BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006571
(640 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 98.6 bits (244), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 67/210 (31%), Positives = 109/210 (51%), Gaps = 15/210 (7%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN-------DHPYSK 225
L + ++ GE +++MGPSGSGK+T+LN++ G L +PT G N D +K
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNII-GCLDKPTEGEVYIDNIKTNDLDDDELTK 79
Query: 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 285
+ KIGFV Q L P LT E + + + ++ +++ KRA++ + LE
Sbjct: 80 IRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEE--- 136
Query: 286 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA- 344
+SGG+++RV I + NP ++ D+PT LDS T +I+Q+L+ + E
Sbjct: 137 -RFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEED 195
Query: 345 GKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374
GKTVV H + F +++I L G +
Sbjct: 196 GKTVVVVTHDINVARFG--ERIIYLKDGEV 223
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/210 (31%), Positives = 109/210 (51%), Gaps = 15/210 (7%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN-------DHPYSK 225
L + ++ GE +++MGPSGSGK+T+LN++ G L +PT G N D +K
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNII-GCLDKPTEGEVYIDNIKTNDLDDDELTK 79
Query: 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 285
+ KIGFV Q L P LT E + + + ++ +++ KRA++ + LE
Sbjct: 80 IRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEE--- 136
Query: 286 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA- 344
+SGG+++RV I + NP ++ D+PT LDS T +I+Q+L+ + E
Sbjct: 137 -RFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEED 195
Query: 345 GKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374
GKTVV H + F +++I L G +
Sbjct: 196 GKTVVVVTHDINVARFG--ERIIYLKDGEV 223
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/210 (31%), Positives = 105/210 (50%), Gaps = 15/210 (7%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN-------DHPYSK 225
L + ++ GE +++ GPSGSGK+T LN++ G L +PT G N D +K
Sbjct: 21 LKNVNLNIKEGEFVSIXGPSGSGKSTXLNII-GCLDKPTEGEVYIDNIKTNDLDDDELTK 79
Query: 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 285
+ KIGFV Q L P LT E + + + + +++ KRA++ + LE
Sbjct: 80 IRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEERRKRALECLKXAELEE--- 136
Query: 286 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA- 344
+SGG+++RV I + NP ++ DEPT LDS T +I Q+L+ + E
Sbjct: 137 -RFANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEED 195
Query: 345 GKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374
GKTVV H + F +++I L G +
Sbjct: 196 GKTVVVVTHDINVARFG--ERIIYLKDGEV 223
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 81/282 (28%), Positives = 143/282 (50%), Gaps = 36/282 (12%)
Query: 125 DIPEDIEAGTRERPKFQTEPTLPI-------------YLKFTDVTYKVILKGMTSSEEKD 171
++ + + AG R + EP LP L+F +V + + E
Sbjct: 335 ELMKGLGAGGRLWELLEREPKLPFNEGVILNEKSFQGALEFKNVHF-----AYPARPEVP 389
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS----L 227
I + S+ G V AL+GPSGSGK+T+L+LL RL +P G+I+ + H + L
Sbjct: 390 IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLL-RLYDPA-SGTISLDGHDIRQLNPVWL 447
Query: 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER----C 283
+SKIG V+Q+ +LF ++ E + Y A P+++T ++ + R +V N + R
Sbjct: 448 RSKIGTVSQEPILF-SCSIAENIAYGA--DDPSSVTAEEIQ-RVAEVANAVAFIRNFPQG 503
Query: 284 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 343
+T++G V +SGG+++R+ I ++ NP +L LDE TS LD+ + + L + +
Sbjct: 504 FNTVVGEKGVL-LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD 562
Query: 344 AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
G+TV+ H S+ + + +L +G + +GK E ++
Sbjct: 563 -GRTVLVIAHHLST--IKNANMVAVLDQGKITEYGKHEELLS 601
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 92.0 bits (227), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 81/282 (28%), Positives = 144/282 (51%), Gaps = 36/282 (12%)
Query: 125 DIPEDIEAGTRERPKFQTEPTLPI-------------YLKFTDVTYKVILKGMTSSEEKD 171
++ + + AG R + EP LP L+F +V + + E
Sbjct: 304 ELMKGLGAGGRLWELLEREPKLPFNEGVILNEKSFQGALEFKNVHF-----AYPARPEVP 358
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS----L 227
I + S+ G V AL+GPSGSGK+T+L+LL RL +P G+I+ + H + L
Sbjct: 359 IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLL-RLYDPA-SGTISLDGHDIRQLNPVWL 416
Query: 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER----C 283
+SKIG V+Q+ +LF ++ E + Y A P+++T ++ + R +V N + R
Sbjct: 417 RSKIGTVSQEPILF-SCSIAENIAYGA--DDPSSVTAEEIQ-RVAEVANAVAFIRNFPQG 472
Query: 284 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 343
+T++G V +SGG+++R+ I ++ NP +L LDE TS LD+ + + L + +
Sbjct: 473 FNTVVGEKGVL-LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD 531
Query: 344 AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
G+TV+ H+ S+ + + +L +G + +GK E ++
Sbjct: 532 -GRTVLVIAHRLST--IKNANMVAVLDQGKITEYGKHEELLS 570
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 120/243 (49%), Gaps = 22/243 (9%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG----GSITYNDHPYSKSLK 228
++G++ V GE +AL+GPSG GKTT L +L+G + +PT G + ND P
Sbjct: 19 VDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAG-IYKPTSGEIYFDDVLVNDIPPK---Y 74
Query: 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMI 288
++G V Q+ L+PH+TV E + + R ++K + EKR +++ +L ++ D
Sbjct: 75 REVGMVFQNYALYPHMTVFENIAFPLRAR---RISKDEVEKRVVEIARKLLIDNLLDRK- 130
Query: 289 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRI---VQMLQDIAEAG 345
+SGG+++RV + ++ P +L DEP S LD+ + + ++ LQ E G
Sbjct: 131 ----PTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQ--ELG 184
Query: 346 KTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLL 405
T V H + + ++ + +G L+ +G E ++ + I P FL
Sbjct: 185 ITSVYVTHDQAEAMTMA-SRIAVFNQGKLVQYGTPDEVYDSPKNMFVASFIGNPPTNFLR 243
Query: 406 DLA 408
D +
Sbjct: 244 DFS 246
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 128/227 (56%), Gaps = 23/227 (10%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL- 227
E +IL G++ SV PG+ LAL+GPSG GK+T++ LL R + T+GG I + D K+L
Sbjct: 1091 EIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLE-RFYD-TLGGEI-FIDGSEIKTLN 1147
Query: 228 ----KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK--RAIDVINELG-L 280
+S+I V+Q+ LF ++ E + Y P+++T Q E+ R ++ N + L
Sbjct: 1148 PEHTRSQIAIVSQEPTLF-DCSIAENIIYGL---DPSSVTMAQVEEAARLANIHNFIAEL 1203
Query: 281 ERCQDTMIGGSFVRG--VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 338
+T +G RG +SGG+++R+ I ++ NP +L LDE TS LD T + ++VQ
Sbjct: 1204 PEGFETRVGD---RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALD-TESEKVVQEA 1259
Query: 339 QDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
D A G+T + H+ ++ + D + ++ G+++ G ++ M+
Sbjct: 1260 LDRAREGRTCIVIAHRLNTVM--NADCIAVVSNGTIIEKGTHTQLMS 1304
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 107/220 (48%), Gaps = 17/220 (7%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSL 227
IL G+ VN G+ +AL+G SG GK+T+++LL R + + G IT + + L
Sbjct: 433 ILRGMNLRVNAGQTVALVGSSGCGKSTIISLLL-RYYD-VLKGKITIDGVDVRDINLEFL 490
Query: 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTM 287
+ + V+Q+ LF + T++E ++ + K A I L +T+
Sbjct: 491 RKNVAVVSQEPALF-NCTIEENISLGKEGITREEMVAACKMANAEKFIKTL--PNGYNTL 547
Query: 288 IGGSFVRG--VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 345
+G RG +SGG+++R+ I ++ NP +L LDE TS LD+ + IVQ D A G
Sbjct: 548 VGD---RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESE-GIVQQALDKAAKG 603
Query: 346 KTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
+T + H+ S+ D +I G ++ G MA
Sbjct: 604 RTTIIIAHRLST--IRNADLIISCKNGQVVEVGDHRALMA 641
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 128/245 (52%), Gaps = 27/245 (11%)
Query: 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME 209
+KF DV++ + +L G+T ++ PG+V AL+GP+GSGK+T+ LL L +
Sbjct: 17 VKFQDVSF-----AYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQ-NLYQ 70
Query: 210 PTVGGSITYN-------DHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNT- 261
PT GG + + DH Y L +++ V Q+ +LF + +E + Y L R P
Sbjct: 71 PT-GGKVLLDGEPLVQYDHHY---LHTQVAAVGQEPLLFGR-SFRENIAYG-LTRTPTME 124
Query: 262 -LTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLD 320
+T E A D I+ G + DT +G + + +SGG+R+ V + +I P LL LD
Sbjct: 125 EITAVAMESGAHDFIS--GFPQGYDTEVGETGNQ-LSGGQRQAVALARALIRKPRLLILD 181
Query: 321 EPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379
+ TS LD+ LR+ ++L + E A +TV+ HQ S L + ++ L +GS+ G
Sbjct: 182 QATSALDAGNQLRVQRLLYESPEWASRTVLLITHQLS--LAERAHHILFLKEGSVCEQGT 239
Query: 380 ASEAM 384
+ M
Sbjct: 240 HLQLM 244
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 101/194 (52%), Gaps = 22/194 (11%)
Query: 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGG------SITY-NDHPY 223
+IL GI+ SV GE ++++G SGSGK+TLL +L G L PT G + Y N+
Sbjct: 18 EILKGISLSVKKGEFVSIIGASGSGKSTLLYIL-GLLDAPTEGKVFLEGKEVDYTNEKEL 76
Query: 224 SKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC 283
S K+GFV Q L P LT E + +L++ K++ ++R +++ELGL
Sbjct: 77 SLLRNRKLGFVFQFHYLIPELTALENVI-VPMLKMGKP--KKEAKERGEYLLSELGL--- 130
Query: 284 QDTMIGGSFVRG---VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 340
G R +SGGE++RV I + P LLF DEPT LDS R++ +
Sbjct: 131 -----GDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLK 185
Query: 341 IAEAGKTVVTTIHQ 354
I E G ++V H+
Sbjct: 186 INEGGTSIVMVTHE 199
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 104/194 (53%), Gaps = 23/194 (11%)
Query: 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN-------DHPY 223
++L GI + GEV+ ++GPSGSGK+T L L+ L+E G I + D
Sbjct: 17 EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLN--LLEDFDEGEIIIDGINLKAKDTNL 74
Query: 224 SKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK---RAIDVINELGL 280
+K ++ ++G V Q LFPH+TV +T A P + K +EK +A+++++++GL
Sbjct: 75 NK-VREEVGMVFQRFNLFPHMTVLNNITLA-----PMKVRKWPREKAEAKAMELLDKVGL 128
Query: 281 ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 340
+ ++ +SGG+ +RV I + + P ++ DEPTS LD ++ +++
Sbjct: 129 KDK-----AHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQ 183
Query: 341 IAEAGKTVVTTIHQ 354
+A G T+V H+
Sbjct: 184 LANEGMTMVVVTHE 197
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 89.4 bits (220), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 104/194 (53%), Gaps = 23/194 (11%)
Query: 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN-------DHPY 223
++L GI + GEV+ ++GPSGSGK+T L L+ L+E G I + D
Sbjct: 38 EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLN--LLEDFDEGEIIIDGINLKAKDTNL 95
Query: 224 SKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK---RAIDVINELGL 280
+K ++ ++G V Q LFPH+TV +T A P + K +EK +A+++++++GL
Sbjct: 96 NK-VREEVGMVFQRFNLFPHMTVLNNITLA-----PMKVRKWPREKAEAKAMELLDKVGL 149
Query: 281 ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 340
+ ++ +SGG+ +RV I + + P ++ DEPTS LD ++ +++
Sbjct: 150 KDKAH-----AYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQ 204
Query: 341 IAEAGKTVVTTIHQ 354
+A G T+V H+
Sbjct: 205 LANEGMTMVVVTHE 218
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 89.4 bits (220), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 110/215 (51%), Gaps = 16/215 (7%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSK-- 230
LN I + GE +AL+GPSGSGK+TLL ++G + +PT G Y D L K
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAG-IYKPTSGK--IYFDEKDVTELPPKDR 75
Query: 231 -IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIG 289
+G V Q+ L+PH+TV + + + LR +++ +K+ +V L +++ +
Sbjct: 76 NVGLVFQNWALYPHMTVYKNIAFPLELR---KAPREEIDKKVREVAKMLHIDKLLN---- 128
Query: 290 GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI-AEAGKTV 348
+ +SGG+++RV I ++ P +L LDEP S LD+ L + L+ + E G T
Sbjct: 129 -RYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITT 187
Query: 349 VTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383
V H + L D++ ++ +G +L G E
Sbjct: 188 VYVTHDQAEALAMA-DRIAVIREGEILQVGTPDEV 221
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 89.4 bits (220), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 71/224 (31%), Positives = 111/224 (49%), Gaps = 16/224 (7%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--- 224
+ + IL I+ P ++A GPSG GK+T+ +LL R +PT G IT + P
Sbjct: 13 DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLE-RFYQPT-AGEITIDGQPIDNIS 70
Query: 225 -KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC 283
++ +S+IGFV+QD + T++E LTY L T + + +E
Sbjct: 71 LENWRSQIGFVSQDSAIMAG-TIRENLTYG----LEGDYTDEDLWQVLDLAFARSFVENM 125
Query: 284 QDTMIGGSFVRGV--SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI 341
D + RGV SGG+R+R+ I + NP +L LDE T+ LDS + +VQ D
Sbjct: 126 PDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESE-SMVQKALDS 184
Query: 342 AEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
G+T + H+ S+ + DK+ + KG + GK +E +A
Sbjct: 185 LMKGRTTLVIAHRLSTIV--DADKIYFIEKGQITGSGKHNELVA 226
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/210 (32%), Positives = 110/210 (52%), Gaps = 15/210 (7%)
Query: 154 DVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG 213
++ +K I S +E IL G+ V G+ +AL+G SG GK+T + L+ RL +P +
Sbjct: 387 NLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQ-RLYDP-LD 444
Query: 214 GSITYNDHPYS----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK 269
G ++ + + L+ IG V+Q+ VLF T+ E + Y + + K KE
Sbjct: 445 GMVSIDGQDIRTINVRYLREIIGVVSQEPVLFA-TTIAENIRYGREDVTMDEIEKAVKEA 503
Query: 270 RAIDVINELGLERCQDTMIGGSFVRG--VSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 327
A D I + L DT++G RG +SGG+++R+ I ++ NP +L LDE TS LD
Sbjct: 504 NAYDFI--MKLPHQFDTLVGE---RGAQLSGGQKQRIAIARALVRNPKILLLDEATSALD 558
Query: 328 STTALRIVQMLQDIAEAGKTVVTTIHQPSS 357
T + +VQ D A G+T + H+ S+
Sbjct: 559 -TESEAVVQAALDKAREGRTTIVIAHRLST 587
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 116/230 (50%), Gaps = 21/230 (9%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL---- 227
+L G++ V G+ LAL+G SG GK+T++ LL R +P G + D K L
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLE-RFYDPMAGS--VFLDGKEIKQLNVQW 1104
Query: 228 -KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN--TLTKQQKEKRAIDVINELGLERCQ 284
++++G V+Q+ +LF ++ E + Y R+ + + + KE I+ L
Sbjct: 1105 LRAQLGIVSQEPILFD-CSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSL--PDKY 1161
Query: 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 344
+T +G + +SGG+++R+ I ++ P +L LDE TS LD T + ++VQ D A
Sbjct: 1162 NTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALD-TESEKVVQEALDKARE 1219
Query: 345 GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA----YFSSI 390
G+T + H+ S+ D ++++ G + G + +A YFS +
Sbjct: 1220 GRTCIVIAHRLST--IQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFSMV 1267
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/210 (32%), Positives = 110/210 (52%), Gaps = 15/210 (7%)
Query: 154 DVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG 213
++ +K I S +E IL G+ V G+ +AL+G SG GK+T + L+ RL +P +
Sbjct: 387 NLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQ-RLYDP-LD 444
Query: 214 GSITYNDHPYS----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK 269
G ++ + + L+ IG V+Q+ VLF T+ E + Y + + K KE
Sbjct: 445 GMVSIDGQDIRTINVRYLREIIGVVSQEPVLFA-TTIAENIRYGREDVTMDEIEKAVKEA 503
Query: 270 RAIDVINELGLERCQDTMIGGSFVRG--VSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 327
A D I + L DT++G RG +SGG+++R+ I ++ NP +L LDE TS LD
Sbjct: 504 NAYDFI--MKLPHQFDTLVGE---RGAQLSGGQKQRIAIARALVRNPKILLLDEATSALD 558
Query: 328 STTALRIVQMLQDIAEAGKTVVTTIHQPSS 357
T + +VQ D A G+T + H+ S+
Sbjct: 559 -TESEAVVQAALDKAREGRTTIVIAHRLST 587
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 116/230 (50%), Gaps = 21/230 (9%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL---- 227
+L G++ V G+ LAL+G SG GK+T++ LL R +P G + D K L
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLE-RFYDPMAGS--VFLDGKEIKQLNVQW 1104
Query: 228 -KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN--TLTKQQKEKRAIDVINELGLERCQ 284
++++G V+Q+ +LF ++ E + Y R+ + + + KE I+ L
Sbjct: 1105 LRAQLGIVSQEPILFD-CSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSL--PDKY 1161
Query: 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 344
+T +G + +SGG+++R+ I ++ P +L LDE TS LD T + ++VQ D A
Sbjct: 1162 NTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALD-TESEKVVQEALDKARE 1219
Query: 345 GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA----YFSSI 390
G+T + H+ S+ D ++++ G + G + +A YFS +
Sbjct: 1220 GRTCIVIAHRLST--IQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFSMV 1267
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 99/210 (47%), Gaps = 11/210 (5%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIG 232
L+ ++ V GE ++GP+G+GKT L L++G + + + D K I
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIA 75
Query: 233 FVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSF 292
FV Q+ LFPH+ VK+ L + ++ K + KR +D +L +E D
Sbjct: 76 FVYQNYSLFPHMNVKKNLEFGMRMK------KIKDPKRVLDTARDLKIEHLLDRN----- 124
Query: 293 VRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTI 352
+SGGE++RV + ++ NP +L LDEP S LD T +ML + + K V I
Sbjct: 125 PLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHI 184
Query: 353 HQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
+ D++ ++ G L+ GK E
Sbjct: 185 THDQTEARIMADRIAVVMDGKLIQVGKPEE 214
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 116/224 (51%), Gaps = 13/224 (5%)
Query: 166 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP--- 222
+ E IL I S+ GE +A +G SG GK+TL+NL+ R + T G I + H
Sbjct: 350 NDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIP-RFYDVT-SGQILIDGHNIKD 407
Query: 223 -YSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE 281
+ SL+++IG V QD++LF TVKE + + + K A D I + L
Sbjct: 408 FLTGSLRNQIGLVQQDNILFSD-TVKENILLGRPTATDEEVVEAAKMANAHDFI--MNLP 464
Query: 282 RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI 341
+ DT +G V+ +SGG+++R+ I + NP +L LDE TS LD + I+Q D+
Sbjct: 465 QGYDTEVGERGVK-LSGGQKQRLSIARIFLNNPPILILDEATSALDLESE-SIIQEALDV 522
Query: 342 AEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
+T + H+ S+ + H DK++++ G ++ G E +A
Sbjct: 523 LSKDRTTLIVAHRLST-ITHA-DKIVVIENGHIVETGTHRELIA 564
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 117/230 (50%), Gaps = 37/230 (16%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS----L 227
IL+ I S+ GEV+ ++G SGSGK+TL L+ R P G + + H + + L
Sbjct: 18 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQ-RFYIPE-NGQVLIDGHDLALADPNWL 75
Query: 228 KSKIGFVTQDDVLF------------PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVI 275
+ ++G V QD+VL P ++V E + YAA K A D I
Sbjct: 76 RRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAA------------KLAGAHDFI 122
Query: 276 NELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIV 335
+EL +T++G G+SGG+R+R+ I ++ NP +L DE TS LD + I+
Sbjct: 123 SEL--REGYNTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 336 QMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
+ + I + G+TV+ H+ S+ D++I++ KG ++ GK E ++
Sbjct: 180 RNMHKICK-GRTVIIIAHRLST--VKNADRIIVMEKGKIVEQGKHKELLS 226
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 117/230 (50%), Gaps = 37/230 (16%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS----L 227
IL+ I S+ GEV+ ++G SGSGK+TL L+ R P G + + H + + L
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQ-RFYIPE-NGQVLIDGHDLALADPNWL 81
Query: 228 KSKIGFVTQDDVLF------------PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVI 275
+ ++G V QD+VL P ++V E + YAA K A D I
Sbjct: 82 RRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAA------------KLAGAHDFI 128
Query: 276 NELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIV 335
+EL +T++G G+SGG+R+R+ I ++ NP +L DE TS LD + I+
Sbjct: 129 SEL--REGYNTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 185
Query: 336 QMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
+ + I + G+TV+ H+ S+ D++I++ KG ++ GK E ++
Sbjct: 186 RNMHKICK-GRTVIIIAHRLST--VKNADRIIVMEKGKIVEQGKHKELLS 232
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 117/221 (52%), Gaps = 25/221 (11%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK---- 228
L+ + ++ GE ++GPSG+GKTT + +++G + T G + ++D + + K
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPST--GELYFDDRLVASNGKLIVP 78
Query: 229 ---SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNT-LTKQQKEKRAIDVINELGLERCQ 284
KIG V Q L+P+LT E + + L N ++K++ KR +V L +
Sbjct: 79 PEDRKIGMVFQTWALYPNLTAFENIAFP----LTNMKMSKEEIRKRVEEVAKILDIHHVL 134
Query: 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS---TTALRIVQMLQDI 341
+ F R +SGG+++RV + ++ +PSLL LDEP S LD+ +A +V+ +Q
Sbjct: 135 N-----HFPRELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQ-- 187
Query: 342 AEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
+ G T++ H P+ +F D++ +L KG L+ GK +
Sbjct: 188 SRLGVTLLVVSHDPAD-IFAIADRVGVLVKGKLVQVGKPED 227
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 117/230 (50%), Gaps = 37/230 (16%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS----L 227
IL+ I S+ GEV+ ++G SGSGK+TL L+ R P G + + H + + L
Sbjct: 20 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQ-RFYIPE-NGQVLIDGHDLALADPNWL 77
Query: 228 KSKIGFVTQDDVLF------------PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVI 275
+ ++G V QD+VL P ++V E + YAA K A D I
Sbjct: 78 RRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAA------------KLAGAHDFI 124
Query: 276 NELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIV 335
+EL +T++G G+SGG+R+R+ I ++ NP +L DE TS LD + I+
Sbjct: 125 SEL--REGYNTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 181
Query: 336 QMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
+ + I + G+TV+ H+ S+ D++I++ KG ++ GK E ++
Sbjct: 182 RNMHKICK-GRTVIIIAHRLST--VKNADRIIVMEKGKIVEQGKHKELLS 228
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 78/245 (31%), Positives = 126/245 (51%), Gaps = 27/245 (11%)
Query: 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME 209
+KF DV++ + +L G+T ++ PG+V AL+GP+GSGK+T+ LL L +
Sbjct: 17 VKFQDVSF-----AYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQ-NLYQ 70
Query: 210 PTVGGSITYN-------DHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNT- 261
PT GG + + DH Y L +++ V Q+ +LF + +E + Y L R P
Sbjct: 71 PT-GGKVLLDGEPLVQYDHHY---LHTQVAAVGQEPLLFGR-SFRENIAYG-LTRTPTME 124
Query: 262 -LTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLD 320
+T E A D I+ G + DT +G + + +SGG+R+ V + +I P LL LD
Sbjct: 125 EITAVAMESGAHDFIS--GFPQGYDTEVGETGNQ-LSGGQRQAVALARALIRKPRLLILD 181
Query: 321 EPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379
TS LD+ LR+ ++L + E A +TV+ Q S L + ++ L +GS+ G
Sbjct: 182 NATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLS--LAERAHHILFLKEGSVCEQGT 239
Query: 380 ASEAM 384
+ M
Sbjct: 240 HLQLM 244
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 70/220 (31%), Positives = 109/220 (49%), Gaps = 26/220 (11%)
Query: 176 ITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSI-----TYNDHPYSKSLKSK 230
I ++ GE + +GPSG GK+TLL +++G +E G + ND P ++
Sbjct: 22 INLDIHEGEFVVFVGPSGCGKSTLLRMIAG--LETITSGDLFIGEKRMNDTPPAER---G 76
Query: 231 IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGG 290
+G V Q L+PHL+V E +++ L+L K+ +R V L L D
Sbjct: 77 VGMVFQSYALYPHLSVAENMSFG--LKLAGA-KKEVINQRVNQVAEVLQLAHLLDRK--- 130
Query: 291 SFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA----EAGK 346
+ +SGG+R+RV IG ++ PS+ LDEP S LD+ ALR VQM +I+ G+
Sbjct: 131 --PKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA--ALR-VQMRIEISRLHKRLGR 185
Query: 347 TVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAY 386
T++ H + DK+++L G + GK E Y
Sbjct: 186 TMIYVTHDQVEAMTLA-DKIVVLDAGRVAQVGKPLELYHY 224
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 70/220 (31%), Positives = 109/220 (49%), Gaps = 26/220 (11%)
Query: 176 ITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSI-----TYNDHPYSKSLKSK 230
I ++ GE + +GPSG GK+TLL +++G +E G + ND P ++
Sbjct: 22 INLDIHEGEFVVFVGPSGCGKSTLLRMIAG--LETITSGDLFIGEKRMNDTPPAER---G 76
Query: 231 IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGG 290
+G V Q L+PHL+V E +++ L+L K+ +R V L L D
Sbjct: 77 VGMVFQSYALYPHLSVAENMSFG--LKLAGA-KKEVINQRVNQVAEVLQLAHLLDRK--- 130
Query: 291 SFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA----EAGK 346
+ +SGG+R+RV IG ++ PS+ LDEP S LD+ ALR VQM +I+ G+
Sbjct: 131 --PKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA--ALR-VQMRIEISRLHKRLGR 185
Query: 347 TVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAY 386
T++ H + DK+++L G + GK E Y
Sbjct: 186 TMIYVTHDQVEAMTLA-DKIVVLDAGRVAQVGKPLELYHY 224
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 86.3 bits (212), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 73/249 (29%), Positives = 127/249 (51%), Gaps = 26/249 (10%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSL 227
+L+G+ SV PG ++A++G +GSGK+TL+NL+ RL++P G + ++ K L
Sbjct: 358 VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIP-RLIDPE-RGRVEVDELDVRTVKLKDL 415
Query: 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTM 287
+ I V Q+ VLF T+KE L + + + + K + D I + L D+
Sbjct: 416 RGHISAVPQETVLFSG-TIKENLKWGREDATDDEIVEAAKIAQIHDFI--ISLPEGYDSR 472
Query: 288 I--GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 345
+ GG R SGG+++R+ I ++ P +L LD+ TS +D T RI+ L+ +
Sbjct: 473 VERGG---RNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGC 529
Query: 346 KTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLL 405
T + T P++ L DK+++L +G + FG E + + C P + ++F
Sbjct: 530 TTFIITQKIPTALL---ADKILVLHEGKVAGFGTHKELLEH-----CKPYREIYESQF-- 579
Query: 406 DLANGNLHD 414
NG ++D
Sbjct: 580 --GNGVMND 586
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 85.9 bits (211), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 117/230 (50%), Gaps = 37/230 (16%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS----L 227
IL+ I S+ GEV+ ++G SGSGK+TL L+ R P G + + H + + L
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQ-RFYIPE-NGQVLIDGHDLALADPNWL 81
Query: 228 KSKIGFVTQDDVLF------------PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVI 275
+ ++G V QD+VL P ++V E + YAA K A D I
Sbjct: 82 RRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAA------------KLAGAHDFI 128
Query: 276 NELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIV 335
+EL +T++G G+SGG+R+R+ I ++ NP +L D+ TS LD + I+
Sbjct: 129 SEL--REGYNTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIM 185
Query: 336 QMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
+ + I + G+TV+ H+ S+ D++I++ KG ++ GK E ++
Sbjct: 186 RNMHKICK-GRTVIIIAHRLST--VKNADRIIVMEKGKIVEQGKHKELLS 232
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 85.9 bits (211), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 117/230 (50%), Gaps = 37/230 (16%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS----L 227
IL+ I S+ GEV+ ++G +GSGK+TL L+ R P G + + H + + L
Sbjct: 20 ILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQ-RFYIPE-NGQVLIDGHDLALADPNWL 77
Query: 228 KSKIGFVTQDDVLF------------PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVI 275
+ ++G V QD+VL P ++V E + YAA K A D I
Sbjct: 78 RRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAA------------KLAGAHDFI 124
Query: 276 NELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIV 335
+EL +T++G G+SGG+R+R+ I ++ NP +L DE TS LD + I+
Sbjct: 125 SEL--REGYNTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 181
Query: 336 QMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
+ + I + G+TV+ H+ S+ D++I++ KG ++ GK E ++
Sbjct: 182 RNMHKICK-GRTVIIIAHRLST--VKNADRIIVMEKGKIVEQGKHKELLS 228
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 85.9 bits (211), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 72/261 (27%), Positives = 124/261 (47%), Gaps = 23/261 (8%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH--PYSKSLKSK 230
+N + ++ GE L L+GPSG GKTT L +++G L EPT G I + D Y
Sbjct: 27 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAG-LEEPT-EGRIYFGDRDVTYLPPKDRN 84
Query: 231 IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGG 290
I V Q ++PH+TV E + + ++ K + +KR E Q +
Sbjct: 85 ISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRV-----RWAAELLQIEELLN 136
Query: 291 SFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVT 350
+ +SGG+R+RV + I++ P +L +DEP S LD+ LR+ + K VT
Sbjct: 137 RYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDA--KLRVAMRAEIKKLQQKLKVT 194
Query: 351 TIHQPSSRL--FHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLDLA 408
TI+ ++ D++ ++ +G LL G +E +S+ + I P +L+++
Sbjct: 195 TIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFVATFIGA-PEMNILEVS 253
Query: 409 NGNLH------DVSVPSELQD 423
G+ + + +P +L D
Sbjct: 254 VGDGYLEGRGFRIELPQDLMD 274
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 85.9 bits (211), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 72/261 (27%), Positives = 124/261 (47%), Gaps = 23/261 (8%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH--PYSKSLKSK 230
+N + ++ GE L L+GPSG GKTT L +++G L EPT G I + D Y
Sbjct: 28 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAG-LEEPT-EGRIYFGDRDVTYLPPKDRN 85
Query: 231 IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGG 290
I V Q ++PH+TV E + + ++ K + +KR E Q +
Sbjct: 86 ISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRV-----RWAAELLQIEELLN 137
Query: 291 SFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVT 350
+ +SGG+R+RV + I++ P +L +DEP S LD+ LR+ + K VT
Sbjct: 138 RYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDA--KLRVAMRAEIKKLQQKLKVT 195
Query: 351 TIHQPSSRL--FHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLDLA 408
TI+ ++ D++ ++ +G LL G +E +S+ + I P +L+++
Sbjct: 196 TIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFVATFIG-APEMNILEVS 254
Query: 409 NGNLH------DVSVPSELQD 423
G+ + + +P +L D
Sbjct: 255 VGDGYLEGRGFRIELPQDLMD 275
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 85.5 bits (210), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 69/220 (31%), Positives = 109/220 (49%), Gaps = 26/220 (11%)
Query: 176 ITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSI-----TYNDHPYSKSLKSK 230
I ++ GE + +GPSG GK+TLL +++G +E G + ND P ++
Sbjct: 22 INLDIHEGEFVVFVGPSGCGKSTLLRMIAG--LETITSGDLFIGEKRMNDTPPAER---G 76
Query: 231 IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGG 290
+G V Q L+PHL+V E +++ L+L K+ +R V L L D
Sbjct: 77 VGMVFQSYALYPHLSVAENMSFG--LKLAGA-KKEVINQRVNQVAEVLQLAHLLDRK--- 130
Query: 291 SFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA----EAGK 346
+ +SGG+R+RV IG ++ PS+ LD+P S LD+ ALR VQM +I+ G+
Sbjct: 131 --PKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDA--ALR-VQMRIEISRLHKRLGR 185
Query: 347 TVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAY 386
T++ H + DK+++L G + GK E Y
Sbjct: 186 TMIYVTHDQVEAMTLA-DKIVVLDAGRVAQVGKPLELYHY 224
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 116/221 (52%), Gaps = 25/221 (11%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK---- 228
L+ + ++ GE ++GPSG+GKTT + +++G + T G + ++D + + K
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPST--GELYFDDRLVASNGKLIVP 78
Query: 229 ---SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNT-LTKQQKEKRAIDVINELGLERCQ 284
KIG V Q L+P+LT E + + L N ++K++ KR +V L +
Sbjct: 79 PEDRKIGMVFQTWALYPNLTAFENIAFP----LTNMKMSKEEIRKRVEEVAKILDIHHVL 134
Query: 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS---TTALRIVQMLQDI 341
+ F R +SG +++RV + ++ +PSLL LDEP S LD+ +A +V+ +Q
Sbjct: 135 N-----HFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQ-- 187
Query: 342 AEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
+ G T++ H P+ +F D++ +L KG L+ GK +
Sbjct: 188 SRLGVTLLVVSHDPAD-IFAIADRVGVLVKGKLVQVGKPED 227
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 108/215 (50%), Gaps = 18/215 (8%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG----GSITYNDHPYSKSLK 228
+ G++ + GE++ L+GPSGSGKTT+L L++G L PT G G D P K
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAG-LERPTKGDVWIGGKRVTDLP---PQK 86
Query: 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMI 288
+G V Q+ LF H+TV + +++ LR + K + + R +++ + LE +
Sbjct: 87 RNVGLVFQNYALFQHMTVYDNVSFG--LR-EKRVPKDEMDARVRELLRFMRLESYAN--- 140
Query: 289 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA-EAGKT 347
F +SGG+++RV + + P +L DEP + +D+ + ++ + E G T
Sbjct: 141 --RFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVT 198
Query: 348 VVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
V H L D++++L +G++ FG E
Sbjct: 199 SVFVTHDQEEAL-EVADRVLVLHEGNVEQFGTPEE 232
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 110/235 (46%), Gaps = 20/235 (8%)
Query: 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS--------K 230
V GE + L+GPSG GKTT L +++G L EP+ G I D + K
Sbjct: 25 EVKDGEFMILLGPSGCGKTTTLRMIAG-LEEPS-RGQIYIGDKLVADPEKGIFVPPKDRD 82
Query: 231 IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGG 290
I V Q L+PH+TV + + + LR + +Q+ ++R +V LGL T +
Sbjct: 83 IAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGL-----TELLN 134
Query: 291 SFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA-EAGKTVV 349
R +SGG+R+RV +G I+ P + +DEP S LD+ +R+ L+ + + G T +
Sbjct: 135 RKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTI 194
Query: 350 TTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFL 404
H + D++ ++ +G L G E ++ + I P FL
Sbjct: 195 YVTHDQVEAMTMG-DRIAVMNRGVLQQVGSPDEVYDKPANTFVAGFIGSPPMNFL 248
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 113/216 (52%), Gaps = 16/216 (7%)
Query: 166 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG-----GSITYND 220
S + +LN I+ S++PGE+L ++G SG GKTTLL L+G +P G G ++
Sbjct: 13 SFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAG-FEQPDSGEISLSGKTIFSK 71
Query: 221 HPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL 280
+ + ++G++ Q+ VLFPHLTV + Y L N + +E++ I+ + L
Sbjct: 72 NTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYG----LGNGKGRTAQERQRIEAM----L 123
Query: 281 ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ-MLQ 339
E + + G + +SGG+++R + + +P L+ LDEP S LD +I + M+
Sbjct: 124 ELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIA 183
Query: 340 DIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375
+ GK+ V H L + D++ ++ +G +L
Sbjct: 184 ALRANGKSAVFVSHDREEALQYA-DRIAVMKQGRIL 218
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 116/230 (50%), Gaps = 37/230 (16%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS----L 227
IL+ I S+ GEV+ ++G SGSGK+TL L+ R P G + + H + + L
Sbjct: 18 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQ-RFYIPE-NGQVLIDGHDLALADPNWL 75
Query: 228 KSKIGFVTQDDVLF------------PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVI 275
+ ++G V QD+VL P ++V E + YAA K A D I
Sbjct: 76 RRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAA------------KLAGAHDFI 122
Query: 276 NELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIV 335
+EL +T++G G+SGG+R+R+ I ++ NP +L DE TS LD + I+
Sbjct: 123 SEL--REGYNTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 336 QMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
+ + I + G+TV+ + S+ D++I++ KG ++ GK E ++
Sbjct: 180 RNMHKICK-GRTVIIIAARLST--VKNADRIIVMEKGKIVEQGKHKELLS 226
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 116/230 (50%), Gaps = 37/230 (16%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS----L 227
IL+ I S+ GEV+ ++G SGSGK+TL L+ R P G + + H + + L
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQ-RFYIPE-NGQVLIDGHDLALADPNWL 81
Query: 228 KSKIGFVTQDDVLF------------PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVI 275
+ ++G V QD+VL P ++V E + YAA K A D I
Sbjct: 82 RRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAA------------KLAGAHDFI 128
Query: 276 NELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIV 335
+EL +T++G G+SGG+R+R+ I ++ NP +L DE TS LD + I+
Sbjct: 129 SEL--REGYNTIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 185
Query: 336 QMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
+ + I + G+TV+ + S+ D++I++ KG ++ GK E ++
Sbjct: 186 RNMHKICK-GRTVIIIAARLST--VKNADRIIVMEKGKIVEQGKHKELLS 232
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 71/235 (30%), Positives = 104/235 (44%), Gaps = 20/235 (8%)
Query: 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS--------K 230
+ GE L L+GPSG GKTT L ++G L EPT G I D+ + K
Sbjct: 28 EIKDGEFLVLLGPSGCGKTTTLRXIAG-LEEPT-RGQIYIEDNLVADPEKGVFVPPKERD 85
Query: 231 IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGG 290
+ V Q L+PH TV + + + LR + KQ+ +KR +V LGL T +
Sbjct: 86 VAXVFQSYALYPHXTVYDNIAFPLKLR---KVPKQEIDKRVREVAEXLGL-----TELLN 137
Query: 291 SFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA-EAGKTVV 349
R +SGG+R+RV +G II P + DEP S LD+ ++ L+ + + G T +
Sbjct: 138 RKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQLGVTTI 197
Query: 350 TTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFL 404
H D++ + KG L G E + + I P FL
Sbjct: 198 YVTHD-QVEAXTXGDRIAVXNKGELQQVGTPDEVYYKPVNTFVAGFIGSPPXNFL 251
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 74/242 (30%), Positives = 124/242 (51%), Gaps = 21/242 (8%)
Query: 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME 209
+KF DV++ + +L G+T ++ PG+V AL+GP+GSGK+T+ LL L +
Sbjct: 17 VKFQDVSF-----AYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQ-NLYQ 70
Query: 210 PTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNT--LT 263
PT GG + + P + L +++ V Q+ +LF + +E + Y L R P +T
Sbjct: 71 PT-GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGR-SFRENIAY-GLTRTPTMEEIT 127
Query: 264 KQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 323
E A D I+ G + DT +G + + ++ G+R+ V + +I P LL LD T
Sbjct: 128 AVAMESGAHDFIS--GFPQGYDTEVGETGNQ-LAVGQRQAVALARALIRKPRLLILDNAT 184
Query: 324 SGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
S LD+ LR+ ++L + E A +TV+ Q S L + ++ L +GS+ G +
Sbjct: 185 SALDAGNQLRVQRLLYESPEWASRTVLLITQQLS--LAERAHHILFLKEGSVCEQGTHLQ 242
Query: 383 AM 384
M
Sbjct: 243 LM 244
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 107/225 (47%), Gaps = 18/225 (8%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228
EK L ++ +N GE L + G +GSGK+TLL +++G L+EPT G + + ++
Sbjct: 19 EKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAG-LIEPTSGDVLYDGERKKGYEIR 77
Query: 229 SKIGFVTQ--DDVLFPHLTVKETLTYAALL---RLPNTLTKQQKEKRAIDVINELGLERC 283
IG Q +D F E R P L K+ E +D +
Sbjct: 78 RNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLD------FDSF 131
Query: 284 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 343
+D + F +SGGE++RV I + I+ P +L LDEP GLD ++++++
Sbjct: 132 KDRV---PFF--LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKT 186
Query: 344 AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFS 388
GKTV+ H + + H D++++L KG ++ G E + +
Sbjct: 187 LGKTVILISHDIETVINH-VDRVVVLEKGKKVFDGTRMEFLEKYD 230
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 107/225 (47%), Gaps = 18/225 (8%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228
EK L ++ +N GE L + G +GSGK+TLL +++G L+EPT G + + ++
Sbjct: 21 EKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAG-LIEPTSGDVLYDGERKKGYEIR 79
Query: 229 SKIGFVTQ--DDVLFPHLTVKETLTYAALL---RLPNTLTKQQKEKRAIDVINELGLERC 283
IG Q +D F E R P L K+ E +D +
Sbjct: 80 RNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLD------FDSF 133
Query: 284 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 343
+D + F +SGGE++RV I + I+ P +L LDEP GLD ++++++
Sbjct: 134 KDRV---PFF--LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKT 188
Query: 344 AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFS 388
GKTV+ H + + H D++++L KG ++ G E + +
Sbjct: 189 LGKTVILISHDIETVINH-VDRVVVLEKGKKVFDGTRMEFLEKYD 232
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 118/241 (48%), Gaps = 21/241 (8%)
Query: 143 EPTLPIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNL 202
E + ++F+DV + L I + G AL+G +GSGK+T+ L
Sbjct: 11 EKKFGVNIEFSDVNF-----SYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKL 65
Query: 203 LSGRLMEP----TVGGSITYNDHPYSK-SLKSKIGFVTQDDVLFPHLTVKETLTYAALLR 257
L R + +GG N + Y++ S++S IG V QD +LF T+K + Y L
Sbjct: 66 LY-RFYDAEGDIKIGGK---NVNKYNRNSIRSIIGIVPQDTILFNE-TIKYNILYGKLDA 120
Query: 258 LPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 317
+ K K + D I L + DT++G ++ +SGGER+R+ I ++ +P ++
Sbjct: 121 TDEEVIKATKSAQLYDFIE--ALPKKWDTIVGNKGMK-LSGGERQRIAIARCLLKDPKIV 177
Query: 318 FLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377
DE TS LDS T + ++D+ + +T++ H+ S+ + +ILL KG ++
Sbjct: 178 IFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLST--ISSAESIILLNKGKIVEK 234
Query: 378 G 378
G
Sbjct: 235 G 235
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 113/217 (52%), Gaps = 13/217 (5%)
Query: 167 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK- 225
++ ++ L ++ +V PG+ LAL+GPSG+GK+T+L LL R + + G I + S+
Sbjct: 64 ADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLF-RFYDIS-SGCIRIDGQDISQV 121
Query: 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER 282
SL+S IG V QD VLF T+ + + Y + + + + D I +
Sbjct: 122 TQASLRSHIGVVPQDTVLFND-TIADNIRYGRVTAGNDEVEAAAQAAGIHDAI--MAFPE 178
Query: 283 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA 342
T +G ++ +SGGE++RV I I+ P ++ LDE TS LD++ I L +
Sbjct: 179 GYRTQVGERGLK-LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVC 237
Query: 343 EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379
A +T + H+ S+ + D+++++ G ++ G+
Sbjct: 238 -ANRTTIVVAHRLSTVV--NADQILVIKDGCIVERGR 271
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 115/222 (51%), Gaps = 21/222 (9%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP--YSKS---- 226
L GI ++ GEV A++G +G GK+TL +G +++P+ G I +++ P YS+
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNG-ILKPS-SGRILFDNKPIDYSRKGIMK 81
Query: 227 LKSKIGFVTQD-DVLFPHLTVKETLTYAAL-LRLPNTLTKQQKEKRAIDVINELGLERCQ 284
L+ IG V QD D +V + +++ A+ ++LP + + KR + + G+E +
Sbjct: 82 LRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLP----EDEIRKRVDNALKRTGIEHLK 137
Query: 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI-AE 343
D +S G++KRV I +++ P +L LDEPT+GLD I+++L ++ E
Sbjct: 138 DKP-----THCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKE 192
Query: 344 AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
G T++ H + D + ++ +G ++ G E A
Sbjct: 193 LGITIIIATHDIDIVPLY-CDNVFVMKEGRVILQGNPKEVFA 233
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 122/229 (53%), Gaps = 26/229 (11%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225
+EK L+ ++ S+ G+ +AL+G SGSGK+T+ NL + R + GSI + H
Sbjct: 354 KEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFT-RFYDVD-SGSICLDGHDVRDYK 411
Query: 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINEL 278
+L+ V+Q+ LF T+ + YAA T++Q E+ A++ I +
Sbjct: 412 LTNLRRHFALVSQNVHLFND-TIANNIAYAA----EGEYTREQIEQAARQAHAMEFIENM 466
Query: 279 --GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ 336
GL DT+IG + +SGG+R+RV I ++ + +L LDE TS LD T + R +Q
Sbjct: 467 PQGL----DTVIGENGT-SLSGGQRQRVAIARALLRDAPVLILDEATSALD-TESERAIQ 520
Query: 337 MLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
D + KTV+ H+ S+ + D+++++ +G ++ G+ ++ +A
Sbjct: 521 AALDELQKNKTVLVIAHRLST--IEQADEILVVDEGEIIERGRHADLLA 567
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 78.6 bits (192), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 129/259 (49%), Gaps = 22/259 (8%)
Query: 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME 209
++F DV++ + + +L G+T ++ PGEV AL+GP+GSGK+T+ LL L +
Sbjct: 15 VQFQDVSF-----AYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQ-NLYQ 68
Query: 210 PTVGGSITYNDHPY----SKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNT--LT 263
PT GG + + P + L ++ V Q+ +F +++E + Y L + P +T
Sbjct: 69 PT-GGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGR-SLQENIAY-GLTQKPTMEEIT 125
Query: 264 KQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 323
+ A I+ GL + DT + + + +SGG+R+ V + +I P +L LD+ T
Sbjct: 126 AAAVKSGAHSFIS--GLPQGYDTEVDEAGSQ-LSGGQRQAVALARALIRKPCVLILDDAT 182
Query: 324 SGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383
S LD+ + L++ Q+L + E V I Q S L + D ++ L G++ G +
Sbjct: 183 SALDANSQLQVEQLLYESPERYSRSVLLITQHLS-LVEQADHILFLEGGAIREGGTHQQL 241
Query: 384 MAYFSSIGCSPQIAMNPAE 402
M GC + PA+
Sbjct: 242 M---EKKGCYWAMVQAPAD 257
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 78.6 bits (192), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 112/223 (50%), Gaps = 17/223 (7%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225
++K +L IT + PG+ +AL+GP+GSGKTT++NLL R + G I + K
Sbjct: 366 KKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLM-RFYDVD-RGQILVDGIDIRKIK 423
Query: 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL--GLE 281
SL+S IG V QD +LF TVKE L Y P ++ KE + + L
Sbjct: 424 RSSLRSSIGIVLQDTILFST-TVKENLKYGN----PGATDEEIKEAAKLTHSDHFIKHLP 478
Query: 282 RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI 341
+T++ + +S G+R+ + I + NP +L LDE TS +D+ T I + +
Sbjct: 479 EGYETVLTDNG-EDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKL 537
Query: 342 AEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384
E GKT + H+ ++ D +I+L G ++ GK E +
Sbjct: 538 ME-GKTSIIIAHRLNT--IKNADLIIVLRDGEIVEMGKHDELI 577
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 113/216 (52%), Gaps = 12/216 (5%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226
+K+IL GI+ + GE+ L+GP+G+GKTT L ++S L++P+ G + + +
Sbjct: 27 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIIS-TLIKPSSGIVTVFGKNVVEEPHE 85
Query: 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDT 286
++ I ++ ++ + ++ E L + A ++ ++ +RA ++ LG E+ +D
Sbjct: 86 VRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAG-LG-EKIKDR 143
Query: 287 MIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGK 346
V S G +++ I +++NP L LDEPTSGLD A + ++L+ ++ G
Sbjct: 144 ------VSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGL 197
Query: 347 TVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
T++ + H F D++ L+ G+++ G E
Sbjct: 198 TILVSSHNMLEVEFL-CDRIALIHNGTIVETGTVEE 232
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 106/201 (52%), Gaps = 25/201 (12%)
Query: 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG----------------G 214
++L G++ G+V++++G SGSGK+T L ++ L +P+ G G
Sbjct: 20 EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINF-LEKPSEGAIIVNGQNINLVRDKDG 78
Query: 215 SITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDV 274
+ D + L++++ V Q L+ H+TV E + A + L L+K +RA+
Sbjct: 79 QLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKHDARERALKY 136
Query: 275 INELGL-ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR 333
+ ++G+ ER Q G + +SGG+++RV I + + P +L DEPTS LD
Sbjct: 137 LAKVGIDERAQ-----GKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGE 191
Query: 334 IVQMLQDIAEAGKTVVTTIHQ 354
+++++Q +AE GKT+V H+
Sbjct: 192 VLRIMQQLAEEGKTMVVVTHE 212
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 76/289 (26%), Positives = 143/289 (49%), Gaps = 40/289 (13%)
Query: 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME 209
+K +++T KV +G + + LN ++ V G++ ++G SG+GK+TL+ ++ L+E
Sbjct: 2 IKLSNIT-KVFHQGTRTIQA---LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVN--LLE 55
Query: 210 PTVGGSI--------TYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAAL-LRLPN 260
GS+ T ++ +K+ + +IG + Q F L+ + AL L L N
Sbjct: 56 RPTEGSVLVDGQELTTLSESELTKA-RRQIGMIFQH---FNLLSSRTVFGNVALPLELDN 111
Query: 261 TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLD 320
T K + ++R ++++ +GL D S+ +SGG+++RV I + NP +L D
Sbjct: 112 T-PKDEVKRRVTELLSLVGLGDKHD-----SYPSNLSGGQKQRVAIARALASNPKVLLCD 165
Query: 321 EPTSGLDSTTALRIVQMLQDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379
E TS LD T I+++L+DI G T++ H+ + D + ++ G L+
Sbjct: 166 EATSALDPATTRSILELLKDINRRLGLTILLITHEMDV-VKRICDCVAVISNGELIEQDT 224
Query: 380 ASEAMAYFSSIGCSPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTE 428
SE ++ P+ + +F+ LH + +P + Q+R+Q E
Sbjct: 225 VSEVFSH-------PKTPL-AQKFI----QSTLH-LDIPEDYQERLQAE 260
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 70/245 (28%), Positives = 126/245 (51%), Gaps = 28/245 (11%)
Query: 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME 209
L+F +VT+ E L I + G+ +AL+G SGSGK+T+ +L++ R +
Sbjct: 342 LEFRNVTFTY------PGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLIT-RFYD 394
Query: 210 PTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQ 265
G I + H + SL++++ V+Q+ LF TV + YA +++
Sbjct: 395 ID-EGHILMDGHDLREYTLASLRNQVALVSQNVHLFND-TVANNIAYAR----TEEYSRE 448
Query: 266 QKEKRA-----IDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLD 320
Q E+ A +D IN++ + DT+IG + V +SGG+R+R+ I ++ + +L LD
Sbjct: 449 QIEEAARMAYAMDFINKM--DNGLDTIIGENGVL-LSGGQRQRIAIARALLRDSPILILD 505
Query: 321 EPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380
E TS LD T + R +Q D + +T + H+ S+ + D+++++ G ++ G
Sbjct: 506 EATSALD-TESERAIQAALDELQKNRTSLVIAHRLST--IEQADEIVVVEDGIIVERGTH 562
Query: 381 SEAMA 385
SE +A
Sbjct: 563 SELLA 567
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 75/289 (25%), Positives = 143/289 (49%), Gaps = 40/289 (13%)
Query: 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME 209
+K +++T KV +G + + LN ++ V G++ ++G SG+GK+TL+ ++ L+E
Sbjct: 25 IKLSNIT-KVFHQGTRTIQA---LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVN--LLE 78
Query: 210 PTVGGSI--------TYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAAL-LRLPN 260
GS+ T ++ +K+ + +IG + Q F L+ + AL L L N
Sbjct: 79 RPTEGSVLVDGQELTTLSESELTKA-RRQIGMIFQH---FNLLSSRTVFGNVALPLELDN 134
Query: 261 TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLD 320
T K + ++R ++++ +GL D S+ +SGG+++RV I + NP +L D
Sbjct: 135 T-PKDEVKRRVTELLSLVGLGDKHD-----SYPSNLSGGQKQRVAIARALASNPKVLLCD 188
Query: 321 EPTSGLDSTTALRIVQMLQDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379
+ TS LD T I+++L+DI G T++ H+ + D + ++ G L+
Sbjct: 189 QATSALDPATTRSILELLKDINRRLGLTILLITHEMDV-VKRICDCVAVISNGELIEQDT 247
Query: 380 ASEAMAYFSSIGCSPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTE 428
SE ++ P+ + +F+ LH + +P + Q+R+Q E
Sbjct: 248 VSEVFSH-------PKTPL-AQKFI----QSTLH-LDIPEDYQERLQAE 283
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 75/289 (25%), Positives = 143/289 (49%), Gaps = 40/289 (13%)
Query: 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME 209
+K +++T KV +G + + LN ++ V G++ ++G SG+GK+TL+ ++ L+E
Sbjct: 25 IKLSNIT-KVFHQGTRTIQA---LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVN--LLE 78
Query: 210 PTVGGSI--------TYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAAL-LRLPN 260
GS+ T ++ +K+ + +IG + Q F L+ + AL L L N
Sbjct: 79 RPTEGSVLVDGQELTTLSESELTKA-RRQIGXIFQH---FNLLSSRTVFGNVALPLELDN 134
Query: 261 TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLD 320
T K + ++R ++++ +GL D S+ +SGG+++RV I + NP +L D
Sbjct: 135 T-PKDEVKRRVTELLSLVGLGDKHD-----SYPSNLSGGQKQRVAIARALASNPKVLLCD 188
Query: 321 EPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379
+ TS LD T I+++L+DI G T++ H+ + D + ++ G L+
Sbjct: 189 QATSALDPATTRSILELLKDINRRLGLTILLITHE-XDVVKRICDCVAVISNGELIEQDT 247
Query: 380 ASEAMAYFSSIGCSPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTE 428
SE ++ P+ + +F+ LH + +P + Q+R+Q E
Sbjct: 248 VSEVFSH-------PKTPL-AQKFI----QSTLH-LDIPEDYQERLQAE 283
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 63/223 (28%), Positives = 118/223 (52%), Gaps = 22/223 (9%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLK 228
L I + G+ +AL+G SGSGK+T+ +L++ R + G I + H + SL+
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLIT-RFYDID-EGEILMDGHDLREYTLASLR 416
Query: 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRA-----IDVINELGLERC 283
+++ V+Q+ LF TV + YA +++Q E+ A +D IN++ +
Sbjct: 417 NQVALVSQNVHLFND-TVANNIAYAR----TEQYSREQIEEAARMAYAMDFINKM--DNG 469
Query: 284 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 343
DT+IG + V +SGG+R+R+ I ++ + +L LDE TS LD T + R +Q D +
Sbjct: 470 LDTVIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALD-TESERAIQAALDELQ 527
Query: 344 AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAY 386
+T + H+ S+ K D+++++ G ++ G ++ + +
Sbjct: 528 KNRTSLVIAHRLST--IEKADEIVVVEDGVIVERGTHNDLLEH 568
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 83/163 (50%), Gaps = 20/163 (12%)
Query: 187 ALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN--DHPYSKSLKSKIGFVTQDDVLFPHL 244
L+GP+G+GK+ L L++G +++P G + N D + IGFV QD LFPHL
Sbjct: 28 VLLGPTGAGKSVFLELIAG-IVKPD-RGEVRLNGADITPLPPERRGIGFVPQDYALFPHL 85
Query: 245 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304
+V + Y + + ++++R ++ +LG+ D +SGGER+RV
Sbjct: 86 SVYRNIAYGL-----RNVERVERDRRVREMAEKLGIAHLLDRKPAR-----LSGGERQRV 135
Query: 305 CIGNEIIINPSLLFLDEPTSGLDSTTA------LRIVQMLQDI 341
+ ++I P LL LDEP S +D T LR VQ D+
Sbjct: 136 ALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDV 178
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 90/202 (44%), Gaps = 30/202 (14%)
Query: 163 GMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP 222
G E + + +N G++LA++G +G GK+TLL+LL G + P G Y
Sbjct: 11 GFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLG-IHRPIQGKIEVY---- 65
Query: 223 YSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP--NTLTK-----QQKEKRAIDVI 275
IGFV Q F L + R NT K Q +A+D +
Sbjct: 66 ------QSIGFVPQ---FFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYL 116
Query: 276 NELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIV 335
N L + + T +SGG+R+ + I I L+ LDEPTS LD ++
Sbjct: 117 NLTHLAKREFT--------SLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVL 168
Query: 336 QMLQDIAEA-GKTVVTTIHQPS 356
+L D+A++ TVV T HQP+
Sbjct: 169 SLLIDLAQSQNMTVVFTTHQPN 190
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 109/224 (48%), Gaps = 22/224 (9%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG-GSITYNDHPYSKSL 227
E L ++G V GE+L L+GP+G+GK+TLL ++G T G GSI + P
Sbjct: 12 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM----TSGKGSIQFAGQPLEAWS 67
Query: 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTM 287
+K+ +L+ ++T +A + + LT Q +K +++N++ D
Sbjct: 68 ATKLALHR------AYLSQQQTPPFAT--PVWHYLTLHQHDKTRTELLNDVAGALALDDK 119
Query: 288 IGGSFVRGVSGGERKRVCIGNEII-----INPS--LLFLDEPTSGLDSTTALRIVQMLQD 340
+G S +SGGE +RV + ++ NP+ LL LD+P + LD + ++L
Sbjct: 120 LGRS-TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSALDKILSA 178
Query: 341 IAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384
+++ G +V + H + L H +L G G +L G+ E +
Sbjct: 179 LSQQGLAIVMSSHDLNHTLRHAHRAWLLKG-GKMLASGRREEVL 221
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 108/224 (48%), Gaps = 22/224 (9%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG-GSITYNDHPYSKSL 227
E L ++G V GE+L L+GP+G+GK+TLL ++G T G GSI + P
Sbjct: 12 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM----TSGKGSIQFAGQPLEAWS 67
Query: 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTM 287
+K+ +L+ ++T +A + + LT Q +K +++N++ D
Sbjct: 68 ATKLALHR------AYLSQQQTPPFAT--PVWHYLTLHQHDKTRTELLNDVAGALALDDK 119
Query: 288 IGGSFVRGVSGGERKRVCIGNEII-----INPS--LLFLDEPTSGLDSTTALRIVQMLQD 340
+G S +SGGE +RV + ++ NP+ LL LD+P LD + ++L
Sbjct: 120 LGRS-TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQQSALDKILSA 178
Query: 341 IAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384
+++ G +V + H + L H +L G G +L G+ E +
Sbjct: 179 LSQQGLAIVMSSHDLNHTLRHAHRAWLLKG-GKMLASGRREEVL 221
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/233 (27%), Positives = 110/233 (47%), Gaps = 22/233 (9%)
Query: 160 ILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG-GSITY 218
I+ + E L ++G V GE+L L+GP+G+GK+TLL +G T G GSI +
Sbjct: 3 IVXQLQDVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGX----TSGKGSIQF 58
Query: 219 NDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL 278
P +K+ +L+ ++T +A + + LT Q +K +++N++
Sbjct: 59 AGQPLEAWSATKLALHR------AYLSQQQTPPFATPVW--HYLTLHQHDKTRTELLNDV 110
Query: 279 GLERCQDTMIGGSFVRGVSGGERKRVCIGNEII-----INPS--LLFLDEPTSGLDSTTA 331
D +G S +SGGE +RV + ++ NP+ LL LDEP + LD
Sbjct: 111 AGALALDDKLGRS-TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQ 169
Query: 332 LRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384
+ ++L +++ G +V + H + L H +L G G L G+ E +
Sbjct: 170 SALDKILSALSQQGLAIVXSSHDLNHTLRHAHRAWLLKG-GKXLASGRREEVL 221
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 90/182 (49%), Gaps = 17/182 (9%)
Query: 165 TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH--- 221
S E+K IL G++ V+PGEV A+MGP+GSGK+TL L+GR GG++ +
Sbjct: 9 VSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLL 68
Query: 222 ---PYSKSLKSKIGFVTQDDVLFPHLT----VKETLTYAALLRLPNTLTKQQKEKRAIDV 274
P ++ I Q V P ++ ++ L R TL + + D+
Sbjct: 69 ALSPEDRA-GEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQ----DL 123
Query: 275 INE-LGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR 333
+ E + L + + ++ S G SGGE+KR I ++ P L LDE SGLD AL+
Sbjct: 124 MEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLD-IDALK 182
Query: 334 IV 335
+V
Sbjct: 183 VV 184
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 64/233 (27%), Positives = 109/233 (46%), Gaps = 22/233 (9%)
Query: 160 ILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG-GSITY 218
I+ + E L ++G V GE+L L+GP+G+GK+TLL +G T G GSI +
Sbjct: 3 IVXQLQDVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGX----TSGKGSIQF 58
Query: 219 NDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL 278
P +K+ +L+ ++T +A + + LT Q +K +++N++
Sbjct: 59 AGQPLEAWSATKLALHR------AYLSQQQTPPFATPVW--HYLTLHQHDKTRTELLNDV 110
Query: 279 GLERCQDTMIGGSFVRGVSGGERKRVCIGNEII-----INPS--LLFLDEPTSGLDSTTA 331
D +G S +SGGE +RV + ++ NP+ LL LDEP + LD
Sbjct: 111 AGALALDDKLGRS-TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQ 169
Query: 332 LRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384
+ ++L + + G +V + H + L H +L G G L G+ E +
Sbjct: 170 SALDKILSALCQQGLAIVXSSHDLNHTLRHAHRAWLLKG-GKXLASGRREEVL 221
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 90/182 (49%), Gaps = 17/182 (9%)
Query: 165 TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH--- 221
S E+K IL G++ V+PGEV A+MGP+GSGK+TL L+GR GG++ +
Sbjct: 28 VSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLL 87
Query: 222 ---PYSKSLKSKIGFVTQDDVLFPHLT----VKETLTYAALLRLPNTLTKQQKEKRAIDV 274
P ++ I Q V P ++ ++ L R TL + + D+
Sbjct: 88 ALSPEDRA-GEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQ----DL 142
Query: 275 INE-LGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR 333
+ E + L + + ++ S G SGGE+KR I ++ P L LDE SGLD AL+
Sbjct: 143 MEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLD-IDALK 201
Query: 334 IV 335
+V
Sbjct: 202 VV 203
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 104/219 (47%), Gaps = 20/219 (9%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN-----DHPYSKSL 227
+ GI V G+++ L+G +G+GKTT L+ ++G + G I +N + P
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQK--GKIIFNGQDITNKPAHVIN 79
Query: 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTM 287
+ I V + +FP LTV E L A R ++ KR ++ I L R ++ +
Sbjct: 80 RXGIALVPEGRRIFPELTVYENLXXGAYNR-----KDKEGIKRDLEWIFSL-FPRLKERL 133
Query: 288 --IGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 345
+GG+ SGGE++ + IG + P LL DEP+ GL + +++Q I + G
Sbjct: 134 KQLGGTL----SGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEG 189
Query: 346 KTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384
T++ + Q + +L G ++ GKASE +
Sbjct: 190 TTIL-LVEQNALGALKVAHYGYVLETGQIVLEGKASELL 227
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 100/213 (46%), Gaps = 15/213 (7%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL-KSK 230
+L + G++ ++G +GSGKTTLL +L+G L G I + P L +
Sbjct: 26 VLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLL---AAAGEIFLDGSPADPFLLRKN 82
Query: 231 IGFVTQD-DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIG 289
+G+V Q+ TV+E + ++ + L + + KR V+ +GL + +
Sbjct: 83 VGYVFQNPSSQIIGATVEEDVAFSLEIM---GLDESEMRKRIKKVLELVGL-----SGLA 134
Query: 290 GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVV 349
+ +SGG+++R+ I + + + L LDEP S LD + I Q+L+ + GK ++
Sbjct: 135 AADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKGII 194
Query: 350 TTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
H+ D ++ + G++ + G E
Sbjct: 195 LVTHELE--YLDDMDFILHISNGTIDFCGSWEE 225
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 113/244 (46%), Gaps = 37/244 (15%)
Query: 150 LKFTDVTYKVILKGMTSSEEKD---ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGR 206
L++ T +V+++ +T+ E+ +L I + G++LA+ G +G+GKT+LL ++ G
Sbjct: 10 LEYNLTTTEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE 69
Query: 207 LMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQ 266
L EP+ G I ++ +I F +Q + P T+KE + +
Sbjct: 70 L-EPS-EGKIKHS---------GRISFCSQFSWIMPG-TIKENIIFGV----------SY 107
Query: 267 KEKRAIDVINELGLERC------QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLD 320
E R VI LE +D ++ G +SGG+R R+ + + + L LD
Sbjct: 108 DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLD 167
Query: 321 EPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFH--KFDKLILLGKGSLLYFG 378
P LD T I + A KT + +S++ H K DK+++L +GS ++G
Sbjct: 168 SPFGYLDVLTEKEIFESCVCKLMANKTRILV----TSKMEHLKKADKILILHEGSSYFYG 223
Query: 379 KASE 382
SE
Sbjct: 224 TFSE 227
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 108/227 (47%), Gaps = 22/227 (9%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--- 224
+++ ++N ++ + GE++A++GP+G+GK+TLL LL+G L P+ G + S
Sbjct: 22 QQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYL-SPSHGECHLLGQNLNSWQP 80
Query: 225 KSLKSKIGFVTQ-DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC 283
K+L + Q ++ FP +V E + R P + ++++A+ + + +
Sbjct: 81 KALARTRAVMRQYSELAFP-FSVSEVIQMG---RAPYGGS---QDRQALQQV----MAQT 129
Query: 284 QDTMIGGSFVRGVSGGERKRVCIGNEIII------NPSLLFLDEPTSGLDSTTALRIVQM 337
+ R +SGGE++RV + + P LFLDEPTS LD +++
Sbjct: 130 DCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRL 189
Query: 338 LQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384
L+ + V + + D+++LL +G L+ G E +
Sbjct: 190 LRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVL 236
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 106/234 (45%), Gaps = 40/234 (17%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI 231
+L I + G++LA+ G +G+GKT+LL ++ G L EP+ G I ++ +I
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL-EPSE-GKIKHS---------GRI 101
Query: 232 GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC------QD 285
F +Q+ + P T+KE N + E R VI LE +D
Sbjct: 102 SFCSQNSWIMPG-TIKE-----------NIIGVSYDEYRYRSVIKACQLEEDISKFAEKD 149
Query: 286 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 345
++ G +SGG+R R+ + + + L LD P LD T I + A
Sbjct: 150 NIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMAN 209
Query: 346 KTVVTTIHQPSSRLFH--KFDKLILLGKGSLLYFGKASEAMAY---FSS--IGC 392
KT + +S++ H K DK+++L +GS ++G SE FSS +GC
Sbjct: 210 KTRILV----TSKMEHLKKADKILILHEGSSYFYGTFSELQNLRPDFSSKLMGC 259
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 106/234 (45%), Gaps = 40/234 (17%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI 231
+L I + G++LA+ G +G+GKT+LL ++ G L EP+ G I ++ +I
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL-EPSE-GKIKHS---------GRI 101
Query: 232 GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC------QD 285
F +Q+ + P T+KE N + E R VI LE +D
Sbjct: 102 SFCSQNSWIMPG-TIKE-----------NIIGVSYDEYRYRSVIKACQLEEDISKFAEKD 149
Query: 286 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 345
++ G +SGG+R R+ + + + L LD P LD T I + A
Sbjct: 150 NIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMAN 209
Query: 346 KTVVTTIHQPSSRLFH--KFDKLILLGKGSLLYFGKASEAMAY---FSS--IGC 392
KT + +S++ H K DK+++L +GS ++G SE FSS +GC
Sbjct: 210 KTRILV----TSKMEHLKKADKILILHEGSSYFYGTFSELQNLRPDFSSKLMGC 259
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 106/227 (46%), Gaps = 23/227 (10%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI- 231
L+G++ SVN G+V ++GP+GSGK+TL+N+++G L G + + + + +++
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADE--GRVYFENKDITNKEPAELY 80
Query: 232 --GFVT--QDDVLFPHLTVKETLTYAALLRLPNTLT----------KQQKEKRAIDVINE 277
G V Q +TV E L + + L +++ ++A ++
Sbjct: 81 HYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEF 140
Query: 278 LGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 337
L L D G +SGG+ K V IG ++ NP ++ +DEP +G+ A I
Sbjct: 141 LKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNH 195
Query: 338 LQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384
+ ++ G T + H+ L + D L ++ G ++ G+ E +
Sbjct: 196 VLELKAKGITFLIIEHRLDIVL-NYIDHLYVMFNGQIIAEGRGEEEI 241
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 110/238 (46%), Gaps = 37/238 (15%)
Query: 156 TYKVILKGMTSSEEKD---ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTV 212
T +V+++ +T+ E+ +L I + G++LA+ G +G+GKT+LL ++ G L EP+
Sbjct: 4 TTEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL-EPS- 61
Query: 213 GGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAI 272
G I ++ +I F +Q + P T+KE + + E R
Sbjct: 62 EGKIKHS---------GRISFCSQFSWIMPG-TIKENIIFGV----------SYDEYRYR 101
Query: 273 DVINELGLERC------QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGL 326
VI LE +D ++ G +SGG+R R+ + + + L LD P L
Sbjct: 102 SVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYL 161
Query: 327 DSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFH--KFDKLILLGKGSLLYFGKASE 382
D T I + A KT + +S++ H K DK+++L +GS ++G SE
Sbjct: 162 DVLTEKEIFESCVCKLMANKTRILV----TSKMEHLKKADKILILHEGSSYFYGTFSE 215
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 110/238 (46%), Gaps = 38/238 (15%)
Query: 156 TYKVILKGMTSSEEKD---ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTV 212
T +V+++ +T+ E+ +L I + G++LA+ G +G+GKT+LL ++ G L EP+
Sbjct: 4 TTEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL-EPS- 61
Query: 213 GGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAI 272
G I ++ +I F +Q + P T+KE N + E R
Sbjct: 62 EGKIKHS---------GRISFCSQFSWIMPG-TIKE-----------NIIGVSYDEYRYR 100
Query: 273 DVINELGLERC------QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGL 326
VI LE +D ++ G +SGG+R R+ + + + L LD P L
Sbjct: 101 SVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYL 160
Query: 327 DSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFH--KFDKLILLGKGSLLYFGKASE 382
D T I + A KT + +S++ H K DK+++L +GS ++G SE
Sbjct: 161 DVLTEKEIFESCVCKLMANKTRILV----TSKMEHLKKADKILILHEGSSYFYGTFSE 214
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 98/219 (44%), Gaps = 34/219 (15%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI 231
+L I ++ GE+LA+ G +GSGKT+LL L+ G L G I ++ ++
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASE--GIIKHS---------GRV 101
Query: 232 GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC------QD 285
F +Q + P T+KE + + E R V+ L++ QD
Sbjct: 102 SFCSQFSWIMPG-TIKENIIFGV----------SYDEYRYKSVVKACQLQQDITKFAEQD 150
Query: 286 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 345
+ G +SGG+R R+ + + + L LD P LD T ++ + A
Sbjct: 151 NTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMAN 210
Query: 346 KTVVTTIHQPSSRLFH--KFDKLILLGKGSLLYFGKASE 382
KT + +S++ H K DK+++L +GS ++G SE
Sbjct: 211 KTRILV----TSKMEHLRKADKILILHQGSSYFYGTFSE 245
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 98/219 (44%), Gaps = 34/219 (15%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI 231
+L I ++ GE+LA+ G +GSGKT+LL L+ G L G I ++ ++
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASE--GIIKHS---------GRV 101
Query: 232 GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC------QD 285
F +Q + P T+KE + + E R V+ L++ QD
Sbjct: 102 SFCSQFSWIMPG-TIKENIIFGV----------SYDEYRYKSVVKACQLQQDITKFAEQD 150
Query: 286 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 345
+ G +SGG+R R+ + + + L LD P LD T ++ + A
Sbjct: 151 NTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMAN 210
Query: 346 KTVVTTIHQPSSRLFH--KFDKLILLGKGSLLYFGKASE 382
KT + +S++ H K DK+++L +GS ++G SE
Sbjct: 211 KTRILV----TSKMEHLRKADKILILHQGSSYFYGTFSE 245
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 107/227 (47%), Gaps = 23/227 (10%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI- 231
L+G++ SVN G+V ++GP+GSGK+TL+N+++G L G + + + + +++
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADE--GRVYFENKDITNKEPAELY 80
Query: 232 --GFVT--QDDVLFPHLTVKETLTYAAL---------LRLPNTLTKQQKE-KRAIDVINE 277
G V Q +TV E L + L + K+++ ++A ++
Sbjct: 81 HYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEF 140
Query: 278 LGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 337
L L D G +SGG+ K V IG ++ NP ++ +D+P +G+ A I
Sbjct: 141 LKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNH 195
Query: 338 LQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384
+ ++ G T + H+ L + D L ++ G ++ G+ E +
Sbjct: 196 VLELKAKGITFLIIEHRLDIVL-NYIDHLYVMFNGQIIAEGRGEEEI 241
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 98/219 (44%), Gaps = 35/219 (15%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI 231
+L I ++ GE+LA+ G +GSGKT+LL L+ G L G I ++ ++
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASE--GIIKHS---------GRV 101
Query: 232 GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC------QD 285
F +Q + P T+KE N + E R V+ L++ QD
Sbjct: 102 SFCSQFSWIMPG-TIKE-----------NIIGVSYDEYRYKSVVKACQLQQDITKFAEQD 149
Query: 286 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 345
+ G +SGG+R R+ + + + L LD P LD T ++ + A
Sbjct: 150 NTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMAN 209
Query: 346 KTVVTTIHQPSSRLFH--KFDKLILLGKGSLLYFGKASE 382
KT + +S++ H K DK+++L +GS ++G SE
Sbjct: 210 KTRILV----TSKMEHLRKADKILILHQGSSYFYGTFSE 244
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 104/234 (44%), Gaps = 39/234 (16%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI 231
+L I + G++LA+ G +G+GKT+LL ++ G L EP+ G I ++ +I
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL-EPSE-GKIKHS---------GRI 101
Query: 232 GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC------QD 285
F +Q + P T+KE + E R VI LE +D
Sbjct: 102 SFCSQFSWIMPG-TIKENIIAGV----------SYDEYRYRSVIKACQLEEDISKFAEKD 150
Query: 286 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 345
++ G +SGG+R R+ + + + L LD P LD T I + A
Sbjct: 151 NIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMAN 210
Query: 346 KTVVTTIHQPSSRLFH--KFDKLILLGKGSLLYFGKASEAMAY---FSS--IGC 392
KT + +S++ H K DK+++L +GS ++G SE FSS +GC
Sbjct: 211 KTRILV----TSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKLMGC 260
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 90/184 (48%), Gaps = 21/184 (11%)
Query: 180 VNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND----------HPYSKSLKS 229
V G V+ ++GP+G+GK+T + +L+G+L+ G + +++ Y + LK+
Sbjct: 44 VKEGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKN 103
Query: 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIG 289
G + V+ P + + A ++ L K + + +V+ L LE + I
Sbjct: 104 --GEIRP--VVKPQYV--DLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREI- 156
Query: 290 GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVV 349
+ +SGGE +RV I ++ N + F DEP+S LD L + ++ ++E GK+V+
Sbjct: 157 ----QHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVL 212
Query: 350 TTIH 353
H
Sbjct: 213 VVEH 216
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 91/203 (44%), Gaps = 24/203 (11%)
Query: 178 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQD 237
G + GEV+ ++GP+G GKTT + L+G + EPT G + ++ K ++ D
Sbjct: 307 GEIKKGEVIGIVGPNGIGKTTFVKXLAG-VEEPTEG------KIEWDLTVAYKPQYIKAD 359
Query: 238 DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297
TV E L+ +L + K + ++ LG+ D V +S
Sbjct: 360 ----YEGTVYELLSKIDASKLNSNFYKTE-------LLKPLGIIDLYDRE-----VNELS 403
Query: 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSS 357
GGE +RV I ++ + + LDEP++ LD L + + ++ + E + +
Sbjct: 404 GGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVEHDVL 463
Query: 358 RLFHKFDKLILLGKGSLLYFGKA 380
+ + D+L + +G +G+A
Sbjct: 464 XIDYVSDRLXVF-EGEPGKYGRA 485
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 97/219 (44%), Gaps = 34/219 (15%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI 231
+L I ++ GE+LA+ G +GSGKT+LL L+ G L G I ++ ++
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASE--GIIKHS---------GRV 101
Query: 232 GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC------QD 285
F +Q + P T+KE + E R V+ L++ QD
Sbjct: 102 SFCSQFSWIMPG-TIKENIIRGV----------SYDEYRYKSVVKACQLQQDITKFAEQD 150
Query: 286 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 345
+ G +SGG+R R+ + + + L LD P LD T ++ + A
Sbjct: 151 NTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMAN 210
Query: 346 KTVVTTIHQPSSRLFH--KFDKLILLGKGSLLYFGKASE 382
KT + +S++ H K DK+++L +GS ++G SE
Sbjct: 211 KTRILV----TSKMEHLRKADKILILHQGSSYFYGTFSE 245
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 97/219 (44%), Gaps = 34/219 (15%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI 231
+L I ++ GE+LA+ G +GSGKT+LL L+ G L G I ++ ++
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASE--GIIKHS---------GRV 101
Query: 232 GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC------QD 285
F +Q + P T+KE + E R V+ L++ QD
Sbjct: 102 SFCSQFSWIMPG-TIKENIISGV----------SYDEYRYKSVVKACQLQQDITKFAEQD 150
Query: 286 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 345
+ G +SGG+R R+ + + + L LD P LD T ++ + A
Sbjct: 151 NTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMAN 210
Query: 346 KTVVTTIHQPSSRLFH--KFDKLILLGKGSLLYFGKASE 382
KT + +S++ H K DK+++L +GS ++G SE
Sbjct: 211 KTRILV----TSKMEHLRKADKILILHQGSSYFYGTFSE 245
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 106/227 (46%), Gaps = 23/227 (10%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI- 231
L+G++ SV G+V ++GP+GSGK+TL+N+++G L G + + + + +++
Sbjct: 23 LDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADE--GRVYFENKDITNKEPAELY 80
Query: 232 --GFVT--QDDVLFPHLTVKETLTYAAL---------LRLPNTLTKQQKE-KRAIDVINE 277
G V Q +TV E L + L + K+++ ++A ++
Sbjct: 81 HYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEF 140
Query: 278 LGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 337
L L D G +SGG+ K V IG ++ NP ++ +DEP +G+ A I
Sbjct: 141 LKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNH 195
Query: 338 LQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384
+ ++ G T + H+ L + D L ++ G ++ G+ E +
Sbjct: 196 VLELKAKGITFLIIEHRLDIVL-NYIDHLYVMFNGQIIAEGRGEEEI 241
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 103/195 (52%), Gaps = 15/195 (7%)
Query: 158 KVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT 217
K+ ++ ++ +K +L IT ++ G V+ GP+G GKTTLL +S L +P + G I
Sbjct: 10 KLEIRDLSVGYDKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYL-KP-LKGEII 67
Query: 218 YNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINE 277
YN P +K +K KI F+ ++ ++ ++V++ L A+ L + + A++ +
Sbjct: 68 YNGVPITK-VKGKIFFLPEEIIVPRKISVEDYL--KAVASLYGVKVNKNEIMDALESVEV 124
Query: 278 LGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ- 336
L L++ + S G +RV + + +++N + LD+P +D + ++++
Sbjct: 125 LDLKKKLGEL---------SQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKS 175
Query: 337 MLQDIAEAGKTVVTT 351
+L+ + E G ++++
Sbjct: 176 ILEILKEKGIVIISS 190
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 83/173 (47%), Gaps = 17/173 (9%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH------PYSK 225
IL G+ V GEV ALMGP+G+GK+TL +L+G G I + P +
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDER 77
Query: 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQ---KEKRAIDVINELGLER 282
+ K + Q V P +T+ L A +L + + K K+A+++++
Sbjct: 78 ARKG-LFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLD------ 130
Query: 283 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIV 335
++ + G SGGE+KR I +++ P+ LDE SGLD AL++V
Sbjct: 131 WDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLD-IDALKVV 182
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 85/180 (47%), Gaps = 42/180 (23%)
Query: 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT-YNDHPYSKSLK 228
K IL I+ + G+ L G +G+GKTTLLN+L+ EP G++ + P
Sbjct: 34 KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNA--YEPATSGTVNLFGKXP------ 85
Query: 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVI-----NELGLERC 283
K+G+ + TV++ + + + + L K Q+ +R IDV+ +G+ +
Sbjct: 86 GKVGYSAE--------TVRQHIGFVS----HSLLEKFQEGERVIDVVISGAFKSIGVYQD 133
Query: 284 QD-----------TMIGGS-----FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 327
D ++G S ++ +S GE++RV I + P +L LDEP +GLD
Sbjct: 134 IDDEIRNEAHQLLKLVGXSAKAQQYIGYLSTGEKQRVXIARALXGQPQVLILDEPAAGLD 193
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 104/234 (44%), Gaps = 39/234 (16%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI 231
+L I + G++LA+ G +G+GKT+LL ++ G L EP+ G I ++ +I
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL-EPSE-GKIKHS---------GRI 101
Query: 232 GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC------QD 285
F +Q + P T+KE + + E R VI LE +D
Sbjct: 102 SFCSQFSWIMPG-TIKENIIFGV----------SYDEYRYRSVIKACQLEEDISKFAEKD 150
Query: 286 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 345
++ G +S G++ ++ + + + L LD P LD T I + A
Sbjct: 151 NIVLGEGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMAN 210
Query: 346 KTVVTTIHQPSSRLFH--KFDKLILLGKGSLLYFGKASEAMAY---FSS--IGC 392
KT + +S++ H K DK+++L +GS ++G SE FSS +GC
Sbjct: 211 KTRILV----TSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKLMGC 260
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 104/234 (44%), Gaps = 40/234 (17%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI 231
+L I + G++LA+ G +G+GKT+LL ++ G L EP+ G I ++ +I
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL-EPSE-GKIKHS---------GRI 101
Query: 232 GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC------QD 285
F +Q + P T+KE N + E R VI LE +D
Sbjct: 102 SFCSQFSWIMPG-TIKE-----------NIIGVSYDEYRYRSVIKACQLEEDISKFAEKD 149
Query: 286 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 345
++ G +S G++ ++ + + + L LD P LD T I + A
Sbjct: 150 NIVLGEGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMAN 209
Query: 346 KTVVTTIHQPSSRLFH--KFDKLILLGKGSLLYFGKASEAMAY---FSS--IGC 392
KT + +S++ H K DK+++L +GS ++G SE FSS +GC
Sbjct: 210 KTRILV----TSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKLMGC 259
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 90/182 (49%), Gaps = 17/182 (9%)
Query: 180 VNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDV 239
V G V+ ++GP+G+GKTT + +L+G+L+ ++ ++ + +++ G Q+
Sbjct: 114 VKDGMVVGIVGPNGTGKTTAVKILAGQLIP-----NLCEDNDSWDNVIRAFRGNELQN-- 166
Query: 240 LFPHLT---VKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-----LERCQDTMIGGS 291
F L ++ + + LP + + +E + ++E+G ++ + +
Sbjct: 167 YFERLKNGEIRPVVKPQYVDLLPKAVKGKVRE--LLKKVDEVGKFEEVVKELELENVLDR 224
Query: 292 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTT 351
+ +SGGE +RV I ++ F DEP+S LD L++ ++++ +A GK V+
Sbjct: 225 ELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVV 284
Query: 352 IH 353
H
Sbjct: 285 EH 286
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 87/192 (45%), Gaps = 23/192 (11%)
Query: 178 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQD 237
G + GEV+ ++GP+G GKTT + +L+G + EPT G + ++ K ++ +
Sbjct: 377 GEIRKGEVIGIVGPNGIGKTTFVKMLAG-VEEPTEGKV------EWDLTVAYKPQYIKAE 429
Query: 238 DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297
TV E L+ +L + K + ++ LG+ D V +S
Sbjct: 430 ----YEGTVYELLSKIDSSKLNSNFYKTE-------LLKPLGIIDLYDRN-----VEDLS 473
Query: 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSS 357
GGE +RV I ++ + + LDEP++ LD L + + ++ + E + +
Sbjct: 474 GGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL 533
Query: 358 RLFHKFDKLILL 369
+ + D+LI+
Sbjct: 534 MIDYVSDRLIVF 545
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 90/182 (49%), Gaps = 17/182 (9%)
Query: 180 VNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDV 239
V G V+ ++GP+G+GKTT + +L+G+L+ ++ ++ + +++ G Q+
Sbjct: 100 VKDGMVVGIVGPNGTGKTTAVKILAGQLIP-----NLCEDNDSWDNVIRAFRGNELQN-- 152
Query: 240 LFPHLT---VKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-----LERCQDTMIGGS 291
F L ++ + + LP + + +E + ++E+G ++ + +
Sbjct: 153 YFERLKNGEIRPVVKPQYVDLLPKAVKGKVRE--LLKKVDEVGKFEEVVKELELENVLDR 210
Query: 292 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTT 351
+ +SGGE +RV I ++ F DEP+S LD L++ ++++ +A GK V+
Sbjct: 211 ELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVV 270
Query: 352 IH 353
H
Sbjct: 271 EH 272
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 87/192 (45%), Gaps = 23/192 (11%)
Query: 178 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQD 237
G + GEV+ ++GP+G GKTT + +L+G + EPT G + ++ K ++ +
Sbjct: 363 GEIRKGEVIGIVGPNGIGKTTFVKMLAG-VEEPTEGKV------EWDLTVAYKPQYIKAE 415
Query: 238 DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297
TV E L+ +L + K + ++ LG+ D V +S
Sbjct: 416 ----YEGTVYELLSKIDSSKLNSNFYKTE-------LLKPLGIIDLYDRN-----VEDLS 459
Query: 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSS 357
GGE +RV I ++ + + LDEP++ LD L + + ++ + E + +
Sbjct: 460 GGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL 519
Query: 358 RLFHKFDKLILL 369
+ + D+LI+
Sbjct: 520 MIDYVSDRLIVF 531
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 82/184 (44%), Gaps = 18/184 (9%)
Query: 182 PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP---------YSKSLKSKIG 232
PG+VL L+G +G GK+T L +L+G+ +P +G ++D P L++
Sbjct: 102 PGQVLGLVGTNGIGKSTALKILAGK-QKPNLG---RFDDPPEWQEIIKYFRGSELQNYFT 157
Query: 233 FVTQDDV---LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIG 289
+ +DD+ + P ++ L K + EK DV + + + ++ +
Sbjct: 158 KMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVL-- 215
Query: 290 GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVV 349
+ +SGGE +R IG + + DEP+S LD L Q+++ + K V+
Sbjct: 216 KRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVI 275
Query: 350 TTIH 353
H
Sbjct: 276 CVEH 279
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 72/159 (45%), Gaps = 27/159 (16%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSI-TYNDHPYSKSLKSK 230
+LN G + E+L +MG +G+GKTTL+ LL+G L +P G I N + + K
Sbjct: 367 VLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGAL-KPDEGQDIPKLNVSMKPQKIAPK 425
Query: 231 I-GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIG 289
G V Q LF + L P T K R D+I++
Sbjct: 426 FPGTVRQ---LFFKKIRGQFLN-------PQFQTDVVKPLRIDDIIDQE----------- 464
Query: 290 GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 328
V+ +SGGE +RV I + I + +DEP++ LDS
Sbjct: 465 ---VQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDS 500
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 82/180 (45%), Gaps = 26/180 (14%)
Query: 174 NGITGSVNPGEVLALMGPSGSGKTTLLN-----------LLSGRLMEPTVGGSITYNDHP 222
+GI+ + V A++G S SGK+T++ +LSGR++ +T +
Sbjct: 25 DGISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKG-KDLLTMREEE 83
Query: 223 YSKSLKSKIGFVTQ--DDVLFPHLTV----KETLTYAALLRLPNTLTKQQKEKRAIDVIN 276
K +I V Q L P + V K+T+ + + L ++ EK
Sbjct: 84 LRKIRWKEIALVPQAAQQSLNPTMKVIEHFKDTVEAHGVRWSHSELIEKASEK------- 136
Query: 277 ELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ 336
L + R + S+ +SGG ++RV I ++++P +L LDEPTS LD T I+Q
Sbjct: 137 -LRMVRLNPEAVLNSYPLQLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQ 195
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 99/221 (44%), Gaps = 32/221 (14%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIG 232
LNGIT S+ G ++A++G G GK++LL+ L + V G + ++K +
Sbjct: 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEM--DKVEGHV---------AIKGSVA 69
Query: 233 FVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD-TMIGGS 291
+V Q + +++E + + L P + Q A ++ +L + D T IG
Sbjct: 70 YVPQ-QAWIQNDSLRENILFGCQLEEPYYRSVIQ----ACALLPDLEILPSGDRTEIGEK 124
Query: 292 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ-------MLQDIAEA 344
V +SGG+++RV + + N + D+P S +D+ I + ML++
Sbjct: 125 GVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKN---- 179
Query: 345 GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
KT + H S + D +I++ G + G E +A
Sbjct: 180 -KTRILVTH--SMSYLPQVDVIIVMSGGKISEMGSYQELLA 217
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 78/171 (45%), Gaps = 28/171 (16%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN----DHPYSKSL 227
IL I+ S++PG+ + L+G +GSGK+TLL+ RL+ G I + D +
Sbjct: 36 ILENISFSISPGQRVGLLGRTGSGKSTLLSAFL-RLL--NTEGEIQIDGVSWDSITLEQW 92
Query: 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD-- 285
+ G + Q +F T ++ L PN Q+ + D E+GL +
Sbjct: 93 RKAFGVIPQKVFIFSG-TFRKNLD-------PNAAHSDQEIWKVAD---EVGLRSVIEQF 141
Query: 286 ------TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTT 330
++ G V +S G ++ +C+ ++ +L LDEP++ LD T
Sbjct: 142 PGKLDFVLVDGGCV--LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVT 190
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 16/138 (11%)
Query: 269 KRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII---INPSLLFLDEPTSG 325
KR + V++++GL + G +SGGE +R+ + +E+ +L LDEPT G
Sbjct: 783 KRTLQVLHDVGLGYVK----LGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVG 838
Query: 326 LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
L ++V++L + + G TV+ H + D +I LG + +
Sbjct: 839 LHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD--VIKNADHIIDLGP-------EGGKEGG 889
Query: 386 YFSSIGCSPQIAMNPAEF 403
Y + G +IA NP +
Sbjct: 890 YIVATGTPEEIAKNPHSY 907
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 296 VSGGERKRVCIGNEII--INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIH 353
+SGGE +R+ + +I + + LDEPT GL R+++ L+ + + G TV+ H
Sbjct: 465 LSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEH 524
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 83/195 (42%), Gaps = 25/195 (12%)
Query: 177 TGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQ 236
G GE++ ++GP+G GKTT +L G + GS+T P + L K
Sbjct: 288 NGEAKEGEIIGILGPNGIGKTTFARILVGEITADE--GSVT----PEKQILSYK------ 335
Query: 237 DDVLFPHL--TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVR 294
+FP+ TV++ L A+ L + + +V L L R + S V
Sbjct: 336 PQRIFPNYDGTVQQYLENASKDALSTSSWFFE------EVTKRLNLHRLLE-----SNVN 384
Query: 295 GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQ 354
+SGGE +++ I + L LD+P+S LD + + ++ + K V I
Sbjct: 385 DLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDH 444
Query: 355 PSSRLFHKFDKLILL 369
S + D++I+
Sbjct: 445 DLSIHDYIADRIIVF 459
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 81/189 (42%), Gaps = 40/189 (21%)
Query: 185 VLALMGPSGSGKTTLLNLLSGRLMEPTVG----------------GSITYN--DHPYSKS 226
+L ++G +G GKTT+L +L+G ++ P G G YN YS
Sbjct: 27 ILGVLGKNGVGKTTVLKILAGEII-PNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNE 85
Query: 227 LK--SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 284
LK KI +V F TV E LT + ++ K+ +++N L +
Sbjct: 86 LKIVHKIQYVEYASK-FLKGTVNEILT---------KIDERGKKDEVKELLNMTNL-WNK 134
Query: 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 344
D I +SGG +R+ + ++ + D+P+S LD + + + ++++ +
Sbjct: 135 DANI-------LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK- 186
Query: 345 GKTVVTTIH 353
K V+ H
Sbjct: 187 NKYVIVVDH 195
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 7/88 (7%)
Query: 270 RAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINP---SLLFLDEPTSGL 326
RA+D + E+GL + G +SGGE +R+ + E+ + ++ LDEPT+GL
Sbjct: 709 RALDTLREVGL----GYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGL 764
Query: 327 DSTTALRIVQMLQDIAEAGKTVVTTIHQ 354
R+ + L + +AG TV+ H+
Sbjct: 765 HPADVERLQRQLVKLVDAGNTVIAVEHK 792
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 11/59 (18%)
Query: 186 LALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHL 244
+A++GP+G+GK+TL+N+L+G L+ PT G T+ + +I ++ Q F H+
Sbjct: 702 IAVIGPNGAGKSTLINVLTGELL-PTSGEVYTHEN--------CRIAYIKQH--AFAHI 749
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 49/89 (55%), Gaps = 8/89 (8%)
Query: 262 LTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 321
LT+++ E+ + LGL+ ++ S +RG+SGG++ ++ + P L+ LDE
Sbjct: 875 LTRKEIEEHC----SXLGLD---PEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDE 927
Query: 322 PTSGLDSTTALRIVQMLQDIAEAGKTVVT 350
PT+ LD + + + L++ E G ++T
Sbjct: 928 PTNYLDRDSLGALSKALKEF-EGGVIIIT 955
Score = 36.2 bits (82), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 36/178 (20%), Positives = 68/178 (38%), Gaps = 50/178 (28%)
Query: 187 ALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTV 246
+ GP+G GK+TL ++ ++ GF TQ++
Sbjct: 465 GICGPNGCGKSTLXRAIANGQVD----------------------GFPTQEE-------- 494
Query: 247 KETLTYAALLRLPNTLTKQQKEKRAIDVINELGL---ERCQDTMIGGSF--------VRG 295
+ + + + + +D + E G+ E +D +I F +
Sbjct: 495 ------CRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEXIAXPISA 548
Query: 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIH 353
+SGG + ++ + ++ N +L LDEPT+ LD+ +V L G T +T H
Sbjct: 549 LSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---CGITSITISH 603
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 11/59 (18%)
Query: 186 LALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHL 244
+A++GP+G+GK+TL+N+L+G L+ PT G T+ + +I ++ Q F H+
Sbjct: 696 IAVIGPNGAGKSTLINVLTGELL-PTSGEVYTHEN--------CRIAYIKQH--AFAHI 743
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 49/89 (55%), Gaps = 8/89 (8%)
Query: 262 LTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 321
LT+++ E+ + LGL+ ++ S +RG+SGG++ ++ + P L+ LDE
Sbjct: 869 LTRKEIEEHC----SXLGLD---PEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDE 921
Query: 322 PTSGLDSTTALRIVQMLQDIAEAGKTVVT 350
PT+ LD + + + L++ E G ++T
Sbjct: 922 PTNYLDRDSLGALSKALKEF-EGGVIIIT 949
Score = 35.8 bits (81), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 36/178 (20%), Positives = 68/178 (38%), Gaps = 50/178 (28%)
Query: 187 ALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTV 246
+ GP+G GK+TL ++ ++ GF TQ++
Sbjct: 459 GICGPNGCGKSTLXRAIANGQVD----------------------GFPTQEE-------- 488
Query: 247 KETLTYAALLRLPNTLTKQQKEKRAIDVINELGL---ERCQDTMIGGSF--------VRG 295
+ + + + + +D + E G+ E +D +I F +
Sbjct: 489 ------CRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEXIAXPISA 542
Query: 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIH 353
+SGG + ++ + ++ N +L LDEPT+ LD+ +V L G T +T H
Sbjct: 543 LSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---CGITSITISH 597
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 11/59 (18%)
Query: 186 LALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHL 244
+A++GP+G+GK+TL+N+L+G L+ PT G T+ + +I ++ Q F H+
Sbjct: 702 IAVIGPNGAGKSTLINVLTGELL-PTSGEVYTHEN--------CRIAYIKQH--AFAHI 749
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 68/168 (40%), Gaps = 30/168 (17%)
Query: 187 ALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTV 246
+ GP+G GK+TL+ ++ ++ GF TQ++ ++
Sbjct: 465 GICGPNGCGKSTLMRAIANGQVD----------------------GFPTQEECRTVYVEH 502
Query: 247 KETLTYAALLRLPNTLTKQQKEKRAI-DVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305
T++ L K AI D + E G D MI + +SGG + ++
Sbjct: 503 DIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGF---TDEMIAMP-ISALSGGWKMKLA 558
Query: 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIH 353
+ ++ N +L LDEPT+ LD+ +V L G T +T H
Sbjct: 559 LARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---CGITSITISH 603
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 287 MIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGK 346
++ S +RG+SGG++ ++ + P L+ LDEPT+ LD + + + L++ E G
Sbjct: 893 IVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF-EGGV 951
Query: 347 TVVT 350
++T
Sbjct: 952 IIIT 955
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 296 VSGGERKRVCIGNEI--IINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIH 353
+SGGE +R+ + +I + L LDEP+ GL R++ L+ + + G T++ H
Sbjct: 203 LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEH 262
Query: 354 QPSSRLFHKFDKLILLGKGSLLYFGKASEA 383
+ L D LI +G G+ ++ G+ A
Sbjct: 263 DEDTML--AADYLIDIGPGAGIHGGEVVAA 290
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 267 KEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINP---SLLFLDEPT 323
K KR ++ + ++GL M G +SGGE +RV + E+ +L LDEPT
Sbjct: 519 KIKRKLETLYDVGL----GYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPT 574
Query: 324 SGLDSTTALRIVQMLQDIAEAGKTVVTTIHQ 354
+GL R++ +L + + G TV+ H
Sbjct: 575 TGLHVDDIARLLDVLHRLVDNGDTVLVIEHN 605
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 296 VSGGERKRVCIGNEI--IINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIH 353
+SGGE +R+ + +I + L LDEP+ GL R++ L+ + + G T++ H
Sbjct: 505 LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEH 564
Query: 354 QPSSRLFHKFDKLILLGKGSLLYFGKASEA 383
+ L D LI +G G+ ++ G+ A
Sbjct: 565 DEDTML--AADYLIDIGPGAGIHGGEVVAA 592
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 267 KEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINP---SLLFLDEPT 323
K KR ++ + ++GL M G +SGGE +RV + E+ +L LDEPT
Sbjct: 821 KIKRKLETLYDVGL----GYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPT 876
Query: 324 SGLDSTTALRIVQMLQDIAEAGKTVVTTIHQ 354
+GL R++ +L + + G TV+ H
Sbjct: 877 TGLHVDDIARLLDVLHRLVDNGDTVLVIEHN 907
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 4/90 (4%)
Query: 296 VSGGERKRVCIGNEI--IINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIH 353
+SGGE +R+ + +I + L LDEP+ GL R++ L+ + G T++ H
Sbjct: 505 LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSXRDLGNTLIVVEH 564
Query: 354 QPSSRLFHKFDKLILLGKGSLLYFGKASEA 383
+ L D LI +G G+ ++ G+ A
Sbjct: 565 DEDTXL--AADYLIDIGPGAGIHGGEVVAA 592
Score = 35.8 bits (81), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 296 VSGGERKRVCIGNEIIINP---SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTI 352
+SGGE +RV + E+ +L LDEPT+GL R++ +L + + G TV+
Sbjct: 846 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE 905
Query: 353 HQ 354
H
Sbjct: 906 HN 907
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 296 VSGGERKRVCIGNEI---IINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTI 352
+SGGE +RV + +E+ ++ LDEPT+GL +++ ++ + + G TV+
Sbjct: 864 LSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIE 923
Query: 353 HQ 354
H
Sbjct: 924 HN 925
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Query: 296 VSGGERKRVCIGNEII--INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIH 353
+SGGE +R+ + +I + L LDEP+ GL R+++ L + + G T++ H
Sbjct: 522 LSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEH 581
Query: 354 QPSSRLFHKFDKLILLGKGSLLYFGKASEAMAY 386
+ D ++ +G G+ + G+ + Y
Sbjct: 582 DEDT--IEHADWIVDIGPGAGEHGGRIVHSGPY 612
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 90/216 (41%), Gaps = 45/216 (20%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228
E+ L I VN GE + ++GP+GSGKTTLL +SG L PYS ++
Sbjct: 17 ERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL--------------PYSGNI- 60
Query: 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLP---------NTLTKQQKEKRAIDVINELG 279
F+ +V ++ + Y+ LP N + +E + +D +L
Sbjct: 61 ----FINGMEV----RKIRNYIRYST--NLPEAYEIGVTVNDIVYLYEELKGLD--RDLF 108
Query: 280 LERCQDTMIGGSFVR----GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIV 335
LE + +G +R +S G+ V + P ++ LDEP +D+ I
Sbjct: 109 LEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVIS 168
Query: 336 QMLQDIAEAGKTVVTTIHQPSS-RLFHKFDKLILLG 370
+ I E GK + H+ L+ ++ L+G
Sbjct: 169 RY---IKEYGKEGILVTHELDMLNLYKEYKAYFLVG 201
>pdb|3QF7|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QF7|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 15/86 (17%)
Query: 274 VINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINP------SLLFLDEPTSGLD 327
+I + G+ER RG+SGGER + I + + F+DE S LD
Sbjct: 267 IIKDWGIERP---------ARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLD 317
Query: 328 STTALRIVQMLQDIAEAGKTVVTTIH 353
+ +I +L+++ K +V H
Sbjct: 318 TENKEKIASVLKELERLNKVIVFITH 343
>pdb|3QG5|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QG5|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 23/90 (25%)
Query: 274 VINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSL----------LFLDEPT 323
+I + G+ER RG+SGGER + I + SL F+DE
Sbjct: 267 IIKDWGIERP---------ARGLSGGERALISIS----LAXSLAEVASGRLDAFFIDEGF 313
Query: 324 SGLDSTTALRIVQMLQDIAEAGKTVVTTIH 353
S LD+ +I +L+++ K +V H
Sbjct: 314 SSLDTENKEKIASVLKELERLNKVIVFITH 343
>pdb|3C8U|A Chain A, Crystal Structure Of Putative Fructose Transport System
Kinase (Yp_612366.1) From Silicibacter Sp. Tm1040 At
1.95 A Resolution
Length = 208
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 18/113 (15%)
Query: 182 PG-EVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND--HPYSKSLKSKIGFVTQDD 238
PG +++AL G GSGK+TL N L+ L + + D H ++ L+ +
Sbjct: 20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPXDGFHLDNRLLEPR-------- 71
Query: 239 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGS 291
L P ET + RL + L Q++ VI L +R +D I G+
Sbjct: 72 GLLPRKGAPETFDFEGFQRLCHALKHQER------VIYPL-FDRARDIAIAGA 117
>pdb|1T9H|A Chain A, The Crystal Structure Of Yloq, A Circularly Permuted
Gtpase
Length = 307
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 142 TEPTLPIYLK-FTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLL 200
TE T+ Y + + ++ Y V L TSS+++D L I + G SG GK++LL
Sbjct: 135 TEDTIQAYAEDYRNIGYDVYL---TSSKDQDSLADIIPHFQ-DKTTVFAGQSGVGKSSLL 190
Query: 201 NLLSGRL 207
N +S L
Sbjct: 191 NAISPEL 197
>pdb|3H09|A Chain A, The Structure Of Haemophilus Influenzae Iga1 Protease
pdb|3H09|B Chain B, The Structure Of Haemophilus Influenzae Iga1 Protease
Length = 989
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 6/36 (16%)
Query: 345 GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380
GKTV +H P S D+L +GKG+L+ GK
Sbjct: 412 GKTVTWKVHNPKS------DRLAKIGKGTLIVEGKG 441
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,169,959
Number of Sequences: 62578
Number of extensions: 627401
Number of successful extensions: 2009
Number of sequences better than 100.0: 118
Number of HSP's better than 100.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1728
Number of HSP's gapped (non-prelim): 171
length of query: 640
length of database: 14,973,337
effective HSP length: 105
effective length of query: 535
effective length of database: 8,402,647
effective search space: 4495416145
effective search space used: 4495416145
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)