Query 006567
Match_columns 640
No_of_seqs 312 out of 3696
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 03:02:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006567.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006567hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kg2_A Glutamate receptor 2; I 100.0 1.2E-70 4.1E-75 629.8 49.1 542 30-637 1-578 (823)
2 3o21_A Glutamate receptor 3; p 100.0 6E-51 2E-55 423.8 41.0 368 29-423 3-380 (389)
3 4gpa_A Glutamate receptor 4; P 100.0 1.9E-49 6.6E-54 414.2 42.9 372 28-425 2-380 (389)
4 3om0_A Glutamate receptor, ion 100.0 5.8E-49 2E-53 410.6 36.1 369 30-423 3-381 (393)
5 3h6g_A Glutamate receptor, ion 100.0 1.7E-48 5.8E-53 407.5 37.3 369 29-423 2-383 (395)
6 3hsy_A Glutamate receptor 2; l 100.0 1.4E-48 4.7E-53 404.7 36.1 362 31-421 2-372 (376)
7 4f11_A Gamma-aminobutyric acid 100.0 1.6E-48 5.4E-53 412.9 36.1 386 26-452 9-422 (433)
8 3saj_A Glutamate receptor 1; r 100.0 1.4E-47 4.8E-52 398.5 35.9 364 27-424 6-378 (384)
9 1jdp_A NPR-C, atrial natriuret 100.0 1E-46 3.6E-51 399.7 40.1 358 28-419 6-397 (441)
10 3qek_A NMDA glutamate receptor 100.0 8.1E-47 2.8E-51 393.1 34.3 338 28-416 2-369 (384)
11 1dp4_A Atrial natriuretic pept 100.0 1.3E-46 4.5E-51 398.6 35.3 358 30-418 1-398 (435)
12 2e4u_A Metabotropic glutamate 100.0 9.5E-46 3.3E-50 402.5 41.2 389 27-460 10-486 (555)
13 3sm9_A Mglur3, metabotropic gl 100.0 6.6E-46 2.3E-50 395.1 35.8 366 27-415 9-462 (479)
14 3ks9_A Mglur1, metabotropic gl 100.0 3.7E-45 1.3E-49 391.0 36.9 370 26-416 12-475 (496)
15 3mq4_A Mglur7, metabotropic gl 100.0 1.2E-45 4.1E-50 394.2 25.2 371 26-415 11-467 (481)
16 3qel_B Glutamate [NMDA] recept 100.0 4.9E-41 1.7E-45 344.5 25.5 339 29-421 2-355 (364)
17 3i45_A Twin-arginine transloca 100.0 1.2E-38 4E-43 332.0 33.3 355 29-423 3-366 (387)
18 3h5l_A Putative branched-chain 100.0 8.9E-39 3E-43 336.6 26.4 353 27-415 10-395 (419)
19 4f06_A Extracellular ligand-bi 100.0 1.5E-37 5.3E-42 321.2 30.8 347 29-415 3-361 (371)
20 3ipc_A ABC transporter, substr 100.0 2.2E-37 7.5E-42 318.7 30.2 344 30-417 1-352 (356)
21 3td9_A Branched chain amino ac 100.0 4E-37 1.4E-41 318.0 31.3 341 28-417 13-363 (366)
22 3hut_A Putative branched-chain 100.0 1.8E-36 6.3E-41 312.1 31.4 345 29-417 2-354 (358)
23 1usg_A Leucine-specific bindin 100.0 1.5E-36 5.1E-41 311.3 30.4 339 30-411 1-345 (346)
24 3i09_A Periplasmic branched-ch 100.0 5.3E-36 1.8E-40 310.6 32.8 334 29-407 2-342 (375)
25 3lkb_A Probable branched-chain 100.0 2.1E-36 7.3E-41 315.6 28.4 351 28-419 4-377 (392)
26 4gnr_A ABC transporter substra 100.0 2.3E-36 7.8E-41 310.6 27.4 339 27-414 3-351 (353)
27 3n0w_A ABC branched chain amin 100.0 8.2E-36 2.8E-40 309.6 31.6 336 28-407 3-346 (379)
28 3eaf_A ABC transporter, substr 100.0 1.2E-35 4E-40 309.7 31.6 349 29-418 2-373 (391)
29 4evq_A Putative ABC transporte 100.0 1.2E-35 4E-40 308.2 30.5 344 28-416 13-363 (375)
30 4eyg_A Twin-arginine transloca 100.0 2.6E-35 8.8E-40 304.7 31.8 346 28-416 3-359 (368)
31 3n0x_A Possible substrate bind 100.0 7.4E-36 2.5E-40 309.2 26.3 330 30-405 3-346 (374)
32 3lop_A Substrate binding perip 100.0 1.7E-35 6E-40 305.4 28.3 339 29-409 3-354 (364)
33 3sg0_A Extracellular ligand-bi 100.0 9.3E-35 3.2E-39 302.6 22.4 343 28-411 24-385 (386)
34 1pea_A Amidase operon; gene re 100.0 2.5E-32 8.6E-37 283.9 33.5 347 28-414 4-357 (385)
35 3snr_A Extracellular ligand-bi 100.0 8E-33 2.7E-37 285.3 26.3 341 28-411 4-361 (362)
36 2h4a_A YRAM (HI1655); perplasm 99.9 1.5E-26 5E-31 231.6 22.4 307 33-411 2-317 (325)
37 3ckm_A YRAM (HI1655), LPOA; pe 99.9 2.1E-26 7.1E-31 233.2 20.6 312 32-413 3-321 (327)
38 1yae_A Glutamate receptor, ion 99.5 2.9E-14 9.9E-19 142.9 7.7 119 463-586 11-142 (312)
39 4gvo_A LMO2349 protein; struct 99.4 9.7E-14 3.3E-18 133.6 6.5 111 463-585 7-119 (243)
40 1pb7_A N-methyl-D-aspartate re 99.4 1.1E-13 3.8E-18 137.1 6.7 104 465-573 41-154 (292)
41 4h5g_A Amino acid ABC superfam 99.4 1.3E-13 4.6E-18 132.7 6.7 98 465-573 12-111 (243)
42 3g3k_A Glutamate receptor, ion 99.4 2.1E-13 7.3E-18 132.6 6.8 107 464-573 3-119 (259)
43 2a5s_A N-methyl-D-aspartate re 99.4 6.9E-13 2.4E-17 130.8 8.1 111 461-573 25-142 (284)
44 2rc8_A Glutamate [NMDA] recept 99.4 4.4E-13 1.5E-17 133.0 6.5 83 489-573 67-153 (294)
45 2v3u_A Glutamate receptor delt 99.3 2E-12 6.9E-17 126.0 9.1 105 464-573 2-115 (265)
46 1mqi_A Glutamate receptor 2; G 99.3 1E-12 3.5E-17 128.1 6.6 105 464-573 3-119 (263)
47 3i6v_A Periplasmic His/Glu/Gln 99.3 1.4E-12 5E-17 124.4 6.1 98 464-573 4-101 (232)
48 3kzg_A Arginine 3RD transport 99.3 9.6E-12 3.3E-16 119.0 9.3 106 465-583 3-109 (237)
49 3tql_A Arginine-binding protei 99.2 2.1E-11 7.3E-16 115.5 9.2 107 465-583 2-108 (227)
50 4f3p_A Glutamine-binding perip 99.2 2.5E-11 8.5E-16 117.1 9.6 110 463-585 22-131 (249)
51 3kbr_A Cyclohexadienyl dehydra 99.2 9.9E-12 3.4E-16 119.0 6.6 98 464-573 14-111 (239)
52 3k4u_A Binding component of AB 99.2 1.4E-11 4.8E-16 118.5 7.7 108 464-583 4-112 (245)
53 4dz1_A DALS D-alanine transpor 99.2 3.3E-11 1.1E-15 117.0 9.1 110 463-584 27-137 (259)
54 3hv1_A Polar amino acid ABC up 99.2 2.5E-11 8.6E-16 118.4 7.4 109 464-585 20-128 (268)
55 1lst_A Lysine, arginine, ornit 99.2 2.6E-11 9E-16 116.0 7.1 98 464-573 3-100 (239)
56 3mpk_A Virulence sensor protei 99.2 8.6E-11 2.9E-15 114.6 10.6 108 464-583 31-138 (267)
57 2iee_A ORF2, probable ABC tran 99.2 2.3E-11 7.7E-16 119.1 6.1 110 464-585 20-133 (271)
58 3h7m_A Sensor protein; histidi 99.1 9.7E-11 3.3E-15 111.5 9.4 110 464-586 10-119 (234)
59 1ii5_A SLR1257 protein; membra 99.1 7.7E-11 2.6E-15 112.1 8.5 109 464-584 3-116 (233)
60 4eq9_A ABC transporter substra 99.1 5E-11 1.7E-15 114.5 7.0 109 464-585 7-116 (246)
61 1wdn_A GLNBP, glutamine bindin 99.1 1.1E-10 3.7E-15 110.4 8.8 107 465-584 3-109 (226)
62 3del_B Arginine binding protei 99.1 8.8E-11 3E-15 112.6 7.8 108 464-585 10-119 (242)
63 2y7i_A STM4351; arginine-bindi 99.1 1.1E-10 3.9E-15 110.6 8.2 98 464-573 5-103 (229)
64 2q88_A EHUB, putative ABC tran 99.1 1.2E-10 4.2E-15 112.7 7.5 97 464-573 12-109 (257)
65 2pvu_A ARTJ; basic amino acid 99.0 9.2E-10 3.1E-14 107.6 8.4 108 463-584 40-147 (272)
66 2pyy_A Ionotropic glutamate re 98.9 7.4E-10 2.5E-14 104.8 6.8 96 465-573 3-98 (228)
67 2vha_A Periplasmic binding tra 98.9 2.6E-09 8.9E-14 105.2 8.3 108 464-584 16-130 (287)
68 4i62_A Amino acid ABC transpor 98.9 2E-09 6.9E-14 104.7 7.0 108 464-583 38-149 (269)
69 3qax_A Probable ABC transporte 98.9 2.2E-09 7.6E-14 104.3 6.9 109 464-585 30-140 (268)
70 2yln_A Putative ABC transporte 98.9 2.1E-09 7E-14 105.7 6.4 98 464-573 56-154 (283)
71 1xt8_A Putative amino-acid tra 98.9 2.9E-09 9.8E-14 105.2 7.4 107 464-583 43-152 (292)
72 2yjp_A Putative ABC transporte 98.8 3.5E-09 1.2E-13 104.6 6.9 107 465-584 55-164 (291)
73 2v25_A Major cell-binding fact 98.8 6.1E-09 2.1E-13 100.6 6.9 98 465-573 38-138 (259)
74 3ksm_A ABC-type sugar transpor 98.4 1.7E-05 5.8E-10 77.0 18.4 209 32-259 1-221 (276)
75 2h3h_A Sugar ABC transporter, 98.3 2.9E-05 1E-09 77.0 20.0 208 32-259 2-216 (313)
76 3brs_A Periplasmic binding pro 98.2 6.8E-05 2.3E-09 73.3 19.6 209 31-258 5-223 (289)
77 3brq_A HTH-type transcriptiona 98.2 2.4E-05 8.3E-10 76.8 16.4 211 29-259 17-236 (296)
78 3d02_A Putative LACI-type tran 98.2 0.00016 5.6E-09 71.1 20.7 210 30-258 3-222 (303)
79 2qu7_A Putative transcriptiona 98.2 1.8E-05 6E-10 77.5 13.5 201 29-251 6-214 (288)
80 1dbq_A Purine repressor; trans 98.2 7.1E-05 2.4E-09 73.1 17.9 202 30-251 6-214 (289)
81 3gbv_A Putative LACI-family tr 98.2 5.5E-05 1.9E-09 74.5 17.1 211 29-259 6-232 (304)
82 2rjo_A Twin-arginine transloca 98.2 0.00012 4E-09 73.3 19.6 205 30-249 4-222 (332)
83 3o1i_D Periplasmic protein TOR 98.1 5.7E-05 2E-09 74.4 16.1 206 29-249 3-218 (304)
84 3rot_A ABC sugar transporter, 98.1 7.4E-05 2.5E-09 73.4 16.7 204 31-250 3-214 (297)
85 2qh8_A Uncharacterized protein 98.1 0.00014 4.7E-09 71.7 18.7 187 30-232 7-202 (302)
86 1tjy_A Sugar transport protein 98.1 0.00027 9.1E-09 70.1 20.5 205 33-258 5-221 (316)
87 2fvy_A D-galactose-binding per 98.1 0.00021 7.1E-09 70.5 19.4 204 32-247 3-226 (309)
88 2x7x_A Sensor protein; transfe 98.1 0.00016 5.5E-09 72.1 18.4 209 30-258 5-221 (325)
89 3lft_A Uncharacterized protein 98.1 0.0004 1.4E-08 68.1 21.0 199 31-248 2-210 (295)
90 2fn9_A Ribose ABC transporter, 98.0 0.00021 7.3E-09 69.8 18.4 197 32-248 3-215 (290)
91 3l49_A ABC sugar (ribose) tran 98.0 0.00014 4.9E-09 71.1 17.1 208 30-258 4-223 (291)
92 3g1w_A Sugar ABC transporter; 98.0 0.00041 1.4E-08 68.3 20.3 210 32-259 5-221 (305)
93 3lkv_A Uncharacterized conserv 98.0 0.0003 1E-08 69.2 18.9 204 28-247 5-220 (302)
94 3c3k_A Alanine racemase; struc 98.0 0.00033 1.1E-08 68.2 19.1 199 30-252 7-212 (285)
95 3l6u_A ABC-type sugar transpor 98.0 0.00036 1.2E-08 68.2 19.2 201 29-249 6-220 (293)
96 2fep_A Catabolite control prot 98.0 0.00019 6.5E-09 70.2 16.9 211 27-257 12-229 (289)
97 3o74_A Fructose transport syst 98.0 0.00026 9.1E-09 68.3 17.8 207 32-259 3-215 (272)
98 2ioy_A Periplasmic sugar-bindi 98.0 0.00078 2.7E-08 65.4 21.1 204 33-258 3-215 (283)
99 2h0a_A TTHA0807, transcription 98.0 5.6E-05 1.9E-09 73.3 12.5 202 33-256 1-212 (276)
100 2iks_A DNA-binding transcripti 98.0 0.00031 1.1E-08 68.7 17.8 209 30-259 19-233 (293)
101 3h75_A Periplasmic sugar-bindi 97.9 0.00088 3E-08 67.4 20.9 214 31-258 3-240 (350)
102 2vk2_A YTFQ, ABC transporter p 97.9 0.00051 1.8E-08 67.6 18.6 210 31-257 2-225 (306)
103 3k4h_A Putative transcriptiona 97.9 0.0002 6.9E-09 70.0 15.0 210 29-257 6-226 (292)
104 3dbi_A Sugar-binding transcrip 97.9 0.0003 1E-08 70.5 16.6 211 30-259 60-278 (338)
105 2o20_A Catabolite control prot 97.9 0.00025 8.5E-09 70.9 15.7 208 30-257 62-273 (332)
106 1jx6_A LUXP protein; protein-l 97.9 0.00045 1.5E-08 69.3 17.6 208 28-248 40-258 (342)
107 3d8u_A PURR transcriptional re 97.9 0.00056 1.9E-08 66.1 17.7 201 31-252 3-209 (275)
108 8abp_A L-arabinose-binding pro 97.9 0.00081 2.8E-08 66.1 19.1 214 31-259 2-232 (306)
109 3clk_A Transcription regulator 97.9 0.00015 5E-09 71.0 13.4 202 30-251 7-212 (290)
110 3bbl_A Regulatory protein of L 97.8 0.00025 8.7E-09 69.1 14.8 208 31-259 4-224 (287)
111 2rgy_A Transcriptional regulat 97.8 0.00017 5.8E-09 70.5 13.4 208 30-257 7-223 (290)
112 1qpz_A PURA, protein (purine n 97.8 0.00081 2.8E-08 67.3 17.9 204 30-252 57-266 (340)
113 3gv0_A Transcriptional regulat 97.8 0.00059 2E-08 66.5 16.4 202 30-252 7-216 (288)
114 2hsg_A Glucose-resistance amyl 97.8 0.00032 1.1E-08 70.1 14.5 210 29-258 58-274 (332)
115 3jy6_A Transcriptional regulat 97.7 0.0014 4.7E-08 63.4 18.3 205 29-257 5-214 (276)
116 3egc_A Putative ribose operon 97.7 0.00027 9.2E-09 69.1 12.8 210 29-258 6-221 (291)
117 3m9w_A D-xylose-binding peripl 97.7 0.0019 6.5E-08 63.7 19.1 207 31-257 2-220 (313)
118 3gyb_A Transcriptional regulat 97.7 0.00015 5.2E-09 70.4 10.8 204 30-258 4-211 (280)
119 3ctp_A Periplasmic binding pro 97.7 0.00035 1.2E-08 69.7 13.1 201 30-256 59-263 (330)
120 3k9c_A Transcriptional regulat 97.7 0.002 6.8E-08 62.8 18.1 206 29-257 10-219 (289)
121 3tb6_A Arabinose metabolism tr 97.6 0.00078 2.7E-08 65.9 14.7 209 32-257 16-234 (298)
122 3hcw_A Maltose operon transcri 97.6 0.0032 1.1E-07 61.5 18.9 209 29-258 5-227 (295)
123 3g85_A Transcriptional regulat 97.6 0.0006 2E-08 66.5 13.3 202 29-252 9-216 (289)
124 3qk7_A Transcriptional regulat 97.5 0.00084 2.9E-08 65.7 13.4 208 30-259 5-223 (294)
125 3kke_A LACI family transcripti 97.5 0.0014 4.7E-08 64.4 14.9 207 29-257 13-231 (303)
126 3kjx_A Transcriptional regulat 97.5 0.0012 4.1E-08 66.2 14.7 207 30-256 67-279 (344)
127 3bil_A Probable LACI-family tr 97.5 0.0033 1.1E-07 63.1 17.2 208 30-258 65-276 (348)
128 2dri_A D-ribose-binding protei 97.5 0.01 3.5E-07 57.0 20.1 204 33-258 3-214 (271)
129 2ozz_A Hypothetical protein YH 97.5 7E-05 2.4E-09 69.2 4.1 76 487-573 27-108 (231)
130 3cs3_A Sugar-binding transcrip 97.4 0.0063 2.2E-07 58.7 17.9 198 29-257 6-210 (277)
131 3e3m_A Transcriptional regulat 97.4 0.0076 2.6E-07 60.6 18.8 208 30-256 69-282 (355)
132 3e61_A Putative transcriptiona 97.4 0.0016 5.5E-08 62.9 13.2 199 30-257 7-210 (277)
133 1byk_A Protein (trehalose oper 97.4 0.0096 3.3E-07 56.5 18.4 197 33-259 4-205 (255)
134 1gud_A ALBP, D-allose-binding 97.4 0.021 7.3E-07 55.3 21.0 212 33-259 3-227 (288)
135 4fe7_A Xylose operon regulator 97.3 0.0063 2.2E-07 62.6 17.6 211 28-259 22-239 (412)
136 3hs3_A Ribose operon repressor 97.3 0.0041 1.4E-07 60.0 15.3 196 29-256 8-210 (277)
137 3huu_A Transcription regulator 97.3 0.005 1.7E-07 60.4 15.6 204 30-258 21-237 (305)
138 3h5o_A Transcriptional regulat 97.3 0.008 2.7E-07 60.0 17.2 201 30-254 61-269 (339)
139 3uug_A Multiple sugar-binding 97.3 0.0078 2.7E-07 59.7 17.1 205 31-251 3-231 (330)
140 3jvd_A Transcriptional regulat 97.2 0.017 6E-07 57.3 19.0 199 30-258 63-266 (333)
141 2fqx_A Membrane lipoprotein TM 97.2 0.025 8.7E-07 55.7 19.7 207 30-257 3-220 (318)
142 1jye_A Lactose operon represso 97.1 0.024 8.1E-07 56.8 18.5 203 30-256 60-270 (349)
143 3s99_A Basic membrane lipoprot 97.1 0.041 1.4E-06 54.9 19.6 201 26-248 21-230 (356)
144 2hqb_A Transcriptional activat 97.1 0.11 3.9E-06 50.3 22.6 196 30-247 4-204 (296)
145 3miz_A Putative transcriptiona 96.8 0.0022 7.5E-08 62.8 7.5 201 30-251 12-224 (301)
146 3h5t_A Transcriptional regulat 96.2 0.02 6.9E-07 57.7 10.7 206 30-252 67-296 (366)
147 3qi7_A Putative transcriptiona 96.1 0.17 6E-06 49.9 16.2 215 29-249 10-250 (371)
148 3ixl_A Amdase, arylmalonate de 95.8 0.13 4.6E-06 47.9 13.3 127 87-241 57-198 (240)
149 3n5l_A Binding protein compone 94.3 0.037 1.3E-06 54.2 5.0 99 465-582 4-110 (310)
150 3p7i_A PHND, subunit of alkylp 93.4 0.094 3.2E-06 51.6 5.9 101 463-582 12-120 (321)
151 2xed_A Putative maleate isomer 91.3 2.2 7.4E-05 40.5 12.4 86 153-241 135-226 (273)
152 3s99_A Basic membrane lipoprot 90.3 3.1 0.00011 41.2 12.9 89 32-129 150-238 (356)
153 2fqx_A Membrane lipoprotein TM 90.2 4.7 0.00016 39.2 14.1 126 33-165 131-264 (318)
154 2nr1_A NR1 M2, M2; receptor, s 89.6 0.13 4.3E-06 28.4 1.1 16 621-636 7-22 (27)
155 3ix1_A N-formyl-4-amino-5-amin 88.6 0.5 1.7E-05 45.7 5.6 79 487-573 14-96 (302)
156 3uif_A Sulfonate ABC transport 88.5 0.19 6.4E-06 50.1 2.5 80 497-583 35-118 (348)
157 2eq5_A 228AA long hypothetical 86.4 4.7 0.00016 36.9 10.7 165 31-235 6-186 (228)
158 2hqb_A Transcriptional activat 86.3 8.7 0.0003 36.7 13.0 121 33-166 128-248 (296)
159 3qsl_A Putative exported prote 85.7 2.3 7.9E-05 41.7 8.8 64 502-573 59-126 (346)
160 2dgd_A 223AA long hypothetical 84.5 7.4 0.00025 35.4 11.0 87 152-241 96-189 (223)
161 2q5c_A NTRC family transcripti 83.7 23 0.00078 31.4 18.1 158 32-249 5-162 (196)
162 3bfj_A 1,3-propanediol oxidore 83.0 6.2 0.00021 39.6 10.5 89 153-243 22-114 (387)
163 3ox4_A Alcohol dehydrogenase 2 81.0 2.8 9.7E-05 42.0 7.1 90 153-244 20-111 (383)
164 2l82_A Designed protein OR32; 80.7 17 0.00059 27.8 9.7 97 141-248 4-104 (162)
165 4ddd_A Immunogenic protein; ss 78.9 3.2 0.00011 40.6 6.6 99 465-584 32-146 (327)
166 1jfl_A Aspartate racemase; alp 77.0 7.5 0.00026 35.5 8.2 38 87-125 65-102 (228)
167 3ksx_A Nitrate transport prote 76.4 5.4 0.00019 38.7 7.5 65 501-573 51-121 (324)
168 1rrm_A Lactaldehyde reductase; 74.0 5.7 0.00019 39.8 7.0 90 153-244 20-111 (386)
169 2zsk_A PH1733, 226AA long hypo 73.1 16 0.00054 33.3 9.3 77 91-196 68-144 (226)
170 2x26_A Periplasmic aliphatic s 72.8 5.4 0.00018 38.3 6.3 65 500-573 24-95 (308)
171 1vlj_A NADH-dependent butanol 72.5 11 0.00037 38.0 8.7 89 153-243 32-123 (407)
172 3jv9_A OXYR, transcriptional r 71.7 12 0.00042 33.0 8.2 83 465-573 4-86 (219)
173 1o2d_A Alcohol dehydrogenase, 71.0 15 0.00053 36.4 9.3 88 153-243 30-120 (371)
174 1i6a_A OXYR, hydrogen peroxide 70.8 14 0.00049 32.8 8.5 83 465-573 5-87 (219)
175 3un6_A Hypothetical protein sa 70.7 2.8 9.5E-05 41.2 3.8 63 503-573 78-143 (341)
176 3oxn_A Putative transcriptiona 70.2 16 0.00053 33.1 8.7 84 464-573 18-101 (241)
177 3m9w_A D-xylose-binding peripl 70.2 13 0.00045 35.6 8.5 80 165-249 3-85 (313)
178 3lr1_A Tungstate ABC transport 69.4 3.6 0.00012 37.9 3.9 75 490-573 17-94 (236)
179 3g1w_A Sugar ABC transporter; 69.2 9.5 0.00033 36.3 7.2 81 165-249 5-88 (305)
180 3gbv_A Putative LACI-family tr 68.4 14 0.00047 35.1 8.2 86 162-249 6-96 (304)
181 2ql3_A Probable transcriptiona 67.7 19 0.00066 31.5 8.6 83 465-573 5-87 (209)
182 3uhj_A Probable glycerol dehyd 67.0 6.8 0.00023 39.2 5.7 83 153-241 42-126 (387)
183 3muq_A Uncharacterized conserv 66.6 4.4 0.00015 37.4 3.9 74 491-573 18-94 (237)
184 3dbi_A Sugar-binding transcrip 66.3 18 0.00062 35.0 8.7 88 156-248 53-144 (338)
185 3ho7_A OXYR; beta-alpha-barrel 65.8 16 0.00055 32.6 7.8 83 465-573 11-93 (232)
186 8abp_A L-arabinose-binding pro 65.5 17 0.00059 34.5 8.2 78 166-249 4-84 (306)
187 4ab5_A Transcriptional regulat 64.4 12 0.0004 33.3 6.4 84 464-573 7-90 (222)
188 1mkz_A Molybdenum cofactor bio 63.3 29 0.001 29.9 8.4 63 165-231 11-77 (172)
189 2gzm_A Glutamate racemase; enz 60.4 35 0.0012 31.9 9.0 39 88-126 57-95 (267)
190 2k1e_A Water soluble analogue 60.1 9.5 0.00032 29.7 4.2 37 595-635 17-53 (103)
191 3uug_A Multiple sugar-binding 59.6 23 0.00077 34.1 7.9 80 165-249 4-86 (330)
192 3l6u_A ABC-type sugar transpor 59.3 23 0.0008 33.2 7.9 82 163-249 7-91 (293)
193 3k9c_A Transcriptional regulat 58.6 64 0.0022 30.1 10.9 117 33-160 128-252 (289)
194 3tb6_A Arabinose metabolism tr 58.2 32 0.0011 32.2 8.7 80 165-249 16-101 (298)
195 3l49_A ABC sugar (ribose) tran 58.0 26 0.00088 32.9 7.9 80 165-249 6-88 (291)
196 2y7p_A LYSR-type regulatory pr 57.7 19 0.00066 32.1 6.6 84 464-573 7-90 (218)
197 1i4n_A Indole-3-glycerol phosp 57.1 49 0.0017 30.5 9.1 86 153-249 64-152 (251)
198 3jy6_A Transcriptional regulat 57.1 27 0.00093 32.5 7.8 79 164-249 7-87 (276)
199 2pju_A Propionate catabolism o 57.0 24 0.00082 32.1 6.9 162 31-249 12-174 (225)
200 3qvl_A Putative hydantoin race 56.7 64 0.0022 29.6 9.9 84 32-125 2-96 (245)
201 3ce9_A Glycerol dehydrogenase; 56.7 22 0.00076 34.9 7.3 109 139-260 12-122 (354)
202 3h75_A Periplasmic sugar-bindi 56.6 21 0.00072 34.8 7.2 81 164-249 3-88 (350)
203 4dik_A Flavoprotein; TM0755, e 55.9 42 0.0014 33.7 9.2 93 164-263 265-365 (410)
204 3rot_A ABC sugar transporter, 55.8 16 0.00056 34.5 6.1 81 166-249 5-88 (297)
205 3d02_A Putative LACI-type tran 55.7 25 0.00087 33.2 7.4 80 165-248 5-87 (303)
206 1tjy_A Sugar transport protein 54.9 16 0.00055 35.1 5.9 81 165-249 4-87 (316)
207 1atg_A MODA, periplasmic molyb 54.9 9 0.00031 34.4 3.9 72 493-573 13-90 (231)
208 4a8p_A Putrescine carbamoyltra 54.3 1.6E+02 0.0055 28.6 13.1 134 32-199 42-184 (355)
209 2l69_A Rossmann 2X3 fold prote 54.2 64 0.0022 23.9 7.8 46 147-195 59-104 (134)
210 4a8t_A Putrescine carbamoyltra 54.1 1.4E+02 0.0049 28.8 12.2 132 32-198 64-205 (339)
211 3tsm_A IGPS, indole-3-glycerol 53.8 1E+02 0.0035 28.7 10.9 87 153-249 82-171 (272)
212 1jq5_A Glycerol dehydrogenase; 53.6 23 0.00077 35.1 6.8 108 139-259 10-119 (370)
213 1twy_A ABC transporter, peripl 53.6 22 0.00075 33.2 6.5 71 493-573 41-113 (290)
214 3h5o_A Transcriptional regulat 53.4 38 0.0013 32.7 8.4 84 159-248 57-142 (339)
215 2dwu_A Glutamate racemase; iso 52.7 1E+02 0.0034 28.9 10.8 39 87-125 60-98 (276)
216 1ixc_A CBNR, LYSR-type regulat 52.6 45 0.0015 31.1 8.6 83 465-573 91-173 (294)
217 1jye_A Lactose operon represso 52.3 32 0.0011 33.5 7.7 69 159-231 56-126 (349)
218 3hl0_A Maleylacetate reductase 51.6 21 0.00071 35.1 6.0 97 153-260 23-121 (353)
219 3ksm_A ABC-type sugar transpor 51.5 23 0.00077 32.9 6.2 81 166-249 2-86 (276)
220 2oho_A Glutamate racemase; iso 51.4 41 0.0014 31.5 7.9 38 88-125 66-103 (273)
221 3k4h_A Putative transcriptiona 51.2 26 0.00089 32.9 6.6 82 162-249 6-94 (292)
222 3s81_A Putative aspartate race 51.1 22 0.00076 33.3 5.9 40 86-126 89-128 (268)
223 3p6l_A Sugar phosphate isomera 50.8 66 0.0023 29.5 9.3 94 152-248 24-129 (262)
224 3o74_A Fructose transport syst 50.5 19 0.00065 33.4 5.5 80 165-249 3-84 (272)
225 2h9b_A HTH-type transcriptiona 50.4 52 0.0018 31.1 8.8 70 492-573 103-172 (312)
226 2fn9_A Ribose ABC transporter, 50.1 38 0.0013 31.6 7.6 79 165-248 3-84 (290)
227 3huu_A Transcription regulator 49.4 21 0.00071 34.0 5.6 88 156-249 14-108 (305)
228 3brq_A HTH-type transcriptiona 49.3 50 0.0017 30.8 8.4 84 159-248 14-102 (296)
229 1ccw_A Protein (glutamate muta 49.2 91 0.0031 25.5 8.8 85 166-259 5-93 (137)
230 2yxb_A Coenzyme B12-dependent 49.1 1.2E+02 0.0041 25.6 10.0 85 165-258 19-107 (161)
231 3kke_A LACI family transcripti 48.9 33 0.0011 32.4 7.0 88 156-249 7-96 (303)
232 2jfq_A Glutamate racemase; cel 48.2 87 0.003 29.5 9.6 40 87-126 75-114 (286)
233 2h3h_A Sugar ABC transporter, 48.1 35 0.0012 32.4 7.1 79 166-248 3-83 (313)
234 3rfq_A Pterin-4-alpha-carbinol 48.0 49 0.0017 28.9 7.1 63 165-231 31-97 (185)
235 1y5e_A Molybdenum cofactor bio 48.0 69 0.0024 27.4 8.2 65 163-231 12-80 (169)
236 2hxr_A HTH-type transcriptiona 47.8 64 0.0022 28.7 8.6 83 465-573 30-112 (238)
237 3e3m_A Transcriptional regulat 47.4 45 0.0015 32.4 7.9 85 159-249 65-151 (355)
238 3jzd_A Iron-containing alcohol 46.9 21 0.00071 35.2 5.1 97 153-260 25-123 (358)
239 3ist_A Glutamate racemase; str 46.9 58 0.002 30.4 8.0 39 87-125 58-96 (269)
240 2ih3_C Voltage-gated potassium 46.4 24 0.00084 28.4 4.7 35 597-635 40-74 (122)
241 2x7q_A Ca3427, possible thiami 46.4 15 0.00053 35.3 4.2 65 501-573 38-109 (321)
242 2qh8_A Uncharacterized protein 46.2 1E+02 0.0034 29.0 10.0 112 32-160 141-255 (302)
243 2pjk_A 178AA long hypothetical 46.1 73 0.0025 27.6 8.0 66 162-231 13-89 (178)
244 3fzv_A Probable transcriptiona 46.0 48 0.0016 31.1 7.7 84 464-573 94-178 (306)
245 3kn3_A Putative periplasmic pr 45.9 13 0.00046 34.1 3.3 74 491-573 18-94 (242)
246 3lft_A Uncharacterized protein 45.7 1.5E+02 0.0052 27.5 11.2 112 32-160 134-248 (295)
247 1jx6_A LUXP protein; protein-l 45.7 42 0.0014 32.4 7.3 82 165-248 44-129 (342)
248 2is8_A Molybdopterin biosynthe 45.6 66 0.0022 27.4 7.6 62 166-231 3-70 (164)
249 3l4e_A Uncharacterized peptida 44.9 71 0.0024 28.4 7.9 97 152-259 15-120 (206)
250 2a9h_A Voltage-gated potassium 44.8 26 0.00088 29.7 4.7 35 597-635 63-97 (155)
251 3gyb_A Transcriptional regulat 44.8 47 0.0016 30.8 7.3 116 33-160 120-243 (280)
252 2h98_A HTH-type transcriptiona 44.6 70 0.0024 30.3 8.6 70 492-573 103-172 (313)
253 4es6_A Uroporphyrinogen-III sy 44.4 20 0.00067 33.3 4.4 88 149-245 113-206 (254)
254 4a29_A Engineered retro-aldol 43.3 1.2E+02 0.004 28.0 9.0 84 155-249 69-155 (258)
255 4exl_A PBP 1, phosphate-bindin 43.3 46 0.0016 31.0 6.8 71 493-573 17-91 (265)
256 2fvy_A D-galactose-binding per 42.8 62 0.0021 30.4 7.9 79 165-248 3-85 (309)
257 3onm_A Transcriptional regulat 42.4 56 0.0019 29.2 7.2 81 465-573 27-107 (238)
258 4ep1_A Otcase, ornithine carba 42.3 2E+02 0.007 27.7 11.1 133 32-198 71-209 (340)
259 2fep_A Catabolite control prot 42.1 56 0.0019 30.5 7.4 78 165-248 17-96 (289)
260 2fyi_A HTH-type transcriptiona 41.8 72 0.0025 28.2 7.8 84 465-573 14-97 (228)
261 3qk7_A Transcriptional regulat 41.7 42 0.0014 31.5 6.4 80 163-249 5-90 (294)
262 2f5x_A BUGD; periplasmic bindi 41.6 29 0.00099 33.4 5.2 91 465-574 17-122 (312)
263 3fni_A Putative diflavin flavo 41.5 1.2E+02 0.0041 25.4 8.7 85 165-258 5-95 (159)
264 3bil_A Probable LACI-family tr 41.2 43 0.0015 32.5 6.6 79 164-248 66-146 (348)
265 1zbm_A Hypothetical protein AF 41.2 29 0.001 32.4 5.2 50 523-572 45-97 (280)
266 2jfn_A Glutamate racemase; cel 41.0 1.2E+02 0.004 28.5 9.3 36 91-126 78-114 (285)
267 2g29_A Nitrate transport prote 40.7 17 0.00059 36.6 3.6 89 464-573 32-134 (417)
268 4gd5_A Phosphate ABC transport 40.5 42 0.0014 31.4 6.1 38 27-75 34-71 (279)
269 2o20_A Catabolite control prot 40.4 60 0.0021 31.1 7.4 84 159-248 58-143 (332)
270 4ecf_A ABC-type phosphate tran 40.3 51 0.0018 30.6 6.6 71 493-573 17-91 (264)
271 2ioy_A Periplasmic sugar-bindi 40.2 60 0.002 30.2 7.2 80 165-249 2-84 (283)
272 2g2c_A Putative molybdenum cof 39.9 73 0.0025 27.1 7.0 62 166-231 7-77 (167)
273 3gv0_A Transcriptional regulat 39.6 45 0.0015 31.2 6.3 82 162-249 6-91 (288)
274 2dvz_A BUGE, putative exported 39.2 22 0.00074 34.3 3.8 90 465-573 19-125 (314)
275 1b73_A Glutamate racemase; iso 39.1 1.3E+02 0.0043 27.7 9.1 120 86-233 52-180 (254)
276 3egc_A Putative ribose operon 39.1 29 0.00099 32.6 4.8 81 162-248 6-88 (291)
277 2dri_A D-ribose-binding protei 39.1 70 0.0024 29.4 7.5 79 165-248 2-83 (271)
278 1zuw_A Glutamate racemase 1; ( 39.1 2E+02 0.0069 26.7 10.6 42 85-126 54-96 (272)
279 2iks_A DNA-binding transcripti 39.0 32 0.0011 32.4 5.1 87 157-248 13-101 (293)
280 3uhf_A Glutamate racemase; str 39.0 2.2E+02 0.0074 26.6 10.6 58 67-125 48-115 (274)
281 3lmz_A Putative sugar isomeras 38.9 84 0.0029 28.7 7.9 94 152-248 32-127 (257)
282 3hcw_A Maltose operon transcri 38.7 2.3E+02 0.0079 26.2 11.3 115 33-160 133-259 (295)
283 3eff_K Voltage-gated potassium 38.6 35 0.0012 28.1 4.6 35 597-635 19-53 (139)
284 1twy_A ABC transporter, peripl 38.6 47 0.0016 30.7 6.2 59 26-102 24-82 (290)
285 3kjx_A Transcriptional regulat 38.3 96 0.0033 29.8 8.6 79 165-249 69-149 (344)
286 3cvg_A Putative metal binding 38.3 23 0.00077 33.7 3.8 73 492-573 33-115 (294)
287 3dmy_A Protein FDRA; predicted 38.2 3.4E+02 0.012 27.7 13.2 144 81-246 45-197 (480)
288 2lnd_A De novo designed protei 38.1 83 0.0028 22.6 5.6 42 207-248 35-78 (112)
289 3out_A Glutamate racemase; str 38.1 51 0.0018 30.8 6.1 39 87-125 60-99 (268)
290 3okf_A 3-dehydroquinate syntha 37.9 50 0.0017 32.8 6.3 112 139-259 41-158 (390)
291 2rgy_A Transcriptional regulat 37.6 45 0.0016 31.2 5.9 80 163-248 7-91 (290)
292 1dxh_A Ornithine carbamoyltran 37.5 2.3E+02 0.008 27.2 10.8 133 32-199 46-187 (335)
293 4h31_A Otcase, ornithine carba 37.1 2.6E+02 0.0088 27.3 11.1 133 33-198 72-212 (358)
294 2fp4_A Succinyl-COA ligase [GD 37.1 2.8E+02 0.0094 26.3 13.1 144 81-245 80-234 (305)
295 3gzg_A Molybdate-binding perip 36.8 16 0.00056 33.9 2.5 70 495-573 38-113 (253)
296 3e61_A Putative transcriptiona 36.7 58 0.002 30.1 6.5 78 164-249 8-88 (277)
297 3hs3_A Ribose operon repressor 36.6 60 0.002 30.1 6.6 69 158-231 4-75 (277)
298 3ezx_A MMCP 1, monomethylamine 36.5 1.2E+02 0.0042 27.0 8.2 87 165-259 93-185 (215)
299 2zzv_A ABC transporter, solute 36.2 27 0.00093 34.3 4.2 63 496-561 54-118 (361)
300 1duv_G Octase-1, ornithine tra 36.2 3E+02 0.01 26.4 12.4 133 32-198 45-186 (333)
301 3ojc_A Putative aspartate/glut 36.0 24 0.00082 32.2 3.4 37 88-125 68-104 (231)
302 1y80_A Predicted cobalamin bin 35.8 1.8E+02 0.0061 25.7 9.3 86 165-258 89-178 (210)
303 2x7x_A Sensor protein; transfe 35.0 1.1E+02 0.0037 29.1 8.3 80 164-248 6-88 (325)
304 4edp_A ABC transporter, substr 34.6 18 0.00063 35.0 2.6 37 28-75 33-69 (351)
305 4gd5_A Phosphate ABC transport 34.5 42 0.0014 31.5 5.0 51 523-573 72-122 (279)
306 1ta9_A Glycerol dehydrogenase; 34.4 55 0.0019 33.3 6.1 97 153-259 80-178 (450)
307 1nrz_A PTS system, sorbose-spe 34.4 80 0.0027 26.9 6.2 81 151-241 14-94 (164)
308 3jvd_A Transcriptional regulat 34.0 3.1E+02 0.011 25.9 12.3 116 32-160 175-298 (333)
309 3iwt_A 178AA long hypothetical 33.6 84 0.0029 27.0 6.5 48 180-231 41-89 (178)
310 1oj7_A Hypothetical oxidoreduc 33.5 52 0.0018 33.0 5.8 83 155-243 43-128 (408)
311 3c3k_A Alanine racemase; struc 33.5 1.2E+02 0.004 28.1 8.1 79 163-248 7-87 (285)
312 3pzy_A MOG; ssgcid, seattle st 33.4 70 0.0024 27.2 5.7 62 165-231 8-74 (164)
313 3o1i_D Periplasmic protein TOR 33.4 34 0.0012 32.2 4.3 80 165-248 6-88 (304)
314 2rjo_A Twin-arginine transloca 32.9 69 0.0024 30.6 6.5 79 165-248 6-89 (332)
315 2qpq_A Protein BUG27; alpha/be 32.8 39 0.0013 32.2 4.5 90 465-573 8-112 (301)
316 2bon_A Lipid kinase; DAG kinas 32.5 1.2E+02 0.0041 29.2 8.1 74 165-245 30-104 (332)
317 3dnf_A ISPH, LYTB, 4-hydroxy-3 32.4 2.9E+02 0.01 26.0 10.1 51 74-124 187-239 (297)
318 2vk2_A YTFQ, ABC transporter p 32.4 66 0.0022 30.3 6.2 79 165-248 3-84 (306)
319 1us5_A Putative GLUR0 ligand b 32.4 79 0.0027 29.8 6.8 69 497-573 39-121 (314)
320 3lkv_A Uncharacterized conserv 32.1 1.6E+02 0.0054 27.7 8.8 112 31-159 140-254 (302)
321 3g40_A Na-K-CL cotransporter; 32.0 3.2E+02 0.011 25.6 10.2 211 27-261 45-280 (294)
322 1vsq_C Mannose-specific phosph 31.4 87 0.003 26.7 5.9 81 151-241 17-97 (165)
323 3kbq_A Protein TA0487; structu 31.4 99 0.0034 26.6 6.3 62 165-231 4-70 (172)
324 3fxq_A LYSR type regulator of 31.3 1.1E+02 0.0039 28.4 7.7 85 465-573 92-176 (305)
325 3grf_A Ornithine carbamoyltran 31.2 2.2E+02 0.0075 27.3 9.4 133 32-198 45-192 (328)
326 3r26_A Molybdate-binding perip 31.1 21 0.00071 32.6 2.2 70 495-573 22-97 (237)
327 2hsg_A Glucose-resistance amyl 31.1 84 0.0029 30.0 6.8 80 163-248 59-140 (332)
328 1ixh_A Phosphate-binding prote 31.0 30 0.001 33.4 3.4 71 494-573 16-87 (321)
329 3tpf_A Otcase, ornithine carba 31.0 3.5E+02 0.012 25.6 12.2 133 32-198 37-176 (307)
330 3d8u_A PURR transcriptional re 31.0 62 0.0021 29.8 5.6 78 165-248 4-83 (275)
331 4esw_A Pyrimidine biosynthesis 30.7 1.1E+02 0.0038 29.4 7.6 89 488-584 19-111 (342)
332 3cs3_A Sugar-binding transcrip 30.7 2.7E+02 0.0091 25.4 10.1 115 33-160 120-244 (277)
333 3gd5_A Otcase, ornithine carba 30.0 3.7E+02 0.013 25.7 11.9 134 32-199 49-188 (323)
334 3miz_A Putative transcriptiona 30.0 1.4E+02 0.0048 27.8 8.1 72 156-232 5-79 (301)
335 3brs_A Periplasmic binding pro 29.8 3.2E+02 0.011 24.9 11.6 119 32-160 132-258 (289)
336 3uor_A ABC transporter sugar b 29.5 56 0.0019 33.2 5.4 27 48-77 40-66 (458)
337 1gud_A ALBP, D-allose-binding 29.5 1E+02 0.0035 28.7 6.9 81 165-248 2-85 (288)
338 2qip_A Protein of unknown func 28.8 2.4E+02 0.0082 23.7 8.5 95 153-248 36-134 (165)
339 3zy2_A Putative GDP-fucose pro 28.8 2.2E+02 0.0075 27.5 8.6 89 144-247 260-348 (362)
340 1xrs_B D-lysine 5,6-aminomutas 28.7 3.3E+02 0.011 25.1 9.8 86 166-259 122-223 (262)
341 2q9u_A A-type flavoprotein; fl 28.4 3.9E+02 0.013 26.2 11.5 87 163-258 255-349 (414)
342 1uuy_A CNX1, molybdopterin bio 28.3 2.7E+02 0.0092 23.5 8.8 75 165-243 6-96 (167)
343 1pii_A N-(5'phosphoribosyl)ant 28.2 1.7E+02 0.0059 29.6 8.4 86 153-249 71-159 (452)
344 3cij_A UPF0100 protein AF_0094 28.2 53 0.0018 31.0 4.6 71 494-573 19-95 (295)
345 4f2g_A Otcase 1, ornithine car 28.2 1.8E+02 0.006 27.8 8.0 131 32-198 46-184 (309)
346 3bbl_A Regulatory protein of L 28.1 76 0.0026 29.5 5.7 78 165-248 5-88 (287)
347 3sr0_A Adenylate kinase; phosp 28.0 26 0.00088 31.3 2.1 30 97-126 2-31 (206)
348 3clk_A Transcription regulator 28.0 55 0.0019 30.5 4.7 80 164-248 8-89 (290)
349 1js1_X Transcarbamylase; alpha 27.9 3.2E+02 0.011 26.1 9.8 136 32-199 37-203 (324)
350 2csu_A 457AA long hypothetical 27.7 1.4E+02 0.0048 30.3 7.8 144 81-247 73-227 (457)
351 1dbq_A Purine repressor; trans 27.3 1.1E+02 0.0037 28.3 6.7 64 164-232 7-72 (289)
352 3cfx_A UPF0100 protein MA_0280 27.2 64 0.0022 30.4 5.0 71 494-573 19-95 (296)
353 1byk_A Protein (trehalose oper 27.1 1.4E+02 0.0046 27.0 7.2 115 33-160 117-236 (255)
354 3umf_A Adenylate kinase; rossm 27.0 22 0.00076 32.1 1.5 31 96-126 30-60 (217)
355 3qax_A Probable ABC transporte 26.2 22 0.00076 32.6 1.4 19 212-230 168-186 (268)
356 3r7f_A Aspartate carbamoyltran 26.1 3.8E+02 0.013 25.3 9.9 135 32-198 37-179 (304)
357 2qv7_A Diacylglycerol kinase D 26.0 3.4E+02 0.012 25.9 10.1 74 164-244 24-101 (337)
358 1sg6_A Pentafunctional AROM po 25.9 1.5E+02 0.005 29.5 7.5 96 159-259 31-140 (393)
359 3cfz_A UPF0100 protein MJ1186; 25.9 55 0.0019 30.8 4.2 72 493-573 18-95 (292)
360 3lte_A Response regulator; str 25.8 2.3E+02 0.0079 21.9 8.2 57 180-247 18-76 (132)
361 3mw8_A Uroporphyrinogen-III sy 25.6 32 0.0011 31.5 2.3 86 151-244 105-192 (240)
362 3g85_A Transcriptional regulat 25.5 2E+02 0.0069 26.4 8.3 120 33-160 129-257 (289)
363 3i42_A Response regulator rece 25.5 2.3E+02 0.0078 21.7 9.0 56 180-246 15-72 (127)
364 3qja_A IGPS, indole-3-glycerol 25.0 2.2E+02 0.0074 26.5 8.0 87 153-249 75-164 (272)
365 2i2x_B MTAC, methyltransferase 24.8 3.9E+02 0.013 24.4 9.8 83 165-258 124-211 (258)
366 2esn_A Probable transcriptiona 24.6 1E+02 0.0035 28.8 6.0 83 465-573 101-186 (310)
367 1vc4_A Indole-3-glycerol phosp 24.1 3.5E+02 0.012 24.7 9.2 87 153-249 68-156 (254)
368 3grc_A Sensor protein, kinase; 24.0 2.4E+02 0.0083 22.1 7.5 55 180-245 18-74 (140)
369 3re1_A Uroporphyrinogen-III sy 23.7 19 0.00066 33.7 0.4 87 149-244 121-213 (269)
370 4amu_A Ornithine carbamoyltran 23.6 3.5E+02 0.012 26.3 9.4 132 32-198 72-211 (365)
371 1uth_A LYSR-type regulatory pr 23.6 1.2E+02 0.0042 28.5 6.3 70 492-573 118-187 (315)
372 3rf7_A Iron-containing alcohol 23.5 1.9E+02 0.0064 28.4 7.6 95 139-242 28-130 (375)
373 1al3_A Cys regulon transcripti 23.1 2E+02 0.0069 27.0 7.9 84 465-573 93-176 (324)
374 2ef0_A Ornithine carbamoyltran 23.0 4.8E+02 0.016 24.6 10.4 133 32-199 46-185 (301)
375 3lvu_A ABC transporter, peripl 22.8 1.2E+02 0.0042 27.6 6.0 42 495-545 145-186 (258)
376 3eye_A PTS system N-acetylgala 22.7 1.2E+02 0.004 26.0 5.1 80 151-241 19-99 (168)
377 1ble_A Fructose permease; phos 22.6 80 0.0027 26.9 4.1 80 151-240 15-94 (163)
378 4dz1_A DALS D-alanine transpor 22.6 1.1E+02 0.0038 27.7 5.6 53 163-231 136-192 (259)
379 3lfj_A Manxb, phosphotransfera 22.3 94 0.0032 27.1 4.5 81 151-241 35-115 (187)
380 3tmg_A Glycine betaine, L-prol 22.3 3.6E+02 0.012 24.9 9.2 82 494-585 31-119 (280)
381 1r9l_A Glycine betaine-binding 22.2 1.9E+02 0.0064 27.4 7.3 69 496-572 25-101 (309)
382 1jlj_A Gephyrin; globular alph 22.2 2.5E+02 0.0085 24.4 7.4 66 162-231 12-86 (189)
383 1di6_A MOGA, molybdenum cofact 22.2 2.2E+02 0.0075 24.9 7.0 63 165-231 4-74 (195)
384 3hly_A Flavodoxin-like domain; 22.1 2.1E+02 0.0072 23.8 6.9 85 166-259 2-91 (161)
385 2b4l_A Glycine betaine-binding 22.1 1.4E+02 0.0049 27.6 6.2 79 496-583 182-267 (268)
386 3qbe_A 3-dehydroquinate syntha 22.0 1.7E+02 0.006 28.6 7.0 110 139-259 23-138 (368)
387 1vlv_A Otcase, ornithine carba 22.0 5.2E+02 0.018 24.6 11.9 134 32-199 59-199 (325)
388 2ozz_A Hypothetical protein YH 21.9 1.8E+02 0.0062 26.3 6.5 60 505-573 133-199 (231)
389 2h0a_A TTHA0807, transcription 21.7 2.9E+02 0.0097 25.0 8.4 116 33-160 116-245 (276)
390 2pbq_A Molybdenum cofactor bio 21.3 2.2E+02 0.0077 24.3 6.9 61 166-231 7-76 (178)
391 3s40_A Diacylglycerol kinase; 21.0 2.5E+02 0.0087 26.4 7.9 75 163-245 7-85 (304)
392 1ytl_A Acetyl-COA decarboxylas 20.9 1.2E+02 0.0041 26.1 4.9 35 90-126 29-67 (174)
393 3lhk_A Putative DNA binding pr 20.9 1.4E+02 0.0048 24.9 5.3 74 495-572 24-102 (154)
394 3gt7_A Sensor protein; structu 20.8 3.3E+02 0.011 21.9 9.0 57 180-247 19-77 (154)
395 3iv7_A Alcohol dehydrogenase I 20.7 65 0.0022 31.7 3.6 95 153-260 26-122 (364)
396 2hxw_A Major antigenic peptide 20.6 61 0.0021 29.1 3.2 69 495-573 16-91 (237)
397 3to5_A CHEY homolog; alpha(5)b 20.5 2.7E+02 0.0091 22.4 6.9 57 180-246 24-82 (134)
No 1
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=100.00 E-value=1.2e-70 Score=629.77 Aligned_cols=542 Identities=18% Similarity=0.313 Sum_probs=449.5
Q ss_pred eeEEEEEEeecCCccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCC-ChHHHHHHHHHhHhcCcEEEEcCCChHH
Q 006567 30 AVVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNC-SGFIGMVEALRFMETDIVAIIGPQCSTV 108 (640)
Q Consensus 30 ~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~-~~~~a~~~a~~l~~~~v~aiiGp~~s~~ 108 (640)
++|+||+++|++.. ..+.|+++|+|+||+++ ++|+++++|+++ ++..+..++|++++++|.||+||.+|..
T Consensus 1 ~~ikIG~l~~~tg~---~~~~a~~lAveeiN~~~-----~~l~~~~~D~~~~~~~~a~~~~~~l~~~~V~aiiG~~~S~~ 72 (823)
T 3kg2_A 1 NSIQIGGLFPRGAD---QEYSAFRVGMVQFSTSE-----FRLTPHIDNLEVANSFAVTNAFCSQFSRGVYAIFGFYDKKS 72 (823)
T ss_dssp CEEEEEEEEETTCH---HHHHHHHHHHHHTCCSS-----CEEEEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCTTT
T ss_pred CcceEEEEeCCCCh---HHHHHHHHHHHHHhcCC-----eEEEEEEEEcCCCChHHHHHHHHHHHhcCcEEEEcCCChhH
Confidence 36999999999864 78999999999999986 899999999999 9999999999999999999999999999
Q ss_pred HHHHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCCCCcccHHHHHHHH
Q 006567 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKL 188 (640)
Q Consensus 109 ~~~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~~~~~g~~~~~~~~~~~ 188 (640)
+.++++++..++||+|++. .+.. ..++++||+.|+ ++.+++++++++||++|++|| |+++|...++.+.+.+
T Consensus 73 ~~a~~~i~~~~~iP~is~~--~~~~--~~~~~~~r~~p~---~~~a~~~l~~~~gw~~v~ii~-d~~~g~~~~~~~~~~~ 144 (823)
T 3kg2_A 73 VNTITSFCGTLHVSFITPS--FPTD--GTHPFVIQMRPD---LKGALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSA 144 (823)
T ss_dssp HHHHHHHHHHTTCEEEECS--CCCS--SCCSSEEECSCC---CHHHHHHHHHHTTCSEEEEEE-CGGGCTHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCceeecc--cCCC--CCCceEEEeCCC---HHHHHHHHHHHCCCCEEEEEE-eCChhHHHHHHHHHHh
Confidence 9999999999999999973 3322 356899999998 789999999999999999999 7788999999999999
Q ss_pred hhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecChhhHHHHHHHHHHcCCccCCeEEEEeCccccccCCC
Q 006567 189 AERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAYMLDSA 268 (640)
Q Consensus 189 ~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~il~~a~~~gl~~~~~~~i~~~~~~~~~~~~ 268 (640)
++.|++|+....++.....+..+++.++++++++++|+|++++...++..++++|+++||..++|+|++++......+.
T Consensus 145 ~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~~~- 223 (823)
T 3kg2_A 145 AEKKWQVTAINVGNINNDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIANLGFTDGDL- 223 (823)
T ss_dssp HHTTCEEEEEECSSCCSSSTTTTTTTHHHHTTTTTCCEEEEECCHHHHHHHHHHHHHHTTTBTTCEEEECSSBSSSSCC-
T ss_pred hccCCceEEEEeecCCCCccchhHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCcCCCCeEEEEecccccccch-
Confidence 9999999988877654223467899999999999999999999999999999999999999999999999854333222
Q ss_pred CCChhhhhhccceEEEEEccCCchhHHHHHHHHhhhcCC------CCCCCchhhhhhhHHHHHHHHHHHHhhcCCccccc
Q 006567 269 SLPSETLESMQGVLVLRQHIPESDRKKNFLSRWKNLTGG------SLGMNSYGLYAYDSVWLLAHAIESFFNQGGKISFS 342 (640)
Q Consensus 269 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~------~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~ 342 (640)
........|++++.++.++.+.+++|.++|+++++. ...++.+++++||||+++++|++++.+++.....
T Consensus 224 ---~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~la~Al~~~~~~~~~~~~- 299 (823)
T 3kg2_A 224 ---LKIQFGGAEVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAFRNLRKQRIEISR- 299 (823)
T ss_dssp ---SSSSSSBCEEEEEESSCTTSHHHHHHHHHHTTSCTTTSTTCCSSCCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCC-
T ss_pred ---HHhhcCCCCceEeeeecCCchHHHHHHHHHHhhcccccCCCCccccchhhHHHHHHHHHHHHHHHHHHhhcccccc-
Confidence 123344566889998889999999999999988741 1235778999999999999999999876544321
Q ss_pred CCccccccCCCCcccCcc--cccCchHHHHHHHHhCcccccccceEEccCCCcccccEEEEEEecccEEEEEEEeCCCCC
Q 006567 343 NDSRLKTMEGGNLHLGAM--SIFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLIHAAYDIINVIGTGFRMIGYWSNYSGL 420 (640)
Q Consensus 343 ~~~~~~~~~~~~~~c~~~--~~~~~g~~l~~~l~~~~f~g~tG~v~Fd~~g~r~~~~~~I~~~~~~~~~~vG~w~~~~~l 420 (640)
......|... ..|.+|..|.++|++++|+|++|++.||++|+|....|+|++++++++++||.|++..|+
T Consensus 300 --------~~~~~~c~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~I~~~~~~g~~~vg~w~~~~g~ 371 (823)
T 3kg2_A 300 --------RGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPRKIGYWSEVDKM 371 (823)
T ss_dssp --------SSCCCCTTCSSCCCCTHHHHHHHHHTTCCCEETTEECCBCSSSCBCSCEEEEEEECSSCEEEEEEEETTTEE
T ss_pred --------CCCCCCccCCCCCcccchHHHHHHHHhcccCCcccCeEECCCCcccccEEEEEEEcCCCCeeEEEEcCCCCc
Confidence 1223456554 567889999999999999999999999999999999999999999999999999988765
Q ss_pred CcCCCcccccCCCCCCCccccceeEEeCCCCCCCCCceeecCCCCeEEEEeecCCCccceEEee------cCCcceeeee
Q 006567 421 SKEPPETLYAQPFNRSSTIQHLHSVIWPGETLSKPRGWVFPNNGKLLKIGVPNRASYREFVSKV------RGSDMFQGFC 494 (640)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~i~w~~~~~~~p~~~~~~~~~~~l~v~~~~~~~~~p~~~~~------~~~~~~~G~~ 494 (640)
..... .. ...++++|+|++... +||.+.. .+++++.|||
T Consensus 372 ~~~~~------------------------------~~--~~~~~~~l~v~~~~~---~P~~~~~~~~~~~~~~~~~~G~~ 416 (823)
T 3kg2_A 372 VLTED------------------------------DT--SGLEQKTVVVTTILE---SPYVMMKANHAALAGNERYEGYC 416 (823)
T ss_dssp EECCC------------------------------CC--SSCCCCCEEEEECCC---TTTSEECTTGGGCCGGGGEESHH
T ss_pred eeccC------------------------------cc--cccCCCEEEEEEecC---CCcEEEecCccccCCCCceEEEH
Confidence 42210 00 123578999999654 5555542 2478999999
Q ss_pred HHHHHHHHHhCCCCccEEEEEcCCCC------CCCCHhhHHHHHHcCcccEEEeeeeeeccccceEEeCccccccceEEE
Q 006567 495 IDVFTAAVNLLPYAVPYQFVAFGDGH------KNPSYTQLVDSITTGVFDAVVGDITIVTNRTKIVDFSQPYAASGLVVV 568 (640)
Q Consensus 495 ~dl~~~i~~~l~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~~~D~~~~~~~~t~~R~~~vdfs~p~~~~~~~il 568 (640)
+||++++++++||+ +++...++++ .|++|++++++|.+|++|++++++++|++|.+.+|||.||+.+++.++
T Consensus 417 ~dl~~~~a~~l~~~--~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~~~D~~~~~~~~t~~R~~~~dfs~py~~~~~~~~ 494 (823)
T 3kg2_A 417 VDLAAEIAKHCGFK--YKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIM 494 (823)
T ss_dssp HHHHHHHHHHHTCC--EEEEECSSCCCCCBCTTTCCBCHHHHHHHTTSCSEECSCCBCCHHHHTTEEECSCSEEECEEEE
T ss_pred HHHHHHHHHHcCCc--EEEEEccCCcccccCCCCCchhhHHHhhccccCcEEecceecchhheeeEEeccchhhCCEEEE
Confidence 99999999999999 5555554432 567899999999999999999999999999999999999999999999
Q ss_pred EecCC-CCcCcceeccccchhHHHHHHHHHHHHHHHHHhhhcccCCCCCCCcc--------------ccchhhhHhHhhh
Q 006567 569 VPFRK-LNTGAWAFLRPFSPLMWTVTACFFVVVGIVVWILEHRINDEFRGPPK--------------RQVITILWFSLST 633 (640)
Q Consensus 569 ~~~~~-~~~~~~~~l~pf~~~vw~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~w~~~~~ 633 (640)
++++. ...+++.|++||++.+|++++++++++++++|+++|++|++|..+.. .++.+++|+++++
T Consensus 495 v~~~~~~~~~~~~fl~Pf~~~vW~~i~~~~~~~~~~l~~~~~~~p~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (823)
T 3kg2_A 495 IKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHTEEFEDGRETQSSESTNEFGIFNSLWFSLGA 574 (823)
T ss_dssp EECCCCCCCCGGGTTTTSCHHHHHHHHHHHHHHHTTGGGTC-----------------------CHHHHHHHHHHHTTTT
T ss_pred EECCCcccccchHhhcCCchhHHHHHHHHHHHHHHHHHHHHhcChhhccCcccccccccccccccccccHHHHHHHHHHH
Confidence 99987 55788999999999999999999999999999999999888865431 2377999999999
Q ss_pred hhhc
Q 006567 634 LFFA 637 (640)
Q Consensus 634 ~~~~ 637 (640)
++-.
T Consensus 575 l~~~ 578 (823)
T 3kg2_A 575 FMQQ 578 (823)
T ss_dssp SCC-
T ss_pred HHhc
Confidence 7543
No 2
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=100.00 E-value=6e-51 Score=423.82 Aligned_cols=368 Identities=15% Similarity=0.236 Sum_probs=315.8
Q ss_pred CeeEEEEEEeecCCccchHHHHHHHHHHHHHhccCCC-CCCcEEEEEEccCCC-ChHHHHHHHHHhHhcCcEEEEcCCCh
Q 006567 29 PAVVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSI-LHGTKLNITMQSSNC-SGFIGMVEALRFMETDIVAIIGPQCS 106 (640)
Q Consensus 29 ~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~-l~g~~i~~~~~D~~~-~~~~a~~~a~~l~~~~v~aiiGp~~s 106 (640)
+++|+||+++|++.. ..+.|+++|+|+||+++++ |+|++|+++++|++| ++..++.++|++++++|.|||||.+|
T Consensus 3 ~~~i~IG~i~~~sg~---~~~~a~~lAv~eiN~~g~ill~g~~l~~~~~D~~~~d~~~a~~~a~~li~~~V~aiiG~~~S 79 (389)
T 3o21_A 3 PNTISIGGLFMRNTV---QEHSAFRFAVQLYNTNQNTTEKPFHLNYHVDHLDSSNSFSVTNAFCSQFSRGVYAIFGFYDQ 79 (389)
T ss_dssp CSEEEEEEEECTTCH---HHHHHHHHHHHHHHSCCCTTTCSSEEEEEEEECCTTCHHHHHHHHHHHHTTTCSCEEECCCT
T ss_pred CceeEEEEEeCCCCH---HHHHHHHHHHHHHhcCccccCCCcEEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEeCCCh
Confidence 578999999999864 7899999999999999998 699999999999988 99999999999999999999999999
Q ss_pred HHHHHHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCCCCcccHHHHHH
Q 006567 107 TVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALND 186 (640)
Q Consensus 107 ~~~~~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~~~~~g~~~~~~~~~ 186 (640)
..+.++++++..++||+|+++. +.++ ..+|.||+.|+ ++.++++++++++|++|++|| |++||...++.+.+
T Consensus 80 ~~~~a~~~i~~~~~iP~Is~s~--~~~~--~~~~~~~~~p~---~~~a~~~~~~~~gw~~vaii~-d~~~g~~~~~~~~~ 151 (389)
T 3o21_A 80 MSMNTLTSFCGALHTSFVTPSF--PTDA--DVQFVIQMRPA---LKGAILSLLSYYKWEKFVYLY-DTERGFSVLQAIME 151 (389)
T ss_dssp TTHHHHHHHHHHHTCCEEECSC--CCSS--CCSSEEECSCC---SHHHHHHHHHHHTCCEEEEEE-CSTTCSHHHHHHHH
T ss_pred hHHHHHHHHhccCCCceeecCC--CCcc--CCceEEEEccC---HHHHHHHHHHhCCCCEEEEEE-cCcHHHHHHHHHHH
Confidence 9999999999999999998753 3332 34567888876 899999999999999999999 88999999999999
Q ss_pred HHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecChhhHHHHHHHHHHcCCccCCeEEEEeCccccccC
Q 006567 187 KLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAYMLD 266 (640)
Q Consensus 187 ~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~il~~a~~~gl~~~~~~~i~~~~~~~~~~ 266 (640)
.+++.|++|.....++.. ...+++.++++|+++++|+|++++...++..++++|+++||..+.|+||+++.+....+
T Consensus 152 ~~~~~g~~v~~~~~~~~~---~~~d~~~~l~~ik~~~~~vii~~~~~~~~~~i~~qa~~~g~~~~~~~~i~~~~~~~~~~ 228 (389)
T 3o21_A 152 AAVQNNWQVTARSVGNIK---DVQEFRRIIEEMDRRQEKRYLIDCEVERINTILEQVVILGKHSRGYHYMLANLGFTDIL 228 (389)
T ss_dssp HHHHTTCEEEEEECTTCC---CTHHHHHHHHHHHTTTCCEEEEESCHHHHHHHHHHHHHHCSCSTTCEEEECCTTGGGCC
T ss_pred HhhcCCCeEEEEEecCCC---CcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCcccCCeEEEEccCCccccc
Confidence 999999999988766532 35689999999999999999999999999999999999999999999999886654433
Q ss_pred CCCCChhhhhhccceEEEEEccCCchhHHHHHHHHhhhcCCC------CCCCchhhhhhhHHHHHHHHHHHHhhcCCccc
Q 006567 267 SASLPSETLESMQGVLVLRQHIPESDRKKNFLSRWKNLTGGS------LGMNSYGLYAYDSVWLLAHAIESFFNQGGKIS 340 (640)
Q Consensus 267 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~------~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~ 340 (640)
. ........|++++....++++.+++|+++|+++++.. ..++.+++++|||++++++|++++..++....
T Consensus 229 ~----~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~Al~~~~~~~~~~~ 304 (389)
T 3o21_A 229 L----ERVMHGGANITGFQIVNNENPMVQQFIQRWVRLDEREFPEAKNAPLKYTSALTHDAILVIAEAFRYLRRQRVDVS 304 (389)
T ss_dssp C----HHHHHTTCEEEEEESCCTTCHHHHHHHHHHTTSCTTTSTTSSSSCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred H----HHHhcCCcceEEEEEecCCChhHHHHHHHHHhccccccCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhCcccc
Confidence 2 2344456788899888889999999999999887311 13467899999999999999999987544322
Q ss_pred ccCCccccccCCCCccc--CcccccCchHHHHHHHHhCcccccccceEEccCCCcccccEEEEEEecccEEEEEEEeCCC
Q 006567 341 FSNDSRLKTMEGGNLHL--GAMSIFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLIHAAYDIINVIGTGFRMIGYWSNYS 418 (640)
Q Consensus 341 ~~~~~~~~~~~~~~~~c--~~~~~~~~g~~l~~~l~~~~f~g~tG~v~Fd~~g~r~~~~~~I~~~~~~~~~~vG~w~~~~ 418 (640)
. .....+| ....+|++|..|+++|++++|+|++|++.||++|+|....|+|+++.++++++||.|++..
T Consensus 305 ~---------~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~Fd~~G~~~~~~~~i~~~~~~g~~~VG~w~~~~ 375 (389)
T 3o21_A 305 R---------RGSAGDCLANPAVPWSQGIDIERALKMVQVQGMTGNIQFDTYGRRTNYTIDVYEMKVSGSRKAGYWNEYE 375 (389)
T ss_dssp --------------CCSCSSSCCCTTTTHHHHHHHHTCCEEETTEEECBCTTSBBCSCCEEEEEEETTEEEEEEEEETTT
T ss_pred c---------CCCCCcCCCCCCCCCCCcHHHHHHHHhCcccccceeeeeCCCCCcccceEEEEEEcCCCceeeeEEcCCC
Confidence 1 1122346 3346788999999999999999999999999999998899999999999999999999998
Q ss_pred CCCcC
Q 006567 419 GLSKE 423 (640)
Q Consensus 419 ~l~~~ 423 (640)
|++..
T Consensus 376 g~~~~ 380 (389)
T 3o21_A 376 RFVPF 380 (389)
T ss_dssp EEECC
T ss_pred Ccccc
Confidence 87643
No 3
>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus}
Probab=100.00 E-value=1.9e-49 Score=414.16 Aligned_cols=372 Identities=16% Similarity=0.200 Sum_probs=316.1
Q ss_pred CCeeEEEEEEeecCCccchHHHHHHHHHHHHHhccCCCC-CCcEEEEEEccCC-CChHHHHHHHHHhHhcCcEEEEcCCC
Q 006567 28 RPAVVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSIL-HGTKLNITMQSSN-CSGFIGMVEALRFMETDIVAIIGPQC 105 (640)
Q Consensus 28 ~~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l-~g~~i~~~~~D~~-~~~~~a~~~a~~l~~~~v~aiiGp~~ 105 (640)
.+++|+||++||.+. .+...|+++|+|+||++++++ ++++|.+...+++ +++..+.+.+|++++++|.|||||.+
T Consensus 2 ~P~~I~IG~lf~~~~---~~~~~a~~~Av~~iN~~~~ilg~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~V~aiiG~~~ 78 (389)
T 4gpa_A 2 FPSSVQIGGLFIRNT---DQEYTAFRLAIFLHNTSPNASEAPFNLVPHVDNIETANSFAVTNAFCSQYSRGVFAIFGLYD 78 (389)
T ss_dssp CCSEEEEEEEECTTC---HHHHHHHHHHHHHHHTCSCTTTCSSEEEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEECCC
T ss_pred CCCeEEEEEEEcCCC---hHHHHHHHHHHHHHHhCCCCCCCCEEEEEEEecCCCchHHHHHHHHHHHHhcCCEEEEeCCc
Confidence 467999999999874 567899999999999999987 5677777766654 58889999999999999999999999
Q ss_pred hHHHHHHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCCCCcccHHHHH
Q 006567 106 STVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALN 185 (640)
Q Consensus 106 s~~~~~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~~~~~g~~~~~~~~ 185 (640)
|..+.++++++..++||++++++..+.. . ++.+++.|. +++++++++++|+|++|++||+++.++ ...+.+.
T Consensus 79 S~~~~~v~~i~~~~~ip~is~~~~~~~~--~--~~~~~~~~~---~~~a~~~l~~~~~w~~vaii~~~d~~~-~~~~~~~ 150 (389)
T 4gpa_A 79 KRSVHTLTSFCSALHISLITPSFPTEGE--S--QFVLQLRPS---LRGALLSLLDHYEWNCFVFLYDTDRGY-SILQAIM 150 (389)
T ss_dssp TTTHHHHHHHHHHTTCEEEECSCCCSSC--C--SSEEECSCC---CHHHHHHHHHHTTCCEEEEEECSTTCS-HHHHHHH
T ss_pred cHHHHHHHHHHHHhCCCceecccccccc--c--cCCccccCC---HHHHHHHHHHHcCCcEEEEEEecchhh-HHHHHHH
Confidence 9999999999999999999976554432 2 344555554 357999999999999999999776655 5677888
Q ss_pred HHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecChhhHHHHHHHHHHcCCccCCeEEEEeCcccccc
Q 006567 186 DKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAYML 265 (640)
Q Consensus 186 ~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~il~~a~~~gl~~~~~~~i~~~~~~~~~ 265 (640)
+.+.+.|++|.....++.. ..+++.++++++..++++||+.+...++..++++|+++||+.++|+|++++.+....
T Consensus 151 ~~~~~~g~~v~~~~~~~~~----~~d~~~~l~~i~~~~~~vIv~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~ 226 (389)
T 4gpa_A 151 EKAGQNGWHVSAICVENFN----DVSYRQLLEELDRRQEKKFVIDCEIERLQNILEQIVSVGKHVKGYHYIIANLGFKDI 226 (389)
T ss_dssp HHHHTTTCEEEEEECTTCC----HHHHHHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHTCSBTTCEEEECSSBGGGS
T ss_pred HHHHhcCceEEEEeecCCc----chhHHHHHHHhhccCCcEEEEEechhHHHHHHHHHHHhCCCCCceEEEEeCccccch
Confidence 8899999999988776654 889999999999999999999999999999999999999999999999998776554
Q ss_pred CCCCCChhhhhhccceEEEEEccCCchhHHHHHHHHhhhcC-----CCCCCCchhhhhhhHHHHHHHHHHHHhhcCCccc
Q 006567 266 DSASLPSETLESMQGVLVLRQHIPESDRKKNFLSRWKNLTG-----GSLGMNSYGLYAYDSVWLLAHAIESFFNQGGKIS 340 (640)
Q Consensus 266 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~-----~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~ 340 (640)
+. ........++.+++...+.++.+++|.++|++.+. .+..++.+++++||||+++|+|++++.+++....
T Consensus 227 ~~----~~~~~~~~~i~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~YDAV~~~A~Al~~~~~~~~~~~ 302 (389)
T 4gpa_A 227 SL----ERFIHGGANVTGFQLVDFNTPMVTKLMDRWKKLDQREYPGSETPPKYTSALTYDGVLVMAETFRSLRRQKIDIS 302 (389)
T ss_dssp CC----HHHHHHBCEEEEEECSCTTSHHHHHHHHHHTTSCTTTSTTTTSCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred hh----hhhhhcccceEEEEeecCCChHHHHHHHHHHHHhhhhcccCCCChhHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 43 45566778899999999999999999999988764 2455778999999999999999999988765432
Q ss_pred ccCCccccccCCCCcccCcccccCchHHHHHHHHhCcccccccceEEccCCCcccccEEEEEEecccEEEEEEEeCCCCC
Q 006567 341 FSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLIHAAYDIINVIGTGFRMIGYWSNYSGL 420 (640)
Q Consensus 341 ~~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~g~tG~v~Fd~~g~r~~~~~~I~~~~~~~~~~vG~w~~~~~l 420 (640)
.. .....+.|....+|++|..|.++|++++|+|+||+|.||++|+|.++.|+|+|++++++++||.|++.+||
T Consensus 303 ~~-------~~~~~~~~~~~~~~~~G~~l~~~l~~v~f~G~tG~v~Fd~~G~r~~~~~~I~~l~~~~~~~VG~W~~~~gl 375 (389)
T 4gpa_A 303 RR-------GNAGDCLANPAAPWGQGIDMERTLKQVRIQGLTGNVQFDHYGRRVNYTMDVFELKSTGPRKVGYWNDMDKL 375 (389)
T ss_dssp CT-------TCCCCTTCSSCCCCTTHHHHHHHHHTCEEEETTEEEEBCTTSCBCSCEEEEEEEETTEEEEEEEEETTTEE
T ss_pred cc-------CCccccccCCCcccchHHHHHHHHHhCceecCceeEEECCCCCCCCCEEEEEEEECCEEEEEEEEECCCCe
Confidence 11 22344557777899999999999999999999999999999999999999999999999999999999987
Q ss_pred CcCCC
Q 006567 421 SKEPP 425 (640)
Q Consensus 421 ~~~~~ 425 (640)
.+..+
T Consensus 376 ~~~~~ 380 (389)
T 4gpa_A 376 VLIQD 380 (389)
T ss_dssp EECCC
T ss_pred EECCC
Confidence 76543
No 4
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A
Probab=100.00 E-value=5.8e-49 Score=410.58 Aligned_cols=369 Identities=18% Similarity=0.240 Sum_probs=307.1
Q ss_pred eeEEEEEEeecCCccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCCh-HHHHHHHHHhHhcCcEEEEcCCChH-
Q 006567 30 AVVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSG-FIGMVEALRFMETDIVAIIGPQCST- 107 (640)
Q Consensus 30 ~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~-~~a~~~a~~l~~~~v~aiiGp~~s~- 107 (640)
++|+||+++|+++..|...+.|+++|+|+||+++++|+|++|+++++|+++++ ..+..++|++++++|.+||||.+|.
T Consensus 3 ~~ikIG~~~~~s~~~G~~~~~a~~lAv~eiN~~ggil~g~~l~~~~~D~~~~~~~~~~~~~~~l~~~~V~aiiG~~~S~~ 82 (393)
T 3om0_A 3 SSLRMAAILDDQTVCGRGERLALALAREQINGIIEVPAKARVEVDIFELQRDSQYETTDTMCQILPKGVVSVLGPSSSPA 82 (393)
T ss_dssp CEEEEEEEECCCCSSCCCHHHHHHHHHHHHHHSCCSSCCCEEEEEEEECCSSCHHHHHHHHHHHGGGCCSCEECCSSCHH
T ss_pred cceeEEEEecCCCcccHHHHHHHHHHHHHHhcCcccccCcEEEEEEEecCCCchhHHHHHHHHHHhcCcEEEECCCCchh
Confidence 47999999999998999999999999999999999999999999999999975 5677889999988999999999995
Q ss_pred HHHHHHHhhccCCceEEecccCCCCCCCCCCCcE--EEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCCCCcccHHHHH
Q 006567 108 VAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFF--VRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALN 185 (640)
Q Consensus 108 ~~~~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~--~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~~~~~g~~~~~~~~ 185 (640)
++.++++++..+++|+|+++++.. ....++++ ||+.|++..+++++++++++++|++|++||++++||....+.+
T Consensus 83 ~~~a~~~i~~~~~ip~is~~a~~~--~~~~~~~~~~fr~~p~~~~~~~~~~~~~~~~g~~~vaii~~~~~~g~~l~~~~- 159 (393)
T 3om0_A 83 SASTVSHICGEKEIPHIKVGPEET--PRLQYLRFASVSLYPSNEDVSLAVSRILKSFNYPSASLICAKAECLLRLEELV- 159 (393)
T ss_dssp HHHHHHHHHHHHTCCEEECSCCCC--C----CCSCCEESSCCHHHHHHHHHHHHHHTTSCCEEEEESSTTHHHHTHHHH-
T ss_pred HHHHHHHHHhccCCCeEeccCCcC--ccccccccceEEecCCHHHHHHHHHHHHHhCCCcEEEEEEeCchHHHHHHHHH-
Confidence 457999999999999999876541 12457888 9999999999999999999999999999999999987665544
Q ss_pred HHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecChhhHHHHHHHHHHcCCccCCeEEEEeCcccccc
Q 006567 186 DKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAYML 265 (640)
Q Consensus 186 ~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~il~~a~~~gl~~~~~~~i~~~~~~~~~ 265 (640)
+.+.+.|++|.... + +. ..+++.++++|+++++|+|++.+...++..++++|+++||..+.|+|+++++.....
T Consensus 160 ~~~~~~g~~v~~~~-~-~~----~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~ 233 (393)
T 3om0_A 160 RGFLISKETLSVRM-L-DD----SRDPTPLLKEIRDDKVSTIIIDANASISHLVLRKASELGMTSAFYKYILTTMDFPIL 233 (393)
T ss_dssp HHHHHSSSCEEEEE-C-C-----CCCSHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHHTTTTSTTCEEEECCTTGGGC
T ss_pred HhhhccCCeEEEEe-c-CC----CCCHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCcccCCeEEEEeccccccc
Confidence 44667888887654 3 23 568899999999999999999999999999999999999998889999988655433
Q ss_pred CCCCCChhhhhhccceEEEEEccCCchhHHHHHHHHhhhcCC------CCCCCchhhhhhhHHHHHHHHHHHHhhcCCcc
Q 006567 266 DSASLPSETLESMQGVLVLRQHIPESDRKKNFLSRWKNLTGG------SLGMNSYGLYAYDSVWLLAHAIESFFNQGGKI 339 (640)
Q Consensus 266 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~------~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~ 339 (640)
+. ........|++++....+.++.+++|.++|+++++. ...++.+++++|||++++++|++++.+...
T Consensus 234 ~l----~~~~~~~~~~~g~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~p~~~a~~~YDAv~~la~Al~~~~~~~~-- 307 (393)
T 3om0_A 234 HL----DGIVEDSSNILGFSMFNTSHPFYPEFVRSLNMSWRENCEASTYPGPALSAALMFDAVHVVVSAVRELNRSQE-- 307 (393)
T ss_dssp CC----TTTCCSSCSEEEEECCCTTSTTHHHHHHHHHHHHTTTSCGGGCCSCCHHHHHHHHHHHHHHHHHHHHTTTSC--
T ss_pred ch----hhhhccCCcEEEEEEecCCccHHHHHHHHHHHHhhhhccCCCCCCCchHHHHHHhHHHHHHHHHHHHhhccc--
Confidence 32 112234567888888888888899999988887731 034677899999999999999999854321
Q ss_pred cccCCccccccCCCCcccCcccccCchHHHHHHHHhCcccccccceEEccCCCcccccEEEEEEecccEEEEEEEeCCCC
Q 006567 340 SFSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLIHAAYDIINVIGTGFRMIGYWSNYSG 419 (640)
Q Consensus 340 ~~~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~g~tG~v~Fd~~g~r~~~~~~I~~~~~~~~~~vG~w~~~~~ 419 (640)
.......|....+|.++..|.++|++++|+|++|+++||++|+|.+..|+|++++++++++||.|++..|
T Consensus 308 ----------~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~~~VG~w~~~~g 377 (393)
T 3om0_A 308 ----------IGVKPLACTSANIWPHGTSLMNYLRMVEYDGLTGRVEFNSKGQRTNYTLRILEKSRQGHREIGVWYSNRT 377 (393)
T ss_dssp ----------CCCCCCCTTCCCCCTTHHHHHHHHTTCCEEETTEEECBCTTSCBCSCEEEEEEEETTEEEEEEEEECC--
T ss_pred ----------CcCCCcCCCCCCcccCchHHHHHHHhCCCCCccceEEeCCCCcccceeEEEEEeccCCceEeeeEcCCCC
Confidence 1233456887788989999999999999999999999999999989999999999999999999999888
Q ss_pred CCcC
Q 006567 420 LSKE 423 (640)
Q Consensus 420 l~~~ 423 (640)
+.+.
T Consensus 378 l~~~ 381 (393)
T 3om0_A 378 LAMN 381 (393)
T ss_dssp ----
T ss_pred cccc
Confidence 7654
No 5
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Probab=100.00 E-value=1.7e-48 Score=407.48 Aligned_cols=369 Identities=22% Similarity=0.306 Sum_probs=318.3
Q ss_pred CeeEEEEEEeecC-CccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCC-CChHHHHHHHHHhHhcCcEEEEcCCCh
Q 006567 29 PAVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSN-CSGFIGMVEALRFMETDIVAIIGPQCS 106 (640)
Q Consensus 29 ~~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~-~~~~~a~~~a~~l~~~~v~aiiGp~~s 106 (640)
+++|+||+++|++ ...|...+.|+++|+|+||+++++|++++|++++.|.. .|+..+...+|++++++|.+||||.+|
T Consensus 2 ~~~i~IG~l~~~sg~~~g~~~~~a~~lAv~eiN~~ggil~~~~l~~~~~~~~~~d~~~~~~~a~~l~~~~V~aiiG~~~S 81 (395)
T 3h6g_A 2 THVLRFGGIFEYVESGPMGAEELAFRFAVNTINRNRTLLPNTTLTYDTQKINLYDSFEASKKACDQLSLGVAAIFGPSHS 81 (395)
T ss_dssp CEEEEEEEEEEESSSCSCCHHHHHHHHHHHHHHHCSSSSSSEEEEEEEEEEETTCHHHHHHHHHHHHHHCCSCEECCSSH
T ss_pred CcceEEEEEecCCCcccchHHHHHHHHHHHHHhcCccccCCceEEEEEeecCCcChHHHHHHHHHhhhcCcEEEECCCCh
Confidence 5789999999996 45678899999999999999999998899999998876 588889999999999999999999999
Q ss_pred HHHHHHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCCCCcccHHHHHH
Q 006567 107 TVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALND 186 (640)
Q Consensus 107 ~~~~~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~~~~~g~~~~~~~~~ 186 (640)
..+.++++++..++||+|+++++++.+++. .+|+||+.|++..++.++++++++++|++|++|| |++||....+.+++
T Consensus 82 ~~~~a~~~~~~~~~ip~is~~~~~~~l~~~-~~~~~r~~~~~~~~~~~~~~~~~~~g~~~v~ii~-d~~~g~~~~~~~~~ 159 (395)
T 3h6g_A 82 SSANAVQSICNALGVPHIQTRWKHQVSDNK-DSFYVSLYPDFSSLSRAILDLVQFFKWKTVTVVY-DDSTGLIRLQELIK 159 (395)
T ss_dssp HHHHHHHHHHHHTTCCEEECSCCCCCTTCC-CCSEEEEEECHHHHHHHHHHHHHHTTCSEEEEEE-SSTHHHHHTHHHHT
T ss_pred hHHHHHHHHHhcCCCCeEeeccCccccccc-CceEEEecCCHHHHHHHHHHHHHHCCCeEEEEEE-EChhHHHHHHHHHH
Confidence 999999999999999999999988888763 5789999999999999999999999999999998 67799999999999
Q ss_pred HHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecChhhHHHHHHHHHHcCCccCCeEEEEeCccccccC
Q 006567 187 KLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAYMLD 266 (640)
Q Consensus 187 ~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~il~~a~~~gl~~~~~~~i~~~~~~~~~~ 266 (640)
.+++.|++|.... ++.+ ..+++.++++++++++|+|++++...++..++++|+++||..+.|+|++++......+
T Consensus 160 ~~~~~g~~v~~~~-~~~~----~~d~~~~l~~i~~~~~~vi~~~~~~~~~~~~~~qa~~~gl~~~~~~~i~~~~~~~~~~ 234 (395)
T 3h6g_A 160 APSRYNLRLKIRQ-LPAD----TKDAKPLLKEMKRGKEFHVIFDCSHEMAAGILKQALAMGMMTEYYHYIFTTLDLFALD 234 (395)
T ss_dssp GGGTSSCEEEEEE-CCSS----GGGGHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCSTTCEEEECCTTGGGBC
T ss_pred hhhcCCceEEEEE-eCCC----chhHHHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHccccCCceEEEEecCceeEec
Confidence 9999999998865 7655 7899999999999999999999999999999999999999999999999865433222
Q ss_pred CCCCChhhhhhccceEEEEEccCCchhHHHHHHHHhhhcCCC----------CCCCchhhhhhhHHHHHHHHHHHHhhcC
Q 006567 267 SASLPSETLESMQGVLVLRQHIPESDRKKNFLSRWKNLTGGS----------LGMNSYGLYAYDSVWLLAHAIESFFNQG 336 (640)
Q Consensus 267 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~----------~~~~~~~~~~yDav~~~a~Al~~~~~~~ 336 (640)
. ........++.++....+.++.+++|.++|++++... ..++.+++.+|||++++++|++++...
T Consensus 235 ~----~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~p~~~~~~~~~~~~~~aa~~YDav~~~a~Al~~a~~~- 309 (395)
T 3h6g_A 235 V----EPYRYSGVNMTGFRILNTENTQVSSIIEKWSMERLQAPPKPDSGLLDGFMTTDAALMYDAVHVVSVAVQQFPQM- 309 (395)
T ss_dssp C----TTTTTSCCEEEEEECSCTTSHHHHHHHHHHHHC------CCSSCBCTTCCCHHHHHHHHHHHHHHHHHHTCTTC-
T ss_pred h----HHhccCccceEEEEEecCCcHHHHHHHHHHHhcccccCcccCCCcCCCccchhHHHHHhHHHHHHHHHHhhhcC-
Confidence 2 1111112235777888888899999999998765211 114568999999999999999986332
Q ss_pred CcccccCCccccccCCCCcccCcccccCchHHHHHHHHhCcccccccceEEcc-CCCcccccEEEEEEecccEEEEEEEe
Q 006567 337 GKISFSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLTGPLKFNS-DRSLIHAAYDIINVIGTGFRMIGYWS 415 (640)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~g~tG~v~Fd~-~g~r~~~~~~I~~~~~~~~~~vG~w~ 415 (640)
....+.|.....|.++..|+++|++++|+|++|+++||+ +|+|....|.|++++++++++||.|+
T Consensus 310 --------------~~~~~~c~~~~~~~~~~~l~~al~~~~~~G~tG~i~fd~~~G~~~~~~~~i~~~~~~~~~~vG~w~ 375 (395)
T 3h6g_A 310 --------------TVSSLQCNRHKPWRFGTRFMSLIKEAHWEGLTGRITFNKTNGLRTDFDLDVISLKEEGLEKIGTWD 375 (395)
T ss_dssp --------------CCCCCCTTSCCCCTTHHHHHHHHHHCEEEETTEEEECCTTTSEECCCCEEEEEEETTEEEEEEEEE
T ss_pred --------------CCcCCCCCCCCcCcccHHHHHHHhcCCCcCcceeeEecCCCCeecCCeEEEEEeccCCceEEEEEc
Confidence 123456888888999999999999999999999999999 99999899999999999999999999
Q ss_pred CCCCCCcC
Q 006567 416 NYSGLSKE 423 (640)
Q Consensus 416 ~~~~l~~~ 423 (640)
+..|+.+.
T Consensus 376 ~~~g~~~~ 383 (395)
T 3h6g_A 376 PASGLNMT 383 (395)
T ss_dssp TTTEECCC
T ss_pred CCCCcccc
Confidence 98887654
No 6
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Probab=100.00 E-value=1.4e-48 Score=404.71 Aligned_cols=362 Identities=17% Similarity=0.260 Sum_probs=290.3
Q ss_pred eEEEEEEeecCCccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCC-CChHHHHHHHHHhHhcCcEEEEcCCChHHH
Q 006567 31 VVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSN-CSGFIGMVEALRFMETDIVAIIGPQCSTVA 109 (640)
Q Consensus 31 ~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~-~~~~~a~~~a~~l~~~~v~aiiGp~~s~~~ 109 (640)
+|+||+++|++. ...+.|+++|+++||++ |++|++++.|++ +++..+.+++|++++++|.+|+||.+|..+
T Consensus 2 ~i~IG~i~~~sg---~~~~~~~~lAv~~iN~~-----g~~l~~~~~d~~~~d~~~a~~~~~~li~~~V~aiiG~~~S~~~ 73 (376)
T 3hsy_A 2 SIQIGGLFPRGA---DQEYSAFRVGMVQFSTS-----EFRLTPHIDNLEVANSFAVTNAFCSQFSRGVYAIFGFYDKKSV 73 (376)
T ss_dssp EEEEEEEEETTC---HHHHHHHHHHHHHTCCS-----SCEEEEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCTTTH
T ss_pred ceeEEEEeCCCC---HHHHHHHHHHHHHHhcC-----CeEEEEEEeecCCCChHHHHHHHHHHHhcCcEEEECCCchhHH
Confidence 699999999985 46799999999999987 689999999965 499999999999999999999999999999
Q ss_pred HHHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCCCCcccHHHHHHHHh
Q 006567 110 HIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLA 189 (640)
Q Consensus 110 ~~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~~~~~g~~~~~~~~~~~~ 189 (640)
.++++++..++||+|+++++ . ...++|+||+.|+ +++++++++++++|++|++|| |++||....+.+++.++
T Consensus 74 ~av~~~~~~~~ip~is~~~~--~--~~~~~~~~~~~p~---~~~a~~~~~~~~gw~~vaii~-d~~~g~~~~~~~~~~~~ 145 (376)
T 3hsy_A 74 NTITSFCGTLHVSFITPSFP--T--DGTHPFVIQMRPD---LKGALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSAA 145 (376)
T ss_dssp HHHHHHHHHHTCEEEECSCC--C--CSCCTTEEECSCC---CHHHHHHHHHHTTCCEEEEEE-CSTTCSHHHHHHHHHHH
T ss_pred HHHHHHhccCcCceeecCCC--C--cccCCceEEeCcc---HHHHHHHHHHhcCCCEEEEEE-eCchhHHHHHHHHHHhh
Confidence 99999999999999998652 2 2345789999876 899999999999999999999 88999999999999999
Q ss_pred hcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecChhhHHHHHHHHHHcCCccCCeEEEEeCccccccCCCC
Q 006567 190 ERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAYMLDSAS 269 (640)
Q Consensus 190 ~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~il~~a~~~gl~~~~~~~i~~~~~~~~~~~~~ 269 (640)
+.|++|.....++........+++.++.+|+++++|+|++++...++..++++++++||..+.|+||++++.....+.
T Consensus 146 ~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~qa~~~g~~~~~~~~i~~~~~~~~~~~-- 223 (376)
T 3hsy_A 146 EKKWQVTAINVGNINNDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIANLGFTDGDL-- 223 (376)
T ss_dssp HHTCEEEEEECTTCC--------------------CEEEEESCHHHHHHHHHHHHHHTSSGGGCEEEECSSBTTSTTG--
T ss_pred hcCCeEEEEEeccccccccchhHHHHHHHHhhCCCeEEEEECCHHHHHHHHHHHHHcccCCCCcEEEEcCCCccccch--
Confidence 999999887665432112367899999999999999999999999999999999999999889999998743222111
Q ss_pred CChhhhhhccceEEEEEccCCchhHHHHHHHHhhhcCCC------CCCCchhhhhhhHHHHHHHHHHHHhhcCCcccccC
Q 006567 270 LPSETLESMQGVLVLRQHIPESDRKKNFLSRWKNLTGGS------LGMNSYGLYAYDSVWLLAHAIESFFNQGGKISFSN 343 (640)
Q Consensus 270 ~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~------~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~ 343 (640)
........+++++.+..++++.+++|.++|+++++.. ..++.+++++|||++++++|++++.+++.....
T Consensus 224 --~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~aa~~YDav~~la~Ai~~~~~~~~~~~~-- 299 (376)
T 3hsy_A 224 --LKIQFGGANVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAFRNLRKQRIEISR-- 299 (376)
T ss_dssp --GGSCCTTCEEEEEESCCTTSHHHHHHHHHHTTSCTTTSTTCSCSSCCHHHHHHHHHHHHHHHHHHHHHHTTCCCSC--
T ss_pred --HHhhcCCcCceEEEEecCCchHHHHHHHHHHhccccccCCCCCcccchhHHHHHHHHHHHHHHHHHHHhcCCcccc--
Confidence 1122223447888888888999999999999887311 147889999999999999999999875443221
Q ss_pred CccccccCCCCccc--CcccccCchHHHHHHHHhCcccccccceEEccCCCcccccEEEEEEecccEEEEEEEeCCCCCC
Q 006567 344 DSRLKTMEGGNLHL--GAMSIFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLIHAAYDIINVIGTGFRMIGYWSNYSGLS 421 (640)
Q Consensus 344 ~~~~~~~~~~~~~c--~~~~~~~~g~~l~~~l~~~~f~g~tG~v~Fd~~g~r~~~~~~I~~~~~~~~~~vG~w~~~~~l~ 421 (640)
.+....| ....+|.+|..|+++|++++|+|++|+++||++|+|....|+|++++++++++||.|++..|++
T Consensus 300 -------~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~~~VG~w~~~~g~~ 372 (376)
T 3hsy_A 300 -------RGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPRKIGYWSEVDKMV 372 (376)
T ss_dssp -------CCCCCCTTCSSCCCCHHHHHHHHHHHHCCEEETTEEECBCTTSBBCSCEEEEEEEETTEEEEEEEEETTTEEE
T ss_pred -------CCCCCccCCCCCCCcCCcHHHHHHHHhcCcCCCccceeECCCCCCccceEEEEEecCCCceEEEEEcCCCCce
Confidence 1223356 5566788899999999999999999999999999999999999999999999999999988764
No 7
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*
Probab=100.00 E-value=1.6e-48 Score=412.89 Aligned_cols=386 Identities=19% Similarity=0.330 Sum_probs=322.9
Q ss_pred cCCCeeEEEEEEeecCC-----ccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhc--CcE
Q 006567 26 SARPAVVNVGALFTLDS-----TIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMET--DIV 98 (640)
Q Consensus 26 ~~~~~~i~IG~l~~~~~-----~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~--~v~ 98 (640)
....++|+||+++|++. ..|.....|+++|+++||++ ++++|++|+++++|+++++..++..+++++.+ +|.
T Consensus 9 ~~~~~~i~IG~~~plsG~~a~~~~g~~~~~~~~lAv~~iN~~-g~l~g~~l~l~~~D~~~~~~~a~~~a~~li~~~~~v~ 87 (433)
T 4f11_A 9 PPSSPPLSIMGLMPLTKEVAKGSIGRGVLPAVELAIEQIRNE-SLLRPYFLDLRLYDTECDNAKGLKAFYDAIKYGPNHL 87 (433)
T ss_dssp --CCCEEEEEEEECCCTTSTTHHHHHHHHHHHHHHHHHHHHT-TTTTTCEEEEEEEECTTCHHHHHHHHHHHHHHSCCCS
T ss_pred cCCCCceEEEEEEEecCCCCCCccchhHHHHHHHHHHHHhcc-CCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCCceE
Confidence 34567899999999985 45778999999999999999 77789999999999999999999999999975 899
Q ss_pred EEEcCCChHHHHHHHHhhccCCceEEecccCCCCCCC-CCCCcEEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCCCC
Q 006567 99 AIIGPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSS-LQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYG 177 (640)
Q Consensus 99 aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~l~~-~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~~~~~g 177 (640)
+||||.+|..+.++++++..+++|+|+++++++.+++ ..|+++||+.|++..++.++++++++++|++|++||++++||
T Consensus 88 aviG~~~S~~~~a~~~~~~~~~ip~is~~~~~~~l~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~g~~~v~ii~~~~~~g 167 (433)
T 4f11_A 88 MVFGGVCPSVTSIIAESLQGWNLVQLSFAATTPVLADKKKYPYFFRTVPSDNAVNPAILKLLKHYQWKRVGTLTQDVQRF 167 (433)
T ss_dssp EEEECCSHHHHHHHHHTHHHHTCEEEESSCCCGGGGCTTTCTTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEESSHHH
T ss_pred EEECCCcchHHHHHHHHHHhcCceEEEcccCCccccccccCCceEEecCchHHHHHHHHHHHHHcCCcEEEEEEecchhh
Confidence 9999999999999999999999999999999999988 468999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecChhhHHHHHHHHHHcCCccCCeEEEE
Q 006567 178 RNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIA 257 (640)
Q Consensus 178 ~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~il~~a~~~gl~~~~~~~i~ 257 (640)
....+.+++.+++.|++|.....++. ++..++++++++++|+|++++...++..++++|+++|+...+|+||+
T Consensus 168 ~~~~~~~~~~~~~~g~~v~~~~~~~~-------d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~~i~ 240 (433)
T 4f11_A 168 SEVRNDLTGVLYGEDIEISDTESFSN-------DPCTSVKKLKGNDVRIILGQFDQNMAAKVFCCAYEENMYGSKYQWII 240 (433)
T ss_dssp HHHHHHHHHHSSSSSCEEEEEEEESS-------CCHHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHTTCCSTTCEEEE
T ss_pred HHHHHHHHHHHHHcCceEEEEeccCc-------CHHHHHHHHhhCCCeEEEEeCcHHHHHHHHHHHHHcCCCCCCeEEEE
Confidence 99999999999999999998877652 56788999999999999999999999999999999999988899999
Q ss_pred eCccccccC---------CCCCChhhhhhccceEEEEEccCCc--------hhHHHHHHHHhhhcCCCCCCCchhhhhhh
Q 006567 258 TDWLAYMLD---------SASLPSETLESMQGVLVLRQHIPES--------DRKKNFLSRWKNLTGGSLGMNSYGLYAYD 320 (640)
Q Consensus 258 ~~~~~~~~~---------~~~~~~~~~~~~~g~~~~~~~~~~~--------~~~~~f~~~~~~~~~~~~~~~~~~~~~yD 320 (640)
++....... .........+..+|++++.++.+.. ...++|.++|+++. .+..++.+++++||
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~f~~~y~~~~-~~~~~~~~a~~~YD 319 (433)
T 4f11_A 241 PGWYEPSWWEQVHTEANSSRCLRKNLLAAMEGYIGVDFEPLSSKQIKTISGKTPQQYEREYNNKR-SGVGPSKFHGYAYD 319 (433)
T ss_dssp ESCSCTTTTTCC------CCSCHHHHHHHHTTCEEEEECSSCCCCCCCTTSCCHHHHHHHHHHHH-TTSCCCTTHHHHHH
T ss_pred cCcchHhHhcccccCCCCCCCCHHHHHHHHhCEEEEEEeecCCCCCcccCCCCHHHHHHHHHHhc-CCCCcccchhhHHH
Confidence 987222111 0112234557889999998876532 33788999998872 15677889999999
Q ss_pred HHHHHHHHHHHHhhcCCcccccCCccccccCCCCcccC--cccccCchHHHHHHHHhCcccccccceEEccCCCcccccE
Q 006567 321 SVWLLAHAIESFFNQGGKISFSNDSRLKTMEGGNLHLG--AMSIFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLIHAAY 398 (640)
Q Consensus 321 av~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~c~--~~~~~~~g~~l~~~l~~~~f~g~tG~v~Fd~~g~r~~~~~ 398 (640)
||+++++|++++....... ..+.+|. +...|.++..|.++|++++|+|++|+++| ++|+|. ..|
T Consensus 320 Av~~la~Al~~a~~~~~~~------------~~~~~l~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~f-~~Gd~~-~~~ 385 (433)
T 4f11_A 320 GIWVIAKTLQRAMETLHAS------------SRHQRIQDFNYTDHTLGRIILNAMNETNFFGVTGQVVF-RNGERM-GTI 385 (433)
T ss_dssp HHHHHHHHHHHHHHHHHHS------------SSCCCGGGCSSCCHHHHHHHHHHHHTCEEEETTEEEEE-ETTEEE-CEE
T ss_pred HHHHHHHHHHHHHHHHhcc------------CCCCcccccccccHHHHHHHHHHHHhcEEEccceEEEE-ecCcee-eeE
Confidence 9999999999986532100 0000111 12235568999999999999999999999 899975 899
Q ss_pred EEEEEecccEEEEEEEeCCCC-CCcCCCcccccCCCCCCCccccceeEEeCCCCC
Q 006567 399 DIINVIGTGFRMIGYWSNYSG-LSKEPPETLYAQPFNRSSTIQHLHSVIWPGETL 452 (640)
Q Consensus 399 ~I~~~~~~~~~~vG~w~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~i~w~~~~~ 452 (640)
.|++++++++++||.|++..+ |. .+.+.|.|+++.+
T Consensus 386 ~I~~~~~g~~~~VG~~~~~~~~l~------------------~~~~~i~W~~~~~ 422 (433)
T 4f11_A 386 KFTQFQDSREVKVGEYNAVADTLE------------------IINDTIRFQGSEP 422 (433)
T ss_dssp EEEEEETTEEEEEEEEETTTTEEE------------------ECTTTCCCSSSSC
T ss_pred EEEEEECCceEEEEEEECCCCeEE------------------EeCCceECCCCCC
Confidence 999999999999999986432 21 1224789999874
No 8
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus}
Probab=100.00 E-value=1.4e-47 Score=398.46 Aligned_cols=364 Identities=18% Similarity=0.232 Sum_probs=311.0
Q ss_pred CCCeeEEEEEEeecCCccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCC-ChHHHHHHHHHhHhcCcEEEEcCCC
Q 006567 27 ARPAVVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNC-SGFIGMVEALRFMETDIVAIIGPQC 105 (640)
Q Consensus 27 ~~~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~-~~~~a~~~a~~l~~~~v~aiiGp~~ 105 (640)
..+++|+||+++|++.. ..+.|+++|+++||+++ +|++++.|+++ ++..+++++|++++++|.+|+||.+
T Consensus 6 ~~~~~ikIG~~~~~sg~---~~~~a~~lAv~~iN~~g------~l~~~~~D~~~~d~~~a~~~~~~l~~~~V~aiiG~~~ 76 (384)
T 3saj_A 6 AMPNNIQIGGLFPNQQS---QEHAAFRFALSQLTEPP------KLLPQIDIVNISDSFEMTYRFCSQFSKGVYAIFGFYE 76 (384)
T ss_dssp CCCSEEEEEEEESCSSS---HHHHHHHHHHTTCCSSS------EEEEEEEECCTTCHHHHHHHHHHHHHTTCSCEEECCC
T ss_pred CCCcceeEEEEecCCCH---HHHHHHHHHHHHHhcCC------ccceeeEecccCchhhHHHHHHHHHhcCeEEEECCCC
Confidence 45689999999999864 78999999999999875 89999999887 9999999999999999999999999
Q ss_pred hHHHHHHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCCCCcccHHHHH
Q 006567 106 STVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALN 185 (640)
Q Consensus 106 s~~~~~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~~~~~g~~~~~~~~ 185 (640)
|..+.++++++..++||+|+++ ++.++ ..+|.+|+.|+ ++.++++++++++|++|++|| |++||....+.++
T Consensus 77 S~~~~a~~~~~~~~~iP~is~~--~~~~~--~~~~~~~~~p~---~~~a~~~~~~~~g~~~v~ii~-d~~~g~~~~~~~~ 148 (384)
T 3saj_A 77 RRTVNMLTSFCGALHVCFITPS--FPVDT--SNQFVLQLRPE---LQEALISIIDHYKWQTFVYIY-DADRGLSVLQRVL 148 (384)
T ss_dssp HHHHHHHHHHHHHHTCCEEECS--CCCSS--CCTTEEECSCC---CHHHHHHHHHHTTCCEEEEEE-CSTTCSHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCeEecc--ccCcC--ccCceEEeccc---HHHHHHHHHHHCCCcEEEEEE-eCchhHHHHHHHH
Confidence 9999999999999999999974 34443 34678888887 799999999999999999999 7789999999999
Q ss_pred HHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecChhhHHHHHHHHHHcCCccCCeEEEEeCcccccc
Q 006567 186 DKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAYML 265 (640)
Q Consensus 186 ~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~il~~a~~~gl~~~~~~~i~~~~~~~~~ 265 (640)
+.+++.|++|.....++.+ ..++..++.+++++++|+|++++...++..++++|+++||..+.|+|++++.+....
T Consensus 149 ~~~~~~g~~v~~~~~~~~~----~~d~~~~l~~ik~~~~~vii~~~~~~~~~~~~~qa~~~g~~~~~~~~i~~~~~~~~~ 224 (384)
T 3saj_A 149 DTAAEKNWQVTAVNILTTT----EEGYRMLFQDLEKKKERLVVVDCESERLNAILGQIVKLEKNGIGYHYILANLGFMDI 224 (384)
T ss_dssp HHHHHHTCEEEEEEGGGCC----HHHHHHTTTTCCSCSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEEESSSCGGGS
T ss_pred HHhhhcCceEEEEEeccCC----chhHHHHHHHHhccCCcEEEEEcCHHHHHHHHHHHHHcCCCCCCcEEEEECCCcccc
Confidence 9999999999987755444 788999999999999999999999999999999999999998889999987543322
Q ss_pred CCCCCChhhhhhccceEEEEEccCCchhHHHHHHHHhhhcCC------CCCCCchhhhhhhHHHHHHHHHHHHhhcCCcc
Q 006567 266 DSASLPSETLESMQGVLVLRQHIPESDRKKNFLSRWKNLTGG------SLGMNSYGLYAYDSVWLLAHAIESFFNQGGKI 339 (640)
Q Consensus 266 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~------~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~ 339 (640)
+. ........|++++.+..+.++.+++|.++|+++++. ...++.+++++|||++++++|++++..++..+
T Consensus 225 ~~----~~~~~~~~~v~~~~~~~~~~~~~~~F~~~~~~~~~~~~p~~~~~~~~~~aa~~YDav~~~a~Al~~~~~~~~~~ 300 (384)
T 3saj_A 225 DL----NKFKESGANVTGFQLVNYTDTIPARIMQQWRTSDSRDHTRVDWKRPKYTSALTYDGVKVMAEAFQSLRRQRIDI 300 (384)
T ss_dssp CH----HHHHHTTCCEEEEECCCTTSHHHHHHHHHHHHHHHHC------CCCCHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred cH----HHhhCCCcceEEEEeecCCChHHHHHHHHHHhcCccccCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhccce
Confidence 11 223345567889998888899999999999987731 11456789999999999999999998765433
Q ss_pred cccCCccccccCCCCcccCcc--cccCchHHHHHHHHhCcccccccceEEccCCCcccccEEEEEEecccEEEEEEEeCC
Q 006567 340 SFSNDSRLKTMEGGNLHLGAM--SIFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLIHAAYDIINVIGTGFRMIGYWSNY 417 (640)
Q Consensus 340 ~~~~~~~~~~~~~~~~~c~~~--~~~~~g~~l~~~l~~~~f~g~tG~v~Fd~~g~r~~~~~~I~~~~~~~~~~vG~w~~~ 417 (640)
.. ......|... .+|.+|..|+++|++++|+|++|+++||++|+|.+..|+|++++++++++||.|++.
T Consensus 301 ~~---------~~~~~~c~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~~~VG~W~~~ 371 (384)
T 3saj_A 301 SR---------RGNAGDCLANPAVPWGQGIDIQRALQQVRFEGLTGNVQFNEKGRRTNYTLHVIEMKHDGIRKIGYWNED 371 (384)
T ss_dssp CC---------CCSCCCSCCBSCCCCTTHHHHHHHHHSCCEEETTEEECBCTTSBBCSCCEEEEEEETTEEEEEEEEETT
T ss_pred ec---------CCCCCCCCCCCCCCcCCcHHHHHHHHhCcCcccceeeEeCCCCCcccceEEEEEeccCCcceeEEEcCC
Confidence 21 1223457653 567889999999999999999999999999999999999999999999999999998
Q ss_pred CCCCcCC
Q 006567 418 SGLSKEP 424 (640)
Q Consensus 418 ~~l~~~~ 424 (640)
.|+.+..
T Consensus 372 ~gl~~~~ 378 (384)
T 3saj_A 372 DKFVPAA 378 (384)
T ss_dssp TEEEECC
T ss_pred CCccccC
Confidence 8876543
No 9
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=100.00 E-value=1e-46 Score=399.75 Aligned_cols=358 Identities=16% Similarity=0.241 Sum_probs=297.3
Q ss_pred CCeeEEEEEEeecCC---ccchHHHHHHHHHHHHHhccCC----CCCCcEEEEEEccCCCChHHHHHHHHHhH----hcC
Q 006567 28 RPAVVNVGALFTLDS---TIGRVAKIAIEEAVKDVNSNSS----ILHGTKLNITMQSSNCSGFIGMVEALRFM----ETD 96 (640)
Q Consensus 28 ~~~~i~IG~l~~~~~---~~g~~~~~a~~~Av~~iN~~~~----~l~g~~i~~~~~D~~~~~~~a~~~a~~l~----~~~ 96 (640)
.+++|+||+++|++. ..|.....|+++|+|+||++++ +|+|++|+++++|++|++. ++..+.+++ .++
T Consensus 6 ~~~~i~IG~~~p~sg~~~~~g~~~~~a~~~Av~eiN~~~~~~~~ll~g~~l~~~~~D~~~~~~-a~~~~~~~~~~~~~~~ 84 (441)
T 1jdp_A 6 PPQKIEVLVLLPQDDSYLFSLTRVRPAIEYALRSVEGNGTGRRLLPPGTRFQVAYEDSDCGNR-ALFSLVDRVAAARGAK 84 (441)
T ss_dssp CCCEEEEEEEECSSTTSTTCHHHHHHHHHHHHHHHCC-----CCSCTTCEEEEEEEECTTSTH-HHHHHHHHHHHTTTCC
T ss_pred CCCceEEEEEcCCCCCcccchhhhHHHHHHHHHHHHhCCCcccccCCCcEEEEEEecCCCchh-HHHHHHHHHHhhccCC
Confidence 356899999999974 3356778999999999999998 8899999999999999987 666555544 338
Q ss_pred cEEEEcCCChHHHHHHHHhhccCCceEEecccCCCCCCCC--CCCcEEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcC
Q 006567 97 IVAIIGPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSL--QYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDN 174 (640)
Q Consensus 97 v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~l~~~--~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~~~ 174 (640)
|.+||||.+|..+.++++++..+++|+|+++++++.+++. .||++||+.|++..++.++++++++++|++|++|++|+
T Consensus 85 v~aiiG~~~S~~~~~v~~~~~~~~ip~is~~~~~~~ls~~~~~~~~~fr~~p~~~~~~~a~~~~~~~~~w~~v~ii~~d~ 164 (441)
T 1jdp_A 85 PDLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDSEYSHLTRVAPAYAKMGEMMLALFRHHHWSRAALVYSDD 164 (441)
T ss_dssp CSEEECCCSHHHHHHHHHHHHHHTCCEEESCCCSGGGGCTTTTTTTEEECSCCHHHHHHHHHHHHHHHTCCEEEEEEECC
T ss_pred ceEEECCCchhhHHHHHHHHhhcCCcEEcCCCCchhhccccccCCceEEecCcHHHHHHHHHHHHHhcCCcEEEEEEEcC
Confidence 9999999999999999999999999999999999999884 69999999999999999999999999999999999999
Q ss_pred CCCcc---cHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecChhhHHHHHHHHHHcCCccC
Q 006567 175 EYGRN---GVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGN 251 (640)
Q Consensus 175 ~~g~~---~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~il~~a~~~gl~~~ 251 (640)
+||+. ..+.+++.+++.|++|.....++.. ..++..++++++ +++|+|++++...++..+++++++.||..+
T Consensus 165 ~~g~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~----~~d~~~~l~~i~-~~~~vii~~~~~~~~~~~~~~~~~~gl~~~ 239 (441)
T 1jdp_A 165 KLERNCYFTLEGVHEVFQEEGLHTSIYSFDETK----DLDLEDIVRNIQ-ASERVVIMCASSDTIRSIMLVAHRHGMTSG 239 (441)
T ss_dssp SSSCHHHHHHHHHHHHHHHHTCEEEEEEECTTS----CCCHHHHHHHHH-HHCSEEEEESCHHHHHHHHHHHHHTTCTTT
T ss_pred CcccchHHHHHHHHHHHHhcCcEEEEEEecCCc----ccCHHHHHHHhh-cCCcEEEEecCHHHHHHHHHHHHHcCCCCC
Confidence 99999 8999999999999999887766543 446899999999 899999999999999999999999999888
Q ss_pred CeEEEEeCc----------cccccCCCCCChhhhhhccceEEEEEccCCchhHHHHHHHHhhh-----cCCCCCCCchhh
Q 006567 252 GYVWIATDW----------LAYMLDSASLPSETLESMQGVLVLRQHIPESDRKKNFLSRWKNL-----TGGSLGMNSYGL 316 (640)
Q Consensus 252 ~~~~i~~~~----------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~-----~~~~~~~~~~~~ 316 (640)
.|+|++++. |... ............++.++....+..+.+++|.++|+++ |+.+..++.+.+
T Consensus 240 ~~v~i~~~~~~~~~~~~~~w~~~---~~~~~~~~~~~~~~~g~~~~~~~~p~~~~F~~~~~~~~~~~~~~~~~~~~~~~~ 316 (441)
T 1jdp_A 240 DYAFFNIELFNSSSYGDGSWKRG---DKHDFEAKQAYSSLQTVTLLRTVKPEFEKFSMEVKSSVEKQGLNMEDYVNMFVE 316 (441)
T ss_dssp TCEEEEECSSCCCSTTTCTTCCS---STTHHHHHHHGGGEEEEEECCCCCHHHHHHHHHHHHHHHTTTCCCCSSCCHHHH
T ss_pred CEEEEEEeccccccccCCCCccC---CcccHHHHHHHHhheEEeecCCCCchHHHHHHHHHHHHhhCCCCccchhhhHHH
Confidence 899999883 3211 0011111134566667777777889999999999876 421113456789
Q ss_pred hhhhHHHHHHHHHHHHhhcCCcccccCCccccccCCCCcccCcccccCchHHHHHHHHhCcccccccceEEccCCCcccc
Q 006567 317 YAYDSVWLLAHAIESFFNQGGKISFSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLIHA 396 (640)
Q Consensus 317 ~~yDav~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~g~tG~v~Fd~~g~r~~~ 396 (640)
++||||+++++|++++.+.+.. +.++..|.++|++++|+|++|++.||++|++. .
T Consensus 317 ~~YdAv~~~A~Al~~~~~~~~~------------------------~~~~~~l~~~l~~~~f~g~~G~v~fd~~Gd~~-~ 371 (441)
T 1jdp_A 317 GFHDAILLYVLALHEVLRAGYS------------------------KKDGGKIIQQTWNRTFEGIAGQVSIDANGDRY-G 371 (441)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCC------------------------TTCHHHHHHHHSSEEEEETTEEEEECTTSBBC-C
T ss_pred HHHHHHHHHHHHHHHHHHhCCC------------------------CCCHHHHHHHHhCCeeECCccceEECCCCCcc-c
Confidence 9999999999999998654210 23588999999999999999999999999974 8
Q ss_pred cEEEEEEe---cccEEEEEEEeCCCC
Q 006567 397 AYDIINVI---GTGFRMIGYWSNYSG 419 (640)
Q Consensus 397 ~~~I~~~~---~~~~~~vG~w~~~~~ 419 (640)
.|+|++++ ++.+++||.|++..+
T Consensus 372 ~~~I~~~~~~~~g~~~~VG~~~~~~~ 397 (441)
T 1jdp_A 372 DFSVIAMTDVEAGTQEVIGDYFGKEG 397 (441)
T ss_dssp EEEEEEEEETTTTEEEEEEEEETTTT
T ss_pred cEEEEecccCCCCceEEEEEEcCCCC
Confidence 89999986 356999999998654
No 10
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Probab=100.00 E-value=8.1e-47 Score=393.06 Aligned_cols=338 Identities=23% Similarity=0.331 Sum_probs=283.2
Q ss_pred CCeeEEEEEEeecCCccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHH-hHhcCcEEEEc----
Q 006567 28 RPAVVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALR-FMETDIVAIIG---- 102 (640)
Q Consensus 28 ~~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~-l~~~~v~aiiG---- 102 (640)
.+++|+||+++|++ ..+.|+++|++++|++++. .+++|+++..|++++|..++.++|+ |++++|.||+|
T Consensus 2 ~~~~i~IG~i~~~s-----~~~~~~~lAv~~iN~~~~~-~~~~l~~~~~d~~~d~~~a~~~~~~~Li~~~V~aiiG~~~~ 75 (384)
T 3qek_A 2 DPKIVNIGAVLSTK-----KHEQIFREAVNQANKRHFT-RKIQLQATSVTHRPNAIQMALSVCEDLISSQVYAILVSHPP 75 (384)
T ss_dssp CCEEEEEEEEESSH-----HHHHHHHHHHHHHHHHSCC-SSEEEEEEEEECCSSHHHHHHHHHHHTGGGTEEEEEECC--
T ss_pred CceEEEEeEEeeCc-----hHHHHHHHHHHHHhccccC-CceEEEEEEecccCCHHHHHHHHHHHHHHcCceEEEEecCC
Confidence 46789999999997 5799999999999999865 5899999999999999999988777 88889999999
Q ss_pred -CCChHHHHHHHHhhccCCceEEecccCCCCCCC-CCCCcEEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCCCCccc
Q 006567 103 -PQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSS-LQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNG 180 (640)
Q Consensus 103 -p~~s~~~~~v~~~~~~~~iP~is~~~~~~~l~~-~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~~~~~g~~~ 180 (640)
|.++..+.++++++..+++|+|+++++++.+++ ..||++||+.|++..++.++++++++++|++|++||+|++||...
T Consensus 76 ~~~~s~~~~a~~~~~~~~~iP~is~~~~~~~ls~~~~~~~~fr~~~~~~~~~~a~~~~~~~~gw~~v~ii~~d~~~G~~~ 155 (384)
T 3qek_A 76 APTDHLTPTPISYTAGFYRIPVIGLTTRMSIYSDKSIHLSFLRTVPPYSHQALVWFEMMRLFNWNHVILIVSDDHEGRAA 155 (384)
T ss_dssp ------CCHHHHHHHHTTTCCEEESSCCCGGGGCSSSCTTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEESSHHHHHH
T ss_pred CCccchhHHHHHHHHhcCCCCEEecccCchhccCcccCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCcccHHH
Confidence 567778889999999999999999999988887 578999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCeEEE-----------E----------eeccCCCCCCChhHHHHHHHHHhcCCceEEEEecChhhHHHH
Q 006567 181 VSALNDKLAERRCRIS-----------Y----------KSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQV 239 (640)
Q Consensus 181 ~~~~~~~~~~~g~~v~-----------~----------~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~i 239 (640)
.+.+++.+++.|+++. + ...+.. ...+++.++.+++++++|+|+++++..++..+
T Consensus 156 ~~~~~~~~~~~g~~v~~~~~~~~~~v~~~~~~~~~~~~v~~~~~----~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~ 231 (384)
T 3qek_A 156 QKKLETLLEGKESKSKKRNYENLDQLSYDNKRGPKADKVLQFEP----GTKNLTALLLEAKELEARVIILSASEDDATAV 231 (384)
T ss_dssp HHHHHHHHC--------------CCSCCCCCCCCEEEEEEEECT----TCSCCHHHHHHHHTSSCCEEEEECCHHHHHHH
T ss_pred HHHHHHHHHhccCccccccccccceeeeccccCcccceecccCC----chhhHHHHHHHHHhcCCcEEEEECCHHHHHHH
Confidence 9999999999887531 1 111222 35789999999999999999999999999999
Q ss_pred HHHHHHcCCccCCeEEEEeCccccccCCCCCChhhhhhccceEEEEEccCCchhHHHHHHHHhhhcCCCCCCCchhhhhh
Q 006567 240 FSVAKYLGMMGNGYVWIATDWLAYMLDSASLPSETLESMQGVLVLRQHIPESDRKKNFLSRWKNLTGGSLGMNSYGLYAY 319 (640)
Q Consensus 240 l~~a~~~gl~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~y 319 (640)
+++|+++||++.+|+||+++.+... ....+...|+++++.+.+.. .++.+|
T Consensus 232 ~~~a~~~g~~~~~~~~i~~~~~~~~-------~~~~~~~~g~lg~~~~~~~~----------------------~~~~~Y 282 (384)
T 3qek_A 232 YKSAAMLDMTGAGYVWLVGEREISG-------SALRYAPDGIIGLQLINGKN----------------------ESAHIS 282 (384)
T ss_dssp HHHHHHTTCSSTTCEEECCSGGGSG-------GGGSSCCTTCEEEEETTTTC----------------------HHHHHH
T ss_pred HHHHHHcCCccCCeEEEEecccccc-------ccccccCCccEEEEEcCCCc----------------------hhHHHH
Confidence 9999999999888999999986532 12335678999999865432 367899
Q ss_pred hHHHHHHHHHHHHhhcCCcccccCCccccccCCCCcccC-cccccCchHHHHHHHHhCcc-cccccceEEccCCCccccc
Q 006567 320 DSVWLLAHAIESFFNQGGKISFSNDSRLKTMEGGNLHLG-AMSIFDDGMLLLGNILQSNL-VGLTGPLKFNSDRSLIHAA 397 (640)
Q Consensus 320 Dav~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~c~-~~~~~~~g~~l~~~l~~~~f-~g~tG~v~Fd~~g~r~~~~ 397 (640)
|||+++++|++++..+... ......|. ...+|+.+..|.+++++++| +|++|++.||++|+|....
T Consensus 283 dAV~~~a~Al~~~~~~~~~------------~~~~~~c~~~~~~~~~~~~l~~~~~~~~f~~G~~G~v~fd~~G~~~~~~ 350 (384)
T 3qek_A 283 DAVAVVAQAIHELFEMENI------------TDPPRGCVGNTNIWKTGPLFKRVLMSSKYPDGVTGRIEFNEDGDRKFAQ 350 (384)
T ss_dssp HHHHHHHHHHHHHHTSSSC------------CCCCSCCTTCCCCCTTHHHHHHHHHTCCEEEETTEEECBCTTSCBCSCC
T ss_pred HHHHHHHHHHHHHHhccCC------------CCCCCccccCCCccccHHHHHHHHhcCCccCCCCcceEECCCCCCCccc
Confidence 9999999999999765421 11223353 45688889999999999998 9999999999999987899
Q ss_pred EEEEEEecccEEEEEEEeC
Q 006567 398 YDIINVIGTGFRMIGYWSN 416 (640)
Q Consensus 398 ~~I~~~~~~~~~~vG~w~~ 416 (640)
|+|++++++++++||.|+.
T Consensus 351 ~~I~~~~~~~~~~VG~w~~ 369 (384)
T 3qek_A 351 YSIMNLQNRKLVQVGIFNG 369 (384)
T ss_dssp EEEEEEETTEEEEEEEECS
T ss_pred EEEEEEcCCceEEEEEEeC
Confidence 9999999999999999984
No 11
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A*
Probab=100.00 E-value=1.3e-46 Score=398.60 Aligned_cols=358 Identities=20% Similarity=0.254 Sum_probs=300.3
Q ss_pred eeEEEEEEeecCC---ccchHHHH-HHHHHHHHHhccCCCCCCcEEEEEEccC-----CCChHHHHHHHHHhHh-cCcEE
Q 006567 30 AVVNVGALFTLDS---TIGRVAKI-AIEEAVKDVNSNSSILHGTKLNITMQSS-----NCSGFIGMVEALRFME-TDIVA 99 (640)
Q Consensus 30 ~~i~IG~l~~~~~---~~g~~~~~-a~~~Av~~iN~~~~~l~g~~i~~~~~D~-----~~~~~~a~~~a~~l~~-~~v~a 99 (640)
++|+||+++|++. ..|..... |+++|+|+||+++++|+|++|+++++|+ +|++..++..+.+++. ++|.+
T Consensus 1 g~i~IG~l~p~sg~~~~~g~~~~~~a~~~Av~~iN~~ggil~g~~l~~~~~D~~~~p~~c~~~~a~~~a~~~l~~~~v~a 80 (435)
T 1dp4_A 1 SDLTVAVVLPLTNTSYPWSWARVGPAVELALARVKARPDLLPGWTVRMVLGSSENAAGVCSDTAAPLAAVDLKWEHSPAV 80 (435)
T ss_dssp CEEEEEEEECSSCCCSTTCHHHHHHHHHHHHHHHHTCTTSSTTCEEEEEEEECBCTTSSBCTTHHHHHHHHHHHHHCCSE
T ss_pred CceEEEEEccCcCCCCceeHHHHHHHHHHHHHHHHhCCCCCCCceEEEEEecCcCcccccchhhHHHHHHHHHHhcCceE
Confidence 4799999999983 45666666 9999999999999999999999999999 5666678878877774 59999
Q ss_pred EEcCCChHHHHHHHHhhccCCceEEecccCCCCCCC-CCCCcEEEecCCchHHHHHHHHHHHhcCCcEEEEE------EE
Q 006567 100 IIGPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSS-LQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVI------FV 172 (640)
Q Consensus 100 iiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~l~~-~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii------~~ 172 (640)
||||.+|..+.++++++..+++|+|+++++++.+++ ..||++||+.|++..++.++++++++++|++|++| ++
T Consensus 81 viG~~~S~~~~av~~~~~~~~ip~is~~~~~~~ls~~~~~~~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~d~~~~ 160 (435)
T 1dp4_A 81 FLGPGCVYSAAPVGRFTAHWRVPLLTAGAPALGIGVKDEYALTTRTGPSHVKLGDFVTALHRRLGWEHQALVLYADRLGD 160 (435)
T ss_dssp EECCCSHHHHHHHHHHHHHHTCCEEESCCCCGGGGCTTTSTTEEECSCCHHHHHHHHHHHHHHHTCCSEEEEEEECCSSS
T ss_pred EECCCChHHHHHHHHHHHhcCCcEEcccccccccCcccccCeEEEecCcHHHHHHHHHHHHHHCCCcEEEEEEEccCCCC
Confidence 999999999999999999999999999999999988 45999999999999999999999999999999999 55
Q ss_pred cCCCCcccHHHHHHHHhh-cCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecChhhHHHHHHHHHHcCCccC
Q 006567 173 DNEYGRNGVSALNDKLAE-RRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGN 251 (640)
Q Consensus 173 ~~~~g~~~~~~~~~~~~~-~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~il~~a~~~gl~~~ 251 (640)
++++| ...+.+.+.+.+ .|++|.....++.. ..++..+++++++ ++|+|++++...++..++++|+++|+..+
T Consensus 161 ~~~~g-~~~~~~~~~~~~~~g~~v~~~~~~~~~----~~d~~~~l~~i~~-~~~viv~~~~~~~~~~~~~~a~~~g~~~~ 234 (435)
T 1dp4_A 161 DRPCF-FIVEGLYMRVRERLNITVNHQEFVEGD----PDHYPKLLRAVRR-KGRVIYICSSPDAFRNLMLLALNAGLTGE 234 (435)
T ss_dssp CCHHH-HHHHHHHHHHHHHHCCEEEEEEECTTC----GGGHHHHHHHHHH-HCSEEEEESCHHHHHHHHHHHHHTTCCTT
T ss_pred cchHH-HHHHHHHHHHHhhcCeEEEEEEEecCc----hhhHHHHHHHHHh-hCceEEEecChHHHHHHHHHHHHcCCCCC
Confidence 66677 566778888887 89999887765433 7789999999998 89999999999999999999999999877
Q ss_pred CeEEEEeCccccccC--------C-----CCCChhhhhhccceEEEEEccCCchhHHHHHHHHhhhcCC-------CCCC
Q 006567 252 GYVWIATDWLAYMLD--------S-----ASLPSETLESMQGVLVLRQHIPESDRKKNFLSRWKNLTGG-------SLGM 311 (640)
Q Consensus 252 ~~~~i~~~~~~~~~~--------~-----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~-------~~~~ 311 (640)
+++||+++.+..... . ....+...++.+|++.+.+..|.++.+++|.++|++.++. ...+
T Consensus 235 ~~~~i~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 314 (435)
T 1dp4_A 235 DYVFFHLDVFGQSLKSAQGLVPQKPWERGDGQDRSARQAFQAAKIITYKEPDNPEYLEFLKQLKLLADKKFNFTVEDGLK 314 (435)
T ss_dssp TCEEEEECTTCTTSCSSCTTSCBCTTCCSSSCHHHHHHHGGGEEEEEECCCCSHHHHHHHHHHHHHHHHHHCCCCCCSGG
T ss_pred CEEEEEEecccccccccccccccCCcccCCcchHHHHHHhheeEEEecCCCCChhHHHHHHHHHHHhcCCCCcccccchh
Confidence 799999987654310 0 0001234457889988888778888899999998776521 1125
Q ss_pred CchhhhhhhHHHHHHHHHHHHhhcCCcccccCCccccccCCCCcccCcccccCchHHHHHHHHhCcccccccceEEccCC
Q 006567 312 NSYGLYAYDSVWLLAHAIESFFNQGGKISFSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLTGPLKFNSDR 391 (640)
Q Consensus 312 ~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~g~tG~v~Fd~~g 391 (640)
+.+++++||||+++++|++++...+.. +.++..|+++|++++|+|++|++.||++|
T Consensus 315 ~~~~~~~ydav~~~a~Al~~~~~~~~~------------------------~~~~~~l~~~l~~~~f~g~~G~v~fd~~g 370 (435)
T 1dp4_A 315 NIIPASFHDGLLLYVQAVTETLAQGGT------------------------VTDGENITQRMWNRSFQGVTGYLKIDRNG 370 (435)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHTTCC------------------------TTCHHHHHHTTTTEEEEETTEEEEECTTS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCC------------------------CCCHHHHHHHHhCceeeccceeEEECCCC
Confidence 678899999999999999998654321 12488999999999999999999999999
Q ss_pred CcccccEEEEEE--ecccEEEEEEEeCCC
Q 006567 392 SLIHAAYDIINV--IGTGFRMIGYWSNYS 418 (640)
Q Consensus 392 ~r~~~~~~I~~~--~~~~~~~vG~w~~~~ 418 (640)
+|. ..|.|+++ .++.+++||.|++..
T Consensus 371 ~~~-~~~~i~~~~~~~g~~~~vg~~~~~~ 398 (435)
T 1dp4_A 371 DRD-TDFSLWDMDPETGAFRVVLNYNGTS 398 (435)
T ss_dssp BBC-CCEEEEEECTTTCCEEEEEEECTTT
T ss_pred Ccc-ceeEEEEecCCCCcEEEEEEecCCC
Confidence 975 79999999 556799999999765
No 12
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=100.00 E-value=9.5e-46 Score=402.49 Aligned_cols=389 Identities=21% Similarity=0.340 Sum_probs=317.7
Q ss_pred CCCeeEEEEEEeecCC-------------ccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhH
Q 006567 27 ARPAVVNVGALFTLDS-------------TIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFM 93 (640)
Q Consensus 27 ~~~~~i~IG~l~~~~~-------------~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~ 93 (640)
..+++|+||+++|++. ..|.+...|+++|+|+||+++++|||++|+++++|+++++..|++.+.+++
T Consensus 10 ~~~g~i~IG~l~pl~g~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~llpg~~L~~~i~D~~~~~~~a~~~a~~~l 89 (555)
T 2e4u_A 10 KIEGDLVLGGLFPINEKGTGTEECGRINEDRGIQRLEAMLFAIDEINKDNYLLPGVKLGVHILDTCSRDTYALEQSLEFV 89 (555)
T ss_dssp EECCSEEEEEEECCEEECCTTCSEEEECTTTTHHHHHHHHHHHHHHHHCTTSSTTCCEEEEEEECTTCHHHHHHHHHHHH
T ss_pred ecCCCEEEEEEEEeeECCCCCCccccccchhhhHHHHHHHHHHHHHhCCCCCCCCCeEEEEEEECCCChHHHHHHHHHHH
Confidence 3567899999999973 356788899999999999999999999999999999999999999988877
Q ss_pred h-------------------------cCcEEEEcCCChHHHHHHHHhhccCCceEEecccCCCCCCC-CCCCcEEEecCC
Q 006567 94 E-------------------------TDIVAIIGPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSS-LQYPFFVRTTQS 147 (640)
Q Consensus 94 ~-------------------------~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~l~~-~~~~~~~r~~p~ 147 (640)
+ ++|.|||||.+|..+.++++++..+++|+|+++++++.+++ ..||++||+.|+
T Consensus 90 ~~~~~~~~~~ny~C~~~~~~~~~~~~~~v~aviG~~~S~~s~~va~~~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~p~ 169 (555)
T 2e4u_A 90 RASLTKVDEAEYMCPDGSYAIQENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPP 169 (555)
T ss_dssp HTTC--------------------CCCCEEEEEECSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTCTTEEESSCC
T ss_pred hCcCcccCCCCcccCCCccccccccCCceEEEECCCCcHHHHHHHHHHhCcCCceEeCCcCCCccCCcccCCCceeeCCC
Confidence 3 48999999999999999999999999999999999999998 479999999999
Q ss_pred chHHHHHHHHHHHhcCCcEEEEEEEcCCCCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhc-CCceE
Q 006567 148 DSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVAL-MESRV 226 (640)
Q Consensus 148 ~~~~~~al~~ll~~~~w~~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~v 226 (640)
+..++.++++++++|||++|++|++|++||....+.+++.+++.|++|+....++.. ....++..++.++++ +++++
T Consensus 170 d~~~~~a~~~ll~~fgw~~V~ii~~d~~~g~~~~~~~~~~~~~~gi~v~~~~~~~~~--~~~~~~~~~l~~i~~~s~a~v 247 (555)
T 2e4u_A 170 DFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIEAFEQEARLRNICIATAEKVGRS--NIRKSYDSVIRELLQKPNARV 247 (555)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEESSTTHHHHHHHHHHHHHTTTCEEEEEEEECTT--CCHHHHHHHHHHHHTCTTCCE
T ss_pred hHHHHHHHHHHHHHcCCeEEEEEEeeChHHHHHHHHHHHHHHHCCccEEEEEEeCCC--CChHHHHHHHHHHhccCCCCE
Confidence 999999999999999999999999999999999999999999999999988888753 347889999999964 79999
Q ss_pred EEEecChhhHHHHHHHHHHcCCccCCeEEEEeCccccccCCCCCChhhhhhccceEEEEEccCCchhHHH----------
Q 006567 227 IVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAYMLDSASLPSETLESMQGVLVLRQHIPESDRKKN---------- 296 (640)
Q Consensus 227 ivl~~~~~~~~~il~~a~~~gl~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---------- 296 (640)
||+++...++..+++++.++|+ +++||+++.|...... .......+.|.+++.++..+.+.+++
T Consensus 248 Ii~~~~~~~~~~~~~~~~~~g~---~~~~i~s~~~~~~~~~---~~~~~~~~~G~l~~~~~~~~ipgf~~f~~~~~p~~~ 321 (555)
T 2e4u_A 248 VVLFMRSDDSRELIAAANRVNA---SFTWVASDGWGAQESI---VKGSEHVAYGAITLELASHPVRQFDRYFQSLNPYNN 321 (555)
T ss_dssp EEEECCHHHHHHHHHHHHHTTC---CCEEEECTTTTTCGGG---TTTCHHHHTTCEEEEECCCCCHHHHHHHHTCCTTTC
T ss_pred EEEEcCHHHHHHHHHHHHHhcC---CeEEEEeccccccchh---hccchhhcceEEEEEeccCCCCcHHHHHhhCCcccC
Confidence 9999999999999999999987 6899999887653221 01123567899999887655555444
Q ss_pred -----HHHHHhhhcCCCC---------------------CCCchhhhhhhHHHHHHHHHHHHhhcCCcccccCCcccccc
Q 006567 297 -----FLSRWKNLTGGSL---------------------GMNSYGLYAYDSVWLLAHAIESFFNQGGKISFSNDSRLKTM 350 (640)
Q Consensus 297 -----f~~~~~~~~~~~~---------------------~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~~~~~~~~ 350 (640)
|.+.|+..|+... .+..+++.+||||+++|+||+++......
T Consensus 322 p~~~~~~~~w~~~f~c~~~~~~~~~~~C~~~e~l~~~~~~~~~~~~~~YdAVya~A~AL~~~~~~~~~------------ 389 (555)
T 2e4u_A 322 HRNPWFRDFWEQKFQCSLQNKRNHRQVCDKHLAIDSSNYEQESKIMFVVNAVYAMAHALHKMQRTLCP------------ 389 (555)
T ss_dssp TTCTTHHHHHHHHTTCCCC------CCCCTTCCCCTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHCT------------
T ss_pred CCCHHHHHHHHHHcCCCCCCCCccCCCCCCccccccccccccccchhhHHHHHHHHHHHHHHHhhhcC------------
Confidence 4445665553110 13457889999999999999998753110
Q ss_pred CCCCcccCcccccCchHHHHH-HHHhCccc------ccccc-eEEccCCCcccccEEEEEEe--cc--cEEEEEEEeCCC
Q 006567 351 EGGNLHLGAMSIFDDGMLLLG-NILQSNLV------GLTGP-LKFNSDRSLIHAAYDIINVI--GT--GFRMIGYWSNYS 418 (640)
Q Consensus 351 ~~~~~~c~~~~~~~~g~~l~~-~l~~~~f~------g~tG~-v~Fd~~g~r~~~~~~I~~~~--~~--~~~~vG~w~~~~ 418 (640)
.....|..... .++.+|.+ +|++++|. |.+|. |.||++|++ ...|+|++++ ++ .+++||.|++
T Consensus 390 -~~~~~~~~~~~-~~~~~l~~~~L~~v~f~~~~~~~g~~G~~v~fd~~Gd~-~~~y~I~~~~~~~g~~~~~~VG~~~~-- 464 (555)
T 2e4u_A 390 -QTTKLCDAMKI-LDGKKLYKEYLLKIQFTAPFNPNKGADSIVKFDTFGDG-MGRYNVFNLQQTGGKYSYLKVGHWAE-- 464 (555)
T ss_dssp -TCSSCCGGGTS-CCHHHHHHHHTTCEEECCSSSCCSSSCCEEECCTTSCC-CCCEEEEEEECTTSSCEEEEEEEESS--
T ss_pred -CCCccccccCC-CCcccccHHhHhceeecccccccCCCCCeEEEcCCCCc-cceEEEEEEEecCCcEEEEEEEEecc--
Confidence 00112433222 24889999 99999999 99997 999999997 4889999996 23 4799999984
Q ss_pred CCCcCCCcccccCCCCCCCccccceeEEeCCCCCCCCCceee
Q 006567 419 GLSKEPPETLYAQPFNRSSTIQHLHSVIWPGETLSKPRGWVF 460 (640)
Q Consensus 419 ~l~~~~~~~~~~~~~~~~~~~~~~~~i~w~~~~~~~p~~~~~ 460 (640)
+|.+ +...|.|++ .++|.+.|.
T Consensus 465 ~l~i------------------~~~~I~W~~--~~~P~S~CS 486 (555)
T 2e4u_A 465 TLSL------------------DVDSIHWSR--NSVPTSQCS 486 (555)
T ss_dssp SEEC------------------CGGGCCCTT--SSCCCCCSS
T ss_pred eEEE------------------eccccccCC--CCCcceeeC
Confidence 3322 235789987 578988873
No 13
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=100.00 E-value=6.6e-46 Score=395.06 Aligned_cols=366 Identities=20% Similarity=0.344 Sum_probs=304.4
Q ss_pred CCCeeEEEEEEeecC------------C-ccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhH
Q 006567 27 ARPAVVNVGALFTLD------------S-TIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFM 93 (640)
Q Consensus 27 ~~~~~i~IG~l~~~~------------~-~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~ 93 (640)
..+++|.||++||.| . ..|.+...|+++|+|+||+++++|||++|+++++|+|+++..|++++.+++
T Consensus 9 ~~~GDi~iGglf~l~~~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~lLpg~~L~~~i~D~~~~~~~a~~~~~~ll 88 (479)
T 3sm9_A 9 KIEGDLVLGGLFPINEKGTGTEECGRINEDRGIQRLEAMLFAIDEINKDDYLLPGVKLGVHILDTCSRDTYALEQSLEFV 88 (479)
T ss_dssp EECCSEEEEEEECCEEECC-CCSEEEECTTTTHHHHHHHHHHHHHHHHCSSSSTTCCEEEEEEECTTCHHHHHHHHHHHH
T ss_pred ccCCCEEEEEEEEeEECCCCCCCCcccchhhhHHHHHHHHHHHHHHhCCCccCCCCeEeEEEEecCCChHHHHHHHHHHH
Confidence 457899999999996 1 156788999999999999999999999999999999999999999999998
Q ss_pred hc-------------------------CcEEEEcCCChHHHHHHHHhhccCCceEEecccCCCCCCC-CCCCcEEEecCC
Q 006567 94 ET-------------------------DIVAIIGPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSS-LQYPFFVRTTQS 147 (640)
Q Consensus 94 ~~-------------------------~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~l~~-~~~~~~~r~~p~ 147 (640)
++ +|.|||||.+|..+.++++++..+++|+|+++++++.+++ ..||++||+.|+
T Consensus 89 ~~~~~~~~~pny~C~~~~~~~~~~~~~~v~aviG~~~S~~s~ava~i~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~ps 168 (479)
T 3sm9_A 89 RASLTKVDEAEYMCPDGSYAIQENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPP 168 (479)
T ss_dssp HTCC-----------------------CEEEEECCSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTTTTEEESSCC
T ss_pred hCCCccCCCCCCccCCCCccccccCCCceEEEECCCCcHHHHHHHHHHhcCCccEECCCcCCccccCcccCCCeEEeCCc
Confidence 74 5999999999999999999999999999999999999998 469999999999
Q ss_pred chHHHHHHHHHHHhcCCcEEEEEEEcCCCCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHH-HHHhcCCceE
Q 006567 148 DSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLL-VKVALMESRV 226 (640)
Q Consensus 148 ~~~~~~al~~ll~~~~w~~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l-~~l~~~~~~v 226 (640)
+..++.+++++++++||++|++|++|++||....+.+++.+++.|+||+..+.++.. ....++...+ +.++++++++
T Consensus 169 d~~~~~a~~~ll~~fgw~~V~ii~~dd~~G~~~~~~~~~~~~~~Gi~v~~~~~i~~~--~~~~d~~~~l~~~i~~s~a~v 246 (479)
T 3sm9_A 169 DFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIEAFEQEARLRNISIATAEKVGRS--NIRKSYDSVIRELLQKPNARV 246 (479)
T ss_dssp THHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHTTTCEEEEEEEECC----CHHHHHHHHHHHHTCTTCCE
T ss_pred HHHHHHHHHHHHHHCCCeEEEEEEecchhhHHHHHHHHHHHHHCCceEEEEEEcCCC--CChHHHHHHHHHHHhcCCCeE
Confidence 999999999999999999999999999999999999999999999999998888764 3467889888 6788899999
Q ss_pred EEEecChhhHHHHHHHHHHcCCccCCeEEEEeCccccccCCCCCChhhhhhccceEEEEEccCCchhHHHHHHH------
Q 006567 227 IVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAYMLDSASLPSETLESMQGVLVLRQHIPESDRKKNFLSR------ 300 (640)
Q Consensus 227 ivl~~~~~~~~~il~~a~~~gl~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~------ 300 (640)
||++++..++..++++++++|+. ++||+++.|....... ......+.|++++.++..+.+.+++|...
T Consensus 247 Ii~~~~~~~~~~l~~~~~~~g~~---~~wI~s~~w~~~~~~~---~~~~~~~~G~l~~~~~~~~ipgf~~fl~~~~p~~~ 320 (479)
T 3sm9_A 247 VVLFMRSDDSRELIAAASRANAS---FTWVASDGWGAQESII---KGSEHVAYGAITLELASQPVRQFDRYFQSLNPYNN 320 (479)
T ss_dssp EEEECCHHHHHHHHHHHHHTTCC---CEEEECTTTTTCHHHH---TTCTTTTTTCEEEEECCCCCHHHHHHHHTCCTTTC
T ss_pred EEEEcChHHHHHHHHHHHHhCCE---EEEEEechhhcCcccc---ccccccCceEEEEEeccCCCcchhhHhhccCcCcC
Confidence 99999999999999999999986 7999999886531110 01124678999999999888888887654
Q ss_pred ---------HhhhcCC--------------CC-------CCCchhhhhhhHHHHHHHHHHHHhhcCCcccccCCcccccc
Q 006567 301 ---------WKNLTGG--------------SL-------GMNSYGLYAYDSVWLLAHAIESFFNQGGKISFSNDSRLKTM 350 (640)
Q Consensus 301 ---------~~~~~~~--------------~~-------~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~~~~~~~~ 350 (640)
|+..++. +. ........+||||+++|+|||+++.+.+.
T Consensus 321 p~d~~~~~~w~~~f~C~~~~~~~~~~~C~~~~~l~~~~~~~~~~~~~vy~AVyavA~ALh~m~~~~~~------------ 388 (479)
T 3sm9_A 321 HRNPWFRDFWEQKFQCSLQNKRNHRRVCDKHLAIDSSNYEQESKIMFVVNAVYAMAHALHKMQRTLCP------------ 388 (479)
T ss_dssp TTCTTHHHHHHHHHTCBCCC---CSCBCCTTCCCCTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHST------------
T ss_pred CCCHHHHHHHHHHcCCCCCCCcccccCCCCccccccCccccccchhhHHHHHHHHHHHHHHHHHhhcC------------
Confidence 3333320 00 01123468999999999999999763211
Q ss_pred CCCCcccCcccccCchHHHH-HHHHhCccccc------cc-ceEEccCCCcccccEEEEEEec----ccEEEEEEEe
Q 006567 351 EGGNLHLGAMSIFDDGMLLL-GNILQSNLVGL------TG-PLKFNSDRSLIHAAYDIINVIG----TGFRMIGYWS 415 (640)
Q Consensus 351 ~~~~~~c~~~~~~~~g~~l~-~~l~~~~f~g~------tG-~v~Fd~~g~r~~~~~~I~~~~~----~~~~~vG~w~ 415 (640)
.....|...... ++.+|. ++|++++|.+. +| ++.||++|++ ...|+|+|++. ..+++||.|+
T Consensus 389 -~~~~~c~~~~~~-~~~qL~~~~Lk~v~F~~~~~~~~~~g~~v~fd~~G~~-~~~YdI~n~~~~~~~~~~~~VG~~~ 462 (479)
T 3sm9_A 389 -NTTKLCDAMKIL-DGKKLYKDYLLKINFTAPFNPNKDADSIVKFDTFGDG-MGRYNVFNFQNVGGKYSYLKVGHWA 462 (479)
T ss_dssp -TCSSCCHHHHSC-CHHHHHHHTGGGCCEECTTC-----CCEECCCTTCBC-CCCEEEEEEEESSSCEEEEEEEEES
T ss_pred -CCCcCCCCCCCc-ChHHHHHHHhcceeeccccCccccCCCeEEECCCCCc-ccceEEEEEEECCCcEEEEEEEEEe
Confidence 111235443333 378999 99999999998 55 6999999996 68999999873 2468999997
No 14
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*
Probab=100.00 E-value=3.7e-45 Score=391.01 Aligned_cols=370 Identities=22% Similarity=0.370 Sum_probs=307.1
Q ss_pred cCCCeeEEEEEEeecCCc-----------------cchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHH
Q 006567 26 SARPAVVNVGALFTLDST-----------------IGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVE 88 (640)
Q Consensus 26 ~~~~~~i~IG~l~~~~~~-----------------~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~ 88 (640)
...+++|.||++||.|.. .|.+...|+.+|||+||+++++|||++|+++++|+|+++..|+++
T Consensus 12 ~~~~GDi~iGglf~vh~~~~~~~~~~~~c~~~~~~~g~~~~~a~~~AieeIN~~~~lLpn~tLg~~i~D~~~~~~~a~~~ 91 (496)
T 3ks9_A 12 ARMDGDVIIGALFSVHHQPPAEKVPERKCGEIREQYGIQRVEAMFHTLDKINADPVLLPNITLGSEIRDSCWHSSVALEQ 91 (496)
T ss_dssp EEECCSEEEEEEECSBCCCCGGGTTTTCCCCBCTTTTHHHHHHHHHHHHHHHTCSSSSTTCCEEEEEEECTTCHHHHHHH
T ss_pred eecCCCEEEEEEEEeEEcCccCCCCCCCCccccchhhHHHHHHHHHHHHHHhCCCCCCCCceEeEEEEEcCCCcHHHHHH
Confidence 456789999999998631 245678999999999999999999999999999999999999999
Q ss_pred HHHhH-----------------------------hcCcEEEEcCCChHHHHHHHHhhccCCceEEecccCCCCCCC-CCC
Q 006567 89 ALRFM-----------------------------ETDIVAIIGPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSS-LQY 138 (640)
Q Consensus 89 a~~l~-----------------------------~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~l~~-~~~ 138 (640)
+.+++ +++|.|||||.+|..+.++++++..+++|+|+++++++.+++ ..|
T Consensus 92 a~~ll~~~~~s~~~~~~~n~~C~~~~~~~~~~~~~~~v~aviG~~~S~~s~ava~i~~~~~iP~Is~~a~~~~lsd~~~~ 171 (496)
T 3ks9_A 92 SIEFIRDSLISIRDEKDGINRCLPDGQSLPPGRTKKPIAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSATSIDLSDKTLY 171 (496)
T ss_dssp HHHHHSTTC--------------------------CCEEEEECCSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTC
T ss_pred HHHHHHhhhccccccCCCCccccCcccccccccCCCceEEEECCCccHHHHHHHHHHhhcceeEECCCcCCccccCccCC
Confidence 99987 348999999999999999999999999999999999999998 569
Q ss_pred CcEEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCCCCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHH
Q 006567 139 PFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVK 218 (640)
Q Consensus 139 ~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~ 218 (640)
|++||+.|++..++.++++++++++|++|++|++|++||....+.+++.+++.|+||+..+.++.. ....++..++++
T Consensus 172 p~~frt~psd~~~~~ai~~ll~~fgw~~V~li~~dd~~G~~~~~~~~~~~~~~Gi~v~~~~~i~~~--~~~~d~~~~l~~ 249 (496)
T 3ks9_A 172 KYFLRVVPSDTLQARAMLDIVKRYNWTYVSAVHTEGNYGESGMDAFKELAAQEGLSIAHSDKIYSN--AGEKSFDRLLRK 249 (496)
T ss_dssp TTEEESSCCTHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTT--CCHHHHHHHHHH
T ss_pred CceEEecCChHHHHHHHHHHHHHcCCcEEEEEEeccHHHHHHHHHHHHHHHHcCceEEEEEEECCC--CCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999988877654 457899999999
Q ss_pred HhcC--CceEEEEecChhhHHHHHHHHHHcCCccCCeEEEEeCccccccCCCCCChhhhhhccceEEEEEccCCchhHHH
Q 006567 219 VALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAYMLDSASLPSETLESMQGVLVLRQHIPESDRKKN 296 (640)
Q Consensus 219 l~~~--~~~vivl~~~~~~~~~il~~a~~~gl~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 296 (640)
+++. ++++|+++++..++..+++++++.|+.. .+.||+++.|...... . ......+.|.+++.++.++.+.+++
T Consensus 250 i~~~~~~a~vii~~~~~~~~~~l~~~~~~~g~~~-k~~~i~s~~w~~~~~~--~-~~~~~~~~G~l~~~~~~~~ipgf~~ 325 (496)
T 3ks9_A 250 LRERLPKARVVVCFCEGMTVRGLLSAMRRLGVVG-EFSLIGSDGWADRDEV--I-EGYEVEANGGITIKLQSPEVRSFDD 325 (496)
T ss_dssp HHTTTTTTCEEEEECCHHHHHHHHHHHHHHTCCS-CCEEEECTTTTTCHHH--H-TTCHHHHTTCEEEEECCCCCHHHHH
T ss_pred HHhccCceEEEEEecChHHHHHHHHHHHHhCCCC-cEEEEEechhcccccc--c-cccccccCceEEEeccCCcCcchHh
Confidence 9985 8899999999999999999999999874 4689999888543211 0 1133568899999999999999988
Q ss_pred HHHH---------------HhhhcCC---C---------------CC------CCchhhhhhhHHHHHHHHHHHHhhcCC
Q 006567 297 FLSR---------------WKNLTGG---S---------------LG------MNSYGLYAYDSVWLLAHAIESFFNQGG 337 (640)
Q Consensus 297 f~~~---------------~~~~~~~---~---------------~~------~~~~~~~~yDav~~~a~Al~~~~~~~~ 337 (640)
|.+. |+..++. . .. .......+|+||+++|+|||+++.+.+
T Consensus 326 fl~~~~p~~~p~d~~l~~~W~~~f~C~~~~~~~~~~~~~~~C~~~~~l~~~~~~~~~~~~vy~AVyavAhALh~m~~~~~ 405 (496)
T 3ks9_A 326 YFLKLRLDTNTRNPWFPEFWQHRFQCRLPGHLLENPNFKRICTGNESLEENYVQDSKMGFVINAIYAMAHGLQNMHHALC 405 (496)
T ss_dssp HHTTCCTTTCCSCTTHHHHHHHHTTCBCCC-----CCCSSBCCSCCCTTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HhccCCcCCCCCCHHHHHHHHHHcCCCCCCCccccccccCCCCCcccccccccccchHHHHHHHHHHHHHHHHHHHhccC
Confidence 8754 3333320 0 00 011234699999999999999986422
Q ss_pred cccccCCccccccCCCCcccCcccccCchHHHHHHHHhCcccccccc-eEEccCCCcccccEEEEEEec-----ccEEEE
Q 006567 338 KISFSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLTGP-LKFNSDRSLIHAAYDIINVIG-----TGFRMI 411 (640)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~g~tG~-v~Fd~~g~r~~~~~~I~~~~~-----~~~~~v 411 (640)
. .....|.....+ ++.+|.++|++++|.+.+|+ |.||++|+. ...|+|+|++. ..+++|
T Consensus 406 ~-------------~~~~~c~~~~~~-~~~qL~~~Lk~v~f~~~~g~~v~fd~~gd~-~~~YdI~n~~~~~~~~~~~~~V 470 (496)
T 3ks9_A 406 P-------------GHVGLCDAMKPI-DGSKLLDFLIKSSFIGVSGEEVWFDEKGDA-PGRYDIMNLQYTEANRYDYVHV 470 (496)
T ss_dssp T-------------TCSSCCGGGSSC-CHHHHHHHHHTCEEECTTSCEEECCTTSCC-CCEEEEEEEEECC--CEEEEEE
T ss_pred C-------------CCCCCCcCCCCC-CHHHHHHHHHhcCCcCCCCCEEEECCCCCc-cceEEEEEEEECCCCCEEEEEE
Confidence 1 011235554445 38899999999999999995 999999995 58999999973 236899
Q ss_pred EEEeC
Q 006567 412 GYWSN 416 (640)
Q Consensus 412 G~w~~ 416 (640)
|.|+.
T Consensus 471 G~~~~ 475 (496)
T 3ks9_A 471 GTWHE 475 (496)
T ss_dssp EEEET
T ss_pred EEEeC
Confidence 99984
No 15
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} SCOP: c.93.1.0 PDB: 2e4z_A*
Probab=100.00 E-value=1.2e-45 Score=394.22 Aligned_cols=371 Identities=23% Similarity=0.383 Sum_probs=279.2
Q ss_pred cCCCeeEEEEEEeecCC-------------ccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHh
Q 006567 26 SARPAVVNVGALFTLDS-------------TIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRF 92 (640)
Q Consensus 26 ~~~~~~i~IG~l~~~~~-------------~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l 92 (640)
...+++|+||+++|++. ..|.+...|+++|+|+||+++++|||++|+++++|+|+++..|++.+.++
T Consensus 11 ~~~~gdi~IG~lf~l~~~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~lLpn~~L~~~i~D~~~~~~~a~~~a~~l 90 (481)
T 3mq4_A 11 IRIEGDVTLGGLFPVHAKGPSGVPCGDIKRENGIHRLEAMLYALDQINSDPNLLPNVTLGARILDTCSRDTYALEQSLTF 90 (481)
T ss_dssp EEECCSEEEEEEECSBCCC-----CCSBCTTTTHHHHHHHHHHHHHHTTCSSSSSSCCEEEEEEECTTCHHHHHHHHGGG
T ss_pred cccCCCEEEEEEEEceeCCCCCCCCccccchhhHHHHHHHHHHHHHHhCCCCcCCCceEEEEEEeCCCChHHHHHHHHHH
Confidence 34568899999999973 25778899999999999999999999999999999999999999999998
Q ss_pred Hh-----------------------cCcEEEEcCCChHHHHHHHHhhccCCceEEecccCCCCCCC-CCCCcEEEecCCc
Q 006567 93 ME-----------------------TDIVAIIGPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSS-LQYPFFVRTTQSD 148 (640)
Q Consensus 93 ~~-----------------------~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~l~~-~~~~~~~r~~p~~ 148 (640)
++ ++|.|||||.+|..+.+++++++.+++|+|+++++++.+++ ..||++||+.|++
T Consensus 91 l~~~~~~~~pny~C~~~~~~~~~~~~~v~aiiG~~~S~~s~ava~~~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~psd 170 (481)
T 3mq4_A 91 VQALIQKDTSDVRCTNGEPPVFVKPEKVVGVIGASGSSVSIMVANILRLFQIPQISYASTAPELSDDRRYDFFSRVVPPD 170 (481)
T ss_dssp GGGGSCCCC--------------CCCCEEEEECCSSHHHHHHHHHHHTTTTCCEEESSCCCGGGGCTTTTTTEEESSCCT
T ss_pred HhCCcccCCCCcccCCCCCcccccCCCcEEEEcCCCcHHHHHHHHHHHhCCCCEEccccCCccccCcccCCceEEecCch
Confidence 86 46999999999999999999999999999999999999998 5799999999999
Q ss_pred hHHHHHHHHHHHhcCCcEEEEEEEcCCCCcccHHHHHHHHhh-cCeEEEEeeccCCCCCCChhHHHHHHHHHh-cCCceE
Q 006567 149 SYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAE-RRCRISYKSGIPPESGVNTGYVMDLLVKVA-LMESRV 226 (640)
Q Consensus 149 ~~~~~al~~ll~~~~w~~v~ii~~~~~~g~~~~~~~~~~~~~-~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~-~~~~~v 226 (640)
..++.+++++++++||++|++|++|++||....+.+++.+++ .|+||+....++......+.++..++.+++ ++++++
T Consensus 171 ~~~~~a~~~ll~~fgw~~V~li~~d~~~G~~~~~~~~~~~~~~~Gi~va~~~~i~~~~~~~~~d~~~~l~~i~~~s~a~v 250 (481)
T 3mq4_A 171 SFQAQAMVDIVKALGWNYVSTLASEGSYGEKGVESFTQISKEAGGLSIAQSVRIPQERKDRTIDFDRIIKQLLDTPNSRA 250 (481)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEC---CHHHHHHHHHHHHCC---CCCEECCCCCCCCC------CCSHHHHCCCCC----C
T ss_pred HHHHHHHHHHHHHCCCeEEEEEEEcchhHHHHHHHHHHHHHHhCCEEEEEEEEcCCCCccchHHHHHHHHHHHhcCCCEE
Confidence 999999999999999999999999999999999999998875 799999887776541111227788899988 579999
Q ss_pred EEEecChhhHHHHHHHHHHcCCccCCeEEEEeCccccccCCCCCChhhhhhccceEEEEEccCCchhHHHHHHH------
Q 006567 227 IVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAYMLDSASLPSETLESMQGVLVLRQHIPESDRKKNFLSR------ 300 (640)
Q Consensus 227 ivl~~~~~~~~~il~~a~~~gl~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~------ 300 (640)
||++++..++..+++++++.|+.+ .++||+++.|...... . ......+.|.+++.++..+.+.+++|...
T Consensus 251 Ii~~~~~~~~~~l~~~~~~~g~~~-~~~wI~s~~w~~~~~~--~-~~~~~~~~G~l~~~~~~~~ipgf~~fl~~~~p~~~ 326 (481)
T 3mq4_A 251 VVIFANDEDIKQILAAAKRADQVG-HFLWVGSDSWGSKINP--L-HQHEDIAEGAITIQPKRATVEGFDAYFTSRTLENN 326 (481)
T ss_dssp EEECCCSSHHHHHC-----------CCCEEEC--------------------CCCEEEEECCCCCHHHHHHHHTCCTTTC
T ss_pred EEEEEChHHHHHHHHHHHHccCCc-ceEEEEECcccccccc--c-cccchhhccEEEEecCcCccccHHHHhhcCCcCcC
Confidence 999999999999999999999864 4899999988653222 1 12245688999999999888988888654
Q ss_pred ---------HhhhcCC------------------CCC--------CCchhhhhhhHHHHHHHHHHHHhhcCCcccccCCc
Q 006567 301 ---------WKNLTGG------------------SLG--------MNSYGLYAYDSVWLLAHAIESFFNQGGKISFSNDS 345 (640)
Q Consensus 301 ---------~~~~~~~------------------~~~--------~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~~~ 345 (640)
|+..++. +.. .......+||||+++|+|||+++.+.+..
T Consensus 327 p~d~~~~~~w~~~f~C~~~~~~~~~~~~~~~Ct~~e~l~~~~~~~~~~~~~~vy~AVyavA~ALh~m~~~~~~~------ 400 (481)
T 3mq4_A 327 RRNVWFAEYWEENFNCKLTISGSKKEDTDRKCTGQERIGKDSNYEQEGKVQFVIDAVYAMAHALHHMNKDLCAD------ 400 (481)
T ss_dssp TTCTTHHHHHHHHHTCCC------------CCCSCCCTTTSSCCCCCTTHHHHHHHHHHHHHHHHHHHHHHCC-------
T ss_pred CCCHHHHHHHHHhcCCCCCCccccccccCCCCCCccccCcCCcccccchhhhHHHHHHHHHHHHHHHHHhhCCC------
Confidence 3333320 000 01334569999999999999998642210
Q ss_pred cccccCCCCcccCcccccCchHHHHHHHHhCccccccc-ceEEccCCCcccccEEEEEEec-----ccEEEEEEEe
Q 006567 346 RLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLTG-PLKFNSDRSLIHAAYDIINVIG-----TGFRMIGYWS 415 (640)
Q Consensus 346 ~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~g~tG-~v~Fd~~g~r~~~~~~I~~~~~-----~~~~~vG~w~ 415 (640)
....|.....+ ++.+|.++|++++|.+.+| +|.||++|++ ...|+|+|++. ..+++||.|+
T Consensus 401 -------~~~~c~~~~~~-~~~qL~~~Lk~v~F~~~~G~~v~fd~~Gd~-~~~YdI~n~~~~~~~~~~~~~VG~~~ 467 (481)
T 3mq4_A 401 -------YRGVCPEMEQA-GGKKLLKYIRNVNFNGSAGTPVMFNKNGDA-PGRYDIFQYQTTNTSNPGYRLIGQWT 467 (481)
T ss_dssp ----------CCHHHHTS-CHHHHHHHHHTCEEECTTSSEEECCTTSCC-CCEEEEEEEC-----CCCEEEEEEEE
T ss_pred -------CCCCCCCCCCc-CHHHHHHHHhcceeecCCCCEEEECCCCCC-ceeEEEEEEEECCCCcEEEEEEEEEc
Confidence 11235544445 3889999999999999999 6999999995 58999999972 2568999998
No 16
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A*
Probab=100.00 E-value=4.9e-41 Score=344.45 Aligned_cols=339 Identities=15% Similarity=0.241 Sum_probs=260.9
Q ss_pred CeeEEEEEEeecCCccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEc-cCCCChHHHHHHHHHhHhc-CcEEEEc-CCC
Q 006567 29 PAVVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQ-SSNCSGFIGMVEALRFMET-DIVAIIG-PQC 105 (640)
Q Consensus 29 ~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~-D~~~~~~~a~~~a~~l~~~-~v~aiiG-p~~ 105 (640)
+..++||++|..+.. +.+++-|++..|.-. ..+++..+.. .+.+||..+..++|+++.. +|.|||| |.+
T Consensus 2 ~~~~~v~~~~~~~~~-----~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~dp~~~~~~~C~~l~~~~V~aiIgg~~s 73 (364)
T 3qel_B 2 PPSIGIAVILVGTSD-----EVAIKDAHEKDDFHH---LSVVPRVELVAMNETDPKSIITRICDLMSDRKIQGVVFADDT 73 (364)
T ss_dssp CCEEEEEEEEESSCC-----HHHHTC------------CCSEEEEEEEEECCCSHHHHHHHHHHHHHHSCEEEEEEEESS
T ss_pred CCceEEEEEEcccch-----hhhhccccCcccccc---CCccceEEEEEecCCCHHHHHHHHHHHHHhCCeEEEEecCCC
Confidence 456999999987652 889999999988543 2467777654 4678999999999999975 7988875 444
Q ss_pred hHHHHH--HHHhhccCCceEEecccCCC-CCCC-CCCCcEEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCCCCcccH
Q 006567 106 STVAHI--VSYVSNELQVPLLSFGVTDP-TLSS-LQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGV 181 (640)
Q Consensus 106 s~~~~~--v~~~~~~~~iP~is~~~~~~-~l~~-~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~~~~~g~~~~ 181 (640)
+..+.+ ++.+++.++||+|+++++++ .+++ ..||+++|+.|++..+++++++++++|||++|++||+|+ .+.
T Consensus 74 ~~~a~a~~v~~i~~~~~iP~IS~~at~~~~lsd~~~~p~f~Rt~psd~~q~~ai~~ll~~fgW~~V~iI~~d~----~g~ 149 (364)
T 3qel_B 74 DQEAIAQILDFISAQTLTPILGIHGGSSMIMADKDESSMFFQFGPSIEQQASVMLNIMEEYDWYIFSIVTTYF----PGY 149 (364)
T ss_dssp CCTHHHHHHHHHHHHHTCCEEEEEGGGGSCCSSCCTTCCEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESC----TTH
T ss_pred CchHHHHHHHHHHhccCCCEEEeecCCCCcCCCcccCceEEEcCCChHHHHHHHHHHHHHCCCeEEEEEEeCC----ccH
Confidence 443444 89999999999999999988 8988 569999999999999999999999999999999999874 345
Q ss_pred HHHHHHHhhc--C--eEEEEeeccCCCCCCChhHHHHHH-HHHhcCCceEEEEecChhhHHHHHHHHHHcCCccCCeEEE
Q 006567 182 SALNDKLAER--R--CRISYKSGIPPESGVNTGYVMDLL-VKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWI 256 (640)
Q Consensus 182 ~~~~~~~~~~--g--~~v~~~~~~~~~~~~~~~~~~~~l-~~l~~~~~~vivl~~~~~~~~~il~~a~~~gl~~~~~~~i 256 (640)
+.+.+.+++. | +|+.....++.. ....+++..+ ++++++++++||++|+.+.+..++++|.++||++++|+||
T Consensus 150 ~~~~~~l~~~~~~~~ici~~~~~i~~~--~~~~~~~~~l~~~i~~~~a~ViIv~~~~~~~~~ll~~a~~~g~~~~~y~wI 227 (364)
T 3qel_B 150 QDFVNKIRSTIENSFVGWELEEVLLLD--MSLDDGDSKIQNQLKKLQSPIILLYCTKEEATYIFEVANSVGLTGYGYTWI 227 (364)
T ss_dssp HHHHHHHHHHHHTCSSCCEEEEEEEEC--TTSCSSSCHHHHHHTTCCCSEEEEESCHHHHHHHHHHHHTTTCSSTTCEEE
T ss_pred HHHHHHHHHHhhccccceEEEEEEccC--CCcccHHHHHHHHHHccCCcEEEEEcCHHHHHHHHHHHHHcCCCCCCeEEE
Confidence 6666666554 4 376655544433 2244667778 6899999999999999999999999999999999999999
Q ss_pred EeCccccccCCCCCChhhhhhccceEEEEEccCCchhHHHHHHHHhhhcCCCCCCCchhhhhhhHHHHHHHHHHHHhhcC
Q 006567 257 ATDWLAYMLDSASLPSETLESMQGVLVLRQHIPESDRKKNFLSRWKNLTGGSLGMNSYGLYAYDSVWLLAHAIESFFNQG 336 (640)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~ 336 (640)
+++.+....+. .+ .....|++++++.. |+. .+.+++||||+++|+|++++.++.
T Consensus 228 ~t~~~~~~~~~--~~---~~~~~g~~~~~~~~------------W~~---------~~~~~~yDaV~~~A~A~~~~~~~~ 281 (364)
T 3qel_B 228 VPSLVAGDTDT--VP---SEFPTGLISVSYDE------------WDY---------GLPARVRDGIAIITTAASDMLSEH 281 (364)
T ss_dssp ECHHHHCSTTC--CC---TTSCTTCEECCBCT------------TTS---------CHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred EecccccCccc--cc---ccCCCceEEEeecc------------chh---------hHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99876433332 11 23567888877642 321 246789999999999999987654
Q ss_pred CcccccCCccccccCCCCcccCccc--ccCchHHHHHHHHhCcccccccceEEccCCCcccccEEEEEEe-cccEEEEEE
Q 006567 337 GKISFSNDSRLKTMEGGNLHLGAMS--IFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLIHAAYDIINVI-GTGFRMIGY 413 (640)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~c~~~~--~~~~g~~l~~~l~~~~f~g~tG~v~Fd~~g~r~~~~~~I~~~~-~~~~~~vG~ 413 (640)
... ......|.... +|.+|..|.++|++++|+|+ ++.||++|+|.++.|+|+|++ ++++++||.
T Consensus 282 ~~i-----------~~~~~~C~~~~~~~~~~G~~l~~~l~~v~f~Gl--~i~F~~~G~~~~~~~~Iinl~~~~~~~~VG~ 348 (364)
T 3qel_B 282 SFI-----------PEPKSSCYNTHEKRIYQSNMLNRYLINVTFEGR--DLSFSEDGYQMHPKLVIILLNKERKWERVGK 348 (364)
T ss_dssp SCC-----------CCCCSCSTTTTTGGGGCCSTTHHHHTCCEETTE--ECCBCTTSSBSSCCEEEEEECTTSCEEEEEE
T ss_pred CCC-----------CCCCCCCCCCCCCccCCHHHHHHHHhhceEeCc--eEEECCCCCcccceEEEEEEcCCCCcEEEEE
Confidence 322 12345676654 68899999999999999998 899999999999999999998 678999999
Q ss_pred EeCCCCCC
Q 006567 414 WSNYSGLS 421 (640)
Q Consensus 414 w~~~~~l~ 421 (640)
|+. .+|.
T Consensus 349 W~~-~~L~ 355 (364)
T 3qel_B 349 WKD-KSLQ 355 (364)
T ss_dssp ECS-SCEE
T ss_pred ECC-CeEE
Confidence 984 3444
No 17
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=100.00 E-value=1.2e-38 Score=332.01 Aligned_cols=355 Identities=13% Similarity=0.077 Sum_probs=297.3
Q ss_pred CeeEEEEEEeecCCc--cchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhc-CcEEEEcCCC
Q 006567 29 PAVVNVGALFTLDST--IGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMET-DIVAIIGPQC 105 (640)
Q Consensus 29 ~~~i~IG~l~~~~~~--~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~-~v~aiiGp~~ 105 (640)
+++|+||+++|++.. .|.....|+++|++++|+++++++|++|+++++|+++++..+.+.+++|+.+ +|.+||||.+
T Consensus 3 ~~~i~IG~~~p~sg~~~~g~~~~~g~~~a~~~iN~~ggi~Gg~~i~l~~~D~~~~~~~~~~~~~~li~~~~v~aiiG~~~ 82 (387)
T 3i45_A 3 LEAIRIGEINSYSQIPAFTLPYRNGWQLAVEQINAAGGLLGGRPLEVISRDDGGDPGKAVTAAQELLTRHGVHALAGTFL 82 (387)
T ss_dssp CCCEEEEEEECTTTCHHHHHHHHHHHHHHHHHHHHTTCBTTTBCEEEEEEECTTCHHHHHHHHHHHHHHHCCSEEEECCS
T ss_pred CCCEEEEEeecCCCchhhhHHHHHHHHHHHHHHHhcCCCCCCcceEEEEecCCCCHHHHHHHHHHHHHhcCCEEEECCcc
Confidence 468999999999863 4667899999999999999999755999999999999999999999999985 9999999999
Q ss_pred hHHHHHHHHhhccCCceEEecccCCCCCCC-CCCCcEEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCCCCcccHHHH
Q 006567 106 STVAHIVSYVSNELQVPLLSFGVTDPTLSS-LQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSAL 184 (640)
Q Consensus 106 s~~~~~v~~~~~~~~iP~is~~~~~~~l~~-~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~~~~~g~~~~~~~ 184 (640)
+..+.++.+++...+||+|++.+.++.++. ..++++||+.|++..++.++++++.+++|++|++|+++++||+...+.+
T Consensus 83 s~~~~a~~~~~~~~~ip~i~~~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~~~~g~~~~~~~ 162 (387)
T 3i45_A 83 SHVGLAVSDFARQRKVLFMASEPLTDALTWEKGNRYTYRLRPSTYMQAAMLAAEAAKLPITRWATIAPNYEYGQSAVARF 162 (387)
T ss_dssp HHHHHHHHHHHHHHTCCEEECSCCCGGGTTTTCCTTEEECSCCHHHHHHHHHHHHTTSSCCEEEEECCSSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCceEEecCCCchhhhhccCCCCEEEeCCChHHHHHHHHHHHHHcCCCeEEEEeCCchHhHHHHHHH
Confidence 999999999999999999998888877764 5689999999999999999999999999999999999999999999999
Q ss_pred HHHHhhc--CeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecChhhHHHHHHHHHHcCCccCCeEEEEeCccc
Q 006567 185 NDKLAER--RCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLA 262 (640)
Q Consensus 185 ~~~~~~~--g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~il~~a~~~gl~~~~~~~i~~~~~~ 262 (640)
++.+++. |+++.....++.+ ..++...+.++++.++++|++.+...++..+++++++.|+... +++.+....
T Consensus 163 ~~~l~~~~~g~~vv~~~~~~~~----~~d~~~~~~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~--~~i~~~~~~ 236 (387)
T 3i45_A 163 KELLLAARPEVTFVAEQWPALY----KLDAGPTVQALQQAEPEGLFNVLFGADLPKFVREGRVRGLFAG--RQVVSMLTG 236 (387)
T ss_dssp HHHHHHHCTTCEEEEEECCCTT----CCCHHHHHHHHHHTCCSEEEECCCTTHHHHHHHHHHHHTSSTT--CEEEEEEEE
T ss_pred HHHHHHhCCCcEEEeeecCCCC----CcCHHHHHHHHHhCCCCEEEEcCccHHHHHHHHHHHHcCCCCC--CeEEeecCC
Confidence 9999988 8998887777755 6689999999999999999999999999999999999998643 333332211
Q ss_pred cccCCCCCChhhhhhccceEEEEE-c-cCCchhHHHHHHHHhhhcCCCCCCCchhhhhhhHHHHHHHHHHHHhhcCCccc
Q 006567 263 YMLDSASLPSETLESMQGVLVLRQ-H-IPESDRKKNFLSRWKNLTGGSLGMNSYGLYAYDSVWLLAHAIESFFNQGGKIS 340 (640)
Q Consensus 263 ~~~~~~~~~~~~~~~~~g~~~~~~-~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~ 340 (640)
..... ........+|++.... + .++++..++|.++|++++ +..++.+++.+|||++++++|++++..
T Consensus 237 ~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~--~~~p~~~~~~~Yda~~~~a~Al~~ag~------ 305 (387)
T 3i45_A 237 EPEYL---NPLKDEAPEGWIVTGYPWYDIDTAPHRAFVEAYRARW--KEDPFVGSLVGYNTLTAMAVAFEKAGG------ 305 (387)
T ss_dssp SHHHH---GGGGGGCCSSCEEEECCGGGCCCHHHHHHHHHHHHHH--SSCCCHHHHHHHHHHHHHHHHHHHHTS------
T ss_pred ChHHH---HHhhhhccCceEEecccccCCCCHHHHHHHHHHHHHH--CCCCCcHHHHHHHHHHHHHHHHHHhCC------
Confidence 11000 0011134577665532 2 256788999999999998 456788999999999999999998621
Q ss_pred ccCCccccccCCCCcccCcccccCchHHHHHHHHhCcccccccceEEccCCCcccccEEEEEEe-cccEEEEEEEeCCCC
Q 006567 341 FSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLIHAAYDIINVI-GTGFRMIGYWSNYSG 419 (640)
Q Consensus 341 ~~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~g~tG~v~Fd~~g~r~~~~~~I~~~~-~~~~~~vG~w~~~~~ 419 (640)
.++..++++|++++|+|++|+++|++++++......|.+++ .++...++.|....|
T Consensus 306 -----------------------~~~~~v~~al~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~~~g~~~i~~w~~~~~ 362 (387)
T 3i45_A 306 -----------------------TESETLVETLKDMAFSTPMGPLSFRASDHQSTMGAWVGRTALRDGKGVMVDWRYVDG 362 (387)
T ss_dssp -----------------------CCHHHHHHHTTTCEEEETTEEEEBCTTTCBBCCCEEEEEEEEETTEEEEEEEEEECG
T ss_pred -----------------------CCHHHHHHHHhcCCCcCCCCCeEEcCCCCccccceeEEEEEeeCCceeEEeeEEeCc
Confidence 14899999999999999999999998655567788888876 567789999998776
Q ss_pred CCcC
Q 006567 420 LSKE 423 (640)
Q Consensus 420 l~~~ 423 (640)
....
T Consensus 363 ~~~~ 366 (387)
T 3i45_A 363 GSVL 366 (387)
T ss_dssp GGGS
T ss_pred hhcC
Confidence 5443
No 18
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=100.00 E-value=8.9e-39 Score=336.57 Aligned_cols=353 Identities=13% Similarity=0.054 Sum_probs=282.8
Q ss_pred CCCeeEEEEEEeecCCc---cchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCC-CChHHHHHHHHHhHh-cCcEEEE
Q 006567 27 ARPAVVNVGALFTLDST---IGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSN-CSGFIGMVEALRFME-TDIVAII 101 (640)
Q Consensus 27 ~~~~~i~IG~l~~~~~~---~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~-~~~~~a~~~a~~l~~-~~v~aii 101 (640)
..+++|+||+++|++.. .|.....|+++|+++||++++++ |++|+++++|++ +++..+...+++|+. ++|.+||
T Consensus 10 ~~~~~i~IG~~~plsG~~a~~g~~~~~g~~lA~~~iN~~ggi~-G~~i~l~~~D~~~~~~~~a~~~a~~li~~~~v~aii 88 (419)
T 3h5l_A 10 QSSDPVVIGCPAPLTGIVAADGIEFQRGIQMAADEINAVGGIL-GRPIELVFADTQSKGVDVVIQSAQRLIDRDNASALI 88 (419)
T ss_dssp ---CCEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHTTTSBT-TBCEEEEEEECTTCCHHHHHHHHHHHHHTTCCSEEE
T ss_pred ccCCCEEEEEeecCCCcccccCHHHHHHHHHHHHHHHhcCCcC-ceEEEEEEccCCCCCHHHHHHHHHHHhhhcCCeEEE
Confidence 34578999999999854 47888999999999999999985 899999999987 699999999999998 6999999
Q ss_pred cCCChHHHHHHHHhhccCCceEEecccCCCCCC-----C-CCCCcEEEecCCchHHHHHHHHHHHhc--------CCcEE
Q 006567 102 GPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLS-----S-LQYPFFVRTTQSDSYQMTAVAEMVSYY--------GWNAV 167 (640)
Q Consensus 102 Gp~~s~~~~~v~~~~~~~~iP~is~~~~~~~l~-----~-~~~~~~~r~~p~~~~~~~al~~ll~~~--------~w~~v 167 (640)
||.+|..+.++++++..++||+|+++ +.+.+. + ..|+++||+.|++..++.+++++++++ +|++|
T Consensus 89 G~~~s~~~~a~~~~~~~~~ip~i~~~-~~~~~~~~~~~~~~~~~~~f~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 167 (419)
T 3h5l_A 89 AGYNLENGTALHDVAADAGVIAMHAN-TVAVHDEMVKSDPDRYWGTFQYDPPETLYGGGFLKFLKDIEDNGEFSRPNNKI 167 (419)
T ss_dssp CSCCSSCSCHHHHHHHHHTCEEEECC-CCHHHHHHHHHCTTTCTTEEESSCCTHHHHHHHHHHHHHHHHTTSCCCSSSEE
T ss_pred ccccchhHHHhHHHHHHcCCeEEEcC-cchhhhhhhhcCcccCceEEEeCCchHHHHHHHHHHHHHHHhhccccCCCCEE
Confidence 99999999999999999999999863 333221 2 368999999999999999999999876 89999
Q ss_pred EEEEEcCCCCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecC-hhhHHHHHHHHHHc
Q 006567 168 SVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVS-PSLGFQVFSVAKYL 246 (640)
Q Consensus 168 ~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~-~~~~~~il~~a~~~ 246 (640)
++|+++++||....+.+++.+++.|++|.....++.+ ..++..++.++++.++|+|++.+. +.++..+++++++.
T Consensus 168 ail~~~~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~----~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~~ 243 (419)
T 3h5l_A 168 AIITGPGIYSVNIANAIRDGAGEYGYDVSLFETVAIP----VSDWGPTLAKLRADPPAVIVVTHFYPQDQALFMNQFMTD 243 (419)
T ss_dssp EEEECSSHHHHHHHHHHHHHGGGGTCEEEEEEECCSS----CSCCHHHHHHHHHSCCSEEEECCCCHHHHHHHHHHHTTS
T ss_pred EEEEcCcchhHHHHHHHHHHHHHcCCeEEEEecCCCC----CccHHHHHHHHHhcCCCEEEEccccCchHHHHHHHHHHc
Confidence 9999999999999999999999999999988888765 678999999999999999999865 57899999999999
Q ss_pred CCccCCeEEEEeCccccccCCCCCChhhhhhccceEEEEEc-cCCchhHHHHHHHHhhhcCCCCCCCchhhhhhhHHHHH
Q 006567 247 GMMGNGYVWIATDWLAYMLDSASLPSETLESMQGVLVLRQH-IPESDRKKNFLSRWKNLTGGSLGMNSYGLYAYDSVWLL 325 (640)
Q Consensus 247 gl~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~ 325 (640)
|+ ...|+.++.+..... ........+|++....+ .+.++..++|.++|+++++ ..+.+.+++.+|||++++
T Consensus 244 g~---~~~~~~~~~~~~~~~----~~~~g~~~~G~~~~~~~~~~~~~~~~~f~~~~~~~~g-~~p~~~~a~~~Yda~~~~ 315 (419)
T 3h5l_A 244 PT---NSLVYLQYGASLAAF----RDIAGDNSVGVTYATVLGTLQDEMGDAFAKAYKERYG-DLSSTASGCQTYSALYAY 315 (419)
T ss_dssp CC---SCEEEECSGGGSHHH----HHHHGGGGTTCEEEESSCCCSSHHHHHHHHHHHHHHC-TTSCHHHHHHHHHHHHHH
T ss_pred CC---CceEEecCCCCcHHH----HHhhhhhcCceEEeecCCCCCCHHHHHHHHHHHHHhC-CCCCcchhHHHHHHHHHH
Confidence 98 346777665532210 01223456787766543 3456789999999999983 333346899999999999
Q ss_pred HHHHHHHhhcCCcccccCCccccccCCCCcccCcccccCchHHHHHHHHhCcccccccceEEccCCCcc-----------
Q 006567 326 AHAIESFFNQGGKISFSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLI----------- 394 (640)
Q Consensus 326 a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~g~tG~v~Fd~~g~r~----------- 394 (640)
++|++++..... ...+.++..++++|++++|+|++|.++||++|++.
T Consensus 316 ~~a~~~a~~~~~----------------------~g~~~~~~~l~~al~~~~~~g~~G~i~f~~~g~~~~~~~~~~~~~~ 373 (419)
T 3h5l_A 316 SIAAALAGGPGA----------------------PYDDVQNKAVADRLRSLIFRGPVGTMRFHADTQSAWSYPTETNDPS 373 (419)
T ss_dssp HHHHHHTTSCCC----------------------TTCHHHHHHHHHHHHHCEEEETTEEEEBCTTTCBBCEETTTCSCTT
T ss_pred HHHHHHhcCCcc----------------------CCCccCHHHHHHHHHhCCcccCceEEEECCCCCccccccCccCCcc
Confidence 999998643111 01122588999999999999999999999999842
Q ss_pred -cccEEEEEEecccEEEEEEEe
Q 006567 395 -HAAYDIINVIGTGFRMIGYWS 415 (640)
Q Consensus 395 -~~~~~I~~~~~~~~~~vG~w~ 415 (640)
...+.|+++++++++.+-.|-
T Consensus 374 ~~~~~~i~q~q~g~~~~~~V~P 395 (419)
T 3h5l_A 374 LGMPHIFSQIFDKAEDGVLIAP 395 (419)
T ss_dssp SSEECEEEECCCTTSCCEEEES
T ss_pred ccCCceEEEeeCCceeeEEECC
Confidence 223456677766663333453
No 19
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=100.00 E-value=1.5e-37 Score=321.22 Aligned_cols=347 Identities=15% Similarity=0.178 Sum_probs=288.8
Q ss_pred CeeEEEEEEeecCC---ccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCC-ChHHHHHHHHHhHhc-CcEEEEcC
Q 006567 29 PAVVNVGALFTLDS---TIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNC-SGFIGMVEALRFMET-DIVAIIGP 103 (640)
Q Consensus 29 ~~~i~IG~l~~~~~---~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~-~~~~a~~~a~~l~~~-~v~aiiGp 103 (640)
.++|+||+++|++. ..|...+.|+++|++++| +++ .|++|+++++|+.+ +|..+...+.+|+.+ +|.+|+||
T Consensus 3 Ad~IkIG~~~plSG~~a~~G~~~~~g~~la~~~~n--ggi-~G~~ielv~~D~~~~~p~~a~~~a~~Li~~d~V~aiiG~ 79 (371)
T 4f06_A 3 ADTIKVGVIGTMSGPYALFGKNYKMGIDAWVAEHG--NKV-AGHTVEFVYRDEVSPNPAQSKALAQELIVKEKVQYLAGL 79 (371)
T ss_dssp -CEEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHC--SEE-TTEEEEEEEEECCSSCHHHHHHHHHHHHHTSCCSEEEEC
T ss_pred CCcEEEEEEeCCcCchHHhHHHHHHHHHHHHHHhC--CCC-CCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEEec
Confidence 47899999999984 457888999999999998 556 59999999999975 899999999999976 99999999
Q ss_pred CChHHHHHHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCCCCcccHHH
Q 006567 104 QCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSA 183 (640)
Q Consensus 104 ~~s~~~~~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~~~~~g~~~~~~ 183 (640)
.+|..+.++++++...++|+|+++++++.++.. .+|+||+.|++..++.++++++++.+|+++++|++++.||....+.
T Consensus 80 ~~S~~~~a~~~~~~~~~vp~i~~~a~~~~~~~~-~~~~fr~~~~~~~~~~~~~~~~~~~g~k~vaii~~~~~~g~~~~~~ 158 (371)
T 4f06_A 80 YFTPNAMAVAPLLQEAKVPMVVMNAATSSITEK-SPYIVRTSFTMFQNTVPAAKVAKQKGATKVAIAVSDYGPGIDAETA 158 (371)
T ss_dssp CSHHHHHHHGGGHHHHTCCEEESSCCCGGGGGG-CTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHH
T ss_pred ccccchHHHHHHHHhhcCCccccccccchhccc-CCcceecccchhhhhhhhhhhhhhcCceEEEEEcCCcccchhHHHH
Confidence 999999999999999999999998888877654 4899999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecC-hhhHHHHHHHHHHcCCccCCeEEEEeCccc
Q 006567 184 LNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVS-PSLGFQVFSVAKYLGMMGNGYVWIATDWLA 262 (640)
Q Consensus 184 ~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~-~~~~~~il~~a~~~gl~~~~~~~i~~~~~~ 262 (640)
+++.+++.|++|+....++.+ ..|++.++.++++.++|+|++... ..+...+++++++.|+....+.++.+....
T Consensus 159 ~~~~~~~~g~~vv~~~~~~~~----~~d~~~~l~~i~~~~pd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 234 (371)
T 4f06_A 159 FKKTFEAEGGKVVEAVRMPLS----TTDFGPIMQRIKNSGADMIFTFLPAGPPTLGFVKAYIDNGLKAGGVKLMSTGDVV 234 (371)
T ss_dssp HHHHHHHTTCEEEEEEEECTT----CCCCHHHHHHHHHHTCSEEEEECCTTHHHHHHHHHHHHTTTTTTTCEEEEEGGGG
T ss_pred HHHHHHhcCCceEEEEecCcc----cccHHHHHHHHHhcCCCEEEEEeccCchhhHHHHHHHHhhhhccCcEEEEecccC
Confidence 999999999999998888876 778999999999999999988754 467888999999999987666666655332
Q ss_pred cccCCCCCChhhhhhccceEEEEEccC--CchhHHHHHHHHhhhcCCCCCCCchhhhhhhHHHHHHHHHHHHhhcCCccc
Q 006567 263 YMLDSASLPSETLESMQGVLVLRQHIP--ESDRKKNFLSRWKNLTGGSLGMNSYGLYAYDSVWLLAHAIESFFNQGGKIS 340 (640)
Q Consensus 263 ~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~ 340 (640)
..... ........|++...++.+ .++..++|.++|+++++....++.++..+||+++++++|+++.. +.
T Consensus 235 ~~~~~----~~~~~~~~g~~~~~~~~~~~~~p~~~~f~~~~~~~~~~~~~~~~~a~~~Yda~~~l~~Ai~~~a---g~-- 305 (371)
T 4f06_A 235 TEPDL----PNIGEAGLGILSTYHYAVSHDSPENKAFLALLQKGGAKLDEVTMTSVAAYDGARLIYKMIEATS---GK-- 305 (371)
T ss_dssp CGGGH----HHHCGGGTTCEEEESCCTTCCSHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHHHHTT---TS--
T ss_pred CHHHH----HhcccccCceEEeeccccCCCChhHHHHHHHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHhc---CC--
Confidence 22111 123356677777766544 46788999999999884234577889999999999999998631 11
Q ss_pred ccCCccccccCCCCcccCcccccCchHHHHHHHHhCcccccccceEEccCCCcccccEEEEEEe--cccE--EEEEEEe
Q 006567 341 FSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLIHAAYDIINVI--GTGF--RMIGYWS 415 (640)
Q Consensus 341 ~~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~g~tG~v~Fd~~g~r~~~~~~I~~~~--~~~~--~~vG~w~ 415 (640)
.+++.++++|++++|+|++|+++||++++.....+.|.+++ ++++ +.+..+.
T Consensus 306 -----------------------~d~~~v~~al~~~~~~~~~G~i~fd~~~~~~~~~~~i~~v~~~dGk~v~~~~~~~~ 361 (371)
T 4f06_A 306 -----------------------SDPDKAIAAVKGMKWVSPRGEVSIDPETRHITQNVYLREVEKVDGKLINRELETFK 361 (371)
T ss_dssp -----------------------CCHHHHHHHHTTCEEEETTEEEEECTTTCBEEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred -----------------------CCHHHHHHHHhCCCeeCCcEEEEEcCCCCcccCCEEEEEEEecCCEEEEEEEEEEe
Confidence 14889999999999999999999998887666778888887 4554 3344443
No 20
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=100.00 E-value=2.2e-37 Score=318.72 Aligned_cols=344 Identities=16% Similarity=0.153 Sum_probs=292.4
Q ss_pred eeEEEEEEeecCC---ccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcCcEEEEcCCCh
Q 006567 30 AVVNVGALFTLDS---TIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCS 106 (640)
Q Consensus 30 ~~i~IG~l~~~~~---~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aiiGp~~s 106 (640)
++|+||+++|++. ..|.....|+++|++++|+++++ +|+++++++.|+++++..+.+.++++++++|.+||||.++
T Consensus 1 ~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~iN~~ggi-~G~~~~l~~~d~~~~~~~~~~~~~~l~~~~v~~iig~~~s 79 (356)
T 3ipc_A 1 MDVVIAVGAPLTGPNAAFGAQIQKGAEQAAKDINAAGGI-NGEQIKIVLGDDVSDPKQGISVANKFVADGVKFVVGHANS 79 (356)
T ss_dssp CCEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHHTTCB-TTBCEEEEEEECTTCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred CeEEEEEeeCCCCcchhhCHHHHHHHHHHHHHHHhcCCC-CCeEEEEEEecCCCCHHHHHHHHHHHHHCCCcEEEcCCCc
Confidence 3699999999974 35678899999999999999998 6999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHH-HhcCCcEEEEEEEcCCCCcccHHHHH
Q 006567 107 TVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMV-SYYGWNAVSVIFVDNEYGRNGVSALN 185 (640)
Q Consensus 107 ~~~~~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll-~~~~w~~v~ii~~~~~~g~~~~~~~~ 185 (640)
..+.++.+++...+||+|++.++++.+++..++++||+.|++..++.++++++ ++++|+++++|+.++.+|....+.++
T Consensus 80 ~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~~~~~~~~~~ 159 (356)
T 3ipc_A 80 GVSIPASEVYAENGILEITPAATNPVFTERGLWNTFRTCGRDDQQGGIAGKYLADHFKDAKVAIIHDKTPYGQGLADETK 159 (356)
T ss_dssp HHHHHHHHHHHTTTCEEEESSCCCGGGGSSCCTTEEESSCCHHHHHHHHHHHHHHHCTTCCEEEEECSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCeEEecCCCCcHhhcCCCCcEEEecCChHHHHHHHHHHHHHhcCCCEEEEEeCCChHHHHHHHHHH
Confidence 99999999999999999998888888877677999999999999999999965 55699999999998889999999999
Q ss_pred HHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecChhhHHHHHHHHHHcCCccCCeEEEEeCcccccc
Q 006567 186 DKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAYML 265 (640)
Q Consensus 186 ~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~il~~a~~~gl~~~~~~~i~~~~~~~~~ 265 (640)
+.+++.|+++.....++.+ ..++...++++++.++++|++++...++..+++++++.|+.. .|++++.+....
T Consensus 160 ~~l~~~g~~v~~~~~~~~~----~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~~~~~~ 232 (356)
T 3ipc_A 160 KAANAAGVTEVMYEGVNVG----DKDFSALISKMKEAGVSIIYWGGLHTEAGLIIRQAADQGLKA---KLVSGDGIVSNE 232 (356)
T ss_dssp HHHHHTTCCCSEEEECCTT----CCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHTCCC---EEEECGGGCSHH
T ss_pred HHHHHcCCEEEEEEeeCCC----CCCHHHHHHHHHhcCCCEEEEccCchHHHHHHHHHHHCCCCC---cEEEeccccCHH
Confidence 9999999998766666654 567888999999999999999999999999999999999864 366655433211
Q ss_pred CCCCCChhhhhhccceEEEEEccC-CchhHHHHHHHHhhhcCCCCCCCchhhhhhhHHHHHHHHHHHHhhcCCcccccCC
Q 006567 266 DSASLPSETLESMQGVLVLRQHIP-ESDRKKNFLSRWKNLTGGSLGMNSYGLYAYDSVWLLAHAIESFFNQGGKISFSND 344 (640)
Q Consensus 266 ~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~~ 344 (640)
. ........+|++...++.+ ..+..++|.++|+++ + ..|+.+++.+|||++++++|++++..
T Consensus 233 ~----~~~~g~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~-~--~~p~~~~~~~yda~~~~~~al~~ag~---------- 295 (356)
T 3ipc_A 233 L----ASIAGDAVEGTLNTFGPDPTLRPENKELVEKFKAA-G--FNPEAYTLYSYAAMQAIAGAAKAAGS---------- 295 (356)
T ss_dssp H----HHHHGGGGTTCEEEESCCGGGCGGGHHHHHHHHHT-T--CCCCTTHHHHHHHHHHHHHHHHHHTC----------
T ss_pred H----HHHhhHHhCCEEEEecCCCCCChhHHHHHHHHHHc-C--CCcchhHHHHHHHHHHHHHHHHHhCC----------
Confidence 0 0122345778777766554 467789999999887 2 45777999999999999999998621
Q ss_pred ccccccCCCCcccCcccccCchHHHHHHHHhCcccccccceEEccCCCcccccEEEEEEec---ccEEEEEEEeCC
Q 006567 345 SRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLIHAAYDIINVIG---TGFRMIGYWSNY 417 (640)
Q Consensus 345 ~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~g~tG~v~Fd~~g~r~~~~~~I~~~~~---~~~~~vG~w~~~ 417 (640)
.++..+.++|++.+|+|++|+++||++|++....+.|+++++ ++|+.+..|...
T Consensus 296 -------------------~~~~~~~~~l~~~~~~g~~G~~~f~~~g~~~~~~~~i~~~~~~~~G~~~~~~~~~~~ 352 (356)
T 3ipc_A 296 -------------------VEPEKVAEALKKGSFPTALGEISFDEKGDPKLPGYVMYEWKKGPDGKFTYIQQGSHH 352 (356)
T ss_dssp -------------------CCHHHHHHHHTTCCBCCTTSSBCBCTTSCBCCCCCEEEEEEECTTSSEEEEEC----
T ss_pred -------------------CCHHHHHHHHHhCCCCCcceeeEECCCCCccCCCeEEEEEEECCCCcEEEEeccccc
Confidence 148999999999999999999999999998888999999995 899999999764
No 21
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=100.00 E-value=4e-37 Score=318.03 Aligned_cols=341 Identities=17% Similarity=0.188 Sum_probs=291.0
Q ss_pred CCeeEEEEEEeecCC---ccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhc-CcEEEEcC
Q 006567 28 RPAVVNVGALFTLDS---TIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMET-DIVAIIGP 103 (640)
Q Consensus 28 ~~~~i~IG~l~~~~~---~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~-~v~aiiGp 103 (640)
.+.+++||+++|++. ..|.....|+++|++++|+ + .|++++++++|+++++..+.+.+++++.+ +|.+||||
T Consensus 13 ~~~~~~iG~~~plsG~~a~~g~~~~~g~~~a~~~in~---i-~G~~i~l~~~D~~~~~~~~~~~~~~l~~~~~v~~iiG~ 88 (366)
T 3td9_A 13 MRKVVKIAVILPMTGGISAFGRMVWEGIQIAHEEKPT---V-LGEEVELVLLDTRSEKTEAANAAARAIDKEKVLAIIGE 88 (366)
T ss_dssp ---CEEEEEEECCSSTTHHHHHHHHHHHHHHHHHCCE---E-TTEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEEC
T ss_pred hcceEEEEEEECCcCcchhcCHHHHHHHHHHHHHhhh---c-CCeEEEEEEecCCCCHHHHHHHHHHHhccCCeEEEEcc
Confidence 455899999999984 4477889999999999998 4 58999999999999999999999999988 59999999
Q ss_pred CChHHHHHHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHH-HhcCCcEEEEEEE-cCCCCcccH
Q 006567 104 QCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMV-SYYGWNAVSVIFV-DNEYGRNGV 181 (640)
Q Consensus 104 ~~s~~~~~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll-~~~~w~~v~ii~~-~~~~g~~~~ 181 (640)
.++..+.++.+++...+||+|++.++++.+++ .++++||+.|++..++.++++++ +++||+++++||. +++|+....
T Consensus 89 ~~s~~~~~~~~~~~~~~iP~i~~~~~~~~~~~-~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~~~~~~~ 167 (366)
T 3td9_A 89 VASAHSLAIAPIAEENKVPMVTPASTNPLVTQ-GRKFVSRVCFIDPFQGAAMAVFAYKNLGAKRVVVFTDVEQDYSVGLS 167 (366)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEESSCCCGGGTT-TCSSEEESSCCHHHHHHHHHHHHHHTSCCCEEEEEEETTCHHHHHHH
T ss_pred CCchhHHHHHHHHHhCCCeEEecCCCCccccC-CCCCEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEEEeCCCcHHHHHH
Confidence 99999999999999999999998887777654 46899999999999999999998 5689999999987 677888888
Q ss_pred HHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecChhhHHHHHHHHHHcCCccCCeEEEEeCcc
Q 006567 182 SALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWL 261 (640)
Q Consensus 182 ~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~il~~a~~~gl~~~~~~~i~~~~~ 261 (640)
+.+++.+++.|+++.... ++.+ ..++...++++++.++++|++.+...++..+++++++.|+.. .|++.+.+
T Consensus 168 ~~~~~~~~~~G~~v~~~~-~~~~----~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~~ 239 (366)
T 3td9_A 168 NFFINKFTELGGQVKRVF-FRSG----DQDFSAQLSVAMSFNPDAIYITGYYPEIALISRQARQLGFTG---YILAGDGA 239 (366)
T ss_dssp HHHHHHHHHTTCEEEEEE-ECTT----CCCCHHHHHHHHHTCCSEEEECSCHHHHHHHHHHHHHTTCCS---EEEECGGG
T ss_pred HHHHHHHHHCCCEEEEEE-eCCC----CccHHHHHHHHHhcCCCEEEEccchhHHHHHHHHHHHcCCCc---eEEeeCCc
Confidence 999999999999998777 7655 667888999999999999999999999999999999999853 46666544
Q ss_pred ccccCCCCCChhhhhhccceEEEEEccCC---chhHHHHHHHHhhhcCCCCCCCchhhhhhhHHHHHHHHHHHHhhcCCc
Q 006567 262 AYMLDSASLPSETLESMQGVLVLRQHIPE---SDRKKNFLSRWKNLTGGSLGMNSYGLYAYDSVWLLAHAIESFFNQGGK 338 (640)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~ 338 (640)
.... .........+|++....+.+. .+..++|.++|++++ +..++.+++.+|||++++++|++++..
T Consensus 240 ~~~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~--g~~p~~~~~~~yda~~~~~~al~~ag~---- 309 (366)
T 3td9_A 240 DAPE----LIEIGGEAVEGLLFTTHYHPKAASNPVAKKFVEVYKEKY--GKEPAALNALGYDAYMVLLDAIERAGS---- 309 (366)
T ss_dssp CSTH----HHHHHGGGGTTCEEEESCCGGGCCSHHHHHHHHHHHHHH--SSCCCHHHHHHHHHHHHHHHHHHHHTS----
T ss_pred CCHH----HHHHHhHHhCCeEEEEeeCCCCCCCHHHHHHHHHHHHHH--CCCCchhHHHHHHHHHHHHHHHHHhCC----
Confidence 3210 111233567888888766554 678999999999998 456789999999999999999998622
Q ss_pred ccccCCccccccCCCCcccCcccccCchHHHHHHHHhCc-ccccccceEEccCCCcccccEEEEEEecccEEEEEEEeCC
Q 006567 339 ISFSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSN-LVGLTGPLKFNSDRSLIHAAYDIINVIGTGFRMIGYWSNY 417 (640)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~-f~g~tG~v~Fd~~g~r~~~~~~I~~~~~~~~~~vG~w~~~ 417 (640)
.++..+.++|++++ |+|++|+++|+++|++. ..+.|.++++++++.|+.|++.
T Consensus 310 -------------------------~~~~~~~~~l~~~~~~~g~~G~i~f~~~g~~~-~~~~i~~~~~g~~~~v~~~~~~ 363 (366)
T 3td9_A 310 -------------------------FDREKIAEEIRKTRNFNGASGIINIDENGDAI-KSVVVNIVKNGSVDFEAVINPD 363 (366)
T ss_dssp -------------------------CCHHHHHHHHTTCCSEEETTEEECBCTTSCBC-CCEEEEEEETTEEEEEEEECGG
T ss_pred -------------------------CCHHHHHHHHHhCCCCcccceeeEECCCCCcc-CceEEEEEECCEEEEEEecChh
Confidence 14899999999998 99999999999999976 5599999999999999999874
No 22
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=100.00 E-value=1.8e-36 Score=312.07 Aligned_cols=345 Identities=17% Similarity=0.180 Sum_probs=291.4
Q ss_pred CeeEEEEEEeecCC---ccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhH-hcCcEEEEcCC
Q 006567 29 PAVVNVGALFTLDS---TIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFM-ETDIVAIIGPQ 104 (640)
Q Consensus 29 ~~~i~IG~l~~~~~---~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~-~~~v~aiiGp~ 104 (640)
.++|+||+++|++. ..+.....|+++|++++|++++++ |+++++++.|+++++..+.+.+.+++ +++|.+||||.
T Consensus 2 ~~~i~IG~i~p~sg~~~~~~~~~~~g~~~a~~~~n~~ggi~-G~~~~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~ 80 (358)
T 3hut_A 2 SLALLLGYELPLTGANAAYGRVFQEAARLQLDRFNAAGGVG-GRPVDILYADSRDDADQARTIARAFVDDPRVVGVLGDF 80 (358)
T ss_dssp -CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBT-TBCEEEEEEECTTCHHHHHHHHHHHHHCTTEEEEEECS
T ss_pred CccEEEEEEeccCCchhhcCHHHHHHHHHHHHHHHhhCCCC-CeEEEEEEecCCCCHHHHHHHHHHHhccCCcEEEEcCC
Confidence 36799999999974 346788999999999999999986 99999999999999999999999999 67999999999
Q ss_pred ChHHHHHHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCCCCcccHHHH
Q 006567 105 CSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSAL 184 (640)
Q Consensus 105 ~s~~~~~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~~~~~g~~~~~~~ 184 (640)
++..+.++.+++...+||+|++.++++.+++.. +++||+.|++..++.++++++.+.||++|++|+.++.++....+.+
T Consensus 81 ~s~~~~~~~~~~~~~~iP~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~~ 159 (358)
T 3hut_A 81 SSTVSMAAGSIYGKEGMPQLSPTAAHPDYIKIS-PWQFRAITTPAFEGPNNAAWMIGDGFTSVAVIGVTTDWGLSSAQAF 159 (358)
T ss_dssp SHHHHHHHHHHHHHHTCCEEESSCCCGGGTTSC-TTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHCCCcEEecCCCCcccccCC-CeEEEecCChHHHHHHHHHHHHHcCCCEEEEEecCcHHHHHHHHHH
Confidence 999999999999999999999888777776644 8999999999999999999988889999999999999999999999
Q ss_pred HHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecChhhHHHHHHHHHHcCCccCCeEEEEeCccccc
Q 006567 185 NDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAYM 264 (640)
Q Consensus 185 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~il~~a~~~gl~~~~~~~i~~~~~~~~ 264 (640)
++.+++.|+++.....++.+ ..++...++++++.++++|++.++...+..+++++++.|+.. .|++.+.+...
T Consensus 160 ~~~l~~~g~~v~~~~~~~~~----~~~~~~~~~~l~~~~~d~i~~~~~~~~a~~~~~~~~~~g~~~---p~~~~~~~~~~ 232 (358)
T 3hut_A 160 RKAFELRGGAVVVNEEVPPG----NRRFDDVIDEIEDEAPQAIYLAMAYEDAAPFLRALRARGSAL---PVYGSSALYSP 232 (358)
T ss_dssp HHHHHHTTCEEEEEEEECTT----CCCCHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHHHTTCCC---CEEECGGGCSH
T ss_pred HHHHHHcCCEEEEEEecCCC----CccHHHHHHHHHhcCCCEEEEccCchHHHHHHHHHHHcCCCC---cEEecCcccCH
Confidence 99999999999877666654 567788899999889999999999989999999999999854 36666544221
Q ss_pred cCCCCCChhhhhhccceEEEEEccC--CchhHHHHHHHHhhhcCCCCCCCchhhhhhhHHHHHHHHHHHHhhcCCccccc
Q 006567 265 LDSASLPSETLESMQGVLVLRQHIP--ESDRKKNFLSRWKNLTGGSLGMNSYGLYAYDSVWLLAHAIESFFNQGGKISFS 342 (640)
Q Consensus 265 ~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~ 342 (640)
.. ........+|++...++.+ ..+..++|.++|++++ +..++.+++.+|||++++++|++++...
T Consensus 233 ~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~--~~~p~~~~~~~yda~~~~~~al~~ag~~------- 299 (358)
T 3hut_A 233 KF----IDLGGPAVEGVRLATAFVLGASDPVVVEFVSAYETLY--GAIPTLFAAHGYDAVGIMLAAVGRAGPE------- 299 (358)
T ss_dssp HH----HHHHGGGGTTCEEEESCCTTCCSHHHHHHHHHHHHHH--SSCCCHHHHHHHHHHHHHHHHHHHHCTT-------
T ss_pred HH----HHHhHHhhCCeEEEeccCCCCCCHHHHHHHHHHHHHH--CCCCCHHHHHHHHHHHHHHHHHHHhCCC-------
Confidence 10 0122346788888877655 4678999999999988 4578899999999999999999986211
Q ss_pred CCccccccCCCCcccCcccccCchHH-HHHHHHhC-cccccccceEEccCCCcccccEEEEEEecccEEEEEEEeCC
Q 006567 343 NDSRLKTMEGGNLHLGAMSIFDDGML-LLGNILQS-NLVGLTGPLKFNSDRSLIHAAYDIINVIGTGFRMIGYWSNY 417 (640)
Q Consensus 343 ~~~~~~~~~~~~~~c~~~~~~~~g~~-l~~~l~~~-~f~g~tG~v~Fd~~g~r~~~~~~I~~~~~~~~~~vG~w~~~ 417 (640)
++.. +.++|+++ .|+|++|+++|+++|++....+.|+++++++|+.+.....+
T Consensus 300 ----------------------~~~~~~~~~l~~~~~~~g~~G~~~f~~~g~~~~~~~~i~~~~~G~~~~~~~~~~~ 354 (358)
T 3hut_A 300 ----------------------VTRESLRDALAATDRYAGVTGITRFDPETRETTKILTRLVVREGDFRVIDREGHH 354 (358)
T ss_dssp ----------------------CCHHHHHHHHHTCCSEEETTEEEEECTTTCCEEECCEEEEEETTEEEEC------
T ss_pred ----------------------ChHHHHHHHHHhcCCCcCCceeeEECCCCCcCCCceEEEEEECCEEEEecccccc
Confidence 3667 99999999 89999999999999997678899999999999888776553
No 23
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=100.00 E-value=1.5e-36 Score=311.26 Aligned_cols=339 Identities=17% Similarity=0.236 Sum_probs=284.5
Q ss_pred eeEEEEEEeecCCc---cchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcCcEEEEcCCCh
Q 006567 30 AVVNVGALFTLDST---IGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCS 106 (640)
Q Consensus 30 ~~i~IG~l~~~~~~---~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aiiGp~~s 106 (640)
++|+||+++|.+.. .+.....|+++|++++|+++++ +|++|++++.|+++++..+.+.+.++++++|.+||||.++
T Consensus 1 ~~i~IG~~~p~~g~~~~~~~~~~~g~~~a~~~iN~~ggi-~G~~l~l~~~d~~~~~~~~~~~~~~l~~~~v~~iig~~~s 79 (346)
T 1usg_A 1 DDIKVAVVGAMSGPIAQWGDMEFNGARQAIKDINAKGGI-KGDKLVGVEYDDACDPKQAVAVANKIVNDGIKYVIGHLCS 79 (346)
T ss_dssp CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTB-TTBCEEEEEEECTTCHHHHHHHHHHHHHTTCCEEECCSSH
T ss_pred CcEEEEEEeCCCCcchhcCHHHHHHHHHHHHHHHHhCCC-CCeEEEEEEeCCCCCHHHHHHHHHHHHhCCCCEEEcCCCc
Confidence 36999999999743 4667899999999999999998 6999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHH-HhcCCcEEEEEEEcCCCCcccHHHHH
Q 006567 107 TVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMV-SYYGWNAVSVIFVDNEYGRNGVSALN 185 (640)
Q Consensus 107 ~~~~~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll-~~~~w~~v~ii~~~~~~g~~~~~~~~ 185 (640)
..+.++.+++...++|+|++.++++.+++..++++||+.|++..++.++++++ +++||+++++|+.++.++....+.++
T Consensus 80 ~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~i~~i~~~~~~~~~~~~~~~ 159 (346)
T 1usg_A 80 SSTQPASDIYEDEGILMISPGATNPELTQRGYQHIMRTAGLDSSQGPTAAKYILETVKPQRIAIIHDKQQYGEGLARSVQ 159 (346)
T ss_dssp HHHHHHHHHHHHHTCEEEECCCCCGGGGSSCCSSEEECSCCGGGHHHHHHHHHHHTTCCSSEEEEECSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCeEEeeCCCChHHhcCCCCcEEeccCChHHHHHHHHHHHHHhcCCCeEEEEECCCchHHHHHHHHH
Confidence 88888899999999999998777776765457899999999999999999997 45799999999998888888899999
Q ss_pred HHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecChhhHHHHHHHHHHcCCccCCeEEEEeCcccccc
Q 006567 186 DKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAYML 265 (640)
Q Consensus 186 ~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~il~~a~~~gl~~~~~~~i~~~~~~~~~ 265 (640)
+.+++.|+++.....++.+ ..++...++++++.++++|++.+....+..+++++++.|+..+ |++++.+...
T Consensus 160 ~~l~~~g~~v~~~~~~~~~----~~d~~~~~~~l~~~~~d~i~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~~~~~- 231 (346)
T 1usg_A 160 DGLKAANANVVFFDGITAG----EKDFSALIARLKKENIDFVYYGGYYPEMGQMLRQARSVGLKTQ---FMGPEGVGNA- 231 (346)
T ss_dssp HHHHHTTCCEEEEEECCTT----CCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCE---EEECGGGCCT-
T ss_pred HHHHHcCCEEEEEeccCCC----CcCHHHHHHHHHhcCCCEEEEcCcchHHHHHHHHHHHcCCCCe---EEecCCCCcH-
Confidence 9999999998876666544 4566788899998899999999888889999999999998653 7776654321
Q ss_pred CCCCCChhhhhhccceEEEEEcc-CCchhHHHHHHHHhhhcCCCCCCCchhhhhhhHHHHHHHHHHHHhhcCCcccccCC
Q 006567 266 DSASLPSETLESMQGVLVLRQHI-PESDRKKNFLSRWKNLTGGSLGMNSYGLYAYDSVWLLAHAIESFFNQGGKISFSND 344 (640)
Q Consensus 266 ~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~~ 344 (640)
. .........+|++...++. ..++..++|.++|++++ +..++.++..+|||++++++|++++..
T Consensus 232 ~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~--~~~~~~~~~~~yda~~~~~~al~~~g~---------- 296 (346)
T 1usg_A 232 S---LSNIAGDAAEGMLVTMPKRYDQDPANQGIVDALKADK--KDPSGPYVWITYAAVQSLATALERTGS---------- 296 (346)
T ss_dssp T---HHHHHGGGGTTCEEEECCCGGGSGGGHHHHHHHHHTT--CCCCCHHHHHHHHHHHHHHHHHHHHCC----------
T ss_pred H---HHHHhhHhhCCeEEecCCCCCCCHHHHHHHHHHHHHh--CCCCchhHHHHHHHHHHHHHHHHHhCC----------
Confidence 0 0012234577888776543 34667899999999887 456778999999999999999998621
Q ss_pred ccccccCCCCcccCcccccCchHHHHHHHHhCcccccccceEEccCCCcccccEEEEEEe-cccEEEE
Q 006567 345 SRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLIHAAYDIINVI-GTGFRMI 411 (640)
Q Consensus 345 ~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~g~tG~v~Fd~~g~r~~~~~~I~~~~-~~~~~~v 411 (640)
.++..++++|++.+|+|++|+++|+++|++....|.|++++ ++.++.+
T Consensus 297 -------------------~~~~~l~~~l~~~~~~g~~G~i~f~~~g~~~~~~~~i~~~~~~G~~~~~ 345 (346)
T 1usg_A 297 -------------------DEPLALVKDLKANGANTVIGPLNWDEKGDLKGFDFGVFQWHADGSSTKA 345 (346)
T ss_dssp -------------------CCHHHHHHHHHHHCEEETTEEECBCTTSSBSSCCCEEEEECTTSCEEEC
T ss_pred -------------------CCHHHHHHHHHhCCCccceeeeEECCCCCccCCceEEEEEecCCEEEec
Confidence 13889999999999999999999999999877889999998 7777654
No 24
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=100.00 E-value=5.3e-36 Score=310.62 Aligned_cols=334 Identities=15% Similarity=0.158 Sum_probs=285.2
Q ss_pred CeeEEEEEEeecCCc---c-chHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHh-cCcEEEEcC
Q 006567 29 PAVVNVGALFTLDST---I-GRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFME-TDIVAIIGP 103 (640)
Q Consensus 29 ~~~i~IG~l~~~~~~---~-g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~-~~v~aiiGp 103 (640)
.++|+||+++|++.. . |.....|+++|++++ ++++ .|++++++++|+++++..+.+.+++++. ++|.+||||
T Consensus 2 ~~~i~IG~~~p~sg~~a~~~g~~~~~g~~~A~~~~--~ggi-~G~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~~iiG~ 78 (375)
T 3i09_A 2 ADSVKIGFITDMSGLYADIDGQGGLEAIKMAVADF--GGKV-NGKPIEVVYADHQNKADIAASKAREWMDRGGLDLLVGG 78 (375)
T ss_dssp CSSEEEEEEECSSSTTTTTSHHHHHHHHHHHHHHH--TSEE-TTEEEEEEEEECTTCHHHHHHHHHHHHHHSCEEEEEEC
T ss_pred CCCeEEEEEeCCCcccccccCHHHHHHHHHHHHHh--CCCC-CCeEEEEEEecCCCCHHHHHHHHHHHHhhCCCEEEECC
Confidence 367999999999743 3 677899999999999 4566 5899999999999999999999999998 799999999
Q ss_pred CChHHHHHHHHhhccCCceEEecccCCCCCCC-CCCCcEEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCCCCcccHH
Q 006567 104 QCSTVAHIVSYVSNELQVPLLSFGVTDPTLSS-LQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVS 182 (640)
Q Consensus 104 ~~s~~~~~v~~~~~~~~iP~is~~~~~~~l~~-~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~~~~~g~~~~~ 182 (640)
.++..+.++.+++...++|+|++.++++.+++ ..++++||+.|++..+++++++++.+++|+++++|++++.+|....+
T Consensus 79 ~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~~~~g~~~~~ 158 (375)
T 3i09_A 79 TNSATALSMNQVAAEKKKVYINIGAGADTLTNEQCTPYTVHYAYDTMALAKGTGSAVVKQGGKTWFFLTADYAFGKALEK 158 (375)
T ss_dssp SCHHHHHHHHHHHHHHTCEEEECSCCCGGGGTTTCCTTEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCceEEEeCCCchhhhcccCCCcEEEeeCChHHHHHHHHHHHHHcCCceEEEEecccHHHHHHHH
Confidence 99999999999999999999999888887776 46899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecChhhHHHHHHHHHHcCCccCCeEEEEeCccc
Q 006567 183 ALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLA 262 (640)
Q Consensus 183 ~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~il~~a~~~gl~~~~~~~i~~~~~~ 262 (640)
.+++.+++.|+++.....++.+ ..++...+.++++.++++|++.+...++..+++++++.|+..+. .+++.+.+.
T Consensus 159 ~~~~~~~~~G~~v~~~~~~~~~----~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~~-~i~g~~~~~ 233 (375)
T 3i09_A 159 NTADVVKANGGKVLGEVRHPLS----ASDFSSFLLQAQSSKAQILGLANAGGDTVNAIKAAKEFGITKTM-KLAALLMFI 233 (375)
T ss_dssp HHHHHHHHTTCEEEEEEEECTT----CSCCHHHHHHHHHTCCSEEEEECCHHHHHHHHHHHHHTTGGGTC-EEEESSCCH
T ss_pred HHHHHHHHcCCEEeeeeeCCCC----CccHHHHHHHHHhCCCCEEEEecCchhHHHHHHHHHHcCCCcCc-eEEecccch
Confidence 9999999999999887777765 66788999999999999999999999999999999999998765 444433332
Q ss_pred cccCCCCCChhhhhhccceEEEEEccCC-chhHHHHHHHHhhhcCCCCCCCchhhhhhhHHHHHHHHHHHHhhcCCcccc
Q 006567 263 YMLDSASLPSETLESMQGVLVLRQHIPE-SDRKKNFLSRWKNLTGGSLGMNSYGLYAYDSVWLLAHAIESFFNQGGKISF 341 (640)
Q Consensus 263 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~ 341 (640)
.... .......+|++...++.+. ++..++|.++|+++| +..|+.+++.+|||++++++|++++..
T Consensus 234 ~~~~-----~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~--g~~p~~~a~~~Yda~~~~~~Al~~ag~------- 299 (375)
T 3i09_A 234 NDVH-----ALGLETTQGLVLTDSWYWNRDQASRQWAQRYFAKM--KKMPSSLQAADYSSVTTYLKAVQAAGS------- 299 (375)
T ss_dssp HHHH-----HHCHHHHTTCEEEESCCTTSSHHHHHHHHHHHHHH--SSCCCHHHHHHHHHHHHHHHHHHHHTS-------
T ss_pred hhHh-----hhChhhhCCeeeeeeecCCCCHHHHHHHHHHHHHH--CCCCcHHHHHHHHHHHHHHHHHHHhCC-------
Confidence 1110 1112457788777765543 677999999999998 467888999999999999999998621
Q ss_pred cCCccccccCCCCcccCcccccCchHHHHHHHHhCcccccccceEEccCCCcccccEEEEEEeccc
Q 006567 342 SNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLIHAAYDIINVIGTG 407 (640)
Q Consensus 342 ~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~g~tG~v~Fd~~g~r~~~~~~I~~~~~~~ 407 (640)
.++..|+++|++++|+|++|.++|+++|++. ..+.|.++++++
T Consensus 300 ----------------------~~~~~l~~aL~~~~~~~~~G~~~f~~~g~~~-~~~~i~~v~~~~ 342 (375)
T 3i09_A 300 ----------------------TDSDKVMAQLKKMKIDDFYAKGYIRTDGSMI-HDMYLMEVKKPS 342 (375)
T ss_dssp ----------------------CCHHHHHHHHTTSCEESSSCEEEECTTSBEE-CCEEEEEECCGG
T ss_pred ----------------------CCHHHHHHHHhCCCccCCCCceEECCCCCee-eeeEEEEEeccc
Confidence 1489999999999999999999999999975 577888887543
No 25
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=100.00 E-value=2.1e-36 Score=315.58 Aligned_cols=351 Identities=13% Similarity=0.027 Sum_probs=292.5
Q ss_pred CCeeEEEEEEeecCC---ccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhc-CcEEEEcC
Q 006567 28 RPAVVNVGALFTLDS---TIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMET-DIVAIIGP 103 (640)
Q Consensus 28 ~~~~i~IG~l~~~~~---~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~-~v~aiiGp 103 (640)
..++|+||+++|++. ..|.....|+++|++++|++++++ |++|+++++|+++++..+.+.+++++.+ +|.+|||
T Consensus 4 a~~~i~IG~~~p~sG~~a~~g~~~~~g~~~a~~~iN~~ggi~-G~~i~l~~~D~~~~~~~~~~~~~~li~~~~V~~iig- 81 (392)
T 3lkb_A 4 GQQQVTLFWSGAITGPTSDAGAPYGAAVEDYCKWANERKLVP-GVVFNCVVRDDQYNNANTQRFFEEAVDRFKIPVFLS- 81 (392)
T ss_dssp CCEEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHTSST-TEEEEEEEEECTTCHHHHHHHHHHHHHTTCCSCEEE-
T ss_pred cCCceEEEEEecccCchhhcChhHHHHHHHHHHHHHhcCCcC-CeEeEEEEecCCCCHHHHHHHHHHHHhhcCcEEEEe-
Confidence 357899999999974 346788999999999999999995 8999999999999999999999999997 9999999
Q ss_pred CChHHHHHHHHhhccCCceEEecccCCCCCCC-CCCCcEEEecCCchHHHHHHHHHHHh-cCCcEEEEEEEcCCCCcccH
Q 006567 104 QCSTVAHIVSYVSNELQVPLLSFGVTDPTLSS-LQYPFFVRTTQSDSYQMTAVAEMVSY-YGWNAVSVIFVDNEYGRNGV 181 (640)
Q Consensus 104 ~~s~~~~~v~~~~~~~~iP~is~~~~~~~l~~-~~~~~~~r~~p~~~~~~~al~~ll~~-~~w~~v~ii~~~~~~g~~~~ 181 (640)
.++..+.++.+++...+||+|++.++.+ +.+ ..++++||+.|++..++.++++++.+ ++|++|++|+.++.+|....
T Consensus 82 ~~s~~~~~~~~~~~~~~iP~i~~~~~~~-~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~g~~~~ 160 (392)
T 3lkb_A 82 YATGANLQLKPLIQELRIPTIPASMHIE-LIDPPNNDYIFLPTTSYSEQVVALLEYIAREKKGAKVALVVHPSPFGRAPV 160 (392)
T ss_dssp CCHHHHHHHHHHHHHHTCCEEESCCCGG-GGSSSSCTTBCEEECCHHHHHHHHHHHHHHHCTTCEEEEEECSSHHHHTTH
T ss_pred CCcHHHHHHHHHHHhCCceEEecccChh-hccCCCCCceEecCCChHHHHHHHHHHHHHhCCCCEEEEEEeCCchhhhHH
Confidence 6888888899999999999999765443 444 46789999999999999999998876 69999999999999999999
Q ss_pred HHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecChhhHHHHHHHHHHcCCccCCeEEEEeCcc
Q 006567 182 SALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWL 261 (640)
Q Consensus 182 ~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~il~~a~~~gl~~~~~~~i~~~~~ 261 (640)
+.+++.+++.|+++.....++.+ ..++...+.++++.++++|++.+...++..+++++++.|+.. .|+.++.+
T Consensus 161 ~~~~~~l~~~G~~v~~~~~~~~~----~~d~~~~~~~l~~~~~dav~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~~ 233 (392)
T 3lkb_A 161 EDARKAARELGLQIVDVQEVGSG----NLDNTALLKRFEQAGVEYVVHQNVAGPVANILKDAKRLGLKM---RHLGAHYT 233 (392)
T ss_dssp HHHHHHHHHHTCEEEEEEECCTT----CCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCC---EEEECGGG
T ss_pred HHHHHHHHHcCCeEEEEEeeCCC----CcCHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCc---eEEEecCc
Confidence 99999999999999887777755 667888999999999999999999999999999999999854 46665433
Q ss_pred ccccCCCCCChhhhhhccceEEEEEccC--CchhHHHHHHHHhhhcCCCCCCCch----hhhhhhHHHHHHHHHHHHhhc
Q 006567 262 AYMLDSASLPSETLESMQGVLVLRQHIP--ESDRKKNFLSRWKNLTGGSLGMNSY----GLYAYDSVWLLAHAIESFFNQ 335 (640)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~----~~~~yDav~~~a~Al~~~~~~ 335 (640)
.... . ........+|++...++.+ .++..++|.++|+++| +..++.+ +..+|||++++++|++++...
T Consensus 234 ~~~~-~---~~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~--~~~p~~~~~~~~~~~yda~~~~~~al~~ag~~ 307 (392)
T 3lkb_A 234 GGPD-L---IALAGDAAEGFLWATSFYMAHEDTPGIRLQKEIGRKY--GRPENFIESVNYTNGMLAAAIAVEAIRRAQER 307 (392)
T ss_dssp CSHH-H---HHHHGGGGTTCEEEESBCCTTSCCHHHHHHHHHHHHT--TCCHHHHTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHH-H---HHhhhhhhcCeEEEEeecCCCCCchhHHHHHHHHHHh--CCCcccccchhHHHHHHHHHHHHHHHHHhhcc
Confidence 2110 0 0122346788888776543 2456789999999988 3444433 789999999999999998642
Q ss_pred CCcccccCCccccccCCCCcccCcccccCchHHHHHHHHhCc----cc-------ccccceEEccCCCcccccEEEEEEe
Q 006567 336 GGKISFSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSN----LV-------GLTGPLKFNSDRSLIHAAYDIINVI 404 (640)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~----f~-------g~tG~v~Fd~~g~r~~~~~~I~~~~ 404 (640)
++. .++..++++|++++ |+ |++|+++|+++|++....+.|.+++
T Consensus 308 ~~~-------------------------~~~~~v~~aL~~~~~~~~~~~~~~~~~G~~G~i~f~~~~~~~~~~~~i~~~~ 362 (392)
T 3lkb_A 308 FKR-------------------------ITNETVYQAIVGMNGPNAFKPGFAVSTKQGVEIDFTKSEHTGAEGLRILEAK 362 (392)
T ss_dssp HSS-------------------------CCHHHHHHHHHTCCGGGCBCCSSBCCCSSSCSBCCCSSCCEEECCBEEEEEE
T ss_pred CCC-------------------------CCHHHHHHHHHhcCCCcCcccccccccccceeeEeCCCCcCCcccEEEEEEe
Confidence 211 14899999999997 88 9999999999998777789999999
Q ss_pred cccEEEEEEEeCCCC
Q 006567 405 GTGFRMIGYWSNYSG 419 (640)
Q Consensus 405 ~~~~~~vG~w~~~~~ 419 (640)
+++|+.|+.|....+
T Consensus 363 ~g~~~~v~~w~~~~~ 377 (392)
T 3lkb_A 363 GGRFVPVTEPFTSAL 377 (392)
T ss_dssp TTEEEECSCCBCCHH
T ss_pred CCEEEEeccccchhH
Confidence 999999999987554
No 26
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=100.00 E-value=2.3e-36 Score=310.65 Aligned_cols=339 Identities=16% Similarity=0.185 Sum_probs=274.1
Q ss_pred CCCeeEEEEEEeecCC---ccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhc-CcEEEEc
Q 006567 27 ARPAVVNVGALFTLDS---TIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMET-DIVAIIG 102 (640)
Q Consensus 27 ~~~~~i~IG~l~~~~~---~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~-~v~aiiG 102 (640)
..+++|+||+++|++. ..|.....|+++|+++||+.+|++ |++|+++++|++++|..+.+++.+|+.+ +|.+|+|
T Consensus 3 ~~~~tIkIG~~~plsG~~a~~G~~~~~g~~lAv~~iN~~GGi~-Gr~ielv~~D~~~~p~~a~~~a~~li~~~~v~~i~g 81 (353)
T 4gnr_A 3 VEEKTIKIGFNFEESGSLAAYGTAEQKGAQLAVDEINAAGGID-GKQIEVVDKDNKSETAEAASVTTNLVTQSKVSAVVG 81 (353)
T ss_dssp ---CEEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHHTTCBT-TBEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEC
T ss_pred CCCCeEEEEEEeCCcCchhHhHHHHHHHHHHHHHHHHhcCCCC-CeEEEEEEecCCCCHHHHHHHHHHHHhhCCceEEec
Confidence 3567999999999984 457889999999999999999995 9999999999999999999999999987 7899999
Q ss_pred CCChHHHHHHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHHhcC-CcEEEEEEEc-CCCCccc
Q 006567 103 PQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYG-WNAVSVIFVD-NEYGRNG 180 (640)
Q Consensus 103 p~~s~~~~~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~~~~-w~~v~ii~~~-~~~g~~~ 180 (640)
|.+|..+.++.+++..+++|+|++.++++.+++ .++++||+.|++..++.++++++.+.+ ++++++++.+ ++||...
T Consensus 82 ~~~s~~~~a~~~~~~~~~vp~i~~~~~~~~l~~-~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~ 160 (353)
T 4gnr_A 82 PATSGATAAAVANATKAGVPLISPSATQDGLTK-GQDYLFIGTFQDSFQGKIISNYVSEKLNAKKVVLYTDNASDYAKGI 160 (353)
T ss_dssp CCSHHHHHHHHHHHHHTTCCEEESSCCCTTTTT-TCTTEEECSCCHHHHHHHHHHHHHHTSCCSEEEEEEETTCHHHHHH
T ss_pred cccCcccceehhhhhccCcceEeeccccccccc-CCccccccCCCcHHHHHHHHHHHHHhcCCcEEEEEEcCchHHHHHH
Confidence 999999999999999999999999888888875 457899999999999999999987654 4555555554 3477665
Q ss_pred HHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecChhhHHHHHHHHHHcCCccCCeEEEEeCc
Q 006567 181 VSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDW 260 (640)
Q Consensus 181 ~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~il~~a~~~gl~~~~~~~i~~~~ 260 (640)
.+.+.+ +.|.++.....++++ ..|++.++.++++.++|+|++.+...++..++++++++|+..+ ++..+.
T Consensus 161 ~~~~~~---~~g~~vv~~~~~~~~----~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~ 230 (353)
T 4gnr_A 161 AKSFRE---SYKGEIVADETFVAG----DTDFQAALTKMKGKDFDAIVVPGYYNEAGKIVNQARGMGIDKP---IVGGDG 230 (353)
T ss_dssp HHHHHH---HCCSEEEEEEEECTT----CCCCHHHHHHHHTSCCSEEECCSCHHHHHHHHHHHHHTTCCSC---EEECGG
T ss_pred HHHHHH---HcCCEEEEEEeeCCC----CCCHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHHHHcCCCCc---EEEecc
Confidence 555543 457888888888876 6789999999999999999999999999999999999998653 555443
Q ss_pred cccccCCCCCChhhhhhccceEEEEEccC---CchhHHHHHHHHhhhcCCCCCCCchhhhhhhHHHHHHHHHHHHhhcCC
Q 006567 261 LAYMLDSASLPSETLESMQGVLVLRQHIP---ESDRKKNFLSRWKNLTGGSLGMNSYGLYAYDSVWLLAHAIESFFNQGG 337 (640)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~ 337 (640)
+...... .........|.+....+.+ .++..++|.++|++++ +..|+.++.+.|||++++++|++++.
T Consensus 231 ~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~--g~~p~~~a~~~Yda~~~la~Ai~~a~---- 301 (353)
T 4gnr_A 231 FNGEEFV---QQATAEKASNIYFISGFSTTVEVSAKAKAFLDAYRAKY--NEEPSTFAALAYDSVHLVANAAKGAK---- 301 (353)
T ss_dssp GCSHHHH---HHHCTTTCCSEEEEESCCSSSSCCHHHHHHHHHHHHHH--SSCCCHHHHHHHHHHHHHHHHHTTCS----
T ss_pred cccchhh---hhhhhhhhcCccccccccCCCCCCHHHHHHHHHHHHHh--CCCCChhHHHHHHHHHHHHHHHhcCC----
Confidence 3221100 0011235566666654433 4567899999999998 56788999999999999999997420
Q ss_pred cccccCCccccccCCCCcccCcccccCchHHHHHHHHhC-cccccccceEEccCCCcccccEEEEEEecccEEEEEEE
Q 006567 338 KISFSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQS-NLVGLTGPLKFNSDRSLIHAAYDIINVIGTGFRMIGYW 414 (640)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~-~f~g~tG~v~Fd~~g~r~~~~~~I~~~~~~~~~~vG~w 414 (640)
++..++++|+++ .|+|++|+++||++|++ ...+.|+++++++|+.+...
T Consensus 302 ---------------------------~~~~v~~aL~~~~~~~g~~G~i~f~~~g~~-~~~~~i~~v~~Gk~~~~~~v 351 (353)
T 4gnr_A 302 ---------------------------NSGEIKDNLAXTKDFEGVTGQTSFDADHNT-VKTAYMMTMNNGKVEAAEVV 351 (353)
T ss_dssp ---------------------------SHHHHHHHHHTCCCEEETTEEECCCTTSCC-CCCEEEEEEETTEEEEEEEE
T ss_pred ---------------------------CHHHHHHHHHhcCCCccCceeEEECCCcCC-cCCeEEEEEECCEEEEEEEe
Confidence 377899999987 59999999999999996 46678999999888776543
No 27
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=100.00 E-value=8.2e-36 Score=309.59 Aligned_cols=336 Identities=13% Similarity=0.116 Sum_probs=283.2
Q ss_pred CCeeEEEEEEeecCCc---c-chHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHh-cCcEEEEc
Q 006567 28 RPAVVNVGALFTLDST---I-GRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFME-TDIVAIIG 102 (640)
Q Consensus 28 ~~~~i~IG~l~~~~~~---~-g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~-~~v~aiiG 102 (640)
.+++|+||+++|++.. . |.....|+++|++++ ++++ .|++|+++++|+++++..+...+++++. ++|.+|||
T Consensus 3 ~~~~i~IG~~~p~sg~~a~~~g~~~~~g~~~a~~~i--~ggi-~G~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~~iiG 79 (379)
T 3n0w_A 3 STGQVTLGVLTDMSSVYADSAGKGSVAAVQLAIEDV--GGKA-LGQPVKLVSADYQMKTDVALSIAREWFDRDGVDAIFD 79 (379)
T ss_dssp ---CCEEEEEECSSSTTTTTSHHHHHHHHHHHHHHT--TTEE-TTEECEEEEEECTTCHHHHHHHHHHHHHHSCCCEEEE
T ss_pred CCCcEEEEEEeCCccccccccCHHHHHHHHHHHHHh--cCCC-CCeEEEEEEeCCCCCHHHHHHHHHHHHHhCCceEEEc
Confidence 3568999999999743 4 778899999999999 4566 5899999999999999999999999998 79999999
Q ss_pred CCChHHHHHHHHhhccCCceEEecccCCCCCCC-CCCCcEEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCCCCcccH
Q 006567 103 PQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSS-LQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGV 181 (640)
Q Consensus 103 p~~s~~~~~v~~~~~~~~iP~is~~~~~~~l~~-~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~~~~~g~~~~ 181 (640)
|.++..+.++++++...++|+|++.++++.+++ ..++++||+.|++..+++++++++.+++|+++++|++++.+|....
T Consensus 80 ~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~~~~g~~~~ 159 (379)
T 3n0w_A 80 VVNSGTALAINNLVKDKKKLAFITAAAADQIGGTECNGYGIGFLYNFTSIVKTVVQAQLAKGYKTWFLMLPDAAYGDLMN 159 (379)
T ss_dssp CCCHHHHHHHHHHHHHHTCEEEECSCCCTTTTTTTCCSSEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHcCceEEEcCCCchhhhcccCCCcEEEEeCChHHHHHHHHHHHHHcCCcEEEEEecccchhHHHH
Confidence 999999999999999999999999888888876 4589999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecChhhHHHHHHHHHHcCCccCCeEEEEeCcc
Q 006567 182 SALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWL 261 (640)
Q Consensus 182 ~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~il~~a~~~gl~~~~~~~i~~~~~ 261 (640)
+.+++.+++.|+++.....++.+ ..++...+.++++.++++|++.+...++..+++++++.|+..+.+ ++.+..+
T Consensus 160 ~~~~~~~~~~G~~v~~~~~~~~~----~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~ 234 (379)
T 3n0w_A 160 AAIRRELTAGGGQIVGSVRFPFE----TQDFSSYLLQAKASGAQLIVSTSGGAANINIMKQAREFGLPSKTQ-KVGGMID 234 (379)
T ss_dssp HHHHHHHHHHTCEEEEEEEECTT----CCCCHHHHHHHHHHTCSEEEECCCHHHHHHHHHHHHHTTCSCSSC-EEECCBC
T ss_pred HHHHHHHHHcCCEEEEEEeCCCC----CCCHHHHHHHHHHCCCCEEEEecccchHHHHHHHHHHcCCCCCCc-EEEeccc
Confidence 99999999999999888777765 567888999999999999999999899999999999999976543 4443332
Q ss_pred ccccCCCCCChhhhhhccceEEEEEccCC-chhHHHHHHHHhhhcCCCCCCCchhhhhhhHHHHHHHHHHHHhhcCCccc
Q 006567 262 AYMLDSASLPSETLESMQGVLVLRQHIPE-SDRKKNFLSRWKNLTGGSLGMNSYGLYAYDSVWLLAHAIESFFNQGGKIS 340 (640)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~ 340 (640)
... +. ........+|++...++.++ ++..++|.++|+++| +..|+.+++..|||++++++|++++..
T Consensus 235 ~~~-~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~--g~~p~~~~~~~Yda~~~~~~Al~~ag~------ 302 (379)
T 3n0w_A 235 ILT-DV---KSAGLRVMQGQEYATSFYWNMDDRTRAFAKRFYAKM--GKMPTNNQAGGYSAALQYLKAVNAIGS------ 302 (379)
T ss_dssp CHH-HH---HHHCHHHHTTCEEEESCCTTSSHHHHHHHHHHHHHH--SSCCCHHHHHHHHHHHHHHHHHHHHTC------
T ss_pred chH-HH---HhhCHHhhCCeEEEeeecCCCCHHHHHHHHHHHHHH--CCCCChHHHHHHHHHHHHHHHHHHhCC------
Confidence 211 01 01112457788777765543 677999999999998 467789999999999999999998621
Q ss_pred ccCCccccccCCCCcccCcccccCchHHHHHHHHhCcccccccc-eEEccCCCcccccEEEEEEeccc
Q 006567 341 FSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLTGP-LKFNSDRSLIHAAYDIINVIGTG 407 (640)
Q Consensus 341 ~~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~g~tG~-v~Fd~~g~r~~~~~~I~~~~~~~ 407 (640)
.++..|+++|++++|.|+.|. +.|+++|++ ...+.|+++++++
T Consensus 303 -----------------------~~~~~v~~aL~~~~~~~~~G~~~~f~~~g~~-~~~~~i~~~~~~~ 346 (379)
T 3n0w_A 303 -----------------------KDPQKVFAYLKTIKFDDAVTRHGTLRPGGRL-VRDMYLVRAKKPE 346 (379)
T ss_dssp -----------------------CCHHHHHHHHTTCCBCSSSCCSBEECTTSBE-ECCEEEEEECCGG
T ss_pred -----------------------CCHHHHHHHHhcCCccccCCCceeECCCCCc-ccceEEEEEEchh
Confidence 148999999999999999986 999999986 4778898988643
No 28
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=100.00 E-value=1.2e-35 Score=309.69 Aligned_cols=349 Identities=16% Similarity=0.159 Sum_probs=287.7
Q ss_pred CeeEEEEEEeecCC---ccchHHHHHHHHHHHHHhccCCCC-CCc--EEEEEEccCCCChHHHHHHHHHhH-hcCcEEEE
Q 006567 29 PAVVNVGALFTLDS---TIGRVAKIAIEEAVKDVNSNSSIL-HGT--KLNITMQSSNCSGFIGMVEALRFM-ETDIVAII 101 (640)
Q Consensus 29 ~~~i~IG~l~~~~~---~~g~~~~~a~~~Av~~iN~~~~~l-~g~--~i~~~~~D~~~~~~~a~~~a~~l~-~~~v~aii 101 (640)
.++|+||+++|++. ..|.....|+++|+++||+++|++ +|+ +|+++++|+++++..+.+.+.+++ +++|.+||
T Consensus 2 ~~~i~IG~~~p~sG~~a~~g~~~~~g~~~a~~~iN~~ggi~~~G~~~~l~l~~~D~~~~~~~a~~~~~~li~~~~V~~ii 81 (391)
T 3eaf_A 2 SLTINVGLLVDETGPTSDVGKGYSLGAELAFKYFNEKGIYTKDGVRVNINYIKRDYAYNPTTAEEYYREFRDRYGVIAII 81 (391)
T ss_dssp CEEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHCEECTTCCEEEEEEEEEECTTCHHHHHHHHHHHHHTTCCSEEE
T ss_pred CccEEEEEEEcCCCchhhhhHHHHHHHHHHHHHHHHcCCCccCCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhcCcEEEE
Confidence 36899999999984 346788999999999999999985 689 999999999999999999999999 67999999
Q ss_pred cCCChHHHHHHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHHh-cCCcEEEEEEE-cCCCCcc
Q 006567 102 GPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSY-YGWNAVSVIFV-DNEYGRN 179 (640)
Q Consensus 102 Gp~~s~~~~~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~~-~~w~~v~ii~~-~~~~g~~ 179 (640)
| .++..+.++.+++...+||+|++.+..+ +. .++++||+.|++..++.++++++.+ ++|++|++|+. ++.+|..
T Consensus 82 G-~~s~~~~a~~~~~~~~~iP~i~~~~~~~-~~--~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~~g~~ 157 (391)
T 3eaf_A 82 G-WGTADTEKLSDQVDTDKITYISASYSAK-LL--VKPFNFYPAPDYSTQACSGLAFLASEFGQGKLALAYDSKVAYSRS 157 (391)
T ss_dssp E-CCHHHHHHHHHHHHHHTCEEEESCCCGG-GT--TSTTEECSSCCHHHHHHHHHHHHHHHHCSEEEEEEECTTCHHHHT
T ss_pred E-cCcHHHHHHHHHHhhcCCeEEecccchh-hc--CCCcEEEeCCCHHHHHHHHHHHHHHhcCCCEEEEEEecCChhHHH
Confidence 9 6888889999999999999999765543 33 5689999999999999999999877 69999999999 8999999
Q ss_pred cHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHH--HhcCCceEEEEecChhhHHHHHHHHHHcCCccCCeEEEE
Q 006567 180 GVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVK--VALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIA 257 (640)
Q Consensus 180 ~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~--l~~~~~~vivl~~~~~~~~~il~~a~~~gl~~~~~~~i~ 257 (640)
..+.+++.+++.|+++.....++.+ ..++...+.+ +++.++++|++.++..++..+++++++.|+.. .++.
T Consensus 158 ~~~~~~~~l~~~G~~v~~~~~~~~~----~~d~~~~~~~~~l~~~~~dav~~~~~~~~~~~~~~~~~~~g~~~---~~~~ 230 (391)
T 3eaf_A 158 PIGAIKKAAPSLGLQVVGDYDLPLR----ATEADAERIAREMLAADPDYVWCGNTISSCSLLGRAMAKVGLDA---FLLT 230 (391)
T ss_dssp THHHHHHHTGGGTEEEEEEEECCTT----CCHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHHHHHTCCC---EEEE
T ss_pred HHHHHHHHHHHcCCceeeeeccCCC----CcCHHHHHHHHHHHHcCCCEEEEecCcHHHHHHHHHHHHCCCCc---eEEE
Confidence 9999999999999999887777765 6789999999 99999999999999999999999999999854 3454
Q ss_pred eCccccccCCCCCChhhhhhccc-eEEEEEcc-----CCchhHHHHHHHHhhhcCCCCCC--CchhhhhhhHHHHHHHHH
Q 006567 258 TDWLAYMLDSASLPSETLESMQG-VLVLRQHI-----PESDRKKNFLSRWKNLTGGSLGM--NSYGLYAYDSVWLLAHAI 329 (640)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~-----~~~~~~~~f~~~~~~~~~~~~~~--~~~~~~~yDav~~~a~Al 329 (640)
+++... .. .........+| ++...++. ...+. ++|.++|+++|+ ...| +.+++.+|||++++++|+
T Consensus 231 ~~~~~~-~~---~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~-~~f~~~~~~~~~-~~~p~~~~~~~~~yda~~~l~~Al 304 (391)
T 3eaf_A 231 NVWGFD-ER---SPQLIGEGGYGKVFGISPFIYPMFGQDVEG-IQTIFEAARMNG-VSEDQINLRVVQGFVNVWLLIKAI 304 (391)
T ss_dssp CGGGCS-TT---HHHHHCGGGTTSEEEEESBCCGGGCTTCHH-HHHHHHHHHHTT-CCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred eccCCC-HH---HHHhhhhhccCcEEEEEEecCcccCCCCch-hHHHHHHHHHhC-CCCcccccHHHHHHHHHHHHHHHH
Confidence 432211 11 11122346788 77766654 23444 689999999983 1333 478999999999999999
Q ss_pred HHHhhcCCcccccCCccccccCCCCcccCcccccCchHHHHHHHHhCccc--cccc-ceEEccCCCcccccEEEEEE-ec
Q 006567 330 ESFFNQGGKISFSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLV--GLTG-PLKFNSDRSLIHAAYDIINV-IG 405 (640)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~--g~tG-~v~Fd~~g~r~~~~~~I~~~-~~ 405 (640)
+++.+.+.. ..++..+.++|++..|+ |++| +++|+++|++....+.|.++ ++
T Consensus 305 ~~a~~~g~~------------------------~~~~~~v~~aL~~~~~~~~G~~G~~i~f~~~~~~~~~~~~i~~~~~~ 360 (391)
T 3eaf_A 305 ESVTSQDLQ------------------------ERGGEALKEALEANTFDLGGITADTIDYEPGFHLAYRKVFIIKLGEN 360 (391)
T ss_dssp TTSCHHHHH------------------------HHTHHHHHHHHHHCCBCSTTCBSSCBCCBTTBCCCCCCEEEEEECTT
T ss_pred HHHHhcCCC------------------------CCCHHHHHHHHHhCCCCCCCccccceeeCCCCCCcceEEEEEEEecC
Confidence 876221100 01488999999998898 9999 99999877667788999999 88
Q ss_pred ccEEEEEEEeCCC
Q 006567 406 TGFRMIGYWSNYS 418 (640)
Q Consensus 406 ~~~~~vG~w~~~~ 418 (640)
++|+.++.|...+
T Consensus 361 G~~~~v~~~~~~~ 373 (391)
T 3eaf_A 361 GELQLMGKFEAPS 373 (391)
T ss_dssp SSEEEEEEECCCT
T ss_pred CEEEEeeeecCcc
Confidence 9999999997643
No 29
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=100.00 E-value=1.2e-35 Score=308.16 Aligned_cols=344 Identities=11% Similarity=0.140 Sum_probs=292.2
Q ss_pred CCeeEEEEEEeecCC---ccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhc-CcEEEEcC
Q 006567 28 RPAVVNVGALFTLDS---TIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMET-DIVAIIGP 103 (640)
Q Consensus 28 ~~~~i~IG~l~~~~~---~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~-~v~aiiGp 103 (640)
..++|+||+++|++. ..|.....|+++|++++| +++ +|++++++++|+++++..+.+.+.+++++ +|.+||||
T Consensus 13 ~~~~i~IG~~~p~sg~~~~~~~~~~~g~~~a~~~~n--g~~-~g~~~~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~ 89 (375)
T 4evq_A 13 QAGALKVGLLLPYSGTYAPLGEAITRGLELYVQSQG--GKL-GGRSISFVKVDDESAPPKATELTTKLIQSEKADVLIGT 89 (375)
T ss_dssp --CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHTT--TEE-TTEEEEEEEEECTTCHHHHHHHHHCCCCCSCCSEEEEC
T ss_pred hCCCeEEEEEeCCCCcchhcCHHHHHHHHHHHHHhC--CCc-CCEEEEEEEecCCCCHHHHHHHHHHHHhcCCceEEEcC
Confidence 447899999999974 356788999999999998 444 79999999999999999999999999986 99999999
Q ss_pred CChHHHHHHHHhhccCCceEEecccCCCCCCC-CCCCcEEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCCCCcccHH
Q 006567 104 QCSTVAHIVSYVSNELQVPLLSFGVTDPTLSS-LQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVS 182 (640)
Q Consensus 104 ~~s~~~~~v~~~~~~~~iP~is~~~~~~~l~~-~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~~~~~g~~~~~ 182 (640)
.++..+.++.+++...+||+|++.++++.+++ ..++++||+.|++..++.++++++.++||++|++|+.++.+|....+
T Consensus 90 ~~s~~~~~~~~~~~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~ 169 (375)
T 4evq_A 90 VHSGVAMAMVKIAREDGIPTIVPNAGADIITRAMCAPNVFRTSFANGQIGRATGDAMIKAGLKKAVTVTWKYAAGEEMVS 169 (375)
T ss_dssp SSHHHHHHHHHHHHHHCCCEEESSCCCGGGGTTTCCTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHH
T ss_pred CccHHHHHHHHHHHHcCceEEecCCCChhhcccCCCCCEEEeeCChHhHHHHHHHHHHHcCCcEEEEEecCchHHHHHHH
Confidence 99999999999999999999999888877776 34899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecChhhHHHHHHHHHHcCCccCCeEEEEeCccc
Q 006567 183 ALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLA 262 (640)
Q Consensus 183 ~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~il~~a~~~gl~~~~~~~i~~~~~~ 262 (640)
.+++.+++.|+++.....++.+ ..++...++++++.++++|++.++...+..+++++++.|+.. .|+.++ +.
T Consensus 170 ~~~~~l~~~G~~v~~~~~~~~~----~~d~~~~~~~l~~~~~dai~~~~~~~~a~~~~~~~~~~g~~v---p~~~~~-~~ 241 (375)
T 4evq_A 170 GFKKSFTAGKGEVVKDITIAFP----DVEFQSALAEIASLKPDCVYAFFSGGGALKFIKDYAAANLGI---PLWGPG-FL 241 (375)
T ss_dssp HHHHHHHHTTCEEEEEEEECTT----CCCCHHHHHHHHHHCCSEEEEECCTHHHHHHHHHHHHTTCCC---CEEEEG-GG
T ss_pred HHHHHHHHcCCeEEEEEecCCC----CccHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCc---eEEecC-cC
Confidence 9999999999998877767655 567788899999889999999888899999999999999863 245443 32
Q ss_pred cccCCCCCChhhhhhccceEEEEEccC--CchhHHHHHHHHhhhcCCCCCCCchhhhhhhHHHHHHHHHHHHhhcCCccc
Q 006567 263 YMLDSASLPSETLESMQGVLVLRQHIP--ESDRKKNFLSRWKNLTGGSLGMNSYGLYAYDSVWLLAHAIESFFNQGGKIS 340 (640)
Q Consensus 263 ~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~ 340 (640)
.. . .........+|++...++.+ ..+..++|.++|++++ +..++.++..+|||++++++|++++...
T Consensus 242 ~~-~---~~~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~--~~~p~~~~~~~yda~~~~~~al~~~g~~----- 310 (375)
T 4evq_A 242 TD-G---VEAAAGPAGDGIKTVLHYVSDLDNAENQAFVKSFEAAY--KIPPDVFAVQGWDAGQLLDAGVKAVGGD----- 310 (375)
T ss_dssp TT-T---THHHHGGGGTTCEEEESCCTTCCSHHHHHHHHHHHHHH--SSCCCHHHHHHHHHHHHHHHHHHHTTTC-----
T ss_pred CH-H---HHHhhhhhcCCeEEeeccCCCCCCHHHHHHHHHHHHHH--CCCCcHHHHHHHHHHHHHHHHHHHhCCC-----
Confidence 11 1 11223356788888776654 3678999999999988 4678889999999999999999985211
Q ss_pred ccCCccccccCCCCcccCcccccCchHHHHHHHHhCcccccccceEEccCCCcccccEEEEEEecccEEEEEEEeC
Q 006567 341 FSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLIHAAYDIINVIGTGFRMIGYWSN 416 (640)
Q Consensus 341 ~~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~g~tG~v~Fd~~g~r~~~~~~I~~~~~~~~~~vG~w~~ 416 (640)
+.++..|.++|++++|+|++|+++|+++|++ ...+.|.++++++|+.|+.+-.
T Consensus 311 ----------------------~~~~~~l~~~l~~~~~~g~~G~i~f~~~g~~-~~~~~i~~~~~g~~~~v~~~~~ 363 (375)
T 4evq_A 311 ----------------------VAKRKELNAAMAAASFASPRGPFKLSAAHNP-VQNFYLRELKGGKSVNLGLAAP 363 (375)
T ss_dssp ----------------------TTCHHHHHHHHHTCEEEETTEEEEBCTTSCB-CCCEEEEEEETTEEEEEEEEEC
T ss_pred ----------------------CCCHHHHHHHHhcCCcccCCcceeECCCCCc-cccEEEEEEECCCcEEeeehhh
Confidence 1248999999999999999999999999997 4689999999999999999865
No 30
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=100.00 E-value=2.6e-35 Score=304.74 Aligned_cols=346 Identities=14% Similarity=0.163 Sum_probs=289.3
Q ss_pred CCeeEEEEEEeecCCc---cchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHh-cCcEEEEcC
Q 006567 28 RPAVVNVGALFTLDST---IGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFME-TDIVAIIGP 103 (640)
Q Consensus 28 ~~~~i~IG~l~~~~~~---~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~-~~v~aiiGp 103 (640)
..++|+||+++|++.. .|.....|+++|++++|. ++ +|++|+++++|+++++..+.+.+.+++. ++|.+||||
T Consensus 3 a~~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~~~~--~i-~G~~i~l~~~D~~~~~~~~~~~~~~li~~~~v~~iiG~ 79 (368)
T 4eyg_A 3 AEDTFKVGLIVPMTGGQASTGKQIDNAIKLYIKKHGD--TV-AGKKIEVILKDDAAIPDNTKRLAQELIVNDKVNVIAGF 79 (368)
T ss_dssp -CCEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHCS--EE-TTEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEEC
T ss_pred CCCcEEEEEEeCCcCcchhccHHHHHHHHHHHHHcCC--CC-CCeEEEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEECC
Confidence 3578999999999743 467889999999999974 24 6999999999999999999999999998 699999999
Q ss_pred CChHHHHHHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCCCCcccHHH
Q 006567 104 QCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSA 183 (640)
Q Consensus 104 ~~s~~~~~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~~~~~g~~~~~~ 183 (640)
.++..+.++.+++...+||+|++.+.++.+++. ++++||+.|++..++.++++++.+++|+++++|+.++.+|....+.
T Consensus 80 ~~s~~~~~~~~~~~~~~ip~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~g~~~~~~ 158 (368)
T 4eyg_A 80 GITPAALAAAPLATQAKVPEIVMAAGTSIITER-SPYIVRTSFTLAQSSIIIGDWAAKNGIKKVATLTSDYAPGNDALAF 158 (368)
T ss_dssp SSHHHHHHHHHHHHHHTCCEEESSCCCGGGGGG-CTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHH
T ss_pred CccHHHHHHHHHHHhCCceEEeccCCChhhccC-CCCEEEecCChHHHHHHHHHHHHHcCCCEEEEEecCchHhHHHHHH
Confidence 999999999999999999999988777766654 7999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecChhhHHHHHHHHHHcCCccCCeEEEEeCcccc
Q 006567 184 LNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAY 263 (640)
Q Consensus 184 ~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~il~~a~~~gl~~~~~~~i~~~~~~~ 263 (640)
+++.+++.|+++.....++.+ ..++...++++++.++++|++.+....+..+++++++.|+..+++.|++++++..
T Consensus 159 ~~~~l~~~g~~v~~~~~~~~~----~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~~~v~~~~~~~~~~ 234 (368)
T 4eyg_A 159 FKERFTAGGGEIVEEIKVPLA----NPDFAPFLQRMKDAKPDAMFVFVPAGQGGNFMKQFAERGLDKSGIKVIGPGDVMD 234 (368)
T ss_dssp HHHHHHHTTCEEEEEEEECSS----SCCCHHHHHHHHHHCCSEEEEECCTTCHHHHHHHHHHTTGGGTTCEEEEETTTTC
T ss_pred HHHHHHHcCCEEEEEEeCCCC----CCcHHHHHHHHHhcCCCEEEEeccchHHHHHHHHHHHcCCCcCCceEEecCcccC
Confidence 999999999999887777755 5678889999999999999998888899999999999999866577888764322
Q ss_pred ccCCCCCChhhhhhccceEEEEEccC--CchhHHHHHHHHhhhcCCCCCCCchhhhhhhHHHHHHHHHHHHhhcCCcccc
Q 006567 264 MLDSASLPSETLESMQGVLVLRQHIP--ESDRKKNFLSRWKNLTGGSLGMNSYGLYAYDSVWLLAHAIESFFNQGGKISF 341 (640)
Q Consensus 264 ~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~ 341 (640)
.... ........|++...++.+ ..+..++|.++| ++| ++..++.+++.+|||++++++|++++...
T Consensus 235 ~~~~----~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~-~~~-~~~~p~~~~~~~yda~~~~~~al~~~g~~------ 302 (368)
T 4eyg_A 235 DDLL----NSMGDAALGVVTAHMYSAAHPSAMNKEFVAAY-KKE-FGQRPGFMAVGGYDGIHLVFEALKKTGGK------ 302 (368)
T ss_dssp HHHH----TTCCGGGTTCEEEESCCTTCCSHHHHHHHHHH-HHH-HSSCCCHHHHHHHHHHHHHHHHHHHTTTC------
T ss_pred HHHH----HhhhhhhCCeEEeeecCCCCCCHHHHHHHHHH-HHh-CCCCCChHHHHHHHHHHHHHHHHHHhCCC------
Confidence 1111 011245678887766554 467899999999 777 24577889999999999999999985211
Q ss_pred cCCccccccCCCCcccCcccccCchHHHHHHHHhCcccccccceEEc-cCCCcccccEEEEEEe--cccEE--EEEEEeC
Q 006567 342 SNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLTGPLKFN-SDRSLIHAAYDIINVI--GTGFR--MIGYWSN 416 (640)
Q Consensus 342 ~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~g~tG~v~Fd-~~g~r~~~~~~I~~~~--~~~~~--~vG~w~~ 416 (640)
.++..|.++|++++|+|++|+++|| ++|++ ...+.|.+++ +++|+ .++.|.+
T Consensus 303 ----------------------~~~~~l~~al~~~~~~g~~G~i~f~~~~~~~-~~~~~i~~~~~~~G~~~~v~~~~~~~ 359 (368)
T 4eyg_A 303 ----------------------ADGDSLIAAMKGMKWESPRGPISIDPETRDI-VQNIYIRKVEKVDGELYNIEFAKFDA 359 (368)
T ss_dssp ----------------------CSHHHHHHHHTTCEEEETTEEEEECTTTCCE-EEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred ----------------------CCHHHHHHHHHcCCcccCCCCeEECcccCCc-ccceEEEEEEecCCeEEEEEeecccc
Confidence 1489999999999999999999999 67764 5778898888 77774 4556554
No 31
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B
Probab=100.00 E-value=7.4e-36 Score=309.21 Aligned_cols=330 Identities=11% Similarity=0.105 Sum_probs=270.0
Q ss_pred eeEEEEEEeecCC---ccchHHHHHHHHHHHHHhc-cCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhc-CcEEEEcCC
Q 006567 30 AVVNVGALFTLDS---TIGRVAKIAIEEAVKDVNS-NSSILHGTKLNITMQSSNCSGFIGMVEALRFMET-DIVAIIGPQ 104 (640)
Q Consensus 30 ~~i~IG~l~~~~~---~~g~~~~~a~~~Av~~iN~-~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~-~v~aiiGp~ 104 (640)
++|+||+++|++. ..|.....|+++|++++|+ .+++ .|++|+++++|++++|..+...+++|+.+ +|.+||||.
T Consensus 3 ~~i~IG~~~plsG~~a~~g~~~~~g~~lA~~~iN~~~ggi-~G~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~ 81 (374)
T 3n0x_A 3 DDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTL-DGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTS 81 (374)
T ss_dssp -CEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHTTTCCEE-TTEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEECS
T ss_pred CCEEEEEecCCCCchhhhCHHHHHHHHHHHHHHhccCCCc-CCEEEEEEEecCCCCHHHHHHHHHHHHHhCCceEEEcCC
Confidence 5799999999984 3477889999999999998 5666 59999999999999999999999999985 999999999
Q ss_pred ChHHHHHHHHhhccCCceEEecccCCCCCCC-CCCCcEEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCCCCcccHHH
Q 006567 105 CSTVAHIVSYVSNELQVPLLSFGVTDPTLSS-LQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSA 183 (640)
Q Consensus 105 ~s~~~~~v~~~~~~~~iP~is~~~~~~~l~~-~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~~~~~g~~~~~~ 183 (640)
+|..+.++++++..+++|+|++.++++.+++ ..++|+||+.|++..++.+++.++++++| ++++|+++++||....+.
T Consensus 82 ~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~~~-~v~ii~~~~~~g~~~~~~ 160 (374)
T 3n0x_A 82 SSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIGKQGV-TIATLAQDYAFGRDGVAA 160 (374)
T ss_dssp SHHHHHHHHHHHHHHTCCEEECSCCCGGGGTTTCCTTEEECSCCHHHHHHHHHHHHCCTTE-EEEEEEESSHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCccEEEcCCCchhhhcCCCCCeEEEccCCchhHHHHHHHHHhccCC-EEEEEeCCchHHHHHHHH
Confidence 9999999999999999999987777777776 35799999999999999999988888898 899999999999999999
Q ss_pred HHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCC-----ceEEEEecChhhHHHHHHHHHHcCCccCCeEEEEe
Q 006567 184 LNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALME-----SRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIAT 258 (640)
Q Consensus 184 ~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~-----~~vivl~~~~~~~~~il~~a~~~gl~~~~~~~i~~ 258 (640)
+++.+++.|++|.....++.+ ..|++.+++++++.+ +|+|++....... .+.++.+.++...++.+++.
T Consensus 161 ~~~~~~~~G~~vv~~~~~~~~----~~d~~~~l~~i~~~~~~~~~~d~v~~~~~g~~~--~~~~~~~~~~~~~g~~~~~~ 234 (374)
T 3n0x_A 161 FKEALAKTGATLATEEYVPTT----TTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGD--PLTKLQDMDPKRYGIELSTG 234 (374)
T ss_dssp HHHHHTTTTCEEEEEEEECTT----CCCCHHHHHHHHHHHTTCSSEEEEEECCCSSSC--HHHHHHHTCGGGGTEEEEEC
T ss_pred HHHHHHHcCCEEeeeecCCCC----CccHHHHHHHHHhcCCCCCCCCEEEEEecCCcH--HHHHHHHcchhhcCCeeeec
Confidence 999999999999988888765 678999999999988 9999887433221 23455666665555555543
Q ss_pred CccccccCCCCCChhhhhhccceEEEEEc---cCCchhHHHHHHHHhhhcCCCCCCCchhhhhhhHHHHHHHHHHHHhhc
Q 006567 259 DWLAYMLDSASLPSETLESMQGVLVLRQH---IPESDRKKNFLSRWKNLTGGSLGMNSYGLYAYDSVWLLAHAIESFFNQ 335 (640)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~ 335 (640)
+..... ........|+.+...+ .+.++..++|.++|+++| +..|+.+++..|||++++++|++++..
T Consensus 235 ~~~~~~-------~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~y~~~~--g~~p~~~a~~~Yda~~~l~~Al~~ag~- 304 (374)
T 3n0x_A 235 GNILPA-------LAAYKRLPGMEGATYYYYDIPKNPINEWLVTEHQKRF--NAPPDFFTAGGFSAAMAVVTAVQKAKS- 304 (374)
T ss_dssp CCCTTG-------GGGGGGSTTCEEEESCCTTSCCSHHHHHHHHHHHHHH--SSCCCHHHHHHHHHHHHHHHHHHHHTS-
T ss_pred cccchh-------hhhhhhhcCccccceeccCCCCCHHHHHHHHHHHHHH--CCCCChhHHHHHHHHHHHHHHHHHhCC-
Confidence 322111 0111345566665443 345678899999999998 467888999999999999999998622
Q ss_pred CCcccccCCccccccCCCCcccCcccccCchHHHHHHHHhCcccccccceEEccCCCcccccEEEEEEec
Q 006567 336 GGKISFSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLIHAAYDIINVIG 405 (640)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~g~tG~v~Fd~~g~r~~~~~~I~~~~~ 405 (640)
.++..|+++|++++|+|++|+++|++++++....+.|++++.
T Consensus 305 ----------------------------~~~~~v~~aL~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~ 346 (374)
T 3n0x_A 305 ----------------------------TDTEKLIAAMEGMEFDTPKGKMVFRKEDHQALQSMYHFKVKV 346 (374)
T ss_dssp ----------------------------CCHHHHHHHHTTCEEEETTEEEEECTTTCBEECCEEEEEEEC
T ss_pred ----------------------------CCHHHHHHHHhcCCccCCCCCEEECcccCccccceEEEEEEe
Confidence 148999999999999999999999965444567889988875
No 32
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=100.00 E-value=1.7e-35 Score=305.43 Aligned_cols=339 Identities=12% Similarity=0.095 Sum_probs=284.4
Q ss_pred CeeEEEEEEeecCC---ccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhc-CcEEEEcCC
Q 006567 29 PAVVNVGALFTLDS---TIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMET-DIVAIIGPQ 104 (640)
Q Consensus 29 ~~~i~IG~l~~~~~---~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~-~v~aiiGp~ 104 (640)
+++|+||+++|++. ..|.....|+++|++++|+++++ .|++++++++|+++++..+.+.+.+++.+ +|.+||||.
T Consensus 3 ~~~i~IG~~~p~sG~~~~~g~~~~~g~~~a~~~~N~~ggi-~G~~i~l~~~D~~~~~~~~~~~~~~l~~~~~v~~iig~~ 81 (364)
T 3lop_A 3 LADISVIQSLPLSGSQAVTGRALNAGARLYFDWLNLNGGI-NGETIRLVARDDEQKIEQTVRNVRDMARVDNPVALLTVV 81 (364)
T ss_dssp --CEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTB-TTBCEEEEEEECTTCHHHHHHHHHHHHHHSCEEEEECCC
T ss_pred CCeEEEEEEecCCCcchhccHHHHHHHHHHHHHHHhcCCc-CCeEEEEEEeCCCCCHHHHHHHHHHHHhhcCcEEEEecC
Confidence 46899999999973 45677899999999999999998 48999999999999999999999999986 999999999
Q ss_pred ChHHHHHHHH--hhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCCCCcccHH
Q 006567 105 CSTVAHIVSY--VSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVS 182 (640)
Q Consensus 105 ~s~~~~~v~~--~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~~~~~g~~~~~ 182 (640)
++..+.++.+ ++...+||+|++.+..+.+++ ++++||+.|++..++.++++++.++||++|++|+.++.+|....+
T Consensus 82 ~s~~~~~~~~~~~~~~~~iP~v~~~~~~~~~~~--~~~~f~~~~~~~~~~~~~~~~l~~~g~~~iaii~~~~~~g~~~~~ 159 (364)
T 3lop_A 82 GTANVEALMREGVLAEARLPLVGPATGASSMTT--DPLVFPIKASYQQEIDKMITALVTIGVTRIGVLYQEDALGKEAIT 159 (364)
T ss_dssp CHHHHHHHHHTTHHHHHTCCEESCSCCCGGGGS--CTTEECCSCCHHHHHHHHHHHHHHTTCCCEEEEEETTHHHHHHHH
T ss_pred CCHHHHhhCchhhHHhcCCcEEEcccCcHhhcc--CCcEEEeCCChHHHHHHHHHHHHHcCCceEEEEEeCchhhHHHHH
Confidence 9999999999 999999999998777776665 799999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecChhhHHHHHHHHHHcCCccCCeEEEEeCccc
Q 006567 183 ALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLA 262 (640)
Q Consensus 183 ~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~il~~a~~~gl~~~~~~~i~~~~~~ 262 (640)
.+++.+++.|+++.....++.+ ..++...++++++.++++|++.++...+..+++++++.|+..+ |++.+.+.
T Consensus 160 ~~~~~~~~~G~~v~~~~~~~~~----~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~~---~i~~~~~~ 232 (364)
T 3lop_A 160 GVERTLKAHALAITAMASYPRN----TANVGPAVDKLLAADVQAIFLGATAEPAAQFVRQYRARGGEAQ---LLGLSSID 232 (364)
T ss_dssp HHHHHHHTTTCCCSEEEEECTT----SCCCHHHHHHHHHSCCSEEEEESCHHHHHHHHHHHHHTTCCCE---EEECTTSC
T ss_pred HHHHHHHHcCCcEEEEEEecCC----CccHHHHHHHHHhCCCCEEEEecCcHHHHHHHHHHHHcCCCCe---EEEeccCC
Confidence 9999999999998766666655 5678889999999999999999999999999999999998653 66655443
Q ss_pred cccCCCCCChhhh-hhccceEEEEE----ccCCchhHHHHHHHHhhhcCCCCCCCchhhhhhhHHHHHHHHHHHHhhcCC
Q 006567 263 YMLDSASLPSETL-ESMQGVLVLRQ----HIPESDRKKNFLSRWKNLTGGSLGMNSYGLYAYDSVWLLAHAIESFFNQGG 337 (640)
Q Consensus 263 ~~~~~~~~~~~~~-~~~~g~~~~~~----~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~ 337 (640)
..... .... ...+|++.... ..+..+..++|.++|+++++....++.++..+|||++++++|++++..
T Consensus 233 ~~~~~----~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~p~~~a~~~yda~~~~~~al~~ag~--- 305 (364)
T 3lop_A 233 PGILQ----KVAGLDAVRGYSLALVMPNPGKSVNPVIREFNRARAAVGAKDVDLSFRAVEGFVAAKVLAEAIRRAGP--- 305 (364)
T ss_dssp HHHHH----HHHCHHHHTTCEEEECSCCTTCTTSHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHHCS---
T ss_pred hHHHH----HHhChhhcCCeEEEEEeCCCCCCCCHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHhCC---
Confidence 21111 1222 45678776652 224677899999999998832127888999999999999999998621
Q ss_pred cccccCCccccccCCCCcccCcccccCchHHHHHHHHhC-cccc-cccceEEccCCCcccccEEEEEEecccEE
Q 006567 338 KISFSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQS-NLVG-LTGPLKFNSDRSLIHAAYDIINVIGTGFR 409 (640)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~-~f~g-~tG~v~Fd~~g~r~~~~~~I~~~~~~~~~ 409 (640)
. .++..|+++|+++ .|+| .+|+++|++++++......|.+++++++.
T Consensus 306 ~-------------------------~~~~~v~~aL~~~~~~~~~~~g~i~f~~~~~~~~~~~~i~~~~~~~~~ 354 (364)
T 3lop_A 306 K-------------------------PTREQVRHALTELRDYDVGGGFTVDFTDRSRPGSHYIELGVVGPNGLV 354 (364)
T ss_dssp S-------------------------CCHHHHHHHHHTCEEEESSTTCEEECSSTTSCSCCCCEEEEECTTSCE
T ss_pred C-------------------------CCHHHHHHHHHhcCCccCCCCeeeecCCCCcCCcceEEEEEEcCCCcc
Confidence 1 1489999999999 6999 99999999988766667788888866653
No 33
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=100.00 E-value=9.3e-35 Score=302.59 Aligned_cols=343 Identities=14% Similarity=0.191 Sum_probs=280.0
Q ss_pred CCeeEEEEEEeecCCc---cchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhc-CcEEEEcC
Q 006567 28 RPAVVNVGALFTLDST---IGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMET-DIVAIIGP 103 (640)
Q Consensus 28 ~~~~i~IG~l~~~~~~---~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~-~v~aiiGp 103 (640)
..++|+||+++|++.. .|.....|+++|++++| |+++++++.|+++++..+.+.+.+++++ +|.+||||
T Consensus 24 a~~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~i~-------G~~i~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~ 96 (386)
T 3sg0_A 24 AQAEIKIGITMSASGPGAALGQPQSKTVAALPKEIG-------GEKVTYFALDDESDPTKAAQNARKLLSEEKVDVLIGS 96 (386)
T ss_dssp -CCCEEEEEEECCSSTTHHHHHHHHHHGGGSCSEET-------TEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEECC
T ss_pred CCCceEEEEEeccCCchhhhcHHHHHHHHHHHHHcC-------CEEEEEEEecCCCCHHHHHHHHHHHHhhcCceEEECC
Confidence 3568999999999854 46678899999999873 7899999999999999999999999987 89999999
Q ss_pred CChHHHHHHHHhhccCCceEEecccCCCCCC--CCCCCcEEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCCCCcccH
Q 006567 104 QCSTVAHIVSYVSNELQVPLLSFGVTDPTLS--SLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGV 181 (640)
Q Consensus 104 ~~s~~~~~v~~~~~~~~iP~is~~~~~~~l~--~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~~~~~g~~~~ 181 (640)
.++..+.++.+++...+||+|++.++++.++ ...++++||+.|++..+++++++++.++||++|++|+.++.+|....
T Consensus 97 ~~s~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~ 176 (386)
T 3sg0_A 97 SLTPVSLPLIDIAAEAKTPLMTMAAAAILVAPMDERRKWVYKVVPNDDIMAEAIGKYIAKTGAKKVGYIGFSDAYGEGYY 176 (386)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEECCCCGGGTCSCCTTGGGEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHH
T ss_pred CCchhHHHHHHHHHhcCCeEEEecCCCccccccCCCCCcEEecCCCcHHHHHHHHHHHHhcCCCEEEEEecCchHHHHHH
Confidence 9999999999999999999999887776666 34678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecChhhHHHHHHHHHHcCCccCCeEEEEeCcc
Q 006567 182 SALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWL 261 (640)
Q Consensus 182 ~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~il~~a~~~gl~~~~~~~i~~~~~ 261 (640)
+.+++.+++.|+++.....++.+ ..++...++++++.++++|++.++..++..+++++++.|+..+ ++..+.+
T Consensus 177 ~~~~~~l~~~g~~v~~~~~~~~~----~~d~~~~~~~~~~~~~dav~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~~ 249 (386)
T 3sg0_A 177 KVLAAAAPKLGFELTTHEVYARS----DASVTGQVLKIIATKPDAVFIASAGTPAVLPQKALRERGFKGA---IYQTHGV 249 (386)
T ss_dssp HHHHHHHHHHTCEECCCEEECTT----CSCCHHHHHHHHHTCCSEEEEECCSGGGHHHHHHHHHTTCCSE---EECCGGG
T ss_pred HHHHHHHHHcCCEEEEEEeeCCC----CCcHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCCc---EEecccc
Confidence 99999999999998766666654 5678889999999999999999998899999999999998642 5554433
Q ss_pred ccccCCCCCChhhhhhccceEEEEEc------cC-C---chhHHHHHHHHhhhcCCCCCCCchhhhhhhHHHHHHHHHHH
Q 006567 262 AYMLDSASLPSETLESMQGVLVLRQH------IP-E---SDRKKNFLSRWKNLTGGSLGMNSYGLYAYDSVWLLAHAIES 331 (640)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~g~~~~~~~------~~-~---~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~ 331 (640)
..... ........+|++....+ .+ . .+..++|.++|+++++ ...++.++..+||+++++++|+++
T Consensus 250 ~~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~-~~~p~~~~~~~yda~~~~~~al~~ 324 (386)
T 3sg0_A 250 ATEEF----IKLGGKDVEGAIFAGEAFSGAEDMPADSPFRKVKARFVDAYKAANG-GAAPTIFGVHLWDSMTLVENAIPA 324 (386)
T ss_dssp CSHHH----HHHHGGGGTTCEEEECHHHHGGGSCTTCHHHHHHHHHHHHHHHHTT-TCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHH----HHhhhhhcCCeEEecccccccccCCCCCcchHHHHHHHHHHHHHhC-CCCCChhHHHHHHHHHHHHHHHHH
Confidence 22100 01223467787776532 12 2 2457999999999983 336788999999999999999999
Q ss_pred HhhcCCcccccCCccccccCCCCcccCcccccCchHHHHHHHHhC-cccccccceEEccCCCc--ccccEEEEEEecccE
Q 006567 332 FFNQGGKISFSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQS-NLVGLTGPLKFNSDRSL--IHAAYDIINVIGTGF 408 (640)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~-~f~g~tG~v~Fd~~g~r--~~~~~~I~~~~~~~~ 408 (640)
+.+.... ..+.++..++++|+++ .|+|++|+++|++++++ ....+.|+++++++|
T Consensus 325 a~~~~~~----------------------g~~~~~~~~~~al~~~~~~~g~~G~~~f~~~~~~g~~~~~~~i~~~~~G~~ 382 (386)
T 3sg0_A 325 ALKAAKP----------------------GTPEFRAAIRDQIEKSKDLALNNGLSNMTPDNHNGYDERSAFLIEIRDGAF 382 (386)
T ss_dssp HHHHCCT----------------------TSHHHHHHHHHHHTTCCSEEETTEEECCCSSCSSCCCGGGCEEEEEETTEE
T ss_pred hhhccCC----------------------CCcchHHHHHHHHHhccCccccceeEEECCCcCCCCCCCceEEEEEECCEE
Confidence 8654210 0122478999999999 89999999999987543 345689999999888
Q ss_pred EEE
Q 006567 409 RMI 411 (640)
Q Consensus 409 ~~v 411 (640)
+.+
T Consensus 383 ~~~ 385 (386)
T 3sg0_A 383 RLK 385 (386)
T ss_dssp EEC
T ss_pred Eec
Confidence 754
No 34
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=100.00 E-value=2.5e-32 Score=283.89 Aligned_cols=347 Identities=13% Similarity=0.050 Sum_probs=277.5
Q ss_pred CCeeEEEEEEeecCCc---cchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHh-cCcEEEEcC
Q 006567 28 RPAVVNVGALFTLDST---IGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFME-TDIVAIIGP 103 (640)
Q Consensus 28 ~~~~i~IG~l~~~~~~---~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~-~~v~aiiGp 103 (640)
.+++++||+++|.+.. .+.....++++|++++|+++|++ |+++++++.|+++++..+.+.+.+++. ++|.+|||+
T Consensus 4 ~~~~~~IG~~~p~sg~~~~~~~~~~~g~~~a~~~~N~~ggi~-G~~l~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~ 82 (385)
T 1pea_A 4 HQERPLIGLLFSETGVTADIERSQRYGALLAVEQLNREGGVG-GRPIETLSQDPGGDPDRYRLCAEDFIRNRGVRFLVGC 82 (385)
T ss_dssp ----CEEEEECCSSSTTHHHHHHHHHHHHHHHHHHHTTTTBT-TBCCEEEEECCTTCHHHHHHHHHHHHHTTCCCEEEEC
T ss_pred CCCCeEEEEEECCCCcchhcCHHHHHHHHHHHHHhccccCCC-CeEEEEEEeCCCCCHHHHHHHHHHHHhhCCcEEEECC
Confidence 3567999999998643 56778999999999999999985 899999999999999999999999996 799999999
Q ss_pred CChHHHHHHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCCCCcccHHH
Q 006567 104 QCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSA 183 (640)
Q Consensus 104 ~~s~~~~~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~~~~~g~~~~~~ 183 (640)
.++..+.++.+++...++|+|++..... ...++++||+.+++..+++++++++.+.+|++|++|+.++.++....+.
T Consensus 83 ~~s~~~~~~~~~~~~~~iP~v~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~ 159 (385)
T 1pea_A 83 YMSHTRKAVMPVVERADALLCYPTPYEG---FEYSPNIVYGGPAPNQNSAPLAAYLIRHYGERVVFIGSDYIYPRESNHV 159 (385)
T ss_dssp CSHHHHHHHHHHHHHTTCEEEECSCCCC---CCCCTTEEECSCCGGGTHHHHHHHHHTTTCSEEEEEEESSHHHHHHHHH
T ss_pred CchHHHHHHHHHHHhcCceEEECCcccC---ccCCCCEEEecCChHHhHHHHHHHHHHccCcEEEEEeCCChHHHHHHHH
Confidence 9988888888999999999998754321 1235789999999999999999999999999999999888888888899
Q ss_pred HHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecChhhHHHHHHHHHHcCCccCCeEEEEeCcccc
Q 006567 184 LNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAY 263 (640)
Q Consensus 184 ~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~il~~a~~~gl~~~~~~~i~~~~~~~ 263 (640)
+++.+++.|+++.....++.. ....++...++++++.++++|++.++...+..+++++++.|+....+.++..+ +..
T Consensus 160 ~~~~l~~~G~~v~~~~~~~~~--~~~~d~~~~~~~l~~~~pdaI~~~~~~~~a~~~~~~~~~~G~~~~~~~~~~~~-~~~ 236 (385)
T 1pea_A 160 MRHLYRQHGGTVLEEIYIPLY--PSDDDLQRAVERIYQARADVVFSTVVGTGTAELYRAIARRYGDGRRPPIASLT-TSE 236 (385)
T ss_dssp HHHHHHHTTCEEEEEEEECSS--CCHHHHHHHHHHHHHHTCSEEEEECCTHHHHHHHHHHHHHHCSSCCCCEEESS-CCH
T ss_pred HHHHHHHcCCEEEEEEeecCC--CCcchHHHHHHHHHHCCCCEEEEecccccHHHHHHHHHHcCCCcCCceEEecc-cch
Confidence 999999999998765555431 23778999999999889999999887888999999999999875444455433 322
Q ss_pred ccCCCCCChhhhhhccceEEEEEcc--CCchhHHHHHHHHhhhcCCCCCCCchhhhhhhHHHHHHHHHHHHhhcCCcccc
Q 006567 264 MLDSASLPSETLESMQGVLVLRQHI--PESDRKKNFLSRWKNLTGGSLGMNSYGLYAYDSVWLLAHAIESFFNQGGKISF 341 (640)
Q Consensus 264 ~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~ 341 (640)
.. .. .......+|++...++. ...+..++|.++|+++|+....++.+++.+|||++++++|++++..
T Consensus 237 ~~-~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~~~~~~~~~~yda~~~~~~Al~~ag~------- 305 (385)
T 1pea_A 237 AE-VA---KMESDVAEGQVVVAPYFSSIDTPASRAFVQACHGFFPENATITAWAEAAYWQTLLLGRAAQAAGN------- 305 (385)
T ss_dssp HH-HT---TSCHHHHTTCEEEESCCTTCSSHHHHHHHHHHHTTSCTTCCCCHHHHHHHHHHHHHHHHHHHHTS-------
T ss_pred HH-HH---hcCchhhCCeEEecccccccCCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHhCC-------
Confidence 11 10 01113567888777554 3467789999999998842235678899999999999999998621
Q ss_pred cCCccccccCCCCcccCcccccCchHHHHHHHHhCcccccccceEEccCCCcccccEEEEEE-ecccEEEEEEE
Q 006567 342 SNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLIHAAYDIINV-IGTGFRMIGYW 414 (640)
Q Consensus 342 ~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~g~tG~v~Fd~~g~r~~~~~~I~~~-~~~~~~~vG~w 414 (640)
.++..++++|++++|+|++|.++|++++++....+.|.++ ++++|+.|...
T Consensus 306 ----------------------~~~~~l~~al~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~~g~~~~v~~~ 357 (385)
T 1pea_A 306 ----------------------WRVEDVQRHLYDIDIDAPQGPVRVERQNNHSRLSSRIAEIDARGVFQVRWQS 357 (385)
T ss_dssp ----------------------CCHHHHHHHHTTCCEEETTEEEEECTTTSCEEBCCEEEEECTTSCEEEEEEC
T ss_pred ----------------------CCHHHHHHHHhhCcccCCCCCeEEcCCCCccccceEEEEEcCCCcEEEeecC
Confidence 1388999999999999999999999966545667888888 67778877654
No 35
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=100.00 E-value=8e-33 Score=285.32 Aligned_cols=341 Identities=16% Similarity=0.156 Sum_probs=278.0
Q ss_pred CCeeEEEEEEeecCCc---cchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhc-CcEEEEcC
Q 006567 28 RPAVVNVGALFTLDST---IGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMET-DIVAIIGP 103 (640)
Q Consensus 28 ~~~~i~IG~l~~~~~~---~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~-~v~aiiGp 103 (640)
..++|+||+++|++.. .|.....++++|++++| |+++++++.|+++++..+.+.+.+++.+ +|.+||||
T Consensus 4 a~~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~i~-------g~~i~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~ 76 (362)
T 3snr_A 4 ETNEITVGISVTTTGPAAALGIPERNALEFVVKEIS-------GHPIKIIVLDDGGDPTAATTNARRFVTESKADVIMGS 76 (362)
T ss_dssp CCCCEEEEEEECCSSTTHHHHHHHHHGGGGSCSEET-------TEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEEC
T ss_pred CCCCeEEEEEecccCchhhcCHHHHHHHHHHHHHhC-------CeEEEEEEecCCCCHHHHHHHHHHHHhccCceEEEcC
Confidence 4568999999999743 46678899999999983 7899999999999999999999999998 89999999
Q ss_pred CChHHHHHHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCCCCcccHHH
Q 006567 104 QCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSA 183 (640)
Q Consensus 104 ~~s~~~~~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~~~~~g~~~~~~ 183 (640)
.++..+.++.+++...++|+|++.+. + +....++++||+.|++..++.++++++.++||+++++|+.++.++....+.
T Consensus 77 ~~s~~~~~~~~~~~~~~ip~v~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~ 154 (362)
T 3snr_A 77 SVTPPSVAISNVANEAQIPHIALAPL-P-ITPERAKWSVVMPQPIPIMGKVLYEHMKKNNVKTVGYIGYSDSYGDLWFND 154 (362)
T ss_dssp SSHHHHHHHHHHHHHHTCCEEESSCC-C-CCTTTTTTEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCccEEEecCC-c-cccCCCCcEEecCCChHHHHHHHHHHHHhcCCCEEEEEecCchHHHHHHHH
Confidence 99999999999999999999998766 3 334557899999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecChhhHHHHHHHHHHcCCccCCeEEEEeCcccc
Q 006567 184 LNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAY 263 (640)
Q Consensus 184 ~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~il~~a~~~gl~~~~~~~i~~~~~~~ 263 (640)
+++.+++.|+++.....++.+ ..++...+.++++.++++|++.+....+..+++++++.|+..+ ++.+..+..
T Consensus 155 ~~~~l~~~g~~v~~~~~~~~~----~~~~~~~~~~l~~~~~dav~~~~~~~~a~~~~~~~~~~g~~~p---~i~~~g~~~ 227 (362)
T 3snr_A 155 LKKQGEAMGLKIVGEERFARP----DTSVAGQALKLVAANPDAILVGASGTAAALPQTTLRERGYNGL---IYQTHGAAS 227 (362)
T ss_dssp HHHHHHHTTCEEEEEEEECTT----CSCCHHHHHHHHHHCCSEEEEECCHHHHHHHHHHHHHTTCCSE---EEECGGGCS
T ss_pred HHHHHHHcCCEEEEEeecCCC----CCCHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCcc---EEeccCcCc
Confidence 999999999998877667655 5677888899998899999999888999999999999998653 355443321
Q ss_pred ccCCCCCChhhhhhccceEEEEEc----------cCCchhHHHHHHHHhhhcCCCCCCCchhhhhhhHHHHHHHHHHHHh
Q 006567 264 MLDSASLPSETLESMQGVLVLRQH----------IPESDRKKNFLSRWKNLTGGSLGMNSYGLYAYDSVWLLAHAIESFF 333 (640)
Q Consensus 264 ~~~~~~~~~~~~~~~~g~~~~~~~----------~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~ 333 (640)
... ........+|++....+ .+..+..++|.++|+++++ ...++.++..+|||++++++|++++.
T Consensus 228 ~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~-~~~p~~~~~~~yda~~~~~~al~~a~ 302 (362)
T 3snr_A 228 MDF----IRIAGKSAEGVLMASGPVMDPEGQDDTALTKKPGMALVKVYEEKYG-PSSRSQFAGHSYDAFKVLERVVPVAL 302 (362)
T ss_dssp HHH----HHHHGGGGTTCEEEECGGGCSTTSCTTCTTHHHHHHHHHHHHHHHC-TTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH----HHHhHHHhCCCEEecccccccccCCCcCcccHHHHHHHHHHHHHhC-CCCCCchhHhHHHHHHHHHHHHHHhh
Confidence 100 01223467787776532 1233568999999999883 33678999999999999999999986
Q ss_pred hcCCcccccCCccccccCCCCcccCcccccCchHHHHHHHHhC-cccccccceEEccCCCc--ccccEEEEEEecccEEE
Q 006567 334 NQGGKISFSNDSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQS-NLVGLTGPLKFNSDRSL--IHAAYDIINVIGTGFRM 410 (640)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~-~f~g~tG~v~Fd~~g~r--~~~~~~I~~~~~~~~~~ 410 (640)
+..+. ..+.++..++++|+++ .|+|++|+++|++++++ .+..+.|+++++++|+.
T Consensus 303 ~~~~~----------------------g~~~~~~~~~~al~~~~~~~g~~G~~~f~~~~~~g~~~~~~~i~~~~~G~~~~ 360 (362)
T 3snr_A 303 KKAKP----------------------GTQEFREALREAFLTEKDIAASQGVYNFTETDRYGLDDRSRILLTVKNGKYVI 360 (362)
T ss_dssp HHCCT----------------------TSHHHHHHHHHHHHHCCCEECSSCEECCCSSCSSCCCGGGCEEEEEETTEEEE
T ss_pred ccccC----------------------CCcchHHHHHHHHHhcCCcccceeeEEeCCCCCCCCCCCCeEEEEEECCEEEE
Confidence 54210 1122478999999999 89999999999987543 34668999999888875
Q ss_pred E
Q 006567 411 I 411 (640)
Q Consensus 411 v 411 (640)
|
T Consensus 361 v 361 (362)
T 3snr_A 361 V 361 (362)
T ss_dssp C
T ss_pred c
Confidence 4
No 36
>2h4a_A YRAM (HI1655); perplasmic binding protein, lipoprotein; 1.35A {Haemophilus influenzae} PDB: 3ckm_A
Probab=99.95 E-value=1.5e-26 Score=231.64 Aligned_cols=307 Identities=11% Similarity=0.072 Sum_probs=238.8
Q ss_pred EEEEEeecCC---ccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcCcEEEEcCCChHHH
Q 006567 33 NVGALFTLDS---TIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTVA 109 (640)
Q Consensus 33 ~IG~l~~~~~---~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aiiGp~~s~~~ 109 (640)
|||+++|++. ..|...+.|+++|. .|.+++++++|+.+++ +...+.++++++|.+||||.++..+
T Consensus 2 kIG~llplSG~~a~~G~~~~~G~~lA~----------~G~~i~l~~~D~~~~~--a~~~~~~l~~~~v~~IiGp~~s~~~ 69 (325)
T 2h4a_A 2 QIGLLLPLSGDGQILGTTIQSGFNDAK----------GNSTIPVQVFDTSMNS--VQDIIAQAKQAGIKTLVGPLLKQNL 69 (325)
T ss_dssp CEEEEECCSSTTHHHHHHHHHHHHHHH----------TTCCSCEEEEETTTSC--HHHHHHHHHHTTCCEEECCCSHHHH
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHhc----------cCCCceEEEEECCCCh--HHHHHHHHHHCCCCEEEeeCCHHHH
Confidence 6999999984 45788899999986 2788999999999987 5667778888899999999999999
Q ss_pred HHHHHhh-ccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCCCCcccHHHHHHHH
Q 006567 110 HIVSYVS-NELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKL 188 (640)
Q Consensus 110 ~~v~~~~-~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~~~~~g~~~~~~~~~~~ 188 (640)
.++.+.+ ...+||+|++.+.. ......+.++||+ ++.++++++++++...|.+++++|+.+++||+...+.|++.+
T Consensus 70 ~a~~~~~~~~~~vp~i~~~~~~-~~~~~~~~~~f~~--~~~~~~~~~a~~a~~~g~k~vail~~~~~yG~~~~~~F~~~~ 146 (325)
T 2h4a_A 70 DVILADPAQIQGMDVLALNATP-NSRAIPQLCYYGL--SPEDEAESAANKMWNDGVRNPLVAMPQNDLGQRVGNAFNVRW 146 (325)
T ss_dssp HHHHHCGGGGTTCEEEESCCCS-SCCCCTTEEECCC--CHHHHHHHHHHHHHHTTCCSCEEEEESSHHHHHHHHHHHHHH
T ss_pred HHHHhhhhccCCCcEEECCCCc-cccCCCCeEEEEC--CHHHHHHHHHHHHHHcCCCeEEEEEcCCcHHHHHHHHHHHHH
Confidence 9999998 77899999976543 2222233455555 455678999999888899999999999999999999999999
Q ss_pred hhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecChhhHHHHHHHHHHcCCccCCeEEEEeCccc--cccC
Q 006567 189 AERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLA--YMLD 266 (640)
Q Consensus 189 ~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~il~~a~~~gl~~~~~~~i~~~~~~--~~~~ 266 (640)
++.|.+|+..+.+... .|+...++++ ..++|+|++.+...++..+.++++..+. +--.+.++.+. +..
T Consensus 147 ~~~Gg~vv~~~~y~~~-----~d~~~~l~~i-~~~pDaV~~~~~~~~~~~i~~~~~~~g~---~~pl~~~~~~~~~s~~- 216 (325)
T 2h4a_A 147 QQLAGTDANIRYYNLP-----ADVTYFVQEN-NSNTTALYAVASPTELAEXKGYLTNIVP---NLAIYASSRASASATN- 216 (325)
T ss_dssp HHHHSSCCEEEEESST-----THHHHHHHHS-TTCCCEEEECCCHHHHHHHHHHHTTTCT---TCEEEECGGGCCHHHH-
T ss_pred HHcCCCcceeEecCCH-----HHHHHHHHhc-CCCCCEEEEeCCHHHHhhhhhhHhhcCC---CCCEEEeccccccCCC-
Confidence 9999998887777642 5899999998 4789999999999998888888876643 33456666554 221
Q ss_pred CCCCChhhhhhccceEEEE-Ec--cCCchhHHHHHHHHhhhcCCCCCCCchhhhhhhHHHHHHHHHHHHhhcCCcccccC
Q 006567 267 SASLPSETLESMQGVLVLR-QH--IPESDRKKNFLSRWKNLTGGSLGMNSYGLYAYDSVWLLAHAIESFFNQGGKISFSN 343 (640)
Q Consensus 267 ~~~~~~~~~~~~~g~~~~~-~~--~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~ 343 (640)
.........+|++... |+ .++.+.+++|.++|+..+ .+....+++|||+.++.+. .++.
T Consensus 217 ---~~~~~~~~~~Gv~f~~~p~~~~~~~~~~~~f~~~~~~~~----~~~rl~AlgyDA~~l~~~l-~~l~---------- 278 (325)
T 2h4a_A 217 ---TNTDFIAQMNGVQFSDIPFFKDTNSPQYQKLAKSTGGEY----QLMRLYAMGADAWLLINQF-NELR---------- 278 (325)
T ss_dssp ---TCHHHHHHTTTCEEEECGGGSCCCSHHHHHHHHHTTTCH----HHHHHHHHHHHHHHHHHTH-HHHH----------
T ss_pred ---CCchhhhhcCCcEEEccccccCCCcHHHHHHHhccCCCc----chHHHHHHHHHHHHHHHHH-HHHh----------
Confidence 1133456788987765 33 345667889988876543 2445679999999986654 2221
Q ss_pred CccccccCCCCcccCcccccCchHHHHHHHHhCcccccccceEEccCCCcccccEEEEEEecccEEEE
Q 006567 344 DSRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLIHAAYDIINVIGTGFRMI 411 (640)
Q Consensus 344 ~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~g~tG~v~Fd~~g~r~~~~~~I~~~~~~~~~~v 411 (640)
.+.+..|.|+||.++||++|+ ....+.+.+++++.+++|
T Consensus 279 ----------------------------~~~~~~~~G~tG~l~~~~~g~-~~R~l~~~~~~~G~~~~~ 317 (325)
T 2h4a_A 279 ----------------------------QVPGYRLSGLTGILSADTNCN-VERDMTWYQYQDGAIVPV 317 (325)
T ss_dssp ----------------------------HSTTCCEEETTEEEEECTTCB-EEEECEEEEEETTEEEEC
T ss_pred ----------------------------hCCCCeeccCceeEEECCCCe-EEEeechhhccCCeEEEe
Confidence 123357999999999999998 578889999999988765
No 37
>3ckm_A YRAM (HI1655), LPOA; periplasmic-binding protein, lipoprotein, unliganded, biosynthetic protein; 1.35A {Haemophilus influenzae} SCOP: c.93.1.1
Probab=99.94 E-value=2.1e-26 Score=233.22 Aligned_cols=312 Identities=12% Similarity=0.064 Sum_probs=236.3
Q ss_pred EEEEEEeecCC---ccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcCcEEEEcCCChHH
Q 006567 32 VNVGALFTLDS---TIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTV 108 (640)
Q Consensus 32 i~IG~l~~~~~---~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aiiGp~~s~~ 108 (640)
+|||+++|++. ..|...+.|+++|++ |.+++++++|++++|..++ +..+.+++|.+||||.+|..
T Consensus 3 ~kIG~l~PlSG~~a~~G~~~~~g~~lA~~----------g~~i~l~~~D~~~~~~~aa--~~~~~~~~v~~iiGp~~s~~ 70 (327)
T 3ckm_A 3 SQIGLLLPLSGDGQILGTTIQSGFNDAKG----------NSTIPVQVFDTSMNSVQDI--IAQAKQAGIKTLVGPLLKQN 70 (327)
T ss_dssp CCEEEEECCSSTTHHHHHHHHHHHHHHHT----------TCCSCEEEEETTTSCHHHH--HHHHHHTTCCEEECCCSHHH
T ss_pred EEEEEEECCCCchHHHHHHHHHHHHHhCC----------CCCceEEEEeCCCCHHHHH--HHHHHHcCCeEEEEcccccc
Confidence 68999999984 457788899998863 5678899999999986653 44456679999999999988
Q ss_pred HHHHHH-hhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCCCCcccHHHHHHH
Q 006567 109 AHIVSY-VSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDK 187 (640)
Q Consensus 109 ~~~v~~-~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~~~~~g~~~~~~~~~~ 187 (640)
+.++.. +.....+|+++.+.++. . ...+++||+.+++..+++++++++...+++++++++.+++||+...+.|++.
T Consensus 71 ~~a~~~~~~~~~~v~~~~~~~~~~-~--~~~~~~f~~~~~~~~~~~~~a~~~~~~g~k~~~ii~~~~~yg~~~~~~f~~~ 147 (327)
T 3ckm_A 71 LDVILADPAQIQGMDVLALNATPN-S--RAIPQLCYYGLSPEDEAESAANKMWNDGVRNPLVAMPQNDLGQRVGNAFNVR 147 (327)
T ss_dssp HHHHHHCGGGGTTCEEEESCCCTT-C--CCCTTEEECCCCHHHHHHHHHHHHHHTTCCSCEEEEESSHHHHHHHHHHHHH
T ss_pred chhhHHHHHhccCceEeccCcCcc-c--ccCCCeEEEecChHHHHHHHHHHHHhcCCeeEEEEecCChHHHHHHHHHHHH
Confidence 777655 45566777776544332 2 2347899999999999999999999999999999999999999999999999
Q ss_pred HhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecChhhHHHHHHHHHHcCCccCCeEEEEeCccccccCC
Q 006567 188 LAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATDWLAYMLDS 267 (640)
Q Consensus 188 ~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~il~~a~~~gl~~~~~~~i~~~~~~~~~~~ 267 (640)
+++.|.+|.....++.. +....+.+++..++|+|++.+...++..+++++++.|+.. .++.++.+......
T Consensus 148 ~~~~Gg~vv~~~~~~~~------~~~~~~~~~~~~~~dai~~~~~~~~~~~i~~q~~~~g~~~---~~~~~~~~~~~~~~ 218 (327)
T 3ckm_A 148 WQQLAGTDANIRYYNLP------ADVTYFVQENNSNTTALYAVASPTELAEMKGYLTNIVPNL---AIYASSRASASATN 218 (327)
T ss_dssp HHHHHSSCCEEEEESST------THHHHHHHHSCTTCCEEEECCCHHHHHHHHHHHTTTCTTC---EEEECGGGCCHHHH
T ss_pred HHHCCCeEEEEEECCCC------chhhHHHHHhccCCcEEEEEcCHHHHHHHHHHHHhhhccC---CEEeeeccccccch
Confidence 99999999888777644 2335567788899999999999999999999999988643 45665543322111
Q ss_pred CCCChhhhhhccceEEEEE-c--cCCchhHHHHHHHHhhhcCCCCCCCchhhhhhhHHHHHHHHHHHHhhcCCcccccCC
Q 006567 268 ASLPSETLESMQGVLVLRQ-H--IPESDRKKNFLSRWKNLTGGSLGMNSYGLYAYDSVWLLAHAIESFFNQGGKISFSND 344 (640)
Q Consensus 268 ~~~~~~~~~~~~g~~~~~~-~--~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~~~~~~~~~~ 344 (640)
..........|++.... + .++.+.+++|.++|+..++ +..+.+++|||+.++.++.+..
T Consensus 219 --~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~----~~~~~AlgyDA~~l~~~l~~~~------------ 280 (327)
T 3ckm_A 219 --TNTDFIAQMNGVQFSDIPFFKDTNSPQYQKLAKSTGGEYQ----LMRLYAMGADAWLLINQFNELR------------ 280 (327)
T ss_dssp --TCHHHHHHTTTCEEEECGGGGCCCSHHHHHHHHHTTTCHH----HHHHHHHHHHHHHHHHTHHHHH------------
T ss_pred --hcchhhhhcCCeEEEcccccCCCCCHHHHHHHHHHHhhcC----CCchHHHHHHHHHHHHHHHHhc------------
Confidence 01122234566655543 2 4557788999988887651 2346788999998876544321
Q ss_pred ccccccCCCCcccCcccccCchHHHHHHHHhCcccccccceEEccCCCcccccEEEEEEecccEEEEEE
Q 006567 345 SRLKTMEGGNLHLGAMSIFDDGMLLLGNILQSNLVGLTGPLKFNSDRSLIHAAYDIINVIGTGFRMIGY 413 (640)
Q Consensus 345 ~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~g~tG~v~Fd~~g~r~~~~~~I~~~~~~~~~~vG~ 413 (640)
.+....|.|+||.++||++|+ ....+.+.+++++.+++|..
T Consensus 281 ---------------------------~~~~~~f~G~tG~i~fd~~G~-~~r~l~~~~~~~G~~vpv~d 321 (327)
T 3ckm_A 281 ---------------------------QVPGYRLSGLTGILSADTNCN-VERDMTWYQYQDGAIVPVVD 321 (327)
T ss_dssp ---------------------------HSTTCCEEETTEEEEECTTCB-EEEECEEEEEETTEEEECC-
T ss_pred ---------------------------CCCCCCceeceEEEEECCCCC-CccccEEEEEECCEEEEccc
Confidence 223346999999999999997 56778899999999998864
No 38
>1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1
Probab=99.48 E-value=2.9e-14 Score=142.90 Aligned_cols=119 Identities=25% Similarity=0.482 Sum_probs=88.0
Q ss_pred CCCeEEEEeecCCCccceEEeec------CCcceeeeeHHHHHHHHHhCCCCccEEEEEcCCCC-----C-CCCHhhHHH
Q 006567 463 NGKLLKIGVPNRASYREFVSKVR------GSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGH-----K-NPSYTQLVD 530 (640)
Q Consensus 463 ~~~~l~v~~~~~~~~~p~~~~~~------~~~~~~G~~~dl~~~i~~~l~~~~~~~~~~~~~~~-----~-~~~~~~~~~ 530 (640)
++++|+|++.. ++||.+.+. +++++.|+++||+++|++++|++ |++...++++ . +.+|++++.
T Consensus 11 ~~~~l~V~~~~---~~P~~~~~~~~~~~~~~g~~~G~~vdl~~~ia~~lg~~--~~~~~~~~~~~g~~~~~~~~~~~~~~ 85 (312)
T 1yae_A 11 SNRSLIVTTIL---EEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFT--YEIRLVEDGKYGAQDDVNGQWNGMVR 85 (312)
T ss_dssp CSCEEEEEECC---BTTTBEECCCSSCCCGGGGEESHHHHHHHHHHHHHCCE--EEEEECSSCCCCCBCTTTCCBCSHHH
T ss_pred cCceEEEEEec---cCCeeEEeccccccCCCceEEEEEHHHHHHHHHHcCCe--EEEEecCCCccceeccCCCcchHHHH
Confidence 46789999974 477877652 37899999999999999999999 4554432211 1 478999999
Q ss_pred HHHcCcccEEEeeeeeeccccceEEeCccccccceEEEEecCC-CCcCcceeccccc
Q 006567 531 SITTGVFDAVVGDITIVTNRTKIVDFSQPYAASGLVVVVPFRK-LNTGAWAFLRPFS 586 (640)
Q Consensus 531 ~l~~~~~D~~~~~~~~t~~R~~~vdfs~p~~~~~~~il~~~~~-~~~~~~~~l~pf~ 586 (640)
+|.+|++|++++++++|++|++.++||.||+..+.+++++++. ...+++.|+.||+
T Consensus 86 ~l~~g~~D~~~~~~~~t~eR~~~~~fs~py~~~~~~~~~~~~~~~~~~~~~~~~pf~ 142 (312)
T 1yae_A 86 ELIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFSFLNGGS 142 (312)
T ss_dssp HHHTTSCSEECSSCBCCHHHHHHEEEEEEEEEECEEEEEEC----------------
T ss_pred HHhCCCcCEEeecceechhhcceEEecceeeecceEEEEeCCccccccceeeecccc
Confidence 9999999999999999999999999999999999999999886 5678899999997
No 39
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A
Probab=99.43 E-value=9.7e-14 Score=133.62 Aligned_cols=111 Identities=13% Similarity=0.149 Sum_probs=89.0
Q ss_pred CCCeEEEEeecCCCccceEEeecCCcceeeeeHHHHHHHHHhC-CCCccEEEEEcCCCCCCCCHhhHHHHHHcCcccEEE
Q 006567 463 NGKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLL-PYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVV 541 (640)
Q Consensus 463 ~~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~~~ 541 (640)
+.++|+|++. +.|+||.+.++ ++++.||++||+++|+++| |++++|. + ..|.+++..|.+|++|+++
T Consensus 7 ~~~tl~vg~~--~~~pP~~~~d~-~G~~~G~~vdl~~~ia~~l~g~~~~~~--~-------~~~~~~~~~l~~g~~D~~~ 74 (243)
T 4gvo_A 7 KVQTITVGTG--TQFPNVCFLDE-NGKLTGYDVELVKEIDKRLPGYKFKFK--T-------MDFSNLLVSLGAGKVDIVA 74 (243)
T ss_dssp -CEEEEEEEC--SEETTTEEECT-TSCEESHHHHHHHHHHHTCTTEEEEEE--E-------CCGGGHHHHHHTTSCSEEC
T ss_pred cCCeEEEEEC--CCCCCeEEECC-CCcEEEhHHHHHHHHHHhccCCeEEEE--E-------CCHHHHHHHHHCCCCCEec
Confidence 4578999996 57999999875 7899999999999999998 8885554 4 3499999999999999999
Q ss_pred eeeeeeccccceEEeCccccccceE-EEEecCCCCcCcceecccc
Q 006567 542 GDITIVTNRTKIVDFSQPYAASGLV-VVVPFRKLNTGAWAFLRPF 585 (640)
Q Consensus 542 ~~~~~t~~R~~~vdfs~p~~~~~~~-il~~~~~~~~~~~~~l~pf 585 (640)
+++++|++|++.++||.|++..... +++++.......+..|+..
T Consensus 75 ~~~~~t~eR~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~~dL~g~ 119 (243)
T 4gvo_A 75 HQMEKSKEREKKFLFNDVAYNNFPLQLTVLDSNNSINSTKDLAGK 119 (243)
T ss_dssp SCCBCCHHHHHHSEECSSCCEECCEEEEEETTCCSCSSGGGGTTC
T ss_pred ccCCCCHHHhhhhhhhhhhcccccceEEEeccccccCchHHhcCC
Confidence 9999999999999999998776554 4445444444445555443
No 40
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A
Probab=99.42 E-value=1.1e-13 Score=137.05 Aligned_cols=104 Identities=22% Similarity=0.450 Sum_probs=83.8
Q ss_pred CeEEEEeecCCCccceEEeecCCcceeeeeHHHHHHHHHhCCCCccEEEEEcCCCC------CC----CCHhhHHHHHHc
Q 006567 465 KLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGH------KN----PSYTQLVDSITT 534 (640)
Q Consensus 465 ~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l~~~~~~~~~~~~~~~------~~----~~~~~~~~~l~~ 534 (640)
++|+|++. ..|+||.+.+. ++++.||++||+++|++++|++ |++...+|++ .| +.|++++++|.+
T Consensus 41 ~~l~vg~~--~~~~P~~~~~~-~g~~~G~~vDll~~ia~~lg~~--~~~~~~~d~~~g~~~~~~~~~~~~w~~~~~~l~~ 115 (292)
T 1pb7_A 41 KVICTGPN--DTSPGSPRHTV-PQCCYGFCIDLLIKLARTMNFT--YEVHLVADGKFGTQERVNNSNKKEWNGMMGELLS 115 (292)
T ss_dssp CEEEEEEC----------CEE-EEEEESHHHHHHHHHHHHHTCC--EEEEECTTCCCCCEEECTTSSCEEECHHHHHHHH
T ss_pred ceeecccC--CCCCCcccccc-ccCcceeHHHHHHHHHHHcCce--EEEEEecCCcccccccccccccCcHHHHHHHHHc
Confidence 57888876 46788877665 7899999999999999999999 6666655443 12 479999999999
Q ss_pred CcccEEEeeeeeeccccceEEeCccccccceEEEEecCC
Q 006567 535 GVFDAVVGDITIVTNRTKIVDFSQPYAASGLVVVVPFRK 573 (640)
Q Consensus 535 ~~~D~~~~~~~~t~~R~~~vdfs~p~~~~~~~il~~~~~ 573 (640)
|++|++++++++|++|++.++||.||+.++++++++++.
T Consensus 116 g~~D~~~~~~~~t~~R~~~~~fs~Py~~~~~~i~~~~~~ 154 (292)
T 1pb7_A 116 GQADMIVAPLTINNERAQYIEFSKPFKYQGLTILVKKGT 154 (292)
T ss_dssp TSCSEECSSCBCCHHHHTTEEECSCSEEEEEEEEEETTC
T ss_pred CCcCEEEeeeEecHHHhcceEechhhHhcCeEEEEECCc
Confidence 999999999999999999999999999999999999876
No 41
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A*
Probab=99.42 E-value=1.3e-13 Score=132.66 Aligned_cols=98 Identities=23% Similarity=0.367 Sum_probs=87.1
Q ss_pred CeEEEEeecCCCccceEEee--cCCcceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHhhHHHHHHcCcccEEEe
Q 006567 465 KLLKIGVPNRASYREFVSKV--RGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVG 542 (640)
Q Consensus 465 ~~l~v~~~~~~~~~p~~~~~--~~~~~~~G~~~dl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~~~~ 542 (640)
++|+|++. +.|+||.+.. ++++++.||++||+++|++++|+++ ++++ ..|.+++..|.+|++|++++
T Consensus 12 g~L~Vg~~--~~~pP~~~~~~~d~~g~~~G~~vdl~~~ia~~lg~~~--~~~~-------~~~~~~~~~l~~g~~d~~~~ 80 (243)
T 4h5g_A 12 GKLVVATS--PDYAPFEFQSLVDGKNQVVGADIDMAQAIADELGVKL--EILS-------MSFDNVLTSLQTGKADLAVA 80 (243)
T ss_dssp TEEEEEEC--CCBTTTBEEEEETTEEEEESHHHHHHHHHHHHHTSEE--EEEE-------CCGGGHHHHHHTTSCSEECS
T ss_pred CEEEEEEC--CCCCCcEeeeccCCCCcEEEeHHHHHHHHHHHhCCce--EEec-------ccHHHHHHHHHcCCCCcccc
Confidence 57999996 5789998853 4578999999999999999999994 4444 34999999999999999999
Q ss_pred eeeeeccccceEEeCccccccceEEEEecCC
Q 006567 543 DITIVTNRTKIVDFSQPYAASGLVVVVPFRK 573 (640)
Q Consensus 543 ~~~~t~~R~~~vdfs~p~~~~~~~il~~~~~ 573 (640)
++++|++|++.++||.||+..+.++++++..
T Consensus 81 ~~~~t~eR~~~~~fs~py~~~~~~~~v~~~~ 111 (243)
T 4h5g_A 81 GISATDERKEVFDFSIPYYENKISFLVHKAD 111 (243)
T ss_dssp SCBCCHHHHTTEEECSCSBCCCEEEEEEGGG
T ss_pred cccCChhHccEEEccCccccCcccccccccc
Confidence 9999999999999999999999999998765
No 42
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ...
Probab=99.40 E-value=2.1e-13 Score=132.58 Aligned_cols=107 Identities=21% Similarity=0.392 Sum_probs=89.6
Q ss_pred CCeEEEEeecCCCccceEEeecC------CcceeeeeHHHHHHHHHhCCCCccEEEEEcC-CCC---CCCCHhhHHHHHH
Q 006567 464 GKLLKIGVPNRASYREFVSKVRG------SDMFQGFCIDVFTAAVNLLPYAVPYQFVAFG-DGH---KNPSYTQLVDSIT 533 (640)
Q Consensus 464 ~~~l~v~~~~~~~~~p~~~~~~~------~~~~~G~~~dl~~~i~~~l~~~~~~~~~~~~-~~~---~~~~~~~~~~~l~ 533 (640)
+++|+|++.. ++||.+.+.. ++++.||++||+++|++++|++++|..++.+ .+. .+.+|.+++.+|.
T Consensus 3 ~~~l~v~~~~---~~P~~~~~~~~~~~~~~g~~~G~~vdl~~~ia~~lg~~~~~~~~p~~~~g~~~~~~~~~~~~~~~l~ 79 (259)
T 3g3k_A 3 NRSLIVTTIL---EEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTHLGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELI 79 (259)
T ss_dssp CCCEEEEECC---BTTTBEECCCSSCCCGGGGEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCBCTTTCCBCHHHHHHH
T ss_pred CcEEEEEEec---CCCeEEEeecccccCCCceeeeEHHHHHHHHHHHcCCeEEEEECCCCCcCcccCCCCcchHHHHHHh
Confidence 5789999974 4677777653 5899999999999999999999555444321 111 1468999999999
Q ss_pred cCcccEEEeeeeeeccccceEEeCccccccceEEEEecCC
Q 006567 534 TGVFDAVVGDITIVTNRTKIVDFSQPYAASGLVVVVPFRK 573 (640)
Q Consensus 534 ~~~~D~~~~~~~~t~~R~~~vdfs~p~~~~~~~il~~~~~ 573 (640)
+|++|++++++++|++|.+.++||.||+..+.+++++++.
T Consensus 80 ~g~~D~~~~~~~~t~eR~~~~~fs~py~~~~~~~~~~~~~ 119 (259)
T 3g3k_A 80 DHKADLAVAPLAITYVREEVIDFSKPFMTLGISILYRKGT 119 (259)
T ss_dssp TTSCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEESSS
T ss_pred cCcccEEEeeeEecccccceEeeeeeeeeCCEEEEEeCCc
Confidence 9999999999999999999999999999999999999876
No 43
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A*
Probab=99.36 E-value=6.9e-13 Score=130.83 Aligned_cols=111 Identities=23% Similarity=0.418 Sum_probs=90.3
Q ss_pred cCCCCeEEEEeecCCCccceEEeec---CCcceeeeeHHHHHHHHHhCCCCccEEEEEcCCCC----CCCCHhhHHHHHH
Q 006567 461 PNNGKLLKIGVPNRASYREFVSKVR---GSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGH----KNPSYTQLVDSIT 533 (640)
Q Consensus 461 ~~~~~~l~v~~~~~~~~~p~~~~~~---~~~~~~G~~~dl~~~i~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~l~ 533 (640)
|.+|++|||+++..++|++|..... +++++.|+++||++++++++|++ |++..+++++ .+.+|++++.+|.
T Consensus 25 ~~~~~~lrvgv~~~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~i~~~lg~~--~~~~~~~~~~~g~~~~~~~~~~~~~l~ 102 (284)
T 2a5s_A 25 PLTETCVRNTVPCRKFVKINNSTNEGMNVKKCCKGFCIDILKKLSRTVKFT--YDLYLVTNGKHGKKVNNVWNGMIGEVV 102 (284)
T ss_dssp CC-CCCCTTCEEEEEEEESSSSSSCEEEEEEEEESHHHHHHHHHHHHHTCC--EEEEECCSSSSCCEETTEECHHHHHHH
T ss_pred CCCCccccccccccccccccccccCCCCCcceeeEEhHHHHHHHHHHCCCC--EEEEEccCCccCcccCCCHHHHHHHHh
Confidence 3468889998887666666533221 12478999999999999999998 5555554432 3568999999999
Q ss_pred cCcccEEEeeeeeeccccceEEeCccccccceEEEEecCC
Q 006567 534 TGVFDAVVGDITIVTNRTKIVDFSQPYAASGLVVVVPFRK 573 (640)
Q Consensus 534 ~~~~D~~~~~~~~t~~R~~~vdfs~p~~~~~~~il~~~~~ 573 (640)
+|++|++++++++|++|.+.++||.||+.++.+++++++.
T Consensus 103 ~g~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~ 142 (284)
T 2a5s_A 103 YQRAVMAVGSLTINEERSEVVDFSVPFVETGISVMVSRGT 142 (284)
T ss_dssp TTSCSEECSSCBCCHHHHTTEEECCCCEEECEEEEEETTC
T ss_pred cCCcCEEEEEEEEeccccceEEeccCchhcCEEEEEECCc
Confidence 9999999999999999999999999999999999999876
No 44
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A
Probab=99.36 E-value=4.4e-13 Score=132.96 Aligned_cols=83 Identities=28% Similarity=0.588 Sum_probs=74.1
Q ss_pred ceeeeeHHHHHHHHHhCCCCccEEEEEcCCCC----CCCCHhhHHHHHHcCcccEEEeeeeeeccccceEEeCccccccc
Q 006567 489 MFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGH----KNPSYTQLVDSITTGVFDAVVGDITIVTNRTKIVDFSQPYAASG 564 (640)
Q Consensus 489 ~~~G~~~dl~~~i~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~D~~~~~~~~t~~R~~~vdfs~p~~~~~ 564 (640)
++.||++||+++|++++|++ |+++.+++++ .+..|++++++|.+|++|++++++++|++|++.++||.||+..+
T Consensus 67 ~~~G~~vdll~~ia~~lg~~--~~~~~~~~~~~g~~~~~~w~~~~~~l~~g~~D~~~~~~~~t~eR~~~~~fs~P~~~~~ 144 (294)
T 2rc8_A 67 CCYGYCIDLLEQLAEDMNFD--FDLYIVGDGKYGAWKNGHWTGLVGDLLSGTANMAVTSFSINTARSQVIDFTSPFFSTS 144 (294)
T ss_dssp EEESHHHHHHHHHHHHHTEE--EEEEECTTCCCCCEETTEECHHHHHHHHTSCSEECSSCBCCHHHHTTSEECSCSEEEE
T ss_pred CceEEhHHHHHHHHHHcCCc--EEEEECCCCcccccCCCCHHHHHHHHHCCCcCEEEeccccCHhHhceEEEccchHhcc
Confidence 47999999999999999998 5665555443 34679999999999999999999999999999999999999999
Q ss_pred eEEEEecCC
Q 006567 565 LVVVVPFRK 573 (640)
Q Consensus 565 ~~il~~~~~ 573 (640)
.+++++++.
T Consensus 145 ~~i~~~~~~ 153 (294)
T 2rc8_A 145 LGILVRTRG 153 (294)
T ss_dssp EEEEEETTS
T ss_pred eEEEEECCC
Confidence 999999876
No 45
>2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A
Probab=99.33 E-value=2e-12 Score=125.99 Aligned_cols=105 Identities=25% Similarity=0.394 Sum_probs=88.7
Q ss_pred CCeEEEEeecCCCccceEEeecC----CcceeeeeHHHHHHHHHhCCCCccEEEEEcCCCC-----CCCCHhhHHHHHHc
Q 006567 464 GKLLKIGVPNRASYREFVSKVRG----SDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGH-----KNPSYTQLVDSITT 534 (640)
Q Consensus 464 ~~~l~v~~~~~~~~~p~~~~~~~----~~~~~G~~~dl~~~i~~~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~ 534 (640)
|++|+|++.. ++||.+.+++ ++++.|+++||++++++++|++ +++...++++ .+..|++++.+|.+
T Consensus 2 ~~~l~v~~~~---~pP~~~~~~~~~g~~g~~~G~~~dl~~~i~~~lg~~--~~~~~~~~~~~g~~~~~~~~~~~~~~l~~ 76 (265)
T 2v3u_A 2 GVVLRVVTVL---EEPFVMVSENVLGKPKKYQGFSIDVLDALSNYLGFN--YEIYVAPDHKYGSPQEDGTWNGLVGELVF 76 (265)
T ss_dssp CCEEEEEECC---BTTTBEEECCSTTCCCEEESHHHHHHHHHHHHHTCE--EEEEECTTCCCCCBCTTSCBCHHHHHHHT
T ss_pred CeEEEEEEec---cCCeEEEecCCCCCcceEeEEEHHHHHHHHHHcCCc--EEEEEccCCcccccCCCCCcchHHHHHHc
Confidence 6889999974 4788887642 1789999999999999999999 5555432221 24679999999999
Q ss_pred CcccEEEeeeeeeccccceEEeCccccccceEEEEecCC
Q 006567 535 GVFDAVVGDITIVTNRTKIVDFSQPYAASGLVVVVPFRK 573 (640)
Q Consensus 535 ~~~D~~~~~~~~t~~R~~~vdfs~p~~~~~~~il~~~~~ 573 (640)
|++|++++++++|++|.+.++||.||+..+.+++++++.
T Consensus 77 g~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~ 115 (265)
T 2v3u_A 77 KRADIGISALTITPDRENVVDFTTRYMDYSVGVLLRRGT 115 (265)
T ss_dssp TSCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEETTC
T ss_pred CCcCeEEeeeEeehhhhccccccceeeeccEEEEEECCC
Confidence 999999989999999999999999999999999998866
No 46
>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ...
Probab=99.33 E-value=1e-12 Score=128.07 Aligned_cols=105 Identities=18% Similarity=0.447 Sum_probs=88.3
Q ss_pred CCeEEEEeecCCCccceEEeecC------CcceeeeeHHHHHHHHHhCCCCccEEEEEcCC-----CCCCC-CHhhHHHH
Q 006567 464 GKLLKIGVPNRASYREFVSKVRG------SDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGD-----GHKNP-SYTQLVDS 531 (640)
Q Consensus 464 ~~~l~v~~~~~~~~~p~~~~~~~------~~~~~G~~~dl~~~i~~~l~~~~~~~~~~~~~-----~~~~~-~~~~~~~~ 531 (640)
+++|+|++. .|+||.+.+.. ++++.||++||+++|++++|++ +++...++ ...+. .|.+++.+
T Consensus 3 ~~~l~v~~~---~~pP~~~~~~~~~~~~~~g~~~G~~~dl~~~ia~~lg~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~ 77 (263)
T 1mqi_A 3 NKTVVVTTI---LESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFK--YKLTIVGDGKYGARDADTKIWNGMVGE 77 (263)
T ss_dssp CCCEEEEEC---CBTTTBEECTTGGGCCGGGGEESHHHHHHHHHHHHHTCC--EEEEECTTCCCCCBCTTTCCBCHHHHH
T ss_pred CeEEEEEEe---cCCCcEEEecCcccccCCCceeeeHHHHHHHHHHHcCce--EEEEEccccccCccCCCCCCcHHHHHH
Confidence 578999996 47888887642 4899999999999999999999 45554321 11222 79999999
Q ss_pred HHcCcccEEEeeeeeeccccceEEeCccccccceEEEEecCC
Q 006567 532 ITTGVFDAVVGDITIVTNRTKIVDFSQPYAASGLVVVVPFRK 573 (640)
Q Consensus 532 l~~~~~D~~~~~~~~t~~R~~~vdfs~p~~~~~~~il~~~~~ 573 (640)
|.+|++|++++++++|++|.+.++||.||+..+.+++++++.
T Consensus 78 l~~g~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~ 119 (263)
T 1mqi_A 78 LVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGT 119 (263)
T ss_dssp HHTTSCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEETTC
T ss_pred HHcCCcCEEEEeeEecHHHHhhcccccceecccEEEEEcCcc
Confidence 999999999888999999999999999999999999999876
No 47
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=99.30 E-value=1.4e-12 Score=124.37 Aligned_cols=98 Identities=13% Similarity=0.321 Sum_probs=86.5
Q ss_pred CCeEEEEeecCCCccceEEeecCCcceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHhhHHHHHHcCcccEEEee
Q 006567 464 GKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGD 543 (640)
Q Consensus 464 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~~~~~ 543 (640)
.++|+|++. +.|+||.+.++ ++++.|+++||++++++++|++++|.. ..|.+++.+|.+|++|+++++
T Consensus 4 a~~l~v~~~--~~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~~---------~~~~~~~~~l~~g~~D~~~~~ 71 (232)
T 3i6v_A 4 ADTVRMGTE--GAYPPYNFIND-AGEVDGFERELGDELCKRAGLTCEWVK---------NDWDSIIPNLVSGNYDTIIAG 71 (232)
T ss_dssp --CEEEEEC--SEETTTEEECT-TSCEESHHHHHHHHHHHHHTCCEEEEE---------CCGGGHHHHHHTTSCSEECSS
T ss_pred CCEEEEEEC--CCCCCeeEECC-CCCEeeehHHHHHHHHHHcCCceEEEE---------CCHHHHHHHHHCCCCCEEEeC
Confidence 467999987 46899999865 789999999999999999999955544 349999999999999999899
Q ss_pred eeeeccccceEEeCccccccceEEEEecCC
Q 006567 544 ITIVTNRTKIVDFSQPYAASGLVVVVPFRK 573 (640)
Q Consensus 544 ~~~t~~R~~~vdfs~p~~~~~~~il~~~~~ 573 (640)
++.|++|++.++||.||+..+..+++++..
T Consensus 72 ~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~ 101 (232)
T 3i6v_A 72 MSITDERDEVIDFTQNYIPPTASSYVATSD 101 (232)
T ss_dssp CBCCHHHHTTSEEEEEEECCCEEEEEESST
T ss_pred CcCCHHHHhhcCcccccccCCeEEEEECCC
Confidence 999999999999999999999999998765
No 48
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=99.26 E-value=9.6e-12 Score=118.99 Aligned_cols=106 Identities=20% Similarity=0.259 Sum_probs=91.4
Q ss_pred CeEEEEeecCCCccceEEe-ecCCcceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHhhHHHHHHcCcccEEEee
Q 006567 465 KLLKIGVPNRASYREFVSK-VRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGD 543 (640)
Q Consensus 465 ~~l~v~~~~~~~~~p~~~~-~~~~~~~~G~~~dl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~~~~~ 543 (640)
++|+|++. +.|+||.+. ++ ++++.|+++|+++.+++++|+++++...+ |.+++.+|.+|++|+++++
T Consensus 3 ~~l~v~~~--~~~~P~~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~~~~---------~~~~~~~l~~g~~D~~~~~ 70 (237)
T 3kzg_A 3 LNLTIGTS--KFNPPFEVWSGN-NSSLYGFDIDLMQEICRRLHATCTFEAYI---------FDDLFPALKNREVDLVIAS 70 (237)
T ss_dssp CEEEEEEE--SEETTTEECCCT-TSCCBSHHHHHHHHHHHHTTCEEEEEEEC---------GGGHHHHHHTTSSSEECSS
T ss_pred ceEEEEEC--CCCCCeEEEeCC-CCCEeeehHHHHHHHHHHhCCceEEEEcC---------HHHHHHHHhCCCCCEEEEc
Confidence 57999998 358999998 54 88999999999999999999996665543 9999999999999999999
Q ss_pred eeeeccccceEEeCccccccceEEEEecCCCCcCcceecc
Q 006567 544 ITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLR 583 (640)
Q Consensus 544 ~~~t~~R~~~vdfs~p~~~~~~~il~~~~~~~~~~~~~l~ 583 (640)
++.|++|.+.++||.||+..+..+++++... ......|+
T Consensus 71 ~~~~~~r~~~~~fs~p~~~~~~~~~~~~~~~-~~~~~dL~ 109 (237)
T 3kzg_A 71 MIITDERKKHFIFSLPYMESNSQYITTVDSK-ISTFDDLH 109 (237)
T ss_dssp CBCCTTGGGTCEECCCSBCCEEEEEEETTCS-CCSGGGGT
T ss_pred cccChhHhccceeeeeeeecceEEEEECCCC-CCCHHHhC
Confidence 9999999999999999999999999998763 33344443
No 49
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=99.22 E-value=2.1e-11 Score=115.46 Aligned_cols=107 Identities=25% Similarity=0.374 Sum_probs=89.2
Q ss_pred CeEEEEeecCCCccceEEeecCCcceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHhhHHHHHHcCcccEEEeee
Q 006567 465 KLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDI 544 (640)
Q Consensus 465 ~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~~~~~~ 544 (640)
++|+|++. +.|+||.+.++ ++++.|+++|+++.+++++|+++++.. ..|.+++.++.+|++|++++++
T Consensus 2 ~~l~v~~~--~~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~~---------~~~~~~~~~l~~g~~D~~~~~~ 69 (227)
T 3tql_A 2 DTIKFATE--ATYPPYVYMGP-SGQVEGFGADIVKAVCKQMQAVCTISN---------QPWDSLIPSLKLGKFDALFGGM 69 (227)
T ss_dssp CEEEEEEC--SCBTTTBEEC---CCEESHHHHHHHHHHHHTTCEEEEEE---------CCHHHHHHHHHHTSCSEECSSC
T ss_pred ceEEEEEc--CCCCCeeEECC-CCCcccchHHHHHHHHHHhCCeEEEEe---------CCHHHHHHHHhCCCCCEEEecC
Confidence 57999996 36899998765 789999999999999999999955544 3499999999999999998899
Q ss_pred eeeccccceEEeCccccccceEEEEecCCCCcCcceecc
Q 006567 545 TIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLR 583 (640)
Q Consensus 545 ~~t~~R~~~vdfs~p~~~~~~~il~~~~~~~~~~~~~l~ 583 (640)
+.+++|.+.++||.|++..+..+++++..........|+
T Consensus 70 ~~~~~r~~~~~~s~p~~~~~~~l~~~~~~~~~~~~~dL~ 108 (227)
T 3tql_A 70 NITTARQKEVDFTDPYYTNSVSFIADKNTPLTLSKQGLK 108 (227)
T ss_dssp BCCTTGGGTEEECSCSBCCEEEEEEETTSCCCCSTTTTT
T ss_pred cCCHhHHhheecccceeccceEEEEeCCCCCCCCHHHhC
Confidence 999999999999999999999999998773323334443
No 50
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=99.21 E-value=2.5e-11 Score=117.06 Aligned_cols=110 Identities=25% Similarity=0.373 Sum_probs=92.9
Q ss_pred CCCeEEEEeecCCCccceEEeecCCcceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHhhHHHHHHcCcccEEEe
Q 006567 463 NGKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVG 542 (640)
Q Consensus 463 ~~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~~~~ 542 (640)
..++|+|++. +.|+||.+.. ++++.|+++|+++.+++++|+++++...+ |.+++.++.+|++|++++
T Consensus 22 ~~~~l~v~~~--~~~~P~~~~~--~g~~~G~~~dl~~~i~~~~g~~~~~~~~~---------~~~~~~~l~~g~~D~~~~ 88 (249)
T 4f3p_A 22 MAKELVVGTD--TSFMPFEFKQ--GDKYVGFDLDLWAEIAKGAGWTYKIQPMD---------FAGLIPALQTQNIDVALS 88 (249)
T ss_dssp --CCEEEEEE--SCBTTTBEEE--TTEEESHHHHHHHHHHHHHTCCEEEEEEC---------GGGHHHHHHTTSCSEEEE
T ss_pred cCceEEEEeC--CCCCCeEEec--CCeEEEEhHHHHHHHHHHcCCceEEEecC---------HHHHHHHHHCCCCCEEEe
Confidence 4578999997 4688998873 78999999999999999999996665543 999999999999999989
Q ss_pred eeeeeccccceEEeCccccccceEEEEecCCCCcCcceecccc
Q 006567 543 DITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPF 585 (640)
Q Consensus 543 ~~~~t~~R~~~vdfs~p~~~~~~~il~~~~~~~~~~~~~l~pf 585 (640)
+++.+++|.+.++||.|++..+.++++++.......+..|+..
T Consensus 89 ~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~~i~~~~dL~g~ 131 (249)
T 4f3p_A 89 GMTIKEERRKAIDFSDPYYDSGLAAMVQANNTTIKSIDDLNGK 131 (249)
T ss_dssp EEECCHHHHTTEEECSCCEEEEEEEEEETTCCSCCSSGGGTTS
T ss_pred ccccCHHHHcCcceecceeeccEEEEEECCCCCcCChHHhCCC
Confidence 9999999999999999999999999999877444445555443
No 51
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=99.21 E-value=9.9e-12 Score=118.99 Aligned_cols=98 Identities=19% Similarity=0.341 Sum_probs=87.7
Q ss_pred CCeEEEEeecCCCccceEEeecCCcceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHhhHHHHHHcCcccEEEee
Q 006567 464 GKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGD 543 (640)
Q Consensus 464 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~~~~~ 543 (640)
.++|+|++. +.|+||.+.++ ++++.|+++|+++++++++|++++|.. ..|.+++.+|.+|++|+++++
T Consensus 14 ~~~l~v~~~--~~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~~---------~~~~~~~~~l~~g~~D~~~~~ 81 (239)
T 3kbr_A 14 SGVLRVATT--GDYKPFSYRTE-EGGYAGFDVDMAQRLAESLGAKLVVVP---------TSWPNLMRDFADDRFDIAMSG 81 (239)
T ss_dssp HTEEEEEEC--SEETTTEEECT-TSCEESHHHHHHHHHHHHTTCEEEEEE---------CCTTTHHHHHHTTCCSEECSS
T ss_pred CCeEEEEEC--CCCCCeeEECC-CCCEEeehHHHHHHHHHHHCCceEEEE---------eCHHHHHHHHHCCCcCEEEeC
Confidence 468999996 46899999875 889999999999999999999955544 349999999999999999889
Q ss_pred eeeeccccceEEeCccccccceEEEEecCC
Q 006567 544 ITIVTNRTKIVDFSQPYAASGLVVVVPFRK 573 (640)
Q Consensus 544 ~~~t~~R~~~vdfs~p~~~~~~~il~~~~~ 573 (640)
++.|++|.+.++||.||+..+..+++++.+
T Consensus 82 ~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~ 111 (239)
T 3kbr_A 82 ISINLERQRQAYFSIPYLRDGKTPITLCSE 111 (239)
T ss_dssp CBCCHHHHTTCEECSCSEEECEEEEEEGGG
T ss_pred CcCCHHHcCccccchHHhccCcEEEEECCc
Confidence 999999999999999999999999998865
No 52
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=99.21 E-value=1.4e-11 Score=118.48 Aligned_cols=108 Identities=22% Similarity=0.362 Sum_probs=91.7
Q ss_pred CCeEEEEeecCCCccceEEeecCCcceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHhhHHHHHHcCcccEEEee
Q 006567 464 GKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGD 543 (640)
Q Consensus 464 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~~~~~ 543 (640)
.++|+|++. +.|+||.+.++ ++++.|+++|+++.+++++|+++++ .+ ..|.+++.+|.+|++|+++++
T Consensus 4 ~~~l~v~~~--~~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~--~~-------~~~~~~~~~l~~g~~D~~~~~ 71 (245)
T 3k4u_A 4 RGELRVGLE--PGYLPFEMKDK-KGNVIGFDVDLAREMAKAMGVKLKL--VP-------TSWDGLIPGLVTEKFDIIISG 71 (245)
T ss_dssp CSEEEEEEC--TTSTTTCEEET-TTEEESHHHHHHHHHHHHHTCEEEE--EE-------CCGGGHHHHHHTTSCSEECSS
T ss_pred CCeEEEEEC--CCcCCeeEECC-CCCCccchHHHHHHHHHHhCCeEEE--EE-------ccHHHHHHHHhCCCcCEEEec
Confidence 468999997 47899998875 8899999999999999999999554 44 349999999999999999889
Q ss_pred eeeeccccceEEeCccccccceEEEEecCC-CCcCcceecc
Q 006567 544 ITIVTNRTKIVDFSQPYAASGLVVVVPFRK-LNTGAWAFLR 583 (640)
Q Consensus 544 ~~~t~~R~~~vdfs~p~~~~~~~il~~~~~-~~~~~~~~l~ 583 (640)
++.|++|.+.++||.||+..+.++++++.. ........|+
T Consensus 72 ~~~t~~r~~~~~~s~p~~~~~~~~~~~~~~~~~i~~~~dL~ 112 (245)
T 3k4u_A 72 MTISQERNLRVNFVEPYIVVGQSLLVKKGLEKGVKSYKDLD 112 (245)
T ss_dssp CBCCHHHHTTSEECSCSEEECEEEEEETTTTTTCCSGGGGC
T ss_pred CcCCHHHHhhcCcchhhheeceEEEEECCcccccCCHHHhc
Confidence 999999999999999999999999999884 2333334443
No 53
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=99.19 E-value=3.3e-11 Score=117.04 Aligned_cols=110 Identities=18% Similarity=0.336 Sum_probs=92.8
Q ss_pred CCCeEEEEeecCCCccceEEeecCCcceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHhhHHHHHHcCcccEEEe
Q 006567 463 NGKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVG 542 (640)
Q Consensus 463 ~~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~~~~ 542 (640)
..++|+|++. +.|+||.+.++ ++++.|+++|+++.+++++|++++| .. ..|.+++.++.+|++|++++
T Consensus 27 ~~~~l~v~~~--~~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~--~~-------~~~~~~~~~l~~g~~D~~~~ 94 (259)
T 4dz1_A 27 EGRTLNVAVS--PASPPMLFKSA-DGKLQGIDLELFSSYCQSRHCKLNI--TE-------YAWDGMLGAVASGQADVAFS 94 (259)
T ss_dssp TTCEEEEEEC--CCBTTTBEECT-TCCEESHHHHHHHHHHHHHTCEEEE--EE-------CCHHHHHHHHHHTSSSEEEE
T ss_pred cCCeEEEEEC--CCCCCeEEECC-CCCEEEeHHHHHHHHHHHhCCeEEE--EE-------cCHHHHHHHHhCCCCCEEEE
Confidence 3478999996 46899988874 7899999999999999999999544 44 34999999999999999999
Q ss_pred eeeeeccccceEEeCccccccceEEEEecCCC-CcCcceeccc
Q 006567 543 DITIVTNRTKIVDFSQPYAASGLVVVVPFRKL-NTGAWAFLRP 584 (640)
Q Consensus 543 ~~~~t~~R~~~vdfs~p~~~~~~~il~~~~~~-~~~~~~~l~p 584 (640)
+++.|++|.+.++||.||+..+..++++++.. .......|+.
T Consensus 95 ~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~~~i~~~~dL~g 137 (259)
T 4dz1_A 95 GISITDKRKKVIDFSEPYYINSFYLVSMANHKITLNNLNELNK 137 (259)
T ss_dssp EEECCHHHHTTEEECCCSEEEEEEEEEETTSCCCCCSGGGGGG
T ss_pred CCcCCHHHhhccccccchhhCceEEEEEcCCCCCCCCHHHhCC
Confidence 99999999999999999999999999987652 4444454543
No 54
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=99.17 E-value=2.5e-11 Score=118.45 Aligned_cols=109 Identities=21% Similarity=0.322 Sum_probs=92.4
Q ss_pred CCeEEEEeecCCCccceEEeecCCcceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHhhHHHHHHcCcccEEEee
Q 006567 464 GKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGD 543 (640)
Q Consensus 464 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~~~~~ 543 (640)
.++|+|++. +.|+||.+.++ ++++.|+++||++.+++++|+++ ++.. ..|.+++.+|.+|++|+++++
T Consensus 20 ~~~l~v~~~--~~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~--~~~~-------~~~~~~~~~l~~g~~D~~~~~ 87 (268)
T 3hv1_A 20 EKKIKIGFD--ATFVPMGYEEK-DGSYIGFDIDLANAVFKLYGIDV--EWQA-------IDWDMKETELKNGTIDLIWNG 87 (268)
T ss_dssp HTEEEEEEC--TEETTTEEECT-TSCEECHHHHHHHHHHHTTTCEE--EEEE-------CCGGGHHHHHHHTSCSEECSS
T ss_pred CCcEEEEEC--CCCCCceEECC-CCCEEEehHHHHHHHHHHhCCcE--EEEE-------CCHHHHHHHHHCCCCCEEEec
Confidence 468999997 46899999875 78999999999999999999984 4444 349999999999999999889
Q ss_pred eeeeccccceEEeCccccccceEEEEecCCCCcCcceecccc
Q 006567 544 ITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPF 585 (640)
Q Consensus 544 ~~~t~~R~~~vdfs~p~~~~~~~il~~~~~~~~~~~~~l~pf 585 (640)
++.|++|.+.++||.||+..+..+++++.. .......|+..
T Consensus 88 ~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~-~i~~~~dL~g~ 128 (268)
T 3hv1_A 88 YSVTDERKQSADFTEPYMVNEQVLVTKKSS-GIDSVAGMAGK 128 (268)
T ss_dssp CBCCHHHHTTCEECCCCEEECEEEEEEGGG-CCCSSGGGTTC
T ss_pred CccCHHHHhcCcCcHHHeeCceEEEEECCC-CCCCHHHhCCC
Confidence 999999999999999999999999999876 33444444433
No 55
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=99.17 E-value=2.6e-11 Score=115.98 Aligned_cols=98 Identities=21% Similarity=0.365 Sum_probs=87.0
Q ss_pred CCeEEEEeecCCCccceEEeecCCcceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHhhHHHHHHcCcccEEEee
Q 006567 464 GKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGD 543 (640)
Q Consensus 464 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~~~~~ 543 (640)
.++|+|++. +.|+||.+.++ ++++.|+++|+++++++++|+++++. . ..|.+++.+|.+|++|+++++
T Consensus 3 ~~~l~v~~~--~~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~--~-------~~~~~~~~~l~~g~~D~~~~~ 70 (239)
T 1lst_A 3 PQTVRIGTD--TTYAPFSSKDA-KGEFIGFDIDLGNEMCKRMQVKCTWV--A-------SDFDALIPSLKAKKIDAIISS 70 (239)
T ss_dssp CSEEEEEEC--SCBTTTBEECT-TCCEESHHHHHHHHHHHHHTCEEEEE--E-------CCGGGHHHHHHTTSCSEECSS
T ss_pred cceEEEEEC--CCcCCeeEECC-CCCEeeEHHHHHHHHHHHHCCeEEEE--e-------CCHHHHHHHHhCCCCCEEEEC
Confidence 367999995 47899998765 78999999999999999999985544 4 349999999999999999888
Q ss_pred eeeeccccceEEeCccccccceEEEEecCC
Q 006567 544 ITIVTNRTKIVDFSQPYAASGLVVVVPFRK 573 (640)
Q Consensus 544 ~~~t~~R~~~vdfs~p~~~~~~~il~~~~~ 573 (640)
++.|++|.+.++||.|++..+..+++++..
T Consensus 71 ~~~t~~r~~~~~~s~p~~~~~~~l~~~~~~ 100 (239)
T 1lst_A 71 LSITDKRQQEIAFSDKLYAADSRLIAAKGS 100 (239)
T ss_dssp CBCCHHHHHHCEECSCSBCCCEEEEEETTC
T ss_pred cCcCHHHhhceeecccceeCceEEEEeCCC
Confidence 999999999999999999999999999876
No 56
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=99.16 E-value=8.6e-11 Score=114.61 Aligned_cols=108 Identities=18% Similarity=0.307 Sum_probs=90.9
Q ss_pred CCeEEEEeecCCCccceEEeecCCcceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHhhHHHHHHcCcccEEEee
Q 006567 464 GKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGD 543 (640)
Q Consensus 464 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~~~~~ 543 (640)
.++|+|++. +.|+||.+.++ ++++.|+++|+++.+++++|++ +++.+. .+|.+++.+|.+|++|++ ++
T Consensus 31 ~~~l~v~~~--~~~~P~~~~~~-~g~~~G~~~dl~~~i~~~lg~~--~~~~~~------~~~~~~~~~l~~G~~D~~-~~ 98 (267)
T 3mpk_A 31 HPVVKVAVL--NLFAPFTLFRT-DEQFGGISAAVLQLLQLRTGLD--FEIIGV------DTVEELIAKLRSGEADMA-GA 98 (267)
T ss_dssp CSEEEEEEE--TEETTTEECCT-TCCCBSHHHHHHHHHHHHHCCE--EEEEEE------SSHHHHHHHHHHTSCSEE-EE
T ss_pred CCcEEEEeC--CCCCCeEEECC-CCcEeeeHHHHHHHHHHHHCCe--EEEEec------CCHHHHHHHHHCCCccEE-ec
Confidence 478999996 46899999865 7899999999999999999999 455542 469999999999999997 48
Q ss_pred eeeeccccceEEeCccccccceEEEEecCCCCcCcceecc
Q 006567 544 ITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLR 583 (640)
Q Consensus 544 ~~~t~~R~~~vdfs~p~~~~~~~il~~~~~~~~~~~~~l~ 583 (640)
++.+++|.+.++||.||+..+.++++++..........|+
T Consensus 99 ~~~t~~r~~~~~fs~p~~~~~~~l~~~~~~~~i~~~~dL~ 138 (267)
T 3mpk_A 99 LFVNSARESFLSFSRPYVRNGMVIVTRQDPDAPVDADHLD 138 (267)
T ss_dssp EECCGGGTTTEEECSCSEEECEEEEEESSTTSCSSGGGCT
T ss_pred ccCChhhhcceEechhhccCceEEEEECCCCCCCCHHHHC
Confidence 9999999999999999999999999998753344334343
No 57
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis}
Probab=99.16 E-value=2.3e-11 Score=119.05 Aligned_cols=110 Identities=18% Similarity=0.258 Sum_probs=92.3
Q ss_pred CCeEEEEeecCCCccceEEeecCC---cceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHhhHHHHHHcCcccEE
Q 006567 464 GKLLKIGVPNRASYREFVSKVRGS---DMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAV 540 (640)
Q Consensus 464 ~~~l~v~~~~~~~~~p~~~~~~~~---~~~~G~~~dl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~~ 540 (640)
.++|+|++. +.|+||.+.++ + +++.|+++|+++++++++|+++++... .|.+++.+|.+|++|++
T Consensus 20 ~~~l~v~~~--~~~pP~~~~~~-~~~~g~~~G~~~dl~~~i~~~~g~~v~~~~~---------~~~~~~~~l~~G~~D~~ 87 (271)
T 2iee_A 20 KGKIVVATS--GTLYPTSYHDT-DSGSDKLTGYEVEVVREAAKRLGLKVEFKEM---------GIDGMLTAVNSGQVDAA 87 (271)
T ss_dssp HTEEEEEEC--SCBTTTBEEET-TTTCCEEECHHHHHHHHHHHHTTCEEEEEEC---------CSTTHHHHHHHTSSSEE
T ss_pred CCeEEEEEC--CCCCCeeEeCC-CCCCCCceeeHHHHHHHHHHHcCCeEEEEEC---------CHHHHHHHHHCCCcCEE
Confidence 468999986 47899998865 4 899999999999999999999555443 49999999999999999
Q ss_pred EeeeeeeccccceEEeCccccccceEEEEecCCC-CcCcceecccc
Q 006567 541 VGDITIVTNRTKIVDFSQPYAASGLVVVVPFRKL-NTGAWAFLRPF 585 (640)
Q Consensus 541 ~~~~~~t~~R~~~vdfs~p~~~~~~~il~~~~~~-~~~~~~~l~pf 585 (640)
+++++.|++|.+.++||.||+..+..+++++... .......|+..
T Consensus 88 ~~~~~~t~~r~~~~~fs~p~~~~~~~l~~~~~~~~~i~~~~dL~g~ 133 (271)
T 2iee_A 88 ANDIDVTKDREEKFAFSTPYKYSYGTAIVRKDDLSGIKTLKDLKGK 133 (271)
T ss_dssp CSSCBCCHHHHTTEEECCCSEEEEEEEEECTTTGGGCSSGGGGTTC
T ss_pred EeCCcCChhhccceEEeecceeCCeEEEEECCCCCCCCCHHHhCCC
Confidence 8889999999999999999999999999988762 34444555443
No 58
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=99.14 E-value=9.7e-11 Score=111.47 Aligned_cols=110 Identities=13% Similarity=0.253 Sum_probs=93.5
Q ss_pred CCeEEEEeecCCCccceEEeecCCcceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHhhHHHHHHcCcccEEEee
Q 006567 464 GKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGD 543 (640)
Q Consensus 464 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~~~~~ 543 (640)
.++|+|++. +.|+||.+.++ ++++.|+.+|+++.+++++|+++++... .|.+++.++.+|++|++ ++
T Consensus 10 ~~~l~v~~~--~~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~~~---------~~~~~~~~l~~g~~D~~-~~ 76 (234)
T 3h7m_A 10 HRTIVVGGD--RDYPPYEFIDQ-NGKPAGYNVELTRAIAEVMGMTVEFRLG---------AWSEMFSALKSGRVDVL-QG 76 (234)
T ss_dssp SSCEEEEEE--TEETTTEEECT-TSCEESHHHHHHHHHHHHHTCCEEEEEE---------CGGGHHHHHHTTSSSEE-EE
T ss_pred CCEEEEEec--CCCCCeEEECC-CCCEeeeEHHHHHHHHHHcCCceEEEeC---------CHHHHHHHHhCCCeeEE-Ee
Confidence 468999995 46899999865 7899999999999999999999666543 39999999999999995 78
Q ss_pred eeeeccccceEEeCccccccceEEEEecCCCCcCcceeccccc
Q 006567 544 ITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPFS 586 (640)
Q Consensus 544 ~~~t~~R~~~vdfs~p~~~~~~~il~~~~~~~~~~~~~l~pf~ 586 (640)
++.+++|.+.++||.|++..+..+++++.......+..|+...
T Consensus 77 ~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~~~~~~~dL~g~~ 119 (234)
T 3h7m_A 77 ISWSEKRARQIDFTPPHTIVYHAIFARRDSPPAAGLEDLRGRK 119 (234)
T ss_dssp EECCHHHHTTEEEEEEEEEEEEEEEEESSSCCCSSGGGGTTSC
T ss_pred ccCCHhHHhhcCCCccccccceEEEEECCCCCCCCHHHhCCCE
Confidence 9999999999999999999999999998875345555555443
No 59
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=99.13 E-value=7.7e-11 Score=112.12 Aligned_cols=109 Identities=24% Similarity=0.406 Sum_probs=87.9
Q ss_pred CCeEEEEeecCCCccceEEe--ecCCcceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHhhHHHHHHcCcccEEE
Q 006567 464 GKLLKIGVPNRASYREFVSK--VRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVV 541 (640)
Q Consensus 464 ~~~l~v~~~~~~~~~p~~~~--~~~~~~~~G~~~dl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~~~ 541 (640)
.++|+|++. +|+||.+. ++ ++++.|+++|+++.+++++|++ +++... +.|.+++.+|.+|++|+++
T Consensus 3 ~~~l~v~~~---~~~P~~~~~~~~-~g~~~G~~~dl~~~i~~~~g~~--~~~~~~------~~~~~~~~~l~~g~~D~~~ 70 (233)
T 1ii5_A 3 AMALKVGVV---GNPPFVFYGEGK-NAAFTGISLDVWRAVAESQKWN--SEYVRQ------NSISAGITAVAEGELDILI 70 (233)
T ss_dssp SCCEEEEEC---CCTTTCEEC------CEESHHHHHHHHHHHHHTCC--EEEEEC------SCHHHHHHHHHTTSCSEEE
T ss_pred CceEEEEec---CCCCeEEEecCC-CCCEEEEeHHHHHHHHHHcCCc--EEEEEe------CCHHHHHHHHHCCCcCEEE
Confidence 367999996 37889887 43 7899999999999999999999 455442 2699999999999999999
Q ss_pred eeeeeecccc--ceEEeCccccccceEEEEecCCC-CcCcceeccc
Q 006567 542 GDITIVTNRT--KIVDFSQPYAASGLVVVVPFRKL-NTGAWAFLRP 584 (640)
Q Consensus 542 ~~~~~t~~R~--~~vdfs~p~~~~~~~il~~~~~~-~~~~~~~l~p 584 (640)
++++.+++|. +.++||.|++..+..+++++... ....+..|+.
T Consensus 71 ~~~~~~~~r~~~~~~~~s~p~~~~~~~~~~~~~~~~~i~~~~dL~g 116 (233)
T 1ii5_A 71 GPISVTPERAAIEGITFTQPYFSSGIGLLIPGTATPLFRSVGDLKN 116 (233)
T ss_dssp EEEECCHHHHTSTTEEECCCCEEEEEEEEEEGGGTTTCSSGGGGTT
T ss_pred eeeecCccccccceeEEccceeecCeEEEEECCCCCCCCCHHHhCC
Confidence 8899999999 99999999999999999988762 3333444443
No 60
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=99.13 E-value=5e-11 Score=114.50 Aligned_cols=109 Identities=16% Similarity=0.244 Sum_probs=90.9
Q ss_pred CCeEEEEeecCCCccceEEeecCCcceeeeeHHHHHHHHHhCC-CCccEEEEEcCCCCCCCCHhhHHHHHHcCcccEEEe
Q 006567 464 GKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLP-YAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVG 542 (640)
Q Consensus 464 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~~~~ 542 (640)
.++|+|++. ..|+||.+. + ++++.|+++||++.+++++| ++++| .+ ..|.+++.+|.+|++|++++
T Consensus 7 ~~~l~v~~~--~~~~P~~~~-~-~g~~~G~~~dl~~~i~~~~g~~~~~~--~~-------~~~~~~~~~l~~g~~D~~~~ 73 (246)
T 4eq9_A 7 KKEIIVATN--GSPRPFIYE-E-NGELTGYEIEVVRAIFKDSDKYDVKF--EK-------TEWSGVFAGLDADRYNMAVN 73 (246)
T ss_dssp CEEEEEEEC--CCSTTTSEE-E-TTEEESHHHHHHHHHHTTCSSEEEEE--EE-------CCHHHHHHHHHTTSCSEECS
T ss_pred CCEEEEEeC--CCcCCeEEc-C-CCCCcccHHHHHHHHHHHcCCceEEE--Ee-------CCHHHHHHHHhCCCcCEEec
Confidence 467999997 368899884 3 78999999999999999999 88544 44 34999999999999999988
Q ss_pred eeeeeccccceEEeCccccccceEEEEecCCCCcCcceecccc
Q 006567 543 DITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRPF 585 (640)
Q Consensus 543 ~~~~t~~R~~~vdfs~p~~~~~~~il~~~~~~~~~~~~~l~pf 585 (640)
+++.+++|.+.++||.|++..+..+++++.......+..|+..
T Consensus 74 ~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~~i~~~~dL~g~ 116 (246)
T 4eq9_A 74 NLSYTKERAEKYLYAAPIAQNPNVLVVKKDDSSIKSLDDIGGK 116 (246)
T ss_dssp SCCCCHHHHHHEEECCCCEECCEEEEEETTCCSCSSGGGCTTC
T ss_pred ccccChhhhhceeeccceecCceEEEEECCCCCCCCHHHhCCC
Confidence 9999999999999999999999999999844344444555433
No 61
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=99.12 E-value=1.1e-10 Score=110.44 Aligned_cols=107 Identities=25% Similarity=0.395 Sum_probs=89.6
Q ss_pred CeEEEEeecCCCccceEEeecCCcceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHhhHHHHHHcCcccEEEeee
Q 006567 465 KLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDI 544 (640)
Q Consensus 465 ~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~~~~~~ 544 (640)
++|+|++. +.|+||.+.+ ++++.|+++|+++.+++++|+++++... .|.+++.++.+|++|++++++
T Consensus 3 ~~l~v~~~--~~~~P~~~~~--~g~~~G~~~dl~~~~~~~~g~~~~~~~~---------~~~~~~~~l~~g~~D~~~~~~ 69 (226)
T 1wdn_A 3 KKLVVATD--TAFVPFEFKQ--GDLYVGFDVDLWAAIAKELKLDYELKPM---------DFSGIIPALQTKNVDLALAGI 69 (226)
T ss_dssp -CEEEEEE--SSBTTTBEEE--TTEEESHHHHHHHHHHHHHTCCEEEEEE---------CGGGHHHHHHTTSSSEEEEEE
T ss_pred ceEEEEEC--CCCCCeeEec--CCcEEEeeHHHHHHHHHHhCCEEEEEEC---------CHHHHHHHHhCCCCCEEEEcC
Confidence 46999997 4789998887 4899999999999999999999655543 399999999999999999899
Q ss_pred eeeccccceEEeCccccccceEEEEecCCCCcCcceeccc
Q 006567 545 TIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRP 584 (640)
Q Consensus 545 ~~t~~R~~~vdfs~p~~~~~~~il~~~~~~~~~~~~~l~p 584 (640)
+.+++|.+.++|+.|++..+..+++++.......+..|+.
T Consensus 70 ~~~~~r~~~~~~~~p~~~~~~~~~~~~~~~~i~~~~dL~g 109 (226)
T 1wdn_A 70 TITDERKKAIDFSDGYYKSGLLVMVKANNNDVKSVKDLDG 109 (226)
T ss_dssp ECCHHHHTTSEECSCCEEEEEEEEEETTCCSCSSSTTTTT
T ss_pred cCCHHHhCccccccchhcCceEEEEeCCCCCCCCHHHhCC
Confidence 9999999999999999999999999887633333444443
No 62
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=99.11 E-value=8.8e-11 Score=112.55 Aligned_cols=108 Identities=21% Similarity=0.233 Sum_probs=90.8
Q ss_pred CCeEEEEeecCCCccceEEeecCCcceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHhhHHHHHHcCcccEEEee
Q 006567 464 GKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGD 543 (640)
Q Consensus 464 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~~~~~ 543 (640)
.++|+|++. +.|+||.+.++ ++++.|+++|+++.+++++|++++| .+ ..|.+++..|.+|++|+++++
T Consensus 10 ~~~l~v~~~--~~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~--~~-------~~~~~~~~~l~~g~~D~~~~~ 77 (242)
T 3del_B 10 SEKFIVGTN--ATYPPFEFVDK-RGEVVGFDIDLAREISNKLGKTLDV--RE-------FSFDALILNLKQHRIDAVITG 77 (242)
T ss_dssp -CEEEEEEC--SCBTTTBEECT-TSCEESHHHHHHHHHHHHHTCEEEE--EE-------CCGGGHHHHHHTTSSSEECSS
T ss_pred CCcEEEEeC--CCCCCeeEECC-CCCEEEeeHHHHHHHHHHcCCceEE--EE-------cCHHHHHHHHhCCCcCEEEec
Confidence 468999995 47899998865 8899999999999999999998544 44 349999999999999999889
Q ss_pred eeeeccccceEEeCcccc--ccceEEEEecCCCCcCcceecccc
Q 006567 544 ITIVTNRTKIVDFSQPYA--ASGLVVVVPFRKLNTGAWAFLRPF 585 (640)
Q Consensus 544 ~~~t~~R~~~vdfs~p~~--~~~~~il~~~~~~~~~~~~~l~pf 585 (640)
++.+++|.+.++| .||+ ..+..+++++.. ....+..|+..
T Consensus 78 ~~~~~~r~~~~~~-~p~~~~~~~~~~~~~~~~-~i~~~~dL~g~ 119 (242)
T 3del_B 78 MSITPSRLKEILM-IPYYGEEIKHLVLVFKGE-NKHPLPLTQYR 119 (242)
T ss_dssp BBCCHHHHTTEEE-EEEEEEEESEEEEEEESC-CSCCCCGGGSS
T ss_pred CcCCHHHHhcccc-eeeeecCCceEEEEeCCC-CCCCHHHhCCC
Confidence 9999999999999 9999 899999998873 44444555543
No 63
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=99.10 E-value=1.1e-10 Score=110.65 Aligned_cols=98 Identities=28% Similarity=0.420 Sum_probs=86.7
Q ss_pred CCeEEEEeecCCCccceEEeecCCcceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHhhHHHHHHcCcccEEEee
Q 006567 464 GKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGD 543 (640)
Q Consensus 464 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~~~~~ 543 (640)
.++|+|++. +.|+||.+.++ ++++.|+.+|+++.+++++|+++++.. ..|.+++..+.+|++|+++++
T Consensus 5 a~~l~v~~~--~~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~~---------~~~~~~~~~l~~g~~D~~~~~ 72 (229)
T 2y7i_A 5 ARTLHFGTS--ATYAPYEFVDA-DNKIVGFDIDVANAVCKEMQAECSFTN---------QSFDSLIPSLRFKKFDAVIAG 72 (229)
T ss_dssp CCEEEEEEC--CCBTTTBEECT-TSCEESHHHHHHHHHHHHTTCEEEEEE---------CCGGGHHHHHHTTSCSEECSS
T ss_pred CCcEEEEeC--CCcCCceEECC-CCCCcceeHHHHHHHHHHhCCeEEEEE---------cCHHHHHHHHhCCCceEEEec
Confidence 468999996 47899988764 789999999999999999999955444 349999999999999999888
Q ss_pred eeeeccccceEEeCcccccc-ceEEEEecCC
Q 006567 544 ITIVTNRTKIVDFSQPYAAS-GLVVVVPFRK 573 (640)
Q Consensus 544 ~~~t~~R~~~vdfs~p~~~~-~~~il~~~~~ 573 (640)
++.+++|.+.++||.|++.. +..+++++..
T Consensus 73 ~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~ 103 (229)
T 2y7i_A 73 MDMTPKREQQVSFSQPYYEGLSAVVVTRKGA 103 (229)
T ss_dssp CBCCHHHHTTSEECSCSBCCCCEEEEEETTS
T ss_pred CccCHHHhcceeeccccccCCcEEEEEeCCC
Confidence 99999999999999999999 9999999875
No 64
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=99.08 E-value=1.2e-10 Score=112.67 Aligned_cols=97 Identities=18% Similarity=0.239 Sum_probs=86.6
Q ss_pred CCeEEEEeecCCCccceEEeecCCcceeeeeHHHHHHHHHhCCCC-ccEEEEEcCCCCCCCCHhhHHHHHHcCcccEEEe
Q 006567 464 GKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYA-VPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVG 542 (640)
Q Consensus 464 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~~~~ 542 (640)
.++|+|++. .|+||.+.++ ++++.|+++|+++.+++++|++ ++|... .|.+++.++.+|++|++++
T Consensus 12 ~~~l~v~~~---~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~~~~---------~~~~~~~~l~~g~~D~~~~ 78 (257)
T 2q88_A 12 QGFARIAIA---NEPPFTAVGA-DGKVSGAAPDVAREIFKRLGVADVVASIS---------EYGAMIPGLQAGRHDAITA 78 (257)
T ss_dssp HTEEEEEEC---CCTTTCEECT-TCCEESHHHHHHHHHHHHTTCCEEEEEEC---------CGGGHHHHHHTTSCSEECS
T ss_pred CCeEEEEcC---CCCCeeEECC-CCCcccccHHHHHHHHHHcCCCeeeEEeC---------CHHHHHHHHHCCCcCEEEe
Confidence 467999985 5789988765 7899999999999999999997 666553 3999999999999999988
Q ss_pred eeeeeccccceEEeCccccccceEEEEecCC
Q 006567 543 DITIVTNRTKIVDFSQPYAASGLVVVVPFRK 573 (640)
Q Consensus 543 ~~~~t~~R~~~vdfs~p~~~~~~~il~~~~~ 573 (640)
+++.|++|.+.++||.||+..+..+++++..
T Consensus 79 ~~~~t~~r~~~~~~s~p~~~~~~~~~~~~~~ 109 (257)
T 2q88_A 79 GLFMKPERCAAVAYSQPILCDAEAFALKKGN 109 (257)
T ss_dssp CCBCCHHHHTTSEECSCCCEECEEEEEETTC
T ss_pred cccCCHHHHhccccccchhcCceEEEEECCC
Confidence 8999999999999999999999999999876
No 65
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=98.96 E-value=9.2e-10 Score=107.56 Aligned_cols=108 Identities=21% Similarity=0.289 Sum_probs=90.1
Q ss_pred CCCeEEEEeecCCCccceEEeecCCcceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHhhHHHHHHcCcccEEEe
Q 006567 463 NGKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVG 542 (640)
Q Consensus 463 ~~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~~~~ 542 (640)
+.++|+|++. +.|+||.+.+ ++++.|+.+|+++.+++++|+++ ++.. ..|.+++.+|.+|++|++++
T Consensus 40 ~~~~l~v~~~--~~~~P~~~~~--~g~~~G~~~dl~~~i~~~~g~~v--~~~~-------~~~~~~~~~l~~G~~D~~~~ 106 (272)
T 2pvu_A 40 TKKKVVVGTD--AAFAPFEYMQ--KGKIVGFDVDLLDAVMKAAGLDY--ELKN-------IGWDPLFASLQSKEVDMGIS 106 (272)
T ss_dssp CCCCEEEEEC--CCBTTTBEEE--TTEEESHHHHHHHHHHHHHTCCE--EEEE-------CCHHHHHHHHHHTSSSEECS
T ss_pred cCCeEEEEEC--CCCCCeEEec--CCeEEEEHHHHHHHHHHHhCCce--EEEE-------CCHHHHHHHHhCCCCCEEEe
Confidence 3467999996 4688998874 68999999999999999999994 4444 33999999999999999988
Q ss_pred eeeeeccccceEEeCccccccceEEEEecCCCCcCcceeccc
Q 006567 543 DITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRP 584 (640)
Q Consensus 543 ~~~~t~~R~~~vdfs~p~~~~~~~il~~~~~~~~~~~~~l~p 584 (640)
+++.+++|.+.++|+.|++..+..+++++... ...+..|+.
T Consensus 107 ~~~~~~~r~~~~~~s~p~~~~~~~l~~~~~~~-i~~~~dL~g 147 (272)
T 2pvu_A 107 GITITDERKQSYDFSDPYFEATQVILVKQGSP-VKNALDLKG 147 (272)
T ss_dssp SCBCCHHHHTTEEECSCCEEECEEEEEETTCC-CCSGGGGTT
T ss_pred CCcCCHHHHhcCccchhhhccceEEEEECCCC-CCCHHHhCC
Confidence 89999999999999999999999999998763 333344443
No 66
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=98.95 E-value=7.4e-10 Score=104.77 Aligned_cols=96 Identities=23% Similarity=0.390 Sum_probs=79.8
Q ss_pred CeEEEEeecCCCccceEEeecCCcceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHhhHHHHHHcCcccEEEeee
Q 006567 465 KLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDI 544 (640)
Q Consensus 465 ~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~~~~~~ 544 (640)
++|+|++. +++||.+. + ++++.|+++|+++.+++++|+++ ++... +.|.+++.+|.+|++|++++++
T Consensus 3 ~~l~v~~~---~~~P~~~~-~-~g~~~G~~~dl~~~~~~~~g~~~--~~~~~------~~~~~~~~~l~~g~~D~~~~~~ 69 (228)
T 2pyy_A 3 QPLLVATR---VIPPFVLS-N-KGELSGFSIDLWRSIATQIGIES--KLIEY------SSVPELISAIKDNKVNLGIAAI 69 (228)
T ss_dssp -CEEEEEC---CBTTTBBC-C----CBSHHHHHHHHHHHHHTCCE--EEEEC------SSHHHHHHHHHTTSCSEECSSC
T ss_pred ceEEEEec---CCCCeEEe-c-CCceEEEeHHHHHHHHHHhCCcE--EEEEc------CCHHHHHHHHHCCCcCEEEecc
Confidence 57999986 47888877 3 78899999999999999999984 44442 3599999999999999998889
Q ss_pred eeeccccceEEeCccccccceEEEEecCC
Q 006567 545 TIVTNRTKIVDFSQPYAASGLVVVVPFRK 573 (640)
Q Consensus 545 ~~t~~R~~~vdfs~p~~~~~~~il~~~~~ 573 (640)
+.+++|.+.+.|+.|++..+..+++++..
T Consensus 70 ~~~~~r~~~~~~~~p~~~~~~~~~~~~~~ 98 (228)
T 2pyy_A 70 SITAEREQNFDFSLPIFASGLQIMVRNLE 98 (228)
T ss_dssp BCCHHHHHHSEECSCSEEEEEEEEEEC--
T ss_pred ccCHHHHccceecccchhcceEEEEECCc
Confidence 99999999999999999999999998764
No 67
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=98.88 E-value=2.6e-09 Score=105.20 Aligned_cols=108 Identities=19% Similarity=0.209 Sum_probs=89.0
Q ss_pred CCeEEEEeecCCCccceEEeecCCcceeeeeHHHHHHHHHh----CC---CCccEEEEEcCCCCCCCCHhhHHHHHHcCc
Q 006567 464 GKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNL----LP---YAVPYQFVAFGDGHKNPSYTQLVDSITTGV 536 (640)
Q Consensus 464 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~----l~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 536 (640)
.++|+|++. ..|+||.+.++ ++++.|+++|+++.+++. +| ++ +++.+ ..|.+++..+.+|+
T Consensus 16 ~~~l~v~~~--~~~~P~~~~~~-~g~~~G~~~dl~~~ia~~l~~~~G~~~~~--v~~~~-------~~~~~~~~~l~~g~ 83 (287)
T 2vha_A 16 NGVIVVGHR--ESSVPFSYYDN-QQKVVGYSQDYSNAIVEAVKKKLNKPDLQ--VKLIP-------ITSQNRIPLLQNGT 83 (287)
T ss_dssp HTEEEEEEC--SEETTTEEECS-SSCEESHHHHHHHHHHHHHHHHTTCTTCE--EEEEE-------CCTTTHHHHHHTTS
T ss_pred CCeEEEEEc--CCCCCceEECC-CCCcccccHHHHHHHHHHHHHhcCCCCce--EEEEE-------CCHHHHHHHHHCCC
Confidence 467999996 36899998865 789999999999999975 67 66 55555 34999999999999
Q ss_pred ccEEEeeeeeeccccceEEeCccccccceEEEEecCCCCcCcceeccc
Q 006567 537 FDAVVGDITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRP 584 (640)
Q Consensus 537 ~D~~~~~~~~t~~R~~~vdfs~p~~~~~~~il~~~~~~~~~~~~~l~p 584 (640)
+|+++++++.+++|.+.++||.||+..+..+++++.. ....+..|+.
T Consensus 84 ~D~~~~~~~~t~~r~~~~~~s~p~~~~~~~l~~~~~~-~i~sl~dL~g 130 (287)
T 2vha_A 84 FDFECGSTTNNVERQKQAAFSDTIFVVGTRLLTKKGG-DIKDFADLKG 130 (287)
T ss_dssp CSEECSSCBCCHHHHTTCEEEEEEEEEEEEEEEETTS-SCCSGGGGTT
T ss_pred eeEEeccccCCcchhhcccccceeeecceEEEEECCC-CCCCHHHcCC
Confidence 9999888999999999999999999999999999876 2333444443
No 68
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=98.87 E-value=2e-09 Score=104.73 Aligned_cols=108 Identities=19% Similarity=0.265 Sum_probs=90.2
Q ss_pred CCeEEEEeecCCCccceEE---eecCCcceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHhhHHHHHHcCcccEE
Q 006567 464 GKLLKIGVPNRASYREFVS---KVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAV 540 (640)
Q Consensus 464 ~~~l~v~~~~~~~~~p~~~---~~~~~~~~~G~~~dl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~~ 540 (640)
.++|+|++. +.|+||.+ .+ +++++.|+.+|+++.+++++|+++++. . ..|.+++..+.+|++|++
T Consensus 38 ~~~l~v~~~--~~~~P~~~~~~~~-~~g~~~G~~~dl~~~~~~~~g~~~~~~--~-------~~~~~~~~~l~~g~~D~~ 105 (269)
T 4i62_A 38 KGKLVVALN--PDFAPFEYQKVVD-GKNQIVGSDIELAKAIATELGVELELS--P-------MSFDNVLASVQSGKADLA 105 (269)
T ss_dssp HTEEEEEEC--SCBTTTBEEEEET-TEEEEESHHHHHHHHHHHHHTCEEEEE--E-------CCHHHHHHHHHTTSCSEE
T ss_pred CCeEEEEec--CCCCCceeecccC-CCCcEeeecHHHHHHHHHHHCCceEEE--E-------cCHHHHHHHHhCCCccEE
Confidence 357999987 46889888 44 378999999999999999999985554 4 349999999999999999
Q ss_pred EeeeeeeccccceEEeCccccccceEEEEecCC-CCcCcceecc
Q 006567 541 VGDITIVTNRTKIVDFSQPYAASGLVVVVPFRK-LNTGAWAFLR 583 (640)
Q Consensus 541 ~~~~~~t~~R~~~vdfs~p~~~~~~~il~~~~~-~~~~~~~~l~ 583 (640)
+++++.+++|.+.+.||.|++..+..+++++.. .....+..|+
T Consensus 106 ~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~~~i~~~~dL~ 149 (269)
T 4i62_A 106 ISGVSKTDERSKVFDFSTPYYTAKNKLIVKKSDLATYQSVNDLA 149 (269)
T ss_dssp CSSCBCCHHHHTTEEECSCCEECCEEEEEEGGGTTTCSSGGGGC
T ss_pred ecCCcCCHhHhhceecccchhhcceEEEEECCccccccCHHHhC
Confidence 889999999999999999999999999998874 2334444444
No 69
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=98.86 E-value=2.2e-09 Score=104.35 Aligned_cols=109 Identities=21% Similarity=0.285 Sum_probs=90.7
Q ss_pred CCeEEEEeecCCCccceEEeecCCcceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHhhHHHHHHcCcccEEEee
Q 006567 464 GKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGD 543 (640)
Q Consensus 464 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~~~~~ 543 (640)
.++|+|++. +.|+||.+.++ ++++.|+.+|+++.+++++|+++++ .. ..|.+++..+.+|++|+++++
T Consensus 30 ~~~l~v~~~--~~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~--~~-------~~~~~~~~~l~~g~~D~~~~~ 97 (268)
T 3qax_A 30 NRIWIVGTN--ATYPPFEYVDA-QGEVVGFDIDLAKAISEKLGKQLEV--RE-------FAFDALILNLKKHRIDAILAG 97 (268)
T ss_dssp -CEEEEEEC--SCBTTTBEECT-TSCEESHHHHHHHHHHHHHTCEEEE--EE-------CCGGGHHHHHHHTSSSEECSC
T ss_pred CCeEEEEEC--CCCCCceEECC-CCCEEEEEHHHHHHHHHHhCCeEEE--Ee-------cCHHHHHHHHhCCCccEEeec
Confidence 467999986 46789988765 8899999999999999999998544 44 349999999999999999889
Q ss_pred eeeeccccceEEeCcccc--ccceEEEEecCCCCcCcceecccc
Q 006567 544 ITIVTNRTKIVDFSQPYA--ASGLVVVVPFRKLNTGAWAFLRPF 585 (640)
Q Consensus 544 ~~~t~~R~~~vdfs~p~~--~~~~~il~~~~~~~~~~~~~l~pf 585 (640)
++.+++|.+.++| .|++ ..+..+++++..........|+..
T Consensus 98 ~~~~~~r~~~~~~-~p~~~~~~~~~~~~~~~~~~i~~~~dL~g~ 140 (268)
T 3qax_A 98 MSITPSRQKEIAL-LPYYGDEVQELMVVSKRSLETPVLPLTQYS 140 (268)
T ss_dssp CBCCHHHHTTSEE-EEEECCCBCEEEEEEETTSCSCCCCGGGSS
T ss_pred CccCHhHhcceee-ecceecccceEEEEECCCCCCCCHHHhCCC
Confidence 9999999999999 9999 899999999874344445555443
No 70
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=98.86 E-value=2.1e-09 Score=105.74 Aligned_cols=98 Identities=21% Similarity=0.398 Sum_probs=86.3
Q ss_pred CCeEEEEeecCCCccceEEeecCCcceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHhhHHHHHHcCcccEEEee
Q 006567 464 GKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGD 543 (640)
Q Consensus 464 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~~~~~ 543 (640)
.++|+|++. +.|+||.+.++ ++++.|+.+|+++.+++++|++ +++... .|.+++..|.+|++|++++.
T Consensus 56 ~~~l~v~~~--~~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~G~~--v~~~~~-------~~~~~~~~l~~G~~D~~~~~ 123 (283)
T 2yln_A 56 KGTVTVGTE--GTYAPFTYHDK-DGKLTGYDVEVTRAVAEKLGVK--VEFKET-------QWDSMMAGLKAGRFDVVANQ 123 (283)
T ss_dssp TCEEEEEEC--SEETTTEEECT-TSCEESHHHHHHHHHHHHHTCE--EEEEEC-------CGGGHHHHHHHTSCSEECSS
T ss_pred CCeEEEEEC--CCCCCeeEECC-CCCEeeehHHHHHHHHHHcCCc--eEEEEC-------CHHHHHHHHHCCCcCEEEec
Confidence 467999996 35899998864 7899999999999999999998 555552 39999999999999999888
Q ss_pred eee-eccccceEEeCccccccceEEEEecCC
Q 006567 544 ITI-VTNRTKIVDFSQPYAASGLVVVVPFRK 573 (640)
Q Consensus 544 ~~~-t~~R~~~vdfs~p~~~~~~~il~~~~~ 573 (640)
+++ +.+|.+.++|+.||+..+..+++++..
T Consensus 124 ~~~~t~~r~~~~~~~~p~~~~~~~l~~~~~~ 154 (283)
T 2yln_A 124 VGLTSPERQATFDKSEPYSWSGAVLVAHNDS 154 (283)
T ss_dssp CCCCSHHHHHHEEECSCSEEECEEEEEETTC
T ss_pred CccCChhhhcceEeccCeeeecEEEEEECCC
Confidence 888 999999999999999999999999865
No 71
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=98.85 E-value=2.9e-09 Score=105.21 Aligned_cols=107 Identities=23% Similarity=0.292 Sum_probs=89.3
Q ss_pred CCeEEEEeecCCCccceEEeecCCcceeeeeHHHHHHHHHhC---CCCccEEEEEcCCCCCCCCHhhHHHHHHcCcccEE
Q 006567 464 GKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLL---PYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAV 540 (640)
Q Consensus 464 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~~ 540 (640)
.++|+|++. +.|+||.+.++ +++..|+.+|+++.+++++ |+++++ .. ..|.+++..+.+|++|++
T Consensus 43 ~~~l~v~~~--~~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~~~~g~~~~~--~~-------~~~~~~~~~l~~G~~D~~ 110 (292)
T 1xt8_A 43 NGVVRIGVF--GDKPPFGYVDE-KGNNQGYDIALAKRIAKELFGDENKVQF--VL-------VEAANRVEFLKSNKVDII 110 (292)
T ss_dssp HSSEEEEEC--SEETTTEEECT-TSCEESHHHHHHHHHHHHHHSCTTCEEE--EE-------CCGGGHHHHHHTTSCSEE
T ss_pred CCeEEEEEC--CCCCCeeEECC-CCCEeeEhHHHHHHHHHHhccCCceEEE--EE-------cCHHHHHHHHhCCCeeEE
Confidence 357999986 36889988764 7899999999999999999 999544 44 339999999999999999
Q ss_pred EeeeeeeccccceEEeCccccccceEEEEecCCCCcCcceecc
Q 006567 541 VGDITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLR 583 (640)
Q Consensus 541 ~~~~~~t~~R~~~vdfs~p~~~~~~~il~~~~~~~~~~~~~l~ 583 (640)
+++++.+++|.+.++|+.|++..+..+++++.. .......|+
T Consensus 111 ~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~-~i~~~~dL~ 152 (292)
T 1xt8_A 111 LANFTQTPQRAEQVDFCSPYMKVALGVAVPKDS-NITSVEDLK 152 (292)
T ss_dssp CSSCBCCHHHHTTEEECCCCEEEEEEEEEETTC-CCCSSGGGT
T ss_pred eecCCCCcchhcceeeeccceecceEEEEECCC-CCCCHHHhC
Confidence 888899999999999999999999999999876 333334443
No 72
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=98.82 E-value=3.5e-09 Score=104.56 Aligned_cols=107 Identities=26% Similarity=0.368 Sum_probs=89.9
Q ss_pred CeEEEEeecCCCccceEEeecCCcceeeeeHHHHHHHHHhC---CCCccEEEEEcCCCCCCCCHhhHHHHHHcCcccEEE
Q 006567 465 KLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLL---PYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVV 541 (640)
Q Consensus 465 ~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~~~ 541 (640)
++|+|++. +.|+||.+.++ ++++.|+.+|+++.+++++ |++ +++.. ..|.+++..|.+|++|+++
T Consensus 55 ~~l~vg~~--~~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~~~~g~~--v~~~~-------~~~~~~~~~l~~G~~D~~~ 122 (291)
T 2yjp_A 55 GVIRIGVF--GDKPPFGYVDA-NGKNQGFDVEIAKDLAKDLLGSPDK--VEFVL-------TEAANRVEYVRSGKVDLIL 122 (291)
T ss_dssp TCEEEEEC--SEETTTEEECT-TSCEESHHHHHHHHHHHHHHSCGGG--EEEEE-------CCGGGHHHHHHTTSCSEEC
T ss_pred CeEEEEEc--CCCCCceEECC-CCCEeehHHHHHHHHHHHhccCCce--EEEEE-------ccHHHHHHHHhCCCeeEEE
Confidence 57999986 46889988764 7899999999999999999 998 44544 2399999999999999998
Q ss_pred eeeeeeccccceEEeCccccccceEEEEecCCCCcCcceeccc
Q 006567 542 GDITIVTNRTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRP 584 (640)
Q Consensus 542 ~~~~~t~~R~~~vdfs~p~~~~~~~il~~~~~~~~~~~~~l~p 584 (640)
++++.+.+|.+.++|+.|++..+..+++++.. ....+..|+.
T Consensus 123 ~~~~~~~~r~~~~~~~~p~~~~~~~l~~~~~~-~i~sl~dL~g 164 (291)
T 2yjp_A 123 ANFTQTPERAEAVDFADPYMKVALGVVSPKNK-PITDMAQLKD 164 (291)
T ss_dssp SSCBCCHHHHTTEEECCCCEEECEEEEEETTS-CCCSGGGGTT
T ss_pred eCCCCChHHHccceeccCeeecceEEEEeCCC-CCCCHHHhCC
Confidence 88999999999999999999999999999876 3333444443
No 73
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=98.78 E-value=6.1e-09 Score=100.57 Aligned_cols=98 Identities=23% Similarity=0.338 Sum_probs=85.8
Q ss_pred CeEEEEeecCCCccceEEeecCCcceeeeeHHHHHHHHHhC---CCCccEEEEEcCCCCCCCCHhhHHHHHHcCcccEEE
Q 006567 465 KLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLL---PYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVV 541 (640)
Q Consensus 465 ~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~~~ 541 (640)
++|+|++. +.++||.+.+..++++.|+.+|+++.+++++ |++ +++.. ..|.+++..|.+|++|+++
T Consensus 38 ~~l~vg~~--~~~~p~~~~~~~~g~~~G~~~~l~~~~~~~~~~pg~~--v~~~~-------~~~~~~~~~l~~g~~D~~~ 106 (259)
T 2v25_A 38 GQLIVGVK--NDVPHYALLDQATGEIKGFEVDVAKLLAKSILGDDKK--IKLVA-------VNAKTRGPLLDNGSVDAVI 106 (259)
T ss_dssp TCEEEEEC--SEETTTEEEETTTTEEESHHHHHHHHHHHHHHSCTTS--EEEEE-------CCTTTHHHHHHTTSCSEEC
T ss_pred CeEEEEEC--CCCCCeEEEECCCCeEEEeeHHHHHHHHHHhcCCCcc--eEEEE-------cCHHHHHHHHhCCCCCEEE
Confidence 57999986 4688998876447899999999999999999 988 44444 3499999999999999998
Q ss_pred eeeeeeccccceEEeCccccccceEEEEecCC
Q 006567 542 GDITIVTNRTKIVDFSQPYAASGLVVVVPFRK 573 (640)
Q Consensus 542 ~~~~~t~~R~~~vdfs~p~~~~~~~il~~~~~ 573 (640)
++++.+++|.+.++|+.|++..+..+++++..
T Consensus 107 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 138 (259)
T 2v25_A 107 ATFTITPERKRIYNFSEPYYQDAIGLLVLKEK 138 (259)
T ss_dssp SSCBCCHHHHTTEEECSCSEEEEEEEEEEGGG
T ss_pred ecCccCHHHHhcCcccccceeCceEEEEeCCC
Confidence 88889999999999999999999999998765
No 74
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=98.36 E-value=1.7e-05 Score=77.00 Aligned_cols=209 Identities=10% Similarity=-0.000 Sum_probs=135.1
Q ss_pred EEEEEEeecC-CccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcC-cEEEEcCC-ChHH
Q 006567 32 VNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETD-IVAIIGPQ-CSTV 108 (640)
Q Consensus 32 i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~-v~aiiGp~-~s~~ 108 (640)
++||++.|.. ..+-.....+++.+.++. |+++.+...++..++....+....++.++ +.+||-.. .+..
T Consensus 1 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~~~~~~~~~~~~~~~~~i~~l~~~~~vdgii~~~~~~~~ 72 (276)
T 3ksm_A 1 PKLLLVLKGDSNAYWRQVYLGAQKAADEA--------GVTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPNSAED 72 (276)
T ss_dssp CEEEEECSCSSSTHHHHHHHHHHHHHHHH--------TCEEEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECCSSTTT
T ss_pred CeEEEEeCCCCChHHHHHHHHHHHHHHHc--------CCEEEEECCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCHHH
Confidence 4899999964 333345567777776663 56666655556677777777788888888 98877543 3334
Q ss_pred HHHHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHHhc----CCcEEEEEEEcC--CCCcccHH
Q 006567 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYY----GWNAVSVIFVDN--EYGRNGVS 182 (640)
Q Consensus 109 ~~~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~~~----~w~~v~ii~~~~--~~g~~~~~ 182 (640)
.......+...++|+|......+. . .....+.+.....++.++++|... |.++++++.... .......+
T Consensus 73 ~~~~~~~~~~~~ipvV~~~~~~~~---~--~~~~~V~~d~~~~g~~~~~~l~~~~~~~G~~~i~~i~~~~~~~~~~~R~~ 147 (276)
T 3ksm_A 73 LTPSVAQYRARNIPVLVVDSDLAG---D--AHQGLVATDNYAAGQLAARALLATLDLSKERNIALLRLRAGNASTDQREQ 147 (276)
T ss_dssp THHHHHHHHHTTCCEEEESSCCSS---S--CSSEEEECCHHHHHHHHHHHHHHHSCTTSCEEEEECBCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCcEEEEecCCCC---C--CcceEEccCHHHHHHHHHHHHHHhcCcCCCceEEEEEcCCCchhHHHHHH
Confidence 444555667789999987543321 1 222445677888888899988777 899999997432 23445677
Q ss_pred HHHHHHhhc-CeEEEEeeccCCCCCCChhHHHHHHHHHhcCC--ceEEEEecChhhHHHHHHHHHHcCCccCCeEEEEeC
Q 006567 183 ALNDKLAER-RCRISYKSGIPPESGVNTGYVMDLLVKVALME--SRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATD 259 (640)
Q Consensus 183 ~~~~~~~~~-g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~vivl~~~~~~~~~il~~a~~~gl~~~~~~~i~~~ 259 (640)
.+++.+++. |+.+.....- . .+.......+.++.+.+ +++|+ +.+...+..+++++++.|+ ..+...++.+
T Consensus 148 gf~~~l~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~-p~di~vig~d 221 (276)
T 3ksm_A 148 GFLDVLRKHDKIRIIAAPYA--G--DDRGAARSEMLRLLKETPTIDGLF-TPNESTTIGALVAIRQSGM-SKQFGFIGFD 221 (276)
T ss_dssp HHHHHHTTCTTEEEEECCBC--C--SSHHHHHHHHHHHHHHCSCCCEEE-CCSHHHHHHHHHHHHHTTC-TTSSEEEEES
T ss_pred HHHHHHHhCCCcEEEEEecC--C--CcHHHHHHHHHHHHHhCCCceEEE-ECCchhhhHHHHHHHHcCC-CCCeEEEEeC
Confidence 888999888 8877632211 1 23445555566665543 45443 3445566779999999998 3344444433
No 75
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=98.35 E-value=2.9e-05 Score=76.99 Aligned_cols=208 Identities=11% Similarity=0.034 Sum_probs=130.4
Q ss_pred EEEEEEeecCCccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcCcEEEEc-CCChHHHH
Q 006567 32 VNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIG-PQCSTVAH 110 (640)
Q Consensus 32 i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aiiG-p~~s~~~~ 110 (640)
++||++.|....+......+++.+.++. |+++.+.. .+..++....+....++.+++.+||. |..+....
T Consensus 2 ~~Ig~i~~~~~~~~~~~~~gi~~~~~~~--------g~~~~~~~-~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~ 72 (313)
T 2h3h_A 2 LTIGVIGKSVHPYWSQVEQGVKAAGKAL--------GVDTKFFV-PQKEDINAQLQMLESFIAEGVNGIAIAPSDPTAVI 72 (313)
T ss_dssp CEEEEECSCSSHHHHHHHHHHHHHHHHH--------TCEEEEEC-CSSSCHHHHHHHHHHHHHTTCSEEEECCSSTTTTH
T ss_pred eEEEEEeCCCcHHHHHHHHHHHHHHHHc--------CCEEEEEC-CCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHH
Confidence 5799999875324345566777666653 45555432 23557766667777788888887775 44443322
Q ss_pred HHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHHhc--CCcEEEEEEEc--CCCCcccHHHHHH
Q 006567 111 IVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYY--GWNAVSVIFVD--NEYGRNGVSALND 186 (640)
Q Consensus 111 ~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~~~--~w~~v~ii~~~--~~~g~~~~~~~~~ 186 (640)
.....+...++|+|.+....+.. +.+..+.+.....++.++++|... |.++++++... ........+.|++
T Consensus 73 ~~~~~~~~~~iPvV~~~~~~~~~-----~~~~~V~~d~~~~g~~a~~~L~~~~~G~~~I~~i~~~~~~~~~~~R~~gf~~ 147 (313)
T 2h3h_A 73 PTIKKALEMGIPVVTLDTDSPDS-----GRYVYIGTDNYQAGYTAGLIMKELLGGKGKVVIGTGSLTAMNSLQRIQGFKD 147 (313)
T ss_dssp HHHHHHHHTTCCEEEESSCCTTS-----CCSCEEECCHHHHHHHHHHHHHHHHTSCSEEEEEESCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCeEEEeCCCCCCc-----ceeEEECcCHHHHHHHHHHHHHHHcCCCCEEEEEECCCCCccHHHHHHHHHH
Confidence 33444556799999865432210 123345677777888888887776 89999999854 2234456778899
Q ss_pred HHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcC--CceEEEEecChhhHHHHHHHHHHcCCccCCeEEEEeC
Q 006567 187 KLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATD 259 (640)
Q Consensus 187 ~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~vivl~~~~~~~~~il~~a~~~gl~~~~~~~i~~~ 259 (640)
.+++.|+.+....... .+..+....++++.+. .+++|+.. +...+..+++++++.|.+ .+...++.+
T Consensus 148 ~l~~~g~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~ai~~~-~d~~a~g~~~al~~~G~p-~dv~vvg~d 216 (313)
T 2h3h_A 148 AIKDSEIEIVDILNDE----EDGARAVSLAEAALNAHPDLDAFFGV-YAYNGPAQALVVKNAGKV-GKVKIVCFD 216 (313)
T ss_dssp HHTTSSCEEEEEEECS----SCHHHHHHHHHHHHHHCTTCCEEEEC-STTHHHHHHHHHHHTTCT-TTSEEEEEC
T ss_pred HhcCCCCEEEEeecCC----CCHHHHHHHHHHHHHHCcCceEEEEc-CCCccHHHHHHHHHcCCC-CCeEEEEeC
Confidence 9998898875432222 2244445556665543 45666654 445677889999999953 344444443
No 76
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=98.24 E-value=6.8e-05 Score=73.29 Aligned_cols=209 Identities=9% Similarity=-0.051 Sum_probs=129.1
Q ss_pred eEEEEEEeecC---CccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcCcEEEEcC-CCh
Q 006567 31 VVNVGALFTLD---STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGP-QCS 106 (640)
Q Consensus 31 ~i~IG~l~~~~---~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aiiGp-~~s 106 (640)
+.+||++.|.. ..+......+++.+.++. |+++.+...++..++....+....++.+++.+||.. ...
T Consensus 5 ~~~Ig~v~~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~ 76 (289)
T 3brs_A 5 QYYMICIPKVLDDSSDFWSVLVEGAQMAAKEY--------EIKLEFMAPEKEEDYLVQNELIEEAIKRKPDVILLAAADY 76 (289)
T ss_dssp CCEEEEECSCCCSSSHHHHHHHHHHHHHHHHH--------TCEEEECCCSSTTCHHHHHHHHHHHHHTCCSEEEECCSCT
T ss_pred CcEEEEEeCCCCCCchHHHHHHHHHHHHHHHc--------CCEEEEecCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCCh
Confidence 46799999863 333345566777666654 466655444435677666666777788889887763 333
Q ss_pred HHHHHHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHHhc-C-CcEEEEEEEcC--CCCcccHH
Q 006567 107 TVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYY-G-WNAVSVIFVDN--EYGRNGVS 182 (640)
Q Consensus 107 ~~~~~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~~~-~-w~~v~ii~~~~--~~g~~~~~ 182 (640)
.........+...++|+|......+. .+.+..+.+.....++.++++|... | .++++++.... .......+
T Consensus 77 ~~~~~~~~~~~~~~iPvV~~~~~~~~-----~~~~~~V~~D~~~~g~~~~~~L~~~~G~~~~i~~i~~~~~~~~~~~R~~ 151 (289)
T 3brs_A 77 EKTYDAAKEIKDAGIKLIVIDSGMKQ-----DIADITVATDNIQAGIRIGAVTKNLVRKSGKIGVISFVKNSKTAMDREE 151 (289)
T ss_dssp TTTHHHHTTTGGGTCEEEEESSCCSS-----CCCSEEEECCHHHHHHHHHHHHHHHTSSSCEEEEEESCTTSHHHHHHHH
T ss_pred HHhHHHHHHHHHCCCcEEEECCCCCC-----CcceEEEeeChHHHHHHHHHHHHHHcCCCceEEEEECCCCCccHHHHHH
Confidence 32223344555679999986443221 1234556777888888888887764 6 99999998542 23445667
Q ss_pred HHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcC--CceEEEEecChhhHHHHHHHHHHcCCccCCeEEEEe
Q 006567 183 ALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIAT 258 (640)
Q Consensus 183 ~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~vivl~~~~~~~~~il~~a~~~gl~~~~~~~i~~ 258 (640)
.+++.+++.|..+....... .+..+....+.++.+. .+++|+. .+...+..+++++++.|+. .+...++.
T Consensus 152 gf~~~l~~~g~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~G~~-~di~vvg~ 223 (289)
T 3brs_A 152 GLKIGLSDDSNKIEAIYYCD----SNYDKAYDGTVELLTKYPDISVMVG-LNQYSATGAARAIKDMSLE-AKVKLVCI 223 (289)
T ss_dssp HHHHHHGGGGGGEEEEEECT----TCHHHHHHHHHHHHHHCTTEEEEEE-SSHHHHHHHHHHHHHTTCT-TTSEEEEE
T ss_pred HHHHHHHhCCCcEEeeecCC----CCHHHHHHHHHHHHHhCCCceEEEE-CCCcchHHHHHHHHhcCCC-CCEEEEEE
Confidence 88889988886543222111 2244444555555543 3555543 4555677889999999986 44444443
No 77
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=98.24 E-value=2.4e-05 Score=76.78 Aligned_cols=211 Identities=8% Similarity=-0.036 Sum_probs=128.5
Q ss_pred CeeEEEEEEeec---CCccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcCcEEEEcCCC
Q 006567 29 PAVVNVGALFTL---DSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQC 105 (640)
Q Consensus 29 ~~~i~IG~l~~~---~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aiiGp~~ 105 (640)
..+.+||+++|. +..+......+++.+.++. |+++. +.++..++....+....++.+++.+||....
T Consensus 17 ~~~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~ 86 (296)
T 3brq_A 17 KSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEK--------GRQLL--LADGKHSAEEERQAIQYLLDLRCDAIMIYPR 86 (296)
T ss_dssp --CCEEEEEECGGGCC--CHHHHHHHHHHHHHHT--------TCEEE--EECCTTSHHHHHHHHHHHHHTTCSEEEEECS
T ss_pred CCCceEEEEeCCcccCCchHHHHHHHHHHHHHHC--------CCEEE--EEeCCCCHHHHHHHHHHHHhcCCCEEEEecC
Confidence 346789999996 3444456677777766652 55544 4566667766666677777788888776332
Q ss_pred hHHHHHHHHhhcc-CCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcC--CCCcccHH
Q 006567 106 STVAHIVSYVSNE-LQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDN--EYGRNGVS 182 (640)
Q Consensus 106 s~~~~~v~~~~~~-~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~~~--~~g~~~~~ 182 (640)
......+. .+.. .++|+|......+ + +.+..+.......+..++++|...|.++++++..+. ..+....+
T Consensus 87 ~~~~~~~~-~l~~~~~iPvV~~~~~~~---~---~~~~~V~~d~~~~~~~a~~~l~~~G~~~I~~i~~~~~~~~~~~R~~ 159 (296)
T 3brq_A 87 FLSVDEID-DIIDAHSQPIMVLNRRLR---K---NSSHSVWCDHKQTSFNAVAELINAGHQEIAFLTGSMDSPTSIERLA 159 (296)
T ss_dssp SSCHHHHH-HHHHTCSSCEEEESCCCS---S---SGGGEECCCHHHHHHHHHHHHHHTTCCSEEEECCCTTCHHHHHHHH
T ss_pred CCChHHHH-HHHhcCCCCEEEEccccC---C---CCCCEEEEchHHHHHHHHHHHHHCCCceEEEEcCCCCCccHHHHHH
Confidence 21122233 3444 7999998643322 1 122345566777778888888888999999997543 23445677
Q ss_pred HHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcC--CceEEEEecChhhHHHHHHHHHHcCCccC-CeEEEEeC
Q 006567 183 ALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGN-GYVWIATD 259 (640)
Q Consensus 183 ~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~vivl~~~~~~~~~il~~a~~~gl~~~-~~~~i~~~ 259 (640)
.|++.+++.|+.+.....+... .+..+....++++.+. ++++|+.. +...+..+++++++.|+.-+ +...++.+
T Consensus 160 gf~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~~-~d~~a~g~~~al~~~g~~vP~di~vvg~d 236 (296)
T 3brq_A 160 GYKDALAQHGIALNEKLIANGK--WTPASGAEGVEMLLERGAKFSALVAS-NDDMAIGAMKALHERGVAVPEQVSVIGFD 236 (296)
T ss_dssp HHHHHHHTTTCCCCGGGEECCC--SSHHHHHHHHHHHHTC--CCSEEEES-SHHHHHHHHHHHHHHTCCTTTTCEEEEES
T ss_pred HHHHHHHHcCCCCChhhEEeCC--CChhHHHHHHHHHHhCCCCCCEEEEC-ChHHHHHHHHHHHHcCCCCCCceEEEeec
Confidence 8888998888765322111111 2234444556666543 46766644 45567788999999998643 33444433
No 78
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=98.17 E-value=0.00016 Score=71.07 Aligned_cols=210 Identities=10% Similarity=-0.045 Sum_probs=127.6
Q ss_pred eeEEEEEEeecC-CccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcCcEEEE-cCCChH
Q 006567 30 AVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAII-GPQCST 107 (640)
Q Consensus 30 ~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aii-Gp~~s~ 107 (640)
++.+||++.|.. ..+......+++.+.++. |+++.+ ..++..++....+....++.+++.+|| .|..+.
T Consensus 3 ~~~~Ig~i~~~~~~~~~~~~~~g~~~~~~~~--------g~~~~~-~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~ 73 (303)
T 3d02_A 3 AEKTVVNISKVDGMPWFNRMGEGVVQAGKEF--------NLNASQ-VGPSSTDAPQQVKIIEDLIARKVDAITIVPNDAN 73 (303)
T ss_dssp -CEEEEEECSCSSCHHHHHHHHHHHHHHHHT--------TEEEEE-ECCSSSCHHHHHHHHHHHHHTTCSEEEECCSCHH
T ss_pred CceEEEEEeccCCChHHHHHHHHHHHHHHHc--------CCEEEE-ECCCCCCHHHHHHHHHHHHHcCCCEEEEecCChH
Confidence 468899999864 334445667777777663 444432 234566777766777778888888766 455444
Q ss_pred HHHHHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHHh-cCCc-EEEEEEEcC--CCCcccHHH
Q 006567 108 VAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSY-YGWN-AVSVIFVDN--EYGRNGVSA 183 (640)
Q Consensus 108 ~~~~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~~-~~w~-~v~ii~~~~--~~g~~~~~~ 183 (640)
........+...++|+|...... ... +.+..+.......++.++++|.. .|.+ +++++.... .......+.
T Consensus 74 ~~~~~~~~~~~~~ipvV~~~~~~--~~~---~~~~~v~~d~~~~g~~a~~~l~~~~g~~~~i~~i~g~~~~~~~~~R~~g 148 (303)
T 3d02_A 74 VLEPVFKKARDAGIVVLTNESPG--QPS---ANWDVEIIDNEKFAAEYVEHMAKRMGGKGGYVIYVGSLTVPQHNLWADL 148 (303)
T ss_dssp HHHHHHHHHHHTTCEEEEESCTT--CTT---CSEEEESSCHHHHHHHHHHHHHHHTTTCEEEEEECSCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCeEEEEecCC--CCC---CceEEEecCHHHHHHHHHHHHHHHhCcCceEEEEecCCCCccHHHHHHH
Confidence 43344455666799999865431 111 23445667777778888888776 7887 998886432 223445677
Q ss_pred HHHHHhhcC--eEEEEeeccCCCCCCChhHHHHHHHHHhcCC--ceEEEEecChhhHHHHHHHHHHcCCccCCeEEEEe
Q 006567 184 LNDKLAERR--CRISYKSGIPPESGVNTGYVMDLLVKVALME--SRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIAT 258 (640)
Q Consensus 184 ~~~~~~~~g--~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~vivl~~~~~~~~~il~~a~~~gl~~~~~~~i~~ 258 (640)
|++.+++.+ +++... .+... .+..+....++++.+.. +++|+. .+...+..+++++++.|+. .+...++.
T Consensus 149 f~~~l~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~-~dv~vig~ 222 (303)
T 3d02_A 149 LVKYQKEHYPDMHEVTR-RMPVA--ESVDDSRRTTLDLMKTYPDLKAVVS-FGSNGPIGAGRAVKEKRAK-NKVAVYGM 222 (303)
T ss_dssp HHHHHHHHCTTEEESSS-CBSCT--TCHHHHHHHHHHHHHHCTTEEEEEE-SSTTHHHHHHHHHHHTTCT-TTCEEEEC
T ss_pred HHHHHHhhCCCCEEEEe-ecCCC--CCHHHHHHHHHHHHHhCCCCCEEEE-eCCcchhHHHHHHHhcCCC-CCeEEEEe
Confidence 888887654 443211 11111 23444555666665543 455444 3445677889999999986 34444443
No 79
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=98.16 E-value=1.8e-05 Score=77.53 Aligned_cols=201 Identities=9% Similarity=-0.010 Sum_probs=121.1
Q ss_pred CeeEEEEEEeecCCccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcCcEEEEcCCChHH
Q 006567 29 PAVVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTV 108 (640)
Q Consensus 29 ~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aiiGp~~s~~ 108 (640)
..+.+||++.|.+..+......+++.+.++ .|+++.+ .++..++....+....++.+++.+||.......
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~gi~~~~~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 75 (288)
T 2qu7_A 6 GRSNIIAFIVPDQNPFFTEVLTEISHECQK--------HHLHVAV--ASSEENEDKQQDLIETFVSQNVSAIILVPVKSK 75 (288)
T ss_dssp -CEEEEEEEESSCCHHHHHHHHHHHHHHGG--------GTCEEEE--EECTTCHHHHHHHHHHHHHTTEEEEEECCSSSC
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHHHHHH--------CCCEEEE--EeCCCCHHHHHHHHHHHHHcCccEEEEecCCCC
Confidence 456789999997222223344454444443 2555544 455667766666677777889998886433322
Q ss_pred HHHHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcC--CCCcccHHHHHH
Q 006567 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDN--EYGRNGVSALND 186 (640)
Q Consensus 109 ~~~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~~~--~~g~~~~~~~~~ 186 (640)
...+..+ .++|+|......+. +.+..+.......++.++++|...|.++++++.... .......+.|++
T Consensus 76 ~~~~~~l---~~iPvV~~~~~~~~------~~~~~V~~d~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~~ 146 (288)
T 2qu7_A 76 FQMKREW---LKIPIMTLDRELES------TSLPSITVDNEEAAYIATKRVLESTCKEVGLLLANPNISTTIGRKNGYNK 146 (288)
T ss_dssp CCCCGGG---GGSCEEEESCCCSS------CCCCEEEECHHHHHHHHHHHHHTSSCCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred hHHHHHh---cCCCEEEEecccCC------CCCCEEEECcHHHHHHHHHHHHHcCCCcEEEEecCCCCCCHHHHHHHHHH
Confidence 1222222 78999986543221 123345667777888888988888999999998542 234456678888
Q ss_pred HHhhcCeEEEEeecc--CCCCCC----ChhHHHHHHHHHhcCCceEEEEecChhhHHHHHHHHHHcCCccC
Q 006567 187 KLAERRCRISYKSGI--PPESGV----NTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGN 251 (640)
Q Consensus 187 ~~~~~g~~v~~~~~~--~~~~~~----~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~il~~a~~~gl~~~ 251 (640)
.+++.|+.+.....+ ... . +..+-...++++.+.++++|+.. +...+..+++++++.|+.-+
T Consensus 147 ~l~~~g~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~ai~~~-~d~~a~g~~~al~~~g~~vP 214 (288)
T 2qu7_A 147 AISEFDLNVNPSLIHYSDQQ--LGTNAQIYSGYEATKTLLSKGIKGIVAT-NHLLLLGALQAIKESEKEIK 214 (288)
T ss_dssp HHHHTTCCCCGGGEEECCSS--CSHHHHHHHHHHHHHHHHHTTCCEEEEC-SHHHHHHHHHHHHHSSCCBT
T ss_pred HHHHcCCCCCcceEEeccCC--ccccCCHHHHHHHHHHHHhcCCCEEEEC-CcHHHHHHHHHHHHhCCCCC
Confidence 898888764321111 111 1 12233334444444467776654 45567788999999998644
No 80
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=98.16 E-value=7.1e-05 Score=73.14 Aligned_cols=202 Identities=8% Similarity=0.001 Sum_probs=123.3
Q ss_pred eeEEEEEEeecC-CccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcCcEEEEc-CCChH
Q 006567 30 AVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIG-PQCST 107 (640)
Q Consensus 30 ~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aiiG-p~~s~ 107 (640)
.+.+||++.|.. ..+......+++.+.++. |+++.+ .++..++....+....++.+++.+||. |....
T Consensus 6 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~ 75 (289)
T 1dbq_A 6 HTKSIGLLATSSEAAYFAEIIEAVEKNCFQK--------GYTLIL--GNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYP 75 (289)
T ss_dssp --CEEEEEESCTTSHHHHHHHHHHHHHHHHH--------TCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEEECSCCC
T ss_pred CCCEEEEEeCCCCChHHHHHHHHHHHHHHHc--------CCeEEE--EcCCCChHHHHHHHHHHHhCCCCEEEEEeccCC
Confidence 456899999864 333345566777666653 455544 455667766666677777788887775 33221
Q ss_pred HHHHHHHhhc-cCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHHhcCCcEEEEEEEc--CCCCcccHHHH
Q 006567 108 VAHIVSYVSN-ELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVD--NEYGRNGVSAL 184 (640)
Q Consensus 108 ~~~~v~~~~~-~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~~--~~~g~~~~~~~ 184 (640)
. .+...+. ..++|+|......+. . +....+.+.....++.++++|...|.++++++..+ ........+.+
T Consensus 76 ~--~~~~~l~~~~~iPvV~~~~~~~~---~--~~~~~V~~d~~~~~~~~~~~L~~~G~~~i~~i~~~~~~~~~~~R~~g~ 148 (289)
T 1dbq_A 76 E--PLLAMLEEYRHIPMVVMDWGEAK---A--DFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGF 148 (289)
T ss_dssp H--HHHHHHHHTTTSCEEEEECSSCC---S--SSCEEEEECHHHHHHHHHHHHHHTTCCSEEEECCC------CHHHHHH
T ss_pred H--HHHHHHHhccCCCEEEEccCCCc---c--CcCCEEEeCcHHHHHHHHHHHHHCCCCeEEEEecCCccccHHHHHHHH
Confidence 1 1223333 369999986543221 1 12234566777778888898888899999999753 33456678889
Q ss_pred HHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcC--CceEEEEecChhhHHHHHHHHHHcCCccC
Q 006567 185 NDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGN 251 (640)
Q Consensus 185 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~vivl~~~~~~~~~il~~a~~~gl~~~ 251 (640)
++.+++.|+.+.....+... .+..+....++++.+. .+++|+. .+...+..+++++++.|+.-+
T Consensus 149 ~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~G~~vP 214 (289)
T 1dbq_A 149 MKAMEEAMIKVPESWIVQGD--FEPESGYRAMQQILSQPHRPTAVFC-GGDIMAMGALCAADEMGLRVP 214 (289)
T ss_dssp HHHHHHTTCCCCGGGBCCCC--SSHHHHHHHHHHHHTSSSCCSEEEE-SCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHCCCCCChHHeEeCC--CCHHHHHHHHHHHHhCCCCCCEEEE-CCcHHHHHHHHHHHHcCCCCC
Confidence 99999988764321111111 1234444556666553 5666655 445667788999999998643
No 81
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=98.16 E-value=5.5e-05 Score=74.55 Aligned_cols=211 Identities=9% Similarity=-0.020 Sum_probs=128.4
Q ss_pred CeeEEEEEEeecC--CccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEc-cCCCChHHHHHHHHHhHhcCcEEEEc-CC
Q 006567 29 PAVVNVGALFTLD--STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQ-SSNCSGFIGMVEALRFMETDIVAIIG-PQ 104 (640)
Q Consensus 29 ~~~i~IG~l~~~~--~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~-D~~~~~~~a~~~a~~l~~~~v~aiiG-p~ 104 (640)
..+.+||+++|.. ..+-.....+++.+.++.+ |+.+.+... +...++..-.+....++.+++.+||- |.
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~~-------g~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 78 (304)
T 3gbv_A 6 NKKYTFACLLPKHLEGEYWTDVQKGIREAVTTYS-------DFNISANITHYDPYDYNSFVATSQAVIEEQPDGVMFAPT 78 (304)
T ss_dssp -CCEEEEEEEECCCTTSHHHHHHHHHHHHHHHTG-------GGCEEEEEEEECSSCHHHHHHHHHHHHTTCCSEEEECCS
T ss_pred CCcceEEEEecCCCCchHHHHHHHHHHHHHHHHH-------hCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEECCC
Confidence 4568999999984 3333455666666666531 455555544 34456666566667777888887764 44
Q ss_pred ChHHHHHHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHHhcCC--cEEEEEEEcC------CC
Q 006567 105 CSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGW--NAVSVIFVDN------EY 176 (640)
Q Consensus 105 ~s~~~~~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~~~~w--~~v~ii~~~~------~~ 176 (640)
...........+...++|+|......+.. +.+-.+.+.....++.++++|...+. ++++++.... ..
T Consensus 79 ~~~~~~~~~~~~~~~~iPvV~~~~~~~~~-----~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~i~~i~~~~~g~~~~~~ 153 (304)
T 3gbv_A 79 VPQYTKGFTDALNELGIPYIYIDSQIKDA-----PPLAFFGQNSHQSGYFAARMLMLLAVNDREIVIFRKIHEGVIGSNQ 153 (304)
T ss_dssp SGGGTHHHHHHHHHHTCCEEEESSCCTTS-----CCSEEEECCHHHHHHHHHHHHHHHSTTCSEEEEEEEEBTTBCCCHH
T ss_pred ChHHHHHHHHHHHHCCCeEEEEeCCCCCC-----CceEEEecChHHHHHHHHHHHHHHhCCCCeEEEEEecccCCccchh
Confidence 44333444555666799999865433211 12345567778888888999888887 9999997431 23
Q ss_pred CcccHHHHHHHHhhcCeEE--EEeeccCCCCCCChhHHHHHHHHHhc--CCceEEEEecChhhHHHHHHHHHHcCCccCC
Q 006567 177 GRNGVSALNDKLAERRCRI--SYKSGIPPESGVNTGYVMDLLVKVAL--MESRVIVLHVSPSLGFQVFSVAKYLGMMGNG 252 (640)
Q Consensus 177 g~~~~~~~~~~~~~~g~~v--~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~vivl~~~~~~~~~il~~a~~~gl~~~~ 252 (640)
.....+.+++.+++.|..+ .....-... .......+.++.+ ..+++|+...+. +..+++++++.|+ .+
T Consensus 154 ~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~ai~~~~d~--a~g~~~al~~~g~--~d 225 (304)
T 3gbv_A 154 QESREIGFRQYMQEHHPACNILELNLHADL----NIEDSRMLDDFFREHPDVKHGITFNSK--VYIIGEYLQQRRK--SD 225 (304)
T ss_dssp HHHHHHHHHHHHHHHCTTSEEEEEEEESSC----SSCHHHHHHHHHHHCTTCCEEEESSSC--THHHHHHHHHTTC--CS
T ss_pred HHHHHHHHHHHHHhhCCCcEEEEeeecCCC----HHHHHHHHHHHHHhCCCeEEEEEcCcc--hHHHHHHHHHcCC--CC
Confidence 3455678888888877543 222111111 1222333444333 357777766654 6779999999998 44
Q ss_pred eEEEEeC
Q 006567 253 YVWIATD 259 (640)
Q Consensus 253 ~~~i~~~ 259 (640)
...++.+
T Consensus 226 i~vig~d 232 (304)
T 3gbv_A 226 FSLIGYD 232 (304)
T ss_dssp CEEEEES
T ss_pred cEEEEeC
Confidence 4555543
No 82
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=98.15 E-value=0.00012 Score=73.31 Aligned_cols=205 Identities=8% Similarity=-0.006 Sum_probs=127.4
Q ss_pred eeEEEEEEeecC-CccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcC--cEEEEcCC-C
Q 006567 30 AVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETD--IVAIIGPQ-C 105 (640)
Q Consensus 30 ~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~--v~aiiGp~-~ 105 (640)
.+.+||+++|.. ..+-.....+++.+.++. |+++. +.++..++....+....+++++ +.+||... .
T Consensus 4 ~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~l~--~~~~~~~~~~~~~~i~~l~~~~~~vdgiIi~~~~ 73 (332)
T 2rjo_A 4 GQTTLACSFRSLTNPYYTAFNKGAQSFAKSV--------GLPYV--PLTTEGSSEKGIADIRALLQKTGGNLVLNVDPND 73 (332)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHH--------TCCEE--EEECTTCHHHHHHHHHHHHHHTTTCEEEEECCSS
T ss_pred CccEEEEEecCCCcHHHHHHHHHHHHHHHHc--------CCEEE--EecCCCCHHHHHHHHHHHHHCCCCCCEEEEeCCC
Confidence 356899999853 333334456666655553 34443 4456667766666677777788 99887643 3
Q ss_pred hHHHHHHHHhhccCCceEEecccCCCCCCCCCC--CcEEEecCCchHHHHHHHHHHHh--cCCcEEEEEEEcC--CCCcc
Q 006567 106 STVAHIVSYVSNELQVPLLSFGVTDPTLSSLQY--PFFVRTTQSDSYQMTAVAEMVSY--YGWNAVSVIFVDN--EYGRN 179 (640)
Q Consensus 106 s~~~~~v~~~~~~~~iP~is~~~~~~~l~~~~~--~~~~r~~p~~~~~~~al~~ll~~--~~w~~v~ii~~~~--~~g~~ 179 (640)
..........+...++|+|......+......+ +.+..+.......++.++++|.. .|.+++++|.... .....
T Consensus 74 ~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~~G~~~I~~i~g~~~~~~~~~ 153 (332)
T 2rjo_A 74 SADARVIVEACSKAGAYVTTIWNKPKDLHPWDYNPNYVAHLSYDGVAYGEETATQLFKSMGGKGGVVALGGIFSNVPAIE 153 (332)
T ss_dssp HHHHHHHHHHHHHHTCEEEEESCCCTTCCGGGGTTTEEEEEECCHHHHHHHHHHHHHHHTTTCEEEEEEECCTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCeEEEECCCCCcccchhcccceeEEEccChHHHHHHHHHHHHHHcCCCCeEEEEECCCCCccHHH
Confidence 333323444455679999986543322111111 24566777888888888898777 6999999998542 23445
Q ss_pred cHHHHHHHHhhc-CeEEEEeeccCCCCCCChhHHHHHHHHHhcC---CceEEEEecChhhHHHHHHHHHHcCCc
Q 006567 180 GVSALNDKLAER-RCRISYKSGIPPESGVNTGYVMDLLVKVALM---ESRVIVLHVSPSLGFQVFSVAKYLGMM 249 (640)
Q Consensus 180 ~~~~~~~~~~~~-g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~vivl~~~~~~~~~il~~a~~~gl~ 249 (640)
..+.|++.+++. |+.+.....-. .+..+....++++.+. .+++|+. .+...+..+++++++.|+.
T Consensus 154 R~~Gf~~al~~~pgi~~~~~~~~~----~~~~~~~~~~~~ll~~~~~~~~aI~~-~nd~~A~g~~~al~~~G~~ 222 (332)
T 2rjo_A 154 RKAGLDAALKKFPGIQLLDFQVAD----WNSQKAFPIMQAWMTRFNSKIKGVWA-ANDDMALGAIEALRAEGLA 222 (332)
T ss_dssp HHHHHHHHHHTCTTEEEEEEEECT----TCHHHHHHHHHHHHHHHGGGEEEEEE-SSHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHhCCCcEEEeeccCC----CCHHHHHHHHHHHHHhcCCCeeEEEE-CCCchHHHHHHHHHHcCCC
Confidence 677889999998 88775432111 1244444555555443 3555543 4455677899999999986
No 83
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=98.11 E-value=5.7e-05 Score=74.42 Aligned_cols=206 Identities=6% Similarity=-0.092 Sum_probs=127.0
Q ss_pred CeeEEEEEEeecC-CccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcCcEEEE-cCCCh
Q 006567 29 PAVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAII-GPQCS 106 (640)
Q Consensus 29 ~~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aii-Gp~~s 106 (640)
..+.+||+++|.. ..+-.....+++.+.++. |+++.+...+...++....+....++.+++.+|| .|...
T Consensus 3 ~~~~~Igvi~~~~~~~~~~~~~~g~~~~a~~~--------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~ 74 (304)
T 3o1i_D 3 GSDEKICAIYPHLKDSYWLSVNYGMVSEAEKQ--------GVNLRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTVDP 74 (304)
T ss_dssp --CCEEEEEESCSCSHHHHHHHHHHHHHHHHH--------TCEEEEEECSSTTCHHHHHHHHHHHHHHTCSEEEECCSST
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHHc--------CCeEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCh
Confidence 3467999999964 322234456666665553 5555554444333777777777778888888776 44444
Q ss_pred HHHHHHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHHhcC-----CcEEEEEEEc--CCCCcc
Q 006567 107 TVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYG-----WNAVSVIFVD--NEYGRN 179 (640)
Q Consensus 107 ~~~~~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~~~~-----w~~v~ii~~~--~~~g~~ 179 (640)
.........+. .+||+|......+.......+.+..+.+.....++.++++|...+ -++++++... ......
T Consensus 75 ~~~~~~~~~~~-~~iPvV~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~~~~i~~i~~~~~~~~~~~ 153 (304)
T 3o1i_D 75 HAYEHNLKSWV-GNTPVFATVNQLDLDEEQSTLLKGEVGVDWYWMGYEAGKYLAERHPKGSGKTNIALLLGPRTRGGTKP 153 (304)
T ss_dssp TSSTTTHHHHT-TTSCEEECSSCCCCCTTTGGGEEEECCCCHHHHHHHHHHHHHTTSBTTTCCEEEEEECCCC-----CH
T ss_pred hHHHHHHHHHc-CCCCEEEecCCCcccccCCCceEEEEecCHHHHHHHHHHHHHHhcccCCCCCEEEEEECCCCcchHHH
Confidence 32222234445 899999874333211111224456677888888888899988888 8899999743 234455
Q ss_pred cHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHh-cCCceEEEEecChhhHHHHHHHHHHcCCc
Q 006567 180 GVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVA-LMESRVIVLHVSPSLGFQVFSVAKYLGMM 249 (640)
Q Consensus 180 ~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~-~~~~~vivl~~~~~~~~~il~~a~~~gl~ 249 (640)
..+.+++.+++.|+.+.... ... .+.......++++. ...+++ + +++...+..+++++++.|+.
T Consensus 154 R~~gf~~~l~~~~~~~~~~~--~~~--~~~~~~~~~~~~~l~~~~~~a-i-~~~d~~a~g~~~al~~~g~~ 218 (304)
T 3o1i_D 154 VTTGFYEAIKNSDIHIVDSF--WAD--NDKELQRNLVQRVIDMGNIDY-I-VGSAVAIEAAISELRSADKT 218 (304)
T ss_dssp HHHHHHHTTTTBTEEEEECC--CCC--SCHHHHHHHHHHHHHHSCCSE-E-EECHHHHHHHHHHHTTTTCG
T ss_pred HHHHHHHHHhcCCCEEEEee--cCC--CcHHHHHHHHHHHHcCCCCCE-E-EecCcchHHHHHHHHhcCCC
Confidence 67889999998888776533 111 22333334444433 235677 4 45667788899999999875
No 84
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=98.11 E-value=7.4e-05 Score=73.42 Aligned_cols=204 Identities=8% Similarity=-0.047 Sum_probs=131.9
Q ss_pred eEEEEEEeecC-CccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcCcEEEE-cCCChHH
Q 006567 31 VVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAII-GPQCSTV 108 (640)
Q Consensus 31 ~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aii-Gp~~s~~ 108 (640)
.++||++.|.. ..+-.....+++.+.++. |+++.+...++..++..-.+....++.+++.+|| .|.....
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~ 74 (297)
T 3rot_A 3 RDKYYLITHGSQDPYWTSLFQGAKKAAEEL--------KVDLQILAPPGANDVPKQVQFIESALATYPSGIATTIPSDTA 74 (297)
T ss_dssp CCEEEEECSCCCSHHHHHHHHHHHHHHHHH--------TCEEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCCCSST
T ss_pred eEEEEEEecCCCCchHHHHHHHHHHHHHHh--------CcEEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCCHHH
Confidence 47899999975 334445667777777763 4555544322225777777777788888888766 4555444
Q ss_pred HHHHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHHhcC--CcEEEEEEEcC--CCCcccHHHH
Q 006567 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYG--WNAVSVIFVDN--EYGRNGVSAL 184 (640)
Q Consensus 109 ~~~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~~~~--w~~v~ii~~~~--~~g~~~~~~~ 184 (640)
.......+...+||+|......+... ..+.+..+.+.....++.++++|...+ -++++++.... .......+.+
T Consensus 75 ~~~~~~~~~~~giPvV~~~~~~~~~~--~~~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~i~~i~g~~~~~~~~~R~~Gf 152 (297)
T 3rot_A 75 FSKSLQRANKLNIPVIAVDTRPKDKT--KNPYLVFLGSDNLLAGKKLGEKALELTPSAKRALVLNPQPGHIGLEKRAYGI 152 (297)
T ss_dssp THHHHHHHHHHTCCEEEESCCCSCTT--TSCCSCEEECCHHHHHHHHHHHHHHHCTTCCEEEEEESCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCEEEEcCCCcccc--ccCcceEEccChHHHHHHHHHHHHHhcCCCceEEEEeCCCCcHHHHHHHHHH
Confidence 44455566677999998754433211 112344566778888889999888877 89999997442 2334566789
Q ss_pred HHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcC--CceEEEEecChhhHHHHHHHHHHcCCcc
Q 006567 185 NDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMG 250 (640)
Q Consensus 185 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~vivl~~~~~~~~~il~~a~~~gl~~ 250 (640)
++.+++.|+++.... . . .........++++.+. .+++|+. .+...+.-+++++++.|+.-
T Consensus 153 ~~~l~~~g~~~~~~~--~-~--~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~A~g~~~al~~~g~~v 214 (297)
T 3rot_A 153 KTILQDKGIFFEELD--V-G--TDPNQVQSRVKSYFKIHPETNIIFC-LTSQALDPLGQMLLHPDRYD 214 (297)
T ss_dssp HHHHHHTTCEEEEEE--C-C--SCHHHHHHHHHHHHHHCTTCCEEEE-SSHHHHHHHHHHHHSHHHHT
T ss_pred HHHHHhcCCeEEEee--c-C--CChHHHHHHHHHHHHhCCCCCEEEE-cCCcchHHHHHHHHhcCCcc
Confidence 999999998886543 1 1 2244555556664443 3455443 45566677888888888753
No 85
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=98.11 E-value=0.00014 Score=71.71 Aligned_cols=187 Identities=13% Similarity=0.149 Sum_probs=116.8
Q ss_pred eeEEEEEEeecCCccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcCcEEEEcCCChHHH
Q 006567 30 AVVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTVA 109 (640)
Q Consensus 30 ~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aiiGp~~s~~~ 109 (640)
++.+||++.+.+...-.....+++ +.+++.+.. .|.++.+.+.|+..++......+..+.+++|++||..... ..
T Consensus 7 ~t~~IGvi~~~~~p~~~~~~~gi~---~~l~~~Gy~-~g~~v~l~~~~~~~~~~~~~~~~~~l~~~~vDgII~~~~~-~~ 81 (302)
T 2qh8_A 7 KTAKVAVSQIVEHPALDATRQGLL---DGLKAKGYE-EGKNLEFDYKTAQGNPAIAVQIARQFVGENPDVLVGIATP-TA 81 (302)
T ss_dssp CCEEEEEEESSCCHHHHHHHHHHH---HHHHHTTCC-BTTTEEEEEEECTTCHHHHHHHHHHHHHTCCSEEEEESHH-HH
T ss_pred CCcEEEEEEeccChhHHHHHHHHH---HHHHHcCCC-CCCceEEEEecCCCCHHHHHHHHHHHHhCCCCEEEECChH-HH
Confidence 578999884333332223334443 344544433 4678888889999999888888888888889888874432 22
Q ss_pred HHHHHhhccCCceEEecccCCCCCC------CCCCCcEEEecCCchHHHHHHHHHHHhc--CCcEEEEEEEcCC-CCccc
Q 006567 110 HIVSYVSNELQVPLLSFGVTDPTLS------SLQYPFFVRTTQSDSYQMTAVAEMVSYY--GWNAVSVIFVDNE-YGRNG 180 (640)
Q Consensus 110 ~~v~~~~~~~~iP~is~~~~~~~l~------~~~~~~~~r~~p~~~~~~~al~~ll~~~--~w~~v~ii~~~~~-~g~~~ 180 (640)
..+.. ...++|+|......+... .....++.... +...+...++++.+. |.+++++|+.... .+...
T Consensus 82 ~~~~~--~~~~iPvV~~~~~~~~~~~~v~~~~~~~~~~~gv~--~~~~~~~~~~~l~~~~Pg~~~I~~i~~~~~~~~~~r 157 (302)
T 2qh8_A 82 QALVS--ATKTIPIVFTAVTDPVGAKLVKQLEQPGKNVTGLS--DLSPVEQHVELIKEILPNVKSIGVVYNPGEANAVSL 157 (302)
T ss_dssp HHHHH--HCSSSCEEEEEESCTTTTTSCSCSSSCCSSEEEEE--CCCCHHHHHHHHHHHSTTCCEEEEEECTTCHHHHHH
T ss_pred HHHHh--cCCCcCEEEEecCCHhhcCccccccCCCCCEEEEE--CCcCHHHHHHHHHHhCCCCcEEEEEecCCCcchHHH
Confidence 33333 267999997654433211 01113333333 122245566777766 9999999996533 34556
Q ss_pred HHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecC
Q 006567 181 VSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVS 232 (640)
Q Consensus 181 ~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~ 232 (640)
.+.+++.+++.|+.+...... +..+....++++.. ++++|++..+
T Consensus 158 ~~g~~~al~~~gi~~~~~~~~------~~~~~~~~~~~l~~-~~dai~~~~D 202 (302)
T 2qh8_A 158 MELLKLSAAKHGIKLVEATAL------KSADVQSATQAIAE-KSDVIYALID 202 (302)
T ss_dssp HHHHHHHHHHTTCEEEEEECS------SGGGHHHHHHHHGG-GCSEEEECSC
T ss_pred HHHHHHHHHHcCCEEEEEecC------ChHHHHHHHHHHhc-cCCEEEECCc
Confidence 788999999999987654322 14566777777764 6788777654
No 86
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=98.09 E-value=0.00027 Score=70.13 Aligned_cols=205 Identities=11% Similarity=-0.005 Sum_probs=123.5
Q ss_pred EEEEEeecC-CccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEc-cCCCChHHHHHHHHHhHhcCcEEEE-cCCChHHH
Q 006567 33 NVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQ-SSNCSGFIGMVEALRFMETDIVAII-GPQCSTVA 109 (640)
Q Consensus 33 ~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~-D~~~~~~~a~~~a~~l~~~~v~aii-Gp~~s~~~ 109 (640)
+||++.|.. ..+......+++.+.++. |+++ .+. ++..++..-.+....++.++|.+|| .|..+...
T Consensus 5 ~Igvi~~~~~~~~~~~~~~g~~~~~~~~--------g~~~--~~~~~~~~d~~~q~~~i~~li~~~vdgiii~~~~~~~~ 74 (316)
T 1tjy_A 5 RIAFIPKLVGVGFFTSGGNGAQEAGKAL--------GIDV--TYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGL 74 (316)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHHHHHH--------TCEE--EECCCSSCCHHHHHHHHHHHHHTTCSEEEECCSSSSTT
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHHh--------CCEE--EEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHH
Confidence 799999864 333345566777766664 3443 444 3567777777778888888988755 55555443
Q ss_pred HHHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHHh---cCCcEEEEEEEcC--CCCcccHHHH
Q 006567 110 HIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSY---YGWNAVSVIFVDN--EYGRNGVSAL 184 (640)
Q Consensus 110 ~~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~~---~~w~~v~ii~~~~--~~g~~~~~~~ 184 (640)
..+...+...+||+|.+....+ ... ...+.........++.++++|.. .+-++++++.... .......+.+
T Consensus 75 ~~~~~~a~~~gipvV~~d~~~~---~~~-~~~~v~~~D~~~~g~~~~~~L~~~~~~g~~~i~~i~g~~~~~~~~~r~~g~ 150 (316)
T 1tjy_A 75 CPALKRAMQRGVKILTWDSDTK---PEC-RSYYINQGTPKQLGSMLVEMAAHQVDKEKAKVAFFYSSPTVTDQNQWVKEA 150 (316)
T ss_dssp HHHHHHHHHTTCEEEEESSCCC---GGG-CSEEEESCCHHHHHHHHHHHHHHHHCSSSEEEEEEESCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHCcCEEEEecCCCC---CCC-ceEEEecCCHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCChhHHHHHHHH
Confidence 4445556678999998743221 111 12222245666677888887665 5788999997432 2334556678
Q ss_pred HHHHhhc--CeEEEEeeccCCCCCCChhHHHHHHHHHhcC--CceEEEEecChhhHHHHHHHHHHcCCccCCeEEEEe
Q 006567 185 NDKLAER--RCRISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIAT 258 (640)
Q Consensus 185 ~~~~~~~--g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~vivl~~~~~~~~~il~~a~~~gl~~~~~~~i~~ 258 (640)
++.+++. ++++.....-. .+.......++++... .+++|+. .+...+.-+++++++.| . .+...++.
T Consensus 151 ~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ll~~~~~~~aI~~-~nD~~A~g~~~al~~~G-~-~dv~VvG~ 221 (316)
T 1tjy_A 151 KAKISQEHPGWEIVTTQFGY----NDATKSLQTAEGIIKAYPDLDAIIA-PDANALPAAAQAAENLK-R-NNLAIVGF 221 (316)
T ss_dssp HHHHHHHCTTEEEEEEEECT----TCHHHHHHHHHHHHHHCSSCCEEEE-CSTTHHHHHHHHHHHTT-C-CSCEEEEB
T ss_pred HHHHHhhCCCcEEEEeccCC----CCHHHHHHHHHHHHHhCCCCCEEEE-CCCccHHHHHHHHHHcC-C-CCEEEEEe
Confidence 8888765 56654332212 2244455555655543 3455544 34556777899999988 5 44444443
No 87
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=98.07 E-value=0.00021 Score=70.54 Aligned_cols=204 Identities=10% Similarity=0.018 Sum_probs=123.0
Q ss_pred EEEEEEeecC-CccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcCcEEEEc-CCChHHH
Q 006567 32 VNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIG-PQCSTVA 109 (640)
Q Consensus 32 i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aiiG-p~~s~~~ 109 (640)
-+||++.|.. ..+-.....+++.+.++. |+ +++.+.++..++....+....++.+++.+||. |......
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~-~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~ 73 (309)
T 2fvy_A 3 TRIGVTIYKYDDNFMSVVRKAIEQDAKAA--------PD-VQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAA 73 (309)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHTC--------TT-EEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSGGGH
T ss_pred cEEEEEeccCCcHHHHHHHHHHHHHHHhc--------CC-eEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcchh
Confidence 4799999863 322234445555554442 44 23445566667766666677777788887775 3333333
Q ss_pred HHHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHHh------------cCCcEEEEEEEcC--C
Q 006567 110 HIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSY------------YGWNAVSVIFVDN--E 175 (640)
Q Consensus 110 ~~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~~------------~~w~~v~ii~~~~--~ 175 (640)
......+...++|+|......+...-..++.+..+.......++.++++|.. .|-++++++.... .
T Consensus 74 ~~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~V~~d~~~~g~~~~~~L~~~~~~~~~~~~~g~g~~~i~~i~~~~~~~ 153 (309)
T 2fvy_A 74 GTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHP 153 (309)
T ss_dssp HHHHHHHHTTTCCEEEESSCCCHHHHHTCTTEEEEECCHHHHHHHHHHHHHHHHHHCGGGCTTCSSSEEEEEEECSTTCH
T ss_pred HHHHHHHHHCCCcEEEecCCCCcccccccCccEEEecCHHHHHHHHHHHHHHHHhhcccccccCCCceEEEEEEcCCCCc
Confidence 3344455668999998644321100011235566777888888888887766 6788999987532 2
Q ss_pred CCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcC----CceEEEEecChhhHHHHHHHHHHcC
Q 006567 176 YGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALM----ESRVIVLHVSPSLGFQVFSVAKYLG 247 (640)
Q Consensus 176 ~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~----~~~vivl~~~~~~~~~il~~a~~~g 247 (640)
......+.|++.+++.|+.+.....+... .+.......++++.+. .+++|+. ++...+..+++++++.|
T Consensus 154 ~~~~R~~gf~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~ai~~-~~d~~a~g~~~al~~~g 226 (309)
T 2fvy_A 154 DAEARTTYVIKELNDKGIKTEQLQLDTAM--WDTAQAKDKMDAWLSGPNANKIEVVIA-NNDAMAMGAVEALKAHN 226 (309)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEEECT--TCHHHHHHHHHHHHTSTTGGGCCEEEE-SSHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHhcCCceEEEEEecCC--CCHHHHHHHHHHHHHhCCCCCccEEEE-CCchhHHHHHHHHHHcC
Confidence 34456778889999888765432222111 2234444556665553 4566554 45556778899999987
No 88
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=98.07 E-value=0.00016 Score=72.06 Aligned_cols=209 Identities=8% Similarity=0.021 Sum_probs=123.3
Q ss_pred eeEEEEEEeecCCccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcCcEEEEcCCCh-HH
Q 006567 30 AVVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCS-TV 108 (640)
Q Consensus 30 ~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aiiGp~~s-~~ 108 (640)
.+.+||++.|.+..+-.....+++.+.++ . .|+++. +.++..++....+....++.++|.+||..... ..
T Consensus 5 ~~~~Igvi~~~~~~~~~~~~~gi~~~a~~---~----~g~~l~--i~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~ 75 (325)
T 2x7x_A 5 PHFRIGVAQCSDDSWRHKMNDEILREAMF---Y----NGVSVE--IRSAGDDNSKQAEDVHYFMDEGVDLLIISANEAAP 75 (325)
T ss_dssp -CCEEEEEESCCSHHHHHHHHHHHHHHTT---S----SSCEEE--EEECTTCHHHHHHHHHHHHHTTCSEEEECCSSHHH
T ss_pred CCeEEEEEecCCCHHHHHHHHHHHHHHHH---c----CCcEEE--EeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHHH
Confidence 45789999987322222333444443332 1 145554 45566677666666777788889888764433 22
Q ss_pred HHHHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHHhc--CCcEEEEEEEcCC--CCcccHHHH
Q 006567 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYY--GWNAVSVIFVDNE--YGRNGVSAL 184 (640)
Q Consensus 109 ~~~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~~~--~w~~v~ii~~~~~--~g~~~~~~~ 184 (640)
.......+...++|+|......+ +. +.+..+.+.....++.++++|... |.++++++..... ......+.|
T Consensus 76 ~~~~~~~~~~~~iPvV~~~~~~~---~~--~~~~~V~~D~~~~g~~a~~~L~~~~~G~~~I~~i~~~~~~~~~~~R~~Gf 150 (325)
T 2x7x_A 76 MTPIVEEAYQKGIPVILVDRKIL---SD--KYTAYIGADNYEIGRSVGNYIASSLKGKGNIVELTGLSGSTPAMERHQGF 150 (325)
T ss_dssp HHHHHHHHHHTTCCEEEESSCCS---SS--CSSEEEEECHHHHHHHHHHHHHHHTTTEEEEEEEESCTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCeEEEeCCCCC---Cc--ceeEEEecCHHHHHHHHHHHHHHHcCCCceEEEEECCCCCccHHHHHHHH
Confidence 22334445567999998643322 11 123445667777788888877664 8899999975422 334556788
Q ss_pred HHHHhhc-CeEEEEeeccCCCCCCChhHHHHHHHHHhc--CCceEEEEecChhhHHHHHHHHHHcCCccCCeEEEEe
Q 006567 185 NDKLAER-RCRISYKSGIPPESGVNTGYVMDLLVKVAL--MESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIAT 258 (640)
Q Consensus 185 ~~~~~~~-g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~vivl~~~~~~~~~il~~a~~~gl~~~~~~~i~~ 258 (640)
++.+++. |+.+..... . . .+..+....+.++.. ..+++|+. .+...+..+++++++.|++ .+...++.
T Consensus 151 ~~al~~~pg~~~~~~~~-~-~--~~~~~~~~~~~~ll~~~~~~~aI~~-~nd~~A~g~~~al~~~Gip-~dv~vig~ 221 (325)
T 2x7x_A 151 MAAISKFPDIKLIDKAD-A-A--WERGPAEIEMDSMLRRHPKIDAVYA-HNDRIAPGAYQAAKMAGRE-KEMIFVGI 221 (325)
T ss_dssp HHHHHTCTEEEEEEEEE-C-T--TSHHHHHHHHHHHHHHCSCCCEEEE-SSTTHHHHHHHHHHHTTCT-TSSEEEEE
T ss_pred HHHHHhCCCCEEEeeec-C-C--CCHHHHHHHHHHHHHhCCCCCEEEE-CCCchHHHHHHHHHHcCCC-CCeEEEEE
Confidence 8889888 877653221 1 1 123333444555543 24676664 4445677788999999963 34444443
No 89
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=98.06 E-value=0.0004 Score=68.09 Aligned_cols=199 Identities=9% Similarity=0.098 Sum_probs=121.8
Q ss_pred eEEEEEEeec-CCccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcCcEEEEcCCChHHH
Q 006567 31 VVNVGALFTL-DSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTVA 109 (640)
Q Consensus 31 ~i~IG~l~~~-~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aiiGp~~s~~~ 109 (640)
+.+||++ |. +...-.....+++-++++ .+ . .|.++.+.+.|+..++......+.++.+++|++||.... ...
T Consensus 2 ~~~Igvi-~~~~~p~~~~i~~gi~~~l~~---~g-y-~g~~v~l~~~~~~~~~~~~~~~~~~l~~~~vDgII~~~~-~~~ 74 (295)
T 3lft_A 2 NAKIGVL-QFVSHPSLDLIYKGIQDGLAE---EG-Y-KDDQVKIDFMNSEGDQSKVATMSKQLVANGNDLVVGIAT-PAA 74 (295)
T ss_dssp CEEEEEE-ECSCCHHHHHHHHHHHHHHHH---TT-C-CGGGEEEEEEECTTCHHHHHHHHHHHTTSSCSEEEEESH-HHH
T ss_pred ceEEEEE-EccCChhHHHHHHHHHHHHHH---cC-C-CCCceEEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCc-HHH
Confidence 4679988 53 332222334444444433 33 2 355888888899999988777788888888988886432 222
Q ss_pred HHHHHhhccCCceEEecccCCCCCC---C---CCCCcEEEecCCchHHHHHHHHHHHhc--CCcEEEEEEEcCC-CCccc
Q 006567 110 HIVSYVSNELQVPLLSFGVTDPTLS---S---LQYPFFVRTTQSDSYQMTAVAEMVSYY--GWNAVSVIFVDNE-YGRNG 180 (640)
Q Consensus 110 ~~v~~~~~~~~iP~is~~~~~~~l~---~---~~~~~~~r~~p~~~~~~~al~~ll~~~--~w~~v~ii~~~~~-~g~~~ 180 (640)
..+... ..++|+|.....++... . ....++..+. +..-+...+++|.+. |.+++++|+.... .+...
T Consensus 75 ~~~~~~--~~~iPvV~~~~~~~~~~~~v~~~~~~~~~~~gv~--~~~~~~~~~~~l~~~~pg~~~I~~i~~~~~~~~~~r 150 (295)
T 3lft_A 75 QGLASA--TKDLPVIMAAITDPIGANLVKDLKKPGGNVTGVS--DHNPAQQQVELIKALTPNVKTIGALYSSSEDNSKTQ 150 (295)
T ss_dssp HHHHHH--CSSSCEEEESCSCTTTTTSCSCSSCCCSSEEEEE--ECCCHHHHHHHHHHHCTTCCEEEEEEETTCHHHHHH
T ss_pred HHHHHc--CCCCCEEEEeccChhhcCccccccCCCCcEEEEE--CCccHHHHHHHHHHhCCCCcEEEEEeCCCCcchHHH
Confidence 233322 46999997554333211 0 0112333332 223356666777776 8999999997643 24456
Q ss_pred HHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecChhhHHHHHHHHHHcCC
Q 006567 181 VSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGM 248 (640)
Q Consensus 181 ~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~il~~a~~~gl 248 (640)
.+.+++.+++.|+.+....... ..+....++++.. ++++|++..+ ..+...++++.+.+.
T Consensus 151 ~~g~~~al~~~gi~~~~~~~~~------~~~~~~~~~~l~~-~~dai~~~~D-~~a~g~~~~l~~~~~ 210 (295)
T 3lft_A 151 VEEFKAYAEKAGLTVETFAVPS------TNEIASTVTVMTS-KVDAIWVPID-NTIASGFPTVVSSNQ 210 (295)
T ss_dssp HHHHHHHHHHTTCEEEEEEESS------GGGHHHHHHHHTT-TCSEEEECSC-HHHHHTHHHHHHHTT
T ss_pred HHHHHHHHHHcCCEEEEEecCC------HHHHHHHHHHHHh-cCCEEEECCc-hhHHHHHHHHHHHHH
Confidence 7788999999998876543221 3466677777764 6888877654 344455677777664
No 90
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=98.04 E-value=0.00021 Score=69.76 Aligned_cols=197 Identities=7% Similarity=0.000 Sum_probs=120.1
Q ss_pred EEEEEEeecC-CccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcCcEEEEcC-CChHHH
Q 006567 32 VNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGP-QCSTVA 109 (640)
Q Consensus 32 i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aiiGp-~~s~~~ 109 (640)
.+||++.|.. ..+......+++.+.++. |+++. +.++..++....+....++.+++.+||.. ......
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~ 72 (290)
T 2fn9_A 3 GKMAIVISTLNNPWFVVLAETAKQRAEQL--------GYEAT--IFDSQNDTAKESAHFDAIIAAGYDAIIFNPTDADGS 72 (290)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHT--------TCEEE--EEECTTCHHHHHHHHHHHHHTTCSEEEECCSCTTTT
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHHc--------CCEEE--EeCCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHH
Confidence 4799999863 333345566666666652 55544 45666677666666777778888877763 333322
Q ss_pred HHHHHhhccCCceEEecccCCCCCCCCCCCcEEE-ecCCchHHHHHHHHHHHhc------CCcE--EEEEEEcC--CCCc
Q 006567 110 HIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVR-TTQSDSYQMTAVAEMVSYY------GWNA--VSVIFVDN--EYGR 178 (640)
Q Consensus 110 ~~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r-~~p~~~~~~~al~~ll~~~------~w~~--v~ii~~~~--~~g~ 178 (640)
......+...++|+|......+. . +.... +.......++.++++|... |.++ ++++.... ....
T Consensus 73 ~~~~~~~~~~~iPvV~~~~~~~~---~--~~~~~~V~~D~~~~~~~~~~~L~~~~g~~~~G~r~i~i~~l~g~~~~~~~~ 147 (290)
T 2fn9_A 73 IANVKRAKEAGIPVFCVDRGINA---R--GLAVAQIYSDNYYGGVLAGEYFVKFLKEKYPDAKEIPYAELLGILSAQPTW 147 (290)
T ss_dssp HHHHHHHHHTTCCEEEESSCCSC---S--SSSSEEEEECHHHHHHHHHHHHHHHHHHHCSSCSCEEEEEEECCTTCHHHH
T ss_pred HHHHHHHHHCCCeEEEEecCCCC---C--CceEEEEeCCHHHHHHHHHHHHHHHhcccCCcccceeEEEEEcCCCCchHH
Confidence 22334455679999986543221 1 11222 5667777788888887766 7889 66665432 2344
Q ss_pred ccHHHHHHHHhhc-CeEEEEeeccCCCCCCChhHHHHHHHHHhc--CCceEEEEecChhhHHHHHHHHHHcCC
Q 006567 179 NGVSALNDKLAER-RCRISYKSGIPPESGVNTGYVMDLLVKVAL--MESRVIVLHVSPSLGFQVFSVAKYLGM 248 (640)
Q Consensus 179 ~~~~~~~~~~~~~-g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~vivl~~~~~~~~~il~~a~~~gl 248 (640)
...+.|++.+++. |+.+.....-. .+..+....++++.+ ..+++|+. .+...+..+++++++.|+
T Consensus 148 ~R~~gf~~~l~~~~g~~~~~~~~~~----~~~~~~~~~~~~ll~~~~~~~ai~~-~~d~~a~g~~~al~~~g~ 215 (290)
T 2fn9_A 148 DRSNGFHSVVDQYPEFKMVAQQSAE----FDRDTAYKVTEQILQAHPEIKAIWC-GNDAMALGAMKACEAAGR 215 (290)
T ss_dssp HHHHHHHHHHTTSTTEEEEEEEECT----TCHHHHHHHHHHHHHHCTTCCEEEE-SSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCCCEEEEeccCC----CCHHHHHHHHHHHHHhCCCCcEEEE-CCchHHHHHHHHHHHCCC
Confidence 5677888999888 88764322111 123333445555543 24676664 455567788999999997
No 91
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=98.03 E-value=0.00014 Score=71.05 Aligned_cols=208 Identities=11% Similarity=-0.066 Sum_probs=130.7
Q ss_pred eeEEEEEEeecC-CccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcCcEEEE-cCCChH
Q 006567 30 AVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAII-GPQCST 107 (640)
Q Consensus 30 ~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aii-Gp~~s~ 107 (640)
.+-+||+++|.. ..+-.....+++.+.++. |+++. +.++..++..-.+....++.+++.+|| .|..+.
T Consensus 4 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~ 73 (291)
T 3l49_A 4 EGKTIGITAIGTDHDWDLKAYQAQIAEIERL--------GGTAI--ALDAGRNDQTQVSQIQTLIAQKPDAIIEQLGNLD 73 (291)
T ss_dssp TTCEEEEEESCCSSHHHHHHHHHHHHHHHHT--------TCEEE--EEECTTCHHHHHHHHHHHHHHCCSEEEEESSCHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHHHc--------CCEEE--EEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCChh
Confidence 346899999964 323334556666666553 45554 445666776666677777788888777 455555
Q ss_pred HHHHHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHHh--cCCcEEEEEEEcCC--CCcccHHH
Q 006567 108 VAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSY--YGWNAVSVIFVDNE--YGRNGVSA 183 (640)
Q Consensus 108 ~~~~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~~--~~w~~v~ii~~~~~--~g~~~~~~ 183 (640)
........+...++|+|......+ ..+..+.......++.++++|.. .|-++++++..... ......+.
T Consensus 74 ~~~~~~~~~~~~~iPvV~~~~~~~-------~~~~~V~~D~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~R~~g 146 (291)
T 3l49_A 74 VLNPWLQKINDAGIPLFTVDTATP-------HAINNTTSNNYSIGAELALQMVADLGGKGNVLVFNGFYSVPVCKIRYDQ 146 (291)
T ss_dssp HHHHHHHHHHHTTCCEEEESCCCT-------TCSEEEEECHHHHHHHHHHHHHHHHTTCEEEEEECSCTTSHHHHHHHHH
T ss_pred hhHHHHHHHHHCCCcEEEecCCCC-------CcCceEecChHHHHHHHHHHHHHHcCCCceEEEEeCCCCCchHHHHHHH
Confidence 555566667778999998654321 12345566777788888888877 89999999964322 23345678
Q ss_pred HHHHHhhc-CeEEEEeeccCCCCCCChhHHHHHHHHHhcC-----CceEEEEecChhhHHHHHHHHHHcCCccCCeEEEE
Q 006567 184 LNDKLAER-RCRISYKSGIPPESGVNTGYVMDLLVKVALM-----ESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIA 257 (640)
Q Consensus 184 ~~~~~~~~-g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~-----~~~vivl~~~~~~~~~il~~a~~~gl~~~~~~~i~ 257 (640)
+++.+++. |+++.....+... ..+.......+.++.+. ++++|+ +.+...+..+++++++.|+. +...++
T Consensus 147 f~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~--di~vvg 222 (291)
T 3l49_A 147 MKYVLEAFPDVKIIEPELRDVI-PNTIQSAYSNVTDMLTKYPNEGDVGAIW-ACWDVPMIGATQALQAAGRT--DIRTYG 222 (291)
T ss_dssp HHHHHHTCTTEEECSSCBCCCS-SSHHHHHHHHHHHHHHHCCSTTSCCEEE-ESSHHHHHHHHHHHHHTTCC--SCEEEE
T ss_pred HHHHHHHCCCCEEEeeeccCCC-CCCHHHHHHHHHHHHHhCCCcCCcCEEE-ECCCchHHHHHHHHHHcCCC--CeEEEE
Confidence 88889888 6765433222222 01233334455555443 456664 45566777889999999986 444444
Q ss_pred e
Q 006567 258 T 258 (640)
Q Consensus 258 ~ 258 (640)
.
T Consensus 223 ~ 223 (291)
T 3l49_A 223 V 223 (291)
T ss_dssp E
T ss_pred e
Confidence 3
No 92
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=98.02 E-value=0.00041 Score=68.26 Aligned_cols=210 Identities=9% Similarity=-0.031 Sum_probs=130.0
Q ss_pred EEEEEEeecC-CccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcCcEEEEc-CCChHHH
Q 006567 32 VNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIG-PQCSTVA 109 (640)
Q Consensus 32 i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aiiG-p~~s~~~ 109 (640)
-+||++.|.. ..+-.....+++.+.++. |+++.+. .++..++..-.+....++.+++.+||- |......
T Consensus 5 ~~I~~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~-~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~ 75 (305)
T 3g1w_A 5 ETYMMITFQSGMDYWKRCLKGFEDAAQAL--------NVTVEYR-GAAQYDIQEQITVLEQAIAKNPAGIAISAIDPVEL 75 (305)
T ss_dssp CEEEEEESSTTSTHHHHHHHHHHHHHHHH--------TCEEEEE-ECSSSCHHHHHHHHHHHHHHCCSEEEECCSSTTTT
T ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHHc--------CCEEEEe-CCCcCCHHHHHHHHHHHHHhCCCEEEEcCCCHHHH
Confidence 5789999874 333345566777666663 5556542 356667777677777778888887774 4444333
Q ss_pred HHHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHHhc--CCcEEEEEEEcCC-CCcccHHHHHH
Q 006567 110 HIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYY--GWNAVSVIFVDNE-YGRNGVSALND 186 (640)
Q Consensus 110 ~~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~~~--~w~~v~ii~~~~~-~g~~~~~~~~~ 186 (640)
......+...++|+|......+.. +.+..+.+.....++.++++|... |-++++++..... ......+.+++
T Consensus 76 ~~~~~~~~~~~iPvV~~~~~~~~~-----~~~~~V~~d~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~R~~gf~~ 150 (305)
T 3g1w_A 76 TDTINKAVDAGIPIVLFDSGAPDS-----HAHSFLGTNNYNAGMNAAYKMAELLDGEGEVAVITLPNQLNHQERTTGFKE 150 (305)
T ss_dssp HHHHHHHHHTTCCEEEESSCCTTS-----CCSCEEECCHHHHHHHHHHHHHHHTTTCEEEEEEECTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCcEEEECCCCCCC-----ceeEEECcCHHHHHHHHHHHHHHHhCCCcEEEEEeCCCcccHHHHHHHHHH
Confidence 334455566799999865433211 123445677888888889888877 9999999985322 23344567888
Q ss_pred HHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcC--CceEEEEecChhhHHHHHHHHHHcCCccCCeEEEEeC
Q 006567 187 KLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATD 259 (640)
Q Consensus 187 ~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~vivl~~~~~~~~~il~~a~~~gl~~~~~~~i~~~ 259 (640)
.+++.|..+.....+... .+.......+.++.+. ++++|+ +.+...+..+++++++.|+. .+...++.+
T Consensus 151 ~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~-~di~vig~d 221 (305)
T 3g1w_A 151 TLEAEFPAIEVIAVEDGR--GDSLHSRRVAHQLLEDYPNLAGIF-ATEANGGVGVGDAVRLESRA-GEIQIISFD 221 (305)
T ss_dssp HHHHHCTTEEEEEEEECT--TCHHHHHHHHHHHHHHCTTEEEEE-ESSHHHHHHHHHHHHHTTCT-TTSEEEEES
T ss_pred HHHhhCCCCEEEEEecCC--CCHHHHHHHHHHHHHhCCCceEEE-ECCCcchhhHHHHHHhcCCC-CCeEEEEeC
Confidence 888776544332222211 2344445555555543 344443 45556677899999999987 455555544
No 93
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=98.01 E-value=0.0003 Score=69.19 Aligned_cols=204 Identities=12% Similarity=0.140 Sum_probs=125.5
Q ss_pred CCeeEEEEEEeecCCccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcCcEEEEcCCChH
Q 006567 28 RPAVVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCST 107 (640)
Q Consensus 28 ~~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aiiGp~~s~ 107 (640)
..++++||++--.....-...+.|++- .+++.|.. .|.++++.+.|.++|+......+.+++++++++|++. .+.
T Consensus 5 ~~~~~~igi~q~~~hp~ld~~~~G~~~---~L~~~G~~-~g~nv~~~~~~a~gd~~~~~~~~~~l~~~~~DlIiai-~t~ 79 (302)
T 3lkv_A 5 MAKTAKVAVSQIVEHPALDATRQGLLD---GLKAKGYE-EGKNLEFDYKTAQGNPAIAVQIARQFVGENPDVLVGI-ATP 79 (302)
T ss_dssp --CCEEEEEEESCCCHHHHHHHHHHHH---HHHHTTCC-BTTTEEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEE-SHH
T ss_pred hcCCceEEEEEeecChhHHHHHHHHHH---HHHhhCcc-cCCcEEEEEEeCCCCHHHHHHHHHHHHhcCCcEEEEc-CCH
Confidence 457899999865542222344555544 45555544 5788999999999999999999999999999999863 344
Q ss_pred HHHHHHHhhccCCceEEecccCCCCCC---C---CCCCcEEEecCCchHHHHHHHHHHHhc--CCcEEEEEEEcCCC-Cc
Q 006567 108 VAHIVSYVSNELQVPLLSFGVTDPTLS---S---LQYPFFVRTTQSDSYQMTAVAEMVSYY--GWNAVSVIFVDNEY-GR 178 (640)
Q Consensus 108 ~~~~v~~~~~~~~iP~is~~~~~~~l~---~---~~~~~~~r~~p~~~~~~~al~~ll~~~--~w~~v~ii~~~~~~-g~ 178 (640)
++.++... ..++|+|-.+.++|.-. + ..-+++.-+. +..-....++++++. +.++++++|+..+. ..
T Consensus 80 aa~a~~~~--~~~iPVVf~~v~dp~~~~l~~~~~~~g~nvtGv~--~~~~~~~~l~l~~~l~P~~k~vgvi~~~~~~~s~ 155 (302)
T 3lkv_A 80 TAQALVSA--TKTIPIVFTAVTDPVGAKLVKQLEQPGKNVTGLS--DLSPVEQHVELIKEILPNVKSIGVVYNPGEANAV 155 (302)
T ss_dssp HHHHHHHH--CSSSCEEEEEESCTTTTTSCSCSSSCCSSEEEEE--CCCCHHHHHHHHHHHSTTCCEEEEEECTTCHHHH
T ss_pred HHHHHHhh--cCCCCeEEEecCCcchhhhcccccCCCCcEEEEE--CCcCHHHHHHHHHHhCCCCCEEEEEeCCCcccHH
Confidence 45544443 45799986555555322 1 1113343332 111134455666553 78999999965432 33
Q ss_pred ccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecChhhH---HHHHHHHHHcC
Q 006567 179 NGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLG---FQVFSVAKYLG 247 (640)
Q Consensus 179 ~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~---~~il~~a~~~g 247 (640)
...+.+++.+++.|+++...... +..+....+..+. .+.+++++..+.... ..+...+.+.+
T Consensus 156 ~~~~~~~~~~~~~g~~~v~~~~~------~~~~~~~~~~~l~-~~~d~i~~~~d~~~~~~~~~i~~~~~~~~ 220 (302)
T 3lkv_A 156 SLMELLKLSAAKHGIKLVEATAL------KSADVQSATQAIA-EKSDVIYALIDNTVASAIEGMIVAANQAK 220 (302)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECS------SGGGHHHHHHHHH-TTCSEEEECSCHHHHHTHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCEEEEEecC------ChHHHHHHHHhcc-CCeeEEEEeCCcchhhHHHHHHHHHhhcC
Confidence 45667888888899988654322 2556666666654 457888877654332 23344444444
No 94
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=98.01 E-value=0.00033 Score=68.21 Aligned_cols=199 Identities=12% Similarity=0.057 Sum_probs=120.7
Q ss_pred eeEEEEEEeecC-CccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcCcEEEEcCCChHH
Q 006567 30 AVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTV 108 (640)
Q Consensus 30 ~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aiiGp~~s~~ 108 (640)
.+.+||++.|.. ..+......+++.+.++ .|+++.+ .++..++....+....++.+++.+||.......
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 76 (285)
T 3c3k_A 7 KTGMLLVMVSNIANPFCAAVVKGIEKTAEK--------NGYRILL--CNTESDLARSRSCLTLLSGKMVDGVITMDALSE 76 (285)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHH--------TTCEEEE--EECTTCHHHHHHHTHHHHTTCCSEEEECCCGGG
T ss_pred CCCEEEEEeCCCCCchHHHHHHHHHHHHHH--------cCCEEEE--EeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 456899999963 33333445566555554 2566544 445556655555566677778988876433222
Q ss_pred HHHHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCC--CCcccHHHHHH
Q 006567 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNE--YGRNGVSALND 186 (640)
Q Consensus 109 ~~~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~~~~--~g~~~~~~~~~ 186 (640)
...+..+ . .++|+|......+ + +.+..+.......+..++++|...|.++++++..... ......+.|++
T Consensus 77 ~~~~~~l-~-~~iPvV~~~~~~~---~---~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~~ 148 (285)
T 3c3k_A 77 LPELQNI-I-GAFPWVQCAEYDP---L---STVSSVSIDDVAASEYVVDQLVKSGKKRIALINHDLAYQYAQHRESGYLN 148 (285)
T ss_dssp HHHHHHH-H-TTSSEEEESSCCT---T---SSSCEEECCHHHHHHHHHHHHHHTTCCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred hHHHHHH-h-cCCCEEEEccccC---C---CCCCEEEEChHHHHHHHHHHHHHcCCCeEEEEeCCCccccHHHHHHHHHH
Confidence 2333333 4 8999998644322 1 1223455667777788888888889999999985432 33455678888
Q ss_pred HHhhcCeEEEEeeccCCCCCCChhHHHHHHHH--HhcC--CceEEEEecChhhHHHHHHHHHHcCCccCC
Q 006567 187 KLAERRCRISYKSGIPPESGVNTGYVMDLLVK--VALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNG 252 (640)
Q Consensus 187 ~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~--l~~~--~~~vivl~~~~~~~~~il~~a~~~gl~~~~ 252 (640)
.+++.|+.+. ...-.. +..+....+++ +.+. .+++|+. .+...+..+++++++.|+.-++
T Consensus 149 ~l~~~g~~~~-~~~~~~----~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~A~g~~~al~~~g~~vP~ 212 (285)
T 3c3k_A 149 RLKFHGLDYS-RISYAE----NLDYMAGKLATFSLLKSAVKPDAIFA-ISDVLAAGAIQALTESGLSIPQ 212 (285)
T ss_dssp HHHHHTCCCC-EEEECS----SSSHHHHHHHHHHHHSSSSCCSEEEE-SSHHHHHHHHHHHHHTTCCTTT
T ss_pred HHHHcCCCce-EeecCC----ChHHHHHHHHHHHHHcCCCCCeEEEE-CCHHHHHHHHHHHHHcCCCCCC
Confidence 8888887543 111111 12333445555 5443 4666654 4455677889999999986443
No 95
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=98.00 E-value=0.00036 Score=68.17 Aligned_cols=201 Identities=10% Similarity=-0.002 Sum_probs=125.2
Q ss_pred CeeEEEEEEeecC-CccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcCcEEEEc-CCCh
Q 006567 29 PAVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIG-PQCS 106 (640)
Q Consensus 29 ~~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aiiG-p~~s 106 (640)
..+.+||+++|.. ..+-.....+++.+.++. |+++. +.++..++....+....++.+++.+||- |...
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~ 75 (293)
T 3l6u_A 6 PKRNIVGFTIVNDKHEFAQRLINAFKAEAKAN--------KYEAL--VATSQNSRISEREQILEFVHLKVDAIFITTLDD 75 (293)
T ss_dssp ---CEEEEEESCSCSHHHHHHHHHHHHHHHHT--------TCEEE--EEECSSCHHHHHHHHHHHHHTTCSEEEEECSCT
T ss_pred CCCcEEEEEEecCCcHHHHHHHHHHHHHHHHc--------CCEEE--EECCCCCHHHHHHHHHHHHHcCCCEEEEecCCh
Confidence 3467899999964 323334455665555552 55554 4455667766667777788888877664 3333
Q ss_pred HHHHHHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHHh-c-CCc-----EEEEEEEcC--CCC
Q 006567 107 TVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSY-Y-GWN-----AVSVIFVDN--EYG 177 (640)
Q Consensus 107 ~~~~~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~~-~-~w~-----~v~ii~~~~--~~g 177 (640)
.........+...++|+|......+.. +.+..+.......+..++++|.. + |-+ +++++.... ...
T Consensus 76 ~~~~~~~~~~~~~~iPvV~~~~~~~~~-----~~~~~V~~D~~~~g~~~~~~l~~~~~g~~~~~~~~i~~i~g~~~~~~~ 150 (293)
T 3l6u_A 76 VYIGSAIEEAKKAGIPVFAIDRMIRSD-----AVVSSITSNNQMIGEQLASYIKNELIKQTGRSTGRIVEITGTANVYTT 150 (293)
T ss_dssp TTTHHHHHHHHHTTCCEEEESSCCCCT-----TCSEEEEECHHHHHHHHHHHHHHHHHHHHSCSCEEEEEEECSTTCHHH
T ss_pred HHHHHHHHHHHHcCCCEEEecCCCCCC-----cceeEEecCHHHHHHHHHHHHHHHhccCCCCCCceEEEEECCCCCchH
Confidence 333344455666799999865433211 23345667778888888887766 5 766 999997432 233
Q ss_pred cccHHHHHHHHhhc-CeEEEEeeccCCCCCCChhHHHHHHHHHhcC--CceEEEEecChhhHHHHHHHHHHcCCc
Q 006567 178 RNGVSALNDKLAER-RCRISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMM 249 (640)
Q Consensus 178 ~~~~~~~~~~~~~~-g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~vivl~~~~~~~~~il~~a~~~gl~ 249 (640)
....+.+++.+++. |+.+.....-. .+..+....+.++.+. .+++|+ +.+...+..+++++++.|+.
T Consensus 151 ~~R~~gf~~~l~~~~g~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~ 220 (293)
T 3l6u_A 151 NERHRGFLKGIENEPTLSIVDSVSGN----YDPVTSERVMRQVIDSGIPFDAVY-CHNDDIAMGVLEALKKAKIS 220 (293)
T ss_dssp HHHHHHHHHHHTTCTTEEEEEEEECT----TCHHHHHHHHHHHHHTTCCCSEEE-ESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhCCCcEEeeeccCC----CCHHHHHHHHHHHHHhCCCCCEEE-ECCchHHHHHHHHHHhCCCC
Confidence 45667889999988 88876543222 2244555556666554 345544 44556677899999999975
No 96
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=97.98 E-value=0.00019 Score=70.15 Aligned_cols=211 Identities=9% Similarity=0.017 Sum_probs=125.9
Q ss_pred CCCeeEEEEEEeecC-CccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcCcEEEEcCCC
Q 006567 27 ARPAVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQC 105 (640)
Q Consensus 27 ~~~~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aiiGp~~ 105 (640)
....+.+||+++|.. ..+-.....+++.+.++ .|+++.+ .++..++....+....++.+++.+||-...
T Consensus 12 ~~~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 81 (289)
T 2fep_A 12 SSKKTTTVGVIIPDISSIFYSELARGIEDIATM--------YKYNIIL--SNSDQNMEKELHLLNTMLGKQVDGIVFMGG 81 (289)
T ss_dssp ----CCEEEEEESCTTSHHHHHHHHHHHHHHHH--------TTCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred ccCCCCeEEEEeCCCCCchHHHHHHHHHHHHHH--------cCCEEEE--EeCCCCHHHHHHHHHHHHhCCCCEEEEecC
Confidence 344567899999863 33333445566555554 2565544 455566666566666777788887775322
Q ss_pred hHHHHHHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcC---CCCcccHH
Q 006567 106 STVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDN---EYGRNGVS 182 (640)
Q Consensus 106 s~~~~~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~~~---~~g~~~~~ 182 (640)
......+. .+...++|+|......+ + +.+..+.......++.++++|...|.++++++.... .......+
T Consensus 82 ~~~~~~~~-~l~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~ 154 (289)
T 2fep_A 82 NITDEHVA-EFKRSPVPIVLAASVEE---Q---EETPSVAIDYEQAIYDAVKLLVDKGHTDIAFVSGPMAEPINRSKKLQ 154 (289)
T ss_dssp CCCHHHHH-HHHHSSSCEEEESCCCT---T---CCSCEEECCHHHHHHHHHHHHHHTTCSSEEEEESCTTSHHHHTTHHH
T ss_pred CCCHHHHH-HHHhcCCCEEEEccccC---C---CCCCEEEECcHHHHHHHHHHHHHCCCCeEEEEeCCccccccHHHHHH
Confidence 21122233 33467999998644322 1 122345567777788888988888999999998543 23456678
Q ss_pred HHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcC--CceEEEEecChhhHHHHHHHHHHcCCccC-CeEEEE
Q 006567 183 ALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGN-GYVWIA 257 (640)
Q Consensus 183 ~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~vivl~~~~~~~~~il~~a~~~gl~~~-~~~~i~ 257 (640)
.|++.+++.|+.+.....+... .+..+-...++++.+. .+++|+. .+...+..+++++++.|+.-+ +...++
T Consensus 155 Gf~~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~A~g~~~al~~~G~~vP~di~vvg 229 (289)
T 2fep_A 155 GYKRALEEANLPFNEQFVAEGD--YTYDSGLEALQHLMSLDKKPTAILS-ATDEMALGIIHAAQDQGLSIPEDLDIIG 229 (289)
T ss_dssp HHHHHHHHTTCCCCGGGEEECC--SCHHHHHHHHHHHTTSSSCCSEEEE-SSHHHHHHHHHHHHHTTCCTTTTCEEEE
T ss_pred HHHHHHHHcCCCCChheEeeCC--CCHHHHHHHHHHHHcCCCCCCEEEE-CCHHHHHHHHHHHHHcCCCCCCCeEEEE
Confidence 8999999888754311111111 1234445566666554 4566554 455567788999999998643 334444
No 97
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=97.98 E-value=0.00026 Score=68.28 Aligned_cols=207 Identities=12% Similarity=0.016 Sum_probs=127.4
Q ss_pred EEEEEEeecC-CccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcCcEEEEcCCChHHHH
Q 006567 32 VNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTVAH 110 (640)
Q Consensus 32 i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aiiGp~~s~~~~ 110 (640)
-+||+++|.. ..+-.....+++.+.++. |+++.+ .++..++..-.+....++.+++.+||-........
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~ 72 (272)
T 3o74_A 3 RTLGFILPDLENPSYARIAKQLEQGARAR--------GYQLLI--ASSDDQPDSERQLQQLFRARRCDALFVASCLPPED 72 (272)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHT--------TCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEECCCCCSSC
T ss_pred eEEEEEeCCCcChhHHHHHHHHHHHHHHC--------CCEEEE--EeCCCCHHHHHHHHHHHHHcCCCEEEEecCccccH
Confidence 4799999974 223334455565555552 565554 44555666666666677777888766532221112
Q ss_pred HHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCC--CCcccHHHHHHHH
Q 006567 111 IVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNE--YGRNGVSALNDKL 188 (640)
Q Consensus 111 ~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~~~~--~g~~~~~~~~~~~ 188 (640)
.....+...++|+|......+ + +.+-.+.......++.++++|...|.++++++..... ......+.+++.+
T Consensus 73 ~~~~~~~~~~iPvV~~~~~~~---~---~~~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l 146 (272)
T 3o74_A 73 DSYRELQDKGLPVIAIDRRLD---P---AHFCSVISDDRDASRQLAASLLSSAPRSIALIGARPELSVSQARAGGFDEAL 146 (272)
T ss_dssp CHHHHHHHTTCCEEEESSCCC---T---TTCEEEEECHHHHHHHHHHHHHTTCCSEEEEEEECTTSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCEEEEccCCC---c---cccCEEEEchHHHHHHHHHHHHHCCCcEEEEEecCCCCccHHHHHHHHHHHH
Confidence 234455667999997643322 1 1223456677788888889988889999999986432 3445677889999
Q ss_pred hhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcC---CceEEEEecChhhHHHHHHHHHHcCCccCCeEEEEeC
Q 006567 189 AERRCRISYKSGIPPESGVNTGYVMDLLVKVALM---ESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATD 259 (640)
Q Consensus 189 ~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~vivl~~~~~~~~~il~~a~~~gl~~~~~~~i~~~ 259 (640)
++.|+.+.....-.. +..+....++++.+. .+++|+. .+...+..+++++++.|+...+...++.+
T Consensus 147 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~ai~~-~~d~~a~g~~~al~~~g~vp~di~vvg~d 215 (272)
T 3o74_A 147 QGYTGEVRRYQGEAF----SRECGQRLMQQLIDDLGGLPDALVT-TSYVLLQGVFDTLQARPVDSRQLQLGTFG 215 (272)
T ss_dssp TTCCSEEEEEEESSS----SHHHHHHHHHHHHHHHTSCCSEEEE-SSHHHHHHHHHHHHTSCGGGCCCEEEEES
T ss_pred HHcCCChheeecCCC----CHHHHHHHHHHHHhcCCCCCcEEEE-eCchHHHHHHHHHHHcCCCccceEEEEeC
Confidence 999987654332221 244444445554432 3666654 45566778999999999732344455543
No 98
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=97.97 E-value=0.00078 Score=65.45 Aligned_cols=204 Identities=10% Similarity=0.110 Sum_probs=120.6
Q ss_pred EEEEEeecC-CccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcCcEEEEc-CCChHHHH
Q 006567 33 NVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIG-PQCSTVAH 110 (640)
Q Consensus 33 ~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aiiG-p~~s~~~~ 110 (640)
+||++.|.. ..+-.....+++.+.++. |+++. +.++..++..-.+....++.++|.+||- |.......
T Consensus 3 ~Igvi~~~~~~~f~~~~~~gi~~~~~~~--------g~~~~--~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~ 72 (283)
T 2ioy_A 3 TIGLVISTLNNPFFVTLKNGAEEKAKEL--------GYKII--VEDSQNDSSKELSNVEDLIQQKVDVLLINPVDSDAVV 72 (283)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHHH--------TCEEE--EEECTTCHHHHHHHHHHHHHTTCSEEEECCSSTTTTH
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHHHhc--------CcEEE--EecCCCCHHHHHHHHHHHHHcCCCEEEEeCCchhhhH
Confidence 689999863 333334566666666553 45543 4456667666566677777888887664 44333222
Q ss_pred HHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHHhc-C-CcEEEEEEEcCC--CCcccHHHHHH
Q 006567 111 IVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYY-G-WNAVSVIFVDNE--YGRNGVSALND 186 (640)
Q Consensus 111 ~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~~~-~-w~~v~ii~~~~~--~g~~~~~~~~~ 186 (640)
.....+...++|+|......+ +. +....+.......++.++++|... | -++++++..... ......+.+++
T Consensus 73 ~~~~~~~~~~iPvV~~~~~~~---~~--~~~~~V~~D~~~~g~~a~~~L~~~~gg~~~I~~i~g~~~~~~~~~R~~Gf~~ 147 (283)
T 2ioy_A 73 TAIKEANSKNIPVITIDRSAN---GG--DVVCHIASDNVKGGEMAAEFIAKALKGKGNVVELEGIPGASAARDRGKGFDE 147 (283)
T ss_dssp HHHHHHHHTTCCEEEESSCCS---SS--CCSEEEEECHHHHHHHHHHHHHHHTTTCEEEEEEECCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCeEEEecCCCC---Cc--ceeEEEecChHHHHHHHHHHHHHHcCCCceEEEEECCCCCccHHHHHHHHHH
Confidence 233445667999998643221 11 122334566667778888877665 5 899999975432 23345678888
Q ss_pred HHhhc-CeEEEEeeccCCCCCCChhHHHHHHHHHhcC--CceEEEEecChhhHHHHHHHHHHcCCccCCeEEEEe
Q 006567 187 KLAER-RCRISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIAT 258 (640)
Q Consensus 187 ~~~~~-g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~vivl~~~~~~~~~il~~a~~~gl~~~~~~~i~~ 258 (640)
.+++. |+.+.....-. .+..+-...++++.+. .+++| ++++...+.-+++++++.|+ .+...++-
T Consensus 148 al~~~~~~~~~~~~~~~----~~~~~~~~~~~~ll~~~~~~~ai-~~~nD~~A~g~~~al~~~G~--~di~viG~ 215 (283)
T 2ioy_A 148 AIAKYPDIKIVAKQAAD----FDRSKGLSVMENILQAQPKIDAV-FAQNDEMALGAIKAIEAANR--QGIIVVGF 215 (283)
T ss_dssp HHTTCTTEEEEEEEECT----TCHHHHHHHHHHHHHHCSCCCEE-EESSHHHHHHHHHHHHHTTC--CCCEEEEE
T ss_pred HHHhCCCCEEEeeccCC----CCHHHHHHHHHHHHHhCCCccEE-EECCchHHHHHHHHHHHCCC--CCcEEEEe
Confidence 99887 87764322111 1233444455555443 34554 34455567788999999997 34444443
No 99
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=97.96 E-value=5.6e-05 Score=73.31 Aligned_cols=202 Identities=9% Similarity=-0.014 Sum_probs=111.5
Q ss_pred EEEEEeecC-CccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcCcEEEEcCCChHHHHH
Q 006567 33 NVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTVAHI 111 (640)
Q Consensus 33 ~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aiiGp~~s~~~~~ 111 (640)
+||+++|.. ..+-.....+++.+.++. |+++. +.++..++....+....+..+++.+||........ .
T Consensus 1 ~Igvi~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-~ 69 (276)
T 2h0a_A 1 TVSVLLPFVATEFYRRLVEGIEGVLLEQ--------RYDLA--LFPILSLARLKRYLENTTLAYLTDGLILASYDLTE-R 69 (276)
T ss_dssp CEEEEECCSCCHHHHHHHHHHHHHHGGG--------TCEEE--ECCCCSCCCCC---------CCCSEEEEESCCCC---
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHC--------CCEEE--EEeCCCchhhHHHHHHHHHhCCCCEEEEecCCCCH-H
Confidence 489999853 222223344444444432 45544 34444444333344555666788877653222112 2
Q ss_pred HHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcC-C-----CCc-ccHHHH
Q 006567 112 VSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDN-E-----YGR-NGVSAL 184 (640)
Q Consensus 112 v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~~~-~-----~g~-~~~~~~ 184 (640)
....+...++|+|......+ + +..+.......++.++++|...|.++++++.... . ... ...+.+
T Consensus 70 ~~~~~~~~~iPvV~~~~~~~-------~-~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~~~~~~R~~gf 141 (276)
T 2h0a_A 70 FEEGRLPTERPVVLVDAQNP-------R-YDSVYLDNRLGGRLAGAYLARFPGPIFAIAVEEEPDRAFRRTVFAERMAGF 141 (276)
T ss_dssp ----CCSCSSCEEEESSCCT-------T-SEEEEECSHHHHHHHHHHHTTSSSCEEEEEECCSCCC---CCHHHHHHHHH
T ss_pred HHHHHhhcCCCEEEEeccCC-------C-CCEEEEccHHHHHHHHHHHHHcCCCeEEEEecCcccccccchhHHHHHHHH
Confidence 33445668999998643321 1 3455667788888889998888999999998643 2 334 567788
Q ss_pred HHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCC--ceEEEEecChhhHHHHHHHHHHcCCccCCeEEE
Q 006567 185 NDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALME--SRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWI 256 (640)
Q Consensus 185 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~vivl~~~~~~~~~il~~a~~~gl~~~~~~~i 256 (640)
++.+++.|+.+.....+... .+..+-...++++.+.+ +++|+ +++...+..+++++++.|+.-++-+.+
T Consensus 142 ~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~v 212 (276)
T 2h0a_A 142 QEALKEAGRPFSPDRLYITR--HSQEGGRLALRHFLEKASPPLNVF-AGADQVALGVLEEAVRLGLTPGRDVRV 212 (276)
T ss_dssp HHHHHHTTCCCCGGGEEEEC--SSHHHHHHHHHHHHTTCCSSEEEE-CSSHHHHHHHHHHHHTTSCTTTTSEEE
T ss_pred HHHHHHcCCCCChHHeeecC--CChHHHHHHHHHHHhCCCCCCEEE-ECCcHHHHHHHHHHHHcCCCCCCCeEE
Confidence 89999888754311011101 12344445566665543 66655 555666778999999999865443433
No 100
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=97.95 E-value=0.00031 Score=68.72 Aligned_cols=209 Identities=12% Similarity=0.005 Sum_probs=125.8
Q ss_pred eeEEEEEEeecC-CccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcCcEEEEcCCChHH
Q 006567 30 AVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTV 108 (640)
Q Consensus 30 ~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aiiGp~~s~~ 108 (640)
.+-+||++.|.. ..+-.....+++.+.++ .|+++.+ .++..++....+....++.+++.+||.......
T Consensus 19 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~ 88 (293)
T 2iks_A 19 RTRSIGLVIPDLENTSYTRIANYLERQARQ--------RGYQLLI--ACSEDQPDNEMRCIEHLLQRQVDAIIVSTSLPP 88 (293)
T ss_dssp CCCEEEEEESCSCSHHHHHHHHHHHHHHHH--------TTCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEECCSSCT
T ss_pred CCcEEEEEeCCCcCcHHHHHHHHHHHHHHH--------CCCEEEE--EcCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCC
Confidence 457899999853 32223445555555554 2555543 455556665555666777788887775332221
Q ss_pred HHHHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCC--CCcccHHHHHH
Q 006567 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNE--YGRNGVSALND 186 (640)
Q Consensus 109 ~~~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~~~~--~g~~~~~~~~~ 186 (640)
...+...+...++|+|......+ + +.+..+.......+..++++|...|.++++++..... ......+.|++
T Consensus 89 ~~~~~~~~~~~~iPvV~~~~~~~---~---~~~~~V~~d~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~ 162 (293)
T 2iks_A 89 EHPFYQRWANDPFPIVALDRALD---R---EHFTSVVGADQDDAEMLAEELRKFPAETVLYLGALPELSVSFLREQGFRT 162 (293)
T ss_dssp TCHHHHTTTTSSSCEEEEESCCC---T---TTCEEEEECHHHHHHHHHHHHHTSCCSSEEEEEECTTSHHHHHHHHHHHH
T ss_pred cHHHHHHHHhCCCCEEEECCccC---c---CCCCEEEecCHHHHHHHHHHHHHCCCCEEEEEecCcccccHHHHHHHHHH
Confidence 12233455668999998654322 1 1233455677777888888888889999999986432 33456678889
Q ss_pred HHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCC--ceEEEEecChhhHHHHHHHHHHcCCccC-CeEEEEeC
Q 006567 187 KLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALME--SRVIVLHVSPSLGFQVFSVAKYLGMMGN-GYVWIATD 259 (640)
Q Consensus 187 ~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~vivl~~~~~~~~~il~~a~~~gl~~~-~~~~i~~~ 259 (640)
.+++.|+.......-. .+..+-...++++.+.+ +++|+. .+...+..+++++++.|+.-+ +...++.+
T Consensus 163 ~l~~~g~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~di~vvg~d 233 (293)
T 2iks_A 163 AWKDDPREVHFLYANS----YEREAAAQLFEKWLETHPMPQALFT-TSFALLQGVMDVTLRRDGKLPSDLAIATFG 233 (293)
T ss_dssp HHTTCCCCEEEEEESS----SCHHHHHHHHHHHTTTSCCCSEEEE-SSHHHHHHHHHHHHHHHSSCCSSCEEEEES
T ss_pred HHHHcCCCccEEEcCC----CChhhHHHHHHHHHhcCCCCCEEEE-CChHHHHHHHHHHHHcCCCCCCceEEEEEC
Confidence 9998886433221111 12344445566665543 566554 445567788999999887643 34444433
No 101
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=97.92 E-value=0.00088 Score=67.37 Aligned_cols=214 Identities=12% Similarity=0.013 Sum_probs=131.6
Q ss_pred eEEEEEEeecCC--ccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHh--cCcEEEEcCCCh
Q 006567 31 VVNVGALFTLDS--TIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFME--TDIVAIIGPQCS 106 (640)
Q Consensus 31 ~i~IG~l~~~~~--~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~--~~v~aiiGp~~s 106 (640)
..+||++.|... .+-.....+++.+.++. |+++.+. +...++..-.+.+.+++. +++.+||-....
T Consensus 3 ~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~--------g~~~~~~--~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~~~ 72 (350)
T 3h75_A 3 LTSVVFLNPGNSTETFWVSYSQFMQAAARDL--------GLDLRIL--YAERDPQNTLQQARELFQGRDKPDYLMLVNEQ 72 (350)
T ss_dssp CCEEEEEECSCTTCHHHHHHHHHHHHHHHHH--------TCEEEEE--ECTTCHHHHHHHHHHHHHSSSCCSEEEEECCS
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHHHHHHc--------CCeEEEE--ECCCCHHHHHHHHHHHHhcCCCCCEEEEeCch
Confidence 358999999753 33345566777666664 4555544 666677776777888888 588876653333
Q ss_pred HHHHHHHHhhccCCceEEecccCCCCCCC-------CCCC-cEEEecCCchHHHHHHHHHHHhcC------C-cEEEEEE
Q 006567 107 TVAHIVSYVSNELQVPLLSFGVTDPTLSS-------LQYP-FFVRTTQSDSYQMTAVAEMVSYYG------W-NAVSVIF 171 (640)
Q Consensus 107 ~~~~~v~~~~~~~~iP~is~~~~~~~l~~-------~~~~-~~~r~~p~~~~~~~al~~ll~~~~------w-~~v~ii~ 171 (640)
.....+...+...+||+|......+.... ..|+ ++..+.+.....++.++++|...+ - ++++++.
T Consensus 73 ~~~~~~~~~~~~~giPvV~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~g~~~~~g~~~~i~~i~ 152 (350)
T 3h75_A 73 YVAPQILRLSQGSGIKLFIVNSPLTLDQRELIGQSRQNYSDWIGSMVGDDEEAGYRMLKELLHKLGPVPAGHGIELLAFS 152 (350)
T ss_dssp SHHHHHHHHHTTSCCEEEEEESCCCTTTC------------CEEEEECCHHHHHHHHHHHHHHHHCCCCSSCCEEEEEEE
T ss_pred hhHHHHHHHHHhCCCcEEEEcCCCChHHHhhhcCCchhccceeeeecCChHHHHHHHHHHHHHHhhhhcCCCCceEEEEe
Confidence 34455566777889999987554432210 1111 256667788888888888877665 4 7899887
Q ss_pred EcC--CCCcccHHHHHHHHhhcCe-EEEEeeccCCCCCCChhHHHHHHHHHhcCCceEE-EEecChhhHHHHHHHHHHcC
Q 006567 172 VDN--EYGRNGVSALNDKLAERRC-RISYKSGIPPESGVNTGYVMDLLVKVALMESRVI-VLHVSPSLGFQVFSVAKYLG 247 (640)
Q Consensus 172 ~~~--~~g~~~~~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vi-vl~~~~~~~~~il~~a~~~g 247 (640)
... .......+.+++.+++.|. .+... +... .+.......+.++.+..+++- |++++...+..+++++++.|
T Consensus 153 g~~~~~~~~~R~~Gf~~~l~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~L~~~~~~~aI~~~~d~~a~g~~~al~~~G 228 (350)
T 3h75_A 153 GLKVTPAAQLRERGLRRALAEHPQVHLRQL--VYGE--WNRERAYRQAQQLLKRYPKTQLVWSANDEMALGAMQAARELG 228 (350)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHCTTEEEEEE--EECT--TCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCeEEEEE--eeCC--CcHHHHHHHHHHHHHhCCCcCEEEECChHHHHHHHHHHHHcC
Confidence 432 2334456788899988885 22222 2211 224444555565554434332 33455566778999999999
Q ss_pred CccCC-eEEEEe
Q 006567 248 MMGNG-YVWIAT 258 (640)
Q Consensus 248 l~~~~-~~~i~~ 258 (640)
+.-++ ...++.
T Consensus 229 ~~vP~di~vvg~ 240 (350)
T 3h75_A 229 RKPGTDLLFSGV 240 (350)
T ss_dssp CCBTTTBEEEEE
T ss_pred CCCCCCeEEEec
Confidence 86443 444443
No 102
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=97.91 E-value=0.00051 Score=67.65 Aligned_cols=210 Identities=8% Similarity=-0.005 Sum_probs=123.3
Q ss_pred eEEEEEEeecC-CccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcCcEEEEcCCCh-HH
Q 006567 31 VVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCS-TV 108 (640)
Q Consensus 31 ~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aiiGp~~s-~~ 108 (640)
+++||++.|.. ..+......+++.+.++. |+++. +.++..++....+....++.++|.+||..... ..
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~l~--~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~ 71 (306)
T 2vk2_A 2 PLTVGFSQVGSESGWRAAETNVAKSEAEKR--------GITLK--IADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATG 71 (306)
T ss_dssp CCEEEEEECCCCSHHHHHHHHHHHHHHHHH--------TCEEE--EEECTTCHHHHHHHHHHHHHHTCSEEEECCSSSSS
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHHc--------CCEEE--EeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhh
Confidence 47899999974 333344556666666553 45544 44556677666666667777788877753332 21
Q ss_pred HHHHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHHhcC---CcEEEEEEEcCC--CCcccHHH
Q 006567 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYG---WNAVSVIFVDNE--YGRNGVSA 183 (640)
Q Consensus 109 ~~~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~~~~---w~~v~ii~~~~~--~g~~~~~~ 183 (640)
.......+...++|+|......+... ...++..+.......++.++++|...+ .++++++..... ......+.
T Consensus 72 ~~~~~~~~~~~~iPvV~~~~~~~~~~--~~~~~~~V~~D~~~~g~~a~~~L~~~g~g~~~~I~~i~~~~~~~~~~~R~~G 149 (306)
T 2vk2_A 72 WEPVLKEAKDAEIPVFLLDRSIDVKD--KSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKG 149 (306)
T ss_dssp CHHHHHHHHHTTCCEEEESSCCCCSC--GGGSSEEEECCHHHHHHHHHHHHHHHHTTSCEEEEEEECSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCEEEecCCCCCCC--ccceEEEEecCHHHHHHHHHHHHHHhcCCCCCeEEEEEcCCCChhHHHHHHH
Confidence 12233445567999998654322110 001234566677777788888877665 789999975422 33455678
Q ss_pred HHHHHhhcCe-EEEEeeccCCCCCCChhHHHHHHHHHhc-----CCceEEEEecChhhHHHHHHHHHHcCCccC-CeEEE
Q 006567 184 LNDKLAERRC-RISYKSGIPPESGVNTGYVMDLLVKVAL-----MESRVIVLHVSPSLGFQVFSVAKYLGMMGN-GYVWI 256 (640)
Q Consensus 184 ~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~~~~l~~l~~-----~~~~vivl~~~~~~~~~il~~a~~~gl~~~-~~~~i 256 (640)
|++.+++.|. .+.....-. .+..+-...++++.+ ..+++|+. .+...+..+++++++.|+.-+ +...+
T Consensus 150 f~~al~~~g~~~~~~~~~~~----~~~~~~~~~~~~ll~~~~~~~~~~ai~~-~nd~~A~g~~~al~~~G~~vP~di~vi 224 (306)
T 2vk2_A 150 FAEAIKNAPNIKIIRSQSGD----FTRSKGKEVMESFIKAENNGKNICMVYA-HNDDMVIGAIQAIKEAGLKPGKDILTG 224 (306)
T ss_dssp HHHHTTTCTTEEEEEEEECT----TCHHHHHHHHHHHHHHTTTTTTCCEEEE-SSHHHHHHHHHHHHHTTCCBTTTBEEE
T ss_pred HHHHHhhCCCeEEEEeccCC----CcHHHHHHHHHHHHHhCCCCCCeeEEEE-CCchHHHHHHHHHHHcCCCCCCCeEEE
Confidence 8888988885 332211111 123333344444443 34666654 445567788999999998644 33344
Q ss_pred E
Q 006567 257 A 257 (640)
Q Consensus 257 ~ 257 (640)
+
T Consensus 225 g 225 (306)
T 2vk2_A 225 S 225 (306)
T ss_dssp E
T ss_pred e
Confidence 4
No 103
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=97.88 E-value=0.0002 Score=70.00 Aligned_cols=210 Identities=12% Similarity=0.043 Sum_probs=125.7
Q ss_pred CeeEEEEEEeec-----C-CccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcCcEEEEc
Q 006567 29 PAVVNVGALFTL-----D-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIG 102 (640)
Q Consensus 29 ~~~i~IG~l~~~-----~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aiiG 102 (640)
..+-+||+++|. . ..+-.....+++.+.++. |+++. +.++..++..-......+..+++.+||-
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~~~~~~vdgiIi 75 (292)
T 3k4h_A 6 QTTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVE--------GYALY--MSTGETEEEIFNGVVKMVQGRQIGGIIL 75 (292)
T ss_dssp -CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHT--------TCEEE--ECCCCSHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CCCCEEEEEecCCccccccCHHHHHHHHHHHHHHHHc--------CCEEE--EEeCCCCHHHHHHHHHHHHcCCCCEEEE
Confidence 345789999997 2 333334455555555542 45544 4555555544444455556678887764
Q ss_pred CCChHHHHHHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCC--CCccc
Q 006567 103 PQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNE--YGRNG 180 (640)
Q Consensus 103 p~~s~~~~~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~~~~--~g~~~ 180 (640)
....... .....+...++|+|......+.. +.+..+.......+..++++|...|.++++++..... .....
T Consensus 76 ~~~~~~~-~~~~~l~~~~iPvV~~~~~~~~~-----~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R 149 (292)
T 3k4h_A 76 LYSREND-RIIQYLHEQNFPFVLIGKPYDRK-----DEITYVDNDNYTAAREVAEYLISLGHKQIAFIGGGSDLLVTRDR 149 (292)
T ss_dssp SCCBTTC-HHHHHHHHTTCCEEEESCCSSCT-----TTSCEEECCHHHHHHHHHHHHHHTTCCCEEEEESCTTBHHHHHH
T ss_pred eCCCCCh-HHHHHHHHCCCCEEEECCCCCCC-----CCCCEEEECcHHHHHHHHHHHHHCCCceEEEEeCcccchhHHHH
Confidence 3222222 33455566799999864433211 1133456677778888899988889999999985432 33455
Q ss_pred HHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcC--CceEEEEecChhhHHHHHHHHHHcCCccCC-eEEEE
Q 006567 181 VSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNG-YVWIA 257 (640)
Q Consensus 181 ~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~vivl~~~~~~~~~il~~a~~~gl~~~~-~~~i~ 257 (640)
.+.|++.+++.|+.+.....+... .+.......+.++.+. .+++|+ +.+...+..+++++++.|+.-++ ...++
T Consensus 150 ~~gf~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vig 226 (292)
T 3k4h_A 150 LAGMSDALKLADIVLPKEYILHFD--FSRESGQQAVEELMGLQQPPTAIM-ATDDLIGLGVLSALSKKGFVVPKDVSIVS 226 (292)
T ss_dssp HHHHHHHHHHTTCCCCGGGEEECC--SSHHHHHHHHHHHHTSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEEE
T ss_pred HHHHHHHHHHcCCCCChheEEecC--CCHHHHHHHHHHHHcCCCCCcEEE-EcChHHHHHHHHHHHHhCCCCCCeEEEEE
Confidence 778889999888754321111111 2244455566666554 456655 44556677899999999986443 33444
No 104
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=97.88 E-value=0.0003 Score=70.48 Aligned_cols=211 Identities=8% Similarity=-0.027 Sum_probs=129.3
Q ss_pred eeEEEEEEeec---CCccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcCcEEEEcCCCh
Q 006567 30 AVVNVGALFTL---DSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCS 106 (640)
Q Consensus 30 ~~i~IG~l~~~---~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aiiGp~~s 106 (640)
.+-+||+++|. +..+-.....+++.+.++. |+.+. +.++..++..-.+....++.+++.+||-....
T Consensus 60 ~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 129 (338)
T 3dbi_A 60 STQTLGLVVTNTLYHGIYFSELLFHAARMAEEK--------GRQLL--LADGKHSAEEERQAIQYLLDLRCDAIMIYPRF 129 (338)
T ss_dssp CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHT--------TCEEE--EEECTTSHHHHHHHHHHHHHTTCSEEEECCSS
T ss_pred CCCEEEEEecCCcccChhHHHHHHHHHHHHHHC--------CCEEE--EEeCCCChHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 35679999997 2333234455555555542 55554 44566666666666667777888877753333
Q ss_pred HHHHHHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcC--CCCcccHHHH
Q 006567 107 TVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDN--EYGRNGVSAL 184 (640)
Q Consensus 107 ~~~~~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~~~--~~g~~~~~~~ 184 (640)
.....+...+...++|+|......+. +.+..+.......+..++++|...|.++++++.... .......+.|
T Consensus 130 ~~~~~~~~~~~~~~iPvV~~~~~~~~------~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf 203 (338)
T 3dbi_A 130 LSVDEIDDIIDAHSQPIMVLNRRLRK------NSSHSVWCDHKQTSFNAVAELINAGHQEIAFLTGSMDSPTSIERLAGY 203 (338)
T ss_dssp SCHHHHHHHHHHCSSCEEEESSCCSS------SGGGEECBCHHHHHHHHHHHHHHTTCCSEEEECCCTTCHHHHHHHHHH
T ss_pred CChHHHHHHHHcCCCCEEEEcCCCCC------CCCCEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCCCCccHHHHHHHH
Confidence 22345667777889999976443321 112235667777788888888888999999997532 2334556788
Q ss_pred HHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcC--CceEEEEecChhhHHHHHHHHHHcCCccCC-eEEEEeC
Q 006567 185 NDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNG-YVWIATD 259 (640)
Q Consensus 185 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~vivl~~~~~~~~~il~~a~~~gl~~~~-~~~i~~~ 259 (640)
++.+++.|+.+.....+... .+..+-...+.++.+. .+++|+. .+...+..+++++++.|+.-++ ...++-+
T Consensus 204 ~~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~ai~~-~nd~~A~g~~~al~~~G~~vP~di~vvg~D 278 (338)
T 3dbi_A 204 KDALAQHGIALNEKLIANGK--WTPASGAEGVEMLLERGAKFSALVA-SNDDMAIGAMKALHERGVAVPEQVSVIGFD 278 (338)
T ss_dssp HHHHHHTTCCCCGGGEECCC--SSHHHHHHHHHHHHHTTCCCSEEEE-SSHHHHHHHHHHHHHTTCCTTTTCEEEEES
T ss_pred HHHHHHCCCCCCcceEEeCC--CCHHHHHHHHHHHHcCCCCCeEEEE-CChHHHHHHHHHHHHcCCCCCCCeEEEEEC
Confidence 99999888764322111111 2234444555555543 4566554 4556677899999999987543 3444433
No 105
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=97.87 E-value=0.00025 Score=70.88 Aligned_cols=208 Identities=10% Similarity=0.024 Sum_probs=123.2
Q ss_pred eeEEEEEEeecC-CccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcCcEEEEcCCChHH
Q 006567 30 AVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTV 108 (640)
Q Consensus 30 ~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aiiGp~~s~~ 108 (640)
.+.+||++.|.. ..+......+++.+.++ .|+.+.+ .++..++....+....+..+++.+||.......
T Consensus 62 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 131 (332)
T 2o20_A 62 RTTTVGVILPTITSTYFAAITRGVDDIASM--------YKYNMIL--ANSDNDVEKEEKVLETFLSKQVDGIVYMGSSLD 131 (332)
T ss_dssp CCCEEEEEESCTTCHHHHHHHHHHHHHHHH--------TTCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEECSSCCC
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHH--------cCCEEEE--EECCCChHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 456899999863 33333445566555554 2566544 355556655555666677778887775332111
Q ss_pred HHHHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCC--CCcccHHHHHH
Q 006567 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNE--YGRNGVSALND 186 (640)
Q Consensus 109 ~~~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~~~~--~g~~~~~~~~~ 186 (640)
...+.. +...++|+|......+ +. .+..+.......+..++++|...|.++++++..... ......+.|++
T Consensus 132 ~~~~~~-l~~~~iPvV~~~~~~~---~~---~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~ 204 (332)
T 2o20_A 132 EKIRTS-LKNSRTPVVLVGTIDG---DK---EIPSVNIDYHLAAYQSTKKLIDSGNKKIAYIMGSLKDVENTERMVGYQE 204 (332)
T ss_dssp HHHHHH-HHHHCCCEEEESCCCT---TS---CSCEEECCHHHHHHHHHHHHHHTTCSSEEEECSCTTSHHHHHHHHHHHH
T ss_pred HHHHHH-HHhCCCCEEEEccccC---CC---CCCEEEeChHHHHHHHHHHHHHCCCCeEEEEeCCcccccHHHHHHHHHH
Confidence 222333 3456899998644322 11 122345667777788888888889999999975432 33455678889
Q ss_pred HHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecChhhHHHHHHHHHHcCCccCC-eEEEE
Q 006567 187 KLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNG-YVWIA 257 (640)
Q Consensus 187 ~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~il~~a~~~gl~~~~-~~~i~ 257 (640)
.+++.|+.+.....+... .+..+-...++++.+..+++|+. .+...+..+++++++.|+.-++ ...++
T Consensus 205 al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~ai~~-~~d~~A~g~~~al~~~G~~vP~disvig 273 (332)
T 2o20_A 205 ALLEANIEFDENLVFEGN--YSYEQGKALAERLLERGATSAVV-SHDTVAVGLLSAMMDKGVKVPEDFEIIS 273 (332)
T ss_dssp HHHHTTCCCCGGGEECSC--CSHHHHHHHHHHHHHTTCCEEEE-SCHHHHHHHHHHHHHTTCCTTTTCEEEE
T ss_pred HHHHcCCCCChhhEEeCC--CCHHHHHHHHHHHhccCCCEEEE-CChHHHHHHHHHHHHcCCCCccCEEEEE
Confidence 999888754321111111 12333334444444336777665 4556677899999999986443 33443
No 106
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=97.87 E-value=0.00045 Score=69.29 Aligned_cols=208 Identities=7% Similarity=-0.029 Sum_probs=121.9
Q ss_pred CCeeEEEEEEeec--CCccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCC--CChHHHHHHHHHhHhcCcEEEEcC
Q 006567 28 RPAVVNVGALFTL--DSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSN--CSGFIGMVEALRFMETDIVAIIGP 103 (640)
Q Consensus 28 ~~~~i~IG~l~~~--~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~--~~~~~a~~~a~~l~~~~v~aiiGp 103 (640)
...+.+||++.|. +..+-.....+++.+.++ .|+++.+...++. .++..-.+....++.+++.+||-+
T Consensus 40 ~~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~ 111 (342)
T 1jx6_A 40 TQRPIKISVVYPGQQVSDYWVRNIASFEKRLYK--------LNINYQLNQVFTRPNADIKQQSLSLMEALKSKSDYLIFT 111 (342)
T ss_dssp CSSCEEEEEEECCCSSCCHHHHHHHHHHHHHHH--------TTCCEEEEEEECCTTCCHHHHHHHHHHHHHTTCSEEEEC
T ss_pred cCCceEEEEEecCCcccHHHHHHHHHHHHHHHH--------cCCeEEEEecCCCCccCHHHHHHHHHHHHhcCCCEEEEe
Confidence 4567899999996 333333445566555554 2566666554554 566655566667777888887765
Q ss_pred CChHHHHHHHHhhccCCceEEecccCCCCCCC-CCCCcEEEecCCchHHHHHHHHHHHhc-C-CcEEEEEEEcCC-CCcc
Q 006567 104 QCSTVAHIVSYVSNELQVPLLSFGVTDPTLSS-LQYPFFVRTTQSDSYQMTAVAEMVSYY-G-WNAVSVIFVDNE-YGRN 179 (640)
Q Consensus 104 ~~s~~~~~v~~~~~~~~iP~is~~~~~~~l~~-~~~~~~~r~~p~~~~~~~al~~ll~~~-~-w~~v~ii~~~~~-~g~~ 179 (640)
............+...++|+|........... ...+.+..+.+.....++.++++|... | .++++++..... ....
T Consensus 112 ~~~~~~~~~~~~~~~~~ip~V~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~Gg~~~I~~i~~~~~~~~~~ 191 (342)
T 1jx6_A 112 LDTTRHRKFVEHVLDSTNTKLILQNITTPVREWDKHQPFLYVGFDHAEGSRELATEFGKFFPKHTYYSVLYFSEGYISDV 191 (342)
T ss_dssp CSSSTTHHHHHHHHHHCSCEEEEETCCSCBGGGTTSCCSEEEECCHHHHHHHHHHHHHHHSCTTCEEEEECCSTTHHHHH
T ss_pred CChHhHHHHHHHHHHcCCCEEEEecCCCcccccccCCCceEEecCcHHHHHHHHHHHHHHcCCCceEEEEEcCCcchhhH
Confidence 44332222233344568998875222111100 011233456677777888888887764 6 999999975432 2334
Q ss_pred cHHHHHHHHhhcCe-EEEEeeccCCCCCCChhHHHHHHHHHhcC--CceEEEEecChhhHHHHHHHHHHcCC
Q 006567 180 GVSALNDKLAERRC-RISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGM 248 (640)
Q Consensus 180 ~~~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~vivl~~~~~~~~~il~~a~~~gl 248 (640)
..+.|++.+++.|+ ..... +... .+...-...++++.+. .+++|+. .+...+..+++++++.|+
T Consensus 192 R~~Gf~~~l~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~-~nd~~A~g~~~al~~~g~ 258 (342)
T 1jx6_A 192 RGDTFIHQVNRDNNFELQSA--YYTK--ATKQSGYDAAKASLAKHPDVDFIYA-CSTDVALGAVDALAELGR 258 (342)
T ss_dssp HHHHHHHHHHHHHCCEEEEE--ECCC--SSHHHHHHHHHHHHHHCCCCSEEEE-SSHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCCcEEEEE--ecCC--CCHHHHHHHHHHHHHhCCCccEEEE-CCChhHHHHHHHHHHcCC
Confidence 56678888888776 32222 2211 2233344445555442 4566554 445567788999999987
No 107
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=97.86 E-value=0.00056 Score=66.09 Aligned_cols=201 Identities=9% Similarity=0.001 Sum_probs=119.9
Q ss_pred eEEEEEEeecC-CccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcCcEEEEc-CCChHH
Q 006567 31 VVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIG-PQCSTV 108 (640)
Q Consensus 31 ~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aiiG-p~~s~~ 108 (640)
+-+||+++|.. ..+-.....+++.+.++ .|+++.+ .++..++....+....++.+++.++|- |....
T Consensus 3 s~~Ig~i~~~~~~~~~~~~~~gi~~~~~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~- 71 (275)
T 3d8u_A 3 AYSIALIIPSLFEKACAHFLPSFQQALNK--------AGYQLLL--GYSDYSIEQEEKLLSTFLESRPAGVVLFGSEHS- 71 (275)
T ss_dssp -CEEEEEESCSSCHHHHHHHHHHHHHHHH--------TSCEECC--EECTTCHHHHHHHHHHHHTSCCCCEEEESSCCC-
T ss_pred ceEEEEEeCCCccccHHHHHHHHHHHHHH--------CCCEEEE--EcCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCC-
Confidence 35799999863 32223445555555554 2455443 345556655555666677777776553 32222
Q ss_pred HHHHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCC--CCcccHHHHHH
Q 006567 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNE--YGRNGVSALND 186 (640)
Q Consensus 109 ~~~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~~~~--~g~~~~~~~~~ 186 (640)
.. ....+...++|+|......+ + +.+..+.......++.++++|...|.++++++..... ......+.|++
T Consensus 72 ~~-~~~~l~~~~iPvV~~~~~~~---~---~~~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~ 144 (275)
T 3d8u_A 72 QR-THQLLEASNTPVLEIAELSS---K---ASYLNIGVDHFEVGKACTRHLIEQGFKNVGFIGARGNHSTLQRQLHGWQS 144 (275)
T ss_dssp HH-HHHHHHHHTCCEEEESSSCS---S---SSSEEECBCHHHHHHHHHHHHHTTTCCCEEEEECSCSSHHHHHHHHHHHH
T ss_pred HH-HHHHHHhCCCCEEEEeeccC---C---CCCCEEEEChHHHHHHHHHHHHHCCCCeEEEEcCCCCCchHHHHHHHHHH
Confidence 12 23334457999998643222 1 2234566777777888889888889999999985432 33456778889
Q ss_pred HHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcC--CceEEEEecChhhHHHHHHHHHHcCCccCC
Q 006567 187 KLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNG 252 (640)
Q Consensus 187 ~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~vivl~~~~~~~~~il~~a~~~gl~~~~ 252 (640)
.+++.|+.+.....+... .+..+....++++.+. .+++|+. .+...+..+++++++.|+.-++
T Consensus 145 ~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~ 209 (275)
T 3d8u_A 145 AMIENYLTPDHFLTTHEA--PSSQLGAEGLAKLLLRDSSLNALVC-SHEEIAIGALFECHRRVLKVPT 209 (275)
T ss_dssp HHHHTTCCCCCEEECSSC--CCHHHHHHHHHHHHTTCTTCCEEEE-SSHHHHHHHHHHHHHTTCCTTT
T ss_pred HHHHcCCCCCccEEEeCC--CChhHHHHHHHHHHhCCCCCCEEEE-cCcHHHHHHHHHHHHcCCCCCC
Confidence 999888754322112111 2244444556665544 3666654 4455677889999999986443
No 108
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=97.86 E-value=0.00081 Score=66.10 Aligned_cols=214 Identities=8% Similarity=-0.004 Sum_probs=126.0
Q ss_pred eEEEEEEeecC-CccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcCcEEEEc-CCChHH
Q 006567 31 VVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIG-PQCSTV 108 (640)
Q Consensus 31 ~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aiiG-p~~s~~ 108 (640)
+++||++.|.. ..+-.....+++.+.++. |+++ .+.++ .++..-.+....++.+++.+||- |.....
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~~--~~~~~-~~~~~~~~~i~~l~~~~vdgiii~~~~~~~ 70 (306)
T 8abp_A 2 NLKLGFLVKQPEEPWFQTEWKFADKAGKDL--------GFEV--IKIAV-PDGEKTLNAIDSLAASGAKGFVICTPDPKL 70 (306)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHHHHHH--------TEEE--EEEEC-CSHHHHHHHHHHHHHTTCCEEEEECSCGGG
T ss_pred CeEEEEEeCCCCchHHHHHHHHHHHHHHHc--------CCEE--EEeCC-CCHHHHHHHHHHHHHcCCCEEEEeCCCchh
Confidence 58999999964 333345566776666664 4555 34455 47766677777888888887664 444444
Q ss_pred HHHHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHH-hcCC-----cEEEEEE-EcC--CCCcc
Q 006567 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVS-YYGW-----NAVSVIF-VDN--EYGRN 179 (640)
Q Consensus 109 ~~~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~-~~~w-----~~v~ii~-~~~--~~g~~ 179 (640)
.......+...++|+|......+.........+..+.......++..+++|. +.+- .+++++. ... .....
T Consensus 71 ~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~~g~~~~~~~~i~~~~~~~~~~~~~~~ 150 (306)
T 8abp_A 71 GSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMLAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARR 150 (306)
T ss_dssp HHHHHHHHHHTTCEEEEESSCCBCTTSCBCTTSCEEEECHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEECTTSHHHHH
T ss_pred hHHHHHHHHHCCCcEEEeCCCCCCccccccccccEEecChhHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCChHHHH
Confidence 4444556667899999875332222111111233445566666676666544 3333 3888886 332 23345
Q ss_pred cHHHHHHHHhhcCe---EEEEeeccCCCCCCChhHHHHHHHHHhcCC--ceE-EEEecChhhHHHHHHHHHHcCCccCCe
Q 006567 180 GVSALNDKLAERRC---RISYKSGIPPESGVNTGYVMDLLVKVALME--SRV-IVLHVSPSLGFQVFSVAKYLGMMGNGY 253 (640)
Q Consensus 180 ~~~~~~~~~~~~g~---~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~v-ivl~~~~~~~~~il~~a~~~gl~~~~~ 253 (640)
..+.+++.+++.|. ++.....-. .+.......++++.... ++. +|++++...+.-+++++++.|+.-.+.
T Consensus 151 R~~Gf~~~l~~~g~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~a~~i~~~nD~~A~g~~~al~~~g~~v~di 226 (306)
T 8abp_A 151 RTTGSMDALKAAGFPEKQIYQVPTKS----NDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADI 226 (306)
T ss_dssp HHHHHHHHHHHHTCCGGGEEEEECSS----SSHHHHHHHHHHHHTTCTTCSEEEEECSSHHHHHHHHHHHHHTTCCGGGE
T ss_pred HHHHHHHHHHhcCCCCcEEEeeccCC----CChHHHHHHHHHHHHhCCCCceEEEEeCCcHHHHHHHHHHHHcCCCCCce
Confidence 56788888888764 233222211 23445555666666544 455 344556667778999999999864233
Q ss_pred EEEEeC
Q 006567 254 VWIATD 259 (640)
Q Consensus 254 ~~i~~~ 259 (640)
..++.+
T Consensus 227 ~vvG~D 232 (306)
T 8abp_A 227 IGIGIN 232 (306)
T ss_dssp EEEEES
T ss_pred EEEEeC
Confidence 444443
No 109
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=97.85 E-value=0.00015 Score=70.96 Aligned_cols=202 Identities=12% Similarity=0.065 Sum_probs=112.0
Q ss_pred eeEEEEEEeecC-CccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcCcEEEEcCCChHH
Q 006567 30 AVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTV 108 (640)
Q Consensus 30 ~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aiiGp~~s~~ 108 (640)
.+.+||+++|.. ..+-.....+++.+.++ .|+++.+. +++..++....+....++.+++.+||.......
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~~-~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 77 (290)
T 3clk_A 7 SSNVIAAVVSSVRTNFAQQILDGIQEEAHK--------NGYNLIIV-YSGSADPEEQKHALLTAIERPVMGILLLSIALT 77 (290)
T ss_dssp -CCEEEEECCCCSSSHHHHHHHHHHHHHHT--------TTCEEEEE-C----------CHHHHHHSSCCSEEEEESCC--
T ss_pred cCCEEEEEeCCCCChHHHHHHHHHHHHHHH--------cCCeEEEE-eCCCCCHHHHHHHHHHHHhcCCCEEEEecccCC
Confidence 456899999853 33333445555555443 25655543 144445444444555667778887775322222
Q ss_pred HHHHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHHhcCCcEEEEEEEc--CCCCcccHHHHHH
Q 006567 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVD--NEYGRNGVSALND 186 (640)
Q Consensus 109 ~~~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~~--~~~g~~~~~~~~~ 186 (640)
.. ....+...++|+|......+. + +..+.......++.++++|...|.++++++... ........+.|++
T Consensus 78 ~~-~~~~l~~~~iPvV~~~~~~~~------~-~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~ 149 (290)
T 3clk_A 78 DD-NLQLLQSSDVPYCFLSMGFDD------D-RPFISSDDEDIGYQATNLLINEGHRQIGIAGIDQYPYTGRKRLAGYKK 149 (290)
T ss_dssp ---CHHHHHCC--CEEEESCC--C------C-SCEEECCHHHHHHHHHHHHHTTTCCSEEEESCCCCTTTHHHHHHHHHH
T ss_pred HH-HHHHHHhCCCCEEEEcCCCCC------C-CCEEEeChHHHHHHHHHHHHHcCCCEEEEEeCCCCCcchHHHHHHHHH
Confidence 22 233445689999986433221 1 334566777788888898888899999999753 2344556778899
Q ss_pred HHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhc-CCceEEEEecChhhHHHHHHHHHHcCCccC
Q 006567 187 KLAERRCRISYKSGIPPESGVNTGYVMDLLVKVAL-MESRVIVLHVSPSLGFQVFSVAKYLGMMGN 251 (640)
Q Consensus 187 ~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~vivl~~~~~~~~~il~~a~~~gl~~~ 251 (640)
.+++.|+.+.....+... .+..+-...++++.+ ..+++|+. .+...+..+++++++.|+.-+
T Consensus 150 ~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP 212 (290)
T 3clk_A 150 ALKEANIAINQEWIKPGD--YSYTSGEQAMKAFGKNTDLTGIIA-ASDMTAIGILNQASSFGIEVP 212 (290)
T ss_dssp HHHHTTCCCCGGGEECCC--SSHHHHHHHHHHHCTTCCCSEEEE-SSHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCCCCcceEEcCC--CChhhHHHHHHHHhccCCCcEEEE-CCcHHHHHHHHHHHHcCCCCC
Confidence 999888764311111111 123444455666653 44666654 445567788999999998644
No 110
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=97.84 E-value=0.00025 Score=69.13 Aligned_cols=208 Identities=9% Similarity=0.015 Sum_probs=122.3
Q ss_pred eEEEEEEeec-----CCccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcCcEEEEc-CC
Q 006567 31 VVNVGALFTL-----DSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIG-PQ 104 (640)
Q Consensus 31 ~i~IG~l~~~-----~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aiiG-p~ 104 (640)
+-+||+++|. +..+-.....+++.+.++ .|+++.+ .++..++....+....+..+++.+||. |.
T Consensus 4 s~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 73 (287)
T 3bbl_A 4 SFMIGYSWTQTEPGQVNHILDQFLSSMVREAGA--------VNYFVLP--FPFSEDRSQIDIYRDLIRSGNVDGFVLSSI 73 (287)
T ss_dssp CCEEEECCCCCCTTCSCCTHHHHHHHHHHHHHH--------TTCEEEE--CCCCSSTTCCHHHHHHHHTTCCSEEEECSC
T ss_pred eeEEEEEecccccccCChhHHHHHHHHHHHHHH--------cCCEEEE--EeCCCchHHHHHHHHHHHcCCCCEEEEeec
Confidence 4579999986 333434556666666665 2565543 444444433334455666778887775 33
Q ss_pred ChHHHHHHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCC--CCcccHH
Q 006567 105 CSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNE--YGRNGVS 182 (640)
Q Consensus 105 ~s~~~~~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~~~~--~g~~~~~ 182 (640)
.... . ....+...++|+|......+ +. .+..+.......++.++++|...|.++++++..... ......+
T Consensus 74 ~~~~-~-~~~~l~~~~iPvV~~~~~~~---~~---~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~ 145 (287)
T 3bbl_A 74 NYND-P-RVQFLLKQKFPFVAFGRSNP---DW---DFAWVDIDGTAGTRQAVEYLIGRGHRRIAILAWPEDSRVGNDRLQ 145 (287)
T ss_dssp CTTC-H-HHHHHHHTTCCEEEESCCST---TC---CCCEEEECHHHHHHHHHHHHHHHTCCCEEEEECCTTCHHHHHHHH
T ss_pred CCCc-H-HHHHHHhcCCCEEEECCcCC---CC---CCCEEEeccHHHHHHHHHHHHHCCCCeEEEEeCCcccccHHHHHH
Confidence 2221 2 23334557999998643322 11 122345667777788888887789999999985432 3345667
Q ss_pred HHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhc-C---CceEEEEecChhhHHHHHHHHHHcCCccC-CeEEEE
Q 006567 183 ALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVAL-M---ESRVIVLHVSPSLGFQVFSVAKYLGMMGN-GYVWIA 257 (640)
Q Consensus 183 ~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~-~---~~~vivl~~~~~~~~~il~~a~~~gl~~~-~~~~i~ 257 (640)
.|++.+++.|+.+.....+... .+..+-...++++.+ . .+++|+. .+...+..+++++++.|+.-+ +...++
T Consensus 146 Gf~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~ai~~-~~d~~a~g~~~al~~~G~~vP~di~vig 222 (287)
T 3bbl_A 146 GYLEAMQTAQLPIETGYILRGE--GTFEVGRAMTLHLLDLSPERRPTAIMT-LNDTMAIGAMAAARERGLTIGTDLAIIG 222 (287)
T ss_dssp HHHHHHHHTTCCCCGGGEEECC--SSHHHHHHHHHHHHTSCTTTSCSEEEE-SSHHHHHHHHHHHHHTTCCBTTTBEEEE
T ss_pred HHHHHHHHcCCCCChhhEEeCC--CCHHHHHHHHHHHHhhCCCCCCcEEEE-CCcHHHHHHHHHHHHcCCCCCCCEEEEE
Confidence 8888998888754311111111 123444455666654 3 4566654 455667788999999998644 344444
Q ss_pred eC
Q 006567 258 TD 259 (640)
Q Consensus 258 ~~ 259 (640)
-+
T Consensus 223 ~d 224 (287)
T 3bbl_A 223 FD 224 (287)
T ss_dssp ES
T ss_pred EC
Confidence 33
No 111
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=97.83 E-value=0.00017 Score=70.52 Aligned_cols=208 Identities=7% Similarity=-0.060 Sum_probs=120.3
Q ss_pred eeEEEEEEeecC-CccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHH---HHHHhHhcCcEEEEcCCC
Q 006567 30 AVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMV---EALRFMETDIVAIIGPQC 105 (640)
Q Consensus 30 ~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~---~a~~l~~~~v~aiiGp~~ 105 (640)
.+.+||++.|.. ..+-.....+++.+.++ .|+++.+ .++..++....+ ....++.+++.+||....
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 76 (290)
T 2rgy_A 7 QLGIIGLFVPTFFGSYYGTILKQTDLELRA--------VHRHVVV--ATGCGESTPREQALEAVRFLIGRDCDGVVVISH 76 (290)
T ss_dssp -CCEEEEECSCSCSHHHHHHHHHHHHHHHH--------TTCEEEE--ECCCSSSCHHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred CCCeEEEEeCCCCCchHHHHHHHHHHHHHH--------CCCEEEE--EeCCCchhhhhhHHHHHHHHHhcCccEEEEecC
Confidence 456899999863 32333445566555554 2566554 344444444444 555667778887775332
Q ss_pred hHHHHHHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCC--CCcccHHH
Q 006567 106 STVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNE--YGRNGVSA 183 (640)
Q Consensus 106 s~~~~~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~~~~--~g~~~~~~ 183 (640)
......+ ..+...++|+|......+. +.+..+.......++.++++|...|.++++++..... ......+.
T Consensus 77 ~~~~~~~-~~l~~~~iPvV~~~~~~~~------~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~G 149 (290)
T 2rgy_A 77 DLHDEDL-DELHRMHPKMVFLNRAFDA------LPDASFCPDHRRGGELAAATLIEHGHRKLAVISGPFTASDNVERLDG 149 (290)
T ss_dssp SSCHHHH-HHHHHHCSSEEEESSCCTT------SGGGEECCCHHHHHHHHHHHHHHTTCCSEEEEESCTTCHHHHHHHHH
T ss_pred CCCHHHH-HHHhhcCCCEEEEccccCC------CCCCEEEeCcHHHHHHHHHHHHHCCCceEEEEeCCCCCccHHHHHHH
Confidence 2112222 3344579999986433221 1223455677777888888888889999999985422 33455678
Q ss_pred HHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhc--CCceEEEEecChhhHHHHHHHHHHcCCccCC-eEEEE
Q 006567 184 LNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVAL--MESRVIVLHVSPSLGFQVFSVAKYLGMMGNG-YVWIA 257 (640)
Q Consensus 184 ~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~vivl~~~~~~~~~il~~a~~~gl~~~~-~~~i~ 257 (640)
+++.+++.|+.+.....+... .+..+-...++++.+ ..+++|+. ++...+..+++++++.|+.-++ ...++
T Consensus 150 f~~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~A~g~~~al~~~G~~vP~di~vvg 223 (290)
T 2rgy_A 150 FFDELARHGIARDSVPLIESD--FSPEGGYAATCQLLESKAPFTGLFC-ANDTMAVSALARFQQLGISVPGDVSVIG 223 (290)
T ss_dssp HHHHHHTTTCCGGGSCEEECC--SSHHHHHHHHHHHHHHTCCCSEEEE-SSHHHHHHHHHHHHHTTCCTTTTCEEEE
T ss_pred HHHHHHHcCCCCCcccEEecC--CChhHHHHHHHHHHhCCCCCcEEEE-CCcHHHHHHHHHHHHcCCCCCCceEEEE
Confidence 888898888653211111111 123333344445443 35676664 4556677899999999986443 33444
No 112
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=97.79 E-value=0.00081 Score=67.35 Aligned_cols=204 Identities=8% Similarity=0.022 Sum_probs=121.0
Q ss_pred eeEEEEEEeecC-CccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcCcEEEEc-CCChH
Q 006567 30 AVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIG-PQCST 107 (640)
Q Consensus 30 ~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aiiG-p~~s~ 107 (640)
.+.+||++.|.. ..+......+++.+.++ .|+++.+ .++..++....+....++.+++.+||- |....
T Consensus 57 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 126 (340)
T 1qpz_A 57 HTKSIGLLATSSEAAYFAEIIEAVEKNCFQ--------KGYTLIL--GNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYP 126 (340)
T ss_dssp CCSEEEEEESCSCSHHHHHHHHHHHHHHHH--------TTCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEECCSCCC
T ss_pred CCCEEEEEeCCCCChHHHHHHHHHHHHHHH--------cCCEEEE--EeCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCC
Confidence 356899999864 33333445555555554 2565554 455566665555566677778887774 32221
Q ss_pred HHHHHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCC--CCcccHHHHH
Q 006567 108 VAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNE--YGRNGVSALN 185 (640)
Q Consensus 108 ~~~~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~~~~--~g~~~~~~~~ 185 (640)
. ..+..+....++|+|......+. . +....+.......+..++++|...|.++++++..... ......+.|+
T Consensus 127 ~-~~~~~l~~~~~iPvV~~~~~~~~---~--~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~g~~~~~~~~~R~~Gf~ 200 (340)
T 1qpz_A 127 E-PLLAMLEEYRHIPMVVMDWGEAK---A--DFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFM 200 (340)
T ss_dssp H-HHHHHHHTTTTSCEEEEEESSCC---C--SSSEEEECCHHHHHHHHHHHHHHHTCCCEEEECCCTTSHHHHHHHHHHH
T ss_pred h-HHHHHHHhhCCCCEEEEecccCC---C--CCCCEEEECHHHHHHHHHHHHHHCCCCEEEEEeCCCccccHHHHHHHHH
Confidence 1 11222223368999986543221 1 1123455667777788888888889999999975422 3345567888
Q ss_pred HHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcC--CceEEEEecChhhHHHHHHHHHHcCCccCC
Q 006567 186 DKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNG 252 (640)
Q Consensus 186 ~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~vivl~~~~~~~~~il~~a~~~gl~~~~ 252 (640)
+.+++.|+.+.....+... .+..+-...++++.+. .+++|+. .+...+..+++++++.|+.-++
T Consensus 201 ~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~ai~~-~nd~~A~g~~~al~~~G~~vP~ 266 (340)
T 1qpz_A 201 KAMEEAMIKVPESWIVQGD--FEPESGYRAMQQILSQPHRPTAVFC-GGDIMAMGALCAADEMGLRVPQ 266 (340)
T ss_dssp HHHHHTTCCCCGGGBCCCC--SSHHHHHHHHHHHHTSSSCCSEEEE-SSHHHHHHHHHHHHHTTCCTTT
T ss_pred HHHHHCCCCCChhheEeCC--CCHHHHHHHHHHHHcCCCCCcEEEE-CCHHHHHHHHHHHHHcCCCCCC
Confidence 9999888754322111111 1233444455665553 4666655 4455677889999999986443
No 113
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=97.78 E-value=0.00059 Score=66.55 Aligned_cols=202 Identities=11% Similarity=0.025 Sum_probs=118.3
Q ss_pred eeEEEEEEeecCC---ccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcCcEEEEc-CCC
Q 006567 30 AVVNVGALFTLDS---TIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIG-PQC 105 (640)
Q Consensus 30 ~~i~IG~l~~~~~---~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aiiG-p~~ 105 (640)
.+-+||+++|... .+-.....+++.+.++ .|+++.+. +...++.........+.++++.+||- |..
T Consensus 7 ~s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~~--~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 76 (288)
T 3gv0_A 7 KTNVIALVLSVDEELMGFTSQMVFGITEVLST--------TQYHLVVT--PHIHAKDSMVPIRYILETGSADGVIISKIE 76 (288)
T ss_dssp CCCEEEEECBCCCCSSCHHHHHHHHHHHHHTT--------SSCEEEEC--CBSSGGGTTHHHHHHHHHTCCSEEEEESCC
T ss_pred CCCEEEEEecCCccccHHHHHHHHHHHHHHHH--------cCCEEEEe--cCCcchhHHHHHHHHHHcCCccEEEEecCC
Confidence 4578999999743 2222334444433333 25665544 33333222222222244567766553 222
Q ss_pred hHHHHHHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCC--CCcccHHH
Q 006567 106 STVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNE--YGRNGVSA 183 (640)
Q Consensus 106 s~~~~~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~~~~--~g~~~~~~ 183 (640)
... .....+...++|+|......+. +.+-.+.......++.++++|...|.++++++..... ......+.
T Consensus 77 ~~~--~~~~~l~~~~iPvV~i~~~~~~------~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~g 148 (288)
T 3gv0_A 77 PND--PRVRFMTERNMPFVTHGRSDMG------IEHAFHDFDNEAYAYEAVERLAQCGRKRIAVIVPPSRFSFHDHARKG 148 (288)
T ss_dssp TTC--HHHHHHHHTTCCEEEESCCCSS------CCCEEEEECHHHHHHHHHHHHHHTTCCEEEEECCCTTSHHHHHHHHH
T ss_pred CCc--HHHHHHhhCCCCEEEECCcCCC------CCCcEEEeCcHHHHHHHHHHHHHCCCCeEEEEcCCcccchHHHHHHH
Confidence 221 2234455679999976543221 1223456677788888899988889999999975432 34456778
Q ss_pred HHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCC--ceEEEEecChhhHHHHHHHHHHcCCccCC
Q 006567 184 LNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALME--SRVIVLHVSPSLGFQVFSVAKYLGMMGNG 252 (640)
Q Consensus 184 ~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~vivl~~~~~~~~~il~~a~~~gl~~~~ 252 (640)
+++.+++.|+.+.....+... .+..+....+.++.+.. +++|+ +++...+..+++++++.|+.-++
T Consensus 149 f~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP~ 216 (288)
T 3gv0_A 149 FNRGIRDFGLTEFPIDAVTIE--TPLEKIRDFGQRLMQSSDRPDGIV-SISGSSTIALVAGFEAAGVKIGE 216 (288)
T ss_dssp HHHHHHHTTCEECCCCSCCTT--SCHHHHHHHHHHHTTSSSCCSEEE-ESCHHHHHHHHHHHHTTTCCTTT
T ss_pred HHHHHHHcCCCcchhheeccc--cchHHHHHHHHHHHhCCCCCcEEE-EcCcHHHHHHHHHHHHcCCCCCC
Confidence 889999998876533222222 33455556677776543 55555 44556677899999999986443
No 114
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=97.77 E-value=0.00032 Score=70.10 Aligned_cols=210 Identities=10% Similarity=-0.002 Sum_probs=123.6
Q ss_pred CeeEEEEEEeecC-CccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcCcEEEEcCCChH
Q 006567 29 PAVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCST 107 (640)
Q Consensus 29 ~~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aiiGp~~s~ 107 (640)
..+.+||+++|.. ..+......+++.+.++. |+++.+ .++..++....+....++.+++.+||......
T Consensus 58 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~ 127 (332)
T 2hsg_A 58 KKTTTVGVIIPDISNIFYAELARGIEDIATMY--------KYNIIL--SNSDQNQDKELHLLNNMLGKQVDGIIFMSGNV 127 (332)
T ss_dssp C-CCEEEEEEC--CCSHHHHHHHHHHHHHHHH--------TCEEEE--EECCSHHHHHHHHHHHTSCCSSCCEEECCSSC
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHc--------CCEEEE--EeCCCChHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 3467899999863 333345566666666652 555544 34445554444555566667888766533221
Q ss_pred HHHHHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcC---CCCcccHHHH
Q 006567 108 VAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDN---EYGRNGVSAL 184 (640)
Q Consensus 108 ~~~~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~~~---~~g~~~~~~~ 184 (640)
.... ...+...++|+|......+ + +.+..+.......+..++++|...|.++++++.... .......+.|
T Consensus 128 ~~~~-~~~l~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~Gf 200 (332)
T 2hsg_A 128 TEEH-VEELKKSPVPVVLAASIES---T---NQIPSVTIDYEQAAFDAVQSLIDSGHKNIAFVSGTLEEPINHAKKVKGY 200 (332)
T ss_dssp CHHH-HHHHTTSSSCEEEESCCCS---C---TTSCEEEECHHHHHHHHHHHHHTTTCSCEEEEESCTTSHHHHTTHHHHH
T ss_pred CHHH-HHHHHhCCCCEEEEccccC---C---CCCCEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCcccCccHHHHHHHH
Confidence 1222 3344567999998644322 1 112234566677778888888888999999998543 2345667889
Q ss_pred HHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcC--CceEEEEecChhhHHHHHHHHHHcCCccCC-eEEEEe
Q 006567 185 NDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNG-YVWIAT 258 (640)
Q Consensus 185 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~vivl~~~~~~~~~il~~a~~~gl~~~~-~~~i~~ 258 (640)
++.+++.|+.+.....+... .+..+-...++++.+. .+++|+. .+...+..+++++++.|+.-++ ...++-
T Consensus 201 ~~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~ai~~-~nd~~A~g~~~al~~~G~~vP~disvvg~ 274 (332)
T 2hsg_A 201 KRALTESGLPVRDSYIVEGD--YTYDSGIEAVEKLLEEDEKPTAIFV-GTDEMALGVIHGAQDRGLNVPNDLEIIGF 274 (332)
T ss_dssp HHHHHTTTCCCCGGGEEECC--SSHHHHHHHHHHHHHSSSCCSEEEE-SSHHHHHHHHHHHHHTTCCHHHHCEEEEE
T ss_pred HHHHHHcCCCCChheEEeCC--CCHHHHHHHHHHHHcCCCCCeEEEE-CChHHHHHHHHHHHHcCCCCCCCeEEEEE
Confidence 99999988754311111111 1233344455555544 4666664 4556677899999999985332 334443
No 115
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=97.75 E-value=0.0014 Score=63.38 Aligned_cols=205 Identities=10% Similarity=0.007 Sum_probs=120.4
Q ss_pred CeeEEEEEEeecC-CccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcCcEEEEcCCChH
Q 006567 29 PAVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCST 107 (640)
Q Consensus 29 ~~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aiiGp~~s~ 107 (640)
..+-+||+++|.. ..+-.....+++.+.++ .|+++.+ .++..++..-.+....+..+++.+||-.....
T Consensus 5 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~~~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~ 74 (276)
T 3jy6_A 5 QSSKLIAVIVANIDDYFSTELFKGISSILES--------RGYIGVL--FDANADIEREKTLLRAIGSRGFDGLILQSFSN 74 (276)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHHHHHHHHHT--------TTCEEEE--EECTTCHHHHHHHHHHHHTTTCSEEEEESSCC
T ss_pred CCCcEEEEEeCCCCchHHHHHHHHHHHHHHH--------CCCEEEE--EeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc
Confidence 4567899999974 22222334444444443 2555554 44555665555566667777887766433322
Q ss_pred HHHHHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCC-C--CcccHHHH
Q 006567 108 VAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNE-Y--GRNGVSAL 184 (640)
Q Consensus 108 ~~~~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~~~~-~--g~~~~~~~ 184 (640)
......+...++|+|......+ +.. +-.+.......++.++++|...|.++++++..... . .....+.|
T Consensus 75 --~~~~~~l~~~~iPvV~i~~~~~---~~~---~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~gf 146 (276)
T 3jy6_A 75 --PQTVQEILHQQMPVVSVDREMD---ACP---WPQVVTDNFEAAKAATTAFRQQGYQHVVVLTSELELSRTRQERYRGI 146 (276)
T ss_dssp --HHHHHHHHTTSSCEEEESCCCT---TCS---SCEEECCHHHHHHHHHHHHHTTTCCEEEEEEECSTTCHHHHHHHHHH
T ss_pred --HHHHHHHHHCCCCEEEEecccC---CCC---CCEEEEChHHHHHHHHHHHHHcCCCeEEEEecCCCCCchHHHHHHHH
Confidence 3445556678999998644322 111 22355677888888899998899999999986543 2 23455667
Q ss_pred HHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhc-CCceEEEEecChhhHHHHHHHHHHcCCccCCeEEEE
Q 006567 185 NDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVAL-MESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIA 257 (640)
Q Consensus 185 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~vivl~~~~~~~~~il~~a~~~gl~~~~~~~i~ 257 (640)
++.+++.+. +. +...............+.+.. ..+++|+ +++...+..+++++++.|+.-++-+-+.
T Consensus 147 ~~~l~~~~~-~~----~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vi 214 (276)
T 3jy6_A 147 LAAAQDVDV-LE----VSESSYNHSEVHQRLTQLITQNDQKTVAF-ALKERWLLEFFPNLIISGLIDNQTVTAT 214 (276)
T ss_dssp HTTCSEEEE-EE----ECSSSCCHHHHHHHHHHHHHSSSSCEEEE-ESSHHHHHHHSHHHHHSSSCCSSSEEEE
T ss_pred HHHHHhCCc-EE----EeccccCCcHHHHHHHHHHhcCCCCcEEE-EeCcHHHHHHHHHHHHcCCCCCCcEEEE
Confidence 777766643 21 111100112234444444443 3455554 4556677789999999998755434333
No 116
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=97.72 E-value=0.00027 Score=69.09 Aligned_cols=210 Identities=10% Similarity=0.024 Sum_probs=125.4
Q ss_pred CeeEEEEEEeecC-CccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcCcEEEEcCCChH
Q 006567 29 PAVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCST 107 (640)
Q Consensus 29 ~~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aiiGp~~s~ 107 (640)
...-+||+++|.. ..+-.....+++.+.++ .|+++. +.++..++....+....+..+++.+||-.....
T Consensus 6 ~~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~ 75 (291)
T 3egc_A 6 KRSNVVGLIVSDIENVFFAEVASGVESEARH--------KGYSVL--LANTAEDIVREREAVGQFFERRVDGLILAPSEG 75 (291)
T ss_dssp -CCCEEEEEESCTTSHHHHHHHHHHHHHHHH--------TTCEEE--EEECTTCHHHHHHHHHHHHHTTCSEEEECCCSS
T ss_pred CCCcEEEEEECCCcchHHHHHHHHHHHHHHH--------CCCEEE--EEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 3457899999874 22223445566555555 255554 445556666666666677777888777533322
Q ss_pred HHHHHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcC--CCCcccHHHHH
Q 006567 108 VAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDN--EYGRNGVSALN 185 (640)
Q Consensus 108 ~~~~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~~~--~~g~~~~~~~~ 185 (640)
.......+...++|+|......+ + +.+..+.......++.++++|...|.++++++.... .......+.++
T Consensus 76 -~~~~~~~~~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~ 148 (291)
T 3egc_A 76 -EHDYLRTELPKTFPIVAVNRELR---I---PGCGAVLSENVRGARTAVEYLIARGHTRIGAIVGSAGLMTSRERLKGFR 148 (291)
T ss_dssp -CCHHHHHSSCTTSCEEEESSCCC---C---TTCEEEEECHHHHHHHHHHHHHHTTCCSEEEECSCTTSHHHHHHHHHHH
T ss_pred -ChHHHHHhhccCCCEEEEecccC---C---CCCCEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCCCCcCHHHHHHHHH
Confidence 23345566778999998654332 1 223455677788888889998888999999997543 23445567888
Q ss_pred HHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhc--CCceEEEEecChhhHHHHHHHHHHcCCccCC-eEEEEe
Q 006567 186 DKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVAL--MESRVIVLHVSPSLGFQVFSVAKYLGMMGNG-YVWIAT 258 (640)
Q Consensus 186 ~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~vivl~~~~~~~~~il~~a~~~gl~~~~-~~~i~~ 258 (640)
+.+++.|+.+......... .+.......+.++.+ ..+++|+ +.+...+..+++++++.|+.-++ ...++.
T Consensus 149 ~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vvg~ 221 (291)
T 3egc_A 149 AAMSAAGLPVRQEWIAAGG--VRADNGRDGAIKVLTGADRPTALL-TSSHRITEGAMQALNVLGLRYGPDVEIVSF 221 (291)
T ss_dssp HHHHHTTCCCCGGGEEC--------CCHHHHHHHHTC-CCCSEEE-ESSHHHHHHHHHHHHHHTCCBTTTBEEEEE
T ss_pred HHHHHcCCCCCHHHeEeCC--CChhHHHHHHHHHHhCCCCCcEEE-ECCcHHHHHHHHHHHHcCCCCCCceEEEEe
Confidence 8898888654311111111 111122233444443 3466655 45556677899999999987443 334443
No 117
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=97.71 E-value=0.0019 Score=63.73 Aligned_cols=207 Identities=8% Similarity=-0.026 Sum_probs=127.2
Q ss_pred eEEEEEEeecC-CccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcCcEEEEc-CCChHH
Q 006567 31 VVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIG-PQCSTV 108 (640)
Q Consensus 31 ~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aiiG-p~~s~~ 108 (640)
..+||+++|.. ..+-.....+++.+.++. |+++.+ .++..++..-.+....++.+++.+||- |.....
T Consensus 2 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~--~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~ 71 (313)
T 3m9w_A 2 EVKIGMAIDDLRLERWQKDRDIFVKKAESL--------GAKVFV--QSANGNEETQMSQIENMINRGVDVLVIIPYNGQV 71 (313)
T ss_dssp -CEEEEEESCCSSSTTHHHHHHHHHHHHHT--------SCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEEECSSTTS
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHHc--------CCEEEE--ECCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhh
Confidence 35799999963 444456677777777663 555544 455667766666777778888887664 443333
Q ss_pred HHHHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHH-hcCCcEEEEEEEcCC--CCcccHHHHH
Q 006567 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVS-YYGWNAVSVIFVDNE--YGRNGVSALN 185 (640)
Q Consensus 109 ~~~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~-~~~w~~v~ii~~~~~--~g~~~~~~~~ 185 (640)
.......+...++|+|......+. ... ...+.......++.++++|. ..|-++++++..... ......+.++
T Consensus 72 ~~~~~~~~~~~~iPvV~~~~~~~~---~~~--~~~V~~D~~~~g~~a~~~L~~~~G~~~i~~i~g~~~~~~~~~R~~Gf~ 146 (313)
T 3m9w_A 72 LSNVVKEAKQEGIKVLAYDRMIND---ADI--DFYISFDNEKVGELQAKALVDIVPQGNYFLMGGSPVDNNAKLFRAGQM 146 (313)
T ss_dssp CHHHHHHHHTTTCEEEEESSCCTT---SCC--SEEEEECHHHHHHHHHHHHHHHCSSEEEEEEESCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHCCCeEEEECCcCCC---CCc--eEEEecCHHHHHHHHHHHHHHhCCCCcEEEEECCCCCccHHHHHHHHH
Confidence 334455567789999986543322 111 13455677778888888877 889999999974322 2334567788
Q ss_pred HHHhhc----CeEEEEeeccCCCCCCChhHHHHHHHHHhc---CCceEEEEecChhhHHHHHHHHHHcCCccCCeEEEE
Q 006567 186 DKLAER----RCRISYKSGIPPESGVNTGYVMDLLVKVAL---MESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIA 257 (640)
Q Consensus 186 ~~~~~~----g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~---~~~~vivl~~~~~~~~~il~~a~~~gl~~~~~~~i~ 257 (640)
+.+++. ++.+....... . .+.......++++.+ ..+++|+. .+...+..+++++++.|+. .+...++
T Consensus 147 ~~l~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~l~~~~~~~~ai~~-~~d~~a~g~~~al~~~G~~-~di~vig 220 (313)
T 3m9w_A 147 KVLKPYVDSGKIKVVGDQWVD-G--WLPENALKIMENALTANNNKIDAVVA-SNDATAGGAIQALSAQGLS-GKVAISG 220 (313)
T ss_dssp HHHHHHHHTTSEEEEEEEECG-G--GCHHHHHHHHHHHHHHTTTCCCEEEE-SSHHHHHHHHHHHHTTTCT-TTSEECC
T ss_pred HHHHhhccCCCEEEEeeccCC-C--cCHHHHHHHHHHHHHhCCCCeeEEEE-CCCchHHHHHHHHHHcCCC-CCcEEEe
Confidence 888776 56665433211 1 123344444555443 24565544 4556677899999999986 3333333
No 118
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=97.71 E-value=0.00015 Score=70.40 Aligned_cols=204 Identities=9% Similarity=-0.009 Sum_probs=121.1
Q ss_pred eeEEEEEEeecC-CccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcCcEEEEcCCChHH
Q 006567 30 AVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTV 108 (640)
Q Consensus 30 ~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aiiGp~~s~~ 108 (640)
.+-+||+++|.. ..+-.....+++.+.++. |+++.+...+ ++..-.+....+..+++.+|| ......
T Consensus 4 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~~~~---~~~~~~~~~~~l~~~~vdgiI-~~~~~~ 71 (280)
T 3gyb_A 4 RTQLIAVLIDDYSNPWFIDLIQSLSDVLTPK--------GYRLSVIDSL---TSQAGTDPITSALSMRPDGII-IAQDIP 71 (280)
T ss_dssp CCCEEEEEESCTTSGGGHHHHHHHHHHHGGG--------TCEEEEECSS---SSCSSSCHHHHHHTTCCSEEE-EESCC-
T ss_pred ccCEEEEEeCCCCChHHHHHHHHHHHHHHHC--------CCEEEEEeCC---CchHHHHHHHHHHhCCCCEEE-ecCCCC
Confidence 456899999864 334345566666555542 5666655444 332223344556677888888 332222
Q ss_pred HHHHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCCCCcccHHHHHHHH
Q 006567 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKL 188 (640)
Q Consensus 109 ~~~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~~~~~g~~~~~~~~~~~ 188 (640)
...+.. .++|+|......+ .+...+ .+.......++.++++|...|.++++++...........+.|++.+
T Consensus 72 ~~~~~~----~~iPvV~~~~~~~--~~~~~~---~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~R~~gf~~~l 142 (280)
T 3gyb_A 72 DFTVPD----SLPPFVIAGTRIT--QASTHD---SVANDDFRGAEIATKHLIDLGHTHIAHLRVGSGAGLRRFESFEATM 142 (280)
T ss_dssp -----------CCCEEEESCCCS--SSCSTT---EEEECHHHHHHHHHHHHHHTTCCSEEEECCSSHHHHHHHHHHHHHH
T ss_pred hhhHhh----cCCCEEEECCCCC--CCCCCC---EEEechHHHHHHHHHHHHHCCCCeEEEEeCCCchHHHHHHHHHHHH
Confidence 222222 8999998654331 111222 3456777788888999888899999999865433555677888999
Q ss_pred hhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcC--CceEEEEecChhhHHHHHHHHHHcCCccCC-eEEEEe
Q 006567 189 AERRCRISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNG-YVWIAT 258 (640)
Q Consensus 189 ~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~vivl~~~~~~~~~il~~a~~~gl~~~~-~~~i~~ 258 (640)
++.|+.+.... +... .+.......++++.+. .+++|+. .+...+..+++++++.|+.-++ ...++.
T Consensus 143 ~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~di~vvg~ 211 (280)
T 3gyb_A 143 RAHGLEPLSND-YLGP--AVEHAGYTETLALLKEHPEVTAIFS-SNDITAIGALGAARELGLRVPEDLSIIGY 211 (280)
T ss_dssp HHTTCCCEECC-CCSC--CCHHHHHHHHHHHHHHCTTCCEEEE-SSHHHHHHHHHHHHHHTCCTTTTCEEEEE
T ss_pred HHcCcCCCccc-ccCC--CCHHHHHHHHHHHHhCCCCCCEEEE-CChHHHHHHHHHHHHcCCCCCCeeEEEEE
Confidence 99887765432 2222 2344444555555443 3566554 4556677899999999986443 334443
No 119
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=97.67 E-value=0.00035 Score=69.69 Aligned_cols=201 Identities=11% Similarity=0.021 Sum_probs=120.2
Q ss_pred eeEEEEEEeecC-CccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcCcEEEEcCCChHH
Q 006567 30 AVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTV 108 (640)
Q Consensus 30 ~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aiiGp~~s~~ 108 (640)
.+.+||+++|.. ..+......+++.+.++ .|+++.+ .++..++.........++.+++.+|| ......
T Consensus 59 ~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI-~~~~~~ 127 (330)
T 3ctp_A 59 NSKTIGLMVPNISNPFFNQMASVIEEYAKN--------KGYTLFL--CNTDDDKEKEKTYLEVLQSHRVAGII-ASRSQC 127 (330)
T ss_dssp -CCEEEEEESCTTSHHHHHHHHHHHHHHHH--------TTCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEE-EETCCC
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHH--------CCCEEEE--EeCCCChHHHHHHHHHHHhCCCCEEE-ECCCCC
Confidence 457899999864 33333445566655554 2566554 45556666655666677778888888 432221
Q ss_pred HHHHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCC--CCcccHHHHHH
Q 006567 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNE--YGRNGVSALND 186 (640)
Q Consensus 109 ~~~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~~~~--~g~~~~~~~~~ 186 (640)
. ..+...++|+|......+. .. ..+.......+..++++|...|.+++++|..... ......+.|++
T Consensus 128 ~----~~l~~~~iPvV~~~~~~~~----~~---~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~ 196 (330)
T 3ctp_A 128 E----DEYANIDIPVVAFENHILD----NI---ITISSDNYNGGRMAFDHLYEKGCRKILHIKGPEVFEATELRYKGFLD 196 (330)
T ss_dssp S----GGGTTCCSCEEEESSCCCT----TS---CEEEECHHHHHHHHHHHHHHTTCCSEEEEECCTTCHHHHHHHHHHHH
T ss_pred H----HHHHhcCCCEEEEeccCCC----CC---CEEEeCHHHHHHHHHHHHHHCCCCeEEEEeCCccCccHHHHHHHHHH
Confidence 1 2345679999986543221 12 2345566667788888888889999999986432 34456778889
Q ss_pred HHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhc-CCceEEEEecChhhHHHHHHHHHHcCCccCCeEEE
Q 006567 187 KLAERRCRISYKSGIPPESGVNTGYVMDLLVKVAL-MESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWI 256 (640)
Q Consensus 187 ~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~vivl~~~~~~~~~il~~a~~~gl~~~~~~~i 256 (640)
.+++.|+.+. ...+... .+..+-...++++.+ ..+++|+.. +...+..+++++++.|+.-++-+-+
T Consensus 197 al~~~g~~~~-~~~~~~~--~~~~~~~~~~~~ll~~~~~~ai~~~-~d~~A~g~~~al~~~G~~vP~disv 263 (330)
T 3ctp_A 197 GARAKDLEID-FIEFQHD--FQVKMLEEDINSMKDIVNYDGIFVF-NDIAAATVMRALKKRGVSIPQEVQI 263 (330)
T ss_dssp HHHHTTCCCE-EEECSSS--CCGGGGGCCCTTGGGGGGSSEEEES-SHHHHHHHHHHHHHTTCCTTTTCEE
T ss_pred HHHHcCCCcc-eeEEcCC--CCHHHHHHHHHHHhcCCCCcEEEEC-CHHHHHHHHHHHHHcCCCCCCCeEE
Confidence 9999987654 2222211 111111222333333 346766654 4456778899999999865433333
No 120
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=97.66 E-value=0.002 Score=62.78 Aligned_cols=206 Identities=12% Similarity=0.045 Sum_probs=121.2
Q ss_pred CeeEEEEEEeecCCccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcCcEEEEcCCChHH
Q 006567 29 PAVVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTV 108 (640)
Q Consensus 29 ~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aiiGp~~s~~ 108 (640)
..+-+||++++.+..+-.....+++.+.++. |+++.+...+...+ -.+....++.++|.+||-......
T Consensus 10 ~~~~~Igvi~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~~~~~~~~---~~~~~~~l~~~~vdgiIi~~~~~~ 78 (289)
T 3k9c_A 10 ASSRLLGVVFELQQPFHGDLVEQIYAAATRR--------GYDVMLSAVAPSRA---EKVAVQALMRERCEAAILLGTRFD 78 (289)
T ss_dssp ---CEEEEEEETTCHHHHHHHHHHHHHHHHT--------TCEEEEEEEBTTBC---HHHHHHHHTTTTEEEEEEETCCCC
T ss_pred CCCCEEEEEEecCCchHHHHHHHHHHHHHHC--------CCEEEEEeCCCCHH---HHHHHHHHHhCCCCEEEEECCCCC
Confidence 3456899999444433334455555555552 56666554443322 234455666778887775322222
Q ss_pred HHHHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCC-CCcccHHHHHHH
Q 006567 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNE-YGRNGVSALNDK 187 (640)
Q Consensus 109 ~~~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~~~~-~g~~~~~~~~~~ 187 (640)
...+.. +.. ++|+|......+ + +.+-.+.......++.++++|...|.++++++..... ......+.|++.
T Consensus 79 ~~~~~~-~~~-~iPvV~i~~~~~---~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~R~~Gf~~a 150 (289)
T 3k9c_A 79 TDELGA-LAD-RVPALVVARASG---L---PGVGAVRGDDVAGITLAVDHLTELGHRNIAHIDGADAPGGADRRAGFLAA 150 (289)
T ss_dssp HHHHHH-HHT-TSCEEEESSCCS---S---TTSEEEEECHHHHHHHHHHHHHHTTCCSEEEECCTTSTTHHHHHHHHHHH
T ss_pred HHHHHH-HHc-CCCEEEEcCCCC---C---CCCCEEEeChHHHHHHHHHHHHHCCCCcEEEEeCCCCccHHHHHHHHHHH
Confidence 233333 344 999998654322 1 2234456677778888889888889999999975432 334556788899
Q ss_pred HhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcC--CceEEEEecChhhHHHHHHHHHHcCCccCC-eEEEE
Q 006567 188 LAERRCRISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNG-YVWIA 257 (640)
Q Consensus 188 ~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~vivl~~~~~~~~~il~~a~~~gl~~~~-~~~i~ 257 (640)
+++.|+.+.... +... .+...-...++++.+. .+++|+ +++...+..+++++++.|+.-++ ...++
T Consensus 151 l~~~g~~~~~~~-~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP~di~vig 219 (289)
T 3k9c_A 151 MDRHGLSASATV-VTGG--TTETEGAEGMHTLLEMPTPPTAVV-AFNDRCATGVLDLLVRSGRDVPADISVVG 219 (289)
T ss_dssp HHHTTCGGGEEE-ECCC--SSHHHHHHHHHHHHTSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEEE
T ss_pred HHHCCCCCCccE-EECC--CCHHHHHHHHHHHHcCCCCCCEEE-ECChHHHHHHHHHHHHcCCCCCCceEEEE
Confidence 998887532211 1211 2344455566666553 455554 34556677899999999987543 33443
No 121
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=97.63 E-value=0.00078 Score=65.89 Aligned_cols=209 Identities=14% Similarity=0.070 Sum_probs=123.6
Q ss_pred EEEEEEeecC-CccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcCcEEEEc-CCChH--
Q 006567 32 VNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIG-PQCST-- 107 (640)
Q Consensus 32 i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aiiG-p~~s~-- 107 (640)
-+||+++|.. ..+-.....+++.+.++ .|+++.+ .++..++..-.+....++.+++.+||- |..+.
T Consensus 16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~ 85 (298)
T 3tb6_A 16 KTIGVLTTYISDYIFPSIIRGIESYLSE--------QGYSMLL--TSTNNNPDNERRGLENLLSQHIDGLIVEPTKSALQ 85 (298)
T ss_dssp CEEEEEESCSSSTTHHHHHHHHHHHHHH--------TTCEEEE--EECTTCHHHHHHHHHHHHHTCCSEEEECCSSTTSC
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHHH--------CCCEEEE--EeCCCChHHHHHHHHHHHHCCCCEEEEeccccccc
Confidence 6899999974 33334556666666655 2565554 455566666666677777888887665 33221
Q ss_pred -HHHHHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCC-CCcccHHHHH
Q 006567 108 -VAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNE-YGRNGVSALN 185 (640)
Q Consensus 108 -~~~~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~~~~-~g~~~~~~~~ 185 (640)
........+...++|+|......+.. . +..+.......++.++++|...|.++++++..... ......+.++
T Consensus 86 ~~~~~~~~~~~~~~iPvV~~~~~~~~~---~---~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~R~~gf~ 159 (298)
T 3tb6_A 86 TPNIGYYLNLEKNGIPFAMINASYAEL---A---APSFTLDDVKGGMMAAEHLLSLGHTHMMGIFKADDTQGVKRMNGFI 159 (298)
T ss_dssp CTTHHHHHHHHHTTCCEEEESSCCTTC---S---SCEEEECHHHHHHHHHHHHHHTTCCSEEEEEESSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHhcCCCEEEEecCcCCC---C---CCEEEeCcHHHHHHHHHHHHHCCCCcEEEEcCCCCccHHHHHHHHH
Confidence 23334455666799999865433211 1 22345677778888899988889999999986433 3334567888
Q ss_pred HHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcC--C--ceEEEEecChhhHHHHHHHHHHcCCccCCeEEEE
Q 006567 186 DKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALM--E--SRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIA 257 (640)
Q Consensus 186 ~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~--~~vivl~~~~~~~~~il~~a~~~gl~~~~~~~i~ 257 (640)
+.+++.|+.+....................+.++.+. . +++|+ +.+...+..+++++++.|+.-++-+-+.
T Consensus 160 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vv 234 (298)
T 3tb6_A 160 QAHRERELFPSPDMIVTFTTEEKESKLLEKVKATLEKNSKHMPTAIL-CYNDEIALKVIDMLREMDLKVPEDMSIV 234 (298)
T ss_dssp HHHHHTTCCCCGGGEEEECHHHHTTHHHHHHHHHHHHTTTSCCSEEE-CSSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHcCCCCCcceEEEecccchhhhHHHHHHHHHhcCCCCCCeEEE-EeCcHHHHHHHHHHHHcCCCCCCceEEE
Confidence 8898888654211111101000011112334444332 2 55554 4455667789999999998654434333
No 122
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=97.62 E-value=0.0032 Score=61.47 Aligned_cols=209 Identities=10% Similarity=0.071 Sum_probs=121.2
Q ss_pred CeeEEEEEEeecC------CccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcCcEEEEc
Q 006567 29 PAVVNVGALFTLD------STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIG 102 (640)
Q Consensus 29 ~~~i~IG~l~~~~------~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aiiG 102 (640)
..+-+||+++|.. ..+-.....+++.+.++ .|+.+. +.++..++....+....+..++|.+||-
T Consensus 5 ~~s~~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a~~--------~g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdGiI~ 74 (295)
T 3hcw_A 5 NQTYKIGLVLKGSEEPIRLNPFYINVLLGISETCNQ--------HGYGTQ--TTVSNNMNDLMDEVYKMIKQRMVDAFIL 74 (295)
T ss_dssp CCSCEEEEECSCCCHHHHSCHHHHHHHHHHHHHHHT--------TTCEEE--ECCCCSHHHHHHHHHHHHHTTCCSEEEE
T ss_pred CCCcEEEEEeecCCcccccChHHHHHHHHHHHHHHH--------CCCEEE--EEcCCCChHHHHHHHHHHHhCCcCEEEE
Confidence 4457899999642 22212334444444333 255553 4455555544444455566678887764
Q ss_pred CCChHHHHHHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCC--CCccc
Q 006567 103 PQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNE--YGRNG 180 (640)
Q Consensus 103 p~~s~~~~~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~~~~--~g~~~ 180 (640)
....... .....+...++|+|......+... ..+..+.......++.++++|...|.++++++..... .....
T Consensus 75 ~~~~~~~-~~~~~l~~~~iPvV~i~~~~~~~~----~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R 149 (295)
T 3hcw_A 75 LYSKEND-PIKQMLIDESMPFIVIGKPTSDID----HQFTHIDNDNILASENLTRHVIEQGVDELIFITEKGNFEVSKDR 149 (295)
T ss_dssp SCCCTTC-HHHHHHHHTTCCEEEESCCCSSGG----GGSCEEEECHHHHHHHHHHHHHHHCCSEEEEEEESSCCHHHHHH
T ss_pred cCcccCh-HHHHHHHhCCCCEEEECCCCcccc----CCceEEecCcHHHHHHHHHHHHHcCCccEEEEcCCccchhHHHH
Confidence 3222111 234445667999998644322110 0123345566777788888888889999999986433 33456
Q ss_pred HHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcC-----CceEEEEecChhhHHHHHHHHHHcCCccCC-eE
Q 006567 181 VSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALM-----ESRVIVLHVSPSLGFQVFSVAKYLGMMGNG-YV 254 (640)
Q Consensus 181 ~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~-----~~~vivl~~~~~~~~~il~~a~~~gl~~~~-~~ 254 (640)
.+.+++.+++.|+.+.... .. .+..+....++++.+. .+++|+ +++...+..+++++++.|+.-++ ..
T Consensus 150 ~~Gf~~al~~~g~~~~~~~-~~----~~~~~~~~~~~~~l~~~~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP~di~ 223 (295)
T 3hcw_A 150 IQGFETVASQFNLDYQIIE-TS----NEREVILNYMQNLHTRLKDPNIKQAII-SLDAMLHLAILSVLYELNIEIPKDVM 223 (295)
T ss_dssp HHHHHHHHHHTTCEEEEEE-EC----SCHHHHHHHHHHHHHHHTCTTSCEEEE-ESSHHHHHHHHHHHHHTTCCTTTTEE
T ss_pred HHHHHHHHHHcCCCeeEEe-cc----CCHHHHHHHHHHHHhhcccCCCCcEEE-ECChHHHHHHHHHHHHcCCCCCCceE
Confidence 7789999999998765221 11 1233333444444332 466654 45556678899999999987544 34
Q ss_pred EEEe
Q 006567 255 WIAT 258 (640)
Q Consensus 255 ~i~~ 258 (640)
.++-
T Consensus 224 vig~ 227 (295)
T 3hcw_A 224 TATF 227 (295)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 4443
No 123
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=97.60 E-value=0.0006 Score=66.47 Aligned_cols=202 Identities=11% Similarity=0.049 Sum_probs=118.9
Q ss_pred CeeEEEEEEeec--CCccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcCcEEEEcCCCh
Q 006567 29 PAVVNVGALFTL--DSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCS 106 (640)
Q Consensus 29 ~~~i~IG~l~~~--~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aiiGp~~s 106 (640)
..+.+||+++|. +..+-.....+++.+.++. |+.+.+...+...+.. .+....+..+++.+||-....
T Consensus 9 ~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~~~~~~~~~~--~~~~~~l~~~~vdgiIi~~~~ 78 (289)
T 3g85_A 9 QSKPTIALYWSSDISVNIISRFLRGLQSKLAKQ--------NYNYNVVICPYKTDCL--HLEKGISKENSFDAAIIANIS 78 (289)
T ss_dssp --CCEEEEEEETTSCGGGHHHHHHHHHHHHHHT--------TTCSEEEEEEECTTCG--GGCGGGSTTTCCSEEEESSCC
T ss_pred CCCceEEEEeccccchHHHHHHHHHHHHHHHHc--------CCeEEEEecCCCchhH--HHHHHHHhccCCCEEEEecCC
Confidence 356789999993 2333345566666665553 3444433322222111 122333455688877754333
Q ss_pred HHHHHHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCC--CCcccHHHH
Q 006567 107 TVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNE--YGRNGVSAL 184 (640)
Q Consensus 107 ~~~~~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~~~~--~g~~~~~~~ 184 (640)
.....+... ...++|+|......+ .+-.+.......++.++++|...|.++++++..... ......+.+
T Consensus 79 ~~~~~~~~~-~~~~iPvV~~~~~~~--------~~~~V~~D~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf 149 (289)
T 3g85_A 79 NYDLEYLNK-ASLTLPIILFNRLSN--------KYSSVNVDNYKMGEKASLLFAKKRYKSAAAILTESLNDAMDNRNKGF 149 (289)
T ss_dssp HHHHHHHHH-CCCSSCEEEESCCCS--------SSEEEEECHHHHHHHHHHHHHHTTCCBCEEEECCCSSHHHHHHHHHH
T ss_pred cccHHHHHh-ccCCCCEEEECCCCC--------CCCEEEeCHHHHHHHHHHHHHHcCCCEEEEEeCCcccccHHHHHHHH
Confidence 333333333 367999998654322 223456677888888899988899999999985432 334567788
Q ss_pred HHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcC--CceEEEEecChhhHHHHHHHHHHcCCccCC
Q 006567 185 NDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNG 252 (640)
Q Consensus 185 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~vivl~~~~~~~~~il~~a~~~gl~~~~ 252 (640)
++.+++.|+.+.....+... .+..+....+.++.+. .+++|+ +.+...+..+++++++.|+.-++
T Consensus 150 ~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~ 216 (289)
T 3g85_A 150 IETCHKNGIKISENHIIAAE--NSIHGGVDAAKKLMKLKNTPKALF-CNSDSIALGVISVLNKRQISIPD 216 (289)
T ss_dssp HHHHHHTTCBCCGGGEEECC--SSHHHHHHHHHHHTTSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCTTT
T ss_pred HHHHHHcCCCCChhheeccC--CCHHHHHHHHHHHHcCCCCCcEEE-EcCCHHHHHHHHHHHHcCCCCCC
Confidence 89999888764321111111 2344555566666654 356555 45556677899999999986543
No 124
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=97.54 E-value=0.00084 Score=65.67 Aligned_cols=208 Identities=11% Similarity=0.015 Sum_probs=120.2
Q ss_pred eeEEEEEEeecC-----CccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcCcEEEEc-C
Q 006567 30 AVVNVGALFTLD-----STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIG-P 103 (640)
Q Consensus 30 ~~i~IG~l~~~~-----~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aiiG-p 103 (640)
.+-+||+++|.. ..+-.....+++.+.++ .|+.+.+...+..... ......+..++|.+||- |
T Consensus 5 ~s~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~~~~~~~~~~---~~~~~~l~~~~vdGiIi~~ 73 (294)
T 3qk7_A 5 RTDAIALAYPSRPRVLNNSTFLEMISWIGIELGK--------RGLDLLLIPDEPGEKY---QSLIHLVETRRVDALIVAH 73 (294)
T ss_dssp CCCEEEEEEESCSGGGSCHHHHHHHHHHHHHHHH--------TTCEEEEEEECTTCCC---HHHHHHHHHTCCSEEEECS
T ss_pred ccceEEEEecCCCccccChhHHHHHHHHHHHHHH--------CCCEEEEEeCCChhhH---HHHHHHHHcCCCCEEEEeC
Confidence 456899999942 22223344555554444 2666766655432121 12233344557876664 3
Q ss_pred CChHHHHHHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCC--CCcccH
Q 006567 104 QCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNE--YGRNGV 181 (640)
Q Consensus 104 ~~s~~~~~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~~~~--~g~~~~ 181 (640)
..... .....+...++|+|......+ . +.+-.+.......+..++++|...|.++++++..... ......
T Consensus 74 ~~~~~--~~~~~l~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~ 145 (294)
T 3qk7_A 74 TQPED--FRLQYLQKQNFPFLALGRSHL---P---KPYAWFDFDNHAGASLAVKRLLELGHQRIAFVSTDARISYVDQRL 145 (294)
T ss_dssp CCSSC--HHHHHHHHTTCCEEEESCCCC---S---SCCEEEEECHHHHHHHHHHHHHHTTCCCEEEEEESSCCHHHHHHH
T ss_pred CCCCh--HHHHHHHhCCCCEEEECCCCC---C---CCCCEEEcChHHHHHHHHHHHHHCCCceEEEEeCCcccchHHHHH
Confidence 32222 234455667999998654321 1 1223456677788888888888889999999986532 333557
Q ss_pred HHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcC--CceEEEEecChhhHHHHHHHHHHcCCccCC-eEEEEe
Q 006567 182 SALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNG-YVWIAT 258 (640)
Q Consensus 182 ~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~vivl~~~~~~~~~il~~a~~~gl~~~~-~~~i~~ 258 (640)
+.+++.+++.|+.+.....+... .+...-...++++.+. .+++|+ +++...+..+++++++.|+.-++ ...++-
T Consensus 146 ~Gf~~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~nd~~A~g~~~al~~~G~~vP~di~vig~ 222 (294)
T 3qk7_A 146 QGYVQTMSEAGLMPLAGYLQKAD--PTRPGGYLAASRLLALEVPPTAII-TDCNMLGDGVASALDKAGLLGGEGISLIAY 222 (294)
T ss_dssp HHHHHHHHTTTCCCCTTCEEEEC--SSHHHHHHHHHHHHHSSSCCSEEE-ESSHHHHHHHHHHHHHTTCSSTTSCEEEEE
T ss_pred HHHHHHHHHCCCCCChhHeecCC--CCHHHHHHHHHHHHcCCCCCcEEE-ECCHHHHHHHHHHHHHcCCCCCCceEEEee
Confidence 78889999888753211101111 1234444455555543 456554 44556677899999999987543 444444
Q ss_pred C
Q 006567 259 D 259 (640)
Q Consensus 259 ~ 259 (640)
+
T Consensus 223 D 223 (294)
T 3qk7_A 223 D 223 (294)
T ss_dssp T
T ss_pred c
Confidence 3
No 125
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=97.53 E-value=0.0014 Score=64.41 Aligned_cols=207 Identities=11% Similarity=0.012 Sum_probs=122.6
Q ss_pred CeeEEEEEEeecC-CccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcCcEEEEcCCChH
Q 006567 29 PAVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCST 107 (640)
Q Consensus 29 ~~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aiiGp~~s~ 107 (640)
..+-+||+++|.. ..+-.....+++.+.++. |+++.+ .++..++..-.+....+..++|.+||-.....
T Consensus 13 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~ 82 (303)
T 3kke_A 13 SRSGTIGLIVPDVNNAVFADMFSGVQMAASGH--------STDVLL--GQIDAPPRGTQQLSRLVSEGRVDGVLLQRRED 82 (303)
T ss_dssp ----CEEEEESCTTSTTHHHHHHHHHHHHHHT--------TCCEEE--EECCSTTHHHHHHHHHHHSCSSSEEEECCCTT
T ss_pred CCCCEEEEEeCCCcChHHHHHHHHHHHHHHHC--------CCEEEE--EeCCCChHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 3457899999964 333345566666666552 454543 44555555555556667777888776533222
Q ss_pred HHH-HHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCC--CCcccHHHH
Q 006567 108 VAH-IVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNE--YGRNGVSAL 184 (640)
Q Consensus 108 ~~~-~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~~~~--~g~~~~~~~ 184 (640)
... .+..+.. ++|+|......+. .. -.+.......++.++++|...|.++++++..... ......+.+
T Consensus 83 ~~~~~~~~l~~--~iPvV~i~~~~~~----~~---~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf 153 (303)
T 3kke_A 83 FDDDMLAAVLE--GVPAVTINSRVPG----RV---GSVILDDQKGGGIATEHLITLGHSRIAFISGTAIHDTAQRRKEGY 153 (303)
T ss_dssp CCHHHHHHHHT--TSCEEEESCCCTT----CC---CEEEECHHHHHHHHHHHHHHTTCCSEEEEESCSSCHHHHHHHHHH
T ss_pred CcHHHHHHHhC--CCCEEEECCcCCC----CC---CEEEECcHHHHHHHHHHHHHCCCCeEEEEeCCCcCccHHHHHHHH
Confidence 222 3444444 9999986543332 12 2345667777888888888889999999975432 334557788
Q ss_pred HHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHH-----hcC--CceEEEEecChhhHHHHHHHHHHcCCccCC-eEEE
Q 006567 185 NDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKV-----ALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNG-YVWI 256 (640)
Q Consensus 185 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l-----~~~--~~~vivl~~~~~~~~~il~~a~~~gl~~~~-~~~i 256 (640)
++.+++.|+.+......... .+...-...++++ .+. .+++|+. ++...+..+++++++.|+.-++ ...+
T Consensus 154 ~~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~l~~~~~~~ai~~-~nd~~A~g~~~al~~~G~~vP~di~vi 230 (303)
T 3kke_A 154 LETLASAGLRSEAAWVVDAG--WEADAGSAALNTLYRGANLGKPDGPTAVVV-ASVNAAVGALSTALRLGLRVPEDLSIV 230 (303)
T ss_dssp HHHHHHTTCCCCGGGEEECC--SSHHHHHHHHHHHHHHHCTTSTTSCSEEEE-SSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHHcCCCCCcceEEecC--CChHHHHHHHHHhcchhhhcCCCCCcEEEE-CCHHHHHHHHHHHHHcCCCCCCceEEE
Confidence 89999888764311111111 2244445556666 443 3565544 4556677899999999986543 3444
Q ss_pred E
Q 006567 257 A 257 (640)
Q Consensus 257 ~ 257 (640)
+
T Consensus 231 g 231 (303)
T 3kke_A 231 G 231 (303)
T ss_dssp E
T ss_pred E
Confidence 4
No 126
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=97.53 E-value=0.0012 Score=66.24 Aligned_cols=207 Identities=8% Similarity=-0.011 Sum_probs=123.1
Q ss_pred eeEEEEEEeecC-CccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcCcEEEEcCCChHH
Q 006567 30 AVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTV 108 (640)
Q Consensus 30 ~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aiiGp~~s~~ 108 (640)
..-+||+++|.. ..+-.....+++.+.++ .|+.+. +.++..++..-.+....++.+++.+||-......
T Consensus 67 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~--~~~~~~~~~~~~~~i~~l~~~~vdGiIi~~~~~~ 136 (344)
T 3kjx_A 67 RVNLVAVIIPSLSNMVFPEVLTGINQVLED--------TELQPV--VGVTDYLPEKEEKVLYEMLSWRPSGVIIAGLEHS 136 (344)
T ss_dssp CCSEEEEEESCSSSSSHHHHHHHHHHHHTS--------SSSEEE--EEECTTCHHHHHHHHHHHHTTCCSEEEEECSCCC
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHHHHHH--------CCCEEE--EEeCCCCHHHHHHHHHHHHhCCCCEEEEECCCCC
Confidence 456899999864 33323344444444433 256654 4455566666566666777777776654222111
Q ss_pred HHHHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcC---CCCcccHHHHH
Q 006567 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDN---EYGRNGVSALN 185 (640)
Q Consensus 109 ~~~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~~~---~~g~~~~~~~~ 185 (640)
. .....+...++|+|...... .. +....+.......+..++++|...|.++++++.... .......+.|+
T Consensus 137 ~-~~~~~l~~~~iPvV~i~~~~---~~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~Gf~ 209 (344)
T 3kjx_A 137 E-AARAMLDAAGIPVVEIMDSD---GK---PVDAMVGISHRRAGREMAQAILKAGYRRIGFMGTKMPLDYRARKRFEGFT 209 (344)
T ss_dssp H-HHHHHHHHCSSCEEEEEECS---SC---CSSEEEEECHHHHHHHHHHHHHHHTCCSCCEEESSTTTCHHHHHHHHHHH
T ss_pred H-HHHHHHHhCCCCEEEEeCCC---CC---CCCCEEEECcHHHHHHHHHHHHHCCCCeEEEEecCcccCccHHHHHHHHH
Confidence 1 33445566799999863211 11 222345667777788888888888999999997543 23345567888
Q ss_pred HHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhc--CCceEEEEecChhhHHHHHHHHHHcCCccCCeEEE
Q 006567 186 DKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVAL--MESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWI 256 (640)
Q Consensus 186 ~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~vivl~~~~~~~~~il~~a~~~gl~~~~~~~i 256 (640)
+.+++.|+.+.....+... .+...-...+.++.+ ..+++|+ +++...+..+++++++.|+.-++-+-+
T Consensus 210 ~al~~~g~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~ai~-~~nd~~A~g~~~al~~~g~~vP~disv 279 (344)
T 3kjx_A 210 EVLGKNGVEIEDREFYSGG--SALAKGREMTQAMLERSPDLDFLY-YSNDMIAAGGLLYLLEQGIDIPGQIGL 279 (344)
T ss_dssp HHHHHTTCCCSCEEECSSC--CCHHHHHHHHHHHHHHSTTCCEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEE
T ss_pred HHHHHcCCCCChheEEeCC--CCHHHHHHHHHHHHhcCCCCCEEE-ECCHHHHHHHHHHHHHcCCCCCCceEE
Confidence 9999988765432222211 223333344444443 2466655 445566778999999999875443333
No 127
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=97.48 E-value=0.0033 Score=63.13 Aligned_cols=208 Identities=10% Similarity=0.011 Sum_probs=116.6
Q ss_pred eeEEEEEEeecC-CccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcCcEEEEcCCChHH
Q 006567 30 AVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTV 108 (640)
Q Consensus 30 ~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aiiGp~~s~~ 108 (640)
.+-+||+++|.. ..+-.....+++.+.++ .|+++.+ .++..++....+....++.+++.+||-......
T Consensus 65 ~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 134 (348)
T 3bil_A 65 RSNTIGVIVPSLINHYFAAMVTEIQSTASK--------AGLATII--TNSNEDATTMSGSLEFLTSHGVDGIICVPNEEC 134 (348)
T ss_dssp ---CEEEEESCSSSHHHHHHHHHHHHHHHH--------TTCCEEE--EECTTCHHHHHHHHHHHHHTTCSCEEECCCGGG
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHH--------cCCEEEE--EeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 356799999863 32223445555555544 2455544 344556655555566667778887665333222
Q ss_pred HHHHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCC--CCcccHHHHHH
Q 006567 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNE--YGRNGVSALND 186 (640)
Q Consensus 109 ~~~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~~~~--~g~~~~~~~~~ 186 (640)
.. ....+...++|+|......+. .... ..+.......+..++++|...|.+++++|..... ......+.|++
T Consensus 135 ~~-~~~~l~~~~iPvV~i~~~~~~--~~~~---~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~ 208 (348)
T 3bil_A 135 AN-QLEDLQKQGMPVVLVDRELPG--DSTI---PTATSNPQPGIAAAVELLAHNNALPIGYLSGPMDTSTGRERLEDFKA 208 (348)
T ss_dssp HH-HHHHHHHC-CCEEEESSCCSC--C-CC---CEEEEECHHHHHHHHHHHHHTTCCSEEEECCCTTSHHHHHHHHHHHH
T ss_pred hH-HHHHHHhCCCCEEEEcccCCC--CCCC---CEEEeChHHHHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHHHH
Confidence 22 233445579999986443221 0112 2344566666788888888889999999975422 33455678888
Q ss_pred HHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecChhhHHHHHHHHHHcCCccCC-eEEEEe
Q 006567 187 KLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNG-YVWIAT 258 (640)
Q Consensus 187 ~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~il~~a~~~gl~~~~-~~~i~~ 258 (640)
.+++.|+..... +... .+..+-...++++.+... ..|++++...+..+++++++.|+.-++ ...++-
T Consensus 209 al~~~g~~~~~v--~~~~--~~~~~~~~~~~~ll~~~~-~ai~~~nD~~A~g~~~al~~~G~~vP~disvvG~ 276 (348)
T 3bil_A 209 ACANSKIGEQLV--FLGG--YEQSVGFEGATKLLDQGA-KTLFAGDSMMTIGVIEACHKAGLVIGKDVSVIGF 276 (348)
T ss_dssp HHHHTTCCCCEE--ECCC--SSHHHHHHHHHHHHHTTC-SEEEESSHHHHHHHHHHHHHTTCCBTTTBEEEEE
T ss_pred HHHHcCcCccEE--EcCC--CCHHHHHHHHHHHHcCCC-CEEEEcChHHHHHHHHHHHHcCCCCCCCeEEEEe
Confidence 998888632111 1111 123334445555554432 234455666677899999999986443 334443
No 128
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=97.47 E-value=0.01 Score=56.96 Aligned_cols=204 Identities=6% Similarity=0.051 Sum_probs=115.5
Q ss_pred EEEEEeecC-CccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcCcEEEEc-CCChHHHH
Q 006567 33 NVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIG-PQCSTVAH 110 (640)
Q Consensus 33 ~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aiiG-p~~s~~~~ 110 (640)
+||++.|.. ..+-.....+++.+.++. |+++.+ .++..++..-.+....++.++|.+||- |.......
T Consensus 3 ~Igvi~~~~~~~f~~~~~~gi~~~~~~~--------g~~~~~--~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~ 72 (271)
T 2dri_A 3 TIALVVSTLNNPFFVSLKDGAQKEADKL--------GYNLVV--LDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVG 72 (271)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHHH--------TCEEEE--EECTTCHHHHHHHHHHHTTTTEEEEEECCSSTTTTH
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHHHHc--------CcEEEE--eCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHH
Confidence 589998863 322234455555555543 455543 445556655455556667778887664 43333222
Q ss_pred HHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHHhc--CCcEEEEEEEcCC--CCcccHHHHHH
Q 006567 111 IVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYY--GWNAVSVIFVDNE--YGRNGVSALND 186 (640)
Q Consensus 111 ~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~~~--~w~~v~ii~~~~~--~g~~~~~~~~~ 186 (640)
.....+...++|+|......+ .. .....+......-++.++++|... +-++++++..... ......+.+++
T Consensus 73 ~~~~~~~~~~iPvV~i~~~~~---~~--~~~~~V~~D~~~~g~~a~~~L~~~g~g~~~I~~i~g~~~~~~~~~R~~Gf~~ 147 (271)
T 2dri_A 73 NAVKMANQANIPVITLDRQAT---KG--EVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQ 147 (271)
T ss_dssp HHHHHHHHTTCCEEEESSCCS---SS--CCSEEEEECHHHHHHHHHHHHHHHHCTTCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCcEEEecCCCC---CC--ceeEEEecChHHHHHHHHHHHHHHcCCCCeEEEEECCCCCccHhHHHHHHHH
Confidence 233444567999998643221 11 111234556666777778876665 5689999974322 22345678888
Q ss_pred HHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhc--CCceEEEEecChhhHHHHHHHHHHcCCccCCeEEEEe
Q 006567 187 KLAERRCRISYKSGIPPESGVNTGYVMDLLVKVAL--MESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIAT 258 (640)
Q Consensus 187 ~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~vivl~~~~~~~~~il~~a~~~gl~~~~~~~i~~ 258 (640)
.+++.|+.+..... . . .+...-...++++.+ ..+++|+ +.+...+.-+++++++.|+ .+...++-
T Consensus 148 al~~~g~~~~~~~~-~-~--~~~~~~~~~~~~ll~~~~~~~ai~-~~nD~~A~g~~~al~~~g~--~dv~vvGf 214 (271)
T 2dri_A 148 AVAAHKFNVLASQP-A-D--FDRIKGLNVMQNLLTAHPDVQAVF-AQNDEMALGALRALQTAGK--SDVMVVGF 214 (271)
T ss_dssp HHHHHTCEEEEEEE-C-T--TCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHHHHHHHHTC--CSCEEEEE
T ss_pred HHhcCCCEEEEecC-C-C--CCHHHHHHHHHHHHHhCCCccEEE-ECCCcHHHHHHHHHHHcCC--CCcEEEEe
Confidence 99888887643221 1 1 123333344444433 2355544 4455667889999999997 34444443
No 129
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1
Probab=97.46 E-value=7e-05 Score=69.16 Aligned_cols=76 Identities=8% Similarity=0.134 Sum_probs=63.7
Q ss_pred CcceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHhhHHHHHHcCcccEEEeeeeeecc------ccceEEeCccc
Q 006567 487 SDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDITIVTN------RTKIVDFSQPY 560 (640)
Q Consensus 487 ~~~~~G~~~dl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~~~~~~~~t~~------R~~~vdfs~p~ 560 (640)
..+|+|+.--|.+.+. |++ +++... -.+++.+..|++|++|+++++++.+++ |++.+|||.|+
T Consensus 27 s~~yeGlatgl~~~f~---gi~--~~i~~m------rg~~~RI~aL~~gk~D~aI~S~~aa~e~~~~~~r~~~vdFg~~y 95 (231)
T 2ozz_A 27 TRLYEGLASGLKAQFD---GIP--FYYAHM------RGADIRVECLLNGVYDMAVVSRLAAESYLSQNNLCIALELGPHT 95 (231)
T ss_dssp SHHHHHHHHHHHHTTT---TSC--EEEEEC------SCHHHHHHHHHTTSCSEEEEEHHHHHHHHHHSCEEEEEECCTTS
T ss_pred hhhhhHHHHHHHHHhc---CCc--EEEEEc------cChHHHHHHHHcCCCCEEEEecccchhhhcccCeEEEEEcCCCc
Confidence 4678999877777763 777 444442 159999999999999999999999999 99999999999
Q ss_pred cccceEEEEecCC
Q 006567 561 AASGLVVVVPFRK 573 (640)
Q Consensus 561 ~~~~~~il~~~~~ 573 (640)
+.+.-.++++++.
T Consensus 96 Yv~~h~li~~~~~ 108 (231)
T 2ozz_A 96 YVGEHQLICRKGE 108 (231)
T ss_dssp SSCCEEEEEETTC
T ss_pred cccCeEEEEeCCC
Confidence 9888888888776
No 130
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=97.42 E-value=0.0063 Score=58.66 Aligned_cols=198 Identities=7% Similarity=-0.078 Sum_probs=114.6
Q ss_pred CeeEEEEEEeecC-CccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcCcEEEEc-CCCh
Q 006567 29 PAVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIG-PQCS 106 (640)
Q Consensus 29 ~~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aiiG-p~~s 106 (640)
..+.+||+++|.. ..+-.....+++.+.++ .|+++.+...+...+... ++ ++.+||- |...
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~~~~~~~~~~~~------~~---~vdgiI~~~~~~ 68 (277)
T 3cs3_A 6 RQTNIIGVYLADYGGSFYGELLEGIKKGLAL--------FDYEMIVCSGKKSHLFIP------EK---MVDGAIILDWTF 68 (277)
T ss_dssp CCCCEEEEEECSSCTTTHHHHHHHHHHHHHT--------TTCEEEEEESTTTTTCCC------TT---TCSEEEEECTTS
T ss_pred cCCcEEEEEecCCCChhHHHHHHHHHHHHHH--------CCCeEEEEeCCCCHHHHh------hc---cccEEEEecCCC
Confidence 3456899999863 33333445555555443 256665543322211110 01 5665553 3222
Q ss_pred HHHHHHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCC--CCcccHHHH
Q 006567 107 TVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNE--YGRNGVSAL 184 (640)
Q Consensus 107 ~~~~~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~~~~--~g~~~~~~~ 184 (640)
. ...+ ..+...++|+|......+ + +.+..+..+....+..++++|...|.++++++..+.. ......+.+
T Consensus 69 ~-~~~~-~~l~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf 140 (277)
T 3cs3_A 69 P-TKEI-EKFAERGHSIVVLDRTTE---H---RNIRQVLLDNRGGATQAIEQFVNVGSKKVLLLSGPEKGYDSQERLAVS 140 (277)
T ss_dssp C-HHHH-HHHHHTTCEEEESSSCCC---S---TTEEEEEECHHHHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHH
T ss_pred C-HHHH-HHHHhcCCCEEEEecCCC---C---CCCCEEEeCcHHHHHHHHHHHHHcCCceEEEEeCCccCccHHHHHHHH
Confidence 2 2223 334457999998643221 1 2344566677777888888888889999999985432 334556788
Q ss_pred HHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcC---CceEEEEecChhhHHHHHHHHHHcCCccCCeEEEE
Q 006567 185 NDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALM---ESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIA 257 (640)
Q Consensus 185 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~vivl~~~~~~~~~il~~a~~~gl~~~~~~~i~ 257 (640)
++.+++.|+.+. ...-. .+..+-...++++.+. .+++|+ +.+...+..+++++++.|+.-++-+.+.
T Consensus 141 ~~~l~~~g~~~~-~~~~~----~~~~~~~~~~~~~l~~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vv 210 (277)
T 3cs3_A 141 TRELTRFGIPYE-IIQGD----FTEPSGYAAAKKILSQPQTEPVDVF-AFNDEMAIGVYKYVAETNYQMGKDIRII 210 (277)
T ss_dssp HHHHHHTTCCEE-EEECC----SSHHHHHHHHHHHTTSCCCSSEEEE-ESSHHHHHHHHHHHTTSSCCBTTTEEEE
T ss_pred HHHHHHcCCCee-EEeCC----CChhHHHHHHHHHHhcCCCCCcEEE-EcChHHHHHHHHHHHHcCCCCCCcEEEE
Confidence 889998887765 11111 1244445556666554 456554 3455667788999999987644434443
No 131
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=97.40 E-value=0.0076 Score=60.55 Aligned_cols=208 Identities=10% Similarity=0.031 Sum_probs=121.2
Q ss_pred eeEEEEEEeecCC-ccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcCcEEEEcCCChHH
Q 006567 30 AVVNVGALFTLDS-TIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTV 108 (640)
Q Consensus 30 ~~i~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aiiGp~~s~~ 108 (640)
..-.||+++|... ..-.....+++.+.++ .|+.+.+ .++..++..-.+....++.+++.+||-......
T Consensus 69 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~ 138 (355)
T 3e3m_A 69 RSGFVGLLLPSLNNLHFAQTAQSLTDVLEQ--------GGLQLLL--GYTAYSPEREEQLVETMLRRRPEAMVLSYDGHT 138 (355)
T ss_dssp --CEEEEEESCSBCHHHHHHHHHHHHHHHH--------TTCEEEE--EECTTCHHHHHHHHHHHHHTCCSEEEEECSCCC
T ss_pred CCCEEEEEeCCCCchHHHHHHHHHHHHHHH--------CCCEEEE--EeCCCChHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 3457999999642 2222344555544444 2565544 455556665555666677777776654222211
Q ss_pred HHHHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCCC---CcccHHHHH
Q 006567 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEY---GRNGVSALN 185 (640)
Q Consensus 109 ~~~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~~~~~---g~~~~~~~~ 185 (640)
. .....+...++|+|...... .. +....+.......+..++++|...|.++++++...... .....+.|+
T Consensus 139 ~-~~~~~l~~~~iPvV~i~~~~---~~---~~~~~V~~D~~~~~~~a~~~L~~~G~r~I~~i~~~~~~~~~~~~R~~Gf~ 211 (355)
T 3e3m_A 139 E-QTIRLLQRASIPIVEIWEKP---AH---PIGHTVGFSNERAAYDMTNALLARGFRKIVFLGEKDDDWTRGAARRAGFK 211 (355)
T ss_dssp H-HHHHHHHHCCSCEEEESSCC---SS---CSSEEEECCHHHHHHHHHHHHHHTTCCSEEEEEESSCTTSHHHHHHHHHH
T ss_pred H-HHHHHHHhCCCCEEEECCcc---CC---CCCCEEEeChHHHHHHHHHHHHHCCCCeEEEEccCcccChhHHHHHHHHH
Confidence 2 23445566799999763211 11 22235566777778888888888999999999865332 345678899
Q ss_pred HHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhc--CCceEEEEecChhhHHHHHHHHHHcCCccCCeEEE
Q 006567 186 DKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVAL--MESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWI 256 (640)
Q Consensus 186 ~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~vivl~~~~~~~~~il~~a~~~gl~~~~~~~i 256 (640)
+.+++.|+.+.....+... ..+...-...+.++.+ ..+++|+ +++...+..+++++++.|+.-++-+-+
T Consensus 212 ~al~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~ll~~~~~~~ai~-~~nD~~A~g~~~al~~~G~~vP~disv 282 (355)
T 3e3m_A 212 RAMREAGLNPDQEIRLGAP-PLSIEDGVAAAELILQEYPDTDCIF-CVSDMPAFGLLSRLKSIGVAVPEQVSV 282 (355)
T ss_dssp HHHHHTTSCSCCEEEESCS-SCCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHHHHHHHHTCCTTTTCEE
T ss_pred HHHHHCCcCCCccEEEecC-CCCHHHHHHHHHHHHcCCCCCcEEE-ECChHHHHHHHHHHHHcCCCCCCceEE
Confidence 9999988764311111111 0123333444444443 3466655 455566778899999999865443333
No 132
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=97.39 E-value=0.0016 Score=62.91 Aligned_cols=199 Identities=11% Similarity=0.052 Sum_probs=112.0
Q ss_pred eeEEEEEEeecC-CccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcCcEEEEcCCChHH
Q 006567 30 AVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTV 108 (640)
Q Consensus 30 ~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aiiGp~~s~~ 108 (640)
.+-+||+++|.. ..+-.....+++.+.++. |+++. +.++..++..-.+....+..+++.+||-...+
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~~dgiIi~~~~-- 74 (277)
T 3e61_A 7 KSKLIGLLLPDMSNPFFTLIARGVEDVALAH--------GYQVL--IGNSDNDIKKAQGYLATFVSHNCTGMISTAFN-- 74 (277)
T ss_dssp ---CEEEEESCTTSHHHHHHHHHHHHHHHHT--------TCCEE--EEECTTCHHHHHHHHHHHHHTTCSEEEECGGG--
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHHC--------CCEEE--EEeCCCCHHHHHHHHHHHHhCCCCEEEEecCC--
Confidence 457899999974 322234455555555442 45444 34555566665566666777788877753322
Q ss_pred HHHHHH-hhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcC--CCCcccHHHHH
Q 006567 109 AHIVSY-VSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDN--EYGRNGVSALN 185 (640)
Q Consensus 109 ~~~v~~-~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~~~--~~g~~~~~~~~ 185 (640)
.. ... .+...++|+|......+.. . .+.......++.++++|...|.++++++.... .......+.|+
T Consensus 75 ~~-~~~~~l~~~~iPvV~~~~~~~~~-----~---~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~ 145 (277)
T 3e61_A 75 EN-IIENTLTDHHIPFVFIDRINNEH-----N---GISTNHFKGGQLQAEVVRKGKGKNVLIVHENLLIDAFHQRVQGIK 145 (277)
T ss_dssp HH-HHHHHHHHC-CCEEEGGGCC-----------------HHHHHHHHHHHHHHTTCCSEEEEESCTTSHHHHHHHHHHH
T ss_pred hH-HHHHHHHcCCCCEEEEeccCCCC-----C---eEEechHHHHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHHH
Confidence 22 233 5566799999875443211 1 55667777888888988888999999998542 23345567888
Q ss_pred HHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhc-CCceEEEEecChhhHHHHHHHHHHcCCccCCeEEEE
Q 006567 186 DKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVAL-MESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIA 257 (640)
Q Consensus 186 ~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~vivl~~~~~~~~~il~~a~~~gl~~~~~~~i~ 257 (640)
+.+++.|+.+.. ...... .....+.. +.. ..+++|+. .+...+..+++++++.|+.-++-+-+.
T Consensus 146 ~~l~~~~~~~~~-~~~~~~--~~~~~~~~----l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~di~vi 210 (277)
T 3e61_A 146 YILDQQRIDYKM-LEATLL--DNDKKFID----LIKELSIDSIIC-SNDLLAINVLGIVQRYHFKVPAEIQII 210 (277)
T ss_dssp HHHHC---CEEE-EEGGGG--GSHHHHHH----HHHHHTCCEEEE-SSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHcCCCccc-eecCCC--CHHHHHHH----hhcCCCCCEEEE-CCcHHHHHHHHHHHHcCCCCCCceEEE
Confidence 999988877654 111111 11222222 332 35666554 455667789999999998654433333
No 133
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=97.38 E-value=0.0096 Score=56.52 Aligned_cols=197 Identities=12% Similarity=0.025 Sum_probs=118.8
Q ss_pred EEEEEeecC-CccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcCcEEEEc-CCChHHHH
Q 006567 33 NVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIG-PQCSTVAH 110 (640)
Q Consensus 33 ~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aiiG-p~~s~~~~ 110 (640)
+||++.|.. ..+-.....+++.+.++. |+++.+ .++..++..-.+....+..+++.++|- |......
T Consensus 4 ~Igvi~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~- 72 (255)
T 1byk_A 4 VVAIIVTRLDSLSENLAVQTMLPAFYEQ--------GYDPIM--MESQFSPQLVAEHLGVLKRRNIDGVVLFGFTGITE- 72 (255)
T ss_dssp EEEEEESCTTCHHHHHHHHHHHHHHHHH--------TCEEEE--EECTTCHHHHHHHHHHHHTTTCCEEEEECCTTCCT-
T ss_pred EEEEEeCCCCCccHHHHHHHHHHHHHHc--------CCEEEE--EeCCCcHHHHHHHHHHHHhcCCCEEEEecCccccH-
Confidence 689999863 222234455666555553 455544 344556655455555666778876664 3222111
Q ss_pred HHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHHhcCCcEEEEEEEc--C-CCCcccHHHHHHH
Q 006567 111 IVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVD--N-EYGRNGVSALNDK 187 (640)
Q Consensus 111 ~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~~--~-~~g~~~~~~~~~~ 187 (640)
......++|+|...... +.+-.+.......++.++++|...|.++++++... + .......+.+++.
T Consensus 73 ---~~l~~~~~pvV~~~~~~--------~~~~~V~~d~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~gf~~a 141 (255)
T 1byk_A 73 ---EMLAHWQSSLVLLARDA--------KGFASVCYDDEGAIKILMQRLYDQGHRNISYLGVPHSDVTTGKRRHEAYLAF 141 (255)
T ss_dssp ---TTSGGGSSSEEEESSCC--------SSCEEEEECHHHHHHHHHHHHHHTTCCCEEEECCCTTSTTTTHHHHHHHHHH
T ss_pred ---HHHHhcCCCEEEEcccc--------CCCCEEEEccHHHHHHHHHHHHHcCCCeEEEEecCCCCcccHHHHHHHHHHH
Confidence 23345689999764321 12234556777778888898888899999999753 2 2345567789999
Q ss_pred HhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecChhhHHHHHHHHHHcCCccCCeEEEEeC
Q 006567 188 LAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATD 259 (640)
Q Consensus 188 ~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~il~~a~~~gl~~~~~~~i~~~ 259 (640)
+++.|+.+.. +... .+..+-...++++.+..+++|+. ++...+..+++++++.|+ .+...++-+
T Consensus 142 l~~~g~~~~~---~~~~--~~~~~~~~~~~~~l~~~~~ai~~-~~d~~A~g~~~al~~~g~--~di~vig~d 205 (255)
T 1byk_A 142 CKAHKLHPVA---ALPG--LAMKQGYENVAKVITPETTALLC-ATDTLALGASKYLQEQRI--DTLQLASVG 205 (255)
T ss_dssp HHHTTCCCEE---ECCC--SCHHHHHHHSGGGCCTTCCEEEE-SSHHHHHHHHHHHHHTTC--CSCEEEEEC
T ss_pred HHHcCCCcce---eecC--CccchHHHHHHHHhcCCCCEEEE-eChHHHHHHHHHHHHcCC--CcEEEEEeC
Confidence 9998875432 1111 22334444555555556776554 455667789999999997 444444433
No 134
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=97.36 E-value=0.021 Score=55.28 Aligned_cols=212 Identities=12% Similarity=0.030 Sum_probs=118.2
Q ss_pred EEEEEeecC-CccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcCcEEEEc-CCChHH-H
Q 006567 33 NVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIG-PQCSTV-A 109 (640)
Q Consensus 33 ~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aiiG-p~~s~~-~ 109 (640)
+||++.|.. ..+-.....+++.+.++. |+++.+....+..++..-.+....++.++|.+||- |..... .
T Consensus 3 ~Igvi~~~~~~~f~~~~~~gi~~~a~~~--------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~~ 74 (288)
T 1gud_A 3 EYAVVLKTLSNPFWVDMKKGIEDEAKTL--------GVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLV 74 (288)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHHH--------TCCEEEEECSSTTCHHHHHHHHHHHHTSSEEEEEECCSSSSTTH
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHHc--------CCEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHH
Confidence 689999863 222233455555555543 34444332114556655555566677778887664 433322 2
Q ss_pred HHHHHhhccCCceEEecccCCCCCCCCCC-CcE-EEecCCchHHHHHHHHHHHhc-C--CcEEEEEEEcCCC--CcccHH
Q 006567 110 HIVSYVSNELQVPLLSFGVTDPTLSSLQY-PFF-VRTTQSDSYQMTAVAEMVSYY-G--WNAVSVIFVDNEY--GRNGVS 182 (640)
Q Consensus 110 ~~v~~~~~~~~iP~is~~~~~~~l~~~~~-~~~-~r~~p~~~~~~~al~~ll~~~-~--w~~v~ii~~~~~~--g~~~~~ 182 (640)
..+ ..+...++|+|......+......+ ..+ -.+.......++.++++|... | -+++++|...... .....+
T Consensus 75 ~~~-~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~G~~~~~I~~i~g~~~~~~~~~R~~ 153 (288)
T 1gud_A 75 MPV-ARAWKKGIYLVNLDEKIDMDNLKKAGGNVEAFVTTDNVAVGAKGASFIIDKLGAEGGEVAIIEGKAGNASGEARRN 153 (288)
T ss_dssp HHH-HHHHHTTCEEEEESSCCCHHHHHHTTCCCSEEEECCHHHHHHHHHHHHHHHHGGGCEEEEEEECSTTCHHHHHHHH
T ss_pred HHH-HHHHHCCCeEEEECCCCCcccccccCCceeEEECCChHHHHHHHHHHHHHHhCCCCCEEEEEeCCCCCchHhHHHH
Confidence 223 3344579999986432211000000 002 345567777778888877666 7 8999999754322 234567
Q ss_pred HHHHHHhhc-CeEEEEeeccCCCCCCChhHHHHHHHHHhcC--CceEEEEecChhhHHHHHHHHHHcCCccCCeEEEEeC
Q 006567 183 ALNDKLAER-RCRISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIATD 259 (640)
Q Consensus 183 ~~~~~~~~~-g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~vivl~~~~~~~~~il~~a~~~gl~~~~~~~i~~~ 259 (640)
.+++.+++. |+.+.....-. .+...-...++++.+. .+++|+. .+...+.-+++++++.|+. .+...++-+
T Consensus 154 Gf~~al~~~~g~~~~~~~~~~----~~~~~~~~~~~~ll~~~~~~~ai~~-~nD~~A~g~~~al~~~G~~-~dv~vvGfD 227 (288)
T 1gud_A 154 GATEAFKKASQIKLVASQPAD----WDRIKALDVATNVLQRNPNIKAIYC-ANDTMAMGVAQAVANAGKT-GKVLVVGTD 227 (288)
T ss_dssp HHHHHHHTCTTEEEEEEEECT----TCHHHHHHHHHHHHHHCTTCCEEEE-SSHHHHHHHHHHHHHTTCT-TTSEEEEES
T ss_pred HHHHHHHhCCCcEEEEeecCC----ccHHHHHHHHHHHHHhCCCceEEEE-CCCchHHHHHHHHHhcCCC-CCeEEEEeC
Confidence 788889877 88664322111 1233334444554432 3565544 4455677899999999985 455555543
No 135
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=97.33 E-value=0.0063 Score=62.60 Aligned_cols=211 Identities=12% Similarity=0.071 Sum_probs=120.4
Q ss_pred CCeeEEEEEEeecCCccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcCcEEEEcCCChH
Q 006567 28 RPAVVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCST 107 (640)
Q Consensus 28 ~~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aiiGp~~s~ 107 (640)
...+-+||+++|.+..+-.....+++-+.++. |+.+.+...+... +....+..++|++||-...
T Consensus 22 ~~~s~~Igvv~~~~~~f~~~l~~gi~~~a~~~--------g~~~~i~~~~~~~------~~i~~l~~~~vDGiIi~~~-- 85 (412)
T 4fe7_A 22 FTKRHRITLLFNANKAYDRQVVEGVGEYLQAS--------QSEWDIFIEEDFR------ARIDKIKDWLGDGVIADFD-- 85 (412)
T ss_dssp CCCCEEEEEECCTTSHHHHHHHHHHHHHHHHH--------TCCEEEEECC-CC--------------CCCSEEEEETT--
T ss_pred CCCCceEEEEeCCcchhhHHHHHHHHHHHHhc--------CCCeEEEecCCcc------chhhhHhcCCCCEEEEecC--
Confidence 44578899999865544445566666666654 3444444433221 1234455667887775222
Q ss_pred HHHHHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCCC----CcccHHH
Q 006567 108 VAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEY----GRNGVSA 183 (640)
Q Consensus 108 ~~~~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~~~~~----g~~~~~~ 183 (640)
...+...+...++|+|......+... ..+.+-.+.......+..++++|...|.++++++...... .....+.
T Consensus 86 -~~~~~~~l~~~~iPvV~i~~~~~~~~--~~~~~~~V~~D~~~~g~~a~~~L~~~G~r~I~~i~~~~~~~~~~~~~R~~G 162 (412)
T 4fe7_A 86 -DKQIEQALADVDVPIVGVGGSYHLAE--SYPPVHYIATDNYALVESAFLHLKEKGVNRFAFYGLPESSGKRWATEREYA 162 (412)
T ss_dssp -CHHHHHHHTTCCSCEEEEEECCSSGG--GSCSSEEEEECHHHHHHHHHHHHHHTTCCEEEEECCCTTSCCHHHHHHHHH
T ss_pred -ChHHHHHHhhCCCCEEEecCCccccc--cCCCCCEEEeCHHHHHHHHHHHHHHcCCceEEEecccccccccHHHHHHHH
Confidence 22345566778999998654332211 1123345566777788888899888999999999754332 4456778
Q ss_pred HHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhc--CCceEEEEecChhhHHHHHHHHHHcCCccCC-eEEEEeC
Q 006567 184 LNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVAL--MESRVIVLHVSPSLGFQVFSVAKYLGMMGNG-YVWIATD 259 (640)
Q Consensus 184 ~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~vivl~~~~~~~~~il~~a~~~gl~~~~-~~~i~~~ 259 (640)
+++.+++.|+........... ..+.......+.++.+ ..+++|+ +++...+..+++++++.|+..++ ...++-+
T Consensus 163 f~~al~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~aI~-~~nD~~A~g~~~al~~~G~~vP~disvig~D 239 (412)
T 4fe7_A 163 FRQLVAEEKYRGVVYQGLETA-PENWQHAQNRLADWLQTLPPQTGII-AVTDARARHILQVCEHLHIPVPEKLCVIGID 239 (412)
T ss_dssp HHHHHTTSSSCCEEECCSCSS-CSSHHHHHHHHHHHHHHSCTTEEEE-ESSHHHHHHHHHHHHHHTCCTTTTSEEEESS
T ss_pred HHHHHHHcCCCcccccccccc-ccchhhHHHHHHHHHHhCCCCeEEE-EEecHHHHHHHHHHHHcCCCCCceEEEEeec
Confidence 999999888754322111111 0122233344444333 3456555 44556677889999999986543 4444433
No 136
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=97.33 E-value=0.0041 Score=60.04 Aligned_cols=196 Identities=12% Similarity=0.056 Sum_probs=122.7
Q ss_pred CeeEEEEEEeecC-CccchHHHHHHHHHHHHHhccCCCCCCcE-EEEEEccCCCChHHHHHHHHHhHhcCcEEEEcCCCh
Q 006567 29 PAVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTK-LNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCS 106 (640)
Q Consensus 29 ~~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~-i~~~~~D~~~~~~~a~~~a~~l~~~~v~aiiGp~~s 106 (640)
..+-+||+++|.. ..+-.....+++.+.++. |++ +. +.++..++..-.+....+..+++.+||-..
T Consensus 8 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~-- 75 (277)
T 3hs3_A 8 KKSKMIGIIIPDLNNRFYAQIIDGIQEVIQKE--------GYTALI--SFSTNSDVKKYQNAIINFENNNVDGIITSA-- 75 (277)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHHHHHHHHHHT--------TCEEEE--EECSSCCHHHHHHHHHHHHHTTCSEEEEEC--
T ss_pred CCCCEEEEEeCCCCChhHHHHHHHHHHHHHHC--------CCCEEE--EEeCCCChHHHHHHHHHHHhCCCCEEEEcc--
Confidence 3457899999974 322234455555555542 555 43 456666666656666667777888766422
Q ss_pred HHHHHHHHhhccCCceEEecccC-CCCCCCCCCCcEEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcC--CCCcccHHH
Q 006567 107 TVAHIVSYVSNELQVPLLSFGVT-DPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDN--EYGRNGVSA 183 (640)
Q Consensus 107 ~~~~~v~~~~~~~~iP~is~~~~-~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~~~--~~g~~~~~~ 183 (640)
.....+...++|+|..... .+ + +.+ .+.......++.++++|. .|.++++++.... .......+.
T Consensus 76 ----~~~~~~~~~~iPvV~~~~~~~~---~---~~~-~V~~D~~~~g~~a~~~L~-~G~~~I~~i~~~~~~~~~~~R~~G 143 (277)
T 3hs3_A 76 ----FTIPPNFHLNTPLVMYDSANIN---D---DIV-RIVSNNTKGGKESIKLLS-KKIEKVLIQHWPLSLPTIRERIEA 143 (277)
T ss_dssp ----CCCCTTCCCSSCEEEESCCCCC---S---SSE-EEEECHHHHHHHHHHTSC-TTCCEEEEEESCTTSHHHHHHHHH
T ss_pred ----hHHHHHHhCCCCEEEEcccccC---C---CCE-EEEEChHHHHHHHHHHHH-hCCCEEEEEeCCCcCccHHHHHHH
Confidence 1123356679999986543 22 1 234 667777888888888887 9999999997542 234456678
Q ss_pred HHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcC--CceEEEEecChhhHHHHHHHHHHcCCccCCeEEE
Q 006567 184 LNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWI 256 (640)
Q Consensus 184 ~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~vivl~~~~~~~~~il~~a~~~gl~~~~~~~i 256 (640)
+++.+++.|+.+... ..... .+ ...+.++.+. .+++|+ +.+...+..+++++++.|+.-++-+-+
T Consensus 144 f~~~l~~~g~~~~~~-~~~~~---~~---~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP~di~v 210 (277)
T 3hs3_A 144 MTAEASKLKIDYLLE-ETPEN---NP---YISAQSALNKSNQFDAII-TVNDLYAAEIIKEAKRRNLKIPDDFQL 210 (277)
T ss_dssp HHHHHHHTTCEEEEE-ECCSS---CH---HHHHHHHHHTGGGCSEEE-CSSHHHHHHHHHHHHHTTCCTTTTCEE
T ss_pred HHHHHHHCCCCCCCC-CccCC---ch---HHHHHHHHcCCCCCCEEE-ECCHHHHHHHHHHHHHcCCCCCCceEE
Confidence 899999999887654 33222 12 3444444443 455554 345566778999999999875443333
No 137
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=97.29 E-value=0.005 Score=60.39 Aligned_cols=204 Identities=11% Similarity=0.056 Sum_probs=119.8
Q ss_pred eeEEEEEEeecC------CccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcCcEEEEc-
Q 006567 30 AVVNVGALFTLD------STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIG- 102 (640)
Q Consensus 30 ~~i~IG~l~~~~------~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aiiG- 102 (640)
.+-+||+++|.. ..+-.....+++.+.++. |+++. +.++..++..-.+....+..+++.+||-
T Consensus 21 ~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiIi~ 90 (305)
T 3huu_A 21 KTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVR--------GYSTR--MTVSENSGDLYHEVKTMIQSKSVDGFILL 90 (305)
T ss_dssp CCCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHH--------TCEEE--ECCCSSHHHHHHHHHHHHHTTCCSEEEES
T ss_pred CCCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHC--------CCEEE--EEeCCCChHHHHHHHHHHHhCCCCEEEEe
Confidence 456899999972 222234455555555543 45444 4555555544444555566678887664
Q ss_pred CCChHHHHHHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCC--CCccc
Q 006567 103 PQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNE--YGRNG 180 (640)
Q Consensus 103 p~~s~~~~~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~~~~--~g~~~ 180 (640)
|..... .....+...++|+|...... .. +.+-.+.......+..++++|...|.++++++..... .....
T Consensus 91 ~~~~~~--~~~~~l~~~~iPvV~i~~~~---~~---~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R 162 (305)
T 3huu_A 91 YSLKDD--PIEHLLNEFKVPYLIVGKSL---NY---ENIIHIDNDNIDAAYQLTQYLYHLGHRHILFLQESGHYAVTEDR 162 (305)
T ss_dssp SCBTTC--HHHHHHHHTTCCEEEESCCC---SS---TTCCEEECCHHHHHHHHHHHHHHTTCCSEEEEEESSCBHHHHHH
T ss_pred CCcCCc--HHHHHHHHcCCCEEEECCCC---cc---cCCcEEEeCHHHHHHHHHHHHHHCCCCeEEEEcCCcccchhHHH
Confidence 333221 23445566799999864332 11 1223456677777888888888889999999986533 23456
Q ss_pred HHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHH-hc--CCceEEEEecChhhHHHHHHHHHHcCCccCC-eEEE
Q 006567 181 VSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKV-AL--MESRVIVLHVSPSLGFQVFSVAKYLGMMGNG-YVWI 256 (640)
Q Consensus 181 ~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l-~~--~~~~vivl~~~~~~~~~il~~a~~~gl~~~~-~~~i 256 (640)
.+.+++.+++.|+.+.. . +... ... -...+.++ .+ ..+++|+ +++...+..+++++++.|+.-++ ...+
T Consensus 163 ~~Gf~~~l~~~g~~~~~-~-~~~~---~~~-~~~~~~~~~l~~~~~~~ai~-~~nd~~A~g~~~al~~~g~~vP~di~vi 235 (305)
T 3huu_A 163 SVGFKQYCDDVKISNDC-V-VIKS---MND-LRDFIKQYCIDASHMPSVII-TSDVMLNMQLLNVLYEYQLRIPEDIQTA 235 (305)
T ss_dssp HHHHHHHHHHTTCCCCE-E-EECS---HHH-HHHHC--------CCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHHHHHHcCCCccc-E-EecC---cHH-HHHHHHHhhhcCCCCCCEEE-ECChHHHHHHHHHHHHcCCCCCcceEEE
Confidence 77888999988876543 1 1111 111 33444454 33 3456655 45556677899999999986443 3444
Q ss_pred Ee
Q 006567 257 AT 258 (640)
Q Consensus 257 ~~ 258 (640)
+-
T Consensus 236 g~ 237 (305)
T 3huu_A 236 TF 237 (305)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 138
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=97.28 E-value=0.008 Score=59.95 Aligned_cols=201 Identities=10% Similarity=0.060 Sum_probs=121.7
Q ss_pred eeEEEEEEeecC-CccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcCcEEEEc-CCChH
Q 006567 30 AVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIG-PQCST 107 (640)
Q Consensus 30 ~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aiiG-p~~s~ 107 (640)
..-.||+++|.. ...-.....+++.+.++. |+.+. +.++..++..-.+....++.+++.+||- |....
T Consensus 61 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~ 130 (339)
T 3h5o_A 61 KSRTVLVLIPSLANTVFLETLTGIETVLDAA--------GYQML--IGNSHYDAGQELQLLRAYLQHRPDGVLITGLSHA 130 (339)
T ss_dssp --CEEEEEESCSTTCTTHHHHHHHHHHHHHT--------TCEEE--EEECTTCHHHHHHHHHHHHTTCCSEEEEECSCCC
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHHHHC--------CCEEE--EEeCCCChHHHHHHHHHHHcCCCCEEEEeCCCCC
Confidence 356799999974 333345566666666652 56554 4456666666666666777778876653 22222
Q ss_pred HHHHHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcC-CCCcccHHHHHH
Q 006567 108 VAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDN-EYGRNGVSALND 186 (640)
Q Consensus 108 ~~~~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~~~-~~g~~~~~~~~~ 186 (640)
. .....+...++|+|......+ . +.. .+.......+..++++|...|.++++++.... .......+.+++
T Consensus 131 ~--~~~~~l~~~~iPvV~~~~~~~---~---~~~-~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~R~~Gf~~ 201 (339)
T 3h5o_A 131 E--PFERILSQHALPVVYMMDLAD---D---GRC-CVGFSQEDAGAAITRHLLSRGKRRIGFLGAQLDERVMKRLDGYRA 201 (339)
T ss_dssp T--THHHHHHHTTCCEEEEESCCS---S---SCC-EEECCHHHHHHHHHHHHHHTTCCSEEEEEESCCHHHHHHHHHHHH
T ss_pred H--HHHHHHhcCCCCEEEEeecCC---C---CCe-EEEECHHHHHHHHHHHHHHCCCCeEEEEeCCCCccHHHHHHHHHH
Confidence 1 234455667999997632211 1 112 55677777888888888888999999998653 233345677888
Q ss_pred HHhhcCeEE---EEeeccCCCCCCChhHHHHHHHHHhcC--CceEEEEecChhhHHHHHHHHHHcCCccCCeE
Q 006567 187 KLAERRCRI---SYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYV 254 (640)
Q Consensus 187 ~~~~~g~~v---~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~vivl~~~~~~~~~il~~a~~~gl~~~~~~ 254 (640)
.+++.|+.. .... ... .+...-...++++.+. .+++|+. ++...+..+++++++.|+.-++-+
T Consensus 202 al~~~g~~~~~~~~~~--~~~--~~~~~~~~~~~~ll~~~~~~~ai~~-~nD~~A~g~~~al~~~G~~vP~di 269 (339)
T 3h5o_A 202 ALDAADCRDAGLEWLD--PQP--SSMQMGADMLDRALAERPDCDALFC-CNDDLAIGALARSQQLGIAVPERL 269 (339)
T ss_dssp HHHHTTCCCGGGEEEE--CSC--CCHHHHHHHHHHHHHHCTTCCEEEE-SSHHHHHHHHHHHHHTTCCTTTTC
T ss_pred HHHHCCCCCCChheEe--cCC--CCHHHHHHHHHHHHcCCCCCcEEEE-CChHHHHHHHHHHHHcCCCCCCCE
Confidence 888887621 1111 111 1233334445555433 4666654 555667789999999998755433
No 139
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=97.28 E-value=0.0078 Score=59.67 Aligned_cols=205 Identities=9% Similarity=-0.052 Sum_probs=121.8
Q ss_pred eEEEEEEeecC-CccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcCcEEEEc-CCChHH
Q 006567 31 VVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIG-PQCSTV 108 (640)
Q Consensus 31 ~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aiiG-p~~s~~ 108 (640)
..+||+++|.. ..+-.....+++.+.++. |+++.+ .++..++..-.+....++.+++.+||- |.....
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~--~~~~~~~~~~~~~i~~~~~~~vdgiIi~~~~~~~ 72 (330)
T 3uug_A 3 KGSVGIAMPTKSSARWIDDGNNIVKQLQEA--------GYKTDL--QYADDDIPNQLSQIENMVTKGVKVLVIASIDGTT 72 (330)
T ss_dssp CCEEEEEECCSSSTHHHHHHHHHHHHHHHT--------TCEEEE--EECTTCHHHHHHHHHHHHHHTCSEEEECCSSGGG
T ss_pred CcEEEEEeCCCcchHHHHHHHHHHHHHHHc--------CCEEEE--eeCCCCHHHHHHHHHHHHHcCCCEEEEEcCCchh
Confidence 46899999974 333334556666666552 555544 446677777777777888888887764 444444
Q ss_pred HHHHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHHh-------cCCcEEEEEEEcCC--CCcc
Q 006567 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSY-------YGWNAVSVIFVDNE--YGRN 179 (640)
Q Consensus 109 ~~~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~~-------~~w~~v~ii~~~~~--~g~~ 179 (640)
.......+...++|+|......+.. .. ....+.......++.++++|.. .|.++++++..... ....
T Consensus 73 ~~~~~~~~~~~giPvV~~~~~~~~~--~~--~~~~V~~D~~~~g~~a~~~l~~~~~~~~~~G~~~i~~i~g~~~~~~~~~ 148 (330)
T 3uug_A 73 LSDVLKQAGEQGIKVIAYDRLIRNS--GD--VSYYATFDNFQVGVLQATSITDKLGLKDGKGPFNIELFGGSPDDNNAFF 148 (330)
T ss_dssp GHHHHHHHHHTTCEEEEESSCCCSC--TT--CCEEEEECHHHHHHHHHHHHHHHHTGGGTCCCEEEEECBCCTTCHHHHH
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCC--Cc--eeEEEEeCHHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCCchHHH
Confidence 4445556677899999875433221 11 1134455677777888887766 68889999864322 2334
Q ss_pred cHHHHHHHHhhc---C-eEEEEeec----cCCCCCCChhHHHHHHHHHhc-----CCceEEEEecChhhHHHHHHHHHHc
Q 006567 180 GVSALNDKLAER---R-CRISYKSG----IPPESGVNTGYVMDLLVKVAL-----MESRVIVLHVSPSLGFQVFSVAKYL 246 (640)
Q Consensus 180 ~~~~~~~~~~~~---g-~~v~~~~~----~~~~~~~~~~~~~~~l~~l~~-----~~~~vivl~~~~~~~~~il~~a~~~ 246 (640)
..+.+++.+++. | +.+..... +... ..+...-...++++.+ ..+++|+ +.+...+..+++++++.
T Consensus 149 R~~Gf~~al~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~ai~-~~nd~~A~g~~~al~~~ 226 (330)
T 3uug_A 149 FYDGAMSVLKPYIDSGKLVVKSGQMGMDKVGTL-RWDPATAQARMDNLLSAYYTDAKVDAVL-SPYDGLSIGIISSLKGV 226 (330)
T ss_dssp HHHHHHHHHHHHHHHTSEECTTCCCSHHHHBCG-GGCHHHHHHHHHHHHHHHCSSSCCCEEE-CSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccccCceEEeecccccccccCC-CCCHHHHHHHHHHHHHhcCCCCCeEEEE-ECCCchHHHHHHHHHHc
Confidence 567778888775 3 44321100 0001 0112333334444443 4555544 44556677899999999
Q ss_pred CCccC
Q 006567 247 GMMGN 251 (640)
Q Consensus 247 gl~~~ 251 (640)
|+..+
T Consensus 227 g~~vP 231 (330)
T 3uug_A 227 GYGTK 231 (330)
T ss_dssp TCSSS
T ss_pred CCCCC
Confidence 98654
No 140
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=97.23 E-value=0.017 Score=57.31 Aligned_cols=199 Identities=11% Similarity=0.033 Sum_probs=120.2
Q ss_pred eeEEEEEEeecC-CccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcCcEEEEcCCChHH
Q 006567 30 AVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTV 108 (640)
Q Consensus 30 ~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aiiGp~~s~~ 108 (640)
.+-+||+++|.. ..+-.....+++.+.++. |+.+.+.. +.. +..-.+....+..+++.+||-...
T Consensus 63 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~~--~~~-~~~~~~~~~~l~~~~vdGiIi~~~--- 128 (333)
T 3jvd_A 63 RSALVGVIVPDLSNEYYSESLQTIQQDLKAA--------GYQMLVAE--ANS-VQAQDVVMESLISIQAAGIIHVPV--- 128 (333)
T ss_dssp -CCEEEEEESCSSSHHHHHHHHHHHHHHHHH--------TCEEEEEE--CCS-HHHHHHHHHHHHHHTCSEEEECCC---
T ss_pred CCCEEEEEeCCCcChHHHHHHHHHHHHHHHC--------CCEEEEEC--CCC-hHHHHHHHHHHHhCCCCEEEEcch---
Confidence 356799999974 333334556666665553 56555543 333 444445555666778887775333
Q ss_pred HHHHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCC--CCcccHHHHHH
Q 006567 109 AHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNE--YGRNGVSALND 186 (640)
Q Consensus 109 ~~~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~~~~--~g~~~~~~~~~ 186 (640)
...+...++|+|......+. .. +-.+.......+..++++|...|.++++++..... ......+.|++
T Consensus 129 ----~~~~~~~~iPvV~~~~~~~~---~~---~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~ 198 (333)
T 3jvd_A 129 ----VGSIAPEGIPMVQLTRGELG---PG---FPRVLCDDEAGFFQLTESVLGGSGMNIAALVGEESLSTTQERMRGISH 198 (333)
T ss_dssp ----TTCCC-CCSCEEEECC-------CC---SCEEEECHHHHHHHHHHHHCCSSSCEEEEEESCTTSHHHHHHHHHHHH
T ss_pred ----HHHHhhCCCCEEEECccCCC---CC---CCEEEEChHHHHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHHHH
Confidence 34456779999986543321 11 22345667777888888888889999999985432 33456778899
Q ss_pred HHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCC-ceEEEEecChhhHHHHHHHHHHcCCccCC-eEEEEe
Q 006567 187 KLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALME-SRVIVLHVSPSLGFQVFSVAKYLGMMGNG-YVWIAT 258 (640)
Q Consensus 187 ~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~vivl~~~~~~~~~il~~a~~~gl~~~~-~~~i~~ 258 (640)
.+++.|+.... ... . .+..+....+.++.+.. +++|+ +++...+..+++++++.|+.-++ ...++-
T Consensus 199 al~~~g~~~~~--~~~-~--~~~~~~~~~~~~ll~~~~~~ai~-~~nd~~A~g~~~al~~~G~~vP~disvig~ 266 (333)
T 3jvd_A 199 AASIYGAEVTF--HFG-H--YSVESGEEMAQVVFNNGLPDALI-VASPRLMAGVMRAFTRLNVRVPHDVVIGGY 266 (333)
T ss_dssp HHHHTTCEEEE--EEC-C--SSHHHHHHHHHHHHHTCCCSEEE-ECCHHHHHHHHHHHHHTTCCTTTTCEEEEE
T ss_pred HHHHCCCCEEE--ecC-C--CCHHHHHHHHHHHhcCCCCcEEE-ECCHHHHHHHHHHHHHcCCCCCCceEEEEE
Confidence 99999987211 101 1 12444445555555443 56655 44556677899999999986543 334443
No 141
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=97.20 E-value=0.025 Score=55.68 Aligned_cols=207 Identities=12% Similarity=0.012 Sum_probs=110.5
Q ss_pred eeEEEEEEeec---CC-ccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcCcEEEEcCCC
Q 006567 30 AVVNVGALFTL---DS-TIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQC 105 (640)
Q Consensus 30 ~~i~IG~l~~~---~~-~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aiiGp~~ 105 (640)
++.+||+++|. +. .+-.....+++.+.++. |+++.+. ++..+.. .......++++++.+||....
T Consensus 3 ~~~~Ig~v~~~g~~~d~~f~~~~~~Gi~~~~~~~--------g~~~~~~--~~~~~~~-~~~~l~~l~~~~~dgIi~~~~ 71 (318)
T 2fqx_A 3 GDFVVGMVTDSGDIDDKSFNQQVWEGISRFAQEN--------NAKCKYV--TASTDAE-YVPSLSAFADENMGLVVACGS 71 (318)
T ss_dssp CCCEEEEEESSSCTTSSSHHHHHHHHHHHHHHHT--------TCEEEEE--ECCSGGG-HHHHHHHHHHTTCSEEEEEST
T ss_pred CCcEEEEEEcCCCCCCccHHHHHHHHHHHHHHHh--------CCeEEEE--eCCCHHH-HHHHHHHHHHcCCCEEEECCh
Confidence 45789999982 22 33334455555555542 4555443 3322222 234556677778888876432
Q ss_pred hHHHHHHHHhhcc-CCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHH----HHHHHhcCC-cEEEEEEEcC-CCCc
Q 006567 106 STVAHIVSYVSNE-LQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAV----AEMVSYYGW-NAVSVIFVDN-EYGR 178 (640)
Q Consensus 106 s~~~~~v~~~~~~-~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al----~~ll~~~~w-~~v~ii~~~~-~~g~ 178 (640)
.. ...+..++.. -++|++......+ . .+.+-.... +..++..+ +.+|.+.|. ++|++|.... ....
T Consensus 72 ~~-~~~~~~~a~~~p~~p~v~id~~~~---~--~~~~~~v~~-d~~~~~~lag~~a~~l~~~Gh~r~Ig~i~g~~~~~~~ 144 (318)
T 2fqx_A 72 FL-VEAVIETSARFPKQKFLVIDAVVQ---D--RDNVVSAVF-GQNEGSFLVGVAAALKAKEAGKSAVGFIVGMELGMMP 144 (318)
T ss_dssp TT-HHHHHHHHHHCTTSCEEEESSCCC---S--CTTEEEEEE-CHHHHHHHHHHHHHHHHHHTTCCEEEEEESCCSTTTH
T ss_pred hH-HHHHHHHHHHCCCCEEEEEcCccC---C--CCCEEEEEe-chHHHHHHHHHHHHHHhccCCCcEEEEEeCcccHHHH
Confidence 22 1223444443 3899987543211 0 122222232 33444444 466666776 8999997432 2334
Q ss_pred ccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecChhhHHHHHHHHHHcCCccCCeEEEE
Q 006567 179 NGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWIA 257 (640)
Q Consensus 179 ~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~il~~a~~~gl~~~~~~~i~ 257 (640)
.....|++.+++.|..+.....+.-. ..+...-....+++.+.++++|+.. ....+.-+++++++.|+. +.-+++.
T Consensus 145 ~r~~Gf~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~a~~ll~~~~daI~~~-~d~~a~Gv~~a~~e~g~~-P~dv~vi 220 (318)
T 2fqx_A 145 LFEAGFEAGVKAVDPDIQVVVEVANT-FSDPQKGQALAAKLYDSGVNVIFQV-AGGTGNGVIKEARDRRLN-GQDVWVI 220 (318)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEECSC-SSCHHHHHHHHHHHHHTTCCEEEEE-CGGGHHHHHHHHHHHHHT-TCCCEEE
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEccC-ccCHHHHHHHHHHHHHCCCcEEEEC-CCCCchHHHHHHHhhhhc-cCCcEEE
Confidence 45677888888777543322222111 0122334445566666678876654 445567788899988776 4434444
No 142
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=97.09 E-value=0.024 Score=56.76 Aligned_cols=203 Identities=9% Similarity=0.036 Sum_probs=112.1
Q ss_pred eeEEEEEEeecC-CccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCC-ChHHHHHHHHHhHhcCcEEEE--cCCC
Q 006567 30 AVVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNC-SGFIGMVEALRFMETDIVAII--GPQC 105 (640)
Q Consensus 30 ~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~-~~~~a~~~a~~l~~~~v~aii--Gp~~ 105 (640)
.+.+||+++|.- ..+-.....+++.+.++ .|+.+.+.. +.. ++..-.+....++.+++.+|| +|..
T Consensus 60 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~~~--~~~~~~~~~~~~l~~l~~~~vdGiIi~~~~~ 129 (349)
T 1jye_A 60 QSLLIGVATSSLALHAPSQIVAAILSRADQ--------LGASVVVSM--VERSGVEACKTAVHNLLAQRVSGLIINYPLD 129 (349)
T ss_dssp --CEEEEEESCTTSHHHHHHHHHHHHHHHH--------TTCEEEEEE--CCSSSHHHHHHHHHHHHTTTCSCEEEESCCC
T ss_pred CCCEEEEEeCCCCcccHHHHHHHHHHHHHH--------cCCEEEEEe--CCCCcHHHHHHHHHHHHHCCCCEEEEecCCC
Confidence 356899999863 22222344555544443 256665543 332 233333445556667776555 4443
Q ss_pred hHHHHHHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCC--CCcccHHH
Q 006567 106 STVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNE--YGRNGVSA 183 (640)
Q Consensus 106 s~~~~~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~~~~--~g~~~~~~ 183 (640)
... .+...+...++|+|...... ....+ .+......-+...+++|...|.+++++|..... ......+.
T Consensus 130 ~~~--~~~~~~~~~~iPvV~i~~~~----~~~~~---~V~~d~~~~~~~a~~~L~~~G~~~I~~i~g~~~~~~~~~R~~G 200 (349)
T 1jye_A 130 DQD--AIAVEAACTNVPALFLDVSD----QTPIN---SIIFSHEDGTRLGVEHLVALGHQQIALLAGPLSSVSARLRLAG 200 (349)
T ss_dssp HHH--HHHHHHHTTTSCEEESSSCT----TSSSC---EEEECHHHHHHHHHHHHHHHTCCSEEEEECCTTSHHHHHHHHH
T ss_pred Chh--HHHHHHhhCCCCEEEEcccC----CCCCC---EEEEchHHHHHHHHHHHHHCCCCEEEEEeCCCCCccHHHHHHH
Confidence 322 22233445789999864321 11122 234556666677778877789999999985432 23445678
Q ss_pred HHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcC--CceEEEEecChhhHHHHHHHHHHcCCccCCeEEE
Q 006567 184 LNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGNGYVWI 256 (640)
Q Consensus 184 ~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~vivl~~~~~~~~~il~~a~~~gl~~~~~~~i 256 (640)
|++.+++.|+.+..... . . .+..+-...+.++.+. .+++|+. ++...+.-+++++++.|+.-++-+-+
T Consensus 201 f~~al~~~gi~~~~~~~-~-~--~~~~~~~~~~~~ll~~~~~~~ai~~-~nD~~A~g~~~al~~~G~~vP~disv 270 (349)
T 1jye_A 201 WHKYLTRNQIQPIAERE-G-D--WSAMSGFQQTMQMLNEGIVPTAMLV-ANDQMALGAMRAITESGLRVGADISV 270 (349)
T ss_dssp HHHHHHHTTCCCSEEEE-C-C--SSHHHHHHHHHHHHHTTCCCSEEEE-SSHHHHHHHHHHHHHTTCCBTTTBEE
T ss_pred HHHHHHHcCCCcccccc-C-C--CChHHHHHHHHHHHhCCCCCCEEEE-CChHHHHHHHHHHHHcCCCCCCcEEE
Confidence 88899888875322111 1 1 1122333344444433 4566554 44556778999999999865443333
No 143
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=97.07 E-value=0.041 Score=54.89 Aligned_cols=201 Identities=13% Similarity=0.013 Sum_probs=112.5
Q ss_pred cCCCeeEEEEEEeecC---CccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcCcEEEEc
Q 006567 26 SARPAVVNVGALFTLD---STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIG 102 (640)
Q Consensus 26 ~~~~~~i~IG~l~~~~---~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aiiG 102 (640)
+...++++||++++-. ..+......+++.+.++.+ -++++.+.++..+.....+....++++++.+||+
T Consensus 21 ~~~~~~~kIglv~~g~i~D~~f~~~~~~G~~~~~~~~G--------~~~~~~~~e~~~~~~d~~~~l~~l~~~g~d~Ii~ 92 (356)
T 3s99_A 21 SMAEEKLKVGFIYIGPPGDFGWTYQHDQARKELVEALG--------DKVETTFLENVAEGADAERSIKRIARAGNKLIFT 92 (356)
T ss_dssp -----CEEEEEECSSCGGGSSHHHHHHHHHHHHHHHHT--------TTEEEEEECSCCTTHHHHHHHHHHHHTTCSEEEE
T ss_pred cccCCCCEEEEEEccCCCchhHHHHHHHHHHHHHHHhC--------CceEEEEEecCCCHHHHHHHHHHHHHCCCCEEEE
Confidence 3456789999999742 2333455666666666542 1245566666555445566777788889999998
Q ss_pred CCChHHHHHHHHhhccC-CceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHH----HHHhcCCcEEEEEEEcC-CC
Q 006567 103 PQCSTVAHIVSYVSNEL-QVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAE----MVSYYGWNAVSVIFVDN-EY 176 (640)
Q Consensus 103 p~~s~~~~~v~~~~~~~-~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~----ll~~~~w~~v~ii~~~~-~~ 176 (640)
.... ...++..++..+ ++|++-..... .. +++..... +..++.-++- ++.+ -++|++|...+ +.
T Consensus 93 ~g~~-~~~~~~~vA~~~Pdv~fv~id~~~---~~---~Nv~sv~~-~~~eg~ylaG~~A~~~tk--~~kIGfVgg~~~p~ 162 (356)
T 3s99_A 93 TSFG-YMDPTVKVAKKFPDVKFEHATGYK---TA---DNMSAYNA-RFYEGRYVQGVIAAKMSK--KGIAGYIGSVPVPE 162 (356)
T ss_dssp CSGG-GHHHHHHHHTTCTTSEEEEESCCC---CB---TTEEEEEE-CHHHHHHHHHHHHHHHCS--SCEEEEEECCCCHH
T ss_pred CCHH-HHHHHHHHHHHCCCCEEEEEeccc---cC---CcEEEEEe-chhHHHHHHHHHHHHhcC--CCEEEEECCCccHH
Confidence 6433 344566666654 78888643221 11 23222222 2334444444 3333 47899997532 22
Q ss_pred CcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecChhhHHHHHHHHHHcCC
Q 006567 177 GRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGM 248 (640)
Q Consensus 177 g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~il~~a~~~gl 248 (640)
.......|.+.++..+..+.....+.-. -.+...-....+.+.+.++|+|+...+.. -++++|++.|.
T Consensus 163 v~~~~~GF~~G~k~~np~i~v~~~~~g~-~~d~~kg~~~a~~l~~~G~DvIf~~~d~~---Gv~~aa~e~Gv 230 (356)
T 3s99_A 163 VVQGINSFMLGAQSVNPDFRVKVIWVNS-WFDPGKEADAAKALIDQGVDIITQHTDST---AAIQVAHDRGI 230 (356)
T ss_dssp HHHHHHHHHHHHHTTCTTCEEEEEECSS-SCCHHHHHHHHHHHHHTTCSEEEESSSSS---HHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECCC-CCChHHHHHHHHHHHhCCCcEEEECCCch---HHHHHHHHcCC
Confidence 2234567777777655433222222211 02234445666777778999887776553 57889998763
No 144
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=97.07 E-value=0.11 Score=50.33 Aligned_cols=196 Identities=13% Similarity=0.010 Sum_probs=106.3
Q ss_pred eeEEEEEEeec--CC-ccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcCcEEEEcCCCh
Q 006567 30 AVVNVGALFTL--DS-TIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCS 106 (640)
Q Consensus 30 ~~i~IG~l~~~--~~-~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aiiGp~~s 106 (640)
.+.+||+++|. +. .+-.....+++.+.++. |+++. +.++..++....+....++++++.+||.....
T Consensus 4 ~~~~Ig~v~~~~~~d~~f~~~~~~gi~~~~~~~--------g~~~~--~~~~~~~~~~~~~~l~~l~~~~vdgIi~~~~~ 73 (296)
T 2hqb_A 4 GGGMVGLLVEDTIDDQGWNRKAYEGLLNIHSNL--------DVDVV--LEEGVNSEQKAHRRIKELVDGGVNLIFGHGHA 73 (296)
T ss_dssp --CEEEEECCCC----CCTHHHHHHHHHHHHHS--------CCEEE--EECCCCSHHHHHHHHHHHHHTTCCEEEECSTH
T ss_pred CCcEEEEEECCCCCCCcHHHHHHHHHHHHHHHh--------CCeEE--EEeCCCCHHHHHHHHHHHHHCCCCEEEEcCHh
Confidence 35789999983 22 44445566666665552 45543 34444444444445666777899999875433
Q ss_pred HHHHHHHHhhccC-CceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHHh-cCCcEEEEEEEcCCCCcccHHHH
Q 006567 107 TVAHIVSYVSNEL-QVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSY-YGWNAVSVIFVDNEYGRNGVSAL 184 (640)
Q Consensus 107 ~~~~~v~~~~~~~-~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~~-~~w~~v~ii~~~~~~g~~~~~~~ 184 (640)
. ...+..++... ++|++...... .. +.+-........-+.....++.+ .+-++|++|...... . ....+
T Consensus 74 ~-~~~~~~~~~~~p~~p~v~id~~~---~~---~~~~~v~~d~~~g~~lag~la~~l~~~~~Ig~i~g~~~~-~-r~~Gf 144 (296)
T 2hqb_A 74 F-AEYFSTIHNQYPDVHFVSFNGEV---KG---ENITSLHFEGYAMGYFGGMVAASMSETHKVGVIAAFPWQ-P-EVEGF 144 (296)
T ss_dssp H-HHHHHTTTTSCTTSEEEEESCCC---CS---SSEEEEEECCHHHHHHHHHHHHHTCSSSEEEEEESCTTC-H-HHHHH
T ss_pred H-HHHHHHHHHHCCCCEEEEEecCc---CC---CCEEEEEechHHHHHHHHHHHHhhccCCeEEEEcCcCch-h-hHHHH
Confidence 2 23345555543 88988754321 11 22222333333322333333333 245899999754322 2 67888
Q ss_pred HHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecChhhHHHHHHHHHHcC
Q 006567 185 NDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLG 247 (640)
Q Consensus 185 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~il~~a~~~g 247 (640)
++.+++.|.. .....+.-. ..+...-....+++.+.++++|+.. +...+.-+++++++.|
T Consensus 145 ~~~~~~~~~~-~~~~~~~~~-~~~~~~g~~~a~~ll~~~~daI~~~-~D~~a~Gv~~a~~e~G 204 (296)
T 2hqb_A 145 VDGAKYMNES-EAFVRYVGE-WTDADKALELFQELQKEQVDVFYPA-GDGYHVPVVEAIKDQG 204 (296)
T ss_dssp HHHHHHTTCC-EEEEEECSS-SSCHHHHHHHHHHHHTTTCCEEECC-CTTTHHHHHHHHHHHT
T ss_pred HHHHHHhCCC-eEEEEeecc-ccCHHHHHHHHHHHHHCCCcEEEEC-CCCCCHHHHHHHHHcC
Confidence 8999888764 322212111 0122334455666666678866544 4455667888999877
No 145
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=96.78 E-value=0.0022 Score=62.85 Aligned_cols=201 Identities=13% Similarity=0.076 Sum_probs=120.4
Q ss_pred eeEEEEEEeecCC-ccch-HHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcCcEEEEc-CCCh
Q 006567 30 AVVNVGALFTLDS-TIGR-VAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIG-PQCS 106 (640)
Q Consensus 30 ~~i~IG~l~~~~~-~~g~-~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aiiG-p~~s 106 (640)
.+-+||+++|... ..-. ....+++.+.++. |+++.+ .++..++....+....+..+++.+||- |...
T Consensus 12 ~s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~ 81 (301)
T 3miz_A 12 RSNTFGIITDYVSTTPYSVDIVRGIQDWANAN--------GKTILI--ANTGGSSEREVEIWKMFQSHRIDGVLYVTMYR 81 (301)
T ss_dssp CCCEEEEEESSTTTCCSCHHHHHHHHHHHHHT--------TCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEEEEEEE
T ss_pred CCCEEEEEeCCCcCcccHHHHHHHHHHHHHHC--------CCEEEE--EeCCCChHHHHHHHHHHHhCCCCEEEEecCCc
Confidence 4568999999742 2223 6677777766663 565554 445566665555666677777876664 2222
Q ss_pred HHHHHHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCC--CCcccHHHH
Q 006567 107 TVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNE--YGRNGVSAL 184 (640)
Q Consensus 107 ~~~~~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~~~~--~g~~~~~~~ 184 (640)
.. ....+...++|+|......+.. ..+-.+.......++.++++|...|.++++++..... ......+.+
T Consensus 82 ~~---~~~~~~~~~iPvV~~~~~~~~~-----~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf 153 (301)
T 3miz_A 82 RI---VDPESGDVSIPTVMINCRPQTR-----ELLPSIEPDDYQGARDLTRYLLERGHRRIGYIRLNPILLGAELRLDAF 153 (301)
T ss_dssp EE---CCCCCTTCCCCEEEEEEECSST-----TSSCEEEECHHHHHHHHHHHHHTTTCCSEEEEECCTTSHHHHHHHHHH
T ss_pred cH---HHHHHHhCCCCEEEECCCCCCC-----CCCCEEeeChHHHHHHHHHHHHHcCCCeEEEEecCccchhHHHHHHHH
Confidence 22 3345567799999865433211 0123345677778888889988899999999985433 234556788
Q ss_pred HHHHhhcCeEEE--Eeecc---CCCCCCChhHHHHHHHHHhcC--CceEEEEecChhhHHHHHHHHHHcCCccC
Q 006567 185 NDKLAERRCRIS--YKSGI---PPESGVNTGYVMDLLVKVALM--ESRVIVLHVSPSLGFQVFSVAKYLGMMGN 251 (640)
Q Consensus 185 ~~~~~~~g~~v~--~~~~~---~~~~~~~~~~~~~~l~~l~~~--~~~vivl~~~~~~~~~il~~a~~~gl~~~ 251 (640)
++.+++.|+.+. ....- ... .........+.++.+. .+++|+. ++...+..+++++++.|+.-+
T Consensus 154 ~~al~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~A~g~~~al~~~g~~vP 224 (301)
T 3miz_A 154 RRTTSEFGLTENDLSISLGMDGPVG--AENNYVFAAATEMLKQDDRPTAIMS-GNDEMAIQIYIAAMALGLRIP 224 (301)
T ss_dssp HHHHHHHTCCGGGEEEEECEESSTT--SCEECHHHHHHHHHTSTTCCSEEEE-SSHHHHHHHHHHHHTTTCCHH
T ss_pred HHHHHHcCCCCCcceEEEcCCCCcC--ccccHHHHHHHHHHcCCCCCcEEEE-CCHHHHHHHHHHHHHcCCCCC
Confidence 888988886431 11111 111 1111111334444433 4566554 455567789999999998643
No 146
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=96.23 E-value=0.02 Score=57.68 Aligned_cols=206 Identities=11% Similarity=0.055 Sum_probs=111.3
Q ss_pred eeEEEEEEeecCCc--cchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcCcEEEEc-CCCh
Q 006567 30 AVVNVGALFTLDST--IGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIG-PQCS 106 (640)
Q Consensus 30 ~~i~IG~l~~~~~~--~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aiiG-p~~s 106 (640)
.+-.||+++|.... ....+...+..++++.=+ |+.+.+...+...+. .-.+....+..+++.+||- |...
T Consensus 67 ~s~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~------g~~~~~~~~~~~~~~-~~~~~~~~l~~~~vdGiIi~~~~~ 139 (366)
T 3h5t_A 67 RAGAIGVLLTEDLTYAFEDMASVDFLAGVAQAAG------DTQLTLIPASPASSV-DHVSAQQLVNNAAVDGVVIYSVAK 139 (366)
T ss_dssp -CCEEEEEESSCTTHHHHSHHHHHHHHHHHHHSS------SCEEEEEECCCCTTC-CHHHHHHHHHTCCCSCEEEESCCT
T ss_pred CCCEEEEEecCCccccccCHHHHHHHHHHHHHHh------hCCEEEEEcCCCccH-HHHHHHHHHHhCCCCEEEEecCCC
Confidence 35679999997422 112233333333333211 566666655533321 1122344455666665543 2221
Q ss_pred HHHHHHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHHhcCCcEEEEEEEc-------------
Q 006567 107 TVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVD------------- 173 (640)
Q Consensus 107 ~~~~~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~~------------- 173 (640)
. . .....+...++|+|...... ..... -.+.......+..++++|...|.+++++|...
T Consensus 140 ~-~-~~~~~l~~~~iPvV~i~~~~---~~~~~---~~V~~D~~~~~~~a~~~L~~~G~r~I~~i~~~~~~~~~~g~~~~~ 211 (366)
T 3h5t_A 140 G-D-PHIDAIRARGLPAVIADQPA---REEGM---PFIAPNNRKAIAPAAQALIDAGHRKIGILSIRLDRANNDGEVTRE 211 (366)
T ss_dssp T-C-HHHHHHHHHTCCEEEESSCC---SCTTC---CEEEECHHHHTHHHHHHHHHTTCCSEEEEEECCSSSCCCEECCHH
T ss_pred C-h-HHHHHHHHCCCCEEEECCcc---CCCCC---CEEEeChHHHHHHHHHHHHHCCCCcEEEEecccccccccCccccc
Confidence 1 1 22334455699999764322 11122 23456777778888888888999999999832
Q ss_pred ------CCCCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhc--CCceEEEEecChhhHHHHHHHHHH
Q 006567 174 ------NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVAL--MESRVIVLHVSPSLGFQVFSVAKY 245 (640)
Q Consensus 174 ------~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~vivl~~~~~~~~~il~~a~~ 245 (640)
........+.|++.+++.|+.+.....+... ..+...-...++++.+ ..+++|+. ++...+..+++++++
T Consensus 212 ~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~ll~~~~~~~ai~~-~nD~~A~g~~~al~~ 289 (366)
T 3h5t_A 212 RLENAQYQVQRDRVRGAMEVFIEAGIDPGTVPIMECW-INNRQHNFEVAKELLETHPDLTAVLC-TVDALAFGVLEYLKS 289 (366)
T ss_dssp HHHTCCCTTHHHHHHHHHHHHHHHTCCGGGSCEEEES-SCCHHHHHHHHHHHHHHCTTCCEEEE-SSHHHHHHHHHHHHH
T ss_pred cccccccchHHHHHHHHHHHHHHCCCCCCcceEEEcC-CCCHHHHHHHHHHHHcCCCCCcEEEE-CCcHHHHHHHHHHHH
Confidence 1223445678888998888653210000000 0123333344445443 34666554 445667789999999
Q ss_pred cCCccCC
Q 006567 246 LGMMGNG 252 (640)
Q Consensus 246 ~gl~~~~ 252 (640)
.|+.-++
T Consensus 290 ~G~~vP~ 296 (366)
T 3h5t_A 290 VGKSAPA 296 (366)
T ss_dssp TTCCTTT
T ss_pred cCCCCCC
Confidence 9986543
No 147
>3qi7_A Putative transcriptional regulator; periplasmic binding protein-like, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.86A {Clostridium difficile}
Probab=96.11 E-value=0.17 Score=49.91 Aligned_cols=215 Identities=10% Similarity=-0.017 Sum_probs=120.9
Q ss_pred CeeEEEEEEeecCCccchHHHHHHHHHHHHHhccCCCC--C---CcEEEEEEccCCCCh-----HHHHHHHHHhHhc-Cc
Q 006567 29 PAVVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSIL--H---GTKLNITMQSSNCSG-----FIGMVEALRFMET-DI 97 (640)
Q Consensus 29 ~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l--~---g~~i~~~~~D~~~~~-----~~a~~~a~~l~~~-~v 97 (640)
..+.+||++.+.-+ ......++++..+++.|..++.- . ...|..++..+-.++ ..++....++... ++
T Consensus 10 ~~~~~igi~t~t~s-~se~t~~~a~~~i~~yg~~pn~~~l~~~~s~~iG~I~~~~~pd~F~se~~ttI~~I~~~a~~~gy 88 (371)
T 3qi7_A 10 IDDFKVAVVTQPLS-ENKVQYNMVEEMAKEYEEENKIDKDKDGQTKVKQTIKHVVLPENFTSNIDSAINKIVKLADDKEV 88 (371)
T ss_dssp CCCEEEEEEECCTT-TCHHHHHHHHHHHHHHHHHTTCCC-----CCCCEEEEEEECCTTGGGGHHHHHHHHHGGGGCTTE
T ss_pred CCCeEEEEEcCCcC-CCHHHHHHHHHHHHHhCCCcccchhcccccccceEEEEeccCCCchHHHHHHHHHHHHHhhcCCC
Confidence 35699999888532 34677899999999988755321 0 112334433322222 2345555555555 77
Q ss_pred EEEEcCCChHHHHHHHHhhccCCceEEecccCCCCCCC--CCCCcEEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCC
Q 006567 98 VAIIGPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSS--LQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNE 175 (640)
Q Consensus 98 ~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~l~~--~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~~~~ 175 (640)
.+||.-............+.+.+++.|-+.+....... ..+.. +.+......-+...++.|...|-+++++|.....
T Consensus 89 k~II~n~~~~~~~~~i~~lkekrvDgIIi~~~~~ed~~~i~~~~d-i~V~~Dn~~Ggy~A~~~Li~~Ghk~Ia~Isgp~~ 167 (371)
T 3qi7_A 89 QAIVVSTDQAGLLPALQKVKEKRPEIITISAPMGDDKNQLSQFVD-VNLGVSAEERGKVLAERSKEMGAKAFIHYASTDD 167 (371)
T ss_dssp EEEEEECSSCCCHHHHHHHHHHCTTSEEEESSCCSCHHHHHHHSS-EEEECCHHHHHHHHHHHHHHTTCSCEEEEEETTG
T ss_pred eEEEEECCCcchHHHHHHHHhcCCCEEEEeccccccchhhcccCc-eEEEeChHHHHHHHHHHHHHCCCCEEEEEecccc
Confidence 77775333221122344455555554433222111000 00011 2455566666677778999999999999986432
Q ss_pred --C--CcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHh---------cCCceEEEEecChhhHHHHHHH
Q 006567 176 --Y--GRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVA---------LMESRVIVLHVSPSLGFQVFSV 242 (640)
Q Consensus 176 --~--g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~vivl~~~~~~~~~il~~ 242 (640)
+ .....+.+++++++.|+.+.....-.+. ....+ ...+++. ..+...-|++++...+.-++++
T Consensus 168 ~~~~~~~~R~~Gyk~Al~e~Gi~~~~~~~~d~t---~e~G~-~~a~~lL~~~~~~~~~~~~~~TAIFatND~mAiG~ika 243 (371)
T 3qi7_A 168 LKDVNIAKRLEMIKETCKNIGLPFVQVNTPNIN---TEEDK-NKVKQFLNEDIEKQVKKYGKDINVFGVNEYMDEVILTK 243 (371)
T ss_dssp GGSHHHHHHHHHHHHHHHHTTCCEEEEEECCCS---STHHH-HHHHHHHHHHHHHHHHHHCSCCEEEESSHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHcCCCceeecCCCCc---hHHHH-HHHHHHHhccccchhhccCCCcEEEECCHHHHHHHHHH
Confidence 2 2235678999999999977554322222 11222 2222221 2233235566677788899999
Q ss_pred HHHcCCc
Q 006567 243 AKYLGMM 249 (640)
Q Consensus 243 a~~~gl~ 249 (640)
+++.|+.
T Consensus 244 l~e~Gi~ 250 (371)
T 3qi7_A 244 ALELKYI 250 (371)
T ss_dssp HHHHCCB
T ss_pred HHHcCCc
Confidence 9999864
No 148
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*
Probab=95.80 E-value=0.13 Score=47.91 Aligned_cols=127 Identities=19% Similarity=0.117 Sum_probs=84.1
Q ss_pred HHHHHhHhcCcEEEEcCCChHHH--------HHHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHH
Q 006567 87 VEALRFMETDIVAIIGPQCSTVA--------HIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEM 158 (640)
Q Consensus 87 ~~a~~l~~~~v~aiiGp~~s~~~--------~~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~l 158 (640)
+++..|...++.+|+-+-++.+. .....+.+..++|+++. +.++++.
T Consensus 57 ~aa~~L~~ag~d~i~~aCtsas~~~G~~~~~~~~~~l~~~~~iPv~~~-------------------------~~A~~~a 111 (240)
T 3ixl_A 57 DHARRLQKQGAAVVSLMCTSLSFYRGAAFNAALTVAMREATGLPCTTM-------------------------STAVLNG 111 (240)
T ss_dssp HHHHHHHHTTEEEEEECCHHHHHTTCHHHHHHHHHHHHHHHSSCEEEH-------------------------HHHHHHH
T ss_pred HHHHHhccCCCCEEEECCcHHHHhcccchHHHHHHHHHhccCCCEECH-------------------------HHHHHHH
Confidence 34445555689888864333332 23344555668888852 4788888
Q ss_pred HHhcCCcEEEEEEEcCCCCcccHHHHHHHHhhcCeEEEEeeccCCCC-----CCChhHHHHHHHH-H-hcCCceEEEEec
Q 006567 159 VSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPES-----GVNTGYVMDLLVK-V-ALMESRVIVLHV 231 (640)
Q Consensus 159 l~~~~w~~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~-----~~~~~~~~~~l~~-l-~~~~~~vivl~~ 231 (640)
++..|-++|+++.. |.......+++.+++.|+++.......... ..+...+.+.+++ + ...++|.||+.|
T Consensus 112 l~~~g~~rvglltp---y~~~~~~~~~~~l~~~Giev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~adaivL~C 188 (240)
T 3ixl_A 112 LRALGVRRVALATA---YIDDVNERLAAFLAEESLVPTGCRSLGITGVEAMARVDTATLVDLCVRAFEAAPDSDGILLSS 188 (240)
T ss_dssp HHHTTCSEEEEEES---SCHHHHHHHHHHHHHTTCEEEEEEECCCCCHHHHHTCCHHHHHHHHHHHHHTSTTCSEEEEEC
T ss_pred HHHhCCCEEEEEeC---ChHHHHHHHHHHHHHCCCEEeccccCCCCCcchhhcCCHHHHHHHHHHHhhcCCCCCEEEEeC
Confidence 88899999999974 666667788888999999887554433221 1235567777888 7 677899999988
Q ss_pred ChhhHHHHHH
Q 006567 232 SPSLGFQVFS 241 (640)
Q Consensus 232 ~~~~~~~il~ 241 (640)
..-....++.
T Consensus 189 T~l~~l~~i~ 198 (240)
T 3ixl_A 189 GGLLTLDAIP 198 (240)
T ss_dssp TTSCCTTHHH
T ss_pred CCCchhhhHH
Confidence 6544333333
No 149
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=94.30 E-value=0.037 Score=54.21 Aligned_cols=99 Identities=10% Similarity=0.076 Sum_probs=63.5
Q ss_pred CeEEEEeecCCCccceEEeecCCcceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHhhHHHHHHcCcccEEEee-
Q 006567 465 KLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGD- 543 (640)
Q Consensus 465 ~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~~~~~- 543 (640)
++|+|++. +.++|+.+.. .-.++++.|++++|.+ +++... .+|.+++..|.+|++|+++.+
T Consensus 4 ~~l~iG~~--p~~~p~~~~~--------~~~~l~~~l~k~lG~~--ve~~~~------~~~~~~i~al~~G~vDi~~~~~ 65 (310)
T 3n5l_A 4 PVINFGII--STESSQNLKS--------IWEPFLKDMSQQTGYQ--VKAFFA------PDYAGIIQGMRFDKVDIAWYGN 65 (310)
T ss_dssp CEEEEEEC--CSSCHHHHHH--------HHHHHHHHHHHHHSSE--EEEECC------SSHHHHHHHHHTTSCSEEECCH
T ss_pred cEEEEEEe--cCCCHHHHHH--------HHHHHHHHHHHHhCCC--EEEEeC------CCHHHHHHHHHcCCCCEEEECc
Confidence 67999997 4455544332 1247999999999998 555442 569999999999999999754
Q ss_pred eeeecc--ccceEEeCcccc-----ccceEEEEecCCCCcCcceec
Q 006567 544 ITIVTN--RTKIVDFSQPYA-----ASGLVVVVPFRKLNTGAWAFL 582 (640)
Q Consensus 544 ~~~t~~--R~~~vdfs~p~~-----~~~~~il~~~~~~~~~~~~~l 582 (640)
.+.... |.....|+.++. .....+++++.. ....+..|
T Consensus 66 ~~~~~~~~~~~~~~~a~~~~~~g~~~~~~~lvv~~ds-~i~sl~DL 110 (310)
T 3n5l_A 66 KAAMEAVDRAHGEIFAQTVAASGAPGYWSLLIANKDS-KIDSLEDM 110 (310)
T ss_dssp HHHHHHHHHSCEEEEEEEEETTCCSEEEEEEEEETTC-SCCSHHHH
T ss_pred HHHHHHHHhcCCeEEEEEeccCCCcceEEEEEEECCC-CCCCHHHH
Confidence 444333 444555654421 113467777765 33333444
No 150
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=93.37 E-value=0.094 Score=51.56 Aligned_cols=101 Identities=14% Similarity=0.095 Sum_probs=63.0
Q ss_pred CCCeEEEEeecCCCccceEEeecCCcceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHhhHHHHHHcCcccEEEe
Q 006567 463 NGKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVG 542 (640)
Q Consensus 463 ~~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~~~~ 542 (640)
+.++|++++. |.+.|... ...--+|++.|++++|.+ +++... .+|.+++..|.+|++|+++.
T Consensus 12 ~~~~l~~Gv~--p~~~~~~~--------~~~~~~l~~~L~k~lG~~--ve~~~~------~~~~~~i~aL~~G~vDia~~ 73 (321)
T 3p7i_A 12 QEKALNFGII--STESQQNL--------KPQWTPFLQDMEKKLGVK--VNAFFA------PDYAGIIQGMRFNKVDIAWY 73 (321)
T ss_dssp --CCEEEEEC--CSSCHHHH--------HHHHHHHHHHHHHHHTSC--EEEECC------SSHHHHHHHHHTTSCSEEEC
T ss_pred cCCcEEEEEe--cCCCHHHH--------HHHHHHHHHHHHHHHCCC--EEEEec------CCHHHHHHHHHcCCCcEEEE
Confidence 3578999997 33333222 222247899999999998 555542 56999999999999999975
Q ss_pred -eeeeecc--ccceEEeCcccc-----ccceEEEEecCCCCcCcceec
Q 006567 543 -DITIVTN--RTKIVDFSQPYA-----ASGLVVVVPFRKLNTGAWAFL 582 (640)
Q Consensus 543 -~~~~t~~--R~~~vdfs~p~~-----~~~~~il~~~~~~~~~~~~~l 582 (640)
+.+++.. |.....|..|+. .....+++++.. ....+..|
T Consensus 74 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~y~~~lvv~~ds-~i~sl~DL 120 (321)
T 3p7i_A 74 GNLSAMEAVDRANGQVFAQTVAADGSPGYWSVLIVNKDS-PINNLNDL 120 (321)
T ss_dssp CHHHHHHHHHHSCEEEEEEEEETTCCSSBCEEEEEETTC-SCCSHHHH
T ss_pred ChHHHHHHHHhcCCEEEEEEeccCCCcceEEEEEEECCC-CCCCHHHH
Confidence 4555544 344455654321 113477777765 33333444
No 151
>2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A
Probab=91.31 E-value=2.2 Score=40.51 Aligned_cols=86 Identities=15% Similarity=0.099 Sum_probs=55.9
Q ss_pred HHHHHHHHhcCCcEEEEEEEcCCCCcccHHHHHHHHhhcCeEEEEeeccCCCC-----CCChhHHHHHHHHHhcCCceEE
Q 006567 153 TAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPES-----GVNTGYVMDLLVKVALMESRVI 227 (640)
Q Consensus 153 ~al~~ll~~~~w~~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~-----~~~~~~~~~~l~~l~~~~~~vi 227 (640)
.++++.++..+-++|+++. .|.......+++.+++.|+++.......... ..+...+...++++...++|+|
T Consensus 135 ~A~~~al~~~g~~rvgvlt---p~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~g~~~~~~l~~~~~~l~~~gadaI 211 (273)
T 2xed_A 135 GALVEGLRALDAQRVALVT---PYMRPLAEKVVAYLEAEGFTISDWRALEVADNTEVGCIPGEQVMAAARSLDLSEVDAL 211 (273)
T ss_dssp HHHHHHHHHTTCCEEEEEE---CSCHHHHHHHHHHHHHTTCEEEEEEECCCCBHHHHHTCCHHHHHHHHHHSCCTTCSEE
T ss_pred HHHHHHHHHcCCCeEEEEc---CChhhhHHHHHHHHHHCCCEEeccccCCCccchhhcccCHHHHHHHHHHHhhCCCCEE
Confidence 5566666667889999996 3444445577888888898876544333210 1234557777778877789999
Q ss_pred EEe-cChhhHHHHHH
Q 006567 228 VLH-VSPSLGFQVFS 241 (640)
Q Consensus 228 vl~-~~~~~~~~il~ 241 (640)
|+. |..-....+..
T Consensus 212 vLg~CT~l~~~~~~~ 226 (273)
T 2xed_A 212 VISCAVQMPSLPLVE 226 (273)
T ss_dssp EEESSSSSCCTTHHH
T ss_pred EEcCCCCcchHHhHH
Confidence 999 86644333333
No 152
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=90.25 E-value=3.1 Score=41.18 Aligned_cols=89 Identities=10% Similarity=-0.036 Sum_probs=66.7
Q ss_pred EEEEEEeecCCccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcCcEEEEcCCChHHHHH
Q 006567 32 VNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTVAHI 111 (640)
Q Consensus 32 i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aiiGp~~s~~~~~ 111 (640)
=+||.+.............|+..+++++| |..++.+.+..+-.++..+.+.+..++++++.+|+...+.. .
T Consensus 150 ~kIGfVgg~~~p~v~~~~~GF~~G~k~~n------p~i~v~~~~~g~~~d~~kg~~~a~~l~~~G~DvIf~~~d~~---G 220 (356)
T 3s99_A 150 GIAGYIGSVPVPEVVQGINSFMLGAQSVN------PDFRVKVIWVNSWFDPGKEADAAKALIDQGVDIITQHTDST---A 220 (356)
T ss_dssp CEEEEEECCCCHHHHHHHHHHHHHHHTTC------TTCEEEEEECSSSCCHHHHHHHHHHHHHTTCSEEEESSSSS---H
T ss_pred CEEEEECCCccHHHHHHHHHHHHHHHHHC------CCCEEEEEECCCCCChHHHHHHHHHHHhCCCcEEEECCCch---H
Confidence 47888887654333456789999999887 46777777666557899999999999999999998765543 3
Q ss_pred HHHhhccCCceEEecccC
Q 006567 112 VSYVSNELQVPLLSFGVT 129 (640)
Q Consensus 112 v~~~~~~~~iP~is~~~~ 129 (640)
+...+.+.++-+|.+...
T Consensus 221 v~~aa~e~Gv~vIG~D~d 238 (356)
T 3s99_A 221 AIQVAHDRGIKAFGQASD 238 (356)
T ss_dssp HHHHHHHTTCEEEEEESC
T ss_pred HHHHHHHcCCEEEEEcCc
Confidence 456666788988876544
No 153
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=90.17 E-value=4.7 Score=39.16 Aligned_cols=126 Identities=10% Similarity=0.097 Sum_probs=77.1
Q ss_pred EEEEEeecCCccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcCcEEEEcCCChHHHHHH
Q 006567 33 NVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTVAHIV 112 (640)
Q Consensus 33 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aiiGp~~s~~~~~v 112 (640)
+||.+.............|++.++++.| +..++...+..+-.++..+.+++.+++++++.+|+...+.. +..+
T Consensus 131 ~Ig~i~g~~~~~~~~r~~Gf~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~~a~~ll~~~~daI~~~~d~~-a~Gv 203 (318)
T 2fqx_A 131 AVGFIVGMELGMMPLFEAGFEAGVKAVD------PDIQVVVEVANTFSDPQKGQALAAKLYDSGVNVIFQVAGGT-GNGV 203 (318)
T ss_dssp EEEEEESCCSTTTHHHHHHHHHHHHHHC------TTCEEEEEECSCSSCHHHHHHHHHHHHHTTCCEEEEECGGG-HHHH
T ss_pred EEEEEeCcccHHHHHHHHHHHHHHHHHC------CCCEEEEEEccCccCHHHHHHHHHHHHHCCCcEEEECCCCC-chHH
Confidence 6788866543334566899999999876 34555554433334677888889999998999999755443 2223
Q ss_pred HHhhcc-----CCceEEecccCCCCCCCC---CCCcEEEecCCchHHHHHHHHHHHhcCCc
Q 006567 113 SYVSNE-----LQVPLLSFGVTDPTLSSL---QYPFFVRTTQSDSYQMTAVAEMVSYYGWN 165 (640)
Q Consensus 113 ~~~~~~-----~~iP~is~~~~~~~l~~~---~~~~~~r~~p~~~~~~~al~~ll~~~~w~ 165 (640)
...+.+ .++-+|.+.........- ..+.+..+..+....+...++.+..-.|+
T Consensus 204 ~~a~~e~g~~P~dv~viG~D~~~~~~~~~~~~~~~~LTsv~~~~~~~~~~a~~~~~~g~~~ 264 (318)
T 2fqx_A 204 IKEARDRRLNGQDVWVIGVDRDQYMDGVYDGSKSVVLTSMVKRADVAAERISKMAYDGSFP 264 (318)
T ss_dssp HHHHHHHHHTTCCCEEEEEESCCGGGGBCSSSCBSEEEEEEECHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHhhhhccCCcEEEEEecchhhhccccCCCCeEEEEEEEEHHHHHHHHHHHHHcCCCC
Confidence 333333 678888765432211100 22455555556666677777766655554
No 154
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=89.65 E-value=0.13 Score=28.39 Aligned_cols=16 Identities=25% Similarity=0.569 Sum_probs=13.4
Q ss_pred ccchhhhHhHhhhhhh
Q 006567 621 RQVITILWFSLSTLFF 636 (640)
Q Consensus 621 ~~~~~~~w~~~~~~~~ 636 (640)
..+..++||+||++|=
T Consensus 7 ~~l~aa~wF~WGvlln 22 (27)
T 2nr1_A 7 LTLSSAMWFSWGVLLN 22 (27)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred eehhhhHHHhhHhhee
Confidence 4578999999999873
No 155
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=88.63 E-value=0.5 Score=45.74 Aligned_cols=79 Identities=6% Similarity=0.004 Sum_probs=59.1
Q ss_pred CcceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHhhHHHHHHcCcccEEEee-eeee---ccccceEEeCccccc
Q 006567 487 SDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGD-ITIV---TNRTKIVDFSQPYAA 562 (640)
Q Consensus 487 ~~~~~G~~~dl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~~~~~-~~~t---~~R~~~vdfs~p~~~ 562 (640)
+..+.|+.+.+-+-+.++.|++ +++... +....++..|.+|++|+++++ .... .++.....++.++..
T Consensus 14 ~~~~~~~~va~~~g~~~~~Gl~--v~~~~~------~~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 85 (302)
T 3ix1_A 14 NAVHTFLYVAIENGYFAEEGLD--VDIVFP------TNPTDPIQLTASGAIPLALSYQPDVILARSKDLPVVSVASVVRS 85 (302)
T ss_dssp CGGGHHHHHHHHTTHHHHTTEE--EEEECC------SSTTHHHHHHHHTSCSEEEECHHHHHHHHHTTCCEEEEEEEECS
T ss_pred CcccHHHHHHHHcChHHHcCCc--EEEecC------CCCchHHHHHHCCCCCEEecCHHHHHHHHHCCCCEEEEEEEecc
Confidence 5667888888888889999988 455442 335589999999999999887 2223 334457777777777
Q ss_pred cceEEEEecCC
Q 006567 563 SGLVVVVPFRK 573 (640)
Q Consensus 563 ~~~~il~~~~~ 573 (640)
.+..+++++..
T Consensus 86 ~~~~l~~~~~s 96 (302)
T 3ix1_A 86 PLNHVMFLAEQ 96 (302)
T ss_dssp CCEEEEEEGGG
T ss_pred CCEEEEEECCC
Confidence 88899998764
No 156
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=88.50 E-value=0.19 Score=50.06 Aligned_cols=80 Identities=11% Similarity=0.000 Sum_probs=53.4
Q ss_pred HHHHHHHhCCCCccEEEEEcCCCCCCCCHhhHHHHHHcCcccEEEeeeeee----ccccceEEeCccccccceEEEEecC
Q 006567 497 VFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDITIV----TNRTKIVDFSQPYAASGLVVVVPFR 572 (640)
Q Consensus 497 l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~~~~~~~~t----~~R~~~vdfs~p~~~~~~~il~~~~ 572 (640)
+.+.+++. |+++++..... .+++..++..|.+|++|+++.+.+.. .++.+...++.++...+..+++++.
T Consensus 35 l~~~~~~~-G~~v~~~~~~~-----~g~~~~~~~al~~G~~D~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~lvv~~~ 108 (348)
T 3uif_A 35 FPEELRKQ-GIKVEWVPAAM-----ASVGPVINEGFASGKIDFGIYGDLPPIILNASKPTVQLVAPWGTTSNSYLVVPKN 108 (348)
T ss_dssp HHHHHHHT-TEEEEEEEECT-----TCHHHHHHHHHHTTCCCEEEEESHHHHHHHHHSCCEEEEEECCCCCCCEEEEETT
T ss_pred HHHHHHhc-CCeEEEEeccc-----CCCcHHHHHHHHcCCCCEEecCcHHHHHHHhCCCCEEEEEeccCCCceEEEEECC
Confidence 44566665 87744422432 13467799999999999998665544 5667777787788888899999876
Q ss_pred CCCcCcceecc
Q 006567 573 KLNTGAWAFLR 583 (640)
Q Consensus 573 ~~~~~~~~~l~ 583 (640)
. .......|+
T Consensus 109 s-~i~s~~DLk 118 (348)
T 3uif_A 109 S-TAKSIKDLK 118 (348)
T ss_dssp C-CCCSGGGGT
T ss_pred C-CCCCHHHcC
Confidence 5 233334443
No 157
>2eq5_A 228AA long hypothetical hydantoin racemase; structural genomics, NPPSFA, national project on P structural and functional analyses; 2.20A {Pyrococcus horikoshii}
Probab=86.39 E-value=4.7 Score=36.91 Aligned_cols=165 Identities=14% Similarity=0.085 Sum_probs=80.4
Q ss_pred eEEEEEEeecC-CccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCC----ChH-------HHHHHHHHhHhcCcE
Q 006567 31 VVNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNC----SGF-------IGMVEALRFMETDIV 98 (640)
Q Consensus 31 ~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~----~~~-------~a~~~a~~l~~~~v~ 98 (640)
..+||+|.|.+ ... . ...-...++.+. +|+..+.+.....+. +.. ...+.+..+...|+.
T Consensus 6 ~~~ig~i~p~~~~~~-~-e~~~~~~~~~~~------~p~~~i~~~~~p~g~~~~~~~~~~~~~~~~l~~~~~~l~~~g~d 77 (228)
T 2eq5_A 6 KYTIGLIRVITLEDK-E-ILNLHGRIIESA------FPELKVVSRCIEDQPKGIYNEETEREAEPKIIRLAKEFEREGVD 77 (228)
T ss_dssp CEEEEEEESSCCCCH-H-HHTHHHHHHHHH------CTTEEEEEEECSSCTTCCSSHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred ceEEEEEeccCccCH-H-HHHHHHHHHHhh------CCCCeEEEEeCCCCchhccccccHHHhHHHHHHHHHHHHHCCCC
Confidence 47899999987 322 1 111111222222 256666664433221 111 111234445456888
Q ss_pred EEEcCCChHHHHHHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCCCCc
Q 006567 99 AIIGPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGR 178 (640)
Q Consensus 99 aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~~~~~g~ 178 (640)
+|+-+-++. ..+..+-+..++|+++.. ++.++.....+ ++|+++......
T Consensus 78 ~iviaCnta--~~~~~l~~~~~iPvi~i~-------------------------~~~~~~a~~~~-~rigVlat~~t~-- 127 (228)
T 2eq5_A 78 AIIISCAAD--PAVEKVRKLLSIPVIGAG-------------------------SSVSALALAYG-RRVGVLNLTEET-- 127 (228)
T ss_dssp EEEECSTTC--TTHHHHHHHCSSCEEEHH-------------------------HHHHHHHHTTC-SSEEEECSSSCC--
T ss_pred EEEEeCCch--HHHHHHHHhCCCCEeCcc-------------------------HHHHHHHHHhC-CeEEEEecCccc--
Confidence 887644333 334445556688887531 11111122345 788888764322
Q ss_pred ccHHHHHHHH-hhcCeEEEEeec--c-CCCCCCChhHHHHHHHHHhcCCceEEEEecChhh
Q 006567 179 NGVSALNDKL-AERRCRISYKSG--I-PPESGVNTGYVMDLLVKVALMESRVIVLHVSPSL 235 (640)
Q Consensus 179 ~~~~~~~~~~-~~~g~~v~~~~~--~-~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~ 235 (640)
...+++.+ ++.|..+..... + ..........+...++++.+.++|+||+.|..-.
T Consensus 128 --~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~~~l~~~~~~l~~~~~d~IvLgCT~~~ 186 (228)
T 2eq5_A 128 --PKVIRSILGNNLIAEDHPSGVSNTLDLLTDWGRREVINAAKRLKEKGVEVIALGCTGMS 186 (228)
T ss_dssp --CHHHHHHHGGGEEEEECCTTCCSGGGGGSHHHHHHHHHHHHHHHHTTCSEEEECCTHHH
T ss_pred --HHHHHHHHHHHhCccccCCceeeHHHhcChHHHHHHHHHHHHHHHcCCCEEEECCCCcc
Confidence 13466777 666655321100 0 0000001233555666666668888888876543
No 158
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=86.33 E-value=8.7 Score=36.71 Aligned_cols=121 Identities=8% Similarity=-0.060 Sum_probs=74.9
Q ss_pred EEEEEeecCCccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcCcEEEEcCCChHHHHHH
Q 006567 33 NVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTVAHIV 112 (640)
Q Consensus 33 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aiiGp~~s~~~~~v 112 (640)
+||.+....... ...|++.++++.| +. +..+.+..+-.++..+.+++.+++++++.+|+...+.. +..+
T Consensus 128 ~Ig~i~g~~~~~---r~~Gf~~~~~~~~------~~-~~~~~~~~~~~~~~~g~~~a~~ll~~~~daI~~~~D~~-a~Gv 196 (296)
T 2hqb_A 128 KVGVIAAFPWQP---EVEGFVDGAKYMN------ES-EAFVRYVGEWTDADKALELFQELQKEQVDVFYPAGDGY-HVPV 196 (296)
T ss_dssp EEEEEESCTTCH---HHHHHHHHHHHTT------CC-EEEEEECSSSSCHHHHHHHHHHHHTTTCCEEECCCTTT-HHHH
T ss_pred eEEEEcCcCchh---hHHHHHHHHHHhC------CC-eEEEEeeccccCHHHHHHHHHHHHHCCCcEEEECCCCC-CHHH
Confidence 688887653221 6789999998876 24 44444433334677888889999988999999755543 3334
Q ss_pred HHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHHhcCCcE
Q 006567 113 SYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNA 166 (640)
Q Consensus 113 ~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~ 166 (640)
...+.+.++-+|.+......+ ...+.+..+..+....+...++.+..-.|+.
T Consensus 197 ~~a~~e~Gv~viG~D~~~~~~--~~~~~LTsv~~~~~~~~~~a~~~~~~g~~~~ 248 (296)
T 2hqb_A 197 VEAIKDQGDFAIGYVGDQADL--GGSTILTSTVQHVDDLYVLVAKRFQEGKLES 248 (296)
T ss_dssp HHHHHHHTCEEEEEESCCSSS--SCSSEEEEEEECHHHHHHHHHHHTTTTCCCC
T ss_pred HHHHHHcCCEEEEEecchhhh--CCCeEEEEEEEEhHHHHHHHHHHHHcCCCCC
Confidence 455566678888765421111 1124555555555556666666655556754
No 159
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica}
Probab=85.70 E-value=2.3 Score=41.67 Aligned_cols=64 Identities=14% Similarity=0.094 Sum_probs=50.0
Q ss_pred HHhCCCCccEEEEEcCCCCCCCCHhhHHHHHHcCcccEEEeeeeee----ccccceEEeCccccccceEEEEecCC
Q 006567 502 VNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDITIV----TNRTKIVDFSQPYAASGLVVVVPFRK 573 (640)
Q Consensus 502 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~~~~~~~~t----~~R~~~vdfs~p~~~~~~~il~~~~~ 573 (640)
.++.|++ +++... ++|..++..|.+|++|+++++.... .++.....++.++...+..+++++..
T Consensus 59 ~~~~g~~--v~~~~~------~~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 126 (346)
T 3qsl_A 59 FKDEGLD--VSIADF------AGGSKALQAVVGGSADVVSGAFEHTLSLQAKGQFYRAFALQGRAPMIGVGVSKKN 126 (346)
T ss_dssp HHHTTCE--EEEEEC------SSHHHHHHHHHTTSCSEEEEETHHHHHHHHTTCCEEEEEESBSSCCEEEEEETTT
T ss_pred hHhhCCe--EEEEec------CChHHHHHHHHCCCCCEEccchHHHHHHHhCCCCeEEEEecccCCCcEEEEecCc
Confidence 4667888 555543 5699999999999999998876554 56778888888887778888888754
No 160
>2dgd_A 223AA long hypothetical arylmalonate decarboxylas; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii}
Probab=84.47 E-value=7.4 Score=35.42 Aligned_cols=87 Identities=7% Similarity=0.010 Sum_probs=56.2
Q ss_pred HHHHHHHHHhcCCcEEEEEEEcCCCCcccHHHHHHHHhhcCeEEEEeeccCCCC-----CCChhHHHHHHHHHhcC--Cc
Q 006567 152 MTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPES-----GVNTGYVMDLLVKVALM--ES 224 (640)
Q Consensus 152 ~~al~~ll~~~~w~~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~-----~~~~~~~~~~l~~l~~~--~~ 224 (640)
..++++.++..+-++|+++. .|.......+++.+++.|+++.......... ..+...+...++++.+. ++
T Consensus 96 ~~a~~~a~~~~g~~rvgvlt---~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ga 172 (223)
T 2dgd_A 96 EESVYELLKKLNVRKLWIGT---PYIKERTLEEVEWWRNKGFEIVGYDGLGKIRGIDISNTPIFTIYRLVKRHLNEVLKA 172 (223)
T ss_dssp HHHHHHHHHHTTCCEEEEEE---SSCHHHHHHHHHHHHTTTCEEEEEEECCCCSHHHHHTCCHHHHHHHHHTTHHHHTTS
T ss_pred HHHHHHHHHHcCCCeEEEEe---CCchHHHHHHHHHHHhCCcEEecccCCCCCCcchhhccCHHHHHHHHHHHhcccCCC
Confidence 46666667777889999995 3444455577788888898876544333210 01244567777777667 89
Q ss_pred eEEEEecChhhHHHHHH
Q 006567 225 RVIVLHVSPSLGFQVFS 241 (640)
Q Consensus 225 ~vivl~~~~~~~~~il~ 241 (640)
++||+.|..-....+..
T Consensus 173 daIvLgCT~l~~~~~~~ 189 (223)
T 2dgd_A 173 DAVYIACTALSTYEAVQ 189 (223)
T ss_dssp SEEEECCTTSCCTTHHH
T ss_pred CEEEEeCCcccHHHHHH
Confidence 99999876544333333
No 161
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=83.72 E-value=23 Score=31.38 Aligned_cols=158 Identities=14% Similarity=0.095 Sum_probs=97.5
Q ss_pred EEEEEEeecCCccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcCcEEEEcCCChHHHHH
Q 006567 32 VNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTVAHI 111 (640)
Q Consensus 32 i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aiiGp~~s~~~~~ 111 (640)
.+|.++.|.. .....++-...+.+ ..+.+.. .+-..++..+.++ .+++.+||. ...++..
T Consensus 5 ~~I~~iapy~-----~l~~~~~~i~~e~~--------~~i~i~~----~~l~~~v~~a~~~-~~~~dVIIS--RGgta~~ 64 (196)
T 2q5c_A 5 LKIALISQNE-----NLLNLFPKLALEKN--------FIPITKT----ASLTRASKIAFGL-QDEVDAIIS--RGATSDY 64 (196)
T ss_dssp CEEEEEESCH-----HHHHHHHHHHHHHT--------CEEEEEE----CCHHHHHHHHHHH-TTTCSEEEE--EHHHHHH
T ss_pred CcEEEEEccH-----HHHHHHHHHHhhhC--------CceEEEE----CCHHHHHHHHHHh-cCCCeEEEE--CChHHHH
Confidence 5788888864 23333443444432 2444333 3456788888888 889999995 2223333
Q ss_pred HHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCCCCcccHHHHHHHHhhc
Q 006567 112 VSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAER 191 (640)
Q Consensus 112 v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~~~~~g~~~~~~~~~~~~~~ 191 (640)
+. +..++|+|... .+..+..+++...-++. ++++++...+.. ..++.+.+.+
T Consensus 65 lr---~~~~iPVV~I~------------------~s~~Dil~al~~a~~~~--~kIavvg~~~~~--~~~~~~~~ll--- 116 (196)
T 2q5c_A 65 IK---KSVSIPSISIK------------------VTRFDTMRAVYNAKRFG--NELALIAYKHSI--VDKHEIEAML--- 116 (196)
T ss_dssp HH---TTCSSCEEEEC------------------CCHHHHHHHHHHHGGGC--SEEEEEEESSCS--SCHHHHHHHH---
T ss_pred HH---HhCCCCEEEEc------------------CCHhHHHHHHHHHHhhC--CcEEEEeCcchh--hHHHHHHHHh---
Confidence 33 44679999742 12344567766665443 489988654432 2456666665
Q ss_pred CeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecChhhHHHHHHHHHHcCCc
Q 006567 192 RCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMM 249 (640)
Q Consensus 192 g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~il~~a~~~gl~ 249 (640)
|+++..... .+..+....++++++.+.++||-.+. ..+.|++.||.
T Consensus 117 ~~~i~~~~~------~~~~e~~~~i~~l~~~G~~vvVG~~~------~~~~A~~~Gl~ 162 (196)
T 2q5c_A 117 GVKIKEFLF------SSEDEITTLISKVKTENIKIVVSGKT------VTDEAIKQGLY 162 (196)
T ss_dssp TCEEEEEEE------CSGGGHHHHHHHHHHTTCCEEEECHH------HHHHHHHTTCE
T ss_pred CCceEEEEe------CCHHHHHHHHHHHHHCCCeEEECCHH------HHHHHHHcCCc
Confidence 455554322 23678899999999999999887532 35677888875
No 162
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=82.99 E-value=6.2 Score=39.57 Aligned_cols=89 Identities=18% Similarity=0.112 Sum_probs=63.3
Q ss_pred HHHHHHHHhcCCcEEEEEEEcCCCCc--ccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEe
Q 006567 153 TAVAEMVSYYGWNAVSVIFVDNEYGR--NGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLH 230 (640)
Q Consensus 153 ~al~~ll~~~~w~~v~ii~~~~~~g~--~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~ 230 (640)
..+.++++.++.+++.++++...... ...+.+.+.+++.|+++..-..+.++ .+.......++.+++.++|.||-.
T Consensus 22 ~~l~~~l~~~g~~~~livtd~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~--p~~~~v~~~~~~~~~~~~d~IIav 99 (387)
T 3bfj_A 22 SVVGERCQLLGGKKALLVTDKGLRAIKDGAVDKTLHYLREAGIEVAIFDGVEPN--PKDTNVRDGLAVFRREQCDIIVTV 99 (387)
T ss_dssp GGHHHHHHHTTCSEEEEECCTTTC--CCSSHHHHHHHHHHTTCEEEEECCCCSS--CBHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHcCCCEEEEEECcchhhccchHHHHHHHHHHHcCCeEEEECCccCC--CCHHHHHHHHHHHHhcCCCEEEEe
Confidence 34566777788899998886554444 37899999999888876433334444 567788999999999999998866
Q ss_pred c--ChhhHHHHHHHH
Q 006567 231 V--SPSLGFQVFSVA 243 (640)
Q Consensus 231 ~--~~~~~~~il~~a 243 (640)
+ +.-|+..++...
T Consensus 100 GGGsv~D~aK~iA~~ 114 (387)
T 3bfj_A 100 GGGSPHDCGKGIGIA 114 (387)
T ss_dssp ESHHHHHHHHHHHHH
T ss_pred CCcchhhHHHHHHHH
Confidence 3 456666666554
No 163
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=81.05 E-value=2.8 Score=41.96 Aligned_cols=90 Identities=12% Similarity=0.072 Sum_probs=64.8
Q ss_pred HHHHHHHHhcCCcEEEEEEEcCCCCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEec-
Q 006567 153 TAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHV- 231 (640)
Q Consensus 153 ~al~~ll~~~~w~~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~- 231 (640)
+.+.++++.++.+++.+|++.........+.+.+.+++.|+.+..-..+.++ .+.......++.+++.++|.||-.+
T Consensus 20 ~~l~~~~~~~g~~~~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~--p~~~~v~~~~~~~~~~~~D~IIavGG 97 (383)
T 3ox4_A 20 EKAIKDLNGSGFKNALIVSDAFMNKSGVVKQVADLLKAQGINSAVYDGVMPN--PTVTAVLEGLKILKDNNSDFVISLGG 97 (383)
T ss_dssp HHHHHTTTTSCCCEEEEEEEHHHHHTTHHHHHHHHHHTTTCEEEEEEEECSS--CBHHHHHHHHHHHHHHTCSEEEEEES
T ss_pred HHHHHHHHHcCCCEEEEEECCchhhCchHHHHHHHHHHcCCeEEEECCccCC--CCHHHHHHHHHHHHhcCcCEEEEeCC
Confidence 5567778889999999998654332235788999999989877543344444 5677888899999999999888764
Q ss_pred -ChhhHHHHHHHHH
Q 006567 232 -SPSLGFQVFSVAK 244 (640)
Q Consensus 232 -~~~~~~~il~~a~ 244 (640)
+.-|+..++....
T Consensus 98 Gsv~D~aK~ia~~~ 111 (383)
T 3ox4_A 98 GSPHDCAKAIALVA 111 (383)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 4456666665544
No 164
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=80.67 E-value=17 Score=27.83 Aligned_cols=97 Identities=11% Similarity=0.126 Sum_probs=63.8
Q ss_pred EEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCCCCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHh
Q 006567 141 FVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVA 220 (640)
Q Consensus 141 ~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~ 220 (640)
+|-...++....+.++.-++..|. ++.++|+|.+- ....+.+ +.+..+|..+-.. .+..+|+..++++-
T Consensus 4 ifvvfssdpeilkeivreikrqgv-rvvllysdqde-krrrerl-eefekqgvdvrtv--------edkedfrenireiw 72 (162)
T 2l82_A 4 IFVVFSSDPEILKEIVREIKRQGV-RVVLLYSDQDE-KRRRERL-EEFEKQGVDVRTV--------EDKEDFRENIREIW 72 (162)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTTC-EEEEEECCSCH-HHHHHHH-HHHHTTTCEEEEC--------CSHHHHHHHHHHHH
T ss_pred EEEEecCCHHHHHHHHHHHHhCCe-EEEEEecCchH-HHHHHHH-HHHHHcCCceeee--------ccHHHHHHHHHHHH
Confidence 455556777777888888888775 56678877642 1122233 4456778876533 24678888887775
Q ss_pred c--CCceEEEEec--ChhhHHHHHHHHHHcCC
Q 006567 221 L--MESRVIVLHV--SPSLGFQVFSVAKYLGM 248 (640)
Q Consensus 221 ~--~~~~vivl~~--~~~~~~~il~~a~~~gl 248 (640)
. .+.+++++.. +..-+..++..|++.|.
T Consensus 73 erypqldvvvivttddkewikdfieeakergv 104 (162)
T 2l82_A 73 ERYPQLDVVVIVTTDDKEWIKDFIEEAKERGV 104 (162)
T ss_dssp HHCTTCCEEEEEECCCHHHHHHHHHHHHHTTC
T ss_pred HhCCCCcEEEEEecCcHHHHHHHHHHHHhcCc
Confidence 4 4566666653 34457789999999885
No 165
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis}
Probab=78.92 E-value=3.2 Score=40.56 Aligned_cols=99 Identities=9% Similarity=0.024 Sum_probs=65.1
Q ss_pred CeEEEEeecCCCccceEEeecCCcceeeeeHHHHHHHHHh----CCCCccEEEEEcCCCCCCCCHhhHHHHHHcCcccEE
Q 006567 465 KLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNL----LPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAV 540 (640)
Q Consensus 465 ~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~----l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~~ 540 (640)
++|++++.. . .+.+..+...|.+.+.+. +|++ ++.... +...+.+..+.+|++|++
T Consensus 32 ~~i~i~~g~-----------~-gG~~~~~~~~la~~l~~~~~~~~g~~--v~v~~~------~g~~~~i~~l~~g~~D~~ 91 (327)
T 4ddd_A 32 EYILIGTGS-----------M-TGVYYPIGGSICRFIASDYGKDNKII--CSISST------TGSVYNLNSIRYSNMDIS 91 (327)
T ss_dssp EEEEEECCC-----------T-TSSHHHHHHHHHHHHHHHHGGGTSEE--EEEECC------CCHHHHHHHHHTTSCSEE
T ss_pred eEEEEEeCC-----------C-CCHHHHHHHHHHHHHHhccCCCCCeE--EEEEec------CcHHHHHHHHHcCCCcEE
Confidence 567777741 1 455666777788888887 6776 555442 447888999999999999
Q ss_pred Eeeeeeec---------c---ccceEEeCccccccceEEEEecCCCCcCcceeccc
Q 006567 541 VGDITIVT---------N---RTKIVDFSQPYAASGLVVVVPFRKLNTGAWAFLRP 584 (640)
Q Consensus 541 ~~~~~~t~---------~---R~~~vdfs~p~~~~~~~il~~~~~~~~~~~~~l~p 584 (640)
+....... + ..+.+.+-.+++.....+++++.. ....+..|++
T Consensus 92 ~~~~~~~~~a~~g~~~f~~~~~~~d~~~v~~~~~~~~~lvv~~ds-~i~sl~DL~g 146 (327)
T 4ddd_A 92 IVQSDLEYYAYNGLGFYEKMLPMDNLRMLASLHKEYLTIVVKKSS-NISVIDDIKG 146 (327)
T ss_dssp EEEHHHHHHHHHTCGGGTTSCCCTTEEEEEEEEEEEEEEEEETTS-SCCSGGGGTT
T ss_pred EECcHHHHHHHhCcCcccccCCCcchhehhccCCccEEEEEECCC-CCCCHHHhCC
Confidence 87654321 1 224455556777788899998765 3344445543
No 166
>1jfl_A Aspartate racemase; alpha-beta structure, HOMO-dimer, homologous domains, isomer; 1.90A {Pyrococcus horikoshii} SCOP: c.78.2.1 c.78.2.1 PDB: 2dx7_A* 1iu9_A
Probab=77.02 E-value=7.5 Score=35.54 Aligned_cols=38 Identities=24% Similarity=0.309 Sum_probs=24.5
Q ss_pred HHHHHhHhcCcEEEEcCCChHHHHHHHHhhccCCceEEe
Q 006567 87 VEALRFMETDIVAIIGPQCSTVAHIVSYVSNELQVPLLS 125 (640)
Q Consensus 87 ~~a~~l~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is 125 (640)
+.+..+.+.|+.+|+-+-++.. ..+..+-+..++|++.
T Consensus 65 ~~~~~l~~~g~d~iviaCnTa~-~~~~~l~~~~~iPvi~ 102 (228)
T 1jfl_A 65 WTAKRLEECGADFIIMPCNTAH-AFVEDIRKAIKIPIIS 102 (228)
T ss_dssp HHHHHHHHHTCSEEECSCTGGG-GGHHHHHHHCSSCBCC
T ss_pred HHHHHHHHcCCCEEEEcCccHH-HHHHHHHHhCCCCEec
Confidence 4455555569999887655554 4455555666888885
No 167
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=76.36 E-value=5.4 Score=38.68 Aligned_cols=65 Identities=15% Similarity=0.162 Sum_probs=41.3
Q ss_pred HHHhC-CCCccEEEEEcCCCCCCCCHhhHHHHHHcCcccEEEeeeee-----eccccceEEeCccccccceEEEEecCC
Q 006567 501 AVNLL-PYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDITI-----VTNRTKIVDFSQPYAASGLVVVVPFRK 573 (640)
Q Consensus 501 i~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~~~~~~~~-----t~~R~~~vdfs~p~~~~~~~il~~~~~ 573 (640)
+.+.+ |.+ +++... .++..++..|..|++|+++.+.+. ...+.-.+.++.++...+..+++++..
T Consensus 51 ~~~~~~g~~--v~~~~~------~~~~~~~~al~~G~~D~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~lvv~~~s 121 (324)
T 3ksx_A 51 LEQRFPRTK--ITWVEF------PAGPQLLEALNVGSIDLGGAGDIPPLFAQAAGADLLYVGWVPPTPKAETILVPSKS 121 (324)
T ss_dssp HHHHCTTSE--EEEEEE------SSHHHHHHHHHTTSCSEEEEESHHHHHHHHTTCCEEEEEEECCCGGGEEEEEETTC
T ss_pred HHHhcCCCc--eEEEEC------CCHHHHHHHHHCCCCCEEeecCHHHHHHHhcCCCEEEEEEecCCCCceEEEEeCCC
Confidence 44554 777 455443 468999999999999998665431 122223333344555567889988754
No 168
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=74.04 E-value=5.7 Score=39.83 Aligned_cols=90 Identities=13% Similarity=0.114 Sum_probs=63.2
Q ss_pred HHHHHHHHhcCCcEEEEEEEcCCCCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEe--
Q 006567 153 TAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLH-- 230 (640)
Q Consensus 153 ~al~~ll~~~~w~~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~-- 230 (640)
+.+.++++.++.+++.++++.........+.+.+.+++.|+.+..-..+.++ .+........+.+++.++|.||-.
T Consensus 20 ~~l~~~l~~~g~~~~livtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~--p~~~~v~~~~~~~~~~~~d~IIavGG 97 (386)
T 1rrm_A 20 GALTDEVKRRGYQKALIVTDKTLVQCGVVAKVTDKMDAAGLAWAIYDGVVPN--PTITVVKEGLGVFQNSGADYLIAIGG 97 (386)
T ss_dssp GGHHHHHHHHTCCEEEEECBHHHHHTTHHHHHHHHHHHTTCEEEEECBCCSS--CBHHHHHHHHHHHHHHTCSEEEEEES
T ss_pred HHHHHHHHHcCCCEEEEEECcchhhchHHHHHHHHHHHcCCeEEEECCccCC--CCHHHHHHHHHHHHhcCcCEEEEeCC
Confidence 3456677777888998887543332236788889998888876533334444 567788899999999999998865
Q ss_pred cChhhHHHHHHHHH
Q 006567 231 VSPSLGFQVFSVAK 244 (640)
Q Consensus 231 ~~~~~~~~il~~a~ 244 (640)
++.-|+..++....
T Consensus 98 Gsv~D~aK~iA~~~ 111 (386)
T 1rrm_A 98 GSPQDTCKAIGIIS 111 (386)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 45566776666554
No 169
>2zsk_A PH1733, 226AA long hypothetical aspartate racemase; alpha/beta fold, unknown function; 2.55A {Pyrococcus horikoshii}
Probab=73.10 E-value=16 Score=33.27 Aligned_cols=77 Identities=18% Similarity=0.158 Sum_probs=43.1
Q ss_pred HhHhcCcEEEEcCCChHHHHHHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHHhcCCcEEEEE
Q 006567 91 RFMETDIVAIIGPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVI 170 (640)
Q Consensus 91 ~l~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii 170 (640)
.+.+.|+.+|+-+-++.... +..+-+..++|++.. .++.++.+...+-++|+++
T Consensus 68 ~L~~~g~d~iviaCnTa~~~-~~~l~~~~~iPvi~i-------------------------~~a~~~~~~~~~~~rigvl 121 (226)
T 2zsk_A 68 ALERAGAELIAFAANTPHLV-FDDVQREVNVPMVSI-------------------------IDAVAEEILKRGVRKVLLL 121 (226)
T ss_dssp HHHHHTCSEEEESSSGGGGG-HHHHHHHCSSCBCCH-------------------------HHHHHHHHHHTTCCEEEEE
T ss_pred HHHHcCCCEEEECCCcHHHH-HHHHHHhCCCCEecc-------------------------HHHHHHHHHHcCCCeEEEE
Confidence 34445899888765554332 344445567887752 1333443344457788888
Q ss_pred EEcCCCCcccHHHHHHHHhhcCeEEE
Q 006567 171 FVDNEYGRNGVSALNDKLAERRCRIS 196 (640)
Q Consensus 171 ~~~~~~g~~~~~~~~~~~~~~g~~v~ 196 (640)
.+... .. ...+++.+++.|+++.
T Consensus 122 aT~~T--~~-~~~y~~~l~~~g~~v~ 144 (226)
T 2zsk_A 122 GTKTT--MT-ADFYIKTLEEKGLEVV 144 (226)
T ss_dssp SSTTT--TS-CHHHHHHHHTTTCEEE
T ss_pred eCHHH--Hh-hhHHHHHHHHCCCEEE
Confidence 64322 11 1245666777777653
No 170
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=72.76 E-value=5.4 Score=38.30 Aligned_cols=65 Identities=14% Similarity=0.113 Sum_probs=45.1
Q ss_pred HHHHhC-CCCccEEEEEcCCCCCCCCHhhHHHHHHcCcccEEEeeeeeeccccc------eEEeCccccccceEEEEecC
Q 006567 500 AAVNLL-PYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDITIVTNRTK------IVDFSQPYAASGLVVVVPFR 572 (640)
Q Consensus 500 ~i~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~~~~~~~~t~~R~~------~vdfs~p~~~~~~~il~~~~ 572 (640)
.+.+++ |.+ +++... +++..++..|.+|++|+++++.... .|.+ .+.++.++...+..+++++.
T Consensus 24 ~~~~~~~g~~--v~~~~~------~~~~~~~~~l~~G~~D~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~lv~~~~ 94 (308)
T 2x26_A 24 LLEKRYPESK--ISWVEF------PAGPQMLEALNVGSIDLGSTGDIPP-IFAQAAGADLVYVGVEPPKPKAEVILVAEN 94 (308)
T ss_dssp HHHHHCTTSE--EEEEEC------SSHHHHHHHHHHTSCSEEEECSHHH-HHHHHTTCCEEEEEEECCCGGGEEEEEETT
T ss_pred hHhHhcCCCc--eEEEEC------CCcHHHHHHHHCCCCCEEcccCcHH-HHHHhcCCCeEEEEEecCCCCceEEEEeCC
Confidence 356666 777 555543 3458999999999999997655432 2221 45677888778889999876
Q ss_pred C
Q 006567 573 K 573 (640)
Q Consensus 573 ~ 573 (640)
.
T Consensus 95 ~ 95 (308)
T 2x26_A 95 S 95 (308)
T ss_dssp C
T ss_pred C
Confidence 4
No 171
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=72.51 E-value=11 Score=38.04 Aligned_cols=89 Identities=11% Similarity=0.066 Sum_probs=60.8
Q ss_pred HHHHHHHHhcCCcEEEEEEEcCCCCc-ccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEec
Q 006567 153 TAVAEMVSYYGWNAVSVIFVDNEYGR-NGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHV 231 (640)
Q Consensus 153 ~al~~ll~~~~w~~v~ii~~~~~~g~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~ 231 (640)
..+.++++.++.+++.+|+++..... ...+.+.+.+++.|+.+..-..+.++ .+.......++.+++.++|.||-.+
T Consensus 32 ~~l~~~l~~~g~~r~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~f~~v~~~--p~~~~v~~~~~~~~~~~~D~IIavG 109 (407)
T 1vlj_A 32 PKIGEEIKNAGIRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPN--PVLSKVHEAVEVAKKEKVEAVLGVG 109 (407)
T ss_dssp GGHHHHHHHTTCCEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEECCCCSS--CBHHHHHHHHHHHHHTTCSEEEEEE
T ss_pred HHHHHHHHHcCCCeEEEEECchHHhhccHHHHHHHHHHHcCCeEEEecCccCC--CCHHHHHHHHHHHHhcCCCEEEEeC
Confidence 34566777788899998885332222 25788888898888876532223333 5577888899999999999998664
Q ss_pred --ChhhHHHHHHHH
Q 006567 232 --SPSLGFQVFSVA 243 (640)
Q Consensus 232 --~~~~~~~il~~a 243 (640)
+.-|+..++...
T Consensus 110 GGsviD~AK~iA~~ 123 (407)
T 1vlj_A 110 GGSVVDSAKAVAAG 123 (407)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHH
Confidence 455666665543
No 172
>3jv9_A OXYR, transcriptional regulator, LYSR family; LYSR-type transcriptional regulator, LTTR, redox, structural genomics, OPPF; 2.39A {Neisseria meningitidis}
Probab=71.67 E-value=12 Score=33.00 Aligned_cols=83 Identities=16% Similarity=0.205 Sum_probs=56.1
Q ss_pred CeEEEEeecCCCccceEEeecCCcceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHhhHHHHHHcCcccEEEeee
Q 006567 465 KLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDI 544 (640)
Q Consensus 465 ~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~~~~~~ 544 (640)
++|+|++... -...+-.+++..+.++.. ++++++.. .....++..|.+|++|+++...
T Consensus 4 g~l~Ig~~~~--------------~~~~~l~~~l~~~~~~~P-~i~i~i~~-------~~~~~~~~~l~~g~~Dl~i~~~ 61 (219)
T 3jv9_A 4 GAFKLGLIFT--------------VAPYLLPKLIVSLRRTAP-KMPLMLEE-------NYTHTLTESLKRGDVDAIIVAE 61 (219)
T ss_dssp CCEEEEEETT--------------THHHHHHHHHHHHHHHST-TCCEEEEE-------ECHHHHHHHHHHTSSSEEEEES
T ss_pred CcEEEEEcch--------------hhHHHHHHHHHHHHHHCC-CcEEEEEe-------CCcHHHHHHHHcCCCCEEEEcC
Confidence 5688888621 122455677888887764 33366655 5588999999999999998754
Q ss_pred eeeccccceEEeCccccccceEEEEecCC
Q 006567 545 TIVTNRTKIVDFSQPYAASGLVVVVPFRK 573 (640)
Q Consensus 545 ~~t~~R~~~vdfs~p~~~~~~~il~~~~~ 573 (640)
.... ..+. +.++....+.+++++..
T Consensus 62 ~~~~---~~~~-~~~l~~~~~~~v~~~~~ 86 (219)
T 3jv9_A 62 PFQE---PGIV-TEPLYDEPFFVIVPKGH 86 (219)
T ss_dssp SCCC---TTEE-EEEEEEEEEEEEEETTC
T ss_pred CCCC---CCee-EEEeeeceEEEEEeCCC
Confidence 3322 2222 46778888888887664
No 173
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=70.99 E-value=15 Score=36.36 Aligned_cols=88 Identities=13% Similarity=0.063 Sum_probs=61.2
Q ss_pred HHHHHHHHhcCCcEEEEEEEcCCCCc-ccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEec
Q 006567 153 TAVAEMVSYYGWNAVSVIFVDNEYGR-NGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHV 231 (640)
Q Consensus 153 ~al~~ll~~~~w~~v~ii~~~~~~g~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~ 231 (640)
+.+.++++.++ +++.+|++...... ...+.+.+.+++.|+++..-..+.++ .+........+.+++.++|.||-.+
T Consensus 30 ~~l~~~l~~~g-~~~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~--p~~~~v~~~~~~~~~~~~d~IIavG 106 (371)
T 1o2d_A 30 EKRGNIIDLLG-KRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEEN--PSFDNVMKAVERYRNDSFDFVVGLG 106 (371)
T ss_dssp HHHGGGGGGTC-SEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEECSS--CBHHHHHHHHHHHTTSCCSEEEEEE
T ss_pred HHHHHHHHHcC-CEEEEEECchHHhhccHHHHHHHHHHHcCCeEEEeCCccCC--CCHHHHHHHHHHHHhcCCCEEEEeC
Confidence 44566677778 89998886544332 25788889998888876433334444 5577889999999999999998664
Q ss_pred --ChhhHHHHHHHH
Q 006567 232 --SPSLGFQVFSVA 243 (640)
Q Consensus 232 --~~~~~~~il~~a 243 (640)
+.-|+..++...
T Consensus 107 GGsv~D~AK~iA~~ 120 (371)
T 1o2d_A 107 GGSPMDFAKAVAVL 120 (371)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHH
Confidence 455666665544
No 174
>1i6a_A OXYR, hydrogen peroxide-inducible genes activator; OXYR regulatory domain, oxidized form, transcription; 2.30A {Escherichia coli} SCOP: c.94.1.1 PDB: 1i69_A
Probab=70.83 E-value=14 Score=32.80 Aligned_cols=83 Identities=13% Similarity=0.153 Sum_probs=54.5
Q ss_pred CeEEEEeecCCCccceEEeecCCcceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHhhHHHHHHcCcccEEEeee
Q 006567 465 KLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDI 544 (640)
Q Consensus 465 ~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~~~~~~ 544 (640)
++|+|++... -...+-.+++..+.++.. ++++++.. +....++..|.+|++|+++...
T Consensus 5 g~lrIg~~~~--------------~~~~~l~~~l~~f~~~~P-~v~l~l~~-------~~~~~~~~~l~~g~~Dl~i~~~ 62 (219)
T 1i6a_A 5 GPLHIGLIPT--------------VGPYLLPHIIPMLHQTFP-KLEMYLHE-------AQTHQLLAQLDSGKLDAVILAL 62 (219)
T ss_dssp EEEEEEECTT--------------THHHHHHHHHHHHHHHCT-TEEEEEEE-------CCHHHHHHHHHHTSCSEEEEEC
T ss_pred eEEEEEeccc--------------hhhhhhhHHHHHHHHHCC-CeEEEEEE-------CChHHHHHHHHcCCeeEEEecC
Confidence 5788888521 123466778888888875 44566665 6689999999999999998643
Q ss_pred eeeccccceEEeCccccccceEEEEecCC
Q 006567 545 TIVTNRTKIVDFSQPYAASGLVVVVPFRK 573 (640)
Q Consensus 545 ~~t~~R~~~vdfs~p~~~~~~~il~~~~~ 573 (640)
.... ..+. +.++....+.+++++..
T Consensus 63 ~~~~---~~l~-~~~l~~~~~~~v~~~~h 87 (219)
T 1i6a_A 63 VKES---EAFI-EVPLFDEPMLLAIYEDH 87 (219)
T ss_dssp CGGG---TTSE-EEEEEEEEEEEEEETTS
T ss_pred CCCC---CCcc-eeeeecccEEEEEcCCC
Confidence 2211 1122 24666667777766543
No 175
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=70.72 E-value=2.8 Score=41.20 Aligned_cols=63 Identities=19% Similarity=0.274 Sum_probs=41.1
Q ss_pred HhCCCCccEEEEEcCCCCCCCCHhhHHHHHHcCcccEEEeeeeeecc-ccceEEeCc--cccccceEEEEecCC
Q 006567 503 NLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDITIVTN-RTKIVDFSQ--PYAASGLVVVVPFRK 573 (640)
Q Consensus 503 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~~~~~~~~t~~-R~~~vdfs~--p~~~~~~~il~~~~~ 573 (640)
++.|++ +++... ++|..++..|.+|++|+++.+.+.... |.+-.++.. .....+..+++++..
T Consensus 78 ~~~G~~--Ve~~~~------~~~~~~~~al~~G~~D~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~ivv~~~s 143 (341)
T 3un6_A 78 NHPKYK--LELVKF------NNWPDLMDALNSGRIDGASTLIELAMKSKQKGSNIKAVALGHHEGNVIMGQKGM 143 (341)
T ss_dssp SSCSSE--EEEEEC------SSHHHHHHHHHTTSSSEEEEEHHHHHHHHHTTCCCEEEEESCEECEEEEESTTC
T ss_pred HHcCCc--EEEEEc------CCHHHHHHHHHcCCCCEEecchHHHHHHHHCCCCeEEEeecCCCceEEEEcCCC
Confidence 566777 555553 569999999999999999887755432 333222211 112467788888754
No 176
>3oxn_A Putative transcriptional regulator, LYSR family; structural genomics, PSI-2, protein structure initiative; 2.70A {Vibrio parahaemolyticus}
Probab=70.20 E-value=16 Score=33.12 Aligned_cols=84 Identities=14% Similarity=0.153 Sum_probs=58.3
Q ss_pred CCeEEEEeecCCCccceEEeecCCcceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHhhHHHHHHcCcccEEEee
Q 006567 464 GKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGD 543 (640)
Q Consensus 464 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~~~~~ 543 (640)
.++|+|++.. .-...+...++..+.++.. ++++.+.. .+...++..|.+|++|++++.
T Consensus 18 ~g~l~Ig~~~--------------~~~~~~l~~~l~~f~~~~P-~i~l~~~~-------~~~~~~~~~l~~g~~Dl~i~~ 75 (241)
T 3oxn_A 18 DQTFTIATTD--------------YAMQTILPFALPRIYQEAP-NVSFNFLP-------LQHDRLSDQLTYEGADLAICR 75 (241)
T ss_dssp CCEEEEEECS--------------HHHHHTHHHHHHHHHHHCT-TCEEEEEE-------CCGGGHHHHHHTSCCSEEEEC
T ss_pred CceEEEEech--------------HHHHHHHHHHHHHHHHHCC-CCEEEEEE-------CCcccHHHHHHcCCCCEEEec
Confidence 4679998852 1122456678888888865 33366665 568899999999999999874
Q ss_pred eeeeccccceEEeCccccccceEEEEecCC
Q 006567 544 ITIVTNRTKIVDFSQPYAASGLVVVVPFRK 573 (640)
Q Consensus 544 ~~~t~~R~~~vdfs~p~~~~~~~il~~~~~ 573 (640)
... ....+. +.++....+.+++++..
T Consensus 76 ~~~---~~~~~~-~~~l~~~~~~~v~~~~h 101 (241)
T 3oxn_A 76 PTG---PVEPLR-SEILGRVGVLCLLSKQH 101 (241)
T ss_dssp CSS---CCTTEE-EEEEECCCEEEEEETTS
T ss_pred CCC---CCccce-eEEeecccEEEEEeCCC
Confidence 322 223332 46788888999987765
No 177
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=70.18 E-value=13 Score=35.57 Aligned_cols=80 Identities=14% Similarity=0.028 Sum_probs=58.0
Q ss_pred cEEEEEEE--cCCCCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecCh-hhHHHHHH
Q 006567 165 NAVSVIFV--DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP-SLGFQVFS 241 (640)
Q Consensus 165 ~~v~ii~~--~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~-~~~~~il~ 241 (640)
++|+++.. +++|.......+++.+++.|+.+..... . .+.......++.+...++|.||+.... ......++
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~----~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~ 77 (313)
T 3m9w_A 3 VKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSA-N----GNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVVK 77 (313)
T ss_dssp CEEEEEESCCSSSTTHHHHHHHHHHHHHTSCEEEEEEC-T----TCHHHHHHHHHHHHHTTCSEEEEECSSTTSCHHHHH
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECC-C----CCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHH
Confidence 46888875 3678888889999999999988775432 1 234555677888888899999987543 34456788
Q ss_pred HHHHcCCc
Q 006567 242 VAKYLGMM 249 (640)
Q Consensus 242 ~a~~~gl~ 249 (640)
.+.+.|++
T Consensus 78 ~~~~~~iP 85 (313)
T 3m9w_A 78 EAKQEGIK 85 (313)
T ss_dssp HHHTTTCE
T ss_pred HHHHCCCe
Confidence 88776653
No 178
>3lr1_A Tungstate ABC transporter, periplasmic tungstate- binding protein; the tungstate ABC transporter, structural genomics, PSI, MCSG; 1.80A {Geobacter sulfurreducens}
Probab=69.42 E-value=3.6 Score=37.94 Aligned_cols=75 Identities=12% Similarity=-0.023 Sum_probs=54.3
Q ss_pred eeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHhhHHHHHHcCcccEEEeeeeeecccc---ceEEeCccccccceE
Q 006567 490 FQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDITIVTNRT---KIVDFSQPYAASGLV 566 (640)
Q Consensus 490 ~~G~~~dl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~~~~~~~~t~~R~---~~vdfs~p~~~~~~~ 566 (640)
..|+.-+|+..+.++.|.++++.+ +....++.++.+|.+|+++..-....+.. ....=..+|+...++
T Consensus 17 ~~~ll~~L~~~Fek~~gv~V~~~~---------~gSg~ll~qi~~G~aDV~isa~~~~~~~l~~~g~~~~~~~~~~n~lV 87 (236)
T 3lr1_A 17 DSGLLKVLLPPFEKKNNVKVDVIA---------VGTGQALKLGEAGDVDVVFVHARKLEDKFVADGFGVNRKDVMYNDFV 87 (236)
T ss_dssp HHCHHHHHHHHHHHHHTCEEEEEE---------ECHHHHHHHHHTTSCSEEEECCHHHHHHHHHTTSEEEEEEEEECCEE
T ss_pred chHHHHHHHHHHHHHhCCeEEEEE---------cChHHHHHHHhcCCCCEEeecCchhHHHHHhcCCCcceEEEEcCcEE
Confidence 347777889999988888855544 45788999999999999977654433321 112224689999999
Q ss_pred EEEecCC
Q 006567 567 VVVPFRK 573 (640)
Q Consensus 567 il~~~~~ 573 (640)
+++|+.+
T Consensus 88 lV~P~~~ 94 (236)
T 3lr1_A 88 IVGPKND 94 (236)
T ss_dssp EEECTTC
T ss_pred EEEECCC
Confidence 9998776
No 179
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=69.22 E-value=9.5 Score=36.35 Aligned_cols=81 Identities=11% Similarity=0.142 Sum_probs=56.5
Q ss_pred cEEEEEEE--cCCCCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEec-ChhhHHHHHH
Q 006567 165 NAVSVIFV--DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHV-SPSLGFQVFS 241 (640)
Q Consensus 165 ~~v~ii~~--~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~-~~~~~~~il~ 241 (640)
++++++.. +++|.....+.+++.+++.|..+.....-. .+.......++.+...++|.||+.. +.......++
T Consensus 5 ~~I~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~----~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~ 80 (305)
T 3g1w_A 5 ETYMMITFQSGMDYWKRCLKGFEDAAQALNVTVEYRGAAQ----YDIQEQITVLEQAIAKNPAGIAISAIDPVELTDTIN 80 (305)
T ss_dssp CEEEEEESSTTSTHHHHHHHHHHHHHHHHTCEEEEEECSS----SCHHHHHHHHHHHHHHCCSEEEECCSSTTTTHHHHH
T ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHHcCCEEEEeCCCc----CCHHHHHHHHHHHHHhCCCEEEEcCCCHHHHHHHHH
Confidence 57888775 356777778889999999998887532111 2355566777888888999998874 3344556788
Q ss_pred HHHHcCCc
Q 006567 242 VAKYLGMM 249 (640)
Q Consensus 242 ~a~~~gl~ 249 (640)
++.+.|++
T Consensus 81 ~~~~~~iP 88 (305)
T 3g1w_A 81 KAVDAGIP 88 (305)
T ss_dssp HHHHTTCC
T ss_pred HHHHCCCc
Confidence 88887653
No 180
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=68.40 E-value=14 Score=35.07 Aligned_cols=86 Identities=8% Similarity=-0.001 Sum_probs=57.4
Q ss_pred cCCcEEEEEEEc---CCCCcccHHHHHHHHhhc-CeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecChh-hH
Q 006567 162 YGWNAVSVIFVD---NEYGRNGVSALNDKLAER-RCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPS-LG 236 (640)
Q Consensus 162 ~~w~~v~ii~~~---~~~g~~~~~~~~~~~~~~-g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~-~~ 236 (640)
-+-.+|+++..+ +.|.......+++.+++. |..+......... .+.......++.+...++|.||+..... ..
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~~g~~~~~~~~~~~~--~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~ 83 (304)
T 3gbv_A 6 NKKYTFACLLPKHLEGEYWTDVQKGIREAVTTYSDFNISANITHYDP--YDYNSFVATSQAVIEEQPDGVMFAPTVPQYT 83 (304)
T ss_dssp -CCEEEEEEEECCCTTSHHHHHHHHHHHHHHHTGGGCEEEEEEEECS--SCHHHHHHHHHHHHTTCCSEEEECCSSGGGT
T ss_pred CCcceEEEEecCCCCchHHHHHHHHHHHHHHHHHhCCeEEEEEcCCC--CCHHHHHHHHHHHHhcCCCEEEECCCChHHH
Confidence 344678887754 456667788888989888 7766554332211 2355566778888889999999875443 45
Q ss_pred HHHHHHHHHcCCc
Q 006567 237 FQVFSVAKYLGMM 249 (640)
Q Consensus 237 ~~il~~a~~~gl~ 249 (640)
...++.+.+.|++
T Consensus 84 ~~~~~~~~~~~iP 96 (304)
T 3gbv_A 84 KGFTDALNELGIP 96 (304)
T ss_dssp HHHHHHHHHHTCC
T ss_pred HHHHHHHHHCCCe
Confidence 6677777776653
No 181
>2ql3_A Probable transcriptional regulator, LYSR family P; APC7314, rhodococcus RHA1, structural genomics, PSI-2; HET: MSE; 2.05A {Rhodococcus SP}
Probab=67.74 E-value=19 Score=31.46 Aligned_cols=83 Identities=12% Similarity=0.083 Sum_probs=55.8
Q ss_pred CeEEEEeecCCCccceEEeecCCcceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHhhHHHHHHcCcccEEEeee
Q 006567 465 KLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDI 544 (640)
Q Consensus 465 ~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~~~~~~ 544 (640)
++|+|++... -...+-.+++..+.++.. .+++++.. .+...+..+|.+|++|+++...
T Consensus 5 g~l~Ig~~~~--------------~~~~~l~~~l~~f~~~~P-~i~i~l~~-------~~~~~l~~~l~~g~~Dl~i~~~ 62 (209)
T 2ql3_A 5 GPIAVGCYPA--------------LGPTILPSMLYAFTAEYP-RASVEFRE-------DTQNRLRTQLEGGELDVAIVYD 62 (209)
T ss_dssp EEEEEEECGG--------------GTTTTHHHHHHHHHHHCT-TEEEEEEE-------CCHHHHHHHHHTTSCSEEEEES
T ss_pred eeEEEeechh--------------hhhhhHHHHHHHHHHHCC-CceEEEEE-------CcHHHHHHHHHcCCccEEEEec
Confidence 5788888521 112456678888888875 44466665 5688999999999999998643
Q ss_pred eeeccccceEEeCccccccceEEEEecCC
Q 006567 545 TIVTNRTKIVDFSQPYAASGLVVVVPFRK 573 (640)
Q Consensus 545 ~~t~~R~~~vdfs~p~~~~~~~il~~~~~ 573 (640)
.. ....+. +.++....+.+++++..
T Consensus 63 ~~---~~~~l~-~~~l~~~~~~~v~~~~h 87 (209)
T 2ql3_A 63 LD---LSPEWQ-TVPLMTREPMVVLGAEH 87 (209)
T ss_dssp SS---CCTTEE-EEEEEEECCEEEEETTC
T ss_pred CC---CCCCce-EEEeecCceEEEEeCCC
Confidence 21 112232 35777888888887654
No 182
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=67.04 E-value=6.8 Score=39.17 Aligned_cols=83 Identities=10% Similarity=0.042 Sum_probs=52.1
Q ss_pred HHHHHHHHhcCCcEEEEEEEcCCCCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecC
Q 006567 153 TAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVS 232 (640)
Q Consensus 153 ~al~~ll~~~~w~~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~ 232 (640)
+.+.++++.++ +++.+|++...+. ...+.+.+.+++ |+.+.+. .+... .+.+......+.+++.++|.||-.+.
T Consensus 42 ~~l~~~l~~~g-~r~liVtd~~~~~-~~~~~v~~~L~~-g~~~~~~-~~~~~--p~~~~v~~~~~~~~~~~~d~IIavGG 115 (387)
T 3uhj_A 42 DKLAAYLAPLG-KRALVLIDRVLFD-ALSERIGKSCGD-SLDIRFE-RFGGE--CCTSEIERVRKVAIEHGSDILVGVGG 115 (387)
T ss_dssp TTTHHHHGGGC-SEEEEEECTTTHH-HHHHHC-------CCEEEEE-ECCSS--CSHHHHHHHHHHHHHHTCSEEEEESS
T ss_pred HHHHHHHHHcC-CEEEEEECchHHH-HHHHHHHHHHHc-CCCeEEE-EcCCC--CCHHHHHHHHHHHhhcCCCEEEEeCC
Confidence 34566788888 9998888555433 256777788888 8877433 34444 55778888888888889999888754
Q ss_pred h--hhHHHHHH
Q 006567 233 P--SLGFQVFS 241 (640)
Q Consensus 233 ~--~~~~~il~ 241 (640)
+ -|+..++.
T Consensus 116 Gs~~D~AK~iA 126 (387)
T 3uhj_A 116 GKTADTAKIVA 126 (387)
T ss_dssp HHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 3 34444443
No 183
>3muq_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.05A {Vibrio parahaemolyticus}
Probab=66.56 E-value=4.4 Score=37.36 Aligned_cols=74 Identities=12% Similarity=0.033 Sum_probs=53.0
Q ss_pred eeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHhhHHHHHHcCcccEEEeeeeeecccc---ceEEeCccccccceEE
Q 006567 491 QGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDITIVTNRT---KIVDFSQPYAASGLVV 567 (640)
Q Consensus 491 ~G~~~dl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~~~~~~~~t~~R~---~~vdfs~p~~~~~~~i 567 (640)
.|+.-+|+..+.++.|.++++.+ +....++.++.+|.+|+++..-....+.. ....=..+|+...+++
T Consensus 18 ~~ll~~L~~~Fek~~gv~V~~~~---------~gSg~ll~qi~~G~aDv~isa~~~~~~~l~~~g~~~~~~~~a~N~lVl 88 (237)
T 3muq_A 18 SGLLDYLLPQFEKDTGYKVDVIA---------AGTGKALKMGENGDVDLVMTHAPKAEGTFVEKGYGVLPRKLMYNDFVI 88 (237)
T ss_dssp HTHHHHHHHHHHHHHCCEEEEEE---------ECHHHHHHHHHTTSSSEEEECCHHHHHHHHHTTSEEEEEEEEEEEEEE
T ss_pred hhHHHHHHHHHHHHhCceEEEEE---------cChHHHHHHHhcCCCCEEEecCchhHHHHHhcCCccccEEEEeCCEEE
Confidence 46777888999988888755544 44778899999999999976554433321 1112247888889999
Q ss_pred EEecCC
Q 006567 568 VVPFRK 573 (640)
Q Consensus 568 l~~~~~ 573 (640)
++|+.+
T Consensus 89 V~P~~~ 94 (237)
T 3muq_A 89 VGPKAD 94 (237)
T ss_dssp EECTTC
T ss_pred EEeCCC
Confidence 998766
No 184
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=66.29 E-value=18 Score=35.03 Aligned_cols=88 Identities=7% Similarity=-0.043 Sum_probs=55.3
Q ss_pred HHHHHhcCCcEEEEEEEc----CCCCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEec
Q 006567 156 AEMVSYYGWNAVSVIFVD----NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHV 231 (640)
Q Consensus 156 ~~ll~~~~w~~v~ii~~~----~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~ 231 (640)
+.-++...-+.|+++..+ +.|.......+++.+++.|..+..... . .+...-...++.+...+.|.||+..
T Consensus 53 a~~l~~~~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~----~~~~~~~~~~~~l~~~~vdgiIi~~ 127 (338)
T 3dbi_A 53 ARNLSAKSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADG-K----HSAEEERQAIQYLLDLRCDAIMIYP 127 (338)
T ss_dssp -------CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHTTCEEEEEEC-T----TSHHHHHHHHHHHHHTTCSEEEECC
T ss_pred HHHhhhCCCCEEEEEecCCcccChhHHHHHHHHHHHHHHCCCEEEEEeC-C----CChHHHHHHHHHHHhCCCCEEEEeC
Confidence 333444455789998865 345566778888899999988775432 1 2244455677888888999999876
Q ss_pred ChhhHHHHHHHHHHcCC
Q 006567 232 SPSLGFQVFSVAKYLGM 248 (640)
Q Consensus 232 ~~~~~~~il~~a~~~gl 248 (640)
.......+.+.+.+.+.
T Consensus 128 ~~~~~~~~~~~~~~~~i 144 (338)
T 3dbi_A 128 RFLSVDEIDDIIDAHSQ 144 (338)
T ss_dssp SSSCHHHHHHHHHHCSS
T ss_pred CCCChHHHHHHHHcCCC
Confidence 44344456666666554
No 185
>3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio regulation; 1.58A {Porphyromonas gingivalis}
Probab=65.81 E-value=16 Score=32.62 Aligned_cols=83 Identities=13% Similarity=0.052 Sum_probs=57.8
Q ss_pred CeEEEEeecCCCccceEEeecCCcceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHhhHHHHHHcCcccEEEeee
Q 006567 465 KLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDI 544 (640)
Q Consensus 465 ~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~~~~~~ 544 (640)
++|+|++... -...+..+++..+.++.. ++++++.. +....++..|.+|++|+++...
T Consensus 11 g~l~Ig~~~~--------------~~~~~l~~~l~~~~~~~P-~v~i~~~~-------~~~~~~~~~l~~g~~Dl~i~~~ 68 (232)
T 3ho7_A 11 GRLNIAVLPT--------------IAPYLLPRVFPIWKKELA-GLEIHVSE-------MQTSRCLASLLSGEIDMAIIAS 68 (232)
T ss_dssp EEEEEEECTT--------------THHHHHHHHHHHHHHHST-TEEEEEEE-------CCHHHHHHHHHHTSCSEEEESS
T ss_pred eeEEEEeccc--------------cchhhhHHHHHHHHHHCC-CcEEEEEe-------CCHHHHHHHHHcCCCCEEEEcC
Confidence 5788888521 122456678888888775 44466665 6689999999999999998754
Q ss_pred eeeccccceEEeCccccccceEEEEecCC
Q 006567 545 TIVTNRTKIVDFSQPYAASGLVVVVPFRK 573 (640)
Q Consensus 545 ~~t~~R~~~vdfs~p~~~~~~~il~~~~~ 573 (640)
.... ..+. +.++....+.+++++..
T Consensus 69 ~~~~---~~l~-~~~l~~~~~~~v~~~~h 93 (232)
T 3ho7_A 69 KAET---EGLE-DDLLYYEEFLGYVSRCE 93 (232)
T ss_dssp CCCC---TTEE-EEEEEEEEEEEEECTTS
T ss_pred CCCC---CCeE-EEEecccCEEEEEcCCC
Confidence 4332 2222 46788888888887664
No 186
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=65.49 E-value=17 Score=34.47 Aligned_cols=78 Identities=9% Similarity=0.093 Sum_probs=55.7
Q ss_pred EEEEEEEc--CCCCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEec-ChhhHHHHHHH
Q 006567 166 AVSVIFVD--NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHV-SPSLGFQVFSV 242 (640)
Q Consensus 166 ~v~ii~~~--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~-~~~~~~~il~~ 242 (640)
+|+++..+ ++|.....+.+++.+++.|..+..... . +.......++.+...++|.||+.. +.......++.
T Consensus 4 ~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~---~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~ 77 (306)
T 8abp_A 4 KLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAV---P---DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAK 77 (306)
T ss_dssp EEEEEESCTTSHHHHHHHHHHHHHHHHHTEEEEEEEC---C---SHHHHHHHHHHHHHTTCCEEEEECSCGGGHHHHHHH
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHHcCCEEEEeCC---C---CHHHHHHHHHHHHHcCCCEEEEeCCCchhhHHHHHH
Confidence 67777753 456677788899999999988765432 1 245556778888888999988874 44455667888
Q ss_pred HHHcCCc
Q 006567 243 AKYLGMM 249 (640)
Q Consensus 243 a~~~gl~ 249 (640)
+.+.|++
T Consensus 78 ~~~~~iP 84 (306)
T 8abp_A 78 ARGYDMK 84 (306)
T ss_dssp HHHTTCE
T ss_pred HHHCCCc
Confidence 8887653
No 187
>4ab5_A Transcriptional regulator, LYSR family; transcription factors; 2.51A {Neisseria meningitidis serogroup B} PDB: 4ab6_A
Probab=64.41 E-value=12 Score=33.26 Aligned_cols=84 Identities=14% Similarity=0.078 Sum_probs=56.2
Q ss_pred CCeEEEEeecCCCccceEEeecCCcceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHhhHHHHHHcCcccEEEee
Q 006567 464 GKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGD 543 (640)
Q Consensus 464 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~~~~~ 543 (640)
.++|+|++... -...+..+++..+.++.. ++++++.. +....++..|.+|++|+++..
T Consensus 7 ~g~l~Ig~~~~--------------~~~~~l~~~l~~f~~~~P-~i~i~i~~-------~~~~~~~~~l~~g~~Di~i~~ 64 (222)
T 4ab5_A 7 AGELRIAVECH--------------TCFDWLMPAMGEFRPMWP-QVELDIVS-------GFQADPVGLLLQHRADLAIVS 64 (222)
T ss_dssp TEEEEEECCCT--------------TTHHHHHHHHHHHHHHST-TEEEEEEC-------CCCSCTHHHHHTTSCSEEEES
T ss_pred cceEEEEEehH--------------HHHHHHHHHHHHHHHHCC-CcEEEEec-------CCHHHHHHHHHcCCcCEEEec
Confidence 35788888521 122455678888888875 33366654 557889999999999999875
Q ss_pred eeeeccccceEEeCccccccceEEEEecCC
Q 006567 544 ITIVTNRTKIVDFSQPYAASGLVVVVPFRK 573 (640)
Q Consensus 544 ~~~t~~R~~~vdfs~p~~~~~~~il~~~~~ 573 (640)
..... ..+. ..++....+.+++++..
T Consensus 65 ~~~~~---~~~~-~~~l~~~~~~~v~~~~~ 90 (222)
T 4ab5_A 65 EAEKQ---NGIS-FQPLFAYEMVGICAPDH 90 (222)
T ss_dssp CCCCC---TTEE-EEEEEEEEEEEEECTTS
T ss_pred CCCCc---CCeE-EEEeecCcEEEEecCCC
Confidence 33222 2222 46778888888887665
No 188
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=63.28 E-value=29 Score=29.93 Aligned_cols=63 Identities=13% Similarity=0.137 Sum_probs=46.5
Q ss_pred cEEEEEEEcCCCCc---ccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcC-CceEEEEec
Q 006567 165 NAVSVIFVDNEYGR---NGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALM-ESRVIVLHV 231 (640)
Q Consensus 165 ~~v~ii~~~~~~g~---~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~vivl~~ 231 (640)
-+++||...|+.|+ .....+.+.+++.|..+.....++.+ ...+...+++..+. ++|+||..+
T Consensus 11 ~~v~Ii~tGdE~g~i~D~n~~~l~~~L~~~G~~v~~~~iv~Dd----~~~i~~~l~~a~~~~~~DlVittG 77 (172)
T 1mkz_A 11 TRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVKEN----RYAIRAQVSAWIASDDVQVVLITG 77 (172)
T ss_dssp CEEEEEEECSSCCGGGCHHHHHHHHHHHHTTCEEEEEEEECSC----HHHHHHHHHHHHHSSSCCEEEEES
T ss_pred CEEEEEEEeCCCCcccCccHHHHHHHHHHCCCeEeEEEEeCCC----HHHHHHHHHHHHhcCCCCEEEeCC
Confidence 47888887776553 23457788888899988877666644 77788888887765 689888874
No 189
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis}
Probab=60.45 E-value=35 Score=31.90 Aligned_cols=39 Identities=10% Similarity=0.273 Sum_probs=25.3
Q ss_pred HHHHhHhcCcEEEEcCCChHHHHHHHHhhccCCceEEec
Q 006567 88 EALRFMETDIVAIIGPQCSTVAHIVSYVSNELQVPLLSF 126 (640)
Q Consensus 88 ~a~~l~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~ 126 (640)
.+..+.+.|+.+|+-+=++.++..+..+-+..++|+|..
T Consensus 57 ~~~~L~~~g~d~iviaCNTas~~~l~~lr~~~~iPvigi 95 (267)
T 2gzm_A 57 MTEHLLDLNIKMLVIACNTATAVVLEEMQKQLPIPVVGV 95 (267)
T ss_dssp HHHHHHTTTCSEEEECCHHHHHHHHHHHHHHCSSCEEES
T ss_pred HHHHHHHCCCCEEEEeCchhhHHHHHHHHHhCCCCEEee
Confidence 344455569998887444444345666667779999973
No 190
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=60.12 E-value=9.5 Score=29.75 Aligned_cols=37 Identities=11% Similarity=0.030 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhhhcccCCCCCCCccccchhhhHhHhhhhh
Q 006567 595 CFFVVVGIVVWILEHRINDEFRGPPKRQVITILWFSLSTLF 635 (640)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 635 (640)
+.+++.+.+++.+|+..+. +...++.+++||++.++.
T Consensus 17 ~~~~~~a~~~~~~E~~~~~----~~~~~~~~a~y~~~~T~t 53 (103)
T 2k1e_A 17 KVLEEASKKAVEAERGAPG----AALISYPDAIWWSVETAT 53 (103)
T ss_dssp HHHHHHHHHHHHHHTTSTT----CCCCCGGGTTTTTTGGGG
T ss_pred HHHHHHHHhhhhhccCCCC----cccccHHHHHHHHHHHHh
Confidence 3344566777788876542 223467788888877654
No 191
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=59.61 E-value=23 Score=34.08 Aligned_cols=80 Identities=10% Similarity=0.091 Sum_probs=56.7
Q ss_pred cEEEEEEEc--CCCCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecCh-hhHHHHHH
Q 006567 165 NAVSVIFVD--NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP-SLGFQVFS 241 (640)
Q Consensus 165 ~~v~ii~~~--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~-~~~~~il~ 241 (640)
++|+++..+ +.|.......+++.+++.|..+..... . .+...-...++.+...++|.||+.... ......++
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~--~~~~~~~~~i~~~~~~~vdgiIi~~~~~~~~~~~~~ 78 (330)
T 3uug_A 4 GSVGIAMPTKSSARWIDDGNNIVKQLQEAGYKTDLQYA---D--DDIPNQLSQIENMVTKGVKVLVIASIDGTTLSDVLK 78 (330)
T ss_dssp CEEEEEECCSSSTHHHHHHHHHHHHHHHTTCEEEEEEC---T--TCHHHHHHHHHHHHHHTCSEEEECCSSGGGGHHHHH
T ss_pred cEEEEEeCCCcchHHHHHHHHHHHHHHHcCCEEEEeeC---C--CCHHHHHHHHHHHHHcCCCEEEEEcCCchhHHHHHH
Confidence 578888854 567777888899999999988765431 1 234445667777777889999987543 34567788
Q ss_pred HHHHcCCc
Q 006567 242 VAKYLGMM 249 (640)
Q Consensus 242 ~a~~~gl~ 249 (640)
++.+.|++
T Consensus 79 ~~~~~giP 86 (330)
T 3uug_A 79 QAGEQGIK 86 (330)
T ss_dssp HHHHTTCE
T ss_pred HHHHCCCC
Confidence 88887653
No 192
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=59.34 E-value=23 Score=33.22 Aligned_cols=82 Identities=11% Similarity=0.114 Sum_probs=56.3
Q ss_pred CCcEEEEEEEc--CCCCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEec-ChhhHHHH
Q 006567 163 GWNAVSVIFVD--NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHV-SPSLGFQV 239 (640)
Q Consensus 163 ~w~~v~ii~~~--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~-~~~~~~~i 239 (640)
+-++|+++..+ +.|.....+.+++.+++.|+.+..... . .+.......++.+...++|.||+.. +.......
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~----~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~ 81 (293)
T 3l6u_A 7 KRNIVGFTIVNDKHEFAQRLINAFKAEAKANKYEALVATS-Q----NSRISEREQILEFVHLKVDAIFITTLDDVYIGSA 81 (293)
T ss_dssp --CEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEEC-S----SCHHHHHHHHHHHHHTTCSEEEEECSCTTTTHHH
T ss_pred CCcEEEEEEecCCcHHHHHHHHHHHHHHHHcCCEEEEECC-C----CCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHH
Confidence 44678888753 446667788899999999988775432 1 2345556778888888999888874 44444567
Q ss_pred HHHHHHcCCc
Q 006567 240 FSVAKYLGMM 249 (640)
Q Consensus 240 l~~a~~~gl~ 249 (640)
++.+.+.|++
T Consensus 82 ~~~~~~~~iP 91 (293)
T 3l6u_A 82 IEEAKKAGIP 91 (293)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHHcCCC
Confidence 7888777653
No 193
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=58.61 E-value=64 Score=30.09 Aligned_cols=117 Identities=10% Similarity=0.061 Sum_probs=69.2
Q ss_pred EEEEEeecCCccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhc--CcEEEEcCCChHHHH
Q 006567 33 NVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMET--DIVAIIGPQCSTVAH 110 (640)
Q Consensus 33 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~--~v~aiiGp~~s~~~~ 110 (640)
+||++.............|++.|+++.+- ..... +.....+...+.+.+.+++.. .+.||+...+. .+.
T Consensus 128 ~I~~i~~~~~~~~~~R~~Gf~~al~~~g~------~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~-~A~ 198 (289)
T 3k9c_A 128 NIAHIDGADAPGGADRRAGFLAAMDRHGL------SASAT--VVTGGTTETEGAEGMHTLLEMPTPPTAVVAFNDR-CAT 198 (289)
T ss_dssp SEEEECCTTSTTHHHHHHHHHHHHHHTTC------GGGEE--EECCCSSHHHHHHHHHHHHTSSSCCSEEEESSHH-HHH
T ss_pred cEEEEeCCCCccHHHHHHHHHHHHHHCCC------CCCcc--EEECCCCHHHHHHHHHHHHcCCCCCCEEEECChH-HHH
Confidence 67777765433445667888888877431 11122 233455677777888888875 68899975443 333
Q ss_pred HHHHhhccC------CceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHH
Q 006567 111 IVSYVSNEL------QVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVS 160 (640)
Q Consensus 111 ~v~~~~~~~------~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~ 160 (640)
.+...+.+. +|.++++... .+.....|.+..+..+...+++..+++|.
T Consensus 199 g~~~al~~~g~~vP~di~vig~D~~--~~~~~~~p~lttv~~~~~~~g~~a~~~l~ 252 (289)
T 3k9c_A 199 GVLDLLVRSGRDVPADISVVGYDDS--RLARIPHVQMTTISQDATHMAEAAVDGAL 252 (289)
T ss_dssp HHHHHHHHTTCCTTTTCEEEEEECC--TTTTCTTTCCEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCceEEEEECCH--HHHhcCCCCcceEecCHHHHHHHHHHHHH
Confidence 344444433 3346765433 23332235556666777888888887654
No 194
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=58.24 E-value=32 Score=32.23 Aligned_cols=80 Identities=10% Similarity=0.020 Sum_probs=56.9
Q ss_pred cEEEEEEEc--CCCCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecChh----hHHH
Q 006567 165 NAVSVIFVD--NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPS----LGFQ 238 (640)
Q Consensus 165 ~~v~ii~~~--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~----~~~~ 238 (640)
++|+++..+ +.|.....+.+++.+++.|..+.....- .+...-...++.+...+.|.||+..... ....
T Consensus 16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-----~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~ 90 (298)
T 3tb6_A 16 KTIGVLTTYISDYIFPSIIRGIESYLSEQGYSMLLTSTN-----NNPDNERRGLENLLSQHIDGLIVEPTKSALQTPNIG 90 (298)
T ss_dssp CEEEEEESCSSSTTHHHHHHHHHHHHHHTTCEEEEEECT-----TCHHHHHHHHHHHHHTCCSEEEECCSSTTSCCTTHH
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCC-----CChHHHHHHHHHHHHCCCCEEEEecccccccCCcHH
Confidence 789998863 5577778889999999999887754321 2244556778888888999999875332 3446
Q ss_pred HHHHHHHcCCc
Q 006567 239 VFSVAKYLGMM 249 (640)
Q Consensus 239 il~~a~~~gl~ 249 (640)
.++.+.+.|++
T Consensus 91 ~~~~~~~~~iP 101 (298)
T 3tb6_A 91 YYLNLEKNGIP 101 (298)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHhcCCC
Confidence 67777777653
No 195
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=58.03 E-value=26 Score=32.89 Aligned_cols=80 Identities=5% Similarity=0.019 Sum_probs=56.9
Q ss_pred cEEEEEEEc--CCCCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecC-hhhHHHHHH
Q 006567 165 NAVSVIFVD--NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVS-PSLGFQVFS 241 (640)
Q Consensus 165 ~~v~ii~~~--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~-~~~~~~il~ 241 (640)
++|+++..+ +.|.....+.+++.+++.|+.+..... . .+.......++.+...++|.||+... .......++
T Consensus 6 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~----~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~ 80 (291)
T 3l49_A 6 KTIGITAIGTDHDWDLKAYQAQIAEIERLGGTAIALDA-G----RNDQTQVSQIQTLIAQKPDAIIEQLGNLDVLNPWLQ 80 (291)
T ss_dssp CEEEEEESCCSSHHHHHHHHHHHHHHHHTTCEEEEEEC-T----TCHHHHHHHHHHHHHHCCSEEEEESSCHHHHHHHHH
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEcC-C----CCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHH
Confidence 578888753 446666788899999999988775532 1 23445567788888889999998754 345667788
Q ss_pred HHHHcCCc
Q 006567 242 VAKYLGMM 249 (640)
Q Consensus 242 ~a~~~gl~ 249 (640)
.+.+.|++
T Consensus 81 ~~~~~~iP 88 (291)
T 3l49_A 81 KINDAGIP 88 (291)
T ss_dssp HHHHTTCC
T ss_pred HHHHCCCc
Confidence 88887754
No 196
>2y7p_A LYSR-type regulatory protein; transcription regulator, DNA-binding, transcription, transcr factor, transcription regulation; HET: SAL PEU; 1.85A {Burkholderia SP} PDB: 2y7k_A* 2y84_A 2y7w_A 2y7r_A
Probab=57.74 E-value=19 Score=32.06 Aligned_cols=84 Identities=11% Similarity=0.101 Sum_probs=57.7
Q ss_pred CCeEEEEeecCCCccceEEeecCCcceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHhhHHHHHHcCcccEEEee
Q 006567 464 GKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGD 543 (640)
Q Consensus 464 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~~~~~ 543 (640)
.++|+|++.. .-...+-..++..+.++.. ++++++.. ++...++..|.+|++|++++.
T Consensus 7 ~g~l~Ig~~~--------------~~~~~~lp~~l~~f~~~~P-~v~l~l~~-------~~~~~l~~~L~~g~iDl~i~~ 64 (218)
T 2y7p_A 7 TRTFNLAMTD--------------IGEMYFMPPLMEALAQRAP-HIQISTLR-------PNAGNLKEDMESGAVDLALGL 64 (218)
T ss_dssp CCEEEEECCH--------------HHHHHHHHHHHHHHHHHCT-TCEEEEEC-------CCTTTHHHHHHHTSSCEEEEC
T ss_pred ceEEEEEecH--------------HHHHHHHHHHHHHHHHHCC-CCEEEEEe-------CCcccHHHHHhCCCceEEEec
Confidence 3678888752 1122456678888888875 44466655 567899999999999999853
Q ss_pred eeeeccccceEEeCccccccceEEEEecCC
Q 006567 544 ITIVTNRTKIVDFSQPYAASGLVVVVPFRK 573 (640)
Q Consensus 544 ~~~t~~R~~~vdfs~p~~~~~~~il~~~~~ 573 (640)
.. .....+++ .|++...+.+++++..
T Consensus 65 ~~---~~~~~l~~-~~l~~~~~~~v~~~~h 90 (218)
T 2y7p_A 65 LP---ELQTGFFQ-RRLFRHRYVCMFRKDH 90 (218)
T ss_dssp CT---TCCTTEEE-EEEEEECEEEEEETTC
T ss_pred CC---CCCcceeE-EEeeeccEEEEEcCCC
Confidence 22 22233443 5788889999988765
No 197
>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A
Probab=57.14 E-value=49 Score=30.54 Aligned_cols=86 Identities=14% Similarity=0.085 Sum_probs=57.1
Q ss_pred HHHHHHHHhcCCcEEEEEEEcCCCCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecC
Q 006567 153 TAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVS 232 (640)
Q Consensus 153 ~al~~ll~~~~w~~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~ 232 (640)
..++...... -.-+.++. |..|.....+.++..-+.-++.|.....+ .. .+ ++.+.+..++|+|++.+.
T Consensus 64 ~~iA~~y~~~-A~~IsVlT-d~~~F~gs~~dL~~ir~~v~lPvLrKDfi-~~------~~--qi~ea~~~GAD~ilLi~a 132 (251)
T 1i4n_A 64 EDFIRMYDEL-ADAISILT-EKHYFKGDPAFVRAARNLTCRPILAKDFY-ID------TV--QVKLASSVGADAILIIAR 132 (251)
T ss_dssp HHHHHHHHHH-CSEEEEEC-CCSSSCCCTHHHHHHHTTCCSCEEEECCC-CS------TH--HHHHHHHTTCSEEEEEGG
T ss_pred HHHHHHHHHh-CCceEEEe-cccccCCCHHHHHHHHHhCCCCEEEeeCC-CC------HH--HHHHHHHcCCCEEEEecc
Confidence 3444444444 45666665 66677777787877665556666644433 11 22 466688899999999855
Q ss_pred h---hhHHHHHHHHHHcCCc
Q 006567 233 P---SLGFQVFSVAKYLGMM 249 (640)
Q Consensus 233 ~---~~~~~il~~a~~~gl~ 249 (640)
. .+...+++.|+++||.
T Consensus 133 ~l~~~~l~~l~~~a~~lGl~ 152 (251)
T 1i4n_A 133 ILTAEQIKEIYEAAEELGMD 152 (251)
T ss_dssp GSCHHHHHHHHHHHHTTTCE
T ss_pred cCCHHHHHHHHHHHHHcCCe
Confidence 4 5788999999999885
No 198
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=57.13 E-value=27 Score=32.46 Aligned_cols=79 Identities=11% Similarity=0.023 Sum_probs=56.2
Q ss_pred CcEEEEEEEc--CCCCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecChhhHHHHHH
Q 006567 164 WNAVSVIFVD--NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFS 241 (640)
Q Consensus 164 w~~v~ii~~~--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~il~ 241 (640)
-++|+++..+ +.|.......+++.+++.|..+..... . .+...-...++.+...++|.||+..... ...++
T Consensus 7 s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~----~~~~~~~~~~~~l~~~~vdgiIi~~~~~--~~~~~ 79 (276)
T 3jy6_A 7 SKLIAVIVANIDDYFSTELFKGISSILESRGYIGVLFDA-N----ADIEREKTLLRAIGSRGFDGLILQSFSN--PQTVQ 79 (276)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHTTTCEEEEEEC-T----TCHHHHHHHHHHHHTTTCSEEEEESSCC--HHHHH
T ss_pred CcEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeC-C----CCHHHHHHHHHHHHhCCCCEEEEecCCc--HHHHH
Confidence 3578888854 456667788899999999988775432 1 2244556778888888999999886554 66777
Q ss_pred HHHHcCCc
Q 006567 242 VAKYLGMM 249 (640)
Q Consensus 242 ~a~~~gl~ 249 (640)
.+.+.|++
T Consensus 80 ~l~~~~iP 87 (276)
T 3jy6_A 80 EILHQQMP 87 (276)
T ss_dssp HHHTTSSC
T ss_pred HHHHCCCC
Confidence 77776653
No 199
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=56.98 E-value=24 Score=32.05 Aligned_cols=162 Identities=12% Similarity=0.061 Sum_probs=93.1
Q ss_pred eEEEEEEeecCCccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhc-CcEEEEcCCChHHH
Q 006567 31 VVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMET-DIVAIIGPQCSTVA 109 (640)
Q Consensus 31 ~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~-~v~aiiGp~~s~~~ 109 (640)
..+|.+++|.. ....-++-++.+.+. ... +.+.+ .+-..++..+.+++.+ ++.+||. ...++
T Consensus 12 m~~ii~i~~~~-----~L~~~~~~i~~e~~~------~~~--I~vi~--~~le~av~~a~~~~~~~~~dVIIS--RGgta 74 (225)
T 2pju_A 12 DKPVIWTVSVT-----RLFELFRDISLEFDH------LAN--ITPIQ--LGFEKAVTYIRKKLANERCDAIIA--AGSNG 74 (225)
T ss_dssp -CCEEEEECCH-----HHHHHHHHHHTTTTT------TCE--EEEEC--CCHHHHHHHHHHHTTTSCCSEEEE--EHHHH
T ss_pred CCCEEEEEchH-----HHHHHHHHHHHhhCC------Cce--EEEec--CcHHHHHHHHHHHHhcCCCeEEEe--CChHH
Confidence 45778888863 223333333332221 123 33433 3345677778887765 6889985 22233
Q ss_pred HHHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCCCCcccHHHHHHHHh
Q 006567 110 HIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLA 189 (640)
Q Consensus 110 ~~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~~~~~g~~~~~~~~~~~~ 189 (640)
..+. +..++|+|.... +..+..+++...-+ ++ ++++++...+.. ..+..+.+.+
T Consensus 75 ~~Lr---~~~~iPVV~I~v------------------s~~Dil~aL~~a~~-~~-~kIavVg~~~~~--~~~~~i~~ll- 128 (225)
T 2pju_A 75 AYLK---SRLSVPVILIKP------------------SGYDVLQFLAKAGK-LT-SSIGVVTYQETI--PALVAFQKTF- 128 (225)
T ss_dssp HHHH---TTCSSCEEEECC------------------CHHHHHHHHHHTTC-TT-SCEEEEEESSCC--HHHHHHHHHH-
T ss_pred HHHH---hhCCCCEEEecC------------------CHHHHHHHHHHHHh-hC-CcEEEEeCchhh--hHHHHHHHHh-
Confidence 3233 446899997421 23444566655544 33 589988654421 2344555544
Q ss_pred hcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecChhhHHHHHHHHHHcCCc
Q 006567 190 ERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVAKYLGMM 249 (640)
Q Consensus 190 ~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~il~~a~~~gl~ 249 (640)
|+++.... + .+..+....++++++.+.++||-.+. ..+.|++.||.
T Consensus 129 --~~~i~~~~-~-----~~~ee~~~~i~~l~~~G~~vVVG~~~------~~~~A~~~Gl~ 174 (225)
T 2pju_A 129 --NLRLDQRS-Y-----ITEEDARGQINELKANGTEAVVGAGL------ITDLAEEAGMT 174 (225)
T ss_dssp --TCCEEEEE-E-----SSHHHHHHHHHHHHHTTCCEEEESHH------HHHHHHHTTSE
T ss_pred --CCceEEEE-e-----CCHHHHHHHHHHHHHCCCCEEECCHH------HHHHHHHcCCc
Confidence 45555432 2 23778999999999999999877532 35677888875
No 200
>3qvl_A Putative hydantoin racemase; isomerase; HET: 5HY; 1.82A {Klebsiella pneumoniae subsp} PDB: 3qvk_A* 3qvj_A
Probab=56.74 E-value=64 Score=29.63 Aligned_cols=84 Identities=13% Similarity=0.061 Sum_probs=46.5
Q ss_pred EEEEEEeecCCccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCC-------ChHHHH----HHHHHhHhcCcEEE
Q 006567 32 VNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNC-------SGFIGM----VEALRFMETDIVAI 100 (640)
Q Consensus 32 i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~-------~~~~a~----~~a~~l~~~~v~ai 100 (640)
.+|.+|-|.++ ..+...+..+++.+. .+|.+|.....+.+. +...+. +.+.++..+|+.+|
T Consensus 2 mrilvINPnts---~~~T~~i~~~~~~~~-----~p~~~i~~~t~~~gp~~i~~~~d~~~a~~~l~~~~~~l~~~g~d~i 73 (245)
T 3qvl_A 2 VRIQVINPNTS---LAMTETIGAAARAVA-----APGTEILAVCPRAGVPSIEGHFDEAIAAVGVLEQIRAGREQGVDGH 73 (245)
T ss_dssp EEEEEECSSCC---HHHHHHHHHHHHHHC-----CTTEEEEEECCSSSCSSCCSHHHHHHHHHHHHHHHHHHHHHTCSEE
T ss_pred CEEEEEeCCCC---HHHHHHHHHHHHHhc-----CCCCEEEEEeCCCCchhhcChhHHHHHHHHHHHHHHHHHHCCCCEE
Confidence 47889999875 334556665555543 167888877665442 112222 22223334588877
Q ss_pred EcCCChHHHHHHHHhhccCCceEEe
Q 006567 101 IGPQCSTVAHIVSYVSNELQVPLLS 125 (640)
Q Consensus 101 iGp~~s~~~~~v~~~~~~~~iP~is 125 (640)
+-.-++... +..+-+..++|++.
T Consensus 74 viaCnt~~~--l~~lr~~~~iPvig 96 (245)
T 3qvl_A 74 VIASFGDPG--LLAARELAQGPVIG 96 (245)
T ss_dssp EEC-CCCTT--HHHHHHHCSSCEEE
T ss_pred EEeCCChhH--HHHHHHHcCCCEEC
Confidence 754443332 23344456788885
No 201
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=56.71 E-value=22 Score=34.92 Aligned_cols=109 Identities=7% Similarity=0.046 Sum_probs=68.3
Q ss_pred CcEEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCCCCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHH
Q 006567 139 PFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVK 218 (640)
Q Consensus 139 ~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~ 218 (640)
|+-+...+... +.+.++++.++.+++.++++...+. ...+.+.+.+++.|+++..... .++ .+.+..... +.
T Consensus 12 p~~i~~G~g~~---~~l~~~l~~~g~~~~livtd~~~~~-~~~~~v~~~L~~~g~~~~~~~~-~~~--~~~~~v~~~-~~ 83 (354)
T 3ce9_A 12 PLILEVGNNKI---YNIGQIIKKGNFKRVSLYFGEGIYE-LFGETIEKSIKSSNIEIEAVET-VKN--IDFDEIGTN-AF 83 (354)
T ss_dssp CSEEEEESSCG---GGHHHHHGGGTCSEEEEEEETTHHH-HHHHHHHHHHHTTTCEEEEEEE-ECC--CBHHHHHHH-HT
T ss_pred CcEEEECCCHH---HHHHHHHHhcCCCeEEEEECccHHH-HHHHHHHHHHHHcCCeEEEEec-CCC--CCHHHHHHH-HH
Confidence 44455554433 3356778888888999888654332 3567888888888887653322 233 346677777 78
Q ss_pred HhcCCceEEEEec--ChhhHHHHHHHHHHcCCccCCeEEEEeCc
Q 006567 219 VALMESRVIVLHV--SPSLGFQVFSVAKYLGMMGNGYVWIATDW 260 (640)
Q Consensus 219 l~~~~~~vivl~~--~~~~~~~il~~a~~~gl~~~~~~~i~~~~ 260 (640)
+++.++|.||-.+ +.-|+..++... .+ ..++-|-|..
T Consensus 84 ~~~~~~d~IIavGGGsv~D~aK~vA~~--~~---~p~i~IPTT~ 122 (354)
T 3ce9_A 84 KIPAEVDALIGIGGGKAIDAVKYMAFL--RK---LPFISVPTST 122 (354)
T ss_dssp TSCTTCCEEEEEESHHHHHHHHHHHHH--HT---CCEEEEESCC
T ss_pred hhhcCCCEEEEECChHHHHHHHHHHhh--cC---CCEEEecCcc
Confidence 8888899988664 445566655532 22 3456666554
No 202
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=56.57 E-value=21 Score=34.75 Aligned_cols=81 Identities=5% Similarity=-0.002 Sum_probs=56.0
Q ss_pred CcEEEEEEEc--C-CCCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhc--CCceEEEEecChhhHHH
Q 006567 164 WNAVSVIFVD--N-EYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVAL--MESRVIVLHVSPSLGFQ 238 (640)
Q Consensus 164 w~~v~ii~~~--~-~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~vivl~~~~~~~~~ 238 (640)
-.+|+++..+ + .|.....+.+++.+++.|+.+..... . .+.......++.+.. .++|.||+.........
T Consensus 3 ~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~g~~~~~~~~-~----~~~~~~~~~i~~~i~~~~~vDgiIi~~~~~~~~~ 77 (350)
T 3h75_A 3 LTSVVFLNPGNSTETFWVSYSQFMQAAARDLGLDLRILYA-E----RDPQNTLQQARELFQGRDKPDYLMLVNEQYVAPQ 77 (350)
T ss_dssp CCEEEEEECSCTTCHHHHHHHHHHHHHHHHHTCEEEEEEC-T----TCHHHHHHHHHHHHHSSSCCSEEEEECCSSHHHH
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHHHHHHcCCeEEEEEC-C----CCHHHHHHHHHHHHhcCCCCCEEEEeCchhhHHH
Confidence 3578888864 2 56777788899999999988775421 1 224444556677766 58999998765555667
Q ss_pred HHHHHHHcCCc
Q 006567 239 VFSVAKYLGMM 249 (640)
Q Consensus 239 il~~a~~~gl~ 249 (640)
+++.+.+.|++
T Consensus 78 ~~~~~~~~giP 88 (350)
T 3h75_A 78 ILRLSQGSGIK 88 (350)
T ss_dssp HHHHHTTSCCE
T ss_pred HHHHHHhCCCc
Confidence 78888776653
No 203
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=55.87 E-value=42 Score=33.71 Aligned_cols=93 Identities=17% Similarity=0.087 Sum_probs=59.6
Q ss_pred CcEEEEEEEcCCCCc--ccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecCh------hh
Q 006567 164 WNAVSVIFVDNEYGR--NGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP------SL 235 (640)
Q Consensus 164 w~~v~ii~~~~~~g~--~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~------~~ 235 (640)
=++|.|+|. ..||. ..++.+.+.+.+.|+.+......... ..+...++..+. +++.|++.++. ..
T Consensus 265 ~~~v~I~Y~-S~yGnTe~mA~~ia~gl~~~Gv~~~~~~~~d~~----~~~~s~i~~~i~--~~~~ivlGspT~~~~~~p~ 337 (410)
T 4dik_A 265 KGKVTVIYD-SMYGFVENVMKKAIDSLKEKGFTPVVYKFSDEE----RPAISEILKDIP--DSEALIFGVSTYEAEIHPL 337 (410)
T ss_dssp TTEEEEEEE-CSSSHHHHHHHHHHHHHHHTTCEEEEEEECSSC----CCCHHHHHHHST--TCSEEEEEECCTTSSSCHH
T ss_pred ccceeeEEe-cccChHHHHHHHHHHHHHhcCCceEEEEeccCC----CCCHHHHHHHHH--hCCeEEEEeCCcCCcCCHH
Confidence 358999994 34554 35678888888899887654444332 455666666654 46778887554 34
Q ss_pred HHHHHHHHHHcCCccCCeEEEEeCcccc
Q 006567 236 GFQVFSVAKYLGMMGNGYVWIATDWLAY 263 (640)
Q Consensus 236 ~~~il~~a~~~gl~~~~~~~i~~~~~~~ 263 (640)
...++.........+.....+++-+|..
T Consensus 338 ~~~~l~~l~~~~~~~K~~~~FGSyGWsg 365 (410)
T 4dik_A 338 MRFTLLEIIDKANYEKPVLVFGVHGWAP 365 (410)
T ss_dssp HHHHHHHHHHHCCCCCEEEEEEECCCCC
T ss_pred HHHHHHHHHhcccCCCEEEEEECCCCCc
Confidence 5567777777666555555667666653
No 204
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=55.79 E-value=16 Score=34.54 Aligned_cols=81 Identities=9% Similarity=-0.013 Sum_probs=55.6
Q ss_pred EEEEEEEc--CCCCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEec-ChhhHHHHHHH
Q 006567 166 AVSVIFVD--NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHV-SPSLGFQVFSV 242 (640)
Q Consensus 166 ~v~ii~~~--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~-~~~~~~~il~~ 242 (640)
+|+++..+ +.|.....+.+++.+++.|+.+.....-.. .+.......++.+...++|.||+.. +.......+++
T Consensus 5 ~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~---~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~ 81 (297)
T 3rot_A 5 KYYLITHGSQDPYWTSLFQGAKKAAEELKVDLQILAPPGA---NDVPKQVQFIESALATYPSGIATTIPSDTAFSKSLQR 81 (297)
T ss_dssp EEEEECSCCCSHHHHHHHHHHHHHHHHHTCEEEEECCSSS---CCHHHHHHHHHHHHHTCCSEEEECCCCSSTTHHHHHH
T ss_pred EEEEEecCCCCchHHHHHHHHHHHHHHhCcEEEEECCCCc---CCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHH
Confidence 67777643 557777788899999999988875432110 1345556778888888999988864 44444667788
Q ss_pred HHHcCCc
Q 006567 243 AKYLGMM 249 (640)
Q Consensus 243 a~~~gl~ 249 (640)
+.+.|++
T Consensus 82 ~~~~giP 88 (297)
T 3rot_A 82 ANKLNIP 88 (297)
T ss_dssp HHHHTCC
T ss_pred HHHCCCC
Confidence 8777653
No 205
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=55.66 E-value=25 Score=33.16 Aligned_cols=80 Identities=13% Similarity=0.053 Sum_probs=52.1
Q ss_pred cEEEEEEE--cCCCCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecCh-hhHHHHHH
Q 006567 165 NAVSVIFV--DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP-SLGFQVFS 241 (640)
Q Consensus 165 ~~v~ii~~--~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~-~~~~~il~ 241 (640)
.+|+++.. ++.|.....+.+++.+++.|+.+.... ... .+.......++.+...+.+.||+.... ......++
T Consensus 5 ~~Ig~i~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~--~~~--~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~ 80 (303)
T 3d02_A 5 KTVVNISKVDGMPWFNRMGEGVVQAGKEFNLNASQVG--PSS--TDAPQQVKIIEDLIARKVDAITIVPNDANVLEPVFK 80 (303)
T ss_dssp EEEEEECSCSSCHHHHHHHHHHHHHHHHTTEEEEEEC--CSS--SCHHHHHHHHHHHHHTTCSEEEECCSCHHHHHHHHH
T ss_pred eEEEEEeccCCChHHHHHHHHHHHHHHHcCCEEEEEC--CCC--CCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHH
Confidence 46777764 345666777888888999998875321 111 224445567777778889998887543 33445677
Q ss_pred HHHHcCC
Q 006567 242 VAKYLGM 248 (640)
Q Consensus 242 ~a~~~gl 248 (640)
.+.+.|+
T Consensus 81 ~~~~~~i 87 (303)
T 3d02_A 81 KARDAGI 87 (303)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 7777664
No 206
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=54.95 E-value=16 Score=35.06 Aligned_cols=81 Identities=14% Similarity=0.126 Sum_probs=53.4
Q ss_pred cEEEEEEE--cCCCCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEec-ChhhHHHHHH
Q 006567 165 NAVSVIFV--DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHV-SPSLGFQVFS 241 (640)
Q Consensus 165 ~~v~ii~~--~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~-~~~~~~~il~ 241 (640)
++|+++.. ++.|.....+.+++.+++.|+++.... +.. .+...-..+++.+...+++.||+.. +...+...++
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~--~~~--~d~~~q~~~i~~li~~~vdgiii~~~~~~~~~~~~~ 79 (316)
T 1tjy_A 4 ERIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYDG--PTE--PSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALK 79 (316)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHHHHHHTCEEEECC--CSS--CCHHHHHHHHHHHHHTTCSEEEECCSSSSTTHHHHH
T ss_pred CEEEEEeCCCCChHHHHHHHHHHHHHHHhCCEEEEEC--CCC--CCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHH
Confidence 47888764 345666677788888888898776421 111 2344455677888888999988864 3343456778
Q ss_pred HHHHcCCc
Q 006567 242 VAKYLGMM 249 (640)
Q Consensus 242 ~a~~~gl~ 249 (640)
.+++.|.+
T Consensus 80 ~a~~~gip 87 (316)
T 1tjy_A 80 RAMQRGVK 87 (316)
T ss_dssp HHHHTTCE
T ss_pred HHHHCcCE
Confidence 88877653
No 207
>1atg_A MODA, periplasmic molybdate-binding protein; tungstate, ABC transporter; 1.20A {Azotobacter vinelandii} SCOP: c.94.1.1
Probab=54.93 E-value=9 Score=34.39 Aligned_cols=72 Identities=13% Similarity=-0.002 Sum_probs=46.7
Q ss_pred eeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHhhHHHHHHcCc-ccEEEeeeeeecc---ccceEE--eCccccccceE
Q 006567 493 FCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGV-FDAVVGDITIVTN---RTKIVD--FSQPYAASGLV 566 (640)
Q Consensus 493 ~~~dl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~D~~~~~~~~t~~---R~~~vd--fs~p~~~~~~~ 566 (640)
+.-++++.+.++-|+++++ .. ++...++..|.+|+ +|+++..-....+ +...+. -..|+....+.
T Consensus 13 ~l~~~~~~F~~~p~i~v~~--~~-------~~s~~l~~~l~~g~~~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 83 (231)
T 1atg_A 13 TLEQLAGQFAKQTGHAVVI--SS-------GSSGPVYAQIVNGAPYNVFFSADEKSPEKLDNQGFALPGSRFTYAIGKLV 83 (231)
T ss_dssp HHHHHHHHHHHHHCCCEEE--EE-------ECHHHHHHHHHTTCCCSEEECSSSHHHHHHHHTTCBCTTCCEEEEECCEE
T ss_pred HHHHHHHHHHhccCCeEEE--EE-------CCcHHHHHHHHcCCCCCEEEeCChhHHHHHHhcCCCcCCceeEeeeeeEE
Confidence 3446777777777777444 33 45788999999998 9998763221111 112211 14678888999
Q ss_pred EEEecCC
Q 006567 567 VVVPFRK 573 (640)
Q Consensus 567 il~~~~~ 573 (640)
+++++..
T Consensus 84 lv~~~~~ 90 (231)
T 1atg_A 84 LWSAKPG 90 (231)
T ss_dssp EEESSTT
T ss_pred EEEcCCC
Confidence 9998765
No 208
>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A
Probab=54.33 E-value=1.6e+02 Score=28.60 Aligned_cols=134 Identities=12% Similarity=0.153 Sum_probs=76.0
Q ss_pred EEEEEEeecCCccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcCcEEEEcCCChHHHHH
Q 006567 32 VNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTVAHI 111 (640)
Q Consensus 32 i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aiiGp~~s~~~~~ 111 (640)
-.|+.+|...+. ..+..|+.|+.++ +|..+.+...+++-.-.+.+.-..+.++.-+++|+-=... ...
T Consensus 42 K~la~lF~epST---RTR~SFE~A~~~L-------Gg~vi~l~~~~ssl~kgEsl~DTarvLs~y~D~IviR~~~--~~~ 109 (355)
T 4a8p_A 42 KSLGMIFQQSST---RTRVSFETAMEQL-------GGHGEYLAPGQIQLGGHETIEDTSRVLSRLVDILMARVER--HHS 109 (355)
T ss_dssp CEEEEEESSCCS---HHHHHHHHHHHHT-------TCEEEEECBTTBCBTTTBCHHHHHHHHTTTCSEEEEECSS--HHH
T ss_pred CEEEEEecCCCh---hhHhhHHHHHHHc-------CCeEEEeCcccccCCCCcCHHHHHHHHHHhCCEEEEecCc--HHH
Confidence 467888887642 4688999999885 4555555433333222222333333444435555431111 233
Q ss_pred HHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHH---Hhc--C--C--cEEEEEEEcCCCCcccHH
Q 006567 112 VSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMV---SYY--G--W--NAVSVIFVDNEYGRNGVS 182 (640)
Q Consensus 112 v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll---~~~--~--w--~~v~ii~~~~~~g~~~~~ 182 (640)
+..++...++|+|.-+ + +...| .++++|++ +++ | + .+|+++. |. ...+.
T Consensus 110 ~~~lA~~~~vPVINag--~----~~~HP------------tQaLaDl~TI~E~~~~G~~l~glkva~vG--D~--~rva~ 167 (355)
T 4a8p_A 110 IVDLANCATIPVINGM--S----DYNHP------------TQELGDLCTMVEHLPEGKKLEDCKVVFVG--DA--TQVCF 167 (355)
T ss_dssp HHHHHHHCSSCEEECC--C----SSCCH------------HHHHHHHHHHHHTCCTTCCGGGCEEEEES--CC--CHHHH
T ss_pred HHHHHHhCCCCEEeCC--C----CCCCc------------HHHHHHHHHHHHHhhcCCCCCCCEEEEEC--CC--chhHH
Confidence 4555566789999732 2 12233 38888864 355 4 3 4666553 32 45677
Q ss_pred HHHHHHhhcCeEEEEee
Q 006567 183 ALNDKLAERRCRISYKS 199 (640)
Q Consensus 183 ~~~~~~~~~g~~v~~~~ 199 (640)
.+...+...|.++....
T Consensus 168 Sl~~~~~~~G~~v~~~~ 184 (355)
T 4a8p_A 168 SLGLITTKMGMNFVHFG 184 (355)
T ss_dssp HHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHcCCEEEEEC
Confidence 77778888898776543
No 209
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=54.16 E-value=64 Score=23.89 Aligned_cols=46 Identities=13% Similarity=0.262 Sum_probs=21.1
Q ss_pred CchHHHHHHHHHHHhcCCcEEEEEEEcCCCCcccHHHHHHHHhhcCeEE
Q 006567 147 SDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRI 195 (640)
Q Consensus 147 ~~~~~~~al~~ll~~~~w~~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v 195 (640)
.+...+.....+++..|-.-..|+|+.| +..++.|....+..|..+
T Consensus 59 ddkewaekairfvkslgaqvliiiydqd---qnrleefsrevrrrgfev 104 (134)
T 2l69_A 59 DDKEWAEKAIRFVKSLGAQVLIIIYDQD---QNRLEEFSREVRRRGFEV 104 (134)
T ss_dssp SSHHHHHHHHHHHHHHCCCCEEEEECSC---HHHHHHHHHHHHHTTCCE
T ss_pred ccHHHHHHHHHHHHhcCCeEEEEEEeCc---hhHHHHHHHHHHhcCceE
Confidence 3344444445555555555555555322 123444444444455443
No 210
>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}
Probab=54.09 E-value=1.4e+02 Score=28.79 Aligned_cols=132 Identities=12% Similarity=0.163 Sum_probs=71.3
Q ss_pred EEEEEEeecCCccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcCcEEEEc-CCChHHHH
Q 006567 32 VNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIG-PQCSTVAH 110 (640)
Q Consensus 32 i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aiiG-p~~s~~~~ 110 (640)
-.|+.+|...+. ..+..|+.|+.++ +|..+.+...+++-.-.+.+.-..+.++.-+++|+- ... ..
T Consensus 64 k~la~lF~e~ST---RTR~SFE~A~~~L-------Gg~~i~l~~~~ssl~kgEsl~DTarvLs~~~D~IviR~~~---~~ 130 (339)
T 4a8t_A 64 KSLGMIFQQSST---RTRVSFETAMEQL-------GGHGEYLAPGQIQLGGHETIEDTSRVLSRLVDILMARVER---HH 130 (339)
T ss_dssp CEEEEEESSCCS---HHHHHHHHHHHHT-------TCEEEEECCC-CCSSSSSCHHHHHHHHHHHCSEEEEECSS---HH
T ss_pred ceEEEEecCCCc---hHHHHHHHHHHHc-------CCeEEEeCcccccCCCCcCHHHHHHHHHHhCCEEEEecCc---HH
Confidence 467888877642 4588999999885 455554433333211111122222222221333332 122 23
Q ss_pred HHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHH---Hhc--C--C--cEEEEEEEcCCCCcccH
Q 006567 111 IVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMV---SYY--G--W--NAVSVIFVDNEYGRNGV 181 (640)
Q Consensus 111 ~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll---~~~--~--w--~~v~ii~~~~~~g~~~~ 181 (640)
.+..++...++|+|.-+ + +...| .++++|++ +++ | . .+|+++. |. ...+
T Consensus 131 ~~~~lA~~~~vPVINag--~----~~~HP------------tQaLaDl~Ti~e~~~~G~~l~glkva~vG--D~--~rva 188 (339)
T 4a8t_A 131 SIVDLANCATIPVINGM--S----DYNHP------------TQELGDLCTMVEHLPEGKKLEDCKVVFVG--DA--TQVC 188 (339)
T ss_dssp HHHHHHHHCSSCEEECC--C----SSCCH------------HHHHHHHHHHHHTCCTTCCGGGCEEEEES--SC--CHHH
T ss_pred HHHHHHHhCCCCEEECC--C----CCcCc------------HHHHHHHHHHHHHhhcCCCCCCCEEEEEC--CC--chhH
Confidence 34455566789999732 2 12233 38888864 355 4 3 4666553 32 4567
Q ss_pred HHHHHHHhhcCeEEEEe
Q 006567 182 SALNDKLAERRCRISYK 198 (640)
Q Consensus 182 ~~~~~~~~~~g~~v~~~ 198 (640)
..+...+...|.++...
T Consensus 189 ~Sl~~~~~~~G~~v~~~ 205 (339)
T 4a8t_A 189 FSLGLITTKMGMNFVHF 205 (339)
T ss_dssp HHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHcCCEEEEE
Confidence 77777888888877654
No 211
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=53.80 E-value=1e+02 Score=28.72 Aligned_cols=87 Identities=16% Similarity=0.041 Sum_probs=60.5
Q ss_pred HHHHHHHHhcCCcEEEEEEEcCCCCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEec-
Q 006567 153 TAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHV- 231 (640)
Q Consensus 153 ~al~~ll~~~~w~~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~- 231 (640)
..++......|-.-+.++. +..+.....+.++..-+..++.|.....+. . .. ++.+.+..++|.|++.+
T Consensus 82 ~~~A~~y~~~GA~~IsVlt-d~~~f~Gs~~~L~~ir~~v~lPVl~Kdfi~-d----~~----qi~ea~~~GAD~VlLi~a 151 (272)
T 3tsm_A 82 PALAKAYEEGGAACLSVLT-DTPSFQGAPEFLTAARQACSLPALRKDFLF-D----PY----QVYEARSWGADCILIIMA 151 (272)
T ss_dssp HHHHHHHHHTTCSEEEEEC-CSTTTCCCHHHHHHHHHTSSSCEEEESCCC-S----TH----HHHHHHHTTCSEEEEETT
T ss_pred HHHHHHHHHCCCCEEEEec-cccccCCCHHHHHHHHHhcCCCEEECCccC-C----HH----HHHHHHHcCCCEEEEccc
Confidence 5567777778889998886 444544667777666555566665443222 1 11 56778889999999975
Q ss_pred --ChhhHHHHHHHHHHcCCc
Q 006567 232 --SPSLGFQVFSVAKYLGMM 249 (640)
Q Consensus 232 --~~~~~~~il~~a~~~gl~ 249 (640)
+..++..+++.++++||.
T Consensus 152 ~L~~~~l~~l~~~a~~lGl~ 171 (272)
T 3tsm_A 152 SVDDDLAKELEDTAFALGMD 171 (272)
T ss_dssp TSCHHHHHHHHHHHHHTTCE
T ss_pred ccCHHHHHHHHHHHHHcCCe
Confidence 345678899999999974
No 212
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=53.64 E-value=23 Score=35.12 Aligned_cols=108 Identities=13% Similarity=0.016 Sum_probs=68.0
Q ss_pred CcEEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCCCCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHH
Q 006567 139 PFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVK 218 (640)
Q Consensus 139 ~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~ 218 (640)
|+-+...+... ..+.++++.++ +++.+|++...+. ...+.+.+.+++.|+.+.. ..+... .+.+.+....+.
T Consensus 10 p~~i~~G~g~~---~~l~~~l~~~g-~~~livtd~~~~~-~~~~~v~~~L~~~g~~~~~-~~~~ge--~~~~~v~~~~~~ 81 (370)
T 1jq5_A 10 PAKYVQGKNVI---TKIANYLEGIG-NKTVVIADEIVWK-IAGHTIVNELKKGNIAAEE-VVFSGE--ASRNEVERIANI 81 (370)
T ss_dssp CSEEEEETTGG---GGHHHHHTTTC-SEEEEEECHHHHH-HTHHHHHHHHHTTTCEEEE-EECCSS--CBHHHHHHHHHH
T ss_pred CCeEEECcCHH---HHHHHHHHHcC-CeEEEEEChHHHH-HHHHHHHHHHHHcCCeEEE-EeeCCC--CCHHHHHHHHHH
Confidence 44444554432 33566777778 8999888544332 3577888888888887753 223332 345678888888
Q ss_pred HhcCCceEEEEec--ChhhHHHHHHHHHHcCCccCCeEEEEeC
Q 006567 219 VALMESRVIVLHV--SPSLGFQVFSVAKYLGMMGNGYVWIATD 259 (640)
Q Consensus 219 l~~~~~~vivl~~--~~~~~~~il~~a~~~gl~~~~~~~i~~~ 259 (640)
+++.++|.||-.+ +.-|+..++... .| ..++-|-|.
T Consensus 82 ~~~~~~d~IIavGGGsv~D~aK~iA~~--~~---~p~i~IPTT 119 (370)
T 1jq5_A 82 ARKAEAAIVIGVGGGKTLDTAKAVADE--LD---AYIVIVPTA 119 (370)
T ss_dssp HHHTTCSEEEEEESHHHHHHHHHHHHH--HT---CEEEEEESS
T ss_pred HHhcCCCEEEEeCChHHHHHHHHHHHh--cC---CCEEEeccc
Confidence 8889999998664 455666665532 23 345656554
No 213
>1twy_A ABC transporter, periplasmic substrate-binding PR; nysgxrc target, structural genomics, protei structure initiative, PSI; 1.65A {Vibrio cholerae o1 biovar eltor} SCOP: c.94.1.1
Probab=53.59 E-value=22 Score=33.18 Aligned_cols=71 Identities=13% Similarity=0.048 Sum_probs=48.3
Q ss_pred eeHHHHHHHHHhC-CCCccEEEEEcCCCCCCCCHhhHHHHHHcCcccEEEeeeeeecccc-ceEEeCccccccceEEEEe
Q 006567 493 FCIDVFTAAVNLL-PYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDITIVTNRT-KIVDFSQPYAASGLVVVVP 570 (640)
Q Consensus 493 ~~~dl~~~i~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~~~~~~~~t~~R~-~~vdfs~p~~~~~~~il~~ 570 (640)
+-.+++..+.++. +++ +++.. ++...++..|.+|++|+++.......++. +.+. ..|+....+.++++
T Consensus 41 ~l~~~l~~f~~~~P~i~--v~i~~-------~~~~~~~~~l~~g~~Di~i~~~~~~~~~~~~~~~-~~~l~~~~~~~v~~ 110 (290)
T 1twy_A 41 IMDVLAEKYNQQHPETY--VAVQG-------VGSTAGISLLKKGVADIAMTSRYLTESEAQNTLH-TFTLAFDGLAIVVN 110 (290)
T ss_dssp HHHHHHHHHHHHCTTCE--EEEEE-------SCHHHHHHHHHTTSCSEEEESSCCCTTTCCTTCE-EEEEEEEEEEEEEC
T ss_pred HHHHHHHHHHhhCCCce--EEEEe-------cCcHHHHHHHhcCCCcEEEecCCCchhhhhcCce-EEEEEeeeEEEEEC
Confidence 4456788888887 555 66555 56889999999999999986543322110 2222 35778888888887
Q ss_pred cCC
Q 006567 571 FRK 573 (640)
Q Consensus 571 ~~~ 573 (640)
+..
T Consensus 111 ~~~ 113 (290)
T 1twy_A 111 QAN 113 (290)
T ss_dssp TTC
T ss_pred CCC
Confidence 655
No 214
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=53.43 E-value=38 Score=32.74 Aligned_cols=84 Identities=8% Similarity=0.038 Sum_probs=53.9
Q ss_pred HHhcCCcEEEEEEEc--CCCCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecChhhH
Q 006567 159 VSYYGWNAVSVIFVD--NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLG 236 (640)
Q Consensus 159 l~~~~w~~v~ii~~~--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~ 236 (640)
++...-+.|+++..+ +.|.....+.+++.+++.|..+..... . .+.......++.+...+.|.||+.......
T Consensus 57 l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~----~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~ 131 (339)
T 3h5o_A 57 LASAKSRTVLVLIPSLANTVFLETLTGIETVLDAAGYQMLIGNS-H----YDAGQELQLLRAYLQHRPDGVLITGLSHAE 131 (339)
T ss_dssp ------CEEEEEESCSTTCTTHHHHHHHHHHHHHTTCEEEEEEC-T----TCHHHHHHHHHHHHTTCCSEEEEECSCCCT
T ss_pred hhcCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeC-C----CChHHHHHHHHHHHcCCCCEEEEeCCCCCH
Confidence 344445678888753 557778888999999999988765331 1 224455677888888899999887533222
Q ss_pred HHHHHHHHHcCC
Q 006567 237 FQVFSVAKYLGM 248 (640)
Q Consensus 237 ~~il~~a~~~gl 248 (640)
..++.+.+.++
T Consensus 132 -~~~~~l~~~~i 142 (339)
T 3h5o_A 132 -PFERILSQHAL 142 (339)
T ss_dssp -THHHHHHHTTC
T ss_pred -HHHHHHhcCCC
Confidence 45566666664
No 215
>2dwu_A Glutamate racemase; isomerase; HET: DGL; 1.60A {Bacillus anthracis}
Probab=52.67 E-value=1e+02 Score=28.86 Aligned_cols=39 Identities=10% Similarity=0.160 Sum_probs=25.4
Q ss_pred HHHHHhHhcCcEEEEcCCChHHHHHHHHhhccCCceEEe
Q 006567 87 VEALRFMETDIVAIIGPQCSTVAHIVSYVSNELQVPLLS 125 (640)
Q Consensus 87 ~~a~~l~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is 125 (640)
+.+..|.++|+.+|+-+=++.++..+..+-+..++|+|.
T Consensus 60 ~~~~~L~~~g~d~IViACNTas~~~l~~lr~~~~iPVig 98 (276)
T 2dwu_A 60 EMVEFLKQFPLKALVVACNTAAAATLAALQEALSIPVIG 98 (276)
T ss_dssp HHHHHHTTSCEEEEEECCHHHHHHHHHHHHHHCSSCEEE
T ss_pred HHHHHHHHCCCCEEEEeCCcHHHHHHHHHHHHCCCCEEe
Confidence 344445556999988744444434566666777899986
No 216
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=52.57 E-value=45 Score=31.06 Aligned_cols=83 Identities=10% Similarity=0.016 Sum_probs=55.8
Q ss_pred CeEEEEeecCCCccceEEeecCCcceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHhhHHHHHHcCcccEEEeee
Q 006567 465 KLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDI 544 (640)
Q Consensus 465 ~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~~~~~~ 544 (640)
++|+|++... -...+..+++..+.++.. ++++++.. +....++..|.+|++|+++...
T Consensus 91 g~l~Ig~~~~--------------~~~~~l~~~l~~f~~~~P-~i~l~~~~-------~~~~~~~~~l~~g~~Dl~i~~~ 148 (294)
T 1ixc_A 91 GELSVAYFGT--------------PIYRSLPLLLRAFLTSTP-TATVSLTH-------MTKDEQVEGLLAGTIHVGFSRF 148 (294)
T ss_dssp EEEEEEECSG--------------GGGTHHHHHHHHHHHHCT-TEEEEEEE-------CCHHHHHHHHHHTSCSEEEESC
T ss_pred ceEEEEEccc--------------hhHHHHHHHHHHHHHHCC-CcEEEEEe-------CCHHHHHHHHHCCCccEEEEec
Confidence 5789988521 122456678888888875 44466665 5578899999999999998644
Q ss_pred eeeccccceEEeCccccccceEEEEecCC
Q 006567 545 TIVTNRTKIVDFSQPYAASGLVVVVPFRK 573 (640)
Q Consensus 545 ~~t~~R~~~vdfs~p~~~~~~~il~~~~~ 573 (640)
... ...+. +.+.....+.+++++..
T Consensus 149 ~~~---~~~l~-~~~l~~~~~~~v~~~~~ 173 (294)
T 1ixc_A 149 FPR---HPGIE-IVNIAQEDLYLAVHRSQ 173 (294)
T ss_dssp CCC---CTTEE-EEEEEEEEEEEEEEGGG
T ss_pred CCC---CCCce-EEEEeeccEEEEEeCCC
Confidence 322 22222 35777788888887654
No 217
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=52.32 E-value=32 Score=33.49 Aligned_cols=69 Identities=4% Similarity=-0.083 Sum_probs=42.5
Q ss_pred HHhcCCcEEEEEEEc--CCCCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEec
Q 006567 159 VSYYGWNAVSVIFVD--NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHV 231 (640)
Q Consensus 159 l~~~~w~~v~ii~~~--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~ 231 (640)
|+.-.-..|+++..+ +.|.......+++.+++.|..+..... . . .+.......++.+...+.|.||+..
T Consensus 56 l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~-~--~~~~~~~~~l~~l~~~~vdGiIi~~ 126 (349)
T 1jye_A 56 LAGKQSLLIGVATSSLALHAPSQIVAAILSRADQLGASVVVSMV-E-R--SGVEACKTAVHNLLAQRVSGLIINY 126 (349)
T ss_dssp ------CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC-C-S--SSHHHHHHHHHHHHTTTCSCEEEES
T ss_pred hhcCCCCEEEEEeCCCCcccHHHHHHHHHHHHHHcCCEEEEEeC-C-C--CcHHHHHHHHHHHHHCCCCEEEEec
Confidence 333344678888754 345556778888889999988765432 1 1 1123445677788888899888864
No 218
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=51.62 E-value=21 Score=35.10 Aligned_cols=97 Identities=12% Similarity=0.088 Sum_probs=61.8
Q ss_pred HHHHHHHHhcCCcEEEEEEEcCCCCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecC
Q 006567 153 TAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVS 232 (640)
Q Consensus 153 ~al~~ll~~~~w~~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~ 232 (640)
+.+.++++.++.+++.+|++.... ...+.+.+.+++.++.+ + ..+.++ .+.+.....++.+++.++|.||-.+.
T Consensus 23 ~~l~~~l~~~g~~r~liVtd~~~~--~~~~~v~~~L~~~~~~v-~-~~v~~~--p~~~~v~~~~~~~~~~~~D~IIavGG 96 (353)
T 3hl0_A 23 ADVAEEIRRLGLSRALVLSTPQQK--GDAEALASRLGRLAAGV-F-SEAAMH--TPVEVTKTAVEAYRAAGADCVVSLGG 96 (353)
T ss_dssp GGHHHHHHHTTCCCEEEECCGGGH--HHHHHHHHHHGGGEEEE-E-CCCCTT--CBHHHHHHHHHHHHHTTCSEEEEEES
T ss_pred HHHHHHHHHhCCCEEEEEecCchh--hHHHHHHHHHhhCCcEE-e-cCcCCC--CcHHHHHHHHHHHhccCCCEEEEeCC
Confidence 446778888999999988865433 34677888887765433 2 222333 44667888888889999999887744
Q ss_pred --hhhHHHHHHHHHHcCCccCCeEEEEeCc
Q 006567 233 --PSLGFQVFSVAKYLGMMGNGYVWIATDW 260 (640)
Q Consensus 233 --~~~~~~il~~a~~~gl~~~~~~~i~~~~ 260 (640)
.-|+..++.. ..+ ..++-|-|..
T Consensus 97 Gs~iD~aK~iA~--~~~---~p~i~IPTTa 121 (353)
T 3hl0_A 97 GSTTGLGKAIAL--RTD---AAQIVIPTTY 121 (353)
T ss_dssp HHHHHHHHHHHH--HHC---CEEEEEECSS
T ss_pred cHHHHHHHHHHh--ccC---CCEEEEeCCc
Confidence 3455555443 222 3455565544
No 219
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=51.47 E-value=23 Score=32.89 Aligned_cols=81 Identities=9% Similarity=0.009 Sum_probs=54.6
Q ss_pred EEEEEEE--cCCCCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCC-ceEEEEecC-hhhHHHHHH
Q 006567 166 AVSVIFV--DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALME-SRVIVLHVS-PSLGFQVFS 241 (640)
Q Consensus 166 ~v~ii~~--~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~vivl~~~-~~~~~~il~ 241 (640)
+|+++.. ++.|.....+.+++.+++.|.++.....-. . .+.......++.+.+.+ +|.||+... .......++
T Consensus 2 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~-~--~~~~~~~~~i~~l~~~~~vdgii~~~~~~~~~~~~~~ 78 (276)
T 3ksm_A 2 KLLLVLKGDSNAYWRQVYLGAQKAADEAGVTLLHRSTKD-D--GDIAGQIQILSYHLSQAPPDALILAPNSAEDLTPSVA 78 (276)
T ss_dssp EEEEECSCSSSTHHHHHHHHHHHHHHHHTCEEEECCCSS-T--TCHHHHHHHHHHHHHHSCCSEEEECCSSTTTTHHHHH
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECCCC-C--CCHHHHHHHHHHHHHhCCCCEEEEeCCCHHHHHHHHH
Confidence 5677764 355667778889999999998877542111 1 23444556777887778 999998753 345566778
Q ss_pred HHHHcCCc
Q 006567 242 VAKYLGMM 249 (640)
Q Consensus 242 ~a~~~gl~ 249 (640)
.+.+.|++
T Consensus 79 ~~~~~~ip 86 (276)
T 3ksm_A 79 QYRARNIP 86 (276)
T ss_dssp HHHHTTCC
T ss_pred HHHHCCCc
Confidence 88877653
No 220
>2oho_A Glutamate racemase; isomerase; 2.25A {Streptococcus pyogenes m1 gas} PDB: 2ohg_A 2ohv_A*
Probab=51.44 E-value=41 Score=31.50 Aligned_cols=38 Identities=16% Similarity=0.163 Sum_probs=24.4
Q ss_pred HHHHhHhcCcEEEEcCCChHHHHHHHHhhccCCceEEe
Q 006567 88 EALRFMETDIVAIIGPQCSTVAHIVSYVSNELQVPLLS 125 (640)
Q Consensus 88 ~a~~l~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is 125 (640)
.+..+.++|+.+|+-+=++.++..+..+-+..++|+|.
T Consensus 66 ~~~~L~~~g~d~iviaCNTas~~~l~~lr~~~~iPvig 103 (273)
T 2oho_A 66 LVNFLLTQNVKMIVFACNTATAVAWEEVKAALDIPVLG 103 (273)
T ss_dssp HHHHHHTTTCSEEEECCHHHHHHHHHHHHHHCSSCEEE
T ss_pred HHHHHHHCCCCEEEEeCchHhHHHHHHHHHhCCCCEEe
Confidence 33344455999888744444434456666777899996
No 221
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=51.18 E-value=26 Score=32.86 Aligned_cols=82 Identities=7% Similarity=-0.014 Sum_probs=53.8
Q ss_pred cCCcEEEEEEEc-------CCCCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecChh
Q 006567 162 YGWNAVSVIFVD-------NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPS 234 (640)
Q Consensus 162 ~~w~~v~ii~~~-------~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~ 234 (640)
-+-++|+++..+ +.|.....+.+++.+++.|..+... ... .+.......++.+...+.|.||+.....
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~---~~~--~~~~~~~~~~~~~~~~~vdgiIi~~~~~ 80 (292)
T 3k4h_A 6 QTTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVEGYALYMS---TGE--TEEEIFNGVVKMVQGRQIGGIILLYSRE 80 (292)
T ss_dssp -CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHTTCEEEEC---CCC--SHHHHHHHHHHHHHTTCCCEEEESCCBT
T ss_pred CCCCEEEEEecCCccccccCHHHHHHHHHHHHHHHHcCCEEEEE---eCC--CCHHHHHHHHHHHHcCCCCEEEEeCCCC
Confidence 344678888755 4566677888889999999887642 211 2234456677788888999999875432
Q ss_pred hHHHHHHHHHHcCCc
Q 006567 235 LGFQVFSVAKYLGMM 249 (640)
Q Consensus 235 ~~~~il~~a~~~gl~ 249 (640)
. ...++.+.+.|++
T Consensus 81 ~-~~~~~~l~~~~iP 94 (292)
T 3k4h_A 81 N-DRIIQYLHEQNFP 94 (292)
T ss_dssp T-CHHHHHHHHTTCC
T ss_pred C-hHHHHHHHHCCCC
Confidence 2 2466777776653
No 222
>3s81_A Putative aspartate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta fold, cytosol; 1.80A {Salmonella enterica subsp} PDB: 3s7z_A
Probab=51.11 E-value=22 Score=33.28 Aligned_cols=40 Identities=10% Similarity=0.018 Sum_probs=27.0
Q ss_pred HHHHHHhHhcCcEEEEcCCChHHHHHHHHhhccCCceEEec
Q 006567 86 MVEALRFMETDIVAIIGPQCSTVAHIVSYVSNELQVPLLSF 126 (640)
Q Consensus 86 ~~~a~~l~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~ 126 (640)
.+.+..|.+.|+.+|+-+-++... .+..+-+..++|+|..
T Consensus 89 ~~~~~~L~~~Gad~IVIaCNTah~-~l~~lr~~~~iPvigi 128 (268)
T 3s81_A 89 ERYLHMLEDAGAECIVIPCNTAHY-WFDDLQNVAKARMISI 128 (268)
T ss_dssp HHHHHHHHHTTCSEEECSCSGGGG-GHHHHHHHCSSEEECH
T ss_pred HHHHHHHHHcCCCEEEEeCCCHHH-HHHHHHHHCCCCEEcc
Confidence 344555556799999986666544 4555666778999963
No 223
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}
Probab=50.76 E-value=66 Score=29.53 Aligned_cols=94 Identities=10% Similarity=-0.007 Sum_probs=66.6
Q ss_pred HHHHHHHHHhcCCcEEEEEEEc------------CCCCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHH
Q 006567 152 MTAVAEMVSYYGWNAVSVIFVD------------NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKV 219 (640)
Q Consensus 152 ~~al~~ll~~~~w~~v~ii~~~------------~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l 219 (640)
....++.++..|.+.|=+...+ ........+.+++.+++.|+.+........ .....+...++..
T Consensus 24 ~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~---~~~~~~~~~i~~A 100 (262)
T 3p6l_A 24 LTEALDKTQELGLKYIEIYPGHKLGGKWGDKVFDFNLDAQTQKEIKELAASKGIKIVGTGVYVA---EKSSDWEKMFKFA 100 (262)
T ss_dssp HHHHHHHHHHTTCCEEEECTTEECCGGGTTCEESTTCCHHHHHHHHHHHHHTTCEEEEEEEECC---SSTTHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEeecCCcccccccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccCC---ccHHHHHHHHHHH
Confidence 3566777888899988875422 112233478899999999998875543321 2356788888888
Q ss_pred hcCCceEEEEecChhhHHHHHHHHHHcCC
Q 006567 220 ALMESRVIVLHVSPSLGFQVFSVAKYLGM 248 (640)
Q Consensus 220 ~~~~~~vivl~~~~~~~~~il~~a~~~gl 248 (640)
+..+++.|++....+....+.+.|++.|+
T Consensus 101 ~~lGa~~v~~~~~~~~~~~l~~~a~~~gv 129 (262)
T 3p6l_A 101 KAMDLEFITCEPALSDWDLVEKLSKQYNI 129 (262)
T ss_dssp HHTTCSEEEECCCGGGHHHHHHHHHHHTC
T ss_pred HHcCCCEEEecCCHHHHHHHHHHHHHhCC
Confidence 88999999988766667777777777664
No 224
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=50.50 E-value=19 Score=33.37 Aligned_cols=80 Identities=10% Similarity=0.010 Sum_probs=54.2
Q ss_pred cEEEEEEEc--CCCCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecChhhHHHHHHH
Q 006567 165 NAVSVIFVD--NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSV 242 (640)
Q Consensus 165 ~~v~ii~~~--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~il~~ 242 (640)
++|+++..+ +.|.....+.+++.+++.|..+..... . .+.......++.+...+.|.||+..........++.
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~----~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~ 77 (272)
T 3o74_A 3 RTLGFILPDLENPSYARIAKQLEQGARARGYQLLIASS-D----DQPDSERQLQQLFRARRCDALFVASCLPPEDDSYRE 77 (272)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEEC-T----TCHHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHH
T ss_pred eEEEEEeCCCcChhHHHHHHHHHHHHHHCCCEEEEEeC-C----CCHHHHHHHHHHHHHcCCCEEEEecCccccHHHHHH
Confidence 467888754 456667788899999999988775432 1 224455677888888899999887543223456667
Q ss_pred HHHcCCc
Q 006567 243 AKYLGMM 249 (640)
Q Consensus 243 a~~~gl~ 249 (640)
+.+.|++
T Consensus 78 ~~~~~iP 84 (272)
T 3o74_A 78 LQDKGLP 84 (272)
T ss_dssp HHHTTCC
T ss_pred HHHcCCC
Confidence 7776653
No 225
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=50.40 E-value=52 Score=31.12 Aligned_cols=70 Identities=14% Similarity=0.196 Sum_probs=48.5
Q ss_pred eeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHhhHHHHHHcCcccEEEeeeeeeccccceEEeCccccccceEEEEec
Q 006567 492 GFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDITIVTNRTKIVDFSQPYAASGLVVVVPF 571 (640)
Q Consensus 492 G~~~dl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~~~~~~~~t~~R~~~vdfs~p~~~~~~~il~~~ 571 (640)
.+..+++..+.++.. ++++++.. ++...++..|.+|++|+++....... ..+. +.++....+.+++++
T Consensus 103 ~~l~~~l~~f~~~~P-~v~i~l~~-------~~~~~~~~~l~~g~~Dlai~~~~~~~---~~l~-~~~L~~~~~~~v~~~ 170 (312)
T 2h9b_A 103 GLLPRIIHLYRQAHP-NLRIELYE-------MGTKAQTEALKEGRIDAGFGRLKISD---PAIK-HSLLRNERLMVAVHA 170 (312)
T ss_dssp TTHHHHHHHHHHTCT-TCEEEEEE-------CCHHHHHHHHHTTSCSEEEESSCCCC---TTEE-EEEEEEEEEEEEEET
T ss_pred hhHHHHHHHHHHHCC-CcEEEEEe-------CCHHHHHHHHHcCCCCEEEEeCCCCC---CCce-EEEeecceEEEEEcC
Confidence 456678888888774 33466665 56889999999999999986433221 1222 357777888888876
Q ss_pred CC
Q 006567 572 RK 573 (640)
Q Consensus 572 ~~ 573 (640)
..
T Consensus 171 ~h 172 (312)
T 2h9b_A 171 SH 172 (312)
T ss_dssp TS
T ss_pred CC
Confidence 53
No 226
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=50.09 E-value=38 Score=31.63 Aligned_cols=79 Identities=8% Similarity=0.041 Sum_probs=52.1
Q ss_pred cEEEEEEEc--CCCCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecC-hhhHHHHHH
Q 006567 165 NAVSVIFVD--NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVS-PSLGFQVFS 241 (640)
Q Consensus 165 ~~v~ii~~~--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~-~~~~~~il~ 241 (640)
++|+++..+ +.|.....+.+++.+++.|..+..... . .+.......++.+...++|.||+... .......++
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~ 77 (290)
T 2fn9_A 3 GKMAIVISTLNNPWFVVLAETAKQRAEQLGYEATIFDS---Q--NDTAKESAHFDAIIAAGYDAIIFNPTDADGSIANVK 77 (290)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHTTCEEEEEEC---T--TCHHHHHHHHHHHHHTTCSEEEECCSCTTTTHHHHH
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEeCC---C--CCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHH
Confidence 367888753 556667788888899999988764321 1 22344456677777788999888743 333345667
Q ss_pred HHHHcCC
Q 006567 242 VAKYLGM 248 (640)
Q Consensus 242 ~a~~~gl 248 (640)
.+.+.|.
T Consensus 78 ~~~~~~i 84 (290)
T 2fn9_A 78 RAKEAGI 84 (290)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 7776664
No 227
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=49.40 E-value=21 Score=33.97 Aligned_cols=88 Identities=9% Similarity=0.010 Sum_probs=54.1
Q ss_pred HHHHHhcCCcEEEEEEEc-------CCCCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEE
Q 006567 156 AEMVSYYGWNAVSVIFVD-------NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIV 228 (640)
Q Consensus 156 ~~ll~~~~w~~v~ii~~~-------~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv 228 (640)
+.-|+...-+.|+++..+ +.|.....+.+++.+++.|..+.... .. .+.......++.+...+.|.||
T Consensus 14 Ar~L~~~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~---~~--~~~~~~~~~~~~l~~~~vdgiI 88 (305)
T 3huu_A 14 ARTLITNKTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVRGYSTRMTV---SE--NSGDLYHEVKTMIQSKSVDGFI 88 (305)
T ss_dssp -------CCCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHHTCEEEECC---CS--SHHHHHHHHHHHHHTTCCSEEE
T ss_pred HHHhhhCCCCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHCCCEEEEEe---CC--CChHHHHHHHHHHHhCCCCEEE
Confidence 334444556789988765 34666677888889999998876432 11 1233446677888888999999
Q ss_pred EecChhhHHHHHHHHHHcCCc
Q 006567 229 LHVSPSLGFQVFSVAKYLGMM 249 (640)
Q Consensus 229 l~~~~~~~~~il~~a~~~gl~ 249 (640)
+...... ...++.+.+.|++
T Consensus 89 i~~~~~~-~~~~~~l~~~~iP 108 (305)
T 3huu_A 89 LLYSLKD-DPIEHLLNEFKVP 108 (305)
T ss_dssp ESSCBTT-CHHHHHHHHTTCC
T ss_pred EeCCcCC-cHHHHHHHHcCCC
Confidence 8754322 2456667776653
No 228
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=49.26 E-value=50 Score=30.81 Aligned_cols=84 Identities=5% Similarity=-0.079 Sum_probs=50.8
Q ss_pred HHhcCCcEEEEEEEc----CCCCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecChh
Q 006567 159 VSYYGWNAVSVIFVD----NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPS 234 (640)
Q Consensus 159 l~~~~w~~v~ii~~~----~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~ 234 (640)
|+.-.-.+|+++..+ +.|.....+.+++.+++.|..+.... .. .+.......++.+...+.+.||+.....
T Consensus 14 L~~~~~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~---~~--~~~~~~~~~~~~l~~~~vdgii~~~~~~ 88 (296)
T 3brq_A 14 LSAKSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLAD---GK--HSAEEERQAIQYLLDLRCDAIMIYPRFL 88 (296)
T ss_dssp -----CCEEEEEECGGGCC--CHHHHHHHHHHHHHHTTCEEEEEC---CT--TSHHHHHHHHHHHHHTTCSEEEEECSSS
T ss_pred hhcCCCceEEEEeCCcccCCchHHHHHHHHHHHHHHCCCEEEEEe---CC--CCHHHHHHHHHHHHhcCCCEEEEecCCC
Confidence 444444678888754 35666778888889999998876432 11 2244455677788788899988875432
Q ss_pred hHHHHHHHHHH-cCC
Q 006567 235 LGFQVFSVAKY-LGM 248 (640)
Q Consensus 235 ~~~~il~~a~~-~gl 248 (640)
. ...++.+.+ .|.
T Consensus 89 ~-~~~~~~l~~~~~i 102 (296)
T 3brq_A 89 S-VDEIDDIIDAHSQ 102 (296)
T ss_dssp C-HHHHHHHHHTCSS
T ss_pred C-hHHHHHHHhcCCC
Confidence 2 234556666 554
No 229
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=49.22 E-value=91 Score=25.47 Aligned_cols=85 Identities=5% Similarity=0.010 Sum_probs=54.4
Q ss_pred EEEEEEEcCCCCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecChh----hHHHHHH
Q 006567 166 AVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPS----LGFQVFS 241 (640)
Q Consensus 166 ~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~----~~~~il~ 241 (640)
++.+.....+...-+..-+...++..|+++.+-.... .....++..++.++++|.+.+... ....+++
T Consensus 5 ~vvla~~~~d~HdiG~~~v~~~l~~~G~~Vi~lG~~~--------p~e~~v~~a~~~~~d~v~lS~~~~~~~~~~~~~i~ 76 (137)
T 1ccw_A 5 TIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVLS--------PQELFIKAAIETKADAILVSSLYGQGEIDCKGLRQ 76 (137)
T ss_dssp EEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEEE--------CHHHHHHHHHHHTCSEEEEEECSSTHHHHHTTHHH
T ss_pred EEEEEeCCCchhHHHHHHHHHHHHHCCCEEEECCCCC--------CHHHHHHHHHhcCCCEEEEEecCcCcHHHHHHHHH
Confidence 4555444555666677778888999999988544321 133456666667899999875432 2445677
Q ss_pred HHHHcCCccCCeEEEEeC
Q 006567 242 VAKYLGMMGNGYVWIATD 259 (640)
Q Consensus 242 ~a~~~gl~~~~~~~i~~~ 259 (640)
+.++.|+. .-.+|++..
T Consensus 77 ~l~~~g~~-~i~v~vGG~ 93 (137)
T 1ccw_A 77 KCDEAGLE-GILLYVGGN 93 (137)
T ss_dssp HHHHTTCT-TCEEEEEES
T ss_pred HHHhcCCC-CCEEEEECC
Confidence 77777754 245666653
No 230
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=49.12 E-value=1.2e+02 Score=25.58 Aligned_cols=85 Identities=13% Similarity=0.060 Sum_probs=57.0
Q ss_pred cEEEEEEEcCCCCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecCh----hhHHHHH
Q 006567 165 NAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP----SLGFQVF 240 (640)
Q Consensus 165 ~~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~----~~~~~il 240 (640)
.+|.+.....+...-+..-+...++..|++|.+-... ......+..+++.++++|.+.+.. ..+..++
T Consensus 19 ~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~--------~p~e~lv~aa~~~~~diV~lS~~~~~~~~~~~~~i 90 (161)
T 2yxb_A 19 YKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLR--------QTPEQVAMAAVQEDVDVIGVSILNGAHLHLMKRLM 90 (161)
T ss_dssp CEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSB--------CCHHHHHHHHHHTTCSEEEEEESSSCHHHHHHHHH
T ss_pred CEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCC--------CCHHHHHHHHHhcCCCEEEEEeechhhHHHHHHHH
Confidence 4565555555666667788888899999988743211 223456677777899999997643 4566778
Q ss_pred HHHHHcCCccCCeEEEEe
Q 006567 241 SVAKYLGMMGNGYVWIAT 258 (640)
Q Consensus 241 ~~a~~~gl~~~~~~~i~~ 258 (640)
+++++.|.. .-.+|++.
T Consensus 91 ~~L~~~g~~-~i~v~vGG 107 (161)
T 2yxb_A 91 AKLRELGAD-DIPVVLGG 107 (161)
T ss_dssp HHHHHTTCT-TSCEEEEE
T ss_pred HHHHhcCCC-CCEEEEeC
Confidence 888887753 24466665
No 231
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=48.93 E-value=33 Score=32.43 Aligned_cols=88 Identities=10% Similarity=-0.017 Sum_probs=53.0
Q ss_pred HHHHHhcCCcEEEEEEEc--CCCCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecCh
Q 006567 156 AEMVSYYGWNAVSVIFVD--NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP 233 (640)
Q Consensus 156 ~~ll~~~~w~~v~ii~~~--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~ 233 (640)
+.-|+..+-+.|+++..+ +.|.....+.+++.+++.|..+.....- .+.......++.+...+.|.||+....
T Consensus 7 Ar~L~~~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-----~~~~~~~~~~~~l~~~~vdgiI~~~~~ 81 (303)
T 3kke_A 7 ARALRHSRSGTIGLIVPDVNNAVFADMFSGVQMAASGHSTDVLLGQID-----APPRGTQQLSRLVSEGRVDGVLLQRRE 81 (303)
T ss_dssp ----------CEEEEESCTTSTTHHHHHHHHHHHHHHTTCCEEEEECC-----STTHHHHHHHHHHHSCSSSEEEECCCT
T ss_pred HHHHhhCCCCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEEeCC-----CChHHHHHHHHHHHhCCCcEEEEecCC
Confidence 333444444678888753 5577778889999999999887654321 124445677888888999999987543
Q ss_pred hhHHHHHHHHHHcCCc
Q 006567 234 SLGFQVFSVAKYLGMM 249 (640)
Q Consensus 234 ~~~~~il~~a~~~gl~ 249 (640)
......++.+.+ |++
T Consensus 82 ~~~~~~~~~l~~-~iP 96 (303)
T 3kke_A 82 DFDDDMLAAVLE-GVP 96 (303)
T ss_dssp TCCHHHHHHHHT-TSC
T ss_pred CCcHHHHHHHhC-CCC
Confidence 332225566666 653
No 232
>2jfq_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: DGL; 2.15A {Staphylococcus aureus}
Probab=48.17 E-value=87 Score=29.48 Aligned_cols=40 Identities=20% Similarity=0.308 Sum_probs=25.1
Q ss_pred HHHHHhHhcCcEEEEcCCChHHHHHHHHhhccCCceEEec
Q 006567 87 VEALRFMETDIVAIIGPQCSTVAHIVSYVSNELQVPLLSF 126 (640)
Q Consensus 87 ~~a~~l~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~ 126 (640)
+.+..+.+.|+.+|+-+=++..+..+..+-+..++|+|..
T Consensus 75 ~~~~~L~~~g~d~IVIaCNTas~~~l~~lr~~~~iPVigi 114 (286)
T 2jfq_A 75 EIARKLMEFDIKMLVIACNTATAVALEYLQKTLSISVIGV 114 (286)
T ss_dssp HHHHHHTTSCCSEEEECCHHHHHHHHHHHHHHCSSEEEES
T ss_pred HHHHHHHHCCCCEEEEeCCchhHHHHHHHHHhCCCCEEec
Confidence 3344444558998887444444334566666779999973
No 233
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=48.07 E-value=35 Score=32.43 Aligned_cols=79 Identities=10% Similarity=0.045 Sum_probs=50.2
Q ss_pred EEEEEEEcCC-CCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEec-ChhhHHHHHHHH
Q 006567 166 AVSVIFVDNE-YGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHV-SPSLGFQVFSVA 243 (640)
Q Consensus 166 ~v~ii~~~~~-~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~-~~~~~~~il~~a 243 (640)
+|+++..+.. |.....+.+++.+++.|+.+.....- . .+.......++.+...++|.||+.. +.......++.+
T Consensus 3 ~Ig~i~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~--~--~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 78 (313)
T 2h3h_A 3 TIGVIGKSVHPYWSQVEQGVKAAGKALGVDTKFFVPQ--K--EDINAQLQMLESFIAEGVNGIAIAPSDPTAVIPTIKKA 78 (313)
T ss_dssp EEEEECSCSSHHHHHHHHHHHHHHHHHTCEEEEECCS--S--SCHHHHHHHHHHHHHTTCSEEEECCSSTTTTHHHHHHH
T ss_pred EEEEEeCCCcHHHHHHHHHHHHHHHHcCCEEEEECCC--C--CCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHH
Confidence 5667664311 66667778888888889887653211 1 2244455677777778899888864 333344567777
Q ss_pred HHcCC
Q 006567 244 KYLGM 248 (640)
Q Consensus 244 ~~~gl 248 (640)
.+.|.
T Consensus 79 ~~~~i 83 (313)
T 2h3h_A 79 LEMGI 83 (313)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 77664
No 234
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=48.00 E-value=49 Score=28.91 Aligned_cols=63 Identities=11% Similarity=0.085 Sum_probs=45.1
Q ss_pred cEEEEEEEcCCC----CcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEec
Q 006567 165 NAVSVIFVDNEY----GRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHV 231 (640)
Q Consensus 165 ~~v~ii~~~~~~----g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~ 231 (640)
-+++||...|+- -......+.+.+++.|..+.....++.+ ...+...+++..+.++|+||..+
T Consensus 31 ~rvaIistGdEl~~G~~Dsn~~~L~~~L~~~G~~v~~~~iv~Dd----~~~I~~al~~a~~~~~DlVIttG 97 (185)
T 3rfq_A 31 GRALVVVVDDRTAHGDEDHSGPLVTELLTEAGFVVDGVVAVEAD----EVDIRNALNTAVIGGVDLVVSVG 97 (185)
T ss_dssp EEEEEEEECHHHHTTCCCSHHHHHHHHHHHTTEEEEEEEEECSC----HHHHHHHHHHHHHTTCSEEEEES
T ss_pred CEEEEEEECcccCCCCcCcHHHHHHHHHHHCCCEEEEEEEeCCC----HHHHHHHHHHHHhCCCCEEEECC
Confidence 468888764431 2344567888899999998877767644 67788888877656789998874
No 235
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=47.98 E-value=69 Score=27.38 Aligned_cols=65 Identities=6% Similarity=0.048 Sum_probs=46.7
Q ss_pred CCcEEEEEEEcCCCCc---ccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhc-CCceEEEEec
Q 006567 163 GWNAVSVIFVDNEYGR---NGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVAL-MESRVIVLHV 231 (640)
Q Consensus 163 ~w~~v~ii~~~~~~g~---~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~vivl~~ 231 (640)
.--+++||...|+-|+ .....+.+.+++.|..+.....++.+ ...+...+++..+ .++|+||..+
T Consensus 12 ~~~rv~Ii~tGdElg~i~Dsn~~~l~~~L~~~G~~v~~~~iv~Dd----~~~i~~~l~~~~~~~~~DlVittG 80 (169)
T 1y5e_A 12 KEVRCKIVTISDTRTEETDKSGQLLHELLKEAGHKVTSYEIVKDD----KESIQQAVLAGYHKEDVDVVLTNG 80 (169)
T ss_dssp CCCEEEEEEECSSCCTTTCHHHHHHHHHHHHHTCEEEEEEEECSS----HHHHHHHHHHHHTCTTCSEEEEEC
T ss_pred cCCEEEEEEEcCccCeeccChHHHHHHHHHHCCCeEeEEEEeCCC----HHHHHHHHHHHHhcCCCCEEEEcC
Confidence 3458999887666542 23457788888889988877666644 6778888888765 3689998874
No 236
>2hxr_A HTH-type transcriptional regulator CYNR; CYNR transcriptional regulator LYSR struc genomics, PSI-2, protein structure initiative; 2.05A {Escherichia coli} PDB: 3hfu_A
Probab=47.82 E-value=64 Score=28.70 Aligned_cols=83 Identities=16% Similarity=0.193 Sum_probs=55.6
Q ss_pred CeEEEEeecCCCccceEEeecCCcceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHhhHHHHHHcCcccEEEeee
Q 006567 465 KLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDI 544 (640)
Q Consensus 465 ~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~~~~~~ 544 (640)
++|+|++... -...+...++..+.++.. .+++++.. .+...++..|.+|++|+++...
T Consensus 30 g~l~Ig~~~~--------------~~~~~l~~~l~~f~~~~P-~v~l~~~~-------~~~~~~~~~l~~g~~Dl~i~~~ 87 (238)
T 2hxr_A 30 GSLRIAVTPT--------------FTSYFIGPLMADFYARYP-SITLQLQE-------MSQEKIEDMLCRDELDVGIAFA 87 (238)
T ss_dssp -CEEEEECHH--------------HHTTTHHHHHHHHHHHCT-TSCEEEEE-------CCHHHHHHHHHTTSCSEEEEES
T ss_pred CeEEEeechh--------------hHHHHHHHHHHHHHHhCC-CcEEEEEE-------CCHHHHHHHHHcCCCcEEEEcC
Confidence 5688888521 122456678888888875 44477766 5688899999999999998643
Q ss_pred eeeccccceEEeCccccccceEEEEecCC
Q 006567 545 TIVTNRTKIVDFSQPYAASGLVVVVPFRK 573 (640)
Q Consensus 545 ~~t~~R~~~vdfs~p~~~~~~~il~~~~~ 573 (640)
... ...+. +.++....+.+++++..
T Consensus 88 ~~~---~~~l~-~~~l~~~~~~~v~~~~h 112 (238)
T 2hxr_A 88 PVH---SPELE-AIPLLTESLALVVAQHH 112 (238)
T ss_dssp SCC---CTTEE-EEEEEEEEEEEEEETTS
T ss_pred CCC---cccce-eeeeccCcEEEEEcCCC
Confidence 221 22232 35778888888887654
No 237
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=47.36 E-value=45 Score=32.44 Aligned_cols=85 Identities=11% Similarity=0.024 Sum_probs=53.4
Q ss_pred HHhcCCcEEEEEEEc--CCCCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecChhhH
Q 006567 159 VSYYGWNAVSVIFVD--NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLG 236 (640)
Q Consensus 159 l~~~~w~~v~ii~~~--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~ 236 (640)
|+...-+.|+++..+ +.|.......+++.+++.|..+..... . .+.......++.+...+.|.||+......
T Consensus 65 l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~----~~~~~~~~~~~~l~~~~vdGiI~~~~~~~- 138 (355)
T 3e3m_A 65 LTTKRSGFVGLLLPSLNNLHFAQTAQSLTDVLEQGGLQLLLGYT-A----YSPEREEQLVETMLRRRPEAMVLSYDGHT- 138 (355)
T ss_dssp ------CEEEEEESCSBCHHHHHHHHHHHHHHHHTTCEEEEEEC-T----TCHHHHHHHHHHHHHTCCSEEEEECSCCC-
T ss_pred hhcCCCCEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeC-C----CChHHHHHHHHHHHhCCCCEEEEeCCCCC-
Confidence 444444678888753 445566778888999999988765432 1 12444566778888889999988754332
Q ss_pred HHHHHHHHHcCCc
Q 006567 237 FQVFSVAKYLGMM 249 (640)
Q Consensus 237 ~~il~~a~~~gl~ 249 (640)
...++.+.+.|++
T Consensus 139 ~~~~~~l~~~~iP 151 (355)
T 3e3m_A 139 EQTIRLLQRASIP 151 (355)
T ss_dssp HHHHHHHHHCCSC
T ss_pred HHHHHHHHhCCCC
Confidence 2456667776653
No 238
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=46.93 E-value=21 Score=35.20 Aligned_cols=97 Identities=18% Similarity=0.125 Sum_probs=61.6
Q ss_pred HHHHHHHHhcCCcEEEEEEEcCCCCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecC
Q 006567 153 TAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVS 232 (640)
Q Consensus 153 ~al~~ll~~~~w~~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~ 232 (640)
+.+.++++.++.+++.+|++....+ ..+.+.+.+++.++.+ + ..+.++ .+.+.....++.+++.++|.||-.+.
T Consensus 25 ~~l~~~l~~~g~~r~liVtd~~~~~--~~~~v~~~L~~~~~~~-f-~~v~~~--p~~~~v~~~~~~~~~~~~D~IIavGG 98 (358)
T 3jzd_A 25 SQVAAEVERLGAKRALVLCTPNQQA--EAERIADLLGPLSAGV-Y-AGAVMH--VPIESARDATARAREAGADCAVAVGG 98 (358)
T ss_dssp GGHHHHHHHTTCSCEEEECCGGGHH--HHHHHHHHHGGGEEEE-E-CCCCTT--CBHHHHHHHHHHHHHHTCSEEEEEES
T ss_pred HHHHHHHHHhCCCeEEEEeCCcHHH--HHHHHHHHhccCCEEE-e-cCCcCC--CCHHHHHHHHHHhhccCCCEEEEeCC
Confidence 4467788889999999998654332 4677888887664432 2 223322 44667888888888889998887744
Q ss_pred --hhhHHHHHHHHHHcCCccCCeEEEEeCc
Q 006567 233 --PSLGFQVFSVAKYLGMMGNGYVWIATDW 260 (640)
Q Consensus 233 --~~~~~~il~~a~~~gl~~~~~~~i~~~~ 260 (640)
.-|+..++... .+ ..++-|-|..
T Consensus 99 GsviD~aK~iA~~--~~---~p~i~IPTT~ 123 (358)
T 3jzd_A 99 GSTTGLGKAIALE--TG---MPIVAIPTTY 123 (358)
T ss_dssp HHHHHHHHHHHHH--HC---CCEEEEECSS
T ss_pred cHHHHHHHHHHhc--cC---CCEEEEeCCc
Confidence 34555555432 22 3456666553
No 239
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=46.88 E-value=58 Score=30.40 Aligned_cols=39 Identities=10% Similarity=0.185 Sum_probs=26.1
Q ss_pred HHHHHhHhcCcEEEEcCCChHHHHHHHHhhccCCceEEe
Q 006567 87 VEALRFMETDIVAIIGPQCSTVAHIVSYVSNELQVPLLS 125 (640)
Q Consensus 87 ~~a~~l~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is 125 (640)
+.+..|.+.|+.+|+-+-++.++.++..+-+..++|+|.
T Consensus 58 ~~~~~L~~~g~~~IVIACNTa~~~al~~lr~~~~iPvig 96 (269)
T 3ist_A 58 EMTNFLVDRGIKMLVIACNTATAAALYDIREKLDIPVIG 96 (269)
T ss_dssp HHHHHHHHTTCSEEEECCHHHHHHHHHHHHHHCSSCEEE
T ss_pred HHHHHHHHCCCCEEEEeCCCccHHHHHHHHHhcCCCEEe
Confidence 334445566999988754454444566677778999996
No 240
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=46.39 E-value=24 Score=28.36 Aligned_cols=35 Identities=14% Similarity=0.201 Sum_probs=23.2
Q ss_pred HHHHHHHHHhhhcccCCCCCCCccccchhhhHhHhhhhh
Q 006567 597 FVVVGIVVWILEHRINDEFRGPPKRQVITILWFSLSTLF 635 (640)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 635 (640)
+++.+.+++.+|+..+ ++...++.+++||+..++.
T Consensus 40 ~~~~a~~~~~~E~~~~----~~~~~~~~~a~y~~~~T~t 74 (122)
T 2ih3_C 40 LLAGSYLAVLAERGAP----GAQLITYPRALWWACETAT 74 (122)
T ss_dssp HHHHHHHHHHHHTTST----TCCCCSHHHHHHHHHHHHT
T ss_pred HHHHHHhhheeeecCC----CCccCccccchhheeeeee
Confidence 3455667777886443 2234578899999988764
No 241
>2x7q_A Ca3427, possible thiamine biosynthesis enzyme; unknown function; 2.00A {Candida albicans} PDB: 2x7p_A
Probab=46.36 E-value=15 Score=35.34 Aligned_cols=65 Identities=15% Similarity=0.233 Sum_probs=38.9
Q ss_pred HHHhCCCCccEEEEEcCCCCCCCCHh-hHHHHHHcCcccEEEeeee-eeccccceEE-e--Cccccccc--eEEEEecCC
Q 006567 501 AVNLLPYAVPYQFVAFGDGHKNPSYT-QLVDSITTGVFDAVVGDIT-IVTNRTKIVD-F--SQPYAASG--LVVVVPFRK 573 (640)
Q Consensus 501 i~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~D~~~~~~~-~t~~R~~~vd-f--s~p~~~~~--~~il~~~~~ 573 (640)
+.++.|++ +++... +... .++..|.+|++|+++++.+ +...|.+-.+ | -.++...+ ..+++++..
T Consensus 38 ~~~~~Gl~--V~~~~~------~~g~~~~~~al~~G~~D~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~~~~i~v~~ds 109 (321)
T 2x7q_A 38 YYKAHDLS--IEFVKV------PEGSGRLINLLNSNEVDIAIGLTEAFIADIAKGNENIHVLDTYVKSPLLWAVSTGSNR 109 (321)
T ss_dssp HHHHTTCC--EEEEEC------TTCHHHHHHHHHTTSCSEEEEEHHHHHHHHHTTCTTEEEEEEEECSCCEEEEEEESSC
T ss_pred cHHHCCce--EEEEEC------CCCHHHHHHHHHcCCccEEecCcHHHHHHHHCCCCcEEEEEEecCCCcceEEEECCCC
Confidence 45667888 455442 2233 4899999999999987664 3334433322 2 23454444 367777654
No 242
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=46.19 E-value=1e+02 Score=29.03 Aligned_cols=112 Identities=11% Similarity=0.008 Sum_probs=64.7
Q ss_pred EEEEEEeecCCccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcCcEEEEcCCChHHH--
Q 006567 32 VNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTVA-- 109 (640)
Q Consensus 32 i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aiiGp~~s~~~-- 109 (640)
=+||++...+...+.....+++.|+++. |.++......+ .....+++.++. .++.||+.+.+....
T Consensus 141 ~~I~~i~~~~~~~~~~r~~g~~~al~~~--------gi~~~~~~~~~---~~~~~~~~~~l~-~~~dai~~~~D~~a~g~ 208 (302)
T 2qh8_A 141 KSIGVVYNPGEANAVSLMELLKLSAAKH--------GIKLVEATALK---SADVQSATQAIA-EKSDVIYALIDNTVASA 208 (302)
T ss_dssp CEEEEEECTTCHHHHHHHHHHHHHHHHT--------TCEEEEEECSS---GGGHHHHHHHHG-GGCSEEEECSCHHHHTT
T ss_pred cEEEEEecCCCcchHHHHHHHHHHHHHc--------CCEEEEEecCC---hHHHHHHHHHHh-ccCCEEEECCcHhHHHH
Confidence 4788887654333445567777777663 44554443322 233344555555 478888887665432
Q ss_pred -HHHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHH
Q 006567 110 -HIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVS 160 (640)
Q Consensus 110 -~~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~ 160 (640)
.++...+...++|++++... .+.. +-+..+..+...+++..++++.
T Consensus 209 ~~~l~~~~~~~~i~vig~d~~--~~~~---~~Lttv~~~~~~~G~~Aa~~l~ 255 (302)
T 2qh8_A 209 IEGMIVAANQAKTPVFGAATS--YVER---GAIASLGFDYYQIGVQTADYVA 255 (302)
T ss_dssp HHHHHHHHHHTTCCEEESSHH--HHHT---TCSEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEECCHH--HHhC---CcEEEEeCCHHHHHHHHHHHHH
Confidence 23444444579999986421 1221 4445566777888888777643
No 243
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=46.08 E-value=73 Score=27.56 Aligned_cols=66 Identities=15% Similarity=0.075 Sum_probs=45.8
Q ss_pred cCCcEEEEEEEcCC----------CCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcC-CceEEEEe
Q 006567 162 YGWNAVSVIFVDNE----------YGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALM-ESRVIVLH 230 (640)
Q Consensus 162 ~~w~~v~ii~~~~~----------~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~vivl~ 230 (640)
+.--+++||...|+ .-......+.+.+++.|.++.....++.+ ...+...+++..+. ++|+||..
T Consensus 13 ~~~~rv~IittGde~~~~~~~~G~i~Dsn~~~L~~~l~~~G~~v~~~~iv~Dd----~~~I~~al~~a~~~~~~DlVitt 88 (178)
T 2pjk_A 13 PKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDD----KIKILKAFTDALSIDEVDVIIST 88 (178)
T ss_dssp CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSC----HHHHHHHHHHHHTCTTCCEEEEE
T ss_pred CCCCEEEEEEeCcccccccccCCeEeehHHHHHHHHHHHCCCEEEEEEEeCCC----HHHHHHHHHHHHhcCCCCEEEEC
Confidence 34457888876542 11334557788888999988876666644 67788888877654 58999887
Q ss_pred c
Q 006567 231 V 231 (640)
Q Consensus 231 ~ 231 (640)
+
T Consensus 89 G 89 (178)
T 2pjk_A 89 G 89 (178)
T ss_dssp S
T ss_pred C
Confidence 4
No 244
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=45.98 E-value=48 Score=31.08 Aligned_cols=84 Identities=14% Similarity=0.180 Sum_probs=55.2
Q ss_pred CCeEEEEeecCCCccceEEeecCCcceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHhhHHHHHHcCcccEEEee
Q 006567 464 GKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGD 543 (640)
Q Consensus 464 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~~~~~ 543 (640)
.++|+|++... -...+..+++..+.++.. ++++++.. ++...++..|.+|++|+++..
T Consensus 94 ~g~l~i~~~~~--------------~~~~~l~~~l~~f~~~~P-~i~i~l~~-------~~~~~~~~~l~~g~~Dl~i~~ 151 (306)
T 3fzv_A 94 AGQIDIGCFET--------------VAPLYLPGLIAGFRQAYP-GVEIRIRD-------GEQQELVQGLTSGRFDLAFLY 151 (306)
T ss_dssp CEEEEEEEEGG--------------GHHHHHHHHHHHHHHHCT-TEEEEEEE-------ECHHHHHHHHHHTSCSEEEEC
T ss_pred CceEEEEechh--------------hhHHHHHHHHHHHHHHCC-CeEEEEEe-------CCHHHHHHHHHCCCccEEEEe
Confidence 35789988621 122456678888888875 33466655 568899999999999999764
Q ss_pred eeeeccccceEEeCcccc-ccceEEEEecCC
Q 006567 544 ITIVTNRTKIVDFSQPYA-ASGLVVVVPFRK 573 (640)
Q Consensus 544 ~~~t~~R~~~vdfs~p~~-~~~~~il~~~~~ 573 (640)
-.. ....+. ..+.. ...+.+++++..
T Consensus 152 ~~~---~~~~l~-~~~l~~~~~~~~v~~~~~ 178 (306)
T 3fzv_A 152 EHD---LDSTIE-TEPLMPPQRPHALLPEGH 178 (306)
T ss_dssp SSS---CCTTEE-EEESSCCBCCEEEEETTC
T ss_pred ccc---cccccc-eeeeeeccccEEEecCCC
Confidence 322 222232 35666 677777877654
No 245
>3kn3_A Putative periplasmic protein; alpha-beta structure, periplasmic binding protein fold, STRU genomics, PSI-2, protein structure initiative; HET: GSH CIT; 2.41A {Wolinella succinogenes}
Probab=45.89 E-value=13 Score=34.13 Aligned_cols=74 Identities=9% Similarity=-0.118 Sum_probs=52.0
Q ss_pred eeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHhhHHHHHHcCcccEEEeeeeeecccc---ceEEeCccccccceEE
Q 006567 491 QGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDITIVTNRT---KIVDFSQPYAASGLVV 567 (640)
Q Consensus 491 ~G~~~dl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~~~~~~~~t~~R~---~~vdfs~p~~~~~~~i 567 (640)
+|+.-+|...+.++.|.++++.+ +....++.++.+|.+|+.+..-...++.. ....=..+|+...+++
T Consensus 18 s~ll~eL~~~Fek~~gv~V~~~~---------~gSg~ll~qi~~G~aDVfisa~~~~~~~l~~~G~~~~~~~~a~N~LVL 88 (242)
T 3kn3_A 18 TGLLDVLAPAYKKDTGVDLKWVA---------VGTGNALKLGENCDVDVVFVHAPKVELEYVEKGFGIDRTPVMYNDFVI 88 (242)
T ss_dssp HTHHHHHHHHHHHHHSCEEEEEE---------ECHHHHHHHHHTTCCSEEEECCHHHHHHHHHHTSEEEEEEEECSCEEE
T ss_pred chHHHHHHHHHHHHhCCeEEEEE---------cCcHHHHHHHhcCCCCEEEecChHhHHHHHhcCCCccceEEEcceEEE
Confidence 46667788888888898855555 45788999999999999976543333221 1111236888889999
Q ss_pred EEecCC
Q 006567 568 VVPFRK 573 (640)
Q Consensus 568 l~~~~~ 573 (640)
++|+.+
T Consensus 89 V~P~~~ 94 (242)
T 3kn3_A 89 IGNPSF 94 (242)
T ss_dssp EECTHH
T ss_pred EEeCCC
Confidence 988754
No 246
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=45.71 E-value=1.5e+02 Score=27.53 Aligned_cols=112 Identities=13% Similarity=0.082 Sum_probs=63.3
Q ss_pred EEEEEEeecCCccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcCcEEEEcCCChHHH--
Q 006567 32 VNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTVA-- 109 (640)
Q Consensus 32 i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aiiGp~~s~~~-- 109 (640)
=+||++...+...+.....+++.|+++. |.++......+ .....+++.++. .++.||+.+.+....
T Consensus 134 ~~I~~i~~~~~~~~~~r~~g~~~al~~~--------gi~~~~~~~~~---~~~~~~~~~~l~-~~~dai~~~~D~~a~g~ 201 (295)
T 3lft_A 134 KTIGALYSSSEDNSKTQVEEFKAYAEKA--------GLTVETFAVPS---TNEIASTVTVMT-SKVDAIWVPIDNTIASG 201 (295)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHT--------TCEEEEEEESS---GGGHHHHHHHHT-TTCSEEEECSCHHHHHT
T ss_pred cEEEEEeCCCCcchHHHHHHHHHHHHHc--------CCEEEEEecCC---HHHHHHHHHHHH-hcCCEEEECCchhHHHH
Confidence 4678887764332344567777777663 44444333222 223334444454 478888887665433
Q ss_pred -HHHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHH
Q 006567 110 -HIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVS 160 (640)
Q Consensus 110 -~~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~ 160 (640)
.++...+...++|++++... .+.. +.+.....+...+++..++++.
T Consensus 202 ~~~l~~~~~~~~i~vig~d~~--~~~~---~~Lttv~~~~~~~G~~Aa~~l~ 248 (295)
T 3lft_A 202 FPTVVSSNQSSKKPIYPSATA--MVEV---GGLASVVIDQHDLGVATGKMIV 248 (295)
T ss_dssp HHHHHHHTTTTCCCEEESSHH--HHTT---TCCEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEeCCHH--HHhc---CcEEEEecCHHHHHHHHHHHHH
Confidence 23444555678999986421 1221 3345556677788888777643
No 247
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=45.67 E-value=42 Score=32.39 Aligned_cols=82 Identities=9% Similarity=0.094 Sum_probs=50.0
Q ss_pred cEEEEEEEc---CCCCcccHHHHHHHHhhcCeEEEEeec-cCCCCCCChhHHHHHHHHHhcCCceEEEEecChhhHHHHH
Q 006567 165 NAVSVIFVD---NEYGRNGVSALNDKLAERRCRISYKSG-IPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVF 240 (640)
Q Consensus 165 ~~v~ii~~~---~~~g~~~~~~~~~~~~~~g~~v~~~~~-~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~il 240 (640)
.+|+++..+ +.|.......+++.+++.|..+..... .... .+...-...++.+...++|.||+..+.......+
T Consensus 44 ~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~--~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~ 121 (342)
T 1jx6_A 44 IKISVVYPGQQVSDYWVRNIASFEKRLYKLNINYQLNQVFTRPN--ADIKQQSLSLMEALKSKSDYLIFTLDTTRHRKFV 121 (342)
T ss_dssp EEEEEEECCCSSCCHHHHHHHHHHHHHHHTTCCEEEEEEECCTT--CCHHHHHHHHHHHHHTTCSEEEECCSSSTTHHHH
T ss_pred eEEEEEecCCcccHHHHHHHHHHHHHHHHcCCeEEEEecCCCCc--cCHHHHHHHHHHHHhcCCCEEEEeCChHhHHHHH
Confidence 467887754 456666777888888888976654321 1100 1233445667777778899988854433334556
Q ss_pred HHHHHcCC
Q 006567 241 SVAKYLGM 248 (640)
Q Consensus 241 ~~a~~~gl 248 (640)
+.+.+.|.
T Consensus 122 ~~~~~~~i 129 (342)
T 1jx6_A 122 EHVLDSTN 129 (342)
T ss_dssp HHHHHHCS
T ss_pred HHHHHcCC
Confidence 66666553
No 248
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=45.64 E-value=66 Score=27.35 Aligned_cols=62 Identities=16% Similarity=0.125 Sum_probs=44.2
Q ss_pred EEEEEEEcCC-----CCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcC-CceEEEEec
Q 006567 166 AVSVIFVDNE-----YGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALM-ESRVIVLHV 231 (640)
Q Consensus 166 ~v~ii~~~~~-----~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~vivl~~ 231 (640)
+++||...|+ .-......+.+.+++.|..+.....++.+ ...+...+++..+. ++|+||..+
T Consensus 3 ~v~Ii~tGdEl~~G~i~D~n~~~l~~~l~~~G~~v~~~~iv~Dd----~~~i~~~l~~~~~~~~~DlVittG 70 (164)
T 2is8_A 3 RVGILTVSDKGFRGERQDTTHLAIREVLAGGPFEVAAYELVPDE----PPMIKKVLRLWADREGLDLILTNG 70 (164)
T ss_dssp EEEEEEECHHHHHTSSCCCHHHHHHHHHTTSSEEEEEEEEECSC----HHHHHHHHHHHHHTSCCSEEEEES
T ss_pred EEEEEEEcCcccCCCcccchHHHHHHHHHHCCCeEeEEEEcCCC----HHHHHHHHHHHHhcCCCCEEEEcC
Confidence 5777765443 11234567888899999988877667644 77788888887764 689998874
No 249
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=44.87 E-value=71 Score=28.41 Aligned_cols=97 Identities=16% Similarity=0.040 Sum_probs=54.6
Q ss_pred HHHHHHHHHhcCCcEEEEEEE--cCCCCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEE
Q 006567 152 MTAVAEMVSYYGWNAVSVIFV--DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVL 229 (640)
Q Consensus 152 ~~al~~ll~~~~w~~v~ii~~--~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl 229 (640)
...+.+++....-+++++|-. ..+........+++.+++.|.++....... .+.+++.+.++ + +|.|++
T Consensus 15 ~~~~~~f~~~~~~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~----~~~~~~~~~l~---~--ad~I~l 85 (206)
T 3l4e_A 15 VPLFTEFESNLQGKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIAT----ESLGEITTKLR---K--NDFIYV 85 (206)
T ss_dssp HHHHHHHSCCCTTCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTT----SCHHHHHHHHH---H--SSEEEE
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC----CChHHHHHHHH---h--CCEEEE
Confidence 455555665566689998842 211223467889999999998766432111 12344444333 2 677888
Q ss_pred ecChhhHHHHHHHHHHcCCcc-------CCeEEEEeC
Q 006567 230 HVSPSLGFQVFSVAKYLGMMG-------NGYVWIATD 259 (640)
Q Consensus 230 ~~~~~~~~~il~~a~~~gl~~-------~~~~~i~~~ 259 (640)
.+ .+...+++..++.|+.. .+..++++.
T Consensus 86 ~G--G~~~~l~~~L~~~gl~~~l~~~~~~G~p~~G~s 120 (206)
T 3l4e_A 86 TG--GNTFFLLQELKRTGADKLILEEIAAGKLYIGES 120 (206)
T ss_dssp CC--SCHHHHHHHHHHHTHHHHHHHHHHTTCEEEEET
T ss_pred CC--CCHHHHHHHHHHCChHHHHHHHHHcCCeEEEEC
Confidence 65 33335555555555432 234666665
No 250
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=44.78 E-value=26 Score=29.67 Aligned_cols=35 Identities=14% Similarity=0.190 Sum_probs=23.0
Q ss_pred HHHHHHHHHhhhcccCCCCCCCccccchhhhHhHhhhhh
Q 006567 597 FVVVGIVVWILEHRINDEFRGPPKRQVITILWFSLSTLF 635 (640)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 635 (640)
+++.+++++.+|+..+. +...++.+++||++.++-
T Consensus 63 i~~~a~~~~~~E~~~~~----~~~~s~~~a~y~s~vTlt 97 (155)
T 2a9h_A 63 LLAGSYLAVLAERGAPG----AALISYPDALWWSVETAT 97 (155)
T ss_dssp HHHHHHHHHHHHTTSSC----SSTTSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccCCC----CccCcccceeheeeeeee
Confidence 34556667788875432 233468899999988764
No 251
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=44.75 E-value=47 Score=30.81 Aligned_cols=116 Identities=12% Similarity=0.074 Sum_probs=67.1
Q ss_pred EEEEEeecCCccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhc--CcEEEEcCCChHHHH
Q 006567 33 NVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMET--DIVAIIGPQCSTVAH 110 (640)
Q Consensus 33 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~--~v~aiiGp~~s~~~~ 110 (640)
+|+++...... ......|++.|+++.+ .++.........+...+.+.+.+++.. .+.||+...+. .+.
T Consensus 120 ~i~~i~~~~~~-~~~R~~gf~~~l~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~-~a~ 189 (280)
T 3gyb_A 120 HIAHLRVGSGA-GLRRFESFEATMRAHG--------LEPLSNDYLGPAVEHAGYTETLALLKEHPEVTAIFSSNDI-TAI 189 (280)
T ss_dssp SEEEECCSSHH-HHHHHHHHHHHHHHTT--------CCCEECCCCSCCCHHHHHHHHHHHHHHCTTCCEEEESSHH-HHH
T ss_pred eEEEEeCCCch-HHHHHHHHHHHHHHcC--------cCCCcccccCCCCHHHHHHHHHHHHhCCCCCCEEEECChH-HHH
Confidence 67777776544 5566788888887742 222222244556777777888888865 58899975443 333
Q ss_pred HHHHhhccC------CceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHH
Q 006567 111 IVSYVSNEL------QVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVS 160 (640)
Q Consensus 111 ~v~~~~~~~------~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~ 160 (640)
.+...+.+. ++.++++.... +.....|.+..+..+...+++..+++|.
T Consensus 190 g~~~al~~~g~~vP~di~vvg~d~~~--~~~~~~p~lttv~~~~~~~g~~av~~l~ 243 (280)
T 3gyb_A 190 GALGAARELGLRVPEDLSIIGYDNTP--LAQTRLINLTTIDDNSIGVGYNAALLLL 243 (280)
T ss_dssp HHHHHHHHHTCCTTTTCEEEEESCCH--HHHSTTTCCCEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCeeEEEEECCch--HhhccCCCceEEecCHHHHHHHHHHHHH
Confidence 333333333 34577654322 2222224445555667777777777544
No 252
>2h98_A HTH-type transcriptional regulator CATM; BENM, LTTR; 1.80A {Acinetobacter SP} PDB: 2h9q_A* 2f7b_A 2f7c_A* 3glb_A* 3m1e_A
Probab=44.57 E-value=70 Score=30.28 Aligned_cols=70 Identities=10% Similarity=0.184 Sum_probs=48.3
Q ss_pred eeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHhhHHHHHHcCcccEEEeeeeeeccccceEEeCccccccceEEEEec
Q 006567 492 GFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDITIVTNRTKIVDFSQPYAASGLVVVVPF 571 (640)
Q Consensus 492 G~~~dl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~~~~~~~~t~~R~~~vdfs~p~~~~~~~il~~~ 571 (640)
.+...++..+.++.. .+++++.. ++...++..|.+|++|+++....... ..+. ..++....+.+++++
T Consensus 103 ~~l~~~l~~f~~~~P-~v~l~l~~-------~~~~~~~~~l~~g~~Dlai~~~~~~~---~~l~-~~~L~~~~~~~v~~~ 170 (313)
T 2h98_A 103 GLLPEIIYLFRQQNP-EIHIELIE-------CGTKDQINALKQGKIDLGFGRLKITD---PAIR-RIMLHKEQLKLAIHK 170 (313)
T ss_dssp TTHHHHHHHHHHHCT-TSEEEEEE-------CCHHHHHHHHHHTSCSEEEESSCCCC---TTEE-EEEEEEEEEEEEEET
T ss_pred hHHHHHHHHHHHHCC-CeEEEEEe-------CChHHHHHHHHcCCCCEEEEeCCCCC---CCee-EEEeeeCcEEEEEcC
Confidence 456678888888874 33466665 56889999999999999986432221 2222 357777888888876
Q ss_pred CC
Q 006567 572 RK 573 (640)
Q Consensus 572 ~~ 573 (640)
..
T Consensus 171 ~h 172 (313)
T 2h98_A 171 HH 172 (313)
T ss_dssp TS
T ss_pred CC
Confidence 43
No 253
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=44.37 E-value=20 Score=33.27 Aligned_cols=88 Identities=13% Similarity=0.078 Sum_probs=52.1
Q ss_pred hHHHHHHHHHHH-----hcCCcEEEEEEEcCCCCcccHHHHHHHHhhcCeEEEEeeccCCCCC-CChhHHHHHHHHHhcC
Q 006567 149 SYQMTAVAEMVS-----YYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESG-VNTGYVMDLLVKVALM 222 (640)
Q Consensus 149 ~~~~~al~~ll~-----~~~w~~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~-~~~~~~~~~l~~l~~~ 222 (640)
...++.+++.+. ...-++|.++..+. ....+.+.+++.|..|.....|..... .....+ ...+...
T Consensus 113 ~~~~e~L~~~l~~~~~~~~~~~~vL~~rg~~-----~r~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~---~~~l~~~ 184 (254)
T 4es6_A 113 GDDSEALLALPAFQDSLRVHDPKVLIMRGEG-----GREFLAERLRGQGVQVDYLPLYRRRAPDYPAGEL---LARVRAE 184 (254)
T ss_dssp CCSHHHHHTCHHHHHHTCSSSCEEEEEECSS-----CCCHHHHHHHHTTCEEEEEECEEEECCCCCTTHH---HHHHHHT
T ss_pred CCCHHHHHHhHhhcccccCCCCEEEEEcCCc-----cHHHHHHHHHHCCCEEEEEeEEEeeCCCCCHHHH---HHHHHhC
Confidence 334677888664 34557887766433 345667888889988765554443210 122233 3334445
Q ss_pred CceEEEEecChhhHHHHHHHHHH
Q 006567 223 ESRVIVLHVSPSLGFQVFSVAKY 245 (640)
Q Consensus 223 ~~~vivl~~~~~~~~~il~~a~~ 245 (640)
..|+| ++.++..+..+++.+.+
T Consensus 185 ~~d~v-~ftS~s~v~~~~~~~~~ 206 (254)
T 4es6_A 185 RLNGL-VVSSGQGLQNLYQLAAA 206 (254)
T ss_dssp TCCEE-ECCSHHHHHHHHHHHGG
T ss_pred CCCEE-EEcCHHHHHHHHHHhhH
Confidence 56654 46778888888877643
No 254
>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...
Probab=43.29 E-value=1.2e+02 Score=28.01 Aligned_cols=84 Identities=12% Similarity=0.066 Sum_probs=57.9
Q ss_pred HHHHHHhcCCcEEEEEEEcCCCCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEec---
Q 006567 155 VAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHV--- 231 (640)
Q Consensus 155 l~~ll~~~~w~~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~--- 231 (640)
++++.. -|-.-+.++. |..|.....+.+++.-+.-.+.|-... +-.. .-++.+.+..++|.|+|.+
T Consensus 69 iA~~~~-~GA~aiSVLT-d~~~F~Gs~~~L~~vr~~v~lPvLrKD-Fiid--------~yQI~eAr~~GADaILLI~a~L 137 (258)
T 4a29_A 69 YAKFME-RYAVGLSITT-EEKYFNGSYETLRKIASSVSIPILMSD-FIVK--------ESQIDDAYNLGADTVLLIVKIL 137 (258)
T ss_dssp HHHHHT-TTCSEEEEEC-CSTTTCCCHHHHHHHHTTCSSCEEEES-CCCS--------HHHHHHHHHHTCSEEEEEGGGS
T ss_pred HHHHHh-CCCeEEEEeC-CCCCCCCCHHHHHHHHHhcCCCEeecc-cccc--------HHHHHHHHHcCCCeeehHHhhc
Confidence 445544 4667777665 666777888888777665566654433 2222 1256677788999999864
Q ss_pred ChhhHHHHHHHHHHcCCc
Q 006567 232 SPSLGFQVFSVAKYLGMM 249 (640)
Q Consensus 232 ~~~~~~~il~~a~~~gl~ 249 (640)
+..+...+.+.|.++||.
T Consensus 138 ~~~~l~~l~~~A~~lGl~ 155 (258)
T 4a29_A 138 TERELESLLEYARSYGME 155 (258)
T ss_dssp CHHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHHHhHH
Confidence 456788999999999986
No 255
>4exl_A PBP 1, phosphate-binding protein PSTS 1; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; 1.70A {Streptococcus pneumoniae}
Probab=43.26 E-value=46 Score=30.96 Aligned_cols=71 Identities=10% Similarity=0.065 Sum_probs=47.3
Q ss_pred eeHHHHHHHHHhC-CCCccEEEEEcCCCCCCCCHhhHHHHHHcCcccEEEeeeeeec-c--ccceEEeCccccccceEEE
Q 006567 493 FCIDVFTAAVNLL-PYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDITIVT-N--RTKIVDFSQPYAASGLVVV 568 (640)
Q Consensus 493 ~~~dl~~~i~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~~~~~~~~t~-~--R~~~vdfs~p~~~~~~~il 568 (640)
+.-.++..+.++. +.+ +.+.. +.....+.+|.+|++|+++....... + ....+ -..|+...+++++
T Consensus 17 ~~~~~~~~F~~~~P~v~--i~v~~-------~gS~~gi~~l~~g~~Dig~~~~~~~~~~~~~~~~l-~~~~ia~d~lvvv 86 (265)
T 4exl_A 17 LVEVAADEFGTIHVGKT--VNVQG-------GGSGTGLSQVQSGAVDIGNSDVFAEEKDGIDASAL-VDHKVAVAGLALI 86 (265)
T ss_dssp HHHHHHHHHHHHSTTCE--EEEEE-------ECHHHHHHHHHTTSSSEEEESSCGGGSTTCCGGGE-ECCEEEEEEEEEE
T ss_pred HHHHHHHHHHHHCCCce--EEEee-------CCcHHHHHHHHcCCCccccccCCcchhhcccccCc-eEeeEEEEEEEEE
Confidence 3445667777776 566 44444 45889999999999999986543322 1 11112 2588999999999
Q ss_pred EecCC
Q 006567 569 VPFRK 573 (640)
Q Consensus 569 ~~~~~ 573 (640)
+....
T Consensus 87 v~~~~ 91 (265)
T 4exl_A 87 VNKEV 91 (265)
T ss_dssp ECTTC
T ss_pred ECCCC
Confidence 97654
No 256
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=42.76 E-value=62 Score=30.40 Aligned_cols=79 Identities=9% Similarity=0.105 Sum_probs=51.9
Q ss_pred cEEEEEEE--cCCCCcccHHHHHHHHhhcCe-EEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecC-hhhHHHHH
Q 006567 165 NAVSVIFV--DNEYGRNGVSALNDKLAERRC-RISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVS-PSLGFQVF 240 (640)
Q Consensus 165 ~~v~ii~~--~~~~g~~~~~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~-~~~~~~il 240 (640)
++|+++.. ++.|.....+.+++.+++.|. .+..... . .+.......++.+...++|.||+... .......+
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~---~--~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~ 77 (309)
T 2fvy_A 3 TRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDS---Q--NDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVI 77 (309)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHTCTTEEEEEEEC---T--TCHHHHHHHHHHHHHTTCSEEEECCSSGGGHHHHH
T ss_pred cEEEEEeccCCcHHHHHHHHHHHHHHHhcCCeEEEEecC---C--CCHHHHHHHHHHHHHcCCCEEEEeCCCcchhHHHH
Confidence 46777774 345666777888888988996 7654321 1 12444556777777888998888753 33345667
Q ss_pred HHHHHcCC
Q 006567 241 SVAKYLGM 248 (640)
Q Consensus 241 ~~a~~~gl 248 (640)
+.+.+.|+
T Consensus 78 ~~~~~~~i 85 (309)
T 2fvy_A 78 EKARGQNV 85 (309)
T ss_dssp HHHHTTTC
T ss_pred HHHHHCCC
Confidence 77776664
No 257
>3onm_A Transcriptional regulator LRHA; LYSR, ROVM, transcription factor, virulence factor; 2.40A {Yersinia pseudotuberculosis}
Probab=42.40 E-value=56 Score=29.21 Aligned_cols=81 Identities=11% Similarity=0.106 Sum_probs=56.5
Q ss_pred CeEEEEeecCCCccceEEeecCCcceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHhhHHHHHHcCcccEEEeee
Q 006567 465 KLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDI 544 (640)
Q Consensus 465 ~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~~~~~~ 544 (640)
++|+|++... -...+..+++..+.++.. ++++++.. .....++..|.+|++|+++...
T Consensus 27 g~l~Ig~~~~--------------~~~~~l~~~l~~f~~~~P-~i~l~i~~-------~~~~~~~~~L~~g~~Dl~i~~~ 84 (238)
T 3onm_A 27 GSLIIGASDD--------------TADTLLPFLLNRVATLYP-RLAIDVRV-------KRSPFIADMLSSGEVDLAITTA 84 (238)
T ss_dssp CCEEEEECHH--------------HHTTHHHHHHHHHHHHCT-TCCEEEEE-------CCHHHHHHHHHHTSCSEEEECS
T ss_pred eeEEEeccch--------------hhHHHHHHHHHHHHHHCC-CcEEEEEE-------CCHHHHHHHHHCCCccEEEEec
Confidence 5789888521 122456678888888775 33466665 6689999999999999998643
Q ss_pred eeeccccceEEeCccccccceEEEEecCC
Q 006567 545 TIVTNRTKIVDFSQPYAASGLVVVVPFRK 573 (640)
Q Consensus 545 ~~t~~R~~~vdfs~p~~~~~~~il~~~~~ 573 (640)
.. . . + -+.++....+.+++++..
T Consensus 85 ~~--~--~-~-~~~~l~~~~~~~v~~~~~ 107 (238)
T 3onm_A 85 KV--D--S-H-PHVILRTSPTLWYCSVDY 107 (238)
T ss_dssp CC-----C-C-CEEEEEEECEEEEEETTC
T ss_pred CC--C--C-c-ceEEeecCCEEEEEcCCC
Confidence 31 1 1 1 247788888888887765
No 258
>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}
Probab=42.29 E-value=2e+02 Score=27.70 Aligned_cols=133 Identities=12% Similarity=0.095 Sum_probs=69.5
Q ss_pred EEEEEEeecCCccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcCcEEEEcCCChHHHHH
Q 006567 32 VNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTVAHI 111 (640)
Q Consensus 32 i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aiiGp~~s~~~~~ 111 (640)
-.|+.+|...+ ...+..|+.|+.++ +|..+.+...+++-.-.+.+.-..+.++.-+++|+-=.. ....
T Consensus 71 K~la~lF~epS---TRTR~SFE~A~~~L-------Gg~vi~l~~~~ss~~kgEsl~DTarvLs~y~D~IviR~~--~~~~ 138 (340)
T 4ep1_A 71 KILGLIFDKHS---TRTRVSFEAGMVQL-------GGHGMFLNGKEMQMGRGETVSDTAKVLSHYIDGIMIRTF--SHAD 138 (340)
T ss_dssp CEEEEEESSCC---HHHHHHHHHHHHHT-------TCEEEEEESCC------CCTTHHHHHHHHHCSEEEEECS--CHHH
T ss_pred ceEEEEecCCC---ccHHHHHHHHHHHc-------CCeEEEcCcccccCCCCCCHHHHHHHHHHhCCEEEEecC--ChhH
Confidence 35788887654 34588899998885 355554443333211111111111222221333332111 1233
Q ss_pred HHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHH---Hhc---CCcEEEEEEEcCCCCcccHHHHH
Q 006567 112 VSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMV---SYY---GWNAVSVIFVDNEYGRNGVSALN 185 (640)
Q Consensus 112 v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll---~~~---~w~~v~ii~~~~~~g~~~~~~~~ 185 (640)
+..++...++|+|.-+ + +...| .++++|++ +++ ...+|+++. |. ...+..+.
T Consensus 139 ~~~lA~~~~vPVINag--~----~~~HP------------tQaLaDl~TI~E~~G~l~glkva~vG--D~--~nva~Sl~ 196 (340)
T 4ep1_A 139 VEELAKESSIPVINGL--T----DDHHP------------CQALADLMTIYEETNTFKGIKLAYVG--DG--NNVCHSLL 196 (340)
T ss_dssp HHHHHHHCSSCEEEEE--C----SSCCH------------HHHHHHHHHHHHHHSCCTTCEEEEES--CC--CHHHHHHH
T ss_pred HHHHHHhCCCCEEeCC--C----CCCCc------------HHHHHHHHHHHHHhCCCCCCEEEEEC--CC--chhHHHHH
Confidence 4555666789999732 2 11233 37888864 233 346777764 32 34677777
Q ss_pred HHHhhcCeEEEEe
Q 006567 186 DKLAERRCRISYK 198 (640)
Q Consensus 186 ~~~~~~g~~v~~~ 198 (640)
..+...|.++...
T Consensus 197 ~~~~~~G~~v~~~ 209 (340)
T 4ep1_A 197 LASAKVGMHMTVA 209 (340)
T ss_dssp HHHHHHTCEEEEE
T ss_pred HHHHHcCCEEEEE
Confidence 7787788877654
No 259
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=42.06 E-value=56 Score=30.53 Aligned_cols=78 Identities=15% Similarity=0.059 Sum_probs=51.4
Q ss_pred cEEEEEEEc--CCCCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecChhhHHHHHHH
Q 006567 165 NAVSVIFVD--NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSV 242 (640)
Q Consensus 165 ~~v~ii~~~--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~il~~ 242 (640)
+.|+++..+ +.|.......+++.+++.|..+..... . .+.......++.+...++|.||+...... ...++.
T Consensus 17 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~--~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~~~~~ 90 (289)
T 2fep_A 17 TTVGVIIPDISSIFYSELARGIEDIATMYKYNIILSNS---D--QNMEKELHLLNTMLGKQVDGIVFMGGNIT-DEHVAE 90 (289)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC---T--TCHHHHHHHHHHHHHTTCSEEEECCSCCC-HHHHHH
T ss_pred CeEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEeC---C--CCHHHHHHHHHHHHhCCCCEEEEecCCCC-HHHHHH
Confidence 578888753 456667778888999999988765321 1 22444566778888889999988753222 334566
Q ss_pred HHHcCC
Q 006567 243 AKYLGM 248 (640)
Q Consensus 243 a~~~gl 248 (640)
+.+.|.
T Consensus 91 l~~~~i 96 (289)
T 2fep_A 91 FKRSPV 96 (289)
T ss_dssp HHHSSS
T ss_pred HHhcCC
Confidence 666554
No 260
>2fyi_A HTH-type transcriptional regulator CBL; Lys-R family, cofactor-binding DO cysteine biosynthesis; 2.80A {Escherichia coli K12} SCOP: c.94.1.1
Probab=41.77 E-value=72 Score=28.20 Aligned_cols=84 Identities=14% Similarity=0.193 Sum_probs=56.3
Q ss_pred CeEEEEeecCCCccceEEeecCCcceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHhhHHHHHHcCcccEEEeee
Q 006567 465 KLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDI 544 (640)
Q Consensus 465 ~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~~~~~~ 544 (640)
++|+|++... -...+-.+++..+.++.. ++++++.. ++...++..|.+|++|+++...
T Consensus 14 g~lrIg~~~~--------------~~~~~l~~~l~~f~~~~P-~v~l~l~~-------~~~~~~~~~l~~g~~Dl~i~~~ 71 (228)
T 2fyi_A 14 GVLTIATTHT--------------QARYSLPEVIKAFRELFP-EVRLELIQ-------GTPQEIATLLQNGEADIGIASE 71 (228)
T ss_dssp EEEEEEECHH--------------HHHHTHHHHHHHHHHHCT-TEEEEEEE-------CCHHHHHHHHHHTSCSEEEESS
T ss_pred ceEEEeeccc--------------hHHHHHHHHHHHHHHHCC-CcEEEEEe-------CCHHHHHHHHHcCCccEEEEec
Confidence 5789888521 123456678888888875 44566665 5688999999999999998642
Q ss_pred eeeccccceEEeCccccccceEEEEecCC
Q 006567 545 TIVTNRTKIVDFSQPYAASGLVVVVPFRK 573 (640)
Q Consensus 545 ~~t~~R~~~vdfs~p~~~~~~~il~~~~~ 573 (640)
.. .....+. ..++....+.+++++..
T Consensus 72 ~~--~~~~~l~-~~~l~~~~~~~v~~~~h 97 (228)
T 2fyi_A 72 RL--SNDPQLV-AFPWFRWHHSLLVPHDH 97 (228)
T ss_dssp SS--TTCTTEE-EEEEEEECEEEEEETTC
T ss_pred cc--CCCCCce-EEEeeecceEEEecCCC
Confidence 11 1112232 35777788888887654
No 261
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=41.67 E-value=42 Score=31.53 Aligned_cols=80 Identities=10% Similarity=0.044 Sum_probs=50.9
Q ss_pred CCcEEEEEEE------cCCCCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecChhhH
Q 006567 163 GWNAVSVIFV------DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLG 236 (640)
Q Consensus 163 ~w~~v~ii~~------~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~ 236 (640)
+-+.|+++.. ++.|.......+++.+++.|..+.....-. .......++.+...+.|.||+.......
T Consensus 5 ~s~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~------~~~~~~~~~~l~~~~vdGiIi~~~~~~~ 78 (294)
T 3qk7_A 5 RTDAIALAYPSRPRVLNNSTFLEMISWIGIELGKRGLDLLLIPDEP------GEKYQSLIHLVETRRVDALIVAHTQPED 78 (294)
T ss_dssp CCCEEEEEEESCSGGGSCHHHHHHHHHHHHHHHHTTCEEEEEEECT------TCCCHHHHHHHHHTCCSEEEECSCCSSC
T ss_pred ccceEEEEecCCCccccChhHHHHHHHHHHHHHHCCCEEEEEeCCC------hhhHHHHHHHHHcCCCCEEEEeCCCCCh
Confidence 3457888886 234556677888888999998876544322 1223445666677789988887543222
Q ss_pred HHHHHHHHHcCCc
Q 006567 237 FQVFSVAKYLGMM 249 (640)
Q Consensus 237 ~~il~~a~~~gl~ 249 (640)
..++.+.+.|++
T Consensus 79 -~~~~~l~~~~iP 90 (294)
T 3qk7_A 79 -FRLQYLQKQNFP 90 (294)
T ss_dssp -HHHHHHHHTTCC
T ss_pred -HHHHHHHhCCCC
Confidence 556667776653
No 262
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I}
Probab=41.64 E-value=29 Score=33.36 Aligned_cols=91 Identities=7% Similarity=0.001 Sum_probs=53.8
Q ss_pred CeEEEEeecCCCccceEEeecCCcceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHhhHH--HHHHcCccc---E
Q 006567 465 KLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLV--DSITTGVFD---A 539 (640)
Q Consensus 465 ~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~D---~ 539 (640)
+++++.++ |.| .+...-+.-.+.+.+.++||.++.++..+ -..|.+ ..+.+++.| +
T Consensus 17 kpi~liVp----~~~-------GG~~D~~aR~la~~l~~~lg~~vvV~N~p--------Ga~g~ig~~~v~~a~~DGytl 77 (312)
T 2f5x_A 17 RPVNMVVP----FAA-------GGPTDNVARSLAESMRPTLGETVVVENKG--------GAGGTIGTTQVARAQPDGYSI 77 (312)
T ss_dssp SCEEEEES----SCT-------TSHHHHHHHHHHHHHHHHHSSCEEEEECC--------CGGGHHHHHHHHTSCSSSSEE
T ss_pred CCEEEEEe----eCC-------ccHHHHHHHHHHHHHHHHhCCCEEEEecC--------ChHHHHHHHHHHhCCCCCcEE
Confidence 56777773 444 23344445567788888999884444432 367777 457888888 7
Q ss_pred EEeee--eeeccccceEEeC--------ccccccceEEEEecCCC
Q 006567 540 VVGDI--TIVTNRTKIVDFS--------QPYAASGLVVVVPFRKL 574 (640)
Q Consensus 540 ~~~~~--~~t~~R~~~vdfs--------~p~~~~~~~il~~~~~~ 574 (640)
.++.. ++++.+.+.+.|. -.+......+++++...
T Consensus 78 ~~~~~~~~~~~~~~~~~~yd~~~df~pv~~~~~~~~~lvv~~ds~ 122 (312)
T 2f5x_A 78 LLMHAGFSTAPSLYKNPGYEPYTSFEPIGLVVDVPMTIIARGDFP 122 (312)
T ss_dssp EEEETHHHHGGGTCSCCSSCTTTSEEEEEEEEEEEEEEEECTTCS
T ss_pred EEecCHHHHHHHHcCCCCCCcccccceeeecccCcEEEEEeCCCC
Confidence 66543 3455544333331 12345667777776653
No 263
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=41.55 E-value=1.2e+02 Score=25.40 Aligned_cols=85 Identities=13% Similarity=0.113 Sum_probs=46.2
Q ss_pred cEEEEEEEcC-CCCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChh-HHHHHHHHHhcCCceEEEEecChh--hH--HH
Q 006567 165 NAVSVIFVDN-EYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTG-YVMDLLVKVALMESRVIVLHVSPS--LG--FQ 238 (640)
Q Consensus 165 ~~v~ii~~~~-~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~-~~~~~l~~l~~~~~~vivl~~~~~--~~--~~ 238 (640)
+++.|+|... ......++.+.+.+.+.|..+.... .. .. +....+..+. ..|.||+.++.. .. ..
T Consensus 5 ~kv~IvY~S~~GnT~~iA~~ia~~l~~~g~~v~~~~---~~----~~~~~~~~~~~~~--~~d~ii~Gspty~g~~p~~~ 75 (159)
T 3fni_A 5 TSIGVFYVSEYGYSDRLAQAIINGITKTGVGVDVVD---LG----AAVDLQELRELVG--RCTGLVIGMSPAASAASIQG 75 (159)
T ss_dssp CEEEEEECTTSTTHHHHHHHHHHHHHHTTCEEEEEE---SS----SCCCHHHHHHHHH--TEEEEEEECCBTTSHHHHHH
T ss_pred CEEEEEEECCChHHHHHHHHHHHHHHHCCCeEEEEE---Cc----CcCCHHHHHHHHH--hCCEEEEEcCcCCCCccHHH
Confidence 5788998542 2233456677788877887665332 11 22 3444444443 367888875542 22 35
Q ss_pred HHHHHHHcCCccCCeEEEEe
Q 006567 239 VFSVAKYLGMMGNGYVWIAT 258 (640)
Q Consensus 239 il~~a~~~gl~~~~~~~i~~ 258 (640)
++.......+.+.....+++
T Consensus 76 ~l~~l~~~~~~~k~va~fgs 95 (159)
T 3fni_A 76 ALSTILGSVNEKQAVGIFET 95 (159)
T ss_dssp HHHHHHHHCCTTSEEEEECC
T ss_pred HHHHHHhhcccCCEEEEEEc
Confidence 66666555554433333433
No 264
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=41.21 E-value=43 Score=32.50 Aligned_cols=79 Identities=13% Similarity=0.045 Sum_probs=50.4
Q ss_pred CcEEEEEEEc--CCCCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecChhhHHHHHH
Q 006567 164 WNAVSVIFVD--NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFS 241 (640)
Q Consensus 164 w~~v~ii~~~--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~il~ 241 (640)
-.+|+++..+ +.|.....+.+++.+++.|..+..... . .+.......++.+...+.|.||+...... ...++
T Consensus 66 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~----~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~ 139 (348)
T 3bil_A 66 SNTIGVIVPSLINHYFAAMVTEIQSTASKAGLATIITNS-N----EDATTMSGSLEFLTSHGVDGIICVPNEEC-ANQLE 139 (348)
T ss_dssp --CEEEEESCSSSHHHHHHHHHHHHHHHHTTCCEEEEEC-T----TCHHHHHHHHHHHHHTTCSCEEECCCGGG-HHHHH
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEeC-C----CCHHHHHHHHHHHHhCCCCEEEEeCCCCC-hHHHH
Confidence 3568888753 456666778888889899987765321 1 22344556777888888998888754433 24566
Q ss_pred HHHHcCC
Q 006567 242 VAKYLGM 248 (640)
Q Consensus 242 ~a~~~gl 248 (640)
.+.+.|+
T Consensus 140 ~l~~~~i 146 (348)
T 3bil_A 140 DLQKQGM 146 (348)
T ss_dssp HHHHC-C
T ss_pred HHHhCCC
Confidence 6666554
No 265
>1zbm_A Hypothetical protein AF1704; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.30A {Archaeoglobus fulgidus} SCOP: c.94.1.1
Probab=41.20 E-value=29 Score=32.41 Aligned_cols=50 Identities=8% Similarity=-0.101 Sum_probs=31.3
Q ss_pred CCHhhHHHHHHcCcccEEEeeeeeeccccceEEeC--ccccc-cceEEEEecC
Q 006567 523 PSYTQLVDSITTGVFDAVVGDITIVTNRTKIVDFS--QPYAA-SGLVVVVPFR 572 (640)
Q Consensus 523 ~~~~~~~~~l~~~~~D~~~~~~~~t~~R~~~vdfs--~p~~~-~~~~il~~~~ 572 (640)
.++..++..|.+|++|+++.+......+.+.+++. .++.. ....+++++.
T Consensus 45 ~~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlv~~~ 97 (280)
T 1zbm_A 45 EDIETLNRKAFNAEYEVTAISAHAYALLDDKYRILSAGASVGDGYGPVVVAKS 97 (280)
T ss_dssp CCHHHHHHHGGGTCCSEEEEEHHHHTTSTTTEEECSSCCEEESSCCCEEEESS
T ss_pred CCHHHHHHHHHcCCCCEEEECHHHHHHhcCCCcEEeeccccCCCeeEEEEEcC
Confidence 56999999999999999986544344444445553 23333 3334566554
No 266
>2jfn_A Glutamate racemase; cell WALL, isomerase, cell shape, UDP- murnac-Ala, peptidoglycan biosynthesis, peptidoglycan synthesis; HET: GLU UMA; 1.9A {Escherichia coli}
Probab=40.98 E-value=1.2e+02 Score=28.54 Aligned_cols=36 Identities=6% Similarity=0.119 Sum_probs=23.7
Q ss_pred HhHh-cCcEEEEcCCChHHHHHHHHhhccCCceEEec
Q 006567 91 RFME-TDIVAIIGPQCSTVAHIVSYVSNELQVPLLSF 126 (640)
Q Consensus 91 ~l~~-~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~ 126 (640)
.+++ .|+.+|+-+=++.++..+..+-+..++|+|..
T Consensus 78 ~ll~~~g~d~IviaCNTas~~~l~~lr~~~~iPVigi 114 (285)
T 2jfn_A 78 AVQERYPLALAVVACNTASTVSLPALREKFDFPVVGV 114 (285)
T ss_dssp HHHHHSCCSEEEECCHHHHHHHHHHHHHHCSSCEECC
T ss_pred HHHHhCCCCEEEEECccccHHHHHHHHHhCCCCEEeh
Confidence 3444 58988887444444345666667789999973
No 267
>2g29_A Nitrate transport protein NRTA; solute-binding protein, alpha-beta protein; 1.50A {Synechocystis SP}
Probab=40.70 E-value=17 Score=36.65 Aligned_cols=89 Identities=11% Similarity=0.045 Sum_probs=52.5
Q ss_pred CCeEEEEeecCCCccceEEeecCCcceeeeeHHHHHHHHHhCCC-CccEEEEEcCCCCCCCCHhhHHHHHHcCc----cc
Q 006567 464 GKLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPY-AVPYQFVAFGDGHKNPSYTQLVDSITTGV----FD 538 (640)
Q Consensus 464 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~D 538 (640)
..+|||+......+.|+....+ .| +.++.|+ + +++... .+|..++..|..|+ +|
T Consensus 32 ~~~l~ig~~~~~~~~p~~vA~~-----~G--------~~~~~Gl~~--Ve~~~~------~~~~~~~~al~~G~~~~giD 90 (417)
T 2g29_A 32 VTTAKLGFIALTDAAPLIIAKE-----KG--------FYAKYGMPD--VEVLKQ------ASWGTTRDNLVLGSASGGID 90 (417)
T ss_dssp CSCCEEEECSSGGGHHHHHHHH-----TT--------HHHHTTCTT--CEEEEC------SCHHHHHHHHHHCGGGTSCS
T ss_pred CceEEEEeeccHhHHHHHHHHH-----CC--------chHHcCCCe--eEEEec------CCHHHHHHHHHCCCCcCCcC
Confidence 3568988764333444322111 12 4556688 7 445543 46999999999999 99
Q ss_pred EEEee--ee--eecc---ccceEEeCcc--ccccceEEEEecCC
Q 006567 539 AVVGD--IT--IVTN---RTKIVDFSQP--YAASGLVVVVPFRK 573 (640)
Q Consensus 539 ~~~~~--~~--~t~~---R~~~vdfs~p--~~~~~~~il~~~~~ 573 (640)
++... +. ++.. |.+..++..+ +...+..|++++..
T Consensus 91 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~v~~~~ 134 (417)
T 2g29_A 91 GAHILTPMPYLITMGTVTDGKPTPMYILARLNVNGQGIQLGNNY 134 (417)
T ss_dssp EEEEETHHHHHHHHCTTSSSCCCCEEEEEECCBSCEEEEECGGG
T ss_pred eEeecchHHHHHHhCcccCCCCCCEEEEEEeccCCeEEEEecch
Confidence 99753 22 3322 2333444333 24557888887654
No 268
>4gd5_A Phosphate ABC transporter, phosphate-binding PROT; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.70A {Clostridium perfringens}
Probab=40.49 E-value=42 Score=31.45 Aligned_cols=38 Identities=8% Similarity=0.183 Sum_probs=20.9
Q ss_pred CCCeeEEEEEEeecCCccchHHHHHHHHHHHHHhccCCCCCCcEEEEEE
Q 006567 27 ARPAVVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITM 75 (640)
Q Consensus 27 ~~~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~ 75 (640)
...++|+|.+- +. ....++...+++.+.. |+.+|++..
T Consensus 34 ~~~~~i~i~GS----ss----~~p~~~~~a~~f~~~~---p~v~v~~~~ 71 (279)
T 4gd5_A 34 KSTNSVSISGS----TS----VGPVMEAEAEAFKTKK---PDVSIEINQ 71 (279)
T ss_dssp ---CEEEEEEC----TT----THHHHHHHHHHHHHHS---TTCEEEEEE
T ss_pred cCCCeEEEEEe----Cc----HHHHHHHHHHHHHHHC---CCceEEEee
Confidence 34457887652 11 2345555666666554 688888765
No 269
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=40.38 E-value=60 Score=31.12 Aligned_cols=84 Identities=12% Similarity=-0.001 Sum_probs=51.5
Q ss_pred HHhcCCcEEEEEEEc--CCCCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecChhhH
Q 006567 159 VSYYGWNAVSVIFVD--NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLG 236 (640)
Q Consensus 159 l~~~~w~~v~ii~~~--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~ 236 (640)
|+.-.-.+|+++..+ +.|.......+++.+++.|..+..... . .+.......++.+...+.|.||+......
T Consensus 58 l~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~~- 131 (332)
T 2o20_A 58 LASKRTTTVGVILPTITSTYFAAITRGVDDIASMYKYNMILANS---D--NDVEKEEKVLETFLSKQVDGIVYMGSSLD- 131 (332)
T ss_dssp ----CCCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEEC---T--TCHHHHHHHHHHHHHTTCSEEEECSSCCC-
T ss_pred HhcCCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEEC---C--CChHHHHHHHHHHHhCCCCEEEEeCCCCC-
Confidence 333344678888853 456667778888899999988765421 1 22344556777888888999988753222
Q ss_pred HHHHHHHHHcCC
Q 006567 237 FQVFSVAKYLGM 248 (640)
Q Consensus 237 ~~il~~a~~~gl 248 (640)
...++.+.+.|.
T Consensus 132 ~~~~~~l~~~~i 143 (332)
T 2o20_A 132 EKIRTSLKNSRT 143 (332)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHhCCC
Confidence 234555555554
No 270
>4ecf_A ABC-type phosphate transport system, periplasmic; ABC transporter, phosphate transport receptor; HET: MSE; 1.55A {Lactobacillus brevis}
Probab=40.34 E-value=51 Score=30.60 Aligned_cols=71 Identities=8% Similarity=-0.009 Sum_probs=49.0
Q ss_pred eeHHHHHHHHHhC-CCCccEEEEEcCCCCCCCCHhhHHHHHHcCcccEEEeeeeeecc---ccceEEeCccccccceEEE
Q 006567 493 FCIDVFTAAVNLL-PYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDITIVTN---RTKIVDFSQPYAASGLVVV 568 (640)
Q Consensus 493 ~~~dl~~~i~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~~~~~~~~t~~---R~~~vdfs~p~~~~~~~il 568 (640)
+.-++++.+.++. +.+ +.+.. +.....+.+|.+|++|+++....++.+ +...+ -..|+...+++++
T Consensus 17 ~l~~~~~~f~~~~P~v~--i~v~~-------~~S~~~~~~l~~g~~Dig~~~~~~~~~e~~~~~~l-~~~~i~~d~lvvv 86 (264)
T 4ecf_A 17 LVEAAGEQYTGEHLGTF--INVQG-------GGTGTGLSQIQEGAVQIGNSDLFAGEQKGINARQL-VDHRVAVVGITPI 86 (264)
T ss_dssp HHHHHHHHHHHHSTTEE--EEEEE-------ECHHHHHHHHHHTSSSEEEESSCGGGSTTCCGGGE-ECCEEEEEEEEEE
T ss_pred HHHHHHHHHHHHCCCce--EEEEe-------CCCHHHHHHHHcCCCchhhccCCCChhHHhhccCC-EEEEEEEEEEEEE
Confidence 4456777777776 455 44444 458889999999999999876554432 11122 2689999999999
Q ss_pred EecCC
Q 006567 569 VPFRK 573 (640)
Q Consensus 569 ~~~~~ 573 (640)
++..+
T Consensus 87 v~~~~ 91 (264)
T 4ecf_A 87 VNKKV 91 (264)
T ss_dssp ECTTS
T ss_pred EcCCC
Confidence 98654
No 271
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=40.23 E-value=60 Score=30.18 Aligned_cols=80 Identities=8% Similarity=0.085 Sum_probs=51.0
Q ss_pred cEEEEEEEc--CCCCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecC-hhhHHHHHH
Q 006567 165 NAVSVIFVD--NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVS-PSLGFQVFS 241 (640)
Q Consensus 165 ~~v~ii~~~--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~-~~~~~~il~ 241 (640)
++|+++..+ +.|.....+.+++.+++.|..+..... . .+...-...++.+...++|.||+... .......++
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~~~~~~---~--~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~ 76 (283)
T 2ioy_A 2 KTIGLVISTLNNPFFVTLKNGAEEKAKELGYKIIVEDS---Q--NDSSKELSNVEDLIQQKVDVLLINPVDSDAVVTAIK 76 (283)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEEC---T--TCHHHHHHHHHHHHHTTCSEEEECCSSTTTTHHHHH
T ss_pred eEEEEEecCCCCHHHHHHHHHHHHHHHhcCcEEEEecC---C--CCHHHHHHHHHHHHHcCCCEEEEeCCchhhhHHHHH
Confidence 357777653 456666778888888888988765421 1 12333455677777788999888643 333345667
Q ss_pred HHHHcCCc
Q 006567 242 VAKYLGMM 249 (640)
Q Consensus 242 ~a~~~gl~ 249 (640)
.+.+.|.+
T Consensus 77 ~~~~~~iP 84 (283)
T 2ioy_A 77 EANSKNIP 84 (283)
T ss_dssp HHHHTTCC
T ss_pred HHHHCCCe
Confidence 77776653
No 272
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=39.91 E-value=73 Score=27.15 Aligned_cols=62 Identities=13% Similarity=0.190 Sum_probs=40.2
Q ss_pred EEEEEEEcCCC-----CcccHHHHHHH----HhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEec
Q 006567 166 AVSVIFVDNEY-----GRNGVSALNDK----LAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHV 231 (640)
Q Consensus 166 ~v~ii~~~~~~-----g~~~~~~~~~~----~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~ 231 (640)
+++||...|+- -......+.+. +++.|..+.....++.+ ...+...+++..+.++|+||..+
T Consensus 7 ~v~Ii~~GdEl~~G~i~D~n~~~l~~~~~~~l~~~G~~v~~~~iv~Dd----~~~I~~~l~~a~~~~~DlVittG 77 (167)
T 2g2c_A 7 KSAIIVVSDRISTGTRENKALPLLQRLMSDELQDYSYELISEVVVPEG----YDTVVEAIATALKQGARFIITAG 77 (167)
T ss_dssp EEEEEEECHHHHHTSSCCCHHHHHHHHHCC----CEEEEEEEEEECSS----HHHHHHHHHHHHHTTCSEEEEES
T ss_pred EEEEEEECCcccCCceeccHHHHHHHhHHhHHHHCCCEEeEEEEeCCC----HHHHHHHHHHHHhCCCCEEEECC
Confidence 67777654431 12345567788 88889888776666644 67788888887765689888874
No 273
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=39.59 E-value=45 Score=31.15 Aligned_cols=82 Identities=6% Similarity=0.015 Sum_probs=50.6
Q ss_pred cCCcEEEEEEEc--C--CCCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecChhhHH
Q 006567 162 YGWNAVSVIFVD--N--EYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGF 237 (640)
Q Consensus 162 ~~w~~v~ii~~~--~--~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~ 237 (640)
-+-+.|+++..+ + .|....++.+++.+++.|..+.....-. +..........+...+.|.||+...... .
T Consensus 6 ~~s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-----~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~ 79 (288)
T 3gv0_A 6 GKTNVIALVLSVDEELMGFTSQMVFGITEVLSTTQYHLVVTPHIH-----AKDSMVPIRYILETGSADGVIISKIEPN-D 79 (288)
T ss_dssp -CCCEEEEECBCCCCSSCHHHHHHHHHHHHHTTSSCEEEECCBSS-----GGGTTHHHHHHHHHTCCSEEEEESCCTT-C
T ss_pred CCCCEEEEEecCCccccHHHHHHHHHHHHHHHHcCCEEEEecCCc-----chhHHHHHHHHHHcCCccEEEEecCCCC-c
Confidence 344678888764 2 5667778888899999998876542211 1222344455566678998888743322 2
Q ss_pred HHHHHHHHcCCc
Q 006567 238 QVFSVAKYLGMM 249 (640)
Q Consensus 238 ~il~~a~~~gl~ 249 (640)
..++.+.+.|++
T Consensus 80 ~~~~~l~~~~iP 91 (288)
T 3gv0_A 80 PRVRFMTERNMP 91 (288)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHhhCCCC
Confidence 456666666643
No 274
>2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis}
Probab=39.17 E-value=22 Score=34.29 Aligned_cols=90 Identities=12% Similarity=0.078 Sum_probs=51.9
Q ss_pred CeEEEEeecCCCccceEEeecCCcceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHhhHH--HHHHcCccc---E
Q 006567 465 KLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLV--DSITTGVFD---A 539 (640)
Q Consensus 465 ~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~D---~ 539 (640)
+++++.++ |.| .+...-+.--+.+.+.++||.++.++..+ -..|.+ ..+.+++.| +
T Consensus 19 ~pi~iivp----~~~-------GG~~D~~aR~la~~l~~~lg~~vvV~N~p--------Ga~g~ig~~~v~~a~~DGytl 79 (314)
T 2dvz_A 19 KAIRVIVP----FAP-------GGSTDIIARLVTQRMSQELGQPMVVENKG--------GAGGAIGASEAARAEPDGYTL 79 (314)
T ss_dssp SCEEEEES----SCT-------TSHHHHHHHHHHHHHHHHHTSCEEEEECC--------CGGGHHHHHHHHHSCTTSSEE
T ss_pred CCEEEEEc----cCC-------ccHHHHHHHHHHHHHHHHhCCCEEEEECC--------CchHHHHHHHHHhCCCCCcEE
Confidence 56777663 444 23333344456788888899884444433 256777 458888888 6
Q ss_pred EEee---eeeecccc-ceEEeC--------ccccccceEEEEecCC
Q 006567 540 VVGD---ITIVTNRT-KIVDFS--------QPYAASGLVVVVPFRK 573 (640)
Q Consensus 540 ~~~~---~~~t~~R~-~~vdfs--------~p~~~~~~~il~~~~~ 573 (640)
.++. +++++.+. +.+.|. ..+......+++++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~yd~~~df~pv~~~~~~~~~lvv~~ds 125 (314)
T 2dvz_A 80 SIATVSTMAVNPACRPKDLPYDPIKDFQPVTNFANTANVVAVNPKF 125 (314)
T ss_dssp EEECHHHHTHHHHHSTTTCSCCTTTSEEEEEEEEEECEEEEECTTS
T ss_pred EEecCcHHHHHHHHhCCCCCCCchhccceeeEcccCCEEEEEeCCC
Confidence 6543 34444443 333331 1245567788887665
No 275
>1b73_A Glutamate racemase; isomerase; 2.30A {Aquifex pyrophilus} SCOP: c.78.2.1 c.78.2.1 PDB: 1b74_A*
Probab=39.13 E-value=1.3e+02 Score=27.71 Aligned_cols=120 Identities=16% Similarity=0.121 Sum_probs=61.9
Q ss_pred HHHHHHhHhcCcEEEEcCCChHHHHHHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHHhcCCc
Q 006567 86 MVEALRFMETDIVAIIGPQCSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVSYYGWN 165 (640)
Q Consensus 86 ~~~a~~l~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~~~~w~ 165 (640)
.+.+..+.+.|+.+|+-+-++..+..+..+-+..++|++... . .++...++..+-+
T Consensus 52 ~~~~~~L~~~g~d~iviaCnTa~~~~~~~lr~~~~iPvigi~--e----------------------~~~~~A~~~~~~~ 107 (254)
T 1b73_A 52 LECAGFLKDKGVDIIVVACNTASAYALERLKKEINVPVFGVI--E----------------------PGVKEALKKSRNK 107 (254)
T ss_dssp HHHHHHHHTTTCSEEEECCHHHHTTSHHHHHHHSSSCEEESH--H----------------------HHHHHHHHHCSSC
T ss_pred HHHHHHHHHCCCCEEEEeCchhhHHHHHHHHHhCCCCEEeee--H----------------------HHHHHHHHccCCC
Confidence 334444555699988874444432345555566789988631 0 1111223334667
Q ss_pred EEEEEEEcCCCCcccHHHHHHHHhhcCeEEEEeec--cCCCCCC---C----hhHHHHHHHHHhcCCceEEEEecCh
Q 006567 166 AVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSG--IPPESGV---N----TGYVMDLLVKVALMESRVIVLHVSP 233 (640)
Q Consensus 166 ~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~--~~~~~~~---~----~~~~~~~l~~l~~~~~~vivl~~~~ 233 (640)
+|+++.+....- ...+++.+++.|+++..... +-..-.. + ...+...++++.+. +|+|||.|..
T Consensus 108 rigVlaT~~T~~---~~~y~~~l~~~g~~v~~~~~~~~v~~ie~g~~~~~~~~~~l~~~~~~l~~~-~d~IILGCT~ 180 (254)
T 1b73_A 108 KIGVIGTPATVK---SGAYQRKLEEGGADVFAKACPLFAPLAEEGLLEGEITRKVVEHYLKEFKGK-IDTLILGCTH 180 (254)
T ss_dssp EEEEEECHHHHH---HCHHHHHHHTTSCEEEEEECCCCTTTSCGGGGSGGGHHHHHHHHSTTTTTT-CSEEEECCCC
T ss_pred EEEEEEChHHhh---hHHHHHHHHcCCCEEEecCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHhc-CCEEEECccC
Confidence 999987654211 11344555567777642211 1000000 1 12344444455555 9999998754
No 276
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=39.10 E-value=29 Score=32.55 Aligned_cols=81 Identities=10% Similarity=0.007 Sum_probs=53.3
Q ss_pred cCCcEEEEEEEc--CCCCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecChhhHHHH
Q 006567 162 YGWNAVSVIFVD--NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQV 239 (640)
Q Consensus 162 ~~w~~v~ii~~~--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~i 239 (640)
-+-.+|+++..+ +.|.......+++.+++.|..+.....- .+.......++.+...+.|.||+..... ....
T Consensus 6 ~~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-----~~~~~~~~~~~~l~~~~vdgiIi~~~~~-~~~~ 79 (291)
T 3egc_A 6 KRSNVVGLIVSDIENVFFAEVASGVESEARHKGYSVLLANTA-----EDIVREREAVGQFFERRVDGLILAPSEG-EHDY 79 (291)
T ss_dssp -CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECT-----TCHHHHHHHHHHHHHTTCSEEEECCCSS-CCHH
T ss_pred CCCcEEEEEECCCcchHHHHHHHHHHHHHHHCCCEEEEEeCC-----CCHHHHHHHHHHHHHCCCCEEEEeCCCC-ChHH
Confidence 344678888753 4456667888899999999887754321 2245556778888888999999875443 3345
Q ss_pred HHHHHHcCC
Q 006567 240 FSVAKYLGM 248 (640)
Q Consensus 240 l~~a~~~gl 248 (640)
++.+.+.|+
T Consensus 80 ~~~~~~~~i 88 (291)
T 3egc_A 80 LRTELPKTF 88 (291)
T ss_dssp HHHSSCTTS
T ss_pred HHHhhccCC
Confidence 555555444
No 277
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=39.07 E-value=70 Score=29.43 Aligned_cols=79 Identities=4% Similarity=0.080 Sum_probs=51.0
Q ss_pred cEEEEEEEc--CCCCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecCh-hhHHHHHH
Q 006567 165 NAVSVIFVD--NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP-SLGFQVFS 241 (640)
Q Consensus 165 ~~v~ii~~~--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~-~~~~~il~ 241 (640)
+.|+++..+ +.|.....+.+++.+++.|..+..... . .+...-...++.+...++|.||+.... ......++
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~~~~~~---~--~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~ 76 (271)
T 2dri_A 2 DTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDS---Q--NNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVK 76 (271)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEEC---T--TCHHHHHHHHHHHTTTTEEEEEECCSSTTTTHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHHHHHHHHcCcEEEEeCC---C--CCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHH
Confidence 467777753 456667778888889999988765321 1 123334556777878889998886432 33335667
Q ss_pred HHHHcCC
Q 006567 242 VAKYLGM 248 (640)
Q Consensus 242 ~a~~~gl 248 (640)
.+.+.|.
T Consensus 77 ~~~~~~i 83 (271)
T 2dri_A 77 MANQANI 83 (271)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 7777664
No 278
>1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan biosynthesi isomerase; HET: DGL; 1.75A {Bacillus subtilis}
Probab=39.05 E-value=2e+02 Score=26.65 Aligned_cols=42 Identities=10% Similarity=0.137 Sum_probs=27.6
Q ss_pred HHHHHHHhHh-cCcEEEEcCCChHHHHHHHHhhccCCceEEec
Q 006567 85 GMVEALRFME-TDIVAIIGPQCSTVAHIVSYVSNELQVPLLSF 126 (640)
Q Consensus 85 a~~~a~~l~~-~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~ 126 (640)
..+.+..+.+ .|+.+|+-+=++.++..+..+-+..++|+|..
T Consensus 54 ~~~~~~~L~~~~g~d~iViACNTas~~~l~~lr~~~~iPVigi 96 (272)
T 1zuw_A 54 TWELTNYLLENHHIKMLVIACNTATAIALDDIQRSVGIPVVGV 96 (272)
T ss_dssp HHHHHHHHHHHSCCSEEEECCHHHHHHHHHHHHHHCSSCEEES
T ss_pred HHHHHHHHHhhcCCCEEEEeCchhhHHHHHHHHHHCCCCEEcc
Confidence 3444555667 79998887444444445666667779999963
No 279
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=39.05 E-value=32 Score=32.36 Aligned_cols=87 Identities=9% Similarity=0.017 Sum_probs=52.0
Q ss_pred HHHHhcCCcEEEEEEEc--CCCCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecChh
Q 006567 157 EMVSYYGWNAVSVIFVD--NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPS 234 (640)
Q Consensus 157 ~ll~~~~w~~v~ii~~~--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~ 234 (640)
.-|+.-.-.+|+++..+ +.|.....+.+++.+++.|+.+..... . .+.......++.+...++|.||+.....
T Consensus 13 r~L~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~--~~~~~~~~~~~~l~~~~vdgii~~~~~~ 87 (293)
T 2iks_A 13 AGLRAGRTRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACS---E--DQPDNEMRCIEHLLQRQVDAIIVSTSLP 87 (293)
T ss_dssp -----CCCCEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEEC---T--TCHHHHHHHHHHHHHTTCSEEEECCSSC
T ss_pred HHhhcCCCcEEEEEeCCCcCcHHHHHHHHHHHHHHHCCCEEEEEcC---C--CCHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 33444445678888753 446666778888889899988765321 1 1234455677788888899988875432
Q ss_pred hHHHHHHHHHHcCC
Q 006567 235 LGFQVFSVAKYLGM 248 (640)
Q Consensus 235 ~~~~il~~a~~~gl 248 (640)
....+++.+.+.|+
T Consensus 88 ~~~~~~~~~~~~~i 101 (293)
T 2iks_A 88 PEHPFYQRWANDPF 101 (293)
T ss_dssp TTCHHHHTTTTSSS
T ss_pred CcHHHHHHHHhCCC
Confidence 22234555555443
No 280
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=38.98 E-value=2.2e+02 Score=26.57 Aligned_cols=58 Identities=9% Similarity=-0.062 Sum_probs=33.9
Q ss_pred CCcEEEEEEccCC------CChHHHHH----HHHHhHhcCcEEEEcCCChHHHHHHHHhhccCCceEEe
Q 006567 67 HGTKLNITMQSSN------CSGFIGMV----EALRFMETDIVAIIGPQCSTVAHIVSYVSNELQVPLLS 125 (640)
Q Consensus 67 ~g~~i~~~~~D~~------~~~~~a~~----~a~~l~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is 125 (640)
|+.++-+. .|+. .+.....+ .+..|.+.|+.+|+-+-++..+.++..+-+..++|+|.
T Consensus 48 P~e~~iy~-~D~a~~PYG~ks~e~i~~~~~~~~~~L~~~g~d~IVIACNTa~~~al~~lr~~~~iPvig 115 (274)
T 3uhf_A 48 LFDEIIYY-GDTARVPYGVKDKDTIIKFCLEALDFFEQFQIDMLIIACNTASAYALDALRAKAHFPVYG 115 (274)
T ss_dssp CCSEEEEE-ECTTTCCCTTSCHHHHHHHHHHHHHHHTTSCCSEEEECCHHHHHHSHHHHHHHCSSCEEC
T ss_pred CCCCEEEE-ecCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHhcCCCEEc
Confidence 66766543 3543 23333332 33334445999988755555444456666777999996
No 281
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=38.91 E-value=84 Score=28.74 Aligned_cols=94 Identities=11% Similarity=-0.051 Sum_probs=64.2
Q ss_pred HHHHHHHHHhcCCcEEEEEEEc--CCCCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEE
Q 006567 152 MTAVAEMVSYYGWNAVSVIFVD--NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVL 229 (640)
Q Consensus 152 ~~al~~ll~~~~w~~v~ii~~~--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl 229 (640)
....++.++..|.+.|=+.... .......++.+++.+++.|+.+........ .....+...++..+..+++.|++
T Consensus 32 ~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~---~~~~~~~~~i~~A~~lGa~~v~~ 108 (257)
T 3lmz_A 32 LDTTLKTLERLDIHYLCIKDFHLPLNSTDEQIRAFHDKCAAHKVTGYAVGPIYM---KSEEEIDRAFDYAKRVGVKLIVG 108 (257)
T ss_dssp HHHHHHHHHHTTCCEEEECTTTSCTTCCHHHHHHHHHHHHHTTCEEEEEEEEEE---CSHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHhCCCEEEEecccCCCCCCHHHHHHHHHHHHHcCCeEEEEecccc---CCHHHHHHHHHHHHHhCCCEEEe
Confidence 3667778888899888765321 112234467889999999998764432211 23566777787777888888888
Q ss_pred ecChhhHHHHHHHHHHcCC
Q 006567 230 HVSPSLGFQVFSVAKYLGM 248 (640)
Q Consensus 230 ~~~~~~~~~il~~a~~~gl 248 (640)
....+....+.+.|++.|+
T Consensus 109 ~p~~~~l~~l~~~a~~~gv 127 (257)
T 3lmz_A 109 VPNYELLPYVDKKVKEYDF 127 (257)
T ss_dssp EECGGGHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHHHcCC
Confidence 7666667777777777664
No 282
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=38.69 E-value=2.3e+02 Score=26.18 Aligned_cols=115 Identities=10% Similarity=0.018 Sum_probs=65.6
Q ss_pred EEEEEeecC-CccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhc-----CcEEEEcCCCh
Q 006567 33 NVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMET-----DIVAIIGPQCS 106 (640)
Q Consensus 33 ~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~-----~v~aiiGp~~s 106 (640)
+||.+.... .........|++.|+++. |.++.. .....+...+.+.+.+++.. .+.||+.. +.
T Consensus 133 ~I~~i~~~~~~~~~~~R~~Gf~~al~~~--------g~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~ai~~~-~d 201 (295)
T 3hcw_A 133 ELIFITEKGNFEVSKDRIQGFETVASQF--------NLDYQI--IETSNEREVILNYMQNLHTRLKDPNIKQAIISL-DA 201 (295)
T ss_dssp EEEEEEESSCCHHHHHHHHHHHHHHHHT--------TCEEEE--EEECSCHHHHHHHHHHHHHHHTCTTSCEEEEES-SH
T ss_pred cEEEEcCCccchhHHHHHHHHHHHHHHc--------CCCeeE--EeccCCHHHHHHHHHHHHhhcccCCCCcEEEEC-Ch
Confidence 677776643 223345578888888773 334442 23344566666667777653 68999973 33
Q ss_pred HHHHHHHHhhccCC--ce----EEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHH
Q 006567 107 TVAHIVSYVSNELQ--VP----LLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVS 160 (640)
Q Consensus 107 ~~~~~v~~~~~~~~--iP----~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~ 160 (640)
..+..+...+.+.+ || ++++... .+.....|.+-.+..+...+++..+++|.
T Consensus 202 ~~A~g~~~al~~~g~~vP~di~vig~D~~--~~~~~~~p~lttv~~~~~~~g~~a~~~l~ 259 (295)
T 3hcw_A 202 MLHLAILSVLYELNIEIPKDVMTATFNDS--YLTEIASPPQTCIDIKPRMLGQQAGSAIL 259 (295)
T ss_dssp HHHHHHHHHHHHTTCCTTTTEEEEEECCS--HHHHTSSSCCEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCceEEEEeCCh--hHHhhCCCCeeEEEECHHHHHHHHHHHHH
Confidence 44444455554443 34 5654321 12222234555666777788888888654
No 283
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=38.63 E-value=35 Score=28.11 Aligned_cols=35 Identities=17% Similarity=0.243 Sum_probs=21.2
Q ss_pred HHHHHHHHHhhhcccCCCCCCCccccchhhhHhHhhhhh
Q 006567 597 FVVVGIVVWILEHRINDEFRGPPKRQVITILWFSLSTLF 635 (640)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 635 (640)
+++.+.+++.+++..+ ++...++.+++||++.++-
T Consensus 19 ~~~~a~~~~~~e~~~~----~~~~~~~~~a~yf~~~T~t 53 (139)
T 3eff_K 19 LLAGSYLAVLAERGAP----GAQLITYPRALWWSVETAT 53 (139)
T ss_dssp HHHHHHHHHHTTSSCT----TCCCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCC----CcccCCHHHHHHHHheeee
Confidence 3344566667765432 2233467888998887763
No 284
>1twy_A ABC transporter, periplasmic substrate-binding PR; nysgxrc target, structural genomics, protei structure initiative, PSI; 1.65A {Vibrio cholerae o1 biovar eltor} SCOP: c.94.1.1
Probab=38.59 E-value=47 Score=30.73 Aligned_cols=59 Identities=3% Similarity=-0.035 Sum_probs=30.1
Q ss_pred cCCCeeEEEEEEeecCCccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcCcEEEEc
Q 006567 26 SARPAVVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIG 102 (640)
Q Consensus 26 ~~~~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aiiG 102 (640)
....++|+||+.-.. ..-+...+.++.+.. |+.++++...+ .. .....+.+..+++.++
T Consensus 24 ~~~~g~l~Ig~~~~~--------~~~l~~~l~~f~~~~---P~i~v~i~~~~----~~---~~~~~l~~g~~Di~i~ 82 (290)
T 1twy_A 24 FVQASEITISGSTSV--------ARIMDVLAEKYNQQH---PETYVAVQGVG----ST---AGISLLKKGVADIAMT 82 (290)
T ss_dssp ----CEEEEEECHHH--------HHHHHHHHHHHHHHC---TTCEEEEEESC----HH---HHHHHHHTTSCSEEEE
T ss_pred cccCCCEEEecCcch--------HHHHHHHHHHHHhhC---CCceEEEEecC----cH---HHHHHHhcCCCcEEEe
Confidence 445578999974321 123445566666554 67888876522 11 1223344556666654
No 285
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=38.28 E-value=96 Score=29.80 Aligned_cols=79 Identities=11% Similarity=0.027 Sum_probs=53.1
Q ss_pred cEEEEEEE--cCCCCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecChhhHHHHHHH
Q 006567 165 NAVSVIFV--DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSV 242 (640)
Q Consensus 165 ~~v~ii~~--~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~il~~ 242 (640)
+.|+++.. ++.|.....+.+++.+++.|..+..... . .+.......++.+...+.|.||+....... ..++.
T Consensus 69 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~----~~~~~~~~~i~~l~~~~vdGiIi~~~~~~~-~~~~~ 142 (344)
T 3kjx_A 69 NLVAVIIPSLSNMVFPEVLTGINQVLEDTELQPVVGVT-D----YLPEKEEKVLYEMLSWRPSGVIIAGLEHSE-AARAM 142 (344)
T ss_dssp SEEEEEESCSSSSSHHHHHHHHHHHHTSSSSEEEEEEC-T----TCHHHHHHHHHHHHTTCCSEEEEECSCCCH-HHHHH
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHHHHHHCCCEEEEEeC-C----CCHHHHHHHHHHHHhCCCCEEEEECCCCCH-HHHHH
Confidence 46787775 3556677788899999999988764321 1 124455667788888899999887543222 55666
Q ss_pred HHHcCCc
Q 006567 243 AKYLGMM 249 (640)
Q Consensus 243 a~~~gl~ 249 (640)
+.+.|++
T Consensus 143 l~~~~iP 149 (344)
T 3kjx_A 143 LDAAGIP 149 (344)
T ss_dssp HHHCSSC
T ss_pred HHhCCCC
Confidence 7776653
No 286
>3cvg_A Putative metal binding protein; PSI-II, NYSGXRC, periplasmic, structural GENO protein structure initiative; 1.97A {Coccidioides immitis}
Probab=38.27 E-value=23 Score=33.71 Aligned_cols=73 Identities=10% Similarity=0.161 Sum_probs=49.6
Q ss_pred eeeHHHHHHHHHh---C---CCCccEEEEEcCCCCCCCCHhhHHHHHHcCcccEEEeeeeeecccc--ceEEe-Cc-ccc
Q 006567 492 GFCIDVFTAAVNL---L---PYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDITIVTNRT--KIVDF-SQ-PYA 561 (640)
Q Consensus 492 G~~~dl~~~i~~~---l---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~~~~~~~~t~~R~--~~vdf-s~-p~~ 561 (640)
.+..+++..+.++ . +.+ +++.. ++...++..|.+|++|+++..-....+.. +.+.+ .. ++.
T Consensus 33 ~~lp~ll~~F~~~~~~~~~P~v~--v~l~~-------~~s~~l~~~l~~G~~Dl~i~~~~~~~~~l~~~~~~~~~~~~l~ 103 (294)
T 3cvg_A 33 GLVKELADAFIKSKVDSGSAPFK--VAWYK-------SDTTVTINYLKDGIVDVGITYSPVAERISIKHGISESPSYYAF 103 (294)
T ss_dssp THHHHHHHHHHHHHHSCC---CE--EEEEE-------CCHHHHHHHHHTTSCSEEEESCHHHHHHHHHTTSBCSSCEEEE
T ss_pred HHHHHHHHHHHhhhcccCCCCeE--EEEEe-------CCHHHHHHHHHcCCCcEEEEcCchhhhHHHhCCcccceeeeEE
Confidence 4667888999988 7 666 66655 67999999999999999976432221110 11122 24 788
Q ss_pred ccceEEEEecCC
Q 006567 562 ASGLVVVVPFRK 573 (640)
Q Consensus 562 ~~~~~il~~~~~ 573 (640)
...+.+++++..
T Consensus 104 ~d~lvlv~~~~h 115 (294)
T 3cvg_A 104 RDHFMLIGPPSN 115 (294)
T ss_dssp EEEEEEEECTTC
T ss_pred eccEEEEecCCC
Confidence 888888887655
No 287
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}
Probab=38.21 E-value=3.4e+02 Score=27.65 Aligned_cols=144 Identities=12% Similarity=0.064 Sum_probs=83.6
Q ss_pred ChHHHHHHHHHhHhcCcEEEEcCC--ChHHHHHHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHH
Q 006567 81 SGFIGMVEALRFMETDIVAIIGPQ--CSTVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEM 158 (640)
Q Consensus 81 ~~~~a~~~a~~l~~~~v~aiiGp~--~s~~~~~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~l 158 (640)
.+..+...+.++.+.|+.+|+=.. .......+..++...++.++.|.+ . .... +. +.......
T Consensus 45 Pa~~v~~~v~e~~~~Gv~~viis~Gf~~~~~~~l~~~A~~~g~rliGPNc-G-~~~~---~~-~~~~f~~~--------- 109 (480)
T 3dmy_A 45 AGEYAAELANQALDRNLNVMMFSDNVTLEDEIQLKTRAREKGLLVMGPDC-G-TSMI---AG-TPLAFANV--------- 109 (480)
T ss_dssp CHHHHHHHHHHHHHTTCEEEECCCCCCHHHHHHHHHHHHHTTCCEECSSC-C-EEEE---TT-EEEESCCC---------
T ss_pred CHHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEecCc-c-cccc---CC-ccccccCC---------
Confidence 345556667777777766554211 123334567788888999998766 2 1111 11 11111110
Q ss_pred HHhcCCcEEEEEEEcCCCCcccHHHHHHHHhhcCeEEEEeeccCCCCC---CChhHHHHHHHHHhc-CCceEEEEecCh-
Q 006567 159 VSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESG---VNTGYVMDLLVKVAL-MESRVIVLHVSP- 233 (640)
Q Consensus 159 l~~~~w~~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~---~~~~~~~~~l~~l~~-~~~~vivl~~~~- 233 (640)
+.--+|++|..... ....+...+.+.|+-++....+.-... -...++.+.+..+.+ .+.++|+++...
T Consensus 110 ---~~~G~vaivSqSGa----l~~~i~~~~~~~g~G~S~~Vs~Gn~~l~~~i~dv~~~D~l~~l~~Dp~T~~I~ly~E~~ 182 (480)
T 3dmy_A 110 ---MPEGNIGVIGASGT----GIQELCSQIALAGEGITHAIGLGGRDLSREVGGISALTALEMLSADEKSEVLAFVSKPP 182 (480)
T ss_dssp ---CCEEEEEEEESCSH----HHHHHHHHHHHTTCCEEEEEECCTTTTSTTTTTHHHHHHHHHHHTCTTCCEEEEEESCC
T ss_pred ---CCCCCEEEEeccHH----HHHHHHHHHHHcCCCceEEEEcCCCccccccCCCCHHHHHHHHhcCCCCCEEEEEEecC
Confidence 12247888875543 455666777777776665544432200 045678888888876 468999998742
Q ss_pred --hhHHHHHHHHHHc
Q 006567 234 --SLGFQVFSVAKYL 246 (640)
Q Consensus 234 --~~~~~il~~a~~~ 246 (640)
...+.|+++|++.
T Consensus 183 ~e~~~~~f~~~ar~~ 197 (480)
T 3dmy_A 183 AEAVRLKIVNAMKAT 197 (480)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHhC
Confidence 3347889888764
No 288
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=38.10 E-value=83 Score=22.55 Aligned_cols=42 Identities=14% Similarity=0.082 Sum_probs=31.9
Q ss_pred CChhHHHHHHHHHhcCCceEEEEe--cChhhHHHHHHHHHHcCC
Q 006567 207 VNTGYVMDLLVKVALMESRVIVLH--VSPSLGFQVFSVAKYLGM 248 (640)
Q Consensus 207 ~~~~~~~~~l~~l~~~~~~vivl~--~~~~~~~~il~~a~~~gl 248 (640)
.+..+++++++.+++.+...++.. .+..+...|-.+|++.|.
T Consensus 35 tssqdirdiiksmkdngkplvvfvngasqndvnefqneakkegv 78 (112)
T 2lnd_A 35 TSSQDIRDIIKSMKDNGKPLVVFVNGASQNDVNEFQNEAKKEGV 78 (112)
T ss_dssp CSHHHHHHHHHHHTTCCSCEEEEECSCCHHHHHHHHHHHHHHTC
T ss_pred cchhhHHHHHHHHHhcCCeEEEEecCcccccHHHHHHHHHhcCc
Confidence 357899999999999876555543 566778888889988774
No 289
>3out_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, MURI, cell envelope; HET: MSE DGL; 1.65A {Francisella tularensis subsp}
Probab=38.10 E-value=51 Score=30.78 Aligned_cols=39 Identities=18% Similarity=0.193 Sum_probs=26.0
Q ss_pred HHHHHhHhcCcEEEEcCCChHHHHHHHHhhccC-CceEEe
Q 006567 87 VEALRFMETDIVAIIGPQCSTVAHIVSYVSNEL-QVPLLS 125 (640)
Q Consensus 87 ~~a~~l~~~~v~aiiGp~~s~~~~~v~~~~~~~-~iP~is 125 (640)
+.+..|.++|+.+|+-+-++.++.++..+-+.. ++|+|.
T Consensus 60 ~~~~~L~~~g~~~iVIACNTa~~~al~~lr~~~~~iPvig 99 (268)
T 3out_A 60 QTAKFLIDQEVKAIIIACNTISAIAKDIVQEIAKAIPVID 99 (268)
T ss_dssp HHHHHHHHTTCSEEEECCHHHHHHHHHHHHHHHTTSCEEE
T ss_pred HHHHHHHHCCCCEEEEeCCChHHHHHHHHHHhcCCCCEEe
Confidence 334445566999998764444444556666677 899997
No 290
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Probab=37.94 E-value=50 Score=32.83 Aligned_cols=112 Identities=10% Similarity=-0.014 Sum_probs=66.3
Q ss_pred CcEEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCCCCcccHHHHHHHHhhcCeEEEEeeccCCC-CCCChhHHHHHHH
Q 006567 139 PFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPE-SGVNTGYVMDLLV 217 (640)
Q Consensus 139 ~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~-~~~~~~~~~~~l~ 217 (640)
+|-+...+..... +. +++..+.+++.+|++...+. ...+.+.+.+++.|+.+.... ++.. ...+...+...++
T Consensus 41 ~y~I~~G~g~l~~---l~-~l~~~~~~rvlIVtd~~v~~-~~~~~v~~~L~~~g~~~~~~~-~~~gE~~kt~~~v~~~~~ 114 (390)
T 3okf_A 41 SYPISIGAGLFAN---PA-LLSLSAKQKVVIVTNHTVAP-LYAPAIISLLDHIGCQHALLE-LPDGEQYKTLETFNTVMS 114 (390)
T ss_dssp CEEEEEETTGGGC---GG-GGCCCTTCEEEEEEETTTHH-HHHHHHHHHHHHHTCEEEEEE-ECSSGGGCBHHHHHHHHH
T ss_pred CCCEEEeCCHHHh---HH-HHHhcCCCEEEEEECCcHHH-HHHHHHHHHHHHcCCeEEEEE-ECCCcCCchHHHHHHHHH
Confidence 3445555543322 22 44555778999888665443 367788888888888765322 2222 1134667888888
Q ss_pred HHhcCCc---eEEEEec--ChhhHHHHHHHHHHcCCccCCeEEEEeC
Q 006567 218 KVALMES---RVIVLHV--SPSLGFQVFSVAKYLGMMGNGYVWIATD 259 (640)
Q Consensus 218 ~l~~~~~---~vivl~~--~~~~~~~il~~a~~~gl~~~~~~~i~~~ 259 (640)
.+++.++ +.||-.+ +.-|+..+.......| -.++-|-|.
T Consensus 115 ~l~~~~~~R~d~IIAvGGGsv~D~ak~~Aa~~~rg---ip~I~IPTT 158 (390)
T 3okf_A 115 FLLEHNYSRDVVVIALGGGVIGDLVGFAAACYQRG---VDFIQIPTT 158 (390)
T ss_dssp HHHHTTCCTTCEEEEEESHHHHHHHHHHHHHBTTC---CEEEEEECS
T ss_pred HHHhcCCCcCcEEEEECCcHHhhHHHHHHHHhcCC---CCEEEeCCC
Confidence 8888776 5777654 4455555555444444 346666655
No 291
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=37.59 E-value=45 Score=31.19 Aligned_cols=80 Identities=5% Similarity=-0.078 Sum_probs=50.1
Q ss_pred CCcEEEEEEEc--CCCCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHH---HHHHHhcCCceEEEEecChhhHH
Q 006567 163 GWNAVSVIFVD--NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMD---LLVKVALMESRVIVLHVSPSLGF 237 (640)
Q Consensus 163 ~w~~v~ii~~~--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~---~l~~l~~~~~~vivl~~~~~~~~ 237 (640)
.-.+|+++..+ +.|.....+.+++.+++.|..+..... . .+...... .++.+...+.|.||+...... .
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~----~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~ 80 (290)
T 2rgy_A 7 QLGIIGLFVPTFFGSYYGTILKQTDLELRAVHRHVVVATG-C----GESTPREQALEAVRFLIGRDCDGVVVISHDLH-D 80 (290)
T ss_dssp -CCEEEEECSCSCSHHHHHHHHHHHHHHHHTTCEEEEECC-C----SSSCHHHHHHHHHHHHHHTTCSEEEECCSSSC-H
T ss_pred CCCeEEEEeCCCCCchHHHHHHHHHHHHHHCCCEEEEEeC-C----CchhhhhhHHHHHHHHHhcCccEEEEecCCCC-H
Confidence 34578888743 446667778888889999988764321 1 11233344 677777888999988754322 3
Q ss_pred HHHHHHHHcCC
Q 006567 238 QVFSVAKYLGM 248 (640)
Q Consensus 238 ~il~~a~~~gl 248 (640)
..++.+.+.|+
T Consensus 81 ~~~~~l~~~~i 91 (290)
T 2rgy_A 81 EDLDELHRMHP 91 (290)
T ss_dssp HHHHHHHHHCS
T ss_pred HHHHHHhhcCC
Confidence 45566666554
No 292
>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A
Probab=37.53 E-value=2.3e+02 Score=27.23 Aligned_cols=133 Identities=18% Similarity=0.112 Sum_probs=71.8
Q ss_pred EEEEEEeecCCccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhc--CcEEEEcCCChHHH
Q 006567 32 VNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMET--DIVAIIGPQCSTVA 109 (640)
Q Consensus 32 i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~--~v~aiiGp~~s~~~ 109 (640)
-.|+.+|-..+ ...+.+|+.|+.++ +|..+.+...+++-.-.+.+.-..+.++. .+.++=++ ..
T Consensus 46 k~la~lF~e~S---TRTR~SFE~A~~~L-------Gg~~i~l~~~~ss~~kgEsl~DTarvLs~~~D~IviR~~-~~--- 111 (335)
T 1dxh_A 46 KNIALIFEKTS---TRTRCAFEVAAYDQ-------GANVTYIDPNSSQIGHKESMKDTARVLGRMYDAIEYRGF-KQ--- 111 (335)
T ss_dssp CEEEEEESSCC---HHHHHHHHHHHHHT-------TCEEEEECTTTCCBTTTBCHHHHHHHHHHHCSEEEEECS-CH---
T ss_pred CEEEEEecCCC---cchHHHHHHHHHHc-------CCeEEEECCccccCcCCCcHHHHHHHHHhhCCEEEEecC-Ch---
Confidence 46788887654 35689999999885 34444443333321111112222222222 33333333 22
Q ss_pred HHHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHH---HhcC--C--cEEEEEEEcCCCCcccHH
Q 006567 110 HIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMV---SYYG--W--NAVSVIFVDNEYGRNGVS 182 (640)
Q Consensus 110 ~~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll---~~~~--w--~~v~ii~~~~~~g~~~~~ 182 (640)
..+..++...++|+|.- .+ +..+| .++++|++ +++| . .+++++. |.. ...+.
T Consensus 112 ~~~~~lA~~s~vPVINa-~~-----~~~HP------------tQ~LaDl~Ti~e~~g~~l~gl~va~vG--D~~-~~va~ 170 (335)
T 1dxh_A 112 EIVEELAKFAGVPVFNG-LT-----DEYHP------------TQMLADVLTMREHSDKPLHDISYAYLG--DAR-NNMGN 170 (335)
T ss_dssp HHHHHHHHHSSSCEEEE-EC-----SSCCH------------HHHHHHHHHHHHTCSSCGGGCEEEEES--CCS-SHHHH
T ss_pred hHHHHHHHhCCCCEEcC-CC-----CCCCc------------HHHHHHHHHHHHHcCCCcCCeEEEEec--CCc-cchHH
Confidence 23445556668999973 22 22233 38888864 3455 2 3555553 322 35677
Q ss_pred HHHHHHhhcCeEEEEee
Q 006567 183 ALNDKLAERRCRISYKS 199 (640)
Q Consensus 183 ~~~~~~~~~g~~v~~~~ 199 (640)
.+...+...|.++....
T Consensus 171 Sl~~~~~~~G~~v~~~~ 187 (335)
T 1dxh_A 171 SLLLIGAKLGMDVRIAA 187 (335)
T ss_dssp HHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHcCCEEEEEC
Confidence 77778888888776543
No 293
>4h31_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PE5; 1.70A {Vibrio vulnificus} PDB: 3upd_A*
Probab=37.09 E-value=2.6e+02 Score=27.26 Aligned_cols=133 Identities=18% Similarity=0.085 Sum_probs=70.8
Q ss_pred EEEEEeecCCccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcCcEEEEcCCChHHHHHH
Q 006567 33 NVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTVAHIV 112 (640)
Q Consensus 33 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aiiGp~~s~~~~~v 112 (640)
.|+.+|...+. ..+..|+.|+.++ +|..+.+...++.-.-.+.+.-..+.++.-+++|+--.. ....+
T Consensus 72 ~la~lF~epST---RTR~SFE~A~~~L-------Gg~vi~l~~~~ss~~kgEsl~DTarvLs~~~D~IviR~~--~~~~~ 139 (358)
T 4h31_A 72 NIALIFEKAST---RTRCAFEVAAFDQ-------GAQVTYIGPSGSQIGDKESMKDTARVLGRMYDGIQYRGF--GQAIV 139 (358)
T ss_dssp EEEEEESSCCS---HHHHHHHHHHHHT-------TCEEEEECSSSSCBTTTBCHHHHHHHHHHHCSEEEEECS--CHHHH
T ss_pred EEEEEeCCCCh---hhHHHHHHHHHHc-------CCeEEECCcccccccCccchhHHHHHhhccCceeEeccc--chhHH
Confidence 57888877542 4588999998885 355554433333211111122222223321333332111 12334
Q ss_pred HHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHH---hcCC-----cEEEEEEEcCCCCcccHHHH
Q 006567 113 SYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVS---YYGW-----NAVSVIFVDNEYGRNGVSAL 184 (640)
Q Consensus 113 ~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~---~~~w-----~~v~ii~~~~~~g~~~~~~~ 184 (640)
..++....+|+|. +- ++...| .++++|++. +++. .+|+++. |.. ...+..+
T Consensus 140 ~~la~~s~vPVIN-G~-----g~~~HP------------tQaL~Dl~Ti~e~~~~~~l~gl~ia~vG--D~~-~~va~S~ 198 (358)
T 4h31_A 140 EELGAFAGVPVWN-GL-----TDEFHP------------TQILADFLTMLEHSQGKALADIQFAYLG--DAR-NNVGNSL 198 (358)
T ss_dssp HHHHHHSSSCEEE-SC-----CSSCCH------------HHHHHHHHHHHHTTTTCCGGGCEEEEES--CTT-SHHHHHH
T ss_pred HHhhhhccCceEC-CC-----CcCCCc------------hHHHHHHHHHHHHhcCCCcCceEEEecC--CCC-cccchHH
Confidence 5666777899996 22 222233 388998753 4442 3566553 322 2467777
Q ss_pred HHHHhhcCeEEEEe
Q 006567 185 NDKLAERRCRISYK 198 (640)
Q Consensus 185 ~~~~~~~g~~v~~~ 198 (640)
...+...|.++...
T Consensus 199 ~~~~~~~g~~v~~~ 212 (358)
T 4h31_A 199 MVGAAKMGMDIRLV 212 (358)
T ss_dssp HHHHHHHTCEEEEE
T ss_pred HHHHHhcCceEEEe
Confidence 77788888877654
No 294
>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*
Probab=37.07 E-value=2.8e+02 Score=26.28 Aligned_cols=144 Identities=7% Similarity=-0.083 Sum_probs=85.8
Q ss_pred ChHHHHHHHHHhHhcCcEEE--EcCCCh-HHHHHHHHhhccC-CceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHH
Q 006567 81 SGFIGMVEALRFMETDIVAI--IGPQCS-TVAHIVSYVSNEL-QVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVA 156 (640)
Q Consensus 81 ~~~~a~~~a~~l~~~~v~ai--iGp~~s-~~~~~v~~~~~~~-~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~ 156 (640)
.+..+.+.+.++++.|+.++ +.+.-+ .....+...+... ++.+|.+.+.. +-+.. ....-..|..
T Consensus 80 P~~~~~~~~~e~i~~Gi~~iv~~t~G~~~~~~~~l~~~a~~~~gi~liGPnc~G--ii~p~-~~~~~~~~~~-------- 148 (305)
T 2fp4_A 80 PPPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLRQGKTRLIGPNCPG--VINPG-ECKIGIMPGH-------- 148 (305)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHTTCSSCEEECSSSCE--EEETT-TEEEESSCGG--------
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHhcCCcEEEeCCCCe--Eeccc-ccceeecccc--------
Confidence 45566677777888776653 333322 2344678888888 99999765432 21111 1111122211
Q ss_pred HHHHhcCCcEEEEEEEcCCCCcccHHHHHHHHhhcCeEEEEeeccCCCCCCC-hhHHHHHHHHHhc-CCceEEEEecCh-
Q 006567 157 EMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVN-TGYVMDLLVKVAL-MESRVIVLHVSP- 233 (640)
Q Consensus 157 ~ll~~~~w~~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~-~~~~~~~l~~l~~-~~~~vivl~~~~- 233 (640)
.+.--+|+++..... ....+...+.+.|+-++....+.-. .. ..++.+.++.+.+ .+.++|+++...
T Consensus 149 ----~~~~G~va~vSqSG~----l~~~~~~~~~~~g~G~S~~vs~G~~--~~~~~~~~d~l~~~~~Dp~T~~I~l~~E~~ 218 (305)
T 2fp4_A 149 ----IHKKGRIGIVSRSGT----LTYEAVHQTTQVGLGQSLCVGIGGD--PFNGTDFTDCLEIFLNDPATEGIILIGEIG 218 (305)
T ss_dssp ----GCCEEEEEEEESCSH----HHHHHHHHHHHTTCCEEEEEECCSS--SSCSCCHHHHHHHHHHCTTCCEEEEEEESS
T ss_pred ----CCCCCCEEEEecchH----HHHHHHHHHHhcCCCeeEEeccCCC--cCCCCCHHHHHHHHhcCCCCcEEEEEEecC
Confidence 122347998875543 4556666777777766655444332 21 4567777777765 578999998664
Q ss_pred ----hhHHHHHHHHHH
Q 006567 234 ----SLGFQVFSVAKY 245 (640)
Q Consensus 234 ----~~~~~il~~a~~ 245 (640)
.+++.|++++.+
T Consensus 219 g~~e~~~~~f~~~~~~ 234 (305)
T 2fp4_A 219 GNAEENAAEFLKQHNS 234 (305)
T ss_dssp SSHHHHHHHHHHHHSC
T ss_pred CchhhHHHHHHHHHHH
Confidence 468899987754
No 295
>3gzg_A Molybdate-binding periplasmic protein; permease; molybdate complex, mutant K127S, metal binding protein; 1.55A {Xanthomonas axonopodis PV} PDB: 2h5y_A
Probab=36.80 E-value=16 Score=33.86 Aligned_cols=70 Identities=17% Similarity=0.133 Sum_probs=46.4
Q ss_pred HHHHHHHHHhCCCCccEEEEEcCCCCCCCCHhhHHHHHHcCc-ccEEEeeeeeecc---ccceEE-e-CccccccceEEE
Q 006567 495 IDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGV-FDAVVGDITIVTN---RTKIVD-F-SQPYAASGLVVV 568 (640)
Q Consensus 495 ~dl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~D~~~~~~~~t~~---R~~~vd-f-s~p~~~~~~~il 568 (640)
-++++.+.++.|+++++.+ +....++..+.+|. +|+.+++-....+ +...++ . ..+|....++++
T Consensus 38 ~~l~~~Fe~~~gi~V~~~~---------~~Sg~l~~qi~~g~~~DV~~sa~~~~~~~l~~~gl~~~~~~~~~a~~~lvl~ 108 (253)
T 3gzg_A 38 DEAATAYEKATGTPVRVSY---------AASSALARQIEQGAPADVFLSADLEWMDYLQQHGLVLPAQRHNLLGNTLVLV 108 (253)
T ss_dssp HHHHHHHHHHHSCCEEEEE---------ECHHHHHHHHHTTCCCSEEECSSHHHHHHHHHTTSSCGGGEEEEEEECEEEE
T ss_pred HHHHHHHHHHhCCeEEEEE---------CChHHHHHHHHcCCCceEEEECCHHHHHHHHHCCCcCCCcceeEEeeEEEEE
Confidence 4677888888898866554 45778899999886 9999874321111 112222 1 246777889999
Q ss_pred EecCC
Q 006567 569 VPFRK 573 (640)
Q Consensus 569 ~~~~~ 573 (640)
+++..
T Consensus 109 ~~~~~ 113 (253)
T 3gzg_A 109 APASS 113 (253)
T ss_dssp EETTC
T ss_pred EECCC
Confidence 98865
No 296
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=36.66 E-value=58 Score=30.06 Aligned_cols=78 Identities=5% Similarity=-0.013 Sum_probs=51.7
Q ss_pred CcEEEEEEEc--CCCCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecChhhHHHHHH
Q 006567 164 WNAVSVIFVD--NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFS 241 (640)
Q Consensus 164 w~~v~ii~~~--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~il~ 241 (640)
-++|+++..+ +.|.....+.+++.+++.|..+..... . .+.......++.+...++|.||+.... ...++
T Consensus 8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~----~~~~~~~~~~~~l~~~~~dgiIi~~~~---~~~~~ 79 (277)
T 3e61_A 8 SKLIGLLLPDMSNPFFTLIARGVEDVALAHGYQVLIGNS-D----NDIKKAQGYLATFVSHNCTGMISTAFN---ENIIE 79 (277)
T ss_dssp --CEEEEESCTTSHHHHHHHHHHHHHHHHTTCCEEEEEC-T----TCHHHHHHHHHHHHHTTCSEEEECGGG---HHHHH
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEeC-C----CCHHHHHHHHHHHHhCCCCEEEEecCC---hHHHH
Confidence 3568888753 456667788899999999988765322 1 224455677888888899999997632 33466
Q ss_pred -HHHHcCCc
Q 006567 242 -VAKYLGMM 249 (640)
Q Consensus 242 -~a~~~gl~ 249 (640)
.+.+.|++
T Consensus 80 ~~l~~~~iP 88 (277)
T 3e61_A 80 NTLTDHHIP 88 (277)
T ss_dssp HHHHHC-CC
T ss_pred HHHHcCCCC
Confidence 67776653
No 297
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=36.64 E-value=60 Score=30.09 Aligned_cols=69 Identities=7% Similarity=0.073 Sum_probs=46.9
Q ss_pred HHHhcCCcEEEEEEEc--CCCCcccHHHHHHHHhhcCeE-EEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEec
Q 006567 158 MVSYYGWNAVSVIFVD--NEYGRNGVSALNDKLAERRCR-ISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHV 231 (640)
Q Consensus 158 ll~~~~w~~v~ii~~~--~~~g~~~~~~~~~~~~~~g~~-v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~ 231 (640)
-|+.-+-++|+++..+ +.|.....+.+++.+++.|.. +.... .. .+...-...++.+...+.|.||+..
T Consensus 4 ~L~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~~----~~~~~~~~~~~~l~~~~vdgiIi~~ 75 (277)
T 3hs3_A 4 TLYQKKSKMIGIIIPDLNNRFYAQIIDGIQEVIQKEGYTALISFS-TN----SDVKKYQNAIINFENNNVDGIITSA 75 (277)
T ss_dssp ----CCCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC-SS----CCHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred hhhcCCCCEEEEEeCCCCChhHHHHHHHHHHHHHHCCCCEEEEEe-CC----CChHHHHHHHHHHHhCCCCEEEEcc
Confidence 3444555788988864 556667788899999999988 65432 11 2344556678888888999999886
No 298
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=36.47 E-value=1.2e+02 Score=27.00 Aligned_cols=87 Identities=6% Similarity=-0.044 Sum_probs=57.1
Q ss_pred cEEEEEEEcCCCCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEE--ecCh----hhHHH
Q 006567 165 NAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVL--HVSP----SLGFQ 238 (640)
Q Consensus 165 ~~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl--~~~~----~~~~~ 238 (640)
.++.+-....+...-+..-+...++..|++|.+--. . ......++.+++.++++|.+ .+.. .....
T Consensus 93 ~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~---~-----vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~ 164 (215)
T 3ezx_A 93 GLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGV---D-----VLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKD 164 (215)
T ss_dssp CEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCS---S-----CCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHH
T ss_pred CeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCC---C-----CCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHH
Confidence 355554545666666778888889999999875321 1 12345667777888999999 5332 34567
Q ss_pred HHHHHHHcCCccCCeEEEEeC
Q 006567 239 VFSVAKYLGMMGNGYVWIATD 259 (640)
Q Consensus 239 il~~a~~~gl~~~~~~~i~~~ 259 (640)
++++.++.|+...-.+|++..
T Consensus 165 ~i~~l~~~~~~~~v~v~vGG~ 185 (215)
T 3ezx_A 165 LMDRLNEEKLRDSVKCMFGGA 185 (215)
T ss_dssp HHHHHHHTTCGGGSEEEEESS
T ss_pred HHHHHHHcCCCCCCEEEEECC
Confidence 788888888643345666643
No 299
>2zzv_A ABC transporter, solute-binding protein; periplasmic substrate binding protein, calcium, lactate, trap transporter, transport protein; 1.40A {Thermus thermophilus} PDB: 2zzw_A 2zzx_A
Probab=36.24 E-value=27 Score=34.34 Aligned_cols=63 Identities=16% Similarity=0.115 Sum_probs=44.2
Q ss_pred HHHHHHHHhCCCCccEEEEEcCCCCCCCCHhhHHHHHHcCcccEEEeeeeeeccccceEE-eC-cccc
Q 006567 496 DVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDITIVTNRTKIVD-FS-QPYA 561 (640)
Q Consensus 496 dl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~~~~~~~~t~~R~~~vd-fs-~p~~ 561 (640)
.+.+.+.++.|=+++++..+. +. -+.+.++++.+..|.+|+++........+...+. |+ .||.
T Consensus 54 ~fa~~v~e~t~G~v~i~v~~~--g~-Lg~~~~~~e~v~~G~id~~~~~~~~~~~~~p~~~~~~~lP~~ 118 (361)
T 2zzv_A 54 KFTERVKELTDGQLEVQPFPA--GA-VVGTFDMFDAVKTGVLDGMNPFTLYWAGRMPVTAFLSSYALG 118 (361)
T ss_dssp HHHHHHHHHTTTSEEEEEECT--TS-SSCGGGHHHHHHHTSSSEEECBGGGGTTTCGGGGGSSCCTTS
T ss_pred HHHHHHHHhcCCeEEEEEeCC--Cc-ccCHHHHHHHHHcCceeEEEeccccccccCcHHHHHhcCCCC
Confidence 466788888886755666552 11 1368999999999999999887777766655544 33 5654
No 300
>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*
Probab=36.18 E-value=3e+02 Score=26.45 Aligned_cols=133 Identities=14% Similarity=0.084 Sum_probs=72.8
Q ss_pred EEEEEEeecCCccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcCcEEEEc-CCChHHHH
Q 006567 32 VNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIG-PQCSTVAH 110 (640)
Q Consensus 32 i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aiiG-p~~s~~~~ 110 (640)
-.|+.+|-..+ ...+.+|+.|+.++ +|..+.+...+++-.-.+.+.-..+.++.-+++|+- ......
T Consensus 45 k~la~lF~e~S---TRTR~SFE~A~~~L-------Gg~~i~l~~~~ss~~kgEsl~DTarvLs~~~D~IviR~~~~~~-- 112 (333)
T 1duv_G 45 KNIALIFEKDS---TRTRCSFEVAAYDQ-------GARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGYGQEI-- 112 (333)
T ss_dssp CEEEEEESSCC---SHHHHHHHHHHHHT-------TCEEEEECSSSSCBTTTBCHHHHHHHHTTTCSEEEEECSCHHH--
T ss_pred CEEEEEecCCC---ccHHHHHHHHHHHc-------CCeEEEECCccccCcCCCcHHHHHHHHHHhCCEEEEEcCCchH--
Confidence 46788887654 24688999999885 345455433333321122233333344443444442 222333
Q ss_pred HHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHH---Hh-cC--C--cEEEEEEEcCCCCcccHH
Q 006567 111 IVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMV---SY-YG--W--NAVSVIFVDNEYGRNGVS 182 (640)
Q Consensus 111 ~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll---~~-~~--w--~~v~ii~~~~~~g~~~~~ 182 (640)
+..++...++|+|.- . + +..+| .++++|++ ++ +| . .+++++. |.. ...+.
T Consensus 113 -~~~lA~~~~vPVINa-~-~----~~~HP------------tQ~LaDl~Ti~e~~~g~~l~gl~ia~vG--D~~-~~va~ 170 (333)
T 1duv_G 113 -VETLAEYASVPVWNG-L-T----NEFHP------------TQLLADLLTMQEHLPGKAFNEMTLVYAG--DAR-NNMGN 170 (333)
T ss_dssp -HHHHHHHHSSCEEES-C-C----SSCCH------------HHHHHHHHHHHHHSTTCCGGGCEEEEES--CTT-SHHHH
T ss_pred -HHHHHHhCCCCeEcC-C-C----CCCCc------------hHHHHHHHHHHHHhcCCCCCCcEEEEEC--CCc-cchHH
Confidence 344455558999972 2 2 22234 38888863 35 55 3 3555553 322 35677
Q ss_pred HHHHHHhhcCeEEEEe
Q 006567 183 ALNDKLAERRCRISYK 198 (640)
Q Consensus 183 ~~~~~~~~~g~~v~~~ 198 (640)
.+...+...|.++...
T Consensus 171 Sl~~~~~~~G~~v~~~ 186 (333)
T 1duv_G 171 SMLEAAALTGLDLRLV 186 (333)
T ss_dssp HHHHHHHHHCCEEEEE
T ss_pred HHHHHHHHcCCEEEEE
Confidence 7777777788877654
No 301
>3ojc_A Putative aspartate/glutamate racemase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 1.75A {Yersinia pestis}
Probab=36.04 E-value=24 Score=32.20 Aligned_cols=37 Identities=14% Similarity=0.183 Sum_probs=21.6
Q ss_pred HHHHhHhcCcEEEEcCCChHHHHHHHHhhccCCceEEe
Q 006567 88 EALRFMETDIVAIIGPQCSTVAHIVSYVSNELQVPLLS 125 (640)
Q Consensus 88 ~a~~l~~~~v~aiiGp~~s~~~~~v~~~~~~~~iP~is 125 (640)
.+..|.+.|+.+|+-+-++... .+..+-...++|+++
T Consensus 68 ~~~~L~~~g~~~iviaCNTa~~-~~~~l~~~~~iPvi~ 104 (231)
T 3ojc_A 68 AAISLKHAGAEVIVVCTNTMHK-VADDIEAACGLPLLH 104 (231)
T ss_dssp HHHHHHHHTCCEEEECSSGGGG-GHHHHHHHHCSCBCC
T ss_pred HHHHHHhcCCCEEEEeCCchHH-HHHHHHHhCCCCEec
Confidence 3444445599988876555332 224444455788775
No 302
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=35.80 E-value=1.8e+02 Score=25.67 Aligned_cols=86 Identities=7% Similarity=-0.059 Sum_probs=55.8
Q ss_pred cEEEEEEEcCCCCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecCh----hhHHHHH
Q 006567 165 NAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP----SLGFQVF 240 (640)
Q Consensus 165 ~~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~----~~~~~il 240 (640)
.+|.+.....+...-+..-+...++..|+++..-.. . ......+..+++.++++|.+.+.. .....++
T Consensus 89 ~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~---~-----vp~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i 160 (210)
T 1y80_A 89 GKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGV---D-----IEPGKFVEAVKKYQPDIVGMSALLTTTMMNMKSTI 160 (210)
T ss_dssp CEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCS---S-----BCHHHHHHHHHHHCCSEEEEECCSGGGTHHHHHHH
T ss_pred CEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCC---C-----CCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHH
Confidence 366655556666666778888889999998874321 1 123445556666789999987542 4567778
Q ss_pred HHHHHcCCccCCeEEEEe
Q 006567 241 SVAKYLGMMGNGYVWIAT 258 (640)
Q Consensus 241 ~~a~~~gl~~~~~~~i~~ 258 (640)
+..++.++...-.++++.
T Consensus 161 ~~l~~~~~~~~~~v~vGG 178 (210)
T 1y80_A 161 DALIAAGLRDRVKVIVGG 178 (210)
T ss_dssp HHHHHTTCGGGCEEEEES
T ss_pred HHHHhcCCCCCCeEEEEC
Confidence 888887764334456654
No 303
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=35.00 E-value=1.1e+02 Score=29.11 Aligned_cols=80 Identities=5% Similarity=-0.023 Sum_probs=51.1
Q ss_pred CcEEEEEEEc-CCCCcccHHHHHHHHhhc-CeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecChh-hHHHHH
Q 006567 164 WNAVSVIFVD-NEYGRNGVSALNDKLAER-RCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPS-LGFQVF 240 (640)
Q Consensus 164 w~~v~ii~~~-~~~g~~~~~~~~~~~~~~-g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~-~~~~il 240 (640)
-.+|+++..+ +.|.......+++.+++. |+.+..... . .+.......++.+...++|.||+..... .....+
T Consensus 6 ~~~Igvi~~~~~~~~~~~~~gi~~~a~~~~g~~l~i~~~-~----~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~ 80 (325)
T 2x7x_A 6 HFRIGVAQCSDDSWRHKMNDEILREAMFYNGVSVEIRSA-G----DDNSKQAEDVHYFMDEGVDLLIISANEAAPMTPIV 80 (325)
T ss_dssp CCEEEEEESCCSHHHHHHHHHHHHHHTTSSSCEEEEEEC-T----TCHHHHHHHHHHHHHTTCSEEEECCSSHHHHHHHH
T ss_pred CeEEEEEecCCCHHHHHHHHHHHHHHHHcCCcEEEEeCC-C----CCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHH
Confidence 3578887754 334445667788888888 888765431 1 2234455667777788899998875433 334567
Q ss_pred HHHHHcCC
Q 006567 241 SVAKYLGM 248 (640)
Q Consensus 241 ~~a~~~gl 248 (640)
+.+.+.|+
T Consensus 81 ~~~~~~~i 88 (325)
T 2x7x_A 81 EEAYQKGI 88 (325)
T ss_dssp HHHHHTTC
T ss_pred HHHHHCCC
Confidence 77776664
No 304
>4edp_A ABC transporter, substrate-binding protein; clostridium PERF ATCC 13124, center for structural genomics of infectious DI csgid; 1.85A {Clostridium perfringens}
Probab=34.64 E-value=18 Score=35.00 Aligned_cols=37 Identities=8% Similarity=0.124 Sum_probs=19.0
Q ss_pred CCeeEEEEEEeecCCccchHHHHHHHHHHHHHhccCCCCCCcEEEEEE
Q 006567 28 RPAVVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITM 75 (640)
Q Consensus 28 ~~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~ 75 (640)
.+++|+|..- . .......+-.++++++.. |++++++.
T Consensus 33 ~~~~l~v~~~---~----~~~~~~~~~~~~~f~~~~----gi~V~~~~ 69 (351)
T 4edp_A 33 AGKKLVVSTW---G----LNEDVLKETVFEPFAKEH----GVEIVLDI 69 (351)
T ss_dssp ---CEEEEEC---C----TTHHHHHHHTHHHHHHHH----TCCEEEEE
T ss_pred CCCeEEEEEc---c----CcHHHHHHHHHHHHHHHH----CCEEEEEe
Confidence 3456777432 1 123445556667777664 56677664
No 305
>4gd5_A Phosphate ABC transporter, phosphate-binding PROT; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.70A {Clostridium perfringens}
Probab=34.54 E-value=42 Score=31.47 Aligned_cols=51 Identities=8% Similarity=0.019 Sum_probs=35.6
Q ss_pred CCHhhHHHHHHcCcccEEEeeeeeeccccceEEeCccccccceEEEEecCC
Q 006567 523 PSYTQLVDSITTGVFDAVVGDITIVTNRTKIVDFSQPYAASGLVVVVPFRK 573 (640)
Q Consensus 523 ~~~~~~~~~l~~~~~D~~~~~~~~t~~R~~~vdfs~p~~~~~~~il~~~~~ 573 (640)
+...+.+.++.+|.+|++.++-.++.+..+.---..|+...++++++.+..
T Consensus 72 ~GSg~g~~~~~~G~~di~~as~~~~~~e~~~~~~~~~ia~d~~~vivn~~n 122 (279)
T 4gd5_A 72 IGSSAGIKNAMEGVSEIGMASRDLKGEEKQAGLKEVEIAYDGIALITHKNN 122 (279)
T ss_dssp CCHHHHHHHHHHTSSSEEEESSCCCHHHHTTCCEEEEEEEEEEEEEEETTC
T ss_pred CCcHHHHHHHHcCCCcEEEecchhhhhHhhcCceEEEEEeeceeeeeccCC
Confidence 447778899999999999876655543222111236788889999988665
No 306
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=34.40 E-value=55 Score=33.28 Aligned_cols=97 Identities=11% Similarity=0.008 Sum_probs=61.8
Q ss_pred HHHHHHHHhcCCcEEEEEEEcCCCCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEec-
Q 006567 153 TAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHV- 231 (640)
Q Consensus 153 ~al~~ll~~~~w~~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~- 231 (640)
..+.++++.++.+++.+|++..... ...+.+.+.+++.|+.+... .+... ...+.+....+.+++ ++|.||-.+
T Consensus 80 ~~l~~~l~~~g~~rvlIVtd~~~~~-~~~~~v~~~L~~~gi~~~~~-~~~ge--~~~~~v~~~~~~~~~-~~D~IIAvGG 154 (450)
T 1ta9_A 80 TRSYMYVKKWATKSAVVLADQNVWN-ICANKIVDSLSQNGMTVTKL-VFGGE--ASLVELDKLRKQCPD-DTQVIIGVGG 154 (450)
T ss_dssp GGHHHHHTTTCSSEEEEEEEHHHHH-HTHHHHHHHHHHTTCEEEEE-EECSC--CCHHHHHHHHTTSCT-TCCEEEEEES
T ss_pred HHHHHHHHhcCCCEEEEEECccHHH-HHHHHHHHHHHHCCCeEEEE-eeCCC--CCHHHHHHHHHHHhh-CCCEEEEeCC
Confidence 3456677777866999888654332 36778888888888877432 23322 345677777777777 899988664
Q ss_pred -ChhhHHHHHHHHHHcCCccCCeEEEEeC
Q 006567 232 -SPSLGFQVFSVAKYLGMMGNGYVWIATD 259 (640)
Q Consensus 232 -~~~~~~~il~~a~~~gl~~~~~~~i~~~ 259 (640)
+.-|+..++.. ..+ ..++-|-|.
T Consensus 155 GSviD~AK~iA~--~~g---iP~I~IPTT 178 (450)
T 1ta9_A 155 GKTMDSAKYIAH--SMN---LPSIICPTT 178 (450)
T ss_dssp HHHHHHHHHHHH--HTT---CCEEEEESS
T ss_pred cHHHHHHHHHHH--hcC---CCEEEEeCC
Confidence 44556655542 223 356666654
No 307
>1nrz_A PTS system, sorbose-specific IIB component; beta sheet core, flanking helices, right handed beta-alpha-B crossover, transferase; 1.75A {Klebsiella pneumoniae} SCOP: c.38.1.1
Probab=34.39 E-value=80 Score=26.88 Aligned_cols=81 Identities=9% Similarity=0.044 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhcCCcEEEEEEEcCCCCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEe
Q 006567 151 QMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLH 230 (640)
Q Consensus 151 ~~~al~~ll~~~~w~~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~ 230 (640)
+++....+.++++.+++.++- |........+.+.+.+.-.|+++.... .++....+.+-+..+.++++++
T Consensus 14 HGQV~t~W~k~~~~~~IiVvn-D~vA~D~~~k~~lk~a~P~gvk~~i~s---------ve~ai~~~~~~~~~~~~v~ll~ 83 (164)
T 1nrz_A 14 HGQVTTVWSKVANAQRIIICN-DDVFNDEVRRTLLRQAAPPGMKVNVVS---------LEKAVAVYHNPQYQDETVFYLF 83 (164)
T ss_dssp CHHHHHHHHHHHTCSEEEEEC-HHHHTCHHHHHHHHHTCCTTCEEEEEC---------HHHHHHHHTCGGGTTCEEEEEE
T ss_pred chhheeeeccccCCCEEEEeC-ccccCCHHHHHHHHhcCCCCCeEEEEE---------HHHHHHHHhcccCCCceEEEEE
Confidence 578888999999999997663 433333455566565555677765331 3444455555445678899999
Q ss_pred cChhhHHHHHH
Q 006567 231 VSPSLGFQVFS 241 (640)
Q Consensus 231 ~~~~~~~~il~ 241 (640)
-++.++..+++
T Consensus 84 k~p~d~~~lve 94 (164)
T 1nrz_A 84 TNPHDVLTMVR 94 (164)
T ss_dssp SSHHHHHHHHT
T ss_pred CCHHHHHHHHH
Confidence 99998887753
No 308
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=33.97 E-value=3.1e+02 Score=25.94 Aligned_cols=116 Identities=14% Similarity=0.025 Sum_probs=67.8
Q ss_pred EEEEEEeecC-CccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcC-cEEEEcCCChHHH
Q 006567 32 VNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETD-IVAIIGPQCSTVA 109 (640)
Q Consensus 32 i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~-v~aiiGp~~s~~~ 109 (640)
=+||++.... .........|++.|+++. |.. .+......+...+.+++.+++..+ +.||+...+ ..+
T Consensus 175 ~~I~~i~~~~~~~~~~~R~~Gf~~al~~~--------g~~--~~~~~~~~~~~~~~~~~~~ll~~~~~~ai~~~nd-~~A 243 (333)
T 3jvd_A 175 MNIAALVGEESLSTTQERMRGISHAASIY--------GAE--VTFHFGHYSVESGEEMAQVVFNNGLPDALIVASP-RLM 243 (333)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHT--------TCE--EEEEECCSSHHHHHHHHHHHHHTCCCSEEEECCH-HHH
T ss_pred CeEEEEeCCCCCccHHHHHHHHHHHHHHC--------CCC--EEEecCCCCHHHHHHHHHHHhcCCCCcEEEECCH-HHH
Confidence 4678877653 223445678888888774 223 222214456777777888888764 789997443 334
Q ss_pred HHHHHhhccCC------ceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHH
Q 006567 110 HIVSYVSNELQ------VPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVS 160 (640)
Q Consensus 110 ~~v~~~~~~~~------iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~ 160 (640)
..+...+.+.+ |.++++... .+.....|.+-.+..+...+++..+++|.
T Consensus 244 ~g~~~al~~~G~~vP~disvig~D~~--~~~~~~~p~lttv~~~~~~~g~~Av~~L~ 298 (333)
T 3jvd_A 244 AGVMRAFTRLNVRVPHDVVIGGYDDP--EWYSFVGAGITTFVPPHEEMGKEAVRLLV 298 (333)
T ss_dssp HHHHHHHHHTTCCTTTTCEEEEESCC--GGGGGSTTSCEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCceEEEEECCh--HHHHhcCCCceEEecCHHHHHHHHHHHHH
Confidence 34444444443 336665322 23332235556666777888888888654
No 309
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=33.56 E-value=84 Score=27.02 Aligned_cols=48 Identities=17% Similarity=0.109 Sum_probs=35.1
Q ss_pred cHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhc-CCceEEEEec
Q 006567 180 GVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVAL-MESRVIVLHV 231 (640)
Q Consensus 180 ~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~vivl~~ 231 (640)
.-..+.+.+++.|+++.....++.+ ...+...+.+..+ .++|+|+..+
T Consensus 41 ng~~L~~~L~~~G~~v~~~~iV~Dd----~~~i~~al~~~~a~~~~DlVittG 89 (178)
T 3iwt_A 41 SGDIIKQLLIENGHKIIGYSLVPDD----KIKILKAFTDALSIDEVDVIISTG 89 (178)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEECSC----HHHHHHHHHHHHTCTTCCEEEEES
T ss_pred hHHHHHHHHHHCCCEEEEEEEeCCC----HHHHHHHHHHHHhcCCCCEEEecC
Confidence 3456888899999999877777644 6667777776554 5689888874
No 310
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=33.53 E-value=52 Score=32.98 Aligned_cols=83 Identities=14% Similarity=0.120 Sum_probs=52.4
Q ss_pred HHHHHHhcCCcEEEEEEEcCCCCc-ccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEec--
Q 006567 155 VAEMVSYYGWNAVSVIFVDNEYGR-NGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHV-- 231 (640)
Q Consensus 155 l~~ll~~~~w~~v~ii~~~~~~g~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~-- 231 (640)
+.++++ ++ +++.+|+++..... ...+.+.+.++ |+++..-....++ .+.......++.+++.++|.||-.+
T Consensus 43 l~~~l~-~g-~r~liVtd~~~~~~~g~~~~v~~~L~--g~~~~~f~~v~~~--p~~~~v~~~~~~~~~~~~D~IIavGGG 116 (408)
T 1oj7_A 43 LREQIP-HD-ARVLITYGGGSVKKTGVLDQVLDALK--GMDVLEFGGIEPN--PAYETLMNAVKLVREQKVTFLLAVGGG 116 (408)
T ss_dssp HHHHSC-TT-CEEEEEECSSHHHHHSHHHHHHHHTT--TSEEEEECCCCSS--CBHHHHHHHHHHHHHHTCCEEEEEESH
T ss_pred HHHHHh-cC-CEEEEEECCchhhhccHHHHHHHHhC--CCEEEEeCCcCCC--cCHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 455666 67 89988874432222 24667777775 6665432223333 4577788888888989999988663
Q ss_pred ChhhHHHHHHHH
Q 006567 232 SPSLGFQVFSVA 243 (640)
Q Consensus 232 ~~~~~~~il~~a 243 (640)
+.-|+..++...
T Consensus 117 sviD~AK~iA~~ 128 (408)
T 1oj7_A 117 SVLDGTKFIAAA 128 (408)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 455666665544
No 311
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=33.52 E-value=1.2e+02 Score=28.10 Aligned_cols=79 Identities=10% Similarity=-0.010 Sum_probs=50.7
Q ss_pred CCcEEEEEEE--cCCCCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecChhhHHHHH
Q 006567 163 GWNAVSVIFV--DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVF 240 (640)
Q Consensus 163 ~w~~v~ii~~--~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~il 240 (640)
+-.+|+++.. ++.|.....+.+++.+++.|..+..... . .+.......++.+...+.|.||+...... ...+
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~ 80 (285)
T 3c3k_A 7 KTGMLLVMVSNIANPFCAAVVKGIEKTAEKNGYRILLCNT---E--SDLARSRSCLTLLSGKMVDGVITMDALSE-LPEL 80 (285)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC---T--TCHHHHHHHTHHHHTTCCSEEEECCCGGG-HHHH
T ss_pred CCCEEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEeC---C--CCHHHHHHHHHHHHhCCCCEEEEeCCCCC-hHHH
Confidence 3457888875 3456667778888889999988765421 1 22344456677888888999988754322 2345
Q ss_pred HHHHHcCC
Q 006567 241 SVAKYLGM 248 (640)
Q Consensus 241 ~~a~~~gl 248 (640)
+.+. .|.
T Consensus 81 ~~l~-~~i 87 (285)
T 3c3k_A 81 QNII-GAF 87 (285)
T ss_dssp HHHH-TTS
T ss_pred HHHh-cCC
Confidence 5555 553
No 312
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=33.41 E-value=70 Score=27.23 Aligned_cols=62 Identities=16% Similarity=0.093 Sum_probs=41.7
Q ss_pred cEEEEEEEcCCC--C---cccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEec
Q 006567 165 NAVSVIFVDNEY--G---RNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHV 231 (640)
Q Consensus 165 ~~v~ii~~~~~~--g---~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~ 231 (640)
.+++||...|+- | ......+.+.+++.|.++.....++ .+ ..+...+++..+.++|+||..+
T Consensus 8 ~rv~ii~tGdEl~~G~i~Dsn~~~l~~~l~~~G~~v~~~~iv~----Dd-~~i~~al~~a~~~~~DlVittG 74 (164)
T 3pzy_A 8 RSARVIIASTRASSGEYEDRCGPIITEWLAQQGFSSAQPEVVA----DG-SPVGEALRKAIDDDVDVILTSG 74 (164)
T ss_dssp CEEEEEEECHHHHC----CCHHHHHHHHHHHTTCEECCCEEEC----SS-HHHHHHHHHHHHTTCSEEEEES
T ss_pred CEEEEEEECCCCCCCceeeHHHHHHHHHHHHCCCEEEEEEEeC----CH-HHHHHHHHHHHhCCCCEEEECC
Confidence 468887765431 1 2345677888888998877554443 34 6677777777656789998873
No 313
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=33.37 E-value=34 Score=32.23 Aligned_cols=80 Identities=8% Similarity=-0.041 Sum_probs=52.1
Q ss_pred cEEEEEEEc--CCCCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecCh-hhHHHHHH
Q 006567 165 NAVSVIFVD--NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP-SLGFQVFS 241 (640)
Q Consensus 165 ~~v~ii~~~--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~-~~~~~il~ 241 (640)
.+|+++..+ +.|.......+++.+++.|+.+.....-.. .+.......++.+...++|.||+.... ......++
T Consensus 6 ~~Igvi~~~~~~~~~~~~~~g~~~~a~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~ 82 (304)
T 3o1i_D 6 EKICAIYPHLKDSYWLSVNYGMVSEAEKQGVNLRVLEAGGY---PNKSRQEQQLALCTQWGANAIILGTVDPHAYEHNLK 82 (304)
T ss_dssp CEEEEEESCSCSHHHHHHHHHHHHHHHHHTCEEEEEECSST---TCHHHHHHHHHHHHHHTCSEEEECCSSTTSSTTTHH
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCeEEEEcCCCC---CCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHH
Confidence 478888753 456667778888899999988775432211 134455667777878889998887433 32244566
Q ss_pred HHHHcCC
Q 006567 242 VAKYLGM 248 (640)
Q Consensus 242 ~a~~~gl 248 (640)
.+. .|+
T Consensus 83 ~~~-~~i 88 (304)
T 3o1i_D 83 SWV-GNT 88 (304)
T ss_dssp HHT-TTS
T ss_pred HHc-CCC
Confidence 665 554
No 314
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=32.87 E-value=69 Score=30.64 Aligned_cols=79 Identities=8% Similarity=-0.055 Sum_probs=51.5
Q ss_pred cEEEEEEEc--CCCCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCC--ceEEEEecCh-hhHHHH
Q 006567 165 NAVSVIFVD--NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALME--SRVIVLHVSP-SLGFQV 239 (640)
Q Consensus 165 ~~v~ii~~~--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~vivl~~~~-~~~~~i 239 (640)
.+|+++..+ +.|.......+++.+++.|+.+..... . .+.......++.+...+ .|.||+.... ......
T Consensus 6 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~l~~~~~---~--~~~~~~~~~i~~l~~~~~~vdgiIi~~~~~~~~~~~ 80 (332)
T 2rjo_A 6 TTLACSFRSLTNPYYTAFNKGAQSFAKSVGLPYVPLTT---E--GSSEKGIADIRALLQKTGGNLVLNVDPNDSADARVI 80 (332)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHHTCCEEEEEC---T--TCHHHHHHHHHHHHHHTTTCEEEEECCSSHHHHHHH
T ss_pred cEEEEEecCCCcHHHHHHHHHHHHHHHHcCCEEEEecC---C--CCHHHHHHHHHHHHHCCCCCCEEEEeCCCHHHHHHH
Confidence 468888753 456666778888888889988765421 1 22344456677777778 9998887543 333456
Q ss_pred HHHHHHcCC
Q 006567 240 FSVAKYLGM 248 (640)
Q Consensus 240 l~~a~~~gl 248 (640)
++.+.+.|+
T Consensus 81 ~~~~~~~~i 89 (332)
T 2rjo_A 81 VEACSKAGA 89 (332)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHCCC
Confidence 777776654
No 315
>2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis}
Probab=32.80 E-value=39 Score=32.20 Aligned_cols=90 Identities=14% Similarity=0.001 Sum_probs=52.1
Q ss_pred CeEEEEeecCCCccceEEeecCCcceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHhhHH--HHHHcCccc---E
Q 006567 465 KLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLV--DSITTGVFD---A 539 (640)
Q Consensus 465 ~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~D---~ 539 (640)
+++++.++ |.| .+...-+.-.+.+.+.++||.++.++..+ -..|.+ ..+.+++.| +
T Consensus 8 ~pi~~ivp----~~~-------GG~~D~~aR~la~~l~~~lg~~vvV~n~~--------Ga~g~ig~~~v~~a~~DGytl 68 (301)
T 2qpq_A 8 KPLDIIVT----FPP-------GGGTDMLARLIGNYLTESLGQTAVVENRP--------GASGNVGARLVADRAPDGYSL 68 (301)
T ss_dssp SCEEEEES----SCT-------TSHHHHHHHHHHHHHHHGGGSCEEEEECC--------TGGGHHHHHHHHTSCSSSSEE
T ss_pred CCEEEEEc----cCC-------CcHHHHHHHHHHHHHHHHhCCCEEEEECC--------ChhHHHHHHHHHhCCCCCcEE
Confidence 56777663 444 34444555567788888899884444433 266777 458888998 6
Q ss_pred EEeeee-e-eccccceEEe------C--ccccccceEEEEecCC
Q 006567 540 VVGDIT-I-VTNRTKIVDF------S--QPYAASGLVVVVPFRK 573 (640)
Q Consensus 540 ~~~~~~-~-t~~R~~~vdf------s--~p~~~~~~~il~~~~~ 573 (640)
.++... + ++.+.+...| + ..+......+++++..
T Consensus 69 ~~~~~~~~~~~~~~~~~~yd~~~d~~pv~~~~~~~~~lvv~~~s 112 (301)
T 2qpq_A 69 LMVNSSFAVNPGVFRNLPFDPKKDFAAVINVAYVPSVFVVPAGS 112 (301)
T ss_dssp EEEETHHHHHHHHCTTCSSCTTTTEEEEEEEEEEEEEEEEETTC
T ss_pred EEeCCHHHHHHHhccCCCCCchhcchhhhehhcCCeEEEEeCCC
Confidence 654321 1 3333333333 1 1244567778887665
No 316
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=32.49 E-value=1.2e+02 Score=29.21 Aligned_cols=74 Identities=9% Similarity=-0.053 Sum_probs=46.4
Q ss_pred cEEEEEEEcCCCCc-ccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecChhhHHHHHHHH
Q 006567 165 NAVSVIFVDNEYGR-NGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSVA 243 (640)
Q Consensus 165 ~~v~ii~~~~~~g~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~il~~a 243 (640)
+++.+|+. ...|. ..+..+.+.+++.|+.+.....-. ..+.....++....+.|.||..+.......+++.+
T Consensus 30 ~~~~vi~N-p~sg~~~~~~~i~~~l~~~g~~~~~~~t~~------~~~~~~~~~~~~~~~~d~vvv~GGDGTl~~v~~~l 102 (332)
T 2bon_A 30 PASLLILN-GKSTDNLPLREAIMLLREEGMTIHVRVTWE------KGDAARYVEEARKFGVATVIAGGGDGTINEVSTAL 102 (332)
T ss_dssp CCEEEEEC-SSSTTCHHHHHHHHHHHTTTCCEEEEECCS------TTHHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHH
T ss_pred ceEEEEEC-CCCCCCchHHHHHHHHHHcCCcEEEEEecC------cchHHHHHHHHHhcCCCEEEEEccchHHHHHHHHH
Confidence 57887773 22222 445677788888888776544322 22334444555555688888887777777888777
Q ss_pred HH
Q 006567 244 KY 245 (640)
Q Consensus 244 ~~ 245 (640)
.+
T Consensus 103 ~~ 104 (332)
T 2bon_A 103 IQ 104 (332)
T ss_dssp HH
T ss_pred hh
Confidence 64
No 317
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}
Probab=32.44 E-value=2.9e+02 Score=25.95 Aligned_cols=51 Identities=20% Similarity=0.259 Sum_probs=38.8
Q ss_pred EEccCCCChHHHHH-HHHHhHhc-CcEEEEcCCChHHHHHHHHhhccCCceEE
Q 006567 74 TMQSSNCSGFIGMV-EALRFMET-DIVAIIGPQCSTVAHIVSYVSNELQVPLL 124 (640)
Q Consensus 74 ~~~D~~~~~~~a~~-~a~~l~~~-~v~aiiGp~~s~~~~~v~~~~~~~~iP~i 124 (640)
...|+=|....--+ ++.++..+ .+..|+|...|..+..+..+|...+.|..
T Consensus 187 ~~~~tIC~AT~~RQ~av~~la~~~D~miVVGg~nSSNT~rL~eia~~~~~~ty 239 (297)
T 3dnf_A 187 KVINTICNATSLRQESVKKLAPEVDVMIIIGGKNSGNTRRLYYISKELNPNTY 239 (297)
T ss_dssp EEECCCCSHHHHHHHHHHHHGGGSSEEEEESCTTCHHHHHHHHHHHHHCSSEE
T ss_pred CCCCCccHHHHHHHHHHHHHHhhCCEEEEECCCCCchhHHHHHHHHhcCCCEE
Confidence 46788777655444 44455554 78899999999999999999999888754
No 318
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=32.39 E-value=66 Score=30.33 Aligned_cols=79 Identities=10% Similarity=0.048 Sum_probs=50.5
Q ss_pred cEEEEEEEc--CCCCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecChhh-HHHHHH
Q 006567 165 NAVSVIFVD--NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSL-GFQVFS 241 (640)
Q Consensus 165 ~~v~ii~~~--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~-~~~il~ 241 (640)
.+|+++..+ +.|.......+++.+++.|..+..... . .+.......++.+...++|.||+...... ....++
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~l~~~~~---~--~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~ 77 (306)
T 2vk2_A 3 LTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADG---Q--QKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLK 77 (306)
T ss_dssp CEEEEEECCCCSHHHHHHHHHHHHHHHHHTCEEEEEEC---T--TCHHHHHHHHHHHHHHTCSEEEECCSSSSSCHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEeCC---C--CCHHHHHHHHHHHHHcCCCEEEEeCCChhhHHHHHH
Confidence 467777753 445566677888888889988765421 1 12344456677777778999888754322 245666
Q ss_pred HHHHcCC
Q 006567 242 VAKYLGM 248 (640)
Q Consensus 242 ~a~~~gl 248 (640)
.+.+.|+
T Consensus 78 ~~~~~~i 84 (306)
T 2vk2_A 78 EAKDAEI 84 (306)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 6766664
No 319
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A*
Probab=32.35 E-value=79 Score=29.83 Aligned_cols=69 Identities=10% Similarity=0.045 Sum_probs=42.9
Q ss_pred HHHHHHHh-CCCCccEEEEEcCCCCCCCCHhhHHHHHHcCcccEEEeeeeeec-c------------ccceEEeCccccc
Q 006567 497 VFTAAVNL-LPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDITIVT-N------------RTKIVDFSQPYAA 562 (640)
Q Consensus 497 l~~~i~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~~~~~~~~t~-~------------R~~~vdfs~p~~~ 562 (640)
+.+.+.++ .|.+ +++.+. +....++..|.+|++|+++....... . +.+.+.+-.++..
T Consensus 39 la~~~~~~~~g~~--v~v~~~------~~~~~~~~~l~~g~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 110 (314)
T 1us5_A 39 IAKLVNDANVGIR--ANARST------GGSVANINAINAGEFEMALAQNDIAYYAYQGCCIPAFEGKPVKTIRALAALYP 110 (314)
T ss_dssp HHHHHHHHTSSEE--EEEECC------SCHHHHHHHHHTTSCSEEEEEHHHHHHHHHTCSSTTTTTCCCTTEEEEEEEEE
T ss_pred HHHHHHhcCCCce--EEEEec------CcHHHHHHHHHcCCCcEEEEccHhHHHHhcCCCCCCCCCCCccchhehhhcCc
Confidence 44555554 5766 555432 45788999999999999876543211 0 1133444346677
Q ss_pred cceEEEEecCC
Q 006567 563 SGLVVVVPFRK 573 (640)
Q Consensus 563 ~~~~il~~~~~ 573 (640)
....+++++..
T Consensus 111 ~~~~lvv~~~~ 121 (314)
T 1us5_A 111 EVVHVVARKDA 121 (314)
T ss_dssp EEEEEEEETTS
T ss_pred ceEEEEEECCC
Confidence 78888888654
No 320
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=32.07 E-value=1.6e+02 Score=27.71 Aligned_cols=112 Identities=13% Similarity=0.072 Sum_probs=59.3
Q ss_pred eEEEEEEeecCCccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcCcEEEEcCCChHHH-
Q 006567 31 VVNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTVA- 109 (640)
Q Consensus 31 ~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aiiGp~~s~~~- 109 (640)
.-+||+++..+..........++.+.+. .|.++......+..+. ..+.+.+..++.+++.+.+....
T Consensus 140 ~k~vgvi~~~~~~~s~~~~~~~~~~~~~--------~g~~~v~~~~~~~~~~----~~~~~~l~~~~d~i~~~~d~~~~~ 207 (302)
T 3lkv_A 140 VKSIGVVYNPGEANAVSLMELLKLSAAK--------HGIKLVEATALKSADV----QSATQAIAEKSDVIYALIDNTVAS 207 (302)
T ss_dssp CCEEEEEECTTCHHHHHHHHHHHHHHHH--------TTCEEEEEECSSGGGH----HHHHHHHHTTCSEEEECSCHHHHH
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHH--------cCCEEEEEecCChHHH----HHHHHhccCCeeEEEEeCCcchhh
Confidence 3467888766533222223333333332 2555544333332222 23333445578888888776533
Q ss_pred --HHHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHH
Q 006567 110 --HIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMV 159 (640)
Q Consensus 110 --~~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll 159 (640)
..+...+...++|+++... ..+.. .-+.-...+...+++..+++.
T Consensus 208 ~~~~i~~~~~~~~iPv~~~~~--~~v~~---G~l~~~~~~~~~~G~~aa~~a 254 (302)
T 3lkv_A 208 AIEGMIVAANQAKTPVFGAAT--SYVER---GAIASLGFDYYQIGVQTADYV 254 (302)
T ss_dssp THHHHHHHHHHTTCCEEESSH--HHHHT---TCSEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCceeeccc--ccccC---CceEEEecCHHHHHHHHHHHH
Confidence 4456678889999997422 11111 233455566777776666653
No 321
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=32.02 E-value=3.2e+02 Score=25.57 Aligned_cols=211 Identities=9% Similarity=-0.005 Sum_probs=98.9
Q ss_pred CCCeeEEEEEEeecCCcc--chHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhc----CcEEE
Q 006567 27 ARPAVVNVGALFTLDSTI--GRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMET----DIVAI 100 (640)
Q Consensus 27 ~~~~~i~IG~l~~~~~~~--g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~----~v~ai 100 (640)
...+-++++.++|..... ..+ ...+ -+.+.+.+ +..-..+.+ ..++..++..+.+.+.- .-.++
T Consensus 45 ~~~G~ltv~~i~p~~~~~~l~~q-l~~l---~~~l~~r~-----v~a~~~vi~-a~d~~~G~~~lvq~yglg~l~PNTil 114 (294)
T 3g40_A 45 YPKGSVKLLGLAGNTDKENLLSQ-LPSI---SEGFQEEG-----VFSSWTIID-TAEFEENLVVGMEALTGSFFRPSILF 114 (294)
T ss_dssp TTTCEEEEEECC---CTTCHHHH-HHHH---HHHHHHTT-----CEEEEEEC------CHHHHHHHHHHTTCSSCSCEEE
T ss_pred cCceeEEEEEEccCCCccHHHHH-HHHH---HHHHHhCC-----ceeEEEEEe-cCChhHHHHHHHHHcCCCCCCCCEEE
Confidence 456789999999987433 222 2222 34455433 322233333 23566777776666553 23455
Q ss_pred Ec-CCChHHHHHHH---Hhhc--cCCceEEecccCCCCCCCCCCCcEE----------EecCCchHHHHHHHHHHHhcCC
Q 006567 101 IG-PQCSTVAHIVS---YVSN--ELQVPLLSFGVTDPTLSSLQYPFFV----------RTTQSDSYQMTAVAEMVSYYGW 164 (640)
Q Consensus 101 iG-p~~s~~~~~v~---~~~~--~~~iP~is~~~~~~~l~~~~~~~~~----------r~~p~~~~~~~al~~ll~~~~w 164 (640)
+| |..++.-.... ..+. ..|+.++... ....+....-=.++ ++.-....++-.++.+|+. +|
T Consensus 115 Lg~~~~~e~~~~y~~~i~~~~~~~~nVlil~~~-~~~~fg~~~~IdvW~~~~~~~W~~g~~~~Ng~LmlllAylL~~-nW 192 (294)
T 3g40_A 115 LRLPENRDRDEEIREIIRKASMYRMGVLLFSKH-PQAGLGRQNLINLWIENRGLDWDISMELGNMDLALLIAYKLKS-NW 192 (294)
T ss_dssp EECCSSGGGHHHHHHHHHHHHHTTCEEEEEECC-TTTTTTTSCEEEEECCCC---CCCCSCCCTTHHHHHHHHHHHH-HH
T ss_pred eCCCCChhhhHHHHHHHHHHHHhCceEEEEecC-CccCCCCCceEEEecCCCCCcccccccccchhHHHHHHHHHhh-Cc
Confidence 55 44443322222 2222 3355555421 11222211101123 3334556677777777765 47
Q ss_pred c-EEEEEE-EcCCCCcccHH-HHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecChhhHHHHHH
Q 006567 165 N-AVSVIF-VDNEYGRNGVS-ALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFS 241 (640)
Q Consensus 165 ~-~v~ii~-~~~~~g~~~~~-~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~il~ 241 (640)
+ ++.++. .+++.....++ .+.+.++...+......... .|.+++.+ ..++|.+++......-.++++
T Consensus 193 ~A~I~L~~vV~de~a~~~a~~~l~~Lv~~~Ri~a~~~vv~~--------~F~~il~~--s~~ADL~flGl~~~~df~~~~ 262 (294)
T 3g40_A 193 KASLSFMTFAPTAIQAQAAENFLQSLAELARIPNVKMQVLR--------ENPIKSSK--LPFASLHIFSLDPNPDLDLAR 262 (294)
T ss_dssp TCEEEEEEECSSHHHHHHHHHHHHHHHHHHTCCSCEEEEES--------SCTTTSSS--CCCCSEEEEECCSSCCHHHHH
T ss_pred CCeEEEEEecCCHHHHHHHHHHHHHHHHHhcCCceEEEecC--------chHHHHhh--CcCCCEEEEcCCCCCcHHHHH
Confidence 4 444443 23433333333 33333333323221111011 12234444 267999999988777777887
Q ss_pred HHHHcCCccCCeEEEEeCcc
Q 006567 242 VAKYLGMMGNGYVWIATDWL 261 (640)
Q Consensus 242 ~a~~~gl~~~~~~~i~~~~~ 261 (640)
++-+ +++..+.++..++.
T Consensus 263 ~~~~--~~~ssc~f~~dsg~ 280 (294)
T 3g40_A 263 HLME--KAGSSCIFALDSGE 280 (294)
T ss_dssp HHHH--HHTSEEEEEECCSC
T ss_pred HHHH--hcCCeEEEEecCch
Confidence 7766 45666777765443
No 322
>1vsq_C Mannose-specific phosphotransferase enzyme IIB component; sugar transport, complex (transferase/phosphocarrier, cytoplasm, membrane; HET: NEP; NMR {Escherichia coli} PDB: 2jzn_C 2jzo_D 2jzh_A
Probab=31.41 E-value=87 Score=26.68 Aligned_cols=81 Identities=10% Similarity=0.055 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhcCCcEEEEEEEcCCCCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEe
Q 006567 151 QMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLH 230 (640)
Q Consensus 151 ~~~al~~ll~~~~w~~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~ 230 (640)
+++.+..+.++++.+++.++- |........+.+.+.+.-.|+.+.... .++....+.+-+..+.++++++
T Consensus 17 HGQV~t~W~~~~~~~~IiVvn-D~vA~D~~~k~~lk~a~P~gvk~~i~s---------ve~ai~~~~~~~~~~~~v~ll~ 86 (165)
T 1vsq_C 17 HGQVATRWTKETNVSRIIVVS-DEVAADTVRKTLLTQVAPPGVTAHVVD---------VAKMIRVYNNPKYAGERVMLLF 86 (165)
T ss_dssp CTTHHHHHHHHTTCSEEEEEC-HHHHTCHHHHHHHHHTCCTTCEEEEEC---------HHHHHHHHTCGGGTTCEEEEEE
T ss_pred chheeeeeccccCCCEEEEeC-ccccCCHHHHHHHHhcCCCCCeEEEEE---------HHHHHHHHhccccCCcEEEEEE
Confidence 467888899999999997663 433333455566665555677765331 3444455555445678899999
Q ss_pred cChhhHHHHHH
Q 006567 231 VSPSLGFQVFS 241 (640)
Q Consensus 231 ~~~~~~~~il~ 241 (640)
-++.++..+++
T Consensus 87 k~p~d~~~lve 97 (165)
T 1vsq_C 87 TNPTDVERLVE 97 (165)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99998887753
No 323
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=31.40 E-value=99 Score=26.56 Aligned_cols=62 Identities=16% Similarity=0.081 Sum_probs=36.3
Q ss_pred cEEEEEEEcCC--CC---cccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEec
Q 006567 165 NAVSVIFVDNE--YG---RNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHV 231 (640)
Q Consensus 165 ~~v~ii~~~~~--~g---~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~ 231 (640)
-+++||...|+ .| ......+.+.+++.|+.+.....++.+ ...+...+++..+. +|+||..+
T Consensus 4 ~~v~IistGdEll~G~i~DtN~~~l~~~L~~~G~~v~~~~iv~Dd----~~~I~~~l~~a~~~-~DlVittG 70 (172)
T 3kbq_A 4 KNASVITVGNEILKGRTVNTNAAFIGNFLTYHGYQVRRGFVVMDD----LDEIGWAFRVALEV-SDLVVSSG 70 (172)
T ss_dssp CEEEEEEECHHHHTTSSCCHHHHHHHHHHHHTTCEEEEEEEECSC----HHHHHHHHHHHHHH-CSEEEEES
T ss_pred CEEEEEEEcccccCCcEEeHHHHHHHHHHHHCCCEEEEEEEeCCC----HHHHHHHHHHHHhc-CCEEEEcC
Confidence 35777765443 12 234456677777778777766655533 55666666655433 66666653
No 324
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=31.27 E-value=1.1e+02 Score=28.41 Aligned_cols=85 Identities=12% Similarity=0.115 Sum_probs=56.4
Q ss_pred CeEEEEeecCCCccceEEeecCCcceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHhhHHHHHHcCcccEEEeee
Q 006567 465 KLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDI 544 (640)
Q Consensus 465 ~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~~~~~~ 544 (640)
++|+|++... -...+...++..+.++.. ++++++.. +....++..|.+|++|+++...
T Consensus 92 g~l~I~~~~~--------------~~~~~l~~~l~~f~~~~P-~i~i~l~~-------~~~~~~~~~l~~g~~Dlai~~~ 149 (305)
T 3fxq_A 92 GHITFAASPA--------------IALAALPLALASFAREFP-DVTVNVRD-------GMYPAVSPQLRDGTLDFALTAA 149 (305)
T ss_dssp TEEEEEECHH--------------HHHTHHHHHHHHHHHHCT-TCEEEEEE-------CCTTTTHHHHHHTSSSEEEEEC
T ss_pred ceEEEEechH--------------HHHHHHHHHHHHHHHHCC-CCEEEEEE-------CCHHHHHHHHHcCCCCEEEecC
Confidence 5788888521 122456678888888775 34466665 5578899999999999998643
Q ss_pred eeeccccceEEeCccccccceEEEEecCC
Q 006567 545 TIVTNRTKIVDFSQPYAASGLVVVVPFRK 573 (640)
Q Consensus 545 ~~t~~R~~~vdfs~p~~~~~~~il~~~~~ 573 (640)
...... ..+. +.+++...+.+++++..
T Consensus 150 ~~~~~~-~~l~-~~~L~~~~~~~v~~~~h 176 (305)
T 3fxq_A 150 HKHDID-TDLE-AQPLYVSDVVIVGQRQH 176 (305)
T ss_dssp CGGGSC-TTEE-EEEEEECCEEEEEETTC
T ss_pred CCCCCc-cCee-EEEeecCcEEEEEcCCC
Confidence 322111 1221 46788888888887665
No 325
>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis}
Probab=31.16 E-value=2.2e+02 Score=27.34 Aligned_cols=133 Identities=13% Similarity=0.124 Sum_probs=71.4
Q ss_pred EEEEEEeecCCccchHHHHHHHHHHHHHhccCCCCCCcEEE--EEEccCCCChHHHHHHHHHhHhcCcEEEEcCCChHHH
Q 006567 32 VNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLN--ITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTVA 109 (640)
Q Consensus 32 i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~--~~~~D~~~~~~~a~~~a~~l~~~~v~aiiGp~~s~~~ 109 (640)
-.|+.+|...+ ...+..|+.|+.++ +|..+. +.. +++-.-.+.+.-..+.++.-+++|+-=... .
T Consensus 45 k~la~lF~e~S---TRTR~SFE~A~~~L-------Gg~~i~~~l~~-~ss~~kgEsl~DTarvls~~~D~iviR~~~--~ 111 (328)
T 3grf_A 45 KTLLAFFAKPS---LRTRVSLETAMTRL-------GGHAIYYELGA-NSNVGGKETVQDTAEVFSRMVDICTARLAT--K 111 (328)
T ss_dssp CEEEEEESSCC---HHHHHHHHHHHHHH-------TCEEEEEEC-----------CHHHHHHHHTTTCSEEEEECSS--H
T ss_pred CEEEEEecCCC---chHHHHHHHHHHHC-------CCeEEccccCc-cccCCCCCCHHHHHHHHHhhCCEEEEecCC--h
Confidence 46788887764 35688999999997 344444 433 333222223333334445545555532221 2
Q ss_pred HHHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHH---HhcC----------CcEEEEEEEcCCC
Q 006567 110 HIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMV---SYYG----------WNAVSVIFVDNEY 176 (640)
Q Consensus 110 ~~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll---~~~~----------w~~v~ii~~~~~~ 176 (640)
..+..++...++|+|.-+ + +..+| .++++|++ +++| ..+|+++. |..
T Consensus 112 ~~~~~lA~~~~vPVINag--~----~~~HP------------tQaLaDl~Ti~e~~g~~~~~~~~l~gl~va~vG--D~~ 171 (328)
T 3grf_A 112 EMMREMAQHASVPCINAL--D----DFGHP------------LQMVCDFMTIKEKFTAAGEFSNGFKGIKFAYCG--DSM 171 (328)
T ss_dssp HHHHHHHHHCSSCEEESS--C----SSCCH------------HHHHHHHHHHHHHHHHTTCCTTTGGGCCEEEES--CCS
T ss_pred hHHHHHHHhCCCCEEeCC--C----CCCCc------------HHHHHHHHHHHHHhCCccccccccCCcEEEEeC--CCC
Confidence 334555666789999732 2 11233 37888863 3444 34666664 322
Q ss_pred CcccHHHHHHHHhhcCeEEEEe
Q 006567 177 GRNGVSALNDKLAERRCRISYK 198 (640)
Q Consensus 177 g~~~~~~~~~~~~~~g~~v~~~ 198 (640)
. ..+..+-..+...|.++...
T Consensus 172 ~-~va~Sl~~~~~~~G~~v~~~ 192 (328)
T 3grf_A 172 N-NVTYDLMRGCALLGMECHVC 192 (328)
T ss_dssp S-HHHHHHHHHHHHHTCEEEEE
T ss_pred c-chHHHHHHHHHHcCCEEEEE
Confidence 2 46777777777788876654
No 326
>3r26_A Molybdate-binding periplasmic protein; protein binding; 1.70A {Escherichia coli} SCOP: c.94.1.1 PDB: 3axf_A 1amf_A 1wod_A
Probab=31.15 E-value=21 Score=32.65 Aligned_cols=70 Identities=24% Similarity=0.212 Sum_probs=46.4
Q ss_pred HHHHHHHHHhCCCCccEEEEEcCCCCCCCCHhhHHHHHHcCc-ccEEEeeeeeeccc---cceEE--eCccccccceEEE
Q 006567 495 IDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGV-FDAVVGDITIVTNR---TKIVD--FSQPYAASGLVVV 568 (640)
Q Consensus 495 ~dl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~D~~~~~~~~t~~R---~~~vd--fs~p~~~~~~~il 568 (640)
-++++.+.++.|.++++.+ +....++..+.+|. +|+.++.-....++ ...+. -..+|....++++
T Consensus 22 ~~l~~~Fe~~~gi~V~~~~---------~~s~~l~~~i~~g~~~Dv~~~a~~~~~~~l~~~g~~~~~~~~~~~~~~lvl~ 92 (237)
T 3r26_A 22 QDIATQFKKEKGVDVVSSF---------ASSSTLARQIEAGAPADLFISADQKWMDYAVDKKAIDTATRQTLLGNSLVVV 92 (237)
T ss_dssp HHHHHHHHHHHCCEEEEEE---------ECHHHHHHHHHHTCCCSEEECSSHHHHHHHHHTTCBCGGGCEEEEEECEEEE
T ss_pred HHHHHHHHhccCCeEEEEE---------CCHHHHHHHHHcCCCceEEEECCHHHHHHHHHCCCCCCCceeeeEcceEEEE
Confidence 4677788888888865544 45778889998887 99998743211111 12222 1257888899999
Q ss_pred EecCC
Q 006567 569 VPFRK 573 (640)
Q Consensus 569 ~~~~~ 573 (640)
+++..
T Consensus 93 ~~~~~ 97 (237)
T 3r26_A 93 APKAS 97 (237)
T ss_dssp EESSC
T ss_pred EeCCC
Confidence 98764
No 327
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=31.08 E-value=84 Score=30.01 Aligned_cols=80 Identities=14% Similarity=0.067 Sum_probs=50.6
Q ss_pred CCcEEEEEEE--cCCCCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecChhhHHHHH
Q 006567 163 GWNAVSVIFV--DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVF 240 (640)
Q Consensus 163 ~w~~v~ii~~--~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~il 240 (640)
.-.+|+++.. .+.|.....+.+++.+++.|..+..... . .+.......++.+...+.|.||+....... ..+
T Consensus 59 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-~~~ 132 (332)
T 2hsg_A 59 KTTTVGVIIPDISNIFYAELARGIEDIATMYKYNIILSNS---D--QNQDKELHLLNNMLGKQVDGIIFMSGNVTE-EHV 132 (332)
T ss_dssp -CCEEEEEEC--CCSHHHHHHHHHHHHHHHHTCEEEEEEC---C--SHHHHHHHHHHHTSCCSSCCEEECCSSCCH-HHH
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEeC---C--CChHHHHHHHHHHHhCCCcEEEEecCCCCH-HHH
Confidence 3457888875 3566677788888999999988765321 1 123334556777777889988887533222 455
Q ss_pred HHHHHcCC
Q 006567 241 SVAKYLGM 248 (640)
Q Consensus 241 ~~a~~~gl 248 (640)
+.+.+.|.
T Consensus 133 ~~l~~~~i 140 (332)
T 2hsg_A 133 EELKKSPV 140 (332)
T ss_dssp HHHTTSSS
T ss_pred HHHHhCCC
Confidence 55555443
No 328
>1ixh_A Phosphate-binding protein; phosphate transport, ultra high resolution, phosphate bindin protein; 0.98A {Escherichia coli} SCOP: c.94.1.1 PDB: 2abh_A 1a54_A* 1a55_A 1ixi_A 1quk_A 1ixg_A 1oib_A 1pbp_A 1qul_A 1qui_A 1quj_A 1a40_A 2z22_X
Probab=31.04 E-value=30 Score=33.37 Aligned_cols=71 Identities=13% Similarity=0.066 Sum_probs=47.9
Q ss_pred eHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHhhHHHHHHcCcccEEEeeeeeeccccceE-EeCccccccceEEEEecC
Q 006567 494 CIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDITIVTNRTKIV-DFSQPYAASGLVVVVPFR 572 (640)
Q Consensus 494 ~~dl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~~~~~~~~t~~R~~~v-dfs~p~~~~~~~il~~~~ 572 (640)
.-.+++.+.+.-+.+ +.+.. +.....+.++.+|++|+++..-.++.+..+.- --..|+...++++++..+
T Consensus 16 l~~~~~~f~~~p~v~--i~v~~-------~gS~~~~~~l~~g~~Di~~~~~~~~~~e~~~~~l~~~~~~~d~lvvvv~~~ 86 (321)
T 1ixh_A 16 YAKWADTYQKETGNK--VNYQG-------IGSSGGVKQIIANTVDFGASDAPLSDEKLAQEGLFQFPTVIGGVVLAVNIP 86 (321)
T ss_dssp HHHHHHHHHHHHCCE--EEEEE-------CCHHHHHHHHHTTCSSEEEESSCCCHHHHHHHTEEEEEEEEEEEEEEECCT
T ss_pred HHHHHHHHHhcCCce--EEEec-------CCCHHHHHHHHcCCCcEEecccCCChhhHhhCCCEEeeeeeeeEEEEEeCC
Confidence 334555555533455 55444 56888999999999999988777665542100 124789999999999876
Q ss_pred C
Q 006567 573 K 573 (640)
Q Consensus 573 ~ 573 (640)
.
T Consensus 87 ~ 87 (321)
T 1ixh_A 87 G 87 (321)
T ss_dssp T
T ss_pred C
Confidence 4
No 329
>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}
Probab=30.99 E-value=3.5e+02 Score=25.63 Aligned_cols=133 Identities=14% Similarity=0.133 Sum_probs=72.3
Q ss_pred EEEEEEeecCCccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcCcEEEEcCCChHHHHH
Q 006567 32 VNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTVAHI 111 (640)
Q Consensus 32 i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aiiGp~~s~~~~~ 111 (640)
-.|+.+|...+ ...+..|+.|+.++ +|..+.+...+++-.-.+.+.-..+.++.-+++|+-=... ...
T Consensus 37 k~la~lF~e~S---TRTR~SFe~A~~~L-------Gg~~i~l~~~~ss~~kgEsl~DTarvls~~~D~iviR~~~--~~~ 104 (307)
T 3tpf_A 37 KTLAMIFEKNS---TRTRMAFELAITEL-------GGKALFLSSNDLQLSRGEPVKDTARVIGAMVDFVMMRVNK--HET 104 (307)
T ss_dssp CEEEEEESSCC---HHHHHHHHHHHHHT-------TCEEEEECTTTCCTTTSSCHHHHHHHHHHHSSEEEEECSC--HHH
T ss_pred CEEEEEecCCC---cchHHhHHHHHHHc-------CCeEEEcCcccccCCCCCCHHHHHHHHHHhCCEEEEecCC--hHH
Confidence 35788887764 34688999999885 4555554433332111111222222223223443321111 233
Q ss_pred HHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHH---HhcC-Cc---EEEEEEEcCCCCcccHHHH
Q 006567 112 VSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMV---SYYG-WN---AVSVIFVDNEYGRNGVSAL 184 (640)
Q Consensus 112 v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll---~~~~-w~---~v~ii~~~~~~g~~~~~~~ 184 (640)
+..++...++|+|.-+. + ..+| .++++|++ +++| ++ +|+++. | +...+..+
T Consensus 105 ~~~lA~~~~vPVINag~-~-----~~HP------------tQaLaDl~Ti~e~~g~l~~gl~va~vG--D--~~~va~Sl 162 (307)
T 3tpf_A 105 LLEFARYSKAPVINALS-E-----LYHP------------TQVLGDLFTIKEWNKMQNGIAKVAFIG--D--SNNMCNSW 162 (307)
T ss_dssp HHHHHHHCSSCEEEEEC-S-----SCCH------------HHHHHHHHHHHHTTCCGGGCCEEEEES--C--SSHHHHHH
T ss_pred HHHHHHhCCCCEEeCCC-C-----CcCc------------HHHHHHHHHHHHHhCCCCCCCEEEEEc--C--CCccHHHH
Confidence 45566677899997321 1 1233 38888864 2443 34 666664 3 34567777
Q ss_pred HHHHhhcCeEEEEe
Q 006567 185 NDKLAERRCRISYK 198 (640)
Q Consensus 185 ~~~~~~~g~~v~~~ 198 (640)
...+...|.++...
T Consensus 163 ~~~~~~~G~~v~~~ 176 (307)
T 3tpf_A 163 LITAAILGFEISIA 176 (307)
T ss_dssp HHHHHHHTCEEEEE
T ss_pred HHHHHHcCCEEEEE
Confidence 77888888877654
No 330
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=30.96 E-value=62 Score=29.80 Aligned_cols=78 Identities=9% Similarity=0.041 Sum_probs=49.4
Q ss_pred cEEEEEEEc--CCCCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecChhhHHHHHHH
Q 006567 165 NAVSVIFVD--NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFSV 242 (640)
Q Consensus 165 ~~v~ii~~~--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~il~~ 242 (640)
++|+++..+ +.|.......+++.+++.|..+..... . .+.......++.+...+.|.||+...... ...++.
T Consensus 4 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~--~~~~~~~~~~~~l~~~~vdgii~~~~~~~-~~~~~~ 77 (275)
T 3d8u_A 4 YSIALIIPSLFEKACAHFLPSFQQALNKAGYQLLLGYS---D--YSIEQEEKLLSTFLESRPAGVVLFGSEHS-QRTHQL 77 (275)
T ss_dssp CEEEEEESCSSCHHHHHHHHHHHHHHHHTSCEECCEEC---T--TCHHHHHHHHHHHHTSCCCCEEEESSCCC-HHHHHH
T ss_pred eEEEEEeCCCccccHHHHHHHHHHHHHHCCCEEEEEcC---C--CCHHHHHHHHHHHHhcCCCEEEEeCCCCC-HHHHHH
Confidence 467887753 446566778888899999987653321 1 22444556778888888998887743222 245566
Q ss_pred HHHcCC
Q 006567 243 AKYLGM 248 (640)
Q Consensus 243 a~~~gl 248 (640)
+.+.|.
T Consensus 78 l~~~~i 83 (275)
T 3d8u_A 78 LEASNT 83 (275)
T ss_dssp HHHHTC
T ss_pred HHhCCC
Confidence 666554
No 331
>4esw_A Pyrimidine biosynthesis enzyme THI13; thiamin pyrimidine biosynthesis, transferase; HET: CIT; 1.60A {Candida albicans} PDB: 4esx_A*
Probab=30.71 E-value=1.1e+02 Score=29.44 Aligned_cols=89 Identities=4% Similarity=-0.006 Sum_probs=48.4
Q ss_pred cceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHhhHHHHHHcCcccEEEeeee-eeccccc---eEEeCcccccc
Q 006567 488 DMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDIT-IVTNRTK---IVDFSQPYAAS 563 (640)
Q Consensus 488 ~~~~G~~~dl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~~~~~~~-~t~~R~~---~vdfs~p~~~~ 563 (640)
..+.|+-+-.=+=.-++-|++ +++... .++..++..|..|++|+++++.. ....|.+ ..-+..-+...
T Consensus 19 ~~~ap~~vA~~kG~f~e~GLd--Vei~~~------~~~~~~~~al~sG~~D~g~~~~~~~~~a~~~G~~v~~v~~~~~~~ 90 (342)
T 4esw_A 19 PYHIPVYLANIKGYFKDENLD--IAILEP------SNPSDVTELVGSGKVDMGLKAMVGTLAAKARGFPVTSIGSLLDEP 90 (342)
T ss_dssp GGGHHHHHHHHTTHHHHTTCE--EEEEEE------SSGGGHHHHHHHTSSSEEEEEHHHHHHHHHTTCCEEEEEEEECSC
T ss_pred cChHHHHHHHHCCchHHcCCe--EEEEeC------CChHHHHHHHHcCCcCEEEecHHHHHHHHHCCCCeEEEEEeccCC
Confidence 334444332223344566887 444443 56888999999999999987643 2223332 22222223334
Q ss_pred ceEEEEecCCCCcCcceeccc
Q 006567 564 GLVVVVPFRKLNTGAWAFLRP 584 (640)
Q Consensus 564 ~~~il~~~~~~~~~~~~~l~p 584 (640)
...+++++..........|+-
T Consensus 91 ~~~~~~~~~~~~~~~~~dLkG 111 (342)
T 4esw_A 91 FTGICYLEGSGITSDFQSLKG 111 (342)
T ss_dssp CEEEEEETTSSCCSSGGGGTT
T ss_pred cccccccccccccCCHHHhCC
Confidence 556666655533344455543
No 332
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=30.70 E-value=2.7e+02 Score=25.35 Aligned_cols=115 Identities=13% Similarity=0.091 Sum_probs=62.1
Q ss_pred EEEEEeecC-CccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhc---CcEEEEcCCChHH
Q 006567 33 NVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMET---DIVAIIGPQCSTV 108 (640)
Q Consensus 33 ~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~---~v~aiiGp~~s~~ 108 (640)
+|+++.... .........|++.|+++. |.++. +.....+...+.+.+.++++. ++.||+...+ ..
T Consensus 120 ~i~~i~~~~~~~~~~~R~~gf~~~l~~~--------g~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~ai~~~~d-~~ 188 (277)
T 3cs3_A 120 KVLLLSGPEKGYDSQERLAVSTRELTRF--------GIPYE--IIQGDFTEPSGYAAAKKILSQPQTEPVDVFAFND-EM 188 (277)
T ss_dssp CEEEEECCTTSHHHHHHHHHHHHHHHHT--------TCCEE--EEECCSSHHHHHHHHHHHTTSCCCSSEEEEESSH-HH
T ss_pred eEEEEeCCccCccHHHHHHHHHHHHHHc--------CCCee--EEeCCCChhHHHHHHHHHHhcCCCCCcEEEEcCh-HH
Confidence 577776543 222345577888887763 22233 223344666677777788765 6899997443 33
Q ss_pred HHHHHHhhccCC--ce----EEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHH
Q 006567 109 AHIVSYVSNELQ--VP----LLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVS 160 (640)
Q Consensus 109 ~~~v~~~~~~~~--iP----~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~ 160 (640)
+..+...+...+ +| ++++.... ......|.+..+..+...++...+++|.
T Consensus 189 a~g~~~al~~~g~~vP~di~vvg~d~~~--~~~~~~p~lttv~~~~~~~g~~a~~~l~ 244 (277)
T 3cs3_A 189 AIGVYKYVAETNYQMGKDIRIIGFDNSE--LGAFVQPRLATIAYSKHRWGMVAAEKII 244 (277)
T ss_dssp HHHHHHHHTTSSCCBTTTEEEECSSCCH--HHHHSSSCCBEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCcEEEEEeCCcH--HHhccCCceeEEecCHHHHHHHHHHHHH
Confidence 444555555544 34 55442211 1111113344445566677777777543
No 333
>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}
Probab=30.02 E-value=3.7e+02 Score=25.65 Aligned_cols=134 Identities=10% Similarity=0.117 Sum_probs=71.0
Q ss_pred EEEEEEeecCCccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcCcEEEEcCCChHHHHH
Q 006567 32 VNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTVAHI 111 (640)
Q Consensus 32 i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aiiGp~~s~~~~~ 111 (640)
-.|+.+|...+ ...+..|+.|+.++ +|..+.+...+++-.-.+.+.-..+.++.-+++|+-=... ...
T Consensus 49 k~la~lF~e~S---TRTR~SFE~A~~~L-------Gg~~i~l~~~~ss~~kgEsl~DTarvLs~~~D~iviR~~~--~~~ 116 (323)
T 3gd5_A 49 KVLGLVFLKAS---TRTRVSFTVAMYQL-------GGQVIDLSPSNTQVGRGEPVRDTARVLGRYVDGLAIRTFA--QTE 116 (323)
T ss_dssp CEEEEEESSCC---HHHHHHHHHHHHHT-------TCEEEEC----------CCHHHHHHHHTTTCSEEEEECSS--HHH
T ss_pred CEEEEEecCCC---cchHhhHHHHHHHc-------CCeEEEeCcccccCCCCCCHHHHHHHHHHhCCEEEEecCC--hhH
Confidence 36788887764 34688999999886 3444444333332111122233333444445555531111 223
Q ss_pred HHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHH---hc---CCcEEEEEEEcCCCCcccHHHHH
Q 006567 112 VSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVS---YY---GWNAVSVIFVDNEYGRNGVSALN 185 (640)
Q Consensus 112 v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~---~~---~w~~v~ii~~~~~~g~~~~~~~~ 185 (640)
+..++...++|+|.-+ + +...| .++++|++. ++ ...+|+++. |. ...+..+-
T Consensus 117 ~~~lA~~~~vPVINag--~----~~~HP------------tQaLaDl~Ti~e~~g~l~glkva~vG--D~--~rva~Sl~ 174 (323)
T 3gd5_A 117 LEEYAHYAGIPVINAL--T----DHEHP------------CQVVADLLTIRENFGRLAGLKLAYVG--DG--NNVAHSLL 174 (323)
T ss_dssp HHHHHHHHCSCEEEEE--C----SSCCH------------HHHHHHHHHHHHHHSCCTTCEEEEES--CC--CHHHHHHH
T ss_pred HHHHHHhCCCCEEeCC--C----CCCCc------------HHHHHHHHHHHHHhCCCCCCEEEEEC--CC--CcHHHHHH
Confidence 3455566689999732 2 11233 378888642 33 456777664 32 34666777
Q ss_pred HHHhhcCeEEEEee
Q 006567 186 DKLAERRCRISYKS 199 (640)
Q Consensus 186 ~~~~~~g~~v~~~~ 199 (640)
..+...|.++....
T Consensus 175 ~~~~~~G~~v~~~~ 188 (323)
T 3gd5_A 175 LGCAKVGMSIAVAT 188 (323)
T ss_dssp HHHHHHTCEEEEEC
T ss_pred HHHHHcCCEEEEEC
Confidence 77777888776543
No 334
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=29.99 E-value=1.4e+02 Score=27.81 Aligned_cols=72 Identities=8% Similarity=-0.051 Sum_probs=47.4
Q ss_pred HHHHHhcCCcEEEEEEEc--CCCCc-ccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecC
Q 006567 156 AEMVSYYGWNAVSVIFVD--NEYGR-NGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVS 232 (640)
Q Consensus 156 ~~ll~~~~w~~v~ii~~~--~~~g~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~ 232 (640)
+.-|+..+-+.|+++..+ +.+.. ...+.+++.+++.|..+..... . .+.......++.+...+.|.||+...
T Consensus 5 Ar~L~~~~s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~----~~~~~~~~~~~~l~~~~vdGiIi~~~ 79 (301)
T 3miz_A 5 ARLIRSSRSNTFGIITDYVSTTPYSVDIVRGIQDWANANGKTILIANT-G----GSSEREVEIWKMFQSHRIDGVLYVTM 79 (301)
T ss_dssp -------CCCEEEEEESSTTTCCSCHHHHHHHHHHHHHTTCEEEEEEC-T----TCHHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred HHHHhhCCCCEEEEEeCCCcCcccHHHHHHHHHHHHHHCCCEEEEEeC-C----CChHHHHHHHHHHHhCCCCEEEEecC
Confidence 334445556789988864 35666 7889999999999988875432 1 22445567788888889998888753
No 335
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=29.84 E-value=3.2e+02 Score=24.87 Aligned_cols=119 Identities=11% Similarity=0.071 Sum_probs=63.6
Q ss_pred EEEEEEeecC-CccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhc--CcEEEEcCCChHH
Q 006567 32 VNVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMET--DIVAIIGPQCSTV 108 (640)
Q Consensus 32 i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~--~v~aiiGp~~s~~ 108 (640)
=+|+++.... .........|++.++++.+. . +... .....+...+.+.+.+++.. .+.||+...+. .
T Consensus 132 ~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~-------~-~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~-~ 201 (289)
T 3brs_A 132 GKIGVISFVKNSKTAMDREEGLKIGLSDDSN-------K-IEAI-YYCDSNYDKAYDGTVELLTKYPDISVMVGLNQY-S 201 (289)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHGGGGG-------G-EEEE-EECTTCHHHHHHHHHHHHHHCTTEEEEEESSHH-H
T ss_pred ceEEEEECCCCCccHHHHHHHHHHHHHhCCC-------c-EEee-ecCCCCHHHHHHHHHHHHHhCCCceEEEECCCc-c
Confidence 4677776543 33334556788878776321 1 2111 22334666677777777765 58999985443 3
Q ss_pred HHHHHHhhccC----CceEEecccCCCCCCCCCCCcE-EEecCCchHHHHHHHHHHH
Q 006567 109 AHIVSYVSNEL----QVPLLSFGVTDPTLSSLQYPFF-VRTTQSDSYQMTAVAEMVS 160 (640)
Q Consensus 109 ~~~v~~~~~~~----~iP~is~~~~~~~l~~~~~~~~-~r~~p~~~~~~~al~~ll~ 160 (640)
+..+...+... ++.++++........-...+.+ ..+..+...+++..++++.
T Consensus 202 a~g~~~al~~~G~~~di~vvg~d~~~~~~~~~~~~~l~ttv~~~~~~~g~~a~~~l~ 258 (289)
T 3brs_A 202 ATGAARAIKDMSLEAKVKLVCIDSSMEQIQYLEEGIFEAMVVQKPFNIGYLGVEKAL 258 (289)
T ss_dssp HHHHHHHHHHTTCTTTSEEEEEESCSCC-----CCSCCEEEECCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhcCCCCCEEEEEECCCHHHHHHHHCCceEEEEecChHHHHHHHHHHHH
Confidence 33344444333 4778876543321111111234 5555666777777777543
No 336
>3uor_A ABC transporter sugar binding protein; ALFA/beta protein, periplasmic-binding protein, maltose, SUG binding protein; 2.20A {Xanthomonas axonopodis PV}
Probab=29.53 E-value=56 Score=33.16 Aligned_cols=27 Identities=11% Similarity=0.176 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhccCCCCCCcEEEEEEcc
Q 006567 48 AKIAIEEAVKDVNSNSSILHGTKLNITMQS 77 (640)
Q Consensus 48 ~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D 77 (640)
....++-.++++++.. ||++|+++...
T Consensus 40 ~~~~~~~~~~~F~~~~---pgi~V~~~~~~ 66 (458)
T 3uor_A 40 EAEVVAELVADFEKQN---PTIHVDVQNIP 66 (458)
T ss_dssp HHHHHHHHHHHHHTTC---TTEEEEEEECC
T ss_pred cHHHHHHHHHHHHHHC---CCcEEEEEEcC
Confidence 4567888899999876 78899888753
No 337
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=29.48 E-value=1e+02 Score=28.66 Aligned_cols=81 Identities=10% Similarity=0.024 Sum_probs=49.2
Q ss_pred cEEEEEEE--cCCCCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecCh-hhHHHHHH
Q 006567 165 NAVSVIFV--DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP-SLGFQVFS 241 (640)
Q Consensus 165 ~~v~ii~~--~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~-~~~~~il~ 241 (640)
+.|+++.. ++.|.....+.+++.+++.|..+....... . .+...-...++.+...+.|.||+.... ......++
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~~~~~~ 78 (288)
T 1gud_A 2 AEYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIFASPS-E--GDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVA 78 (288)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCCEEEEECSS-T--TCHHHHHHHHHHHHTSSEEEEEECCSSSSTTHHHHH
T ss_pred cEEEEEeCCCCchHHHHHHHHHHHHHHHcCCEEEEeCCCC-C--CCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHH
Confidence 35777764 345666677788888888888766532101 1 123344556777777889988886432 22334566
Q ss_pred HHHHcCC
Q 006567 242 VAKYLGM 248 (640)
Q Consensus 242 ~a~~~gl 248 (640)
++.+.|+
T Consensus 79 ~~~~~~i 85 (288)
T 1gud_A 79 RAWKKGI 85 (288)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 6766664
No 338
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=28.78 E-value=2.4e+02 Score=23.68 Aligned_cols=95 Identities=7% Similarity=-0.134 Sum_probs=54.9
Q ss_pred HHHHHHHHhcCCcEEEEEEEcCCCCcccHHHHHHHHhhcCeEEEEeecc--CCCCCCChhHHHHHHHHHh-cCCceEEEE
Q 006567 153 TAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGI--PPESGVNTGYVMDLLVKVA-LMESRVIVL 229 (640)
Q Consensus 153 ~al~~ll~~~~w~~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~--~~~~~~~~~~~~~~l~~l~-~~~~~vivl 229 (640)
..+.+.+...+--..+..|.+ ..+......+.+.+.+.|+++...... ..+...+..|..-.+.-+. ....+.++|
T Consensus 36 ~~l~~~~~~~g~l~~~~~Y~~-~~~~~~~~~~~~~L~~~g~~v~~~p~~~~~~~~~k~~~Dv~laiD~~~~a~~~d~~vL 114 (165)
T 2qip_A 36 NQFWYVATQEKEVVSAKAYAI-ASNDPKQRQFHHILRGVGFEVMLKPYIQRRDGSAKGDWDVGITLDAIEIAPDVDRVIL 114 (165)
T ss_dssp HHHHHHHTTTEEEEEEEEEEC-CCCCHHHHHHHHHHHHHTCEEEECCCCCCSSCCCSCCCHHHHHHHHHHHGGGCSEEEE
T ss_pred HHHHHHHhcCCEEEEEEEEEc-cCCchhHHHHHHHHHHCCcEEEEEeeeeccCCccCCCccHHHHHHHHHhhccCCEEEE
Confidence 455555555543334445532 222245677888899999987643221 1111123444333333222 245788999
Q ss_pred ecChhhHHHHHHHHHHc-CC
Q 006567 230 HVSPSLGFQVFSVAKYL-GM 248 (640)
Q Consensus 230 ~~~~~~~~~il~~a~~~-gl 248 (640)
.+...+...+++.+++. |.
T Consensus 115 vSgD~DF~plv~~lr~~~G~ 134 (165)
T 2qip_A 115 VSGDGDFSLLVERIQQRYNK 134 (165)
T ss_dssp ECCCGGGHHHHHHHHHHHCC
T ss_pred EECChhHHHHHHHHHHHcCc
Confidence 88888899999999984 73
No 339
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=28.76 E-value=2.2e+02 Score=27.51 Aligned_cols=89 Identities=15% Similarity=0.119 Sum_probs=64.3
Q ss_pred ecCCchHHHHHHHHHHHhcCCcEEEEEEEcCCCCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCC
Q 006567 144 TTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALME 223 (640)
Q Consensus 144 ~~p~~~~~~~al~~ll~~~~w~~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 223 (640)
-.|+....++.+.++++..+-++|.|.. |... ..+.+++.++..++.++ .+.+. ..++....-..
T Consensus 260 ClPSle~I~rqIk~~vk~~~lksVFIAT-Da~~---~~~ELk~~L~~~~v~vv---~~~pe--------~a~ID~~I~~~ 324 (362)
T 3zy2_A 260 CSPSKQQILEQIVEKVGSIGAKSVFVAS-DKDH---MIDEINEALKPYEIEAH---RQEPD--------DMYTSLAIMGR 324 (362)
T ss_dssp HSCCHHHHHHHHHHHHHHHTCSEEEEEE-SSCC---CHHHHHHHHGGGTCCEE---CCSSC--------CHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHhcCCcEEEEec-CCHH---HHHHHHHHhhccCceEE---EeCCc--------hhHHHHHHHHh
Confidence 3589999999999999999999998766 4332 57889998887676654 22222 34555555567
Q ss_pred ceEEEEecChhhHHHHHHHHHHcC
Q 006567 224 SRVIVLHVSPSLGFQVFSVAKYLG 247 (640)
Q Consensus 224 ~~vivl~~~~~~~~~il~~a~~~g 247 (640)
++.+|--|...-...|.++=...|
T Consensus 325 A~~FIGN~~SSFSa~I~rERdi~G 348 (362)
T 3zy2_A 325 ADLFVGNCVSTFSHIVKRERDHAG 348 (362)
T ss_dssp SSEEEECTTCHHHHHHHHHHHHSS
T ss_pred CCEeecCccccccHHHHHHHHhcC
Confidence 888888887777777777766666
No 340
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=28.75 E-value=3.3e+02 Score=25.09 Aligned_cols=86 Identities=10% Similarity=0.032 Sum_probs=53.8
Q ss_pred EEEEEEEcCCCCcccHHHHHHH--------Hhhc-CeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecCh---
Q 006567 166 AVSVIFVDNEYGRNGVSALNDK--------LAER-RCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP--- 233 (640)
Q Consensus 166 ~v~ii~~~~~~g~~~~~~~~~~--------~~~~-g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~--- 233 (640)
+|.+-....+...-+...+... ++.. |++|.+--. ......++...++.++++|.+.+..
T Consensus 122 ~Vvlatv~gD~HdiG~~iv~~~k~~~~~~~L~~~~G~eVi~LG~--------~vp~e~iv~aa~e~~~d~VglS~l~t~~ 193 (262)
T 1xrs_B 122 VVVGASTGTDAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGS--------QVANEDFIKKAVELEADVLLVSQTVTQK 193 (262)
T ss_dssp EEEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCS--------SBCHHHHHHHHHHTTCSEEEEECCCCTT
T ss_pred EEEEEeCCCCCchHHHHHHhhhhcccchHHHHhcCCcEEEECCC--------CCCHHHHHHHHHHcCCCEEEEEeecCCc
Confidence 4433333555555566666666 8888 999875332 1123456677777899999997533
Q ss_pred ----hhHHHHHHHHHHcCCccCCeEEEEeC
Q 006567 234 ----SLGFQVFSVAKYLGMMGNGYVWIATD 259 (640)
Q Consensus 234 ----~~~~~il~~a~~~gl~~~~~~~i~~~ 259 (640)
.....+++++++.|+...-.++++..
T Consensus 194 ~~~~~~~~~~i~~L~~~g~~~~i~vivGG~ 223 (262)
T 1xrs_B 194 NVHIQNMTHLIELLEAEGLRDRFVLLCGGP 223 (262)
T ss_dssp SHHHHHHHHHHHHHHHTTCGGGSEEEEECT
T ss_pred cchHHHHHHHHHHHHhcCCCCCCEEEEECC
Confidence 33556788888888754445666543
No 341
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=28.35 E-value=3.9e+02 Score=26.21 Aligned_cols=87 Identities=10% Similarity=0.063 Sum_probs=47.4
Q ss_pred CCcEEEEEEEcC-CCCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecCh------hh
Q 006567 163 GWNAVSVIFVDN-EYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP------SL 235 (640)
Q Consensus 163 ~w~~v~ii~~~~-~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~------~~ 235 (640)
..+++.++|... ......++.+.+.+.+.|.++..... . ..+......++. .+|.||+.++. ..
T Consensus 255 ~~~kv~iiy~S~~GnT~~la~~i~~~l~~~g~~v~~~~l-~------~~~~~~~~~~l~--~~D~iiigsP~y~~~~~~~ 325 (414)
T 2q9u_A 255 CQKKVTVVLDSMYGTTHRMALALLDGARSTGCETVLLEM-T------SSDITKVALHTY--DSGAVAFASPTLNNTMMPS 325 (414)
T ss_dssp CCSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEEG-G------GCCHHHHHHHHH--TCSEEEEECCCBTTBCCHH
T ss_pred cCCeEEEEEECCCchHHHHHHHHHHHHHhCCCeEEEEEc-C------cCCHHHHHHHHH--hCCEEEEEcCccCcCchHH
Confidence 367888888442 22234456677777767766543321 1 122334444444 46777776443 45
Q ss_pred HHHHHHHHHHcCC-ccCCeEEEEe
Q 006567 236 GFQVFSVAKYLGM-MGNGYVWIAT 258 (640)
Q Consensus 236 ~~~il~~a~~~gl-~~~~~~~i~~ 258 (640)
+..+++......+ .+.....+.+
T Consensus 326 ~k~fld~l~~~~~~~~K~~~~~~t 349 (414)
T 2q9u_A 326 VAAALNYVRGLTLIKGKPAFAFGA 349 (414)
T ss_dssp HHHHHHHHHHHTTTTTSBEEEEEE
T ss_pred HHHHHHHHHhhcccCCCEEEEEEe
Confidence 6777777765444 4444444444
No 342
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=28.28 E-value=2.7e+02 Score=23.46 Aligned_cols=75 Identities=13% Similarity=0.126 Sum_probs=46.1
Q ss_pred cEEEEEEEcCCC--Cc---ccHHHHHHHHhhc-----CeEEEEeeccCCCCCCChhHHHHHHHHHhc-CCceEEEEecCh
Q 006567 165 NAVSVIFVDNEY--GR---NGVSALNDKLAER-----RCRISYKSGIPPESGVNTGYVMDLLVKVAL-MESRVIVLHVSP 233 (640)
Q Consensus 165 ~~v~ii~~~~~~--g~---~~~~~~~~~~~~~-----g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~vivl~~~~ 233 (640)
-+++||...|+- |. .....+.+.+++. |.++.....++.+ ...+...+++..+ .++|+||..+..
T Consensus 6 ~rv~IistGde~~~G~~~d~n~~~l~~~l~~~~~~~~G~~v~~~~iv~Dd----~~~i~~~l~~~~~~~~~DlVittGG~ 81 (167)
T 1uuy_A 6 YKVAILTVSDTVSAGAGPDRSGPRAVSVVDSSSEKLGGAKVVATAVVPDE----VERIKDILQKWSDVDEMDLILTLGGT 81 (167)
T ss_dssp EEEEEEEECHHHHTTSSCCSHHHHHHHHHHHTTTTTTSEEEEEEEEECSC----HHHHHHHHHHHHHTSCCSEEEEESCC
T ss_pred cEEEEEEECCcccCCCCccCcHHHHHHHHHhccccCCCcEEeEEEEcCCC----HHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 467777754431 11 1234556667666 8888776666643 6778888888765 478999887432
Q ss_pred -----hhHHHHHHHH
Q 006567 234 -----SLGFQVFSVA 243 (640)
Q Consensus 234 -----~~~~~il~~a 243 (640)
+.....++++
T Consensus 82 g~g~~D~t~~a~~~~ 96 (167)
T 1uuy_A 82 GFTPRDVTPEATKKV 96 (167)
T ss_dssp SSSTTCCHHHHHHHH
T ss_pred CCCCCCchHHHHHHH
Confidence 3344555444
No 343
>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A
Probab=28.21 E-value=1.7e+02 Score=29.55 Aligned_cols=86 Identities=21% Similarity=0.103 Sum_probs=56.0
Q ss_pred HHHHHHHHhcCCcEEEEEEEcCCCCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecC
Q 006567 153 TAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVS 232 (640)
Q Consensus 153 ~al~~ll~~~~w~~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~ 232 (640)
..++...... -.-+.++. |..|.....+.+++.-+.-++.|.....+ . ..+ ++.+.+..++|+|+|.+.
T Consensus 71 ~~iA~~y~~~-A~~IsvLT-d~~~F~gs~~dL~~vr~~v~lPvLrKDFI-~------d~~--Qi~ea~~~GAD~ILLi~a 139 (452)
T 1pii_A 71 ARIAAIYKHY-ASAISVLT-DEKYFQGSFNFLPIVSQIAPQPILCKDFI-I------DPY--QIYLARYYQADACLLMLS 139 (452)
T ss_dssp HHHHHHHTTT-CSEEEEEC-CSTTTCCCTTHHHHHHHHCCSCEEEESCC-C------SHH--HHHHHHHTTCSEEEEETT
T ss_pred HHHHHHHHhh-CcEEEEEe-cccccCCCHHHHHHHHHhcCCCeEEEecc-C------CHH--HHHHHHHcCCCEEEEEcc
Confidence 4455544444 55666665 55666666676766555555666543322 1 123 466688999999999854
Q ss_pred h---hhHHHHHHHHHHcCCc
Q 006567 233 P---SLGFQVFSVAKYLGMM 249 (640)
Q Consensus 233 ~---~~~~~il~~a~~~gl~ 249 (640)
. .+...+++.|+++||.
T Consensus 140 ~l~~~~l~~l~~~a~~lgm~ 159 (452)
T 1pii_A 140 VLDDDQYRQLAAVAHSLEMG 159 (452)
T ss_dssp TCCHHHHHHHHHHHHHTTCE
T ss_pred cCCHHHHHHHHHHHHHcCCe
Confidence 3 5688999999999985
No 344
>3cij_A UPF0100 protein AF_0094; archaeal periplasmic binding protein, unknown function, metal binding protein, transport protein; 1.07A {Archaeoglobus fulgidus} PDB: 2ons_A 2onk_E 2onr_A
Probab=28.20 E-value=53 Score=30.96 Aligned_cols=71 Identities=10% Similarity=0.042 Sum_probs=46.8
Q ss_pred eHHHHHHHHHhC-CCCccEEEEEcCCCCCCCCHhhHHHHHHc-Cc-ccEEEeeeeeec---cccceEEeCccccccceEE
Q 006567 494 CIDVFTAAVNLL-PYAVPYQFVAFGDGHKNPSYTQLVDSITT-GV-FDAVVGDITIVT---NRTKIVDFSQPYAASGLVV 567 (640)
Q Consensus 494 ~~dl~~~i~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~-~D~~~~~~~~t~---~R~~~vdfs~p~~~~~~~i 567 (640)
.-++++.+.++. |+++++.+ +....++..+.. |. +|+.++.-.... .....++...||....+++
T Consensus 19 ~~~l~~~F~~~~~gi~V~~~~---------~~s~~l~~~i~~~g~~~Dv~~~a~~~~~~~l~~~gl~~~~~~~~~~~lvl 89 (295)
T 3cij_A 19 MKAFKRAFEEKHPNVEVQTEA---------AGSAATIRKVTELGRKADVIATADYTLIQKMMYPEFANWTIMFAKNQIVL 89 (295)
T ss_dssp HHHHHHHHHHHCTTCEEEEEE---------ECHHHHHHHHHTSCCCCSEEEESSTHHHHHHHTTTTCCCCEEEEECCEEE
T ss_pred HHHHHHHHHHHCCCceEEEEe---------CcHHHHHHHHHhCCCCCCEEEEcChhhHHHHHhCCCcceeeEEEeeeEEE
Confidence 346777777774 88865544 447788899988 74 999976422111 1223334557888889999
Q ss_pred EEecCC
Q 006567 568 VVPFRK 573 (640)
Q Consensus 568 l~~~~~ 573 (640)
++++..
T Consensus 90 ~~~~~~ 95 (295)
T 3cij_A 90 AYRNDS 95 (295)
T ss_dssp EECTTS
T ss_pred EEeCCC
Confidence 998764
No 345
>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=28.15 E-value=1.8e+02 Score=27.75 Aligned_cols=131 Identities=10% Similarity=0.123 Sum_probs=72.5
Q ss_pred EEEEEEeecCCccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcCcEEEE--cCCChHHH
Q 006567 32 VNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAII--GPQCSTVA 109 (640)
Q Consensus 32 i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aii--Gp~~s~~~ 109 (640)
-.|+.+|...+ ...+..|+.|+.++ +|..+.+...+++-.-.+.+.-..+.++.-+++|+ .+. .
T Consensus 46 k~la~lF~e~S---TRTR~SFE~A~~~L-------Gg~~i~l~~~~ss~~kgEsl~DTarvls~~~D~iviR~~~----~ 111 (309)
T 4f2g_A 46 RTLAMIFEKSS---TRTRLSFEAGIFQL-------GGHAVFMSTRDTQLGRGEPVEDSAQVISRMVDIIMIRTFE----Q 111 (309)
T ss_dssp CEEEEEESSCC---HHHHHHHHHHHHHT-------TCEEEEECCSSCEETBEECHHHHHHHHHHHCSEEEEECSC----H
T ss_pred ceEEEEecCCC---hhhHhhHHHHHHHc-------CCeEEEcCcccccCCCCCCHHHHHHHHHHhCCEEEEecCC----H
Confidence 35888888764 34688999999885 35555443333221111111112222222244444 332 2
Q ss_pred HHHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHH---Hhc---CCcEEEEEEEcCCCCcccHHH
Q 006567 110 HIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMV---SYY---GWNAVSVIFVDNEYGRNGVSA 183 (640)
Q Consensus 110 ~~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll---~~~---~w~~v~ii~~~~~~g~~~~~~ 183 (640)
..+..++...++|+|.-+ + +..+| .++++|++ +++ ...+|+++. | +...+..
T Consensus 112 ~~~~~lA~~~~vPVINag-~-----~~~HP------------tQaLaDl~Ti~e~~g~l~glkva~vG--D--~~~va~S 169 (309)
T 4f2g_A 112 DIIQRFAENSRVPVINGL-T-----NEYHP------------CQVLADIFTYYEHRGPIRGKTVAWVG--D--ANNMLYT 169 (309)
T ss_dssp HHHHHHHHTCSSCEEEEE-C-----SSCCH------------HHHHHHHHHHHHHHSCCTTCEEEEES--C--CCHHHHH
T ss_pred HHHHHHHHhCCCCEEECC-C-----CccCc------------HHHHHHHHHHHHHhCCCCCCEEEEEC--C--CcchHHH
Confidence 334556667789999743 2 12233 37888864 233 446777774 2 2446777
Q ss_pred HHHHHhhcCeEEEEe
Q 006567 184 LNDKLAERRCRISYK 198 (640)
Q Consensus 184 ~~~~~~~~g~~v~~~ 198 (640)
+...+...|.++...
T Consensus 170 l~~~~~~~G~~v~~~ 184 (309)
T 4f2g_A 170 WIQAARILDFKLQLS 184 (309)
T ss_dssp HHHHHHHHTCEEEEE
T ss_pred HHHHHHHcCCEEEEE
Confidence 777888888776654
No 346
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=28.10 E-value=76 Score=29.49 Aligned_cols=78 Identities=5% Similarity=-0.174 Sum_probs=47.8
Q ss_pred cEEEEEEEc------CCCCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecChhhHHH
Q 006567 165 NAVSVIFVD------NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQ 238 (640)
Q Consensus 165 ~~v~ii~~~------~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~ 238 (640)
++|+++..+ +.|.....+.+++.+++.|..+..... . .+.......++.+...+.|.||+....... .
T Consensus 5 ~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~--~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~-~ 78 (287)
T 3bbl_A 5 FMIGYSWTQTEPGQVNHILDQFLSSMVREAGAVNYFVLPFPF---S--EDRSQIDIYRDLIRSGNVDGFVLSSINYND-P 78 (287)
T ss_dssp CEEEECCCCCCTTCSCCTHHHHHHHHHHHHHHTTCEEEECCC---C--SSTTCCHHHHHHHHTTCCSEEEECSCCTTC-H
T ss_pred eEEEEEecccccccCChhHHHHHHHHHHHHHHcCCEEEEEeC---C--CchHHHHHHHHHHHcCCCCEEEEeecCCCc-H
Confidence 367776643 346666778888889899988764321 1 112223456777778889998887533221 4
Q ss_pred HHHHHHHcCC
Q 006567 239 VFSVAKYLGM 248 (640)
Q Consensus 239 il~~a~~~gl 248 (640)
.++.+.+.|.
T Consensus 79 ~~~~l~~~~i 88 (287)
T 3bbl_A 79 RVQFLLKQKF 88 (287)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHhcCC
Confidence 5566666554
No 347
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=28.01 E-value=26 Score=31.34 Aligned_cols=30 Identities=17% Similarity=0.225 Sum_probs=25.0
Q ss_pred cEEEEcCCChHHHHHHHHhhccCCceEEec
Q 006567 97 IVAIIGPQCSTVAHIVSYVSNELQVPLLSF 126 (640)
Q Consensus 97 v~aiiGp~~s~~~~~v~~~~~~~~iP~is~ 126 (640)
+.+++||.+++=......++..+++|+||.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~ist 31 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHIST 31 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEcH
Confidence 467899999877666788889999999985
No 348
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=27.97 E-value=55 Score=30.55 Aligned_cols=80 Identities=5% Similarity=0.016 Sum_probs=44.9
Q ss_pred CcEEEEEEE--cCCCCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecChhhHHHHHH
Q 006567 164 WNAVSVIFV--DNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQVFS 241 (640)
Q Consensus 164 w~~v~ii~~--~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~il~ 241 (640)
-.+|+++.. ++.|.......+++.+++.|..+.... ... .+.......++.+...+.|.||+...... ...++
T Consensus 8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~--~~~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~ 82 (290)
T 3clk_A 8 SNVIAAVVSSVRTNFAQQILDGIQEEAHKNGYNLIIVY--SGS--ADPEEQKHALLTAIERPVMGILLLSIALT-DDNLQ 82 (290)
T ss_dssp CCEEEEECCCCSSSHHHHHHHHHHHHHHTTTCEEEEEC--------------CHHHHHHSSCCSEEEEESCC-----CHH
T ss_pred CCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEEe--CCC--CCHHHHHHHHHHHHhcCCCEEEEecccCC-HHHHH
Confidence 357888875 355666777888889999998876430 111 11222344667777788999888754322 24455
Q ss_pred HHHHcCC
Q 006567 242 VAKYLGM 248 (640)
Q Consensus 242 ~a~~~gl 248 (640)
.+.+.|.
T Consensus 83 ~l~~~~i 89 (290)
T 3clk_A 83 LLQSSDV 89 (290)
T ss_dssp HHHCC--
T ss_pred HHHhCCC
Confidence 5655443
No 349
>1js1_X Transcarbamylase; alpha/beta topology, two domains, transferase; 2.00A {Bacteroides fragilis} SCOP: c.78.1.1 c.78.1.1 PDB: 2fg6_X* 2fg7_X* 2g7m_X*
Probab=27.94 E-value=3.2e+02 Score=26.14 Aligned_cols=136 Identities=10% Similarity=0.086 Sum_probs=73.6
Q ss_pred EEEEEEeecCCccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCC------------hHHHHHHHHHhHhcCcEE
Q 006567 32 VNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCS------------GFIGMVEALRFMETDIVA 99 (640)
Q Consensus 32 i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~------------~~~a~~~a~~l~~~~v~a 99 (640)
-.|+.+|-..+ ...+..|+.|+.++ +|..+.+...+++-. -.+.+.-..+.++.-+++
T Consensus 37 k~l~~lF~epS---TRTR~SFe~A~~~L-------Gg~~i~l~~~~ss~~~e~~~g~~m~~~kgEsl~DTarvLs~y~D~ 106 (324)
T 1js1_X 37 KTLLMIFFNSS---LRTRLSTQKAALNL-------GMNVIVLDINQGAWKLETERGVIMDGDKPEHLLEAIPVMGCYCDI 106 (324)
T ss_dssp CEEEEEESSCC---SHHHHHHHHHHHHT-------TCEEEEEECCGGGCCEECCSSCCCCSSCCEEHHHHHHHHHHTCSE
T ss_pred CEEEEEecCCC---cchHHHHHHHHHHc-------CCEEEEECCCCCceeeccccccccccCCCCCHHHHHHHHHHhCcE
Confidence 46788887754 24689999999986 344454443332211 111222222333332343
Q ss_pred EE--cCCCh------HHHHHHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHH---HhcC---Cc
Q 006567 100 II--GPQCS------TVAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMV---SYYG---WN 165 (640)
Q Consensus 100 ii--Gp~~s------~~~~~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll---~~~~---w~ 165 (640)
|+ .+.+- .....+..++...++|+|.- .+ +...| .++++|++ +++| .+
T Consensus 107 IviR~~~~~~~~~~~~~~~~~~~lA~~~~vPVINa--~~----~~~HP------------tQaLaDl~Ti~e~~g~~~l~ 168 (324)
T 1js1_X 107 IGVRSFARFENREYDYNEVIINQFIQHSGRPVFSM--EA----ATRHP------------LQSFADLITIEEYKKTARPK 168 (324)
T ss_dssp EEEECCCCSSCHHHHHHTHHHHHHHHHSSSCEEES--SC----SSCCH------------HHHHHHHHHHHHHCSSSSCE
T ss_pred EEEecccccccccccccchHHHHHHhhCCCCEEEC--CC----CCCCc------------HHHHHHHHHHHHHcCCCCee
Confidence 33 32100 02333556667778999972 22 11233 38888864 3466 34
Q ss_pred EEEEEE-----EcCCCCcccHHHHHHHHhhcCeEEEEee
Q 006567 166 AVSVIF-----VDNEYGRNGVSALNDKLAERRCRISYKS 199 (640)
Q Consensus 166 ~v~ii~-----~~~~~g~~~~~~~~~~~~~~g~~v~~~~ 199 (640)
+.+.+ -.| ...+..+-..+...|.++....
T Consensus 169 -l~ia~a~~~~vGD---~rva~Sl~~~~~~~G~~v~~~~ 203 (324)
T 1js1_X 169 -VVMTWAPHPRPLP---QAVPNSFAEWMNATDYEFVITH 203 (324)
T ss_dssp -EEEECCCCSSCCC---SHHHHHHHHHHHTSSSEEEEEC
T ss_pred -EEEEEEcccccCC---cchHHHHHHHHHHCCCEEEEeC
Confidence 44444 233 3567778888888898876543
No 350
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=27.68 E-value=1.4e+02 Score=30.34 Aligned_cols=144 Identities=10% Similarity=0.007 Sum_probs=87.5
Q ss_pred ChHHHHHHHHHhHhcCcEEEE-cC-CCh--H-----HHHHHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHH
Q 006567 81 SGFIGMVEALRFMETDIVAII-GP-QCS--T-----VAHIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQ 151 (640)
Q Consensus 81 ~~~~a~~~a~~l~~~~v~aii-Gp-~~s--~-----~~~~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~ 151 (640)
.+..+...+.++++.|+.+++ -+ .-+ . ....+...+...++.+|.+.+.. +-+.....-....|..
T Consensus 73 p~~~~~~~v~e~~~~Gi~~vv~~s~G~~e~g~~g~~~~~~l~~~a~~~g~~viGPnc~G--v~~~~~~~~~~~~~~~--- 147 (457)
T 2csu_A 73 PKRFVKDTLIQCGEKGVKGVVIITAGFGETGEEGKREEKELVEIAHKYGMRIIGPNCVG--IMNTHVDLNATFITVA--- 147 (457)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHHHTCEEECSSCCE--EEEGGGTEEEESSCCC---
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCccccccHHHHHHHHHHHHHcCCEEEcCCcce--EEccCCCceeeecCCC---
Confidence 456666777777777776443 22 111 1 25567788889999999765532 2110001112222221
Q ss_pred HHHHHHHHHhcCCcEEEEEEEcCCCCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhc-CCceEEEEe
Q 006567 152 MTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVAL-MESRVIVLH 230 (640)
Q Consensus 152 ~~al~~ll~~~~w~~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~vivl~ 230 (640)
.. -+|++|..... ....+...+.+.|+-++....+.-. ...++.+.++.+.+ .+.++|+++
T Consensus 148 ---------~~--G~v~~vsqSG~----~~~~~~~~~~~~g~G~s~~vs~G~~---~~~~~~d~l~~~~~D~~t~~I~l~ 209 (457)
T 2csu_A 148 ---------KK--GNVAFISQSGA----LGAGIVYKTIKEDIGFSKFISVGNM---ADVDFAELMEYLADTEEDKAIALY 209 (457)
T ss_dssp ---------EE--CSEEEEESCHH----HHHHHHHHHHHTTCEESEEEECTTC---CSSCHHHHHHHHTTCSSCCEEEEE
T ss_pred ---------CC--CCEEEEeCCHH----HHHHHHHHHHhcCCCeeEEEECCCc---CCCCHHHHHHHHhcCCCCCEEEEE
Confidence 11 46888875442 4556666777777766655444432 25567788888866 578999999
Q ss_pred cCh-hhHHHHHHHHHHcC
Q 006567 231 VSP-SLGFQVFSVAKYLG 247 (640)
Q Consensus 231 ~~~-~~~~~il~~a~~~g 247 (640)
... .+.+.+++.|+...
T Consensus 210 ~E~i~~~~~f~~~a~~~~ 227 (457)
T 2csu_A 210 IEGVRNGKKFMEVAKRVT 227 (457)
T ss_dssp ESCCSCHHHHHHHHHHHH
T ss_pred EecCCCHHHHHHHHHHhc
Confidence 887 67888888888764
No 351
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=27.33 E-value=1.1e+02 Score=28.31 Aligned_cols=64 Identities=9% Similarity=0.044 Sum_probs=43.6
Q ss_pred CcEEEEEEEc--CCCCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecC
Q 006567 164 WNAVSVIFVD--NEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVS 232 (640)
Q Consensus 164 w~~v~ii~~~--~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~ 232 (640)
-.+|+++..+ +.|.....+.+++.+++.|..+..... . .+.......++.+...+.|.||+...
T Consensus 7 ~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~--~~~~~~~~~~~~l~~~~vdgii~~~~ 72 (289)
T 1dbq_A 7 TKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNA---W--NNLEKQRAYLSMMAQKRVDGLLVMCS 72 (289)
T ss_dssp -CEEEEEESCTTSHHHHHHHHHHHHHHHHHTCEEEEEEC---T--TCHHHHHHHHHHHHHTTCSEEEEECS
T ss_pred CCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEEcC---C--CChHHHHHHHHHHHhCCCCEEEEEec
Confidence 3578888753 456666778888888889988765321 1 22445566777888888998888643
No 352
>3cfx_A UPF0100 protein MA_0280; ABC transporter, binding protein, molybdate, tungstate, LIGA unknown function, transport protein; 1.60A {Methanosarcina acetivorans}
Probab=27.16 E-value=64 Score=30.42 Aligned_cols=71 Identities=13% Similarity=0.072 Sum_probs=46.4
Q ss_pred eHHHHHHHHHh-CCCCccEEEEEcCCCCCCCCHhhHHHHHHc-Cc-ccEEEeeeeeec---cccceEEeCccccccceEE
Q 006567 494 CIDVFTAAVNL-LPYAVPYQFVAFGDGHKNPSYTQLVDSITT-GV-FDAVVGDITIVT---NRTKIVDFSQPYAASGLVV 567 (640)
Q Consensus 494 ~~dl~~~i~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~-~D~~~~~~~~t~---~R~~~vdfs~p~~~~~~~i 567 (640)
.-++++.+.++ -|+++++.+ +....++..+.. |. +|+.+++-.... .....++...||....+++
T Consensus 19 ~~~l~~~F~~~~~gi~V~~~~---------~~s~~l~~~i~~~g~~~Dv~~~a~~~~~~~l~~~gl~~~~~~~~~~~l~i 89 (296)
T 3cfx_A 19 FEELEAEFEAQHPGVDVQREA---------AGSAQSVRKITELGKKADVLASADYALIPSLMVPEYADWYAAFARNQMIL 89 (296)
T ss_dssp HHHHHHHHHHHSTTCEEEEEE---------CCHHHHHHHHHTSCCCCSEEEESSTTHHHHHTTTTTCSCEEEEEECCEEE
T ss_pred HHHHHHHHHHHCCCceEEEEe---------CchHHHHHHHHhCCCCCcEEEECChhhHHHHHhCCCccceeeeEeeeEEE
Confidence 34677888787 488855543 557888899988 64 999876422111 1222334456778888999
Q ss_pred EEecCC
Q 006567 568 VVPFRK 573 (640)
Q Consensus 568 l~~~~~ 573 (640)
++++..
T Consensus 90 ~~~~~~ 95 (296)
T 3cfx_A 90 AYTNES 95 (296)
T ss_dssp EECTTS
T ss_pred EEeCCC
Confidence 997764
No 353
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=27.12 E-value=1.4e+02 Score=27.00 Aligned_cols=115 Identities=18% Similarity=0.085 Sum_probs=62.3
Q ss_pred EEEEEeec--CCccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcCcEEEEcCCChHHHH
Q 006567 33 NVGALFTL--DSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIGPQCSTVAH 110 (640)
Q Consensus 33 ~IG~l~~~--~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aiiGp~~s~~~~ 110 (640)
+||++... +.........|++.|+++.+ + + . .. .....+...+.+++.+++..++.||+...+. .+.
T Consensus 117 ~I~~i~~~~~~~~~~~~R~~gf~~al~~~g----~-~-~--~~--~~~~~~~~~~~~~~~~~l~~~~~ai~~~~d~-~A~ 185 (255)
T 1byk_A 117 NISYLGVPHSDVTTGKRRHEAYLAFCKAHK----L-H-P--VA--ALPGLAMKQGYENVAKVITPETTALLCATDT-LAL 185 (255)
T ss_dssp CEEEECCCTTSTTTTHHHHHHHHHHHHHTT----C-C-C--EE--ECCCSCHHHHHHHSGGGCCTTCCEEEESSHH-HHH
T ss_pred eEEEEecCCCCcccHHHHHHHHHHHHHHcC----C-C-c--ce--eecCCccchHHHHHHHHhcCCCCEEEEeChH-HHH
Confidence 57777643 22334556788888887642 2 1 1 22 1233455666666666666678899875433 333
Q ss_pred HHHHhhcc---CCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHH
Q 006567 111 IVSYVSNE---LQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVS 160 (640)
Q Consensus 111 ~v~~~~~~---~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~ 160 (640)
.+...+.. .++.++++.... ......|.+..+..+...+++..+++|.
T Consensus 186 g~~~al~~~g~~di~vig~d~~~--~~~~~~p~lttv~~~~~~~g~~a~~~l~ 236 (255)
T 1byk_A 186 GASKYLQEQRIDTLQLASVGNTP--LMKFLHPEIVTVDPGYAEAGRQAACQLI 236 (255)
T ss_dssp HHHHHHHHTTCCSCEEEEECCCH--HHHHHCTTSEEEBCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcEEEEEeCCch--hhhccCCCcceEecCHHHHHHHHHHHHH
Confidence 33333333 357777764321 1111124445555666777777777543
No 354
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=26.98 E-value=22 Score=32.09 Aligned_cols=31 Identities=13% Similarity=0.169 Sum_probs=26.5
Q ss_pred CcEEEEcCCChHHHHHHHHhhccCCceEEec
Q 006567 96 DIVAIIGPQCSTVAHIVSYVSNELQVPLLSF 126 (640)
Q Consensus 96 ~v~aiiGp~~s~~~~~v~~~~~~~~iP~is~ 126 (640)
++..|+||.+++=......++..+++|+||.
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~~g~~hIst 60 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQKFHFNHLSS 60 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHHCCEEECH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHCCceEcH
Confidence 7889999999987766778889999999974
No 355
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=26.23 E-value=22 Score=32.64 Aligned_cols=19 Identities=26% Similarity=0.441 Sum_probs=14.3
Q ss_pred HHHHHHHHhcCCceEEEEe
Q 006567 212 VMDLLVKVALMESRVIVLH 230 (640)
Q Consensus 212 ~~~~l~~l~~~~~~vivl~ 230 (640)
..+.++.+.....|+++..
T Consensus 168 ~~~~~~~l~~G~vDa~~~~ 186 (268)
T 3qax_A 168 TLEVIMEVRYGKSPVAVLE 186 (268)
T ss_dssp HHHHHHHHHTTSSSEEEEC
T ss_pred HHHHHHHHHcCCCCEEEec
Confidence 4567778888888987765
No 356
>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A
Probab=26.05 E-value=3.8e+02 Score=25.33 Aligned_cols=135 Identities=16% Similarity=0.137 Sum_probs=74.0
Q ss_pred EEEEEEeecCCccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhc-CcEEEEc-CCChHHH
Q 006567 32 VNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMET-DIVAIIG-PQCSTVA 109 (640)
Q Consensus 32 i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~-~v~aiiG-p~~s~~~ 109 (640)
-.|+.+|...+. ..+..|+.|+.++ +|..+.+...+++-.-.+.+.-..+-++. ++++|+- .......
T Consensus 37 k~la~lF~e~ST---RTR~SFE~A~~~L-------Gg~~i~l~~~~ss~~kgEsl~DTarvLs~~~~D~iviR~~~~~~~ 106 (304)
T 3r7f_A 37 KFAANLFFEPST---RTRFSFEVAEKKL-------GMNVLNLDGTSTSVQKGETLYDTIRTLESIGVDVCVIRHSEDEYY 106 (304)
T ss_dssp CEEEEEESSCCS---HHHHHHHHHHHHT-------TCEEEEEETTSTTSCSSSCHHHHHHHHHHHTCCEEEEECSSTTCH
T ss_pred CEEEEEecCCCh---hHHHhHHHHHHHC-------CCeEEEECcccccCCCCCCHHHHHHHHHHhcCCEEEEecCChhHH
Confidence 357888887642 4588999999885 45666664444332111222222233333 4555553 2222333
Q ss_pred HHHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHH---Hhc---CCcEEEEEEEcCCCCcccHHH
Q 006567 110 HIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMV---SYY---GWNAVSVIFVDNEYGRNGVSA 183 (640)
Q Consensus 110 ~~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll---~~~---~w~~v~ii~~~~~~g~~~~~~ 183 (640)
..++...++|+|.-+.++ ..+| .++++|++ +++ ...+|+++. |.-....+..
T Consensus 107 ---~~la~~~~vPVINagdg~-----~~HP------------tQaLaDl~Ti~e~~g~l~glkva~vG--D~~~~rva~S 164 (304)
T 3r7f_A 107 ---EELVSQVNIPILNAGDGC-----GQHP------------TQSLLDLMTIYEEFNTFKGLTVSIHG--DIKHSRVARS 164 (304)
T ss_dssp ---HHHHHHCSSCEEESCCTT-----SCCH------------HHHHHHHHHHHHHHSCCTTCEEEEES--CCTTCHHHHH
T ss_pred ---HHHHHhCCCCEEeCCCCC-----CcCc------------HHHHHHHHHHHHHhCCCCCCEEEEEc--CCCCcchHHH
Confidence 334456689999732111 1223 37888864 233 345777664 3222246777
Q ss_pred HHHHHhhcCeEEEEe
Q 006567 184 LNDKLAERRCRISYK 198 (640)
Q Consensus 184 ~~~~~~~~g~~v~~~ 198 (640)
+-..+...|.++...
T Consensus 165 l~~~~~~~G~~v~~~ 179 (304)
T 3r7f_A 165 NAEVLTRLGARVLFS 179 (304)
T ss_dssp HHHHHHHTTCEEEEE
T ss_pred HHHHHHHcCCEEEEE
Confidence 777788888877654
No 357
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=26.03 E-value=3.4e+02 Score=25.94 Aligned_cols=74 Identities=11% Similarity=0.003 Sum_probs=47.7
Q ss_pred CcEEEEEEEcCCCCc----ccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecChhhHHHH
Q 006567 164 WNAVSVIFVDNEYGR----NGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQV 239 (640)
Q Consensus 164 w~~v~ii~~~~~~g~----~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~i 239 (640)
.+++.+|+ |...|. ..++.+.+.+++.|+.+.....-. ..+.....+++...+.|.||..+....+..+
T Consensus 24 m~~i~vI~-NP~sg~~~~~~~~~~i~~~L~~~g~~~~~~~t~~------~~~a~~~~~~~~~~~~d~vvv~GGDGTv~~v 96 (337)
T 2qv7_A 24 RKRARIIY-NPTSGKEQFKRELPDALIKLEKAGYETSAYATEK------IGDATLEAERAMHENYDVLIAAGGDGTLNEV 96 (337)
T ss_dssp CEEEEEEE-CTTSTTSCHHHHHHHHHHHHHHTTEEEEEEECCS------TTHHHHHHHHHTTTTCSEEEEEECHHHHHHH
T ss_pred cceEEEEE-CCCCCCCchHHHHHHHHHHHHHcCCeEEEEEecC------cchHHHHHHHHhhcCCCEEEEEcCchHHHHH
Confidence 46788887 333332 335677888888888776543222 2244455666666778888888777777777
Q ss_pred HHHHH
Q 006567 240 FSVAK 244 (640)
Q Consensus 240 l~~a~ 244 (640)
+..+.
T Consensus 97 ~~~l~ 101 (337)
T 2qv7_A 97 VNGIA 101 (337)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 77763
No 358
>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, O form J, domain movement, cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*
Probab=25.95 E-value=1.5e+02 Score=29.46 Aligned_cols=96 Identities=13% Similarity=0.031 Sum_probs=59.7
Q ss_pred HHhcCCcEEEEEEEcCCCCcccHHHHHHHHhhc------CeEEEEeeccCCCC-CCChhHHHHHHHHHhcCC--c---eE
Q 006567 159 VSYYGWNAVSVIFVDNEYGRNGVSALNDKLAER------RCRISYKSGIPPES-GVNTGYVMDLLVKVALME--S---RV 226 (640)
Q Consensus 159 l~~~~w~~v~ii~~~~~~g~~~~~~~~~~~~~~------g~~v~~~~~~~~~~-~~~~~~~~~~l~~l~~~~--~---~v 226 (640)
++.++.+++.+|++...... ..+.+.+.+++. |+.+.. ..++... +.+...+....+.+++.+ . +.
T Consensus 31 ~~~~~~~k~liVtd~~v~~~-~~~~v~~~L~~~~~~~~~g~~~~~-~~~~~gE~~k~~~~v~~~~~~~~~~~~~~~r~d~ 108 (393)
T 1sg6_A 31 ISDCSSTTYVLVTDTNIGSI-YTPSFEEAFRKRAAEITPSPRLLI-YNRPPGEVSKSRQTKADIEDWMLSQNPPCGRDTV 108 (393)
T ss_dssp HHHSCCSEEEEEEEHHHHHH-HHHHHHHHHHHHHHHSSSCCEEEE-EEECSSGGGSSHHHHHHHHHHHHTSSSCCCTTCE
T ss_pred HHhcCCCeEEEEECCcHHHH-HHHHHHHHHHhhhccccCCceeEE-EEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCCCE
Confidence 46677789998886543322 566777777665 666542 2344321 134567788888888877 7 88
Q ss_pred EEEec--ChhhHHHHHHHHHHcCCccCCeEEEEeC
Q 006567 227 IVLHV--SPSLGFQVFSVAKYLGMMGNGYVWIATD 259 (640)
Q Consensus 227 ivl~~--~~~~~~~il~~a~~~gl~~~~~~~i~~~ 259 (640)
||-.+ +.-|+..+.......| -.++-|-|.
T Consensus 109 iIalGGGsv~D~ak~~Aa~~~rg---ip~i~IPTT 140 (393)
T 1sg6_A 109 VIALGGGVIGDLTGFVASTYMRG---VRYVQVPTT 140 (393)
T ss_dssp EEEEESHHHHHHHHHHHHHGGGC---CEEEEEECS
T ss_pred EEEECCcHHHHHHHHHHHHhcCC---CCEEEECCc
Confidence 88653 4566666666555544 346666664
No 359
>3cfz_A UPF0100 protein MJ1186; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.70A {Methanocaldococcus jannaschii}
Probab=25.87 E-value=55 Score=30.80 Aligned_cols=72 Identities=13% Similarity=-0.003 Sum_probs=46.8
Q ss_pred eeHHHHHHHHHh-CCCCccEEEEEcCCCCCCCCHhhHHHHHHc-Cc-ccEEEeeeeeecc---ccceEEeCccccccceE
Q 006567 493 FCIDVFTAAVNL-LPYAVPYQFVAFGDGHKNPSYTQLVDSITT-GV-FDAVVGDITIVTN---RTKIVDFSQPYAASGLV 566 (640)
Q Consensus 493 ~~~dl~~~i~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~-~D~~~~~~~~t~~---R~~~vdfs~p~~~~~~~ 566 (640)
..-++++.+.++ -|+++++.+ +....++..+.+ |. +|+.+++-....+ ....++...||....++
T Consensus 18 ~~~~l~~~F~~~~~gi~V~~~~---------~~s~~l~~~i~~~g~~~Dv~~~a~~~~~~~l~~~gl~~~~~~~~~~~lv 88 (292)
T 3cfz_A 18 PFEEYEKMFEKEHPNVDVEREP---------AGSVACVRKIIDLGKKADILASADYSLIPQMMMPKYADWYVMFARNEIV 88 (292)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEE---------ECHHHHHHHHHTSCCCCSEEEESSTTHHHHHTTTTTCSCCEEEEECCEE
T ss_pred HHHHHHHHHHHHCCCceEEEEe---------CCHHHHHHHHHhcCCCCcEEEECChHHHHHHHhCCCccceeeeEeccEE
Confidence 334677777777 488855544 457789999988 64 9998764221111 12233445678888899
Q ss_pred EEEecCC
Q 006567 567 VVVPFRK 573 (640)
Q Consensus 567 il~~~~~ 573 (640)
+++++..
T Consensus 89 i~~~~~~ 95 (292)
T 3cfz_A 89 LAYTDKS 95 (292)
T ss_dssp EEECTTS
T ss_pred EEEcCCC
Confidence 9998754
No 360
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=25.84 E-value=2.3e+02 Score=21.87 Aligned_cols=57 Identities=16% Similarity=0.189 Sum_probs=37.2
Q ss_pred cHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecC--hhhHHHHHHHHHHcC
Q 006567 180 GVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVS--PSLGFQVFSVAKYLG 247 (640)
Q Consensus 180 ~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~--~~~~~~il~~a~~~g 247 (640)
....+.+.+++.|..+... .+....+..+....+++|++... ..+...++++.++..
T Consensus 18 ~~~~l~~~L~~~g~~v~~~-----------~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~ 76 (132)
T 3lte_A 18 MAAAIERVLKRDHWQVEIA-----------HNGFDAGIKLSTFEPAIMTLDLSMPKLDGLDVIRSLRQNK 76 (132)
T ss_dssp HHHHHHHHHHHTTCEEEEE-----------SSHHHHHHHHHHTCCSEEEEESCBTTBCHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHCCcEEEEe-----------CCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcC
Confidence 4667777787777765522 12334555666678999998743 345677888887754
No 361
>3mw8_A Uroporphyrinogen-III synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 1.65A {Shewanella amazonensis}
Probab=25.63 E-value=32 Score=31.47 Aligned_cols=86 Identities=10% Similarity=0.056 Sum_probs=49.8
Q ss_pred HHHHHHHHHHh--cCCcEEEEEEEcCCCCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEE
Q 006567 151 QMTAVAEMVSY--YGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIV 228 (640)
Q Consensus 151 ~~~al~~ll~~--~~w~~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~viv 228 (640)
-++.+++++.. ..-++|.++..+. ....+.+.+++.|..|.....|... ....+.......+...+.|+ |
T Consensus 105 ~~e~L~~~~~~~~~~g~~vL~~rg~~-----~r~~l~~~L~~~G~~v~~~~~Y~~~--~~~~~~~~~~~~l~~~~~d~-v 176 (240)
T 3mw8_A 105 ATEGLLTLPSLEQVSGKQIVIVRGKG-----GREAMADGLRLRGANVSYLEVYQRA--CPPLDAPASVSRWQSFGIDT-I 176 (240)
T ss_dssp CGGGGGGCGGGTCCTTCEEEEEEESS-----SCCHHHHHHHHTTCEEEEEEEEEEE--CCCCCHHHHHHHHHHHTCCE-E
T ss_pred CHHHHHHhhhhccCCCCEEEEEeCCC-----cHHHHHHHHHHCCCEEEEEEEEEee--CCCCCHHHHHHHHHhCCCCE-E
Confidence 35666665543 3457887776543 3456778888889887655444432 11112222333344445665 5
Q ss_pred EecChhhHHHHHHHHH
Q 006567 229 LHVSPSLGFQVFSVAK 244 (640)
Q Consensus 229 l~~~~~~~~~il~~a~ 244 (640)
++.++..+..+++.+.
T Consensus 177 ~ftS~s~v~~~~~~~~ 192 (240)
T 3mw8_A 177 VVTSGEVLENLINLVP 192 (240)
T ss_dssp ECCSHHHHHHHHHHSC
T ss_pred EEcCHHHHHHHHHHcc
Confidence 6677888888887653
No 362
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=25.53 E-value=2e+02 Score=26.37 Aligned_cols=120 Identities=15% Similarity=0.112 Sum_probs=65.1
Q ss_pred EEEEEeecC-CccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhc--CcEEEEcCCChHHH
Q 006567 33 NVGALFTLD-STIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMET--DIVAIIGPQCSTVA 109 (640)
Q Consensus 33 ~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~--~v~aiiGp~~s~~~ 109 (640)
+|+++.... .........|++.|+++.+-.. ... . +.....+...+.+.+.+++.. ++.||+...+ ..+
T Consensus 129 ~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~---~~~---~-~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d-~~a 200 (289)
T 3g85_A 129 SAAAILTESLNDAMDNRNKGFIETCHKNGIKI---SEN---H-IIAAENSIHGGVDAAKKLMKLKNTPKALFCNSD-SIA 200 (289)
T ss_dssp BCEEEECCCSSHHHHHHHHHHHHHHHHTTCBC---CGG---G-EEECCSSHHHHHHHHHHHTTSSSCCSEEEESSH-HHH
T ss_pred EEEEEeCCcccccHHHHHHHHHHHHHHcCCCC---Chh---h-eeccCCCHHHHHHHHHHHHcCCCCCcEEEEcCC-HHH
Confidence 567776543 2223445678888877743211 000 1 113345666777778888875 6889997543 334
Q ss_pred HHHHHhhccCC--ce----EEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHH
Q 006567 110 HIVSYVSNELQ--VP----LLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVS 160 (640)
Q Consensus 110 ~~v~~~~~~~~--iP----~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~ 160 (640)
..+...+...+ +| ++++...+..+.....|.+-.+..+...+++..+++|.
T Consensus 201 ~g~~~al~~~g~~vP~di~vig~d~~~~~~~~~~~p~lttv~~~~~~~g~~a~~~l~ 257 (289)
T 3g85_A 201 LGVISVLNKRQISIPDDIEIVAIGMNDREYTEFSTPPVTIVDIPIEEMAGTCISLVE 257 (289)
T ss_dssp HHHHHHHHHTTCCTTTTCEEEEEECSCHHHHHSSSSCCEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCceEEEEeCCCCcchhhccCCCCeEEcCCHHHHHHHHHHHHH
Confidence 34444444443 34 67654112222222224455566777788888887654
No 363
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=25.47 E-value=2.3e+02 Score=21.72 Aligned_cols=56 Identities=11% Similarity=0.134 Sum_probs=38.6
Q ss_pred cHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEec--ChhhHHHHHHHHHHc
Q 006567 180 GVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHV--SPSLGFQVFSVAKYL 246 (640)
Q Consensus 180 ~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~--~~~~~~~il~~a~~~ 246 (640)
....+.+.+++.|..+... .+....+..+.+..+++|++.. ...+...++++.++.
T Consensus 15 ~~~~l~~~L~~~g~~v~~~-----------~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~ 72 (127)
T 3i42_A 15 AAETFKELLEMLGFQADYV-----------MSGTDALHAMSTRGYDAVFIDLNLPDTSGLALVKQLRAL 72 (127)
T ss_dssp HHHHHHHHHHHTTEEEEEE-----------SSHHHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCCEEEE-----------CCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhh
Confidence 5677788888888765432 1234455666667899999974 445677888888876
No 364
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=25.03 E-value=2.2e+02 Score=26.53 Aligned_cols=87 Identities=15% Similarity=0.128 Sum_probs=56.6
Q ss_pred HHHHHHHHhcCCcEEEEEEEcCCCCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEe--
Q 006567 153 TAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLH-- 230 (640)
Q Consensus 153 ~al~~ll~~~~w~~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~-- 230 (640)
..++.-...-|-.-+.++. ++.|.....+.+++.-+..++.|.... +-.+ ++ ++.+.+..++|.|++.
T Consensus 75 ~~~A~~y~~~GA~~isvlt-d~~~f~Gs~~~l~~ir~~v~lPvl~kd-fiid------~~--qv~~A~~~GAD~VlLi~a 144 (272)
T 3qja_A 75 AKLAQAYQDGGARIVSVVT-EQRRFQGSLDDLDAVRASVSIPVLRKD-FVVQ------PY--QIHEARAHGADMLLLIVA 144 (272)
T ss_dssp HHHHHHHHHTTCSEEEEEC-CGGGHHHHHHHHHHHHHHCSSCEEEES-CCCS------HH--HHHHHHHTTCSEEEEEGG
T ss_pred HHHHHHHHHcCCCEEEEec-ChhhcCCCHHHHHHHHHhCCCCEEECc-cccC------HH--HHHHHHHcCCCEEEEecc
Confidence 4566667777888888776 444544445555555444556555332 2222 11 3666778999999984
Q ss_pred -cChhhHHHHHHHHHHcCCc
Q 006567 231 -VSPSLGFQVFSVAKYLGMM 249 (640)
Q Consensus 231 -~~~~~~~~il~~a~~~gl~ 249 (640)
.+..++..+++.++++||.
T Consensus 145 ~l~~~~l~~l~~~a~~lGl~ 164 (272)
T 3qja_A 145 ALEQSVLVSMLDRTESLGMT 164 (272)
T ss_dssp GSCHHHHHHHHHHHHHTTCE
T ss_pred cCCHHHHHHHHHHHHHCCCc
Confidence 3556788899999999875
No 365
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=24.80 E-value=3.9e+02 Score=24.38 Aligned_cols=83 Identities=10% Similarity=-0.013 Sum_probs=52.8
Q ss_pred cEEEEEEEcCCCCcccHHHHHHHHhhcCeEEEEee-ccCCCCCCChhHHHHHHHHHhcCCceEEEEecC----hhhHHHH
Q 006567 165 NAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKS-GIPPESGVNTGYVMDLLVKVALMESRVIVLHVS----PSLGFQV 239 (640)
Q Consensus 165 ~~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~-~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~----~~~~~~i 239 (640)
.+|.+.....+...-+..-+...++..|++|..-. ..+ . ...+..+++.++++|.+.+. ......+
T Consensus 124 ~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp------~---e~l~~~~~~~~~d~V~lS~l~~~~~~~~~~~ 194 (258)
T 2i2x_B 124 GTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVP------A---EEVLAAVQKEKPIMLTGTALMTTTMYAFKEV 194 (258)
T ss_dssp CEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECC------S---HHHHHHHHHHCCSEEEEECCCTTTTTHHHHH
T ss_pred CeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCC------H---HHHHHHHHHcCCCEEEEEeeccCCHHHHHHH
Confidence 45655555566666677778888888999876433 233 2 23455566668888888753 3456677
Q ss_pred HHHHHHcCCccCCeEEEEe
Q 006567 240 FSVAKYLGMMGNGYVWIAT 258 (640)
Q Consensus 240 l~~a~~~gl~~~~~~~i~~ 258 (640)
+++.++.|.. -.++++.
T Consensus 195 i~~l~~~~~~--~~v~vGG 211 (258)
T 2i2x_B 195 NDMLLENGIK--IPFACGG 211 (258)
T ss_dssp HHHHHTTTCC--CCEEEES
T ss_pred HHHHHhcCCC--CcEEEEC
Confidence 8888877653 3355554
No 366
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=24.59 E-value=1e+02 Score=28.79 Aligned_cols=83 Identities=13% Similarity=0.172 Sum_probs=53.6
Q ss_pred CeEEEEeecCCCccceEEeecCCcceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHhhHHHHHHcCcccEEEee-
Q 006567 465 KLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGD- 543 (640)
Q Consensus 465 ~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~~~~~- 543 (640)
++|+|++... -...+..+++..+.++.. .+++++.. .....++..|.+|++|+++..
T Consensus 101 ~~l~Ig~~~~--------------~~~~~l~~~l~~f~~~~P-~i~i~l~~-------~~~~~~~~~l~~g~~Dl~i~~~ 158 (310)
T 2esn_A 101 RTFVFAATDY--------------TAFALLPPLMNRLQHSAP-GVRLRLVN-------AERKLSVEALASGRIDFALGYD 158 (310)
T ss_dssp CEEEEECCHH--------------HHHHHHHHHHHHHHHHST-TCEEEEEC-------CSSSCCHHHHHHTSSSEEEECC
T ss_pred ceEEEEeChH--------------HHHHHHHHHHHHHHHHCC-CeEEEEEe-------CCcccHHHHHHcCCCCEEEecC
Confidence 5789888521 122455677888888774 44466655 446678899999999999864
Q ss_pred --eeeeccccceEEeCccccccceEEEEecCC
Q 006567 544 --ITIVTNRTKIVDFSQPYAASGLVVVVPFRK 573 (640)
Q Consensus 544 --~~~t~~R~~~vdfs~p~~~~~~~il~~~~~ 573 (640)
..... ..+. +.++....+.+++++..
T Consensus 159 ~~~~~~~---~~l~-~~~l~~~~~~~v~~~~~ 186 (310)
T 2esn_A 159 EEHERLP---EGIQ-AHDWFADRYVVVARRDH 186 (310)
T ss_dssp STTCCCC---TTEE-EEEEEEECEEEEEESSC
T ss_pred cccccCC---cCcc-eeeeeccceEEEEeCCC
Confidence 22211 2222 35777788888887654
No 367
>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4
Probab=24.13 E-value=3.5e+02 Score=24.74 Aligned_cols=87 Identities=17% Similarity=0.096 Sum_probs=58.5
Q ss_pred HHHHHHHHhcCCcEEEEEEEcCCCCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecC
Q 006567 153 TAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVS 232 (640)
Q Consensus 153 ~al~~ll~~~~w~~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~ 232 (640)
..++......|-+-+.++. ++.+.....+.++..-+..++.|.... +-.+ . + ++.+.+..++|.|++...
T Consensus 68 ~~~A~~~~~~GA~~isvlt-~~~~f~G~~~~l~~i~~~v~lPvl~kd-fI~d----~--~--qi~~a~~~GAD~VlL~~~ 137 (254)
T 1vc4_A 68 VEAALAYARGGARAVSVLT-EPHRFGGSLLDLKRVREAVDLPLLRKD-FVVD----P--F--MLEEARAFGASAALLIVA 137 (254)
T ss_dssp HHHHHHHHHTTCSEEEEEC-CCSSSCCCHHHHHHHHHHCCSCEEEES-CCCS----H--H--HHHHHHHTTCSEEEEEHH
T ss_pred HHHHHHHHHcCCCEEEEec-chhhhccCHHHHHHHHHhcCCCEEECC-cCCC----H--H--HHHHHHHcCCCEEEECcc
Confidence 5566667778889998765 445555566777666665566655433 2221 1 1 456678899999998742
Q ss_pred h--hhHHHHHHHHHHcCCc
Q 006567 233 P--SLGFQVFSVAKYLGMM 249 (640)
Q Consensus 233 ~--~~~~~il~~a~~~gl~ 249 (640)
. ..+..++..++++||.
T Consensus 138 ~l~~~l~~l~~~a~~lGl~ 156 (254)
T 1vc4_A 138 LLGELTGAYLEEARRLGLE 156 (254)
T ss_dssp HHGGGHHHHHHHHHHHTCE
T ss_pred chHHHHHHHHHHHHHCCCe
Confidence 2 6788889999999875
No 368
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=23.96 E-value=2.4e+02 Score=22.08 Aligned_cols=55 Identities=13% Similarity=0.036 Sum_probs=36.4
Q ss_pred cHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEec--ChhhHHHHHHHHHH
Q 006567 180 GVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHV--SPSLGFQVFSVAKY 245 (640)
Q Consensus 180 ~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~--~~~~~~~il~~a~~ 245 (640)
....+.+.+++.|..+... .+....+..++...+++|++.. ...+...++++.++
T Consensus 18 ~~~~l~~~l~~~g~~v~~~-----------~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~ 74 (140)
T 3grc_A 18 IARLLNLMLEKGGFDSDMV-----------HSAAQALEQVARRPYAAMTVDLNLPDQDGVSLIRALRR 74 (140)
T ss_dssp HHHHHHHHHHHTTCEEEEE-----------CSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCeEEEE-----------CCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 4667778888788765422 1234455666677899999874 34456777877776
No 369
>3re1_A Uroporphyrinogen-III synthetase; HEMD-like family, uroporphyrinogen III synthase, HMB, lyase; 2.50A {Pseudomonas syringae PV}
Probab=23.69 E-value=19 Score=33.73 Aligned_cols=87 Identities=14% Similarity=0.066 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHH-----hcCCcEEEEEEEcCCCCcccHHHHHHHHhhcCeEEEEeeccCCCC-CCChhHHHHHHHHHhcC
Q 006567 149 SYQMTAVAEMVS-----YYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPES-GVNTGYVMDLLVKVALM 222 (640)
Q Consensus 149 ~~~~~al~~ll~-----~~~w~~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~-~~~~~~~~~~l~~l~~~ 222 (640)
...++.+++++. ...-++|.++..+. ....+.+.+++.|..|.....|.... ......+. ..+...
T Consensus 121 ~~~~e~L~~~l~l~~~~~~~g~~vLi~rg~~-----~r~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~---~~l~~~ 192 (269)
T 3re1_A 121 GDDSEALLDHPRLKQAIAVPGSRVLIMRGNE-----GRELLAEQLRERGVGVDYLPLYRRYLPQHAPGTLL---QRVEVE 192 (269)
T ss_dssp -----CGGGCHHHHHHHCSSSCEEEEEECSS-----CCCHHHHHHHHTTCEEEEEECEEEECCCCCTTTTH---HHHHHT
T ss_pred CCCHHHHHHhhhhcccccCCCCEEEEEccCc-----cHHHHHHHHHHCCCEEEEEeEEEEECCCCCHHHHH---HHHHcC
Confidence 334667777654 34567887765433 34566788888998876554443321 01122222 334445
Q ss_pred CceEEEEecChhhHHHHHHHHH
Q 006567 223 ESRVIVLHVSPSLGFQVFSVAK 244 (640)
Q Consensus 223 ~~~vivl~~~~~~~~~il~~a~ 244 (640)
..++| ++.++..+..+++.+.
T Consensus 193 ~~d~v-~ftS~s~v~~~~~~~~ 213 (269)
T 3re1_A 193 RLNGL-VVSSGQGFEHLLQLAG 213 (269)
T ss_dssp TCCEE-ECSSHHHHTTTHHHHG
T ss_pred CCCEE-EEcCHHHHHHHHHHhh
Confidence 56654 4677787887777654
No 370
>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A
Probab=23.63 E-value=3.5e+02 Score=26.34 Aligned_cols=132 Identities=18% Similarity=0.117 Sum_probs=70.8
Q ss_pred EEEEEEeecCCccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhc--CcEEEEcCCChHHH
Q 006567 32 VNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMET--DIVAIIGPQCSTVA 109 (640)
Q Consensus 32 i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~--~v~aiiGp~~s~~~ 109 (640)
-.|+.+|...+ ...+.+|+.|+.++ +|..+.+...+++-.-.+.+.-..+.++. .+.++=++ ...
T Consensus 72 K~va~lF~e~S---TRTR~SFE~A~~~L-------Gg~vi~l~~~~ss~~kgEsl~DTarvLs~~~D~IviR~~-~~~-- 138 (365)
T 4amu_A 72 KNIAILFQKDS---TRTRCAFEVAASDL-------GAGVTYIGPSGSNMGKKESIEDTAKVLGRFYDGIEFRGF-AQS-- 138 (365)
T ss_dssp CEEEEEESSCC---HHHHHHHHHHHHHH-------TCEEEEECHHHHCCSSSSCHHHHHHHHHHHCSEEEEECS-CHH--
T ss_pred ceEEEEecCCC---chHHHHHHHHHHhC-------CCEEEEcCCccccCCCCcCHHHHHHHHHhhCcEEEEecC-Chh--
Confidence 46888888765 34688999999987 34445443223221111111111222222 23333332 222
Q ss_pred HHHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHH---HhcC---CcEEEEEEEcCCCCcccHHH
Q 006567 110 HIVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMV---SYYG---WNAVSVIFVDNEYGRNGVSA 183 (640)
Q Consensus 110 ~~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll---~~~~---w~~v~ii~~~~~~g~~~~~~ 183 (640)
.+..++...++|+|.-. + +...| .++++|++ +++| ..+|+++. |.. ...+..
T Consensus 139 -~~~~lA~~s~vPVINa~-~-----~~~HP------------tQaLaDl~Ti~E~~G~l~glkva~vG--D~~-nnva~S 196 (365)
T 4amu_A 139 -DVDALVKYSGVPVWNGL-T-----DDEHP------------TQIIADFMTMKEKFGNLKNKKIVFIG--DYK-NNVGVS 196 (365)
T ss_dssp -HHHHHHHHHCSCEEEEE-C-----SSCCH------------HHHHHHHHHHHHHHSSCTTCEEEEES--STT-SHHHHH
T ss_pred -HHHHHHHhCCCCEEeCC-C-----CCCCc------------HHHHHHHHHHHHHhCCCCCCEEEEEC--CCC-cchHHH
Confidence 33445556689999732 2 22233 37888864 2443 46777664 321 236777
Q ss_pred HHHHHhhcCeEEEEe
Q 006567 184 LNDKLAERRCRISYK 198 (640)
Q Consensus 184 ~~~~~~~~g~~v~~~ 198 (640)
+...+...|.++...
T Consensus 197 l~~~~~~lG~~v~~~ 211 (365)
T 4amu_A 197 TMIGAAFNGMHVVMC 211 (365)
T ss_dssp HHHHHHHTTCEEEEE
T ss_pred HHHHHHHcCCEEEEE
Confidence 777788888877654
No 371
>1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A
Probab=23.57 E-value=1.2e+02 Score=28.48 Aligned_cols=70 Identities=13% Similarity=0.145 Sum_probs=46.6
Q ss_pred eeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHhhHHHHHHcCcccEEEeeeeeeccccceEEeCccccccceEEEEec
Q 006567 492 GFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDITIVTNRTKIVDFSQPYAASGLVVVVPF 571 (640)
Q Consensus 492 G~~~dl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~~~~~~~~t~~R~~~vdfs~p~~~~~~~il~~~ 571 (640)
.+...++..+.++.. .+++++.. +....++..|.+|++|+++...... ...+. +.|+....+.+++++
T Consensus 118 ~~l~~~l~~f~~~~P-~v~l~l~~-------~~~~~~~~~l~~g~~Dl~i~~~~~~---~~~l~-~~~l~~~~~~~v~~~ 185 (315)
T 1uth_A 118 YFMPPLMEALAQRAP-HIQISTLR-------PNAGNLKEDMESGAVDLALGLLPEL---QTGFF-QRRLFRHRYVCMFRK 185 (315)
T ss_dssp HHHHHHHHHHHHHCT-TCEEEEEC-------TTSSCHHHHHHHTSCCEEEECCTTC---CTTEE-EEEEEEECEEEEEET
T ss_pred HHHHHHHHHHHHHCC-CcEEEEEe-------CCcccHHHHHHCCCCCEEEecCCCC---CCCce-EEEeeccceEEEEeC
Confidence 345667788888774 33366654 5567899999999999998643221 12222 357777888888876
Q ss_pred CC
Q 006567 572 RK 573 (640)
Q Consensus 572 ~~ 573 (640)
..
T Consensus 186 ~h 187 (315)
T 1uth_A 186 DH 187 (315)
T ss_dssp TC
T ss_pred CC
Confidence 54
No 372
>3rf7_A Iron-containing alcohol dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: NAD EPE; 2.12A {Shewanella denitrificans}
Probab=23.51 E-value=1.9e+02 Score=28.45 Aligned_cols=95 Identities=12% Similarity=-0.010 Sum_probs=56.8
Q ss_pred CcEEEecCCchHHHHHHHHHHHhcCC---cEEEEEEEcCCCCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHH
Q 006567 139 PFFVRTTQSDSYQMTAVAEMVSYYGW---NAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDL 215 (640)
Q Consensus 139 ~~~~r~~p~~~~~~~al~~ll~~~~w---~~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~ 215 (640)
|.-+...+... ..+.++++.++. +++.+|.+..... ..+.+.+++.|+.+..-..+.++ .+...+...
T Consensus 28 p~~i~~G~g~l---~~l~~~l~~~g~~~~~~~liVtd~~~~~----~~l~~~L~~~g~~~~~f~~v~~~--pt~~~v~~~ 98 (375)
T 3rf7_A 28 VPKMIFGRGSF---VQLDTVLEQERTDANDFVVFLVDDVHQH----KPLAARVPNKAHDLVIYVNVDDE--PTTVQVDEL 98 (375)
T ss_dssp CSCEEESTTGG---GGHHHHHHTTCCSTTCCEEEEEEGGGTT----SHHHHHSCCCTTSEEEEECCSSC--CBHHHHHHH
T ss_pred CCeEEEcCCHH---HHHHHHHHHhcccCCCeEEEEECchhhh----hHHHHHHHhcCCeEEEEeCCCCC--CCHHHHHHH
Confidence 33344444433 346677777753 6777777543221 13566676667665433344444 557778888
Q ss_pred HHHHhcCC---ceEEEEec--ChhhHHHHHHH
Q 006567 216 LVKVALME---SRVIVLHV--SPSLGFQVFSV 242 (640)
Q Consensus 216 l~~l~~~~---~~vivl~~--~~~~~~~il~~ 242 (640)
++.+++.+ +|.||-.+ +.-|+..++..
T Consensus 99 ~~~~~~~~~~~~D~IIavGGGS~iD~AK~iA~ 130 (375)
T 3rf7_A 99 TAQVKAFNTKLPVSVVGLGGGSTMDLAKAVSL 130 (375)
T ss_dssp HHHHHHHCSSCCSEEEEEESHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHH
Confidence 88888776 99988774 44455555543
No 373
>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1
Probab=23.14 E-value=2e+02 Score=27.00 Aligned_cols=84 Identities=14% Similarity=0.102 Sum_probs=54.9
Q ss_pred CeEEEEeecCCCccceEEeecCCcceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHhhHHHHHHcCcccEEEeee
Q 006567 465 KLLKIGVPNRASYREFVSKVRGSDMFQGFCIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDI 544 (640)
Q Consensus 465 ~~l~v~~~~~~~~~p~~~~~~~~~~~~G~~~dl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~~~~~~ 544 (640)
++|+|++... -...+...++..+.++.. .+++++.. ++...++..|.+|++|+++...
T Consensus 93 g~l~I~~~~~--------------~~~~~l~~~l~~f~~~~P-~v~i~l~~-------~~~~~~~~~l~~g~~Dlai~~~ 150 (324)
T 1al3_A 93 GSLYVATTHT--------------QARYALPGVIKGFIERYP-RVSLHMHQ-------GSPTQIAEAVSKGNADFAIATE 150 (324)
T ss_dssp EEEEEEECHH--------------HHHHTSHHHHHHHHHHCT-EEEEEEEE-------CCHHHHHHHHHTTCCSEEEESS
T ss_pred CeEEEEechh--------------hhhhHHHHHHHHHHHHCC-CCEEEEEE-------CCHHHHHHHHHCCCceEEEEec
Confidence 5688888521 122456678888888875 44466655 5678999999999999998642
Q ss_pred eeeccccceEEeCccccccceEEEEecCC
Q 006567 545 TIVTNRTKIVDFSQPYAASGLVVVVPFRK 573 (640)
Q Consensus 545 ~~t~~R~~~vdfs~p~~~~~~~il~~~~~ 573 (640)
.. .....+. +.+.....+.+++++..
T Consensus 151 ~~--~~~~~l~-~~~L~~~~~~~v~~~~~ 176 (324)
T 1al3_A 151 AL--HLYDDLV-MLPCYHWNRSIVVTPEH 176 (324)
T ss_dssp CC--CTTSCEE-EEEEEEECEEEEECTTS
T ss_pred CC--CCCCCee-EEEecCCceEEEEcCCC
Confidence 21 1112222 35677778888887654
No 374
>2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=23.04 E-value=4.8e+02 Score=24.58 Aligned_cols=133 Identities=14% Similarity=0.154 Sum_probs=76.4
Q ss_pred EEEEEEeecCCccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcCcEEEEc-CCChHHHH
Q 006567 32 VNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIG-PQCSTVAH 110 (640)
Q Consensus 32 i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aiiG-p~~s~~~~ 110 (640)
-.|+.+|-..+ ...+..|+.|+.++ +|..+.+...+++-.-.+.+.-..+.++.-+++|+- ......
T Consensus 46 k~~~~lF~e~S---TRTR~SFe~A~~~L-------Gg~~i~l~~~~ss~~kgEsl~DTarvls~~~D~iviR~~~~~~-- 113 (301)
T 2ef0_A 46 KVLALLFEKPS---LRTRTTLEVAMVHL-------GGHAVYLDQKQVGIGEREPVRDVAKNLERFVEGIAARVFRHET-- 113 (301)
T ss_dssp CEEEEEESSCC---HHHHHHHHHHHHHT-------TCEEEEEEGGGSCTTTCCCHHHHHHHHTTTCSEEEEECSSHHH--
T ss_pred CEEEEEeccCC---cchHHHHHHHHHHc-------CCeEEEECCcccccCCCCchHHHHHHHHHhCCEEEEecCChHH--
Confidence 46788887654 35688999999885 466666655554322222233333444443444443 222233
Q ss_pred HHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHH---HhcC---CcEEEEEEEcCCCCcccHHHH
Q 006567 111 IVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMV---SYYG---WNAVSVIFVDNEYGRNGVSAL 184 (640)
Q Consensus 111 ~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll---~~~~---w~~v~ii~~~~~~g~~~~~~~ 184 (640)
+..++...++|+|.-. + +..+| .++++|++ +++| -.+++++. |. ...+..+
T Consensus 114 -~~~la~~~~vPVINa~--~----~~~HP------------tQaLaDl~Ti~e~~g~l~gl~ia~vG--D~--~rva~Sl 170 (301)
T 2ef0_A 114 -VEALARHAKVPVVNAL--S----DRAHP------------LQALADLLTLKEVFGGLAGLEVAWVG--DG--NNVLNSL 170 (301)
T ss_dssp -HHHHHHHCSSCEEEEE--C----SSCCH------------HHHHHHHHHHHHHHSCCTTCEEEEES--CC--CHHHHHH
T ss_pred -HHHHHHHCCCCEEeCC--C----CccCc------------hHHHHHHHHHHHHhCCcCCcEEEEEC--CC--chhHHHH
Confidence 3445566689999732 2 12233 38888864 2343 35676654 32 4567777
Q ss_pred HHHHhhcCeEEEEee
Q 006567 185 NDKLAERRCRISYKS 199 (640)
Q Consensus 185 ~~~~~~~g~~v~~~~ 199 (640)
-..+...|.++....
T Consensus 171 ~~~~~~~g~~v~~~~ 185 (301)
T 2ef0_A 171 LEVAPLAGLKVRVAT 185 (301)
T ss_dssp HHHHHHHTCEEEEEC
T ss_pred HHHHHHcCCEEEEEC
Confidence 777878888776543
No 375
>3lvu_A ABC transporter, periplasmic substrate-binding PR; MCSG, PSI-2, periplasmic substrate-binding silicibacter pomeroyi, structural genomics; HET: MSE PG5; 1.79A {Silicibacter pomeroyi}
Probab=22.83 E-value=1.2e+02 Score=27.58 Aligned_cols=42 Identities=19% Similarity=0.175 Sum_probs=32.5
Q ss_pred HHHHHHHHHhCCCCccEEEEEcCCCCCCCCHhhHHHHHHcCcccEEEeeee
Q 006567 495 IDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDIT 545 (640)
Q Consensus 495 ~dl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~~~~~~~ 545 (640)
.++++.-.+++|++++++..+ |......+..|+.||++....
T Consensus 145 a~~iq~~l~~iGi~v~i~~~~---------~~~~~~~~~~~~~d~~~~~w~ 186 (258)
T 3lvu_A 145 LEIYTRALERLGIAAQIEKVD---------NAQYTARVAELDFDLTPFRRD 186 (258)
T ss_dssp HHHHHHHHHTTTCCCEEEEEC---------HHHHHHHHHTTCCSEEEEEEE
T ss_pred HHHHHHHHHHcCCeeEEEecC---------HHHHHHHhccCCccEEEecCC
Confidence 455666667799997777655 888889999999999976544
No 376
>3eye_A PTS system N-acetylgalactosamine-specific IIB component 1; structural genomics, phosphotransferase, PSI-2, protein structure initiative; 1.45A {Escherichia coli O157} SCOP: c.38.1.0
Probab=22.68 E-value=1.2e+02 Score=25.97 Aligned_cols=80 Identities=15% Similarity=0.097 Sum_probs=52.0
Q ss_pred HHHHHHHHHHhcCCcEEEEEEEcCCCCcccHHHHHHHHhhc-CeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEE
Q 006567 151 QMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAER-RCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVL 229 (640)
Q Consensus 151 ~~~al~~ll~~~~w~~v~ii~~~~~~g~~~~~~~~~~~~~~-g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl 229 (640)
.++.+..+.++++.+++.++- |........+.+.+.+.-. |+++... + .++....+.+-+ .+.+++++
T Consensus 19 HGQVat~W~k~~~~~~IiVvn-D~vA~D~~~k~~lkmA~P~~gvk~~i~---s------ve~ai~~~~~~~-~~~~v~il 87 (168)
T 3eye_A 19 HGQVGVTWTSTIGANLLVVVD-DVVANDDIQQKLMGITAETYGFGIRFF---T------IEKTINVIGKAA-PHQKIFLI 87 (168)
T ss_dssp TTHHHHHHHHHHTCSEEEEEC-HHHHHSGGGGHHHHHHHHHHTCEEEEE---C------HHHHHHHGGGCC-TTCCEEEE
T ss_pred chhhhheeccccCCCEEEEEc-ccccCCHHHHHHHHhcCCCCCCeEEEE---E------HHHHHHHHhccc-CCceEEEE
Confidence 468888899999999998764 3333333455555555555 7776532 1 333444444333 56789999
Q ss_pred ecChhhHHHHHH
Q 006567 230 HVSPSLGFQVFS 241 (640)
Q Consensus 230 ~~~~~~~~~il~ 241 (640)
+-++.++..+++
T Consensus 88 ~k~p~d~~~lve 99 (168)
T 3eye_A 88 CRTPQTVRKLVE 99 (168)
T ss_dssp ESSHHHHHHHHH
T ss_pred ECCHHHHHHHHH
Confidence 999999887764
No 377
>1ble_A Fructose permease; phosphotransferase, sugar transport; 2.90A {Bacillus subtilis} SCOP: c.38.1.1
Probab=22.63 E-value=80 Score=26.87 Aligned_cols=80 Identities=10% Similarity=0.021 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhcCCcEEEEEEEcCCCCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEe
Q 006567 151 QMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLH 230 (640)
Q Consensus 151 ~~~al~~ll~~~~w~~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~ 230 (640)
+++....+.++++.+++.++- |........+.+.+.+.-.|+++... + .++....+.+-+..+.++++++
T Consensus 15 HGQV~t~W~~~~~~~~IiVvn-D~vA~D~~~k~~lk~a~P~gvk~~i~---s------ve~ai~~~~~~~~~~~~v~ll~ 84 (163)
T 1ble_A 15 HGQILTRWIKVHAADRIIVVS-DDIAQDEMRKTLILSVAPSNVKASAV---S------VSKMAKAFHSPRYEGVTAMLLF 84 (163)
T ss_dssp CTTHHHHHHHHHTCSEEEEEC-HHHHHCHHHHHHHHTSSCTTSEEEEE---C------HHHHHHHHHCSTTTTCEEEEEE
T ss_pred chhheeeeccccCCCEEEEeC-ccccCCHHHHHHHHhhCCCCCeEEEE---E------HHHHHHHHhcccCCCceEEEEE
Confidence 467788899999999997663 33222223444444444456665532 1 3445555555445678899999
Q ss_pred cChhhHHHHH
Q 006567 231 VSPSLGFQVF 240 (640)
Q Consensus 231 ~~~~~~~~il 240 (640)
-++.++..++
T Consensus 85 k~p~d~~~lv 94 (163)
T 1ble_A 85 ENPSDIVSLI 94 (163)
T ss_dssp SSSHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 9999888775
No 378
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=22.57 E-value=1.1e+02 Score=27.68 Aligned_cols=53 Identities=4% Similarity=0.008 Sum_probs=30.6
Q ss_pred CCcEEEEEEEcCCCCcccHHHHHHHHhhcCe----EEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEec
Q 006567 163 GWNAVSVIFVDNEYGRNGVSALNDKLAERRC----RISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHV 231 (640)
Q Consensus 163 ~w~~v~ii~~~~~~g~~~~~~~~~~~~~~g~----~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~ 231 (640)
.-++|++.. |......+.+.+.+.|+ ++.. ..+....++.+.+...|+++...
T Consensus 136 ~g~~v~v~~-----g~~~~~~l~~~~~~~g~~~~~~~~~-----------~~~~~~~~~~l~~G~vDa~~~~~ 192 (259)
T 4dz1_A 136 NKYSIGYPR-----GMAYSDLIKNDLEPKGYYSLSKVKL-----------YPTYNETMADLKNGNLDLAFIEE 192 (259)
T ss_dssp GGSCEEEET-----TSTHHHHHHHHTGGGTSCCGGGCEE-----------ESSHHHHHHHHHHTSCSEEEEEH
T ss_pred CCCEEEEeC-----CcHHHHHHHHhcccccccccceeEe-----------cCCHHHHHHHHHcCCCCEEEecH
Confidence 346787652 22244556666665553 2211 12345677888888899988874
No 379
>3lfj_A Manxb, phosphotransferase system, mannose/fructose/N- acetylgalactosamine-specific component...; manxb PTS; 1.56A {Thermoanaerobacter tengcongensis}
Probab=22.28 E-value=94 Score=27.08 Aligned_cols=81 Identities=9% Similarity=0.025 Sum_probs=51.4
Q ss_pred HHHHHHHHHHhcCCcEEEEEEEcCCCCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEe
Q 006567 151 QMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLH 230 (640)
Q Consensus 151 ~~~al~~ll~~~~w~~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~ 230 (640)
.++.+..+.++++.+++.++- |........+.+.+.+.-.|+++... + .++....+.+-+..+.++++++
T Consensus 35 HGQVat~W~k~~~~~~IiVvn-D~vA~D~~~k~~lkmA~P~gvk~~i~---s------ve~ai~~~~~~~~~~~~v~il~ 104 (187)
T 3lfj_A 35 HGQVMTRWMKGFPEASIVIID-DELAVDEFMKNIYTMAAPPGVKVKVF---G------VDAALKEWSQKTSVEEKVFLLF 104 (187)
T ss_dssp CTTHHHHHHTTCTTCEEEEEC-HHHHHCHHHHHHHHHTSCTTCCEEEE---C------HHHHHHHHHSBCSSCEEEEEEE
T ss_pred hhhhhheeccccCCCEEEEEC-ccccCCHHHHHHHHHhccCCCeEEEE---E------HHHHHHHHhCCccCCceEEEEE
Confidence 467888899999999997663 33322234445545444456665532 1 3344444444444567899999
Q ss_pred cChhhHHHHHH
Q 006567 231 VSPSLGFQVFS 241 (640)
Q Consensus 231 ~~~~~~~~il~ 241 (640)
-++.++..+++
T Consensus 105 k~p~d~~~lve 115 (187)
T 3lfj_A 105 KNIDTCKRVMD 115 (187)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999887764
No 380
>3tmg_A Glycine betaine, L-proline ABC transporter, glycine/betaine/L-proline-binding protein...; ssgcid, structural genomics; 1.90A {Borrelia burgdorferi}
Probab=22.27 E-value=3.6e+02 Score=24.94 Aligned_cols=82 Identities=17% Similarity=0.212 Sum_probs=50.3
Q ss_pred eHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHhhHHHHHHcCcccEEEeeeeeec-------cccceEEeCccccccceE
Q 006567 494 CIDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDITIVT-------NRTKIVDFSQPYAASGLV 566 (640)
Q Consensus 494 ~~dl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~~~~~~~~t~-------~R~~~vdfs~p~~~~~~~ 566 (640)
...++..+.+.+|+++++ .+ +.-.-+...|.+|++|+.......+. .+.+.+....-+......
T Consensus 31 ~~~i~~~~Le~~G~~Ve~--~~-------~~~~~~~~AL~~G~iD~~~e~w~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 101 (280)
T 3tmg_A 31 ATNVLKVVFEKMGYNAEI--FS-------VTTSIMYQYLASGKIDGTVSSWVPTADKFYYEKLKTKFVDLGANYEGTIQG 101 (280)
T ss_dssp HHHHHHHHHHHTTEEEEE--EE-------CCHHHHHHHHHTTSSSEEEEEEETTTTHHHHHHHGGGEEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHCCCceEE--EE-------CCcHHHHHHHHCCCCcEEEeccCCcccHHHHHHhcCcEEEccccCCCceEE
Confidence 345666666779988554 44 33567889999999999865433221 122333333333344688
Q ss_pred EEEecCCCCcCcceecccc
Q 006567 567 VVVPFRKLNTGAWAFLRPF 585 (640)
Q Consensus 567 il~~~~~~~~~~~~~l~pf 585 (640)
++||+.. .....+.|+..
T Consensus 102 l~V~~~~-~i~sisDL~~~ 119 (280)
T 3tmg_A 102 FVVPSYV-PISSISELKGK 119 (280)
T ss_dssp EEEETTS-CCCBGGGGTTC
T ss_pred EEECCCC-CCCCHHHHHhh
Confidence 9998865 45556666543
No 381
>1r9l_A Glycine betaine-binding periplasmic protein; periplasmic binding protein, cation-PI interactions, tryptophan BOX, protein binding; 1.59A {Escherichia coli} SCOP: c.94.1.1 PDB: 1r9q_A*
Probab=22.23 E-value=1.9e+02 Score=27.43 Aligned_cols=69 Identities=13% Similarity=0.033 Sum_probs=42.8
Q ss_pred HHHHHHHHhCCCCccEEEEEcCCCCCCCCHhhHHHHHHcCcccEEEeeeeee------c--cccceEEeCccccccceEE
Q 006567 496 DVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDITIV------T--NRTKIVDFSQPYAASGLVV 567 (640)
Q Consensus 496 dl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~~~~~~~~t------~--~R~~~vdfs~p~~~~~~~i 567 (640)
.+++.+.+.+|+++++... .+..-++..|.+|++|+.......+ . ++.+.+....-.......+
T Consensus 25 ~i~~~~Le~~Gy~Ve~~~~--------~~~~~~~~Al~~G~iDi~~e~w~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l 96 (309)
T 1r9l_A 25 LLVSRALEKLGYTVNKPSE--------VDYNVGYTSLASGDATFTAVNWTPLHDNMYEAAGGDKKFYREGVFVNGAAQGY 96 (309)
T ss_dssp HHHHHHHHHTTCEECCCEE--------CCHHHHHHHHHHTSSCEEEEEEETTTHHHHHHTTGGGTEEECSCSEEEEEEEE
T ss_pred HHHHHHHHHcCCCeEEeec--------CchHHHHHHHhcCCceEEeccccCccHHHHHHhhcCCcEEEecccCCCceEEE
Confidence 5566666778988665321 3467788899999999986432221 1 1224444443334456789
Q ss_pred EEecC
Q 006567 568 VVPFR 572 (640)
Q Consensus 568 l~~~~ 572 (640)
+||+.
T Consensus 97 ~V~~~ 101 (309)
T 1r9l_A 97 LIDKK 101 (309)
T ss_dssp EEEHH
T ss_pred EEchh
Confidence 99875
No 382
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=22.16 E-value=2.5e+02 Score=24.36 Aligned_cols=66 Identities=18% Similarity=0.087 Sum_probs=43.6
Q ss_pred cCCcEEEEEEEcCC-----CCcccHHHHHHHHhh---cCeEEEEeeccCCCCCCChhHHHHHHHHHhc-CCceEEEEec
Q 006567 162 YGWNAVSVIFVDNE-----YGRNGVSALNDKLAE---RRCRISYKSGIPPESGVNTGYVMDLLVKVAL-MESRVIVLHV 231 (640)
Q Consensus 162 ~~w~~v~ii~~~~~-----~g~~~~~~~~~~~~~---~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~vivl~~ 231 (640)
+.--+++||...|+ .-......+.+.+++ .|..+.....++.+ ...+...+++..+ .++|+||..+
T Consensus 12 ~~~~rv~IistGdEl~~g~~~D~n~~~L~~~L~~~~~~G~~v~~~~iv~Dd----~~~I~~al~~a~~~~~~DlVIttG 86 (189)
T 1jlj_A 12 DHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVPDE----IEEIKETLIDWCDEKELNLILTTG 86 (189)
T ss_dssp -CCCEEEEEEECHHHHTTSSCCHHHHHHHHHHHCTTTTCCEEEEEEEECSC----HHHHHHHHHHHHHTSCCSEEEEES
T ss_pred cCCCEEEEEEECCccCCCcccchHHHHHHHHHhchhcCCcEEEEEEEeCCC----HHHHHHHHHHHhhcCCCCEEEEcC
Confidence 33457888876443 112334567778877 78888776666644 6778888887765 3689998874
No 383
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=22.16 E-value=2.2e+02 Score=24.92 Aligned_cols=63 Identities=11% Similarity=0.155 Sum_probs=39.5
Q ss_pred cEEEEEEEcCCCC-----cccHHHHHHHHhhcCeE--EEEeeccCCCCCCChhHHHHHHHHHhcC-CceEEEEec
Q 006567 165 NAVSVIFVDNEYG-----RNGVSALNDKLAERRCR--ISYKSGIPPESGVNTGYVMDLLVKVALM-ESRVIVLHV 231 (640)
Q Consensus 165 ~~v~ii~~~~~~g-----~~~~~~~~~~~~~~g~~--v~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~vivl~~ 231 (640)
-+++||...|+-. ......+.+.+++.|.. +.....++. +...+...++++.+. ++|+||..+
T Consensus 4 ~rv~IIttGdEl~~G~i~D~n~~~L~~~L~~~G~~~~v~~~~iV~D----d~~~I~~al~~a~~~~~~DlVitTG 74 (195)
T 1di6_A 4 LRIGLVSISDRASSGVYQDKGIPALEEWLTSALTTPFELETRLIPD----EQAIIEQTLCELVDEMSCHLVLTTG 74 (195)
T ss_dssp EEEEEEEEECC-------CCHHHHHHHHHHHHBCSCEEEEEEEEES----CHHHHHHHHHHHHHTSCCSEEEEES
T ss_pred CEEEEEEECCCCCCCeEEchHHHHHHHHHHHcCCCCceEEEEEeCC----CHHHHHHHHHHHHhcCCCCEEEECC
Confidence 3677777554421 22345677788888876 444444443 366777888777664 689888874
No 384
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=22.14 E-value=2.1e+02 Score=23.82 Aligned_cols=85 Identities=14% Similarity=0.124 Sum_probs=43.2
Q ss_pred EEEEEEEcC-CCCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecCh--hhH--HHHH
Q 006567 166 AVSVIFVDN-EYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSP--SLG--FQVF 240 (640)
Q Consensus 166 ~v~ii~~~~-~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~--~~~--~~il 240 (640)
++.|+|... ......++.+.+.+.+.|+.+.... + . ..+....+..+.+ .|.|++.++. ... ..++
T Consensus 2 kv~IvY~S~tGnT~~~A~~ia~~l~~~g~~v~~~~-~--~----~~~~~~~~~~~~~--~d~ii~Gspty~g~~p~~~fl 72 (161)
T 3hly_A 2 SVLIGYLSDYGYSDRLSQAIGRGLVKTGVAVEMVD-L--R----AVDPQELIEAVSS--ARGIVLGTPPSQPSEAVATAL 72 (161)
T ss_dssp CEEEEECTTSTTHHHHHHHHHHHHHHTTCCEEEEE-T--T----TCCHHHHHHHHHH--CSEEEEECCBSSCCHHHHHHH
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHhCCCeEEEEE-C--C----CCCHHHHHHHHHh--CCEEEEEcCCcCCchhHHHHH
Confidence 467788432 2233456677777777787654332 1 1 2233444444433 5667766433 222 3667
Q ss_pred HHHHHcCCccCCeEEEEeC
Q 006567 241 SVAKYLGMMGNGYVWIATD 259 (640)
Q Consensus 241 ~~a~~~gl~~~~~~~i~~~ 259 (640)
.......+.+.....+++.
T Consensus 73 ~~l~~~~l~gk~v~~fgs~ 91 (161)
T 3hly_A 73 STIFAAAHNKQAIGLFDSY 91 (161)
T ss_dssp HHHHHHCCTTSEEEEECCC
T ss_pred HHHHhhhhCCCEEEEEEcC
Confidence 6665544444333344433
No 385
>2b4l_A Glycine betaine-binding protein; substrate-binding protein, closed liganded, ABC-transporter, compatible solutes, transport protein; 2.00A {Bacillus subtilis} PDB: 2b4m_A* 3chg_D
Probab=22.09 E-value=1.4e+02 Score=27.62 Aligned_cols=79 Identities=20% Similarity=0.201 Sum_probs=48.1
Q ss_pred HHHHHHHHhCCCCccEEEEEcCCCCCCCCHhhHHHHHHcCcccEEEeeeee-e------ccccceEEeCccccccceEEE
Q 006567 496 DVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDITI-V------TNRTKIVDFSQPYAASGLVVV 568 (640)
Q Consensus 496 dl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~~~~~~~~-t------~~R~~~vdfs~p~~~~~~~il 568 (640)
.++..+.+.+|+++++.. . ++ .-+...|.+|++|+....... + ..+.+..++..-.....+.++
T Consensus 182 ~v~~~~Le~~Gy~Ve~~~--~------~~-~~~~~al~~G~iD~~~e~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~ 252 (268)
T 2b4l_A 182 NVIGKVLEDLGYEVTLTQ--V------EA-GPMWTAIATGSADASLSAWLPNTHKAYAAKYKGKYDDIGTSMTGVKMGLV 252 (268)
T ss_dssp HHHHHHHHHHTCEEEEEE--C------CT-THHHHHHHHTSSSEEEEEEETTTTHHHHHHTTTSEEEEEEEEEEEEEEEE
T ss_pred HHHHHHHHHcCCceEEEE--C------Ch-HHHHHHHHCCCCeEEehhhcCcCcHHHHHHHcCCeEEccCCCCCCeEEEE
Confidence 345555667899966554 2 33 677888999999998544322 1 122345566555555677888
Q ss_pred EecCCCCcCcceecc
Q 006567 569 VPFRKLNTGAWAFLR 583 (640)
Q Consensus 569 ~~~~~~~~~~~~~l~ 583 (640)
||+.....+..+.|+
T Consensus 253 Vp~~~~~i~si~DL~ 267 (268)
T 2b4l_A 253 VPQYMKNVNSIEDLK 267 (268)
T ss_dssp EETTCTTCCBGGGGT
T ss_pred EehhhcccCCHHHhc
Confidence 886553344444443
No 386
>3qbe_A 3-dehydroquinate synthase; shikimate pathway, mycobacte tuberculosis, nicotinamide adenine dinucleotide (NAD)-depen enzyme; 2.07A {Mycobacterium tuberculosis} PDB: 3qbd_A
Probab=22.03 E-value=1.7e+02 Score=28.60 Aligned_cols=110 Identities=13% Similarity=0.092 Sum_probs=64.8
Q ss_pred CcEEEecCCchHHHHHHHHHHHhcCCcEEEEEEEcCCCCcccHHHHHHHHhhcCeEEEEeeccCCC-CCCChhHHHHHHH
Q 006567 139 PFFVRTTQSDSYQMTAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPE-SGVNTGYVMDLLV 217 (640)
Q Consensus 139 ~~~~r~~p~~~~~~~al~~ll~~~~w~~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~-~~~~~~~~~~~l~ 217 (640)
||-+...+... ..+.++++.. +++.++++..... ..+.+.+.+++.|+.+.... ++.. .+.+...+...++
T Consensus 23 ~~~I~~G~g~l---~~l~~~l~~~--~rvlIVtd~~v~~--~~~~v~~~L~~~g~~~~~~~-~~~gE~~kt~~~v~~~~~ 94 (368)
T 3qbe_A 23 PYPVVIGTGLL---DELEDLLADR--HKVAVVHQPGLAE--TAEEIRKRLAGKGVDAHRIE-IPDAEAGKDLPVVGFIWE 94 (368)
T ss_dssp CEEEEEESCCH---HHHHHHHTTC--SEEEEEECGGGHH--HHHHHHHHHHHTTCEEEEEE-CCSGGGGGBHHHHHHHHH
T ss_pred CceEEEcCCHH---HHHHHHHHcC--CEEEEEECccHHH--HHHHHHHHHHhcCCcceEEE-eCCCCCCCCHHHHHHHHH
Confidence 56566666543 3455666653 8998888655433 36788888888888765332 3322 1123456666666
Q ss_pred HHhcC---CceEEEEec--ChhhHHHHHHHHHHcCCccCCeEEEEeC
Q 006567 218 KVALM---ESRVIVLHV--SPSLGFQVFSVAKYLGMMGNGYVWIATD 259 (640)
Q Consensus 218 ~l~~~---~~~vivl~~--~~~~~~~il~~a~~~gl~~~~~~~i~~~ 259 (640)
.+++. +.+.||-.+ +.-|+..+.......| -.++-|-|.
T Consensus 95 ~l~~~~~~r~d~IIavGGGsv~D~ak~~Aa~~~rg---ip~i~IPTT 138 (368)
T 3qbe_A 95 VLGRIGIGRKDALVSLGGGAATDVAGFAAATWLRG---VSIVHLPTT 138 (368)
T ss_dssp HHHHHTCCTTCEEEEEESHHHHHHHHHHHHHGGGC---CEEEEEECS
T ss_pred HHHHcCCCCCcEEEEECChHHHHHHHHHHHHhccC---CcEEEECCC
Confidence 66653 468777664 4456666665544444 345666554
No 387
>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1
Probab=21.99 E-value=5.2e+02 Score=24.63 Aligned_cols=134 Identities=15% Similarity=0.133 Sum_probs=73.9
Q ss_pred EEEEEEeecCCccchHHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhcCcEEEEc-CCChHHHH
Q 006567 32 VNVGALFTLDSTIGRVAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMETDIVAIIG-PQCSTVAH 110 (640)
Q Consensus 32 i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~~v~aiiG-p~~s~~~~ 110 (640)
-.|+.+|-..+ ...+..|+.|+.++ +|..+.+...+++-.-.+.+.-..+.++.-+++|+- ......
T Consensus 59 k~la~lF~epS---TRTR~SFE~A~~~L-------Gg~~i~l~~~~ss~~kgEsl~DTarvLs~~~D~iviR~~~~~~-- 126 (325)
T 1vlv_A 59 MTLAMIFEKRS---TRTRLAFETAFAEE-------GGHPIFLSPNDIHLGAKESLEDTARVLGRMVDAIMFRGYKQET-- 126 (325)
T ss_dssp CEEEEEESSCC---HHHHHHHHHHHHHT-------TCEEEEECTTTCCTTTSSCHHHHHHHHHTTCSEEEEESSCHHH--
T ss_pred CEEEEEeccCC---cchHHHHHHHHHHc-------CCeEEEECCccccCCCCcCHHHHHHHHHHhCCEEEEECCChHH--
Confidence 46788887654 35689999999985 355555543333321112233333344443444442 222333
Q ss_pred HHHHhhccCCceEEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHH---hcC---CcEEEEEEEcCCCCcccHHHH
Q 006567 111 IVSYVSNELQVPLLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVS---YYG---WNAVSVIFVDNEYGRNGVSAL 184 (640)
Q Consensus 111 ~v~~~~~~~~iP~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~---~~~---w~~v~ii~~~~~~g~~~~~~~ 184 (640)
+..++...++|+|.- .+ +...| .++++|++. ++| -.+|+++. |.. ...+..+
T Consensus 127 -~~~lA~~~~vPVINa--~~----~~~HP------------tQaLaDl~Ti~e~~g~l~gl~va~vG--D~~-~rva~Sl 184 (325)
T 1vlv_A 127 -VEKLAEYSGVPVYNG--LT----DEFHP------------TQALADLMTIEENFGRLKGVKVVFMG--DTR-NNVATSL 184 (325)
T ss_dssp -HHHHHHHHCSCEEES--CC----SSCCH------------HHHHHHHHHHHHHHSCSTTCEEEEES--CTT-SHHHHHH
T ss_pred -HHHHHHhCCCCEEeC--CC----CCCCc------------HHHHHHHHHHHHHhCCcCCcEEEEEC--CCC-cCcHHHH
Confidence 344445557999972 22 12233 388888642 343 34677664 321 3567777
Q ss_pred HHHHhhcCeEEEEee
Q 006567 185 NDKLAERRCRISYKS 199 (640)
Q Consensus 185 ~~~~~~~g~~v~~~~ 199 (640)
-..+...|.++....
T Consensus 185 ~~~~~~~G~~v~~~~ 199 (325)
T 1vlv_A 185 MIACAKMGMNFVACG 199 (325)
T ss_dssp HHHHHHTTCEEEEES
T ss_pred HHHHHHCCCEEEEEC
Confidence 788888888776543
No 388
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1
Probab=21.93 E-value=1.8e+02 Score=26.30 Aligned_cols=60 Identities=18% Similarity=0.151 Sum_probs=40.7
Q ss_pred CCCCccEEEEEcCCCCCCCCHhhHHHHHHcCcccEEEeee--eeeccc--cceEEeCc---cccccceEEEEecCC
Q 006567 505 LPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDI--TIVTNR--TKIVDFSQ---PYAASGLVVVVPFRK 573 (640)
Q Consensus 505 l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~~~~~~--~~t~~R--~~~vdfs~---p~~~~~~~il~~~~~ 573 (640)
-|.+ +++++ .....++.+|.+|++|.++-.+ .+.... .+.+.+.. +...+..+|++++++
T Consensus 133 ~g~~--Ve~ve-------~~y~~~i~~L~~G~IDA~Iwn~d~~~a~~~~~l~~~~l~~~~~~~~~~eavI~v~k~n 199 (231)
T 2ozz_A 133 GDSD--VERVD-------LSYHESLQRIVKGDVDAVIWNVVAENELTMLGLEATPLTDDPRFLQATEAVVLTRVDD 199 (231)
T ss_dssp TTSC--CEEEE-------CCHHHHHHHHHHTSCCEEEEEC-CHHHHHHTTEEEEECCSCHHHHHTTCEEEEEETTC
T ss_pred CCCe--EEEEE-------CCHHHHHHHHHcCCccEEEEcCcchhhhcCCCcceeccccccccccCCceEEEEECCC
Confidence 5656 44554 4599999999999999998733 221111 24566665 555677888888886
No 389
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=21.73 E-value=2.9e+02 Score=25.02 Aligned_cols=116 Identities=13% Similarity=0.009 Sum_probs=61.7
Q ss_pred EEEEEeecC-----Cccch-HHHHHHHHHHHHHhccCCCCCCcEEEEEEccCCCChHHHHHHHHHhHhc--CcEEEEcCC
Q 006567 33 NVGALFTLD-----STIGR-VAKIAIEEAVKDVNSNSSILHGTKLNITMQSSNCSGFIGMVEALRFMET--DIVAIIGPQ 104 (640)
Q Consensus 33 ~IG~l~~~~-----~~~g~-~~~~a~~~Av~~iN~~~~~l~g~~i~~~~~D~~~~~~~a~~~a~~l~~~--~v~aiiGp~ 104 (640)
+|+++.... ..... ....|++.++++.+-.. ... .+ .....+...+.+.+.+++.. .+.||+...
T Consensus 116 ~i~~i~~~~~~~~~~~~~~~~R~~gf~~~l~~~g~~~---~~~---~~-~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~ 188 (276)
T 2h0a_A 116 IFAIAVEEEPDRAFRRTVFAERMAGFQEALKEAGRPF---SPD---RL-YITRHSQEGGRLALRHFLEKASPPLNVFAGA 188 (276)
T ss_dssp EEEEEECCSCCC---CCHHHHHHHHHHHHHHHTTCCC---CGG---GE-EEECSSHHHHHHHHHHHHTTCCSSEEEECSS
T ss_pred eEEEEecCcccccccchhHHHHHHHHHHHHHHcCCCC---ChH---He-eecCCChHHHHHHHHHHHhCCCCCCEEEECC
Confidence 788887654 33445 66788888888743110 111 01 12234566666777777765 589999643
Q ss_pred ChHHHHHHHHhhccCC--ce----EEecccCCCCCCCCCCCcEEEecCCchHHHHHHHHHHH
Q 006567 105 CSTVAHIVSYVSNELQ--VP----LLSFGVTDPTLSSLQYPFFVRTTQSDSYQMTAVAEMVS 160 (640)
Q Consensus 105 ~s~~~~~v~~~~~~~~--iP----~is~~~~~~~l~~~~~~~~~r~~p~~~~~~~al~~ll~ 160 (640)
...+..+...+...+ +| ++++.... .... .. +..+..+...+++..++++.
T Consensus 189 -d~~a~g~~~al~~~g~~vP~di~vvg~d~~~--~~~~-~~-lttv~~~~~~~g~~a~~~l~ 245 (276)
T 2h0a_A 189 -DQVALGVLEEAVRLGLTPGRDVRVLGFDGHP--FAEE-AG-LSTIAQPVEAMGARAAQLLL 245 (276)
T ss_dssp -HHHHHHHHHHHHTTSCTTTTSEEEEEESCCT--HHHH-HT-CEEEECCHHHHHHHHHHHHH
T ss_pred -cHHHHHHHHHHHHcCCCCCCCeEEEEeCCCc--hhhh-cc-eeEecCCHHHHHHHHHHHHH
Confidence 334444444444443 44 56543222 2111 11 34445566667766666543
No 390
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=21.30 E-value=2.2e+02 Score=24.32 Aligned_cols=61 Identities=18% Similarity=0.193 Sum_probs=39.7
Q ss_pred EEEEEEEcCC--CC---cccHHHHHHHHh---hcCeEEEEeeccCCCCCCChhHHHHHHHHHhcC-CceEEEEec
Q 006567 166 AVSVIFVDNE--YG---RNGVSALNDKLA---ERRCRISYKSGIPPESGVNTGYVMDLLVKVALM-ESRVIVLHV 231 (640)
Q Consensus 166 ~v~ii~~~~~--~g---~~~~~~~~~~~~---~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~vivl~~ 231 (640)
+++||...|+ .| ......+.+.++ +.|..+ ....++.+ ...+...+++..+. ++|+||..+
T Consensus 7 rv~IistGdE~~~G~i~Dsn~~~l~~~l~~l~~~G~~v-~~~iv~Dd----~~~I~~~l~~~~~~~~~DlVittG 76 (178)
T 2pbq_A 7 VIGVVTISDRASKGIYEDISGKAIIDYLKDVIITPFEV-EYRVIPDE----RDLIEKTLIELADEKGCSLILTTG 76 (178)
T ss_dssp EEEEEEECHHHHHTSSCCHHHHHHHHHHHHHBCSCCEE-EEEEECSC----HHHHHHHHHHHHHTSCCSEEEEES
T ss_pred EEEEEEeCCcCCCCCeecchHHHHHHHHHHHHhCCCEE-EEEEcCCC----HHHHHHHHHHHHhcCCCCEEEECC
Confidence 6777775443 11 123446677666 789888 55555533 67788888887664 689998874
No 391
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=21.04 E-value=2.5e+02 Score=26.41 Aligned_cols=75 Identities=12% Similarity=0.097 Sum_probs=47.4
Q ss_pred CCcEEEEEEEcCCCCc----ccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecChhhHHH
Q 006567 163 GWNAVSVIFVDNEYGR----NGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVSPSLGFQ 238 (640)
Q Consensus 163 ~w~~v~ii~~~~~~g~----~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~~~~~~~ 238 (640)
..+++.+|+ |...|. ..+..++..+++.|+.+.....-. ..+...+.+++.+ +.|.||..+.......
T Consensus 7 ~m~~~~vi~-Np~sG~~~~~~~~~~i~~~l~~~~~~~~~~~t~~------~~~a~~~~~~~~~-~~d~vv~~GGDGTl~~ 78 (304)
T 3s40_A 7 KFEKVLLIV-NPKAGQGDLHTNLTKIVPPLAAAFPDLHILHTKE------QGDATKYCQEFAS-KVDLIIVFGGDGTVFE 78 (304)
T ss_dssp SCSSEEEEE-CTTCSSSCHHHHHHHHHHHHHHHCSEEEEEECCS------TTHHHHHHHHHTT-TCSEEEEEECHHHHHH
T ss_pred CCCEEEEEE-CcccCCCchHHHHHHHHHHHHHcCCeEEEEEccC------cchHHHHHHHhhc-CCCEEEEEccchHHHH
Confidence 456787777 333333 345677777888888776544322 3355566666643 7888888877777777
Q ss_pred HHHHHHH
Q 006567 239 VFSVAKY 245 (640)
Q Consensus 239 il~~a~~ 245 (640)
++..+..
T Consensus 79 v~~~l~~ 85 (304)
T 3s40_A 79 CTNGLAP 85 (304)
T ss_dssp HHHHHTT
T ss_pred HHHHHhh
Confidence 7776654
No 392
>1ytl_A Acetyl-COA decarboxylase/synthase complex epsilon 2; structural genomics; 1.80A {Archaeoglobus fulgidus} SCOP: c.31.1.6
Probab=20.90 E-value=1.2e+02 Score=26.06 Aligned_cols=35 Identities=11% Similarity=0.243 Sum_probs=26.9
Q ss_pred HHhHhc--CcEEEEcCCCh--HHHHHHHHhhccCCceEEec
Q 006567 90 LRFMET--DIVAIIGPQCS--TVAHIVSYVSNELQVPLLSF 126 (640)
Q Consensus 90 ~~l~~~--~v~aiiGp~~s--~~~~~v~~~~~~~~iP~is~ 126 (640)
.+++.+ +++.++|. .. .....+..+++. ++|+++.
T Consensus 29 a~lI~~AkRPvIl~Gg-v~~~~A~~eL~~~ae~-~iPVvtT 67 (174)
T 1ytl_A 29 ANMIKKAKRPLLIVGP-DMTDEMFERVKKFVEK-DITVVAT 67 (174)
T ss_dssp HHHHHHCSSEEEEECS-CCCHHHHHHHHHHHTS-SSEEEEE
T ss_pred HHHHHcCCCCEEEECC-CCCccHHHHHHHHHHc-CCCEEEc
Confidence 455543 89999998 54 556778899999 9999974
No 393
>3lhk_A Putative DNA binding protein MJ0014; MCSG, PSI-2, structural genomics; 2.20A {Methanocaldococcus jannaschii}
Probab=20.88 E-value=1.4e+02 Score=24.92 Aligned_cols=74 Identities=14% Similarity=0.207 Sum_probs=44.9
Q ss_pred HHHHHHHHHhCCCCccEEEEEcCCCC--CCCCHhhHHHHHHcCcccEEEeeeeeecccc--ceEEeC-ccccccceEEEE
Q 006567 495 IDVFTAAVNLLPYAVPYQFVAFGDGH--KNPSYTQLVDSITTGVFDAVVGDITIVTNRT--KIVDFS-QPYAASGLVVVV 569 (640)
Q Consensus 495 ~dl~~~i~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~D~~~~~~~~t~~R~--~~vdfs-~p~~~~~~~il~ 569 (640)
.+.++..+...|+.+ -.+...+.|. .-+.+..|+..+..|++|.++. ...+|. ...++- .-+...|+.+++
T Consensus 24 ~~~l~~~~~~~g~~v-~~~~D~~SG~~~~Rp~l~~ll~~~~~g~id~vvv---~~ldRL~R~~~~~l~~~l~~~gv~~~~ 99 (154)
T 3lhk_A 24 IQLIKSYAEENGWDI-QILKDIGSGLNEKRKNYKKLLKMVMNRKVEKVII---AYPDRLTRFGFETLKEFFKSYGTEIVI 99 (154)
T ss_dssp HHHHHHHHHHTTCCC-EEEEEESCTTCTTCHHHHHHHHHHHTTCEEEEEE---SSHHHHCSSCHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHCCCEE-EEEEeccCCcCCCCHHHHHHHHHHHcCCCCEEEE---EeCCcccccHHHHHHHHHHHCCCEEEE
Confidence 456777788889886 3444444443 3346999999999999998753 233442 122221 223336777776
Q ss_pred ecC
Q 006567 570 PFR 572 (640)
Q Consensus 570 ~~~ 572 (640)
-..
T Consensus 100 ~~~ 102 (154)
T 3lhk_A 100 INK 102 (154)
T ss_dssp SCS
T ss_pred EeC
Confidence 443
No 394
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=20.75 E-value=3.3e+02 Score=21.86 Aligned_cols=57 Identities=14% Similarity=0.056 Sum_probs=38.8
Q ss_pred cHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecC--hhhHHHHHHHHHHcC
Q 006567 180 GVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVS--PSLGFQVFSVAKYLG 247 (640)
Q Consensus 180 ~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~--~~~~~~il~~a~~~g 247 (640)
....+.+.+++.|..+... .+....+..++...+++|++... ..+...+++..++..
T Consensus 19 ~~~~l~~~L~~~g~~v~~~-----------~~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~ 77 (154)
T 3gt7_A 19 QAEHLKHILEETGYQTEHV-----------RNGREAVRFLSLTRPDLIISDVLMPEMDGYALCRWLKGQP 77 (154)
T ss_dssp HHHHHHHHHHTTTCEEEEE-----------SSHHHHHHHHTTCCCSEEEEESCCSSSCHHHHHHHHHHST
T ss_pred HHHHHHHHHHHCCCEEEEe-----------CCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCC
Confidence 5677888888888765422 12345566777788999999743 445677888887754
No 395
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=20.73 E-value=65 Score=31.69 Aligned_cols=95 Identities=14% Similarity=-0.002 Sum_probs=56.2
Q ss_pred HHHHHHHHhcCCcEEEEEEEcCCCCcccHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEecC
Q 006567 153 TAVAEMVSYYGWNAVSVIFVDNEYGRNGVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLHVS 232 (640)
Q Consensus 153 ~al~~ll~~~~w~~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~~~ 232 (640)
+.+.++++.++.+++.+|++....+ ..+.+.+.++ ..+.+. .+.++ .+.+.....++.+++.++|.||-.+.
T Consensus 26 ~~l~~~l~~~g~~rvliVtd~~~~~--~~~~v~~~L~---~~~~f~-~v~~~--p~~~~v~~~~~~~~~~~~D~IIavGG 97 (364)
T 3iv7_A 26 AFLKQEVERRGSAKVMVIAGEREMS--IAHKVASEIE---VAIWHD-EVVMH--VPIEVAERARAVATDNEIDLLVCVGG 97 (364)
T ss_dssp HHHHHHHHHHTCSSEEEECCGGGHH--HHHHHTTTSC---CSEEEC-CCCTT--CBHHHHHHHHHHHHHTTCCEEEEEES
T ss_pred HHHHHHHHHcCCCEEEEEECCCHHH--HHHHHHHHcC---CCEEEc-ceecC--CCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 4567888889999998887554322 2333333333 112222 22333 45777888888899999999887744
Q ss_pred --hhhHHHHHHHHHHcCCccCCeEEEEeCc
Q 006567 233 --PSLGFQVFSVAKYLGMMGNGYVWIATDW 260 (640)
Q Consensus 233 --~~~~~~il~~a~~~gl~~~~~~~i~~~~ 260 (640)
.-|+..++... .+ ..++-|-|..
T Consensus 98 Gs~iD~aK~iA~~--~~---~P~i~IPTTa 122 (364)
T 3iv7_A 98 GSTIGLAKAIAMT--TA---LPIVAIPTTY 122 (364)
T ss_dssp HHHHHHHHHHHHH--HC---CCEEEEECSS
T ss_pred cHHHHHHHHHHhc--cC---CCEEEEcCCc
Confidence 34455554332 23 3456666654
No 396
>2hxw_A Major antigenic peptide PEB3; periplasmic binding protein, N-glycosylation, structural genomics; HET: FLC; 1.60A {Campylobacter jejuni} PDB: 3fjm_A 3fjg_A 3fir_A* 3fj7_A*
Probab=20.59 E-value=61 Score=29.09 Aligned_cols=69 Identities=9% Similarity=0.034 Sum_probs=44.1
Q ss_pred HHHHHHHHHhCCCCccEEEEEcCCCCCCCCHhhHHHHHHcCcccEEEeeeeeecc--ccc---eEEe--CccccccceEE
Q 006567 495 IDVFTAAVNLLPYAVPYQFVAFGDGHKNPSYTQLVDSITTGVFDAVVGDITIVTN--RTK---IVDF--SQPYAASGLVV 567 (640)
Q Consensus 495 ~dl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~~~~~~~~t~~--R~~---~vdf--s~p~~~~~~~i 567 (640)
-++++.+.++.|+++++.+ ++...++..+. +.+|+++++-....+ ..+ .++. ..++....+++
T Consensus 16 ~~~~~~F~~~~gi~V~~~~---------~~s~~l~~~l~-~~~Dv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l 85 (237)
T 2hxw_A 16 KDIANKYSEKTGVKVNVNF---------GPQATWFEKAK-KDADILFGASDQSALAIASDFGKDFNVSKIKPLYFREAII 85 (237)
T ss_dssp HHHHHHHHHHHCCCEEEEE---------SSHHHHHHHHH-HHCSEEEESSHHHHHHHHTTSGGGCCGGGCEEEEEEEEEE
T ss_pred HHHHHHHHHHhCceEEEEe---------CChHHHHHHhc-cCCCEEEeCCHHHHHHHHHhcccccCcccccccccCceEE
Confidence 4677888788898855533 55778888888 899999876521111 111 2332 24566678888
Q ss_pred EEecCC
Q 006567 568 VVPFRK 573 (640)
Q Consensus 568 l~~~~~ 573 (640)
++++.+
T Consensus 86 ~~~~~~ 91 (237)
T 2hxw_A 86 LTQKGN 91 (237)
T ss_dssp EESTTC
T ss_pred EEeCCC
Confidence 887654
No 397
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=20.55 E-value=2.7e+02 Score=22.44 Aligned_cols=57 Identities=7% Similarity=-0.005 Sum_probs=32.6
Q ss_pred cHHHHHHHHhhcCeEEEEeeccCCCCCCChhHHHHHHHHHhcCCceEEEEe--cChhhHHHHHHHHHHc
Q 006567 180 GVSALNDKLAERRCRISYKSGIPPESGVNTGYVMDLLVKVALMESRVIVLH--VSPSLGFQVFSVAKYL 246 (640)
Q Consensus 180 ~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~vivl~--~~~~~~~~il~~a~~~ 246 (640)
....++..+++.|..++... .+-...+..+++..+|+|++. .+.-+...++++.++.
T Consensus 24 ~r~~l~~~L~~~G~~~v~~a----------~~g~~al~~~~~~~~DlillD~~MP~mdG~el~~~ir~~ 82 (134)
T 3to5_A 24 MRRIVKNLLRDLGFNNTQEA----------DDGLTALPMLKKGDFDFVVTDWNMPGMQGIDLLKNIRAD 82 (134)
T ss_dssp HHHHHHHHHHHTTCCCEEEE----------SSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCcEEEEE----------CCHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHhC
Confidence 45566677777776432211 112334455555678888886 4445566777777654
Done!