BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006569
(640 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CXK|A Chain A, Crystal Structure Of The Tig Domain Of Human Calmodulin-
Binding Transcription Activator 1 (Camta1)
pdb|2CXK|B Chain B, Crystal Structure Of The Tig Domain Of Human Calmodulin-
Binding Transcription Activator 1 (Camta1)
pdb|2CXK|C Chain C, Crystal Structure Of The Tig Domain Of Human Calmodulin-
Binding Transcription Activator 1 (Camta1)
pdb|2CXK|D Chain D, Crystal Structure Of The Tig Domain Of Human Calmodulin-
Binding Transcription Activator 1 (Camta1)
pdb|2CXK|E Chain E, Crystal Structure Of The Tig Domain Of Human Calmodulin-
Binding Transcription Activator 1 (Camta1)
Length = 95
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 51/88 (57%), Gaps = 6/88 (6%)
Query: 367 ITDVSPAWAFSNEKTKILVTGFFHKDCLHLSKSNMFCVCGEVRVPAEFVQAGVYRCFLPP 426
+TD SP W++ K+L+TG + + + +N C+ ++ VPA +Q GV RC+ P
Sbjct: 9 VTDYSPEWSYPEGGVKVLITGPWQE-----ASNNYSCLFDQISVPASLIQPGVLRCYCPA 63
Query: 427 HSPGLFLLYMSLDGHKPISQVLNFEYRS 454
H GL L ++ + ++ IS + FEY+S
Sbjct: 64 HDTGLVTLQVAFN-NQIISNSVVFEYKS 90
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%)
Query: 570 GQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGRYES 618
G +H+ A GYT + L + ++ +D GWT LH AA++G+ E+
Sbjct: 199 GGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEA 247
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 36.6 bits (83), Expect = 0.045, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 29/61 (47%)
Query: 557 VVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGRY 616
+ G+ +D G +HL A +G+ + + G ++ RD GWT LH AA G
Sbjct: 34 MANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADNGHL 93
Query: 617 E 617
E
Sbjct: 94 E 94
Score = 29.3 bits (64), Expect = 7.8, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 26/58 (44%)
Query: 560 GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGRYE 617
G+ D G +HL A G+ + + G ++ +D YG T LH AA G E
Sbjct: 70 GADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLE 127
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 36.2 bits (82), Expect = 0.059, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 29/61 (47%)
Query: 557 VVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGRY 616
+ G+ D G +HL A G+ + + G +D D +G+T LH AAY+G
Sbjct: 34 MANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGHL 93
Query: 617 E 617
E
Sbjct: 94 E 94
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 27/58 (46%)
Query: 560 GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGRYE 617
G+ DV G +HL A G+ + + +G ++ D G T LH AA +G E
Sbjct: 70 GADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLE 127
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 25/53 (47%)
Query: 560 GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAY 612
G+ + D G IHL A G+T + G +D D+ G T L WAAY
Sbjct: 99 GADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAY 151
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 574 IHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGRYESSSY 621
IH+ A G T + +G+S ++++G TALH A +G +++ Y
Sbjct: 24 IHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKY 71
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 34.7 bits (78), Expect = 0.19, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 29/58 (50%)
Query: 560 GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGRYE 617
G+ D +G +HL A LG+ + + G ++ +D G T L+ AAY+G E
Sbjct: 58 GADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLE 115
Score = 32.7 bits (73), Expect = 0.71, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 30/61 (49%)
Query: 557 VVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGRY 616
+ G+ YD +G+ +H+ A +G+ + + +G ++ D G T LH AA G
Sbjct: 22 MANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHL 81
Query: 617 E 617
E
Sbjct: 82 E 82
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 543 LTLKSKLKEWLLERVV-EGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDK 601
L KL E L ER++ + S T D + +H G+T + G+ ++ +D
Sbjct: 13 LAYSGKLDE-LKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDD 71
Query: 602 YGWTALHWAAYYGRYE 617
GW+ LH AA GR E
Sbjct: 72 AGWSPLHIAASAGRDE 87
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 26/59 (44%)
Query: 559 EGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGRYE 617
+G+ D G+ +HL A G+ + L G + +D G T LH AA G E
Sbjct: 59 QGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKE 117
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 30/68 (44%)
Query: 550 KEWLLERVVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHW 609
K+ + + + G+ D G+ +HL A G+ + L G + +D G T LH
Sbjct: 17 KDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHL 76
Query: 610 AAYYGRYE 617
AA G E
Sbjct: 77 AAENGHKE 84
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 33.5 bits (75), Expect = 0.34, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 28/61 (45%)
Query: 557 VVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGRY 616
+ G+ D G +HL A+ G+ + + G +D D YG+T LH AA G
Sbjct: 34 IANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGHL 93
Query: 617 E 617
E
Sbjct: 94 E 94
Score = 30.0 bits (66), Expect = 4.5, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 27/58 (46%)
Query: 560 GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGRYE 617
G+ DV+G +HL AM G+ + + G ++ D G T LH AA G E
Sbjct: 70 GADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLE 127
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 33/75 (44%)
Query: 543 LTLKSKLKEWLLERVVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKY 602
L KL+E + + S T D + +H G+T + G+ ++ +D
Sbjct: 14 LAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA 73
Query: 603 GWTALHWAAYYGRYE 617
GW+ LH AA GR E
Sbjct: 74 GWSPLHIAASAGRDE 88
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 33/75 (44%)
Query: 543 LTLKSKLKEWLLERVVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKY 602
L KL+E + + S T D + +H G+T + G+ ++ +D
Sbjct: 13 LAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA 72
Query: 603 GWTALHWAAYYGRYE 617
GW+ LH AA GR E
Sbjct: 73 GWSPLHIAASAGRDE 87
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 33.1 bits (74), Expect = 0.43, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 29/61 (47%)
Query: 557 VVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGRY 616
+ G+ D G+ +HL A+ G+ + + G ++ DK G T LH AA YG
Sbjct: 34 MANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGHL 93
Query: 617 E 617
E
Sbjct: 94 E 94
Score = 33.1 bits (74), Expect = 0.44, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 28/58 (48%)
Query: 560 GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGRYE 617
G+ D G +HL A+ G+ + + +G ++ D YG+T LH AA G E
Sbjct: 70 GADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLE 127
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 33.1 bits (74), Expect = 0.48, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 29/58 (50%)
Query: 560 GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGRYE 617
G+ D +G+ +HL A G+ + L +G ++ +DK G T LH AA G E
Sbjct: 25 GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLE 82
Score = 33.1 bits (74), Expect = 0.48, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 29/58 (50%)
Query: 560 GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGRYE 617
G+ D +G+ +HL A G+ + L +G ++ +DK G T LH AA G E
Sbjct: 58 GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLE 115
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 569 HGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGRYE 617
+G+ +HL A G+ + L +G ++ +DK G T LH AA G E
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLE 49
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 33.1 bits (74), Expect = 0.48, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 29/58 (50%)
Query: 560 GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGRYE 617
G+ D +G+ +HL A G+ + L +G ++ +DK G T LH AA G E
Sbjct: 25 GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLE 82
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 569 HGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGRYE 617
+G+ +HL A G+ + L +G ++ +DK G T LH AA G E
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLE 49
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 9/87 (10%)
Query: 528 DKRTSLPEAKDSFFELTLKSKLKEWLLERVVEGSKTTEYDVHGQGVIHLCAMLG-YTWAI 586
D+RT L EA ++ +K +K G+ D G +HL A G Y
Sbjct: 43 DQRTPLMEAAENNHLEAVKYLIKA--------GALVDPKDAEGSTCLHLAAKKGHYEVVQ 94
Query: 587 LLFSWSGLSLDFRDKYGWTALHWAAYY 613
L S + ++ +D GWT + WA Y
Sbjct: 95 YLLSNGQMDVNCQDDGGWTPMIWATEY 121
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 32.7 bits (73), Expect = 0.56, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 27/58 (46%)
Query: 560 GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGRYE 617
G+ YD G +HL A G+ + + +G ++ +D G T LH AA G E
Sbjct: 70 GADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLE 127
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 29/61 (47%)
Query: 557 VVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGRY 616
+ G+ DV G +HL A G+ + + +G ++ D G T LH AA++G
Sbjct: 34 MANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHL 93
Query: 617 E 617
E
Sbjct: 94 E 94
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 32.7 bits (73), Expect = 0.69, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 28/58 (48%)
Query: 560 GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGRYE 617
G+ D+ G +HL A++G+ + + G ++ D +G T LH AA G E
Sbjct: 70 GADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLE 127
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 32.3 bits (72), Expect = 0.75, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 28/58 (48%)
Query: 560 GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGRYE 617
G+ D+ G +HL A++G+ + + G ++ D +G T LH AA G E
Sbjct: 70 GADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLE 127
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 32.3 bits (72), Expect = 0.79, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 29/58 (50%)
Query: 560 GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGRYE 617
G+ +D +G +HL A G+ + + G ++ +D G+T LH AAY G E
Sbjct: 70 GADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLE 127
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 32.3 bits (72), Expect = 0.80, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 27/58 (46%)
Query: 560 GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGRYE 617
G+ D G +HL A G+ + + G ++ D+ GWT LH AA G+ E
Sbjct: 62 GADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLE 119
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 551 EWLLERVVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWA 610
E+LL+ G+ + D G+G +H +LG+T LF G L RD G L A
Sbjct: 252 EFLLQ---NGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIA 308
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 32.0 bits (71), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 551 EWLLERVVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWA 610
E+LL+ G+ + D G+G +H +LG+T LF G L RD G L A
Sbjct: 252 EFLLQ---NGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIA 308
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 32.0 bits (71), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 551 EWLLERVVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWA 610
E+LL+ G+ + D G+G +H +LG+T LF G L RD G L A
Sbjct: 252 EFLLQ---NGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIA 308
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 26/61 (42%)
Query: 557 VVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGRY 616
+ G+ D G +HL G+ I + ++ DK GWT LH AAY G
Sbjct: 34 MANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHL 93
Query: 617 E 617
E
Sbjct: 94 E 94
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 29/61 (47%)
Query: 557 VVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGRY 616
+ G+ D G +HL A G+ + + +G ++ +DK G+T LH AA G
Sbjct: 22 MANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHL 81
Query: 617 E 617
E
Sbjct: 82 E 82
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Query: 537 KDSFFELTLKSKLKEWLLERVVE-----GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSW 591
KD + L L ++ E LE +VE G+ D G +HL A G+ + +
Sbjct: 33 KDGYTPLHLAAR--EGHLE-IVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 89
Query: 592 SGLSLDFRDKYGWTALHWAAYYGRYE 617
+G ++ +DK G+T LH AA G E
Sbjct: 90 AGADVNAKDKDGYTPLHLAAREGHLE 115
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 29/61 (47%)
Query: 557 VVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGRY 616
+ G+ D G +HL A G+ + + +G ++ +DK G+T LH AA G
Sbjct: 22 MANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHL 81
Query: 617 E 617
E
Sbjct: 82 E 82
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Query: 537 KDSFFELTLKSKLKEWLLERVVE-----GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSW 591
KD + L L ++ E LE +VE G+ D G +HL A G+ + +
Sbjct: 33 KDGYTPLHLAAR--EGHLE-IVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 89
Query: 592 SGLSLDFRDKYGWTALHWAAYYGRYE 617
+G ++ +DK G+T LH AA G E
Sbjct: 90 AGADVNAKDKDGYTPLHLAAREGHLE 115
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 29/61 (47%)
Query: 557 VVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGRY 616
+ G+ D G +HL A G+ + + +G ++ +DK G+T LH AA G
Sbjct: 34 MANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHL 93
Query: 617 E 617
E
Sbjct: 94 E 94
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Query: 537 KDSFFELTLKSKLKEWLLERVVE-----GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSW 591
KD + L L ++ E LE +VE G+ D G +HL A G+ + +
Sbjct: 45 KDGYTPLHLAAR--EGHLE-IVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 101
Query: 592 SGLSLDFRDKYGWTALHWAAYYGRYE 617
+G ++ +DK G+T LH AA G E
Sbjct: 102 AGADVNAKDKDGYTPLHLAAREGHLE 127
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 27/61 (44%)
Query: 557 VVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGRY 616
+ G+ D G +HL A LG+ + + G ++ D +G T LH AA G
Sbjct: 34 MANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHL 93
Query: 617 E 617
E
Sbjct: 94 E 94
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 543 LTLKSKLKEWLLERVV-EGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDK 601
L KL E L ER++ + S T D + +H G+T + G+ ++ +D
Sbjct: 13 LAYSGKLDE-LKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDD 71
Query: 602 YGWTALHWAAYYGRYE 617
GW+ LH AA G E
Sbjct: 72 AGWSPLHIAASAGXDE 87
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 592 SGLSLDFRDKYGWTALHWAAYYGRYE 617
+G ++ D GWT LH AAY+G E
Sbjct: 36 NGADVNASDHVGWTPLHLAAYFGHLE 61
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 30.0 bits (66), Expect = 3.8, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 560 GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTAL 607
G+ D+ G +HL AM G+ + + +G ++ +DK+G TA
Sbjct: 103 GADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAF 150
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 30.0 bits (66), Expect = 4.6, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 26/58 (44%)
Query: 560 GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGRYE 617
G+ D+ G +HL A G+ + + G ++ D G T LH AA YG E
Sbjct: 70 GADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLE 127
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 29.6 bits (65), Expect = 5.9, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 27/61 (44%)
Query: 557 VVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGRY 616
+ G+ D G +HL A G+ + + +G ++ +D G T LH AA G
Sbjct: 34 MANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHL 93
Query: 617 E 617
E
Sbjct: 94 E 94
Score = 28.9 bits (63), Expect = 8.6, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 560 GSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGRYE 617
G+ D G +HL A G+ + + +G ++ D +G+T LH AA G E
Sbjct: 70 GADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLE 127
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 29.3 bits (64), Expect = 6.3, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 27/61 (44%)
Query: 557 VVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGRY 616
+ G+ D G +HL A G+ + + G ++ RD +G T LH AA G
Sbjct: 34 MANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHL 93
Query: 617 E 617
E
Sbjct: 94 E 94
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 28.9 bits (63), Expect = 8.3, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 28/61 (45%)
Query: 557 VVEGSKTTEYDVHGQGVIHLCAMLGYTWAILLFSWSGLSLDFRDKYGWTALHWAAYYGRY 616
+ G+ D +G +HL A +G+ + + +G ++ D G T LH AA G
Sbjct: 34 MANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGHL 93
Query: 617 E 617
E
Sbjct: 94 E 94
>pdb|1WFI|A Chain A, Nuclear Move Domain Of Nuclear Distribution Gene C Homolog
Length = 131
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 201 LHELNTLEWDDLVVTNDSNDSTE---PRGDKFSHFDQQNHTAIKGAAS 245
L ++N +EW + +VT+D +T+ P K S D + + + G +S
Sbjct: 83 LEKINKMEWWNRLVTSDPEINTKKINPENSKLSDLDSETRSMVSGPSS 130
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,493,548
Number of Sequences: 62578
Number of extensions: 888572
Number of successful extensions: 2136
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2025
Number of HSP's gapped (non-prelim): 101
length of query: 640
length of database: 14,973,337
effective HSP length: 105
effective length of query: 535
effective length of database: 8,402,647
effective search space: 4495416145
effective search space used: 4495416145
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)