+.+ |...++.+++-.
T Consensus 199 ~~~~~A~~~~~~l~~~~ 215 (372)
T COG4948 199 WTLEEAIRLARALEEYG 215 (372)
T ss_pred cCHHHHHHHHHHhcccC
Confidence 444 666666665544
No 458
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=38.16 E-value=1.1e+02 Score=33.10 Aligned_cols=77 Identities=12% Similarity=0.064 Sum_probs=57.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCH------HHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhh--cCcee
Q 006566 115 KDVAGTVEEVMRIADQGADLVRITVQGK------READACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC--FDKIR 186 (640)
Q Consensus 115 ~Dv~atv~Qi~rl~~aGceiVRvtvp~~------~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~--v~KVR 186 (640)
.+.+.+++=++.|.++|+|+|=|+.-+. --.+..+.||+. .++|+++=--++|..|.++++. +|-|=
T Consensus 238 ~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~ik~~-----~~ipvi~~G~i~~~~a~~~l~~g~~D~V~ 312 (338)
T cd02933 238 DPEATFSYLAKELNKRGLAYLHLVEPRVAGNPEDQPPDFLDFLRKA-----FKGPLIAAGGYDAESAEAALADGKADLVA 312 (338)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEecCCCCCcccccchHHHHHHHHH-----cCCCEEEECCCCHHHHHHHHHcCCCCEEE
Confidence 4567888888999999999999975433 234456677775 5688888766669999999875 78777
Q ss_pred eCCCCCCchh
Q 006566 187 VNPGNFADRR 196 (640)
Q Consensus 187 INPGN~~d~~ 196 (640)
+-=+-++|++
T Consensus 313 ~gR~~ladP~ 322 (338)
T cd02933 313 FGRPFIANPD 322 (338)
T ss_pred eCHhhhhCcC
Confidence 7666666654
No 459
>PF00215 OMPdecase: Orotidine 5'-phosphate decarboxylase / HUMPS family; InterPro: IPR001754 Orotidine 5'-phosphate decarboxylase (OMPdecase) [, ] catalyses the last step in the de novo biosynthesis of pyrimidines, the decarboxylation of OMP into UMP. In higher eukaryotes OMPdecase is part, with orotate phosphoribosyltransferase, of a bifunctional enzyme, while the prokaryotic and fungal OMPdecases are monofunctional protein. Some parts of the sequence of OMPdecase are well conserved across species. The best conserved region is located in the N-terminal half of OMPdecases and is centred around a lysine residue which is essential for the catalytic function of the enzyme. This entry also includes enzymes such as 3-hexulose-6-phosphate synthase 4.1.2.43 from EC and 3-keto-L-gulonate-6-phosphate decarboxylase 4.1.1.85 from EC.; GO: 0004590 orotidine-5'-phosphate decarboxylase activity, 0006207 'de novo' pyrimidine base biosynthetic process; PDB: 2YYT_D 2YYU_B 3RU6_D 2CZE_B 2CZ5_B 2CZF_A 2CZD_A 3R89_A 2ZCG_A 2ZA1_A ....
Probab=38.05 E-value=4.4e+02 Score=26.58 Aligned_cols=138 Identities=19% Similarity=0.220 Sum_probs=83.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecCCHHH--HHHHHHHHHHhhcCCCCcceeeccCCC--HHHHHHHh-------hh
Q 006566 113 DTKDVAGTVEEVMRIADQGADLVRITVQGKRE--ADACFEIKNSLVQKNYNIPLVADIHFA--PSVALRVA-------EC 181 (640)
Q Consensus 113 ~T~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~--A~~l~~I~~~L~~~g~~iPLVADIHF~--~~~Al~Aa-------~~ 181 (640)
|+.|.+.+++=+.++.+ ..+++-+-+|=... .+.+.++.+.|++++ .|+++|.=+. |+....++ +.
T Consensus 8 D~~~~~~a~~i~~~~~~-~v~~iKvG~~l~~~~G~~~l~~~i~~l~~~~--~~I~~D~K~~Dig~t~~~~~~~~~~~~~~ 84 (226)
T PF00215_consen 8 DPTDLEEALRIADELGD-YVDIIKVGTPLFLAYGLEALPEIIEELKERG--KPIFLDLKLGDIGNTVARYAEAGFAAFEL 84 (226)
T ss_dssp -SSSHHHHHHHHHHHGG-GSSEEEEEHHHHHHHCHHHHHHHHHHHHHTT--SEEEEEEEE-SSHHHHHHHHHSCHHHHTT
T ss_pred CCCCHHHHHHHHHHhcC-cceEEEEChHHHhcCChhhHHHHHHHHHHhc--CCEeeeeeecccchHHHHHHHHhhhhhcC
Confidence 56677777766666666 88999888775544 237788888888888 9999997554 44433333 44
Q ss_pred -cCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEe-eCCCCCcHhHHHHhCCChHHHH
Q 006566 182 -FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIG-TNHGSLSDRIMSYYGDSPRGMV 259 (640)
Q Consensus 182 -v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIG-vNhGSLs~ril~ryGdtp~gMV 259 (640)
+|-+=++|=. . .. .++++++.++++|...-++ +--.|.+..-+..++ .+..
T Consensus 85 gaD~vTv~~~~--G-~~---------------------tl~~~~~~a~~~~~~~~~~v~~~s~~~~~~~~~~~---~~~~ 137 (226)
T PF00215_consen 85 GADAVTVHPFA--G-DD---------------------TLEAAVKAAKKHGRKGVFVVDLLSNPDSEDLQDLG---LGVD 137 (226)
T ss_dssp TESEEEEEGTT--H-HH---------------------HHHHHHHHHHHTTESEEEEEESTTSTTHHHHHHHH---CTHH
T ss_pred CCcEEEEeccC--C-HH---------------------HHHHHHHHHhccCCcceEEEEecCCCCHHHHHhhh---cccH
Confidence 8889998843 3 22 3899999999998222223 333444333333333 1222
Q ss_pred HHHHHHH-HHHHHCCCCcEEEE
Q 006566 260 ESAFEFA-RICRKLDFHNFLFS 280 (640)
Q Consensus 260 eSAle~~-~i~e~~~F~diviS 280 (640)
+.+.+.+ +.-.+.++.-+|.|
T Consensus 138 ~~~v~~~~~~~~~~g~~G~v~~ 159 (226)
T PF00215_consen 138 QEIVHRAADLAAKAGVDGIVCS 159 (226)
T ss_dssp HHHHHHHHHHHHHTTEEEEEET
T ss_pred HHHHHHHHHhhccccccCcccc
Confidence 3333222 23335666777776
No 460
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=37.99 E-value=75 Score=35.23 Aligned_cols=156 Identities=12% Similarity=0.096 Sum_probs=0.0
Q ss_pred CCCcccccccccCCCCCCCccCcccccccccccc-CCCceeEEEceeec-----CCCCceEE---EeccCCCCC------
Q 006566 51 SNSSSDIAELQPASEGSPLLVPRQKYCESIHKTV-RRKTRTVMVGNVAI-----GSEHPIRV---QTMTTNDTK------ 115 (640)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~Yc~s~~~~~-Rr~Tr~V~VG~v~I-----GG~~PI~V---QSMt~t~T~------ 115 (640)
+..++.+....+....+.+.+|....-+-+|.|. ++.-+.++.-.+.- |.+.=+.+ |.++..++.
T Consensus 9 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rL~Rl~~~g~l~~tGr~vilpvDHG~ehGp~~~f~~n~ 88 (348)
T PRK09250 9 GKDADSLLSHRCKIPKDQLHLPGPDFVDRVMIYSDRNPGVLRNLQRLLNHGRLAGTGYLSILPVDQGFEHSAGASFAPNP 88 (348)
T ss_pred hHHHHHHHhccccCchhhccCCCcchhhhccCcccCCHhHHHHHHHHhcccccCCCCCEEEEEcccccccCCccccccCC
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCCCcceeeccCCCHHH-------------HHHHhhh-
Q 006566 116 DVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSV-------------ALRVAEC- 181 (640)
Q Consensus 116 Dv~atv~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~-------------Al~Aa~~- 181 (640)
+.+.--.-++.+.++||+-+=.+ ++-++.-.+.-.-++|||--+-=...+ ..+|++.
T Consensus 89 gl~dp~~~i~~a~~~g~dAv~~~---------~G~l~~~~~~~~~~iplIlkln~~t~l~~~~~~~~~l~~sVedAlrLG 159 (348)
T PRK09250 89 LYFDPENIVKLAIEAGCNAVAST---------LGVLEAVARKYAHKIPFILKLNHNELLSYPNTYDQALTASVEDALRLG 159 (348)
T ss_pred cccCHHHHHHHHHhcCCCEEEeC---------HHHHHhccccccCCCCEEEEeCCCCCCCCCCCCcccceecHHHHHHCC
Q ss_pred cCcee--eCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeE
Q 006566 182 FDKIR--VNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAV 234 (640)
Q Consensus 182 v~KVR--INPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aI 234 (640)
++.|= |||| +.. |-+-|++ +.++++.|+++|.|+
T Consensus 160 AdAV~~tvy~G---s~~---------------E~~ml~~-l~~i~~ea~~~GlPl 195 (348)
T PRK09250 160 AVAVGATIYFG---SEE---------------SRRQIEE-ISEAFEEAHELGLAT 195 (348)
T ss_pred CCEEEEEEecC---CHH---------------HHHHHHH-HHHHHHHHHHhCCCE
No 461
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=37.95 E-value=59 Score=33.91 Aligned_cols=45 Identities=22% Similarity=0.333 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCCCcceee
Q 006566 114 TKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVA 166 (640)
Q Consensus 114 T~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~iPLVA 166 (640)
..+.+..+++.+++++|||+.|=+..++.++++ +|.+. .++|+++
T Consensus 152 ~~~~~~ai~Ra~ay~~AGAd~i~~e~~~~e~~~---~i~~~-----~~~P~~~ 196 (240)
T cd06556 152 DEAGEQLIADALAYAPAGADLIVMECVPVELAK---QITEA-----LAIPLAG 196 (240)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEcCCCHHHHH---HHHHh-----CCCCEEE
Confidence 346889999999999999999999877555544 56653 7799885
No 462
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=37.89 E-value=1.5e+02 Score=32.75 Aligned_cols=77 Identities=16% Similarity=0.140 Sum_probs=53.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCH--H-----HHHHHHHHHHHhhcCCCCcceeec--cC----------------
Q 006566 115 KDVAGTVEEVMRIADQGADLVRITVQGK--R-----EADACFEIKNSLVQKNYNIPLVAD--IH---------------- 169 (640)
Q Consensus 115 ~Dv~atv~Qi~rl~~aGceiVRvtvp~~--~-----~A~~l~~I~~~L~~~g~~iPLVAD--IH---------------- 169 (640)
.+.+.+++-++.|.++|+|+|=+++.+. . .....+.||+. .++|+++= |+
T Consensus 232 ~~~~e~~~~~~~l~~~gvd~i~vs~g~~~~~~~~~~~~~~~~~~k~~-----~~~pv~~~G~i~~~~~~~~~~~~~~~~~ 306 (361)
T cd04747 232 DTPDELEALLAPLVDAGVDIFHCSTRRFWEPEFEGSELNLAGWTKKL-----TGLPTITVGSVGLDGDFIGAFAGDEGAS 306 (361)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCCCccCCCcCccchhHHHHHHHH-----cCCCEEEECCcccccccccccccccccc
Confidence 4667888888999999999999887531 0 12233456663 55777664 43
Q ss_pred -CCHHHHHHHhhh--cCceeeCCCCCCchh
Q 006566 170 -FAPSVALRVAEC--FDKIRVNPGNFADRR 196 (640)
Q Consensus 170 -F~~~~Al~Aa~~--v~KVRINPGN~~d~~ 196 (640)
.+|..|.++++. +|-|-+-=+=++|++
T Consensus 307 ~~~~~~a~~~l~~g~~D~V~~gR~~iadP~ 336 (361)
T cd04747 307 PASLDRLLERLERGEFDLVAVGRALLSDPA 336 (361)
T ss_pred cCCHHHHHHHHHCCCCCeehhhHHHHhCcH
Confidence 488999999985 888876655666644
No 463
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=37.79 E-value=4.3e+02 Score=27.14 Aligned_cols=68 Identities=16% Similarity=0.124 Sum_probs=43.6
Q ss_pred HHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhh----h-cCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhH
Q 006566 146 DACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAE----C-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVF 220 (640)
Q Consensus 146 ~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~----~-v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f 220 (640)
+....|.+.+++.||++ ++.+-..++..-..+++ . +|.|=|+|-+. . ..
T Consensus 15 ~~~~~i~~~a~~~g~~v-~~~~~~~~~~~q~~~i~~l~~~~vDgIIi~~~~~---~----------------------~~ 68 (302)
T TIGR02634 15 KDRDIFVAAAESLGAKV-FVQSANGNEAKQISQIENLIARGVDVLVIIPQNG---Q----------------------VL 68 (302)
T ss_pred HHHHHHHHHHHhcCCEE-EEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCh---h----------------------HH
Confidence 34456677777778877 56676777654443333 2 77888887432 1 14
Q ss_pred HHHHHHHHHcCCeEEEeeCC
Q 006566 221 SPLVEKCKKYGRAVRIGTNH 240 (640)
Q Consensus 221 ~~lV~~~Ke~g~aIRIGvNh 240 (640)
.+.++.|++.|+|+ |-+|.
T Consensus 69 ~~~l~~~~~~~iPv-V~~d~ 87 (302)
T TIGR02634 69 SNAVQEAKDEGIKV-VAYDR 87 (302)
T ss_pred HHHHHHHHHCCCeE-EEecC
Confidence 56788999999998 44443
No 464
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=37.64 E-value=5.2e+02 Score=27.36 Aligned_cols=106 Identities=19% Similarity=0.302 Sum_probs=69.7
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCH---------HHH--H---------HHHHHHHHhhcCCCCcceeeccCCCHHHH
Q 006566 116 DVAGTVEEVMRIADQGADLVRITVQGK---------REA--D---------ACFEIKNSLVQKNYNIPLVADIHFAPSVA 175 (640)
Q Consensus 116 Dv~atv~Qi~rl~~aGceiVRvtvp~~---------~~A--~---------~l~~I~~~L~~~g~~iPLVADIHF~~~~A 175 (640)
|.+.|.+-+..|.++|||++=+-+|-- ++| + .+-++.+++|+ ..++|+|-=.-+||=.+
T Consensus 27 ~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~-~~~~p~vlm~Y~N~i~~ 105 (263)
T CHL00200 27 DIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNG-EIKAPIVIFTYYNPVLH 105 (263)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhc-CCCCCEEEEecccHHHH
Confidence 779999999999999999999998742 111 1 12334445664 48899886666776333
Q ss_pred -------HHHhhh-cCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhH
Q 006566 176 -------LRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRI 247 (640)
Q Consensus 176 -------l~Aa~~-v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ri 247 (640)
..|+++ ++.|=|- | .-+ |...++.+.||++|+..=.=++-.+-.+||
T Consensus 106 ~G~e~F~~~~~~aGvdgviip-----D------------LP~--------ee~~~~~~~~~~~gi~~I~lv~PtT~~eri 160 (263)
T CHL00200 106 YGINKFIKKISQAGVKGLIIP-----D------------LPY--------EESDYLISVCNLYNIELILLIAPTSSKSRI 160 (263)
T ss_pred hCHHHHHHHHHHcCCeEEEec-----C------------CCH--------HHHHHHHHHHHHcCCCEEEEECCCCCHHHH
Confidence 355555 5555331 1 111 125678999999999886677666655553
No 465
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=37.62 E-value=1.1e+02 Score=31.42 Aligned_cols=65 Identities=17% Similarity=0.312 Sum_probs=50.0
Q ss_pred HHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhh-cCceeeCCCCCCc
Q 006566 120 TVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGNFAD 194 (640)
Q Consensus 120 tv~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~-v~KVRINPGN~~d 194 (640)
+.+|.++..++|++.+ -.|+... +-++.-++ +++|.+. -=|+|.=+..|.++ ++-|.+.|.+...
T Consensus 69 ~~~~a~~a~~aGA~Fi--vsP~~~~-~v~~~~~~------~~i~~iP-G~~TptEi~~A~~~Ga~~vKlFPA~~~G 134 (204)
T TIGR01182 69 NPEQLRQAVDAGAQFI--VSPGLTP-ELAKHAQD------HGIPIIP-GVATPSEIMLALELGITALKLFPAEVSG 134 (204)
T ss_pred CHHHHHHHHHcCCCEE--ECCCCCH-HHHHHHHH------cCCcEEC-CCCCHHHHHHHHHCCCCEEEECCchhcC
Confidence 5789999999999998 5566532 33333333 6788888 45899999999999 9999999988443
No 466
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=37.60 E-value=1.1e+02 Score=33.15 Aligned_cols=149 Identities=21% Similarity=0.220 Sum_probs=91.0
Q ss_pred CHHHHHHHHHHHHHcCCC-EEEEecCCH-HHHHHHHHHHHHhhcCCCCcceeecc--CC---CHHH---------HH---
Q 006566 116 DVAGTVEEVMRIADQGAD-LVRITVQGK-READACFEIKNSLVQKNYNIPLVADI--HF---APSV---------AL--- 176 (640)
Q Consensus 116 Dv~atv~Qi~rl~~aGce-iVRvtvp~~-~~A~~l~~I~~~L~~~g~~iPLVADI--HF---~~~~---------Al--- 176 (640)
|+++++++++++.++|+. ||=.|.+++ ++++.|++|-++ +.+.+||=- |+ .|.- |.
T Consensus 36 ~~~~~~~El~~~k~~Gg~tiVd~T~~g~GRd~~~l~~is~~-----tGv~II~~TG~y~~~~~p~~~~~~s~e~la~~~i 110 (308)
T PF02126_consen 36 DVEAAVAELKEFKAAGGRTIVDATPIGLGRDVEALREISRR-----TGVNIIASTGFYKEPFYPEWVREASVEELADLFI 110 (308)
T ss_dssp HHHHHHHHHHHHHHTTEEEEEE--SGGGTB-HHHHHHHHHH-----HT-EEEEEEEE-SGGCSCHHHHTSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCEEEecCCcccCcCHHHHHHHHHH-----hCCeEEEeCCCCccccCChhhhcCCHHHHHHHHH
Confidence 999999999999999985 777887777 899999999996 888888862 22 2221 11
Q ss_pred HHhhh-cCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCCCh
Q 006566 177 RVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSP 255 (640)
Q Consensus 177 ~Aa~~-v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGdtp 255 (640)
.-++. ++.--|-||-|+-.-- +. ..|+.| ++.|+....+.++-|.||=+=+..|.
T Consensus 111 ~Ei~~GidgT~ikaG~Ik~~~~-~~--~it~~E--------~k~lrAaa~A~~~TG~pI~~H~~~g~------------- 166 (308)
T PF02126_consen 111 REIEEGIDGTGIKAGIIKEIGS-SN--PITPLE--------EKVLRAAARAHKETGAPISTHTGRGT------------- 166 (308)
T ss_dssp HHHHT-STTSSB-ESEEEEEEB-TT--BCEHHH--------HHHHHHHHHHHHHHT-EEEEEESTTG-------------
T ss_pred HHHHhcCCCCccchhheeEeec-cC--CCCHHH--------HHHHHHHHHHHHHhCCeEEEcCCCCC-------------
Confidence 11122 5555567887754221 11 112211 33577888999999999966664433
Q ss_pred HHHHHHHHHHHHHHHHCCC--CcEEEEEEeCChhhHHHHHHHHHHH
Q 006566 256 RGMVESAFEFARICRKLDF--HNFLFSMKASNPVVMVQAYRLLVAE 299 (640)
Q Consensus 256 ~gMVeSAle~~~i~e~~~F--~diviSmKsSn~~~mV~AyRlL~~~ 299 (640)
..++|.+++++++|- ++++|+ -.|...=...++.|+++
T Consensus 167 ----~~~~e~~~il~e~Gv~~~rvvig--H~D~~~D~~y~~~la~~ 206 (308)
T PF02126_consen 167 ----RMGLEQLDILEEEGVDPSRVVIG--HMDRNPDLDYHRELADR 206 (308)
T ss_dssp ----TCHHHHHHHHHHTT--GGGEEET--SGGGST-HHHHHHHHHT
T ss_pred ----cCHHHHHHHHHHcCCChhHeEEe--CCCCCCCHHHHHHHHhc
Confidence 126789999999998 566665 33322224455555544
No 467
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=37.60 E-value=1.4e+02 Score=31.22 Aligned_cols=129 Identities=20% Similarity=0.256 Sum_probs=82.2
Q ss_pred CCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecC-CHHHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHH
Q 006566 100 SEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQ-GKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRV 178 (640)
Q Consensus 100 G~~PI~VQSMt~t~T~Dv~atv~Qi~rl~~aGceiVRvtvp-~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~A 178 (640)
...|+-|-=|...+ -..+..+++|||+++=+-+- +..-.+.+..||+. |+. |=+=|||.-=+++
T Consensus 60 t~~p~DvHLMV~~p-------~~~i~~fa~agad~It~H~E~~~~~~r~i~~Ik~~----G~k----aGv~lnP~Tp~~~ 124 (220)
T COG0036 60 TDLPLDVHLMVENP-------DRYIEAFAKAGADIITFHAEATEHIHRTIQLIKEL----GVK----AGLVLNPATPLEA 124 (220)
T ss_pred CCCceEEEEecCCH-------HHHHHHHHHhCCCEEEEEeccCcCHHHHHHHHHHc----CCe----EEEEECCCCCHHH
Confidence 36788888887655 56888999999999988776 23445566667663 554 4455787766666
Q ss_pred hhh----cCcee---eCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHh
Q 006566 179 AEC----FDKIR---VNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYY 251 (640)
Q Consensus 179 a~~----v~KVR---INPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ry 251 (640)
++. +|.|= +|||= |..+ |.. ..-+|++.+-+..++.+ .+.|-|-.| ++.
T Consensus 125 i~~~l~~vD~VllMsVnPGf-gGQ~--Fi~-------------~~l~Ki~~lr~~~~~~~-~~~IeVDGG-I~~------ 180 (220)
T COG0036 125 LEPVLDDVDLVLLMSVNPGF-GGQK--FIP-------------EVLEKIRELRAMIDERL-DILIEVDGG-INL------ 180 (220)
T ss_pred HHHHHhhCCEEEEEeECCCC-cccc--cCH-------------HHHHHHHHHHHHhcccC-CeEEEEeCC-cCH------
Confidence 664 66665 79994 4322 442 22334445556666566 999999544 433
Q ss_pred CCChHHHHHHHHHHHHHHHHCCCCcEEE
Q 006566 252 GDSPRGMVESAFEFARICRKLDFHNFLF 279 (640)
Q Consensus 252 Gdtp~gMVeSAle~~~i~e~~~F~divi 279 (640)
|-++.|.+.|=+-+|.
T Consensus 181 ------------~t~~~~~~AGad~~Va 196 (220)
T COG0036 181 ------------ETIKQLAAAGADVFVA 196 (220)
T ss_pred ------------HHHHHHHHcCCCEEEE
Confidence 3556677777654443
No 468
>PF02784 Orn_Arg_deC_N: Pyridoxal-dependent decarboxylase, pyridoxal binding domain; InterPro: IPR022644 These enzymes are collectively known as group IV decarboxylases []. Pyridoxal-dependent decarboxylases acting on ornithine, lysine, arginine and related substrates can be classified into two different families on the basis of sequence similarities [, ]. Members of this family while most probably evolutionary related, do not share extensive regions of sequence similarities. The proteins contain a conserved lysine residue which is known, in mouse ODC [], to be the site of attachment of the pyridoxal-phosphate group. The proteins also contain a stretch of three consecutive glycine residues and has been proposed to be part of a substrate- binding region [].; GO: 0003824 catalytic activity; PDB: 2OO0_A 2ON3_A 1D7K_B 3VAB_A 2J66_A 3C5Q_A 2QGH_A 1TWI_B 1TUF_A 3N2O_A ....
Probab=37.53 E-value=3.1e+02 Score=27.85 Aligned_cols=50 Identities=22% Similarity=0.367 Sum_probs=28.9
Q ss_pred HHHHHHHHHHcCCeEEEee--CCCCCcHhHHHHhCCChHHHHHHHHHHHHHHH-HCCCC
Q 006566 220 FSPLVEKCKKYGRAVRIGT--NHGSLSDRIMSYYGDSPRGMVESAFEFARICR-KLDFH 275 (640)
Q Consensus 220 f~~lV~~~Ke~g~aIRIGv--NhGSLs~ril~ryGdtp~gMVeSAle~~~i~e-~~~F~ 275 (640)
+.++++.+++.++.+ +|+ -.||=... .+.| ...++.++++++-+. ++||.
T Consensus 143 ~~~~l~~~~~~~l~l-~GlH~H~gS~~~~-~~~~----~~~~~~~~~~~~~~~~~~g~~ 195 (251)
T PF02784_consen 143 AEEALERAKELGLRL-VGLHFHVGSQILD-AEAF----RQAIERLLDLAEELKEELGFE 195 (251)
T ss_dssp HHHHHHHHHHTTEEE-EEEEE-HCSSBSS-CHHH----HHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHhhccceEEE-EEeeeeeccCCcc-hHHH----HHHHHHHHHHHhhhccccccc
Confidence 677888999988222 243 22443211 1112 456777777777665 88877
No 469
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=37.48 E-value=90 Score=36.11 Aligned_cols=73 Identities=25% Similarity=0.339 Sum_probs=50.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEe----cCCH-HHHHHHHHHHHHhhcCCC--CcceeeccCCCHHHHH----HHhh
Q 006566 112 NDTKDVAGTVEEVMRIADQGADLVRIT----VQGK-READACFEIKNSLVQKNY--NIPLVADIHFAPSVAL----RVAE 180 (640)
Q Consensus 112 t~T~Dv~atv~Qi~rl~~aGceiVRvt----vp~~-~~A~~l~~I~~~L~~~g~--~iPLVADIHF~~~~Al----~Aa~ 180 (640)
++-.|.+--++.++++.++||+.|+|. .-.+ +..+-++.||+. + ++|+-.-.|-+.-+|. +|++
T Consensus 149 sp~~t~e~~~~~a~~l~~~Gad~I~IkDtaGll~P~~~~~LV~~Lk~~-----~~~~ipI~~H~Hnt~GlA~An~laAie 223 (499)
T PRK12330 149 SPIHTVEGFVEQAKRLLDMGADSICIKDMAALLKPQPAYDIVKGIKEA-----CGEDTRINLHCHSTTGVTLVSLMKAIE 223 (499)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCHHHHHHHHHHHHHh-----CCCCCeEEEEeCCCCCcHHHHHHHHHH
Confidence 455689999999999999999988886 2222 233444555553 5 6898877777766665 6777
Q ss_pred h-cCcee--eCC
Q 006566 181 C-FDKIR--VNP 189 (640)
Q Consensus 181 ~-v~KVR--INP 189 (640)
+ ++-|= |||
T Consensus 224 AGad~vDtai~G 235 (499)
T PRK12330 224 AGVDVVDTAISS 235 (499)
T ss_pred cCCCEEEeeccc
Confidence 7 66554 454
No 470
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=37.45 E-value=1.8e+02 Score=31.89 Aligned_cols=113 Identities=17% Similarity=0.266 Sum_probs=64.5
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEe----cCCHHH-------------HHHHHHHHHHhhcCC----CCcceeeccCCCHH
Q 006566 115 KDVAGTVEEVMRIADQGADLVRIT----VQGKRE-------------ADACFEIKNSLVQKN----YNIPLVADIHFAPS 173 (640)
Q Consensus 115 ~Dv~atv~Qi~rl~~aGceiVRvt----vp~~~~-------------A~~l~~I~~~L~~~g----~~iPLVADIHF~~~ 173 (640)
-+|.+.+..+.++.+.|-. +.++ +++.+. .+-+..+++-..+.+ +..|||.++--++.
T Consensus 200 vsT~G~~~~i~~l~d~~l~-~~LaiSL~a~~~e~r~~l~pi~~~~~l~~Il~~l~~~~~~~~~~v~iey~lI~gvNDs~e 278 (356)
T PRK14455 200 VSTSGIAPKIYDFADEGLQ-INLAISLHAPNNELRSSLMPINRAYPLEKLMEAIEYYIEKTNRRVTFEYILLGGVNDQVE 278 (356)
T ss_pred EEecCchHhHHHHHhcccC-eeEEeccCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHH
Confidence 4556666777788877755 4433 333322 223333433222222 23699999888777
Q ss_pred HHHHHhhhcC----ceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCC
Q 006566 174 VALRVAECFD----KIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGS 242 (640)
Q Consensus 174 ~Al~Aa~~v~----KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGS 242 (640)
-|..-++++. +|++=|-|=.+..+ |+.- + .+++.++.+.++++|+...|.-..|.
T Consensus 279 d~~~La~ll~~l~~~VnLIPynp~~~~k-y~~p---s----------~e~l~~f~~~L~~~gi~v~ir~~~g~ 337 (356)
T PRK14455 279 HAEELADLLKGIKCHVNLIPVNPVPERD-YVRT---P----------KEDIFAFEDTLKKNGVNCTIRREHGT 337 (356)
T ss_pred HHHHHHHHHhcCCCcEEEEecCcCCCCC-CcCC---C----------HHHHHHHHHHHHHCCCcEEEeCCCCc
Confidence 6666666533 34444776544332 4331 1 23456677888999999888765554
No 471
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=37.44 E-value=1.1e+02 Score=34.81 Aligned_cols=52 Identities=19% Similarity=0.338 Sum_probs=45.4
Q ss_pred HHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCC-ChHHHHHHHHHHHHHHHH
Q 006566 220 FSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFARICRK 271 (640)
Q Consensus 220 f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGd-tp~gMVeSAle~~~i~e~ 271 (640)
...+++.|+++|+-.=|-.+|=.|+.-+..+||. .-..+|+--.+|+++|-+
T Consensus 112 Y~~lid~l~~~GI~P~vTL~H~dlP~~L~~~yGGW~n~~~~~~F~~Ya~~~f~ 164 (477)
T PRK15014 112 YDDMFDELLKYNIEPVITLSHFEMPLHLVQQYGSWTNRKVVDFFVRFAEVVFE 164 (477)
T ss_pred HHHHHHHHHHcCCEEEEEeeCCCCCHHHHHhcCCCCChHHHHHHHHHHHHHHH
Confidence 4568999999999999999999999999999995 445899999999988855
No 472
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters.
Probab=37.40 E-value=2.5e+02 Score=31.40 Aligned_cols=122 Identities=15% Similarity=0.112 Sum_probs=69.6
Q ss_pred hHHHHHHHHHHcCCeEE-EeeCCCCCcHhHHHHhCC----ChH---HHHHHHHHHHHHHHHCCCCcEEEE----EEeCCh
Q 006566 219 VFSPLVEKCKKYGRAVR-IGTNHGSLSDRIMSYYGD----SPR---GMVESAFEFARICRKLDFHNFLFS----MKASNP 286 (640)
Q Consensus 219 ~f~~lV~~~Ke~g~aIR-IGvNhGSLs~ril~ryGd----tp~---gMVeSAle~~~i~e~~~F~diviS----mKsSn~ 286 (640)
.+.++.+.+|++|+.+- |++| -.++.- .+||. .|+ -=++-+.+.+++++++|=..|.+= .|.+-.
T Consensus 70 d~~~~~~~l~~~GL~v~~i~p~--~f~~~~-~~~GSLt~pD~~vR~~AIe~~k~~idiA~eLGa~~I~iW~~DG~~~~g~ 146 (378)
T TIGR02635 70 DYEELARYAEELGLKIGAINPN--LFQDDD-YKFGSLTHPDKRIRRKAIDHLLECVDIAKKTGSKDISLWLADGTNYPGQ 146 (378)
T ss_pred CHHHHHHHHHHcCCceeeeeCC--ccCCcc-cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEecCCcCcCCcc
Confidence 47888899999999886 5555 332221 14441 222 445666777888999998854333 333332
Q ss_pred hhHHHHHHHHHHHHHHcCCCcceEEEe---ecCCCCCcce----eehHHHHHHHhhhcCCcEEEeec
Q 006566 287 VVMVQAYRLLVAEMYVHGWDYPLHLGV---TEAGEGEDGR----MKSAIGIGTLLQDGLGDTIRVSL 346 (640)
Q Consensus 287 ~~mV~AyRlL~~~m~~~g~dyPLHLGV---TEAG~gedGr----IKSAiGIG~LL~DGIGDTIRVSL 346 (640)
...-+++++|.+-|.+-. +|.-+ |+ -|.-.-+... + ..+|.+.+|.+-+|+.+.|-|
T Consensus 147 ~~~~~a~~rl~esL~eI~-~~~~~-~v~~~iE~Kp~Ep~~y~t~~-~~~~~~l~l~~~lg~~~~v~l 210 (378)
T TIGR02635 147 DDFRSRKDRLEESLAEVY-EHLGA-DMRLLIEYKFFEPAFYHTDI-PDWGTAYALSEKLGERALVLV 210 (378)
T ss_pred cCHHHHHHHHHHHHHHHH-HhCcC-CCEEEEecCCCCCceeeecC-CcHHHHHHHHHhhCCCceEEe
Confidence 233445667776665444 32211 32 3331112211 2 566888888888888876655
No 473
>PRK09875 putative hydrolase; Provisional
Probab=37.34 E-value=5.5e+02 Score=27.58 Aligned_cols=193 Identities=16% Similarity=0.173 Sum_probs=114.5
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCC-EEEEecCCH-HHHHHHHHHHHHhhcCCCCcceeeccCCC-----H---------HH
Q 006566 111 TNDTKDVAGTVEEVMRIADQGAD-LVRITVQGK-READACFEIKNSLVQKNYNIPLVADIHFA-----P---------SV 174 (640)
Q Consensus 111 ~t~T~Dv~atv~Qi~rl~~aGce-iVRvtvp~~-~~A~~l~~I~~~L~~~g~~iPLVADIHF~-----~---------~~ 174 (640)
+..-.|+++++++++++.++|.. ||-.|..++ ++++.|++|-++ +.+.+||=-=|. | .+
T Consensus 27 ~~~l~~~~~~~~el~~~~~~Gg~tiVd~T~~g~GRd~~~l~~is~~-----tgv~Iv~~TG~y~~~~~p~~~~~~~~e~l 101 (292)
T PRK09875 27 DCRLDQYAFICQEMNDLMTRGVRNVIEMTNRYMGRNAQFMLDVMRE-----TGINVVACTGYYQDAFFPEHVATRSVQEL 101 (292)
T ss_pred ccccccHHHHHHHHHHHHHhCCCeEEecCCCccCcCHHHHHHHHHH-----hCCcEEEcCcCCCCccCCHHHhcCCHHHH
Confidence 33457899999999999999985 888888887 899999999985 889999863222 1 12
Q ss_pred HHHHhh----hcCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHH
Q 006566 175 ALRVAE----CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSY 250 (640)
Q Consensus 175 Al~Aa~----~v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~r 250 (640)
|..-++ .++.=-|-||-||--. ...-..|++| ++.|+...+.+++.|.||=+=+.+|.
T Consensus 102 a~~~i~ei~~Gi~gt~ikaGvIGeiG--~~~~~it~~E--------~kvl~Aaa~a~~~TG~pi~~Ht~~~~-------- 163 (292)
T PRK09875 102 AQEMVDEIEQGIDGTELKAGIIAEIG--SSEGKITPLE--------EKVFIAAALAHNQTGRPISTHTSFST-------- 163 (292)
T ss_pred HHHHHHHHHHhhccCCCcccEEEEEe--cCCCCCCHHH--------HHHHHHHHHHHHHHCCcEEEcCCCcc--------
Confidence 221111 1333335566553211 0000112222 34566677778888888844332221
Q ss_pred hCCChHHHHHHHHHHHHHHHHCCC--CcEEEEEEeCChhhHHHHHHHHHHHHHHcCCCcce-EEEeecCCCCCcceeehH
Q 006566 251 YGDSPRGMVESAFEFARICRKLDF--HNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPL-HLGVTEAGEGEDGRMKSA 327 (640)
Q Consensus 251 yGdtp~gMVeSAle~~~i~e~~~F--~diviSmKsSn~~~mV~AyRlL~~~m~~~g~dyPL-HLGVTEAG~gedGrIKSA 327 (640)
-++|.+++++++|. +.++|+ -.|...-...++.++++ |+--=+ ++|-. ....+. +-.
T Consensus 164 ----------~g~e~l~il~e~Gvd~~rvvi~--H~d~~~d~~~~~~l~~~----G~~l~fD~~g~~--~~~pd~--~r~ 223 (292)
T PRK09875 164 ----------MGLEQLALLQAHGVDLSRVTVG--HCDLKDNLDNILKMIDL----GAYVQFDTIGKN--SYYPDE--KRI 223 (292)
T ss_pred ----------chHHHHHHHHHcCcCcceEEEe--CCCCCCCHHHHHHHHHc----CCEEEeccCCCc--ccCCHH--HHH
Confidence 35677899999999 666665 34333345666666654 432111 22211 000111 225
Q ss_pred HHHHHHhhhcCCcEEEeec
Q 006566 328 IGIGTLLQDGLGDTIRVSL 346 (640)
Q Consensus 328 iGIG~LL~DGIGDTIRVSL 346 (640)
-.|=.|+..|.+|-|-+|-
T Consensus 224 ~~i~~L~~~Gy~drilLS~ 242 (292)
T PRK09875 224 AMLHALRDRGLLNRVMLSM 242 (292)
T ss_pred HHHHHHHhcCCCCeEEEeC
Confidence 6677788888888888764
No 474
>PF08901 DUF1847: Protein of unknown function (DUF1847); InterPro: IPR014997 This group of proteins are functionally uncharacterised. They contain 4 N-terminal cysteines that may form a zinc-binding domain.
Probab=37.14 E-value=81 Score=31.43 Aligned_cols=54 Identities=20% Similarity=0.221 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEEeCChh
Q 006566 219 VFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPV 287 (640)
Q Consensus 219 ~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGdtp~gMVeSAle~~~i~e~~~F~diviSmKsSn~~ 287 (640)
|+.++++.||+-|- =|||+ -+=-||.+.|--+.+|++..||.-+-+.+|.-.+.
T Consensus 42 RveEiieFak~mgy-kkiGi--------------AfCiGL~~EA~~~~~iL~~~gFev~sV~CKvg~i~ 95 (157)
T PF08901_consen 42 RVEEIIEFAKRMGY-KKIGI--------------AFCIGLRKEARILAKILEANGFEVYSVCCKVGGID 95 (157)
T ss_pred hHHHHHHHHHHcCC-Ceeee--------------hhhHhHHHHHHHHHHHHHHCCCEEEEEEecCCCcc
Confidence 68889999999874 47777 23469999999999999999999999999986643
No 475
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=36.96 E-value=94 Score=29.64 Aligned_cols=54 Identities=19% Similarity=0.247 Sum_probs=37.4
Q ss_pred CCC-HHHHHHHHHHHHHcCCC-EEEEecCCHHHHHHHHHHHHHhhcCCC--CcceeeccCCCHHHH
Q 006566 114 TKD-VAGTVEEVMRIADQGAD-LVRITVQGKREADACFEIKNSLVQKNY--NIPLVADIHFAPSVA 175 (640)
Q Consensus 114 T~D-v~atv~Qi~rl~~aGce-iVRvtvp~~~~A~~l~~I~~~L~~~g~--~iPLVADIHF~~~~A 175 (640)
|.. +.+-.+...++.+.||+ ++-|++.+..+.++.. ++ .+. +.||++|-+ .++|
T Consensus 46 t~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~---~~---~~~~~~f~lLsD~~--~~~~ 103 (155)
T cd03013 46 SAQHLPGYVENADELKAKGVDEVICVSVNDPFVMKAWG---KA---LGAKDKIRFLADGN--GEFT 103 (155)
T ss_pred chhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHHHHH---Hh---hCCCCcEEEEECCC--HHHH
Confidence 344 44566667888999995 9999999888755553 32 234 789999954 4444
No 476
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=36.92 E-value=5.4e+02 Score=27.28 Aligned_cols=80 Identities=19% Similarity=0.313 Sum_probs=52.0
Q ss_pred ccccccccCCCceeEEEceeecCCCCceEEEeccCCCCCCHHHHHHHHHHHHH-cCCCEEEEecCCHHHHHHHHHHHHHh
Q 006566 77 CESIHKTVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIAD-QGADLVRITVQGKREADACFEIKNSL 155 (640)
Q Consensus 77 c~s~~~~~Rr~Tr~V~VG~v~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~rl~~-aGceiVRvtvp~~~~A~~l~~I~~~L 155 (640)
+.-.....|--....-+.|+++||. ..+.+..++-..|+.+ +||+-|-|-=+ .+-++-++.+++
T Consensus 61 ~~~~~~V~r~~~~p~viaD~~fg~y------------~~~~~~av~~a~r~~~~aGa~aVkiEd~-~~~~~~I~al~~-- 125 (254)
T cd06557 61 IYHTRAVRRGAPRALVVADMPFGSY------------QTSPEQALRNAARLMKEAGADAVKLEGG-AEVAETIRALVD-- 125 (254)
T ss_pred HHHHHHHHhcCCCCeEEEeCCCCcc------------cCCHHHHHHHHHHHHHHhCCeEEEEcCc-HHHHHHHHHHHH--
Confidence 3333333343334544566666653 2346888999899888 99999999754 244555555554
Q ss_pred hcCCCCcceeeccCCCHHHH
Q 006566 156 VQKNYNIPLVADIHFAPSVA 175 (640)
Q Consensus 156 ~~~g~~iPLVADIHF~~~~A 175 (640)
..+|+++.|=++|+-.
T Consensus 126 ----agipV~gHiGL~pq~~ 141 (254)
T cd06557 126 ----AGIPVMGHIGLTPQSV 141 (254)
T ss_pred ----cCCCeeccccccceee
Confidence 4589999998888643
No 477
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=36.78 E-value=1.4e+02 Score=31.90 Aligned_cols=57 Identities=19% Similarity=0.257 Sum_probs=36.2
Q ss_pred hhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHh---C--------CC----------hHHHHHHHHHHHHHHHHCCCC
Q 006566 218 EVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYY---G--------DS----------PRGMVESAFEFARICRKLDFH 275 (640)
Q Consensus 218 ~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ry---G--------dt----------p~gMVeSAle~~~i~e~~~F~ 275 (640)
..+.++++.++++|..+=|=|| |.|-++.+.++ | |. ..|-.+.+++.++.+.+.|+.
T Consensus 87 pdl~eiv~~~~~~g~~v~l~TN-G~ll~~~~~~l~~~~~~~i~VSLDG~~e~hd~~~~~~g~f~~~l~~I~~l~~~G~~ 164 (318)
T TIGR03470 87 PEIDEIVRGLVARKKFVYLCTN-ALLLEKKLDKFEPSPYLTFSVHLDGLREHHDASVCREGVFDRAVEAIREAKARGFR 164 (318)
T ss_pred ccHHHHHHHHHHcCCeEEEecC-ceehHHHHHHHHhCCCcEEEEEEecCchhhchhhcCCCcHHHHHHHHHHHHHCCCc
Confidence 3478899999999987777888 56544433333 2 00 123456677777777777763
No 478
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=36.71 E-value=4.5e+02 Score=26.34 Aligned_cols=161 Identities=17% Similarity=0.231 Sum_probs=90.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCHH------HHHHHHHHHHHhhcCCCCcceeeccC---------CCHHHHHHHh
Q 006566 115 KDVAGTVEEVMRIADQGADLVRITVQGKR------EADACFEIKNSLVQKNYNIPLVADIH---------FAPSVALRVA 179 (640)
Q Consensus 115 ~Dv~atv~Qi~rl~~aGceiVRvtvp~~~------~A~~l~~I~~~L~~~g~~iPLVADIH---------F~~~~Al~Aa 179 (640)
.|.+...+|+.++...|||+|=+-+.-.. -.+.+..|++. +++|+|.-+= +++..-.+.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~~~~l~~lr~~-----~~~piI~T~R~~~eGG~~~~~~~~~~~ll 81 (224)
T PF01487_consen 7 STLEELLAELEEAESSGADAVELRLDYLENDSAEDISEQLAELRRS-----LDLPIIFTVRTKEEGGRFQGSEEEYLELL 81 (224)
T ss_dssp SSHHHHHHHHHHHHHTTTSEEEEEGGGSTTTSHHHHHHHHHHHHHH-----CTSEEEEE--BGGGTSSBSS-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEEeccccccChHHHHHHHHHHHHh-----CCCCEEEEecccccCCCCcCCHHHHHHHH
Confidence 57788899999999999999977765554 56677777764 5899997643 2332222222
Q ss_pred hhcCceeeCCCCCCchhhhccccccc-hHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCCChHHH
Q 006566 180 ECFDKIRVNPGNFADRRAQFEQLEYT-DDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGM 258 (640)
Q Consensus 180 ~~v~KVRINPGN~~d~~k~F~~~eYt-deeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGdtp~gM 258 (640)
+.+ +|.+ -.|.| +|+. -+++ ......++..++.+ |+-.| .. ..||..
T Consensus 82 ~~~--~~~~-~d~iD-------iE~~~~~~~-----------~~~~~~~~~~~~~i-I~S~H-~f--------~~tp~~- 129 (224)
T PF01487_consen 82 ERA--IRLG-PDYID-------IELDLFPDD-----------LKSRLAARKGGTKI-ILSYH-DF--------EKTPSW- 129 (224)
T ss_dssp HHH--HHHT-SSEEE-------EEGGCCHHH-----------HHHHHHHHHTTSEE-EEEEE-ES--------S---TH-
T ss_pred HHH--HHcC-CCEEE-------EEcccchhH-----------HHHHHHHhhCCCeE-EEEec-cC--------CCCCCH-
Confidence 221 2222 12323 2222 1111 11145556666666 56655 22 224422
Q ss_pred HHHHHHHHHHHHHCCCCcEEEEEEeCChhhHHHHHHHHHHHHHHcCCCcce-EEEeec
Q 006566 259 VESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPL-HLGVTE 315 (640)
Q Consensus 259 VeSAle~~~i~e~~~F~diviSmKsSn~~~mV~AyRlL~~~m~~~g~dyPL-HLGVTE 315 (640)
+...+.++-+.+.|-+=++|-+.+.+........+.+.+. .+. .+.|+ .++.-|
T Consensus 130 -~~l~~~~~~~~~~gadivKia~~~~~~~D~~~l~~~~~~~-~~~-~~~p~i~~~MG~ 184 (224)
T PF01487_consen 130 -EELIELLEEMQELGADIVKIAVMANSPEDVLRLLRFTKEF-REE-PDIPVIAISMGE 184 (224)
T ss_dssp -HHHHHHHHHHHHTT-SEEEEEEE-SSHHHHHHHHHHHHHH-HHH-TSSEEEEEEETG
T ss_pred -HHHHHHHHHHHhcCCCeEEEEeccCCHHHHHHHHHHHHHH-hhc-cCCcEEEEEcCC
Confidence 2266788888899999899999998876665544444433 222 56787 444433
No 479
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=36.60 E-value=74 Score=31.62 Aligned_cols=115 Identities=15% Similarity=0.239 Sum_probs=67.0
Q ss_pred HHHHHHHHHcCCCE-EEEecCCHHHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhhcCceeeCCCCCCchhhhc
Q 006566 121 VEEVMRIADQGADL-VRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQF 199 (640)
Q Consensus 121 v~Qi~rl~~aGcei-VRvtvp~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~v~KVRINPGN~~d~~k~F 199 (640)
++.|.+.....+++ +|-..-+-.. -....+.|+..|+. |+..=-.-|-.+|..|++.+-.=+|+===+.+++.-
T Consensus 43 ~~~i~~~ls~~G~i~~~R~Y~~a~a---~~~l~~~l~~~Gf~-pv~~kG~~Dv~laIDame~~~~~~iD~~vLvSgD~D- 117 (160)
T TIGR00288 43 LDEIREILSEYGDIKIGKVLLNQYA---SDKLIEAVVNQGFE-PIIVAGDVDVRMAVEAMELIYNPNIDAVALVTRDAD- 117 (160)
T ss_pred HHHHHHHHHhcCCeEEEEEEechhc---cHHHHHHHHHCCce-EEEecCcccHHHHHHHHHHhccCCCCEEEEEeccHh-
Confidence 45555555544443 3433322111 22446778888997 654333566788888887741112222122333332
Q ss_pred cccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCCChHHHHHHHHHHHHHHHH
Q 006566 200 EQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRK 271 (640)
Q Consensus 200 ~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGdtp~gMVeSAle~~~i~e~ 271 (640)
|.|||++.||+|+-+ ||+-.. .-||.+++.+|=+|+.+-++
T Consensus 118 --------------------F~~Lv~~lre~G~~V-~v~g~~----------~~ts~~L~~acd~FI~L~~~ 158 (160)
T TIGR00288 118 --------------------FLPVINKAKENGKET-IVIGAE----------PGFSTALQNSADIAIILGEE 158 (160)
T ss_pred --------------------HHHHHHHHHHCCCEE-EEEeCC----------CCChHHHHHhcCeEEeCCCC
Confidence 999999999999877 454111 13788999999888766543
No 480
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=36.59 E-value=5.2e+02 Score=27.04 Aligned_cols=149 Identities=17% Similarity=0.177 Sum_probs=82.5
Q ss_pred EEEceeecCCCCceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEe---------------------------cCCHH
Q 006566 91 VMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRIT---------------------------VQGKR 143 (640)
Q Consensus 91 V~VG~v~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~rl~~aGceiVRvt---------------------------vp~~~ 143 (640)
+.++++.+ .|||-+=|++-+. +.+.++++.++|+..|=+- .++..
T Consensus 3 ~~~~g~~l--~npi~~aag~~~~------~~~~~~~~~~~G~g~iv~kt~~~~~~~gn~~pr~~~~~~~~~n~~gl~~~g 74 (300)
T TIGR01037 3 VELFGIRF--KNPLILASGIMGS------GVESLRRIDRSGAGAVVTKSIGLEPRPGYRNPTIVETPCGMLNAIGLQNPG 74 (300)
T ss_pred EEECCEEC--CCCCEeCCcCCCC------CHHHHHHHHHcCCcEEEeCccccccccCCCCCeEEecccHHhhhccCCCcC
Confidence 56777777 5899998865422 3445556777788866441 22222
Q ss_pred HHHHHHHHHHHhhcCCCCcceeeccCC-CHHHHHHHhhh-------cCceeeCCCCCCchhhhccccccchHHHHHHHhh
Q 006566 144 EADACFEIKNSLVQKNYNIPLVADIHF-APSVALRVAEC-------FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQH 215 (640)
Q Consensus 144 ~A~~l~~I~~~L~~~g~~iPLVADIHF-~~~~Al~Aa~~-------v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~ 215 (640)
..+.++.+++. .+..++||++=|+- ++.-..++++. ++-|=||=| .+..+ -|+ .+|....+
T Consensus 75 ~~~~~~~~~~~--~~~~~~pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~---cP~~~----~~g-~~l~~~~~- 143 (300)
T TIGR01037 75 VEAFLEELKPV--REEFPTPLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLS---CPHVK----GGG-IAIGQDPE- 143 (300)
T ss_pred HHHHHHHHHHH--hccCCCcEEEEeecCCHHHHHHHHHHHHhccCccCEEEEECC---CCCCC----CCc-cccccCHH-
Confidence 33446666553 23457899999954 45444444443 456777755 21110 011 11222222
Q ss_pred hHhhHHHHHHHHHHc-CCe--EEEeeCCCCCcHhHHHHhCCChHHHHHHHHHHHHHHHHCCCCcEEEE
Q 006566 216 IEEVFSPLVEKCKKY-GRA--VRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFS 280 (640)
Q Consensus 216 I~~~f~~lV~~~Ke~-g~a--IRIGvNhGSLs~ril~ryGdtp~gMVeSAle~~~i~e~~~F~diviS 280 (640)
.+.++++..|+. ++| +||.. + ++...++++.+++.|.+-|+++
T Consensus 144 ---~~~eiv~~vr~~~~~pv~vKi~~---------------~----~~~~~~~a~~l~~~G~d~i~v~ 189 (300)
T TIGR01037 144 ---LSADVVKAVKDKTDVPVFAKLSP---------------N----VTDITEIAKAAEEAGADGLTLI 189 (300)
T ss_pred ---HHHHHHHHHHHhcCCCEEEECCC---------------C----hhhHHHHHHHHHHcCCCEEEEE
Confidence 234455555543 343 34321 1 1345788899999999888876
No 481
>cd06842 PLPDE_III_Y4yA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Y4yA. This subfamily is composed of the hypothetical Rhizobium sp. protein Y4yA and similar uncharacterized bacterial proteins. These proteins are homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarboxylases.
Probab=36.58 E-value=3.1e+02 Score=30.52 Aligned_cols=138 Identities=12% Similarity=0.088 Sum_probs=70.0
Q ss_pred HHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCCCcceeeccCCCHH----H-HHHHhhhcCceeeCCCCCCc
Q 006566 120 TVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPS----V-ALRVAECFDKIRVNPGNFAD 194 (640)
Q Consensus 120 tv~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~----~-Al~Aa~~v~KVRINPGN~~d 194 (640)
..+=++.+.++|| -+.|-+..|++.+.+ .|++-+ +|+|+.. - ...|++. .|+|| +-+
T Consensus 49 ~~~il~~l~~~G~---g~dvaS~~E~~~~~~-------~G~~~~---~I~~~g~~k~~~~i~~a~~~--gi~i~---vDs 110 (423)
T cd06842 49 SLALVRAAAAAGI---GVDVASLAELRQALA-------AGVRGD---RIVATGPAKTDEFLWLAVRH--GATIA---VDS 110 (423)
T ss_pred CHHHHHHHHHcCC---CEEECCHHHHHHHHH-------CCCCCC---eEEEECCCCCHHHHHHHHhC--CCEEE---ECC
Confidence 3444556778898 789999999876543 355432 3455521 1 2223322 24443 322
Q ss_pred hhhhccccccchHHHHHHHhhhHhhHHHHHHHHHH-c----CCeEEEeeCCCCCcHhHHHHhCCChHHHHHHHHHHHHHH
Q 006566 195 RRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKK-Y----GRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARIC 269 (640)
Q Consensus 195 ~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke-~----g~aIRIGvNhGSLs~ril~ryGdtp~gMVeSAle~~~i~ 269 (640)
. +| +..+.+.|++ + .+-+||-+..+ .-++|+|-+++ .+.+.++.+
T Consensus 111 -~--------------~e-------l~~l~~~a~~~~~~~~~v~lRIn~~~~----~~~sRfGi~~~----e~~~~~~~i 160 (423)
T cd06842 111 -L--------------DE-------LDRLLALARGYTTGPARVLLRLSPFPA----SLPSRFGMPAA----EVRTALERL 160 (423)
T ss_pred -H--------------HH-------HHHHHHHHHhcCCCCCEEEEEEeCCCC----CCCCCCCCCHH----HHHHHHHHH
Confidence 1 12 3444455555 3 34455544332 44789997664 355666666
Q ss_pred HHC--CCC--cEEEEEEeCChhhHHHHHHHHH---HHHHHcCC
Q 006566 270 RKL--DFH--NFLFSMKASNPVVMVQAYRLLV---AEMYVHGW 305 (640)
Q Consensus 270 e~~--~F~--diviSmKsSn~~~mV~AyRlL~---~~m~~~g~ 305 (640)
++. ++. =+-+-+-|.+.....++.+.+. +++.+.|+
T Consensus 161 ~~~~~~l~l~Glh~H~gs~~~~~~~~~~~~~~~~~~~l~~~g~ 203 (423)
T cd06842 161 AQLRERVRLVGFHFHLDGYSAAQRVAALQECLPLIDRARALGL 203 (423)
T ss_pred HhcCCCCeEEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence 665 332 2333333334444445555544 44444443
No 482
>cd01145 TroA_c Periplasmic binding protein TroA_c. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=36.51 E-value=2.3e+02 Score=28.12 Aligned_cols=139 Identities=15% Similarity=0.218 Sum_probs=87.8
Q ss_pred cCCCCceEEEeccC--CCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhh----cCCCCccee------
Q 006566 98 IGSEHPIRVQTMTT--NDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLV----QKNYNIPLV------ 165 (640)
Q Consensus 98 IGG~~PI~VQSMt~--t~T~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~----~~g~~iPLV------ 165 (640)
|||+ -+.|+||.. .+..+.+-+-+|+++|.+ +|++=..=.+.+ .-+..+.+.+. ..|+..-..
T Consensus 19 I~gd-~~~V~~l~p~g~dpH~ye~tp~d~~~l~~--Adliv~~G~~~E--~~~~k~~~~~~~~~~~~~i~~~~~~~~~~~ 93 (203)
T cd01145 19 VAGD-AVIVSALTPPGVDPHQYQLKPSDIAKMRK--ADLVVTSGHELE--GFEPKLAELSSNSKVQPGIKILIEDSDTVG 93 (203)
T ss_pred HcCC-cEEEEEecCCCCCcccccCCHHHHHHHhc--CCEEEEcCCCHH--HHHHHHHHhccccccCCCcccccccccccc
Confidence 5554 588999865 567999999999999985 577755555665 34566665431 122221110
Q ss_pred ------------ecc--CCCHHHHHHHhhh-cCc-eeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHH
Q 006566 166 ------------ADI--HFAPSVALRVAEC-FDK-IRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKK 229 (640)
Q Consensus 166 ------------ADI--HF~~~~Al~Aa~~-v~K-VRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke 229 (640)
.|= .++|..|...++. .++ +++.|-|=.. |+. .-++|.++|+.+.+++...++.++.
T Consensus 94 ~~~~~~~~~~~~~dPH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~----y~~---N~~~~~~~l~~l~~~~~~~l~~~~~ 166 (203)
T cd01145 94 MVDRAMGDYHGKGNPHVWLDPNNAPALAKALADALIELDPSEQEE----YKE---NLRVFLAKLNKLLREWERQFEGLKG 166 (203)
T ss_pred cccccccccCCCCCcCeecCHHHHHHHHHHHHHHHHHhCcccHHH----HHH---HHHHHHHHHHHHHHHHHHHhhccCC
Confidence 122 2467777777665 333 3578876221 111 1356999999999999988887664
Q ss_pred cCCeEEEeeCCCCCcHhHHHHhCC
Q 006566 230 YGRAVRIGTNHGSLSDRIMSYYGD 253 (640)
Q Consensus 230 ~g~aIRIGvNhGSLs~ril~ryGd 253 (640)
. .+=|.|.++. -+..+||-
T Consensus 167 ~----~~v~~H~af~-Y~~~~yGl 185 (203)
T cd01145 167 I----QVVAYHPSYQ-YLADWLGI 185 (203)
T ss_pred C----eEEEecccHH-HHHHHcCC
Confidence 3 2568888873 46777764
No 483
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=36.50 E-value=3.6e+02 Score=27.35 Aligned_cols=90 Identities=14% Similarity=0.159 Sum_probs=67.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCCCcc--eeeccCCCHHHHHHHhhh-cCceeeCCCC
Q 006566 115 KDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIP--LVADIHFAPSVALRVAEC-FDKIRVNPGN 191 (640)
Q Consensus 115 ~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~iP--LVADIHF~~~~Al~Aa~~-v~KVRINPGN 191 (640)
.|.+..++.++.+.+.|+.++=||..+....+.++.++++ ++.| +=|=-=+++.-+..|+++ ++-+= -|+
T Consensus 19 ~~~~~~~~~~~a~~~gGi~~iEvt~~~~~~~~~i~~l~~~-----~~~~~~iGaGTV~~~~~~~~a~~aGA~fiv-sp~- 91 (206)
T PRK09140 19 ITPDEALAHVGALIEAGFRAIEIPLNSPDPFDSIAALVKA-----LGDRALIGAGTVLSPEQVDRLADAGGRLIV-TPN- 91 (206)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHH-----cCCCcEEeEEecCCHHHHHHHHHcCCCEEE-CCC-
Confidence 4789999999999999999999999888888899999885 5433 223334567777787777 54332 233
Q ss_pred CCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEee
Q 006566 192 FADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT 238 (640)
Q Consensus 192 ~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGv 238 (640)
+ -.++++.|+++|.++=+|+
T Consensus 92 ~---------------------------~~~v~~~~~~~~~~~~~G~ 111 (206)
T PRK09140 92 T---------------------------DPEVIRRAVALGMVVMPGV 111 (206)
T ss_pred C---------------------------CHHHHHHHHHCCCcEEccc
Confidence 1 1358899999999997775
No 484
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=36.48 E-value=81 Score=32.40 Aligned_cols=60 Identities=12% Similarity=0.174 Sum_probs=48.7
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHH-HHHHhhcCCCCcceeeccC
Q 006566 110 TTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFE-IKNSLVQKNYNIPLVADIH 169 (640)
Q Consensus 110 t~t~T~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~A~~l~~-I~~~L~~~g~~iPLVADIH 169 (640)
|-..|..+.+--+.-.++.+.|||++=+++.+...-.+-.+ |++...=.+++.|+|||.-
T Consensus 46 TfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~fsH~aW~~~~~~~~gi~~i~~PmiaD~~ 106 (194)
T COG0450 46 TFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSVFSHKAWKATIREAGGIGKIKFPMIADPK 106 (194)
T ss_pred CccCcchHHHHHhhhHHHHHcCCEEEEEecCcHHHHHHHHhcHHhcCCccceecceEEcCc
Confidence 55667889999999999999999999999999988877655 4554444448899999953
No 485
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=36.39 E-value=4.9e+02 Score=26.66 Aligned_cols=132 Identities=14% Similarity=0.150 Sum_probs=74.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCHH-------HHHHHHHHHHHhhcCCCCcceeeccC-CCHHHHH-HHhhh-cCc
Q 006566 115 KDVAGTVEEVMRIADQGADLVRITVQGKR-------EADACFEIKNSLVQKNYNIPLVADIH-FAPSVAL-RVAEC-FDK 184 (640)
Q Consensus 115 ~Dv~atv~Qi~rl~~aGceiVRvtvp~~~-------~A~~l~~I~~~L~~~g~~iPLVADIH-F~~~~Al-~Aa~~-v~K 184 (640)
.|...--+|+.+|.++|++.+=+-+-|-. -.+.++.||+ .+-++|+-+++| .+|.... .++++ ++-
T Consensus 16 ~d~~~l~~~~~~l~~~~~~~~H~DimDg~fvpn~~~G~~~v~~lr~----~~~~~~lDvHLm~~~p~~~i~~~~~~Gad~ 91 (228)
T PTZ00170 16 ADFSKLADEAQDVLSGGADWLHVDVMDGHFVPNLSFGPPVVKSLRK----HLPNTFLDCHLMVSNPEKWVDDFAKAGASQ 91 (228)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEecccCccCCCcCcCHHHHHHHHh----cCCCCCEEEEECCCCHHHHHHHHHHcCCCE
Confidence 45556678999999999999988755432 2334445544 344789844444 3344433 33333 443
Q ss_pred eeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCCChHHHHHHHHH
Q 006566 185 IRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFE 264 (640)
Q Consensus 185 VRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGdtp~gMVeSAle 264 (640)
|=+-.-. . .+.+...++.+|++|...=|.+| -|.+...+..|=+ ...++..+
T Consensus 92 itvH~ea--~----------------------~~~~~~~l~~ik~~G~~~gval~-p~t~~e~l~~~l~--~~~vD~Vl- 143 (228)
T PTZ00170 92 FTFHIEA--T----------------------EDDPKAVARKIREAGMKVGVAIK-PKTPVEVLFPLID--TDLVDMVL- 143 (228)
T ss_pred EEEeccC--C----------------------chHHHHHHHHHHHCCCeEEEEEC-CCCCHHHHHHHHc--cchhhhHH-
Confidence 3331110 0 01156688999999975544555 3345555555511 13333333
Q ss_pred HHHHHHHCCCCcEEEE
Q 006566 265 FARICRKLDFHNFLFS 280 (640)
Q Consensus 265 ~~~i~e~~~F~diviS 280 (640)
-++.+-||..-.++
T Consensus 144 --~m~v~pG~~gq~~~ 157 (228)
T PTZ00170 144 --VMTVEPGFGGQSFM 157 (228)
T ss_pred --hhhcccCCCCcEec
Confidence 36777888876554
No 486
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=36.31 E-value=4.9e+02 Score=26.64 Aligned_cols=138 Identities=12% Similarity=0.162 Sum_probs=74.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCCCcceeeccCC-----CHHHHH-HHhhh-cCce
Q 006566 113 DTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHF-----APSVAL-RVAEC-FDKI 185 (640)
Q Consensus 113 ~T~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~iPLVADIHF-----~~~~Al-~Aa~~-v~KV 185 (640)
|..|.+..++- +.+.|.++.=+-+-+.-=..-=.++.+.|++. +.++++|+|| +|..+. .+.++ ++-|
T Consensus 10 D~~~~~~~l~~---~~~~~~~~~~ikvg~~~f~~~G~~~i~~l~~~--~~~i~~D~Kl~Di~~t~~~~i~~~~~~gad~i 84 (230)
T PRK00230 10 DFPSKEEALAF---LDQLDPAVLFVKVGMELFTAGGPQFVRELKQR--GFKVFLDLKLHDIPNTVAKAVRALAKLGVDMV 84 (230)
T ss_pred CCCCHHHHHHH---HHhcCCcccEEEEcHHHHHhcCHHHHHHHHhc--CCCEEEEeehhhccccHHHHHHHHHHcCCCEE
Confidence 66667755554 44556554434433321111102233334444 4689999999 554433 34455 6667
Q ss_pred eeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeC-CCCCcHhHHHHhCCChHHHHHHHHH
Q 006566 186 RVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTN-HGSLSDRIMSYYGDSPRGMVESAFE 264 (640)
Q Consensus 186 RINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvN-hGSLs~ril~ryGdtp~gMVeSAle 264 (640)
=+.+ .+. .. .++..++.+++++-..=+||- -.|++.+=+..-|. ..++-+.++.
T Consensus 85 tvH~--~ag-~~---------------------~i~~~~~~~~~~~~~~~~~V~~lts~~~~~l~~~~~-~~~~~~~v~~ 139 (230)
T PRK00230 85 NVHA--SGG-PR---------------------MMKAAREALEPKSRPLLIAVTVLTSMDEEDLAELGI-NLSLEEQVLR 139 (230)
T ss_pred EEcc--cCC-HH---------------------HHHHHHHHhhccCCCeEEEEEECCCCCHHHHHhCcC-CCCHHHHHHH
Confidence 7765 233 22 366677777765323345644 55665433332232 1235667778
Q ss_pred HHHHHHHCCCCcEEEE
Q 006566 265 FARICRKLDFHNFLFS 280 (640)
Q Consensus 265 ~~~i~e~~~F~diviS 280 (640)
..+++.+.|-+=+|.|
T Consensus 140 ~a~~a~~~g~dgvv~~ 155 (230)
T PRK00230 140 LAKLAQEAGLDGVVCS 155 (230)
T ss_pred HHHHHHHcCCeEEEeC
Confidence 8889999987666665
No 487
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=36.15 E-value=92 Score=33.21 Aligned_cols=42 Identities=17% Similarity=0.378 Sum_probs=34.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCCCccee
Q 006566 116 DVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLV 165 (640)
Q Consensus 116 Dv~atv~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~iPLV 165 (640)
+.+..+++.+++++|||+.+=+-.... +..+.|.+. .++|++
T Consensus 158 ~a~~~i~~A~a~e~AGA~~ivlE~vp~---~~a~~It~~-----l~iP~i 199 (263)
T TIGR00222 158 AAKKLLEDALALEEAGAQLLVLECVPV---ELAAKITEA-----LAIPVI 199 (263)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCcH---HHHHHHHHh-----CCCCEE
Confidence 367999999999999999998876653 566677775 779987
No 488
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=36.00 E-value=2e+02 Score=30.97 Aligned_cols=84 Identities=17% Similarity=0.235 Sum_probs=47.4
Q ss_pred CCceEEEeccCCCCCCHH-HHHHHHHHHHHcC----CCEEEEecCCHHHHHHHHHHHHHhhcCCCCcceeecc------C
Q 006566 101 EHPIRVQTMTTNDTKDVA-GTVEEVMRIADQG----ADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADI------H 169 (640)
Q Consensus 101 ~~PI~VQSMt~t~T~Dv~-atv~Qi~rl~~aG----ceiVRvtvp~~~~A~~l~~I~~~L~~~g~~iPLVADI------H 169 (640)
..||-+-+||-.. .+.+ -+.+-.....++| .--.|...-+.+..+.++.+|+. .-+.|++|-+ -
T Consensus 52 ~~Pi~ia~mtGg~-~~~~~in~~La~~a~~~g~~~~~Gs~~~~~~~~e~~~~~~~vr~~----~~~~p~~~Nl~~~~~~~ 126 (326)
T cd02811 52 SAPLLISAMTGGS-EKAKEINRNLAEAAEELGIAMGVGSQRAALEDPELAESFTVVREA----PPNGPLIANLGAVQLNG 126 (326)
T ss_pred cCCEEEeCCCCCC-hHHHHHHHHHHHHHHHcCCCeEecCchhhccChhhhhHHHHHHHh----CCCceEEeecCccccCC
Confidence 7999999998653 1111 1222333344555 11223333355556777777774 3347877654 3
Q ss_pred CCHHHHHHHhhh--cCceeeCC
Q 006566 170 FAPSVALRVAEC--FDKIRVNP 189 (640)
Q Consensus 170 F~~~~Al~Aa~~--v~KVRINP 189 (640)
+++..+..+++. ++.+-||-
T Consensus 127 ~~~~~~~~~i~~~~adalel~l 148 (326)
T cd02811 127 YGVEEARRAVEMIEADALAIHL 148 (326)
T ss_pred CCHHHHHHHHHhcCCCcEEEeC
Confidence 477777777774 55555543
No 489
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=35.96 E-value=79 Score=33.81 Aligned_cols=55 Identities=18% Similarity=0.302 Sum_probs=49.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCCCcceeeccC
Q 006566 113 DTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIH 169 (640)
Q Consensus 113 ~T~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~iPLVADIH 169 (640)
...+.+..++..++=.++||+ .+-+|=.=+++.+.+..+++++.|+++|+++=|-
T Consensus 158 ~~~~~~~dl~~Lk~K~~aGA~--~~iTQ~~Fd~~~~~~f~~~~~~~Gi~vPIi~GI~ 212 (296)
T PRK09432 158 EAKSAQADLINLKRKVDAGAN--RAITQFFFDVESYLRFRDRCVSAGIDVEIVPGIL 212 (296)
T ss_pred CCCCHHHHHHHHHHHHHcCCC--eeecccccchHHHHHHHHHHHHcCCCCCEEeecc
Confidence 345677888889999999999 7889999999999999999999999999999875
No 490
>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=35.79 E-value=6.8e+02 Score=28.14 Aligned_cols=139 Identities=14% Similarity=0.267 Sum_probs=78.9
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCCHHHH--------HHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhhcCce
Q 006566 114 TKDVAGTVEEVMRIADQGADLVRITVQGKREA--------DACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKI 185 (640)
Q Consensus 114 T~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~A--------~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~v~KV 185 (640)
.++.+..+++++.+.+.|+.-|.++-++.-.- ..+..+-+.|.+ + .-+.+|
T Consensus 176 sr~~e~Iv~Ei~~l~~~G~~eI~l~~~~~~~yg~d~~~~~~~l~~Ll~~l~~----~-----------------~g~~~i 234 (446)
T PRK14337 176 SRSSAAVLDECRALVDRGAREITLLGQNVNSYGQDKHGDGTSFAQLLHKVAA----L-----------------PGLERL 234 (446)
T ss_pred eCCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCCCccHHHHHHHHHh----c-----------------CCCcEE
Confidence 46789999999999999998888887664210 112222221110 0 012345
Q ss_pred ee---CCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcC---CeEEEeeCCCCCcHhHHHHhCC--ChHH
Q 006566 186 RV---NPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYG---RAVRIGTNHGSLSDRIMSYYGD--SPRG 257 (640)
Q Consensus 186 RI---NPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g---~aIRIGvNhGSLs~ril~ryGd--tp~g 257 (640)
|+ +|-++.+ ++++..++.+ .-+-||+-||| +++|.+++- |.
T Consensus 235 r~~~~~p~~i~~---------------------------ell~~l~~~~~~~~~l~iglQSgs--d~vLk~M~R~~t~-- 283 (446)
T PRK14337 235 RFTTPHPKDIAP---------------------------EVIEAFGELPNLCPRLHLPLQSGS--DRILKAMGRKYDM-- 283 (446)
T ss_pred EEccCCcccCCH---------------------------HHHHHHHhCCcccCeEEECCCCCC--HHHHHhCCCCCCH--
Confidence 54 4544432 2344444432 46778887765 888888872 54
Q ss_pred HHHHHHHHHHHHHHCCCCcEEEE--EEeCChhhHHHHHHHHHHHHHHcCCCc
Q 006566 258 MVESAFEFARICRKLDFHNFLFS--MKASNPVVMVQAYRLLVAEMYVHGWDY 307 (640)
Q Consensus 258 MVeSAle~~~i~e~~~F~diviS--mKsSn~~~mV~AyRlL~~~m~~~g~dy 307 (640)
+...+.++.+++.+ .++.++ +=.--|-.+.+.++...+.+.+.++++
T Consensus 284 --e~~~~~v~~lr~~~-~~i~i~~d~IvG~PgET~ed~~~tl~~l~~~~~~~ 332 (446)
T PRK14337 284 --ARYLDIVTDLRAAR-PDIALTTDLIVGFPGETEEDFEQTLEAMRTVGFAS 332 (446)
T ss_pred --HHHHHHHHHHHHhC-CCCeEEEeEEEECCCCCHHHHHHHHHHHHhcCCCe
Confidence 44445556666652 333222 222335566777777777777777653
No 491
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=35.78 E-value=1.8e+02 Score=31.55 Aligned_cols=77 Identities=22% Similarity=0.248 Sum_probs=57.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEec-----C--CH----H---HHHHHHHHHHHhhcCCCCcceeeccCC-CHHHHHHHh
Q 006566 115 KDVAGTVEEVMRIADQGADLVRITV-----Q--GK----R---EADACFEIKNSLVQKNYNIPLVADIHF-APSVALRVA 179 (640)
Q Consensus 115 ~Dv~atv~Qi~rl~~aGceiVRvtv-----p--~~----~---~A~~l~~I~~~L~~~g~~iPLVADIHF-~~~~Al~Aa 179 (640)
.|.+.+++=+++|+++|.|++=|+. + .. . -.+..++||+. .++|+++.--+ ++..|..++
T Consensus 221 ~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~-----v~iPVi~~G~i~~~~~a~~~i 295 (353)
T cd02930 221 STWEEVVALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRA-----VDIPVIASNRINTPEVAERLL 295 (353)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHh-----CCCCEEEcCCCCCHHHHHHHH
Confidence 4778899999999999999998863 1 11 0 12334566664 78999999775 799899998
Q ss_pred hh--cCceeeCCCCCCchh
Q 006566 180 EC--FDKIRVNPGNFADRR 196 (640)
Q Consensus 180 ~~--v~KVRINPGN~~d~~ 196 (640)
+. +|-|-+-=+-++|++
T Consensus 296 ~~g~~D~V~~gR~~l~dP~ 314 (353)
T cd02930 296 ADGDADMVSMARPFLADPD 314 (353)
T ss_pred HCCCCChhHhhHHHHHCcc
Confidence 85 888887666666655
No 492
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=35.70 E-value=60 Score=34.99 Aligned_cols=48 Identities=13% Similarity=0.288 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCCCcceeeccC
Q 006566 115 KDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIH 169 (640)
Q Consensus 115 ~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~iPLVADIH 169 (640)
.+.+.+++..++-.+||+|.|=+ |+.++.+.++.+.+. ++.|+++.+.
T Consensus 162 ~g~deaI~Ra~aY~eAGAD~ifi--~~~~~~~ei~~~~~~-----~~~P~~~nv~ 209 (294)
T TIGR02319 162 FGLDEAIRRSREYVAAGADCIFL--EAMLDVEEMKRVRDE-----IDAPLLANMV 209 (294)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEe--cCCCCHHHHHHHHHh-----cCCCeeEEEE
Confidence 57899999999999999999877 556677778888885 6678765443
No 493
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=35.67 E-value=4.6e+02 Score=26.11 Aligned_cols=154 Identities=14% Similarity=0.157 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCH------HHHHHHHHHHHHhhcCCCCcceeeccCCCH-HHHHHHhhh-cCceeeCCC
Q 006566 119 GTVEEVMRIADQGADLVRITVQGK------READACFEIKNSLVQKNYNIPLVADIHFAP-SVALRVAEC-FDKIRVNPG 190 (640)
Q Consensus 119 atv~Qi~rl~~aGceiVRvtvp~~------~~A~~l~~I~~~L~~~g~~iPLVADIHF~~-~~Al~Aa~~-v~KVRINPG 190 (640)
.-++.++.+.+.|++.+=++--+- ..-+.+++|++. +++|+.++-...- .-+..+.+. +++|=++=-
T Consensus 31 ~~~~~a~~~~~~g~~~i~v~dld~~~~g~~~~~~~i~~i~~~-----~~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~~ 105 (233)
T PRK00748 31 DPVAQAKAWEDQGAKWLHLVDLDGAKAGKPVNLELIEAIVKA-----VDIPVQVGGGIRSLETVEALLDAGVSRVIIGTA 105 (233)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCccccCCcccHHHHHHHHHH-----CCCCEEEcCCcCCHHHHHHHHHcCCCEEEECch
Confidence 445667778889999888886322 233444445453 7899999977763 445555555 777644322
Q ss_pred CCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCCChHHHHHHHHHHHHHHH
Q 006566 191 NFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICR 270 (640)
Q Consensus 191 N~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGdtp~gMVeSAle~~~i~e 270 (640)
-+- +.++ +.++++..++. +.+-|-+-.|.+.- .|-.. ..-.+..|+++.++
T Consensus 106 ~l~------------~~~~----------l~ei~~~~~~~-i~vsid~k~~~v~~-----~g~~~-~~~~~~~e~~~~~~ 156 (233)
T PRK00748 106 AVK------------NPEL----------VKEACKKFPGK-IVVGLDARDGKVAT-----DGWLE-TSGVTAEDLAKRFE 156 (233)
T ss_pred HHh------------CHHH----------HHHHHHHhCCC-ceeeeeccCCEEEE-----ccCee-cCCCCHHHHHHHHH
Confidence 222 2221 33333333222 33333222121110 11100 00124578899999
Q ss_pred HCCCCcEEEE-EEeCChh--hHHHHHHHHHHHHHHcCCCcceEE
Q 006566 271 KLDFHNFLFS-MKASNPV--VMVQAYRLLVAEMYVHGWDYPLHL 311 (640)
Q Consensus 271 ~~~F~diviS-mKsSn~~--~mV~AyRlL~~~m~~~g~dyPLHL 311 (640)
+.|...+.+- .+..-.. .-.+.++.+.+. .+.|+-.
T Consensus 157 ~~g~~~ii~~~~~~~g~~~G~d~~~i~~l~~~-----~~ipvia 195 (233)
T PRK00748 157 DAGVKAIIYTDISRDGTLSGPNVEATRELAAA-----VPIPVIA 195 (233)
T ss_pred hcCCCEEEEeeecCcCCcCCCCHHHHHHHHHh-----CCCCEEE
Confidence 9999876554 4432211 114556666665 5677543
No 494
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=35.61 E-value=29 Score=39.45 Aligned_cols=47 Identities=23% Similarity=0.440 Sum_probs=32.8
Q ss_pred HHHHHHHHHHcCCCEEEEe--------cCC-----HHHHHHHHHHHHHhhcCCCCcceeecc
Q 006566 120 TVEEVMRIADQGADLVRIT--------VQG-----KREADACFEIKNSLVQKNYNIPLVADI 168 (640)
Q Consensus 120 tv~Qi~rl~~aGceiVRvt--------vp~-----~~~A~~l~~I~~~L~~~g~~iPLVADI 168 (640)
|-+|.+.|++||+|.+||- +|. .-.+-|..+..+- +.+..+|+|||-
T Consensus 302 T~~qa~nLI~aGaDgLrVGMGsGSiCiTqevma~GrpQ~TAVy~va~~--A~q~gvpviADG 361 (503)
T KOG2550|consen 302 TKEQAANLIAAGADGLRVGMGSGSICITQKVMACGRPQGTAVYKVAEF--ANQFGVPCIADG 361 (503)
T ss_pred eHHHHHHHHHccCceeEeccccCceeeeceeeeccCCcccchhhHHHH--HHhcCCceeecC
Confidence 5699999999999999984 332 2234444444442 335889999994
No 495
>PRK08005 epimerase; Validated
Probab=35.49 E-value=2.7e+02 Score=28.63 Aligned_cols=82 Identities=12% Similarity=0.104 Sum_probs=48.7
Q ss_pred CceEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHH-HHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhh
Q 006566 102 HPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKR-EADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAE 180 (640)
Q Consensus 102 ~PI~VQSMt~t~T~Dv~atv~Qi~rl~~aGceiVRvtvp~~~-~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~ 180 (640)
-|+-|-=|.+. --..+..++++||++|=+-+-... -.+.+..||+ .|...=|.=.-+=.......-++
T Consensus 59 ~~~DvHLMv~~-------P~~~i~~~~~~gad~It~H~Ea~~~~~~~l~~Ik~----~G~k~GlAlnP~Tp~~~i~~~l~ 127 (210)
T PRK08005 59 HPLSFHLMVSS-------PQRWLPWLAAIRPGWIFIHAESVQNPSEILADIRA----IGAKAGLALNPATPLLPYRYLAL 127 (210)
T ss_pred CCeEEEeccCC-------HHHHHHHHHHhCCCEEEEcccCccCHHHHHHHHHH----cCCcEEEEECCCCCHHHHHHHHH
Confidence 45666666653 234788899999998777655322 2345566665 47765444333322333334445
Q ss_pred hcCcee---eCCCCCCc
Q 006566 181 CFDKIR---VNPGNFAD 194 (640)
Q Consensus 181 ~v~KVR---INPGN~~d 194 (640)
.+|.|= +|||--|.
T Consensus 128 ~vD~VlvMsV~PGf~GQ 144 (210)
T PRK08005 128 QLDALMIMTSEPDGRGQ 144 (210)
T ss_pred hcCEEEEEEecCCCccc
Confidence 577665 79998765
No 496
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=35.46 E-value=6.4e+02 Score=27.73 Aligned_cols=122 Identities=19% Similarity=0.276 Sum_probs=84.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecC--------CHHH--------------------H----HHHHHHHHHhhcCCC
Q 006566 113 DTKDVAGTVEEVMRIADQGADLVRITVQ--------GKRE--------------------A----DACFEIKNSLVQKNY 160 (640)
Q Consensus 113 ~T~Dv~atv~Qi~rl~~aGceiVRvtvp--------~~~~--------------------A----~~l~~I~~~L~~~g~ 160 (640)
+--|++-..+-|..-+++|||-|-+-+- +... + +.++.+++.-+ ..
T Consensus 11 H~Gdl~~A~~lI~~A~~aGadaVKfQt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~L~~~~~--~~ 88 (329)
T TIGR03569 11 HNGSLELAKKLVDAAAEAGADAVKFQTFKAEDLVSKNAPKAEYQKINTGAEESQLEMLKKLELSEEDHRELKEYCE--SK 88 (329)
T ss_pred ccCcHHHHHHHHHHHHHhCCCEEEeeeCCHHHhhCcccccccccccCCcCCCcHHHHHHHhCCCHHHHHHHHHHHH--Hh
Confidence 3457888888888889999999987542 2111 0 23344444322 36
Q ss_pred CcceeeccCCCHHHHHHHhhh-cCceeeCCCCCCchhhhccccccchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeC
Q 006566 161 NIPLVADIHFAPSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTN 239 (640)
Q Consensus 161 ~iPLVADIHF~~~~Al~Aa~~-v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvN 239 (640)
.++.++.. |+..-+....+. ++-+.|--+|+.+ .||++.+.+.|.||=|.+
T Consensus 89 Gi~~~stp-fd~~svd~l~~~~v~~~KIaS~~~~n--------------------------~pLL~~~A~~gkPvilSt- 140 (329)
T TIGR03569 89 GIEFLSTP-FDLESADFLEDLGVPRFKIPSGEITN--------------------------APLLKKIARFGKPVILST- 140 (329)
T ss_pred CCcEEEEe-CCHHHHHHHHhcCCCEEEECcccccC--------------------------HHHHHHHHhcCCcEEEEC-
Confidence 67888877 667767777788 9999999999976 468999999999997766
Q ss_pred CCCCcHhHHHHhCCChHHHHHHHHHHHHHHHHCCCC--cEEE
Q 006566 240 HGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFH--NFLF 279 (640)
Q Consensus 240 hGSLs~ril~ryGdtp~gMVeSAle~~~i~e~~~F~--divi 279 (640)
|-.-..=++.|.|+++ +.|-. ++++
T Consensus 141 ------------Gmatl~Ei~~Av~~i~---~~G~~~~~i~l 167 (329)
T TIGR03569 141 ------------GMATLEEIEAAVGVLR---DAGTPDSNITL 167 (329)
T ss_pred ------------CCCCHHHHHHHHHHHH---HcCCCcCcEEE
Confidence 4322456777777764 66765 3655
No 497
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=35.18 E-value=5.1e+02 Score=27.54 Aligned_cols=104 Identities=15% Similarity=0.229 Sum_probs=65.2
Q ss_pred cCCHHHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhhcCceeeCCCCCCchhhhccccccchHHHHHHHhhhHh
Q 006566 139 VQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEE 218 (640)
Q Consensus 139 vp~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~v~KVRINPGN~~d~~k~F~~~eYtdeeY~~Ele~I~~ 218 (640)
+-+.+..+|+.+|.+ +|=|-=|+|-|.=--.++ - -||++.+. .+++
T Consensus 152 iEt~~a~~n~~~I~~--------~~gvd~i~~G~~Dls~sl------g-~~~~~~~p-------------------ev~~ 197 (267)
T PRK10128 152 VESKTALDNLDEILD--------VEGIDGVFIGPADLSASL------G-YPDNAGHP-------------------EVQR 197 (267)
T ss_pred ECCHHHHHhHHHHhC--------CCCCCEEEECHHHHHHHc------C-CCCCCCCH-------------------HHHH
Confidence 455566666666654 566666777765211121 1 14555442 2456
Q ss_pred hHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEEeCChhhHHHHHHHHHH
Q 006566 219 VFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVA 298 (640)
Q Consensus 219 ~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGdtp~gMVeSAle~~~i~e~~~F~diviSmKsSn~~~mV~AyRlL~~ 298 (640)
.+..+++.||++|+++ |+-.+| | +.++-+.+.||+=++++ +|...+.++.+...+
T Consensus 198 ai~~v~~a~~~~Gk~~--G~~~~~------------~--------~~a~~~~~~G~~~v~~g---~D~~~l~~~~~~~~~ 252 (267)
T PRK10128 198 IIETSIRRIRAAGKAA--GFLAVD------------P--------DMAQKCLAWGANFVAVG---VDTMLYTDALDQRLA 252 (267)
T ss_pred HHHHHHHHHHHcCCeE--EEcCCC------------H--------HHHHHHHHcCCcEEEEC---hHHHHHHHHHHHHHH
Confidence 7888999999999998 542222 2 34455568999766554 777788888888888
Q ss_pred HHH
Q 006566 299 EMY 301 (640)
Q Consensus 299 ~m~ 301 (640)
.+.
T Consensus 253 ~~~ 255 (267)
T PRK10128 253 MFK 255 (267)
T ss_pred HHh
Confidence 764
No 498
>CHL00194 ycf39 Ycf39; Provisional
Probab=34.59 E-value=5.5e+02 Score=26.71 Aligned_cols=126 Identities=17% Similarity=0.114 Sum_probs=59.8
Q ss_pred HHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhhcCceeeCCCCCCchhhhccccc
Q 006566 124 VMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLE 203 (640)
Q Consensus 124 i~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~v~KVRINPGN~~d~~k~F~~~e 203 (640)
+.+|.+.|.+ ||..+-+.+.+..+. ..|+. .+.+|+. +|.-...|++-+|-| ||-.+......
T Consensus 17 v~~Ll~~g~~-V~~l~R~~~~~~~l~-------~~~v~-~v~~Dl~-d~~~l~~al~g~d~V-i~~~~~~~~~~------ 79 (317)
T CHL00194 17 VRQALDEGYQ-VRCLVRNLRKASFLK-------EWGAE-LVYGDLS-LPETLPPSFKGVTAI-IDASTSRPSDL------ 79 (317)
T ss_pred HHHHHHCCCe-EEEEEcChHHhhhHh-------hcCCE-EEECCCC-CHHHHHHHHCCCCEE-EECCCCCCCCc------
Confidence 4567889987 677666654443222 12332 3556775 454444555545433 44322110000
Q ss_pred cchHHHHHHHhhhHhhHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhCCChHHHHHHHHHHHHHHHHCCCCcEEE
Q 006566 204 YTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLF 279 (640)
Q Consensus 204 YtdeeY~~Ele~I~~~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryGdtp~gMVeSAle~~~i~e~~~F~divi 279 (640)
+.-++.. .+-...+++.|++.|+. |+ +..+|+.. +.|+.+|.. ++=.+.-+++++.|+.=.++
T Consensus 80 --~~~~~~~----~~~~~~l~~aa~~~gvk-r~-I~~Ss~~~---~~~~~~~~~--~~K~~~e~~l~~~~l~~til 142 (317)
T CHL00194 80 --YNAKQID----WDGKLALIEAAKAAKIK-RF-IFFSILNA---EQYPYIPLM--KLKSDIEQKLKKSGIPYTIF 142 (317)
T ss_pred --cchhhhh----HHHHHHHHHHHHHcCCC-EE-EEeccccc---cccCCChHH--HHHHHHHHHHHHcCCCeEEE
Confidence 0001111 12246789999999976 55 33455532 235555532 22222223455666654443
No 499
>COG0422 ThiC Thiamine biosynthesis protein ThiC [Coenzyme metabolism]
Probab=34.33 E-value=3.7e+02 Score=30.66 Aligned_cols=141 Identities=23% Similarity=0.299 Sum_probs=82.8
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHhhcCCCCcceeeccCCCHHHHHHHhhhcCceeeCC
Q 006566 110 TTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNP 189 (640)
Q Consensus 110 t~t~T~Dv~atv~Qi~rl~~aGceiVRvtvp~~~~A~~l~~I~~~L~~~g~~iPLVADIHF~~~~Al~Aa~~v~KVRINP 189 (640)
|+.++.|++.-|+..+--.+.|+|- +-+.---..|.+||+.+.+ .+++|+=.= =-|.++.++ .+.
T Consensus 70 tS~~~~~i~~EveK~~~A~~~GADt----vMDLStGgdl~eiR~~ii~-~s~vPvGTV--PIYqA~~~~----~~~---- 134 (432)
T COG0422 70 TSADTSDIDEEVEKAVWAIKWGADT----VMDLSTGGDLHEIREWIIR-NSPVPVGTV--PIYQALEEV----NGK---- 134 (432)
T ss_pred CCcccCCHHHHHHHHHHHHHhCcce----eEecccCCCHHHHHHHHHh-cCCCCcCCc--hHHHHHHHH----hcc----
Confidence 6778899999999999999999994 3444455678888887654 455554100 004444332 211
Q ss_pred CCCCchhhhccccccchHHHHHHHhh-hHh----------hHHHHHHHHHHcCCeEEEeeCCCCCcHhHHHHhC-CChHH
Q 006566 190 GNFADRRAQFEQLEYTDDEYQKELQH-IEE----------VFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYG-DSPRG 257 (640)
Q Consensus 190 GN~~d~~k~F~~~eYtdeeY~~Ele~-I~~----------~f~~lV~~~Ke~g~aIRIGvNhGSLs~ril~ryG-dtp~g 257 (640)
..+.|.++|-.-+++ -++ ...+.++..|+.|+.+=|=--.||+=..-|-.-+ .+|
T Consensus 135 -----------~~~~t~d~~~~~v~~qa~~GVdfmTIHaGV~~~~~~~~~~~~R~~giVSRGGsi~a~Wml~~~~ENp-- 201 (432)
T COG0422 135 -----------VEDLTEDDFFDTVEKQAEQGVDFMTIHAGVLLEYVPRTKRSGRVTGIVSRGGSIMAAWMLHNHKENP-- 201 (432)
T ss_pred -----------hhhCCHHHHHHHHHHHHHhCCcEEEeehhhhHHHHHHHHhcCceeeeeccchHHHHHHHHHcCCcCc--
Confidence 123444554443332 111 3456777788888888776667776444444433 244
Q ss_pred HHHHHHHHHHHHHHCCCCcEEEEE
Q 006566 258 MVESAFEFARICRKLDFHNFLFSM 281 (640)
Q Consensus 258 MVeSAle~~~i~e~~~F~diviSm 281 (640)
+-+-=-+.++||++ ||++||+
T Consensus 202 ly~~fd~lleI~k~---yDvtlSL 222 (432)
T COG0422 202 LYEHFDELLEIFKE---YDVTLSL 222 (432)
T ss_pred hhhhHHHHHHHHHH---hCeeeec
Confidence 33444445556655 4567776
No 500
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=34.27 E-value=4.7e+02 Score=28.09 Aligned_cols=53 Identities=19% Similarity=0.182 Sum_probs=36.7
Q ss_pred HHHHHHHcCCeEEEeeCCCCCcHhHHH-HhC--CChHHHHHHHHHHHHHHHHCCCCcEEEE
Q 006566 223 LVEKCKKYGRAVRIGTNHGSLSDRIMS-YYG--DSPRGMVESAFEFARICRKLDFHNFLFS 280 (640)
Q Consensus 223 lV~~~Ke~g~aIRIGvNhGSLs~ril~-ryG--dtp~gMVeSAle~~~i~e~~~F~diviS 280 (640)
.++..|+.|+.+||.+--=|.++++++ ..+ -|++ ...+.++++.+.|+. +...
T Consensus 119 ~L~~l~~aG~~~~v~iG~ES~~d~~L~~~inKg~t~~----~~~~ai~~~~~~Gi~-v~~~ 174 (313)
T TIGR01210 119 KLEELRKIGVNVEVAVGLETANDRIREKSINKGSTFE----DFIRAAELARKYGAG-VKAY 174 (313)
T ss_pred HHHHHHHcCCCEEEEEecCcCCHHHHHHhhCCCCCHH----HHHHHHHHHHHcCCc-EEEE
Confidence 456677789876777766788899996 565 3553 445667788899996 4433
Done!