Query 006571
Match_columns 640
No_of_seqs 544 out of 3382
Neff 6.8
Searched_HMMs 46136
Date Thu Mar 28 11:21:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006571.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006571hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03211 ABC transporter G-25; 100.0 9E-86 2E-90 756.8 57.7 472 147-640 37-536 (659)
2 KOG0061 Transporter, ABC super 100.0 6.9E-86 1.5E-90 750.9 49.1 461 147-639 23-486 (613)
3 TIGR00955 3a01204 The Eye Pigm 100.0 1.5E-80 3.2E-85 712.0 51.9 467 149-640 17-490 (617)
4 PLN03140 ABC transporter G fam 100.0 2.6E-78 5.6E-83 740.5 54.3 466 145-639 863-1344(1470)
5 TIGR00956 3a01205 Pleiotropic 100.0 7.6E-78 1.6E-82 738.2 46.7 452 169-640 73-550 (1394)
6 TIGR00956 3a01205 Pleiotropic 100.0 4.6E-76 9.9E-81 722.5 52.5 458 149-639 759-1233(1394)
7 KOG0065 Pleiotropic drug resis 100.0 5.5E-78 1.2E-82 698.9 30.2 454 150-637 788-1250(1391)
8 PLN03140 ABC transporter G fam 100.0 3.9E-76 8.4E-81 721.4 47.5 453 169-640 177-667 (1470)
9 KOG0065 Pleiotropic drug resis 100.0 7.5E-68 1.6E-72 614.5 33.0 453 169-640 127-589 (1391)
10 KOG0058 Peptide exporter, ABC 100.0 5.7E-63 1.2E-67 548.2 9.3 356 9-385 314-691 (716)
11 COG1126 GlnQ ABC-type polar am 100.0 5.7E-55 1.2E-59 424.2 24.6 218 149-384 2-224 (240)
12 KOG0055 Multidrug/pheromone ex 100.0 3.5E-54 7.6E-59 501.5 15.6 361 8-385 196-576 (1228)
13 COG1125 OpuBA ABC-type proline 100.0 1E-51 2.2E-56 408.8 22.1 233 149-411 1-239 (309)
14 COG1135 AbcC ABC-type metal io 100.0 3.8E-51 8.3E-56 415.7 22.9 222 149-384 1-230 (339)
15 KOG0055 Multidrug/pheromone ex 100.0 1E-52 2.3E-57 489.2 12.4 354 9-385 834-1213(1228)
16 COG2274 SunT ABC-type bacterio 100.0 4.4E-52 9.5E-57 476.5 14.1 362 10-386 320-697 (709)
17 COG1127 Ttg2A ABC-type transpo 100.0 5.4E-50 1.2E-54 394.9 22.8 221 148-385 7-235 (263)
18 COG1131 CcmA ABC-type multidru 100.0 1.4E-49 3.1E-54 416.6 26.6 222 149-389 4-230 (293)
19 COG1120 FepC ABC-type cobalami 100.0 8.3E-50 1.8E-54 405.0 21.7 220 149-384 2-227 (258)
20 COG3842 PotA ABC-type spermidi 100.0 1.8E-49 3.9E-54 418.9 22.5 233 148-406 4-239 (352)
21 COG1116 TauB ABC-type nitrate/ 100.0 3.5E-49 7.7E-54 393.9 23.4 204 149-372 3-207 (248)
22 COG3839 MalK ABC-type sugar tr 100.0 3.5E-49 7.6E-54 414.6 24.3 218 149-385 3-223 (338)
23 COG1136 SalX ABC-type antimicr 100.0 1.1E-48 2.3E-53 389.8 25.2 210 150-374 2-220 (226)
24 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 1.9E-48 4.2E-53 393.2 24.1 219 148-385 3-227 (254)
25 COG3638 ABC-type phosphate/pho 100.0 1.2E-48 2.5E-53 384.5 20.1 223 149-386 3-238 (258)
26 COG1132 MdlB ABC-type multidru 100.0 1.7E-49 3.6E-54 452.3 13.9 356 8-385 177-552 (567)
27 COG4555 NatA ABC-type Na+ tran 100.0 2.2E-48 4.8E-53 373.3 18.0 220 149-386 1-223 (245)
28 PRK11174 cysteine/glutathione 100.0 9.7E-49 2.1E-53 447.8 17.0 215 149-385 349-572 (588)
29 COG1118 CysA ABC-type sulfate/ 100.0 6.6E-48 1.4E-52 391.2 20.7 220 149-385 2-227 (345)
30 COG2884 FtsE Predicted ATPase 100.0 7.6E-48 1.7E-52 366.8 19.8 213 149-379 1-220 (223)
31 PRK13537 nodulation ABC transp 100.0 6.1E-47 1.3E-51 399.5 28.8 219 148-385 6-227 (306)
32 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 6.4E-49 1.4E-53 456.8 14.5 345 10-385 302-673 (686)
33 TIGR00958 3a01208 Conjugate Tr 100.0 5.4E-49 1.2E-53 458.5 12.6 349 9-385 327-702 (711)
34 TIGR02314 ABC_MetN D-methionin 100.0 9.5E-47 2.1E-51 402.6 28.7 221 149-384 1-229 (343)
35 COG1117 PstB ABC-type phosphat 100.0 1.9E-47 4.1E-52 370.1 19.5 233 148-404 6-248 (253)
36 PTZ00265 multidrug resistance 100.0 1.1E-48 2.4E-53 481.6 13.1 354 15-385 1015-1452(1466)
37 cd03261 ABC_Org_Solvent_Resist 100.0 1.9E-46 4.1E-51 380.9 26.4 217 150-384 1-225 (235)
38 TIGR03265 PhnT2 putative 2-ami 100.0 2.6E-46 5.7E-51 401.4 28.3 218 149-385 4-224 (353)
39 PRK11650 ugpC glycerol-3-phosp 100.0 2.9E-46 6.3E-51 401.5 28.4 218 149-384 3-223 (356)
40 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 4.3E-48 9.3E-53 451.5 14.7 354 10-385 320-700 (710)
41 PRK11432 fbpC ferric transport 100.0 3.9E-46 8.6E-51 399.5 28.4 217 149-384 6-225 (351)
42 TIGR03375 type_I_sec_LssB type 100.0 4.7E-48 1E-52 450.1 14.3 353 10-386 312-689 (694)
43 TIGR01193 bacteriocin_ABC ABC- 100.0 3.7E-48 8E-53 451.9 12.7 352 9-385 321-697 (708)
44 PRK11176 lipid transporter ATP 100.0 6.2E-48 1.3E-52 440.6 13.8 357 9-385 191-567 (582)
45 PRK13536 nodulation factor exp 100.0 1E-45 2.2E-50 394.9 28.9 220 148-386 40-262 (340)
46 TIGR03258 PhnT 2-aminoethylpho 100.0 8E-46 1.7E-50 398.4 28.2 219 148-385 4-228 (362)
47 KOG0057 Mitochondrial Fe/S clu 100.0 4.2E-48 9.1E-53 416.9 9.8 217 147-385 349-574 (591)
48 COG1122 CbiO ABC-type cobalt t 100.0 5.8E-46 1.3E-50 375.8 24.3 218 149-385 3-228 (235)
49 COG1124 DppF ABC-type dipeptid 100.0 3.6E-46 7.8E-51 369.4 22.2 221 149-385 3-231 (252)
50 PRK11160 cysteine/glutathione 100.0 1.5E-47 3.2E-52 436.6 13.7 349 9-385 187-562 (574)
51 PRK10851 sulfate/thiosulfate t 100.0 1.7E-45 3.8E-50 395.0 28.6 220 149-384 2-225 (353)
52 PRK09452 potA putrescine/sperm 100.0 2E-45 4.3E-50 396.9 28.7 218 148-384 13-233 (375)
53 TIGR01288 nodI ATP-binding ABC 100.0 1.8E-45 3.9E-50 387.9 27.8 218 149-385 4-224 (303)
54 cd03265 ABC_DrrA DrrA is the A 100.0 2.2E-45 4.8E-50 369.4 26.3 215 150-383 1-219 (220)
55 cd03219 ABC_Mj1267_LivG_branch 100.0 2E-45 4.4E-50 373.2 26.0 219 150-384 1-231 (236)
56 PRK11153 metN DL-methionine tr 100.0 3.2E-45 6.9E-50 392.2 28.3 221 149-384 1-229 (343)
57 TIGR00960 3a0501s02 Type II (G 100.0 1.6E-45 3.6E-50 369.2 24.4 209 149-374 1-216 (216)
58 PRK11607 potG putrescine trans 100.0 4.6E-45 9.9E-50 394.6 29.6 219 148-385 18-239 (377)
59 cd03296 ABC_CysA_sulfate_impor 100.0 3.7E-45 8E-50 372.5 26.8 220 149-384 2-225 (239)
60 cd03259 ABC_Carb_Solutes_like 100.0 2.6E-45 5.7E-50 367.0 25.2 210 150-378 1-213 (213)
61 PRK13643 cbiO cobalt transport 100.0 5.9E-45 1.3E-49 381.3 28.6 235 149-398 1-249 (288)
62 cd03218 ABC_YhbG The ABC trans 100.0 3.6E-45 7.9E-50 370.5 25.8 216 150-384 1-221 (232)
63 TIGR01842 type_I_sec_PrtD type 100.0 6.6E-47 1.4E-51 428.9 14.5 355 11-385 169-542 (544)
64 PRK11000 maltose/maltodextrin 100.0 5E-45 1.1E-49 394.0 28.4 217 149-384 3-222 (369)
65 cd03258 ABC_MetN_methionine_tr 100.0 4E-45 8.6E-50 370.6 25.8 220 150-384 2-229 (233)
66 cd03269 ABC_putative_ATPase Th 100.0 3.2E-45 7E-50 365.5 24.6 210 150-378 1-210 (210)
67 TIGR01846 type_I_sec_HlyB type 100.0 7.8E-47 1.7E-51 439.8 15.0 351 10-385 305-680 (694)
68 cd03293 ABC_NrtD_SsuB_transpor 100.0 5.1E-45 1.1E-49 366.8 25.8 216 150-381 1-219 (220)
69 COG3840 ThiQ ABC-type thiamine 100.0 1E-45 2.2E-50 349.7 19.1 214 150-384 2-218 (231)
70 cd03263 ABC_subfamily_A The AB 100.0 4.9E-45 1.1E-49 366.6 25.0 216 150-383 1-219 (220)
71 cd03260 ABC_PstB_phosphate_tra 100.0 3.5E-45 7.5E-50 369.6 23.7 217 150-382 1-226 (227)
72 PRK13637 cbiO cobalt transport 100.0 1.5E-44 3.2E-49 378.2 29.0 232 149-395 2-247 (287)
73 cd03256 ABC_PhnC_transporter A 100.0 5.4E-45 1.2E-49 371.1 24.6 220 150-384 1-233 (241)
74 cd03266 ABC_NatA_sodium_export 100.0 8.2E-45 1.8E-49 364.5 25.6 214 150-378 2-218 (218)
75 PRK10789 putative multidrug tr 100.0 1.5E-46 3.3E-51 428.1 14.5 348 10-385 164-538 (569)
76 cd03301 ABC_MalK_N The N-termi 100.0 7.8E-45 1.7E-49 363.4 25.1 210 150-378 1-213 (213)
77 TIGR03522 GldA_ABC_ATP gliding 100.0 1.2E-44 2.6E-49 381.3 27.7 217 149-385 2-221 (301)
78 cd03295 ABC_OpuCA_Osmoprotecti 100.0 1.1E-44 2.3E-49 369.8 26.2 216 150-384 1-224 (242)
79 PRK09493 glnQ glutamine ABC tr 100.0 1.3E-44 2.8E-49 368.6 26.7 217 150-384 2-224 (240)
80 PRK10790 putative multidrug tr 100.0 2.7E-46 5.9E-51 427.9 16.1 344 10-385 192-563 (592)
81 TIGR01188 drrA daunorubicin re 100.0 8.3E-45 1.8E-49 382.7 25.8 207 169-386 5-214 (302)
82 PRK11264 putative amino-acid A 100.0 1.6E-44 3.5E-49 369.9 27.2 218 149-384 3-232 (250)
83 cd03224 ABC_TM1139_LivF_branch 100.0 7.6E-45 1.6E-49 365.5 24.4 214 150-384 1-220 (222)
84 TIGR02315 ABC_phnC phosphonate 100.0 6.7E-45 1.5E-49 371.0 24.1 219 150-383 2-233 (243)
85 PRK13634 cbiO cobalt transport 100.0 2.2E-44 4.7E-49 377.4 28.4 231 150-395 3-248 (290)
86 PRK09536 btuD corrinoid ABC tr 100.0 1.1E-44 2.3E-49 393.7 26.6 220 149-384 3-227 (402)
87 PRK13631 cbiO cobalt transport 100.0 3.4E-44 7.4E-49 380.5 29.5 233 148-395 20-278 (320)
88 PRK11831 putative ABC transpor 100.0 2.1E-44 4.6E-49 373.6 27.3 218 149-384 7-232 (269)
89 PRK13647 cbiO cobalt transport 100.0 3.2E-44 6.9E-49 373.3 28.7 217 149-383 4-225 (274)
90 TIGR02203 MsbA_lipidA lipid A 100.0 2.4E-46 5.2E-51 426.4 13.4 354 11-385 182-556 (571)
91 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 1.3E-44 2.9E-49 363.0 23.5 209 150-374 1-218 (218)
92 cd03268 ABC_BcrA_bacitracin_re 100.0 1.7E-44 3.6E-49 359.8 23.6 206 150-378 1-208 (208)
93 PRK13650 cbiO cobalt transport 100.0 5.5E-44 1.2E-48 372.4 28.2 228 149-393 4-240 (279)
94 TIGR00972 3a0107s01c2 phosphat 100.0 4.7E-44 1E-48 366.1 27.2 216 149-384 1-231 (247)
95 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 7E-44 1.5E-48 362.4 27.9 216 150-385 2-221 (236)
96 COG1137 YhbG ABC-type (unclass 100.0 8.4E-46 1.8E-50 355.2 12.9 219 149-384 4-227 (243)
97 PRK10895 lipopolysaccharide AB 100.0 3.4E-44 7.4E-49 365.7 25.6 218 149-384 3-225 (241)
98 PRK13657 cyclic beta-1,2-gluca 100.0 6.7E-46 1.4E-50 424.4 14.5 355 10-385 183-558 (588)
99 PRK10619 histidine/lysine/argi 100.0 6.7E-44 1.5E-48 367.2 27.5 218 149-384 5-240 (257)
100 PRK15079 oligopeptide ABC tran 100.0 5.8E-44 1.3E-48 380.3 27.8 228 148-384 7-250 (331)
101 TIGR01186 proV glycine betaine 100.0 3.7E-44 8.1E-49 384.9 26.5 207 168-385 4-219 (363)
102 TIGR02673 FtsE cell division A 100.0 3.8E-44 8.2E-49 358.7 24.7 206 150-373 2-214 (214)
103 PRK13651 cobalt transporter AT 100.0 8.8E-44 1.9E-48 375.1 28.6 221 149-384 2-253 (305)
104 PRK11629 lolD lipoprotein tran 100.0 8.5E-44 1.8E-48 361.1 27.3 216 149-380 5-229 (233)
105 PRK13636 cbiO cobalt transport 100.0 7.5E-44 1.6E-48 372.1 27.6 218 149-385 5-231 (283)
106 cd03234 ABCG_White The White s 100.0 7.5E-44 1.6E-48 359.9 26.5 221 149-378 3-226 (226)
107 PRK11614 livF leucine/isoleuci 100.0 4.7E-44 1E-48 363.8 25.1 215 149-384 5-225 (237)
108 PRK14247 phosphate ABC transpo 100.0 1E-43 2.2E-48 364.2 27.7 224 149-384 3-233 (250)
109 cd03264 ABC_drug_resistance_li 100.0 3.6E-44 7.7E-49 358.3 23.5 208 150-378 1-211 (211)
110 PRK13646 cbiO cobalt transport 100.0 8.6E-44 1.9E-48 372.2 27.4 222 149-385 2-235 (286)
111 KOG0056 Heavy metal exporter H 100.0 1.6E-46 3.5E-51 396.7 6.8 348 17-385 393-761 (790)
112 PRK11124 artP arginine transpo 100.0 8.9E-44 1.9E-48 362.9 26.8 216 149-383 2-228 (242)
113 cd03292 ABC_FtsE_transporter F 100.0 5.1E-44 1.1E-48 357.6 24.1 207 150-374 1-214 (214)
114 TIGR02868 CydC thiol reductant 100.0 6.4E-46 1.4E-50 419.4 11.8 324 11-355 182-529 (529)
115 PRK14273 phosphate ABC transpo 100.0 1.2E-43 2.5E-48 364.7 27.3 219 148-384 6-237 (254)
116 TIGR03005 ectoine_ehuA ectoine 100.0 8.7E-44 1.9E-48 365.2 26.3 217 150-384 1-235 (252)
117 TIGR01978 sufC FeS assembly AT 100.0 9.4E-44 2E-48 362.4 26.4 221 150-384 1-233 (243)
118 PRK13641 cbiO cobalt transport 100.0 1E-43 2.3E-48 371.7 27.3 221 149-384 2-233 (287)
119 PRK14268 phosphate ABC transpo 100.0 1.3E-43 2.9E-48 365.3 27.5 222 148-384 11-241 (258)
120 PRK14242 phosphate transporter 100.0 1.3E-43 2.9E-48 363.9 27.1 224 147-384 4-236 (253)
121 PRK13638 cbiO cobalt transport 100.0 1.7E-43 3.8E-48 367.0 28.2 217 149-384 1-224 (271)
122 PRK14267 phosphate ABC transpo 100.0 1.7E-43 3.8E-48 363.1 27.8 224 149-384 4-236 (253)
123 COG4152 ABC-type uncharacteriz 100.0 1.6E-44 3.5E-49 355.6 19.1 221 149-388 2-222 (300)
124 PRK11022 dppD dipeptide transp 100.0 1.8E-43 4E-48 376.0 28.4 227 149-384 3-242 (326)
125 PRK13635 cbiO cobalt transport 100.0 2E-43 4.3E-48 368.3 27.9 219 149-385 5-229 (279)
126 PRK11248 tauB taurine transpor 100.0 1.6E-43 3.5E-48 364.2 26.6 213 149-381 1-216 (255)
127 cd03294 ABC_Pro_Gly_Bertaine T 100.0 6.8E-44 1.5E-48 369.8 23.9 215 151-384 26-249 (269)
128 cd03257 ABC_NikE_OppD_transpor 100.0 1.3E-43 2.8E-48 357.8 25.3 215 150-378 2-228 (228)
129 PRK09473 oppD oligopeptide tra 100.0 2.2E-43 4.8E-48 375.8 28.4 227 148-384 11-250 (330)
130 PRK13548 hmuV hemin importer A 100.0 1.7E-43 3.7E-48 364.6 26.3 217 149-384 2-229 (258)
131 COG0411 LivG ABC-type branched 100.0 2.8E-44 6.1E-49 356.2 19.6 220 149-384 4-238 (250)
132 cd03262 ABC_HisP_GlnQ_permease 100.0 1E-43 2.2E-48 355.1 23.9 207 150-374 1-213 (213)
133 TIGR03411 urea_trans_UrtD urea 100.0 2.5E-43 5.5E-48 359.4 27.2 219 149-384 2-230 (242)
134 cd03226 ABC_cobalt_CbiO_domain 100.0 6.6E-44 1.4E-48 355.0 22.2 202 151-375 1-205 (205)
135 PRK10908 cell division protein 100.0 1.8E-43 3.9E-48 356.1 25.6 208 150-375 2-216 (222)
136 PRK13649 cbiO cobalt transport 100.0 3.2E-43 6.9E-48 366.7 28.3 221 149-384 2-233 (280)
137 PRK11308 dppF dipeptide transp 100.0 2.7E-43 5.9E-48 374.7 28.2 227 149-385 5-244 (327)
138 PRK13644 cbiO cobalt transport 100.0 2.2E-43 4.8E-48 367.0 26.8 217 149-384 1-223 (274)
139 TIGR01192 chvA glucan exporter 100.0 3.2E-45 7E-50 418.3 14.1 354 11-385 184-558 (585)
140 TIGR02211 LolD_lipo_ex lipopro 100.0 1.8E-43 3.9E-48 355.5 25.1 210 150-375 2-220 (221)
141 TIGR02204 MsbA_rel ABC transpo 100.0 4.3E-45 9.4E-50 416.6 15.1 353 9-385 184-563 (576)
142 PRK14245 phosphate ABC transpo 100.0 3.2E-43 7E-48 360.6 27.4 222 149-384 3-233 (250)
143 PRK11300 livG leucine/isoleuci 100.0 3E-43 6.4E-48 361.6 27.0 220 149-384 5-242 (255)
144 PRK10070 glycine betaine trans 100.0 2.9E-43 6.3E-48 382.2 28.2 204 170-384 41-253 (400)
145 PRK13648 cbiO cobalt transport 100.0 5.3E-43 1.1E-47 363.1 28.9 218 149-384 7-230 (269)
146 PRK15093 antimicrobial peptide 100.0 3.3E-43 7.2E-48 374.8 28.0 229 149-384 3-247 (330)
147 PRK13652 cbiO cobalt transport 100.0 3.4E-43 7.4E-48 366.0 27.4 218 149-385 3-227 (277)
148 PRK11231 fecE iron-dicitrate t 100.0 1.8E-43 3.9E-48 363.7 24.9 220 149-384 2-226 (255)
149 PRK11247 ssuB aliphatic sulfon 100.0 1.9E-43 4.2E-48 364.0 25.1 208 148-381 11-219 (257)
150 PRK10744 pstB phosphate transp 100.0 4E-43 8.7E-48 362.1 27.3 224 147-384 11-243 (260)
151 PRK14269 phosphate ABC transpo 100.0 3.5E-43 7.6E-48 359.6 26.6 223 149-384 2-229 (246)
152 PRK09984 phosphonate/organopho 100.0 2.9E-43 6.2E-48 363.5 26.2 221 149-383 4-240 (262)
153 COG4988 CydD ABC-type transpor 100.0 4.7E-44 1E-48 391.0 21.3 216 147-385 318-543 (559)
154 TIGR02769 nickel_nikE nickel i 100.0 3.1E-43 6.7E-48 364.0 26.4 226 149-384 2-239 (265)
155 PRK13639 cbiO cobalt transport 100.0 7.2E-43 1.6E-47 363.2 29.3 216 150-384 2-225 (275)
156 PRK14235 phosphate transporter 100.0 5.1E-43 1.1E-47 362.8 27.3 223 149-384 19-250 (267)
157 cd03225 ABC_cobalt_CbiO_domain 100.0 1.7E-43 3.7E-48 353.2 22.9 206 151-373 1-211 (211)
158 TIGR03410 urea_trans_UrtE urea 100.0 2.4E-43 5.3E-48 356.8 24.2 212 150-383 1-219 (230)
159 cd03235 ABC_Metallic_Cations A 100.0 1.1E-43 2.4E-48 355.3 21.4 210 151-378 1-213 (213)
160 PRK13632 cbiO cobalt transport 100.0 4.7E-43 1E-47 363.9 26.7 219 148-384 6-230 (271)
161 PRK13633 cobalt transporter AT 100.0 6.4E-43 1.4E-47 364.6 27.8 222 149-385 4-233 (280)
162 PRK14256 phosphate ABC transpo 100.0 7.5E-43 1.6E-47 358.3 27.8 223 149-384 4-235 (252)
163 COG0410 LivF ABC-type branched 100.0 2E-43 4.3E-48 347.6 22.4 216 149-384 3-225 (237)
164 PRK13640 cbiO cobalt transport 100.0 7.9E-43 1.7E-47 364.2 28.3 220 149-385 5-232 (282)
165 PRK10575 iron-hydroxamate tran 100.0 3.9E-43 8.4E-48 363.3 25.4 220 149-384 11-236 (265)
166 TIGR03740 galliderm_ABC gallid 100.0 4.6E-43 1E-47 353.3 25.3 210 150-382 1-210 (223)
167 TIGR03873 F420-0_ABC_ATP propo 100.0 4.3E-43 9.2E-48 361.0 25.5 219 150-384 2-225 (256)
168 PRK10253 iron-enterobactin tra 100.0 3.8E-43 8.3E-48 363.3 25.2 220 149-384 7-232 (265)
169 PRK14274 phosphate ABC transpo 100.0 7.4E-43 1.6E-47 359.9 27.2 222 149-384 12-242 (259)
170 PRK14241 phosphate transporter 100.0 7.5E-43 1.6E-47 359.6 27.2 223 149-384 4-241 (258)
171 COG4618 ArpD ABC-type protease 100.0 5E-45 1.1E-49 389.7 11.2 360 14-388 190-563 (580)
172 PRK14239 phosphate transporter 100.0 8.4E-43 1.8E-47 357.7 27.3 222 149-384 5-235 (252)
173 PRK14237 phosphate transporter 100.0 1E-42 2.2E-47 360.6 28.1 224 147-384 18-250 (267)
174 TIGR00968 3a0106s01 sulfate AB 100.0 7.1E-43 1.5E-47 355.5 26.0 216 150-384 1-219 (237)
175 COG0444 DppD ABC-type dipeptid 100.0 3.9E-43 8.5E-48 361.6 24.1 226 150-384 2-242 (316)
176 PRK14250 phosphate ABC transpo 100.0 6.1E-43 1.3E-47 356.8 25.0 212 149-384 3-220 (241)
177 PRK10584 putative ABC transpor 100.0 9.9E-43 2.2E-47 351.9 26.1 214 148-377 5-227 (228)
178 PRK14240 phosphate transporter 100.0 1.3E-42 2.9E-47 355.9 27.3 222 149-384 3-233 (250)
179 cd03300 ABC_PotA_N PotA is an 100.0 1.1E-42 2.4E-47 352.9 26.4 216 150-384 1-219 (232)
180 COG4175 ProV ABC-type proline/ 100.0 1.7E-43 3.8E-48 359.3 20.3 226 148-384 3-253 (386)
181 PTZ00265 multidrug resistance 100.0 2.5E-44 5.4E-49 443.1 17.1 347 10-372 224-655 (1466)
182 PRK13645 cbiO cobalt transport 100.0 1E-42 2.2E-47 364.6 26.8 221 149-384 6-239 (289)
183 PRK13642 cbiO cobalt transport 100.0 1.8E-42 3.9E-47 360.6 27.9 219 149-384 4-228 (277)
184 COG4987 CydC ABC-type transpor 100.0 5.8E-44 1.3E-48 384.7 17.0 215 149-385 336-561 (573)
185 PRK14270 phosphate ABC transpo 100.0 1.8E-42 3.9E-47 355.3 27.4 223 148-384 3-234 (251)
186 cd03298 ABC_ThiQ_thiamine_tran 100.0 8.8E-43 1.9E-47 348.2 24.3 208 150-378 1-211 (211)
187 PRK14244 phosphate ABC transpo 100.0 1.5E-42 3.2E-47 355.9 26.3 223 149-384 5-236 (251)
188 TIGR03415 ABC_choXWV_ATP choli 100.0 1.1E-42 2.4E-47 375.3 26.4 206 168-384 35-253 (382)
189 PRK14272 phosphate ABC transpo 100.0 2.3E-42 4.9E-47 354.5 27.5 223 149-384 4-235 (252)
190 PRK10771 thiQ thiamine transpo 100.0 1.7E-42 3.6E-47 351.5 26.1 214 150-384 2-218 (232)
191 PRK14257 phosphate ABC transpo 100.0 2.3E-42 4.9E-47 367.8 28.3 224 148-384 79-312 (329)
192 PRK14262 phosphate ABC transpo 100.0 2.2E-42 4.7E-47 354.3 27.0 222 149-384 3-233 (250)
193 PRK14259 phosphate ABC transpo 100.0 1.7E-42 3.8E-47 359.3 26.5 222 148-385 12-253 (269)
194 TIGR02142 modC_ABC molybdenum 100.0 1.2E-42 2.6E-47 373.8 26.2 209 154-385 4-221 (354)
195 cd03299 ABC_ModC_like Archeal 100.0 2.3E-42 4.9E-47 351.4 26.6 215 150-384 1-218 (235)
196 PRK11144 modC molybdate transp 100.0 1.6E-42 3.4E-47 372.6 26.7 207 150-384 2-217 (352)
197 PRK13549 xylose transporter AT 100.0 8.7E-43 1.9E-47 392.0 25.8 220 149-383 5-230 (506)
198 PRK15112 antimicrobial peptide 100.0 2.2E-42 4.8E-47 358.1 26.7 226 149-384 4-238 (267)
199 PRK14236 phosphate transporter 100.0 3.8E-42 8.2E-47 357.3 27.9 223 148-384 24-255 (272)
200 PRK14248 phosphate ABC transpo 100.0 4.1E-42 8.8E-47 356.2 27.7 222 149-384 21-251 (268)
201 PRK14251 phosphate ABC transpo 100.0 3.8E-42 8.2E-47 352.8 27.0 222 149-384 4-234 (251)
202 PRK14253 phosphate ABC transpo 100.0 3.1E-42 6.8E-47 353.0 26.4 222 149-384 3-232 (249)
203 TIGR02857 CydD thiol reductant 100.0 1.9E-44 4.2E-49 407.4 11.0 332 10-369 171-529 (529)
204 TIGR01277 thiQ thiamine ABC tr 100.0 3E-42 6.6E-47 345.1 25.6 209 150-379 1-212 (213)
205 PRK14261 phosphate ABC transpo 100.0 4.2E-42 9.1E-47 352.9 27.1 222 149-384 6-236 (253)
206 cd03233 ABC_PDR_domain1 The pl 100.0 2.5E-42 5.3E-47 343.4 24.3 195 149-378 3-202 (202)
207 cd03232 ABC_PDR_domain2 The pl 100.0 2.4E-42 5.2E-47 340.7 24.0 189 149-378 3-192 (192)
208 PRK14249 phosphate ABC transpo 100.0 5.1E-42 1.1E-46 351.9 27.3 221 149-384 4-234 (251)
209 PRK13547 hmuV hemin importer A 100.0 2.3E-42 5E-47 358.8 24.9 220 150-384 2-243 (272)
210 PLN03130 ABC transporter C fam 100.0 6.9E-44 1.5E-48 442.9 15.7 217 148-385 1236-1461(1622)
211 PRK11701 phnK phosphonate C-P 100.0 6.5E-42 1.4E-46 352.7 27.4 218 149-384 6-240 (258)
212 cd03252 ABCC_Hemolysin The ABC 100.0 1.2E-42 2.7E-47 353.3 21.3 214 150-385 1-225 (237)
213 PRK10762 D-ribose transporter 100.0 2.8E-42 6E-47 387.5 25.8 219 149-383 4-228 (501)
214 PRK14238 phosphate transporter 100.0 8.7E-42 1.9E-46 354.4 27.4 222 149-384 24-254 (271)
215 PRK14271 phosphate ABC transpo 100.0 1E-41 2.3E-46 354.7 27.7 221 149-384 21-250 (276)
216 PLN03232 ABC transporter C fam 100.0 1.3E-43 2.8E-48 439.7 15.9 215 148-385 1233-1458(1495)
217 PRK09700 D-allose transporter 100.0 3.2E-42 6.8E-47 387.8 25.7 219 149-383 5-232 (510)
218 PRK14255 phosphate ABC transpo 100.0 1.4E-41 2.9E-46 348.9 28.1 222 149-384 5-235 (252)
219 PRK14260 phosphate ABC transpo 100.0 8.7E-42 1.9E-46 352.0 26.6 222 149-384 7-242 (259)
220 COG4559 ABC-type hemin transpo 100.0 1.7E-42 3.6E-47 335.2 19.7 216 149-384 1-229 (259)
221 PRK14275 phosphate ABC transpo 100.0 9.3E-42 2E-46 356.9 27.0 223 148-384 38-269 (286)
222 PRK14258 phosphate ABC transpo 100.0 1.2E-41 2.5E-46 351.5 27.4 222 149-384 7-244 (261)
223 PRK14254 phosphate ABC transpo 100.0 2.1E-41 4.5E-46 354.0 29.5 221 148-384 38-268 (285)
224 cd03297 ABC_ModC_molybdenum_tr 100.0 6.9E-42 1.5E-46 342.7 24.8 203 151-378 3-214 (214)
225 cd03267 ABC_NatA_like Similar 100.0 5.2E-42 1.1E-46 349.0 23.9 200 168-378 32-236 (236)
226 CHL00131 ycf16 sulfate ABC tra 100.0 1.7E-41 3.8E-46 347.9 27.9 221 149-383 7-239 (252)
227 PRK10418 nikD nickel transport 100.0 1.5E-41 3.2E-46 349.3 27.1 217 147-384 2-229 (254)
228 COG4598 HisP ABC-type histidin 100.0 5.1E-43 1.1E-47 330.4 14.2 218 149-384 6-240 (256)
229 PRK14265 phosphate ABC transpo 100.0 2.3E-41 4.9E-46 351.9 27.9 221 148-384 19-257 (274)
230 TIGR03608 L_ocin_972_ABC putat 100.0 7.9E-42 1.7E-46 339.7 23.2 198 152-369 1-206 (206)
231 PRK15439 autoinducer 2 ABC tra 100.0 1.1E-41 2.3E-46 383.4 27.0 213 148-383 10-227 (510)
232 PRK10419 nikE nickel transport 100.0 1.3E-41 2.9E-46 352.5 25.5 226 149-384 3-240 (268)
233 cd03213 ABCG_EPDR ABCG transpo 100.0 1.5E-41 3.1E-46 335.8 24.6 191 149-378 3-194 (194)
234 TIGR02982 heterocyst_DevA ABC 100.0 1.4E-41 3E-46 342.0 24.9 210 150-374 2-219 (220)
235 PRK14266 phosphate ABC transpo 100.0 2.5E-41 5.4E-46 346.5 27.0 222 149-384 3-233 (250)
236 PRK14263 phosphate ABC transpo 100.0 2.6E-41 5.7E-46 349.0 27.3 222 147-384 6-244 (261)
237 cd03251 ABCC_MsbA MsbA is an e 100.0 4.7E-42 1E-46 348.2 21.4 214 150-385 1-225 (234)
238 COG1123 ATPase components of v 100.0 9.4E-42 2E-46 374.3 24.6 228 148-384 279-518 (539)
239 COG5265 ATM1 ABC-type transpor 100.0 1E-43 2.2E-48 372.3 8.7 346 19-385 119-486 (497)
240 PRK14243 phosphate transporter 100.0 1.8E-41 3.9E-46 350.7 25.4 220 149-384 10-247 (264)
241 TIGR00957 MRP_assoc_pro multi 100.0 5.5E-43 1.2E-47 434.7 16.8 215 148-385 1283-1508(1522)
242 TIGR01184 ntrCD nitrate transp 100.0 8.4E-42 1.8E-46 346.2 22.4 201 173-383 1-202 (230)
243 COG1123 ATPase components of v 100.0 1.4E-41 3.1E-46 372.8 25.8 228 149-386 5-245 (539)
244 PRK09580 sufC cysteine desulfu 100.0 3.7E-41 7.9E-46 344.5 27.0 227 150-390 2-239 (248)
245 TIGR02323 CP_lyasePhnK phospho 100.0 3.7E-41 8E-46 345.8 26.7 218 149-384 3-237 (253)
246 PRK10247 putative ABC transpor 100.0 1.6E-41 3.6E-46 342.9 22.7 210 149-381 7-223 (225)
247 TIGR02633 xylG D-xylose ABC tr 100.0 2.6E-41 5.6E-46 379.5 26.5 219 150-382 2-227 (500)
248 cd03289 ABCC_CFTR2 The CFTR su 100.0 2.1E-41 4.5E-46 351.9 23.7 213 149-385 2-225 (275)
249 cd03254 ABCC_Glucan_exporter_l 100.0 1.1E-41 2.3E-46 344.5 20.9 214 149-385 2-226 (229)
250 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 1.1E-41 2.4E-46 346.5 20.8 218 150-386 1-227 (238)
251 PRK14264 phosphate ABC transpo 100.0 7.6E-41 1.6E-45 353.1 27.9 225 148-384 44-288 (305)
252 PRK11288 araG L-arabinose tran 100.0 3.5E-41 7.6E-46 378.6 26.8 216 149-380 4-224 (501)
253 COG4525 TauB ABC-type taurine 100.0 2.8E-41 6.1E-46 322.6 21.8 219 149-385 3-224 (259)
254 PTZ00243 ABC transporter; Prov 100.0 8.2E-43 1.8E-47 432.6 14.3 215 148-385 1307-1533(1560)
255 PRK15056 manganese/iron transp 100.0 4.5E-41 9.7E-46 349.2 25.0 220 149-384 6-229 (272)
256 PRK10261 glutathione transport 100.0 5E-41 1.1E-45 386.0 27.8 227 148-384 312-552 (623)
257 TIGR02770 nickel_nikD nickel i 100.0 4.3E-41 9.3E-46 340.8 24.0 206 172-384 1-214 (230)
258 cd03245 ABCC_bacteriocin_expor 100.0 2.2E-41 4.8E-46 340.1 21.6 209 149-378 2-220 (220)
259 PRK10982 galactose/methyl gala 100.0 3.8E-41 8.2E-46 377.4 25.4 216 152-383 1-221 (491)
260 PRK14246 phosphate ABC transpo 100.0 9.4E-41 2E-45 344.1 26.2 221 149-384 10-240 (257)
261 TIGR03269 met_CoM_red_A2 methy 100.0 6.1E-41 1.3E-45 378.2 27.0 221 150-387 1-260 (520)
262 PRK14252 phosphate ABC transpo 100.0 1.7E-40 3.8E-45 343.4 27.7 222 148-384 15-248 (265)
263 cd03217 ABC_FeS_Assembly ABC-t 100.0 6.1E-41 1.3E-45 332.8 23.0 190 150-388 1-196 (200)
264 COG4181 Predicted ABC-type tra 100.0 1.3E-41 2.8E-46 318.9 16.9 212 149-376 6-226 (228)
265 PRK13538 cytochrome c biogenes 100.0 9.6E-41 2.1E-45 332.2 24.0 199 149-369 1-202 (204)
266 cd03253 ABCC_ATM1_transporter 100.0 4.3E-41 9.2E-46 341.6 21.5 215 150-385 1-224 (236)
267 PRK03695 vitamin B12-transport 100.0 8.9E-41 1.9E-45 342.5 23.6 200 172-384 11-221 (248)
268 PRK15134 microcin C ABC transp 100.0 6.7E-41 1.4E-45 378.6 24.9 227 148-384 274-514 (529)
269 PRK10261 glutathione transport 100.0 8.1E-41 1.8E-45 384.3 26.0 225 149-384 12-257 (623)
270 cd03230 ABC_DR_subfamily_A Thi 100.0 1.1E-40 2.4E-45 323.4 22.1 170 150-374 1-173 (173)
271 cd03231 ABC_CcmA_heme_exporter 100.0 1.4E-40 3.1E-45 330.4 23.1 195 150-369 1-198 (201)
272 PRK13543 cytochrome c biogenes 100.0 2E-40 4.4E-45 332.4 24.3 202 148-371 10-212 (214)
273 PRK15134 microcin C ABC transp 100.0 2.1E-40 4.6E-45 374.5 27.2 224 149-384 5-245 (529)
274 TIGR01257 rim_protein retinal- 100.0 2E-40 4.4E-45 409.7 28.7 224 148-388 1936-2162(2272)
275 PRK13549 xylose transporter AT 100.0 1.4E-40 2.9E-45 374.2 24.3 223 149-383 259-492 (506)
276 TIGR03269 met_CoM_red_A2 methy 100.0 2.6E-40 5.6E-45 373.1 26.5 223 148-385 278-517 (520)
277 cd03244 ABCC_MRP_domain2 Domai 100.0 1.5E-40 3.2E-45 334.3 21.6 208 149-379 2-220 (221)
278 PRK09544 znuC high-affinity zi 100.0 2.6E-40 5.7E-45 339.7 23.7 202 149-384 4-208 (251)
279 COG4604 CeuD ABC-type enteroch 100.0 9.1E-42 2E-46 326.5 11.4 220 149-385 1-225 (252)
280 TIGR01257 rim_protein retinal- 100.0 6.5E-40 1.4E-44 405.3 29.7 223 148-388 927-1152(2272)
281 TIGR01271 CFTR_protein cystic 100.0 3.1E-41 6.7E-46 418.1 18.0 214 148-385 1216-1440(1490)
282 TIGR01189 ccmA heme ABC export 100.0 5.2E-40 1.1E-44 325.4 23.1 194 150-368 1-197 (198)
283 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 3.5E-40 7.5E-45 333.1 22.1 202 150-378 23-224 (224)
284 cd03229 ABC_Class3 This class 100.0 2.8E-40 6.1E-45 322.1 20.7 171 150-373 1-178 (178)
285 PRK13540 cytochrome c biogenes 100.0 4.7E-40 1E-44 326.3 22.4 193 150-367 2-197 (200)
286 COG1129 MglA ABC-type sugar tr 100.0 6.1E-40 1.3E-44 357.9 25.0 216 148-379 7-228 (500)
287 PRK13546 teichoic acids export 100.0 3.2E-39 7E-44 333.9 29.1 218 148-385 3-232 (264)
288 cd03248 ABCC_TAP TAP, the Tran 100.0 1.7E-40 3.8E-45 335.1 19.0 211 148-374 10-226 (226)
289 cd03288 ABCC_SUR2 The SUR doma 100.0 4.8E-40 1E-44 338.7 22.1 217 148-385 18-243 (257)
290 TIGR02324 CP_lyasePhnL phospho 100.0 1.1E-39 2.4E-44 328.8 24.1 208 150-370 2-223 (224)
291 COG4161 ArtP ABC-type arginine 100.0 2.5E-40 5.4E-45 307.3 17.5 216 149-382 2-227 (242)
292 cd03247 ABCC_cytochrome_bd The 100.0 4.9E-40 1.1E-44 320.3 20.4 175 150-378 1-178 (178)
293 cd03246 ABCC_Protease_Secretio 100.0 5.1E-40 1.1E-44 318.8 20.3 169 150-374 1-173 (173)
294 PRK09700 D-allose transporter 100.0 6.2E-40 1.3E-44 369.2 23.9 215 148-380 264-493 (510)
295 PRK10938 putative molybdenum t 100.0 5.2E-40 1.1E-44 368.1 22.9 209 149-384 3-223 (490)
296 COG4172 ABC-type uncharacteriz 100.0 1.4E-39 3.1E-44 339.1 24.3 230 146-384 273-515 (534)
297 PRK13539 cytochrome c biogenes 100.0 1.3E-39 2.8E-44 325.0 23.1 198 149-371 2-200 (207)
298 cd03369 ABCC_NFT1 Domain 2 of 100.0 1.3E-39 2.9E-44 324.5 22.8 198 149-380 6-207 (207)
299 cd03215 ABC_Carb_Monos_II This 100.0 1E-39 2.2E-44 319.2 21.5 171 149-374 4-182 (182)
300 TIGR02633 xylG D-xylose ABC tr 100.0 8.6E-40 1.9E-44 367.2 23.8 221 149-381 257-488 (500)
301 TIGR01194 cyc_pep_trnsptr cycl 100.0 9.8E-41 2.1E-45 379.3 14.6 210 148-377 336-551 (555)
302 TIGR01166 cbiO cobalt transpor 100.0 2.6E-39 5.6E-44 318.2 21.5 177 169-356 4-188 (190)
303 PRK13545 tagH teichoic acids e 100.0 7.6E-39 1.7E-43 352.6 27.5 214 149-387 21-234 (549)
304 PRK10762 D-ribose transporter 100.0 4.4E-39 9.5E-44 361.6 24.0 214 149-383 257-482 (501)
305 TIGR03771 anch_rpt_ABC anchore 100.0 4.4E-39 9.5E-44 324.8 21.5 197 178-384 1-200 (223)
306 cd03214 ABC_Iron-Siderophores_ 100.0 2.1E-39 4.6E-44 316.4 18.3 175 151-378 1-180 (180)
307 PRK11288 araG L-arabinose tran 100.0 3.8E-39 8.2E-44 362.1 22.5 215 149-383 257-483 (501)
308 cd03250 ABCC_MRP_domain1 Domai 100.0 6.8E-39 1.5E-43 318.7 20.2 194 150-373 1-204 (204)
309 COG3845 ABC-type uncharacteriz 100.0 1.1E-38 2.3E-43 341.8 22.6 215 149-379 4-223 (501)
310 PRK10522 multidrug transporter 100.0 8.4E-39 1.8E-43 362.9 23.2 203 148-377 321-530 (547)
311 COG4148 ModC ABC-type molybdat 100.0 1.7E-39 3.7E-44 325.2 14.5 195 174-385 15-218 (352)
312 PRK15439 autoinducer 2 ABC tra 100.0 1.4E-38 3E-43 358.2 23.4 214 149-383 268-490 (510)
313 PLN03232 ABC transporter C fam 100.0 5.6E-40 1.2E-44 407.4 13.0 336 12-385 469-828 (1495)
314 PRK13541 cytochrome c biogenes 100.0 2.8E-38 6.1E-43 312.3 22.5 191 150-366 2-192 (195)
315 cd03228 ABCC_MRP_Like The MRP 100.0 1.4E-38 2.9E-43 308.3 19.7 167 150-373 1-171 (171)
316 cd03290 ABCC_SUR1_N The SUR do 100.0 2.2E-38 4.8E-43 318.2 22.0 200 151-373 2-218 (218)
317 COG0396 sufC Cysteine desulfur 100.0 7.9E-38 1.7E-42 306.9 24.9 231 149-394 3-242 (251)
318 TIGR01187 potA spermidine/putr 100.0 2.5E-38 5.3E-43 336.7 23.1 187 188-385 1-190 (325)
319 cd03216 ABC_Carb_Monos_I This 100.0 3.6E-38 7.9E-43 303.2 21.7 157 150-376 1-162 (163)
320 cd03291 ABCC_CFTR1 The CFTR su 100.0 7.3E-38 1.6E-42 326.5 25.7 205 145-385 35-247 (282)
321 COG4619 ABC-type uncharacteriz 100.0 7E-40 1.5E-44 306.3 9.2 204 150-374 4-212 (223)
322 PRK10535 macrolide transporter 100.0 8E-38 1.7E-42 360.8 27.8 220 149-384 4-231 (648)
323 PRK15064 ABC transporter ATP-b 100.0 1E-37 2.2E-42 352.9 26.2 212 149-385 1-242 (530)
324 cd03223 ABCD_peroxisomal_ALDP 100.0 6.4E-38 1.4E-42 302.4 21.1 163 150-372 1-163 (166)
325 PLN03130 ABC transporter C fam 100.0 2E-39 4.3E-44 403.1 12.4 206 149-385 614-828 (1622)
326 PRK11819 putative ABC transpor 100.0 1.3E-37 2.8E-42 353.7 25.8 210 148-383 5-248 (556)
327 TIGR00954 3a01203 Peroxysomal 100.0 4.6E-39 1E-43 371.6 11.3 338 8-371 264-653 (659)
328 PRK10938 putative molybdenum t 100.0 1.2E-37 2.5E-42 349.1 22.1 215 148-378 259-485 (490)
329 PRK10982 galactose/methyl gala 100.0 1.6E-37 3.4E-42 348.1 23.0 215 148-380 249-475 (491)
330 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 3.8E-37 8.1E-42 349.7 24.2 211 149-385 4-248 (552)
331 PRK15064 ABC transporter ATP-b 100.0 3.3E-37 7.1E-42 348.6 23.6 203 148-384 318-524 (530)
332 PRK15177 Vi polysaccharide exp 100.0 2.8E-37 6E-42 309.7 20.3 195 171-389 1-196 (213)
333 COG1119 ModF ABC-type molybden 100.0 1.3E-37 2.9E-42 308.7 17.4 216 148-379 30-256 (257)
334 COG4172 ABC-type uncharacteriz 100.0 4E-37 8.7E-42 320.8 21.4 227 149-384 6-246 (534)
335 COG4608 AppF ABC-type oligopep 100.0 3.4E-37 7.4E-42 311.6 20.3 194 149-385 4-199 (268)
336 cd03237 ABC_RNaseL_inhibitor_d 100.0 1.1E-36 2.4E-41 311.9 22.5 190 171-383 8-205 (246)
337 COG4586 ABC-type uncharacteriz 100.0 3.3E-37 7.1E-42 308.3 16.1 208 170-388 37-249 (325)
338 PRK11819 putative ABC transpor 100.0 2.7E-36 5.9E-41 342.9 24.3 205 148-383 323-531 (556)
339 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 9.3E-36 2E-40 338.3 25.9 204 148-382 321-528 (552)
340 COG4674 Uncharacterized ABC-ty 100.0 2.1E-36 4.6E-41 289.3 16.1 220 148-384 4-234 (249)
341 cd03236 ABC_RNaseL_inhibitor_d 100.0 4.1E-36 9E-41 309.1 18.6 199 154-378 5-220 (255)
342 PRK13409 putative ATPase RIL; 100.0 1.3E-35 2.7E-40 338.0 24.0 197 148-379 339-536 (590)
343 PRK10636 putative ABC transpor 100.0 1.4E-35 3.1E-40 341.4 24.0 203 148-385 311-517 (638)
344 KOG0054 Multidrug resistance-a 100.0 1.4E-36 3.1E-41 361.9 15.3 335 25-385 1000-1362(1381)
345 PRK11147 ABC transporter ATPas 100.0 5.4E-35 1.2E-39 337.0 24.1 205 148-383 318-526 (635)
346 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 4.8E-35 1E-39 275.9 19.2 144 150-373 1-144 (144)
347 COG1134 TagH ABC-type polysacc 100.0 2.1E-34 4.5E-39 286.2 23.4 222 149-390 3-241 (249)
348 TIGR00957 MRP_assoc_pro multi 100.0 8E-35 1.7E-39 362.0 24.5 209 149-385 636-850 (1522)
349 PRK10636 putative ABC transpor 100.0 9.9E-35 2.2E-39 334.5 23.4 208 149-383 1-234 (638)
350 PLN03073 ABC transporter F fam 100.0 2.1E-34 4.6E-39 333.8 25.9 207 148-386 507-715 (718)
351 COG1101 PhnK ABC-type uncharac 100.0 5.6E-35 1.2E-39 283.6 16.9 203 168-378 17-231 (263)
352 COG4136 ABC-type uncharacteriz 100.0 5.7E-35 1.2E-39 268.7 15.3 192 149-357 2-197 (213)
353 cd03238 ABC_UvrA The excision 100.0 1.6E-34 3.4E-39 281.0 19.3 157 169-374 7-166 (176)
354 cd03222 ABC_RNaseL_inhibitor T 100.0 1.7E-34 3.7E-39 281.1 18.9 152 153-380 4-158 (177)
355 PRK11147 ABC transporter ATPas 100.0 5.4E-34 1.2E-38 328.6 24.1 207 149-383 3-241 (635)
356 KOG0059 Lipid exporter ABCA1 a 100.0 1.5E-34 3.2E-39 343.0 19.9 224 148-389 563-791 (885)
357 TIGR01271 CFTR_protein cystic 100.0 5.8E-34 1.3E-38 353.4 24.9 192 170-385 439-636 (1490)
358 COG4167 SapF ABC-type antimicr 100.0 4.1E-34 8.9E-39 270.8 17.1 226 149-384 4-238 (267)
359 cd00267 ABC_ATPase ABC (ATP-bi 100.0 1.8E-33 3.8E-38 268.4 19.9 152 152-373 2-157 (157)
360 KOG0054 Multidrug resistance-a 100.0 8.3E-33 1.8E-37 329.9 23.9 211 148-385 517-731 (1381)
361 PRK13409 putative ATPase RIL; 100.0 3.3E-33 7.3E-38 318.2 19.0 189 154-372 78-287 (590)
362 PTZ00243 ABC transporter; Prov 100.0 1.1E-32 2.4E-37 342.5 21.8 199 169-385 672-870 (1560)
363 COG4107 PhnK ABC-type phosphon 100.0 5.8E-33 1.2E-37 261.1 14.4 214 149-384 6-240 (258)
364 COG4133 CcmA ABC-type transpor 100.0 9.4E-33 2E-37 263.5 15.4 187 150-357 3-192 (209)
365 COG0488 Uup ATPase components 100.0 1.9E-32 4.1E-37 305.7 20.2 208 149-383 3-238 (530)
366 PLN03073 ABC transporter F fam 100.0 1.4E-32 3.1E-37 318.5 18.4 215 147-383 175-429 (718)
367 cd03270 ABC_UvrA_I The excisio 100.0 1.1E-30 2.4E-35 264.2 20.2 191 168-378 6-226 (226)
368 COG4778 PhnL ABC-type phosphon 100.0 3E-31 6.5E-36 248.8 13.7 213 148-371 3-227 (235)
369 PF00005 ABC_tran: ABC transpo 100.0 7.2E-31 1.6E-35 243.8 13.1 133 173-324 1-137 (137)
370 cd03271 ABC_UvrA_II The excisi 100.0 5E-30 1.1E-34 263.9 19.5 195 170-380 8-261 (261)
371 COG0488 Uup ATPase components 100.0 6.2E-29 1.3E-33 277.5 20.7 205 147-385 319-525 (530)
372 COG1129 MglA ABC-type sugar tr 100.0 1.5E-28 3.2E-33 268.8 21.8 212 148-379 262-484 (500)
373 cd03278 ABC_SMC_barmotin Barmo 100.0 6.8E-29 1.5E-33 246.1 12.5 165 174-371 14-190 (197)
374 COG4138 BtuD ABC-type cobalami 100.0 1.2E-29 2.7E-34 238.9 6.4 207 149-384 3-220 (248)
375 cd03274 ABC_SMC4_euk Eukaryoti 99.9 6.2E-29 1.3E-33 249.2 1.9 179 168-371 15-204 (212)
376 cd03272 ABC_SMC3_euk Eukaryoti 99.9 4.8E-27 1E-31 239.6 14.4 186 168-370 13-234 (243)
377 cd03273 ABC_SMC2_euk Eukaryoti 99.9 3.5E-27 7.6E-32 242.3 9.8 182 183-370 25-242 (251)
378 cd03279 ABC_sbcCD SbcCD and ot 99.9 2.2E-26 4.9E-31 230.7 14.9 192 149-373 5-210 (213)
379 PRK00635 excinuclease ABC subu 99.9 1.5E-25 3.2E-30 274.4 23.5 138 240-385 759-906 (1809)
380 COG4615 PvdE ABC-type sideroph 99.9 9.7E-27 2.1E-31 242.5 9.3 205 148-378 321-530 (546)
381 COG3845 ABC-type uncharacteriz 99.9 5.2E-25 1.1E-29 236.8 22.2 222 147-382 255-489 (501)
382 cd03240 ABC_Rad50 The catalyti 99.9 3.3E-26 7.2E-31 228.1 12.2 164 176-371 16-197 (204)
383 PRK00349 uvrA excinuclease ABC 99.9 9.2E-25 2E-29 257.7 24.0 126 244-385 792-927 (943)
384 COG4178 ABC-type uncharacteriz 99.9 3.1E-25 6.6E-30 247.1 17.5 197 147-370 390-587 (604)
385 TIGR00630 uvra excinuclease AB 99.9 1.1E-23 2.4E-28 248.1 22.7 125 243-383 789-923 (924)
386 KOG0927 Predicted transporter 99.9 1.5E-24 3.3E-29 234.1 13.9 215 147-383 73-307 (614)
387 KOG0927 Predicted transporter 99.9 1.2E-24 2.6E-29 235.0 11.1 203 147-381 387-592 (614)
388 COG4170 SapD ABC-type antimicr 99.9 1.4E-24 3.1E-29 209.9 10.5 229 150-385 4-248 (330)
389 cd03276 ABC_SMC6_euk Eukaryoti 99.9 5.6E-23 1.2E-27 204.0 14.8 167 173-373 12-192 (198)
390 COG1245 Predicted ATPase, RNas 99.9 2.3E-22 5E-27 213.3 15.6 174 172-370 356-530 (591)
391 KOG0060 Long-chain acyl-CoA tr 99.9 4.4E-22 9.4E-27 216.6 18.0 204 148-371 432-641 (659)
392 cd03275 ABC_SMC1_euk Eukaryoti 99.9 4.8E-23 1E-27 211.2 9.6 180 181-371 21-233 (247)
393 KOG0062 ATPase component of AB 99.9 1.7E-22 3.6E-27 217.4 10.0 202 148-383 79-283 (582)
394 KOG2355 Predicted ABC-type tra 99.9 2E-21 4.3E-26 187.8 15.7 210 148-385 12-237 (291)
395 KOG0066 eIF2-interacting prote 99.9 7.9E-22 1.7E-26 207.4 13.7 193 146-372 583-777 (807)
396 cd03277 ABC_SMC5_euk Eukaryoti 99.8 1.4E-20 3E-25 189.0 15.7 81 292-373 123-211 (213)
397 KOG0062 ATPase component of AB 99.8 1.2E-20 2.5E-25 203.3 14.2 205 146-380 359-564 (582)
398 cd03280 ABC_MutS2 MutS2 homolo 99.8 1.3E-20 2.8E-25 187.2 12.2 153 172-378 16-172 (200)
399 cd03239 ABC_SMC_head The struc 99.8 1.4E-19 3E-24 176.7 14.6 74 296-371 95-172 (178)
400 COG1245 Predicted ATPase, RNas 99.8 3.7E-20 7.9E-25 196.7 10.3 170 179-371 96-288 (591)
401 cd03283 ABC_MutS-like MutS-lik 99.8 1.6E-19 3.5E-24 179.3 10.0 136 169-356 13-149 (199)
402 PRK00635 excinuclease ABC subu 99.8 1.9E-18 4.1E-23 212.5 21.2 200 171-385 1504-1796(1809)
403 COG0178 UvrA Excinuclease ATPa 99.8 4.3E-18 9.2E-23 191.7 21.0 128 243-385 783-919 (935)
404 cd03285 ABC_MSH2_euk MutS2 hom 99.8 1.7E-19 3.7E-24 182.1 8.7 153 169-379 16-175 (222)
405 KOG0064 Peroxisomal long-chain 99.8 3.4E-19 7.3E-24 191.8 10.9 185 149-357 481-671 (728)
406 cd03241 ABC_RecN RecN ATPase i 99.8 1.7E-18 3.7E-23 180.5 14.6 76 295-373 170-249 (276)
407 COG2401 ABC-type ATPase fused 99.8 1.1E-18 2.3E-23 183.7 12.4 205 149-375 357-588 (593)
408 cd03227 ABC_Class2 ABC-type Cl 99.8 3.3E-18 7.2E-23 164.4 12.2 75 295-371 77-155 (162)
409 PRK00349 uvrA excinuclease ABC 99.7 1.9E-17 4.2E-22 195.9 15.0 136 242-385 435-585 (943)
410 TIGR00630 uvra excinuclease AB 99.7 3.4E-17 7.3E-22 193.6 15.7 134 243-384 434-582 (924)
411 KOG0066 eIF2-interacting prote 99.7 2.7E-18 5.8E-23 181.0 5.5 214 148-380 263-494 (807)
412 cd03242 ABC_RecF RecF is a rec 99.7 1.1E-16 2.3E-21 166.5 16.7 77 293-374 181-269 (270)
413 cd03243 ABC_MutS_homologs The 99.7 3.7E-17 8.1E-22 162.6 11.1 155 176-383 22-177 (202)
414 cd03282 ABC_MSH4_euk MutS4 hom 99.7 1.9E-16 4.1E-21 157.9 8.7 136 169-356 15-152 (204)
415 cd03284 ABC_MutS1 MutS1 homolo 99.6 6.6E-16 1.4E-20 155.4 10.5 160 169-384 17-180 (216)
416 TIGR02858 spore_III_AA stage I 99.6 3.5E-15 7.5E-20 154.7 10.9 139 184-383 112-267 (270)
417 KOG0063 RNAse L inhibitor, ABC 99.6 1.6E-14 3.5E-19 152.9 12.0 178 169-370 348-531 (592)
418 PRK00064 recF recombination pr 99.5 9.9E-13 2.1E-17 142.3 19.2 78 293-374 271-359 (361)
419 smart00534 MUTSac ATPase domai 99.5 1.8E-14 4E-19 141.5 4.2 80 294-376 60-141 (185)
420 cd00820 PEPCK_HprK Phosphoenol 99.4 1E-13 2.3E-18 123.5 6.4 73 170-253 2-78 (107)
421 cd03281 ABC_MSH5_euk MutS5 hom 99.4 8.7E-13 1.9E-17 132.6 12.3 133 172-356 18-155 (213)
422 PF02463 SMC_N: RecF/RecN/SMC 99.4 1.6E-12 3.5E-17 130.6 13.3 73 295-370 136-212 (220)
423 TIGR01069 mutS2 MutS2 family p 99.4 2.9E-13 6.3E-18 158.7 8.8 131 175-356 313-446 (771)
424 cd01128 rho_factor Transcripti 99.4 1.2E-12 2.6E-17 134.3 10.1 174 178-374 11-211 (249)
425 PTZ00132 GTP-binding nuclear p 99.4 1E-12 2.2E-17 131.6 7.4 44 300-343 157-205 (215)
426 PRK07721 fliI flagellum-specif 99.3 1.7E-11 3.7E-16 135.0 14.2 174 169-382 145-340 (438)
427 cd03287 ABC_MSH3_euk MutS3 hom 99.3 1.7E-11 3.6E-16 123.9 13.0 135 169-356 17-155 (222)
428 KOG0063 RNAse L inhibitor, ABC 99.3 6.3E-12 1.4E-16 133.5 8.9 185 181-387 98-309 (592)
429 TIGR00634 recN DNA repair prot 99.3 5.2E-12 1.1E-16 144.4 9.0 77 294-373 439-519 (563)
430 PHA02562 46 endonuclease subun 99.3 8.6E-12 1.9E-16 142.5 8.8 79 292-374 465-555 (562)
431 PRK10869 recombination and rep 99.3 1.5E-11 3.2E-16 139.9 9.9 77 294-373 429-509 (553)
432 PRK00409 recombination and DNA 99.2 6.5E-12 1.4E-16 147.7 6.9 81 294-377 389-470 (782)
433 TIGR00618 sbcc exonuclease Sbc 99.2 2.3E-11 4.9E-16 148.5 11.1 81 291-372 946-1036(1042)
434 COG0178 UvrA Excinuclease ATPa 99.2 1.6E-10 3.5E-15 131.3 14.9 138 241-385 426-577 (935)
435 PRK08533 flagellar accessory p 99.2 2.8E-10 6E-15 115.8 13.2 150 179-370 20-184 (230)
436 cd01124 KaiC KaiC is a circadi 99.2 3.9E-10 8.4E-15 109.9 13.1 78 293-370 69-163 (187)
437 cd03286 ABC_MSH6_euk MutS6 hom 99.1 9.1E-11 2E-15 118.3 8.6 137 169-356 16-154 (218)
438 PF13304 AAA_21: AAA domain; P 99.1 5.4E-11 1.2E-15 118.4 6.4 63 294-356 235-300 (303)
439 PF01061 ABC2_membrane: ABC-2 99.1 9.9E-12 2.1E-16 122.1 0.8 144 491-638 1-146 (210)
440 PRK13695 putative NTPase; Prov 99.1 3.7E-11 7.9E-16 116.7 4.1 79 294-378 77-157 (174)
441 PRK03918 chromosome segregatio 99.1 1.7E-10 3.7E-15 138.7 9.3 78 292-371 785-868 (880)
442 PRK13830 conjugal transfer pro 99.1 3E-09 6.5E-14 126.5 17.2 78 311-392 650-736 (818)
443 PRK10246 exonuclease subunit S 99.0 5.1E-10 1.1E-14 136.3 10.8 80 291-371 945-1032(1047)
444 TIGR00606 rad50 rad50. This fa 99.0 4.5E-10 9.8E-15 139.9 10.0 110 241-363 1154-1277(1311)
445 TIGR02788 VirB11 P-type DNA tr 99.0 6.3E-10 1.4E-14 118.0 9.0 144 175-384 136-280 (308)
446 PRK06793 fliI flagellum-specif 99.0 1.3E-09 2.9E-14 119.5 11.5 169 150-380 131-306 (432)
447 cd01120 RecA-like_NTPases RecA 99.0 1.3E-09 2.8E-14 102.6 9.5 63 296-358 68-140 (165)
448 PRK01156 chromosome segregatio 99.0 1.3E-09 2.8E-14 131.3 10.4 77 292-370 798-883 (895)
449 COG3910 Predicted ATPase [Gene 99.0 1.1E-08 2.3E-13 98.9 13.5 82 289-373 123-205 (233)
450 cd01131 PilT Pilus retraction 98.9 4.1E-09 8.9E-14 104.7 10.5 57 305-370 66-122 (198)
451 TIGR02168 SMC_prok_B chromosom 98.9 1.4E-09 3.1E-14 133.8 7.3 76 292-370 1086-1165(1179)
452 PRK06067 flagellar accessory p 98.9 1.6E-08 3.5E-13 102.8 12.8 164 171-371 12-187 (234)
453 PRK06995 flhF flagellar biosyn 98.8 1.3E-08 2.9E-13 113.1 10.2 152 171-354 244-401 (484)
454 PRK02224 chromosome segregatio 98.8 9.7E-09 2.1E-13 123.6 9.1 78 293-372 779-869 (880)
455 TIGR02169 SMC_prok_A chromosom 98.8 7.6E-09 1.7E-13 127.6 7.9 77 292-371 1071-1151(1164)
456 TIGR03238 dnd_assoc_3 dnd syst 98.8 6.1E-09 1.3E-13 114.3 5.3 52 170-224 19-70 (504)
457 cd01125 repA Hexameric Replica 98.8 4.7E-08 1E-12 99.9 11.2 136 183-356 1-160 (239)
458 smart00382 AAA ATPases associa 98.7 3.3E-07 7.2E-12 82.7 15.0 118 182-353 1-124 (148)
459 TIGR01420 pilT_fam pilus retra 98.6 1.7E-07 3.6E-12 101.1 10.3 124 180-369 119-242 (343)
460 PRK13891 conjugal transfer pro 98.6 4.8E-07 1E-11 108.3 14.1 69 306-375 680-751 (852)
461 TIGR01026 fliI_yscN ATPase Fli 98.6 5.5E-07 1.2E-11 99.7 13.3 175 169-383 150-346 (440)
462 TIGR03881 KaiC_arch_4 KaiC dom 98.5 2.8E-08 6E-13 100.6 2.0 50 171-221 7-57 (229)
463 TIGR00611 recf recF protein. A 98.5 1.3E-07 2.7E-12 102.8 7.2 60 294-356 274-342 (365)
464 PRK07196 fliI flagellum-specif 98.5 9.8E-08 2.1E-12 104.9 5.9 86 169-256 142-239 (434)
465 TIGR02655 circ_KaiC circadian 98.5 6.3E-09 1.4E-13 117.1 -3.8 167 171-370 8-190 (484)
466 PRK14079 recF recombination pr 98.5 2E-07 4.3E-12 100.7 7.7 76 295-378 263-347 (349)
467 cd01130 VirB11-like_ATPase Typ 98.5 3.3E-07 7.2E-12 90.1 8.0 84 172-257 14-100 (186)
468 COG0419 SbcC ATPase involved i 98.4 6.1E-07 1.3E-11 108.5 10.3 78 292-371 812-897 (908)
469 PRK06002 fliI flagellum-specif 98.4 8E-07 1.7E-11 97.9 9.0 83 147-239 137-230 (450)
470 cd02023 UMPK Uridine monophosp 98.4 3.1E-07 6.7E-12 90.9 5.3 112 185-328 1-113 (198)
471 PRK05399 DNA mismatch repair p 98.3 1E-06 2.2E-11 105.4 8.4 138 170-365 595-738 (854)
472 TIGR02680 conserved hypothetic 98.3 9.7E-07 2.1E-11 110.3 7.5 60 293-355 1245-1316(1353)
473 PRK13898 type IV secretion sys 98.3 2.6E-05 5.5E-10 93.3 18.5 49 309-357 638-687 (800)
474 PLN03210 Resistant to P. syrin 98.3 2.5E-06 5.3E-11 105.7 9.7 166 172-392 196-365 (1153)
475 PRK09825 idnK D-gluconate kina 98.2 6.6E-07 1.4E-11 87.4 3.7 66 182-253 2-70 (176)
476 cd01122 GP4d_helicase GP4d_hel 98.2 4.3E-05 9.4E-10 79.2 15.4 36 170-205 17-52 (271)
477 PRK13873 conjugal transfer ATP 98.2 6E-05 1.3E-09 90.2 18.4 46 311-356 633-679 (811)
478 TIGR00767 rho transcription te 98.1 5.4E-06 1.2E-10 90.0 7.3 53 148-207 129-192 (415)
479 PRK06315 type III secretion sy 98.1 7.6E-06 1.6E-10 90.4 8.3 109 170-281 152-277 (442)
480 cd00009 AAA The AAA+ (ATPases 98.0 3.5E-05 7.5E-10 70.2 10.6 55 301-356 72-131 (151)
481 PF13555 AAA_29: P-loop contai 98.0 6.1E-06 1.3E-10 66.4 4.5 36 173-208 12-48 (62)
482 PRK09270 nucleoside triphospha 98.0 5.7E-06 1.2E-10 84.1 5.4 72 181-255 31-106 (229)
483 PRK01889 GTPase RsgA; Reviewed 98.0 1.1E-05 2.4E-10 87.5 7.7 78 172-252 184-262 (356)
484 PRK00454 engB GTP-binding prot 98.0 6.4E-05 1.4E-09 73.5 12.1 67 270-344 126-195 (196)
485 PF09818 ABC_ATPase: Predicted 98.0 0.00018 3.9E-09 78.5 16.1 159 178-374 240-416 (448)
486 cd01876 YihA_EngB The YihA (En 98.0 8.8E-06 1.9E-10 76.3 5.4 64 270-341 101-169 (170)
487 TIGR00416 sms DNA repair prote 98.0 2.4E-05 5.3E-10 87.4 9.5 62 312-373 169-247 (454)
488 PRK03846 adenylylsulfate kinas 98.0 5.1E-06 1.1E-10 82.5 3.5 56 181-237 22-77 (198)
489 PF13558 SbcCD_C: Putative exo 97.9 1.9E-05 4.2E-10 68.5 6.3 48 293-340 30-90 (90)
490 TIGR00235 udk uridine kinase. 97.9 3.9E-06 8.4E-11 83.9 2.2 27 181-207 4-30 (207)
491 TIGR00554 panK_bact pantothena 97.9 7.7E-06 1.7E-10 85.9 4.5 73 184-257 63-138 (290)
492 PRK10078 ribose 1,5-bisphospho 97.9 1.1E-05 2.3E-10 79.3 5.1 37 183-224 2-38 (186)
493 TIGR00152 dephospho-CoA kinase 97.9 1.3E-05 2.7E-10 78.9 5.3 72 299-372 61-133 (188)
494 PRK10416 signal recognition pa 97.9 9E-06 1.9E-10 86.7 4.4 71 181-253 112-192 (318)
495 TIGR02524 dot_icm_DotB Dot/Icm 97.9 7.6E-05 1.6E-09 80.9 11.1 123 181-368 132-258 (358)
496 PRK08149 ATP synthase SpaL; Va 97.9 2E-05 4.3E-10 86.8 6.7 68 169-238 138-215 (428)
497 PRK13764 ATPase; Provisional 97.9 4.4E-05 9.5E-10 87.4 9.6 64 310-381 321-401 (602)
498 TIGR02903 spore_lon_C ATP-depe 97.9 3.7E-05 8.1E-10 89.0 9.1 111 183-340 175-291 (615)
499 cd01121 Sms Sms (bacterial rad 97.8 7.3E-05 1.6E-09 81.4 10.1 35 173-207 71-106 (372)
500 PRK09183 transposase/IS protei 97.8 6.5E-05 1.4E-09 77.9 8.6 34 171-205 91-124 (259)
No 1
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=9e-86 Score=756.80 Aligned_cols=472 Identities=50% Similarity=0.888 Sum_probs=390.8
Q ss_pred CeeEEEEeEEEEEeeccc---------------------cccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 006571 147 PIYLKFTDVTYKVILKGM---------------------TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 147 ~~~l~~~~vs~~~~~~~~---------------------~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G 205 (640)
+..++|.|++|+....+. ...+++.+|+|||+++++||++||+||||||||||||+|+|
T Consensus 37 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG 116 (659)
T PLN03211 37 PITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAG 116 (659)
T ss_pred ceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhC
Confidence 568999999998753320 01135679999999999999999999999999999999999
Q ss_pred CCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCcccc
Q 006571 206 RLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 285 (640)
Q Consensus 206 ~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 285 (640)
+......+|+|.+||+++....++++|||+|++.+++.+||+||+.|++.++.+...++++++++++++++.+||.++.|
T Consensus 117 ~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 196 (659)
T PLN03211 117 RIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCEN 196 (659)
T ss_pred CCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcC
Confidence 76422248999999999866666789999999999999999999999887766655566677788999999999999999
Q ss_pred ccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCE
Q 006571 286 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDK 365 (640)
Q Consensus 286 t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~ 365 (640)
|.+|+..+++||||||||++||++|+.+|+||||||||+|||+.++..+++.|++++++|+|||+++||++.++.++||+
T Consensus 197 t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~ 276 (659)
T PLN03211 197 TIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDS 276 (659)
T ss_pred ceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhce
Confidence 99999889999999999999999999999999999999999999999999999999988999999999998778899999
Q ss_pred EEEEcCCeEEEecChHHHHHHHHhcCCCCCCCCChHHHHHHhhcCCCCCcCCCchhhhhhhcccccccccCCCCChhhHH
Q 006571 366 LILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVH 445 (640)
Q Consensus 366 i~vL~~G~iv~~G~~~~~~~~f~~~g~~~~~~~npad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (640)
|++|++|++++.|+++++.+||+++|++||.+.|||||++++++.+........ .+ . ....
T Consensus 277 iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ldv~~~~~~~~~~~~----------~~------~---~~~~ 337 (659)
T PLN03211 277 VLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQTDGVSE----------RE------K---PNVK 337 (659)
T ss_pred EEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHcCccccCCCccc----------cc------c---chHH
Confidence 999999999999999999999999999999999999999999875421100000 00 0 0011
Q ss_pred HHHHHHHHHHHHHHHHhhh--c-CCCCCcHHH---hhhc-CCCCCCcCCCHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 006571 446 EYLVEAYETRVAENEKKKL--M-APIPLDEEI---KAKV-SSPKRNWGASWIQQYTILFRRGIKEHRHDYFSWLRITQVL 518 (640)
Q Consensus 446 ~~l~~~~~~~~~~~~~~~~--~-~~~~~~~~~---~~~~-~~~~~~~~~s~~~Q~~~L~~R~~~~~r~~~~~~~r~~~~i 518 (640)
+.+.+.|++.......... . ......... .... ...+..+..+||+|+.+|++|+++++|++.+.++|+++.+
T Consensus 338 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~~r~~~~~~~r~~~~i 417 (659)
T PLN03211 338 QSLVASYNTLLAPKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKERKHESFNTLRVFQVI 417 (659)
T ss_pred HHHHHHHHhhccHHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 1222333221110000000 0 000000000 0000 0112235678999999999999999999988889999999
Q ss_pred HHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhCCCCChHHHHHHHHHHHHHHH
Q 006571 519 ATAVILGLLWWQSDSKSPKGLEDQAGLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLN 598 (640)
Q Consensus 519 ~~aliiG~lf~~~~~~~~~~~~~~~g~lff~~~~~~~~~~~~~i~~~~~er~v~~rE~~~g~Y~~~ay~lA~~l~~lP~~ 598 (640)
++|+++|++||+++ +.++++|.|++||+++++++.+++.++..|++||+||+||+.+|+|++++|++|++++|+|+.
T Consensus 418 ~~~ll~G~lf~~~~---~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~ 494 (659)
T PLN03211 418 AAALLAGLMWWHSD---FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPME 494 (659)
T ss_pred HHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999984 578999999999999998888888999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHhcC
Q 006571 599 LVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQALY 640 (640)
Q Consensus 599 ~i~~~if~~i~Y~m~gl~~~~~~F~~f~l~~~l~~~~~~~l~ 640 (640)
++.+++|++|+|||+||++++.+||+|++++++..+++++++
T Consensus 495 ~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g 536 (659)
T PLN03211 495 LILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLG 536 (659)
T ss_pred HHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999873
No 2
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=6.9e-86 Score=750.95 Aligned_cols=461 Identities=45% Similarity=0.772 Sum_probs=395.5
Q ss_pred CeeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CcccEEEECCEeCC-
Q 006571 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYS- 224 (640)
Q Consensus 147 ~~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~-~~~G~I~~~G~~~~- 224 (640)
+..++|+|+++..+.+. ...+++|+|||++++|||++||||||||||||||++|+||.... ..+|+|++||++..
T Consensus 23 ~~~~~~~~~~~~~~~~~---~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~ 99 (613)
T KOG0061|consen 23 PVKLSFRNLTLSSKEKS---KKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDS 99 (613)
T ss_pred cceeEEEEEEEEecCCC---CccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCch
Confidence 45799999999874321 14588999999999999999999999999999999999998653 57899999997664
Q ss_pred hhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHH
Q 006571 225 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (640)
Q Consensus 225 ~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (640)
+.+++.+|||.|||.++|++||+|+|.|.+.+|+|+.+++++++++|+++++++||.+|+||.+|+...+++||||||||
T Consensus 100 ~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRv 179 (613)
T KOG0061|consen 100 RSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRV 179 (613)
T ss_pred hhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHH
Confidence 46788899999999999999999999999999999988999999999999999999999999999988899999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHH
Q 006571 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (640)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (640)
+||.+|++||+||+|||||||||+.++.++++.|+++|++|+|||+++|||+.+++++||++++|.+|+++|+|+++++.
T Consensus 180 sia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~ 259 (613)
T KOG0061|consen 180 SIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELL 259 (613)
T ss_pred HHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCChHHHHHHhhcCCCCCcCCCchhhhhhhcccccccccCCCCChhhHHHHHHHHHHHHHHHHHHhhh
Q 006571 385 AYFSSIGCSPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKL 464 (640)
Q Consensus 385 ~~f~~~g~~~~~~~npad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 464 (640)
+||+++|++||.+.||+||++++++.+ .. ..+.....+..... ..... .....+... .+. ...
T Consensus 260 ~ff~~~G~~~P~~~Npadf~l~l~s~~-~~---~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~-~~~--------~~~ 322 (613)
T KOG0061|consen 260 EFFSSLGFPCPELENPADFLLDLLSVD-SG---TRELEEAVRIAKLI---NKFSQ-TDNLKKTLE-ALE--------KSL 322 (613)
T ss_pred HHHHhCCCCCCCcCChHHHHHHHHccC-CC---chhHHhHHHHHHHh---hhccc-cchhhhhHH-HHh--------hhc
Confidence 999999999999999999999998754 00 00000000000000 00000 000000000 000 000
Q ss_pred cCCCCCcHHHhhhcCCCCCCcCCCHHHHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHH
Q 006571 465 MAPIPLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKE-HRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGLEDQA 543 (640)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~aliiG~lf~~~~~~~~~~~~~~~ 543 (640)
.... ........+||.|+++|++|.+++ +|++.+.+.|+++.+.+|+++|++||+++. ++++++++.
T Consensus 323 ~~~~-----------~~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~-~~~~~~~~~ 390 (613)
T KOG0061|consen 323 STSK-----------KVEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGN-DAKGIQNRL 390 (613)
T ss_pred cccc-----------ccccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCC-chHHHHHHH
Confidence 0000 000111689999999999999997 688888999999999999999999999965 578888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCChHHHH
Q 006571 544 GLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFF 623 (640)
Q Consensus 544 g~lff~~~~~~~~~~~~~i~~~~~er~v~~rE~~~g~Y~~~ay~lA~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~F~ 623 (640)
|++||++.++.|.++++++..|++||++|.||+.+|+|+.++||+|++++++|+.++.+++|++|+|||+||++++.+|+
T Consensus 391 g~~~~~~~~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~ 470 (613)
T KOG0061|consen 391 GLFFFILSFMTFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFL 470 (613)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHH
Confidence 99999999998999888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhc
Q 006571 624 LSMLTVFLSIVAAQAL 639 (640)
Q Consensus 624 ~f~l~~~l~~~~~~~l 639 (640)
+|++++++..++++++
T Consensus 471 ~~~l~~~~~~~~a~s~ 486 (613)
T KOG0061|consen 471 YFLLIILLSSLVAESL 486 (613)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999886
No 3
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=1.5e-80 Score=712.05 Aligned_cols=467 Identities=35% Similarity=0.578 Sum_probs=385.7
Q ss_pred eEEEEeEEEEEeecc-ccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CcccEEEECCEeCC-h
Q 006571 149 YLKFTDVTYKVILKG-MTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYS-K 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~-~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~-~~~G~I~~~G~~~~-~ 225 (640)
.++|.++. +++... +++.+++++|+|+|++++|||++||+|||||||||||++|+|+.... ..+|+|.+||.++. .
T Consensus 17 ~~~~~~~~-~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~ 95 (617)
T TIGR00955 17 DGSWKQLV-SRLRGCFCRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAK 95 (617)
T ss_pred cchhhhhh-hhcccccccccCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHH
Confidence 45666665 432211 11234678999999999999999999999999999999999976421 24799999999986 3
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCcc-CCcCCHHHHHHH
Q 006571 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSF-VRGVSGGERKRV 304 (640)
Q Consensus 226 ~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~-~~~LSGGqrqRv 304 (640)
.+++.+|||+|+|.+++.+||+|||.|++.++.+...++++++++++++++.+||.++.||.+|+.. .++|||||||||
T Consensus 96 ~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRv 175 (617)
T TIGR00955 96 EMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRL 175 (617)
T ss_pred HHhhhceeeccccccCccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHH
Confidence 5678899999999999999999999999988887767777888899999999999999999999753 678999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHH
Q 006571 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (640)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (640)
+||++|+.+|+++||||||+|||+.++..+++.|++++++|+|||+++|||+.++++.||++++|++|+++|.|+++++.
T Consensus 176 sia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~ 255 (617)
T TIGR00955 176 AFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAV 255 (617)
T ss_pred HHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHH
Confidence 99999999999999999999999999999999999999889999999999988889999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCChHHHHHHhhcCCCCCcCCCchhhhhhhcccccccccCCCCChhhHHHHHHHHHHHHHHHHHHhhh
Q 006571 385 AYFSSIGCSPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKL 464 (640)
Q Consensus 385 ~~f~~~g~~~~~~~npad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 464 (640)
+||+++|++||.+.||+||++++++.+..... + .....+.+.+.|.+.....+....
T Consensus 256 ~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~---~--------------------~~~~~~~~~~~~~~s~~~~~~~~~ 312 (617)
T TIGR00955 256 PFFSDLGHPCPENYNPADFYVQVLAVIPGSEN---E--------------------SRERIEKICDSFAVSDIGRDMLVN 312 (617)
T ss_pred HHHHHcCCCCCCCCChHHHHHHHhhcCccccc---c--------------------hHHHHHHHHHHHhcchhhHHHHHH
Confidence 99999999999999999999999764321100 0 000011112222211000000000
Q ss_pred cC-CCCCcHHH-hhhcCCCCCCcCCCHHHHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHH
Q 006571 465 MA-PIPLDEEI-KAKVSSPKRNWGASWIQQYTILFRRGIKE-HRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGLED 541 (640)
Q Consensus 465 ~~-~~~~~~~~-~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~aliiG~lf~~~~~~~~~~~~~ 541 (640)
.. ........ +.........+..+||+|+.+|++|+++. +|++.+.++|+++.+++|+++|++||+++. ++.++++
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~-~~~~~~~ 391 (617)
T TIGR00955 313 TNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGL-TQKGVQN 391 (617)
T ss_pred hhhhhccccccccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCC-CHHHHHH
Confidence 00 00000000 00000122356789999999999999986 788888899999999999999999999975 5789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCChHH
Q 006571 542 QAGLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGP 621 (640)
Q Consensus 542 ~~g~lff~~~~~~~~~~~~~i~~~~~er~v~~rE~~~g~Y~~~ay~lA~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~ 621 (640)
+.|++|+++++++|.+++.++..|+.||++|+||+.+|+|++++|++|++++|+|+.++.+++|.+|+|||+|+++++.+
T Consensus 392 ~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~ 471 (617)
T TIGR00955 392 INGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATH 471 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHH
Confidence 99999999998888888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q 006571 622 FFLSMLTVFLSIVAAQALY 640 (640)
Q Consensus 622 F~~f~l~~~l~~~~~~~l~ 640 (640)
||+|++++++..+++++++
T Consensus 472 f~~f~l~~~l~~~~~~s~~ 490 (617)
T TIGR00955 472 FLTFLFLVTLVANVATSFG 490 (617)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888763
No 4
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=2.6e-78 Score=740.54 Aligned_cols=466 Identities=29% Similarity=0.499 Sum_probs=385.1
Q ss_pred CCCeeEEEEeEEEEEeecccc-----ccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEEC
Q 006571 145 TLPIYLKFTDVTYKVILKGMT-----SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN 219 (640)
Q Consensus 145 ~~~~~l~~~~vs~~~~~~~~~-----~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~ 219 (640)
..|..+.|+||+|.++.+... ..+.+.+|+|||++++||+++||+||||||||||||+|+|+......+|+|.+|
T Consensus 863 ~~~~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~in 942 (1470)
T PLN03140 863 FTPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRIS 942 (1470)
T ss_pred CCcceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEEC
Confidence 345579999999998543210 113457999999999999999999999999999999999986433468999999
Q ss_pred CEeCCh-hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCH
Q 006571 220 DHPYSK-SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (640)
Q Consensus 220 G~~~~~-~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (640)
|.+..+ .+++.+|||+|+|.+++.+||+|||.|++.++.+...+++++.++++++++.+||.++.|+.+|+..+++|||
T Consensus 943 G~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSg 1022 (1470)
T PLN03140 943 GFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLST 1022 (1470)
T ss_pred CccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCH
Confidence 998753 4567899999999999999999999999887776656667777889999999999999999999877789999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcC-CeEEEe
Q 006571 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK-GSLLYF 377 (640)
Q Consensus 299 GqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~-G~iv~~ 377 (640)
||||||+||++|+.+|+||||||||+|||+.++..+++.|++++++|+|||+++|||+.++++.||++++|++ |+++|+
T Consensus 1023 GerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~ 1102 (1470)
T PLN03140 1023 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYS 1102 (1470)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEE
Confidence 9999999999999999999999999999999999999999999988999999999998778899999999996 899999
Q ss_pred cCh----HHHHHHHHhc-CC-CCCCCCChHHHHHHhhcCCCCCcCCCchhhhhhhcccccccccCCCCChhhHHHHHHHH
Q 006571 378 GKA----SEAMAYFSSI-GC-SPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEA 451 (640)
Q Consensus 378 G~~----~~~~~~f~~~-g~-~~~~~~npad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 451 (640)
|++ +++.+||+++ |+ +||++.|||||++++++.+... .. ..+..+.+..+ +.
T Consensus 1103 G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~---------~~--~~d~~~~~~~s-----------~~ 1160 (1470)
T PLN03140 1103 GPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEV---------KL--GIDFAEHYKSS-----------SL 1160 (1470)
T ss_pred CCcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccccc---------cc--cchHHHHHhcc-----------HH
Confidence 996 6899999998 66 4999999999999987532110 00 00000001000 01
Q ss_pred HHHHHHHHHHhhhcCCCCCcHHHhhhcCCCCCCcCCCHHHHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHHHHHhcC
Q 006571 452 YETRVAENEKKKLMAPIPLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKE-HRHDYFSWLRITQVLATAVILGLLWWQ 530 (640)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~aliiG~lf~~ 530 (640)
|.+..... .....+.+. .........+..+||+|+.+|++|+++. ||++.+.+.|+++.+++|+++|++||+
T Consensus 1161 ~~~~~~~~--~~~~~~~~~-----~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~ 1233 (1470)
T PLN03140 1161 YQRNKALV--KELSTPPPG-----ASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWK 1233 (1470)
T ss_pred HHHHHHHH--HHhccCCCC-----ccccccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhC
Confidence 11100000 011111100 0011123467899999999999999985 899999999999999999999999999
Q ss_pred CCCCC--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006571 531 SDSKS--PKGLEDQAGLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVI 608 (640)
Q Consensus 531 ~~~~~--~~~~~~~~g~lff~~~~~~~~~~~~~i~~~~~er~v~~rE~~~g~Y~~~ay~lA~~l~~lP~~~i~~~if~~i 608 (640)
++++. ..+++++.|++|++++++++..+...++.|+.||+||+||+++|+|++++|++|++++|+|+.++.+++|.+|
T Consensus 1234 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i 1313 (1470)
T PLN03140 1234 VGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLI 1313 (1470)
T ss_pred CCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 97642 3678899999999999888877777788999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCChHHHHHHHHHHHHHHHHHHhc
Q 006571 609 VYFMAGLRMGAGPFFLSMLTVFLSIVAAQAL 639 (640)
Q Consensus 609 ~Y~m~gl~~~~~~F~~f~l~~~l~~~~~~~l 639 (640)
+|||+||++++.+||+|+++++++.+++.++
T Consensus 1314 ~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~ 1344 (1470)
T PLN03140 1314 VYAMVAFEWTAAKFFWFYFISFFSFLYFTYY 1344 (1470)
T ss_pred HHhhcCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988888765
No 5
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=7.6e-78 Score=738.24 Aligned_cols=452 Identities=29% Similarity=0.473 Sum_probs=371.0
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC--CCcccEEEECCEeCCh---hccCcEEEEccCCCCCCC
Q 006571 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME--PTVGGSITYNDHPYSK---SLKSKIGFVTQDDVLFPH 243 (640)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~--~~~~G~I~~~G~~~~~---~~~~~i~yV~Q~~~l~~~ 243 (640)
.+++|+|||+++++||+++|+||||||||||||+|+|+... .+.+|+|.+||+++.+ ..++.++||+|++.+++.
T Consensus 73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCC
Confidence 46799999999999999999999999999999999997531 2468999999998742 346679999999999999
Q ss_pred CCHHHHHHHHHhccCCC----CccHHHHHHH-HHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEE
Q 006571 244 LTVKETLTYAALLRLPN----TLTKQQKEKR-AIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 318 (640)
Q Consensus 244 lTV~Enl~~~~~~~~~~----~~~~~~~~~~-v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLl 318 (640)
+||+|||.|++.++.|. ..++++..++ ++++++.+||.++.|+.+|+..+++|||||||||+||++|+.+|+|+|
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vll 232 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQC 232 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEE
Confidence 99999999998876543 2344444444 467899999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHHHHHhcCCCCCCC
Q 006571 319 LDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIA 397 (640)
Q Consensus 319 LDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~~f~~~g~~~~~~ 397 (640)
|||||+|||+.++.++++.|++++++ |+|||+++|||+.+++++||+|++|++|+++++|+++++.+||+++|++||++
T Consensus 233 lDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~~~p~~ 312 (1394)
T TIGR00956 233 WDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDR 312 (1394)
T ss_pred EeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCCCCCCC
Confidence 99999999999999999999999874 99999999999888999999999999999999999999999999999999999
Q ss_pred CChHHHHHHhhcCCCCCcCCCchhhhhhhcccccccccCCCCChhhHHHHHHHHHHHHH------HHHHHh-hhcCCCCC
Q 006571 398 MNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRV------AENEKK-KLMAPIPL 470 (640)
Q Consensus 398 ~npad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~~~~~~-~~~~~~~~ 470 (640)
.||+||++++++.+.+... .+.++..+ ... +.+.+.|+++. ...+.. ........
T Consensus 313 ~n~aDfl~~~~~~~~~~~~--~~~e~~~~------------~~~----~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 374 (1394)
T TIGR00956 313 QTTADFLTSLTSPAERQIK--PGYEKKVP------------RTP----QEFETYWRNSPEYAQLMKEIDEYLDRCSESDT 374 (1394)
T ss_pred CChHHHHHhccChhhhhcc--ccccccCC------------CCH----HHHHHHHHcCHHHHHHHHHHHHHhhhccchhh
Confidence 9999999999865432211 00000000 001 11122221110 000000 00000000
Q ss_pred c-------HHHhhhcCCCCCCcCCCHHHHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHH
Q 006571 471 D-------EEIKAKVSSPKRNWGASWIQQYTILFRRGIKE-HRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGLEDQ 542 (640)
Q Consensus 471 ~-------~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~aliiG~lf~~~~~~~~~~~~~~ 542 (640)
. ...+.+.......+..|||+|+.+|++|++++ +|++.+.++|+++.+++|+++|++||+++. ++.++++|
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~-~~~~~~~r 453 (1394)
T TIGR00956 375 KEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPK-NTSDFYSR 453 (1394)
T ss_pred HHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCC-CchhHHHH
Confidence 0 00001112233467899999999999999996 788888899999999999999999999975 56899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCChHHH
Q 006571 543 AGLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPF 622 (640)
Q Consensus 543 ~g~lff~~~~~~~~~~~~~i~~~~~er~v~~rE~~~g~Y~~~ay~lA~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~F 622 (640)
.|++||++++.+|.++ ..+..++.||+||+||+.+++|++++|++|++++|+|+.++.+++|++|+|||+||++++++|
T Consensus 454 ~g~lf~~~~~~~~~~~-~~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~F 532 (1394)
T TIGR00956 454 GGALFFAILFNAFSSL-LEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRF 532 (1394)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHH
Confidence 9999999999888874 557777889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 006571 623 FLSMLTVFLSIVAAQALY 640 (640)
Q Consensus 623 ~~f~l~~~l~~~~~~~l~ 640 (640)
|+|+++++++.++++++|
T Consensus 533 f~f~l~~~l~~~~~~~~~ 550 (1394)
T TIGR00956 533 FFYLLILFICTLAMSHLF 550 (1394)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999988764
No 6
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=4.6e-76 Score=722.52 Aligned_cols=458 Identities=32% Similarity=0.538 Sum_probs=376.0
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CcccEEEECCEeCChhc
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYSKSL 227 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~-~~~G~I~~~G~~~~~~~ 227 (640)
.++++||+|+|+.+ .+++.+|+|||++++|||++||+||||||||||||+|+|+.... +.+|+|.+||+++...+
T Consensus 759 ~l~~~nl~~~~~~~----~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~ 834 (1394)
T TIGR00956 759 IFHWRNLTYEVKIK----KEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSF 834 (1394)
T ss_pred eEEEEeeEEEecCC----CCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhh
Confidence 58999999998421 23568999999999999999999999999999999999976421 35799999999987667
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHH
Q 006571 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (640)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (640)
++.+|||+|++.+++.+||+|||.|++.++.|...+++++.++++++++.+||.++.|+.+|+.. .+|||||||||+||
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~-~~LSgGqrqRl~Ia 913 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPG-EGLNVEQRKRLTIG 913 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCC-CCCCHHHhhHHHHH
Confidence 88999999999999999999999999988776656677778889999999999999999997543 48999999999999
Q ss_pred HHHhhCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCC-eEEEecCh----H
Q 006571 308 NEIIINPS-LLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKG-SLLYFGKA----S 381 (640)
Q Consensus 308 ~aL~~~P~-iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G-~iv~~G~~----~ 381 (640)
++|+.+|+ ||||||||+|||+.++..+++.|++++++|+|||+++|||+..+++.||++++|++| +++|+|++ +
T Consensus 914 ~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~ 993 (1394)
T TIGR00956 914 VELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSH 993 (1394)
T ss_pred HHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccc
Confidence 99999997 999999999999999999999999998889999999999987677889999999997 99999997 6
Q ss_pred HHHHHHHhcCC-CCCCCCChHHHHHHhhcCCCCCcCCCchhhhhhhcccccccccCCCCChhhHHHHHHHHHHHHHHHHH
Q 006571 382 EAMAYFSSIGC-SPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENE 460 (640)
Q Consensus 382 ~~~~~f~~~g~-~~~~~~npad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 460 (640)
++.+||+++|+ +||++.|||||++|+++....... ..+ ..+.+..++..+.. .+....
T Consensus 994 ~~~~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~~~----~~~-------~~~~~~~s~~~~~~--------~~~~~~-- 1052 (1394)
T TIGR00956 994 TIINYFEKHGAPKCPEDANPAEWMLEVIGAAPGAHA----NQD-------YHEVWRNSSEYQAV--------KNELDR-- 1052 (1394)
T ss_pred hHHHHHHhcCCCCCCCCCCHHHHHHHHhhcccccch----hcc-------HHHHHhcCHHHHHH--------HHHHHH--
Confidence 78999999996 999999999999999764321100 000 00001111000000 000000
Q ss_pred HhhhcCCCCCcHHHhhhcCCCCCCcCCCHHHHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHHHHHhcCCCCCChhhH
Q 006571 461 KKKLMAPIPLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKE-HRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGL 539 (640)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~aliiG~lf~~~~~~~~~~~ 539 (640)
...+...... . ........+.+|||+|+++|++|++++ +|++.+.+.|+++.+++|+++|++||++++ ++.++
T Consensus 1053 ---~~~~~~~~~~-~-~~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~-~~~~i 1126 (1394)
T TIGR00956 1053 ---LEAELSKAED-D-NDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGT-SLQGL 1126 (1394)
T ss_pred ---hhcccccCcc-c-cccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCC-CHHHH
Confidence 0000000000 0 001122357899999999999999996 899999999999999999999999999976 57899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCC
Q 006571 540 EDQAGLLFFIAVFWSFFPIFTAIFTFPQERAML-SKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMG 618 (640)
Q Consensus 540 ~~~~g~lff~~~~~~~~~~~~~i~~~~~er~v~-~rE~~~g~Y~~~ay~lA~~l~~lP~~~i~~~if~~i~Y~m~gl~~~ 618 (640)
+++.|++|++++++.+. ....++.|+.||.+| +||+.+|+|++++|++|++++|+|+.++.+++|.+|+|||+||+++
T Consensus 1127 ~~~~g~~f~~~~~~~~~-~~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~ 1205 (1394)
T TIGR00956 1127 QNQMFAVFMATVLFNPL-IQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWN 1205 (1394)
T ss_pred HHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCc
Confidence 99999999988776554 345677888888886 9999999999999999999999999999999999999999999988
Q ss_pred hHH-------HHHHHHHHHHHHHHHHhc
Q 006571 619 AGP-------FFLSMLTVFLSIVAAQAL 639 (640)
Q Consensus 619 ~~~-------F~~f~l~~~l~~~~~~~l 639 (640)
+.. ||+|++++++..++++++
T Consensus 1206 ~~~~~~~~~~f~~~~~~~~~~~~~~~s~ 1233 (1394)
T TIGR00956 1206 ASKTGQVHERGVLFWLLSTMFFLYFSTL 1233 (1394)
T ss_pred ccccccccchHHHHHHHHHHHHHHHHHH
Confidence 866 999999999988887765
No 7
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5.5e-78 Score=698.88 Aligned_cols=454 Identities=31% Similarity=0.537 Sum_probs=381.8
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC-hhcc
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-KSLK 228 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~-~~~~ 228 (640)
..|+|+.|..+.+ ++.+++|+|||+.++||.++||||+||||||||||+|+||...+..+|+|++||.|.. +.++
T Consensus 788 ~~w~dl~~~~~~q----G~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~ 863 (1391)
T KOG0065|consen 788 FYWVDLPYEMPIQ----GGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFA 863 (1391)
T ss_pred EEEEeCCcccccc----ccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhc
Confidence 3444444444322 3567899999999999999999999999999999999999876678999999999998 6789
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHH
Q 006571 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN 308 (640)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~ 308 (640)
|.+|||.|+|.|.+.+||+|.|.|+|.+|.|..++.+++.+.|+++++.++|++++|..||... +|||.+||||++||.
T Consensus 864 R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G-~GLs~eQRKrLTIgV 942 (1391)
T KOG0065|consen 864 RVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPG-SGLSTEQRKRLTIGV 942 (1391)
T ss_pred cccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCC-CCCCHHHhceeeEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999887 999999999999999
Q ss_pred HHhhCC-CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcC-CeEEEecChH----H
Q 006571 309 EIIINP-SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK-GSLLYFGKAS----E 382 (640)
Q Consensus 309 aL~~~P-~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~-G~iv~~G~~~----~ 382 (640)
+|+.|| .||||||||||||+.++..|++.+|++++.|+||+|++|||+.++++.||++++|++ |+.||.|+.. .
T Consensus 943 ELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~ 1022 (1391)
T KOG0065|consen 943 ELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSK 1022 (1391)
T ss_pred EEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHH
Confidence 999999 899999999999999999999999999999999999999999999999999999986 7999999874 5
Q ss_pred HHHHHHhcC-CCCCCCCChHHHHHHhhcCCCCCcCCCchhhhhhhcccccccccCCCCChhhHHHHHHHHHHHHHHHHHH
Q 006571 383 AMAYFSSIG-CSPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEK 461 (640)
Q Consensus 383 ~~~~f~~~g-~~~~~~~npad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 461 (640)
+++||+++| .+||...|||||++|+++..... . ...+.++.+..++. |++..+. -
T Consensus 1023 li~YFes~~~~~~~~~~NPA~~mLevi~~~~~~---------~--~~~D~a~~w~~S~e-----------~k~~~e~--v 1078 (1391)
T KOG0065|consen 1023 LIEYFESIGGVKCISDENPAEWMLEVIGAGAEA---------S--LSVDFAEIWKNSEE-----------YKRNKEL--V 1078 (1391)
T ss_pred HHHHHHhcCCccCCCCCChHHHHHhhccccccc---------c--cCccHHHHHhccHH-----------HHHHHHH--H
Confidence 778999997 89998889999999997643111 0 00111111211111 1111010 1
Q ss_pred hhhcCCCCCcHHHhhhcCCCCCCcCCCHHHHHHHHHHHHHH-HhhcchhHHHHHHHHHHHHHHHHHHhcCCCCCChhhHH
Q 006571 462 KKLMAPIPLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIK-EHRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGLE 540 (640)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~-~~r~~~~~~~r~~~~i~~aliiG~lf~~~~~~~~~~~~ 540 (640)
+.+..+.+. .......+++|..|+|.|++.+++|++. .||+|.+.++|++..++.|+++|+.||+.+ .+..+++
T Consensus 1079 ~~l~~~~~~----~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g-~~~q~lq 1153 (1391)
T KOG0065|consen 1079 KELSQPPPG----FSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVG-HNVQGLQ 1153 (1391)
T ss_pred HHHhcCCcc----CCcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecC-CcHHHHH
Confidence 111122111 1222344567899999999999999997 599999999999999999999999999998 4789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCChH
Q 006571 541 DQAGLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAG 620 (640)
Q Consensus 541 ~~~g~lff~~~~~~~~~~~~~i~~~~~er~v~~rE~~~g~Y~~~ay~lA~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~ 620 (640)
|.+|++|+.+++.+-...-.....+..||.+++||+++|+||+.||++|.+++|+|+.++++++|.+|+|||+|+.+++.
T Consensus 1154 n~m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~ 1233 (1391)
T KOG0065|consen 1154 NAMGAAYMATVFSGPNNNQLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTAS 1233 (1391)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHH
Confidence 99999999887754333223455667899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 006571 621 PFFLSMLTVFLSIVAAQ 637 (640)
Q Consensus 621 ~F~~f~l~~~l~~~~~~ 637 (640)
+|++|++.+++..+...
T Consensus 1234 ~~~~f~~~~~~f~lYf~ 1250 (1391)
T KOG0065|consen 1234 KFFWFLLFMFIFFLYFT 1250 (1391)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99988888877766544
No 8
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=3.9e-76 Score=721.42 Aligned_cols=453 Identities=26% Similarity=0.439 Sum_probs=366.4
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CcccEEEECCEeCChh-ccCcEEEEccCCCCCCCCCH
Q 006571 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYSKS-LKSKIGFVTQDDVLFPHLTV 246 (640)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~-~~~G~I~~~G~~~~~~-~~~~i~yV~Q~~~l~~~lTV 246 (640)
++.||+|||+.|+|||+++|+||||||||||||+|+|++... ..+|+|.+||+++.+. .++.++||+|+|.+++.+||
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV 256 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTV 256 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcH
Confidence 567999999999999999999999999999999999986421 2389999999988542 36789999999999999999
Q ss_pred HHHHHHHHhccCCC-------CccHHHH------------------------HHHHHHHHHHcCCCccccccccCccCCc
Q 006571 247 KETLTYAALLRLPN-------TLTKQQK------------------------EKRAIDVINELGLERCQDTMIGGSFVRG 295 (640)
Q Consensus 247 ~Enl~~~~~~~~~~-------~~~~~~~------------------------~~~v~~~l~~lgL~~~~~t~vg~~~~~~ 295 (640)
+|||.|++.++.+. ..+++++ +..++++++.+||++++||.+|+..+++
T Consensus 257 ~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rg 336 (1470)
T PLN03140 257 KETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRG 336 (1470)
T ss_pred HHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccC
Confidence 99999998765321 1112211 1135778999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCcHHHhccCEEEEEcCCeE
Q 006571 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (640)
Q Consensus 296 LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~i 374 (640)
|||||||||+||++|+.+|++|||||||+|||+.++.++++.|+++++ .|+|||+++|||+.+++++||+|++|++|++
T Consensus 337 lSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~i 416 (1470)
T PLN03140 337 ISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQI 416 (1470)
T ss_pred CCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceE
Confidence 999999999999999999999999999999999999999999999986 5899999999998889999999999999999
Q ss_pred EEecChHHHHHHHHhcCCCCCCCCChHHHHHHhhcCCCCCcCCCchhhhhhhcccccccccCCCCChhhHHHHHHHHHHH
Q 006571 375 LYFGKASEAMAYFSSIGCSPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYET 454 (640)
Q Consensus 375 v~~G~~~~~~~~f~~~g~~~~~~~npad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 454 (640)
+|+|+++++.+||+++|++||++.|||||++++++.+.... ... . ...|......+.+.++|++
T Consensus 417 vy~G~~~~~~~yF~~lGf~cP~~~n~ADFl~~v~s~~~~~~--------~~~--~------~~~p~~~~~~~~~~~~~~~ 480 (1470)
T PLN03140 417 VYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQ--------YWA--D------RNKPYRYISVSEFAERFKS 480 (1470)
T ss_pred EEeCCHHHHHHHHHHcCCCCCCCCChHHHHHHhcCchhhhh--------hhh--c------cCCccccCCHHHHHHHHHh
Confidence 99999999999999999999999999999999986432110 000 0 0000000011223344433
Q ss_pred HHHHHH-HhhhcCCCCCcHHHhhhcCCCCCCcCCCHHHHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHHHHHhcCCC
Q 006571 455 RVAENE-KKKLMAPIPLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKE-HRHDYFSWLRITQVLATAVILGLLWWQSD 532 (640)
Q Consensus 455 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~aliiG~lf~~~~ 532 (640)
...... ..+...+ .+.....+.......|..++|.|+..|++|+++. +|++.+++.|+++.+++|+++|++||+++
T Consensus 481 s~~~~~~~~~~~~~--~~~~~~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~ 558 (1470)
T PLN03140 481 FHVGMQLENELSVP--FDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTE 558 (1470)
T ss_pred cHHHHHHHHHHhhh--hhhhhcccccccCCCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 211100 0000000 0000001111223458899999999999999986 78877888999999999999999999996
Q ss_pred CCC--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 006571 533 SKS--PKGLEDQAGLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVY 610 (640)
Q Consensus 533 ~~~--~~~~~~~~g~lff~~~~~~~~~~~~~i~~~~~er~v~~rE~~~g~Y~~~ay~lA~~l~~lP~~~i~~~if~~i~Y 610 (640)
.+. ..+.+.+.|++||++++++|.+ +..+..++.||+||+|||..++|++++|++|++++|+|+.++.+++|++|+|
T Consensus 559 ~~~~~~~~~~~~~g~lff~~l~~~~~~-~~~l~~~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y 637 (1470)
T PLN03140 559 MHTRNEEDGALYIGALLFSMIINMFNG-FAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITY 637 (1470)
T ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 431 2345677899999988877655 5778899999999999999999999999999999999999999999999999
Q ss_pred hccCCCCChHHHHHHHHHHHHHHHHHHhcC
Q 006571 611 FMAGLRMGAGPFFLSMLTVFLSIVAAQALY 640 (640)
Q Consensus 611 ~m~gl~~~~~~F~~f~l~~~l~~~~~~~l~ 640 (640)
||+||++++++||+|+++++++.++++++|
T Consensus 638 ~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~ 667 (1470)
T PLN03140 638 YSIGFAPEASRFFKQLLLVFLIQQMAAGIF 667 (1470)
T ss_pred hhcCCCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999875
No 9
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=7.5e-68 Score=614.54 Aligned_cols=453 Identities=33% Similarity=0.547 Sum_probs=373.7
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CcccEEEECCEeCChhc-cCcEEEEccCCCCCCCCCH
Q 006571 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYSKSL-KSKIGFVTQDDVLFPHLTV 246 (640)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~-~~~G~I~~~G~~~~~~~-~~~i~yV~Q~~~l~~~lTV 246 (640)
...+|+|+|+-++||+++.++||+||||||||++|+|.+..- ...|+|.+||.+.++.. ++.++|++|+|.|+|.|||
T Consensus 127 ~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTV 206 (1391)
T KOG0065|consen 127 KIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTV 206 (1391)
T ss_pred cceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEE
Confidence 457999999999999999999999999999999999976542 23679999999986533 5779999999999999999
Q ss_pred HHHHHHHHhccCCCC----ccHHHHHH-HHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 006571 247 KETLTYAALLRLPNT----LTKQQKEK-RAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 321 (640)
Q Consensus 247 ~Enl~~~~~~~~~~~----~~~~~~~~-~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDE 321 (640)
+|+|.|+++++.+.. +++.++.+ ..+.+++.+||++|+||.||+...|++||||||||+||.+++.+|+++++||
T Consensus 207 reTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De 286 (1391)
T KOG0065|consen 207 RETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDE 286 (1391)
T ss_pred eehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeec
Confidence 999999999987732 33333333 5678899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHHHHHhcCCCCCCCCCh
Q 006571 322 PTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNP 400 (640)
Q Consensus 322 PTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~~f~~~g~~~~~~~np 400 (640)
+|.|||+.++.++++.|+++++. +.|++++.|||+++++++||+|++|++|+++|+||.+++++||+++|+.||++.++
T Consensus 287 ~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~ 366 (1391)
T KOG0065|consen 287 ITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGT 366 (1391)
T ss_pred ccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCH
Confidence 99999999999999999999864 88999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCcCCCchhhhhhhcccccccccCCCCChhhHHHHHHHHHHHHHH-HHHHhhhcCCCCCcHHHhhhcC
Q 006571 401 AEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVA-ENEKKKLMAPIPLDEEIKAKVS 479 (640)
Q Consensus 401 ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 479 (640)
|||+.++++...... +-. .... ......+.+..++ +.+... .....+... +.+...+.+..
T Consensus 367 ADfLt~vts~k~~~~--~~~-------~~~~---~~~~~~~~ef~~~----~~~s~~~~~l~~~l~~--~~~~~k~~~~a 428 (1391)
T KOG0065|consen 367 ADFLTEVTSKKDQEQ--YWN-------KRSK---PYPYTSVSEFAEY----FLNSEDYAKLKKELSK--PYDKSKKHKAA 428 (1391)
T ss_pred HHHHHHhhcCccccc--ccc-------ccCC---CcccCCHHHHHHH----HhcchhhHHHHHHhcc--hhhhhhccchh
Confidence 999999987211100 000 0000 0000011222222 111100 000011111 11111122333
Q ss_pred CCCCCcCCCHHHHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 006571 480 SPKRNWGASWIQQYTILFRRGIKE-HRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGLEDQAGLLFFIAVFWSFFPI 558 (640)
Q Consensus 480 ~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~aliiG~lf~~~~~~~~~~~~~~~g~lff~~~~~~~~~~ 558 (640)
.....|..++|.|++.|+.|.+.. .||..++..++++.+++|+|+|++||+.+-.+..+.+.+.|++||++++.+|.+
T Consensus 429 l~s~~y~v~~~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~~t~~~~~~~~~~lffsll~~~f~~- 507 (1391)
T KOG0065|consen 429 LVSSKYSVPYWEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPMSTTSGGYSRGGALFFALLFNLFNG- 507 (1391)
T ss_pred hcCCceeccHHHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccCcccccchhhhhHHHHHHHHHHHHh-
Confidence 456678999999999999999986 455556678999999999999999999973455678899999999999988776
Q ss_pred HHHHHHHHhhhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHh
Q 006571 559 FTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQA 638 (640)
Q Consensus 559 ~~~i~~~~~er~v~~rE~~~g~Y~~~ay~lA~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~F~~f~l~~~l~~~~~~~ 638 (640)
++.+....+.||||+|||...+|+++||.++.+++++|+.++..++|.+|+||++||.+++++||.++|+++++..++.+
T Consensus 508 laEi~~~~~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~ 587 (1391)
T KOG0065|consen 508 LAEIALTFQRLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSG 587 (1391)
T ss_pred HHHHHHHHhhcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHH
Confidence 56787788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC
Q 006571 639 LY 640 (640)
Q Consensus 639 l~ 640 (640)
||
T Consensus 588 lF 589 (1391)
T KOG0065|consen 588 LF 589 (1391)
T ss_pred HH
Confidence 86
No 10
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.7e-63 Score=548.17 Aligned_cols=356 Identities=25% Similarity=0.383 Sum_probs=298.4
Q ss_pred HhHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccc-eecchhch
Q 006571 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLK-LELDEVSS 87 (640)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 87 (640)
++.++.||+.|.++.+|+|.+++.+|||+|+++..|..+|.++++....++.|++.+++.+ +.++.+..+ ..+.-+++
T Consensus 314 klS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a~~~f-~~~~~~~~~~~~~siL~~ 392 (716)
T KOG0058|consen 314 KLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVAYGIF-FGSTNLLGNLAVLSILFY 392 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHh-HhHHHHHHhHHHHHHHHh
Confidence 6889999999999999999999999999999999999999999999999999999999999 555555554 45556789
Q ss_pred hhhHhhhhhhhhhhhhccccCCCCcccc----------------ccCCCCCCCCCccccccccCCCCCCCCCC-CCCeeE
Q 006571 88 GAALSRASSASLGLSFSFTGFTMPPDEI----------------ADSKPFSDDDIPEDIEAGTRERPKFQTEP-TLPIYL 150 (640)
Q Consensus 88 g~~~~~~~~~~~g~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l 150 (640)
|+.++..|.++.|.+.+|..|++..... +.++.|+..|..+.++.... ..| .....|
T Consensus 393 Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~G~------~~p~~~~G~I 466 (716)
T KOG0058|consen 393 GGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPLTGT------LAPDHLQGVI 466 (716)
T ss_pred ccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCCCCc------cccccccceE
Confidence 9999999999999999999988765533 23344444444433332211 011 234579
Q ss_pred EEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----h
Q 006571 151 KFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----S 226 (640)
Q Consensus 151 ~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~ 226 (640)
+|+||+|+|+ .+++.+||||+||+|+|||++|||||||+||||+.++|. |+|+| .+|+|.+||+|+++ .
T Consensus 467 eF~~VsFaYP-----~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~-rfY~P-tsG~IllDG~~i~~~~~~~ 539 (716)
T KOG0058|consen 467 EFEDVSFAYP-----TRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLL-RFYDP-TSGRILLDGVPISDINHKY 539 (716)
T ss_pred EEEEeeeecC-----CCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHH-HhcCC-CCCeEEECCeehhhcCHHH
Confidence 9999999985 346789999999999999999999999999999999999 78876 48999999999964 5
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHH
Q 006571 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (640)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (640)
+|++||+|.|||.||.. ||+|||.|+......+.+....+.+.+++++.. +++++||.||.+. ..||||||||+||
T Consensus 540 lr~~Ig~V~QEPvLFs~-sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~--~p~gY~T~VGEkG-~qLSGGQKQRIAI 615 (716)
T KOG0058|consen 540 LRRKIGLVGQEPVLFSG-SIRENIAYGLDNATDEEIEAAAKMANAHEFITN--FPDGYNTVVGEKG-SQLSGGQKQRIAI 615 (716)
T ss_pred HHHHeeeeeccceeecc-cHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHh--CccccccccCCcc-ccccchHHHHHHH
Confidence 78999999999999975 999999998652111112223344556777764 5999999999754 5699999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHH
Q 006571 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (640)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (640)
||||++||.||||||.||+||++++..|.+.|.++.+ ++|||+|.|++++ .+.+|+|+++++|++++.|+|+|+++
T Consensus 616 ARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRLST--V~~Ad~Ivvi~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 616 ARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRLST--VRHADQIVVIDKGRVVEMGTHDELLS 691 (716)
T ss_pred HHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhhhH--hhhccEEEEEcCCeEEecccHHHHhh
Confidence 9999999999999999999999999999999998876 6999999999885 58899999999999999999999975
No 11
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=5.7e-55 Score=424.16 Aligned_cols=218 Identities=33% Similarity=0.578 Sum_probs=198.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC----
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~---- 224 (640)
.|+++||+++| ++..+|+|||++|++||+++|+|||||||||||+||+|. . .+++|+|.++|.++.
T Consensus 2 mi~i~~l~K~f--------g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~L-E-~~~~G~I~i~g~~~~~~~~ 71 (240)
T COG1126 2 MIEIKNLSKSF--------GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGL-E-EPDSGSITVDGEDVGDKKD 71 (240)
T ss_pred eEEEEeeeEEe--------CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCC-c-CCCCceEEECCEeccchhh
Confidence 58999999999 577899999999999999999999999999999999973 3 356999999998763
Q ss_pred -hhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHH
Q 006571 225 -KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (640)
Q Consensus 225 -~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (640)
..+|+++|+|||+.+|||++||.||+.++...- ...++++.++++.++|+.+||.+.+|. ++.+||||||||
T Consensus 72 ~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v--~~~~k~eA~~~A~~lL~~VGL~~ka~~-----yP~qLSGGQqQR 144 (240)
T COG1126 72 ILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV--KKLSKAEAREKALELLEKVGLADKADA-----YPAQLSGGQQQR 144 (240)
T ss_pred HHHHHHhcCeecccccccccchHHHHHHhhhHHH--cCCCHHHHHHHHHHHHHHcCchhhhhh-----CccccCcHHHHH
Confidence 246899999999999999999999999976432 246788889999999999999998875 578999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHH
Q 006571 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (640)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (640)
|+|||||+.+|+++++|||||+|||+...++++.+++|+++|.|.|++||+... +.+.+|||++|++|+|++.|+++++
T Consensus 145 VAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~F-Ar~VadrviFmd~G~iie~g~p~~~ 223 (240)
T COG1126 145 VAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGF-AREVADRVIFMDQGKIIEEGPPEEF 223 (240)
T ss_pred HHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHH-HHHhhheEEEeeCCEEEEecCHHHH
Confidence 999999999999999999999999999999999999999999999999999764 6788999999999999999999887
Q ss_pred H
Q 006571 384 M 384 (640)
Q Consensus 384 ~ 384 (640)
.
T Consensus 224 f 224 (240)
T COG1126 224 F 224 (240)
T ss_pred h
Confidence 4
No 12
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.5e-54 Score=501.49 Aligned_cols=361 Identities=25% Similarity=0.345 Sum_probs=272.8
Q ss_pred hHhHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhch
Q 006571 8 TSLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSS 87 (640)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (640)
++++++.++.-+++-++|||++++.+||.+|+|+..+.++|++-+......+.+++...|...-....+-...-...+|+
T Consensus 196 ~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~gi~~g~~~G~~~G~~~~~~~~~~a~~~Wy 275 (1228)
T KOG0055|consen 196 SKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKFGIKKGLFKGLGLGFTFFLLFASYALAFWY 275 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 56888889999999999999999999999999999999999999988888777666555544111222222334455678
Q ss_pred hhhHhhhhhhhhhhhhccccC----------------CCCccccccCCCCCCCCCccccccccCCCCCCCCCCCCCeeEE
Q 006571 88 GAALSRASSASLGLSFSFTGF----------------TMPPDEIADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLK 151 (640)
Q Consensus 88 g~~~~~~~~~~~g~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 151 (640)
|+.+...+....|.++.-... .+..+..++..++..-+-.+.++.... ... ........++
T Consensus 276 G~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~~-~~~--~~~~~~g~ie 352 (1228)
T KOG0055|consen 276 GSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETIDRKPSIDPYSK-GGR--VLSSIKGEIE 352 (1228)
T ss_pred HHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHHhcCCCCCCcccc-cCC--cccccccceE
Confidence 877777654444443332211 222223333333332222222222210 010 1122345799
Q ss_pred EEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC----hhc
Q 006571 152 FTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSL 227 (640)
Q Consensus 152 ~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~----~~~ 227 (640)
|+||+|+|+ .+++.+||+|+||.|++|+.+||||||||||||++++|. |+++|. +|+|++||.|+. +.+
T Consensus 353 f~nV~FsYP-----sRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~-RfydP~-~G~V~idG~di~~~~~~~l 425 (1228)
T KOG0055|consen 353 FRNVCFSYP-----SRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLA-RFYDPT-SGEVLIDGEDIRNLNLKWL 425 (1228)
T ss_pred EEEEEecCC-----CCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHH-HhcCCC-CceEEEcCccchhcchHHH
Confidence 999999985 345788999999999999999999999999999999999 577764 899999999986 367
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHH
Q 006571 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (640)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (640)
|++||.|+|+|.||. .||+|||.|+......+.+.+..+.+.+++++.. |++.+||.+|.+.+. ||||||||+|||
T Consensus 426 r~~iglV~QePvlF~-~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~--lp~g~~T~vge~g~q-LSGGQKQRIAIA 501 (1228)
T KOG0055|consen 426 RSQIGLVSQEPVLFA-TTIRENIRYGKPDATREEIEEAAKAANAHDFILK--LPDGYDTLVGERGVQ-LSGGQKQRIAIA 501 (1228)
T ss_pred HhhcCeeeechhhhc-ccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHh--hHHhhcccccCCCCC-CChHHHHHHHHH
Confidence 999999999999996 5999999997422111111122233345566654 588999999987654 999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHH
Q 006571 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (640)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (640)
|||++||+|||||||||+||++++..+.+.|.+.. .|+|.|+++|++++ .+.+|+|++|++|+|++.|+|+|+++
T Consensus 502 Ralv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~-~grTTivVaHRLSt--IrnaD~I~v~~~G~IvE~G~h~ELi~ 576 (1228)
T KOG0055|consen 502 RALVRNPKILLLDEATSALDAESERVVQEALDKAS-KGRTTIVVAHRLST--IRNADKIAVMEEGKIVEQGTHDELIA 576 (1228)
T ss_pred HHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh-cCCeEEEEeeehhh--hhccCEEEEEECCEEEEecCHHHHHh
Confidence 99999999999999999999999999999998865 49999999999885 46799999999999999999999985
No 13
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1e-51 Score=408.79 Aligned_cols=233 Identities=30% Similarity=0.573 Sum_probs=206.5
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
+|+|+|||+.| +++.+++|+||+|++||+++++|||||||||+||+|.+ +.+| ++|+|++||+++..
T Consensus 1 MI~~~nvsk~y--------~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINr-Liep-t~G~I~i~g~~i~~~d~ 70 (309)
T COG1125 1 MIEFENVSKRY--------GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINR-LIEP-TSGEILIDGEDISDLDP 70 (309)
T ss_pred Cceeeeeehhc--------CCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhc-ccCC-CCceEEECCeecccCCH
Confidence 47999999998 46789999999999999999999999999999999995 5544 58999999999864
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHH
Q 006571 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (640)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (640)
++|++||||-|+-.|||++||.|||.+...+. ..++++.+++++++++.+||+.. ...++++++|||||+|||
T Consensus 71 ~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~---~~~~RyP~eLSGGQQQRV 144 (309)
T COG1125 71 VELRRKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPS---EYADRYPHELSGGQQQRV 144 (309)
T ss_pred HHHHHhhhhhhhhcccCCCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHH---HHhhcCchhcCcchhhHH
Confidence 68999999999999999999999999876653 46788899999999999999742 123467899999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHH
Q 006571 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (640)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (640)
.+||||+.+|+||++|||+++|||.++.++.+.++++.++ |+|||++|||.. ++++++|||++|++|+++..++|+++
T Consensus 145 Gv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid-EA~kLadri~vm~~G~i~Q~~~P~~i 223 (309)
T COG1125 145 GVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID-EALKLADRIAVMDAGEIVQYDTPDEI 223 (309)
T ss_pred HHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH-HHHhhhceEEEecCCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999865 999999999965 68899999999999999999999998
Q ss_pred HHHHHhcCCCCCCCCChH-HHHHHhhcCC
Q 006571 384 MAYFSSIGCSPQIAMNPA-EFLLDLANGN 411 (640)
Q Consensus 384 ~~~f~~~g~~~~~~~npa-d~~~~~~~~~ 411 (640)
+. ||+ ||+.+....+
T Consensus 224 l~-------------~Pan~FV~~f~g~~ 239 (309)
T COG1125 224 LA-------------NPANDFVEDFFGES 239 (309)
T ss_pred Hh-------------CccHHHHHHHhccc
Confidence 73 554 5666655443
No 14
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.8e-51 Score=415.72 Aligned_cols=222 Identities=28% Similarity=0.459 Sum_probs=199.3
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
+|+++||++.|..+ ..+...+|+|||++|++||+++|+|.||||||||+++|.+ +.. |++|+|.+||+++..
T Consensus 1 mI~l~~vsK~~~~~---~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~-Le~-PtsG~v~v~G~di~~l~~ 75 (339)
T COG1135 1 MIELENVSKTFGQT---GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINL-LER-PTSGSVFVDGQDLTALSE 75 (339)
T ss_pred CeEEEeeeeeeccC---CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhc-cCC-CCCceEEEcCEecccCCh
Confidence 48999999998432 1234579999999999999999999999999999999996 444 569999999988752
Q ss_pred ----hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHH
Q 006571 226 ----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (640)
Q Consensus 226 ----~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 301 (640)
..|++||++||++.|+...||.||+.|+..+. ..++++.++++.++++.+||++..+. ++.+||||||
T Consensus 76 ~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeia---g~~k~ei~~RV~elLelVgL~dk~~~-----yP~qLSGGQK 147 (339)
T COG1135 76 AELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELA---GVPKAEIKQRVAELLELVGLSDKADR-----YPAQLSGGQK 147 (339)
T ss_pred HHHHHHHhhccEEeccccccccchHHhhhhhhHhhc---CCCHHHHHHHHHHHHHHcCChhhhcc-----CchhcCcchh
Confidence 46889999999999999999999999998775 36789999999999999999987764 5789999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecCh
Q 006571 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (640)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (640)
|||+|||||+.+|+|||+|||||+|||.+...|+++|+++.++ |.||+++||++. .+.++||||.+|++|++++.|+.
T Consensus 148 QRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~-Vvk~ic~rVavm~~G~lvE~G~v 226 (339)
T COG1135 148 QRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEME-VVKRICDRVAVLDQGRLVEEGTV 226 (339)
T ss_pred hHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHH-HHHHHhhhheEeeCCEEEEeccH
Confidence 9999999999999999999999999999999999999999765 999999999964 58889999999999999999999
Q ss_pred HHHH
Q 006571 381 SEAM 384 (640)
Q Consensus 381 ~~~~ 384 (640)
.++.
T Consensus 227 ~~vF 230 (339)
T COG1135 227 SEVF 230 (339)
T ss_pred HHhh
Confidence 8875
No 15
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1e-52 Score=489.21 Aligned_cols=354 Identities=24% Similarity=0.359 Sum_probs=283.5
Q ss_pred HhHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchh
Q 006571 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSG 88 (640)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 88 (640)
+-+++.++...++...|.|..++.+||++++.+.--...|.+.+.+....+.++++-.|.-.-.+.+...-......++|
T Consensus 834 ~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~~~~~i~gl~f~~sqs~~~~~~A~~f~~G 913 (1228)
T KOG0055|consen 834 GFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSFKRGLISGLGFGFSQSLLFFVYALSFWYG 913 (1228)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566678899999999999999999999999998888888888777666666665555442223333333344444555
Q ss_pred hhHh-----------------hhhhhhhhhhhccccCCCCccccccCCCCCCCCCccccccccCCCCCCCCCCCCCeeEE
Q 006571 89 AALS-----------------RASSASLGLSFSFTGFTMPPDEIADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLK 151 (640)
Q Consensus 89 ~~~~-----------------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 151 (640)
+.++ .+++...+...++.+ +..++..++...|...|-.+.++...+ .....+.....|+
T Consensus 914 ~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~P-d~~ka~~Aa~~iF~i~dr~~~i~~~~~---~~~~~~~~~G~I~ 989 (1228)
T KOG0055|consen 914 ARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAP-DISKAKIAAGSIFEILDRKPTIDPDST---SGGKLPNVKGDIE 989 (1228)
T ss_pred HHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCc-HHHHHHHHHHHHHHHhcCCCCCCCCCC---CCCccccceeEEE
Confidence 5554 455778888888888 777777777777666654443433221 1111233456799
Q ss_pred EEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hc
Q 006571 152 FTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SL 227 (640)
Q Consensus 152 ~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~~ 227 (640)
++||+|+|| .+++.+||+|+|++|++|+.+||||||||||||.+.+|. |+|+|. +|.|.+||.|+++ .+
T Consensus 990 ~~~V~F~YP-----sRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLe-RfYdp~-~G~V~IDg~dik~lnl~~L 1062 (1228)
T KOG0055|consen 990 FRNVSFAYP-----TRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLE-RFYDPD-AGKVKIDGVDIKDLNLKWL 1062 (1228)
T ss_pred EeeeEeeCC-----CCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHH-HhcCCC-CCeEEECCcccccCCHHHH
Confidence 999999985 457889999999999999999999999999999999999 788764 8999999999863 68
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHH-----HHHHHHHHHHHcCCCccccccccCccCCcCCHHHHH
Q 006571 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQ-----KEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (640)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~-----~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (640)
|+++|.|.|+|.||.. |++|||.|+.. + .+.++ +.+.+++++. +|++++||.+|++. .+|||||||
T Consensus 1063 R~~i~lVsQEP~LF~~-TIrENI~YG~~----~-vs~~eIi~Aak~ANaH~FI~--sLP~GyDT~vGerG-~QLSGGQKQ 1133 (1228)
T KOG0055|consen 1063 RKQIGLVSQEPVLFNG-TIRENIAYGSE----E-VSEEEIIEAAKLANAHNFIS--SLPQGYDTRVGERG-VQLSGGQKQ 1133 (1228)
T ss_pred HHhcceeccCchhhcc-cHHHHHhccCC----C-CCHHHHHHHHHHhhhHHHHh--cCcCcccCccCccc-CcCCchHHH
Confidence 9999999999999965 99999999821 1 33333 3445666664 67999999999765 569999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHH
Q 006571 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (640)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (640)
|+||||||++||+||||||.||+||+++++.+.+.|.+.. .|+|.|+++|++++ .+.||.|+|+++|+|++.|+|++
T Consensus 1134 RIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~-~gRT~IvIAHRLST--IqnaD~I~Vi~~G~VvE~GtH~~ 1210 (1228)
T KOG0055|consen 1134 RIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM-EGRTTIVIAHRLST--IQNADVIAVLKNGKVVEQGTHDE 1210 (1228)
T ss_pred HHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh-cCCcEEEEecchhh--hhcCCEEEEEECCEEEecccHHH
Confidence 9999999999999999999999999999999999999875 49999999999985 58899999999999999999999
Q ss_pred HHH
Q 006571 383 AMA 385 (640)
Q Consensus 383 ~~~ 385 (640)
+++
T Consensus 1211 L~~ 1213 (1228)
T KOG0055|consen 1211 LLA 1213 (1228)
T ss_pred HHh
Confidence 986
No 16
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=4.4e-52 Score=476.47 Aligned_cols=362 Identities=24% Similarity=0.336 Sum_probs=273.7
Q ss_pred hHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchhh
Q 006571 10 LARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGA 89 (640)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 89 (640)
..++..+.-++..+...|.+.+.+|+++.+.++....+..++..+....+.+..--......-...+|.-..+.-++.|+
T Consensus 320 ~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~v~iL~~G~ 399 (709)
T COG2274 320 KTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLILWFGA 399 (709)
T ss_pred HHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566677889999999999999999999999999998887777653333333333345555666777889999
Q ss_pred hHhhhhhhhhhhhhccccCCC----CccccccCCC------CCCCCCccccccccC-CCCC-CCCCCCCCeeEEEEeEEE
Q 006571 90 ALSRASSASLGLSFSFTGFTM----PPDEIADSKP------FSDDDIPEDIEAGTR-ERPK-FQTEPTLPIYLKFTDVTY 157 (640)
Q Consensus 90 ~~~~~~~~~~g~~~~~~~~~~----~~~~~~~~~~------~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~l~~~~vs~ 157 (640)
.++..+..+.|.+++|..+.- |.......-. ....++.+.+..... +... ....+.....++|+||+|
T Consensus 400 ~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~~~~~~~~~~g~I~~~nvsf 479 (709)
T COG2274 400 ILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDKTLIHLPKLQGEIEFENVSF 479 (709)
T ss_pred HHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccccccccCceEEEEEEEE
Confidence 999999999999999985432 2222111000 000001111111111 0011 123344556899999999
Q ss_pred EEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hccCcEEE
Q 006571 158 KVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGF 233 (640)
Q Consensus 158 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~i~y 233 (640)
+|. ..+.++|+|+|++|+|||.+||+|+||||||||+|+|+|. +. |.+|+|.+||.|+.+ .+|++|||
T Consensus 480 ~y~------~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gl-y~-p~~G~I~~dg~dl~~i~~~~lR~~ig~ 551 (709)
T COG2274 480 RYG------PDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGL-YK-PQQGRILLDGVDLNDIDLASLRRQVGY 551 (709)
T ss_pred EeC------CCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcC-CC-CCCceEEECCEeHHhcCHHHHHhheeE
Confidence 993 2334799999999999999999999999999999999985 44 458999999999853 68999999
Q ss_pred EccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhC
Q 006571 234 VTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIIN 313 (640)
Q Consensus 234 V~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~ 313 (640)
|+||+.+|.. |++||+.++......+.+-.+...+.+++.+. .++.++||.+|+. ..+||||||||++|||||+++
T Consensus 552 V~Q~~~Lf~g-SI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~--~lP~gy~t~v~E~-G~~LSGGQrQrlalARaLl~~ 627 (709)
T COG2274 552 VLQDPFLFSG-SIRENIALGNPEATDEEIIEAAQLAGAHEFIE--NLPMGYDTPVGEG-GANLSGGQRQRLALARALLSK 627 (709)
T ss_pred EcccchhhcC-cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHH--hcccccccccccC-CCCCCHHHHHHHHHHHHhccC
Confidence 9999999975 99999998743211011112222334556665 4588999999865 467999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHHH
Q 006571 314 PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAY 386 (640)
Q Consensus 314 P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~~ 386 (640)
|+||+||||||+||+.++..|.+.|.++.. |+|+|+++|+++. .+.||||+||++|+|+++|+|+|+++.
T Consensus 628 P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~-~~T~I~IaHRl~t--i~~adrIiVl~~Gkiv~~gs~~ell~~ 697 (709)
T COG2274 628 PKILLLDEATSALDPETEAIILQNLLQILQ-GRTVIIIAHRLST--IRSADRIIVLDQGKIVEQGSHEELLAQ 697 (709)
T ss_pred CCEEEEeCcccccCHhHHHHHHHHHHHHhc-CCeEEEEEccchH--hhhccEEEEccCCceeccCCHHHHHHh
Confidence 999999999999999999999999999865 8999999999874 688999999999999999999999864
No 17
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=5.4e-50 Score=394.88 Aligned_cols=221 Identities=32% Similarity=0.522 Sum_probs=199.6
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (640)
..|++++|+++| +++.||+|||++|++||+++||||||||||||||+|.|.+. +++|+|+++|+++.+
T Consensus 7 ~~I~vr~v~~~f--------G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~--P~~GeI~i~G~~i~~ls 76 (263)
T COG1127 7 PLIEVRGVTKSF--------GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR--PDKGEILIDGEDIPQLS 76 (263)
T ss_pred ceEEEeeeeeec--------CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCC--CCCCeEEEcCcchhccC
Confidence 369999999998 68899999999999999999999999999999999999764 568999999999742
Q ss_pred -----hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHH
Q 006571 226 -----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (640)
Q Consensus 226 -----~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 300 (640)
.+|+++|++||+-.||..+||+||+.|..+-. ..++++..++.+..-|+.+||... +++.++.+|||||
T Consensus 77 ~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~--~~lp~~~i~~lv~~KL~~VGL~~~----~~~~~PsELSGGM 150 (263)
T COG1127 77 EEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREH--TKLPESLIRELVLMKLELVGLRGA----AADLYPSELSGGM 150 (263)
T ss_pred HHHHHHHHhheeEEeeccccccccchhHhhheehHhh--ccCCHHHHHHHHHHHHHhcCCChh----hhhhCchhhcchH
Confidence 46889999999999999999999999986543 346788888888888999999765 1234688999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecC
Q 006571 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (640)
Q Consensus 301 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (640)
+||++|||||+.||+|||+||||+||||.++..+.++++++.+. |.|+|++|||..+ ++..|||+++|.+|+|++.|+
T Consensus 151 ~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s-~~~i~Drv~~L~~gkv~~~Gt 229 (263)
T COG1127 151 RKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDS-LLTIADRVAVLADGKVIAEGT 229 (263)
T ss_pred HHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHH-HHhhhceEEEEeCCEEEEeCC
Confidence 99999999999999999999999999999999999999999876 9999999999764 889999999999999999999
Q ss_pred hHHHHH
Q 006571 380 ASEAMA 385 (640)
Q Consensus 380 ~~~~~~ 385 (640)
++++.+
T Consensus 230 ~~el~~ 235 (263)
T COG1127 230 PEELLA 235 (263)
T ss_pred HHHHHh
Confidence 999864
No 18
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.4e-49 Score=416.60 Aligned_cols=222 Identities=34% Similarity=0.582 Sum_probs=199.6
Q ss_pred eEEEEeEEEEEeeccccccc-cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 006571 149 YLKFTDVTYKVILKGMTSSE-EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (640)
.++++||+++| + ++.+|+||||+|++|+++||+||||||||||+|+|+|... +++|+|.++|.+..+
T Consensus 4 ~i~~~~l~k~~--------~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~--p~~G~i~i~G~~~~~~~ 73 (293)
T COG1131 4 VIEVRNLTKKY--------GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK--PTSGEILVLGYDVVKEP 73 (293)
T ss_pred eeeecceEEEe--------CCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEEcCEeCccCH
Confidence 57899999998 4 5789999999999999999999999999999999999764 468999999998754
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHH
Q 006571 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (640)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (640)
..++++|||+|++.+++.+||+|||.|.+.++.+. ....+++++++++.+||.+..++ .+++||+|||||+
T Consensus 74 ~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~---~~~~~~~~~~~l~~~~L~~~~~~-----~~~~lS~G~kqrl 145 (293)
T COG1131 74 AKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLS---KEEAEERIEELLELFGLEDKANK-----KVRTLSGGMKQRL 145 (293)
T ss_pred HHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCC---hhHHHHHHHHHHHHcCCchhhCc-----chhhcCHHHHHHH
Confidence 56889999999999999999999999999887532 24566789999999999874443 4578999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCC-CEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHH
Q 006571 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG-KTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (640)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g-~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (640)
+||+||+.+|++|||||||+||||.++.++.+.|++++++| +||+++||++. ++..+||+|++|++|++++.|+++++
T Consensus 146 ~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~v~il~~G~~~~~g~~~~l 224 (293)
T COG1131 146 SIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDRVIILNDGKIIAEGTPEEL 224 (293)
T ss_pred HHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999999887 89999999976 57888999999999999999999998
Q ss_pred HHHHHh
Q 006571 384 MAYFSS 389 (640)
Q Consensus 384 ~~~f~~ 389 (640)
...+..
T Consensus 225 ~~~~~~ 230 (293)
T COG1131 225 KEKFGG 230 (293)
T ss_pred HHhhcc
Confidence 776653
No 19
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=8.3e-50 Score=405.01 Aligned_cols=220 Identities=31% Similarity=0.481 Sum_probs=194.1
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC----
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~---- 224 (640)
.|+++||++.| +++++|+|+||+|++||+++|+||||||||||||+|+|.+. +.+|+|.++|+++.
T Consensus 2 ~L~~~~ls~~y--------~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~--p~~G~V~l~g~~i~~~~~ 71 (258)
T COG1120 2 MLEVENLSFGY--------GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK--PKSGEVLLDGKDIASLSP 71 (258)
T ss_pred eeEEEEEEEEE--------CCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC--CCCCEEEECCCchhhcCH
Confidence 58999999999 46789999999999999999999999999999999998664 56899999999985
Q ss_pred hhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCC-CccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHH
Q 006571 225 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN-TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (640)
Q Consensus 225 ~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (640)
+++.+++|||||.+.....+||+|-+.++..-+... ....+++++.+++.|+.+|+.+.++.. +.+||||||||
T Consensus 72 kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~-----~~~LSGGerQr 146 (258)
T COG1120 72 KELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRP-----VDELSGGERQR 146 (258)
T ss_pred HHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCc-----ccccChhHHHH
Confidence 356789999999988777899999999985322111 112344556799999999999988865 46899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHH
Q 006571 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (640)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (640)
|.|||||+++|+||+||||||.||...+.++++.++++++ +|+|||+++||++. +.++||++++|++|+++..|+|++
T Consensus 147 v~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~-A~ryad~~i~lk~G~i~a~G~p~e 225 (258)
T COG1120 147 VLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNL-AARYADHLILLKDGKIVAQGTPEE 225 (258)
T ss_pred HHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEEECCeEEeecCcch
Confidence 9999999999999999999999999999999999999985 59999999999875 679999999999999999999988
Q ss_pred HH
Q 006571 383 AM 384 (640)
Q Consensus 383 ~~ 384 (640)
++
T Consensus 226 vl 227 (258)
T COG1120 226 VL 227 (258)
T ss_pred hc
Confidence 75
No 20
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-49 Score=418.86 Aligned_cols=233 Identities=27% Similarity=0.473 Sum_probs=207.0
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (640)
..++++||+++| ++..+|+|+|++|++||+++|+|||||||||||++|+|.. . +++|+|.++|+++..
T Consensus 4 ~~l~i~~v~k~y--------g~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe-~-p~~G~I~l~G~~i~~lp 73 (352)
T COG3842 4 PALEIRNVSKSF--------GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFE-Q-PSSGEILLDGEDITDVP 73 (352)
T ss_pred ceEEEEeeeeec--------CCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCC-C-CCCceEEECCEECCCCC
Confidence 369999999998 4678999999999999999999999999999999999954 3 569999999999964
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHH
Q 006571 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (640)
Q Consensus 226 ~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (640)
..+|.||+|||+..|||+|||+||+.|+...+ ....+++.++++.++++.++|++..+. ++.+|||||||||+
T Consensus 74 p~kR~ig~VFQ~YALFPHltV~~NVafGLk~~--~~~~~~~i~~rv~e~L~lV~L~~~~~R-----~p~qLSGGQqQRVA 146 (352)
T COG3842 74 PEKRPIGMVFQSYALFPHMTVEENVAFGLKVR--KKLKKAEIKARVEEALELVGLEGFADR-----KPHQLSGGQQQRVA 146 (352)
T ss_pred hhhcccceeecCcccCCCCcHHHHhhhhhhhc--CCCCHHHHHHHHHHHHHHcCchhhhhh-----ChhhhChHHHHHHH
Confidence 45889999999999999999999999998743 334567788999999999999987664 56899999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHH
Q 006571 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (640)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (640)
|||||+.+|++||||||.|+||..-+.++...|+++.++ |.|.|++|||.. +...++|||++|++|+|...|+|+|+.
T Consensus 147 LARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe-EAl~msDrI~Vm~~G~I~Q~gtP~eiY 225 (352)
T COG3842 147 LARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQE-EALAMSDRIAVMNDGRIEQVGTPEEIY 225 (352)
T ss_pred HHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHhhhccceEEccCCceeecCCHHHHh
Confidence 999999999999999999999999999999999999764 999999999965 678999999999999999999999984
Q ss_pred HHHHhcCCCCCCCCChHHHHHH
Q 006571 385 AYFSSIGCSPQIAMNPAEFLLD 406 (640)
Q Consensus 385 ~~f~~~g~~~~~~~npad~~~~ 406 (640)
..|...-.|+|+-+
T Consensus 226 --------~~P~~~fVA~FiG~ 239 (352)
T COG3842 226 --------ERPATRFVADFIGE 239 (352)
T ss_pred --------hCcchHHHHHHhCc
Confidence 34555555777654
No 21
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.5e-49 Score=393.88 Aligned_cols=204 Identities=32% Similarity=0.513 Sum_probs=184.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhcc
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~ 228 (640)
.+++++|++.| +...+|+|||++|.+||+++|+||||||||||||+|+|... +++|+|.++|+++ ....
T Consensus 3 ~l~i~~v~~~f--------~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~--p~~G~V~~~g~~v-~~p~ 71 (248)
T COG1116 3 LLEIEGVSKSF--------GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK--PTSGEVLLDGRPV-TGPG 71 (248)
T ss_pred eEEEEeeEEEe--------CceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCccc-CCCC
Confidence 58999999998 34789999999999999999999999999999999999653 5689999999998 4556
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHH
Q 006571 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN 308 (640)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~ 308 (640)
..++||||++.|+|.+||.||+.++...+. .++++.++++.++|+.+||.+..|. ++++|||||||||+|||
T Consensus 72 ~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~---~~~~e~~~~a~~~L~~VgL~~~~~~-----~P~qLSGGMrQRVaiAR 143 (248)
T COG1116 72 PDIGYVFQEDALLPWLTVLDNVALGLELRG---KSKAEARERAKELLELVGLAGFEDK-----YPHQLSGGMRQRVAIAR 143 (248)
T ss_pred CCEEEEeccCcccchhhHHhhheehhhccc---cchHhHHHHHHHHHHHcCCcchhhc-----CccccChHHHHHHHHHH
Confidence 789999999999999999999999987642 4567777899999999999987764 67899999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCcHHHhccCEEEEEcCC
Q 006571 309 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKG 372 (640)
Q Consensus 309 aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~tH~~~~~i~~~~D~i~vL~~G 372 (640)
||+.+|+||+||||+++||+.++..+.+.|.++++ .++||+++|||.. ++..++|||++|.++
T Consensus 144 AL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~-EAv~LsdRivvl~~~ 207 (248)
T COG1116 144 ALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVD-EAVYLADRVVVLSNR 207 (248)
T ss_pred HHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHhhhCEEEEecCC
Confidence 99999999999999999999999999999999975 4899999999976 577899999999984
No 22
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.5e-49 Score=414.58 Aligned_cols=218 Identities=28% Similarity=0.487 Sum_probs=199.0
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--h
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--~ 226 (640)
.|+++||++.| ++..+|+|+|++|++||+++|+||||||||||||+|+|... +++|+|.++|++++. .
T Consensus 3 ~i~l~~v~K~y--------g~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~--~~~G~I~i~g~~vt~l~P 72 (338)
T COG3839 3 ELELKNVRKSF--------GSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE--PTSGEILIDGRDVTDLPP 72 (338)
T ss_pred EEEEeeeEEEc--------CCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCCh
Confidence 58999999998 23239999999999999999999999999999999999543 569999999999874 3
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHH
Q 006571 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (640)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (640)
.+|.||+|||+..|||+|||+|||.|+.+.+ ..++++.+++++++.+.++|.+..|. ++++|||||||||+|
T Consensus 73 ~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~---~~~k~ei~~rV~eva~~L~l~~lL~r-----~P~~LSGGQrQRVAl 144 (338)
T COG3839 73 EKRGIAMVFQNYALYPHMTVYENIAFGLKLR---GVPKAEIDKRVKEVAKLLGLEHLLNR-----KPLQLSGGQRQRVAL 144 (338)
T ss_pred hHCCEEEEeCCccccCCCcHHHHhhhhhhhC---CCchHHHHHHHHHHHHHcCChhHHhc-----CcccCChhhHHHHHH
Confidence 4689999999999999999999999998765 45788899999999999999998876 468999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHH
Q 006571 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (640)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (640)
||||+++|+++|||||+|+||+..+..+...|+++.++ |.|+|++|||.. ++..++|||++|++|+|...|+|.|+..
T Consensus 145 aRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~-EAmtladri~Vm~~G~i~Q~g~p~ely~ 223 (338)
T COG3839 145 ARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV-EAMTLADRIVVMNDGRIQQVGTPLELYE 223 (338)
T ss_pred HHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHH-HHHhhCCEEEEEeCCeeeecCChHHHhh
Confidence 99999999999999999999999999999999999865 899999999964 6889999999999999999999999853
No 23
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.1e-48 Score=389.76 Aligned_cols=210 Identities=35% Similarity=0.579 Sum_probs=181.2
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (640)
++++||++.|..++ ....+|++|||+|++||++||+|||||||||||++|.|... | ++|.|.++|+++..
T Consensus 2 i~~~~v~k~y~~~~----~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~-p-t~G~v~i~g~d~~~l~~~ 75 (226)
T COG1136 2 IELKNVSKIYGLGG----EKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDK-P-TSGEVLINGKDLTKLSEK 75 (226)
T ss_pred cEEeeeEEEeccCC----cceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccC-C-CCceEEECCEEcCcCCHH
Confidence 67899999984322 23679999999999999999999999999999999998543 4 69999999988752
Q ss_pred ---hc-cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHH
Q 006571 226 ---SL-KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (640)
Q Consensus 226 ---~~-~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 301 (640)
.+ +++||||||+..|+|.+||+||+.+++.+.. .+.....++++++++.+||.+..+. .++.+||||||
T Consensus 76 ~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~---~~~~~~~~~~~~l~~~lgl~~~~~~----~~p~eLSGGqq 148 (226)
T COG1136 76 ELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAG---KSAGRRKRAAEELLEVLGLEDRLLK----KKPSELSGGQQ 148 (226)
T ss_pred HHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcC---CChhHHHHHHHHHHHhcCChhhhcc----CCchhcCHHHH
Confidence 23 4679999999999999999999998775542 2333567778899999999866552 34689999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeE
Q 006571 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (640)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~i 374 (640)
|||+|||||+.+|+|||.||||.+||+.+...|+++|++++++ |+|||++|||+. +...|||++.|.+|++
T Consensus 149 QRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~--lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 149 QRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPE--LAKYADRVIELKDGKI 220 (226)
T ss_pred HHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHH--HHHhCCEEEEEeCCee
Confidence 9999999999999999999999999999999999999999865 999999999964 6789999999999994
No 24
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-48 Score=393.21 Aligned_cols=219 Identities=31% Similarity=0.557 Sum_probs=189.5
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhc
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (640)
..|+++|+++.| +.+++|+||||+|++|++++|+||||||||||+|+|.|.+. +.+|+|.++|++..+..
T Consensus 3 ~~i~v~nl~v~y--------~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~--p~~G~i~~~g~~~~~~~ 72 (254)
T COG1121 3 PMIEVENLTVSY--------GNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK--PSSGEIKIFGKPVRKRR 72 (254)
T ss_pred cEEEEeeeEEEE--------CCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc--CCcceEEEccccccccc
Confidence 369999999999 22269999999999999999999999999999999999764 56899999999876543
Q ss_pred -cCcEEEEccC---CCCCCCCCHHHHHHHHHhccCC--CCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHH
Q 006571 228 -KSKIGFVTQD---DVLFPHLTVKETLTYAALLRLP--NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (640)
Q Consensus 228 -~~~i~yV~Q~---~~l~~~lTV~Enl~~~~~~~~~--~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 301 (640)
+.+||||||. +.-|| +||+|.+..+...+.. ... .+.+++.++++|+.+|+.+..|..+| +|||||+
T Consensus 73 ~~~~IgYVPQ~~~~d~~fP-~tV~d~V~~g~~~~~g~~~~~-~~~d~~~v~~aL~~Vgm~~~~~r~i~-----~LSGGQ~ 145 (254)
T COG1121 73 KRLRIGYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGWFRRL-NKKDKEKVDEALERVGMEDLRDRQIG-----ELSGGQK 145 (254)
T ss_pred cCCeEEEcCcccccCCCCC-cCHHHHHHccCcccccccccc-cHHHHHHHHHHHHHcCchhhhCCccc-----ccCcHHH
Confidence 4689999995 44577 6999999987433321 112 23447789999999999999998765 8999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChH
Q 006571 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (640)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (640)
|||.|||||+.+|++|+|||||+|+|+.++..|+++|++++++|+||++++||+.. +.++||+|+.| +++++..|+++
T Consensus 146 QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~-v~~~~D~vi~L-n~~~~~~G~~~ 223 (254)
T COG1121 146 QRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGL-VMAYFDRVICL-NRHLIASGPPE 223 (254)
T ss_pred HHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHH-hHhhCCEEEEE-cCeeEeccChh
Confidence 99999999999999999999999999999999999999999889999999999875 78999999999 57789999999
Q ss_pred HHHH
Q 006571 382 EAMA 385 (640)
Q Consensus 382 ~~~~ 385 (640)
++..
T Consensus 224 ~~~~ 227 (254)
T COG1121 224 EVLT 227 (254)
T ss_pred hccC
Confidence 8754
No 25
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-48 Score=384.51 Aligned_cols=223 Identities=28% Similarity=0.489 Sum_probs=194.9
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
+|+++||+..|+ +++++|+||||+|++||++||+|||||||||||++|+|. .+ +++|+|.+||.++..
T Consensus 3 ~i~~~nl~k~yp-------~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl-~d-~t~G~i~~~g~~i~~~~~ 73 (258)
T COG3638 3 MIEVKNLSKTYP-------GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGL-VD-PTSGEILFNGVQITKLKG 73 (258)
T ss_pred eEEEeeeeeecC-------CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcc-cC-CCcceEEecccchhccch
Confidence 699999999984 467899999999999999999999999999999999984 43 468999999987642
Q ss_pred ----hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCC-----CccHHHHHHHHHHHHHHcCCCccccccccCccCCcC
Q 006571 226 ----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN-----TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296 (640)
Q Consensus 226 ----~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~L 296 (640)
.+|++|||++|++.|.+.+||.+|+..+...+.+. .+..++.+..+.+.|+.+|+.+.+-++. ..|
T Consensus 74 k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra-----~~L 148 (258)
T COG3638 74 KELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRA-----STL 148 (258)
T ss_pred HHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHh-----ccC
Confidence 46889999999999999999999999876443321 1223455667889999999988776654 589
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCcHHHhccCEEEEEcCCeEE
Q 006571 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (640)
Q Consensus 297 SGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv 375 (640)
||||+|||+|||||+.+|+|||.|||+++|||.+++++++.|+++++ +|.|||++.|+.. .+.++||||+-|++|+|+
T Consensus 149 SGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vd-lA~~Y~~Riigl~~G~iv 227 (258)
T COG3638 149 SGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVD-LAKKYADRIIGLKAGRIV 227 (258)
T ss_pred CcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHH-HHHHHHhhheEecCCcEE
Confidence 99999999999999999999999999999999999999999999985 5999999999976 477899999999999999
Q ss_pred EecChHHHHHH
Q 006571 376 YFGKASEAMAY 386 (640)
Q Consensus 376 ~~G~~~~~~~~ 386 (640)
|+|+++++-+.
T Consensus 228 fDg~~~el~~~ 238 (258)
T COG3638 228 FDGPASELTDE 238 (258)
T ss_pred EeCChhhhhHH
Confidence 99999987543
No 26
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=1.7e-49 Score=452.26 Aligned_cols=356 Identities=25% Similarity=0.331 Sum_probs=255.6
Q ss_pred hHhHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhch
Q 006571 8 TSLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSS 87 (640)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (640)
.+..+..++..++..+...|..++.+++++|+.+..+.+++.++.........+.....+........+..-..+.-+..
T Consensus 177 ~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (567)
T COG1132 177 RKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGTVLVLAL 256 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888999999999999999999999999999988888876655444432111111111001111111122333456
Q ss_pred hhhHhhhhhhhhhhhhccccCCCC----cccc------------ccCCCCCCCCCccccccccCCCCCCCCCCCCCeeEE
Q 006571 88 GAALSRASSASLGLSFSFTGFTMP----PDEI------------ADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLK 151 (640)
Q Consensus 88 g~~~~~~~~~~~g~~~~~~~~~~~----~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 151 (640)
|..++..+..+.|.+.+|..+... ...+ +..+.+...+.++.++.... ........|+
T Consensus 257 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~------~~~~~~~~I~ 330 (567)
T COG1132 257 GGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPD------PLKDTIGSIE 330 (567)
T ss_pred HHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCC------CCCCCCCeEE
Confidence 666666666666766666543321 1111 11111122221111111110 0111224599
Q ss_pred EEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hc
Q 006571 152 FTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SL 227 (640)
Q Consensus 152 ~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~~ 227 (640)
|+||+|+|+ +++++|+|+||+++|||.+||+||||||||||+++|.+ +++| .+|+|.+||.|+++ .+
T Consensus 331 f~~vsf~y~-------~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r-~~~~-~~G~I~idg~dI~~i~~~~l 401 (567)
T COG1132 331 FENVSFSYP-------GKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLR-LYDP-TSGEILIDGIDIRDISLDSL 401 (567)
T ss_pred EEEEEEEcC-------CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhc-cCCC-CCCeEEECCEehhhcCHHHH
Confidence 999999982 25789999999999999999999999999999999996 5654 58999999999863 67
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHH
Q 006571 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (640)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (640)
|++|+||+||+.+|. -||+|||.++......+.+.+..+...+++.++.+ +++.||.+|.. ...||||||||++||
T Consensus 402 r~~I~~V~Qd~~LF~-~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~l--p~g~dt~vge~-G~~LSgGQrQrlaiA 477 (567)
T COG1132 402 RKRIGIVSQDPLLFS-GTIRENIALGRPDATDEEIEEALKLANAHEFIANL--PDGYDTIVGER-GVNLSGGQRQRLAIA 477 (567)
T ss_pred HHhccEEcccceeec-ccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhC--cccccceecCC-CccCCHHHHHHHHHH
Confidence 999999999999997 59999999984211111111222223345555544 88899999944 456999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHH
Q 006571 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (640)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (640)
|||+++|+||+||||||+||+.++..|.+.++++. +++|+|+++|++++ + +.||+|++|++|++++.|+|+|+++
T Consensus 478 Rall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRlst-i-~~aD~IiVl~~G~i~e~G~h~eLl~ 552 (567)
T COG1132 478 RALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLST-I-KNADRIIVLDNGRIVERGTHEELLA 552 (567)
T ss_pred HHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHhH-H-HhCCEEEEEECCEEEEecCHHHHHH
Confidence 99999999999999999999999999999999887 57899999999865 4 5599999999999999999999986
No 27
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.2e-48 Score=373.30 Aligned_cols=220 Identities=28% Similarity=0.459 Sum_probs=200.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
+|++.+++++|+ ....+++||||+++.||+++|+|||||||||+|++|++.+. |++|.|++||.+..+
T Consensus 1 Ml~v~~l~K~y~-------~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~--P~~G~v~idg~d~~~~p~ 71 (245)
T COG4555 1 MLEVTDLTKSYG-------SKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLI--PDSGKVTIDGVDTVRDPS 71 (245)
T ss_pred Ceeeeehhhhcc-------CHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhcc--CCCceEEEeecccccChH
Confidence 478899999982 23459999999999999999999999999999999999765 468999999998743
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHH
Q 006571 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (640)
Q Consensus 226 ~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (640)
..|++||.++.+..+|..||++|||.|.+++. .+.+.+.++++.++.+.|+|.++.|+.+| ++|-|+||||+
T Consensus 72 ~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~---~l~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~kqkV~ 143 (245)
T COG4555 72 FVRRKIGVLFGERGLYARLTARENLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVA 143 (245)
T ss_pred HHhhhcceecCCcChhhhhhHHHHHHHHHHHh---hhhhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhHHHHH
Confidence 46899999998899999999999999998875 56788889999999999999999998875 79999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHH
Q 006571 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (640)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (640)
|||||+++|++++|||||||||..+...+.+.++++.+.|++||++||.. +++..+||+|++|++|++++.|+++++..
T Consensus 144 iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m-~EvealCDrvivlh~Gevv~~gs~~~l~~ 222 (245)
T COG4555 144 IARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIM-QEVEALCDRVIVLHKGEVVLEGSIEALDA 222 (245)
T ss_pred HHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccH-HHHHHhhheEEEEecCcEEEcCCHHHHHH
Confidence 99999999999999999999999999999999999998899999999995 56888999999999999999999998765
Q ss_pred H
Q 006571 386 Y 386 (640)
Q Consensus 386 ~ 386 (640)
.
T Consensus 223 r 223 (245)
T COG4555 223 R 223 (245)
T ss_pred H
Confidence 3
No 28
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=9.7e-49 Score=447.76 Aligned_cols=215 Identities=26% Similarity=0.423 Sum_probs=183.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.++|+||+|.|. +++++|+|+||+|+||+.+||+||||||||||+++|+|. + | .+|+|.+||.++.+
T Consensus 349 ~i~~~~vsf~~~-------~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~-~-p-~~G~I~i~g~~i~~~~~ 418 (588)
T PRK11174 349 TIEAEDLEILSP-------DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGF-L-P-YQGSLKINGIELRELDP 418 (588)
T ss_pred eEEEEeeEEecc-------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-C-C-CCcEEEECCEecccCCH
Confidence 599999998762 246799999999999999999999999999999999984 5 4 48999999999853
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHH-----HHHHHHHHcCCCccccccccCccCCcCCHH
Q 006571 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (640)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (640)
.+|++|+||+|++.+|+. |++|||.++. | +.++++..+ .+++.++ .|+++.||.+|.. ...||||
T Consensus 419 ~~lr~~i~~v~Q~~~LF~~-TI~eNI~~g~----~-~~~~eei~~al~~a~l~~~i~--~lp~G~dT~vge~-G~~LSGG 489 (588)
T PRK11174 419 ESWRKHLSWVGQNPQLPHG-TLRDNVLLGN----P-DASDEQLQQALENAWVSEFLP--LLPQGLDTPIGDQ-AAGLSVG 489 (588)
T ss_pred HHHHhheEEecCCCcCCCc-CHHHHhhcCC----C-CCCHHHHHHHHHHhCHHHHHH--hcccccccccccC-CCCCCHH
Confidence 578999999999999975 9999999863 1 233333222 2334444 3577889999876 4569999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecC
Q 006571 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (640)
Q Consensus 300 qrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (640)
||||++|||||+++|+||+||||||+||+.++..|.+.|+++. +++|+|++||+++. .+.||+|++|++|++++.|+
T Consensus 490 QrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~~--i~~aD~Iivl~~G~i~e~G~ 566 (588)
T PRK11174 490 QAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLED--LAQWDQIWVMQDGQIVQQGD 566 (588)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChHH--HHhCCEEEEEeCCeEeecCC
Confidence 9999999999999999999999999999999999999999886 48999999999853 57799999999999999999
Q ss_pred hHHHHH
Q 006571 380 ASEAMA 385 (640)
Q Consensus 380 ~~~~~~ 385 (640)
|+|+++
T Consensus 567 ~~eL~~ 572 (588)
T PRK11174 567 YAELSQ 572 (588)
T ss_pred HHHHHh
Confidence 999874
No 29
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.6e-48 Score=391.18 Aligned_cols=220 Identities=28% Similarity=0.513 Sum_probs=196.5
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCE---eCCh
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH---PYSK 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~---~~~~ 225 (640)
+|.++|+++.+ +...+++|||++|+.||++|++|||||||||||++|+|... ++.|.|.+||+ |.++
T Consensus 2 ~i~i~~~~~~~--------~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~--p~~G~I~~~~~~l~D~~~ 71 (345)
T COG1118 2 SIRINNVKKRF--------GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET--PDAGRIRLNGRVLFDVSN 71 (345)
T ss_pred ceeehhhhhhc--------ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCC--CCCceEEECCEeccchhc
Confidence 47888888877 46679999999999999999999999999999999999654 56899999999 5443
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHH
Q 006571 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (640)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (640)
...++||||+|+..+|++|||.+||.|+...+ ....++.+.+.++.++|+.+.|++..+ +++.+||||||||
T Consensus 72 ~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~-----ryP~QLSGGQrQR 145 (345)
T COG1118 72 LAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLAD-----RYPAQLSGGQRQR 145 (345)
T ss_pred cchhhcceeEEEechhhcccchHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhh-----cCchhcChHHHHH
Confidence 23478999999999999999999999998766 223456778899999999999987665 5789999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHH
Q 006571 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (640)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (640)
|++||||+.+|++||||||+++||..-+.++.+.|+++.++ |.|++++|||+. ++.++||||++|++|+|...|+++|
T Consensus 146 VALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e-ea~~ladrvvvl~~G~Ieqvg~p~e 224 (345)
T COG1118 146 VALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVLNQGRIEQVGPPDE 224 (345)
T ss_pred HHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH-HHHhhcceEEEecCCeeeeeCCHHH
Confidence 99999999999999999999999999999999999999876 999999999965 6889999999999999999999999
Q ss_pred HHH
Q 006571 383 AMA 385 (640)
Q Consensus 383 ~~~ 385 (640)
+.+
T Consensus 225 v~~ 227 (345)
T COG1118 225 VYD 227 (345)
T ss_pred Hhc
Confidence 853
No 30
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=7.6e-48 Score=366.77 Aligned_cols=213 Identities=29% Similarity=0.470 Sum_probs=191.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
+|+|+||++.|+ ..+++|+||||.|++||++-|+||||||||||||+|.+... ++.|+|+++|+++..
T Consensus 1 mI~f~~V~k~Y~-------~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~--pt~G~i~~~~~dl~~l~~ 71 (223)
T COG2884 1 MIRFENVSKAYP-------GGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER--PTRGKILVNGHDLSRLKG 71 (223)
T ss_pred CeeehhhhhhcC-------CCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc--CCCceEEECCeecccccc
Confidence 489999999983 23679999999999999999999999999999999998543 568999999999852
Q ss_pred ----hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHH
Q 006571 226 ----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (640)
Q Consensus 226 ----~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 301 (640)
.+|++||+||||..|.++.||+||+.|+.... ..+..+.++++.++|+.+||.+..+. .+.+||||||
T Consensus 72 ~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~---G~~~~~i~~rV~~~L~~VgL~~k~~~-----lP~~LSGGEQ 143 (223)
T COG2884 72 REIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVI---GKPPREIRRRVSEVLDLVGLKHKARA-----LPSQLSGGEQ 143 (223)
T ss_pred cccchhhheeeeEeeeccccccchHhhhhhhhhhcc---CCCHHHHHHHHHHHHHHhccchhhhc-----CccccCchHH
Confidence 47999999999999999999999999998764 35678889999999999999987764 4679999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecC
Q 006571 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (640)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (640)
|||+||||++.+|++||.||||.+|||..+.+|++++.++.+.|.|||+.|||.. .+..+-.|++.|++|+++....
T Consensus 144 QRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~-lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 144 QRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLE-LVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred HHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHH-HHHhccCcEEEEeCCEEEeccc
Confidence 9999999999999999999999999999999999999999999999999999953 4666678999999999987654
No 31
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=6.1e-47 Score=399.49 Aligned_cols=219 Identities=27% Similarity=0.431 Sum_probs=194.6
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (640)
..|+++||+++| +++.+|+||||+|++||+++|+||||||||||+++|+|.+. +++|+|.++|.++..
T Consensus 6 ~~i~i~~l~k~~--------~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~--p~~G~v~i~G~~~~~~~ 75 (306)
T PRK13537 6 APIDFRNVEKRY--------GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH--PDAGSISLCGEPVPSRA 75 (306)
T ss_pred ceEEEEeEEEEE--------CCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEecccch
Confidence 369999999998 34679999999999999999999999999999999999653 568999999998753
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHH
Q 006571 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (640)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (640)
..+++||||||++.+++.+||+||+.|.+..+ ..+..+..+++.++++.++|.+..++.+ ++||||||||+
T Consensus 76 ~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl 147 (306)
T PRK13537 76 RHARQRVGVVPQFDNLDPDFTVRENLLVFGRYF---GLSAAAARALVPPLLEFAKLENKADAKV-----GELSGGMKRRL 147 (306)
T ss_pred HHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCch-----hhCCHHHHHHH
Confidence 45788999999999999999999999866543 2334455567889999999988777654 68999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHH
Q 006571 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (640)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (640)
+||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||+|++|++|++++.|+++++.
T Consensus 148 ~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~-e~~~~~d~i~il~~G~i~~~g~~~~l~ 226 (306)
T PRK13537 148 TLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFME-EAERLCDRLCVIEEGRKIAEGAPHALI 226 (306)
T ss_pred HHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999999999877999999999975 578899999999999999999999986
Q ss_pred H
Q 006571 385 A 385 (640)
Q Consensus 385 ~ 385 (640)
.
T Consensus 227 ~ 227 (306)
T PRK13537 227 E 227 (306)
T ss_pred h
Confidence 4
No 32
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=6.4e-49 Score=456.76 Aligned_cols=345 Identities=20% Similarity=0.267 Sum_probs=248.1
Q ss_pred hHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchhh
Q 006571 10 LARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGA 89 (640)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 89 (640)
..++.++.-++..+...|...+.+|+|+++.+....+++.+..........+.....+.........+.-..+.-+..|+
T Consensus 302 ~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~ 381 (686)
T TIGR03797 302 KERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTVFNAVLPVLTSAALFAAAI 381 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666777888899999999999999999888887776665544433321111111111112222223344456788
Q ss_pred hHhhhhhhhhhhhhccccCCC----Ccccccc------------CCCCCCCCCccccccccCCCCCCCCCCCCCeeEEEE
Q 006571 90 ALSRASSASLGLSFSFTGFTM----PPDEIAD------------SKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFT 153 (640)
Q Consensus 90 ~~~~~~~~~~g~~~~~~~~~~----~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 153 (640)
.++..|..+.|.+++|..+.. |...+.. .+.....+.+++.+. ... ..+.....|+++
T Consensus 382 ~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~-----~~~-~~~~~~~~I~~~ 455 (686)
T TIGR03797 382 SLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDE-----AKT-DPGKLSGAIEVD 455 (686)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc-----CcC-CCCCCCceEEEE
Confidence 888888888887777654321 2111111 011111111111000 000 011122369999
Q ss_pred eEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hccC
Q 006571 154 DVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKS 229 (640)
Q Consensus 154 ~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~ 229 (640)
||+|+|+ ..++++|+|+||+|+|||.+||+||||||||||+|+|+|. ++ +.+|+|.+||+++.+ .+|+
T Consensus 456 nvsf~Y~------~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl-~~-p~~G~I~idg~~i~~~~~~~lr~ 527 (686)
T TIGR03797 456 RVTFRYR------PDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGF-ET-PESGSVFYDGQDLAGLDVQAVRR 527 (686)
T ss_pred EEEEEcC------CCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCC-CC-CCCCEEEECCEEcCcCCHHHHHh
Confidence 9999993 1346799999999999999999999999999999999985 44 458999999999863 5789
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHc-------CCCccccccccCccCCcCCHHHHH
Q 006571 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL-------GLERCQDTMIGGSFVRGVSGGERK 302 (640)
Q Consensus 230 ~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~l-------gL~~~~~t~vg~~~~~~LSGGqrq 302 (640)
+||||+|++.+|+. |++|||.++.. .++++ +.++++.. .++++.||.+|+. ...|||||||
T Consensus 528 ~i~~v~Q~~~lf~g-TI~eNi~~~~~------~~~e~----i~~al~~a~l~~~i~~lp~G~dt~ige~-G~~LSGGQrQ 595 (686)
T TIGR03797 528 QLGVVLQNGRLMSG-SIFENIAGGAP------LTLDE----AWEAARMAGLAEDIRAMPMGMHTVISEG-GGTLSGGQRQ 595 (686)
T ss_pred ccEEEccCCccCcc-cHHHHHhcCCC------CCHHH----HHHHHHHcCcHHHHHhccccccccccCC-CCCCCHHHHH
Confidence 99999999999975 99999998632 22222 33333333 3467789999865 4679999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHH
Q 006571 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (640)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (640)
|++|||||+++|+||+||||||+||+.++.++.+.|+++ ++|+|++||+++. .+.||+|++|++|++++.|++++
T Consensus 596 RialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~~--i~~~D~Iivl~~G~iv~~G~~~~ 670 (686)
T TIGR03797 596 RLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLST--IRNADRIYVLDAGRVVQQGTYDE 670 (686)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChHH--HHcCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999999999999876 5899999999853 57799999999999999999999
Q ss_pred HHH
Q 006571 383 AMA 385 (640)
Q Consensus 383 ~~~ 385 (640)
+++
T Consensus 671 Ll~ 673 (686)
T TIGR03797 671 LMA 673 (686)
T ss_pred HHh
Confidence 864
No 33
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=5.4e-49 Score=458.50 Aligned_cols=349 Identities=23% Similarity=0.338 Sum_probs=254.8
Q ss_pred HhHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchh
Q 006571 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSG 88 (640)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 88 (640)
++.++.++..++..+.+.|..++.+|||.++.+..+.++|.+.+.+......+.....+.+.........-..+.-+..|
T Consensus 327 ~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g 406 (711)
T TIGR00958 327 LLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTTSVLGMLIQVLVLYYG 406 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666778888899999999999999999999999999999888766655443333333221222222223344455688
Q ss_pred hhHhhhhhhhhhhhhccccCCCCcc----cc------------ccCCCCCCCCCccccccccCCCCCCCCCCCCCeeEEE
Q 006571 89 AALSRASSASLGLSFSFTGFTMPPD----EI------------ADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKF 152 (640)
Q Consensus 89 ~~~~~~~~~~~g~~~~~~~~~~~~~----~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 152 (640)
+.++..|..+.|.+.++..+..... .+ +..+.+...+.++..+.. ...........|+|
T Consensus 407 ~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~-----~~~~~~~~~~~I~~ 481 (711)
T TIGR00958 407 GQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLT-----GTLAPLNLEGLIEF 481 (711)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC-----CCCCCCCCCCeEEE
Confidence 8888888888888877765432111 11 111111111111111100 00000112236999
Q ss_pred EeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hcc
Q 006571 153 TDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLK 228 (640)
Q Consensus 153 ~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~~~ 228 (640)
+||+|+|+. .+++++|+|+||+|+|||.+||+||||||||||+|+|+|. ++ +.+|+|.+||+|+.+ .++
T Consensus 482 ~nVsf~Y~~-----~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl-~~-p~~G~I~idg~~i~~~~~~~lr 554 (711)
T TIGR00958 482 QDVSFSYPN-----RPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNL-YQ-PTGGQVLLDGVPLVQYDHHYLH 554 (711)
T ss_pred EEEEEECCC-----CCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhc-cC-CCCCEEEECCEEHHhcCHHHHH
Confidence 999999842 2246799999999999999999999999999999999985 44 468999999999853 578
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcC-------CCccccccccCccCCcCCHHHH
Q 006571 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-------LERCQDTMIGGSFVRGVSGGER 301 (640)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~t~vg~~~~~~LSGGqr 301 (640)
++|+||+|++.+|+. |++|||.++.. ..++++ +.++++..+ ++++.||.+|+. ...||||||
T Consensus 555 ~~i~~v~Q~~~lF~g-TIreNI~~g~~-----~~~~e~----i~~al~~a~l~~~i~~lp~GldT~ige~-G~~LSGGQk 623 (711)
T TIGR00958 555 RQVALVGQEPVLFSG-SVRENIAYGLT-----DTPDEE----IMAAAKAANAHDFIMEFPNGYDTEVGEK-GSQLSGGQK 623 (711)
T ss_pred hhceEEecCcccccc-CHHHHHhcCCC-----CCCHHH----HHHHHHHcCCHHHHHhCCCccCCcccCC-CCcCCHHHH
Confidence 899999999999975 99999998632 122222 333333333 466789998865 467999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChH
Q 006571 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (640)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (640)
||++|||||+++|+|||||||||+||+.++..+.+ .. ..+++|+|+++|+++. .+.||+|++|++|+|++.|+|+
T Consensus 624 QRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~~--i~~aD~IivL~~G~ive~Gt~~ 698 (711)
T TIGR00958 624 QRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLST--VERADQILVLKKGSVVEMGTHK 698 (711)
T ss_pred HHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHHH--HHhCCEEEEEECCEEEEeeCHH
Confidence 99999999999999999999999999999999988 22 2358999999999863 5779999999999999999999
Q ss_pred HHHH
Q 006571 382 EAMA 385 (640)
Q Consensus 382 ~~~~ 385 (640)
|+++
T Consensus 699 eL~~ 702 (711)
T TIGR00958 699 QLME 702 (711)
T ss_pred HHHh
Confidence 9875
No 34
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=9.5e-47 Score=402.64 Aligned_cols=221 Identities=24% Similarity=0.415 Sum_probs=193.1
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
+|+++||+++|..+ .+.+++|+||||+|++||+++|+||||||||||+|+|+|... +++|+|.++|+++..
T Consensus 1 mI~~~~lsk~y~~~----~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~--p~~G~I~i~G~~i~~~~~ 74 (343)
T TIGR02314 1 MIKLSNITKVFHQG----TKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTSGSVIVDGQDLTTLSN 74 (343)
T ss_pred CEEEEEEEEEECCC----CcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCcCCH
Confidence 37999999998311 123579999999999999999999999999999999999543 568999999998742
Q ss_pred ----hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHH
Q 006571 226 ----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (640)
Q Consensus 226 ----~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 301 (640)
..+++||||||++.+++.+||+||+.++.... ..++++.++++.++++.+||.+..|. ++.+||||||
T Consensus 75 ~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~e~l~~vgL~~~~~~-----~~~~LSgGqk 146 (343)
T TIGR02314 75 SELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEIKRKVTELLALVGLGDKHDS-----YPSNLSGGQK 146 (343)
T ss_pred HHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhC-----ChhhCCHHHH
Confidence 24678999999999999999999999976532 23456667789999999999887665 4578999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecCh
Q 006571 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (640)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (640)
|||+|||||+.+|++|||||||++||+.++..+++.|++++++ |.|||++||++. .+.++||+|++|++|++++.|++
T Consensus 147 QRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~-~v~~~~d~v~vl~~G~iv~~g~~ 225 (343)
T TIGR02314 147 QRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD-VVKRICDCVAVISNGELIEQGTV 225 (343)
T ss_pred HHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCH
Confidence 9999999999999999999999999999999999999999875 999999999965 57789999999999999999999
Q ss_pred HHHH
Q 006571 381 SEAM 384 (640)
Q Consensus 381 ~~~~ 384 (640)
+++.
T Consensus 226 ~~v~ 229 (343)
T TIGR02314 226 SEIF 229 (343)
T ss_pred HHHH
Confidence 8874
No 35
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-47 Score=370.13 Aligned_cols=233 Identities=24% Similarity=0.437 Sum_probs=197.0
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC----CcccEEEECCEeC
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP----TVGGSITYNDHPY 223 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~----~~~G~I~~~G~~~ 223 (640)
..++++||++.| +++.+|+|||+.|++++++|++|||||||||||++|. |..+. ..+|+|.++|+++
T Consensus 6 ~~~~~~~l~~yY--------g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lN-Rmndl~~~~r~~G~v~~~g~ni 76 (253)
T COG1117 6 PAIEVRDLNLYY--------GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLN-RMNDLIPGARVEGEVLLDGKNI 76 (253)
T ss_pred ceeEecceeEEE--------CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHH-hhcccCcCceEEEEEEECCeec
Confidence 368999999998 5788999999999999999999999999999999998 55432 2579999999998
Q ss_pred Ch------hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCC
Q 006571 224 SK------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (640)
Q Consensus 224 ~~------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LS 297 (640)
.. .+|++||+|||.|..|| +|++||+.|+.++.. ...++.++.|+..|+.-.|.+.-...+ +....+||
T Consensus 77 ~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g---~~~~~ldeiVe~sLk~AaLWdEVKDrL-~~sa~~LS 151 (253)
T COG1117 77 YDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHG---IKDKELDEIVESSLKKAALWDEVKDRL-HKSALGLS 151 (253)
T ss_pred cCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhc---cchHHHHHHHHHHHHHhHhHHHhHHHh-hCCccCCC
Confidence 43 57999999999999999 899999999987753 223667778888888877754322222 23346799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEe
Q 006571 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (640)
Q Consensus 298 GGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (640)
|||+||++|||||+.+|+|||||||||+|||.+..+|-+++.+|++ .-|||++||.+. .+.+..|+..++..|+++++
T Consensus 152 GGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~-~yTIviVTHnmq-QAaRvSD~taFf~~G~LvE~ 229 (253)
T COG1117 152 GGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK-KYTIVIVTHNMQ-QAARVSDYTAFFYLGELVEF 229 (253)
T ss_pred hhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh-ccEEEEEeCCHH-HHHHHhHhhhhhcccEEEEE
Confidence 9999999999999999999999999999999999999999999985 689999999965 57789999999999999999
Q ss_pred cChHHHHHHHHhcCCCCCCCCChHHHH
Q 006571 378 GKASEAMAYFSSIGCSPQIAMNPAEFL 404 (640)
Q Consensus 378 G~~~~~~~~f~~~g~~~~~~~npad~~ 404 (640)
|+.+++. ..|.+.-..||+
T Consensus 230 g~T~~iF--------~~P~~~~TedYi 248 (253)
T COG1117 230 GPTDKIF--------TNPKHKRTEDYI 248 (253)
T ss_pred cCHHhhh--------cCccHHHHHHHh
Confidence 9999874 335555555664
No 36
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1.1e-48 Score=481.59 Aligned_cols=354 Identities=20% Similarity=0.260 Sum_probs=255.1
Q ss_pred HHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchhhhHhhh
Q 006571 15 SDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGAALSRA 94 (640)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 94 (640)
++.+++.+..++|.+++.+|||+|+.+....++|.+..........+.....+.....+..++.-..+.-++.|+.++..
T Consensus 1015 ~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~ 1094 (1466)
T PTZ00265 1015 DEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRR 1094 (1466)
T ss_pred HHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34467788899999999999999999999999998877655433332222222221222233333455666789999988
Q ss_pred hhhhhhhhhccccCCC----------------CccccccCCCCCCCCCccccccccCCCCCCCCCCCCCeeEEEEeEEEE
Q 006571 95 SSASLGLSFSFTGFTM----------------PPDEIADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYK 158 (640)
Q Consensus 95 ~~~~~g~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vs~~ 158 (640)
|..+.|.++.+..+.+ ..+..+..+.+...+.++.++............+.....|+|+||+|+
T Consensus 1095 g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~ 1174 (1466)
T PTZ00265 1095 GTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFR 1174 (1466)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEE
Confidence 8888877655431111 111112222222222111111000000000000112236999999999
Q ss_pred EeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC---------------------------
Q 006571 159 VILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT--------------------------- 211 (640)
Q Consensus 159 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~--------------------------- 211 (640)
|+. +++++||+|+||+|+||+.+||+||||||||||+++|.| +++|.
T Consensus 1175 Y~~-----~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r-~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1248 (1466)
T PTZ00265 1175 YIS-----RPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMR-FYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQ 1248 (1466)
T ss_pred CCC-----CCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHH-hCCCcccccccccccccccccccccccccccc
Confidence 842 234579999999999999999999999999999999997 56552
Q ss_pred --------------------------cccEEEECCEeCC----hhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCC
Q 006571 212 --------------------------VGGSITYNDHPYS----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNT 261 (640)
Q Consensus 212 --------------------------~~G~I~~~G~~~~----~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~ 261 (640)
.+|+|++||.++. +.+|++||||+|++.||+ .|++|||.|+.. .
T Consensus 1249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~-gTIreNI~~g~~-----~ 1322 (1466)
T PTZ00265 1249 NVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN-MSIYENIKFGKE-----D 1322 (1466)
T ss_pred ccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc-ccHHHHHhcCCC-----C
Confidence 5899999999985 367999999999999996 599999999732 2
Q ss_pred ccHHHHH-----HHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH
Q 006571 262 LTKQQKE-----KRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ 336 (640)
Q Consensus 262 ~~~~~~~-----~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~ 336 (640)
.+.++.+ +.+++++. .|++++||.||.. ...||||||||++|||||+++|+|||||||||+||+.++..|.+
T Consensus 1323 at~eeI~~A~k~A~l~~fI~--~LP~GydT~VGe~-G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~ 1399 (1466)
T PTZ00265 1323 ATREDVKRACKFAAIDEFIE--SLPNKYDTNVGPY-GKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEK 1399 (1466)
T ss_pred CCHHHHHHHHHHcCCHHHHH--hCccccCCccCCC-CCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHH
Confidence 2333322 23344554 4688999999865 45699999999999999999999999999999999999999999
Q ss_pred HHHHHH-HCCCEEEEEeCCCCcHHHhccCEEEEEcC----CeEE-EecChHHHHH
Q 006571 337 MLQDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGK----GSLL-YFGKASEAMA 385 (640)
Q Consensus 337 ~L~~l~-~~g~TvI~~tH~~~~~i~~~~D~i~vL~~----G~iv-~~G~~~~~~~ 385 (640)
.|+++. .+++|+|+|+|+++. .+.||+|++|++ |+++ +.|+|+|+++
T Consensus 1400 ~L~~~~~~~~~TvIiIaHRlst--i~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1400 TIVDIKDKADKTIITIAHRIAS--IKRSDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred HHHHHhccCCCEEEEEechHHH--HHhCCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence 999986 358999999999864 578999999999 9955 8999999974
No 37
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-46 Score=380.91 Aligned_cols=217 Identities=29% Similarity=0.509 Sum_probs=187.6
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (640)
|+++||+++| +++++|+|+||+|++||+++|+||||||||||+|+|+|.+. +.+|+|.++|.++..
T Consensus 1 l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~~ 70 (235)
T cd03261 1 IELRGLTKSF--------GGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR--PDSGEVLIDGEDISGLSEA 70 (235)
T ss_pred CeEEEEEEEE--------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccChh
Confidence 4789999998 34579999999999999999999999999999999999653 468999999998642
Q ss_pred ---hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHH
Q 006571 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (640)
Q Consensus 226 ---~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (640)
.+++.++||+|++.+++.+||+||+.++..... ..+.++..+++.++++.+||.+..++. +..|||||||
T Consensus 71 ~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~q 143 (235)
T cd03261 71 ELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLY-----PAELSGGMKK 143 (235)
T ss_pred hHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHH
Confidence 346789999999999999999999998753221 123445566788999999998766553 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChH
Q 006571 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (640)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (640)
||+|||||+.+|+||||||||+|||+.++..+.+.|++++++ |+|||++||++. .+..+||+|++|++|++++.|+++
T Consensus 144 rv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l~~G~i~~~g~~~ 222 (235)
T cd03261 144 RVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLYDGKIVAEGTPE 222 (235)
T ss_pred HHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEEECCeEEEecCHH
Confidence 999999999999999999999999999999999999999874 899999999975 467889999999999999999988
Q ss_pred HHH
Q 006571 382 EAM 384 (640)
Q Consensus 382 ~~~ 384 (640)
++.
T Consensus 223 ~~~ 225 (235)
T cd03261 223 ELR 225 (235)
T ss_pred HHc
Confidence 763
No 38
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=2.6e-46 Score=401.39 Aligned_cols=218 Identities=27% Similarity=0.502 Sum_probs=195.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--h
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--~ 226 (640)
.|+++||+++| +++.+|+|+||++++||+++|+|||||||||||++|+|... +++|+|.++|+++.. .
T Consensus 4 ~l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~~~~~~ 73 (353)
T TIGR03265 4 YLSIDNIRKRF--------GAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER--QTAGTIYQGGRDITRLPP 73 (353)
T ss_pred EEEEEEEEEEe--------CCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCceEEEECCEECCCCCH
Confidence 59999999998 34679999999999999999999999999999999999653 568999999998753 3
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHH
Q 006571 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (640)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (640)
.++.||||+|++.+||++||+||+.|+...+ ..++.+.+++++++++.++|.+..+. .+.+|||||||||+|
T Consensus 74 ~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~-----~~~~LSgGq~QRvaL 145 (353)
T TIGR03265 74 QKRDYGIVFQSYALFPNLTVADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERK-----YPGQLSGGQQQRVAL 145 (353)
T ss_pred HHCCEEEEeCCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhC-----ChhhCCHHHHHHHHH
Confidence 4678999999999999999999999987543 24566677889999999999887765 457899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHH
Q 006571 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (640)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (640)
||||+.+|++|||||||++||+.++..+.+.|+++.++ |.|+|++||++. ++..+||+|++|++|++++.|+++++..
T Consensus 146 ARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~i~vl~~G~i~~~g~~~~~~~ 224 (353)
T TIGR03265 146 ARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADRIVVMNHGVIEQVGTPQEIYR 224 (353)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999999765 899999999975 5789999999999999999999998853
No 39
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-46 Score=401.46 Aligned_cols=218 Identities=28% Similarity=0.469 Sum_probs=193.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--h
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--~ 226 (640)
.|+++||+++|. +++.+|+|+||+|++||+++|+|||||||||||++|+|... +++|+|.+||+++.. .
T Consensus 3 ~l~i~~l~~~~~-------~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i~~~~~ 73 (356)
T PRK11650 3 GLKLQAVRKSYD-------GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER--ITSGEIWIGGRVVNELEP 73 (356)
T ss_pred EEEEEeEEEEeC-------CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEECCCCCH
Confidence 589999999982 24579999999999999999999999999999999999653 568999999998753 2
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHH
Q 006571 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (640)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (640)
.++.||||+|++.+||++||+||+.|+...+ ..++.+..++++++++.+||.+..+. ++.+|||||||||+|
T Consensus 74 ~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~-----~~~~LSgGq~QRval 145 (356)
T PRK11650 74 ADRDIAMVFQNYALYPHMSVRENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDR-----KPRELSGGQRQRVAM 145 (356)
T ss_pred HHCCEEEEeCCccccCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhhC-----ChhhCCHHHHHHHHH
Confidence 3578999999999999999999999986532 23556667789999999999877665 457899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHH
Q 006571 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (640)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (640)
||||+.+|++|||||||++||+.++..+.+.|+++.++ |.|+|++||++. ++..+||+|++|++|+++..|+++++.
T Consensus 146 ARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~l~D~i~vl~~G~i~~~g~~~~~~ 223 (356)
T PRK11650 146 GRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV-EAMTLADRVVVMNGGVAEQIGTPVEVY 223 (356)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEECCHHHHH
Confidence 99999999999999999999999999999999999865 899999999965 578999999999999999999999874
No 40
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=4.3e-48 Score=451.52 Aligned_cols=354 Identities=23% Similarity=0.287 Sum_probs=247.9
Q ss_pred hHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchhh
Q 006571 10 LARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGA 89 (640)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 89 (640)
..++.+++-++..+...|.+.+.+|+|+++.+....+++.+...+......+.....+.........+.-..+.-+..|+
T Consensus 320 ~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~ 399 (710)
T TIGR03796 320 ANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILGVLPTLLTSLNSALILVVGG 399 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666677888899999999999999999888888876665544432221111111101111122222334456788
Q ss_pred hHhhhhhhhhhhhhccccCCC----Ccccccc------------CCCCCCCCCccccccccC-CCC-CCCCCCCCCeeEE
Q 006571 90 ALSRASSASLGLSFSFTGFTM----PPDEIAD------------SKPFSDDDIPEDIEAGTR-ERP-KFQTEPTLPIYLK 151 (640)
Q Consensus 90 ~~~~~~~~~~g~~~~~~~~~~----~~~~~~~------------~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~l~ 151 (640)
.++..|..+.|.+.+|..+.. |...+.. .+.....+.+++...... ... .....+.....|+
T Consensus 400 ~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~ 479 (710)
T TIGR03796 400 LRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVE 479 (710)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccccccccccCCCCCCeEE
Confidence 888888888888777664322 1111110 111111111111000000 000 0000011234699
Q ss_pred EEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hc
Q 006571 152 FTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SL 227 (640)
Q Consensus 152 ~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~~ 227 (640)
++||+|+|+ ..++++|+|+|++|++||.+||+||||||||||+|+|+|. ++ +.+|+|.+||.++.+ .+
T Consensus 480 ~~~vsf~y~------~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl-~~-p~~G~I~idg~~i~~~~~~~l 551 (710)
T TIGR03796 480 LRNITFGYS------PLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGL-YQ-PWSGEILFDGIPREEIPREVL 551 (710)
T ss_pred EEEEEEecC------CCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcC-CC-CCCcEEEECCEeHHHCCHHHH
Confidence 999999993 2346799999999999999999999999999999999985 43 468999999999853 57
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHH-----HHHHHHHcCCCccccccccCccCCcCCHHHHH
Q 006571 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKR-----AIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (640)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (640)
|++||||+|++.+|+. |++|||.++. + ..++++..+. +++.++ .++++.||.+|+. ..+|||||||
T Consensus 552 r~~i~~v~Q~~~lf~g-Ti~eNi~l~~----~-~~~~~~i~~al~~~~l~~~i~--~lp~gl~t~i~e~-G~~LSGGQrQ 622 (710)
T TIGR03796 552 ANSVAMVDQDIFLFEG-TVRDNLTLWD----P-TIPDADLVRACKDAAIHDVIT--SRPGGYDAELAEG-GANLSGGQRQ 622 (710)
T ss_pred HhheeEEecCChhhhc-cHHHHhhCCC----C-CCCHHHHHHHHHHhCCHHHHH--hCcCcccceeccC-CCCCCHHHHH
Confidence 8999999999999975 9999998752 1 1233322221 223333 3566789999865 4679999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHH
Q 006571 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (640)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (640)
|++|||||+++|+|||||||||+||+.++.++.+.|++ .++|+|++||+++. ...||+|++|++|++++.|+|++
T Consensus 623 RiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~~--i~~~D~Iivl~~G~i~~~G~~~~ 697 (710)
T TIGR03796 623 RLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLST--IRDCDEIIVLERGKVVQRGTHEE 697 (710)
T ss_pred HHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHHH--HHhCCEEEEEeCCEEEEecCHHH
Confidence 99999999999999999999999999999999999986 48999999999864 57799999999999999999999
Q ss_pred HHH
Q 006571 383 AMA 385 (640)
Q Consensus 383 ~~~ 385 (640)
+++
T Consensus 698 Ll~ 700 (710)
T TIGR03796 698 LWA 700 (710)
T ss_pred HHH
Confidence 875
No 41
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.9e-46 Score=399.52 Aligned_cols=217 Identities=25% Similarity=0.515 Sum_probs=194.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--h
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--~ 226 (640)
.|+++||+++| +++.+|+|+||+|++||+++|+|||||||||||++|+|... +++|+|.+||+++.. .
T Consensus 6 ~l~~~~l~~~~--------~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i~~~~~ 75 (351)
T PRK11432 6 FVVLKNITKRF--------GSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK--PTEGQIFIDGEDVTHRSI 75 (351)
T ss_pred EEEEEeEEEEE--------CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEECCCCCH
Confidence 69999999998 34679999999999999999999999999999999999653 568999999998753 3
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHH
Q 006571 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (640)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (640)
.++.||||+|++.+||++||+||+.|+...+ ..++++.+++++++++.+||.+..+. .+..|||||||||+|
T Consensus 76 ~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~~gl~~~~~r-----~~~~LSgGq~QRVaL 147 (351)
T PRK11432 76 QQRDICMVFQSYALFPHMSLGENVGYGLKML---GVPKEERKQRVKEALELVDLAGFEDR-----YVDQISGGQQQRVAL 147 (351)
T ss_pred HHCCEEEEeCCcccCCCCCHHHHHHHHHhHc---CCCHHHHHHHHHHHHHHcCCchhhcC-----ChhhCCHHHHHHHHH
Confidence 3578999999999999999999999987543 24566677889999999999876654 457899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHH
Q 006571 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (640)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (640)
||||+.+|++|||||||++||+.++.++.+.|+++.++ |+|+|++||++. ++..+||+|++|++|+++..|+++++.
T Consensus 148 ARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-e~~~laD~i~vm~~G~i~~~g~~~~~~ 225 (351)
T PRK11432 148 ARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS-EAFAVSDTVIVMNKGKIMQIGSPQELY 225 (351)
T ss_pred HHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999999765 899999999975 578899999999999999999999875
No 42
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=4.7e-48 Score=450.06 Aligned_cols=353 Identities=24% Similarity=0.361 Sum_probs=252.4
Q ss_pred hHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchhh
Q 006571 10 LARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGA 89 (640)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 89 (640)
..++..+..++..+...|...+.+|+|+++.+....+++.+..........+.....+.........+.-..+.-++.|+
T Consensus 312 ~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~ 391 (694)
T TIGR03375 312 LAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATNFAQFIQQLVSVAIVVVGV 391 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555677788888999999999999999999888888877665543332221111111101111112222334456788
Q ss_pred hHhhhhhhhhhhhhccccCCC----Cccccc------------cCCCCCCCCCccccccccCCCCCCCCCCCCCeeEEEE
Q 006571 90 ALSRASSASLGLSFSFTGFTM----PPDEIA------------DSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFT 153 (640)
Q Consensus 90 ~~~~~~~~~~g~~~~~~~~~~----~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 153 (640)
.++..|..+.|.+++|..+.. |...+. ..+.....+.+++.+ .. ......+.....|+++
T Consensus 392 ~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~--~~--~~~~~~~~~~~~I~~~ 467 (694)
T TIGR03375 392 YLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERP--EG--TRFLHRPRLQGEIEFR 467 (694)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC--CC--CCCCCCCCccceEEEE
Confidence 888888888888877764322 111111 011111111111000 00 0000011122469999
Q ss_pred eEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hccC
Q 006571 154 DVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKS 229 (640)
Q Consensus 154 ~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~ 229 (640)
||+|+|+ ..++++|+|+|++|+|||.+||+||||||||||+|+|+|. ++ +.+|+|.+||.++.+ .+|+
T Consensus 468 ~vsf~Y~------~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl-~~-p~~G~I~idg~~l~~~~~~~lr~ 539 (694)
T TIGR03375 468 NVSFAYP------GQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGL-YQ-PTEGSVLLDGVDIRQIDPADLRR 539 (694)
T ss_pred EEEEEeC------CCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcC-CC-CCCceEEECCEEhhhCCHHHHHh
Confidence 9999993 2346799999999999999999999999999999999985 44 458999999999853 5789
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHH-----HHHHHHHHcCCCccccccccCccCCcCCHHHHHHH
Q 006571 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (640)
Q Consensus 230 ~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (640)
+|+||+|++.+|+. |++|||.++. + ..++++..+ .+++.++ .|+++.||.+|+. ...||||||||+
T Consensus 540 ~i~~v~Q~~~lf~~-TI~eNi~~~~----~-~~~~~~i~~a~~~~~l~~~i~--~lp~gl~T~i~e~-G~~LSgGQrQRl 610 (694)
T TIGR03375 540 NIGYVPQDPRLFYG-TLRDNIALGA----P-YADDEEILRAAELAGVTEFVR--RHPDGLDMQIGER-GRSLSGGQRQAV 610 (694)
T ss_pred ccEEECCChhhhhh-hHHHHHhCCC----C-CCCHHHHHHHHHHcChHHHHH--hCcccccceecCC-CCCCCHHHHHHH
Confidence 99999999999975 9999999862 1 123333222 2233333 3577889999865 467999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHH
Q 006571 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (640)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (640)
+|||||+++|+||+||||||+||+.++..+.+.|+++.+ ++|+|++||+++. .+.||+|++|++|++++.|+|+|++
T Consensus 611 alARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~-~~T~iiItHrl~~--~~~~D~iivl~~G~i~e~G~~~eLl 687 (694)
T TIGR03375 611 ALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA-GKTLVLVTHRTSL--LDLVDRIIVMDNGRIVADGPKDQVL 687 (694)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHH--HHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 999999999999999999999999999999999999864 8999999999863 5789999999999999999999987
Q ss_pred HH
Q 006571 385 AY 386 (640)
Q Consensus 385 ~~ 386 (640)
+.
T Consensus 688 ~~ 689 (694)
T TIGR03375 688 EA 689 (694)
T ss_pred HH
Confidence 53
No 43
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=3.7e-48 Score=451.88 Aligned_cols=352 Identities=21% Similarity=0.267 Sum_probs=252.3
Q ss_pred HhHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchh
Q 006571 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSG 88 (640)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 88 (640)
++.++.+++-++..+...|.+.+.+|+|+++.+....+++.++.........+.....+.....+...+.-..+.-++.|
T Consensus 321 ~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~il~~g 400 (708)
T TIGR01193 321 KLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAIKAVTKLILNVVILWTG 400 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556667777888889999999999999999988888877766544443322111111110111111222234445688
Q ss_pred hhHhhhhhhhhhhhhccccCCC----Ccccccc------------CCCCCCCCCccccccccCCCCCCCCCCCCCeeEEE
Q 006571 89 AALSRASSASLGLSFSFTGFTM----PPDEIAD------------SKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKF 152 (640)
Q Consensus 89 ~~~~~~~~~~~g~~~~~~~~~~----~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 152 (640)
+.++..|..+.|.+.+|..+.. |...+.. .+.....+.+.+.+... .....+.....|++
T Consensus 401 ~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~----~~~~~~~~~~~I~~ 476 (708)
T TIGR01193 401 AYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKK----KRTELNNLNGDIVI 476 (708)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccc----cccCCCCCCCcEEE
Confidence 8888888888888887765432 2222111 11111111111110000 00011112236999
Q ss_pred EeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC----hhcc
Q 006571 153 TDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSLK 228 (640)
Q Consensus 153 ~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~----~~~~ 228 (640)
+||+|+|+ .++++|+|+|++|++||.+||+||||||||||+++|+|. ++ +.+|+|++||.++. +.+|
T Consensus 477 ~~vsf~y~-------~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl-~~-p~~G~I~idg~~i~~~~~~~lr 547 (708)
T TIGR01193 477 NDVSYSYG-------YGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGF-FQ-ARSGEILLNGFSLKDIDRHTLR 547 (708)
T ss_pred EEEEEEcC-------CCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhcc-CC-CCCcEEEECCEEHHHcCHHHHH
Confidence 99999982 245799999999999999999999999999999999985 44 45899999999975 3678
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHH-----HHHHHHHHcCCCccccccccCccCCcCCHHHHHH
Q 006571 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (640)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (640)
++||||+|++.+|+. |++|||.++.. + ..++++..+ .+++.++ .++++.||.+|+. ..+||||||||
T Consensus 548 ~~i~~v~Q~~~lf~g-TI~eNi~l~~~---~-~~~~~~i~~a~~~a~l~~~i~--~lp~gldt~i~e~-G~~LSgGQrQR 619 (708)
T TIGR01193 548 QFINYLPQEPYIFSG-SILENLLLGAK---E-NVSQDEIWAACEIAEIKDDIE--NMPLGYQTELSEE-GSSISGGQKQR 619 (708)
T ss_pred HheEEEecCceehhH-HHHHHHhccCC---C-CCCHHHHHHHHHHhCCHHHHH--hcccccCcEecCC-CCCCCHHHHHH
Confidence 999999999999976 99999998631 1 223322221 2333343 3567789999864 46799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHH
Q 006571 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (640)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (640)
++|||||+++|+||+||||||+||+.++..+.+.|+++ +++|+|+++|+++. .+.||+|++|++|++++.|+++++
T Consensus 620 ialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~~--~~~~D~i~~l~~G~i~~~G~~~~L 695 (708)
T TIGR01193 620 IALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLSV--AKQSDKIIVLDHGKIIEQGSHDEL 695 (708)
T ss_pred HHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchHH--HHcCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999999985 48999999999863 578999999999999999999998
Q ss_pred HH
Q 006571 384 MA 385 (640)
Q Consensus 384 ~~ 385 (640)
++
T Consensus 696 ~~ 697 (708)
T TIGR01193 696 LD 697 (708)
T ss_pred Hh
Confidence 75
No 44
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=6.2e-48 Score=440.59 Aligned_cols=357 Identities=20% Similarity=0.281 Sum_probs=246.2
Q ss_pred HhHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchh
Q 006571 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSG 88 (640)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 88 (640)
+..++.+++.++..+...+.....+++|+++.+....+++.+..........+..............+..-..+.-+..|
T Consensus 191 ~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g 270 (582)
T PRK11176 191 NISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPIIQLIASLALAFVLYAA 270 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555677778888889999999999999999988888888766554443322111111111111111111222334456
Q ss_pred hhHhhhhhhhhhhhhccccCC----CCccccccC-------CCCCCCCCccccccccCCCCCCCCCCCCCeeEEEEeEEE
Q 006571 89 AALSRASSASLGLSFSFTGFT----MPPDEIADS-------KPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTY 157 (640)
Q Consensus 89 ~~~~~~~~~~~g~~~~~~~~~----~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vs~ 157 (640)
+..+..|..+.|.+..+..+. .|...+... .+ ...++.+..+..+.........+..+..++++||+|
T Consensus 271 ~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~-~~~ri~~~~~~~~~~~~~~~~~~~~~~~i~~~~vsf 349 (582)
T PRK11176 271 SFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMA-ACQTLFAILDLEQEKDEGKRVIERAKGDIEFRNVTF 349 (582)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCcCCCCCcCCCCCCCeEEEEEEEE
Confidence 666666666667654433221 122111100 00 000011101000000000000111223699999999
Q ss_pred EEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hccCcEEE
Q 006571 158 KVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGF 233 (640)
Q Consensus 158 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~i~y 233 (640)
+|+ ..++++|+|+|++|++||.+||+||||||||||+++|+|.. + +.+|+|.+||.++.+ .+++.|+|
T Consensus 350 ~y~------~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~-~-p~~G~I~i~g~~i~~~~~~~~~~~i~~ 421 (582)
T PRK11176 350 TYP------GKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFY-D-IDEGEILLDGHDLRDYTLASLRNQVAL 421 (582)
T ss_pred ecC------CCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhcc-C-CCCceEEECCEEhhhcCHHHHHhhceE
Confidence 983 13467999999999999999999999999999999999854 3 468999999999853 56889999
Q ss_pred EccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHH-----HHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHH
Q 006571 234 VTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKR-----AIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN 308 (640)
Q Consensus 234 V~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~ 308 (640)
|||++.+|+. |++|||.++. ++..++++..+. ++++++ .|+++.||.+|+. ...||||||||++|||
T Consensus 422 v~Q~~~lf~~-Ti~~Ni~~~~----~~~~~~~~i~~al~~~~l~~~i~--~lp~Gldt~ig~~-g~~LSGGqrQRi~LAR 493 (582)
T PRK11176 422 VSQNVHLFND-TIANNIAYAR----TEQYSREQIEEAARMAYAMDFIN--KMDNGLDTVIGEN-GVLLSGGQRQRIAIAR 493 (582)
T ss_pred EccCceeecc-hHHHHHhcCC----CCCCCHHHHHHHHHHhCcHHHHH--hcccccCceeCCC-CCcCCHHHHHHHHHHH
Confidence 9999999975 9999999852 212233332221 222333 3577889999865 4679999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHH
Q 006571 309 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (640)
Q Consensus 309 aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (640)
||+++|+||+||||||+||+.++..+.+.|+++.+ ++|+|++||+++ ..+.||+|++|++|++++.|+++++++
T Consensus 494 all~~~~ililDEptsaLD~~t~~~i~~~l~~~~~-~~tvI~VtHr~~--~~~~~D~Ii~l~~g~i~e~g~~~~l~~ 567 (582)
T PRK11176 494 ALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLS--TIEKADEILVVEDGEIVERGTHAELLA 567 (582)
T ss_pred HHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEecchH--HHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999998754 799999999985 467899999999999999999999874
No 45
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=1e-45 Score=394.88 Aligned_cols=220 Identities=28% Similarity=0.423 Sum_probs=194.2
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (640)
..|+++||+++| +++.+|+||||+|++||++||+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 40 ~~i~i~nl~k~y--------~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~--p~~G~i~i~G~~~~~~~ 109 (340)
T PRK13536 40 VAIDLAGVSKSY--------GDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTS--PDAGKITVLGVPVPARA 109 (340)
T ss_pred eeEEEEEEEEEE--------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCceEEEECCEECCcch
Confidence 369999999998 35679999999999999999999999999999999999653 468999999998753
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHH
Q 006571 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (640)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (640)
..++.|||++|++.+++.+||.||+.+....+ ..+..+..++++++++.++|.+..++.+ ++||||||||+
T Consensus 110 ~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~-----~~LS~G~kqrv 181 (340)
T PRK13536 110 RLARARIGVVPQFDNLDLEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADARV-----SDLSGGMKRRL 181 (340)
T ss_pred HHHhccEEEEeCCccCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhCCCh-----hhCCHHHHHHH
Confidence 45678999999999999999999999765443 1233445566788999999988777654 68999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHH
Q 006571 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (640)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (640)
+||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||+|++|++|++++.|+++++.
T Consensus 182 ~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~-e~~~~~d~i~il~~G~i~~~g~~~~l~ 260 (340)
T PRK13536 182 TLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLEAGRKIAEGRPHALI 260 (340)
T ss_pred HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999999999999999878999999999975 578899999999999999999999986
Q ss_pred HH
Q 006571 385 AY 386 (640)
Q Consensus 385 ~~ 386 (640)
..
T Consensus 261 ~~ 262 (340)
T PRK13536 261 DE 262 (340)
T ss_pred hh
Confidence 53
No 46
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=8e-46 Score=398.45 Aligned_cols=219 Identities=26% Similarity=0.456 Sum_probs=194.6
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcc--cEEEECCEeCCh
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG--GSITYNDHPYSK 225 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~--G~I~~~G~~~~~ 225 (640)
..|+++||+++| +++.+|+|+||+|++||+++|+|||||||||||++|+|... +.+ |+|.++|+++..
T Consensus 4 ~~l~~~~l~~~~--------~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~~~G~i~~~g~~~~~ 73 (362)
T TIGR03258 4 GGIRIDHLRVAY--------GANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVK--AAGLTGRIAIADRDLTH 73 (362)
T ss_pred eEEEEEEEEEEE--------CCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCCEEEEECCEECCC
Confidence 358999999998 34579999999999999999999999999999999999653 568 999999998753
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHH
Q 006571 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (640)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (640)
..++.||||+|++.+||++||+|||.|+...+ ..++.+.+++++++++.++|.+..++ .+++||||||||
T Consensus 74 ~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~-----~~~~LSgGq~QR 145 (362)
T TIGR03258 74 APPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAH-----LPAQLSGGMQQR 145 (362)
T ss_pred CCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhC-----ChhhCCHHHHHH
Confidence 24578999999999999999999999987543 24556667789999999999887765 457999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChH
Q 006571 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA--GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (640)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~--g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (640)
|+|||||+.+|++|||||||+|||+.++.++.+.|+++.++ |.|+|++||++. ++..+||+|++|++|+++..|+++
T Consensus 146 vaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~-ea~~l~dri~vl~~G~i~~~g~~~ 224 (362)
T TIGR03258 146 IAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQD-DALTLADKAGIMKDGRLAAHGEPQ 224 (362)
T ss_pred HHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHH
Confidence 99999999999999999999999999999999999999876 799999999965 578899999999999999999999
Q ss_pred HHHH
Q 006571 382 EAMA 385 (640)
Q Consensus 382 ~~~~ 385 (640)
++..
T Consensus 225 ~~~~ 228 (362)
T TIGR03258 225 ALYD 228 (362)
T ss_pred HHHh
Confidence 9853
No 47
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.2e-48 Score=416.92 Aligned_cols=217 Identities=33% Similarity=0.567 Sum_probs=186.9
Q ss_pred CeeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC--
Q 006571 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-- 224 (640)
Q Consensus 147 ~~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~-- 224 (640)
+..|+|+||+|+|. ++++||+++||+|++||.+||+|+|||||||++|+|.+ +.+ .+|+|.+||+++.
T Consensus 349 ~~~I~F~dV~f~y~-------~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~Llr-F~d--~sG~I~IdG~dik~~ 418 (591)
T KOG0057|consen 349 GGSIEFDDVHFSYG-------PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLR-FFD--YSGSILIDGQDIKEV 418 (591)
T ss_pred CCcEEEEeeEEEeC-------CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHH-Hhc--cCCcEEECCeeHhhh
Confidence 34699999999992 34569999999999999999999999999999999995 554 5899999999985
Q ss_pred --hhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHH-----HHHHHHHHHHcCCCccccccccCccCCcCC
Q 006571 225 --KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQK-----EKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (640)
Q Consensus 225 --~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~-----~~~v~~~l~~lgL~~~~~t~vg~~~~~~LS 297 (640)
+.+|+.|||||||..||.+ ||.+||.|+.. ..+.++. +...++.+. .++++++|.+|++. ..||
T Consensus 419 ~~~SlR~~Ig~VPQd~~LFnd-TIl~NI~YGn~-----sas~eeV~e~~k~a~~hd~i~--~l~~GY~T~VGerG-~~LS 489 (591)
T KOG0057|consen 419 SLESLRQSIGVVPQDSVLFND-TILYNIKYGNP-----SASDEEVVEACKRAGLHDVIS--RLPDGYQTLVGERG-LMLS 489 (591)
T ss_pred ChHHhhhheeEeCCcccccch-hHHHHhhcCCC-----CcCHHHHHHHHHHcCcHHHHH--hccccchhhHhhcc-cccc
Confidence 3678999999999999975 99999999842 2233332 223444554 45889999999765 4599
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEe
Q 006571 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (640)
Q Consensus 298 GGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (640)
|||||||+||||+++||+|+++|||||+||.+++.++++.+.+.. .++|+|++.|+++ ....||+|++|++|++.+.
T Consensus 490 GGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~-~~rTvI~IvH~l~--ll~~~DkI~~l~nG~v~e~ 566 (591)
T KOG0057|consen 490 GGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVM-SGRTVIMIVHRLD--LLKDFDKIIVLDNGTVKEY 566 (591)
T ss_pred cchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhc-CCCeEEEEEecch--hHhcCCEEEEEECCeeEEe
Confidence 999999999999999999999999999999999999999999944 5899999999976 4688999999999999999
Q ss_pred cChHHHHH
Q 006571 378 GKASEAMA 385 (640)
Q Consensus 378 G~~~~~~~ 385 (640)
|+|+|++.
T Consensus 567 gth~ell~ 574 (591)
T KOG0057|consen 567 GTHSELLA 574 (591)
T ss_pred ccHHHHhh
Confidence 99999986
No 48
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.8e-46 Score=375.77 Aligned_cols=218 Identities=29% Similarity=0.532 Sum_probs=194.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC----
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~---- 224 (640)
.++++|++|+|+ .. +.+|+|+|++|++||.++|+||||||||||+++|+|.+. +.+|.|.++|.++.
T Consensus 3 ~i~~~~l~~~y~------~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~--p~~G~v~~~g~~~~~~~~ 73 (235)
T COG1122 3 MIEAENLSFRYP------GR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLK--PTSGEVLVDGLDTSSEKS 73 (235)
T ss_pred eEEEEEEEEEcC------CC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCc--CCCCEEEECCeeccchhh
Confidence 589999999982 12 689999999999999999999999999999999999764 45899999999865
Q ss_pred -hhccCcEEEEccCC--CCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHH
Q 006571 225 -KSLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (640)
Q Consensus 225 -~~~~~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 301 (640)
..+++++|||+|+| .+|. -||.|.+.|+.... .++.++.++++.++++.+||.+..+. .+..||||||
T Consensus 74 ~~~~~~~vG~VfQnpd~q~~~-~tV~~evafg~~n~---g~~~~e~~~rv~~~l~~vgl~~~~~r-----~p~~LSGGqk 144 (235)
T COG1122 74 LLELRQKVGLVFQNPDDQLFG-PTVEDEVAFGLENL---GLPREEIEERVAEALELVGLEELLDR-----PPFNLSGGQK 144 (235)
T ss_pred HHHhhcceEEEEECccccccc-CcHHHHHhhchhhc---CCCHHHHHHHHHHHHHHcCchhhccC-----CccccCCcce
Confidence 25789999999997 5664 59999999997643 46677889999999999999988765 4689999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecCh
Q 006571 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (640)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (640)
|||+||.+|+.+|++|+|||||+|||+..+.++++.++++.++ |+|||++|||.. .+..+||++++|++|+++++|++
T Consensus 145 qRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~-~~~~~ad~v~vl~~G~i~~~g~p 223 (235)
T COG1122 145 QRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE-LVLEYADRVVVLDDGKILADGDP 223 (235)
T ss_pred eeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH-HHHhhCCEEEEEECCEEeecCCH
Confidence 9999999999999999999999999999999999999999877 789999999965 57888999999999999999999
Q ss_pred HHHHH
Q 006571 381 SEAMA 385 (640)
Q Consensus 381 ~~~~~ 385 (640)
.++..
T Consensus 224 ~~i~~ 228 (235)
T COG1122 224 AEIFN 228 (235)
T ss_pred HHHhh
Confidence 88764
No 49
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.6e-46 Score=369.35 Aligned_cols=221 Identities=28% Similarity=0.434 Sum_probs=189.9
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++|+++.|..+. ...++|+||||+|.+||+++|+|+||||||||.++|+|... +.+|+|.++|++..+
T Consensus 3 ~l~v~nl~~~y~~~~----~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~--p~~G~I~~~G~~~~~~~~ 76 (252)
T COG1124 3 LLSVRNLSIVYGGGK----FAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEK--PSSGSILLDGKPLAPKKR 76 (252)
T ss_pred eEEEeceEEEecCCc----chhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccC--CCCceEEECCcccCcccc
Confidence 689999999994221 12369999999999999999999999999999999999543 468999999987754
Q ss_pred --hccCcEEEEccCC--CCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHH
Q 006571 226 --SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (640)
Q Consensus 226 --~~~~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 301 (640)
..++.|-+||||| .+.|..||++.|.-+... .+.++. ++++.++++.+||++..- ++++.+||||||
T Consensus 77 ~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~---~~~~~~--~~~i~~~L~~VgL~~~~l----~R~P~eLSGGQ~ 147 (252)
T COG1124 77 AKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRP---HGLSKS--QQRIAELLDQVGLPPSFL----DRRPHELSGGQR 147 (252)
T ss_pred chhhccceeEEecCCccccCcchhHHHHHhhhhcc---CCccHH--HHHHHHHHHHcCCCHHHH----hcCchhcChhHH
Confidence 3578899999997 588999999999877643 233333 334899999999976432 356789999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecCh
Q 006571 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (640)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (640)
|||+|||||+.+|++||||||||+||+..+.+|+++|.++.++ +.|.|+++||.. .+..+||||+||++|++++.++.
T Consensus 148 QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~-~v~~~cdRi~Vm~~G~ivE~~~~ 226 (252)
T COG1124 148 QRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLA-LVEHMCDRIAVMDNGQIVEIGPT 226 (252)
T ss_pred HHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHH-HHHHHhhheeeeeCCeEEEeech
Confidence 9999999999999999999999999999999999999999864 789999999965 58889999999999999999999
Q ss_pred HHHHH
Q 006571 381 SEAMA 385 (640)
Q Consensus 381 ~~~~~ 385 (640)
+++..
T Consensus 227 ~~l~~ 231 (252)
T COG1124 227 EELLS 231 (252)
T ss_pred hhhhc
Confidence 99864
No 50
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.5e-47 Score=436.61 Aligned_cols=349 Identities=22% Similarity=0.321 Sum_probs=245.1
Q ss_pred HhHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchh
Q 006571 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSG 88 (640)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 88 (640)
+..++.++..++.++...|.++..+++|+|+.+..+.+++.+......+...+.....+...........-..+.-+..|
T Consensus 187 ~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g 266 (574)
T PRK11160 187 KPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANLTGLSQALMILANGLTVVLMLWLA 266 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566678888999999999999999999999988888888766655444332211111110111111111112223455
Q ss_pred hhHhhhhhhhhhhhhccccCC-----CCcc------------ccccCCCCCCCCCccccccccCCCCCCCCCCCCCeeEE
Q 006571 89 AALSRASSASLGLSFSFTGFT-----MPPD------------EIADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLK 151 (640)
Q Consensus 89 ~~~~~~~~~~~g~~~~~~~~~-----~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 151 (640)
+.+. .+..+.|.+.+|..+. .|.. ..+..+.....+.++..+. +.....+.....|+
T Consensus 267 ~~~~-~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~-----~~~~~~~~~~~~i~ 340 (574)
T PRK11160 267 AGGV-GGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPEVTF-----PTTSTAAADQVSLT 340 (574)
T ss_pred HHHh-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC-----CcccCCCCCCCeEE
Confidence 5443 3455566655543221 0111 1111111111111111000 00000011224699
Q ss_pred EEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hc
Q 006571 152 FTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SL 227 (640)
Q Consensus 152 ~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~~ 227 (640)
|+||+|+|+ .+++++|+|+||+++|||.+||+||||||||||+++|+|. ++ +.+|+|.+||.++.+ .+
T Consensus 341 ~~~v~f~y~------~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~-~~-p~~G~I~i~g~~i~~~~~~~~ 412 (574)
T PRK11160 341 LNNVSFTYP------DQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRA-WD-PQQGEILLNGQPIADYSEAAL 412 (574)
T ss_pred EEEEEEECC------CCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcC-CC-CCCceEEECCEEhhhCCHHHH
Confidence 999999983 1235799999999999999999999999999999999985 43 468999999999853 57
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCC------CccccccccCccCCcCCHHHH
Q 006571 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL------ERCQDTMIGGSFVRGVSGGER 301 (640)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL------~~~~~t~vg~~~~~~LSGGqr 301 (640)
|++|+||+|++.+|+. |++|||.++. + ..++ +++.++++..++ +++.||.+|+. ...||||||
T Consensus 413 r~~i~~v~Q~~~lf~~-ti~~Ni~~~~----~-~~~~----~~i~~al~~~~l~~~i~~p~GldT~vge~-g~~LSgGqr 481 (574)
T PRK11160 413 RQAISVVSQRVHLFSA-TLRDNLLLAA----P-NASD----EALIEVLQQVGLEKLLEDDKGLNAWLGEG-GRQLSGGEQ 481 (574)
T ss_pred HhheeEEcccchhhcc-cHHHHhhcCC----C-ccCH----HHHHHHHHHcCCHHHHcCccccCchhcCC-CCCCCHHHH
Confidence 8899999999999975 9999999863 1 1222 334555555554 56678998865 467999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChH
Q 006571 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (640)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (640)
||++|||||+++|++|+||||||+||+.++..+.+.|+++. +++|+|+++|+++. ...||+|++|++|++++.|+|+
T Consensus 482 qRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~~--~~~~d~i~~l~~G~i~~~g~~~ 558 (574)
T PRK11160 482 RRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLTG--LEQFDRICVMDNGQIIEQGTHQ 558 (574)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChhH--HHhCCEEEEEeCCeEEEeCCHH
Confidence 99999999999999999999999999999999999999986 48999999999864 4679999999999999999999
Q ss_pred HHHH
Q 006571 382 EAMA 385 (640)
Q Consensus 382 ~~~~ 385 (640)
|+++
T Consensus 559 ~l~~ 562 (574)
T PRK11160 559 ELLA 562 (574)
T ss_pred HHHh
Confidence 9874
No 51
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=1.7e-45 Score=395.03 Aligned_cols=220 Identities=25% Similarity=0.471 Sum_probs=192.9
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--h
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--~ 226 (640)
.|+++||+++| +++.+|+|+||+|++||+++|+||||||||||||+|+|... +.+|+|+++|+++.. .
T Consensus 2 ~L~i~~l~~~~--------~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i~~~~~ 71 (353)
T PRK10851 2 SIEIANIKKSF--------GRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH--QTSGHIRFHGTDVSRLHA 71 (353)
T ss_pred EEEEEEEEEEe--------CCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCCCCH
Confidence 48999999998 34579999999999999999999999999999999999643 568999999998753 3
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCC-CCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHH
Q 006571 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (640)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (640)
.++.|+||+|++.+||++||+||+.|+...... ...+.++..+++.++++.++|++..+. ++..|||||||||+
T Consensus 72 ~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----~~~~LSgGq~QRva 146 (353)
T PRK10851 72 RDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADR-----YPAQLSGGQKQRVA 146 (353)
T ss_pred HHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhC-----ChhhCCHHHHHHHH
Confidence 357899999999999999999999998653211 123455667789999999999876665 45789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHH
Q 006571 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (640)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (640)
|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |+|+|++||++. ++..+||+|++|++|++++.|+++++.
T Consensus 147 lArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~-ea~~~~Dri~vl~~G~i~~~g~~~~i~ 225 (353)
T PRK10851 147 LARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE-EAMEVADRVVVMSQGNIEQAGTPDQVW 225 (353)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999999875 899999999975 578899999999999999999999885
No 52
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=2e-45 Score=396.93 Aligned_cols=218 Identities=25% Similarity=0.440 Sum_probs=193.8
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (640)
..|+++|++++| +++.+|+|+||++++||+++|+|||||||||||++|+|... +.+|+|.++|+++..
T Consensus 13 ~~L~l~~l~~~~--------~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i~~~~ 82 (375)
T PRK09452 13 PLVELRGISKSF--------DGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET--PDSGRIMLDGQDITHVP 82 (375)
T ss_pred ceEEEEEEEEEE--------CCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECCCCC
Confidence 369999999998 34579999999999999999999999999999999999653 568999999998753
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHH
Q 006571 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (640)
Q Consensus 226 ~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (640)
..++.+|||+|++.+||++||+|||.|+...+ ..+..+.+++++++++.++|.+..+. .+.+|||||||||+
T Consensus 83 ~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~-----~p~~LSgGq~QRVa 154 (375)
T PRK09452 83 AENRHVNTVFQSYALFPHMTVFENVAFGLRMQ---KTPAAEITPRVMEALRMVQLEEFAQR-----KPHQLSGGQQQRVA 154 (375)
T ss_pred HHHCCEEEEecCcccCCCCCHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhC-----ChhhCCHHHHHHHH
Confidence 34678999999999999999999999986532 23455666788999999999877765 45789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHH
Q 006571 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (640)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (640)
|||||+.+|++|||||||++||+.++..+.+.|+++.++ |.|+|++||++. ++..++|+|++|++|+++..|+++++.
T Consensus 155 LARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~-ea~~laDri~vl~~G~i~~~g~~~~i~ 233 (375)
T PRK09452 155 IARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE-EALTMSDRIVVMRDGRIEQDGTPREIY 233 (375)
T ss_pred HHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999999865 899999999965 578899999999999999999999875
No 53
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=1.8e-45 Score=387.92 Aligned_cols=218 Identities=28% Similarity=0.419 Sum_probs=190.8
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++||+++| +++.+|+||||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 4 ~i~~~~l~~~~--------~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~ 73 (303)
T TIGR01288 4 AIDLVGVSKSY--------GDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS--PDRGKITVLGEPVPSRAR 73 (303)
T ss_pred EEEEEeEEEEe--------CCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECcccHH
Confidence 58999999998 34579999999999999999999999999999999999653 468999999998742
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHH
Q 006571 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (640)
Q Consensus 226 ~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (640)
..++.+||++|++.+++.+||+||+.+..... ..+..+..++++++++.++|.+..++. +..||||||||++
T Consensus 74 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~l~~~~~~~-----~~~LSgG~~qrv~ 145 (303)
T TIGR01288 74 LARVAIGVVPQFDNLDPEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADVR-----VALLSGGMKRRLT 145 (303)
T ss_pred HHhhcEEEEeccccCCcCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCc-----hhhCCHHHHHHHH
Confidence 34678999999999999999999998754432 123344456678899999998777765 4689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHH
Q 006571 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (640)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (640)
|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||+|++|++|++++.|+++++..
T Consensus 146 la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 146 LARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred HHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999999999999878999999999975 5778999999999999999999998864
No 54
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.2e-45 Score=369.44 Aligned_cols=215 Identities=28% Similarity=0.474 Sum_probs=186.8
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---h
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---S 226 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---~ 226 (640)
|+++|++++| +++++|+|+||++++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++.. .
T Consensus 1 i~~~~~~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~ 70 (220)
T cd03265 1 IEVENLVKKY--------GDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK--PTSGRATVAGHDVVREPRE 70 (220)
T ss_pred CEEEEEEEEE--------CCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEecCcChHH
Confidence 4789999998 34579999999999999999999999999999999999653 568999999987642 3
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHH
Q 006571 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (640)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (640)
.++.++|++|++.+++.+||+||+.+....+ .....+..+++.++++.++|++..++. +..||||||||++|
T Consensus 71 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr~~l 142 (220)
T cd03265 71 VRRRIGIVFQDLSVDDELTGWENLYIHARLY---GVPGAERRERIDELLDFVGLLEAADRL-----VKTYSGGMRRRLEI 142 (220)
T ss_pred HhhcEEEecCCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCC-----hhhCCHHHHHHHHH
Confidence 4578999999999999999999999875432 123344556788999999998766654 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHH
Q 006571 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (640)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (640)
||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++...||++++|++|++++.|+++++
T Consensus 143 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 143 ARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred HHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 99999999999999999999999999999999999876 899999999975 47788999999999999999988764
No 55
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=2e-45 Score=373.24 Aligned_cols=219 Identities=30% Similarity=0.483 Sum_probs=187.0
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (640)
|+++||+++| +++++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 1 l~~~~l~~~~--------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~ 70 (236)
T cd03219 1 LEVRGLTKRF--------GGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR--PTSGSVLFDGEDITGLPPH 70 (236)
T ss_pred CeeeeeEEEE--------CCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEECCCCCHH
Confidence 4689999998 24569999999999999999999999999999999999653 568999999998753
Q ss_pred h-ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCC-------ccHHHHHHHHHHHHHHcCCCccccccccCccCCcCC
Q 006571 226 S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNT-------LTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (640)
Q Consensus 226 ~-~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~-------~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LS 297 (640)
. .++.++|++|++.+++.+||+||+.++........ ....+..++++++++.+||.+..++. ++.||
T Consensus 71 ~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 145 (236)
T cd03219 71 EIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRP-----AGELS 145 (236)
T ss_pred HHHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCC-----hhhCC
Confidence 1 24569999999999999999999998754321110 01334456788999999998766553 47899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEe
Q 006571 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (640)
Q Consensus 298 GGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (640)
|||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||++++|++|++++.
T Consensus 146 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~G~i~~~ 224 (236)
T cd03219 146 YGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD-VVMSLADRVTVLDQGRVIAE 224 (236)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEee
Confidence 99999999999999999999999999999999999999999999877999999999976 46788999999999999999
Q ss_pred cChHHHH
Q 006571 378 GKASEAM 384 (640)
Q Consensus 378 G~~~~~~ 384 (640)
|+++++.
T Consensus 225 ~~~~~~~ 231 (236)
T cd03219 225 GTPDEVR 231 (236)
T ss_pred cCHHHhc
Confidence 9988763
No 56
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-45 Score=392.17 Aligned_cols=221 Identities=24% Similarity=0.403 Sum_probs=191.3
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
+|+++||+++|..+ ..++++|+|+||+|++||+++|+||||||||||+|+|+|.+. +.+|+|.++|+++..
T Consensus 1 mi~i~~l~~~y~~~----~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~--p~~G~I~~~g~~i~~~~~ 74 (343)
T PRK11153 1 MIELKNISKVFPQG----GRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER--PTSGRVLVDGQDLTALSE 74 (343)
T ss_pred CEEEEeEEEEeCCC----CCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECCcCCH
Confidence 37899999998310 124579999999999999999999999999999999999653 568999999998742
Q ss_pred ----hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHH
Q 006571 226 ----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (640)
Q Consensus 226 ----~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 301 (640)
..++.||||+|++.+++.+||+||+.++.... ..+..+..+++.++++.+||.+..++. +.+||||||
T Consensus 75 ~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LSgGq~ 146 (343)
T PRK11153 75 KELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELA---GTPKAEIKARVTELLELVGLSDKADRY-----PAQLSGGQK 146 (343)
T ss_pred HHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHHH
Confidence 23678999999999999999999999876532 234455567788999999998766653 568999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecCh
Q 006571 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (640)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (640)
|||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+.++||+|++|++|++++.|++
T Consensus 147 qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~l~~G~i~~~g~~ 225 (343)
T PRK11153 147 QRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAVIDAGRLVEQGTV 225 (343)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCH
Confidence 9999999999999999999999999999999999999999765 899999999975 57788999999999999999999
Q ss_pred HHHH
Q 006571 381 SEAM 384 (640)
Q Consensus 381 ~~~~ 384 (640)
+++.
T Consensus 226 ~~~~ 229 (343)
T PRK11153 226 SEVF 229 (343)
T ss_pred HHHH
Confidence 8875
No 57
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=1.6e-45 Score=369.20 Aligned_cols=209 Identities=27% Similarity=0.473 Sum_probs=179.5
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
+|+++||+++|. .+.+++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 1 ~l~~~~l~~~~~------~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~ 72 (216)
T TIGR00960 1 MIRFEQVSKAYP------GGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEK--PTRGKIRFNGQDLTRLRG 72 (216)
T ss_pred CeEEEEEEEEec------CCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEehhhcCh
Confidence 378999999982 112469999999999999999999999999999999999643 468999999998742
Q ss_pred ----hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHH
Q 006571 226 ----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (640)
Q Consensus 226 ----~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 301 (640)
.+++.++|++|++.+++.+||+||+.++...+ .....+.++++.++++.+||.+..++. +..||||||
T Consensus 73 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~ 144 (216)
T TIGR00960 73 REIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRII---GVPPRDANERVSAALEKVGLEGKAHAL-----PMQLSGGEQ 144 (216)
T ss_pred hHHHHHHHhceEEecCccccccccHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHH
Confidence 24678999999999999999999999875432 123344556788999999998766654 468999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeE
Q 006571 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (640)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~i 374 (640)
|||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+..+||++++|++|++
T Consensus 145 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 145 QRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN-LVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999999999999999999999877899999999975 46678999999999975
No 58
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.6e-45 Score=394.57 Aligned_cols=219 Identities=26% Similarity=0.459 Sum_probs=194.0
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (640)
..|+++||+++| +++.+|+|+||+|++||+++|+|||||||||||++|+|... +.+|+|.++|+++..
T Consensus 18 ~~l~l~~v~~~~--------~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i~~~~ 87 (377)
T PRK11607 18 PLLEIRNLTKSF--------DGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ--PTAGQIMLDGVDLSHVP 87 (377)
T ss_pred ceEEEEeEEEEE--------CCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECCCCC
Confidence 369999999998 34579999999999999999999999999999999999653 568999999998753
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHH
Q 006571 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (640)
Q Consensus 226 ~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (640)
..++.||||+|++.+||++||.|||.|+...+ ..++.+.++++.++++.++|.+..+. .+.+|||||||||+
T Consensus 88 ~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~l~L~~~~~~-----~~~~LSgGq~QRVa 159 (377)
T PRK11607 88 PYQRPINMMFQSYALFPHMTVEQNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAKR-----KPHQLSGGQRQRVA 159 (377)
T ss_pred HHHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcC-----ChhhCCHHHHHHHH
Confidence 34678999999999999999999999986543 23456667789999999999876664 45789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHH
Q 006571 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (640)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (640)
|||||+.+|++|||||||++||+.++..+.+.|+++.+ .|.|+|++||++. ++..++|+|++|++|+++..|+++++.
T Consensus 160 LARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDri~vl~~G~i~~~g~~~~~~ 238 (377)
T PRK11607 160 LARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGRIAIMNRGKFVQIGEPEEIY 238 (377)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEeCCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999999875 4899999999965 578999999999999999999999875
Q ss_pred H
Q 006571 385 A 385 (640)
Q Consensus 385 ~ 385 (640)
.
T Consensus 239 ~ 239 (377)
T PRK11607 239 E 239 (377)
T ss_pred h
Confidence 3
No 59
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.7e-45 Score=372.53 Aligned_cols=220 Identities=25% Similarity=0.459 Sum_probs=187.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--h
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--~ 226 (640)
.|+++||+++| +++++|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. .
T Consensus 2 ~l~~~~l~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~ 71 (239)
T cd03296 2 SIEVRNVSKRF--------GDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER--PDSGTILFGGEDATDVPV 71 (239)
T ss_pred EEEEEeEEEEE--------CCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCCc
Confidence 48999999998 24579999999999999999999999999999999999643 468999999998743 2
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCC-CCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHH
Q 006571 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (640)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (640)
.++.++||+|++.+++.+||+||+.++...... ......+..++++++++.+||.+..++. +..||||||||++
T Consensus 72 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~ 146 (239)
T cd03296 72 QERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRY-----PAQLSGGQRQRVA 146 (239)
T ss_pred cccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcC-----hhhCCHHHHHHHH
Confidence 356799999999999889999999987543211 0012333455678899999997666543 4689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHH
Q 006571 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (640)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (640)
|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+.+.||++++|++|++++.|+++++.
T Consensus 147 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (239)
T cd03296 147 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE-EALEVADRVVVMNKGRIEQVGTPDEVY 225 (239)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEecCHHHHh
Confidence 999999999999999999999999999999999999865 899999999975 467889999999999999999988763
No 60
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.6e-45 Score=366.95 Aligned_cols=210 Identities=31% Similarity=0.537 Sum_probs=181.4
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--hc
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SL 227 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--~~ 227 (640)
++++||+++| +++++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++.. ..
T Consensus 1 l~~~~l~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~~ 70 (213)
T cd03259 1 LELKGLSKTY--------GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER--PDSGEILIDGRDVTGVPPE 70 (213)
T ss_pred CeeeeeEEEe--------CCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcCcCchh
Confidence 4689999998 24579999999999999999999999999999999999653 568999999998743 23
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHH
Q 006571 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (640)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (640)
++.++||+|++.+++.+||+||+.++.... ........+++.++++.++|.+..++. +..||||||||++||
T Consensus 71 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrl~la 142 (213)
T cd03259 71 RRNIGMVFQDYALFPHLTVAENIAFGLKLR---GVPKAEIRARVRELLELVGLEGLLNRY-----PHELSGGQQQRVALA 142 (213)
T ss_pred hccEEEEcCchhhccCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhcC-----hhhCCHHHHHHHHHH
Confidence 567999999999999999999999875432 123344556788999999998766654 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEec
Q 006571 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (640)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (640)
|||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++. .+.++||+|++|++|++++.|
T Consensus 143 ~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 143 RALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE-EALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999976 4899999999975 467889999999999998765
No 61
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.9e-45 Score=381.33 Aligned_cols=235 Identities=31% Similarity=0.445 Sum_probs=195.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC----
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~---- 224 (640)
+|+++||+|+|..+ ....+.+|+||||+|++||+++|+||||||||||+++|+|.+. +.+|+|+++|.++.
T Consensus 1 mi~~~~v~~~y~~~---~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~ 75 (288)
T PRK13643 1 MIKFEKVNYTYQPN---SPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ--PTEGKVTVGDIVVSSTSK 75 (288)
T ss_pred CEEEEEEEEEeCCC---CcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC--CCCcEEEECCEECccccc
Confidence 47999999998311 0112469999999999999999999999999999999999653 46899999999873
Q ss_pred ----hhccCcEEEEccCC--CCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCccCCcCC
Q 006571 225 ----KSLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVS 297 (640)
Q Consensus 225 ----~~~~~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LS 297 (640)
..+++.+|||+|++ .+|+ .||.||+.|+.... ..+..+.++++.++++.+||. +..++ .++.||
T Consensus 76 ~~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~~LS 146 (288)
T PRK13643 76 QKEIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWEK-----SPFELS 146 (288)
T ss_pred cccHHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhccC-----CcccCC
Confidence 13467899999986 5675 59999999876432 234556677889999999995 34443 457899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEe
Q 006571 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (640)
Q Consensus 298 GGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (640)
||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||+|++|++|++++.
T Consensus 147 gGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~-~~~~~~dri~~l~~G~i~~~ 225 (288)
T PRK13643 147 GGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADYVYLLEKGHIISC 225 (288)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999999877999999999975 46788999999999999999
Q ss_pred cChHHHHH---HHHhcCCCCCCCC
Q 006571 378 GKASEAMA---YFSSIGCSPQIAM 398 (640)
Q Consensus 378 G~~~~~~~---~f~~~g~~~~~~~ 398 (640)
|+++++.. ++...|+.+|...
T Consensus 226 g~~~~~~~~~~~~~~~~~~~p~~~ 249 (288)
T PRK13643 226 GTPSDVFQEVDFLKAHELGVPKAT 249 (288)
T ss_pred CCHHHHHcCHHHHHHcCCCCChHH
Confidence 99998753 3456677666443
No 62
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=3.6e-45 Score=370.47 Aligned_cols=216 Identities=27% Similarity=0.512 Sum_probs=186.9
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (640)
|+++||+++| +++.+|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 1 l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~ 70 (232)
T cd03218 1 LRAENLSKRY--------GKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK--PDSGKILLDGQDITKLPMH 70 (232)
T ss_pred CeEEEEEEEe--------CCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecccCCHh
Confidence 4789999998 34579999999999999999999999999999999999653 568999999998642
Q ss_pred h-ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHH
Q 006571 226 S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (640)
Q Consensus 226 ~-~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (640)
. .++.++|++|++.+++.+||+||+.+....+ .....+..++++++++.+++.+..++. +..||||||||+
T Consensus 71 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl 142 (232)
T cd03218 71 KRARLGIGYLPQEASIFRKLTVEENILAVLEIR---GLSKKEREEKLEELLEEFHITHLRKSK-----ASSLSGGERRRV 142 (232)
T ss_pred HHHhccEEEecCCccccccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHHHHH
Confidence 1 2457999999999999999999999865432 123344556788999999998766653 468999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHH
Q 006571 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (640)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (640)
+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.||++++|++|++++.|+++++.
T Consensus 143 ~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 221 (232)
T cd03218 143 EIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR-ETLSITDRAYIIYEGKVLAEGTPEEIA 221 (232)
T ss_pred HHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEEeCHHHhh
Confidence 9999999999999999999999999999999999999877999999999975 578899999999999999999988763
No 63
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=6.6e-47 Score=428.91 Aligned_cols=355 Identities=25% Similarity=0.335 Sum_probs=249.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchhhh
Q 006571 11 ARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGAA 90 (640)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 90 (640)
.++.++..++..+...|...+.+|+|+|+.+....+++.+......+...+.....+........+..-..+.-+..|+.
T Consensus 169 ~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 248 (544)
T TIGR01842 169 LKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIVLQSLVLGLGAY 248 (544)
T ss_pred HHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666777778888999999999999999888888876655443332211111111111111222223344568888
Q ss_pred HhhhhhhhhhhhhccccCCC----CccccccCC------CCCCCCCccccccccCCCCCCCCCCCCCeeEEEEeEEEEEe
Q 006571 91 LSRASSASLGLSFSFTGFTM----PPDEIADSK------PFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVI 160 (640)
Q Consensus 91 ~~~~~~~~~g~~~~~~~~~~----~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vs~~~~ 160 (640)
++..|..+.|.++++..+.. |...+.... ..+..++.+-++..+...+.. ..+.....++++||+|+|+
T Consensus 249 l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~-~~~~~~~~i~~~~v~~~y~ 327 (544)
T TIGR01842 249 LAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPAM-PLPEPEGHLSVENVTIVPP 327 (544)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCCC-CCCCCCCeEEEEEEEEEcC
Confidence 88888888888877764332 111111000 000000111111110000000 0111123699999999983
Q ss_pred eccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hccCcEEEEcc
Q 006571 161 LKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQ 236 (640)
Q Consensus 161 ~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~i~yV~Q 236 (640)
.+++++|+|+|++++|||.++|+||||||||||+++|+|.. + +.+|+|.+||.++.+ .+++.++||+|
T Consensus 328 ------~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~-~-~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q 399 (544)
T TIGR01842 328 ------GGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIW-P-PTSGSVRLDGADLKQWDRETFGKHIGYLPQ 399 (544)
T ss_pred ------CCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-C-CCCceEEECCEehhhCCHHHHhhheEEecC
Confidence 12457999999999999999999999999999999999954 3 468999999998753 56789999999
Q ss_pred CCCCCCCCCHHHHHHHHHhccCCCCccHHHHH-----HHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHh
Q 006571 237 DDVLFPHLTVKETLTYAALLRLPNTLTKQQKE-----KRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII 311 (640)
Q Consensus 237 ~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~-----~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~ 311 (640)
++.+|+. |++||+.++.. ..++++.. ...+++++.+ ++..||.+|.. ...||||||||++|||||+
T Consensus 400 ~~~lf~~-ti~~Ni~~~~~-----~~~~~~~~~~~~~~~~~~~i~~l--~~gl~t~~~~~-g~~LSgGq~qrl~lARall 470 (544)
T TIGR01842 400 DVELFPG-TVAENIARFGE-----NADPEKIIEAAKLAGVHELILRL--PDGYDTVIGPG-GATLSGGQRQRIALARALY 470 (544)
T ss_pred Ccccccc-cHHHHHhccCC-----CCCHHHHHHHHHHhChHHHHHhC--ccccccccCCC-cCCCCHHHHHHHHHHHHHh
Confidence 9999986 99999986421 12232221 2234455543 56678888754 5679999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHH
Q 006571 312 INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (640)
Q Consensus 312 ~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (640)
++|++|+|||||+|||+.++..+.+.|+++..+|+|+|+++|+++ ..+.||+|++|++|++++.|+++++.+
T Consensus 471 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~--~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 471 GDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPS--LLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred cCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 999999999999999999999999999998766899999999986 357899999999999999999998753
No 64
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5e-45 Score=394.02 Aligned_cols=217 Identities=28% Similarity=0.485 Sum_probs=191.5
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--h
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--~ 226 (640)
.|+++||+++| +++.+|+|+||+|++||+++|+|||||||||||++|+|... +++|+|.++|+++.. .
T Consensus 3 ~l~i~~l~~~~--------~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~--p~~G~I~~~g~~i~~~~~ 72 (369)
T PRK11000 3 SVTLRNVTKAY--------GDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED--ITSGDLFIGEKRMNDVPP 72 (369)
T ss_pred EEEEEEEEEEe--------CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECCCCCH
Confidence 48999999998 34579999999999999999999999999999999999653 468999999998753 2
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHH
Q 006571 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (640)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (640)
.++.|+||+|++.+|+.+||+||+.|+...+ ..+..+.+++++++++.+||.+..++. +.+|||||||||+|
T Consensus 73 ~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~lgL~~~~~~~-----~~~LSgGq~QRvaL 144 (369)
T PRK11000 73 AERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEEINQRVNQVAEVLQLAHLLDRK-----PKALSGGQRQRVAI 144 (369)
T ss_pred hHCCEEEEeCCcccCCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhhhcCC-----hhhCCHHHHHHHHH
Confidence 3567999999999999999999999986533 234455667889999999998766654 56899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHH
Q 006571 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (640)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (640)
||||+.+|++|||||||+|||+.++..+.+.|+++.++ |.|+|++||++. ++..+||+|++|++|+++..|+++++.
T Consensus 145 AraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~i~vl~~G~i~~~g~~~~i~ 222 (369)
T PRK11000 145 GRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGRVAQVGKPLELY 222 (369)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999999765 899999999975 577899999999999999999999875
No 65
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4e-45 Score=370.61 Aligned_cols=220 Identities=27% Similarity=0.425 Sum_probs=187.9
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (640)
|+++|++++|..+ .+.+++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 2 i~~~~l~~~~~~~----~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~ 75 (233)
T cd03258 2 IELKNVSKVFGDT----GGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER--PTSGSVLVDGTDLTLLSGK 75 (233)
T ss_pred eEEecceEEccCC----CCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcccCCHH
Confidence 7899999998210 011379999999999999999999999999999999999653 568999999998742
Q ss_pred ---hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHH
Q 006571 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (640)
Q Consensus 226 ---~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (640)
..++.++|++|++.+++.+|++||+.+....+ ........+.+.++++.++|.+..+.. +..|||||||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~q 147 (233)
T cd03258 76 ELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIA---GVPKAEIEERVLELLELVGLEDKADAY-----PAQLSGGQKQ 147 (233)
T ss_pred HHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhcC-----hhhCCHHHHH
Confidence 23578999999999999999999999875432 123444556788999999998766653 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChH
Q 006571 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (640)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (640)
|++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+.++||++++|++|++++.|+++
T Consensus 148 rv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~ 226 (233)
T cd03258 148 RVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDRVAVMEKGEVVEEGTVE 226 (233)
T ss_pred HHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecCHH
Confidence 999999999999999999999999999999999999999765 899999999975 467889999999999999999988
Q ss_pred HHH
Q 006571 382 EAM 384 (640)
Q Consensus 382 ~~~ 384 (640)
++.
T Consensus 227 ~~~ 229 (233)
T cd03258 227 EVF 229 (233)
T ss_pred HHh
Confidence 764
No 66
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.2e-45 Score=365.53 Aligned_cols=210 Identities=30% Similarity=0.573 Sum_probs=183.1
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccC
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~ 229 (640)
|+++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|+++....++
T Consensus 1 l~~~~l~~~~--------~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~ 70 (210)
T cd03269 1 LEVENVTKRF--------GRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL--PDSGEVLFDGKPLDIAARN 70 (210)
T ss_pred CEEEEEEEEE--------CCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCCchhHHHHc
Confidence 4789999998 24579999999999999999999999999999999999653 5689999999987655677
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHH
Q 006571 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (640)
Q Consensus 230 ~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~a 309 (640)
.++|++|++.+++.+||+||+.+....+ .....+..+++.++++.+||.+..++. +.+||||||||++|||+
T Consensus 71 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~la~a 142 (210)
T cd03269 71 RIGYLPEERGLYPKMKVIDQLVYLAQLK---GLKKEEARRRIDEWLERLELSEYANKR-----VEELSKGNQQKVQFIAA 142 (210)
T ss_pred cEEEeccCCcCCcCCcHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCChHHHhCc-----HhhCCHHHHHHHHHHHH
Confidence 8999999999999999999999865433 123344556788999999998766653 46899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEec
Q 006571 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (640)
Q Consensus 310 L~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (640)
|+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++. .+.++||++++|++|++++.|
T Consensus 143 l~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 143 VIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQME-LVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999999999999877899999999975 466789999999999998764
No 67
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=7.8e-47 Score=439.77 Aligned_cols=351 Identities=23% Similarity=0.335 Sum_probs=250.8
Q ss_pred hHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchhh
Q 006571 10 LARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGA 89 (640)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 89 (640)
..+..+++-++..+...|...+.+|+|+++.+....+++.+..........+.....+.........+.-..+.-++.|+
T Consensus 305 ~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~ 384 (694)
T TIGR01846 305 RVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWFGA 384 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 44455666777888889999999999999999999888887776554433321111111100111111122334456888
Q ss_pred hHhhhhhhhhhhhhccccCCC----Cccccc------------cCCCCCCCCCccccccccCCCCCCCCCCCCCeeEEEE
Q 006571 90 ALSRASSASLGLSFSFTGFTM----PPDEIA------------DSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFT 153 (640)
Q Consensus 90 ~~~~~~~~~~g~~~~~~~~~~----~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 153 (640)
.++..|..+.|.+..|..+.. |...+. ..+.....+.+++.+. ......+.....|+++
T Consensus 385 ~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~-----~~~~~~~~~~~~i~~~ 459 (694)
T TIGR01846 385 HLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRS-----AGLAALPELRGAITFE 459 (694)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccC-----CCCCCCCCCCCeEEEE
Confidence 888888888888777664321 211111 1111111111111000 0000112223469999
Q ss_pred eEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hccC
Q 006571 154 DVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKS 229 (640)
Q Consensus 154 ~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~ 229 (640)
||+|+|+ ..++++|+|+|++|+|||.+||+|+||||||||+|+|+|.. + +.+|+|.+||.++.+ .+|+
T Consensus 460 ~vsf~y~------~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~-~-p~~G~I~idg~~i~~~~~~~~r~ 531 (694)
T TIGR01846 460 NIRFRYA------PDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLY-T-PQHGQVLVDGVDLAIADPAWLRR 531 (694)
T ss_pred EEEEEcC------CCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCC-C-CCCceEEECCEehhhCCHHHHHH
Confidence 9999983 13457999999999999999999999999999999999854 3 458999999999853 5788
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHH-----HHHHHHHHcCCCccccccccCccCCcCCHHHHHHH
Q 006571 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (640)
Q Consensus 230 ~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (640)
.|+||+|++.+|+. |++|||.++. + ..+.++..+ .+++.++. |+++.||.+|+. ..+||||||||+
T Consensus 532 ~i~~v~q~~~lf~~-ti~eNi~~~~----~-~~~~~~i~~a~~~~~l~~~i~~--lp~gl~t~i~~~-g~~LSgGq~qri 602 (694)
T TIGR01846 532 QMGVVLQENVLFSR-SIRDNIALCN----P-GAPFEHVIHAAKLAGAHDFISE--LPQGYNTEVGEK-GANLSGGQRQRI 602 (694)
T ss_pred hCeEEccCCeehhh-hHHHHHhcCC----C-CCCHHHHHHHHHHcChHHHHHh--CcCccCcEecCC-CCCCCHHHHHHH
Confidence 99999999999975 9999998752 1 123332222 22333433 466789998765 467999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHH
Q 006571 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (640)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (640)
+|||||+++|+|||||||||+||+.++..+.+.|+++. .++|+|++||+++. .+.||+|++|++|++++.|++++++
T Consensus 603 ~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~--~~~~d~ii~l~~G~i~~~g~~~~l~ 679 (694)
T TIGR01846 603 AIARALVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLST--VRACDRIIVLEKGQIAESGRHEELL 679 (694)
T ss_pred HHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChHH--HHhCCEEEEEeCCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999985 58999999999864 4679999999999999999999986
Q ss_pred H
Q 006571 385 A 385 (640)
Q Consensus 385 ~ 385 (640)
+
T Consensus 680 ~ 680 (694)
T TIGR01846 680 A 680 (694)
T ss_pred H
Confidence 4
No 68
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.1e-45 Score=366.84 Aligned_cols=216 Identities=30% Similarity=0.473 Sum_probs=183.6
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccC
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~ 229 (640)
|+++|++++|... ...+++|+|+||+|++|++++|+||||||||||+++|+|... +.+|+|.++|+++. ..++
T Consensus 1 l~~~~l~~~~~~~----~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~-~~~~ 73 (220)
T cd03293 1 LEVRNVSKTYGGG----GGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER--PTSGEVLVDGEPVT-GPGP 73 (220)
T ss_pred CeEEEEEEEcCCC----CcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECc-cccC
Confidence 4789999998210 011579999999999999999999999999999999999653 46899999999875 3467
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHH
Q 006571 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (640)
Q Consensus 230 ~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~a 309 (640)
.++||+|++.+++.+||+||+.++...+ ........+++.++++.++|.+..++. +..||||||||++||||
T Consensus 74 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrl~la~a 145 (220)
T cd03293 74 DRGYVFQQDALLPWLTVLDNVALGLELQ---GVPKAEARERAEELLELVGLSGFENAY-----PHQLSGGMRQRVALARA 145 (220)
T ss_pred cEEEEecccccccCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----cccCCHHHHHHHHHHHH
Confidence 8999999999999899999999875432 123344456788999999998766653 46899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCcHHHhccCEEEEEc--CCeEEEecChH
Q 006571 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLG--KGSLLYFGKAS 381 (640)
Q Consensus 310 L~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~tH~~~~~i~~~~D~i~vL~--~G~iv~~G~~~ 381 (640)
|+.+|++|||||||+|||+.++..+.+.|+++.+ .|+|||++||++. ++.+.||++++|+ +|++++.++.+
T Consensus 146 l~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 146 LAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred HHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCCCEEEEEEEec
Confidence 9999999999999999999999999999999865 4899999999975 4678899999999 79999988753
No 69
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=1e-45 Score=349.73 Aligned_cols=214 Identities=25% Similarity=0.454 Sum_probs=186.9
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--hc
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SL 227 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--~~ 227 (640)
|.+++|.|+|.. .==..+++|++||++||+||||||||||||+|+|... |.+|+|++||++... ..
T Consensus 2 l~L~~V~~~y~~----------~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~--P~~G~i~i~g~d~t~~~P~ 69 (231)
T COG3840 2 LALDDVRFSYGH----------LPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFET--PASGEILINGVDHTASPPA 69 (231)
T ss_pred ccccceEEeeCc----------ceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccC--CCCceEEEcCeecCcCCcc
Confidence 567899999821 2245889999999999999999999999999999654 568999999999753 45
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHH
Q 006571 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (640)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (640)
.|-++++||+.+||.++||.+|+.++.. |.-.-.++.+++++.++..+||..+.+.. +.+|||||||||++|
T Consensus 70 ~RPVSmlFQEnNLFaHLtV~qNigLGl~---P~LkL~a~~r~~v~~aa~~vGl~~~~~RL-----P~~LSGGqRQRvALA 141 (231)
T COG3840 70 ERPVSMLFQENNLFAHLTVAQNIGLGLS---PGLKLNAEQREKVEAAAAQVGLAGFLKRL-----PGELSGGQRQRVALA 141 (231)
T ss_pred cCChhhhhhccccchhhhhhhhhcccCC---cccccCHHHHHHHHHHHHHhChhhHhhhC-----ccccCchHHHHHHHH
Confidence 7889999999999999999999998853 22222456677899999999999887754 568999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHH
Q 006571 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (640)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (640)
|+|+++-+||+||||+|+|||.-+.+++.++.++++ ++.|++++||+|++ +.+++|+++++++|||.+.|+.++..
T Consensus 142 RclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~D-a~~ia~~~~fl~~Gri~~~g~~~~~~ 218 (231)
T COG3840 142 RCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPED-AARIADRVVFLDNGRIAAQGSTQELL 218 (231)
T ss_pred HHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHH-HHHhhhceEEEeCCEEEeeccHHHHh
Confidence 999999999999999999999999999999999985 48899999999875 78999999999999999999988865
No 70
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=4.9e-45 Score=366.64 Aligned_cols=216 Identities=29% Similarity=0.496 Sum_probs=185.8
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---h
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---S 226 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---~ 226 (640)
|+++||+++|. ...+++|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. .
T Consensus 1 l~~~~l~~~~~------~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~ 72 (220)
T cd03263 1 LQIRNLTKTYK------KGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR--PTSGTAYINGYSIRTDRKA 72 (220)
T ss_pred CEEEeeEEEeC------CCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecccchHH
Confidence 47899999982 112679999999999999999999999999999999999643 468999999998742 3
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHH
Q 006571 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (640)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (640)
+++.++||+|++.+++.+||+||+.+..... .....+..++++++++.++|.+..++. +..||||||||++|
T Consensus 73 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~l 144 (220)
T cd03263 73 ARQSLGYCPQFDALFDELTVREHLRFYARLK---GLPKSEIKEEVELLLRVLGLTDKANKR-----ARTLSGGMKRKLSL 144 (220)
T ss_pred HhhhEEEecCcCCccccCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhCh-----hhhCCHHHHHHHHH
Confidence 5677999999999998999999999875432 123344456788999999998766654 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHH
Q 006571 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (640)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (640)
||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+.||++++|++|++++.|+++++
T Consensus 145 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 145 AIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMD-EAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHH-HHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999999999999999876 699999999976 46678999999999999999998764
No 71
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=3.5e-45 Score=369.61 Aligned_cols=217 Identities=26% Similarity=0.441 Sum_probs=183.3
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC---CCcccEEEECCEeCCh-
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME---PTVGGSITYNDHPYSK- 225 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~---~~~~G~I~~~G~~~~~- 225 (640)
|+++||+++| +++++|+|+||+|++||+++|+||||||||||+++|+|.... ++.+|+|.++|+++..
T Consensus 1 i~~~~l~~~~--------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~ 72 (227)
T cd03260 1 IELRDLNVYY--------GDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDL 72 (227)
T ss_pred CEEEEEEEEc--------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhc
Confidence 4789999998 345799999999999999999999999999999999996511 3568999999998642
Q ss_pred -----hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHH
Q 006571 226 -----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (640)
Q Consensus 226 -----~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 300 (640)
..++.++|++|++.++ .+||+||+.++...+. .....+.++++.++++.+||.+..+..+. +.+|||||
T Consensus 73 ~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~~~LSgG~ 146 (227)
T cd03260 73 DVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHG--IKLKEELDERVEEALRKAALWDEVKDRLH---ALGLSGGQ 146 (227)
T ss_pred chHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCChHHhccCC---cccCCHHH
Confidence 2467899999999888 7899999998754321 11222345678889999999876554320 36899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecCh
Q 006571 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (640)
Q Consensus 301 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (640)
|||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ +|||++||++. .+.++||++++|++|++++.|++
T Consensus 147 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~ 224 (227)
T cd03260 147 QQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQ-QAARVADRTAFLLNGRLVEFGPT 224 (227)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHH-HHHHhCCEEEEEeCCEEEEecCc
Confidence 99999999999999999999999999999999999999999876 99999999975 46788999999999999999987
Q ss_pred HH
Q 006571 381 SE 382 (640)
Q Consensus 381 ~~ 382 (640)
++
T Consensus 225 ~~ 226 (227)
T cd03260 225 EQ 226 (227)
T ss_pred cc
Confidence 65
No 72
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-44 Score=378.20 Aligned_cols=232 Identities=27% Similarity=0.465 Sum_probs=191.9
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++||+++|..+ ....+++|+||||+|++||++||+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 2 ~l~~~~l~~~y~~~---~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~ 76 (287)
T PRK13637 2 SIKIENLTHIYMEG---TPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK--PTSGKIIIDGVDITDKKV 76 (287)
T ss_pred EEEEEEEEEECCCC---CccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCccEEEECCEECCCcCc
Confidence 38999999998311 0112579999999999999999999999999999999999653 568999999998742
Q ss_pred ---hccCcEEEEccCC--CCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCC--ccccccccCccCCcCCH
Q 006571 226 ---SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE--RCQDTMIGGSFVRGVSG 298 (640)
Q Consensus 226 ---~~~~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~t~vg~~~~~~LSG 298 (640)
..+++||||+|++ .++ ..||+||+.|+.... ..+.++..+++.++++.+||. +..++ .++.|||
T Consensus 77 ~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~~~LSg 147 (287)
T PRK13637 77 KLSDIRKKVGLVFQYPEYQLF-EETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDK-----SPFELSG 147 (287)
T ss_pred cHHHHhhceEEEecCchhccc-cccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccC-----CcccCCH
Confidence 3467899999997 345 479999999875432 245566667889999999996 44443 4578999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEe
Q 006571 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (640)
Q Consensus 299 GqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (640)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.++||+|++|++|++++.
T Consensus 148 Gq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~drv~~l~~G~i~~~ 226 (287)
T PRK13637 148 GQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADRIIVMNKGKCELQ 226 (287)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999865 899999999965 46688999999999999999
Q ss_pred cChHHHHH---HHHhcCCCCC
Q 006571 378 GKASEAMA---YFSSIGCSPQ 395 (640)
Q Consensus 378 G~~~~~~~---~f~~~g~~~~ 395 (640)
|+++++.+ .+...|+.+|
T Consensus 227 g~~~~~~~~~~~~~~~~~~~~ 247 (287)
T PRK13637 227 GTPREVFKEVETLESIGLAVP 247 (287)
T ss_pred CCHHHHHhCHHHHHHcCCCCC
Confidence 99998753 2334455443
No 73
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.4e-45 Score=371.10 Aligned_cols=220 Identities=29% Similarity=0.481 Sum_probs=184.6
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (640)
|+++||+++|. +++++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 1 l~~~~l~~~~~-------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~ 71 (241)
T cd03256 1 IEVENLSKTYP-------NGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE--PTSGSVLIDGTDINKLKGK 71 (241)
T ss_pred CEEeeEEEecC-------CccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEeccccCHh
Confidence 46899999882 12579999999999999999999999999999999999653 468999999998742
Q ss_pred ---hccCcEEEEccCCCCCCCCCHHHHHHHHHhccC-----CCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCC
Q 006571 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRL-----PNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (640)
Q Consensus 226 ---~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~-----~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LS 297 (640)
..++.++|++|++.+++.+||+||+.++..... ..........+++.++++.++|.+..++ .+..||
T Consensus 72 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS 146 (241)
T cd03256 72 ALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQ-----RADQLS 146 (241)
T ss_pred HHHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCC-----CcccCC
Confidence 245679999999999998999999987642110 0011122345668889999999765554 357899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEE
Q 006571 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (640)
Q Consensus 298 GGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (640)
|||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+.++||++++|++|++++
T Consensus 147 ~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~G~i~~ 225 (241)
T cd03256 147 GGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADRIVGLKDGRIVF 225 (241)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEe
Confidence 99999999999999999999999999999999999999999999764 899999999976 4777999999999999999
Q ss_pred ecChHHHH
Q 006571 377 FGKASEAM 384 (640)
Q Consensus 377 ~G~~~~~~ 384 (640)
.|+++++.
T Consensus 226 ~~~~~~~~ 233 (241)
T cd03256 226 DGPPAELT 233 (241)
T ss_pred ecCHHHhh
Confidence 99988763
No 74
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=8.2e-45 Score=364.49 Aligned_cols=214 Identities=30% Similarity=0.518 Sum_probs=183.4
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---h
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---S 226 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---~ 226 (640)
|+++||+++|..+ .+.+++|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. .
T Consensus 2 l~~~~v~~~~~~~----~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~ 75 (218)
T cd03266 2 ITADALTKRFRDV----KKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLE--PDAGFATVDGFDVVKEPAE 75 (218)
T ss_pred eEEEEEEEecCCC----CccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEEcccCHHH
Confidence 7899999998311 011279999999999999999999999999999999999543 568999999998753 3
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHH
Q 006571 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (640)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (640)
+++.++|++|++.+++.+||+||+.+....+ .....+..+++.++++.+||.+..+.. +..||||||||++|
T Consensus 76 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~l 147 (218)
T cd03266 76 ARRRLGFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRR-----VGGFSTGMRQKVAI 147 (218)
T ss_pred HHhhEEEecCCcccCcCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhhh-----hhhcCHHHHHHHHH
Confidence 5678999999999999999999998865432 223445566788999999998766654 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEec
Q 006571 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (640)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (640)
||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++..+||++++|++|++++.|
T Consensus 148 aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 148 ARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ-EVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhcCEEEEEECCEEeecC
Confidence 99999999999999999999999999999999999877999999999975 577889999999999998764
No 75
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1.5e-46 Score=428.05 Aligned_cols=348 Identities=21% Similarity=0.266 Sum_probs=247.8
Q ss_pred hHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchhh
Q 006571 10 LARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGA 89 (640)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 89 (640)
..++.++..++..+...|.+.+.+++|+++.+....+++.+..........+.....+...........-..+.-+..|+
T Consensus 164 ~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~ 243 (569)
T PRK10789 164 RFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGS 243 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667777888899999999999999999988888887665443332221111111101111111122333455788
Q ss_pred hHhhhhhhhhhhhhccccCCC----Ccccc------------ccCCCCCCCCCccccccccCCCCCCCCCCCCCeeEEEE
Q 006571 90 ALSRASSASLGLSFSFTGFTM----PPDEI------------ADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFT 153 (640)
Q Consensus 90 ~~~~~~~~~~g~~~~~~~~~~----~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 153 (640)
.++..|..+.|.++++..+.. |...+ +..+.....+.+++.+. .....+.....|+++
T Consensus 244 ~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~------~~~~~~~~~~~I~~~ 317 (569)
T PRK10789 244 WMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKD------GSEPVPEGRGELDVN 317 (569)
T ss_pred HHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccC------CCCCCCCCCCcEEEE
Confidence 888888888888777664332 11111 11111111111110000 000011112359999
Q ss_pred eEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hccC
Q 006571 154 DVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKS 229 (640)
Q Consensus 154 ~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~ 229 (640)
|++|+|+ ..++++|+|+|++++||++++|+||||||||||+++|+|.. + +.+|+|.+||+++.+ .+++
T Consensus 318 ~v~~~y~------~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~-~-p~~G~i~~~g~~~~~~~~~~~~~ 389 (569)
T PRK10789 318 IRQFTYP------QTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHF-D-VSEGDIRFHDIPLTKLQLDSWRS 389 (569)
T ss_pred EEEEECC------CCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhccc-C-CCCCEEEECCEEHhhCCHHHHHh
Confidence 9999983 12457999999999999999999999999999999999854 3 468999999998753 5688
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHc-------CCCccccccccCccCCcCCHHHHH
Q 006571 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL-------GLERCQDTMIGGSFVRGVSGGERK 302 (640)
Q Consensus 230 ~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~l-------gL~~~~~t~vg~~~~~~LSGGqrq 302 (640)
.++||+|++.+|+. |++|||.++. + ..++++. .+.++.. .++++.||.+|+. ...|||||||
T Consensus 390 ~i~~v~q~~~lf~~-ti~~Ni~~~~----~-~~~~~~~----~~~~~~~~l~~~i~~lp~gl~t~~~~~-g~~LSgGq~q 458 (569)
T PRK10789 390 RLAVVSQTPFLFSD-TVANNIALGR----P-DATQQEI----EHVARLASVHDDILRLPQGYDTEVGER-GVMLSGGQKQ 458 (569)
T ss_pred heEEEccCCeeccc-cHHHHHhcCC----C-CCCHHHH----HHHHHHcCCHHHHHhCcCcccceecCC-CCcCCHHHHH
Confidence 89999999999975 9999998752 1 1233222 2222222 4567789988765 4679999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHH
Q 006571 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (640)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (640)
|++|||||+++|+||||||||++||+.++..+.+.|+++. +++|+|+++|+++. .+.||+|++|++|++++.|++++
T Consensus 459 Ri~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tii~itH~~~~--~~~~d~i~~l~~G~i~~~g~~~~ 535 (569)
T PRK10789 459 RISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHRLSA--LTEASEILVMQHGHIAQRGNHDQ 535 (569)
T ss_pred HHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchhH--HHcCCEEEEEeCCEEEEecCHHH
Confidence 9999999999999999999999999999999999999875 58999999999853 47799999999999999999999
Q ss_pred HHH
Q 006571 383 AMA 385 (640)
Q Consensus 383 ~~~ 385 (640)
+++
T Consensus 536 l~~ 538 (569)
T PRK10789 536 LAQ 538 (569)
T ss_pred HHH
Confidence 864
No 76
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=7.8e-45 Score=363.36 Aligned_cols=210 Identities=27% Similarity=0.505 Sum_probs=181.6
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--hc
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SL 227 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--~~ 227 (640)
|+++|++++| +++++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++.. ..
T Consensus 1 i~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~v~~~g~~~~~~~~~ 70 (213)
T cd03301 1 VELENVTKRF--------GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE--PTSGRIYIGGRDVTDLPPK 70 (213)
T ss_pred CEEEeeEEEE--------CCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCCcc
Confidence 4789999998 34579999999999999999999999999999999999653 468999999998743 23
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHH
Q 006571 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (640)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (640)
++.++|++|++.+++.+||+||+.++.... .....+.++++.++++.+||.+..+.. +..||||||||++||
T Consensus 71 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr~~la 142 (213)
T cd03301 71 DRDIAMVFQNYALYPHMTVYDNIAFGLKLR---KVPKDEIDERVREVAELLQIEHLLDRK-----PKQLSGGQRQRVALG 142 (213)
T ss_pred cceEEEEecChhhccCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHHhCC-----hhhCCHHHHHHHHHH
Confidence 467999999999998899999999875432 123444556788899999998766654 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEec
Q 006571 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (640)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (640)
|+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.++||+|++|++|++++.|
T Consensus 143 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 143 RAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV-EAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEECCEEEecC
Confidence 9999999999999999999999999999999999864 899999999975 467889999999999999876
No 77
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=1.2e-44 Score=381.33 Aligned_cols=217 Identities=25% Similarity=0.459 Sum_probs=191.8
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.++++|++++| +++.+|+|+||+|++||+++|+||||||||||+++|+|.+. +++|+|.++|.++..
T Consensus 2 ~l~~~~l~~~~--------~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~--~~~G~i~i~g~~~~~~~~ 71 (301)
T TIGR03522 2 SIRVSSLTKLY--------GTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP--PDSGSVQVCGEDVLQNPK 71 (301)
T ss_pred EEEEEEEEEEE--------CCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccChH
Confidence 38999999998 34679999999999999999999999999999999999653 568999999998753
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHH
Q 006571 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (640)
Q Consensus 226 ~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (640)
..++.+||++|++.+++.+||.||+.+.+.++ ..+.++..++++++++.+||.+..++. ++.||||||||++
T Consensus 72 ~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrv~ 143 (301)
T TIGR03522 72 EVQRNIGYLPEHNPLYLDMYVREYLQFIAGIY---GMKGQLLKQRVEEMIELVGLRPEQHKK-----IGQLSKGYRQRVG 143 (301)
T ss_pred HHHhceEEecCCCCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCc-----hhhCCHHHHHHHH
Confidence 35678999999999999999999999876543 223444556788999999998877764 4689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHH
Q 006571 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (640)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (640)
||+||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. ++.++||||++|++|++++.|+++++..
T Consensus 144 la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 144 LAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQ-EVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 99999999999999999999999999999999999865 799999999975 5788999999999999999999999865
No 78
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-44 Score=369.79 Aligned_cols=216 Identities=30% Similarity=0.547 Sum_probs=186.6
Q ss_pred EEEEeEEEEEeecccccccc-ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 150 LKFTDVTYKVILKGMTSSEE-KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~-~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
++++||+++| ++ +.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 1 l~~~~l~~~~--------~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~ 70 (242)
T cd03295 1 IEFENVTKRY--------GGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE--PTSGEIFIDGEDIREQDP 70 (242)
T ss_pred CEEEEEEEEe--------CCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCeEcCcCCh
Confidence 4689999998 23 579999999999999999999999999999999999653 568999999998742
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCc--cccccccCccCCcCCHHHHH
Q 006571 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER--CQDTMIGGSFVRGVSGGERK 302 (640)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~t~vg~~~~~~LSGGqrq 302 (640)
..++.++|++|++.+++.+||+||+.++.... ....++..+++.++++.++|.+ ..++ .+..|||||||
T Consensus 71 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~l~l~~~~~~~~-----~~~~LS~G~~q 142 (242)
T cd03295 71 VELRRKIGYVIQQIGLFPHMTVEENIALVPKLL---KWPKEKIRERADELLALVGLDPAEFADR-----YPHELSGGQQQ 142 (242)
T ss_pred HHhhcceEEEccCccccCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcHHHHhc-----ChhhCCHHHHH
Confidence 34668999999999999899999999875432 1234445567889999999975 4443 45789999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChH
Q 006571 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (640)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (640)
||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.++||+|++|++|++++.|+++
T Consensus 143 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~ 221 (242)
T cd03295 143 RVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIMKNGEIVQVGTPD 221 (242)
T ss_pred HHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEecCHH
Confidence 999999999999999999999999999999999999999864 899999999975 467889999999999999999988
Q ss_pred HHH
Q 006571 382 EAM 384 (640)
Q Consensus 382 ~~~ 384 (640)
++.
T Consensus 222 ~~~ 224 (242)
T cd03295 222 EIL 224 (242)
T ss_pred HHH
Confidence 764
No 79
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.3e-44 Score=368.63 Aligned_cols=217 Identities=29% Similarity=0.501 Sum_probs=187.6
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (640)
|+++|++++| +++++|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 2 l~~~~l~~~~--------~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~ 71 (240)
T PRK09493 2 IEFKNVSKHF--------GPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE--ITSGDLIVDGLKVNDPKVD 71 (240)
T ss_pred EEEEeEEEEE--------CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCChh
Confidence 7899999998 24579999999999999999999999999999999999643 568999999998742
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHH
Q 006571 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (640)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (640)
..++.++|++|++.+++.+||+||+.++..... .....+..+++.++++.+||++..+.. +..||||||||
T Consensus 72 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qr 144 (240)
T PRK09493 72 ERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVR--GASKEEAEKQARELLAKVGLAERAHHY-----PSELSGGQQQR 144 (240)
T ss_pred HHHHhhceEEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCChHHHhcC-----hhhcCHHHHHH
Confidence 346679999999999998999999988642111 123444556788999999997666643 46899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHH
Q 006571 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (640)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (640)
++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|++++.|+++++
T Consensus 145 v~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 223 (240)
T PRK09493 145 VAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG-FAEKVASRLIFIDKGRIAEDGDPQVL 223 (240)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeeCCHHHH
Confidence 99999999999999999999999999999999999999877999999999975 46788999999999999999998876
Q ss_pred H
Q 006571 384 M 384 (640)
Q Consensus 384 ~ 384 (640)
.
T Consensus 224 ~ 224 (240)
T PRK09493 224 I 224 (240)
T ss_pred h
Confidence 4
No 80
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=2.7e-46 Score=427.92 Aligned_cols=344 Identities=19% Similarity=0.249 Sum_probs=235.1
Q ss_pred hHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccce-eeeccccccceecchhchh
Q 006571 10 LARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTH-IRKSRSAQLKLELDEVSSG 88 (640)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g 88 (640)
..+..+++..+..+...+...+.+++|+++.+....+++.+...+......+.....+.. .........-+.+.-+..+
T Consensus 192 ~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (592)
T PRK10790 192 IVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLRPLLSLFSALILCGLLMLF 271 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445666777778888899999999999987777776655443332211000000000 0000001111111111122
Q ss_pred hhHhhhhhhhhhhhhccccCC----CCcccc------------ccCCCCCCCCCccccccccCCCCCCCCCCCCCeeEEE
Q 006571 89 AALSRASSASLGLSFSFTGFT----MPPDEI------------ADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKF 152 (640)
Q Consensus 89 ~~~~~~~~~~~g~~~~~~~~~----~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 152 (640)
+. ...|..+.|.+..+..+. .|...+ +..+..+..+.+.. +.. .. ..+.....+++
T Consensus 272 ~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~----~~~-~~--~~~~~~~~i~~ 343 (592)
T PRK10790 272 GF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQ----QYG-ND--DRPLQSGRIDI 343 (592)
T ss_pred HH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----cCC-CC--ccCCCCCeEEE
Confidence 22 345555666666554322 111111 11111111111100 000 00 01111235999
Q ss_pred EeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hcc
Q 006571 153 TDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLK 228 (640)
Q Consensus 153 ~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~~~ 228 (640)
+||+|+|+ .++++|+|+|++|++||.+||+|+||||||||+|+|+|. ++ +.+|+|.+||.++.+ .++
T Consensus 344 ~~v~f~y~-------~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl-~~-p~~G~I~idg~~i~~~~~~~l~ 414 (592)
T PRK10790 344 DNVSFAYR-------DDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGY-YP-LTEGEIRLDGRPLSSLSHSVLR 414 (592)
T ss_pred EEEEEEeC-------CCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcc-cC-CCCceEEECCEEhhhCCHHHHH
Confidence 99999983 235699999999999999999999999999999999985 43 458999999999853 578
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcC-------CCccccccccCccCCcCCHHHH
Q 006571 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-------LERCQDTMIGGSFVRGVSGGER 301 (640)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~t~vg~~~~~~LSGGqr 301 (640)
++|+||+|++.+|++ |++|||.++. ..+++ ++.++++..| |+++.||.+|.. ...||||||
T Consensus 415 ~~i~~v~Q~~~lF~~-Ti~~NI~~~~------~~~d~----~i~~a~~~~gl~~~i~~lp~Gldt~i~e~-g~~LSGGqr 482 (592)
T PRK10790 415 QGVAMVQQDPVVLAD-TFLANVTLGR------DISEE----QVWQALETVQLAELARSLPDGLYTPLGEQ-GNNLSVGQK 482 (592)
T ss_pred hheEEEccCCccccc-hHHHHHHhCC------CCCHH----HHHHHHHHcCcHHHHHhccccccccccCC-CCCCCHHHH
Confidence 999999999999986 9999999863 12222 2444444444 467789998764 457999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChH
Q 006571 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (640)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (640)
||++|||||+++|+||+||||||+||+.++..|.+.|+++.+ ++|+|++||+++ ....||+|++|++|++++.|+++
T Consensus 483 QRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~~--~l~~~D~ii~l~~G~i~~~G~~~ 559 (592)
T PRK10790 483 QLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRLS--TIVEADTILVLHRGQAVEQGTHQ 559 (592)
T ss_pred HHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecchH--HHHhCCEEEEEECCEEEEEcCHH
Confidence 999999999999999999999999999999999999999865 799999999985 45779999999999999999999
Q ss_pred HHHH
Q 006571 382 EAMA 385 (640)
Q Consensus 382 ~~~~ 385 (640)
++++
T Consensus 560 ~L~~ 563 (592)
T PRK10790 560 QLLA 563 (592)
T ss_pred HHHh
Confidence 9863
No 81
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=8.3e-45 Score=382.73 Aligned_cols=207 Identities=29% Similarity=0.456 Sum_probs=183.2
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---hccCcEEEEccCCCCCCCCC
Q 006571 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---SLKSKIGFVTQDDVLFPHLT 245 (640)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---~~~~~i~yV~Q~~~l~~~lT 245 (640)
++++|+|+||+|++||+++|+||||||||||+|+|+|.+. +++|+|.++|+++.. ..++.+||++|++.+++.+|
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 82 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR--PTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLT 82 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCc
Confidence 4579999999999999999999999999999999999653 568999999998743 34678999999999999999
Q ss_pred HHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 006571 246 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 325 (640)
Q Consensus 246 V~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsg 325 (640)
|+||+.+.+..+ ..+..+..++++++++.+||.+..++. ++.|||||||||+||+||+.+|++|||||||+|
T Consensus 83 v~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 154 (302)
T TIGR01188 83 GRENLEMMGRLY---GLPKDEAEERAEELLELFELGEAADRP-----VGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTG 154 (302)
T ss_pred HHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhCCc-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 999999876543 233445566788999999998777664 468999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHHH
Q 006571 326 LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAY 386 (640)
Q Consensus 326 LD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~~ 386 (640)
||+.++..+.+.|++++++|+|||++||++. ++.++||+|++|++|++++.|+++++..-
T Consensus 155 LD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 155 LDPRTRRAIWDYIRALKEEGVTILLTTHYME-EADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 9999999999999999877999999999975 57789999999999999999999988653
No 82
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=1.6e-44 Score=369.94 Aligned_cols=218 Identities=30% Similarity=0.510 Sum_probs=187.9
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
+|+++||+++| +++++|+|+||+|++|++++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 3 ~l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~ 72 (250)
T PRK11264 3 AIEVKNLVKKF--------HGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ--PEAGTIRVGDITIDTARS 72 (250)
T ss_pred cEEEeceEEEE--------CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEcccccc
Confidence 58999999998 24579999999999999999999999999999999999653 468999999988641
Q ss_pred ---------hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcC
Q 006571 226 ---------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296 (640)
Q Consensus 226 ---------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~L 296 (640)
..++.++||+|++.+++.+||+||+.++..... .....+..+++.++++.+||.+..++ .+..|
T Consensus 73 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~-----~~~~L 145 (250)
T PRK11264 73 LSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETS-----YPRRL 145 (250)
T ss_pred ccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhC-----ChhhC
Confidence 245679999999999988999999988543111 12334455678889999999876554 35789
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEE
Q 006571 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (640)
Q Consensus 297 SGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (640)
|||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||++++|++|++++
T Consensus 146 S~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~G~i~~ 224 (250)
T PRK11264 146 SGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS-FARDVADRAIFMDQGRIVE 224 (250)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999999877999999999975 4678899999999999999
Q ss_pred ecChHHHH
Q 006571 377 FGKASEAM 384 (640)
Q Consensus 377 ~G~~~~~~ 384 (640)
.|+++++.
T Consensus 225 ~~~~~~~~ 232 (250)
T PRK11264 225 QGPAKALF 232 (250)
T ss_pred eCCHHHHh
Confidence 99988764
No 83
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=7.6e-45 Score=365.53 Aligned_cols=214 Identities=28% Similarity=0.499 Sum_probs=182.5
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (640)
|+++||+++| +++++|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 1 l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~ 70 (222)
T cd03224 1 LEVENLNAGY--------GKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP--PRSGSIRFDGRDITGLPPH 70 (222)
T ss_pred CEEeeEEeec--------CCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcCCCCHH
Confidence 4789999988 34579999999999999999999999999999999999653 568999999998742
Q ss_pred h-ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHc-CCCccccccccCccCCcCCHHHHHH
Q 006571 226 S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL-GLERCQDTMIGGSFVRGVSGGERKR 303 (640)
Q Consensus 226 ~-~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~t~vg~~~~~~LSGGqrqR 303 (640)
. .++.++|++|++.+++.+|++||+.+...... ..+..+++.++++.+ ++.+..++ .++.||||||||
T Consensus 71 ~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~-----~~~~LS~G~~qr 140 (222)
T cd03224 71 ERARAGIGYVPEGRRIFPELTVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQ-----LAGTLSGGEQQM 140 (222)
T ss_pred HHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhC-----chhhCCHHHHHH
Confidence 1 25679999999999999999999998754321 122344566778777 46655554 346899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHH
Q 006571 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (640)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (640)
++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||++++|++|++++.|+++++
T Consensus 141 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (222)
T cd03224 141 LAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNAR-FALEIADRAYVLERGRVVLEGTAAEL 219 (222)
T ss_pred HHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhccEEEEeeCCeEEEeCCHHHH
Confidence 99999999999999999999999999999999999999877899999999975 46788999999999999999998876
Q ss_pred H
Q 006571 384 M 384 (640)
Q Consensus 384 ~ 384 (640)
.
T Consensus 220 ~ 220 (222)
T cd03224 220 L 220 (222)
T ss_pred h
Confidence 4
No 84
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=6.7e-45 Score=371.03 Aligned_cols=219 Identities=29% Similarity=0.464 Sum_probs=184.4
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (640)
|+++||+++|. .++++|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 2 l~~~~l~~~~~-------~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~ 72 (243)
T TIGR02315 2 LEVENLSKVYP-------NGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE--PSSGSILLEGTDITKLRGK 72 (243)
T ss_pred eEEEeeeeecC-------CCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCccEEEECCEEhhhCCHH
Confidence 78999999881 14579999999999999999999999999999999999653 568999999998642
Q ss_pred ---hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCC-----CCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCC
Q 006571 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP-----NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (640)
Q Consensus 226 ---~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~-----~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LS 297 (640)
.+++.++||+|++.+++.+||+||+.++...... ......+..+++.++++.+||.+..+. .+..||
T Consensus 73 ~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS 147 (243)
T TIGR02315 73 KLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQ-----RADQLS 147 (243)
T ss_pred HHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcC-----CcccCC
Confidence 2467899999999999999999999875321000 001123345678889999999766554 346899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEE
Q 006571 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (640)
Q Consensus 298 GGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (640)
||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+.++||++++|++|++++
T Consensus 148 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~ 226 (243)
T TIGR02315 148 GGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYADRIVGLKAGEIVF 226 (243)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEECCEEEe
Confidence 99999999999999999999999999999999999999999999764 899999999976 4668899999999999999
Q ss_pred ecChHHH
Q 006571 377 FGKASEA 383 (640)
Q Consensus 377 ~G~~~~~ 383 (640)
.|+++++
T Consensus 227 ~~~~~~~ 233 (243)
T TIGR02315 227 DGAPSEL 233 (243)
T ss_pred cCCHHHh
Confidence 9998775
No 85
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-44 Score=377.45 Aligned_cols=231 Identities=27% Similarity=0.457 Sum_probs=191.0
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (640)
|+++||+++|... ....+++|+||||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 3 l~~~~l~~~y~~~---~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~ 77 (290)
T PRK13634 3 ITFQKVEHRYQYK---TPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ--PTSGTVTIGERVITAGKKN 77 (290)
T ss_pred EEEEEEEEEECCC---CcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEECcccccc
Confidence 8999999999311 0012569999999999999999999999999999999999653 568999999998731
Q ss_pred ----hccCcEEEEccCC--CCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCccCCcCCH
Q 006571 226 ----SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSG 298 (640)
Q Consensus 226 ----~~~~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LSG 298 (640)
..++.||||+|++ .+++ .||.||+.|+.... ..+..+..++++++++.+||. +..++ .++.|||
T Consensus 78 ~~~~~~~~~ig~v~q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~~LSg 148 (290)
T PRK13634 78 KKLKPLRKKVGIVFQFPEHQLFE-ETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLAR-----SPFELSG 148 (290)
T ss_pred chHHHHHhhEEEEeeCchhhhhh-hhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhC-----CcccCCH
Confidence 3457899999986 4664 69999999875432 234555566789999999996 44454 4578999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEe
Q 006571 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (640)
Q Consensus 299 GqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (640)
||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++. .+.++||||++|++|++++.
T Consensus 149 Gq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv~~l~~G~i~~~ 227 (290)
T PRK13634 149 GQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVMHKGTVFLQ 227 (290)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999765 899999999975 57789999999999999999
Q ss_pred cChHHHHH---HHHhcCCCCC
Q 006571 378 GKASEAMA---YFSSIGCSPQ 395 (640)
Q Consensus 378 G~~~~~~~---~f~~~g~~~~ 395 (640)
|+++++.. .+...+..+|
T Consensus 228 g~~~~~~~~~~~~~~~~~~~~ 248 (290)
T PRK13634 228 GTPREIFADPDELEAIGLDLP 248 (290)
T ss_pred CCHHHHhcCHHHHHHCCCCCC
Confidence 99988742 2344455443
No 86
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=1.1e-44 Score=393.70 Aligned_cols=220 Identities=25% Similarity=0.451 Sum_probs=190.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++||+++| +++++|+|+||+|++||+++|+||||||||||||+|+|.+. +.+|+|.++|+++..
T Consensus 3 ~L~~~nls~~y--------~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~--p~sG~I~l~G~~i~~~~~ 72 (402)
T PRK09536 3 MIDVSDLSVEF--------GDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT--PTAGTVLVAGDDVEALSA 72 (402)
T ss_pred eEEEeeEEEEE--------CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEEcCcCCH
Confidence 58999999998 35679999999999999999999999999999999999653 568999999998752
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCC-CccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHH
Q 006571 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN-TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (640)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (640)
.+++++|||+|++.+++.+||+||+.++....... ........++++++++.+||.+..++. +++||||||||
T Consensus 73 ~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~-----~~~LSgGerQR 147 (402)
T PRK09536 73 RAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRP-----VTSLSGGERQR 147 (402)
T ss_pred HHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHH
Confidence 45678999999999988999999999864321100 001234456789999999998777654 47899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHH
Q 006571 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (640)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (640)
++|||||+++|++|||||||+|||+.++.++++.|++++++|+|||+++|++. ++.++|||+++|++|++++.|+++++
T Consensus 148 v~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~-~~~~~adrii~l~~G~iv~~G~~~ev 226 (402)
T PRK09536 148 VLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLD-LAARYCDELVLLADGRVRAAGPPADV 226 (402)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEecCHHHH
Confidence 99999999999999999999999999999999999999877899999999975 57789999999999999999999985
Q ss_pred H
Q 006571 384 M 384 (640)
Q Consensus 384 ~ 384 (640)
+
T Consensus 227 ~ 227 (402)
T PRK09536 227 L 227 (402)
T ss_pred h
Confidence 3
No 87
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-44 Score=380.52 Aligned_cols=233 Identities=27% Similarity=0.419 Sum_probs=192.2
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (640)
..|+++||+|.|..+ ....+++|+||||+|++||++||+||||||||||+++|+|.+. +.+|+|+++|.++..
T Consensus 20 ~~l~~~nl~~~y~~~---~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~--p~~G~I~i~g~~~~~~~ 94 (320)
T PRK13631 20 IILRVKNLYCVFDEK---QENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK--SKYGTIQVGDIYIGDKK 94 (320)
T ss_pred ceEEEEeEEEEeCCC---CcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCEEccccc
Confidence 369999999998321 0113469999999999999999999999999999999999653 468999999987632
Q ss_pred ------------------hccCcEEEEccCC--CCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCC-ccc
Q 006571 226 ------------------SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQ 284 (640)
Q Consensus 226 ------------------~~~~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~ 284 (640)
.+++.|+||+|++ .+|+ .||+||+.|+.... ..+.++..+++.++++.+||+ +..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~ 170 (320)
T PRK13631 95 NNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLDDSYL 170 (320)
T ss_pred ccccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCChhHh
Confidence 3467899999987 5776 49999999875322 234455566788999999996 344
Q ss_pred cccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccC
Q 006571 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFD 364 (640)
Q Consensus 285 ~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D 364 (640)
+. .+..|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++. .+.+.||
T Consensus 171 ~~-----~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~-~~~~~ad 244 (320)
T PRK13631 171 ER-----SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVLEVAD 244 (320)
T ss_pred cC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCC
Confidence 43 45789999999999999999999999999999999999999999999999877999999999975 4668899
Q ss_pred EEEEEcCCeEEEecChHHHHH---HHHhcCCCCC
Q 006571 365 KLILLGKGSLLYFGKASEAMA---YFSSIGCSPQ 395 (640)
Q Consensus 365 ~i~vL~~G~iv~~G~~~~~~~---~f~~~g~~~~ 395 (640)
+|++|++|++++.|+++++.. .+...|..+|
T Consensus 245 ri~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p 278 (320)
T PRK13631 245 EVIVMDKGKILKTGTPYEIFTDQHIINSTSIQVP 278 (320)
T ss_pred EEEEEECCEEEEeCCHHHHhcCHHHHHHcCCCCC
Confidence 999999999999999998742 2344555544
No 88
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=2.1e-44 Score=373.57 Aligned_cols=218 Identities=24% Similarity=0.446 Sum_probs=188.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++||+++| +++.+|+||||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 7 ~l~~~~l~~~~--------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~ 76 (269)
T PRK11831 7 LVDMRGVSFTR--------GNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA--PDHGEILFDGENIPAMSR 76 (269)
T ss_pred eEEEeCeEEEE--------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEccccCh
Confidence 69999999998 34579999999999999999999999999999999999653 468999999998742
Q ss_pred ----hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHH
Q 006571 226 ----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (640)
Q Consensus 226 ----~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 301 (640)
..++.++|++|++.+++.+||.||+.++..... ........+++.++++.+||.+..++. +..||||||
T Consensus 77 ~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~ 149 (269)
T PRK11831 77 SRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGAAKLM-----PSELSGGMA 149 (269)
T ss_pred hhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHH
Confidence 235679999999999999999999998643211 123444456678899999998766654 468999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecCh
Q 006571 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (640)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (640)
||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+.++||++++|++|++++.|++
T Consensus 150 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~v~~l~~G~i~~~g~~ 228 (269)
T PRK11831 150 RRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP-EVLSIADHAYIVADKKIVAHGSA 228 (269)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhhCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999765 899999999965 47788999999999999999998
Q ss_pred HHHH
Q 006571 381 SEAM 384 (640)
Q Consensus 381 ~~~~ 384 (640)
+++.
T Consensus 229 ~~~~ 232 (269)
T PRK11831 229 QALQ 232 (269)
T ss_pred HHHh
Confidence 8864
No 89
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-44 Score=373.26 Aligned_cols=217 Identities=26% Similarity=0.414 Sum_probs=185.8
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++||+++|+ ..+++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 4 ~l~~~~l~~~~~-------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~ 74 (274)
T PRK13647 4 IIEVEDLHFRYK-------DGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL--PQRGRVKVMGREVNAENE 74 (274)
T ss_pred eEEEEEEEEEeC-------CCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEECCCCCH
Confidence 589999999982 13469999999999999999999999999999999999653 468999999998742
Q ss_pred -hccCcEEEEccCCC-CCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHH
Q 006571 226 -SLKSKIGFVTQDDV-LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (640)
Q Consensus 226 -~~~~~i~yV~Q~~~-l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (640)
..++.++||+|++. .++..||.||+.|+.... .....+.++++.++++.+||.+..++. +..||||||||
T Consensus 75 ~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LSgG~~qr 146 (274)
T PRK13647 75 KWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKP-----PYHLSYGQKKR 146 (274)
T ss_pred HHHHhhEEEEecChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCC-----hhhCCHHHHHH
Confidence 34678999999973 334579999999875422 234445556788999999998766654 56899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHH
Q 006571 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (640)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (640)
|+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||+|++|++|++++.|+++++
T Consensus 147 v~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 147 VAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD-LAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHh
Confidence 99999999999999999999999999999999999999877999999999965 46688999999999999999998754
No 90
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=2.4e-46 Score=426.43 Aligned_cols=354 Identities=21% Similarity=0.286 Sum_probs=245.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchhhh
Q 006571 11 ARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGAA 90 (640)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 90 (640)
.+..++...+..+...+...+.+++|+++.+....+++.+..........+.....+...........-..+.-+..|+.
T Consensus 182 ~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 261 (571)
T TIGR02203 182 SKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLIASLALAVVLFIALF 261 (571)
T ss_pred HHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566777778899999999999999998888887766654433222111111111111111122223444567777
Q ss_pred HhhhhhhhhhhhhccccCCC----CccccccCCC------CCCCCCccccccccCCCCCCCCCCCCCeeEEEEeEEEEEe
Q 006571 91 LSRASSASLGLSFSFTGFTM----PPDEIADSKP------FSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVI 160 (640)
Q Consensus 91 ~~~~~~~~~g~~~~~~~~~~----~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vs~~~~ 160 (640)
++..|..+.|.++.+..+.. |...+..... ....++.+.+...+.........+.....|+++||+|+|+
T Consensus 262 ~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~ 341 (571)
T TIGR02203 262 QAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGTRAIERARGDVEFRNVTFRYP 341 (571)
T ss_pred HHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCeEEEEEEEEEcC
Confidence 78778777887766654221 2111110000 0000011111111000000000111123699999999983
Q ss_pred eccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC----hhccCcEEEEcc
Q 006571 161 LKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSLKSKIGFVTQ 236 (640)
Q Consensus 161 ~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~----~~~~~~i~yV~Q 236 (640)
..++++|+|+|++|++||.++|+|+||||||||+++|+|.. + +.+|+|.+||.++. +.++++++||+|
T Consensus 342 ------~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~-~-~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q 413 (571)
T TIGR02203 342 ------GRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFY-E-PDSGQILLDGHDLADYTLASLRRQVALVSQ 413 (571)
T ss_pred ------CCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhcc-C-CCCCeEEECCEeHHhcCHHHHHhhceEEcc
Confidence 12457999999999999999999999999999999999954 3 45899999999875 356888999999
Q ss_pred CCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcC-------CCccccccccCccCCcCCHHHHHHHHHHHH
Q 006571 237 DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-------LERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (640)
Q Consensus 237 ~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~t~vg~~~~~~LSGGqrqRv~IA~a 309 (640)
++.+|+. |++|||.++. ++..+++ ++.++++..| |+++.||.+|+. ...||||||||++||||
T Consensus 414 ~~~lf~~-Ti~~Ni~~~~----~~~~~~~----~i~~~l~~~~l~~~i~~lp~gldt~i~~~-g~~LSgGqrQRiaLARa 483 (571)
T TIGR02203 414 DVVLFND-TIANNIAYGR----TEQADRA----EIERALAAAYAQDFVDKLPLGLDTPIGEN-GVLLSGGQRQRLAIARA 483 (571)
T ss_pred Ccccccc-cHHHHHhcCC----CCCCCHH----HHHHHHHHcChHHHHHhCcCcccceecCC-CCcCCHHHHHHHHHHHH
Confidence 9999975 9999999763 1122332 2333444333 466789999865 46799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHH
Q 006571 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (640)
Q Consensus 310 L~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (640)
++++|+|++||||||+||+.++..+.+.|+++. +++|+|++||++. ..+.||+|++|++|+++..|+++++++
T Consensus 484 ll~~~~illLDEpts~LD~~~~~~i~~~L~~~~-~~~tiIiitH~~~--~~~~~D~ii~l~~g~i~~~g~~~~l~~ 556 (571)
T TIGR02203 484 LLKDAPILILDEATSALDNESERLVQAALERLM-QGRTTLVIAHRLS--TIEKADRIVVMDDGRIVERGTHNELLA 556 (571)
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh-CCCEEEEEehhhH--HHHhCCEEEEEeCCEEEeeCCHHHHHH
Confidence 999999999999999999999999999999885 4799999999975 468899999999999999999999863
No 91
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=1.3e-44 Score=362.97 Aligned_cols=209 Identities=32% Similarity=0.539 Sum_probs=176.6
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (640)
|+++||+++|... ...+++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~~----~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~~~~~ 74 (218)
T cd03255 1 IELKNLSKTYGGG----GEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR--PTSGEVRVDGTDISKLSEK 74 (218)
T ss_pred CeEeeeEEEecCC----CcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC--CCceeEEECCEehhhcchh
Confidence 4789999998210 011579999999999999999999999999999999999653 568999999998742
Q ss_pred ---h-ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHH
Q 006571 226 ---S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (640)
Q Consensus 226 ---~-~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 301 (640)
. .++.++|++|++.+++.+||+||+.++...+ ........+++.++++.+||.+..++. ++.||||||
T Consensus 75 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~ 146 (218)
T cd03255 75 ELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLA---GVPKKERRERAEELLERVGLGDRLNHY-----PSELSGGQQ 146 (218)
T ss_pred HHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhcC-----hhhcCHHHH
Confidence 1 2467999999999999999999999876432 122334456788999999998766543 468999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCcHHHhccCEEEEEcCCeE
Q 006571 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (640)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~i 374 (640)
||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++.. +. .||++++|++|++
T Consensus 147 qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-~~-~~d~v~~l~~G~i 218 (218)
T cd03255 147 QRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPEL-AE-YADRIIELRDGKI 218 (218)
T ss_pred HHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHH-Hh-hhcEEEEeeCCcC
Confidence 999999999999999999999999999999999999999987 58999999999764 54 8999999999974
No 92
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=1.7e-44 Score=359.85 Aligned_cols=206 Identities=32% Similarity=0.540 Sum_probs=179.2
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--hc
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SL 227 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--~~ 227 (640)
|+++||+++| +++++|+|+||++++|++++|+||||||||||+++|+|... +.+|+|.++|+++.. ..
T Consensus 1 l~~~~l~~~~--------~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~ 70 (208)
T cd03268 1 LKTNDLTKTY--------GKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK--PDSGEITFDGKSYQKNIEA 70 (208)
T ss_pred CEEEEEEEEE--------CCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCCcccchHHH
Confidence 4789999998 24579999999999999999999999999999999999653 568999999998742 34
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHH
Q 006571 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (640)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (640)
++.++||+|++.+++.+||+||+.+....+ .. .+++++++++.++|.+..++. +..|||||||||+||
T Consensus 71 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~----~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la 138 (208)
T cd03268 71 LRRIGALIEAPGFYPNLTARENLRLLARLL---GI----RKKRIDEVLDVVGLKDSAKKK-----VKGFSLGMKQRLGIA 138 (208)
T ss_pred HhhEEEecCCCccCccCcHHHHHHHHHHhc---CC----cHHHHHHHHHHcCCHHHHhhh-----HhhCCHHHHHHHHHH
Confidence 667999999999999999999999875432 11 234578889999998766653 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEec
Q 006571 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (640)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (640)
|+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.||++++|++|++++.|
T Consensus 139 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 139 LALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLS-EIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred HHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999999877899999999975 466789999999999998765
No 93
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.5e-44 Score=372.39 Aligned_cols=228 Identities=24% Similarity=0.439 Sum_probs=192.1
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++||+++|.. ...+.+|+|+||+|++||++||+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 4 ~l~~~~l~~~~~~-----~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~ 76 (279)
T PRK13650 4 IIEVKNLTFKYKE-----DQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE--AESGQIIIDGDLLTEENV 76 (279)
T ss_pred eEEEEeEEEEcCC-----CCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEECCcCcH
Confidence 5899999999831 112469999999999999999999999999999999999653 468999999998742
Q ss_pred -hccCcEEEEccCCC-CCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHH
Q 006571 226 -SLKSKIGFVTQDDV-LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (640)
Q Consensus 226 -~~~~~i~yV~Q~~~-l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (640)
..++.++||+|++. +++.+||+|||.|+.... ..+.++..+++.++++.+||.+..+.. +..||||||||
T Consensus 77 ~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LSgGq~qr 148 (279)
T PRK13650 77 WDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKERE-----PARLSGGQKQR 148 (279)
T ss_pred HHHHhhceEEEcChHHhcccccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCC-----cccCCHHHHHH
Confidence 35678999999973 666789999999875432 244555667789999999998766653 56899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHH
Q 006571 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (640)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (640)
++|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||++.. + ..||+|++|++|+++..|++++
T Consensus 149 v~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~-~-~~~dri~~l~~G~i~~~g~~~~ 226 (279)
T PRK13650 149 VAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDE-V-ALSDRVLVMKNGQVESTSTPRE 226 (279)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999999875 9999999999754 5 5799999999999999999988
Q ss_pred HHH---HHHhcCCC
Q 006571 383 AMA---YFSSIGCS 393 (640)
Q Consensus 383 ~~~---~f~~~g~~ 393 (640)
+.. .+...|+.
T Consensus 227 ~~~~~~~~~~~~~~ 240 (279)
T PRK13650 227 LFSRGNDLLQLGLD 240 (279)
T ss_pred HHcChHHHHHcCCC
Confidence 753 23344554
No 94
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=4.7e-44 Score=366.13 Aligned_cols=216 Identities=25% Similarity=0.454 Sum_probs=185.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCc-----ccEEEECCEeC
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTV-----GGSITYNDHPY 223 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~-----~G~I~~~G~~~ 223 (640)
+|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|... +. +|+|.++|+++
T Consensus 1 ~l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~~~~~~G~i~~~g~~~ 70 (247)
T TIGR00972 1 AIEIENLNLFY--------GEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMND--LVPGVRIEGKVLFDGQDI 70 (247)
T ss_pred CEEEEEEEEEE--------CCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC--CCcCCCCceEEEECCEEc
Confidence 37899999998 23569999999999999999999999999999999999653 33 89999999987
Q ss_pred Ch------hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCC----ccccccccCccC
Q 006571 224 SK------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE----RCQDTMIGGSFV 293 (640)
Q Consensus 224 ~~------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~t~vg~~~~ 293 (640)
.. ..++.++|++|++.+++ +|++||+.+....+. ..+..+..+++.++++.+||. +..++ .+
T Consensus 71 ~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~ 142 (247)
T TIGR00972 71 YDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDRLHD-----SA 142 (247)
T ss_pred cccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhC-----Cc
Confidence 42 24678999999999998 899999998754321 123344556788999999997 44443 45
Q ss_pred CcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCe
Q 006571 294 RGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (640)
Q Consensus 294 ~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~ 373 (640)
..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. ++.++||++++|++|+
T Consensus 143 ~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~G~ 220 (247)
T TIGR00972 143 LGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQ-QAARISDRTAFFYDGE 220 (247)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHH-HHHHhCCEEEEEECCE
Confidence 78999999999999999999999999999999999999999999999977 489999999975 4678899999999999
Q ss_pred EEEecChHHHH
Q 006571 374 LLYFGKASEAM 384 (640)
Q Consensus 374 iv~~G~~~~~~ 384 (640)
+++.|+++++.
T Consensus 221 i~~~~~~~~~~ 231 (247)
T TIGR00972 221 LVEYGPTEQIF 231 (247)
T ss_pred EEEeCCHHHHH
Confidence 99999988864
No 95
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=7e-44 Score=362.43 Aligned_cols=216 Identities=31% Similarity=0.547 Sum_probs=185.8
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---h
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---S 226 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---~ 226 (640)
|+++|++++| +++.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. .
T Consensus 2 l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~i~~~~~~ 71 (236)
T TIGR03864 2 LEVAGLSFAY--------GARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYV--AQEGQISVAGHDLRRAPRA 71 (236)
T ss_pred EEEEeeEEEE--------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcccCChh
Confidence 7899999998 34579999999999999999999999999999999999653 568999999998742 2
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHH
Q 006571 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (640)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (640)
.++.++|++|++.+++.+|++||+.+....+ .....+..+.+.++++.+||.+..++. +..||||||||++|
T Consensus 72 ~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrl~l 143 (236)
T TIGR03864 72 ALARLGVVFQQPTLDLDLSVRQNLRYHAALH---GLSRAEARERIAALLARLGLAERADDK-----VRELNGGHRRRVEI 143 (236)
T ss_pred hhhhEEEeCCCCCCcccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCC-----hhhCCHHHHHHHHH
Confidence 3457999999999888899999998865432 123344556788999999998766654 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHH
Q 006571 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (640)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (640)
||||+.+|++|||||||+|||+.++..+.+.|+++++ +|+|||++||++.. +. .||++++|++|++++.|+++++.+
T Consensus 144 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~~-~~d~i~~l~~G~i~~~~~~~~~~~ 221 (236)
T TIGR03864 144 ARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDE-IE-ADDRLVVLHRGRVLADGAAAELRG 221 (236)
T ss_pred HHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhh-Hh-hCCEEEEEeCCeEEEeCCHHHHHH
Confidence 9999999999999999999999999999999999985 58999999999764 44 599999999999999999887754
No 96
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=8.4e-46 Score=355.18 Aligned_cols=219 Identities=26% Similarity=0.496 Sum_probs=196.5
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|..+|+.++| ++++|+++||++|++||+++++|||||||||.+.++.|... +++|.|.+||.+++.
T Consensus 4 ~L~a~~l~K~y--------~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~--~d~G~i~ld~~diT~lPm 73 (243)
T COG1137 4 TLVAENLAKSY--------KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVR--PDSGKILLDDEDITKLPM 73 (243)
T ss_pred EEEehhhhHhh--------CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEe--cCCceEEECCcccccCCh
Confidence 58899999998 56789999999999999999999999999999999999654 569999999999864
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHH
Q 006571 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (640)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (640)
..|.-|||+||++.+|..|||+|||......+.. +....+++.+++++|++|+|.+.++.. ...||||||+|
T Consensus 74 ~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~-d~~~~~~~~~l~~LL~ef~i~hlr~~~-----a~sLSGGERRR 147 (243)
T COG1137 74 HKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREK-DLKKAERKEELDALLEEFHITHLRDSK-----AYSLSGGERRR 147 (243)
T ss_pred HHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHhchHHHhcCc-----ccccccchHHH
Confidence 2355699999999999999999999988776532 223456667789999999999998864 35799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHH
Q 006571 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (640)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (640)
+.|||||+.+|+.++||||++|.||.+..+|.++++.|++.|..|+++-|... +...+|||.+++++|+++..|+++++
T Consensus 148 ~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVR-EtL~i~dRaYIi~~G~vla~G~p~ei 226 (243)
T COG1137 148 VEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR-ETLDICDRAYIISDGKVLAEGSPEEI 226 (243)
T ss_pred HHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHH-HHHhhhheEEEEecCeEEecCCHHHH
Confidence 99999999999999999999999999999999999999999999999999976 46799999999999999999999998
Q ss_pred H
Q 006571 384 M 384 (640)
Q Consensus 384 ~ 384 (640)
.
T Consensus 227 ~ 227 (243)
T COG1137 227 V 227 (243)
T ss_pred h
Confidence 6
No 97
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-44 Score=365.73 Aligned_cols=218 Identities=27% Similarity=0.526 Sum_probs=188.1
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++||+++| +++++|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~--------~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~ 72 (241)
T PRK10895 3 TLTAKNLAKAY--------KGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP--RDAGNIIIDDEDISLLPL 72 (241)
T ss_pred eEEEeCcEEEe--------CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCCCCH
Confidence 58999999998 24579999999999999999999999999999999999653 568999999998742
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHH
Q 006571 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (640)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (640)
..++.++|++|++.+++.+||.||+.+...... ....++.+.+++++++.+||.+..+. .++.||||||||
T Consensus 73 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qr 145 (241)
T PRK10895 73 HARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD--DLSAEQREDRANELMEEFHIEHLRDS-----MGQSLSGGERRR 145 (241)
T ss_pred HHHHHhCeEEeccCCcccccCcHHHHHhhhhhccc--ccCHHHHHHHHHHHHHHcCCHHHhhc-----chhhCCHHHHHH
Confidence 235679999999999998999999987643221 12334455678899999999765554 357899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHH
Q 006571 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (640)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (640)
++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+.||++++|++|++++.|+++++
T Consensus 146 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 224 (241)
T PRK10895 146 VEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR-ETLAVCERAYIVSQGHLIAHGTPTEI 224 (241)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH-HHHHhcCEEEEEeCCeEEeeCCHHHH
Confidence 99999999999999999999999999999999999999877999999999975 57789999999999999999998876
Q ss_pred H
Q 006571 384 M 384 (640)
Q Consensus 384 ~ 384 (640)
.
T Consensus 225 ~ 225 (241)
T PRK10895 225 L 225 (241)
T ss_pred h
Confidence 4
No 98
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=6.7e-46 Score=424.40 Aligned_cols=355 Identities=22% Similarity=0.303 Sum_probs=242.6
Q ss_pred hHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchhh
Q 006571 10 LARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGA 89 (640)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 89 (640)
..+..+++..+.++...+.....+++|.++.+..+.+++.+..........+.....+.....+..+..-..+.-+..|+
T Consensus 183 ~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 262 (588)
T PRK13657 183 GQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNRAASTITMLAILVLGA 262 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445667788888899999999999999998877777766554443322111111111111111222222333445677
Q ss_pred hHhhhhhhhhhhhhccccCC----CCccccccCCC------CCCCCCccccccccC--CCCCCCCCCCCCeeEEEEeEEE
Q 006571 90 ALSRASSASLGLSFSFTGFT----MPPDEIADSKP------FSDDDIPEDIEAGTR--ERPKFQTEPTLPIYLKFTDVTY 157 (640)
Q Consensus 90 ~~~~~~~~~~g~~~~~~~~~----~~~~~~~~~~~------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~vs~ 157 (640)
.++..|..+.|.++.+..+. .|...+..... ....++.+-++..+. ..+.....+.....++++||+|
T Consensus 263 ~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf 342 (588)
T PRK13657 263 ALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPPGAIDLGRVKGAVEFDDVSF 342 (588)
T ss_pred HHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCCCcCCCCCeEEEEEEEE
Confidence 77777777777766554321 11111110000 000000000000000 0000000111123699999999
Q ss_pred EEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hccCcEEE
Q 006571 158 KVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGF 233 (640)
Q Consensus 158 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~i~y 233 (640)
+|+ +++++|+|+|++++|||+++|+|+||||||||+|+|+|.. + +.+|+|.+||.++.+ .+|++|+|
T Consensus 343 ~y~-------~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~-~-p~~G~I~i~g~~i~~~~~~~~r~~i~~ 413 (588)
T PRK13657 343 SYD-------NSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVF-D-PQSGRILIDGTDIRTVTRASLRRNIAV 413 (588)
T ss_pred EeC-------CCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCc-C-CCCCEEEECCEEhhhCCHHHHHhheEE
Confidence 983 2246999999999999999999999999999999999854 3 468999999998853 57889999
Q ss_pred EccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHH-----HHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHH
Q 006571 234 VTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKR-----AIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN 308 (640)
Q Consensus 234 V~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~ 308 (640)
|+|++.+|+. |++|||.++. + ..++++..+. +++.++ .+++..||.+|.. ...||||||||++|||
T Consensus 414 v~Q~~~lf~~-Ti~~Ni~~~~----~-~~~d~~i~~al~~~~l~~~i~--~lp~gldt~i~~~-g~~LSgGq~QRialAR 484 (588)
T PRK13657 414 VFQDAGLFNR-SIEDNIRVGR----P-DATDEEMRAAAERAQAHDFIE--RKPDGYDTVVGER-GRQLSGGERQRLAIAR 484 (588)
T ss_pred EecCcccccc-cHHHHHhcCC----C-CCCHHHHHHHHHHhCHHHHHH--hCcccccchhcCC-CCCCCHHHHHHHHHHH
Confidence 9999999975 9999999862 1 1233322221 222333 2467788988764 4679999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHH
Q 006571 309 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (640)
Q Consensus 309 aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (640)
||+++|+|++||||||+||+.++..+.+.|+++. +++|+|++||+++ ..+.||+|++|++|++++.|+++++++
T Consensus 485 all~~~~iliLDEpts~LD~~t~~~i~~~l~~~~-~~~tvIiitHr~~--~~~~~D~ii~l~~G~i~~~g~~~~l~~ 558 (588)
T PRK13657 485 ALLKDPPILILDEATSALDVETEAKVKAALDELM-KGRTTFIIAHRLS--TVRNADRILVFDNGRVVESGSFDELVA 558 (588)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-cCCEEEEEEecHH--HHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 9999999999999999999999999999999875 4799999999975 467899999999999999999999864
No 99
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=6.7e-44 Score=367.21 Aligned_cols=218 Identities=29% Similarity=0.489 Sum_probs=187.8
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++||++.| +++++|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 5 ~l~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~ 74 (257)
T PRK10619 5 KLNVIDLHKRY--------GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGSIVVNGQTINLVRD 74 (257)
T ss_pred cEEEeeeEEEE--------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcccccc
Confidence 58999999998 34579999999999999999999999999999999999653 468999999987631
Q ss_pred --------------hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccc-cccccC
Q 006571 226 --------------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ-DTMIGG 290 (640)
Q Consensus 226 --------------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-~t~vg~ 290 (640)
.+++.++||+|++.+++.+||+||+.++..... .....+.++++.++++.+||.+.. +.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~---- 148 (257)
T PRK10619 75 KDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKQEARERAVKYLAKVGIDERAQGK---- 148 (257)
T ss_pred cccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCChhhhhC----
Confidence 345789999999999999999999987542111 123445566788999999997643 33
Q ss_pred ccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEc
Q 006571 291 SFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (640)
Q Consensus 291 ~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~ 370 (640)
.+..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+..+||+|++|+
T Consensus 149 -~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~-~~~~~~d~i~~l~ 226 (257)
T PRK10619 149 -YPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHVIFLH 226 (257)
T ss_pred -CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEE
Confidence 35789999999999999999999999999999999999999999999999877999999999975 4667899999999
Q ss_pred CCeEEEecChHHHH
Q 006571 371 KGSLLYFGKASEAM 384 (640)
Q Consensus 371 ~G~iv~~G~~~~~~ 384 (640)
+|++++.|+++++.
T Consensus 227 ~G~i~~~~~~~~~~ 240 (257)
T PRK10619 227 QGKIEEEGAPEQLF 240 (257)
T ss_pred CCEEEEeCCHHHhh
Confidence 99999999988764
No 100
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=5.8e-44 Score=380.25 Aligned_cols=228 Identities=24% Similarity=0.425 Sum_probs=191.7
Q ss_pred eeEEEEeEEEEEeeccc-----cccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEe
Q 006571 148 IYLKFTDVTYKVILKGM-----TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP 222 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~-----~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~ 222 (640)
..|+++||+++|..... ...+...+|+||||+|++||+++|+|+||||||||+++|+|.+. +.+|+|.++|++
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~--p~~G~I~~~G~~ 84 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK--ATDGEVAWLGKD 84 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCcEEEECCEE
Confidence 36999999999843110 00123579999999999999999999999999999999999653 468999999998
Q ss_pred CCh-------hccCcEEEEccCC--CCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCcc
Q 006571 223 YSK-------SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSF 292 (640)
Q Consensus 223 ~~~-------~~~~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~ 292 (640)
+.. .++++|+||+|++ .++|.+||.|||.+......+ ..++++.++++.++++.++|. +..+ .+
T Consensus 85 i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~-~~~~~~~~~~~~~~l~~vgl~~~~~~-----~~ 158 (331)
T PRK15079 85 LLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHP-KLSRQEVKDRVKAMMLKVGLLPNLIN-----RY 158 (331)
T ss_pred CCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHcCCChHHhc-----CC
Confidence 742 2467899999998 689899999999987543211 235566677888999999994 3333 45
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcC
Q 006571 293 VRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGK 371 (640)
Q Consensus 293 ~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~ 371 (640)
+.+|||||||||+|||||+.+|++||+||||+|||+.++.++++.|+++.++ |.|+|++|||+. .+.++||+|++|++
T Consensus 159 p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~dri~vl~~ 237 (331)
T PRK15079 159 PHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHISDRVLVMYL 237 (331)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC
Confidence 6899999999999999999999999999999999999999999999999864 899999999975 46778999999999
Q ss_pred CeEEEecChHHHH
Q 006571 372 GSLLYFGKASEAM 384 (640)
Q Consensus 372 G~iv~~G~~~~~~ 384 (640)
|++++.|+++++.
T Consensus 238 G~ive~g~~~~i~ 250 (331)
T PRK15079 238 GHAVELGTYDEVY 250 (331)
T ss_pred CEEEEEcCHHHHH
Confidence 9999999998875
No 101
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=3.7e-44 Score=384.92 Aligned_cols=207 Identities=26% Similarity=0.460 Sum_probs=183.7
Q ss_pred ccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hc----cCcEEEEccCCC
Q 006571 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SL----KSKIGFVTQDDV 239 (640)
Q Consensus 168 ~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~~----~~~i~yV~Q~~~ 239 (640)
+.+.+|+|+||+|++||+++|+|||||||||||++|+|... +++|+|.++|+++.. .+ ++.++||+|++.
T Consensus 4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~--p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~ 81 (363)
T TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE--PTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFA 81 (363)
T ss_pred CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCC--CCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCc
Confidence 45679999999999999999999999999999999999653 568999999998753 23 678999999999
Q ss_pred CCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEE
Q 006571 240 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFL 319 (640)
Q Consensus 240 l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlL 319 (640)
+||++||+||+.|+.... ..++++..+++.++++.+||++..++ ++..|||||||||+|||||+.+|+||||
T Consensus 82 l~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~-----~p~~LSGGq~QRV~lARAL~~~p~iLLl 153 (363)
T TIGR01186 82 LFPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHR-----YPDELSGGMQQRVGLARALAAEPDILLM 153 (363)
T ss_pred CCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999986543 23456677789999999999876665 4578999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHH
Q 006571 320 DEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (640)
Q Consensus 320 DEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (640)
||||++||+.++..+.+.|+++.++ |+|||++||++. ++.++||+|++|++|+++..|+++++..
T Consensus 154 DEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~-ea~~~~drI~vl~~G~iv~~g~~~ei~~ 219 (363)
T TIGR01186 154 DEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD-EAIRIGDRIVIMKAGEIVQVGTPDEILR 219 (363)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEeeCCHHHHHh
Confidence 9999999999999999999999764 899999999975 4778999999999999999999998753
No 102
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=3.8e-44 Score=358.68 Aligned_cols=206 Identities=33% Similarity=0.516 Sum_probs=177.9
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (640)
|+++|++++|. +++.+|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 2 l~~~~l~~~~~-------~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~~~~~ 72 (214)
T TIGR02673 2 IEFHNVSKAYP-------GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT--PSRGQVRIAGEDVNRLRGR 72 (214)
T ss_pred EEEEeeeEEeC-------CCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcccCCHH
Confidence 78999999982 23579999999999999999999999999999999999653 468999999998742
Q ss_pred ---hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHH
Q 006571 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (640)
Q Consensus 226 ---~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (640)
.+++.++|++|++.+++.+||.||+.+....+ .......++++.++++.++|.+..++. +..|||||||
T Consensus 73 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~q 144 (214)
T TIGR02673 73 QLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVR---GKKEREIQRRVGAALRQVGLEHKADAF-----PEQLSGGEQQ 144 (214)
T ss_pred HHHHHHhheEEEecChhhccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHHH
Confidence 24578999999999999899999999875432 123344456788999999998665543 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCe
Q 006571 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (640)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~ 373 (640)
|++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++..+||++++|++|+
T Consensus 145 rl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 145 RVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS-LVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEecCCC
Confidence 999999999999999999999999999999999999999877999999999975 5777899999999985
No 103
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.8e-44 Score=375.09 Aligned_cols=221 Identities=25% Similarity=0.461 Sum_probs=186.8
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC----
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~---- 224 (640)
.|+++||+++|..+. .....+|+||||+|++||++||+||||||||||+++|+|.+. +.+|+|.++|++..
T Consensus 2 ~i~~~~l~~~y~~~~---~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~--p~~G~i~~~g~~~~~~~~ 76 (305)
T PRK13651 2 QIKVKNIVKIFNKKL---PTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLL--PDTGTIEWIFKDEKNKKK 76 (305)
T ss_pred EEEEEEEEEEECCCC---CccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEEeceecccccc
Confidence 389999999983211 112469999999999999999999999999999999999653 46899999987541
Q ss_pred ------------------------hhccCcEEEEccCC--CCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHc
Q 006571 225 ------------------------KSLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL 278 (640)
Q Consensus 225 ------------------------~~~~~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~l 278 (640)
...++.||||+|++ .++ ..||+|||.|+.... ..+.++..+++.++++.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~-~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~ 152 (305)
T PRK13651 77 TKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLF-EQTIEKDIIFGPVSM---GVSKEEAKKRAAKYIELV 152 (305)
T ss_pred cccccccccccccccccccccchHHHHHhceEEEeeCcccccc-cccHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHc
Confidence 13467899999985 455 469999999876432 245556677889999999
Q ss_pred CCC-ccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCc
Q 006571 279 GLE-RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSS 357 (640)
Q Consensus 279 gL~-~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~ 357 (640)
||. +..++ .+..|||||||||+||++|+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++.
T Consensus 153 gL~~~~~~~-----~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~- 226 (305)
T PRK13651 153 GLDESYLQR-----SPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLD- 226 (305)
T ss_pred CCChhhhhC-----ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHH-
Confidence 996 45554 45789999999999999999999999999999999999999999999999877999999999965
Q ss_pred HHHhccCEEEEEcCCeEEEecChHHHH
Q 006571 358 RLFHKFDKLILLGKGSLLYFGKASEAM 384 (640)
Q Consensus 358 ~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (640)
.+.++||||++|++|++++.|+++++.
T Consensus 227 ~~~~~adrv~vl~~G~i~~~g~~~~~~ 253 (305)
T PRK13651 227 NVLEWTKRTIFFKDGKIIKDGDTYDIL 253 (305)
T ss_pred HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 467899999999999999999998875
No 104
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.5e-44 Score=361.14 Aligned_cols=216 Identities=30% Similarity=0.503 Sum_probs=182.0
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++||+++|..+ ...+++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 5 ~l~~~~l~~~~~~~----~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i~~~~~ 78 (233)
T PRK11629 5 LLQCDNLCKRYQEG----SVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT--PTSGDVIFNGQPMSKLSS 78 (233)
T ss_pred eEEEEeEEEEcCCC----CcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCcCCH
Confidence 59999999998311 112579999999999999999999999999999999999653 568999999998742
Q ss_pred ----hc-cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHH
Q 006571 226 ----SL-KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (640)
Q Consensus 226 ----~~-~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 300 (640)
.. ++.++|++|++.+++.+||+||+.+..... .....+.++++.++++.+||.+..++. +..|||||
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgG~ 150 (233)
T PRK11629 79 AAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG---KKKPAEINSRALEMLAAVGLEHRANHR-----PSELSGGE 150 (233)
T ss_pred HHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHH
Confidence 12 257999999999999999999999865432 123344556788999999998766543 46899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecC
Q 006571 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (640)
Q Consensus 301 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (640)
|||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ +|+|||++||++.. + ..+|++++|++|++++.|+
T Consensus 151 ~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~-~-~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 151 RQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQL-A-KRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-H-HhhCEEEEEECCEEEEEec
Confidence 9999999999999999999999999999999999999999975 58999999999754 4 4468999999999998876
Q ss_pred h
Q 006571 380 A 380 (640)
Q Consensus 380 ~ 380 (640)
.
T Consensus 229 ~ 229 (233)
T PRK11629 229 L 229 (233)
T ss_pred c
Confidence 3
No 105
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.5e-44 Score=372.11 Aligned_cols=218 Identities=29% Similarity=0.523 Sum_probs=187.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC----
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~---- 224 (640)
.|+++||+++|. +++.+|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++.
T Consensus 5 ~l~~~~l~~~~~-------~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~--p~~G~i~i~g~~~~~~~~ 75 (283)
T PRK13636 5 ILKVEELNYNYS-------DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK--PSSGRILFDGKPIDYSRK 75 (283)
T ss_pred eEEEEeEEEEeC-------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCccEEEECCEECCCCcc
Confidence 699999999982 23569999999999999999999999999999999999653 56899999999873
Q ss_pred --hhccCcEEEEccCCC--CCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHH
Q 006571 225 --KSLKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (640)
Q Consensus 225 --~~~~~~i~yV~Q~~~--l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 300 (640)
..+++.+||++|++. ++ ..||+||+.++.... ..+..+..++++++++.+||.+..++ .++.|||||
T Consensus 76 ~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~-----~~~~LS~G~ 146 (283)
T PRK13636 76 GLMKLRESVGMVFQDPDNQLF-SASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDK-----PTHCLSFGQ 146 (283)
T ss_pred hHHHHHhhEEEEecCcchhhc-cccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhC-----CcccCCHHH
Confidence 135678999999973 44 479999999865432 23445556678899999999876665 457899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecC
Q 006571 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (640)
Q Consensus 301 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (640)
|||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+..+||++++|++|++++.|+
T Consensus 147 ~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~-~~~~~~dri~~l~~G~i~~~g~ 225 (283)
T PRK13636 147 KKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID-IVPLYCDNVFVMKEGRVILQGN 225 (283)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999875 899999999975 4667899999999999999999
Q ss_pred hHHHHH
Q 006571 380 ASEAMA 385 (640)
Q Consensus 380 ~~~~~~ 385 (640)
++++..
T Consensus 226 ~~~~~~ 231 (283)
T PRK13636 226 PKEVFA 231 (283)
T ss_pred HHHHhc
Confidence 988754
No 106
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=7.5e-44 Score=359.93 Aligned_cols=221 Identities=44% Similarity=0.741 Sum_probs=184.0
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-CCcccEEEECCEeCCh-h
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-PTVGGSITYNDHPYSK-S 226 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~-~~~~G~I~~~G~~~~~-~ 226 (640)
.++|+||+++|+.. +..+++|+|+||+|++||+++|+||||||||||+|+|+|.+.. .+.+|+|.++|+++.. .
T Consensus 3 ~~~~~~~~~~~~~~----~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~ 78 (226)
T cd03234 3 VLPWWDVGLKAKNW----NKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQ 78 (226)
T ss_pred cceeecceeeeecC----ccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHH
Confidence 47899999998421 1146899999999999999999999999999999999996531 1468999999998753 4
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHH-HHHHcCCCccccccccCccCCcCCHHHHHHHH
Q 006571 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAID-VINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (640)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~-~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (640)
.++.++|++|++.+++.+||+||+.++.....+..........++++ .++.+++.+..++ .++.||||||||++
T Consensus 79 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrl~ 153 (226)
T cd03234 79 FQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGN-----LVKGISGGERRRVS 153 (226)
T ss_pred hcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcc-----cccCcCHHHHHHHH
Confidence 56789999999999999999999998765432222222233334555 7888888765554 35789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEec
Q 006571 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (640)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (640)
|||+|+.+|++|||||||+|||+.++..+.+.|+++.++|+|+|+++|++..++.++||++++|++|++++.|
T Consensus 154 laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 154 IAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999999999999999999999999999998778999999999755688999999999999999875
No 107
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.7e-44 Score=363.83 Aligned_cols=215 Identities=24% Similarity=0.431 Sum_probs=183.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 5 ~l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~ 74 (237)
T PRK11614 5 MLSFDKVSAHY--------GKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPR--ATSGRIVFDGKDITDWQT 74 (237)
T ss_pred EEEEEeEEEee--------CCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEecCCCCH
Confidence 69999999998 34579999999999999999999999999999999999643 568999999998742
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHc-CCCccccccccCccCCcCCHHHHH
Q 006571 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL-GLERCQDTMIGGSFVRGVSGGERK 302 (640)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~t~vg~~~~~~LSGGqrq 302 (640)
..++.++|++|++.+|+.+||.||+.++.... ......+.+.++++.+ ++.+..++ .+..|||||||
T Consensus 75 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~-----~~~~LS~G~~q 144 (237)
T PRK11614 75 AKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQ-----RAGTMSGGEQQ 144 (237)
T ss_pred HHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhC-----chhhCCHHHHH
Confidence 24567999999999999899999998864221 1222334566777777 46554443 34689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHH
Q 006571 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (640)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (640)
|++|||+|+.+|+||||||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|++++.|++++
T Consensus 145 rl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 223 (237)
T PRK11614 145 MLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN-QALKLADRGYVLENGHVVLEDTGDA 223 (237)
T ss_pred HHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHhhCCEEEEEeCCEEEeeCCHHH
Confidence 999999999999999999999999999999999999999877999999999965 4778999999999999999999988
Q ss_pred HH
Q 006571 383 AM 384 (640)
Q Consensus 383 ~~ 384 (640)
+.
T Consensus 224 ~~ 225 (237)
T PRK11614 224 LL 225 (237)
T ss_pred Hh
Confidence 74
No 108
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-43 Score=364.23 Aligned_cols=224 Identities=24% Similarity=0.396 Sum_probs=186.9
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---CcccEEEECCEeCCh
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYSK 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~---~~~G~I~~~G~~~~~ 225 (640)
.|+++||+++| +++++|+|+||+|++||+++|+||||||||||+++|+|..... +.+|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~ 74 (250)
T PRK14247 3 KIEIRDLKVSF--------GQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFK 74 (250)
T ss_pred eEEEEeeEEEE--------CCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCc
Confidence 58999999998 2457999999999999999999999999999999999965421 368999999998742
Q ss_pred ----hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHH
Q 006571 226 ----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (640)
Q Consensus 226 ----~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 301 (640)
.+++.|+|++|++.+++.+||.||+.++...... .....+..+.+.++++.+||.+..+.. -+..+.+||||||
T Consensus 75 ~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LSgG~~ 152 (250)
T PRK14247 75 MDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRL-VKSKKELQERVRWALEKAQLWDEVKDR-LDAPAGKLSGGQQ 152 (250)
T ss_pred CCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHcCCCcchhhh-hcCCcccCCHHHH
Confidence 3567899999999888889999999987542210 112344456788999999986421111 1234578999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChH
Q 006571 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (640)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (640)
||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ |+|||+++|++. .+.+.||++++|++|++++.|+++
T Consensus 153 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~ 230 (250)
T PRK14247 153 QRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQ-QAARISDYVAFLYKGQIVEWGPTR 230 (250)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEECCeEEEECCHH
Confidence 999999999999999999999999999999999999999865 899999999976 466889999999999999999998
Q ss_pred HHH
Q 006571 382 EAM 384 (640)
Q Consensus 382 ~~~ 384 (640)
++.
T Consensus 231 ~~~ 233 (250)
T PRK14247 231 EVF 233 (250)
T ss_pred HHH
Confidence 874
No 109
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.6e-44 Score=358.27 Aligned_cols=208 Identities=30% Similarity=0.574 Sum_probs=179.6
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---h
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---S 226 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---~ 226 (640)
|+++||+++| +++++|+|+||++++| +++|+||||||||||+++|+|.+. +.+|+|.++|.++.. .
T Consensus 1 i~~~~~~~~~--------~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~ 69 (211)
T cd03264 1 LQLENLTKRY--------GKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTP--PSSGTIRIDGQDVLKQPQK 69 (211)
T ss_pred CEEEEEEEEE--------CCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCCccccchHH
Confidence 4789999998 2357999999999999 999999999999999999999653 468999999987642 3
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHH
Q 006571 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (640)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (640)
+++.++|++|++.+|+.+||+||+.+....+ .....+..+++.++++.+||.+..++. +..||||||||++|
T Consensus 70 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~l 141 (211)
T cd03264 70 LRRRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRAKKK-----IGSLSGGMRRRVGI 141 (211)
T ss_pred HHhheEEecCCCcccccCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHCCCHHHHhCc-----hhhCCHHHHHHHHH
Confidence 4678999999999999999999999865432 123334456788899999998766654 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEec
Q 006571 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (640)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (640)
||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.++||++++|++|++++.|
T Consensus 142 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 142 AQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVE-DVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999999976 589999999975 466789999999999998765
No 110
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.6e-44 Score=372.24 Aligned_cols=222 Identities=23% Similarity=0.430 Sum_probs=187.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++||+++|..+ ....+++|+||||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 2 ~l~~~~l~~~y~~~---~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~--p~~G~i~~~g~~i~~~~~ 76 (286)
T PRK13646 2 TIRFDNVSYTYQKG---TPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLK--PTTGTVTVDDITITHKTK 76 (286)
T ss_pred EEEEEEEEEEECCC---CccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEECccccc
Confidence 38999999998311 0012569999999999999999999999999999999999653 568999999998742
Q ss_pred -----hccCcEEEEccCC--CCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCccCCcCC
Q 006571 226 -----SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVS 297 (640)
Q Consensus 226 -----~~~~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LS 297 (640)
.+++.||||+|++ .+++ .||.||+.|+.... ..+..+..+++.++++.+||. +..++ .++.||
T Consensus 77 ~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~~LS 147 (286)
T PRK13646 77 DKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQ-----SPFQMS 147 (286)
T ss_pred cchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhC-----CcccCC
Confidence 3567899999986 5676 59999999875432 234555667789999999996 45554 357899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEE
Q 006571 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (640)
Q Consensus 298 GGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (640)
||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++. .+.++||+|++|++|++++
T Consensus 148 gGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dri~~l~~G~i~~ 226 (286)
T PRK13646 148 GGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMKEGSIVS 226 (286)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999975 4899999999975 4678899999999999999
Q ss_pred ecChHHHHH
Q 006571 377 FGKASEAMA 385 (640)
Q Consensus 377 ~G~~~~~~~ 385 (640)
.|+++++..
T Consensus 227 ~g~~~~~~~ 235 (286)
T PRK13646 227 QTSPKELFK 235 (286)
T ss_pred ECCHHHHHh
Confidence 999988753
No 111
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-46 Score=396.66 Aligned_cols=348 Identities=25% Similarity=0.326 Sum_probs=240.6
Q ss_pred HHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhc----hhhhHh
Q 006571 17 QLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVS----SGAALS 92 (640)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~ 92 (640)
+--|+-+.+-.|.-+-|||+-|+++.-|...|...+.+-...+.|....-+- .+-.|..+-..++. .++..+
T Consensus 393 ~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnf----LN~~Qn~Ii~lgll~gsll~aY~V 468 (790)
T KOG0056|consen 393 SWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNF----LNIVQNGIIGLGLLAGSLLCAYRV 468 (790)
T ss_pred hhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhhhhhHHhhhhheeeeee
Confidence 3345555666777788999999999888888876554322222210000000 11122222222222 233344
Q ss_pred hhhhhhhhhhhccccCC----CCcc----ccccCCCCCCCCCcc--cc-ccccC--CCCCCCCCCCCCeeEEEEeEEEEE
Q 006571 93 RASSASLGLSFSFTGFT----MPPD----EIADSKPFSDDDIPE--DI-EAGTR--ERPKFQTEPTLPIYLKFTDVTYKV 159 (640)
Q Consensus 93 ~~~~~~~g~~~~~~~~~----~~~~----~~~~~~~~~~~~~~~--~~-~~~~~--~~~~~~~~~~~~~~l~~~~vs~~~ 159 (640)
..+....|...-|..|- +|.. ....-. -..-|.++ |+ +..+. +.|.-.........++|+||+|.|
T Consensus 469 t~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ-~nfiDmEnmfdllkee~eVvd~P~a~pl~~~~G~i~fsnvtF~Y 547 (790)
T KOG0056|consen 469 TEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQ-KNFIDMENMFDLLKEEPEVVDLPGAPPLKVTQGKIEFSNVTFAY 547 (790)
T ss_pred eeccccccceehHHHHHHHHhCchHHHHHHHHHHH-HhhhhHHHHHHHhhcCchhhcCCCCCCccccCCeEEEEEeEEec
Confidence 45555666655554332 2211 000000 00011111 11 11111 111111111223479999999999
Q ss_pred eeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hccCcEEEEc
Q 006571 160 ILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVT 235 (640)
Q Consensus 160 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~i~yV~ 235 (640)
. ++|++|+||||++.||+.+||+||||+||||++++|- |+++. .+|.|.+||+|++. .+|+.||.||
T Consensus 548 ~-------p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLf-Rffdv-~sGsI~iDgqdIrnvt~~SLRs~IGVVP 618 (790)
T KOG0056|consen 548 D-------PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLF-RFFDV-NSGSITIDGQDIRNVTQSSLRSSIGVVP 618 (790)
T ss_pred C-------CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHH-HHhhc-cCceEEEcCchHHHHHHHHHHHhcCccc
Confidence 3 5789999999999999999999999999999999999 67654 58999999999863 6899999999
Q ss_pred cCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCC
Q 006571 236 QDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPS 315 (640)
Q Consensus 236 Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~ 315 (640)
||..||.+ |+..||+|+..-...+.+..+.+.+.+++- .++++++++|.||.+..+ |||||||||+|||+++++|.
T Consensus 619 QDtvLFNd-TI~yNIryak~~AsneevyaAAkAA~IHdr--Il~fPegY~t~VGERGLk-LSGGEKQRVAiARtiLK~P~ 694 (790)
T KOG0056|consen 619 QDTVLFND-TILYNIRYAKPSASNEEVYAAAKAAQIHDR--ILQFPEGYNTRVGERGLK-LSGGEKQRVAIARTILKAPS 694 (790)
T ss_pred Ccceeecc-eeeeheeecCCCCChHHHHHHHHHhhHHHH--HhcCchhhhhhhhhcccc-cCCcchhhHHHHHHHhcCCc
Confidence 99999975 999999997432221122222233333333 367899999999987765 99999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHH
Q 006571 316 LLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (640)
Q Consensus 316 iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (640)
|++|||.||+||..++..|...|.+++. ++|.|++.|++++ .-.+|.|+++++|+|++.|.|+|++.
T Consensus 695 iIlLDEATSALDT~tER~IQaaL~rlca-~RTtIVvAHRLST--ivnAD~ILvi~~G~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 695 IILLDEATSALDTNTERAIQAALARLCA-NRTTIVVAHRLST--IVNADLILVISNGRIVERGRHEELLK 761 (790)
T ss_pred EEEEcchhhhcCCccHHHHHHHHHHHhc-CCceEEEeeeehh--eecccEEEEEeCCeEeecCcHHHHHh
Confidence 9999999999999999999999999986 8999999999986 35699999999999999999999975
No 112
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.9e-44 Score=362.89 Aligned_cols=216 Identities=30% Similarity=0.491 Sum_probs=185.5
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC----
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~---- 224 (640)
.|+++||++.| +++.+|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 2 ~l~~~~l~~~~--------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~ 71 (242)
T PRK11124 2 SIQLNGINCFY--------GAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM--PRSGTLNIAGNHFDFSKT 71 (242)
T ss_pred EEEEEeeEEEE--------CCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEecccccc
Confidence 48899999998 24579999999999999999999999999999999999653 56899999999762
Q ss_pred ------hhccCcEEEEccCCCCCCCCCHHHHHHHHH-hccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCC
Q 006571 225 ------KSLKSKIGFVTQDDVLFPHLTVKETLTYAA-LLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (640)
Q Consensus 225 ------~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~-~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LS 297 (640)
...++.++|++|++.+++.+||.||+.+.. ... .....+..+++.++++.+||++..++. +..||
T Consensus 72 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS 143 (242)
T PRK11124 72 PSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYADRF-----PLHLS 143 (242)
T ss_pred cchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCC
Confidence 134678999999999999999999997532 211 123344456788999999998766653 46899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEe
Q 006571 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (640)
Q Consensus 298 GGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (640)
||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++.++|+|||+++|++. .+.++||++++|++|++++.
T Consensus 144 ~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~g~i~~~ 222 (242)
T PRK11124 144 GGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE-VARKTASRVVYMENGHIVEQ 222 (242)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999999877999999999975 46678999999999999999
Q ss_pred cChHHH
Q 006571 378 GKASEA 383 (640)
Q Consensus 378 G~~~~~ 383 (640)
|+++++
T Consensus 223 ~~~~~~ 228 (242)
T PRK11124 223 GDASCF 228 (242)
T ss_pred CCHHHh
Confidence 998764
No 113
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=5.1e-44 Score=357.56 Aligned_cols=207 Identities=34% Similarity=0.530 Sum_probs=177.8
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (640)
|+++|++++|. +.+++|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 1 l~~~~l~~~~~-------~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~~~~~ 71 (214)
T cd03292 1 IEFINVTKTYP-------NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL--PTSGTIRVNGQDVSDLRGR 71 (214)
T ss_pred CEEEEEEEEeC-------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcccCCHH
Confidence 46899999982 12579999999999999999999999999999999999643 568999999998742
Q ss_pred ---hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHH
Q 006571 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (640)
Q Consensus 226 ---~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (640)
..++.++||+|++.+++.+|++||+.+....+ ....++..+++.++++.+||++..++. +.+|||||||
T Consensus 72 ~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~q 143 (214)
T cd03292 72 AIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVT---GVPPREIRKRVPAALELVGLSHKHRAL-----PAELSGGEQQ 143 (214)
T ss_pred HHHHHHHheEEEecCchhccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCC-----hhhcCHHHHH
Confidence 24578999999999999999999999875432 123444556788999999998766653 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeE
Q 006571 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (640)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~i 374 (640)
|++|||||+.+|+++||||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||++++|++|++
T Consensus 144 rv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~-~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 144 RVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE-LVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999999999777999999999975 46678999999999974
No 114
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=6.4e-46 Score=419.43 Aligned_cols=324 Identities=22% Similarity=0.265 Sum_probs=221.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchhhh
Q 006571 11 ARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGAA 90 (640)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 90 (640)
.++.++..++..+...|...+.+|+|+++.+....+++.+......+...+.....+...........-..+.-++.|+.
T Consensus 182 ~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 261 (529)
T TIGR02868 182 EVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLGAAAQLLAAGLAVLGALWAGGP 261 (529)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34446667888889999999999999999999999888876665544433211111111011111111112233456777
Q ss_pred HhhhhhhhhhhhhccccCCC----Ccc------------ccccCCCCCCCCCccccccccCCCCCCCCCCCCCeeEEEEe
Q 006571 91 LSRASSASLGLSFSFTGFTM----PPD------------EIADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTD 154 (640)
Q Consensus 91 ~~~~~~~~~g~~~~~~~~~~----~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 154 (640)
++..|..+.|.+.++..+.. |.. ..+..+.....+.+++.+.... +.....+.....|+|+|
T Consensus 262 ~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~--~~~~~~~~~~~~I~~~~ 339 (529)
T TIGR02868 262 AVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGVV--PAAGALGLGKPTLELRD 339 (529)
T ss_pred HHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCC--CCCcccCCCCceEEEEE
Confidence 77777777776666554321 111 1111111111111111100000 00000111223699999
Q ss_pred EEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---hccCcE
Q 006571 155 VTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---SLKSKI 231 (640)
Q Consensus 155 vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---~~~~~i 231 (640)
|+|+|+ +++++|+|+|++|++||.+||+||||||||||+|+|+|. ++ +.+|+|.+||.++.+ ++|++|
T Consensus 340 vsf~Y~-------~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~-~~-p~~G~I~i~g~~i~~~~~~lr~~i 410 (529)
T TIGR02868 340 LSFGYP-------GSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGL-LD-PLQGEVTLDGVSVSSLQDELRRRI 410 (529)
T ss_pred EEEecC-------CCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcC-CC-CCCcEEEECCEEhhhHHHHHHhhe
Confidence 999983 234699999999999999999999999999999999984 44 468999999998763 567899
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHH-----HHHHHHHcCCCccccccccCccCCcCCHHHHHHHHH
Q 006571 232 GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKR-----AIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (640)
Q Consensus 232 ~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (640)
+||+|++.+|+. |++|||.++. + ..++++..+. +++.++ .|+++.||.+|+.. ..||||||||++|
T Consensus 411 ~~V~Q~~~lF~~-TI~eNI~~g~----~-~~~~e~i~~al~~a~l~~~i~--~lp~GldT~ige~G-~~LSGGQrQRiai 481 (529)
T TIGR02868 411 SVFAQDAHLFDT-TVRDNLRLGR----P-DATDEELWAALERVGLADWLR--SLPDGLDTVLGEGG-ARLSGGERQRLAL 481 (529)
T ss_pred EEEccCcccccc-cHHHHHhccC----C-CCCHHHHHHHHHHcCCHHHHH--hCcccccchhcccc-CcCCHHHHHHHHH
Confidence 999999999976 9999999863 1 2233322221 223333 35778899998754 5699999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCC
Q 006571 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 355 (640)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~ 355 (640)
||||+++|+||+||||||+||+.++..|.+.|+++. +++|+|+++|++
T Consensus 482 ARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~-~~~TvIiItHrl 529 (529)
T TIGR02868 482 ARALLADAPILLLDEPTEHLDAGTESELLEDLLAAL-SGKTVVVITHHL 529 (529)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEecCC
Confidence 999999999999999999999999999999999864 489999999984
No 115
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-43 Score=364.70 Aligned_cols=219 Identities=23% Similarity=0.368 Sum_probs=184.1
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---CcccEEEECCEeCC
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYS 224 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~---~~~G~I~~~G~~~~ 224 (640)
..|+++|++++| +++.+|+|+||+|++||+++|+||||||||||+++|+|.+... +.+|+|.++|+++.
T Consensus 6 ~~l~~~~l~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~ 77 (254)
T PRK14273 6 AIIETENLNLFY--------TDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIY 77 (254)
T ss_pred ceEEEeeeEEEe--------CCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecc
Confidence 369999999998 2456999999999999999999999999999999999965421 24899999999863
Q ss_pred ------hhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCC----ccccccccCccCC
Q 006571 225 ------KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE----RCQDTMIGGSFVR 294 (640)
Q Consensus 225 ------~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~t~vg~~~~~ 294 (640)
...++.++||+|++.+++ +||+||+.++..... .......++++.++++.+++. +..++ .++
T Consensus 78 ~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~-----~~~ 149 (254)
T PRK14273 78 SNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHG--TKDKKKLDEIVEQSLKKSALWNEVKDKLNT-----NAL 149 (254)
T ss_pred cccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCCchhhHHHHhC-----Ccc
Confidence 134678999999998885 899999998754321 112334456678888888873 23343 457
Q ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeE
Q 006571 295 GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (640)
Q Consensus 295 ~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~i 374 (640)
.||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.++||++++|++|++
T Consensus 150 ~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~sH~~~-~~~~~~d~i~~l~~G~i 227 (254)
T PRK14273 150 SLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE-SYTIIIVTHNMQ-QAGRISDRTAFFLNGCI 227 (254)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEECCEE
Confidence 8999999999999999999999999999999999999999999999964 789999999976 46788999999999999
Q ss_pred EEecChHHHH
Q 006571 375 LYFGKASEAM 384 (640)
Q Consensus 375 v~~G~~~~~~ 384 (640)
+..|+++++.
T Consensus 228 ~~~g~~~~~~ 237 (254)
T PRK14273 228 EEESSTDELF 237 (254)
T ss_pred EEeCCHHHHH
Confidence 9999998874
No 116
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=8.7e-44 Score=365.23 Aligned_cols=217 Identities=31% Similarity=0.494 Sum_probs=186.4
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (640)
|+++||+++| +++++|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 1 i~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~~~~~ 70 (252)
T TIGR03005 1 VRFSDVTKRF--------GILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEP--IDEGQIQVEGEQLYHMPGR 70 (252)
T ss_pred CEEEEEEEEe--------CCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccccc
Confidence 4789999998 24579999999999999999999999999999999999653 468999999987631
Q ss_pred -------------hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCcc
Q 006571 226 -------------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSF 292 (640)
Q Consensus 226 -------------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~ 292 (640)
.+++.++|++|++.+++.+||.||+.++.... .........+.+.++++.+|+.+..+. .
T Consensus 71 ~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~-----~ 143 (252)
T TIGR03005 71 NGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV--LGMARAEAEKRAMELLDMVGLADKADH-----M 143 (252)
T ss_pred cccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCChhHhhc-----C
Confidence 24678999999999999899999999864211 112344455678899999999776654 3
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcC
Q 006571 293 VRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGK 371 (640)
Q Consensus 293 ~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~ 371 (640)
+..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++..+||++++|++
T Consensus 144 ~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~ 222 (252)
T TIGR03005 144 PAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-FAREFADRVCFFDK 222 (252)
T ss_pred hhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEEEC
Confidence 5789999999999999999999999999999999999999999999999865 899999999975 46788999999999
Q ss_pred CeEEEecChHHHH
Q 006571 372 GSLLYFGKASEAM 384 (640)
Q Consensus 372 G~iv~~G~~~~~~ 384 (640)
|++++.|+++++.
T Consensus 223 G~i~~~g~~~~~~ 235 (252)
T TIGR03005 223 GRIVEQGKPDEIF 235 (252)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999988764
No 117
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=9.4e-44 Score=362.41 Aligned_cols=221 Identities=28% Similarity=0.356 Sum_probs=183.0
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (640)
|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+|+|+|....++.+|+|.++|+++..
T Consensus 1 l~~~~l~~~~--------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~ 72 (243)
T TIGR01978 1 LKIKDLHVSV--------EDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPD 72 (243)
T ss_pred CeEeeEEEEE--------CCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHH
Confidence 4789999998 3457999999999999999999999999999999999964113568999999998742
Q ss_pred h-ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCC---C-CccHHHHHHHHHHHHHHcCCCc-cccccccCccCC-cCCH
Q 006571 226 S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP---N-TLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVR-GVSG 298 (640)
Q Consensus 226 ~-~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~---~-~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~-~LSG 298 (640)
. .+..++||+|++.+++.+|++||+.+....... . .....+..+++.++++.+||++ ..++. +. .|||
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~~LS~ 147 (243)
T TIGR01978 73 ERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRS-----VNEGFSG 147 (243)
T ss_pred HhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccc-----cccCcCH
Confidence 2 234599999999999999999999876532110 0 1122334567889999999973 44433 34 5999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhc-cCEEEEEcCCeEEEe
Q 006571 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHK-FDKLILLGKGSLLYF 377 (640)
Q Consensus 299 GqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~-~D~i~vL~~G~iv~~ 377 (640)
|||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+... ||++++|++|++++.
T Consensus 148 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~-~~~~~~~d~i~~l~~G~i~~~ 226 (243)
T TIGR01978 148 GEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR-LLNYIKPDYVHVLLDGRIVKS 226 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHH-HHHhhcCCeEEEEeCCEEEEe
Confidence 9999999999999999999999999999999999999999999877899999999975 45566 899999999999999
Q ss_pred cChHHHH
Q 006571 378 GKASEAM 384 (640)
Q Consensus 378 G~~~~~~ 384 (640)
|+++++.
T Consensus 227 g~~~~~~ 233 (243)
T TIGR01978 227 GDVELAK 233 (243)
T ss_pred cCHHHhc
Confidence 9987543
No 118
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-43 Score=371.75 Aligned_cols=221 Identities=27% Similarity=0.434 Sum_probs=186.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++||+++|..+ ....+.+|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 2 ~i~~~~l~~~~~~~---~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~ 76 (287)
T PRK13641 2 SIKFENVDYIYSPG---TPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLK--PSSGTITIAGYHITPETG 76 (287)
T ss_pred EEEEEEEEEEcCCC---CCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEECccccc
Confidence 47899999998210 0012579999999999999999999999999999999999653 568999999998632
Q ss_pred -----hccCcEEEEccCC--CCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCccCCcCC
Q 006571 226 -----SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVS 297 (640)
Q Consensus 226 -----~~~~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LS 297 (640)
..++.++|++|++ .++ .+||.||+.++.... ....++..++++++++.+||. +..++ .++.||
T Consensus 77 ~~~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~~LS 147 (287)
T PRK13641 77 NKNLKKLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLISK-----SPFELS 147 (287)
T ss_pred cchHHHHHhceEEEEeChhhhhc-cchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhhC-----CcccCC
Confidence 2456799999997 455 579999999875432 234455566789999999996 45554 357899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEe
Q 006571 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (640)
Q Consensus 298 GGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (640)
||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.||++++|++|++++.
T Consensus 148 gGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~-~~~~~~d~v~~l~~G~i~~~ 226 (287)
T PRK13641 148 GGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVLEHGKLIKH 226 (287)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999999877999999999975 47789999999999999999
Q ss_pred cChHHHH
Q 006571 378 GKASEAM 384 (640)
Q Consensus 378 G~~~~~~ 384 (640)
|+++++.
T Consensus 227 g~~~~~~ 233 (287)
T PRK13641 227 ASPKEIF 233 (287)
T ss_pred CCHHHHh
Confidence 9998864
No 119
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-43 Score=365.28 Aligned_cols=222 Identities=23% Similarity=0.400 Sum_probs=185.0
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC---CCcccEEEECCEeCC
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME---PTVGGSITYNDHPYS 224 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~---~~~~G~I~~~G~~~~ 224 (640)
..|+++|++++| +++++|+|+||+|++||+++|+||||||||||+++|+|.... ++.+|+|.++|+++.
T Consensus 11 ~~l~~~~l~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~ 82 (258)
T PRK14268 11 PQIKVENLNLWY--------GEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIY 82 (258)
T ss_pred eeEEEeeeEEEe--------CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcc
Confidence 369999999998 345799999999999999999999999999999999996532 136899999999863
Q ss_pred h------hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCH
Q 006571 225 K------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (640)
Q Consensus 225 ~------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (640)
. ..++.++|++|++.+++ +|++||+.+..... ..+.....+++.++++.+++.+...... +..+..|||
T Consensus 83 ~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSg 157 (258)
T PRK14268 83 EPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDETSDRL-KSPALSLSG 157 (258)
T ss_pred cccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcchhhhh-cCChhhCCH
Confidence 2 24677999999999998 89999999875432 1233444556888999998842211111 234578999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEec
Q 006571 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (640)
Q Consensus 299 GqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (640)
||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. .+.++||+|++|++|++++.|
T Consensus 158 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~~ 235 (258)
T PRK14268 158 GQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQ-QAARISDYTGFFLMGELIEFG 235 (258)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999965 799999999975 466889999999999999999
Q ss_pred ChHHHH
Q 006571 379 KASEAM 384 (640)
Q Consensus 379 ~~~~~~ 384 (640)
+++++.
T Consensus 236 ~~~~~~ 241 (258)
T PRK14268 236 QTRQIF 241 (258)
T ss_pred CHHHHh
Confidence 998863
No 120
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-43 Score=363.89 Aligned_cols=224 Identities=23% Similarity=0.390 Sum_probs=185.5
Q ss_pred CeeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC-CC--CcccEEEECCEeC
Q 006571 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLM-EP--TVGGSITYNDHPY 223 (640)
Q Consensus 147 ~~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~-~~--~~~G~I~~~G~~~ 223 (640)
|+.|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|... .+ +.+|+|.++|+++
T Consensus 4 ~~~l~~~~l~~~~--------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i 75 (253)
T PRK14242 4 PPKMEARGLSFFY--------GDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENI 75 (253)
T ss_pred CcEEEEeeeEEEE--------CCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEc
Confidence 3469999999998 24569999999999999999999999999999999999642 12 3689999999987
Q ss_pred Ch------hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCC
Q 006571 224 SK------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (640)
Q Consensus 224 ~~------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LS 297 (640)
.. .+++.++|++|++.+|+ .||+||+.++...+. ....+...+++.++++.++|.+...... +..+..||
T Consensus 76 ~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS 151 (253)
T PRK14242 76 YDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNG--VKDKAYLAERVERSLRHAALWDEVKDRL-HESALGLS 151 (253)
T ss_pred cccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCchhhhHHh-hCCcccCC
Confidence 42 34678999999999998 599999998754321 1123344567888899999854221111 23457899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEe
Q 006571 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (640)
Q Consensus 298 GGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (640)
|||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+ ++|||++||++. .+.++||+|++|++|++++.
T Consensus 152 gGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~~-~~~~~~d~v~~l~~G~i~~~ 229 (253)
T PRK14242 152 GGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNMQ-QAARVSDVTAFFYMGKLIEV 229 (253)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecHH-HHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999964 799999999975 46788999999999999999
Q ss_pred cChHHHH
Q 006571 378 GKASEAM 384 (640)
Q Consensus 378 G~~~~~~ 384 (640)
|+++++.
T Consensus 230 g~~~~~~ 236 (253)
T PRK14242 230 GPTEQIF 236 (253)
T ss_pred CCHHHHH
Confidence 9988763
No 121
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-43 Score=367.05 Aligned_cols=217 Identities=22% Similarity=0.430 Sum_probs=184.8
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC----
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~---- 224 (640)
+|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++.
T Consensus 1 ml~~~~l~~~~--------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~ 70 (271)
T PRK13638 1 MLATSDLWFRY--------QDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR--PQKGAVLWQGKPLDYSKR 70 (271)
T ss_pred CeEEEEEEEEc--------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCccEEEECCEEcccccC
Confidence 37899999998 24579999999999999999999999999999999999653 56899999999873
Q ss_pred --hhccCcEEEEccCCCC-CCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHH
Q 006571 225 --KSLKSKIGFVTQDDVL-FPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (640)
Q Consensus 225 --~~~~~~i~yV~Q~~~l-~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 301 (640)
...++.++||+|++.+ +...|+.||+.+..... .....+..+++.++++.+||.+..++. +..||||||
T Consensus 71 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~ 142 (271)
T PRK13638 71 GLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQP-----IQCLSHGQK 142 (271)
T ss_pred CHHHHHhheEEEeeChhhccccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCC-----chhCCHHHH
Confidence 1345679999999752 33458999998865432 223444456688899999998766653 468999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChH
Q 006571 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (640)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (640)
||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++. .+.++||++++|++|++++.|+++
T Consensus 143 qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~ 221 (271)
T PRK13638 143 KRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID-LIYEISDAVYVLRQGQILTHGAPG 221 (271)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999999877899999999975 466889999999999999999998
Q ss_pred HHH
Q 006571 382 EAM 384 (640)
Q Consensus 382 ~~~ 384 (640)
++.
T Consensus 222 ~~~ 224 (271)
T PRK13638 222 EVF 224 (271)
T ss_pred HHh
Confidence 864
No 122
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-43 Score=363.06 Aligned_cols=224 Identities=24% Similarity=0.388 Sum_probs=185.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---CcccEEEECCEeCC-
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYS- 224 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~---~~~G~I~~~G~~~~- 224 (640)
.|+++||+++| +++++|+|+||+|++||+++|+||||||||||+++|+|.+.+. +.+|+|.++|+++.
T Consensus 4 ~l~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~ 75 (253)
T PRK14267 4 AIETVNLRVYY--------GSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYS 75 (253)
T ss_pred eEEEEeEEEEe--------CCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccc
Confidence 58999999998 2357999999999999999999999999999999999965321 25899999999874
Q ss_pred -----hhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHH
Q 006571 225 -----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (640)
Q Consensus 225 -----~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (640)
..+++.++|++|++.+++.+||.||+.++...+. .....++..+++.++++.++|.+..... -+..+..||||
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~G 153 (253)
T PRK14267 76 PDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNG-LVKSKKELDERVEWALKKAALWDEVKDR-LNDYPSNLSGG 153 (253)
T ss_pred cccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcC-ccCCHHHHHHHHHHHHHHcCCccchhhh-hccChhhCCHH
Confidence 1346789999999999999999999998754321 0012334455678889998885321111 12345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecC
Q 006571 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (640)
Q Consensus 300 qrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (640)
||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. .+.++||+|++|++|++++.|+
T Consensus 154 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~ 231 (253)
T PRK14267 154 QRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPA-QAARVSDYVAFLYLGKLIEVGP 231 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHhhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999975 689999999975 4678899999999999999999
Q ss_pred hHHHH
Q 006571 380 ASEAM 384 (640)
Q Consensus 380 ~~~~~ 384 (640)
++++.
T Consensus 232 ~~~~~ 236 (253)
T PRK14267 232 TRKVF 236 (253)
T ss_pred HHHHH
Confidence 98874
No 123
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.6e-44 Score=355.59 Aligned_cols=221 Identities=29% Similarity=0.543 Sum_probs=205.8
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhcc
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~ 228 (640)
.|++++|+++| +++.+++|+||.++||++++++|||||||||.+++|.|.+. +++|+|.++|.+++...+
T Consensus 2 ~L~ie~vtK~F--------g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle--~~~G~I~~~g~~~~~~~~ 71 (300)
T COG4152 2 ALEIEGVTKSF--------GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE--PTEGEITWNGGPLSQEIK 71 (300)
T ss_pred ceEEecchhcc--------CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCC--ccCceEEEcCcchhhhhh
Confidence 58999999988 68899999999999999999999999999999999999664 468999999999998889
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHH
Q 006571 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN 308 (640)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~ 308 (640)
.+|||.|.+..|+|.+||.|.|.|.+.++ .+++++..+++..+|+.+++....... +.+||.|++|++.+..
T Consensus 72 ~rIGyLPEERGLy~k~tv~dql~yla~Lk---Gm~~~e~~~~~~~wLer~~i~~~~~~k-----Ik~LSKGnqQKIQfis 143 (300)
T COG4152 72 NRIGYLPEERGLYPKMTVEDQLKYLAELK---GMPKAEIQKKLQAWLERLEIVGKKTKK-----IKELSKGNQQKIQFIS 143 (300)
T ss_pred hhcccChhhhccCccCcHHHHHHHHHHhc---CCcHHHHHHHHHHHHHhccccccccch-----HHHhhhhhhHHHHHHH
Confidence 99999999999999999999999999886 578889999999999999998766554 5799999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHHHHH
Q 006571 309 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFS 388 (640)
Q Consensus 309 aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~~f~ 388 (640)
+++++|+++|||||+|||||.+.+.+-+.+.+++++|.|||+++|++. .+.++||++++|++|+.|.+|+.+++.+-|.
T Consensus 144 aviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me-~vEeLCD~llmL~kG~~V~~G~v~~ir~~~G 222 (300)
T COG4152 144 AVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRME-HVEELCDRLLMLKKGQTVLYGTVEDIRRSFG 222 (300)
T ss_pred HHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHH-HHHHHhhhhheecCCceEEeccHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999965 6899999999999999999999999987553
No 124
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-43 Score=375.97 Aligned_cols=227 Identities=26% Similarity=0.389 Sum_probs=189.3
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CcccEEEECCEeCCh-
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP--TVGGSITYNDHPYSK- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~--~~~G~I~~~G~~~~~- 225 (640)
.|+++||++.|..+ .+...+|+||||+|++||+++|+|+||||||||+++|+|.+..+ +.+|+|.++|+++..
T Consensus 3 ~L~v~~l~~~~~~~----~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~ 78 (326)
T PRK11022 3 LLNVDKLSVHFGDE----SAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRI 78 (326)
T ss_pred eEEEeCeEEEECCC----CccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcC
Confidence 48999999998321 12256999999999999999999999999999999999966421 368999999998742
Q ss_pred ---h---c-cCcEEEEccCC--CCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcC
Q 006571 226 ---S---L-KSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296 (640)
Q Consensus 226 ---~---~-~~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~L 296 (640)
. + ++.|+||+|++ .++|.+||.+++........ ....++.++++.++++.+||.+..+ .-+.++++|
T Consensus 79 ~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~--~l~~~p~~L 154 (326)
T PRK11022 79 SEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ--GGNKKTRRQRAIDLLNQVGIPDPAS--RLDVYPHQL 154 (326)
T ss_pred CHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHH--HHhCCchhC
Confidence 1 1 24699999998 57899999999876654321 2345566778999999999975221 113457899
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCcHHHhccCEEEEEcCCeEE
Q 006571 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (640)
Q Consensus 297 SGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv 375 (640)
||||||||+|||||+.+|++||+||||+|||+.++.++++.|+++.+ .|.|+|++|||+. .+.++||+|++|++|+|+
T Consensus 155 SgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~-~~~~~adri~vm~~G~iv 233 (326)
T PRK11022 155 SGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA-LVAEAAHKIIVMYAGQVV 233 (326)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999986 4899999999976 466889999999999999
Q ss_pred EecChHHHH
Q 006571 376 YFGKASEAM 384 (640)
Q Consensus 376 ~~G~~~~~~ 384 (640)
+.|+++++.
T Consensus 234 e~g~~~~~~ 242 (326)
T PRK11022 234 ETGKAHDIF 242 (326)
T ss_pred EECCHHHHh
Confidence 999999885
No 125
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-43 Score=368.26 Aligned_cols=219 Identities=26% Similarity=0.453 Sum_probs=188.0
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++||+++|. ...+++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 5 ~l~~~~l~~~~~------~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~--p~~G~i~~~g~~i~~~~~ 76 (279)
T PRK13635 5 IIRVEHISFRYP------DAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL--PEAGTITVGGMVLSEETV 76 (279)
T ss_pred eEEEEEEEEEeC------CCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEECCcCcH
Confidence 599999999982 123569999999999999999999999999999999999653 468999999998752
Q ss_pred -hccCcEEEEccCCC-CCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHH
Q 006571 226 -SLKSKIGFVTQDDV-LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (640)
Q Consensus 226 -~~~~~i~yV~Q~~~-l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (640)
..++.|+|++|++. +++.+||.|||.++.... ..+.++..+++.++++.+||.+..++. +..||||||||
T Consensus 77 ~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LS~G~~qr 148 (279)
T PRK13635 77 WDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNRE-----PHRLSGGQKQR 148 (279)
T ss_pred HHHhhheEEEEeCHHHhcccccHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCC-----cccCCHHHHHH
Confidence 34678999999973 566789999999875432 234455566789999999998766654 46899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHH
Q 006571 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (640)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (640)
++|||||+.+|+||||||||+|||+.++..+.+.|++++++ |+|||++||++.. + ..||+|++|++|++++.|++++
T Consensus 149 v~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~-~-~~~d~i~~l~~G~i~~~g~~~~ 226 (279)
T PRK13635 149 VAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDE-A-AQADRVIVMNKGEILEEGTPEE 226 (279)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHH-H-HcCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999999875 8999999999764 5 4699999999999999999988
Q ss_pred HHH
Q 006571 383 AMA 385 (640)
Q Consensus 383 ~~~ 385 (640)
+..
T Consensus 227 ~~~ 229 (279)
T PRK13635 227 IFK 229 (279)
T ss_pred Hhc
Confidence 753
No 126
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-43 Score=364.22 Aligned_cols=213 Identities=31% Similarity=0.482 Sum_probs=183.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhcc
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~ 228 (640)
+|+++|++++| +++.+|+|+||+|++|++++|+||||||||||+++|+|... +.+|+|.++|+++.. ..
T Consensus 1 ml~~~~l~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~-~~ 69 (255)
T PRK11248 1 MLQISHLYADY--------GGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP--YQHGSITLDGKPVEG-PG 69 (255)
T ss_pred CEEEEEEEEEe--------CCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCC-CC
Confidence 37899999998 24579999999999999999999999999999999999653 568999999998753 33
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHH
Q 006571 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN 308 (640)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~ 308 (640)
..++|++|++.+++.+||.||+.++...+ .....+..+++.++++.+||.+..++ .+..||||||||++|||
T Consensus 70 ~~~~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~-----~~~~LSgGq~qrl~lar 141 (255)
T PRK11248 70 AERGVVFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKR-----YIWQLSGGQRQRVGIAR 141 (255)
T ss_pred CcEEEEeCCCccCCCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhHhhC-----ChhhCCHHHHHHHHHHH
Confidence 56999999999999899999999865432 12344455678899999999866554 34689999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCcHHHhccCEEEEEc--CCeEEEecChH
Q 006571 309 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLG--KGSLLYFGKAS 381 (640)
Q Consensus 309 aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~tH~~~~~i~~~~D~i~vL~--~G~iv~~G~~~ 381 (640)
+|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++. .+..+||+|++|+ +|+++..++.+
T Consensus 142 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 142 ALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 99999999999999999999999999999999864 5899999999975 5778899999998 59999988653
No 127
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.8e-44 Score=369.82 Aligned_cols=215 Identities=25% Similarity=0.425 Sum_probs=184.1
Q ss_pred EEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----h
Q 006571 151 KFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----S 226 (640)
Q Consensus 151 ~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~ 226 (640)
.++|++++| +++.+|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++.. .
T Consensus 26 ~~~~~~~~~--------~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~--p~~G~i~i~g~~~~~~~~~~ 95 (269)
T cd03294 26 SKEEILKKT--------GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE--PTSGKVLIDGQDIAAMSRKE 95 (269)
T ss_pred hhhhhhhhc--------CCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccChhh
Confidence 455777666 45679999999999999999999999999999999999653 568999999998742 1
Q ss_pred ----ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHH
Q 006571 227 ----LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (640)
Q Consensus 227 ----~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (640)
.+++++|++|++.+++.+||+||+.+..... .....+..+++.++++.+||.+..++. +..|||||||
T Consensus 96 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~Gq~q 167 (269)
T cd03294 96 LRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEHKY-----PDELSGGMQQ 167 (269)
T ss_pred hhhhhcCcEEEEecCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCC-----cccCCHHHHH
Confidence 1357999999999999999999999875432 123344556788999999998766654 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChH
Q 006571 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (640)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (640)
|++|||||+.+|+||||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.++||++++|++|++++.|+++
T Consensus 168 rv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~g~~~ 246 (269)
T cd03294 168 RVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIAIMKDGRLVQVGTPE 246 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999754 899999999975 467889999999999999999998
Q ss_pred HHH
Q 006571 382 EAM 384 (640)
Q Consensus 382 ~~~ 384 (640)
++.
T Consensus 247 ~~~ 249 (269)
T cd03294 247 EIL 249 (269)
T ss_pred HHH
Confidence 864
No 128
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=1.3e-43 Score=357.78 Aligned_cols=215 Identities=28% Similarity=0.451 Sum_probs=175.8
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (640)
|+++||+++|..+ .+..++|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 2 l~~~~v~~~~~~~----~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~ 75 (228)
T cd03257 2 LEVKNLSVSFPTG----GGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK--PTSGSIIFDGKDLLKLSRR 75 (228)
T ss_pred eEEEeeeEeccCC----CcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEccccchh
Confidence 7899999998211 011369999999999999999999999999999999999643 568999999998742
Q ss_pred ---hccCcEEEEccCC--CCCCCCCHHHHHHHHHhccCCCCccHHHHHHH-HHHHHHHcCCC-ccccccccCccCCcCCH
Q 006571 226 ---SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKR-AIDVINELGLE-RCQDTMIGGSFVRGVSG 298 (640)
Q Consensus 226 ---~~~~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~-v~~~l~~lgL~-~~~~t~vg~~~~~~LSG 298 (640)
..++.++|++|++ .+++.+||+||+.+......+ . ......+. +.++++.++|. +..+. .+..|||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~-~-~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LS~ 148 (228)
T cd03257 76 LRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGK-L-SKKEARKEAVLLLLVGVGLPEEVLNR-----YPHELSG 148 (228)
T ss_pred hHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccC-C-cHHHHHHHHHHHHHHHCCCChhHhhC-----CchhcCH
Confidence 3467899999998 567789999999886543211 1 11222222 35788999985 34443 3568999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEe
Q 006571 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (640)
Q Consensus 299 GqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (640)
|||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+.+.||++++|++|+++..
T Consensus 149 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~ 227 (228)
T cd03257 149 GQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADRVAVMYAGKIVEE 227 (228)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEeCCEEEec
Confidence 9999999999999999999999999999999999999999999875 899999999975 46678999999999999876
Q ss_pred c
Q 006571 378 G 378 (640)
Q Consensus 378 G 378 (640)
|
T Consensus 228 g 228 (228)
T cd03257 228 G 228 (228)
T ss_pred C
Confidence 5
No 129
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=2.2e-43 Score=375.80 Aligned_cols=227 Identities=25% Similarity=0.430 Sum_probs=191.6
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--cccEEEECCEeCCh
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT--VGGSITYNDHPYSK 225 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~--~~G~I~~~G~~~~~ 225 (640)
..|+++||++.|..+ .+...+|+||||+|++||+++|+|+||||||||+++|+|.+. +. .+|+|.++|+++..
T Consensus 11 ~~L~i~~l~~~~~~~----~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~-p~~~~sG~I~~~G~~i~~ 85 (330)
T PRK09473 11 ALLDVKDLRVTFSTP----DGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLA-ANGRIGGSATFNGREILN 85 (330)
T ss_pred ceEEEeCeEEEEecC----CCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC-CCCCCCeEEEECCEECCc
Confidence 369999999998421 123579999999999999999999999999999999999653 32 48999999998742
Q ss_pred ----h---cc-CcEEEEccCC--CCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCc
Q 006571 226 ----S---LK-SKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRG 295 (640)
Q Consensus 226 ----~---~~-~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~ 295 (640)
. +| +.|+||+|++ .++|.+|+.+++.+...... ..+..+..+++.++++.+||++..+. -+.++++
T Consensus 86 ~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~--~~~~p~~ 161 (330)
T PRK09473 86 LPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKR--MKMYPHE 161 (330)
T ss_pred CCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHH--hcCCccc
Confidence 1 23 4799999998 68899999999987654321 23455666788999999999764322 2356789
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeE
Q 006571 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (640)
Q Consensus 296 LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~i 374 (640)
|||||||||+|||||+.+|++||+||||+|||+.++..+++.|+++.++ |.|+|++|||+. .+.++||+|++|++|+|
T Consensus 162 LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~~Dri~vm~~G~i 240 (330)
T PRK09473 162 FSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAGICDKVLVMYAGRT 240 (330)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999865 899999999976 46678999999999999
Q ss_pred EEecChHHHH
Q 006571 375 LYFGKASEAM 384 (640)
Q Consensus 375 v~~G~~~~~~ 384 (640)
++.|+++++.
T Consensus 241 ve~g~~~~i~ 250 (330)
T PRK09473 241 MEYGNARDVF 250 (330)
T ss_pred EEECCHHHHH
Confidence 9999999885
No 130
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-43 Score=364.64 Aligned_cols=217 Identities=27% Similarity=0.472 Sum_probs=185.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
+|+++||+++| +++.+|+|+||+|++|++++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 2 ~l~~~~l~~~~--------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--p~~G~i~~~g~~~~~~~~ 71 (258)
T PRK13548 2 MLEARNLSVRL--------GGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS--PDSGEVRLNGRPLADWSP 71 (258)
T ss_pred eEEEEeEEEEe--------CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEcccCCH
Confidence 48899999998 34579999999999999999999999999999999999653 568999999998642
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHH
Q 006571 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (640)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (640)
..++.++|++|++.+++.+||+||+.++.... ....+...+++.++++.+||.+..++. +..|||||||||
T Consensus 72 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGe~qrv 143 (258)
T PRK13548 72 AELARRRAVLPQHSSLSFPFTVEEVVAMGRAPH---GLSRAEDDALVAAALAQVDLAHLAGRD-----YPQLSGGEQQRV 143 (258)
T ss_pred HHhhhheEEEccCCcCCCCCCHHHHHHhhhccc---CCCcHHHHHHHHHHHHHcCCHhHhcCC-----cccCCHHHHHHH
Confidence 34567999999998877899999999864321 112233445678899999998766654 468999999999
Q ss_pred HHHHHHh------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEe
Q 006571 305 CIGNEII------INPSLLFLDEPTSGLDSTTALRIVQMLQDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (640)
Q Consensus 305 ~IA~aL~------~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~-~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (640)
+|||||+ .+|++|||||||+|||+.++..+.+.|++++ ++|+|||++||++. .+.++||+|++|++|++++.
T Consensus 144 ~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~ 222 (258)
T PRK13548 144 QLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADRIVLLHQGRLVAD 222 (258)
T ss_pred HHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCEEEEEECCEEEee
Confidence 9999999 5999999999999999999999999999998 56899999999975 46779999999999999999
Q ss_pred cChHHHH
Q 006571 378 GKASEAM 384 (640)
Q Consensus 378 G~~~~~~ 384 (640)
|+++++.
T Consensus 223 ~~~~~~~ 229 (258)
T PRK13548 223 GTPAEVL 229 (258)
T ss_pred CCHHHHh
Confidence 9988764
No 131
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.8e-44 Score=356.16 Aligned_cols=220 Identities=26% Similarity=0.473 Sum_probs=195.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.++.++|+++| +.-.+++||||++++||+++|+||||||||||+|+|+|.+. |++|+|.++|+++..
T Consensus 4 lL~v~~l~k~F--------GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~--P~~G~v~~~G~~it~l~p 73 (250)
T COG0411 4 LLEVRGLSKRF--------GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYK--PSSGTVIFRGRDITGLPP 73 (250)
T ss_pred eeeeccceeec--------CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeeccccc--CCCceEEECCcccCCCCH
Confidence 58899999998 56789999999999999999999999999999999999654 568999999999863
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhccC--------CC-CccHHHHHHHHHHHHHHcCCCccccccccCccCC
Q 006571 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRL--------PN-TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVR 294 (640)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~--------~~-~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~ 294 (640)
..|..|+--||...+|++|||.||+..++..+. +. ....++..+++.++|+.+||.+.+|+.. .
T Consensus 74 ~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A-----~ 148 (250)
T COG0411 74 HRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPA-----G 148 (250)
T ss_pred HHHHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchh-----h
Confidence 235678999999999999999999998865331 11 1134556778999999999999999865 4
Q ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCe
Q 006571 295 GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (640)
Q Consensus 295 ~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~ 373 (640)
+||+|||||+.|||||+.+|++|+||||.+||.+....++.+.|+++.++ |.||++|-||.. .+..+||||+||+.|+
T Consensus 149 ~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~-~Vm~l~dri~Vl~~G~ 227 (250)
T COG0411 149 NLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMK-LVMGLADRIVVLNYGE 227 (250)
T ss_pred cCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccH-HHhhhccEEEeccCCc
Confidence 79999999999999999999999999999999999999999999999974 799999999965 5899999999999999
Q ss_pred EEEecChHHHH
Q 006571 374 LLYFGKASEAM 384 (640)
Q Consensus 374 iv~~G~~~~~~ 384 (640)
++..|+|+++.
T Consensus 228 ~IAeG~P~eV~ 238 (250)
T COG0411 228 VIAEGTPEEVR 238 (250)
T ss_pred CcccCCHHHHh
Confidence 99999999985
No 132
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=1e-43 Score=355.10 Aligned_cols=207 Identities=32% Similarity=0.551 Sum_probs=177.7
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (640)
|+++||+++| +++++|+|+||++++|++++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 1 l~~~~l~~~~--------~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~ 70 (213)
T cd03262 1 IEIKNLHKSF--------GDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE--PDSGTIIIDGLKLTDDKKN 70 (213)
T ss_pred CEEEEEEEEE--------CCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCccchh
Confidence 4789999998 23579999999999999999999999999999999999653 568999999998731
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHH
Q 006571 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (640)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (640)
..++.++|++|++.+++.+|++||+.++..... ....++..+++.++++.+|+.+..++. +..||||||||
T Consensus 71 ~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr 143 (213)
T cd03262 71 INELRQKVGMVFQQFNLFPHLTVLENITLAPIKVK--GMSKAEAEERALELLEKVGLADKADAY-----PAQLSGGQQQR 143 (213)
T ss_pred HHHHHhcceEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhhC-----ccccCHHHHHH
Confidence 346789999999999998999999998643111 123344556788899999997766553 47899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeE
Q 006571 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (640)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~i 374 (640)
++|||||+.+|++|||||||+|||+.++..+.+.|+++++.|+|||++||++. ++.++||++++|++|++
T Consensus 144 v~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~-~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 144 VAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG-FAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999999999877899999999975 46788999999999974
No 133
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=2.5e-43 Score=359.38 Aligned_cols=219 Identities=26% Similarity=0.414 Sum_probs=185.9
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++|++++| +++++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 2 ~i~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~ 71 (242)
T TIGR03411 2 ILYLEGLSVSF--------DGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR--PDEGSVLFGGTDLTGLPE 71 (242)
T ss_pred eEEEEeeEEEc--------CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCeecCCCCH
Confidence 48999999998 23579999999999999999999999999999999999653 468999999998742
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCC--C---CccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCH
Q 006571 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP--N---TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (640)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~--~---~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (640)
..++.++|++|++.+++.+||+||+.++...... . ....++.+++++++++.+|+.+..++. ++.|||
T Consensus 72 ~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 146 (242)
T TIGR03411 72 HQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRL-----AGLLSH 146 (242)
T ss_pred HHHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCH
Confidence 1245699999999999999999999986432100 0 011234456788999999998766653 468999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEec
Q 006571 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (640)
Q Consensus 299 GqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (640)
||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.++||+|++|++|++++.|
T Consensus 147 Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~g~~~~~~ 224 (242)
T TIGR03411 147 GQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDME-FVRSIADKVTVLHQGSVLAEG 224 (242)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHH-HHHHhCCEEEEEECCeEEeeC
Confidence 999999999999999999999999999999999999999999976 789999999965 477889999999999999999
Q ss_pred ChHHHH
Q 006571 379 KASEAM 384 (640)
Q Consensus 379 ~~~~~~ 384 (640)
+++++.
T Consensus 225 ~~~~~~ 230 (242)
T TIGR03411 225 SLDQVQ 230 (242)
T ss_pred CHHHHh
Confidence 988763
No 134
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=6.6e-44 Score=354.96 Aligned_cols=202 Identities=29% Similarity=0.506 Sum_probs=172.0
Q ss_pred EEEeEEEEEeecccccccc-ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh-hcc
Q 006571 151 KFTDVTYKVILKGMTSSEE-KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-SLK 228 (640)
Q Consensus 151 ~~~~vs~~~~~~~~~~~~~-~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-~~~ 228 (640)
+++||+++| ++ +++|+|+||++++||+++|+|||||||||||++|+|... +.+|+|.++|.++.. ..+
T Consensus 1 ~~~~l~~~~--------~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~ 70 (205)
T cd03226 1 RIENISFSY--------KKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK--ESSGSILLNGKPIKAKERR 70 (205)
T ss_pred CcccEEEEe--------CCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEhhhHHhh
Confidence 367899988 23 579999999999999999999999999999999999653 568999999998743 345
Q ss_pred CcEEEEccCCC-CCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHH
Q 006571 229 SKIGFVTQDDV-LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (640)
Q Consensus 229 ~~i~yV~Q~~~-l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (640)
+.++|++|++. .+..+||+||+.++.... . ...+++.++++.+||.+..++. +..||||||||++||
T Consensus 71 ~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~---~----~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la 138 (205)
T cd03226 71 KSIGYVMQDVDYQLFTDSVREELLLGLKEL---D----AGNEQAETVLKDLDLYALKERH-----PLSLSGGQKQRLAIA 138 (205)
T ss_pred cceEEEecChhhhhhhccHHHHHhhhhhhc---C----ccHHHHHHHHHHcCCchhcCCC-----chhCCHHHHHHHHHH
Confidence 67999999974 233579999998864321 1 1124678899999998766654 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEE
Q 006571 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (640)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv 375 (640)
|||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|+++
T Consensus 139 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 139 AALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYE-FLAKVCDRVLLLANGAIV 205 (205)
T ss_pred HHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEC
Confidence 9999999999999999999999999999999999877999999999975 466789999999999975
No 135
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=1.8e-43 Score=356.08 Aligned_cols=208 Identities=27% Similarity=0.489 Sum_probs=179.0
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (640)
|+++||+++|+ +++.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 2 l~~~~l~~~~~-------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~~~~~ 72 (222)
T PRK10908 2 IRFEHVSKAYL-------GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIER--PSAGKIWFSGHDITRLKNR 72 (222)
T ss_pred EEEEeeEEEec-------CCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccCChh
Confidence 78999999982 23579999999999999999999999999999999999653 568999999998742
Q ss_pred ---hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHH
Q 006571 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (640)
Q Consensus 226 ---~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (640)
.+++.++|++|++.+++.+|++||+.+..... ....++..+++.++++.++|.+..++ .+..|||||||
T Consensus 73 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~q 144 (222)
T PRK10908 73 EVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA---GASGDDIRRRVSAALDKVGLLDKAKN-----FPIQLSGGEQQ 144 (222)
T ss_pred HHHHHHhheEEEecCccccccccHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhC-----CchhCCHHHHH
Confidence 14678999999999888899999999875432 12344445567889999999876554 34689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEE
Q 006571 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (640)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv 375 (640)
|++|||||+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++. .+...||+|++|++|+++
T Consensus 145 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 145 RVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG-LISRRSYRMLTLSDGHLH 216 (222)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEc
Confidence 999999999999999999999999999999999999999877899999999975 466789999999999975
No 136
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-43 Score=366.69 Aligned_cols=221 Identities=25% Similarity=0.423 Sum_probs=184.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++||+++|... ....+++|+|+||+|++|++++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 2 ~l~~~~l~~~~~~~---~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~~~~~ 76 (280)
T PRK13649 2 GINLQNVSYTYQAG---TPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV--PTQGSVRVDDTLITSTSK 76 (280)
T ss_pred eEEEEEEEEEcCCC---CccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccccc
Confidence 37899999998311 0012469999999999999999999999999999999999653 568999999998642
Q ss_pred -----hccCcEEEEccCC--CCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCc-cccccccCccCCcCC
Q 006571 226 -----SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVS 297 (640)
Q Consensus 226 -----~~~~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~LS 297 (640)
.+++.|+|++|++ .+++ .||+||+.+..... ....++..++++++++.+||.+ ..+. .+..||
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LS 147 (280)
T PRK13649 77 NKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGISESLFEK-----NPFELS 147 (280)
T ss_pred ccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhC-----CcccCC
Confidence 3467799999997 4665 69999999865432 1234445566888999999963 3443 356899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEe
Q 006571 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (640)
Q Consensus 298 GGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (640)
||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||++++|++|++++.
T Consensus 148 gG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~ 226 (280)
T PRK13649 148 GGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADFVYVLEKGKLVLS 226 (280)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999999877899999999975 46788999999999999999
Q ss_pred cChHHHH
Q 006571 378 GKASEAM 384 (640)
Q Consensus 378 G~~~~~~ 384 (640)
|+++++.
T Consensus 227 g~~~~~~ 233 (280)
T PRK13649 227 GKPKDIF 233 (280)
T ss_pred CCHHHHh
Confidence 9998874
No 137
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-43 Score=374.69 Aligned_cols=227 Identities=26% Similarity=0.431 Sum_probs=191.4
Q ss_pred eEEEEeEEEEEeeccc--cccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh-
Q 006571 149 YLKFTDVTYKVILKGM--TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~--~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~- 225 (640)
.|+++||++.|..+.. ...+.+.+|+||||+|++||++||+|+||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~--p~~G~i~~~g~~l~~~ 82 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIET--PTGGELYYQGQDLLKA 82 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCC--CCCcEEEECCEEcCcC
Confidence 6999999999843210 00113579999999999999999999999999999999999653 468999999998742
Q ss_pred ------hccCcEEEEccCC--CCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCc-cccccccCccCCcC
Q 006571 226 ------SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGV 296 (640)
Q Consensus 226 ------~~~~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~L 296 (640)
.++++|+||+|++ .++|.+||.+++........ ...+.+..+++.++++.+||.+ ..+ .++++|
T Consensus 83 ~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~-----~~p~~L 155 (327)
T PRK11308 83 DPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINT--SLSAAERREKALAMMAKVGLRPEHYD-----RYPHMF 155 (327)
T ss_pred CHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHCCCChHHhc-----CCCccC
Confidence 2467899999998 58899999999987654321 2345566778999999999963 444 356899
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEE
Q 006571 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (640)
Q Consensus 297 SGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv 375 (640)
||||||||+|||||+.+|++||+||||++||..++.+|++.|+++.++ |.|||++|||+. .+.++||+|++|++|+|+
T Consensus 156 SgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~adrv~vm~~G~iv 234 (327)
T PRK11308 156 SGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VVEHIADEVMVMYLGRCV 234 (327)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999764 999999999975 466789999999999999
Q ss_pred EecChHHHHH
Q 006571 376 YFGKASEAMA 385 (640)
Q Consensus 376 ~~G~~~~~~~ 385 (640)
+.|+++++..
T Consensus 235 e~g~~~~~~~ 244 (327)
T PRK11308 235 EKGTKEQIFN 244 (327)
T ss_pred EECCHHHHhc
Confidence 9999998853
No 138
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-43 Score=366.97 Aligned_cols=217 Identities=26% Similarity=0.452 Sum_probs=186.1
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
+|+++||+++|. +++++|+||||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 1 ml~~~~l~~~~~-------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~ 71 (274)
T PRK13644 1 MIRLENVSYSYP-------DGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR--PQKGKVLVSGIDTGDFSK 71 (274)
T ss_pred CEEEEEEEEEcC-------CCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEECCcccc
Confidence 378999999982 23569999999999999999999999999999999999653 468999999998742
Q ss_pred --hccCcEEEEccCCC-CCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHH
Q 006571 226 --SLKSKIGFVTQDDV-LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (640)
Q Consensus 226 --~~~~~i~yV~Q~~~-l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (640)
..++.++||+|++. .+...||.||+.+..... ..+..+..+++.++++.+||.+..++. +..|||||||
T Consensus 72 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~q 143 (274)
T PRK13644 72 LQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRS-----PKTLSGGQGQ 143 (274)
T ss_pred HHHHHhheEEEEEChhhhcccchHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCC-----cccCCHHHHH
Confidence 34678999999975 355689999999875432 234455566788999999998766654 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHH
Q 006571 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (640)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (640)
|++|||||+.+|+||||||||+|||+.++..+.+.|++++++|+|||++||++.. + ..||+|++|++|++++.|++++
T Consensus 144 rv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~-~-~~~d~v~~l~~G~i~~~g~~~~ 221 (274)
T PRK13644 144 CVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEE-L-HDADRIIVMDRGKIVLEGEPEN 221 (274)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-H-hhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999999999998779999999999764 5 5699999999999999999988
Q ss_pred HH
Q 006571 383 AM 384 (640)
Q Consensus 383 ~~ 384 (640)
+.
T Consensus 222 ~~ 223 (274)
T PRK13644 222 VL 223 (274)
T ss_pred Hh
Confidence 64
No 139
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=3.2e-45 Score=418.26 Aligned_cols=354 Identities=21% Similarity=0.261 Sum_probs=240.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchhhh
Q 006571 11 ARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGAA 90 (640)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 90 (640)
.+..++..++..+...|.+++.+|+++++.+..+.+++.+......+...+.....+...........-..+.-+..|+.
T Consensus 184 ~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~ 263 (585)
T TIGR01192 184 QAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLNRMASTISMMCILVIGTV 263 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34446667788889999999999999999988887777765554332221100000000000001111112233456777
Q ss_pred HhhhhhhhhhhhhccccCCC----CccccccCCC------CCCCCCccccccccC--CCCCCCCCCCCCeeEEEEeEEEE
Q 006571 91 LSRASSASLGLSFSFTGFTM----PPDEIADSKP------FSDDDIPEDIEAGTR--ERPKFQTEPTLPIYLKFTDVTYK 158 (640)
Q Consensus 91 ~~~~~~~~~g~~~~~~~~~~----~~~~~~~~~~------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~vs~~ 158 (640)
++..|..+.|.+.++..+.. |...+..... ....++.+..+..+. ........+.....++++||+|+
T Consensus 264 ~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~ 343 (585)
T TIGR01192 264 LVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPADAPELPNVKGAVEFRHITFE 343 (585)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCccCCCCCCCCCeEEEEEEEEE
Confidence 77777777777666553221 2111110000 000000000000000 00000001111235999999999
Q ss_pred EeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hccCcEEEE
Q 006571 159 VILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFV 234 (640)
Q Consensus 159 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~i~yV 234 (640)
|+ +++++|+|+|++|++||.+||+||||||||||+++|+|.. + +.+|+|.+||.++.+ .+++.++||
T Consensus 344 y~-------~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~-~-~~~G~i~~~g~~~~~~~~~~~~~~i~~v 414 (585)
T TIGR01192 344 FA-------NSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVY-D-PTVGQILIDGIDINTVTRESLRKSIATV 414 (585)
T ss_pred CC-------CCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCC-C-CCCCEEEECCEEhhhCCHHHHHhheEEE
Confidence 83 2246999999999999999999999999999999999854 3 468999999998753 568899999
Q ss_pred ccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHH-----HHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHH
Q 006571 235 TQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRA-----IDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (640)
Q Consensus 235 ~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v-----~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~a 309 (640)
+|++.+|+ .|++|||.++. + ..++++..+.. ++.+. .+++..||.+|.. ...||||||||++||||
T Consensus 415 ~q~~~lf~-~ti~~Ni~~~~----~-~~~~~~~~~a~~~~~~~~~i~--~l~~g~~t~~~~~-~~~LSgGq~qrl~lARa 485 (585)
T TIGR01192 415 FQDAGLFN-RSIRENIRLGR----E-GATDEEVYEAAKAAAAHDFIL--KRSNGYDTLVGER-GNRLSGGERQRLAIARA 485 (585)
T ss_pred ccCCccCc-ccHHHHHhcCC----C-CCCHHHHHHHHHHhCcHHHHH--hccccccchhcCC-CCCCCHHHHHHHHHHHH
Confidence 99999997 59999999863 1 12333322222 22232 3466678887754 56799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHH
Q 006571 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (640)
Q Consensus 310 L~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (640)
|+++|++|+|||||++||+.++..+.+.|+++. +++|+|++||+++. ...||+|++|++|++++.|+++++.+
T Consensus 486 ll~~p~ililDEpts~LD~~~~~~i~~~l~~~~-~~~tvI~isH~~~~--~~~~d~i~~l~~G~i~~~g~~~~l~~ 558 (585)
T TIGR01192 486 ILKNAPILVLDEATSALDVETEARVKNAIDALR-KNRTTFIIAHRLST--VRNADLVLFLDQGRLIEKGSFQELIQ 558 (585)
T ss_pred HhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcChHH--HHcCCEEEEEECCEEEEECCHHHHHH
Confidence 999999999999999999999999999999875 48999999999853 46799999999999999999999864
No 140
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=1.8e-43 Score=355.48 Aligned_cols=210 Identities=30% Similarity=0.535 Sum_probs=176.5
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (640)
|+++||+++|.. ..+.+++|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 2 l~~~~v~~~~~~----~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~ 75 (221)
T TIGR02211 2 LKCENLGKRYQE----GKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN--PTSGEVLFNGQSLSKLSSN 75 (221)
T ss_pred EEEEeeeEEccC----CCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEhhhcCHh
Confidence 689999999831 1112579999999999999999999999999999999999653 568999999998742
Q ss_pred h---cc-CcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHH
Q 006571 226 S---LK-SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (640)
Q Consensus 226 ~---~~-~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 301 (640)
. ++ +.++||+|++.+++.+||+||+.+....+ .....+..+++.++++.+||.+..++. +..||||||
T Consensus 76 ~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~ 147 (221)
T TIGR02211 76 ERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIG---KKSVKEAKERAYEMLEKVGLEHRINHR-----PSELSGGER 147 (221)
T ss_pred HHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHH
Confidence 1 23 57999999999998899999999865432 122334456678899999998666543 468999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEE
Q 006571 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (640)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv 375 (640)
||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+ ..+|++++|++|+++
T Consensus 148 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~-~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 148 QRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LA-KKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-hhcCEEEEEeCCEec
Confidence 9999999999999999999999999999999999999999764 899999999976 34 558999999999975
No 141
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=4.3e-45 Score=416.62 Aligned_cols=353 Identities=24% Similarity=0.334 Sum_probs=244.0
Q ss_pred HhHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchh
Q 006571 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSG 88 (640)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 88 (640)
+.++..++...+..+...+.....+++|+++.+....+++.+..........+....................+.-+..|
T Consensus 184 ~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 263 (576)
T TIGR02204 184 KLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTAIVIVLVFGAIVGVLWVG 263 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677788888999999999999999999988888887766543333221110000000000111111122333457
Q ss_pred hhHhhhhhhhhhhhhccccCCC----Cccccc------------cCCCCCCCCCccccccccCCCCCCCCCCCCCeeEEE
Q 006571 89 AALSRASSASLGLSFSFTGFTM----PPDEIA------------DSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKF 152 (640)
Q Consensus 89 ~~~~~~~~~~~g~~~~~~~~~~----~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 152 (640)
+.++..+..+.|.+..+..+.. |...+. ..+.....+.+++.+... .+.. ........|++
T Consensus 264 ~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~--~~~~-~~~~~~~~i~~ 340 (576)
T TIGR02204 264 AHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPA--HPKT-LPVPLRGEIEF 340 (576)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCC--CCcc-CCcCCCceEEE
Confidence 7766666667776655542211 111111 001111111111100000 0000 00111236999
Q ss_pred EeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hcc
Q 006571 153 TDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLK 228 (640)
Q Consensus 153 ~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~~~ 228 (640)
+||+|+|+. ..++++|+|+||+++|||.++|+||||||||||+|+|+|.. + +.+|+|.+||.++.+ .++
T Consensus 341 ~~v~f~y~~-----~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~-~-p~~G~I~i~g~~i~~~~~~~~~ 413 (576)
T TIGR02204 341 EQVNFAYPA-----RPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFY-D-PQSGRILLDGVDLRQLDPAELR 413 (576)
T ss_pred EEEEEECCC-----CCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhcc-C-CCCCEEEECCEEHHhcCHHHHH
Confidence 999999832 12367999999999999999999999999999999999954 3 458999999998753 567
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcC-------CCccccccccCccCCcCCHHHH
Q 006571 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-------LERCQDTMIGGSFVRGVSGGER 301 (640)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~t~vg~~~~~~LSGGqr 301 (640)
++++|+||++.+|+. |++|||.++. + ..+++ ++.+.++..+ +++..||.+|+. ...||||||
T Consensus 414 ~~i~~~~Q~~~lf~~-Ti~~Ni~~~~----~-~~~~~----~~~~~l~~~~l~~~i~~l~~gl~t~i~~~-g~~LSgGq~ 482 (576)
T TIGR02204 414 ARMALVPQDPVLFAA-SVMENIRYGR----P-DATDE----EVEAAARAAHAHEFISALPEGYDTYLGER-GVTLSGGQR 482 (576)
T ss_pred HhceEEccCCccccc-cHHHHHhcCC----C-CCCHH----HHHHHHHHcCcHHHHHhCCCCCCceeCCC-CCcCCHHHH
Confidence 889999999999975 9999998752 1 12222 2334444433 355678888764 467999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChH
Q 006571 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (640)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (640)
||++||||++++|++|+||||||+||+.+++.+++.|+++. +++|+|++||+++ ....||+|++|++|++++.|+++
T Consensus 483 Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~-~~~t~IiitH~~~--~~~~~d~vi~l~~g~~~~~g~~~ 559 (576)
T TIGR02204 483 QRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM-KGRTTLIIAHRLA--TVLKADRIVVMDQGRIVAQGTHA 559 (576)
T ss_pred HHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEEECCEEEeeecHH
Confidence 99999999999999999999999999999999999999985 4899999999975 45789999999999999999999
Q ss_pred HHHH
Q 006571 382 EAMA 385 (640)
Q Consensus 382 ~~~~ 385 (640)
++.+
T Consensus 560 ~l~~ 563 (576)
T TIGR02204 560 ELIA 563 (576)
T ss_pred HHHH
Confidence 8753
No 142
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-43 Score=360.57 Aligned_cols=222 Identities=22% Similarity=0.403 Sum_probs=184.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC--CCC-CcccEEEECCEeCCh
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRL--MEP-TVGGSITYNDHPYSK 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~--~~~-~~~G~I~~~G~~~~~ 225 (640)
+|+++|+++.| +++++|+|+||+|++||+++|+||||||||||+++|+|.. .++ +.+|+|.++|+++..
T Consensus 3 ~l~~~~~~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~ 74 (250)
T PRK14245 3 KIDARDVNFWY--------GDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYD 74 (250)
T ss_pred EEEEEEEEEEE--------CCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEeccc
Confidence 68999999998 3457999999999999999999999999999999999852 222 248999999998742
Q ss_pred ------hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHH
Q 006571 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (640)
Q Consensus 226 ------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (640)
..++.++|++|++.+++ .|+.||+.++...+. ....+...+.++++++.++|.+...... +..+..||||
T Consensus 75 ~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G 150 (250)
T PRK14245 75 KGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNG--VKDNAFIRQRVEETLKGAALWDEVKDKL-KESAFALSGG 150 (250)
T ss_pred ccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCcchhhhh-hCCcccCCHH
Confidence 34667999999999887 599999998754321 1122334566788999999865322111 2345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecC
Q 006571 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (640)
Q Consensus 300 qrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (640)
||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++. +++|||++||++. .+.+.||++++|++|++++.|+
T Consensus 151 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~-~~~~~~d~v~~l~~G~~~~~~~ 228 (250)
T PRK14245 151 QQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQ-QAARVSDKTAFFYMGEMVEYDD 228 (250)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999999995 4799999999976 4678899999999999999999
Q ss_pred hHHHH
Q 006571 380 ASEAM 384 (640)
Q Consensus 380 ~~~~~ 384 (640)
++++.
T Consensus 229 ~~~~~ 233 (250)
T PRK14245 229 TKKIF 233 (250)
T ss_pred HHHHh
Confidence 99874
No 143
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-43 Score=361.61 Aligned_cols=220 Identities=23% Similarity=0.371 Sum_probs=185.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++||+++| +++++|+|+||++++|++++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 5 ~l~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~ 74 (255)
T PRK11300 5 LLSVSGLMMRF--------GGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK--PTGGTILLRGQHIEGLPG 74 (255)
T ss_pred eEEEeeEEEEE--------CCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcC--CCcceEEECCEECCCCCH
Confidence 59999999998 34679999999999999999999999999999999999643 568999999998742
Q ss_pred -h-ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCC----------CCc--cHHHHHHHHHHHHHHcCCCccccccccCc
Q 006571 226 -S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP----------NTL--TKQQKEKRAIDVINELGLERCQDTMIGGS 291 (640)
Q Consensus 226 -~-~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~----------~~~--~~~~~~~~v~~~l~~lgL~~~~~t~vg~~ 291 (640)
. .+..++|++|++.+++.+||+||+.++...... ... ...+..+.+.++++.+||.+..++.
T Consensus 75 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~---- 150 (255)
T PRK11300 75 HQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQ---- 150 (255)
T ss_pred HHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCC----
Confidence 1 234689999999999999999999986431100 000 1122345678889999997666543
Q ss_pred cCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEc
Q 006571 292 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLG 370 (640)
Q Consensus 292 ~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~ 370 (640)
+..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+.+.||++++|+
T Consensus 151 -~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~ 228 (255)
T PRK11300 151 -AGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK-LVMGISDRIYVVN 228 (255)
T ss_pred -hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHHhCCEEEEEE
Confidence 4689999999999999999999999999999999999999999999999875 899999999975 5678899999999
Q ss_pred CCeEEEecChHHHH
Q 006571 371 KGSLLYFGKASEAM 384 (640)
Q Consensus 371 ~G~iv~~G~~~~~~ 384 (640)
+|++++.|+++++.
T Consensus 229 ~g~i~~~~~~~~~~ 242 (255)
T PRK11300 229 QGTPLANGTPEEIR 242 (255)
T ss_pred CCeEEecCCHHHHh
Confidence 99999999988763
No 144
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-43 Score=382.23 Aligned_cols=204 Identities=25% Similarity=0.460 Sum_probs=178.8
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----h----ccCcEEEEccCCCCC
Q 006571 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----S----LKSKIGFVTQDDVLF 241 (640)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~----~~~~i~yV~Q~~~l~ 241 (640)
..+|+|+||+|++||+++|+||||||||||+|+|+|.+. +.+|+|.++|+++.. . .++.++||+|++.+|
T Consensus 41 ~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~--p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~ 118 (400)
T PRK10070 41 SLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE--PTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALM 118 (400)
T ss_pred eEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC--CCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCC
Confidence 348999999999999999999999999999999999653 568999999998742 1 135799999999999
Q ss_pred CCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 006571 242 PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 321 (640)
Q Consensus 242 ~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDE 321 (640)
+.+||+||+.++...+ ..+.++..+++.++++.+||.+..++ .++.|||||||||+|||||+.+|++|||||
T Consensus 119 ~~~Tv~enl~~~~~~~---~~~~~~~~~~~~e~L~~~gL~~~~~~-----~~~~LSgGq~QRv~LArAL~~~P~iLLLDE 190 (400)
T PRK10070 119 PHMTVLDNTAFGMELA---GINAEERREKALDALRQVGLENYAHS-----YPDELSGGMRQRVGLARALAINPDILLMDE 190 (400)
T ss_pred CCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCChhhhc-----CcccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 9999999999986543 23345556778899999999876665 457899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHH
Q 006571 322 PTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (640)
Q Consensus 322 PTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (640)
||+|||+.++..+.+.|+++.+ .|+|||++||++. ++.++||+|++|++|+++..|+++++.
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~-~~~~~~Dri~vL~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 191 AFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-EAMRIGDRIAIMQNGEVVQVGTPDEIL 253 (400)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH-HHHHhCCEEEEEECCEEEecCCHHHHH
Confidence 9999999999999999999975 4899999999975 577899999999999999999998875
No 145
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.3e-43 Score=363.07 Aligned_cols=218 Identities=24% Similarity=0.430 Sum_probs=186.0
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++|++++|. ...+.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 7 ~l~i~~l~~~~~------~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~~~~ 78 (269)
T PRK13648 7 IIVFKNVSFQYQ------SDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK--VKSGEIFYNNQAITDDNF 78 (269)
T ss_pred eEEEEEEEEEcC------CCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCcCCH
Confidence 699999999982 122469999999999999999999999999999999999653 468999999998742
Q ss_pred -hccCcEEEEccCCC-CCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHH
Q 006571 226 -SLKSKIGFVTQDDV-LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (640)
Q Consensus 226 -~~~~~i~yV~Q~~~-l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (640)
..++.++|++|++. +++..|+.+|+.+..... ....+...+++.++++.+++.+..++ .+..||||||||
T Consensus 79 ~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qr 150 (269)
T PRK13648 79 EKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADY-----EPNALSGGQKQR 150 (269)
T ss_pred HHHHhheeEEEeChHHhcccccHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhC-----CcccCCHHHHHH
Confidence 35678999999984 677789999998875432 12344455678889999999876664 357899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHH
Q 006571 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (640)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (640)
++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++.. +. .||+|++|++|++++.|++++
T Consensus 151 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~-~~-~~d~i~~l~~G~i~~~g~~~~ 228 (269)
T PRK13648 151 VAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSE-AM-EADHVIVMNKGTVYKEGTPTE 228 (269)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchH-Hh-cCCEEEEEECCEEEEecCHHH
Confidence 99999999999999999999999999999999999999764 8999999999764 54 499999999999999999988
Q ss_pred HH
Q 006571 383 AM 384 (640)
Q Consensus 383 ~~ 384 (640)
+.
T Consensus 229 ~~ 230 (269)
T PRK13648 229 IF 230 (269)
T ss_pred Hh
Confidence 74
No 146
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-43 Score=374.76 Aligned_cols=229 Identities=21% Similarity=0.311 Sum_probs=187.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CcccEEEECCEeCCh-
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP--TVGGSITYNDHPYSK- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~--~~~G~I~~~G~~~~~- 225 (640)
.|+++||+++|..+ .+.+.+|+||||+|++||+++|+|+||||||||+++|+|.+..+ +.+|+|.++|+++..
T Consensus 3 ~L~v~~l~~~y~~~----~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~ 78 (330)
T PRK15093 3 LLDIRNLTIEFKTS----DGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRL 78 (330)
T ss_pred eEEEeeeEEEEeCC----CCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcC
Confidence 58999999998432 13457999999999999999999999999999999999965421 368999999998742
Q ss_pred ---h----ccCcEEEEccCCC--CCCCCCHHHHHHHHHhccCCCC---ccHHHHHHHHHHHHHHcCCCccccccccCccC
Q 006571 226 ---S----LKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNT---LTKQQKEKRAIDVINELGLERCQDTMIGGSFV 293 (640)
Q Consensus 226 ---~----~~~~i~yV~Q~~~--l~~~lTV~Enl~~~~~~~~~~~---~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~ 293 (640)
. .++.|+||+|++. +.|.+||.+++.+......... ....+.++++.++++.+||.+..+ ..+.++
T Consensus 79 ~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~--~~~~~p 156 (330)
T PRK15093 79 SPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKD--AMRSFP 156 (330)
T ss_pred CHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHH--HHhCCc
Confidence 1 1357999999985 6788999999986432110000 012344567889999999975321 113456
Q ss_pred CcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCC
Q 006571 294 RGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKG 372 (640)
Q Consensus 294 ~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G 372 (640)
.+|||||||||+|||||+.+|+||||||||+|||+.++.++++.|+++.++ |.|||+||||+. .+.++||+|++|++|
T Consensus 157 ~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~-~v~~~~dri~vm~~G 235 (330)
T PRK15093 157 YELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ-MLSQWADKINVLYCG 235 (330)
T ss_pred hhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECC
Confidence 899999999999999999999999999999999999999999999999874 899999999975 467889999999999
Q ss_pred eEEEecChHHHH
Q 006571 373 SLLYFGKASEAM 384 (640)
Q Consensus 373 ~iv~~G~~~~~~ 384 (640)
+|++.|+++++.
T Consensus 236 ~ive~g~~~~i~ 247 (330)
T PRK15093 236 QTVETAPSKELV 247 (330)
T ss_pred EEEEECCHHHHH
Confidence 999999998875
No 147
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-43 Score=366.05 Aligned_cols=218 Identities=30% Similarity=0.525 Sum_probs=187.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.++++||+++|. +.+.+|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 3 ~l~~~~l~~~~~-------~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~ 73 (277)
T PRK13652 3 LIETRDLCYSYS-------GSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK--PTSGSVLIRGEPITKENI 73 (277)
T ss_pred eEEEEEEEEEeC-------CCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCcCCH
Confidence 589999999982 13469999999999999999999999999999999999653 568999999998742
Q ss_pred -hccCcEEEEccCCC--CCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHH
Q 006571 226 -SLKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (640)
Q Consensus 226 -~~~~~i~yV~Q~~~--l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (640)
..++.++||+|++. ++ ..||.||+.++.... ....+...++++++++.+||.+..++. ++.|||||||
T Consensus 74 ~~~~~~i~~v~q~~~~~~~-~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~Gq~q 144 (277)
T PRK13652 74 REVRKFVGLVFQNPDDQIF-SPTVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRV-----PHHLSGGEKK 144 (277)
T ss_pred HHHHhheEEEecCcccccc-cccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCC-----cccCCHHHHH
Confidence 35678999999973 45 579999998865422 234455556788999999998766654 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChH
Q 006571 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (640)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (640)
|++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||+|++|++|++++.|+++
T Consensus 145 rl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~drv~~l~~G~i~~~g~~~ 223 (277)
T PRK13652 145 RVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMADYIYVMDKGRIVAYGTVE 223 (277)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCeEEEECCHH
Confidence 999999999999999999999999999999999999999875 899999999976 467899999999999999999999
Q ss_pred HHHH
Q 006571 382 EAMA 385 (640)
Q Consensus 382 ~~~~ 385 (640)
++.+
T Consensus 224 ~~~~ 227 (277)
T PRK13652 224 EIFL 227 (277)
T ss_pred HHhc
Confidence 8753
No 148
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-43 Score=363.65 Aligned_cols=220 Identities=26% Similarity=0.455 Sum_probs=186.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
+|+++|++++| +++.+|+|+||++++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 2 ~l~~~~l~~~~--------~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~ 71 (255)
T PRK11231 2 TLRTENLTVGY--------GTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT--PQSGTVFLGDKPISMLSS 71 (255)
T ss_pred EEEEEeEEEEE--------CCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCcEEEECCEEhHHCCH
Confidence 48999999998 34579999999999999999999999999999999999643 468999999998642
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCC-CCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHH
Q 006571 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (640)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (640)
..++.++|++|++.+++.+|+.||+.++...... .........+++.++++.+||.+..++. +..||||||||
T Consensus 72 ~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr 146 (255)
T PRK11231 72 RQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRR-----LTDLSGGQRQR 146 (255)
T ss_pred HHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCC-----cccCCHHHHHH
Confidence 3456799999999998889999999985311000 0111223455678899999998766654 56899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHH
Q 006571 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (640)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (640)
++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|++++.|+++++
T Consensus 147 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 225 (255)
T PRK11231 147 AFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN-QASRYCDHLVVLANGHVMAQGTPEEV 225 (255)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHhcCEEEEEECCeEEEEcCHHHh
Confidence 99999999999999999999999999999999999999877899999999975 57789999999999999999998876
Q ss_pred H
Q 006571 384 M 384 (640)
Q Consensus 384 ~ 384 (640)
.
T Consensus 226 ~ 226 (255)
T PRK11231 226 M 226 (255)
T ss_pred c
Confidence 4
No 149
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-43 Score=364.02 Aligned_cols=208 Identities=25% Similarity=0.428 Sum_probs=180.9
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhc
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (640)
..|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++. .+
T Consensus 11 ~~l~i~~l~~~~--------~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~~-~~ 79 (257)
T PRK11247 11 TPLLLNAVSKRY--------GERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET--PSAGELLAGTAPLA-EA 79 (257)
T ss_pred CcEEEEEEEEEE--------CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEHH-Hh
Confidence 359999999998 34579999999999999999999999999999999999653 56899999998763 45
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHH
Q 006571 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (640)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (640)
++.++|++|++.+++.+||+||+.++.. . ...+++.++++.+||.+..+. .+..||||||||++||
T Consensus 80 ~~~i~~v~q~~~l~~~~tv~enl~~~~~---~------~~~~~~~~~l~~~gl~~~~~~-----~~~~LSgGqkqrl~la 145 (257)
T PRK11247 80 REDTRLMFQDARLLPWKKVIDNVGLGLK---G------QWRDAALQALAAVGLADRANE-----WPAALSGGQKQRVALA 145 (257)
T ss_pred hCceEEEecCccCCCCCcHHHHHHhccc---c------hHHHHHHHHHHHcCChhHhcC-----ChhhCCHHHHHHHHHH
Confidence 6789999999999998999999987521 0 123567889999999876554 3578999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChH
Q 006571 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (640)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (640)
|+|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++. .+.+.||+|++|++|++++.|+.+
T Consensus 146 raL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 146 RALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeecccc
Confidence 999999999999999999999999999999999865 4899999999975 467889999999999999988653
No 150
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-43 Score=362.11 Aligned_cols=224 Identities=25% Similarity=0.421 Sum_probs=186.1
Q ss_pred CeeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-C--CcccEEEECCEeC
Q 006571 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPY 223 (640)
Q Consensus 147 ~~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~-~--~~~G~I~~~G~~~ 223 (640)
...|+++|++++| +++++|+|+||+|++||+++|+||||||||||+++|+|.... | +.+|+|.++|+++
T Consensus 11 ~~~l~~~~l~~~~--------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~ 82 (260)
T PRK10744 11 PSKIQVRNLNFYY--------GKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENI 82 (260)
T ss_pred CceEEEEEEEEEe--------CCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEc
Confidence 3479999999998 235799999999999999999999999999999999996531 2 3689999999987
Q ss_pred Ch------hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCC
Q 006571 224 SK------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (640)
Q Consensus 224 ~~------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LS 297 (640)
.. .++++++|++|++.+++ .||+||+.++..... ..+.++..+++.++++.+++.+...... +..+..||
T Consensus 83 ~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS 158 (260)
T PRK10744 83 LTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKL-HQSGYSLS 158 (260)
T ss_pred cccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHH-hcCCCCCC
Confidence 31 34678999999999887 799999998754221 1334445567889999998853211111 23457899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEe
Q 006571 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (640)
Q Consensus 298 GGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (640)
||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ ++|||++||++. .+.++||++++|++|++++.
T Consensus 159 ~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~ 236 (260)
T PRK10744 159 GGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ-DYTVVIVTHNMQ-QAARCSDYTAFMYLGELIEF 236 (260)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999964 789999999975 46788999999999999999
Q ss_pred cChHHHH
Q 006571 378 GKASEAM 384 (640)
Q Consensus 378 G~~~~~~ 384 (640)
|+++++.
T Consensus 237 g~~~~~~ 243 (260)
T PRK10744 237 GNTDTIF 243 (260)
T ss_pred CCHHHHH
Confidence 9988864
No 151
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-43 Score=359.61 Aligned_cols=223 Identities=25% Similarity=0.412 Sum_probs=184.8
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-CCcccEEEECCEeCCh--
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-PTVGGSITYNDHPYSK-- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~-~~~~G~I~~~G~~~~~-- 225 (640)
.++++||++.| +++.+|+|+||++++||+++|+||||||||||+++|+|...+ ++.+|+|.++|+++..
T Consensus 2 ~~~~~~l~~~~--------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~ 73 (246)
T PRK14269 2 IAKTTNLNLFY--------GKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQD 73 (246)
T ss_pred ceeeeeeEEEE--------CCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCC
Confidence 47899999998 245799999999999999999999999999999999996532 2468999999998742
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHH
Q 006571 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (640)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (640)
..++.++|++|++.+|+ .||+||+.++...+.. .......++++.++++.++|.+...... +..+..||||||||
T Consensus 74 ~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qr 150 (246)
T PRK14269 74 VVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGM-IKNKDEEEALVVDCLQKVGLFEEVKDKL-KQNALALSGGQQQR 150 (246)
T ss_pred HHHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCc-ccChHHHHHHHHHHHHHcCCChhhhHHh-cCCcccCCHHHHHH
Confidence 34678999999999997 6999999987533210 0012334556788999999953221111 23457899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHH
Q 006571 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (640)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (640)
++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ |+|||++||++. .+.+.||++++|++|++++.|+++++
T Consensus 151 v~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 228 (246)
T PRK14269 151 LCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQ-QGKRVADYTAFFHLGELIEFGESKEF 228 (246)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHHhhCcEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999865 899999999975 46788999999999999999998886
Q ss_pred H
Q 006571 384 M 384 (640)
Q Consensus 384 ~ 384 (640)
.
T Consensus 229 ~ 229 (246)
T PRK14269 229 F 229 (246)
T ss_pred H
Confidence 4
No 152
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=2.9e-43 Score=363.51 Aligned_cols=221 Identities=27% Similarity=0.484 Sum_probs=185.8
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CcccEEEECCEeCCh--
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYSK-- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~-~~~G~I~~~G~~~~~-- 225 (640)
.|+++||+++| +++++|+|+||++++||+++|+||||||||||+++|+|...+. +.+|+|.++|.++..
T Consensus 4 ~l~~~nl~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~ 75 (262)
T PRK09984 4 IIRVEKLAKTF--------NQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREG 75 (262)
T ss_pred EEEEeeEEEEe--------CCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEeccccc
Confidence 69999999998 3467999999999999999999999999999999999965321 236999999988632
Q ss_pred -------hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCC-----CccHHHHHHHHHHHHHHcCCCccccccccCccC
Q 006571 226 -------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN-----TLTKQQKEKRAIDVINELGLERCQDTMIGGSFV 293 (640)
Q Consensus 226 -------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~ 293 (640)
..++.++|++|++.+++.+||.||+.++.....+. ....++.+.++.++++.+||.+..+.. +
T Consensus 76 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~ 150 (262)
T PRK09984 76 RLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQR-----V 150 (262)
T ss_pred ccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCC-----c
Confidence 23567999999999999999999998764211000 011233456788999999998766654 4
Q ss_pred CcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCcHHHhccCEEEEEcCC
Q 006571 294 RGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKG 372 (640)
Q Consensus 294 ~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~tH~~~~~i~~~~D~i~vL~~G 372 (640)
..|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++. .+.+.||+|++|++|
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~-~~~~~~d~i~~l~~g 229 (262)
T PRK09984 151 STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD-YALRYCERIVALRQG 229 (262)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECC
Confidence 68999999999999999999999999999999999999999999999986 4899999999975 467889999999999
Q ss_pred eEEEecChHHH
Q 006571 373 SLLYFGKASEA 383 (640)
Q Consensus 373 ~iv~~G~~~~~ 383 (640)
++++.|+++++
T Consensus 230 ~i~~~g~~~~~ 240 (262)
T PRK09984 230 HVFYDGSSQQF 240 (262)
T ss_pred EEEEeCCHHHh
Confidence 99999998764
No 153
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-44 Score=391.00 Aligned_cols=216 Identities=32% Similarity=0.536 Sum_probs=184.5
Q ss_pred CeeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC--
Q 006571 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-- 224 (640)
Q Consensus 147 ~~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~-- 224 (640)
+..++.+|++|.|+ +++++++|+|+++++|+.+||+|+||||||||+++|+|... +++|+|.+||.+..
T Consensus 318 ~~ei~~~~l~~~y~-------~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~--~~~G~I~vng~~l~~l 388 (559)
T COG4988 318 PIEISLENLSFRYP-------DGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLA--PTQGEIRVNGIDLRDL 388 (559)
T ss_pred CceeeecceEEecC-------CCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCC--CCCceEEECCcccccc
Confidence 44566779999983 23389999999999999999999999999999999999654 46899999999875
Q ss_pred --hhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCC------CccccccccCccCCcC
Q 006571 225 --KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL------ERCQDTMIGGSFVRGV 296 (640)
Q Consensus 225 --~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL------~~~~~t~vg~~~~~~L 296 (640)
..+|++++||+|+|.+|+. |++|||.++.. ..++++ +.++++..|| +++.|+.+|+. .++|
T Consensus 389 ~~~~~~k~i~~v~Q~p~lf~g-TireNi~l~~~-----~~s~e~----i~~al~~a~l~~~v~~p~GLdt~ige~-G~~L 457 (559)
T COG4988 389 SPEAWRKQISWVSQNPYLFAG-TIRENILLARP-----DASDEE----IIAALDQAGLLEFVPKPDGLDTVIGEG-GAGL 457 (559)
T ss_pred CHHHHHhHeeeeCCCCccccc-cHHHHhhccCC-----cCCHHH----HHHHHHHhcHHHhhcCCCcccchhccC-CCCC
Confidence 3689999999999999986 99999998732 123333 3334443333 56778888864 5789
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEE
Q 006571 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (640)
Q Consensus 297 SGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (640)
||||+|||++||||+.+++++++||||++||.++++.|.+.|.++++ ++|||++||++.. ...+|+|++|++|++++
T Consensus 458 SgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~-~ktvl~itHrl~~--~~~~D~I~vld~G~l~~ 534 (559)
T COG4988 458 SGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK-QKTVLVITHRLED--AADADRIVVLDNGRLVE 534 (559)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh-CCeEEEEEcChHH--HhcCCEEEEecCCceec
Confidence 99999999999999999999999999999999999999999999987 5999999999763 57799999999999999
Q ss_pred ecChHHHHH
Q 006571 377 FGKASEAMA 385 (640)
Q Consensus 377 ~G~~~~~~~ 385 (640)
.|+|+++.+
T Consensus 535 ~g~~~~L~~ 543 (559)
T COG4988 535 QGTHEELSE 543 (559)
T ss_pred cCCHHHHhh
Confidence 999999864
No 154
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=3.1e-43 Score=364.04 Aligned_cols=226 Identities=23% Similarity=0.427 Sum_probs=186.6
Q ss_pred eEEEEeEEEEEeecc-ccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 006571 149 YLKFTDVTYKVILKG-MTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~-~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (640)
+|+++||+++|.... ....+++.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~ 79 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK--PAQGTVSFRGQDLYQLD 79 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEccccC
Confidence 489999999983210 000124679999999999999999999999999999999999643 568999999998742
Q ss_pred -----hccCcEEEEccCC--CCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCccCCcCC
Q 006571 226 -----SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVS 297 (640)
Q Consensus 226 -----~~~~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LS 297 (640)
.+++.|+||+|++ .+++.+||+||+.+..... .........+++.++++.+||. +..+. .+..||
T Consensus 80 ~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~~LS 152 (265)
T TIGR02769 80 RKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHL--TSLDESEQKARIAELLDMVGLRSEDADK-----LPRQLS 152 (265)
T ss_pred HHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCCChhhhhC-----ChhhCC
Confidence 1356799999997 4677899999998764321 1123334556788999999995 44554 346899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEE
Q 006571 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (640)
Q Consensus 298 GGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (640)
||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++. .+.++||++++|++|++++
T Consensus 153 gGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~ 231 (265)
T TIGR02769 153 GGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQRVAVMDKGQIVE 231 (265)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999999999999865 899999999975 4667899999999999999
Q ss_pred ecChHHHH
Q 006571 377 FGKASEAM 384 (640)
Q Consensus 377 ~G~~~~~~ 384 (640)
.|+++++.
T Consensus 232 ~g~~~~~~ 239 (265)
T TIGR02769 232 ECDVAQLL 239 (265)
T ss_pred ECCHHHHc
Confidence 99998875
No 155
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.2e-43 Score=363.25 Aligned_cols=216 Identities=31% Similarity=0.547 Sum_probs=185.7
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (640)
|+++||+++|. +.+++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 2 l~~~~l~~~~~-------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~~~~~ 72 (275)
T PRK13639 2 LETRDLKYSYP-------DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILK--PTSGEVLIKGEPIKYDKKS 72 (275)
T ss_pred EEEEEEEEEeC-------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEECccccch
Confidence 78999999982 23469999999999999999999999999999999999653 568999999998731
Q ss_pred --hccCcEEEEccCC--CCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHH
Q 006571 226 --SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (640)
Q Consensus 226 --~~~~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 301 (640)
.+++.|+|++|++ .+++ .||.||+.++.... .....+..+++.++++.+||.+..++. +..||||||
T Consensus 73 ~~~~~~~i~~v~q~~~~~~~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LS~Gq~ 143 (275)
T PRK13639 73 LLEVRKTVGIVFQNPDDQLFA-PTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKP-----PHHLSGGQK 143 (275)
T ss_pred HHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCC-----hhhCCHHHH
Confidence 2467899999997 3454 69999998864321 233445566788999999998766654 468999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChH
Q 006571 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (640)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (640)
||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.++||++++|++|++++.|+++
T Consensus 144 qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~ 222 (275)
T PRK13639 144 KRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD-LVPVYADKVYVMSDGKIIKEGTPK 222 (275)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999999877999999999965 467789999999999999999999
Q ss_pred HHH
Q 006571 382 EAM 384 (640)
Q Consensus 382 ~~~ 384 (640)
++.
T Consensus 223 ~~~ 225 (275)
T PRK13639 223 EVF 225 (275)
T ss_pred HHh
Confidence 875
No 156
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.1e-43 Score=362.84 Aligned_cols=223 Identities=23% Similarity=0.399 Sum_probs=185.3
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---CcccEEEECCEeCCh
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYSK 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~---~~~G~I~~~G~~~~~ 225 (640)
.|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|....+ +.+|+|+++|+++..
T Consensus 19 ~l~~~nl~~~~--------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~ 90 (267)
T PRK14235 19 KMRARDVSVFY--------GEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYD 90 (267)
T ss_pred eEEEEeEEEEE--------CCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcc
Confidence 69999999998 2457999999999999999999999999999999999965421 368999999998742
Q ss_pred ------hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHH
Q 006571 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (640)
Q Consensus 226 ------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (640)
.+++.++||+|++.+++. ||.||+.++...+.. .....+..+++.++++.+||.+...... +..+..||||
T Consensus 91 ~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgG 167 (267)
T PRK14235 91 PRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGL-ARSKAELDEIVETSLRKAGLWEEVKDRL-HEPGTGLSGG 167 (267)
T ss_pred cccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCchhhhHHh-hCCcccCCHH
Confidence 346779999999999975 999999987543210 0123344566788999999964211111 2345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecC
Q 006571 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (640)
Q Consensus 300 qrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (640)
||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++. .+...||++++|++|++++.|+
T Consensus 168 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~-~~~~~~d~v~~l~~G~i~~~g~ 245 (267)
T PRK14235 168 QQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQ-QAARVSQRTAFFHLGNLVEVGD 245 (267)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHH-HHHhhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999975 789999999975 4678899999999999999999
Q ss_pred hHHHH
Q 006571 380 ASEAM 384 (640)
Q Consensus 380 ~~~~~ 384 (640)
++++.
T Consensus 246 ~~~~~ 250 (267)
T PRK14235 246 TEKMF 250 (267)
T ss_pred HHHHH
Confidence 88864
No 157
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=1.7e-43 Score=353.19 Aligned_cols=206 Identities=30% Similarity=0.539 Sum_probs=173.1
Q ss_pred EEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----h
Q 006571 151 KFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----S 226 (640)
Q Consensus 151 ~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~ 226 (640)
+++||+++|. ...+.+|+|+||+|++|++++|+||||||||||+++|+|.+. +.+|+|.++|+++.. .
T Consensus 1 ~~~~l~~~~~------~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~ 72 (211)
T cd03225 1 ELKNLSFSYP------DGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG--PTSGEVLVDGKDLTKLSLKE 72 (211)
T ss_pred CceeEEEecC------CCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEcccCCHHH
Confidence 3688999882 112579999999999999999999999999999999999653 568999999998742 3
Q ss_pred ccCcEEEEccCCC-CCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHH
Q 006571 227 LKSKIGFVTQDDV-LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (640)
Q Consensus 227 ~~~~i~yV~Q~~~-l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (640)
.++.++|++|++. .++.+||+||+.++.... ........+++.++++.++|.+..++. +..|||||||||+
T Consensus 73 ~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~ 144 (211)
T cd03225 73 LRRKVGLVFQNPDDQFFGPTVEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDRS-----PFTLSGGQKQRVA 144 (211)
T ss_pred HHhhceEEecChhhhcCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhcCC-----cccCCHHHHHHHH
Confidence 4678999999974 355789999998865432 123344456788899999997665543 4689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCe
Q 006571 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (640)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~ 373 (640)
|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++..+||+|++|++|+
T Consensus 145 laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 145 IAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADRVIVLEDGK 211 (211)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCCC
Confidence 999999999999999999999999999999999999877999999999975 5677899999999985
No 158
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=2.4e-43 Score=356.83 Aligned_cols=212 Identities=25% Similarity=0.402 Sum_probs=179.3
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (640)
|+++||++.| +++++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 1 l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~ 70 (230)
T TIGR03410 1 LEVSNLNVYY--------GQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP--VKSGSIRLDGEDITKLPPH 70 (230)
T ss_pred CEEEeEEEEe--------CCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECCCCCHH
Confidence 4789999998 34579999999999999999999999999999999999653 468999999998742
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcC-CCccccccccCccCCcCCHHHHHH
Q 006571 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-LERCQDTMIGGSFVRGVSGGERKR 303 (640)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~t~vg~~~~~~LSGGqrqR 303 (640)
..++.++|++|++.+++.+|+.||+.++..... .. ..+.++++++.++ +.+..++ .+..||||||||
T Consensus 71 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~---~~~~~~~~l~~~~~l~~~~~~-----~~~~LS~G~~qr 139 (230)
T TIGR03410 71 ERARAGIAYVPQGREIFPRLTVEENLLTGLAALP---RR---SRKIPDEIYELFPVLKEMLGR-----RGGDLSGGQQQQ 139 (230)
T ss_pred HHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcC---cc---hHHHHHHHHHHHHhHHHHhhC-----ChhhCCHHHHHH
Confidence 135679999999999999999999998754321 11 1233466677665 4444444 457899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHH
Q 006571 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (640)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (640)
++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++..+||+|++|++|++++.|++++
T Consensus 140 v~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~g~i~~~~~~~~ 218 (230)
T TIGR03410 140 LAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADRYYVMERGRVVASGAGDE 218 (230)
T ss_pred HHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999999874 899999999975 4667899999999999999999887
Q ss_pred H
Q 006571 383 A 383 (640)
Q Consensus 383 ~ 383 (640)
+
T Consensus 219 ~ 219 (230)
T TIGR03410 219 L 219 (230)
T ss_pred c
Confidence 6
No 159
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=1.1e-43 Score=355.28 Aligned_cols=210 Identities=27% Similarity=0.498 Sum_probs=173.6
Q ss_pred EEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCc
Q 006571 151 KFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSK 230 (640)
Q Consensus 151 ~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~ 230 (640)
+++||+++| +++++|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++. ..++.
T Consensus 1 ~~~~l~~~~--------~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~-~~~~~ 69 (213)
T cd03235 1 EVEDLTVSY--------GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK--PTSGSIRVFGKPLE-KERKR 69 (213)
T ss_pred CcccceeEE--------CCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCccHH-HHHhh
Confidence 367899988 23569999999999999999999999999999999999653 46899999998764 45678
Q ss_pred EEEEccCCCCC--CCCCHHHHHHHHHhccCC-CCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHH
Q 006571 231 IGFVTQDDVLF--PHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (640)
Q Consensus 231 i~yV~Q~~~l~--~~lTV~Enl~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (640)
++||+|++.++ ..+||+||+.++...... .....+...++++++++.++|++..++. +..||||||||++||
T Consensus 70 i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la 144 (213)
T cd03235 70 IGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQ-----IGELSGGQQQRVLLA 144 (213)
T ss_pred eEEeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCC-----cccCCHHHHHHHHHH
Confidence 99999998763 237999999986432110 0011223455688899999997665543 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEec
Q 006571 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (640)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (640)
|||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++| +++.|
T Consensus 145 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 145 RALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLG-LVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEcCc-EeecC
Confidence 9999999999999999999999999999999999877899999999975 467889999999876 66654
No 160
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.7e-43 Score=363.87 Aligned_cols=219 Identities=27% Similarity=0.481 Sum_probs=187.0
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (640)
.+|+++|++++|. .+++++|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 6 ~~l~~~nl~~~~~------~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~i~~~~ 77 (271)
T PRK13632 6 VMIKVENVSFSYP------NSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLK--PQSGEIKIDGITISKEN 77 (271)
T ss_pred eEEEEEeEEEEcC------CCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEecCcCC
Confidence 3699999999982 124579999999999999999999999999999999999653 568999999998742
Q ss_pred --hccCcEEEEccCCC-CCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHH
Q 006571 226 --SLKSKIGFVTQDDV-LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (640)
Q Consensus 226 --~~~~~i~yV~Q~~~-l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (640)
.+++.++|++|++. .++.+||+||+.++.... ....++..+++.++++.+||.+..++. +..|||||||
T Consensus 78 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~q 149 (271)
T PRK13632 78 LKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKE-----PQNLSGGQKQ 149 (271)
T ss_pred HHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCC-----cccCCHHHHH
Confidence 35678999999974 566789999999865322 123444556788999999998766654 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChH
Q 006571 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (640)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (640)
|++|||||+.+|++|||||||+|||+.++..+++.|++++++ ++|||+++|++.. + ..||++++|++|++++.|+++
T Consensus 150 rl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~-~~~d~v~~l~~G~i~~~g~~~ 227 (271)
T PRK13632 150 RVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDE-A-ILADKVIVFSEGKLIAQGKPK 227 (271)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhH-H-hhCCEEEEEECCEEEEecCHH
Confidence 999999999999999999999999999999999999999866 5899999999864 4 479999999999999999988
Q ss_pred HHH
Q 006571 382 EAM 384 (640)
Q Consensus 382 ~~~ 384 (640)
++.
T Consensus 228 ~~~ 230 (271)
T PRK13632 228 EIL 230 (271)
T ss_pred HHh
Confidence 764
No 161
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.4e-43 Score=364.56 Aligned_cols=222 Identities=23% Similarity=0.415 Sum_probs=187.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
+|+++||+++|.... +...+++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 4 ~l~~~~l~~~~~~~~--~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~i~g~~i~~~~~ 79 (280)
T PRK13633 4 MIKCKNVSYKYESNE--ESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI--PSEGKVYVDGLDTSDEEN 79 (280)
T ss_pred eEEEeeeEEEcCCCC--CCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEecccccc
Confidence 699999999983210 0013579999999999999999999999999999999999653 568999999998742
Q ss_pred --hccCcEEEEccCCC--CCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHH
Q 006571 226 --SLKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (640)
Q Consensus 226 --~~~~~i~yV~Q~~~--l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 301 (640)
..++.+|||+|++. ++ ..||.||+.|+.... ..+..+.+++++++++.+||.+..++. +..||||||
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~-~~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LS~G~~ 150 (280)
T PRK13633 80 LWDIRNKAGMVFQNPDNQIV-ATIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHA-----PHLLSGGQK 150 (280)
T ss_pred HHHHhhheEEEecChhhhhc-cccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCC-----cccCCHHHH
Confidence 34678999999974 45 469999999875432 234455567789999999998776654 468999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecCh
Q 006571 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (640)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (640)
||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++.. +. .||++++|++|++++.|++
T Consensus 151 qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~-~~-~~d~v~~l~~G~i~~~g~~ 228 (280)
T PRK13633 151 QRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEE-AV-EADRIIVMDSGKVVMEGTP 228 (280)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHH-Hh-cCCEEEEEECCEEEEecCH
Confidence 9999999999999999999999999999999999999999764 9999999999874 54 4999999999999999999
Q ss_pred HHHHH
Q 006571 381 SEAMA 385 (640)
Q Consensus 381 ~~~~~ 385 (640)
+++..
T Consensus 229 ~~~~~ 233 (280)
T PRK13633 229 KEIFK 233 (280)
T ss_pred HHHhc
Confidence 98753
No 162
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.5e-43 Score=358.31 Aligned_cols=223 Identities=22% Similarity=0.408 Sum_probs=185.9
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-C--CcccEEEECCEeCCh
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYSK 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~-~--~~~G~I~~~G~~~~~ 225 (640)
.|+++|++++| +++.+|+|+||+|++||+++|+||||||||||+++|+|.... | +.+|+|.++|+++..
T Consensus 4 ~l~~~nl~~~~--------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~ 75 (252)
T PRK14256 4 KVKLEQLNVHF--------GKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYD 75 (252)
T ss_pred EEEEEEEEEEe--------CCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEccc
Confidence 58999999998 245799999999999999999999999999999999996531 2 258999999998742
Q ss_pred ------hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHH
Q 006571 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (640)
Q Consensus 226 ------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (640)
.+++.++|++|++.+++.+|++||+.++.... ......+.++++.++++.+++.+...... +..+..||||
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G 152 (252)
T PRK14256 76 RGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLN--GRVNRSEADEIVESSLKRVALWDEVKDRL-KSNAMELSGG 152 (252)
T ss_pred ccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCchhhhHHh-hCCcCcCCHH
Confidence 34678999999999999899999998765322 11223344556788899999854221111 1345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecC
Q 006571 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (640)
Q Consensus 300 qrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (640)
||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. .+.++||++++|++|++++.|+
T Consensus 153 ~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~~~ 230 (252)
T PRK14256 153 QQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQ-QAARVSDYTAFFYMGDLVECGE 230 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHH-HHHhhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999976 689999999975 4678899999999999999999
Q ss_pred hHHHH
Q 006571 380 ASEAM 384 (640)
Q Consensus 380 ~~~~~ 384 (640)
++++.
T Consensus 231 ~~~~~ 235 (252)
T PRK14256 231 TKKIF 235 (252)
T ss_pred HHHHH
Confidence 88864
No 163
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2e-43 Score=347.62 Aligned_cols=216 Identities=26% Similarity=0.460 Sum_probs=184.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
+|+++||+..| +..++|++|||++++||+++|+||||+|||||||+|+|... +.+|+|.++|+|++.
T Consensus 3 mL~v~~l~~~Y--------G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~--~~~G~I~~~G~dit~~p~ 72 (237)
T COG0410 3 MLEVENLSAGY--------GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR--PRSGRIIFDGEDITGLPP 72 (237)
T ss_pred ceeEEeEeecc--------cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeeEEECCeecCCCCH
Confidence 68999999988 56789999999999999999999999999999999999653 458999999999863
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcC-CCccccccccCccCCcCCHHHHH
Q 006571 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-LERCQDTMIGGSFVRGVSGGERK 302 (640)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~t~vg~~~~~~LSGGqrq 302 (640)
..|.-|+||||...+||.|||+|||..++..+.. +...+...+++.+.|- |.+..+..- ..|||||||
T Consensus 73 ~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~a-----G~LSGGEQQ 143 (237)
T COG0410 73 HERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQRA-----GTLSGGEQQ 143 (237)
T ss_pred HHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCcc-----cCCChHHHH
Confidence 3467899999999999999999999998654321 1112222666777663 455555443 479999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChH
Q 006571 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (640)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (640)
.++|||||+.+|++|+|||||.||-|.-..+|.+.+++++++ |.||+++-++.. .+.+++||.+||.+|+|++.|+.+
T Consensus 144 MLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~-~Al~iaDr~yvle~Griv~~G~~~ 222 (237)
T COG0410 144 MLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNAR-FALEIADRGYVLENGRIVLSGTAA 222 (237)
T ss_pred HHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHH-HHHHhhCEEEEEeCCEEEEecCHH
Confidence 999999999999999999999999999999999999999976 779999988854 577899999999999999999999
Q ss_pred HHH
Q 006571 382 EAM 384 (640)
Q Consensus 382 ~~~ 384 (640)
++.
T Consensus 223 eL~ 225 (237)
T COG0410 223 ELL 225 (237)
T ss_pred HHh
Confidence 985
No 164
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.9e-43 Score=364.24 Aligned_cols=220 Identities=27% Similarity=0.460 Sum_probs=187.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCc--ccEEEECCEeCCh-
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTV--GGSITYNDHPYSK- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~--~G~I~~~G~~~~~- 225 (640)
.|+++|+++.|. ...+++|+||||+|++||+++|+||||||||||+++|+|.+. |.. +|+|.++|.++..
T Consensus 5 ~l~i~~l~~~~~------~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~-p~~g~~G~i~i~g~~~~~~ 77 (282)
T PRK13640 5 IVEFKHVSFTYP------DSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLL-PDDNPNSKITVDGITLTAK 77 (282)
T ss_pred eEEEEEEEEEcC------CCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC-CCCCCCcEEEECCEECCcC
Confidence 699999999982 123469999999999999999999999999999999999653 332 2999999998752
Q ss_pred ---hccCcEEEEccCCC-CCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHH
Q 006571 226 ---SLKSKIGFVTQDDV-LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (640)
Q Consensus 226 ---~~~~~i~yV~Q~~~-l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 301 (640)
..++++|||+|++. +++.+||.|||.|..... ..+.++..+++.++++.+||.+..++ .++.||||||
T Consensus 78 ~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~-----~~~~LS~G~~ 149 (282)
T PRK13640 78 TVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDS-----EPANLSGGQK 149 (282)
T ss_pred CHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcC-----CcccCCHHHH
Confidence 34678999999974 566789999999865322 23455566778999999999876664 4579999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecCh
Q 006571 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (640)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (640)
||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++.. + ..||++++|++|++++.|++
T Consensus 150 qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~-~-~~~d~i~~l~~G~i~~~g~~ 227 (282)
T PRK13640 150 QRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDE-A-NMADQVLVLDDGKLLAQGSP 227 (282)
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999865 8999999999764 4 57999999999999999999
Q ss_pred HHHHH
Q 006571 381 SEAMA 385 (640)
Q Consensus 381 ~~~~~ 385 (640)
+++..
T Consensus 228 ~~~~~ 232 (282)
T PRK13640 228 VEIFS 232 (282)
T ss_pred HHHhc
Confidence 88753
No 165
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.9e-43 Score=363.31 Aligned_cols=220 Identities=25% Similarity=0.415 Sum_probs=185.9
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 11 ~l~i~~l~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~ 80 (265)
T PRK10575 11 TFALRNVSFRV--------PGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP--PSEGEILLDAQPLESWSS 80 (265)
T ss_pred eEEEeeEEEEE--------CCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEehhhCCH
Confidence 69999999998 24579999999999999999999999999999999999543 568999999998642
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCC-CccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHH
Q 006571 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN-TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (640)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (640)
.+++.++|++|++.+++.+||.||+.++....... ........+++.++++.++|.+..++. +..||||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qr 155 (265)
T PRK10575 81 KAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRL-----VDSLSGGERQR 155 (265)
T ss_pred HHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCC-----cccCCHHHHHH
Confidence 34667999999988888899999998753211000 011123345688899999997666654 46899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHH
Q 006571 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (640)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (640)
|+|||||+.+|+||||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||+|++|++|++++.|++++
T Consensus 156 v~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~i~~l~~G~i~~~~~~~~ 234 (265)
T PRK10575 156 AWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDYLVALRGGEMIAQGTPAE 234 (265)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEecCHHH
Confidence 99999999999999999999999999999999999999765 899999999975 4778899999999999999999887
Q ss_pred HH
Q 006571 383 AM 384 (640)
Q Consensus 383 ~~ 384 (640)
+.
T Consensus 235 ~~ 236 (265)
T PRK10575 235 LM 236 (265)
T ss_pred hc
Confidence 64
No 166
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=4.6e-43 Score=353.32 Aligned_cols=210 Identities=29% Similarity=0.493 Sum_probs=182.0
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccC
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~ 229 (640)
|+++||+++| +++++|+|+||++++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++....++
T Consensus 1 l~l~~v~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~~~~~~~~~~~ 70 (223)
T TIGR03740 1 LETKNLSKRF--------GKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR--PTSGEIIFDGHPWTRKDLH 70 (223)
T ss_pred CEEEeEEEEE--------CCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEeccccccc
Confidence 4789999988 24579999999999999999999999999999999999653 5689999999987543345
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHH
Q 006571 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (640)
Q Consensus 230 ~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~a 309 (640)
.++|++|++.+++.+|++||+.+....+. .. .+++.++++.+||.+..+.. +..||||||||++||||
T Consensus 71 ~~~~~~q~~~~~~~~t~~~~~~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~~rv~lara 138 (223)
T TIGR03740 71 KIGSLIESPPLYENLTARENLKVHTTLLG---LP----DSRIDEVLNIVDLTNTGKKK-----AKQFSLGMKQRLGIAIA 138 (223)
T ss_pred cEEEEcCCCCccccCCHHHHHHHHHHHcC---CC----HHHHHHHHHHcCCcHHHhhh-----HhhCCHHHHHHHHHHHH
Confidence 79999999999988999999988654321 11 23577889999998766653 46899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHH
Q 006571 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (640)
Q Consensus 310 L~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (640)
|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.||++++|++|++++.|++.+
T Consensus 139 l~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 139 LLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILS-EVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred HhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEeCCEEEEecChhh
Confidence 99999999999999999999999999999999877899999999975 4678899999999999999998753
No 167
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=4.3e-43 Score=361.04 Aligned_cols=219 Identities=26% Similarity=0.450 Sum_probs=184.8
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (640)
|+++|+++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 2 l~~~~l~~~~--------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~ 71 (256)
T TIGR03873 2 LRLSRVSWSA--------GGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR--PDAGTVDLAGVDLHGLSRR 71 (256)
T ss_pred ceEEeEEEEE--------CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEEcccCCHH
Confidence 6899999998 34579999999999999999999999999999999999653 468999999998742
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCC-CCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHH
Q 006571 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (640)
Q Consensus 226 ~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (640)
..++.++|++|++.+++.+||+||+.++...... ......+..+++.++++.++|.+..++. +..||||||||+
T Consensus 72 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl 146 (256)
T TIGR03873 72 ARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRD-----MSTLSGGERQRV 146 (256)
T ss_pred HHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCC-----cccCCHHHHHHH
Confidence 3456799999998877789999999885311000 0011123345688899999997666653 468999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHH
Q 006571 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (640)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (640)
+|||||+.+|+++||||||+|||+.++..+.+.|++++++|.|||+++|++. .+.++||+|++|++|++++.|+++++.
T Consensus 147 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 225 (256)
T TIGR03873 147 HVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLN-LAASYCDHVVVLDGGRVVAAGPPREVL 225 (256)
T ss_pred HHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCEEEecCHHHhh
Confidence 9999999999999999999999999999999999999877899999999976 467899999999999999999988763
No 168
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-43 Score=363.34 Aligned_cols=220 Identities=23% Similarity=0.395 Sum_probs=186.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++||+++| +++.+|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 7 ~l~i~~l~~~~--------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~ 76 (265)
T PRK10253 7 RLRGEQLTLGY--------GKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT--PAHGHVWLDGEHIQHYAS 76 (265)
T ss_pred EEEEEEEEEEE--------CCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCcEEEECCEEhhhCCH
Confidence 69999999998 34579999999999999999999999999999999999653 468999999998742
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCC-CccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHH
Q 006571 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN-TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (640)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (640)
..++.++|++|++.+++.+||+||+.++.....+. ....+...+++.++++.+||.+..++ .+..||||||||
T Consensus 77 ~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~Gq~qr 151 (265)
T PRK10253 77 KEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQ-----SVDTLSGGQRQR 151 (265)
T ss_pred HHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcC-----CcccCChHHHHH
Confidence 34567999999999998899999998753111000 00112334567889999999765554 457899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHH
Q 006571 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (640)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (640)
++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||+++|++. .+.++||++++|++|++++.|++++
T Consensus 152 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 230 (265)
T PRK10253 152 AWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLIALREGKIVAQGAPKE 230 (265)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999864 899999999975 4778999999999999999999888
Q ss_pred HH
Q 006571 383 AM 384 (640)
Q Consensus 383 ~~ 384 (640)
+.
T Consensus 231 ~~ 232 (265)
T PRK10253 231 IV 232 (265)
T ss_pred Hh
Confidence 65
No 169
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.4e-43 Score=359.85 Aligned_cols=222 Identities=24% Similarity=0.421 Sum_probs=184.8
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-CC--cccEEEECCEeCCh
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-PT--VGGSITYNDHPYSK 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~-~~--~~G~I~~~G~~~~~ 225 (640)
.|+++||++.| +++++|+|+||+|++||+++|+||||||||||+++|+|.... |. .+|+|.++|+++..
T Consensus 12 ~l~i~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~ 83 (259)
T PRK14274 12 VYQINGMNLWY--------GQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILK 83 (259)
T ss_pred eEEEeeEEEEE--------CCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccc
Confidence 69999999998 345799999999999999999999999999999999996532 21 58999999998741
Q ss_pred ------hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHH
Q 006571 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (640)
Q Consensus 226 ------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (640)
..++.++|++|++.+++. ||+||+.+...... ...+++..++++++++.+++.+...... +..+.+||||
T Consensus 84 ~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l-~~~~~~LS~G 159 (259)
T PRK14274 84 GKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHG--TKNKKKLQEIVEKSLKDVALWDEVKDRL-HTQALSLSGG 159 (259)
T ss_pred cccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhhh-hCCcccCCHH
Confidence 346789999999999985 99999998653321 1123444566788899988854211111 2345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecC
Q 006571 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (640)
Q Consensus 300 qrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (640)
||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++.+ ++|||++||++. .+.+.||++++|++|+++..|+
T Consensus 160 q~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~G~i~~~g~ 237 (259)
T PRK14274 160 QQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQ-QAARVSDQTAFFYMGELVECND 237 (259)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999999865 789999999975 4778899999999999999999
Q ss_pred hHHHH
Q 006571 380 ASEAM 384 (640)
Q Consensus 380 ~~~~~ 384 (640)
++++.
T Consensus 238 ~~~~~ 242 (259)
T PRK14274 238 TNKMF 242 (259)
T ss_pred HHHHh
Confidence 98864
No 170
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.5e-43 Score=359.64 Aligned_cols=223 Identities=22% Similarity=0.392 Sum_probs=185.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-C--CcccEEEECCEeCC-
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYS- 224 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~-~--~~~G~I~~~G~~~~- 224 (640)
.|+++||+++| +++++|+|+||+|++||+++|+||||||||||+++|+|...+ | +.+|+|.++|+++.
T Consensus 4 ~l~i~~v~~~~--------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~ 75 (258)
T PRK14241 4 RIDVKDLNIYY--------GSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYG 75 (258)
T ss_pred cEEEeeEEEEE--------CCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccc
Confidence 58999999998 245799999999999999999999999999999999996542 1 25899999999863
Q ss_pred -----hhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHH
Q 006571 225 -----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (640)
Q Consensus 225 -----~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (640)
..+++.++|++|++.+++.+||+||+.++...+. .....+.++++.++++.+||.+...... +..+.+||||
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G 152 (258)
T PRK14241 76 PGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDRL-DKPGGGLSGG 152 (258)
T ss_pred cccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhHh-hCCcccCCHH
Confidence 1346789999999999999999999998754321 1123444567888899998842111111 2345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEc------CCe
Q 006571 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG------KGS 373 (640)
Q Consensus 300 qrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~------~G~ 373 (640)
|||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+.||+|++|+ +|+
T Consensus 153 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~-~~~~~~d~i~~l~~~~~~~~g~ 230 (258)
T PRK14241 153 QQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQ-QAARVSDQTAFFNLEATGKPGR 230 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEecccCCCCce
Confidence 99999999999999999999999999999999999999999964 689999999975 4678899999996 799
Q ss_pred EEEecChHHHH
Q 006571 374 LLYFGKASEAM 384 (640)
Q Consensus 374 iv~~G~~~~~~ 384 (640)
+++.|+++++.
T Consensus 231 i~~~~~~~~~~ 241 (258)
T PRK14241 231 LVEIDDTEKIF 241 (258)
T ss_pred EEecCCHHHHH
Confidence 99999998874
No 171
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=5e-45 Score=389.66 Aligned_cols=360 Identities=26% Similarity=0.345 Sum_probs=275.4
Q ss_pred HHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchhhhHhh
Q 006571 14 KSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGAALSR 93 (640)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 93 (640)
-+|.....+..++.+.-+.|+|+|-+-.+.+.++..+.-....+..+.-....|.+.-.|+.+-+.+|.--+-.|+-|+-
T Consensus 190 A~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi 269 (580)
T COG4618 190 ASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGALSRALRMALQSAVLGLGAWLVI 269 (580)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcceeeEE
Confidence 35556666667777777788999999888888888877766666655545555666566888888888888889999999
Q ss_pred hhhhhhhhhhccc---cCCCCccccc-cC-CC-----CCCCCCccccccccCCCCCCCCCCCCCeeEEEEeEEEEEeecc
Q 006571 94 ASSASLGLSFSFT---GFTMPPDEIA-DS-KP-----FSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKG 163 (640)
Q Consensus 94 ~~~~~~g~~~~~~---~~~~~~~~~~-~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vs~~~~~~~ 163 (640)
.+.++.|++..=+ +..+.+.+.. .. +. .++.++.+-+...+...+. +..|.....|.++++++.
T Consensus 270 ~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~~-m~LP~P~g~L~Ve~l~~~----- 343 (580)
T COG4618 270 KGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAER-MPLPAPQGALSVERLTAA----- 343 (580)
T ss_pred cCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCC-CCCCCCCceeeEeeeeec-----
Confidence 9988888876533 2122111111 00 00 1222222223222222222 234444567999999983
Q ss_pred ccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hccCcEEEEccCCC
Q 006571 164 MTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDV 239 (640)
Q Consensus 164 ~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~i~yV~Q~~~ 239 (640)
++..++++|+|+||.+.+||.+||+||||||||||.|+|.|.. ++.+|.|.+||-++++ .+-++|||.||+-.
T Consensus 344 -PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w--~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVe 420 (580)
T COG4618 344 -PPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIW--PPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVE 420 (580)
T ss_pred -CCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHccc--ccCCCcEEecchhhhcCCHHHhccccCcCcccce
Confidence 3456789999999999999999999999999999999999954 3569999999998853 46788999999999
Q ss_pred CCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEE
Q 006571 240 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFL 319 (640)
Q Consensus 240 l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlL 319 (640)
||+. ||.|||.=......++.+-++.+.+.++|++- .|++++||.||+.. ..||||||||+++||||..||.+++|
T Consensus 421 LF~G-TIaeNIaRf~~~~d~~kIieAA~lAgvHelIl--~lP~GYdT~iG~~G-~~LSgGQRQRIaLARAlYG~P~lvVL 496 (580)
T COG4618 421 LFDG-TIAENIARFGEEADPEKVIEAARLAGVHELIL--RLPQGYDTRIGEGG-ATLSGGQRQRIALARALYGDPFLVVL 496 (580)
T ss_pred ecCC-cHHHHHHhccccCCHHHHHHHHHHcChHHHHH--hCcCCccCccCCCC-CCCCchHHHHHHHHHHHcCCCcEEEe
Confidence 9987 99999973221111111223344556788874 56999999999754 67999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHHHHH
Q 006571 320 DEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFS 388 (640)
Q Consensus 320 DEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~~f~ 388 (640)
|||-|+||.+.+..+.+.|.+++++|.|+|+++|+|+ +...+|+|++|++|++-.+|+.+|++....
T Consensus 497 DEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs--~L~~~Dkilvl~~G~~~~FG~r~eVLa~~~ 563 (580)
T COG4618 497 DEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS--ALASVDKILVLQDGRIAAFGPREEVLAKVL 563 (580)
T ss_pred cCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHH--HHhhcceeeeecCChHHhcCCHHHHHHHhc
Confidence 9999999999999999999999999999999999987 578899999999999999999999987654
No 172
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.4e-43 Score=357.66 Aligned_cols=222 Identities=28% Similarity=0.443 Sum_probs=183.8
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC-CCC--cccEEEECCEeCCh
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLM-EPT--VGGSITYNDHPYSK 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~-~~~--~~G~I~~~G~~~~~ 225 (640)
.|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|... .|. .+|+|.++|+++..
T Consensus 5 ~l~~~~l~~~~--------~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~ 76 (252)
T PRK14239 5 ILQVSDLSVYY--------NKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYS 76 (252)
T ss_pred eEEEEeeEEEE--------CCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcC
Confidence 58999999998 34579999999999999999999999999999999999642 231 48999999998731
Q ss_pred ------hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHH
Q 006571 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (640)
Q Consensus 226 ------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (640)
.+++.++||+|++.+++ +||+||+.++...+ + ........+++.++++.+++.+..... -+..+..||||
T Consensus 77 ~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~G 152 (252)
T PRK14239 77 PRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLK-G-IKDKQVLDEAVEKSLKGASIWDEVKDR-LHDSALGLSGG 152 (252)
T ss_pred cccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHc-C-CCcHHHHHHHHHHHHHHcCCchhHHHH-HhcCcccCCHH
Confidence 34678999999999997 79999999875432 1 112233456678888888875321111 12345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecC
Q 006571 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (640)
Q Consensus 300 qrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (640)
||||++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ ++|||++||++. ++.+.||+|++|++|++++.|+
T Consensus 153 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~ 230 (252)
T PRK14239 153 QQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQ-QASRISDRTGFFLDGDLIEYND 230 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHH-HHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999865 689999999975 4778899999999999999999
Q ss_pred hHHHH
Q 006571 380 ASEAM 384 (640)
Q Consensus 380 ~~~~~ 384 (640)
++++.
T Consensus 231 ~~~~~ 235 (252)
T PRK14239 231 TKQMF 235 (252)
T ss_pred HHHHH
Confidence 98874
No 173
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-42 Score=360.61 Aligned_cols=224 Identities=24% Similarity=0.380 Sum_probs=187.7
Q ss_pred CeeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC---CCcccEEEECCEeC
Q 006571 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME---PTVGGSITYNDHPY 223 (640)
Q Consensus 147 ~~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~---~~~~G~I~~~G~~~ 223 (640)
...|+++||+++| +++++|+|+||+|++||+++|+||||||||||+++|+|.... .+.+|+|.++|+++
T Consensus 18 ~~~l~~~nl~~~~--------~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~ 89 (267)
T PRK14237 18 EIALSTKDLHVYY--------GKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDI 89 (267)
T ss_pred CeEEEEeeEEEEE--------CCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEc
Confidence 4479999999998 346799999999999999999999999999999999996542 14689999999987
Q ss_pred Ch------hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCC
Q 006571 224 SK------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (640)
Q Consensus 224 ~~------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LS 297 (640)
.. ..++.++||+|++.+++ .||+||+.++.... + ...+.+.++++.++++.++|.+..+... +..+..||
T Consensus 90 ~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~i~~~~-~~~~~~LS 165 (267)
T PRK14237 90 NRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERA-G-VKDKKVLDEIVETSLKQAALWDQVKDDL-HKSALTLS 165 (267)
T ss_pred ccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhc-C-CCCHHHHHHHHHHHHHHcCCCchhhhhh-cCCcccCC
Confidence 42 24678999999999887 59999999875321 1 1233445567888999999864322222 24567899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEe
Q 006571 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (640)
Q Consensus 298 GGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (640)
||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++.+ +.|||++||++. ++.++||++++|++|++++.
T Consensus 166 ~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~ 243 (267)
T PRK14237 166 GGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKK-NYTIIIVTHNMQ-QAARASDYTAFFYLGDLIEY 243 (267)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhcCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999964 789999999976 47789999999999999999
Q ss_pred cChHHHH
Q 006571 378 GKASEAM 384 (640)
Q Consensus 378 G~~~~~~ 384 (640)
|+++++.
T Consensus 244 g~~~~~~ 250 (267)
T PRK14237 244 DKTRNIF 250 (267)
T ss_pred CCHHHHh
Confidence 9998874
No 174
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=7.1e-43 Score=355.50 Aligned_cols=216 Identities=27% Similarity=0.501 Sum_probs=187.1
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--hc
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SL 227 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--~~ 227 (640)
|+++|++++| +++++|+|+||++.+||+++|+||||||||||+++|+|.+. +.+|+|.++|.++.. ..
T Consensus 1 i~i~~l~~~~--------~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~i~g~~~~~~~~~ 70 (237)
T TIGR00968 1 IEIANISKRF--------GSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQ--PDSGRIRLNGQDATRVHAR 70 (237)
T ss_pred CEEEEEEEEE--------CCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCcCChh
Confidence 4789999998 24579999999999999999999999999999999999653 468999999998753 33
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHH
Q 006571 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (640)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (640)
++.++|++|++.+|+.+|+.||+.+....+ ........+.+.++++.+++.+..++. +..|||||+||++||
T Consensus 71 ~~~i~~~~q~~~~~~~~t~~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS~G~~qrl~la 142 (237)
T TIGR00968 71 DRKIGFVFQHYALFKHLTVRDNIAFGLEIR---KHPKAKIKARVEELLELVQLEGLGDRY-----PNQLSGGQRQRVALA 142 (237)
T ss_pred hcCEEEEecChhhccCCcHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCC-----hhhCCHHHHHHHHHH
Confidence 567999999999999899999999875432 122334456778999999997666653 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHH
Q 006571 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (640)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (640)
|+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|+++++.
T Consensus 143 ral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~~ 219 (237)
T TIGR00968 143 RALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVMSNGKIEQIGSPDEVY 219 (237)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEEECCEEEEecCHHHHH
Confidence 9999999999999999999999999999999998875 899999999975 467889999999999999999988874
No 175
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.9e-43 Score=361.65 Aligned_cols=226 Identities=26% Similarity=0.457 Sum_probs=193.6
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---CcccEEEECCEeCC--
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYS-- 224 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~---~~~G~I~~~G~~~~-- 224 (640)
|+++|++.+|... .+..++++||||+|++||++||+|.|||||||+.+.|.|.+..+ ..+|+|.++|+++.
T Consensus 2 L~v~nL~v~f~~~----~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l 77 (316)
T COG0444 2 LEVKNLSVSFPTD----AGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSL 77 (316)
T ss_pred ceEeeeEEEEecC----CccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccC
Confidence 6899999998532 23467999999999999999999999999999999999977533 26799999999763
Q ss_pred -h----hcc-CcEEEEccCC--CCCCCCCHHHHHHHHHhccCCCCc-cHHHHHHHHHHHHHHcCCCccccccccCccCCc
Q 006571 225 -K----SLK-SKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTL-TKQQKEKRAIDVINELGLERCQDTMIGGSFVRG 295 (640)
Q Consensus 225 -~----~~~-~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~-~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~ 295 (640)
+ .+| +.|+||||++ .|.|.+||.+.+.-...... .. .+++..+++.++|+.+||++-.. +.+.++.+
T Consensus 78 ~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~--~~~~~~ea~~~a~~~L~~Vgi~~~~~--~~~~YPhe 153 (316)
T COG0444 78 SEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHG--KGLSKKEAKERAIELLELVGIPDPER--RLKSYPHE 153 (316)
T ss_pred CHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhh--cchhhHHHHHHHHHHHHHcCCCCHHH--HHhhCCcc
Confidence 2 223 5799999996 68899999999987665432 12 45667788999999999986422 33568999
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCcHHHhccCEEEEEcCCeE
Q 006571 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (640)
Q Consensus 296 LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~i 374 (640)
|||||||||.||.||+.+|++||.||||++||...+.+|+++|+++.+ .|.++|+||||+. .+.++||||+||+.|+|
T Consensus 154 lSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~-vva~~aDri~VMYaG~i 232 (316)
T COG0444 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLG-VVAEIADRVAVMYAGRI 232 (316)
T ss_pred cCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceEEEEECcEE
Confidence 999999999999999999999999999999999999999999999986 5999999999976 47899999999999999
Q ss_pred EEecChHHHH
Q 006571 375 LYFGKASEAM 384 (640)
Q Consensus 375 v~~G~~~~~~ 384 (640)
|+.|+.+++.
T Consensus 233 VE~g~~~~i~ 242 (316)
T COG0444 233 VEEGPVEEIF 242 (316)
T ss_pred EEeCCHHHHh
Confidence 9999999875
No 176
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.1e-43 Score=356.84 Aligned_cols=212 Identities=31% Similarity=0.484 Sum_probs=182.1
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++|++++| +++.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~--------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~ 72 (241)
T PRK14250 3 EIEFKEVSYSS--------FGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID--PTEGSILIDGVDIKTIDV 72 (241)
T ss_pred eEEEEeEEEEe--------CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEhhhcCh
Confidence 48999999998 34579999999999999999999999999999999999653 568999999998742
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCccCCcCCHHHHHH
Q 006571 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKR 303 (640)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqrqR 303 (640)
..++.++|++|++.+++ .||+||+.+....+ . ....++.++++.++|+ +..++ .+..||||||||
T Consensus 73 ~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~----~~~~~~~~~l~~~~l~~~~~~~-----~~~~LS~G~~qr 139 (241)
T PRK14250 73 IDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK---G----EKNVDVEYYLSIVGLNKEYATR-----DVKNLSGGEAQR 139 (241)
T ss_pred HHhhhcEEEEecCchhch-hhHHHHHhcchhhc---C----cHHHHHHHHHHHcCCCHHHhhC-----CcccCCHHHHHH
Confidence 34678999999999987 69999998754321 1 1234677889999996 34443 457899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHH
Q 006571 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (640)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (640)
++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+.+.||+|++|++|++++.|++++
T Consensus 140 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (241)
T PRK14250 140 VSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGDYTAFLNKGILVEYAKTYD 218 (241)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCCEEEEEeCCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999864 899999999975 4677899999999999999999988
Q ss_pred HH
Q 006571 383 AM 384 (640)
Q Consensus 383 ~~ 384 (640)
+.
T Consensus 219 ~~ 220 (241)
T PRK14250 219 FF 220 (241)
T ss_pred Hh
Confidence 64
No 177
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=9.9e-43 Score=351.91 Aligned_cols=214 Identities=31% Similarity=0.468 Sum_probs=179.5
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (640)
..|+++||+++|..+ ...+++|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 5 ~~l~~~~l~~~~~~~----~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~~~~~~ 78 (228)
T PRK10584 5 NIVEVHHLKKSVGQG----EHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDD--GSSGEVSLVGQPLHQMD 78 (228)
T ss_pred ceEEEeeeEEEccCC----CcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCeeEEECCEEcccCC
Confidence 369999999998310 011359999999999999999999999999999999999643 468999999998742
Q ss_pred --h---c-cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHH
Q 006571 226 --S---L-KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (640)
Q Consensus 226 --~---~-~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (640)
. . ++.++|++|++.+++.+||.||+.+....+ .....+..+++.++++.++|.+..+.. +..||||
T Consensus 79 ~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G 150 (228)
T PRK10584 79 EEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR---GESSRQSRNGAKALLEQLGLGKRLDHL-----PAQLSGG 150 (228)
T ss_pred HHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCC-----hhhCCHH
Confidence 1 2 257999999999999999999999865332 123344566788999999998766543 4689999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEe
Q 006571 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (640)
Q Consensus 300 qrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (640)
||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||+++|++. .+ +.||++++|++|++++.
T Consensus 151 e~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 151 EQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEec
Confidence 999999999999999999999999999999999999999999764 899999999976 34 56999999999999753
No 178
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-42 Score=355.90 Aligned_cols=222 Identities=24% Similarity=0.433 Sum_probs=183.9
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-C--CcccEEEECCEeCCh
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYSK 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~-~--~~~G~I~~~G~~~~~ 225 (640)
.|+++||++.| +++++|+|+||+|++||+++|+||||||||||+++|+|.... | +.+|+|.++|+++..
T Consensus 3 ~l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~ 74 (250)
T PRK14240 3 KISVKDLDLFY--------GDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYK 74 (250)
T ss_pred eEEEEEEEEEE--------CCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 58999999998 245799999999999999999999999999999999996432 2 158999999998742
Q ss_pred ------hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHH
Q 006571 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (640)
Q Consensus 226 ------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (640)
..++.++||+|++.+++ +|++||+.++..... ....++..+++.++++.+++.+...... +..+..||||
T Consensus 75 ~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~G 150 (250)
T PRK14240 75 SDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHG--IKDKKKLDEIVEKSLKGAALWDEVKDRL-KKSALGLSGG 150 (250)
T ss_pred cccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhHHHH-hcCCCCCCHH
Confidence 34678999999999887 899999998754321 1123344567788888888753211111 2345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecC
Q 006571 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (640)
Q Consensus 300 qrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (640)
||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||++||++. .+.+.||++++|++|++++.|+
T Consensus 151 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~v~~l~~G~i~~~~~ 228 (250)
T PRK14240 151 QQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTHNMQ-QASRISDKTAFFLNGEIVEFGD 228 (250)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCHH-HHHhhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999864 889999999965 5778899999999999999999
Q ss_pred hHHHH
Q 006571 380 ASEAM 384 (640)
Q Consensus 380 ~~~~~ 384 (640)
++++.
T Consensus 229 ~~~~~ 233 (250)
T PRK14240 229 TVDLF 233 (250)
T ss_pred HHHHH
Confidence 88864
No 179
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-42 Score=352.86 Aligned_cols=216 Identities=28% Similarity=0.471 Sum_probs=187.1
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--hc
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SL 227 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--~~ 227 (640)
|+++|++++| +++++|+|+|++|++|++++|+||||||||||+++|+|... +.+|+|.++|+++.. ..
T Consensus 1 l~~~~l~~~~--------~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~--~~~G~i~~~g~~~~~~~~~ 70 (232)
T cd03300 1 IELENVSKFY--------GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET--PTSGEILLDGKDITNLPPH 70 (232)
T ss_pred CEEEeEEEEe--------CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCcCChh
Confidence 4689999998 34579999999999999999999999999999999999653 468999999998753 23
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHH
Q 006571 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (640)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (640)
++.++|++|++.+++.+|+.||+.+....+. .......++++++++.+||.+..++. +..||||||||++||
T Consensus 71 ~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS~G~~qrl~la 142 (232)
T cd03300 71 KRPVNTVFQNYALFPHLTVFENIAFGLRLKK---LPKAEIKERVAEALDLVQLEGYANRK-----PSQLSGGQQQRVAIA 142 (232)
T ss_pred hcceEEEecccccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHH
Confidence 5689999999999988999999998754331 23344456778899999998766654 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHH
Q 006571 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (640)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (640)
|+|+.+|+++||||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.||++++|++|++++.|+++++.
T Consensus 143 ral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~i~~l~~G~~~~~~~~~~~~ 219 (232)
T cd03300 143 RALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE-EALTMSDRIAVMNKGKIQQIGTPEEIY 219 (232)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEecCCHHHHH
Confidence 9999999999999999999999999999999999864 899999999975 467889999999999999999987764
No 180
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-43 Score=359.27 Aligned_cols=226 Identities=27% Similarity=0.445 Sum_probs=197.7
Q ss_pred eeEEEEeEEEEEeecc----------c------cccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC
Q 006571 148 IYLKFTDVTYKVILKG----------M------TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT 211 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~----------~------~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~ 211 (640)
..|+++||++-+..+. . .+.+-..-++|+||+|+.||++.|||-||||||||+++|.+ +.+|
T Consensus 3 ~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~Nr-Liep- 80 (386)
T COG4175 3 VKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNR-LIEP- 80 (386)
T ss_pred ceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhc-cCCC-
Confidence 3588999987664210 0 01122346899999999999999999999999999999995 5554
Q ss_pred cccEEEECCEeCCh-------hc-cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCcc
Q 006571 212 VGGSITYNDHPYSK-------SL-KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC 283 (640)
Q Consensus 212 ~~G~I~~~G~~~~~-------~~-~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 283 (640)
+.|+|+++|.++.+ .+ |+++++|||...|+|+.||.||..|+...+ .++++++++++.++|+.+||...
T Consensus 81 t~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~---Gv~~~er~~~a~~~l~~VgL~~~ 157 (386)
T COG4175 81 TRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGY 157 (386)
T ss_pred CCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeec---CCCHHHHHHHHHHHHHHcCchhh
Confidence 58999999998742 23 567999999999999999999999998775 57899999999999999999988
Q ss_pred ccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhc
Q 006571 284 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHK 362 (640)
Q Consensus 284 ~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~ 362 (640)
.+. ++++|||||||||.|||||+.+|+|||+|||+|+|||--+.++.+.|.+|.++ ++|||++|||+. +.+++
T Consensus 158 ~~~-----yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLd-EAlri 231 (386)
T COG4175 158 ADK-----YPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLD-EALRI 231 (386)
T ss_pred hhc-----CcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHHhc
Confidence 875 56899999999999999999999999999999999999999999999999754 899999999976 57899
Q ss_pred cCEEEEEcCCeEEEecChHHHH
Q 006571 363 FDKLILLGKGSLLYFGKASEAM 384 (640)
Q Consensus 363 ~D~i~vL~~G~iv~~G~~~~~~ 384 (640)
-|||.+|++|+|+..|+|+|++
T Consensus 232 G~rIaimkdG~ivQ~Gtp~eIl 253 (386)
T COG4175 232 GDRIAIMKDGEIVQVGTPEEIL 253 (386)
T ss_pred cceEEEecCCeEEEeCCHHHHH
Confidence 9999999999999999999987
No 181
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=2.5e-44 Score=443.11 Aligned_cols=347 Identities=20% Similarity=0.262 Sum_probs=234.3
Q ss_pred hHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchhh
Q 006571 10 LARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGA 89 (640)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 89 (640)
..+..++..++..+.++|++++.+||++|+++..+.++|.+........+.+.....+.+.........-..+..++.|+
T Consensus 224 ~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~G~ 303 (1466)
T PTZ00265 224 NKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLHIGMINGFILASYAFGFWYGT 303 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666688999999999999999999999999999987666555444332222222211111111122334456777
Q ss_pred hHhhhhh--------hhhh--------hhhccccC--------CCCccccccCCCCCCCCCccccccccCCCCCCCCCCC
Q 006571 90 ALSRASS--------ASLG--------LSFSFTGF--------TMPPDEIADSKPFSDDDIPEDIEAGTRERPKFQTEPT 145 (640)
Q Consensus 90 ~~~~~~~--------~~~g--------~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (640)
.++..+. .+.| .+.++..+ .+..+..+..+.+...+..+.++.... . ...+.
T Consensus 304 ~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ii~~~~~~~~~~~---~-~~~~~ 379 (1466)
T PTZ00265 304 RIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIINRKPLVENNDD---G-KKLKD 379 (1466)
T ss_pred HHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC---C-ccCCC
Confidence 7666541 1222 22211110 011112222222222221111111000 0 00111
Q ss_pred CCeeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEE-CCEeCC
Q 006571 146 LPIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITY-NDHPYS 224 (640)
Q Consensus 146 ~~~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~-~G~~~~ 224 (640)
. ..|+++||+|+|+. ++++++|+|+||+|++||++||+||||||||||+++|+|. ++ +.+|+|++ ||.++.
T Consensus 380 ~-~~I~~~nVsf~Y~~-----~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl-~~-p~~G~I~i~~g~~i~ 451 (1466)
T PTZ00265 380 I-KKIQFKNVRFHYDT-----RKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERL-YD-PTEGDIIINDSHNLK 451 (1466)
T ss_pred C-CcEEEEEEEEEcCC-----CCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHh-cc-CCCCeEEEeCCcchh
Confidence 1 26999999999831 1235799999999999999999999999999999999984 44 45899999 567764
Q ss_pred ----hhccCcEEEEccCCCCCCCCCHHHHHHHHHhccC----------CC-----------------------------C
Q 006571 225 ----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRL----------PN-----------------------------T 261 (640)
Q Consensus 225 ----~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~----------~~-----------------------------~ 261 (640)
+.+|++||||+|++.+|+. ||+|||.++..... +. .
T Consensus 452 ~~~~~~lr~~Ig~V~Q~~~LF~~-TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (1466)
T PTZ00265 452 DINLKWWRSKIGVVSQDPLLFSN-SIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTD 530 (1466)
T ss_pred hCCHHHHHHhccEecccccchhc-cHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccc
Confidence 2468889999999999975 99999999742100 00 0
Q ss_pred c---------cHHHHHHHHHHHHHHc-------CCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 006571 262 L---------TKQQKEKRAIDVINEL-------GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 325 (640)
Q Consensus 262 ~---------~~~~~~~~v~~~l~~l-------gL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsg 325 (640)
. .....++.+.++++.+ .|++.+||.+|.. ...||||||||++|||||+++|+|||||||||+
T Consensus 531 ~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~-g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSa 609 (1466)
T PTZ00265 531 SNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSN-ASKLSGGQKQRISIARAIIRNPKILILDEATSS 609 (1466)
T ss_pred hhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCC-CCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccc
Confidence 0 0001123455555544 4567788888764 567999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCcHHHhccCEEEEEcCC
Q 006571 326 LDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKG 372 (640)
Q Consensus 326 LD~~s~~~i~~~L~~l~~-~g~TvI~~tH~~~~~i~~~~D~i~vL~~G 372 (640)
||+.++..|.+.|+++.+ +|+|+|+++|+++. + +.||+|++|++|
T Consensus 610 LD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~-i-~~aD~Iivl~~g 655 (1466)
T PTZ00265 610 LDNKSEYLVQKTINNLKGNENRITIIIAHRLST-I-RYANTIFVLSNR 655 (1466)
T ss_pred cCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHH-H-HhCCEEEEEeCC
Confidence 999999999999999975 58999999999864 4 789999999986
No 182
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-42 Score=364.56 Aligned_cols=221 Identities=24% Similarity=0.405 Sum_probs=183.3
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC----
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~---- 224 (640)
.|+++||+++|..+. ...+++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++.
T Consensus 6 ~l~i~nl~~~~~~~~---~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~ 80 (289)
T PRK13645 6 DIILDNVSYTYAKKT---PFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII--SETGQTIVGDYAIPANLK 80 (289)
T ss_pred eEEEEEEEEEeCCCC---ccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEcccccc
Confidence 589999999983110 001359999999999999999999999999999999999653 56899999998863
Q ss_pred -----hhccCcEEEEccCCC--CCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCccCCcC
Q 006571 225 -----KSLKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGV 296 (640)
Q Consensus 225 -----~~~~~~i~yV~Q~~~--l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~L 296 (640)
..+++.|+||+|++. +++ .||+||+.++.... ....++..+++.++++.++|+ +..++ .+..|
T Consensus 81 ~~~~~~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~-----~~~~L 151 (289)
T PRK13645 81 KIKEVKRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKR-----SPFEL 151 (289)
T ss_pred ccccHHHHhccEEEEEeCcchhhhh-hHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcC-----ChhhC
Confidence 134678999999973 454 59999999865322 123444456678899999995 44444 35689
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEE
Q 006571 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (640)
Q Consensus 297 SGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv 375 (640)
|||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.++||++++|++|+++
T Consensus 152 S~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~i~~l~~G~i~ 230 (289)
T PRK13645 152 SGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVMHEGKVI 230 (289)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999764 899999999975 477899999999999999
Q ss_pred EecChHHHH
Q 006571 376 YFGKASEAM 384 (640)
Q Consensus 376 ~~G~~~~~~ 384 (640)
+.|+++++.
T Consensus 231 ~~g~~~~~~ 239 (289)
T PRK13645 231 SIGSPFEIF 239 (289)
T ss_pred EeCCHHHHh
Confidence 999988864
No 183
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-42 Score=360.63 Aligned_cols=219 Identities=24% Similarity=0.419 Sum_probs=186.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++||+++|.. ...+++|+|+||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|+++..
T Consensus 4 ~l~~~~l~~~~~~-----~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i~~~~~ 76 (277)
T PRK13642 4 ILEVENLVFKYEK-----ESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE--EFEGKVKIDGELLTAENV 76 (277)
T ss_pred eEEEEEEEEEcCC-----CCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCCEEEECCEECCcCCH
Confidence 6899999999831 123469999999999999999999999999999999999653 568999999998752
Q ss_pred -hccCcEEEEccCCC-CCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHH
Q 006571 226 -SLKSKIGFVTQDDV-LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (640)
Q Consensus 226 -~~~~~i~yV~Q~~~-l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (640)
..++.++|++|++. .++..||.|||.++.... ....++..++++++++.+||.+..++ .+..||||||||
T Consensus 77 ~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qr 148 (277)
T PRK13642 77 WNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTR-----EPARLSGGQKQR 148 (277)
T ss_pred HHHhcceEEEEECHHHhhccCCHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhC-----CcccCCHHHHHH
Confidence 35678999999974 566789999999865422 22344455678899999999876665 357899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHH
Q 006571 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (640)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (640)
++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++.. + ..||+|++|++|++++.|++++
T Consensus 149 v~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~-~-~~~d~i~~l~~G~i~~~g~~~~ 226 (277)
T PRK13642 149 VAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDE-A-ASSDRILVMKAGEIIKEAAPSE 226 (277)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-H-HhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999875 9999999999764 4 4699999999999999999988
Q ss_pred HH
Q 006571 383 AM 384 (640)
Q Consensus 383 ~~ 384 (640)
+.
T Consensus 227 ~~ 228 (277)
T PRK13642 227 LF 228 (277)
T ss_pred Hh
Confidence 75
No 184
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.8e-44 Score=384.71 Aligned_cols=215 Identities=32% Similarity=0.561 Sum_probs=185.0
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC----
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~---- 224 (640)
.++++||+|+|+ ..+.++|+|+||++++||.+||+|+||||||||+.+|+|.. + +++|+|.+||.++.
T Consensus 336 ~l~~~~vsF~y~------~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~-~-~~~G~i~~~g~~~~~l~~ 407 (573)
T COG4987 336 ALELRNVSFTYP------GQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAW-D-PQQGSITLNGVEIASLDE 407 (573)
T ss_pred eeeeccceeecC------CCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhcc-C-CCCCeeeECCcChhhCCh
Confidence 799999999994 24557999999999999999999999999999999999854 3 46899999999874
Q ss_pred hhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCC-------CccccccccCccCCcCC
Q 006571 225 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-------ERCQDTMIGGSFVRGVS 297 (640)
Q Consensus 225 ~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~t~vg~~~~~~LS 297 (640)
+.+|+.|++++|...+|.+ |+++||.++. | +.++++ +.++++.+|| +++.||.+|+. .+.||
T Consensus 408 ~~~~e~i~vl~Qr~hlF~~-Tlr~NL~lA~----~-~AsDEe----l~~aL~qvgL~~l~~~~p~gl~t~lge~-G~~LS 476 (573)
T COG4987 408 QALRETISVLTQRVHLFSG-TLRDNLRLAN----P-DASDEE----LWAALQQVGLEKLLESAPDGLNTWLGEG-GRRLS 476 (573)
T ss_pred hhHHHHHhhhccchHHHHH-HHHHHHhhcC----C-CCCHHH----HHHHHHHcCHHHHHHhChhhhhchhccC-CCcCC
Confidence 2478899999999999976 9999999863 2 233333 4455555554 44677778754 46799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEe
Q 006571 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (640)
Q Consensus 298 GGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (640)
||||||++|||+|++|.++++|||||.|||+.++.++++.|.+.++ |+|+|++||++.. .+.||||++|++|++++.
T Consensus 477 GGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~-~kTll~vTHrL~~--le~~drIivl~~Gkiie~ 553 (573)
T COG4987 477 GGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE-GKTLLMVTHRLRG--LERMDRIIVLDNGKIIEE 553 (573)
T ss_pred chHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc-CCeEEEEeccccc--HhhcCEEEEEECCeeeec
Confidence 9999999999999999999999999999999999999999998775 9999999999875 578999999999999999
Q ss_pred cChHHHHH
Q 006571 378 GKASEAMA 385 (640)
Q Consensus 378 G~~~~~~~ 385 (640)
|++.+++.
T Consensus 554 G~~~~Ll~ 561 (573)
T COG4987 554 GTHAELLA 561 (573)
T ss_pred CCHHhhhc
Confidence 99999875
No 185
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-42 Score=355.26 Aligned_cols=223 Identities=24% Similarity=0.387 Sum_probs=185.0
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-C--CcccEEEECCEeCC
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYS 224 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~-~--~~~G~I~~~G~~~~ 224 (640)
+.|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|.... + +.+|+|.++|.++.
T Consensus 3 ~~l~~~~l~~~~--------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~ 74 (251)
T PRK14270 3 IKMESKNLNLWY--------GEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIY 74 (251)
T ss_pred cEEEEEEeEEEE--------CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecc
Confidence 368999999998 245799999999999999999999999999999999996532 1 25899999999874
Q ss_pred h------hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCH
Q 006571 225 K------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (640)
Q Consensus 225 ~------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (640)
. ..++.++|++|++.+++ +|++||+.+...... .....+..+++.++++.++|.+..... -+..+..|||
T Consensus 75 ~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~ 150 (251)
T PRK14270 75 DKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHG--IKDKKELDKIVEWALKKAALWDEVKDD-LKKSALKLSG 150 (251)
T ss_pred cccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCchhhhhH-hhCCcccCCH
Confidence 2 34677999999999997 899999998754321 112334455678889999875321111 1234578999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEec
Q 006571 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (640)
Q Consensus 299 GqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (640)
|||||++|||+|+.+|+||||||||+|||+.++..+.+.|+++.+ ++|||++||++. .+.+.||++++|++|++++.|
T Consensus 151 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~d~v~~l~~G~i~~~~ 228 (251)
T PRK14270 151 GQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQ-QASRVSDYTAFFLMGDLIEFN 228 (251)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHH-HHHHhcCEEEEEECCeEEEeC
Confidence 999999999999999999999999999999999999999999876 689999999975 577889999999999999999
Q ss_pred ChHHHH
Q 006571 379 KASEAM 384 (640)
Q Consensus 379 ~~~~~~ 384 (640)
+++++.
T Consensus 229 ~~~~~~ 234 (251)
T PRK14270 229 KTEKIF 234 (251)
T ss_pred CHHHHh
Confidence 998874
No 186
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.8e-43 Score=348.21 Aligned_cols=208 Identities=25% Similarity=0.443 Sum_probs=175.6
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--hc
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SL 227 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--~~ 227 (640)
|+++|++++|. ++. .|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. ..
T Consensus 1 i~~~~l~~~~~--------~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~--~~~G~i~~~g~~~~~~~~~ 68 (211)
T cd03298 1 VRLDKIRFSYG--------EQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFET--PQSGRVLINGVDVTAAPPA 68 (211)
T ss_pred CEEEeEEEEeC--------CEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcCcCCHh
Confidence 47899999982 222 39999999999999999999999999999999653 568999999998743 23
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHH
Q 006571 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (640)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (640)
++.++|++|++.+++.+||+||+.++..... .. ....++++.++++.+||.+..++. +..||||||||++||
T Consensus 69 ~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~ia 140 (211)
T cd03298 69 DRPVSMLFQENNLFAHLTVEQNVGLGLSPGL--KL-TAEDRQAIEVALARVGLAGLEKRL-----PGELSGGERQRVALA 140 (211)
T ss_pred HccEEEEecccccCCCCcHHHHHhccccccc--Cc-cHHHHHHHHHHHHHcCCHHHHhCC-----cccCCHHHHHHHHHH
Confidence 5679999999999999999999987643211 11 223455688999999998766654 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEec
Q 006571 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (640)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (640)
|||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.++||++++|++|++++.|
T Consensus 141 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 141 RVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHhhhCEEEEEECCEEeecC
Confidence 9999999999999999999999999999999999754 899999999965 466889999999999998764
No 187
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-42 Score=355.92 Aligned_cols=223 Identities=23% Similarity=0.392 Sum_probs=183.5
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-C--CcccEEEECCEeCCh
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYSK 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~-~--~~~G~I~~~G~~~~~ 225 (640)
.-+++||+++| +++++|+|+||+|++||+++|+||||||||||+++|+|.... + +.+|+|.++|+++..
T Consensus 5 ~~~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~ 76 (251)
T PRK14244 5 HASVKNLNLWY--------GSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYS 76 (251)
T ss_pred EEEeeeEEEEE--------CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHh
Confidence 35789999998 245799999999999999999999999999999999996531 2 358999999998632
Q ss_pred ------hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHH
Q 006571 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (640)
Q Consensus 226 ------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (640)
.+++.++||+|++.+++. ||+||+.+....+. ........++.+.++++.+||.+...+.+ +..+..||||
T Consensus 77 ~~~~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G 153 (251)
T PRK14244 77 VDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHG-LAKNKKKLDEIVEKSLTSVGLWEELGDRL-KDSAFELSGG 153 (251)
T ss_pred cccchHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHcCCCchhhhHh-hcChhhCCHH
Confidence 246789999999999986 99999998743321 11122334456788899999965322111 2345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecC
Q 006571 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (640)
Q Consensus 300 qrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (640)
||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++.+ |+|||++||++. .+.+.||+|++|++|++++.|+
T Consensus 154 q~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~~G~i~~~~~ 231 (251)
T PRK14244 154 QQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKK-NFTIIVVTHSMK-QAKKVSDRVAFFQSGRIVEYNT 231 (251)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHhhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999864 899999999975 4678899999999999999999
Q ss_pred hHHHH
Q 006571 380 ASEAM 384 (640)
Q Consensus 380 ~~~~~ 384 (640)
++++.
T Consensus 232 ~~~~~ 236 (251)
T PRK14244 232 TQEIF 236 (251)
T ss_pred HHHHh
Confidence 88764
No 188
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=1.1e-42 Score=375.31 Aligned_cols=206 Identities=24% Similarity=0.410 Sum_probs=180.4
Q ss_pred ccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCE----eCCh----h---cc-CcEEEEc
Q 006571 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH----PYSK----S---LK-SKIGFVT 235 (640)
Q Consensus 168 ~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~----~~~~----~---~~-~~i~yV~ 235 (640)
+...+|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|+++|+ ++.. . .| ++++||+
T Consensus 35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~--p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vf 112 (382)
T TIGR03415 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNP--VSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVF 112 (382)
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEE
Confidence 45679999999999999999999999999999999999653 56899999996 3321 1 22 5799999
Q ss_pred cCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCC
Q 006571 236 QDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPS 315 (640)
Q Consensus 236 Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~ 315 (640)
|++.++|.+||+||+.|+...+ ..++.+.++++.++++.+||.+..+.. +.+|||||||||+|||||+.+|+
T Consensus 113 Q~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~vgL~~~~~~~-----~~~LSgGq~QRV~LARALa~~P~ 184 (382)
T TIGR03415 113 QKFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELVGLAQWADKK-----PGELSGGMQQRVGLARAFAMDAD 184 (382)
T ss_pred CCCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999986542 234566677889999999998776654 46899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHH
Q 006571 316 LLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (640)
Q Consensus 316 iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (640)
||||||||+|||+.++..+.+.|+++.++ |+|||++||++. ++.++||+|++|++|+++..|+++++.
T Consensus 185 ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~~l~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 185 ILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EALKIGNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 99999999999999999999999999865 899999999975 577899999999999999999999875
No 189
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-42 Score=354.48 Aligned_cols=223 Identities=25% Similarity=0.378 Sum_probs=183.1
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC---cccEEEECCEeCCh
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT---VGGSITYNDHPYSK 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~---~~G~I~~~G~~~~~ 225 (640)
.|+++||+++| +++++|+|+||+|++||+++|+||||||||||+|+|+|.+.+.+ .+|+|.++|.++..
T Consensus 4 ~l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~ 75 (252)
T PRK14272 4 LLSAQDVNIYY--------GDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYG 75 (252)
T ss_pred EEEEeeeEEEE--------CCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEccc
Confidence 68999999998 34579999999999999999999999999999999999653212 37999999998742
Q ss_pred ------hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHH
Q 006571 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (640)
Q Consensus 226 ------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (640)
.+++.++|++|++.+++.+|+.||+.++..... ....++..+.+.+.++.+++.+..... .+..+..||||
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LS~G 152 (252)
T PRK14272 76 PRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAG--IRDRDHLMEVAERSLRGAALWDEVKDR-LKTPATGLSGG 152 (252)
T ss_pred CccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCcchhhhhh-hcCCcccCCHH
Confidence 346679999999999998999999987653221 112333445567777777664211111 12345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecC
Q 006571 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (640)
Q Consensus 300 qrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (640)
||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+.||++++|++|++++.|+
T Consensus 153 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~ 230 (252)
T PRK14272 153 QQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMH-QAARVSDTTSFFLVGDLVEHGP 230 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999865 799999999976 4677899999999999999999
Q ss_pred hHHHH
Q 006571 380 ASEAM 384 (640)
Q Consensus 380 ~~~~~ 384 (640)
++++.
T Consensus 231 ~~~~~ 235 (252)
T PRK14272 231 TDQLF 235 (252)
T ss_pred HHHHH
Confidence 98874
No 190
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-42 Score=351.47 Aligned_cols=214 Identities=26% Similarity=0.455 Sum_probs=182.0
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--hc
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SL 227 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--~~ 227 (640)
|+++||+++|. ++. .|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. ..
T Consensus 2 l~~~~l~~~~~--------~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~ 69 (232)
T PRK10771 2 LKLTDITWLYH--------HLP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLT--PASGSLTLNGQDHTTTPPS 69 (232)
T ss_pred eEEEEEEEEEC--------Ccc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCeecCcCChh
Confidence 78999999982 222 38999999999999999999999999999999643 568999999998753 23
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHH
Q 006571 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (640)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (640)
++.++|++|++.+++.+|+.||+.++..... .. .+...+++.++++.+||++..++. +..||||||||++||
T Consensus 70 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la 141 (232)
T PRK10771 70 RRPVSMLFQENNLFSHLTVAQNIGLGLNPGL--KL-NAAQREKLHAIARQMGIEDLLARL-----PGQLSGGQRQRVALA 141 (232)
T ss_pred hccEEEEecccccccCCcHHHHHhccccccc--CC-CHHHHHHHHHHHHHcCcHHHHhCC-----cccCCHHHHHHHHHH
Confidence 4679999999999999999999987532111 11 223456688999999998766654 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHH
Q 006571 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (640)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (640)
|+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.||++++|++|++++.|+++++.
T Consensus 142 ral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~i~~~g~~~~~~ 218 (232)
T PRK10771 142 RCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLVVADGRIAWDGPTDELL 218 (232)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999999999998764 899999999975 467889999999999999999988764
No 191
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-42 Score=367.77 Aligned_cols=224 Identities=21% Similarity=0.368 Sum_probs=187.9
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC---CCcccEEEECCEeCC
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME---PTVGGSITYNDHPYS 224 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~---~~~~G~I~~~G~~~~ 224 (640)
..|+++|++++|. .+.+++|+|+||+|++||++||+||||||||||+++|+|.... .+.+|+|.+||+++.
T Consensus 79 ~~i~~~nls~~y~------~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~ 152 (329)
T PRK14257 79 NVFEIRNFNFWYM------NRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTR 152 (329)
T ss_pred ceEEEEeeEEEec------CCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 4799999999983 1345799999999999999999999999999999999986531 135899999999985
Q ss_pred ------hhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCcc-HHHHHHHHHHHHHHcCCCccccccccCccCCcCC
Q 006571 225 ------KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLT-KQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (640)
Q Consensus 225 ------~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~-~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LS 297 (640)
..+++.++||||++.+|+ .|++|||.|+.... ... .+..++.+.++++.++|.+..++.++ ..+..||
T Consensus 153 ~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~---~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~-~~~~~LS 227 (329)
T PRK14257 153 SKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNN---GINDRKILEKIVEKSLKSAALWDEVKDDLD-KAGNALS 227 (329)
T ss_pred ccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhc---CCChHHHHHHHHHHHHHHcCCcchhhhhhh-CCcccCC
Confidence 245778999999999996 69999999875321 122 22334457788888888654444443 4567899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEe
Q 006571 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (640)
Q Consensus 298 GGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (640)
||||||++|||||+.+|+||||||||+|||+.+...+.+.|+++.+ ++|||++||++. .+.+.||||++|++|++++.
T Consensus 228 gGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~-~i~~~~Driivl~~G~i~e~ 305 (329)
T PRK14257 228 GGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMA-QAQRISDETVFFYQGWIEEA 305 (329)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999876 799999999975 46678999999999999999
Q ss_pred cChHHHH
Q 006571 378 GKASEAM 384 (640)
Q Consensus 378 G~~~~~~ 384 (640)
|+++++.
T Consensus 306 g~~~~l~ 312 (329)
T PRK14257 306 GETKTIF 312 (329)
T ss_pred CCHHHHh
Confidence 9999985
No 192
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-42 Score=354.35 Aligned_cols=222 Identities=24% Similarity=0.444 Sum_probs=184.8
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-C--CcccEEEECCEeCCh
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYSK 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~-~--~~~G~I~~~G~~~~~ 225 (640)
.|+++||++.| +++++|+|+||+|++||+++|+||||||||||+++|+|...+ | +.+|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~--------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~ 74 (250)
T PRK14262 3 IIEIENFSAYY--------GEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYD 74 (250)
T ss_pred eEEEEeeEEEe--------CCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccc
Confidence 58999999998 245799999999999999999999999999999999996532 1 268999999998742
Q ss_pred ------hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHH
Q 006571 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (640)
Q Consensus 226 ------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (640)
..++.++|++|++.+++ +||+||+.++..... .......++.+.+.++.+++.+..+.. .+..+.+||||
T Consensus 75 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~G 150 (250)
T PRK14262 75 PQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHG--VKSKHKLDRIVEESLKKAALWDEVKSE-LNKPGTRLSGG 150 (250)
T ss_pred chhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCchhHHH-HhCChhhcCHH
Confidence 34678999999999997 899999998754321 112333455678888888885422111 23456789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecC
Q 006571 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (640)
Q Consensus 300 qrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (640)
||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. .+.++||++++|++|+++..|+
T Consensus 151 q~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~-~~~~~~d~i~~l~~G~i~~~g~ 228 (250)
T PRK14262 151 QQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIG-QAIRIADYIAFMYRGELIEYGP 228 (250)
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecC
Confidence 99999999999999999999999999999999999999999875 789999999975 4678899999999999999999
Q ss_pred hHHHH
Q 006571 380 ASEAM 384 (640)
Q Consensus 380 ~~~~~ 384 (640)
++++.
T Consensus 229 ~~~~~ 233 (250)
T PRK14262 229 TREIV 233 (250)
T ss_pred HHHHH
Confidence 98875
No 193
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-42 Score=359.27 Aligned_cols=222 Identities=23% Similarity=0.394 Sum_probs=182.9
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC---CCcccEEEECCEeCC
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME---PTVGGSITYNDHPYS 224 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~---~~~~G~I~~~G~~~~ 224 (640)
..|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|.... .+++|+|.++|+++.
T Consensus 12 ~~l~i~nl~~~~--------~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~ 83 (269)
T PRK14259 12 IIISLQNVTISY--------GTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLY 83 (269)
T ss_pred ceEEEEeEEEEE--------CCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 479999999998 345799999999999999999999999999999999996431 146899999999863
Q ss_pred ------hhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCH
Q 006571 225 ------KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (640)
Q Consensus 225 ------~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (640)
..+++.++||+|++.+|+. ||+||+.+....+ .... ..++++.++++.+++....+.. -+..+..|||
T Consensus 84 ~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~---~~~~-~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LS~ 157 (269)
T PRK14259 84 DPRVDPVEVRRRIGMVFQQPNPFPK-SIYENIAFGARIN---GYTG-DMDELVERSLRKAAVWDECKDK-LNESGYSLSG 157 (269)
T ss_pred cccCCHHHHhhceEEEccCCccchh-hHHHHHhhhhhhc---CCcH-HHHHHHHHHHHHhCCcchhhhh-hCCCcccCCH
Confidence 2346779999999999984 9999999876432 1122 2345567788888774321111 1234578999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcC-------
Q 006571 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK------- 371 (640)
Q Consensus 299 GqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~------- 371 (640)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. .+.++||++++|++
T Consensus 158 G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~~~~~~~~ 235 (269)
T PRK14259 158 GQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQ-QAVRVSDMTAFFNAEEVEGGS 235 (269)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEecccccccc
Confidence 999999999999999999999999999999999999999999864 789999999975 57789999999996
Q ss_pred ----CeEEEecChHHHHH
Q 006571 372 ----GSLLYFGKASEAMA 385 (640)
Q Consensus 372 ----G~iv~~G~~~~~~~ 385 (640)
|++++.|+++++..
T Consensus 236 ~g~~g~~~~~~~~~~~~~ 253 (269)
T PRK14259 236 GGKVGYLVEFNETKKIFN 253 (269)
T ss_pred ccccceEEEeCCHHHHHh
Confidence 67999999988753
No 194
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=1.2e-42 Score=373.81 Aligned_cols=209 Identities=29% Similarity=0.467 Sum_probs=180.7
Q ss_pred eEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--------
Q 006571 154 DVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-------- 225 (640)
Q Consensus 154 ~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-------- 225 (640)
||+++| +++. + |+||+|++||+++|+|||||||||||++|+|... +.+|+|.++|+++..
T Consensus 4 ~l~~~~--------~~~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~i~~~~~~~~~~ 71 (354)
T TIGR02142 4 RFSKRL--------GDFS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR--PDEGEIVLNGRTLFDSRKGIFLP 71 (354)
T ss_pred EEEEEE--------CCEE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECccCccccccc
Confidence 788887 2333 4 9999999999999999999999999999999653 468999999998742
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHH
Q 006571 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (640)
Q Consensus 226 ~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (640)
..++.++||+|++.+|+.+||+||+.|+.... ...+.+++++++++.+||.+..++. +..|||||||||+
T Consensus 72 ~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LSgGqkqRva 141 (354)
T TIGR02142 72 PEKRRIGYVFQEARLFPHLSVRGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRL-----PGRLSGGEKQRVA 141 (354)
T ss_pred hhhCCeEEEecCCccCCCCcHHHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHHHHH
Confidence 24678999999999999999999999875421 1233456788999999998766654 5789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHH
Q 006571 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (640)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (640)
|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++..+||+|++|++|++++.|+++++.
T Consensus 142 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 220 (354)
T TIGR02142 142 IGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQ-EVLRLADRVVVLEDGRVAAAGPIAEVW 220 (354)
T ss_pred HHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEEECCHHHHh
Confidence 999999999999999999999999999999999999875 899999999975 577889999999999999999998875
Q ss_pred H
Q 006571 385 A 385 (640)
Q Consensus 385 ~ 385 (640)
.
T Consensus 221 ~ 221 (354)
T TIGR02142 221 A 221 (354)
T ss_pred c
Confidence 3
No 195
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.3e-42 Score=351.38 Aligned_cols=215 Identities=30% Similarity=0.541 Sum_probs=185.6
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--hc
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SL 227 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--~~ 227 (640)
|+++|++++| ++ ++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++.. ..
T Consensus 1 l~~~~l~~~~--------~~-~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~--p~~G~v~i~g~~~~~~~~~ 69 (235)
T cd03299 1 LKVENLSKDW--------KE-FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK--PDSGKILLNGKDITNLPPE 69 (235)
T ss_pred CeeEeEEEEe--------CC-ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcCcCChh
Confidence 4689999988 22 38999999999999999999999999999999999653 568999999998753 23
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHH
Q 006571 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (640)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (640)
++.++|++|++.+++.+|+.||+.+..... .....+..+.+.++++.+||.+..++. ++.||||||||++||
T Consensus 70 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~la 141 (235)
T cd03299 70 KRDISYVPQNYALFPHMTVYKNIAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRK-----PETLSGGEQQRVAIA 141 (235)
T ss_pred HcCEEEEeecCccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcC-----cccCCHHHHHHHHHH
Confidence 568999999999999899999999865332 123444556778899999998766654 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHH
Q 006571 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (640)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (640)
|||+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|+++++.
T Consensus 142 ral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 218 (235)
T cd03299 142 RALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFE-EAWALADKVAIMLNGKLIQVGKPEEVF 218 (235)
T ss_pred HHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 9999999999999999999999999999999998764 899999999975 467789999999999999999988764
No 196
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-42 Score=372.61 Aligned_cols=207 Identities=28% Similarity=0.483 Sum_probs=180.5
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (640)
|++ ||+++| +++. + |+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 2 l~~-~l~k~~--------~~~~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~~~~~~~~ 68 (352)
T PRK11144 2 LEL-NFKQQL--------GDLC-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTR--PQKGRIVLNGRVLFDAEKG 68 (352)
T ss_pred eEE-EEEEEe--------CCEE-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccccc
Confidence 677 899988 2222 3 8999999999999999999999999999999653 468999999998642
Q ss_pred ----hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHH
Q 006571 226 ----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (640)
Q Consensus 226 ----~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 301 (640)
..++.++||+|++.+|+.+||+||+.|+.. ....++++++++.+||.+..+.. +..||||||
T Consensus 69 ~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~ 134 (352)
T PRK11144 69 ICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMA---------KSMVAQFDKIVALLGIEPLLDRY-----PGSLSGGEK 134 (352)
T ss_pred cccchhhCCEEEEcCCcccCCCCcHHHHHHhhhh---------hhhHHHHHHHHHHcCCchhhhCC-----cccCCHHHH
Confidence 246789999999999999999999998642 12345688899999998766653 578999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecCh
Q 006571 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (640)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (640)
|||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|+|++||++. ++..+||++++|++|+++..|++
T Consensus 135 qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~-~~~~~~d~i~~l~~G~i~~~g~~ 213 (352)
T PRK11144 135 QRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLD-EILRLADRVVVLEQGKVKAFGPL 213 (352)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCEEEEEeCCEEEEecCH
Confidence 9999999999999999999999999999999999999999865 899999999975 57789999999999999999999
Q ss_pred HHHH
Q 006571 381 SEAM 384 (640)
Q Consensus 381 ~~~~ 384 (640)
+++.
T Consensus 214 ~~i~ 217 (352)
T PRK11144 214 EEVW 217 (352)
T ss_pred HHHH
Confidence 9885
No 197
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.7e-43 Score=391.97 Aligned_cols=220 Identities=22% Similarity=0.334 Sum_probs=188.9
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CcccEEEECCEeCCh--
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYSK-- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~-~~~G~I~~~G~~~~~-- 225 (640)
+|+++||+++| +++++|+||||+|++||+++|+||||||||||+|+|+|.+. | +.+|+|.++|+++..
T Consensus 5 ~l~~~nl~~~~--------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-~~~~~G~i~~~g~~~~~~~ 75 (506)
T PRK13549 5 LLEMKNITKTF--------GGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYP-HGTYEGEIIFEGEELQASN 75 (506)
T ss_pred eEEEeeeEEEe--------CCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC-CCCCCeEEEECCEECCCCC
Confidence 69999999998 34579999999999999999999999999999999999654 3 368999999998742
Q ss_pred ---hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHH
Q 006571 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (640)
Q Consensus 226 ---~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (640)
..++.+|||+|++.+++.+||+||+.++...+.......++..++++++++.+||.+..+.. +.+|||||||
T Consensus 76 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGqkq 150 (506)
T PRK13549 76 IRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATP-----VGNLGLGQQQ 150 (506)
T ss_pred HHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccc-----hhhCCHHHHH
Confidence 13567999999999999999999999875422101123344456788999999998766654 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHH
Q 006571 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (640)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (640)
||+|||||+.+|+||||||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.||+|++|++|++++.|++++
T Consensus 151 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~ 229 (506)
T PRK13549 151 LVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLN-EVKAISDTICVIRDGRHIGTRPAAG 229 (506)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhcCEEEEEECCEEeeeccccc
Confidence 999999999999999999999999999999999999999877999999999975 4678899999999999999999876
Q ss_pred H
Q 006571 383 A 383 (640)
Q Consensus 383 ~ 383 (640)
+
T Consensus 230 ~ 230 (506)
T PRK13549 230 M 230 (506)
T ss_pred C
Confidence 4
No 198
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=2.2e-42 Score=358.11 Aligned_cols=226 Identities=20% Similarity=0.419 Sum_probs=186.5
Q ss_pred eEEEEeEEEEEeeccc-cccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 006571 149 YLKFTDVTYKVILKGM-TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~-~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (640)
+|+++||+++|..+.. ...+.+++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~ 81 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE--PTSGELLIDDHPLHFGD 81 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECCCCc
Confidence 5899999999831100 00123579999999999999999999999999999999999653 568999999998742
Q ss_pred --hccCcEEEEccCCC--CCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCccCCcCCHHH
Q 006571 226 --SLKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGE 300 (640)
Q Consensus 226 --~~~~~i~yV~Q~~~--l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LSGGq 300 (640)
..++.++||+|++. +++.+||.+++.+...... .....+..+++.++++.+||. +..+. .+..|||||
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LS~G~ 154 (267)
T PRK15112 82 YSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASY-----YPHMLAPGQ 154 (267)
T ss_pred hhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhc-----CchhcCHHH
Confidence 23457999999975 6778899999988654321 123344556788999999994 44443 346899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecC
Q 006571 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (640)
Q Consensus 301 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (640)
||||+|||+|+.+|+||||||||+|||+.++..+.+.|++++++ |+|||++||++. .+..+||++++|++|++++.|+
T Consensus 155 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~G~i~~~~~ 233 (267)
T PRK15112 155 KQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG-MMKHISDQVLVMHQGEVVERGS 233 (267)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhcCEEEEEECCEEEecCC
Confidence 99999999999999999999999999999999999999999864 899999999975 5777899999999999999999
Q ss_pred hHHHH
Q 006571 380 ASEAM 384 (640)
Q Consensus 380 ~~~~~ 384 (640)
++++.
T Consensus 234 ~~~~~ 238 (267)
T PRK15112 234 TADVL 238 (267)
T ss_pred HHHHh
Confidence 88764
No 199
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-42 Score=357.28 Aligned_cols=223 Identities=24% Similarity=0.377 Sum_probs=185.1
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---CcccEEEECCEeCC
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYS 224 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~---~~~G~I~~~G~~~~ 224 (640)
..|+++||+++| +++++|+|+||+|++||+++|+||||||||||+++|+|....+ +.+|+|.++|.++.
T Consensus 24 ~~l~~~nl~~~~--------~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~ 95 (272)
T PRK14236 24 TALEVRNLNLFY--------GDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIY 95 (272)
T ss_pred cEEEEEEEEEEE--------CCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECc
Confidence 369999999998 2457999999999999999999999999999999999965421 36899999999874
Q ss_pred h------hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCH
Q 006571 225 K------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (640)
Q Consensus 225 ~------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (640)
. .+++.++|++|++.+|+. ||+||+.+...... ....+..++++.++++.+++.+...+.. +..+..|||
T Consensus 96 ~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~ 171 (272)
T PRK14236 96 DKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQG--INNRRVLDEAVERSLRGAALWDEVKDRL-HENAFGLSG 171 (272)
T ss_pred ccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCChhHHHHh-hCCcccCCH
Confidence 2 346789999999999986 99999998754321 1122334456788888888864211111 234578999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEec
Q 006571 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (640)
Q Consensus 299 GqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (640)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||++. ++.+.||++++|++|++++.|
T Consensus 172 Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~G~i~~~g 249 (272)
T PRK14236 172 GQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQ-QAARVSDYTAFMYMGKLVEYG 249 (272)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHH-HHHhhCCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999999999999976 789999999975 467889999999999999999
Q ss_pred ChHHHH
Q 006571 379 KASEAM 384 (640)
Q Consensus 379 ~~~~~~ 384 (640)
+++++.
T Consensus 250 ~~~~~~ 255 (272)
T PRK14236 250 DTDTLF 255 (272)
T ss_pred CHHHHh
Confidence 988764
No 200
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-42 Score=356.17 Aligned_cols=222 Identities=24% Similarity=0.395 Sum_probs=182.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC-CC--CcccEEEECCEeCCh
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLM-EP--TVGGSITYNDHPYSK 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~-~~--~~~G~I~~~G~~~~~ 225 (640)
.|+++|++++| +++.+|+|+||+|++||+++|+||||||||||+++|+|... .+ +.+|+|.++|+++..
T Consensus 21 ~l~~~~l~~~~--------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 92 (268)
T PRK14248 21 ILEVKDLSIYY--------GEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILD 92 (268)
T ss_pred eEEEEEEEEEe--------CCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccc
Confidence 69999999998 34579999999999999999999999999999999999542 11 468999999998742
Q ss_pred ------hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHH
Q 006571 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (640)
Q Consensus 226 ------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (640)
..++.++|++|++.+++. |++||+.++..... .......++.+.+.++.+++.+..... -+..+..||||
T Consensus 93 ~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LSgG 168 (268)
T PRK14248 93 SNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAG--ERRKSVLDEIVEESLTKAALWDEVKDR-LHSSALSLSGG 168 (268)
T ss_pred ccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCCcchHHH-HhcCcccCCHH
Confidence 346789999999999985 99999998643221 112223345577788888875321111 12345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecC
Q 006571 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (640)
Q Consensus 300 qrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (640)
||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+.||++++|++|++++.|+
T Consensus 169 q~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~~~ 246 (268)
T PRK14248 169 QQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQ-QALRVSDRTAFFLNGDLVEYDQ 246 (268)
T ss_pred HHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHH-HHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999965 689999999975 4678899999999999999999
Q ss_pred hHHHH
Q 006571 380 ASEAM 384 (640)
Q Consensus 380 ~~~~~ 384 (640)
++++.
T Consensus 247 ~~~~~ 251 (268)
T PRK14248 247 TEQIF 251 (268)
T ss_pred HHHHH
Confidence 88764
No 201
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-42 Score=352.76 Aligned_cols=222 Identities=24% Similarity=0.412 Sum_probs=182.8
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-C--CcccEEEECCEeCCh
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYSK 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~-~--~~~G~I~~~G~~~~~ 225 (640)
.|+++||+++| +.+++|+|+||+|++||+++|+||||||||||+++|+|...+ | +.+|+|.++|+++..
T Consensus 4 ~l~~~~l~~~~--------~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~ 75 (251)
T PRK14251 4 IISAKDVHLSY--------GNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYG 75 (251)
T ss_pred eEEEEeeEEEE--------CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEccc
Confidence 58999999998 245799999999999999999999999999999999996532 2 358999999998631
Q ss_pred ------hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHH
Q 006571 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (640)
Q Consensus 226 ------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (640)
..++.++|++|++.+++ .||+||+.++..... ....+...+++.++++.+++....... -+..+.+||||
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~G 151 (251)
T PRK14251 76 SKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAG--VKDKELIDQRVEESLKQAAIWKETKDN-LDRNAQAFSGG 151 (251)
T ss_pred ccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCcchHHH-hccChhhCCHH
Confidence 34677999999999886 799999988653221 112233345677888888884221100 12345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecC
Q 006571 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (640)
Q Consensus 300 qrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (640)
||||++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ ++|||++||++. .+.+.||+|++|++|+++..|+
T Consensus 152 q~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~~G~i~~~~~ 229 (251)
T PRK14251 152 QQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQ-QAGRISDQTAFLMNGDLIEAGP 229 (251)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHH-HHHhhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999864 789999999975 4678899999999999999999
Q ss_pred hHHHH
Q 006571 380 ASEAM 384 (640)
Q Consensus 380 ~~~~~ 384 (640)
++++.
T Consensus 230 ~~~~~ 234 (251)
T PRK14251 230 TEEMF 234 (251)
T ss_pred HHHHH
Confidence 98864
No 202
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-42 Score=352.96 Aligned_cols=222 Identities=24% Similarity=0.386 Sum_probs=183.3
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---CcccEEEECCEeCC-
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYS- 224 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~---~~~G~I~~~G~~~~- 224 (640)
.|+++|+++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|..... +.+|+|.++|.++.
T Consensus 3 ~l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~ 74 (249)
T PRK14253 3 KFNIENLDLFY--------GENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYG 74 (249)
T ss_pred eEEEeccEEEE--------CCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEccc
Confidence 58999999998 3457999999999999999999999999999999999965321 35899999998873
Q ss_pred ----hhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHH
Q 006571 225 ----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (640)
Q Consensus 225 ----~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 300 (640)
...++.++|++|++.+++ .||.||+.++.... ....+....+++.+.++.+++.+...... +..+.+|||||
T Consensus 75 ~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~LS~G~ 150 (249)
T PRK14253 75 NIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQ--GIKDKKVLDEVVERSLRGAALWDEVKDRL-KSHAFGLSGGQ 150 (249)
T ss_pred ccchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhc--CCCchHHHHHHHHHHHHHcCCchhhhHHh-hcCcccCCHHH
Confidence 134678999999999997 79999999865321 11123334556778888888754221111 23457899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecCh
Q 006571 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (640)
Q Consensus 301 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (640)
||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+.||++++|++|++++.|++
T Consensus 151 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~~~d~i~~l~~G~i~~~g~~ 228 (249)
T PRK14253 151 QQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQ-QARRISDRTAFFLMGELVEHDDT 228 (249)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999976 689999999975 57788999999999999999998
Q ss_pred HHHH
Q 006571 381 SEAM 384 (640)
Q Consensus 381 ~~~~ 384 (640)
+++.
T Consensus 229 ~~~~ 232 (249)
T PRK14253 229 QVIF 232 (249)
T ss_pred HHHH
Confidence 8763
No 203
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=1.9e-44 Score=407.40 Aligned_cols=332 Identities=23% Similarity=0.273 Sum_probs=222.1
Q ss_pred hHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchhh
Q 006571 10 LARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGA 89 (640)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 89 (640)
..++.+++.++..+...|.....+++|+++.+..+.+++.+...+......+.................-..+.-+..|+
T Consensus 171 ~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (529)
T TIGR02857 171 AARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFATLSVALVAVYIG 250 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666778888899999999999999999999888876554433322110000000000000001111111122344
Q ss_pred hHhhhhhhhhhhhhccccCC----CCccc------------cccCCCCCCCCCccccccccCCCCCCCCCCCCCeeEEEE
Q 006571 90 ALSRASSASLGLSFSFTGFT----MPPDE------------IADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFT 153 (640)
Q Consensus 90 ~~~~~~~~~~g~~~~~~~~~----~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 153 (640)
..+..|..+.|.++.+..+. .|... .+..+.....+.++ ...+.....+.....|+++
T Consensus 251 ~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~------~~~~~~~~~~~~~~~i~~~ 324 (529)
T TIGR02857 251 FRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPR------PLAGKAPVTAAPAPSLEFS 324 (529)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc------ccCCCcCCCCCCCCeEEEE
Confidence 44445555666555554321 11111 11111111111000 0000000001111369999
Q ss_pred eEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC----hhccC
Q 006571 154 DVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSLKS 229 (640)
Q Consensus 154 ~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~----~~~~~ 229 (640)
||+|+|+ ..++++|+|+|++|+|||.+||+||||||||||+|+|+|. ++ +.+|+|.+||.++. +.+|+
T Consensus 325 ~v~f~y~------~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~-~~-~~~G~I~~~g~~i~~~~~~~lr~ 396 (529)
T TIGR02857 325 GLSVAYP------GRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGF-VD-PTEGSIAVNGVPLADADADSWRD 396 (529)
T ss_pred EEEEECC------CCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcC-CC-CCCcEEEECCEehhhCCHHHHHh
Confidence 9999983 1235799999999999999999999999999999999985 43 45899999999875 35788
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcC-------CCccccccccCccCCcCCHHHHH
Q 006571 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-------LERCQDTMIGGSFVRGVSGGERK 302 (640)
Q Consensus 230 ~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~t~vg~~~~~~LSGGqrq 302 (640)
+++||+|++.+|+. |++|||.++.. ..+++ ++.+.++..+ ++++.||.+|+. ...|||||||
T Consensus 397 ~i~~v~Q~~~lf~~-ti~~Ni~~~~~-----~~~~~----~i~~a~~~~~l~~~i~~lp~Gldt~v~e~-g~~LSgGq~q 465 (529)
T TIGR02857 397 QIAWVPQHPFLFAG-TIAENIRLARP-----DASDA----EIRRALERAGLDEFVAALPQGLDTLIGEG-GAGLSGGQAQ 465 (529)
T ss_pred heEEEcCCCcccCc-CHHHHHhccCC-----CCCHH----HHHHHHHHcCcHHHHHhCcccccchhccc-cccCCHHHHH
Confidence 99999999999975 99999998631 12222 2333333332 466789998764 4679999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEE
Q 006571 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 369 (640)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL 369 (640)
|++|||||+++|++++||||||+||+.++..+.+.|+++. +++|+|+++|+++. .+.||+|++|
T Consensus 466 ri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~--~~~~d~i~~l 529 (529)
T TIGR02857 466 RLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRLAL--AERADRIVVL 529 (529)
T ss_pred HHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCHHH--HHhCCEEEeC
Confidence 9999999999999999999999999999999999999875 58999999999753 5789999985
No 204
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=3e-42 Score=345.14 Aligned_cols=209 Identities=26% Similarity=0.475 Sum_probs=178.0
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--hc
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SL 227 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--~~ 227 (640)
++++||++.|. .+++|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. ..
T Consensus 1 ~~~~~l~~~~~----------~~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~ 68 (213)
T TIGR01277 1 LALDKVRYEYE----------HLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE--PASGSIKVNDQSHTGLAPY 68 (213)
T ss_pred CeEEeeeEEeC----------CcceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEcccCChh
Confidence 47899999881 24689999999999999999999999999999999653 568999999998743 35
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHH
Q 006571 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (640)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (640)
++.++||+|++.+|+.+|+.||+.+...... . .....+++++++++.+||.+..++ .++.||||||||++||
T Consensus 69 ~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~--~-~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrl~la 140 (213)
T TIGR01277 69 QRPVSMLFQENNLFAHLTVRQNIGLGLHPGL--K-LNAEQQEKVVDAAQQVGIADYLDR-----LPEQLSGGQRQRVALA 140 (213)
T ss_pred ccceEEEeccCccCCCCcHHHHHHhHhhccC--C-ccHHHHHHHHHHHHHcCcHHHhhC-----CcccCCHHHHHHHHHH
Confidence 6789999999999998999999987643211 1 122234567889999999776655 3578999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecC
Q 006571 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (640)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (640)
|+|+.+|++++|||||+|||+.++..+.+.|+++.++ |+|||+++|++. .+.+.||++++|++|++++.|.
T Consensus 141 ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~-~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 141 RCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCeEEEEECCeEEEecC
Confidence 9999999999999999999999999999999999764 899999999965 4667899999999999998874
No 205
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-42 Score=352.95 Aligned_cols=222 Identities=27% Similarity=0.417 Sum_probs=183.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-C--CcccEEEECCEeCCh
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYSK 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~-~--~~~G~I~~~G~~~~~ 225 (640)
.|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|.... | +.+|+|.++|+++..
T Consensus 6 ~i~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~ 77 (253)
T PRK14261 6 ILSTKNLNLWY--------GEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMD 77 (253)
T ss_pred eEEEeeeEEEE--------CCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccc
Confidence 69999999998 345799999999999999999999999999999999996432 2 147999999998742
Q ss_pred ------hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHH
Q 006571 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (640)
Q Consensus 226 ------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (640)
..++.++|++|++.+|+. ||+||+.+....+. .......++.+.++++.+++.+...+.. +..+..||||
T Consensus 78 ~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~G 153 (253)
T PRK14261 78 SGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHG--EKNKKTLDTIVEKSLKGAALWDEVKDRL-HDSALSLSGG 153 (253)
T ss_pred cccchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcC--CCCHHHHHHHHHHHHHHhcCchhhHHHh-hcChhhCCHH
Confidence 345679999999999985 99999998754321 1122334556778888888753221111 2345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecC
Q 006571 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (640)
Q Consensus 300 qrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (640)
||||++|||+|+.+|+++||||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+.||++++|++|+++..|+
T Consensus 154 ~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~-~~~~~~d~v~~l~~G~i~~~g~ 231 (253)
T PRK14261 154 QQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQ-QAARVSDYTGFMYLGKLIEFDK 231 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHH-HHHhhCCEEEEEECCEEEEcCC
Confidence 99999999999999999999999999999999999999999976 689999999965 4667899999999999999999
Q ss_pred hHHHH
Q 006571 380 ASEAM 384 (640)
Q Consensus 380 ~~~~~ 384 (640)
++++.
T Consensus 232 ~~~~~ 236 (253)
T PRK14261 232 TTQIF 236 (253)
T ss_pred HHHHH
Confidence 98764
No 206
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.5e-42 Score=343.42 Aligned_cols=195 Identities=37% Similarity=0.672 Sum_probs=166.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CcccEEEECCEeCCh--
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYSK-- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~-~~~G~I~~~G~~~~~-- 225 (640)
.+.|+||+|.|+.+ ++++.+|+|+||+|++||+++|+||||||||||+++|+|..... +.+|+|.++|.++..
T Consensus 3 ~~~~~~~~~~~~~~----~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~ 78 (202)
T cd03233 3 TLSWRNISFTTGKG----RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA 78 (202)
T ss_pred eEEEEccEEEeccC----CCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch
Confidence 57999999999542 24678999999999999999999999999999999999965311 568999999998753
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHH
Q 006571 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (640)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (640)
..++.++|++|++.+++.+||+||+.++.... .+ ..+..||||||||+
T Consensus 79 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~-----~~~~~LS~Ge~qrl 127 (202)
T cd03233 79 EKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GN-----EFVRGISGGERKRV 127 (202)
T ss_pred hhhcceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------cc-----cchhhCCHHHHHHH
Confidence 35678999999999999999999998753210 12 23468999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEec
Q 006571 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (640)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (640)
+|||||+.+|++|||||||+|||+.++..+.+.|++++++ +.|+|+++|+...++.+.||++++|++|++++.|
T Consensus 128 ~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 128 SIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred HHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 9999999999999999999999999999999999999765 6777777766445677899999999999998765
No 207
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.4e-42 Score=340.73 Aligned_cols=189 Identities=48% Similarity=0.839 Sum_probs=165.5
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhcc
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~ 228 (640)
.|+++|+++.|... ..++++|+|+||++++||+++|+||||||||||+++|+|....++.+|+|.++|+++....+
T Consensus 3 ~l~~~~l~~~~~~~----~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVK----GGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQ 78 (192)
T ss_pred EEEEeeeEEEecCC----CCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhh
Confidence 58999999998311 11357999999999999999999999999999999999964323568999999998765567
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHH
Q 006571 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN 308 (640)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~ 308 (640)
+.++|++|++.+++.+||+||+.++... + .||||||||++|||
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~-------------------~------------------~LSgGe~qrv~la~ 121 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFSALL-------------------R------------------GLSVEQRKRLTIGV 121 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHHHHH-------------------h------------------cCCHHHhHHHHHHH
Confidence 7899999999999999999999875210 0 59999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcC-CeEEEec
Q 006571 309 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK-GSLLYFG 378 (640)
Q Consensus 309 aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~-G~iv~~G 378 (640)
||+.+|++|||||||+|||+.++..+.+.|+++++.|+|||++||++..++.+.||++++|++ |++++.|
T Consensus 122 al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 122 ELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 999999999999999999999999999999999877999999999976446688999999999 9999876
No 208
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.1e-42 Score=351.93 Aligned_cols=221 Identities=22% Similarity=0.390 Sum_probs=182.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC----cccEEEECCEeCC
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT----VGGSITYNDHPYS 224 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~----~~G~I~~~G~~~~ 224 (640)
.|+++||+++| +++.+|+|+||+|++|++++|+||||||||||+++|+|... |. .+|+|.++|.++.
T Consensus 4 ~l~~~~l~~~~--------~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~-~~~~~~~~G~v~~~g~~~~ 74 (251)
T PRK14249 4 KIKIRGVNFFY--------HKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMND-IVSGARLEGAVLLDNENIY 74 (251)
T ss_pred eEEEEEEEEEE--------CCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC-ccccCCcccEEEECCEEcc
Confidence 58999999998 24569999999999999999999999999999999999653 32 2699999999864
Q ss_pred h------hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCH
Q 006571 225 K------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (640)
Q Consensus 225 ~------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (640)
. .+++.++||+|++.+++. |++||+.+....+.. ...+...+.+++.++.++|.+..... .+..+..|||
T Consensus 75 ~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LS~ 150 (251)
T PRK14249 75 SPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGT--TAQSRLDEVVEKSLRQAALWDEVKDN-LHKSGLALSG 150 (251)
T ss_pred ccccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCC--ChhhHHHHHHHHHHHHhCCchhhhhH-hhCCcccCCH
Confidence 2 346789999999999975 999999987543211 11223345567778888875322111 2345678999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEec
Q 006571 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (640)
Q Consensus 299 GqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (640)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|+++. +++|||++||++. .+.+.||++++|++|++++.|
T Consensus 151 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~-~~~~~~d~i~~l~~G~i~~~~ 228 (251)
T PRK14249 151 GQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQ-QAARASDWTGFLLTGDLVEYG 228 (251)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHhhCCEEEEEeCCeEEEeC
Confidence 99999999999999999999999999999999999999999985 5899999999975 467889999999999999999
Q ss_pred ChHHHH
Q 006571 379 KASEAM 384 (640)
Q Consensus 379 ~~~~~~ 384 (640)
+++++.
T Consensus 229 ~~~~~~ 234 (251)
T PRK14249 229 RTGEIF 234 (251)
T ss_pred CHHHHH
Confidence 988864
No 209
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-42 Score=358.84 Aligned_cols=220 Identities=24% Similarity=0.379 Sum_probs=183.0
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC-------cccEEEECCEe
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT-------VGGSITYNDHP 222 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~-------~~G~I~~~G~~ 222 (640)
|+++|++++| +++.+|+|+||+|++||+++|+||||||||||+|+|+|.+. |. .+|+|.++|.+
T Consensus 2 l~~~nl~~~~--------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~-p~~~~~~~~~~G~i~~~g~~ 72 (272)
T PRK13547 2 LTADHLHVAR--------RHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLT-GGGAPRGARVTGDVTLNGEP 72 (272)
T ss_pred eEEEEEEEEE--------CCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CcccccccCCceEEEECCEE
Confidence 7899999998 34579999999999999999999999999999999999653 22 17999999998
Q ss_pred CCh----hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCC-CCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCC
Q 006571 223 YSK----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (640)
Q Consensus 223 ~~~----~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LS 297 (640)
+.. ..++.++|++|++.+++.+||+||+.++...... ......+..+++.++++.+||.+..++ .+..||
T Consensus 73 ~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS 147 (272)
T PRK13547 73 LAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGR-----DVTTLS 147 (272)
T ss_pred cccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcC-----CcccCC
Confidence 742 3456789999998765568999999885321100 011112344567889999999765554 357899
Q ss_pred HHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEE
Q 006571 298 GGERKRVCIGNEII---------INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLI 367 (640)
Q Consensus 298 GGqrqRv~IA~aL~---------~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~ 367 (640)
|||||||+|||+|+ .+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++. .+.++||+++
T Consensus 148 gG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~~~~~~d~i~ 226 (272)
T PRK13547 148 GGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-LAARHADRIA 226 (272)
T ss_pred HHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEE
Confidence 99999999999999 599999999999999999999999999999875 899999999975 4677899999
Q ss_pred EEcCCeEEEecChHHHH
Q 006571 368 LLGKGSLLYFGKASEAM 384 (640)
Q Consensus 368 vL~~G~iv~~G~~~~~~ 384 (640)
+|++|++++.|+++++.
T Consensus 227 ~l~~G~i~~~g~~~~~~ 243 (272)
T PRK13547 227 MLADGAIVAHGAPADVL 243 (272)
T ss_pred EEECCeEEEecCHHHHc
Confidence 99999999999988763
No 210
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=6.9e-44 Score=442.85 Aligned_cols=217 Identities=23% Similarity=0.359 Sum_probs=183.5
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC---
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--- 224 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~--- 224 (640)
..|+|+||+|+|. .+.+++|+||||+|+|||.+||+|+||||||||+++|.| +++| .+|+|.+||.|+.
T Consensus 1236 g~I~f~nVsf~Y~------~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~r-l~~p-~~G~I~IDG~dI~~i~ 1307 (1622)
T PLN03130 1236 GSIKFEDVVLRYR------PELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFR-IVEL-ERGRILIDGCDISKFG 1307 (1622)
T ss_pred CcEEEEEEEEEeC------CCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhC-cCCC-CCceEEECCEecccCC
Confidence 4699999999993 123579999999999999999999999999999999996 5554 5899999999986
Q ss_pred -hhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHH-----HHHHHHHHcCCCccccccccCccCCcCCH
Q 006571 225 -KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINELGLERCQDTMIGGSFVRGVSG 298 (640)
Q Consensus 225 -~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (640)
+.+|++|++||||+.+|+. |++|||.++. ..++++..+ .+++.++ .++++.||.+|+. ...|||
T Consensus 1308 l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~------~~tdeei~~Al~~a~l~~~I~--~lp~GLdt~Vge~-G~nLSg 1377 (1622)
T PLN03130 1308 LMDLRKVLGIIPQAPVLFSG-TVRFNLDPFN------EHNDADLWESLERAHLKDVIR--RNSLGLDAEVSEA-GENFSV 1377 (1622)
T ss_pred HHHHHhccEEECCCCccccc-cHHHHhCcCC------CCCHHHHHHHHHHcCcHHHHH--hCccccCccccCC-CCCCCH
Confidence 3679999999999999976 9999998642 122322211 2233343 3467889999864 457999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEec
Q 006571 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (640)
Q Consensus 299 GqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (640)
|||||++|||||+++|+||+||||||+||+.+...|.+.|++.. +++|||+|+|++++ ...||||++|++|+|++.|
T Consensus 1378 GQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~t--I~~~DrIlVLd~G~IvE~G 1454 (1622)
T PLN03130 1378 GQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNT--IIDCDRILVLDAGRVVEFD 1454 (1622)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChHH--HHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999999875 48999999999875 4669999999999999999
Q ss_pred ChHHHHH
Q 006571 379 KASEAMA 385 (640)
Q Consensus 379 ~~~~~~~ 385 (640)
+|+++++
T Consensus 1455 t~~eLl~ 1461 (1622)
T PLN03130 1455 TPENLLS 1461 (1622)
T ss_pred CHHHHHh
Confidence 9999974
No 211
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=6.5e-42 Score=352.65 Aligned_cols=218 Identities=26% Similarity=0.402 Sum_probs=182.5
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEe-----C
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP-----Y 223 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~-----~ 223 (640)
.|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|++ +
T Consensus 6 ~l~~~~l~~~~--------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~i 75 (258)
T PRK11701 6 LLSVRGLTKLY--------GPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLA--PDAGEVHYRMRDGQLRDL 75 (258)
T ss_pred eEEEeeeEEEc--------CCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCcccccccc
Confidence 69999999998 24579999999999999999999999999999999999653 568999999987 5
Q ss_pred Ch----h----ccCcEEEEccCC--CCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCc-cccccccCcc
Q 006571 224 SK----S----LKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSF 292 (640)
Q Consensus 224 ~~----~----~~~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~ 292 (640)
.. . .++.++||+|++ .+++.+|+.||+.+...... .....+...++.++++.+++.+ ..++ .
T Consensus 76 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~ 148 (258)
T PRK11701 76 YALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVG--ARHYGDIRATAGDWLERVEIDAARIDD-----L 148 (258)
T ss_pred ccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHcCCChhHHhC-----C
Confidence 32 1 245799999997 36777899999986532211 1122334566889999999963 4443 3
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcC
Q 006571 293 VRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGK 371 (640)
Q Consensus 293 ~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~ 371 (640)
+..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++. .+.+.||+|++|++
T Consensus 149 ~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~-~~~~~~d~i~~l~~ 227 (258)
T PRK11701 149 PTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLAHRLLVMKQ 227 (258)
T ss_pred CccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEEEC
Confidence 5789999999999999999999999999999999999999999999998765 899999999965 46678999999999
Q ss_pred CeEEEecChHHHH
Q 006571 372 GSLLYFGKASEAM 384 (640)
Q Consensus 372 G~iv~~G~~~~~~ 384 (640)
|++++.|+++++.
T Consensus 228 g~i~~~~~~~~~~ 240 (258)
T PRK11701 228 GRVVESGLTDQVL 240 (258)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999998864
No 212
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=1.2e-42 Score=353.26 Aligned_cols=214 Identities=31% Similarity=0.544 Sum_probs=172.6
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (640)
++++||+++|. ...+++|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 1 i~~~~l~~~~~------~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~ 72 (237)
T cd03252 1 ITFEHVRFRYK------PDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV--PENGRVLVDGHDLALADPA 72 (237)
T ss_pred CEEEEEEEecC------CCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCeehHhcCHH
Confidence 47899999882 123579999999999999999999999999999999999653 568999999998642
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHH-----HHHHHHHHHc--CCCccccccccCccCCcCCH
Q 006571 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKE-----KRAIDVINEL--GLERCQDTMIGGSFVRGVSG 298 (640)
Q Consensus 226 ~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~~t~vg~~~~~~LSG 298 (640)
.+++.++|++|++.+++ .||.||+.+.... ....... ..+.++++.+ ++....+ ..+.+|||
T Consensus 73 ~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~-----~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-----~~~~~LSg 141 (237)
T cd03252 73 WLRRQVGVVLQENVLFN-RSIRDNIALADPG-----MSMERVIEAAKLAGAHDFISELPEGYDTIVG-----EQGAGLSG 141 (237)
T ss_pred HHhhcEEEEcCCchhcc-chHHHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhCcccccchhh-----cCCCcCCH
Confidence 34678999999998885 6999999874311 1111111 1223444444 3332222 34578999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEec
Q 006571 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (640)
Q Consensus 299 GqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (640)
||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ |+|||++||++.. + ..||++++|++|++++.|
T Consensus 142 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~-~-~~~d~v~~l~~G~i~~~~ 218 (237)
T cd03252 142 GQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRLST-V-KNADRIIVMEKGRIVEQG 218 (237)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHH-H-HhCCEEEEEECCEEEEEc
Confidence 999999999999999999999999999999999999999999974 8999999999764 4 569999999999999999
Q ss_pred ChHHHHH
Q 006571 379 KASEAMA 385 (640)
Q Consensus 379 ~~~~~~~ 385 (640)
+++++..
T Consensus 219 ~~~~~~~ 225 (237)
T cd03252 219 SHDELLA 225 (237)
T ss_pred CHHHHHh
Confidence 9888753
No 213
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=2.8e-42 Score=387.46 Aligned_cols=219 Identities=23% Similarity=0.399 Sum_probs=187.8
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
+|+++||+++| +++++|+|+||+|++||+++|+||||||||||+|+|+|.+. +.+|+|.++|.++..
T Consensus 4 ~i~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~ 73 (501)
T PRK10762 4 LLQLKGIDKAF--------PGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYT--RDAGSILYLGKEVTFNGP 73 (501)
T ss_pred eEEEeeeEEEe--------CCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCCCCH
Confidence 59999999998 34579999999999999999999999999999999999653 468999999998742
Q ss_pred -h-ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCC-CCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHH
Q 006571 226 -S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (640)
Q Consensus 226 -~-~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (640)
. .++.++||+|++.+++.+||+||+.++...... ......+.++++.++++.+||.+..+.. +..|||||||
T Consensus 74 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~q 148 (501)
T PRK10762 74 KSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKL-----VGELSIGEQQ 148 (501)
T ss_pred HHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCc-----hhhCCHHHHH
Confidence 1 246799999999999999999999986432110 1122334456788999999998766654 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHH
Q 006571 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (640)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (640)
||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||+|++|++|+++..|++++
T Consensus 149 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (501)
T PRK10762 149 MVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLK-EIFEICDDVTVFRDGQFIAEREVAD 227 (501)
T ss_pred HHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEecCcCc
Confidence 999999999999999999999999999999999999999877999999999975 5778999999999999999998765
Q ss_pred H
Q 006571 383 A 383 (640)
Q Consensus 383 ~ 383 (640)
+
T Consensus 228 ~ 228 (501)
T PRK10762 228 L 228 (501)
T ss_pred C
Confidence 4
No 214
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.7e-42 Score=354.41 Aligned_cols=222 Identities=23% Similarity=0.411 Sum_probs=181.5
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-C--CcccEEEECCEeCCh
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYSK 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~-~--~~~G~I~~~G~~~~~ 225 (640)
.|+++||+++| +++.+|+|+||+|++||+++|+|+||||||||+++|+|.+.. + +.+|+|.++|+++..
T Consensus 24 ~l~~~~l~~~~--------~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~ 95 (271)
T PRK14238 24 VFDTQNLNLWY--------GEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFD 95 (271)
T ss_pred EEEEeeeEEEE--------CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccc
Confidence 69999999998 245699999999999999999999999999999999996531 2 468999999998731
Q ss_pred ------hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHH
Q 006571 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (640)
Q Consensus 226 ------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (640)
.+++.++|++|++.+|+ .||+||+.++..... .......++.+.+.++.+++.+...... +..+..||||
T Consensus 96 ~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~~-~~~~~~LSgG 171 (271)
T PRK14238 96 KSYSVEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHG--IKDKKTLDEIVEKSLRGAAIWDELKDRL-HDNAYGLSGG 171 (271)
T ss_pred ccccHHHHhhhEEEEecCCcccc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchHHHHH-hcCcccCCHH
Confidence 34678999999999987 499999998754321 1122233445677777775432111111 2345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecC
Q 006571 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (640)
Q Consensus 300 qrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (640)
||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.++||++++|++|++++.|+
T Consensus 172 e~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~i~~~~d~i~~l~~G~i~~~g~ 249 (271)
T PRK14238 172 QQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQ-QAARISDKTAFFLNGYVNEYDD 249 (271)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHH-HHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999976 799999999975 4678899999999999999999
Q ss_pred hHHHH
Q 006571 380 ASEAM 384 (640)
Q Consensus 380 ~~~~~ 384 (640)
++++.
T Consensus 250 ~~~~~ 254 (271)
T PRK14238 250 TDKIF 254 (271)
T ss_pred HHHHH
Confidence 88763
No 215
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-41 Score=354.75 Aligned_cols=221 Identities=24% Similarity=0.391 Sum_probs=186.1
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC----CcccEEEECCEeCC
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP----TVGGSITYNDHPYS 224 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~----~~~G~I~~~G~~~~ 224 (640)
.|+++||+++| +++++|+|+||+|++||+++|+||||||||||+++|+|... | +.+|+|.++|.++.
T Consensus 21 ~l~i~nl~~~~--------~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~-p~~~~~~~G~i~~~g~~i~ 91 (276)
T PRK14271 21 AMAAVNLTLGF--------AGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMND-KVSGYRYSGDVLLGGRSIF 91 (276)
T ss_pred EEEEeeEEEEE--------CCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCC-cCCCCCCceEEEECCEEcc
Confidence 68999999998 34679999999999999999999999999999999999653 3 36899999999874
Q ss_pred h-----hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHH
Q 006571 225 K-----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (640)
Q Consensus 225 ~-----~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (640)
. .+++.++|++|++.+|+ .||+||+.++.... ...+..+....+.++++.++|.+..++.. +..+..||||
T Consensus 92 ~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~l-~~~~~~LSgG 167 (276)
T PRK14271 92 NYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAH--KLVPRKEFRGVAQARLTEVGLWDAVKDRL-SDSPFRLSGG 167 (276)
T ss_pred ccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHcCCCchhhhHh-hCCcccCCHH
Confidence 2 34678999999999998 79999999864321 11234444456778889999865332222 2345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecC
Q 006571 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (640)
Q Consensus 300 qrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (640)
||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.++||++++|++|++++.|+
T Consensus 168 q~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~dri~~l~~G~i~~~g~ 245 (276)
T PRK14271 168 QQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLA-QAARISDRAALFFDGRLVEEGP 245 (276)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999976 589999999975 5778899999999999999999
Q ss_pred hHHHH
Q 006571 380 ASEAM 384 (640)
Q Consensus 380 ~~~~~ 384 (640)
++++.
T Consensus 246 ~~~~~ 250 (276)
T PRK14271 246 TEQLF 250 (276)
T ss_pred HHHHH
Confidence 98874
No 216
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.3e-43 Score=439.70 Aligned_cols=215 Identities=22% Similarity=0.349 Sum_probs=182.4
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC---
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--- 224 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~--- 224 (640)
..|+|+||+|+|. .+.+++|+|+||+|+|||.+||+|+||||||||+++|.| +++| .+|+|.+||.|+.
T Consensus 1233 g~I~f~nVsf~Y~------~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~r-l~~p-~~G~I~IdG~di~~i~ 1304 (1495)
T PLN03232 1233 GSIKFEDVHLRYR------PGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFR-IVEL-EKGRIMIDDCDVAKFG 1304 (1495)
T ss_pred CcEEEEEEEEEEC------CCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhC-CCcC-CCceEEECCEEhhhCC
Confidence 3699999999992 123579999999999999999999999999999999996 5544 5899999999986
Q ss_pred -hhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHc-------CCCccccccccCccCCcC
Q 006571 225 -KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL-------GLERCQDTMIGGSFVRGV 296 (640)
Q Consensus 225 -~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~l-------gL~~~~~t~vg~~~~~~L 296 (640)
+.+|++|+|||||+.+|+. |++|||.++. ..++++ +.++++.. .++++.||.+|.. ...|
T Consensus 1305 ~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~~------~~sdee----i~~al~~a~l~~~I~~lp~GLdt~v~e~-G~~L 1372 (1495)
T PLN03232 1305 LTDLRRVLSIIPQSPVLFSG-TVRFNIDPFS------EHNDAD----LWEALERAHIKDVIDRNPFGLDAEVSEG-GENF 1372 (1495)
T ss_pred HHHHHhhcEEECCCCeeeCc-cHHHHcCCCC------CCCHHH----HHHHHHHcCCHHHHHhCcCCCCceecCC-CCCC
Confidence 3679999999999999986 9999998642 123332 33333333 3466789998764 4569
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEE
Q 006571 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (640)
Q Consensus 297 SGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (640)
|||||||++|||||+++|+||+||||||+||++++..|.+.|++.. +++|||+|+|+++. ...||+|++|++|+|++
T Consensus 1373 SgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~t--i~~~DrIlVL~~G~ivE 1449 (1495)
T PLN03232 1373 SVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLNT--IIDCDKILVLSSGQVLE 1449 (1495)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHH--HHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999875 48999999999864 46699999999999999
Q ss_pred ecChHHHHH
Q 006571 377 FGKASEAMA 385 (640)
Q Consensus 377 ~G~~~~~~~ 385 (640)
.|+|+|+++
T Consensus 1450 ~Gt~~eLl~ 1458 (1495)
T PLN03232 1450 YDSPQELLS 1458 (1495)
T ss_pred ECCHHHHHh
Confidence 999999874
No 217
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-42 Score=387.80 Aligned_cols=219 Identities=25% Similarity=0.406 Sum_probs=187.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++|++++| +++++|+|+||+|++||+++|+||||||||||+|+|+|... +.+|+|.++|+++..
T Consensus 5 ~l~~~~l~~~~--------~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~~~~~ 74 (510)
T PRK09700 5 YISMAGIGKSF--------GPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE--PTKGTITINNINYNKLDH 74 (510)
T ss_pred eEEEeeeEEEc--------CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC--CCccEEEECCEECCCCCH
Confidence 69999999998 34579999999999999999999999999999999999653 468999999998742
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhcc--C-C-CCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHH
Q 006571 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLR--L-P-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (640)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~--~-~-~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (640)
..++.++||+|++.+++.+||+||+.++.... . . ......+..+++.++++.+||.+..++. +.+||||
T Consensus 75 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgG 149 (510)
T PRK09700 75 KLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEK-----VANLSIS 149 (510)
T ss_pred HHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccc-----hhhCCHH
Confidence 12457999999999999999999998754210 0 0 0012334456788999999998766654 4689999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecC
Q 006571 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (640)
Q Consensus 300 qrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (640)
|||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+..+||+|++|++|++++.|+
T Consensus 150 ~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~-~~~~~~d~v~~l~~G~i~~~g~ 228 (510)
T PRK09700 150 HKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA-EIRRICDRYTVMKDGSSVCSGM 228 (510)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEeeecc
Confidence 999999999999999999999999999999999999999999888999999999965 4678899999999999999999
Q ss_pred hHHH
Q 006571 380 ASEA 383 (640)
Q Consensus 380 ~~~~ 383 (640)
++++
T Consensus 229 ~~~~ 232 (510)
T PRK09700 229 VSDV 232 (510)
T ss_pred hhhC
Confidence 8764
No 218
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-41 Score=348.85 Aligned_cols=222 Identities=25% Similarity=0.395 Sum_probs=181.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-CC--cccEEEECCEeCCh
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-PT--VGGSITYNDHPYSK 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~-~~--~~G~I~~~G~~~~~ 225 (640)
+|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|.... |. .+|+|.++|+++..
T Consensus 5 ~l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~ 76 (252)
T PRK14255 5 IITSSDVHLFY--------GKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYA 76 (252)
T ss_pred eEEEEeEEEEE--------CCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEccc
Confidence 68999999998 245799999999999999999999999999999999996431 21 48999999998731
Q ss_pred ------hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHH
Q 006571 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (640)
Q Consensus 226 ------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (640)
.+++.++|++|++.+++ .||+||+.+....+.. ...+..++++.+.++.+++....... -+..+..||||
T Consensus 77 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~i~~~-~~~~~~~LS~G 152 (252)
T PRK14255 77 PNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGV--KDKAVLDEAVETSLKQAAIWDEVKDH-LHESALSLSGG 152 (252)
T ss_pred ccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCccchhhH-HhcCcccCCHH
Confidence 34678999999999998 6999999987543211 11222334566778887764221111 12345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecC
Q 006571 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (640)
Q Consensus 300 qrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (640)
||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||++. .+.+.||+|++|++|+++..|+
T Consensus 153 q~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~G~i~~~~~ 230 (252)
T PRK14255 153 QQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMH-QASRISDKTAFFLTGNLIEFAD 230 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999976 589999999975 4678899999999999999999
Q ss_pred hHHHH
Q 006571 380 ASEAM 384 (640)
Q Consensus 380 ~~~~~ 384 (640)
+.++.
T Consensus 231 ~~~~~ 235 (252)
T PRK14255 231 TKQMF 235 (252)
T ss_pred HHHHh
Confidence 88764
No 219
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.7e-42 Score=351.98 Aligned_cols=222 Identities=22% Similarity=0.423 Sum_probs=183.8
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-C--cccEEEECCEeCCh
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-T--VGGSITYNDHPYSK 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~-~--~~G~I~~~G~~~~~ 225 (640)
.|+++||+++| +++.+|+|+||+|++||+++|+|+||||||||+|+|+|.+... + .+|+|.++|+++..
T Consensus 7 ~l~~~~l~~~~--------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 78 (259)
T PRK14260 7 AIKVKDLSFYY--------NTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYD 78 (259)
T ss_pred eEEEEEEEEEE--------CCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccc
Confidence 69999999998 2456999999999999999999999999999999999965421 2 48999999998732
Q ss_pred ------hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHH
Q 006571 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (640)
Q Consensus 226 ------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (640)
.+++.++||+|++.+|+ +||+||+.++...+. ...+.+..+++.++++.+++.+..... .+..+..||||
T Consensus 79 ~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LS~G 154 (259)
T PRK14260 79 PRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA--KLPQADLDEIVESALKGAALWQEVKDK-LNKSALGLSGG 154 (259)
T ss_pred cccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhhH-hcCCcccCCHH
Confidence 34568999999999997 899999988754321 122334455677888888884321111 12346789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEc-----CCeE
Q 006571 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG-----KGSL 374 (640)
Q Consensus 300 qrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~-----~G~i 374 (640)
||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. ++.++||++++|+ +|++
T Consensus 155 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~i~~~~d~i~~l~~~~~~~G~i 232 (259)
T PRK14260 155 QQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQ-QATRVSDFTAFFSTDESRIGQM 232 (259)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCeEEEEeccCCCCceE
Confidence 99999999999999999999999999999999999999999875 689999999976 5778999999998 5999
Q ss_pred EEecChHHHH
Q 006571 375 LYFGKASEAM 384 (640)
Q Consensus 375 v~~G~~~~~~ 384 (640)
++.|+++++.
T Consensus 233 ~~~~~~~~~~ 242 (259)
T PRK14260 233 VEFGVTTQIF 242 (259)
T ss_pred EEeCCHHHHh
Confidence 9999999874
No 220
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-42 Score=335.24 Aligned_cols=216 Identities=29% Similarity=0.541 Sum_probs=185.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
+|+.+|++|+. ..+.+|++||++++|||++||+||||||||||||.|+|.+. +.+|++.+||.++..
T Consensus 1 mi~a~nls~~~--------~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~--p~~G~v~~~g~~l~~~~~ 70 (259)
T COG4559 1 MIRAENLSYSL--------AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELS--PDSGEVTLNGVPLNSWPP 70 (259)
T ss_pred CeeeeeeEEEe--------ecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccC--CCCCeEeeCCcChhhCCH
Confidence 47899999986 56789999999999999999999999999999999999764 468999999999853
Q ss_pred -hccCcEEEEccCCCC-CCCCCHHHHHHHHHhccCCCCc--cHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHH
Q 006571 226 -SLKSKIGFVTQDDVL-FPHLTVKETLTYAALLRLPNTL--TKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (640)
Q Consensus 226 -~~~~~i~yV~Q~~~l-~~~lTV~Enl~~~~~~~~~~~~--~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 301 (640)
++.++-+.+||+..+ || .||.|-+.++.. |... ...+..+.+++.+...++.+..... ...||||||
T Consensus 71 ~~lA~~raVlpQ~s~laFp-Ftv~eVV~mGr~---p~~~g~~~~e~~~i~~~ala~~d~~~la~R~-----y~~LSGGEq 141 (259)
T COG4559 71 EELARHRAVLPQNSSLAFP-FTVQEVVQMGRI---PHRSGREPEEDERIAAQALAATDLSGLAGRD-----YRTLSGGEQ 141 (259)
T ss_pred HHHHHHhhhcccCcccccc-eEHHHHHHhccc---ccccCCCchhhHHHHHHHHHHcChhhhhccc-----hhhcCchHH
Confidence 455678999999877 65 699999999863 3322 2234555678888888887766543 468999999
Q ss_pred HHHHHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEE
Q 006571 302 KRVCIGNEIII------NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (640)
Q Consensus 302 qRv~IA~aL~~------~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv 375 (640)
|||.+||.|+. ++++||||||||+||...+..++++.++++++|..|+++.||++- ...+||||++|++||++
T Consensus 142 QRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNL-AA~YaDrivll~~Grv~ 220 (259)
T COG4559 142 QRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNL-AAQYADRIVLLHQGRVI 220 (259)
T ss_pred HHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchH-HHHhhheeeeeeCCeEe
Confidence 99999999976 456999999999999999999999999999999999999999875 66899999999999999
Q ss_pred EecChHHHH
Q 006571 376 YFGKASEAM 384 (640)
Q Consensus 376 ~~G~~~~~~ 384 (640)
..|+|++++
T Consensus 221 a~g~p~~vl 229 (259)
T COG4559 221 ASGSPQDVL 229 (259)
T ss_pred ecCCHHHhc
Confidence 999999875
No 221
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.3e-42 Score=356.86 Aligned_cols=223 Identities=22% Similarity=0.366 Sum_probs=183.1
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC-CC--CcccEEEECCEeCC
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLM-EP--TVGGSITYNDHPYS 224 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~-~~--~~~G~I~~~G~~~~ 224 (640)
..|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|... .| +.+|+|.++|+++.
T Consensus 38 ~~l~~~~l~~~~--------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~ 109 (286)
T PRK14275 38 PHVVAKNFSIYY--------GEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIY 109 (286)
T ss_pred eEEEEeeeEEEE--------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhh
Confidence 369999999998 23469999999999999999999999999999999999642 13 36899999998863
Q ss_pred h------hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCH
Q 006571 225 K------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (640)
Q Consensus 225 ~------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (640)
. .+++.++||+|++.+++. ||.||+.++...+. ..+....++++.++++.+++.+..... -+..+..|||
T Consensus 110 ~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LSg 185 (286)
T PRK14275 110 GKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHG--INDKKQLEEIVEKSLRKAALWDEVSDR-LDKNALGLSG 185 (286)
T ss_pred hcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHhCCccchhhH-hhCChhhCCH
Confidence 2 246789999999999975 99999998754321 112233445677888888874211001 1234578999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEec
Q 006571 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (640)
Q Consensus 299 GqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (640)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.++||++++|++|++++.|
T Consensus 186 Gq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~-~~~~~~d~i~~L~~G~i~~~g 263 (286)
T PRK14275 186 GQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQ-QASRVSDYTMFFYEGVLVEHA 263 (286)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999875 689999999975 467889999999999999999
Q ss_pred ChHHHH
Q 006571 379 KASEAM 384 (640)
Q Consensus 379 ~~~~~~ 384 (640)
+++++.
T Consensus 264 ~~~~~~ 269 (286)
T PRK14275 264 PTAQLF 269 (286)
T ss_pred CHHHHH
Confidence 998874
No 222
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-41 Score=351.50 Aligned_cols=222 Identities=22% Similarity=0.404 Sum_probs=185.1
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC----cccEEEECCEeCC
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT----VGGSITYNDHPYS 224 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~----~~G~I~~~G~~~~ 224 (640)
.|+++||+++| +++.+|+|+||++++||+++|+||||||||||+++|+|... +. .+|+|.++|+++.
T Consensus 7 ~l~~~nl~~~~--------~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~-~~g~i~~~G~i~~~g~~i~ 77 (261)
T PRK14258 7 AIKVNNLSFYY--------DTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE-LESEVRVEGRVEFFNQNIY 77 (261)
T ss_pred eEEEeeEEEEe--------CCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccC-CCCCccccceEEECCEEhh
Confidence 69999999998 23469999999999999999999999999999999999654 32 3799999998863
Q ss_pred ------hhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCH
Q 006571 225 ------KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (640)
Q Consensus 225 ------~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (640)
..+++.++|++|++.+++ +|++||+.+...... ..+..+..+++.++++.+++.+..+.. .+..+..|||
T Consensus 78 ~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LSg 153 (261)
T PRK14258 78 ERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVG--WRPKLEIDDIVESALKDADLWDEIKHK-IHKSALDLSG 153 (261)
T ss_pred ccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchhhhH-hcCCcccCCH
Confidence 134677999999999998 899999998653221 112333456678899999885432211 1234578999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCcHHHhccCEEEEEcC-----C
Q 006571 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGK-----G 372 (640)
Q Consensus 299 GqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~tH~~~~~i~~~~D~i~vL~~-----G 372 (640)
|||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++. ++.++||+|++|++ |
T Consensus 154 Gq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~~~~~~G 232 (261)
T PRK14258 154 GQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH-QVSRLSDFTAFFKGNENRIG 232 (261)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhcCEEEEEccCCCcCc
Confidence 999999999999999999999999999999999999999999875 4899999999975 57789999999999 9
Q ss_pred eEEEecChHHHH
Q 006571 373 SLLYFGKASEAM 384 (640)
Q Consensus 373 ~iv~~G~~~~~~ 384 (640)
++++.|+++++.
T Consensus 233 ~i~~~~~~~~~~ 244 (261)
T PRK14258 233 QLVEFGLTKKIF 244 (261)
T ss_pred eEEEeCCHHHHH
Confidence 999999999974
No 223
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-41 Score=354.04 Aligned_cols=221 Identities=24% Similarity=0.419 Sum_probs=182.5
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC---CCcccEEEECCEeCC
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME---PTVGGSITYNDHPYS 224 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~---~~~~G~I~~~G~~~~ 224 (640)
..|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|.... .+.+|+|.++|.++.
T Consensus 38 ~~l~i~~l~~~~--------~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~ 109 (285)
T PRK14254 38 TVIEARDLNVFY--------GDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVY 109 (285)
T ss_pred ceEEEEEEEEEE--------CCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcc
Confidence 469999999998 245799999999999999999999999999999999996532 146899999999863
Q ss_pred h------hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCH
Q 006571 225 K------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (640)
Q Consensus 225 ~------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (640)
. ..++.++||+|++.+|+. ||.||+.+....+. ... ...++++++++.++|.+...... +..+..|||
T Consensus 110 ~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~i~~~~-~~~~~~LSg 183 (285)
T PRK14254 110 DADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQG---YDG-DIDERVEESLRRAALWDEVKDQL-DSSGLDLSG 183 (285)
T ss_pred ccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcC---CcH-HHHHHHHHHHHHcCCCchhHHHH-hCCcccCCH
Confidence 1 346789999999988885 99999998754321 122 33456888999998853211111 234578999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEE-EEcCCeEEEe
Q 006571 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLI-LLGKGSLLYF 377 (640)
Q Consensus 299 GqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~-vL~~G~iv~~ 377 (640)
||||||+|||||+.+|+||||||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.++|||++ +|++|++++.
T Consensus 184 Ge~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~-~i~~~~dri~v~l~~G~i~~~ 261 (285)
T PRK14254 184 GQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQ-QAARISDKTAVFLTGGELVEF 261 (285)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHhhcCEEEEEeeCCEEEEe
Confidence 999999999999999999999999999999999999999999976 489999999975 4677899975 6799999999
Q ss_pred cChHHHH
Q 006571 378 GKASEAM 384 (640)
Q Consensus 378 G~~~~~~ 384 (640)
|+++++.
T Consensus 262 g~~~~~~ 268 (285)
T PRK14254 262 DDTDKIF 268 (285)
T ss_pred CCHHHHH
Confidence 9988763
No 224
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.9e-42 Score=342.66 Aligned_cols=203 Identities=30% Similarity=0.512 Sum_probs=173.2
Q ss_pred EEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh-----
Q 006571 151 KFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----- 225 (640)
Q Consensus 151 ~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----- 225 (640)
.+ ||+++| +++.+ |+||+|++ |+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 3 ~~-~l~~~~--------~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~ 68 (214)
T cd03297 3 CV-DIEKRL--------PDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEK--PDGGTIVLNGTVLFDSRKKI 68 (214)
T ss_pred ee-eeeEec--------CCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEecccccchh
Confidence 44 888888 23444 99999999 9999999999999999999999653 468999999988641
Q ss_pred ---hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHH
Q 006571 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (640)
Q Consensus 226 ---~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (640)
..++.++|++|++.+++.+|++||+.+..... .....++++.++++.+||.+..+. .+..|||||||
T Consensus 69 ~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~q 138 (214)
T cd03297 69 NLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNR-----YPAQLSGGEKQ 138 (214)
T ss_pred hhhhHhhcEEEEecCCccCCCCCHHHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhc-----CcccCCHHHHH
Confidence 24567999999999999899999998865321 223345678899999999765554 35689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEec
Q 006571 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (640)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (640)
|++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|
T Consensus 139 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 139 RVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLS-EAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHH-HHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999999999865 899999999975 466889999999999998765
No 225
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=5.2e-42 Score=348.99 Aligned_cols=200 Identities=34% Similarity=0.490 Sum_probs=171.4
Q ss_pred ccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC---hhccCcEEEEc-cCCCCCCC
Q 006571 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---KSLKSKIGFVT-QDDVLFPH 243 (640)
Q Consensus 168 ~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~---~~~~~~i~yV~-Q~~~l~~~ 243 (640)
+.+++|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++. ...++.++|++ |++.+++.
T Consensus 32 ~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 109 (236)
T cd03267 32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ--PTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWD 109 (236)
T ss_pred CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEccccchhhcccEEEEcCCccccCCC
Confidence 45679999999999999999999999999999999999653 46899999998753 23467899998 55778888
Q ss_pred CCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 006571 244 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 323 (640)
Q Consensus 244 lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPT 323 (640)
+||+||+.+..... ....++..+++.++++.+||.+..++. +..||||||||++||++|+.+|++|||||||
T Consensus 110 ~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 110 LPVIDSFYLLAAIY---DLPPARFKKRLDELSELLDLEELLDTP-----VRQLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred CcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 99999998865432 123344455678899999998777764 4689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEec
Q 006571 324 SGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (640)
Q Consensus 324 sgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (640)
+|||+.++..+.+.|++++++ ++|||++||++. .+.++||++++|++|++++.|
T Consensus 182 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 182 IGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEecC
Confidence 999999999999999999764 889999999975 567889999999999998765
No 226
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=1.7e-41 Score=347.91 Aligned_cols=221 Identities=25% Similarity=0.344 Sum_probs=181.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++||++.| +++.+|+||||+|++||+++|+||||||||||+++|+|....++.+|+|.++|.++..
T Consensus 7 ~l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~ 78 (252)
T CHL00131 7 ILEIKNLHASV--------NENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEP 78 (252)
T ss_pred eEEEEeEEEEe--------CCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCCh
Confidence 69999999998 2456999999999999999999999999999999999963223568999999998743
Q ss_pred -hccC-cEEEEccCCCCCCCCCHHHHHHHHHhccCC----CCccHHHHHHHHHHHHHHcCCCc-cccccccCccCC-cCC
Q 006571 226 -SLKS-KIGFVTQDDVLFPHLTVKETLTYAALLRLP----NTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVR-GVS 297 (640)
Q Consensus 226 -~~~~-~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~----~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~-~LS 297 (640)
..++ .++|++|++.+++.+|+.+|+.+....... ......+..+++.++++.++|.+ ..++. +. +||
T Consensus 79 ~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~~LS 153 (252)
T CHL00131 79 EERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRN-----VNEGFS 153 (252)
T ss_pred hhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccc-----cccCCC
Confidence 1222 488999999999999999999875432110 01122233456788899999963 44443 33 599
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhc-cCEEEEEcCCeEEE
Q 006571 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHK-FDKLILLGKGSLLY 376 (640)
Q Consensus 298 GGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~-~D~i~vL~~G~iv~ 376 (640)
|||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++.. +... ||++++|++|++++
T Consensus 154 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~-~~~~~~d~i~~l~~G~i~~ 232 (252)
T CHL00131 154 GGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRL-LDYIKPDYVHVMQNGKIIK 232 (252)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-HHhhhCCEEEEEeCCEEEE
Confidence 999999999999999999999999999999999999999999998779999999999653 4455 89999999999999
Q ss_pred ecChHHH
Q 006571 377 FGKASEA 383 (640)
Q Consensus 377 ~G~~~~~ 383 (640)
.|+++.+
T Consensus 233 ~~~~~~~ 239 (252)
T CHL00131 233 TGDAELA 239 (252)
T ss_pred ecChhhh
Confidence 9999844
No 227
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=1.5e-41 Score=349.33 Aligned_cols=217 Identities=21% Similarity=0.355 Sum_probs=181.2
Q ss_pred CeeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---CcccEEEECCEeC
Q 006571 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPY 223 (640)
Q Consensus 147 ~~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~---~~~G~I~~~G~~~ 223 (640)
|..|+++||+++| ++++|+|+||+|++||+++|+||||||||||+++|+|... | +++|+|.++|+++
T Consensus 2 ~~~l~~~~l~~~~---------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-~~~~~~~G~i~~~g~~i 71 (254)
T PRK10418 2 PQQIELRNIALQA---------AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILP-AGVRQTAGRVLLDGKPV 71 (254)
T ss_pred CcEEEEeCeEEEe---------ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCCcCCEEEECCeec
Confidence 3469999999987 2369999999999999999999999999999999999654 3 1689999999987
Q ss_pred Ch-h-ccCcEEEEccCCC--CCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCcc---ccccccCccCCcC
Q 006571 224 SK-S-LKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC---QDTMIGGSFVRGV 296 (640)
Q Consensus 224 ~~-~-~~~~i~yV~Q~~~--l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~---~~t~vg~~~~~~L 296 (640)
.. . .++.++||+|++. +.+.+|+.+|+.+.+.... ... .++++.++++.++|.+. .++ .+..|
T Consensus 72 ~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~l~~~~l~~~~~~~~~-----~~~~L 141 (254)
T PRK10418 72 APCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALG---KPA--DDATLTAALEAVGLENAARVLKL-----YPFEM 141 (254)
T ss_pred cccccccceEEEEecCCccccCccccHHHHHHHHHHHcC---CCh--HHHHHHHHHHHcCCCChhhhhhc-----CCccc
Confidence 53 2 2357999999974 4566799999877543211 111 23567889999999752 333 45789
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEE
Q 006571 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (640)
Q Consensus 297 SGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv 375 (640)
||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.||++++|++|+++
T Consensus 142 S~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~-~~~~~~d~v~~l~~G~i~ 220 (254)
T PRK10418 142 SGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG-VVARLADDVAVMSHGRIV 220 (254)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999764 899999999975 466789999999999999
Q ss_pred EecChHHHH
Q 006571 376 YFGKASEAM 384 (640)
Q Consensus 376 ~~G~~~~~~ 384 (640)
+.|+++++.
T Consensus 221 ~~~~~~~~~ 229 (254)
T PRK10418 221 EQGDVETLF 229 (254)
T ss_pred EecCHHHHh
Confidence 999988874
No 228
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=5.1e-43 Score=330.38 Aligned_cols=218 Identities=29% Similarity=0.504 Sum_probs=193.3
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC----
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~---- 224 (640)
.|+++|+.++| +...+|++||++.+.|+++.|+|.|||||||+|+||. .+.. |..|.|.+||+.+.
T Consensus 6 ~l~v~dlHK~~--------G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN-~LE~-P~~G~I~v~geei~~k~~ 75 (256)
T COG4598 6 ALEVEDLHKRY--------GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCIN-FLEK-PSAGSIRVNGEEIRLKRD 75 (256)
T ss_pred ceehhHHHhhc--------ccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHH-hhcC-CCCceEEECCeEEEeeeC
Confidence 58899999988 5678999999999999999999999999999999998 4544 56899999998763
Q ss_pred -------------hhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCc
Q 006571 225 -------------KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGS 291 (640)
Q Consensus 225 -------------~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~ 291 (640)
+.+|.+.|+|||+.+|++++||.||+.-+...-+ ..++.+..++++.+|..+||.+..|.
T Consensus 76 ~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVL--g~~k~ea~e~Ae~~L~kVGi~ek~~~----- 148 (256)
T COG4598 76 KDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVL--GVSKAEAIERAEKYLAKVGIAEKADA----- 148 (256)
T ss_pred CCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhh--cCCHHHHHHHHHHHHHHhCchhhhhc-----
Confidence 1246789999999999999999999986532222 35678888899999999999887774
Q ss_pred cCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcC
Q 006571 292 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (640)
Q Consensus 292 ~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~ 371 (640)
++..|||||+||++|||||+.+|+++++|||||+|||+-.-++++.+++|+++|+|.+++||.... ..+...+|++|++
T Consensus 149 YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~F-AR~Vss~v~fLh~ 227 (256)
T COG4598 149 YPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGF-ARDVSSHVIFLHQ 227 (256)
T ss_pred CccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhH-HHhhhhheEEeec
Confidence 567899999999999999999999999999999999999999999999999999999999999654 5677899999999
Q ss_pred CeEEEecChHHHH
Q 006571 372 GSLLYFGKASEAM 384 (640)
Q Consensus 372 G~iv~~G~~~~~~ 384 (640)
|.|-+.|+|+++.
T Consensus 228 G~iEE~G~P~qvf 240 (256)
T COG4598 228 GKIEEEGPPEQVF 240 (256)
T ss_pred ceecccCChHHHh
Confidence 9999999999984
No 229
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-41 Score=351.88 Aligned_cols=221 Identities=22% Similarity=0.356 Sum_probs=181.4
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-C--CcccEEEECCEeCC
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYS 224 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~-~--~~~G~I~~~G~~~~ 224 (640)
..|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|.... + +.+|+|.++|+++.
T Consensus 19 ~~l~~~nl~~~~--------~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~ 90 (274)
T PRK14265 19 SVFEVEGVKVFY--------GGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIY 90 (274)
T ss_pred ceEEEeeEEEEe--------CCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecc
Confidence 479999999998 345799999999999999999999999999999999996532 1 25899999999873
Q ss_pred h------hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCH
Q 006571 225 K------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (640)
Q Consensus 225 ~------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (640)
. .+++.|+|++|++.+++. ||.||+.++...+. .. ...++.+.+.++.+++.+..... -+..+..|||
T Consensus 91 ~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LSg 164 (274)
T PRK14265 91 DSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANG---YK-GNLDELVEDSLRRAAIWEEVKDK-LKEKGTALSG 164 (274)
T ss_pred cccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcC---ch-HHHHHHHHHHHHHcccchhhHHH-hcCCcccCCH
Confidence 1 346789999999998875 99999998653221 11 12234456677777764221111 1234578999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEc--------
Q 006571 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG-------- 370 (640)
Q Consensus 299 GqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~-------- 370 (640)
||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.++||++++|+
T Consensus 165 Gq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~~~~~~~~ 242 (274)
T PRK14265 165 GQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQ-QASRVADWTAFFNTEIDEYGK 242 (274)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEecccccccc
Confidence 999999999999999999999999999999999999999999975 789999999975 4778999999997
Q ss_pred -CCeEEEecChHHHH
Q 006571 371 -KGSLLYFGKASEAM 384 (640)
Q Consensus 371 -~G~iv~~G~~~~~~ 384 (640)
+|++++.|+++++.
T Consensus 243 ~~G~~~~~g~~~~~~ 257 (274)
T PRK14265 243 RRGKLVEFSPTEQMF 257 (274)
T ss_pred cCceEEEeCCHHHHH
Confidence 89999999999874
No 230
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=7.9e-42 Score=339.73 Aligned_cols=198 Identities=28% Similarity=0.504 Sum_probs=169.6
Q ss_pred EEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC---h---
Q 006571 152 FTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---K--- 225 (640)
Q Consensus 152 ~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~---~--- 225 (640)
++||++.| +++++|+|+||++++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++. .
T Consensus 1 i~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~ 70 (206)
T TIGR03608 1 LKNISKKF--------GDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK--FDSGQVYLNGKETPPLNSKKA 70 (206)
T ss_pred CcceEEEE--------CCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccchhhH
Confidence 36888887 34579999999999999999999999999999999999653 46899999999853 1
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHH
Q 006571 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (640)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (640)
..++.++|++|++.+++.+|++||+.+..... .....+..+++.++++.+||.+..++. +.+||||||||
T Consensus 71 ~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS~G~~qr 142 (206)
T TIGR03608 71 SKFRREKLGYLFQNFALIENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQK-----IYELSGGEQQR 142 (206)
T ss_pred HHHHHhCeeEEecchhhccCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCC-----hhhCCHHHHHH
Confidence 23568999999999999899999999865432 223444566788999999997766654 46899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEE
Q 006571 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 369 (640)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL 369 (640)
++|||||+.+|++|||||||+|||+.++..+.+.|+++.++|+|||+++|++. ....||++++|
T Consensus 143 ~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~--~~~~~d~i~~l 206 (206)
T TIGR03608 143 VALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE--VAKQADRVIEL 206 (206)
T ss_pred HHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHhhcCEEEeC
Confidence 99999999999999999999999999999999999999877899999999975 34689999875
No 231
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=1.1e-41 Score=383.42 Aligned_cols=213 Identities=23% Similarity=0.421 Sum_probs=186.2
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (640)
..|+++||+++| +++.+|+|+||+|++|++++|+||||||||||||+|+|.+. +.+|+|.++|+++..
T Consensus 10 ~~l~~~~l~~~~--------~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~ 79 (510)
T PRK15439 10 PLLCARSISKQY--------SGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP--PDSGTLEIGGNPCARLT 79 (510)
T ss_pred ceEEEEeEEEEe--------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCCCC
Confidence 369999999998 34579999999999999999999999999999999999653 568999999998742
Q ss_pred --h-ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHH
Q 006571 226 --S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (640)
Q Consensus 226 --~-~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (640)
. .++.+|||+|++.+++.+||+||+.++... ..+.++++.++++.+||.+..+.. +..|||||||
T Consensus 80 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~-------~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~q 147 (510)
T PRK15439 80 PAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPK-------RQASMQKMKQLLAALGCQLDLDSS-----AGSLEVADRQ 147 (510)
T ss_pred HHHHHhCCEEEEeccCccCCCCcHHHHhhccccc-------chHHHHHHHHHHHHcCCCccccCC-----hhhCCHHHHH
Confidence 1 235699999999999999999999885321 123456688899999998766654 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHH
Q 006571 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (640)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (640)
||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||+|++|++|++++.|++++
T Consensus 148 rv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (510)
T PRK15439 148 IVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLP-EIRQLADRISVMRDGTIALSGKTAD 226 (510)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecChHH
Confidence 999999999999999999999999999999999999999888999999999965 4678899999999999999999876
Q ss_pred H
Q 006571 383 A 383 (640)
Q Consensus 383 ~ 383 (640)
+
T Consensus 227 ~ 227 (510)
T PRK15439 227 L 227 (510)
T ss_pred c
Confidence 5
No 232
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=1.3e-41 Score=352.50 Aligned_cols=226 Identities=25% Similarity=0.455 Sum_probs=185.8
Q ss_pred eEEEEeEEEEEeeccc-cccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 006571 149 YLKFTDVTYKVILKGM-TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~-~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (640)
.|+++||+++|..... ....++.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~sG~i~~~g~~~~~~~ 80 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES--PSQGNVSWRGEPLAKLN 80 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEeccccC
Confidence 5899999999831000 00013679999999999999999999999999999999999643 468999999998642
Q ss_pred -----hccCcEEEEccCC--CCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCccCCcCC
Q 006571 226 -----SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVS 297 (640)
Q Consensus 226 -----~~~~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LS 297 (640)
.+++.++|++|++ .+++..|+.||+.+...... .....+...+++++++.+|+. +..++ .+..||
T Consensus 81 ~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~~LS 153 (268)
T PRK10419 81 RAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLL--SLDKAERLARASEMLRAVDLDDSVLDK-----RPPQLS 153 (268)
T ss_pred hhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhc--cCCHHHHHHHHHHHHHHcCCChhHhhC-----CCccCC
Confidence 2467899999997 46677899999987542111 123444556789999999996 34444 456899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEE
Q 006571 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (640)
Q Consensus 298 GGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (640)
||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++. .+.++||++++|++|++++
T Consensus 154 ~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~G~i~~ 232 (268)
T PRK10419 154 GGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQRVMVMDNGQIVE 232 (268)
T ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCEEEEEECCEEee
Confidence 99999999999999999999999999999999999999999999765 899999999975 4667899999999999999
Q ss_pred ecChHHHH
Q 006571 377 FGKASEAM 384 (640)
Q Consensus 377 ~G~~~~~~ 384 (640)
.|+++++.
T Consensus 233 ~g~~~~~~ 240 (268)
T PRK10419 233 TQPVGDKL 240 (268)
T ss_pred eCChhhcc
Confidence 99998865
No 233
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=1.5e-41 Score=335.80 Aligned_cols=191 Identities=52% Similarity=0.894 Sum_probs=164.8
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh-hc
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-SL 227 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-~~ 227 (640)
.|+++||+++|.... ...++++|+|+||++++||+++|+||||||||||+++|+|....++.+|+|.++|+++.. ..
T Consensus 3 ~l~~~~ls~~~~~~~--~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~ 80 (194)
T cd03213 3 TLSFRNLTVTVKSSP--SKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSF 80 (194)
T ss_pred EEEEEeeEEEEecCC--CcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhh
Confidence 589999999983210 001367999999999999999999999999999999999965112468999999998864 45
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHH
Q 006571 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (640)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (640)
++.++|++|++.+++.+|++||+.+.... ..||||||||++||
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~~~i~~~~~~-------------------------------------~~LS~G~~qrv~la 123 (194)
T cd03213 81 RKIIGYVPQDDILHPTLTVRETLMFAAKL-------------------------------------RGLSGGERKRVSIA 123 (194)
T ss_pred hheEEEccCcccCCCCCcHHHHHHHHHHh-------------------------------------ccCCHHHHHHHHHH
Confidence 67899999999999999999999864210 05999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEec
Q 006571 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (640)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (640)
|||+.+|+++||||||+|||+.++..+.+.|+++.++|+|+|+++|++..++.+.||++++|++|++++.|
T Consensus 124 ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 124 LELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999999998779999999999865577889999999999998764
No 234
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=1.4e-41 Score=341.97 Aligned_cols=210 Identities=30% Similarity=0.508 Sum_probs=179.2
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (640)
|+++||++.|..+ .+.+.+|+|+||++++|++++|+||||||||||+++|+|.+ ++.+|+|.++|+++..
T Consensus 2 l~~~~l~~~~~~~----~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~--~~~~G~i~~~g~~~~~~~~~ 75 (220)
T TIGR02982 2 ISIRNLNHYYGHG----SLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLR--SVQEGSLKVLGQELYGASEK 75 (220)
T ss_pred EEEEEEEEEccCC----CcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCeEEEECCEEhHhcCHh
Confidence 7899999998311 11367999999999999999999999999999999999964 3568999999998742
Q ss_pred ---hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHH
Q 006571 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (640)
Q Consensus 226 ---~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (640)
..++.++|++|++.+++.+|+.||+.++..... ....++..+++.++++.+||.+..++. ++.|||||||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS~G~~q 148 (220)
T TIGR02982 76 ELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHLDYY-----PHNLSGGQKQ 148 (220)
T ss_pred HHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhhhcC-----hhhCCHHHHH
Confidence 245789999999999998999999998754321 133445566789999999997766653 4789999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCcHHHhccCEEEEEcCCeE
Q 006571 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (640)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~i 374 (640)
|++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ .++|||+++|++. +.++||+|++|++|++
T Consensus 149 rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 149 RVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999986 4899999999975 4579999999999986
No 235
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-41 Score=346.49 Aligned_cols=222 Identities=22% Similarity=0.393 Sum_probs=184.8
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-C--CcccEEEECCEeCCh
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYSK 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~-~--~~~G~I~~~G~~~~~ 225 (640)
.|+++||++.| +++++|+|+||+|++||+++|+||||||||||+++|+|.... + +.+|+|.+||.++..
T Consensus 3 ~l~~~~v~~~~--------~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~ 74 (250)
T PRK14266 3 RIEVENLNTYF--------DDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYD 74 (250)
T ss_pred EEEEEeEEEEe--------CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEccc
Confidence 48899999998 345799999999999999999999999999999999996431 2 368999999998742
Q ss_pred ------hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHH
Q 006571 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (640)
Q Consensus 226 ------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (640)
..++.++|++|++.+|+. |+.||+.++.... .....+..++++.++++.++|.+...... +..+..||||
T Consensus 75 ~~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~G 150 (250)
T PRK14266 75 PAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIH--GEDDEDFIEERVEESLKAAALWDEVKDKL-DKSALGLSGG 150 (250)
T ss_pred ccccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhc--CCCCHHHHHHHHHHHHHHcCCchhHHHHH-hCCcccCCHH
Confidence 346789999999999985 9999999865322 11123344567888899988854322111 3346789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecC
Q 006571 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (640)
Q Consensus 300 qrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (640)
||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. ++...||++++|++|++++.|+
T Consensus 151 q~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~~~~~~~i~~l~~G~i~~~g~ 228 (250)
T PRK14266 151 QQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNMQ-QATRVSKYTSFFLNGEIIESGL 228 (250)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCHH-HHHhhcCEEEEEECCeEEEeCC
Confidence 99999999999999999999999999999999999999999965 889999999975 5778899999999999999999
Q ss_pred hHHHH
Q 006571 380 ASEAM 384 (640)
Q Consensus 380 ~~~~~ 384 (640)
++++.
T Consensus 229 ~~~~~ 233 (250)
T PRK14266 229 TDQIF 233 (250)
T ss_pred HHHHH
Confidence 98874
No 236
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-41 Score=348.98 Aligned_cols=222 Identities=20% Similarity=0.322 Sum_probs=185.3
Q ss_pred CeeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---CcccEEEECCEeC
Q 006571 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPY 223 (640)
Q Consensus 147 ~~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~---~~~G~I~~~G~~~ 223 (640)
++.+.+++++++| +++.+|+|+||+|++||+++|+||||||||||+++|+|.+.+. +.+|+|+++|+++
T Consensus 6 ~~~~~~~~~~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i 77 (261)
T PRK14263 6 PIVMDCKLDKIFY--------GNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDV 77 (261)
T ss_pred CceEEEEeEEEEe--------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEec
Confidence 4568999999987 3567999999999999999999999999999999999965420 2589999999987
Q ss_pred Ch------hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCC
Q 006571 224 SK------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (640)
Q Consensus 224 ~~------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LS 297 (640)
.. .+++.++|++|++.++ .+|+.||+.++...+. . ..+..+++.++++.++|.+..+... +..++.||
T Consensus 78 ~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~i~~~~-~~~~~~LS 151 (261)
T PRK14263 78 YGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNR---Y-KGDLGDRVKHALQGAALWDEVKDKL-KVSGLSLS 151 (261)
T ss_pred cccccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcC---c-hHHHHHHHHHHHHHcCCchhhhhhh-hCCcccCC
Confidence 32 3467799999999988 4899999998764321 1 2233457888999999864332222 23457899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEc-------
Q 006571 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG------- 370 (640)
Q Consensus 298 GGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~------- 370 (640)
||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ ++|||+++|++. ++.++||+|++|+
T Consensus 152 ~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~-~~tii~isH~~~-~i~~~~d~v~~l~~~~~~~~ 229 (261)
T PRK14263 152 GGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKK-DYTIALVTHNMQ-QAIRVADTTAFFSVDISQGT 229 (261)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEeccccccc
Confidence 9999999999999999999999999999999999999999999964 789999999975 4778999999995
Q ss_pred -CCeEEEecChHHHH
Q 006571 371 -KGSLLYFGKASEAM 384 (640)
Q Consensus 371 -~G~iv~~G~~~~~~ 384 (640)
+|++++.|+++++.
T Consensus 230 ~~G~i~~~g~~~~~~ 244 (261)
T PRK14263 230 RTGYLVEMGPTAQIF 244 (261)
T ss_pred CCceEEEeCCHHHHH
Confidence 89999999998875
No 237
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.7e-42 Score=348.15 Aligned_cols=214 Identities=32% Similarity=0.516 Sum_probs=174.0
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (640)
|+++|++++|. ..++++|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 1 i~~~~l~~~~~------~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~ 72 (234)
T cd03251 1 VEFKNVTFRYP------GDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD--VDSGRILIDGHDVRDYTLA 72 (234)
T ss_pred CEEEEEEEEeC------CCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc--CCCCEEEECCEEhhhCCHH
Confidence 47899999982 112379999999999999999999999999999999999653 568999999988642
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHH-----HHHHHHHHHc--CCCccccccccCccCCcCCH
Q 006571 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKE-----KRAIDVINEL--GLERCQDTMIGGSFVRGVSG 298 (640)
Q Consensus 226 ~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~~t~vg~~~~~~LSG 298 (640)
..++.++|++|++.+++ .||+||+.+.... ....... ..+.++++.+ ++.+..+ ..+..|||
T Consensus 73 ~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-----~~~~~LS~ 141 (234)
T cd03251 73 SLRRQIGLVSQDVFLFN-DTVAENIAYGRPG-----ATREEVEEAARAANAHEFIMELPEGYDTVIG-----ERGVKLSG 141 (234)
T ss_pred HHHhhEEEeCCCCeecc-ccHHHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhcccCcceeec-----cCCCcCCH
Confidence 34677999999999887 6999999875321 1111111 1234555555 4443333 34578999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEec
Q 006571 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (640)
Q Consensus 299 GqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (640)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ ++|||++||++.. +. .||++++|++|++++.|
T Consensus 142 G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~~-~~d~v~~l~~G~i~~~~ 218 (234)
T cd03251 142 GQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMK-NRTTFVIAHRLST-IE-NADRIVVLEDGKIVERG 218 (234)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEecCHHH-Hh-hCCEEEEecCCeEeeeC
Confidence 999999999999999999999999999999999999999999864 8999999999764 54 49999999999999999
Q ss_pred ChHHHHH
Q 006571 379 KASEAMA 385 (640)
Q Consensus 379 ~~~~~~~ 385 (640)
+++++..
T Consensus 219 ~~~~~~~ 225 (234)
T cd03251 219 THEELLA 225 (234)
T ss_pred CHHHHHH
Confidence 9888754
No 238
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=9.4e-42 Score=374.29 Aligned_cols=228 Identities=26% Similarity=0.422 Sum_probs=194.9
Q ss_pred eeEEEEeEEEEEeeccc---cccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC
Q 006571 148 IYLKFTDVTYKVILKGM---TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS 224 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~---~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~ 224 (640)
+.++++||++.|..++. ...+...+++||||++++||++||||+||||||||.|+|+|... +.+|+|.++|.+..
T Consensus 279 ~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~--P~~G~i~~~g~~~~ 356 (539)
T COG1123 279 PLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLP--PSSGSIIFDGQDLD 356 (539)
T ss_pred ceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEEeCcccc
Confidence 46899999999965321 11234679999999999999999999999999999999999653 47999999998731
Q ss_pred ------hhccCcEEEEccCC--CCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcC
Q 006571 225 ------KSLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296 (640)
Q Consensus 225 ------~~~~~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~L 296 (640)
...|+++-+||||| .|.|.+||+++|......... ....++++++.++++.+||+.. ..++++++|
T Consensus 357 ~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~--~~~~~~~~rv~~ll~~VgL~~~----~l~ryP~el 430 (539)
T COG1123 357 LTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGG--GSGAERRARVAELLELVGLPPE----FLDRYPHEL 430 (539)
T ss_pred cccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcc--cchHHHHHHHHHHHHHcCCCHH----HHhcCchhc
Confidence 23567888899886 689999999999987665432 2356677889999999999842 345678999
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEE
Q 006571 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (640)
Q Consensus 297 SGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv 375 (640)
|||||||++|||||+.+|++|++|||||+||+..+..|+++|+++.++ |.|.|+||||+. .+..+||||++|++|+||
T Consensus 431 SGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~-vV~~i~drv~vm~~G~iV 509 (539)
T COG1123 431 SGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLA-VVRYIADRVAVMYDGRIV 509 (539)
T ss_pred CcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHhhCceEEEEECCeEE
Confidence 999999999999999999999999999999999999999999999865 999999999976 578899999999999999
Q ss_pred EecChHHHH
Q 006571 376 YFGKASEAM 384 (640)
Q Consensus 376 ~~G~~~~~~ 384 (640)
+.|+.+++.
T Consensus 510 E~G~~~~v~ 518 (539)
T COG1123 510 EEGPTEKVF 518 (539)
T ss_pred EeCCHHHHh
Confidence 999888875
No 239
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-43 Score=372.34 Aligned_cols=346 Identities=27% Similarity=0.356 Sum_probs=239.5
Q ss_pred HHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCC-----------CcCCCCCcccee--eec----ccccccee
Q 006571 19 VETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASP-----------GRAGASGRNTHI--RKS----RSAQLKLE 81 (640)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~--~~~----~~~~~~~~ 81 (640)
.++.+.|..|+-+-|||+-|+.+.-+..+|..-+++.-.. ...|+.-.++.- ... .-.+..++
T Consensus 119 s~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~T 198 (497)
T COG5265 119 SDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLT 198 (497)
T ss_pred hHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCC
Confidence 4556677888888899999999888888887655422111 111111111110 000 00111222
Q ss_pred cchhc-hhhhHhhhhhhhhhhhhccccCCCCccccccCCCCCCCCCccccccccCCCCCCCCCCCCCeeEEEEeEEEEEe
Q 006571 82 LDEVS-SGAALSRASSASLGLSFSFTGFTMPPDEIADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVI 160 (640)
Q Consensus 82 ~~~~~-~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vs~~~~ 160 (640)
+.++- .-..+...+.-..+..+++ .++-+.-...+.++...+.+.++...+...+- .|..+..+.|+||+|.|.
T Consensus 199 vgD~V~~Nall~qls~Plnflg~~Y--rei~q~ltdme~mfdLl~~~~~v~d~pda~~L---~~~~~g~v~F~~V~F~y~ 273 (497)
T COG5265 199 VGDLVNVNALLFQLSIPLNFLGFSY--REIRQALTDMEKMFDLLDVEAEVSDAPDAPPL---WPVRLGAVAFINVSFAYD 273 (497)
T ss_pred chhHHhHHHHHhhhhhhhhhhHHHH--HHHHHhhhhHHHHHHhhccchhhccCCCCccc---cccccceEEEEEEEeecc
Confidence 22211 1111111111111222222 12222222333334444444333332221111 112345699999999983
Q ss_pred eccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC----hhccCcEEEEcc
Q 006571 161 LKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSLKSKIGFVTQ 236 (640)
Q Consensus 161 ~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~----~~~~~~i~yV~Q 236 (640)
+.+++|+++||++++|+.+||+||||+||||++++|- |++++ .+|.|.+||++++ +.+|+-||.|||
T Consensus 274 -------~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllf-RFyD~-~sG~I~id~qdir~vtq~slR~aIg~VPQ 344 (497)
T COG5265 274 -------PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLF-RFYDV-NSGSITIDGQDIRDVTQQSLRRAIGIVPQ 344 (497)
T ss_pred -------ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHH-HHhCC-cCceEEEcchhHHHhHHHHHHHHhCcCcc
Confidence 5789999999999999999999999999999999999 77875 4899999999986 367899999999
Q ss_pred CCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCE
Q 006571 237 DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSL 316 (640)
Q Consensus 237 ~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~i 316 (640)
|..||.+ |+..|+.|+..-.....+....+.+.+.++++. +++++++.||.++.+ |||||||||+|||+++.+|+|
T Consensus 345 DtvLFND-ti~yni~ygr~~at~eev~aaa~~aqi~~fi~~--lP~gy~t~Vgerglk-lSggekqrvaiar~ilk~p~i 420 (497)
T COG5265 345 DTVLFND-TIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQS--LPEGYDTGVGERGLK-LSGGEKQRVAIARTILKNPPI 420 (497)
T ss_pred cceehhh-hHHHHHhccCccccHHHHHHHHHHhhhhHHHHh--Cchhhhcccchheee-ccCchHHHHHHHHHHhcCCCE
Confidence 9999965 999999997432111111122233445566665 599999999987665 999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHH
Q 006571 317 LFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (640)
Q Consensus 317 LlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (640)
|+|||.||+||..++++|...|+++. .|+|.+++.|++++ + --+|.|+||++|+|++.|+|+++++
T Consensus 421 l~~deatsaldt~te~~iq~~l~~~~-~~rttlviahrlst-i-~~adeiivl~~g~i~erg~h~~ll~ 486 (497)
T COG5265 421 LILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHRLST-I-IDADEIIVLDNGRIVERGTHEELLA 486 (497)
T ss_pred EEEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEeehhhh-c-cCCceEEEeeCCEEEecCcHHHHHH
Confidence 99999999999999999999999987 49999999999986 3 4699999999999999999999986
No 240
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-41 Score=350.75 Aligned_cols=220 Identities=21% Similarity=0.378 Sum_probs=181.5
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-C--CcccEEEECCEeCC-
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYS- 224 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~-~--~~~G~I~~~G~~~~- 224 (640)
.|+++||+++| +++++|+|+||+|++||+++|+||||||||||+++|+|.... + +.+|+|.++|+++.
T Consensus 10 ~l~i~~v~~~~--------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 81 (264)
T PRK14243 10 VLRTENLNVYY--------GSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYA 81 (264)
T ss_pred EEEEeeeEEEE--------CCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccc
Confidence 69999999998 245799999999999999999999999999999999996431 1 35899999998863
Q ss_pred -----hhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHH
Q 006571 225 -----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (640)
Q Consensus 225 -----~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (640)
..+++.++||+|++.+++ .||.||+.++...+ ... ....+++.++++.+++.+..+.. -+..+..||||
T Consensus 82 ~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~-~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LSgG 155 (264)
T PRK14243 82 PDVDPVEVRRRIGMVFQKPNPFP-KSIYDNIAYGARIN---GYK-GDMDELVERSLRQAALWDEVKDK-LKQSGLSLSGG 155 (264)
T ss_pred cccChHHHhhhEEEEccCCcccc-ccHHHHHHhhhhhc---Ccc-hHHHHHHHHHHHHhCchhhHHHH-hcCCcccCCHH
Confidence 234678999999999887 49999999875432 111 22344566777777774321111 12345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEc---------
Q 006571 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG--------- 370 (640)
Q Consensus 300 qrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~--------- 370 (640)
||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.++||+|++|+
T Consensus 156 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~-~~~~~~d~v~~l~~~~~~~~~~ 233 (264)
T PRK14243 156 QQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQ-QAARVSDMTAFFNVELTEGGGR 233 (264)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEeccccccccc
Confidence 99999999999999999999999999999999999999999976 589999999965 5789999999998
Q ss_pred CCeEEEecChHHHH
Q 006571 371 KGSLLYFGKASEAM 384 (640)
Q Consensus 371 ~G~iv~~G~~~~~~ 384 (640)
+|++++.|+++++.
T Consensus 234 ~g~i~~~~~~~~~~ 247 (264)
T PRK14243 234 YGYLVEFDRTEKIF 247 (264)
T ss_pred CceEEEeCCHHHHH
Confidence 79999999998874
No 241
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=5.5e-43 Score=434.72 Aligned_cols=215 Identities=23% Similarity=0.341 Sum_probs=182.2
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (640)
..|+|+||+|+|+. +.+++|+||||+|+|||.+||+|+||||||||+++|.| +++| .+|+|.+||.|+++
T Consensus 1283 g~I~f~nVsf~Y~~------~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~r-l~~~-~~G~I~IdG~dI~~i~ 1354 (1522)
T TIGR00957 1283 GRVEFRNYCLRYRE------DLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFR-INES-AEGEIIIDGLNIAKIG 1354 (1522)
T ss_pred CcEEEEEEEEEeCC------CCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhc-CccC-CCCeEEECCEEccccC
Confidence 46999999999931 23479999999999999999999999999999999996 5554 58999999999863
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcC-------CCccccccccCccCCcC
Q 006571 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-------LERCQDTMIGGSFVRGV 296 (640)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~t~vg~~~~~~L 296 (640)
.+|++|+|||||+.+|++ |++|||.... ..++++ +.++++..+ ++++.||.+|.. ...|
T Consensus 1355 ~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~------~~sdee----i~~al~~a~l~~~I~~lp~GLdt~v~e~-G~~L 1422 (1522)
T TIGR00957 1355 LHDLRFKITIIPQDPVLFSG-SLRMNLDPFS------QYSDEE----VWWALELAHLKTFVSALPDKLDHECAEG-GENL 1422 (1522)
T ss_pred HHHHHhcCeEECCCCcccCc-cHHHHcCccc------CCCHHH----HHHHHHHcCcHHHHhhCccCCCceecCC-CCcC
Confidence 679999999999999986 9999997321 123333 333333333 456789999764 4569
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEE
Q 006571 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (640)
Q Consensus 297 SGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (640)
|||||||++|||||+++|+||+||||||+||+++...|.+.|++.. +++|||+|+|+++. ...||||++|++|+|++
T Consensus 1423 SgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~t--i~~~DrIlVld~G~IvE 1499 (1522)
T TIGR00957 1423 SVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLNT--IMDYTRVIVLDKGEVAE 1499 (1522)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH--HHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999865 48999999999865 46799999999999999
Q ss_pred ecChHHHHH
Q 006571 377 FGKASEAMA 385 (640)
Q Consensus 377 ~G~~~~~~~ 385 (640)
.|+|+++++
T Consensus 1500 ~G~~~eLl~ 1508 (1522)
T TIGR00957 1500 FGAPSNLLQ 1508 (1522)
T ss_pred ECCHHHHHh
Confidence 999999975
No 242
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=8.4e-42 Score=346.19 Aligned_cols=201 Identities=31% Similarity=0.468 Sum_probs=171.0
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHH
Q 006571 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTY 252 (640)
Q Consensus 173 L~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~~ 252 (640)
|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++... ....+|++|++.+++.+||.||+.+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~-~~~~~~v~q~~~l~~~~tv~e~l~~ 77 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ--PTSGGVILEGKQITEP-GPDRMVVFQNYSLLPWLTVRENIAL 77 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCC-ChhheEEecCcccCCCCCHHHHHHH
Confidence 589999999999999999999999999999999653 5689999999987532 2235899999999999999999998
Q ss_pred HHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 006571 253 AALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTAL 332 (640)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~ 332 (640)
+.....+ .....+..+++.++++.+||.+..++. +..||||||||++|||+|+.+|++|||||||+|||+.++.
T Consensus 78 ~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~ 151 (230)
T TIGR01184 78 AVDRVLP-DLSKSERRAIVEEHIALVGLTEAADKR-----PGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRG 151 (230)
T ss_pred HHHhccc-CCCHHHHHHHHHHHHHHcCCHHHHcCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHH
Confidence 6421111 233444556788999999998766654 4689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHH
Q 006571 333 RIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (640)
Q Consensus 333 ~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (640)
.+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|+..++
T Consensus 152 ~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 152 NLQEELMQIWEEHRVTVLMVTHDVD-EALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCCcEecccCceec
Confidence 999999999764 899999999975 47788999999999999998866543
No 243
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.4e-41 Score=372.82 Aligned_cols=228 Identities=27% Similarity=0.443 Sum_probs=197.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--cccEEEECCEeCCh-
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT--VGGSITYNDHPYSK- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~--~~G~I~~~G~~~~~- 225 (640)
.|+++|++..|... .+...+++||||+|.+||++||+|.|||||||+.++|.|.+..+. .+|+|.++|+++..
T Consensus 5 lL~V~nL~v~~~~~----~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l 80 (539)
T COG1123 5 LLEVENLTVEFATD----GGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGL 80 (539)
T ss_pred eEEEeceEEEEecC----CcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcC
Confidence 69999999998542 233579999999999999999999999999999999999765431 47999999997631
Q ss_pred ------h-ccCcEEEEccCC--CCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcC
Q 006571 226 ------S-LKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296 (640)
Q Consensus 226 ------~-~~~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~L 296 (640)
. ..++|+||||++ .+-|-+||.+.|.-....+.. .+.++.++++.++++.+||++.... +.++++|
T Consensus 81 ~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~--~~~~ea~~~a~elL~~Vgl~~~~~~---~~yPheL 155 (539)
T COG1123 81 SEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGK--GSRAEARKRAVELLEQVGLPDPERR---DRYPHQL 155 (539)
T ss_pred CHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHcCCCChhhh---ccCCccc
Confidence 1 236799999996 467778999999877665532 3477888899999999999876554 5689999
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCcHHHhccCEEEEEcCCeEE
Q 006571 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (640)
Q Consensus 297 SGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv 375 (640)
||||||||.||+||+.+|++||+||||++||+.++.+|+++|+++.+ .|.++|+||||+. .+.++||||+||++|+++
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~-Vva~~aDrv~Vm~~G~iV 234 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLG-VVAELADRVVVMYKGEIV 234 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHH-HHHHhcCeEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999985 5999999999976 578899999999999999
Q ss_pred EecChHHHHHH
Q 006571 376 YFGKASEAMAY 386 (640)
Q Consensus 376 ~~G~~~~~~~~ 386 (640)
+.|++++++.-
T Consensus 235 E~G~~~~i~~~ 245 (539)
T COG1123 235 ETGPTEEILSN 245 (539)
T ss_pred EecCHHHHHhc
Confidence 99999999753
No 244
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=3.7e-41 Score=344.54 Aligned_cols=227 Identities=27% Similarity=0.335 Sum_probs=180.3
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (640)
|+++||+++| +++++|+|+||+|++|++++|+||||||||||+++|+|....++.+|+|.++|.++..
T Consensus 2 i~~~nl~~~~--------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~ 73 (248)
T PRK09580 2 LSIKDLHVSV--------EDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPE 73 (248)
T ss_pred eEEEEEEEEe--------CCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHH
Confidence 7899999998 2457999999999999999999999999999999999964213568999999987642
Q ss_pred hc-cCcEEEEccCCCCCCCCCHHHHHHHHHhc-cC--C-CCccHHHHHHHHHHHHHHcCCCc-cccccccCccCCcCCHH
Q 006571 226 SL-KSKIGFVTQDDVLFPHLTVKETLTYAALL-RL--P-NTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGG 299 (640)
Q Consensus 226 ~~-~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~-~~--~-~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~LSGG 299 (640)
.. ++.++|++|++.+++.+|+.+++.+.... +. . .........+.+++.++.+++++ ..++.+ .+.||||
T Consensus 74 ~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----~~~LS~G 149 (248)
T PRK09580 74 DRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSV----NVGFSGG 149 (248)
T ss_pred HHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCC----CCCCCHH
Confidence 12 35699999999999888887776543211 00 0 00112233456778899999963 333322 1379999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhc-cCEEEEEcCCeEEEec
Q 006571 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHK-FDKLILLGKGSLLYFG 378 (640)
Q Consensus 300 qrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~-~D~i~vL~~G~iv~~G 378 (640)
|||||+|||||+.+|+||+|||||+|||+.++..+.+.|+++++.|+|||++||++. .+... +|+|++|++|++++.|
T Consensus 150 ~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~-~~~~~~~d~i~~l~~g~i~~~g 228 (248)
T PRK09580 150 EKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLYQGRIVKSG 228 (248)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHhhhCCEEEEEECCeEEEeC
Confidence 999999999999999999999999999999999999999999877899999999965 35555 8999999999999999
Q ss_pred ChHHHHHHHHhc
Q 006571 379 KASEAMAYFSSI 390 (640)
Q Consensus 379 ~~~~~~~~f~~~ 390 (640)
+++.+ +.++..
T Consensus 229 ~~~~~-~~~~~~ 239 (248)
T PRK09580 229 DFTLV-KQLEEQ 239 (248)
T ss_pred CHHHH-HHHHhc
Confidence 98855 444433
No 245
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=3.7e-41 Score=345.82 Aligned_cols=218 Identities=25% Similarity=0.421 Sum_probs=180.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEe-----C
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP-----Y 223 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~-----~ 223 (640)
.|+++||+++| +++.+|+|+||+|++|++++|+||||||||||+++|+|... +.+|+|.++|++ +
T Consensus 3 ~l~~~~l~~~~--------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~ 72 (253)
T TIGR02323 3 LLQVSGLSKSY--------GGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLA--PDHGTATYIMRSGAELEL 72 (253)
T ss_pred eEEEeeeEEEe--------CCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEEeccccccccc
Confidence 58999999998 24569999999999999999999999999999999999643 568999999976 4
Q ss_pred Ch----h----ccCcEEEEccCCC--CCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCc-cccccccCcc
Q 006571 224 SK----S----LKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSF 292 (640)
Q Consensus 224 ~~----~----~~~~i~yV~Q~~~--l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~ 292 (640)
.. . .++.++|++|++. +++.+|+.||+.+..... . ........+.+.++++.+++.+ ..++ .
T Consensus 73 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~-~-~~~~~~~~~~~~~~l~~l~l~~~~~~~-----~ 145 (253)
T TIGR02323 73 YQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAI-G-ARHYGNIRAAAHDWLEEVEIDPTRIDD-----L 145 (253)
T ss_pred ccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHh-c-ccchHHHHHHHHHHHHHcCCChhhhhc-----C
Confidence 21 1 2356999999974 456679999997643211 1 0112234467889999999963 4444 3
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcC
Q 006571 293 VRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGK 371 (640)
Q Consensus 293 ~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~ 371 (640)
+..|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||+++|++. .+...||++++|++
T Consensus 146 ~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~-~~~~~~d~~~~l~~ 224 (253)
T TIGR02323 146 PRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG-VARLLAQRLLVMQQ 224 (253)
T ss_pred chhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC
Confidence 5789999999999999999999999999999999999999999999998764 899999999965 46678999999999
Q ss_pred CeEEEecChHHHH
Q 006571 372 GSLLYFGKASEAM 384 (640)
Q Consensus 372 G~iv~~G~~~~~~ 384 (640)
|++++.|+++++.
T Consensus 225 G~i~~~~~~~~~~ 237 (253)
T TIGR02323 225 GRVVESGLTDQVL 237 (253)
T ss_pred CEEEEECCHHHHh
Confidence 9999999988764
No 246
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=1.6e-41 Score=342.85 Aligned_cols=210 Identities=24% Similarity=0.414 Sum_probs=175.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++||+++| +++++|+|+||+|++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++..
T Consensus 7 ~i~~~~l~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~~~~~~~ 76 (225)
T PRK10247 7 LLQLQNVGYLA--------GDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLI--SPTSGTLLFEGEDISTLKP 76 (225)
T ss_pred eEEEeccEEee--------CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhccc--CCCCCeEEECCEEcCcCCH
Confidence 69999999998 3457999999999999999999999999999999999954 3568999999988642
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCc-cccccccCccCCcCCHHHHHH
Q 006571 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKR 303 (640)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~LSGGqrqR 303 (640)
.+++.++|++|++.+++. ||+||+.+....+. .. ..++++.++++.++|.+ ..++ .+..||||||||
T Consensus 77 ~~~~~~i~~~~q~~~l~~~-tv~enl~~~~~~~~---~~--~~~~~~~~~l~~~~l~~~~~~~-----~~~~LS~G~~qr 145 (225)
T PRK10247 77 EIYRQQVSYCAQTPTLFGD-TVYDNLIFPWQIRN---QQ--PDPAIFLDDLERFALPDTILTK-----NIAELSGGEKQR 145 (225)
T ss_pred HHHHhccEEEecccccccc-cHHHHHHhHHhhcC---CC--hHHHHHHHHHHHcCCChHHhcC-----CcccCCHHHHHH
Confidence 346789999999999874 99999998643321 11 12345778999999953 4443 457899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEc-CCeEEEecChH
Q 006571 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLG-KGSLLYFGKAS 381 (640)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~-~G~iv~~G~~~ 381 (640)
++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||+++|++.. + ..||++++|+ ++..+..|+++
T Consensus 146 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~-~-~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 146 ISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDE-I-NHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHH-H-HhCCEEEEEecccchHhhhhhc
Confidence 99999999999999999999999999999999999998764 8999999999764 5 5699999995 56667777664
No 247
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=2.6e-41 Score=379.52 Aligned_cols=219 Identities=26% Similarity=0.401 Sum_probs=185.1
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CcccEEEECCEeCCh---
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYSK--- 225 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~-~~~G~I~~~G~~~~~--- 225 (640)
|+++||+++| +++++|+||||++++||+++|+||||||||||+++|+|... | +.+|+|.++|+++..
T Consensus 2 l~i~~l~~~~--------~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~-~~~~~G~i~~~g~~~~~~~~ 72 (500)
T TIGR02633 2 LEMKGIVKTF--------GGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYP-HGTWDGEIYWSGSPLKASNI 72 (500)
T ss_pred EEEEeEEEEe--------CCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCCCeEEEECCEECCCCCH
Confidence 7899999998 34579999999999999999999999999999999999653 3 258999999998742
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCC-CccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHH
Q 006571 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN-TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (640)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (640)
..++.++||+|++.+++.+||+||+.++....... ....++..++++++++.++|.+..+. ..+..|||||||
T Consensus 73 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----~~~~~LSgG~~q 148 (500)
T TIGR02633 73 RDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVT----RPVGDYGGGQQQ 148 (500)
T ss_pred HHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCccc----CchhhCCHHHHH
Confidence 13467999999999999999999999865322110 12233445678899999999765421 234689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHH
Q 006571 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (640)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (640)
||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.||+|++|++|++++.|++++
T Consensus 149 rv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (500)
T TIGR02633 149 LVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLN-EVKAVCDTICVIRDGQHVATKDMST 227 (500)
T ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHHhCCEEEEEeCCeEeeecCccc
Confidence 999999999999999999999999999999999999999888999999999975 4778899999999999999998754
No 248
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=2.1e-41 Score=351.92 Aligned_cols=213 Identities=22% Similarity=0.376 Sum_probs=177.9
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++||+++|+ .+.+.+|+|+||+|++||+++|+||||||||||+++|+|... .+|+|.+||.++..
T Consensus 2 ~i~~~nls~~~~------~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~---~~G~I~i~g~~i~~~~~ 72 (275)
T cd03289 2 QMTVKDLTAKYT------EGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGDIQIDGVSWNSVPL 72 (275)
T ss_pred eEEEEEEEEEeC------CCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEEhhhCCH
Confidence 489999999983 124569999999999999999999999999999999999653 47999999998742
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCcccc-------ccccCccCCcCC
Q 006571 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD-------TMIGGSFVRGVS 297 (640)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-------t~vg~~~~~~LS 297 (640)
.+++.|+||||++.+|+. ||+||+.... ..+. +++.+.++.+||.+..+ +.++. ....||
T Consensus 73 ~~lr~~i~~v~q~~~lf~~-tv~~nl~~~~------~~~~----~~~~~~l~~~gL~~~~~~~p~~l~~~~~~-~g~~LS 140 (275)
T cd03289 73 QKWRKAFGVIPQKVFIFSG-TFRKNLDPYG------KWSD----EEIWKVAEEVGLKSVIEQFPGQLDFVLVD-GGCVLS 140 (275)
T ss_pred HHHhhhEEEECCCcccchh-hHHHHhhhcc------CCCH----HHHHHHHHHcCCHHHHHhCcccccceecC-CCCCCC
Confidence 467889999999999985 9999996421 1122 34566777778765433 33332 345699
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEe
Q 006571 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (640)
Q Consensus 298 GGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (640)
||||||++|||||+.+|+||||||||++||+.+...+.+.|+++. .++|||+++|++. .+ ..||||++|++|++++.
T Consensus 141 ~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i-~~~dri~vl~~G~i~~~ 217 (275)
T cd03289 141 HGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIE-AM-LECQRFLVIEENKVRQY 217 (275)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHH-HH-HhCCEEEEecCCeEeec
Confidence 999999999999999999999999999999999999999999875 4899999999975 34 45999999999999999
Q ss_pred cChHHHHH
Q 006571 378 GKASEAMA 385 (640)
Q Consensus 378 G~~~~~~~ 385 (640)
|++++++.
T Consensus 218 g~~~~l~~ 225 (275)
T cd03289 218 DSIQKLLN 225 (275)
T ss_pred CCHHHHhh
Confidence 99999864
No 249
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-41 Score=344.49 Aligned_cols=214 Identities=33% Similarity=0.517 Sum_probs=172.3
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++|++++|. ..+.+|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 2 ~l~~~~l~~~~~-------~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~ 72 (229)
T cd03254 2 EIEFENVNFSYD-------EKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD--PQKGQILIDGIDIRDISR 72 (229)
T ss_pred eEEEEEEEEecC-------CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCEeHHHcCH
Confidence 488999999982 13469999999999999999999999999999999999653 568999999988742
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCcc-------ccccccCccCCcCC
Q 006571 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC-------QDTMIGGSFVRGVS 297 (640)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~t~vg~~~~~~LS 297 (640)
.+++.++|++|++.+++. ||+||+.+.... ... .++.+.++.+++.+. .++.+ +..+..||
T Consensus 73 ~~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~~-----~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~LS 141 (229)
T cd03254 73 KSLRSMIGVVLQDTFLFSG-TIMENIRLGRPN-----ATD----EEVIEAAKEAGAHDFIMKLPNGYDTVL-GENGGNLS 141 (229)
T ss_pred HHHhhhEEEecCCchhhhh-HHHHHHhccCCC-----CCH----HHHHHHHHHhChHHHHHhCcccccCHh-hcCCCcCC
Confidence 356779999999998875 999999875321 111 122233333333221 12222 23457899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEe
Q 006571 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (640)
Q Consensus 298 GGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (640)
|||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++ +|+|||++||++.. + ..||++++|++|++++.
T Consensus 142 ~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~-~-~~~d~i~~l~~g~~~~~ 218 (229)
T cd03254 142 QGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLST-I-KNADKILVLDDGKIIEE 218 (229)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHH-H-hhCCEEEEEeCCeEEEe
Confidence 999999999999999999999999999999999999999999986 48999999999754 4 56999999999999999
Q ss_pred cChHHHHH
Q 006571 378 GKASEAMA 385 (640)
Q Consensus 378 G~~~~~~~ 385 (640)
|+.+++..
T Consensus 219 ~~~~~~~~ 226 (229)
T cd03254 219 GTHDELLA 226 (229)
T ss_pred CCHHHHHh
Confidence 99877654
No 250
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=1.1e-41 Score=346.51 Aligned_cols=218 Identities=30% Similarity=0.503 Sum_probs=172.1
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (640)
++++|+++.|.. .+++++|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 1 l~i~~l~~~~~~-----~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~ 73 (238)
T cd03249 1 IEFKNVSFRYPS-----RPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYD--PTSGEILLDGVDIRDLNLR 73 (238)
T ss_pred CeEEEEEEecCC-----CCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCC--CCCCEEEECCEehhhcCHH
Confidence 468999998821 123579999999999999999999999999999999999653 568999999988642
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHH-----HHHHHHHHcCCCccccccccCccCCcCCHHH
Q 006571 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (640)
Q Consensus 226 ~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 300 (640)
..++.++|++|++.+++ .||+||+.+..... ..++..+ .+.++++.+ +...++.. +..+..|||||
T Consensus 74 ~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~-~~~~~~LS~G~ 144 (238)
T cd03249 74 WLRSQIGLVSQEPVLFD-GTIAENIRYGKPDA-----TDEEVEEAAKKANIHDFIMSL--PDGYDTLV-GERGSQLSGGQ 144 (238)
T ss_pred HHHhhEEEECCchhhhh-hhHHHHhhccCCCC-----CHHHHHHHHHHcChHHHHHhh--ccccceee-ccCCccCCHHH
Confidence 23567999999998886 69999998753211 1111111 122233332 11122222 23457899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecCh
Q 006571 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (640)
Q Consensus 301 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (640)
||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++. +|+|||++||++.. + ..||++++|++|++++.|+.
T Consensus 145 ~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~~-~-~~~d~v~~l~~G~i~~~~~~ 221 (238)
T cd03249 145 KQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLST-I-RNADLIAVLQNGQVVEQGTH 221 (238)
T ss_pred HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHH-H-hhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999999999987 78999999999764 5 47999999999999999998
Q ss_pred HHHHHH
Q 006571 381 SEAMAY 386 (640)
Q Consensus 381 ~~~~~~ 386 (640)
+++.++
T Consensus 222 ~~~~~~ 227 (238)
T cd03249 222 DELMAQ 227 (238)
T ss_pred HHHhhc
Confidence 887654
No 251
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.6e-41 Score=353.07 Aligned_cols=225 Identities=24% Similarity=0.431 Sum_probs=184.1
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC---CCcccEEEECCEeCC
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME---PTVGGSITYNDHPYS 224 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~---~~~~G~I~~~G~~~~ 224 (640)
..|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|.+.+ ++.+|+|.++|.++.
T Consensus 44 ~~l~i~nl~~~~--------~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~ 115 (305)
T PRK14264 44 AKLSVEDLDVYY--------GDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIY 115 (305)
T ss_pred ceEEEEEEEEEe--------CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 369999999998 345799999999999999999999999999999999996532 146899999999874
Q ss_pred h------hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCC--C-------Ccc-HHHHHHHHHHHHHHcCCCccccccc
Q 006571 225 K------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP--N-------TLT-KQQKEKRAIDVINELGLERCQDTMI 288 (640)
Q Consensus 225 ~------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~--~-------~~~-~~~~~~~v~~~l~~lgL~~~~~t~v 288 (640)
. .+++.++||+|++.+++ .||+||+.++...... . ... .....+.+.++++.++|.+......
T Consensus 116 ~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 194 (305)
T PRK14264 116 QDGVNLVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRL 194 (305)
T ss_pred cccccHHHHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHh
Confidence 2 34678999999999887 4999999987532100 0 011 1223456788899998854332222
Q ss_pred cCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEE-E
Q 006571 289 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKL-I 367 (640)
Q Consensus 289 g~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i-~ 367 (640)
+..+..|||||||||+|||||+.+|+||||||||+|||+.++..+.+.|+++++ ++|||++||++. .+.++||++ +
T Consensus 195 -~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~i~~~~d~i~~ 271 (305)
T PRK14264 195 -DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQ-QAARISDQTAV 271 (305)
T ss_pred -cCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhcCEEEE
Confidence 344678999999999999999999999999999999999999999999999976 589999999975 467889997 5
Q ss_pred EEcCCeEEEecChHHHH
Q 006571 368 LLGKGSLLYFGKASEAM 384 (640)
Q Consensus 368 vL~~G~iv~~G~~~~~~ 384 (640)
+|++|++++.|+++++.
T Consensus 272 ~l~~G~i~~~g~~~~~~ 288 (305)
T PRK14264 272 FLTGGELVEYDDTDKIF 288 (305)
T ss_pred EecCCEEEEeCCHHHHH
Confidence 78999999999988764
No 252
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-41 Score=378.55 Aligned_cols=216 Identities=25% Similarity=0.396 Sum_probs=184.3
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++||+++| +++++|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 4 ~l~~~~l~~~~--------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~i~~~~~ 73 (501)
T PRK11288 4 YLSFDGIGKTF--------PGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQ--PDAGSILIDGQEMRFAST 73 (501)
T ss_pred eEEEeeeEEEE--------CCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECCCCCH
Confidence 69999999998 34579999999999999999999999999999999999653 568999999998742
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHH
Q 006571 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (640)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (640)
.+++.|+||+|++.+++.+||.||+.++............+..+++.++++.+||.+..+. .+.+||||||||
T Consensus 74 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LSgGq~qr 148 (501)
T PRK11288 74 TAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDT-----PLKYLSIGQRQM 148 (501)
T ss_pred HHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCC-----chhhCCHHHHHH
Confidence 2467899999999999999999999986421111112334445678899999999765554 356899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecCh
Q 006571 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (640)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (640)
|+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+..+||+|++|++|+++..++.
T Consensus 149 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~-~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 149 VEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRME-EIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeecCc
Confidence 99999999999999999999999999999999999999878999999999975 46788999999999999877653
No 253
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.8e-41 Score=322.60 Aligned_cols=219 Identities=29% Similarity=0.481 Sum_probs=191.0
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhcc
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~ 228 (640)
.+..++++.+|.. ..+.+|+|||++|.+||.++++||||||||||||+++|... +..|+|.+||+++... -
T Consensus 3 ~l~~~~~sl~y~g------~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~--P~~G~i~l~~r~i~gP-g 73 (259)
T COG4525 3 MLNVSHLSLSYEG------KPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT--PSRGSIQLNGRRIEGP-G 73 (259)
T ss_pred eeehhheEEecCC------cchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcC--cccceEEECCEeccCC-C
Confidence 4677888888832 22569999999999999999999999999999999999653 5689999999998532 2
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHH
Q 006571 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN 308 (640)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~ 308 (640)
..-|.|||++.|+|.+||.||+.|+..++ .+.+.++.+++.+.+..+||.+..+. ++.+|||||||||.|||
T Consensus 74 aergvVFQ~~~LlPWl~~~dNvafgL~l~---Gi~k~~R~~~a~q~l~~VgL~~~~~~-----~i~qLSGGmrQRvGiAR 145 (259)
T COG4525 74 AERGVVFQNEALLPWLNVIDNVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHK-----YIWQLSGGMRQRVGIAR 145 (259)
T ss_pred ccceeEeccCccchhhHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHhCccccccc-----ceEeecchHHHHHHHHH
Confidence 33589999999999999999999999886 57889999999999999999887665 45799999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCcHHHhccCEEEEEcC--CeEEEecChHHHHH
Q 006571 309 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGK--GSLLYFGKASEAMA 385 (640)
Q Consensus 309 aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~tH~~~~~i~~~~D~i~vL~~--G~iv~~G~~~~~~~ 385 (640)
||..+|++|+||||+++||.-+++++.++|-++++ .|+.++++||+..+ ..-++++++||+. |||+..=+++=..+
T Consensus 146 ALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieE-AlflatrLvvlsp~pgRvv~~~~~df~rR 224 (259)
T COG4525 146 ALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEE-ALFLATRLVVLSPGPGRVVERLPLDFARR 224 (259)
T ss_pred HhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHH-HHhhhheeEEecCCCceeeEecCCCHHHH
Confidence 99999999999999999999999999999999876 49999999999765 5568999999985 79998877763333
No 254
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=8.2e-43 Score=432.60 Aligned_cols=215 Identities=23% Similarity=0.389 Sum_probs=182.1
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC---
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--- 224 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~--- 224 (640)
..|+|+||+|+|+ .+.+++|+||||+|+|||.+||+|+||||||||+++|.| ++++ .+|+|.+||.|+.
T Consensus 1307 G~I~f~nVsf~Y~------~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlr-l~~p-~~G~I~IDG~di~~i~ 1378 (1560)
T PTZ00243 1307 GSLVFEGVQMRYR------EGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMR-MVEV-CGGEIRVNGREIGAYG 1378 (1560)
T ss_pred CeEEEEEEEEEeC------CCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhC-CCCC-CCcEEEECCEEcccCC
Confidence 3699999999993 123569999999999999999999999999999999997 4544 5899999999986
Q ss_pred -hhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcC-------CCccccccccCccCCcC
Q 006571 225 -KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-------LERCQDTMIGGSFVRGV 296 (640)
Q Consensus 225 -~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~t~vg~~~~~~L 296 (640)
+.+|++|+|||||+.+|+. ||+|||.... ..+++ ++.++++..+ |+++.||.+|.. ...|
T Consensus 1379 l~~LR~~I~iVpQdp~LF~g-TIreNIdp~~------~~sde----eI~~Al~~a~l~~~I~~lp~Gldt~vge~-G~nL 1446 (1560)
T PTZ00243 1379 LRELRRQFSMIPQDPVLFDG-TVRQNVDPFL------EASSA----EVWAALELVGLRERVASESEGIDSRVLEG-GSNY 1446 (1560)
T ss_pred HHHHHhcceEECCCCccccc-cHHHHhCccc------CCCHH----HHHHHHHHCCChHHHhhCcccccccccCC-cCcC
Confidence 3689999999999999976 9999996421 22332 3444444443 456789999864 4579
Q ss_pred CHHHHHHHHHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEE
Q 006571 297 SGGERKRVCIGNEIIIN-PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (640)
Q Consensus 297 SGGqrqRv~IA~aL~~~-P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv 375 (640)
|||||||++|||||+++ |+|||||||||+||+.+...|.+.|++.. +++|||+|+|+++. ...||+|++|++|+|+
T Consensus 1447 SgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~t--i~~~DrIlVLd~G~Vv 1523 (1560)
T PTZ00243 1447 SVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLHT--VAQYDKIIVMDHGAVA 1523 (1560)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHHH--HHhCCEEEEEECCEEE
Confidence 99999999999999996 89999999999999999999999999864 47999999999864 5779999999999999
Q ss_pred EecChHHHHH
Q 006571 376 YFGKASEAMA 385 (640)
Q Consensus 376 ~~G~~~~~~~ 385 (640)
+.|+|+++++
T Consensus 1524 E~Gt~~eLl~ 1533 (1560)
T PTZ00243 1524 EMGSPRELVM 1533 (1560)
T ss_pred EECCHHHHHh
Confidence 9999999874
No 255
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-41 Score=349.25 Aligned_cols=220 Identities=23% Similarity=0.389 Sum_probs=180.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhcc
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~ 228 (640)
.|+++||+++|. +++++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++....+
T Consensus 6 ~l~~~~l~~~~~-------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~ 76 (272)
T PRK15056 6 GIVVNDVTVTWR-------NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR--LASGKISILGQPTRQALQ 76 (272)
T ss_pred eEEEEeEEEEec-------CCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEhHHhhc
Confidence 589999999982 23579999999999999999999999999999999999653 468999999998754333
Q ss_pred -CcEEEEccCCCCC--CCCCHHHHHHHHHhccCC-CCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHH
Q 006571 229 -SKIGFVTQDDVLF--PHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (640)
Q Consensus 229 -~~i~yV~Q~~~l~--~~lTV~Enl~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (640)
+.++|++|++.+. ...++++|+.++...... ........++++.++++.+||.+..++. +..||||||||+
T Consensus 77 ~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgG~~qrv 151 (272)
T PRK15056 77 KNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQ-----IGELSGGQKKRV 151 (272)
T ss_pred cceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCC-----cccCCHHHHHHH
Confidence 4699999997652 234789998764211000 0011223345677889999998766654 468999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHH
Q 006571 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (640)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (640)
+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++. .+.+.||+++++ +|++++.|+++++.
T Consensus 152 ~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~-~~~~~~d~v~~~-~G~i~~~g~~~~~~ 229 (272)
T PRK15056 152 FLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG-SVTEFCDYTVMV-KGTVLASGPTETTF 229 (272)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE-CCEEEeecCHHhcc
Confidence 9999999999999999999999999999999999999877999999999975 467899999887 89999999988763
No 256
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5e-41 Score=386.02 Aligned_cols=227 Identities=24% Similarity=0.380 Sum_probs=189.3
Q ss_pred eeEEEEeEEEEEeeccc--c-ccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC
Q 006571 148 IYLKFTDVTYKVILKGM--T-SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS 224 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~--~-~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~ 224 (640)
..|+++||++.|..... . ....+.+|+||||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++.
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~--p~~G~I~~~g~~i~ 389 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVE--SQGGEIIFNGQRID 389 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCcEEEECCEECC
Confidence 36999999999842100 0 0012469999999999999999999999999999999999653 46899999999874
Q ss_pred h-------hccCcEEEEccCC--CCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCccCC
Q 006571 225 K-------SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVR 294 (640)
Q Consensus 225 ~-------~~~~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~ 294 (640)
. .++++|+||+|++ .+++.+||.||+.+...... .....+..+++.++++.+||. +..++ +++
T Consensus 390 ~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~~-----~~~ 462 (623)
T PRK10261 390 TLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHG--LLPGKAAAARVAWLLERVGLLPEHAWR-----YPH 462 (623)
T ss_pred cCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCHHHhhC-----Ccc
Confidence 2 2456899999997 58899999999998654321 112344556788999999995 44454 457
Q ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCe
Q 006571 295 GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (640)
Q Consensus 295 ~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~ 373 (640)
+|||||||||+|||||+.+|+||||||||+|||+.++..++++|++++++ |.|||++|||+. .+.++||+|++|++|+
T Consensus 463 ~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~-~v~~~~dri~vl~~G~ 541 (623)
T PRK10261 463 EFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA-VVERISHRVAVMYLGQ 541 (623)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999999999865 899999999975 4778999999999999
Q ss_pred EEEecChHHHH
Q 006571 374 LLYFGKASEAM 384 (640)
Q Consensus 374 iv~~G~~~~~~ 384 (640)
+++.|+++++.
T Consensus 542 iv~~g~~~~i~ 552 (623)
T PRK10261 542 IVEIGPRRAVF 552 (623)
T ss_pred EEEecCHHHHh
Confidence 99999999875
No 257
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=4.3e-41 Score=340.80 Aligned_cols=206 Identities=24% Similarity=0.384 Sum_probs=171.7
Q ss_pred ceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---CcccEEEECCEeCCh-hc-cCcEEEEccCCC--CCCCC
Q 006571 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYSK-SL-KSKIGFVTQDDV--LFPHL 244 (640)
Q Consensus 172 iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~---~~~G~I~~~G~~~~~-~~-~~~i~yV~Q~~~--l~~~l 244 (640)
+|+|+||+|++|++++|+||||||||||+|+|+|... | +.+|+|.++|+++.. .. ++.++|++|++. +++.+
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 79 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLP-PGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLF 79 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CccCccccEEEECCEechhhhhhhheeEEEecCchhhcCccc
Confidence 5899999999999999999999999999999999653 3 168999999998753 22 357999999984 56678
Q ss_pred CHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 006571 245 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 324 (640)
Q Consensus 245 TV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTs 324 (640)
|+.||+.+...... .......+++.++++.++|.+.. ...+..+..|||||||||+|||+|+.+|+||||||||+
T Consensus 80 t~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~ 154 (230)
T TIGR02770 80 TMGNHAIETLRSLG---KLSKQARALILEALEAVGLPDPE--EVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTT 154 (230)
T ss_pred CHHHHHHHHHHHcC---ccHHHHHHHHHHHHHHcCCCchH--HHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 99999987653221 12233456788999999997320 01123457899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHH
Q 006571 325 GLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (640)
Q Consensus 325 gLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (640)
|||+.++..+.+.|++++++ |+|||+++|++. ++..+||++++|++|+++..|+++++.
T Consensus 155 ~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 155 DLDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAVMDDGRIVERGTVKEIF 214 (230)
T ss_pred ccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999864 899999999976 577889999999999999999998874
No 258
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=2.2e-41 Score=340.12 Aligned_cols=209 Identities=30% Similarity=0.545 Sum_probs=171.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++|++++|. ...+.+|+|+||+|++|++++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 2 ~l~~~~l~~~~~------~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~ 73 (220)
T cd03245 2 RIEFRNVSFSYP------NQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK--PTSGSVLLDGTDIRQLDP 73 (220)
T ss_pred eEEEEEEEEEcC------CCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCeEEECCEEhHHCCH
Confidence 378999999982 123569999999999999999999999999999999999653 568999999998642
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCcccccccc------CccCCcCCH
Q 006571 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIG------GSFVRGVSG 298 (640)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg------~~~~~~LSG 298 (640)
..++.++|++|++.+++ .||.||+.+.... .. .+++.++++.+++.+..+.... ...+..|||
T Consensus 74 ~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~-----~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSg 143 (220)
T cd03245 74 ADLRRNIGYVPQDVTLFY-GTLRDNITLGAPL-----AD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSG 143 (220)
T ss_pred HHHHhhEEEeCCCCcccc-chHHHHhhcCCCC-----CC----HHHHHHHHHHcCcHHHHHhccccccceecCCCccCCH
Confidence 34568999999999887 6999999874211 11 2345567777777665443221 123468999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEec
Q 006571 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (640)
Q Consensus 299 GqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (640)
|||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ +|||++||++. .+ +.||++++|++|++++.|
T Consensus 144 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~-~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 144 GQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPS-LL-DLVDRIIVMDSGRIVADG 220 (220)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHH-HH-HhCCEEEEEeCCeEeecC
Confidence 9999999999999999999999999999999999999999998764 89999999976 34 799999999999998764
No 259
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-41 Score=377.37 Aligned_cols=216 Identities=20% Similarity=0.312 Sum_probs=183.2
Q ss_pred EEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh-----h
Q 006571 152 FTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----S 226 (640)
Q Consensus 152 ~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-----~ 226 (640)
++||+++| +++++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++.. .
T Consensus 1 ~~nl~~~~--------~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~ 70 (491)
T PRK10982 1 MSNISKSF--------PGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQ--KDSGSILFQGKEIDFKSSKEA 70 (491)
T ss_pred CCceEEEe--------CCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCceEEEECCEECCCCCHHHH
Confidence 36888888 34579999999999999999999999999999999999653 468999999998742 2
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHH
Q 006571 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (640)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (640)
.++.++||+|++.+++.+||+||+.++............+..++++++++.+++.+..++. +.+|||||||||+|
T Consensus 71 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~qrv~l 145 (491)
T PRK10982 71 LENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAK-----VATLSVSQMQMIEI 145 (491)
T ss_pred HhCCEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCc-----hhhCCHHHHHHHHH
Confidence 3567999999999999999999998764211010112334456788999999998766654 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHH
Q 006571 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (640)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (640)
||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||+|++|++|++++.|+++++
T Consensus 146 A~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 146 AKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKME-EIFQLCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEeecChhhC
Confidence 99999999999999999999999999999999999888999999999975 56788999999999999999997664
No 260
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.4e-41 Score=344.11 Aligned_cols=221 Identities=25% Similarity=0.439 Sum_probs=181.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEEC------CEe
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN------DHP 222 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~------G~~ 222 (640)
.|+++|++++| +++.+|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++ |++
T Consensus 10 ~i~~~~~~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~--~~~G~v~~~G~~~~~g~~ 79 (257)
T PRK14246 10 VFNISRLYLYI--------NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIE--IYDSKIKVDGKVLYFGKD 79 (257)
T ss_pred heeeeeEEEec--------CCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCcCceeEcCEEEECCcc
Confidence 69999999998 45679999999999999999999999999999999999643 345555554 455
Q ss_pred CC----hhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCH
Q 006571 223 YS----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (640)
Q Consensus 223 ~~----~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (640)
+. ...++.++|++|++.+++.+||+||+.++..... ...+++..+++.++++.+++.+...... +..+..|||
T Consensus 80 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~LS~ 156 (257)
T PRK14246 80 IFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHG--IKEKREIKKIVEECLRKVGLWKEVYDRL-NSPASQLSG 156 (257)
T ss_pred cccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCCccchhhh-cCCcccCCH
Confidence 42 1346789999999999998999999998754221 1123445567888999999863211111 224578999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEec
Q 006571 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (640)
Q Consensus 299 GqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (640)
|||||++|||||+.+|+++||||||+|||+.++..+.+.|+++++ +.|||++||++. .+.+.||++++|++|++++.|
T Consensus 157 G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~-~~~~~~d~v~~l~~g~i~~~g 234 (257)
T PRK14246 157 GQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQ-QVARVADYVAFLYNGELVEWG 234 (257)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHH-HHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999999865 689999999975 466889999999999999999
Q ss_pred ChHHHH
Q 006571 379 KASEAM 384 (640)
Q Consensus 379 ~~~~~~ 384 (640)
+++++.
T Consensus 235 ~~~~~~ 240 (257)
T PRK14246 235 SSNEIF 240 (257)
T ss_pred CHHHHH
Confidence 998875
No 261
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=6.1e-41 Score=378.20 Aligned_cols=221 Identities=29% Similarity=0.445 Sum_probs=185.6
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEEC----------
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN---------- 219 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~---------- 219 (640)
|+++|++++| +++++|+|+||+|++||+++|+||||||||||+|+|+|.+..++.+|+|.++
T Consensus 1 l~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~ 72 (520)
T TIGR03269 1 IEVKNLTKKF--------DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYV 72 (520)
T ss_pred CEEEEEEEEE--------CCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccc
Confidence 4789999998 3457999999999999999999999999999999999964212458999997
Q ss_pred -------------CEeC----------C----hhccCcEEEEccC-CCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHH
Q 006571 220 -------------DHPY----------S----KSLKSKIGFVTQD-DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRA 271 (640)
Q Consensus 220 -------------G~~~----------~----~~~~~~i~yV~Q~-~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v 271 (640)
|.++ . ...++.++||+|+ +.+++.+||+||+.++.... ..+..+.++++
T Consensus 73 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~ 149 (520)
T TIGR03269 73 ERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEI---GYEGKEAVGRA 149 (520)
T ss_pred ccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHc---CCCHHHHHHHH
Confidence 3221 0 1235679999997 67888899999999875432 12344556778
Q ss_pred HHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEE
Q 006571 272 IDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVT 350 (640)
Q Consensus 272 ~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~ 350 (640)
.++++.+||++..+. .+.+|||||||||+|||||+.+|++|||||||++||+.++..+++.|+++++ .|+|||+
T Consensus 150 ~~~l~~~gl~~~~~~-----~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvii 224 (520)
T TIGR03269 150 VDLIEMVQLSHRITH-----IARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVL 224 (520)
T ss_pred HHHHHHcCChhhhhc-----CcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEE
Confidence 999999999876654 3578999999999999999999999999999999999999999999999975 4899999
Q ss_pred EeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHHHH
Q 006571 351 TIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYF 387 (640)
Q Consensus 351 ~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~~f 387 (640)
+||++. .+.+.||+|++|++|++++.|+++++...+
T Consensus 225 vtHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 260 (520)
T TIGR03269 225 TSHWPE-VIEDLSDKAIWLENGEIKEEGTPDEVVAVF 260 (520)
T ss_pred EeCCHH-HHHHhcCEEEEEeCCEEeeecCHHHHHHHH
Confidence 999975 466889999999999999999998887654
No 262
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-40 Score=343.41 Aligned_cols=222 Identities=24% Similarity=0.401 Sum_probs=182.2
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-C--CcccEEEECCEeCC
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYS 224 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~-~--~~~G~I~~~G~~~~ 224 (640)
..|+++|++++| +++++|+|+||+|++||+++|+||||||||||+++|+|.... + +.+|+|.++|.++.
T Consensus 15 ~~l~~~~l~~~~--------~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~ 86 (265)
T PRK14252 15 QKSEVNKLNFYY--------GGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVN 86 (265)
T ss_pred ceEEEEEEEEEE--------CCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccc
Confidence 369999999998 245799999999999999999999999999999999996542 1 16899999997652
Q ss_pred --------hhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCcc-HHHHHHHHHHHHHHcCCCccccccccCccCCc
Q 006571 225 --------KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLT-KQQKEKRAIDVINELGLERCQDTMIGGSFVRG 295 (640)
Q Consensus 225 --------~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~-~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~ 295 (640)
..+++.++|++|++.+++. ||+||+.++.... ... ....++++.++++.+++.+...... +..+..
T Consensus 87 ~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~---~~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~ 161 (265)
T PRK14252 87 ILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIR---GVKRRSILEERVENALRNAALWDEVKDRL-GDLAFN 161 (265)
T ss_pred ccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHc---CCChHHHHHHHHHHHHHHcCCchhhhHHH-hCCccc
Confidence 1346789999999999986 9999999865322 112 2223456777888887743211111 234568
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEE
Q 006571 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (640)
Q Consensus 296 LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv 375 (640)
||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. ++.++||++++|++|+++
T Consensus 162 LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~-~~~~~~d~i~~l~~G~i~ 239 (265)
T PRK14252 162 LSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQ-QAARVSDYTAYMYMGELI 239 (265)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHH-HHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999976 689999999975 467889999999999999
Q ss_pred EecChHHHH
Q 006571 376 YFGKASEAM 384 (640)
Q Consensus 376 ~~G~~~~~~ 384 (640)
+.|+++++.
T Consensus 240 ~~g~~~~~~ 248 (265)
T PRK14252 240 EFGATDTIF 248 (265)
T ss_pred EeCCHHHHH
Confidence 999988764
No 263
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=6.1e-41 Score=332.82 Aligned_cols=190 Identities=31% Similarity=0.438 Sum_probs=162.4
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (640)
|+++|++++| +++.+|+|+||++++||+++|+||||||||||+++|+|....++.+|+|.+||+++..
T Consensus 1 l~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~ 72 (200)
T cd03217 1 LEIKDLHVSV--------GGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPE 72 (200)
T ss_pred CeEEEEEEEe--------CCEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHH
Confidence 4789999998 2457999999999999999999999999999999999964223568999999998753
Q ss_pred h-ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHH
Q 006571 226 S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (640)
Q Consensus 226 ~-~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (640)
. .++.++|++|++.+++.+|+++++. . ....||||||||+
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~~~~~~l~----------------------------------~-----~~~~LS~G~~qrv 113 (200)
T cd03217 73 ERARLGIFLAFQYPPEIPGVKNADFLR----------------------------------Y-----VNEGFSGGEKKRN 113 (200)
T ss_pred HHhhCcEEEeecChhhccCccHHHHHh----------------------------------h-----ccccCCHHHHHHH
Confidence 1 2446999999999998888887760 0 1146999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHh-ccCEEEEEcCCeEEEecChHHH
Q 006571 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFH-KFDKLILLGKGSLLYFGKASEA 383 (640)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~-~~D~i~vL~~G~iv~~G~~~~~ 383 (640)
+|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+.+ .||++++|++|++++.|+ .++
T Consensus 114 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~-~~~~~~~d~i~~l~~G~i~~~~~-~~~ 191 (200)
T cd03217 114 EILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQR-LLDYIKPDRVHVLYDGRIVKSGD-KEL 191 (200)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhhCCEEEEEECCEEEEEcc-HHH
Confidence 9999999999999999999999999999999999999877899999999976 4555 799999999999999994 446
Q ss_pred HHHHH
Q 006571 384 MAYFS 388 (640)
Q Consensus 384 ~~~f~ 388 (640)
..+|.
T Consensus 192 ~~~~~ 196 (200)
T cd03217 192 ALEIE 196 (200)
T ss_pred Hhhhc
Confidence 55554
No 264
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.3e-41 Score=318.86 Aligned_cols=212 Identities=32% Similarity=0.507 Sum_probs=183.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++++++.+.. ..+...||++|++.|++||.+||||||||||||||-+|+|.. . +++|+|.+.|+++.+
T Consensus 6 ii~~~~l~ktvg~----~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd-~-~ssGeV~l~G~~L~~ldE 79 (228)
T COG4181 6 IIEVHHLSKTVGQ----GEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLD-D-PSSGEVRLLGQPLHKLDE 79 (228)
T ss_pred eeehhhhhhhhcC----CCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCC-C-CCCceEEEcCcchhhcCH
Confidence 5888888887632 234568999999999999999999999999999999999943 3 569999999999742
Q ss_pred ----hcc-CcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHH
Q 006571 226 ----SLK-SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (640)
Q Consensus 226 ----~~~-~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 300 (640)
.+| +++|+|||...|.|+||..||+...+.++.. +..+....+.++++.+||.+..+. ++.+|||||
T Consensus 80 d~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge---~~~~~~~~A~~lL~~vGLg~Rl~H-----yP~qLSGGE 151 (228)
T COG4181 80 DARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGE---SSADSRAGAKALLEAVGLGKRLTH-----YPAQLSGGE 151 (228)
T ss_pred HHHHHhhccceeEEEEeeeccccchhhhhccchhhhcCC---ccccHHHHHHHHHHHhCccccccc-----CccccCchH
Confidence 233 6899999999999999999999999887642 233445668889999999876653 568999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEE
Q 006571 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (640)
Q Consensus 301 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (640)
+|||+||||+...|+|||.||||-+||..+..+|.++|-.+.+ .|.|.|++||||. +..-|||++-|.+|+++.
T Consensus 152 QQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~--LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 152 QQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ--LAARCDRQLRLRSGRLVE 226 (228)
T ss_pred HHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH--HHHhhhheeeeecceecc
Confidence 9999999999999999999999999999999999999999875 5999999999975 567899999999999975
No 265
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=9.6e-41 Score=332.22 Aligned_cols=199 Identities=24% Similarity=0.422 Sum_probs=170.1
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC---h
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---K 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~---~ 225 (640)
+|+++|++++| +.+++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++. .
T Consensus 1 ~l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~v~~~g~~~~~~~~ 70 (204)
T PRK13538 1 MLEARNLACER--------DERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR--PDAGEVLWQGEPIRRQRD 70 (204)
T ss_pred CeEEEEEEEEE--------CCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEcccchH
Confidence 37899999998 24579999999999999999999999999999999999653 56899999999874 2
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHH
Q 006571 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (640)
Q Consensus 226 ~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (640)
..+++++|++|++.+++.+||.||+.+....+. . ...++++++++.+||.+..++. +..||||||||++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~---~---~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrl~ 139 (204)
T PRK13538 71 EYHQDLLYLGHQPGIKTELTALENLRFYQRLHG---P---GDDEALWEALAQVGLAGFEDVP-----VRQLSAGQQRRVA 139 (204)
T ss_pred HhhhheEEeCCccccCcCCcHHHHHHHHHHhcC---c---cHHHHHHHHHHHcCCHHHhhCC-----hhhcCHHHHHHHH
Confidence 356789999999999999999999998754321 1 2345678899999998666553 4689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEE
Q 006571 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 369 (640)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL 369 (640)
|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++.. +.+..+|++++
T Consensus 140 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~-i~~~~~~~~~~ 202 (204)
T PRK13538 140 LARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLP-VASDKVRKLRL 202 (204)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhh-hccCCceEEec
Confidence 9999999999999999999999999999999999998778999999999764 55555777776
No 266
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.3e-41 Score=341.57 Aligned_cols=215 Identities=33% Similarity=0.515 Sum_probs=171.2
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (640)
|+++|++++|. +.+.+|+|+||+|++|++++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 1 l~~~~l~~~~~-------~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~v~~~g~~~~~~~~~ 71 (236)
T cd03253 1 IEFENVTFAYD-------PGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYD--VSSGSILIDGQDIREVTLD 71 (236)
T ss_pred CEEEEEEEEeC-------CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCEEEECCEEhhhCCHH
Confidence 47899999882 13569999999999999999999999999999999999653 568999999998742
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHH-----HHHHHHHHcCCCccccccccCccCCcCCHHH
Q 006571 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (640)
Q Consensus 226 ~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 300 (640)
.+++.++|++|++.+++ .||+||+.++... ........ .+.+.++.+ +...++.+ +..+..|||||
T Consensus 72 ~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~-----~~~~~~~~~~~~~~l~~~~~~l--~~~~~~~~-~~~~~~LS~G~ 142 (236)
T cd03253 72 SLRRAIGVVPQDTVLFN-DTIGYNIRYGRPD-----ATDEEVIEAAKAAQIHDKIMRF--PDGYDTIV-GERGLKLSGGE 142 (236)
T ss_pred HHHhhEEEECCCChhhc-chHHHHHhhcCCC-----CCHHHHHHHHHHcCcHHHHHhc--cccccchh-hcCCCcCCHHH
Confidence 34667999999999886 6999999875321 11111111 122233322 22223322 23357899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecCh
Q 006571 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (640)
Q Consensus 301 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (640)
|||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ |+|||+++|++.. + ..||++++|++|++++.|+.
T Consensus 143 ~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~-~-~~~d~~~~l~~g~i~~~~~~ 219 (236)
T cd03253 143 KQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLST-I-VNADKIIVLKDGRIVERGTH 219 (236)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHH-H-HhCCEEEEEECCEEEeeCCH
Confidence 9999999999999999999999999999999999999999877 9999999999764 4 45999999999999999998
Q ss_pred HHHHH
Q 006571 381 SEAMA 385 (640)
Q Consensus 381 ~~~~~ 385 (640)
+++.+
T Consensus 220 ~~~~~ 224 (236)
T cd03253 220 EELLA 224 (236)
T ss_pred HHHhh
Confidence 77643
No 267
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=8.9e-41 Score=342.47 Aligned_cols=200 Identities=29% Similarity=0.468 Sum_probs=172.9
Q ss_pred ceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hccCcEEEEccCCCCCCCCCHH
Q 006571 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLTVK 247 (640)
Q Consensus 172 iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~i~yV~Q~~~l~~~lTV~ 247 (640)
+|+|+||+|++||+++|+||||||||||+++|+|.. ++ +|+|.++|+++.. ..++.++|++|++.+++.+|++
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~--~~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 87 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLL--PG-SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVF 87 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCC--CC-CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHH
Confidence 799999999999999999999999999999999964 34 8999999998742 3456799999998888889999
Q ss_pred HHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhh-------CCCEEEEe
Q 006571 248 ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIII-------NPSLLFLD 320 (640)
Q Consensus 248 Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~-------~P~iLlLD 320 (640)
||+.+.... .....+..++++++++.+||.+..++. +..||||||||++|||||+. +|++||||
T Consensus 88 ~nl~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllD 158 (248)
T PRK03695 88 QYLTLHQPD----KTRTEAVASALNEVAEALGLDDKLGRS-----VNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLD 158 (248)
T ss_pred HHHHhcCcc----CCCcHHHHHHHHHHHHHcCCHhHhcCC-----cccCCHHHHHHHHHHHHHhccccccCCCCCEEEEc
Confidence 999986321 122333456788999999997666553 46899999999999999998 67999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHH
Q 006571 321 EPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (640)
Q Consensus 321 EPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (640)
|||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|++++.|+++++.
T Consensus 159 EPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 221 (248)
T PRK03695 159 EPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLN-HTLRHADRVWLLKQGKLLASGRRDEVL 221 (248)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999877999999999965 477899999999999999999988763
No 268
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=6.7e-41 Score=378.64 Aligned_cols=227 Identities=27% Similarity=0.463 Sum_probs=187.5
Q ss_pred eeEEEEeEEEEEeeccc---cccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC
Q 006571 148 IYLKFTDVTYKVILKGM---TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS 224 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~---~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~ 224 (640)
..|+++||+++|..... ...+++.+|+||||+|++||+++|+||||||||||+|+|+|.+ + .+|+|+++|+++.
T Consensus 274 ~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~--~-~~G~i~~~g~~i~ 350 (529)
T PRK15134 274 PLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI--N-SQGEIWFDGQPLH 350 (529)
T ss_pred CcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC--C-CCcEEEECCEEcc
Confidence 36999999999831100 0001357999999999999999999999999999999999964 3 5899999998864
Q ss_pred h-------hccCcEEEEccCC--CCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCccCC
Q 006571 225 K-------SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVR 294 (640)
Q Consensus 225 ~-------~~~~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~ 294 (640)
. .+++.++||+|++ .+++.+||.||+.++...+.. .....+.++++.++++.+||. +..+. .+.
T Consensus 351 ~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~ 424 (529)
T PRK15134 351 NLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQP-TLSAAQREQQVIAVMEEVGLDPETRHR-----YPA 424 (529)
T ss_pred ccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHcCCCHHHHhc-----CCc
Confidence 2 1356799999997 488889999999987532211 123344556788999999996 34554 457
Q ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCe
Q 006571 295 GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (640)
Q Consensus 295 ~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~ 373 (640)
.|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||++. .+.++||+|++|++|+
T Consensus 425 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~-~~~~~~d~i~~l~~G~ 503 (529)
T PRK15134 425 EFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLH-VVRALCHQVIVLRQGE 503 (529)
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhcCeEEEEECCE
Confidence 89999999999999999999999999999999999999999999999865 899999999975 4778899999999999
Q ss_pred EEEecChHHHH
Q 006571 374 LLYFGKASEAM 384 (640)
Q Consensus 374 iv~~G~~~~~~ 384 (640)
+++.|+++++.
T Consensus 504 i~~~~~~~~~~ 514 (529)
T PRK15134 504 VVEQGDCERVF 514 (529)
T ss_pred EEEEcCHHHHh
Confidence 99999998874
No 269
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.1e-41 Score=384.27 Aligned_cols=225 Identities=22% Similarity=0.361 Sum_probs=187.1
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeC-----
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY----- 223 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~----- 223 (640)
.|+++||++.|... .+.+++|+||||+|++||++||+||||||||||+++|+|.+. +.+|+|.++|..+
T Consensus 12 ~l~v~~l~~~y~~~----~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~--p~~G~i~~~g~~~~~~~~ 85 (623)
T PRK10261 12 VLAVENLNIAFMQE----QQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLE--QAGGLVQCDKMLLRRRSR 85 (623)
T ss_pred eEEEeceEEEecCC----CCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCCeEEEECCEEeccccc
Confidence 69999999998311 123579999999999999999999999999999999999653 4589999998643
Q ss_pred --------Ch----hcc-CcEEEEccCC--CCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccc
Q 006571 224 --------SK----SLK-SKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMI 288 (640)
Q Consensus 224 --------~~----~~~-~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~v 288 (640)
.. .++ +.||||+|++ .+++.+||.||+.++..... ..+..+.++++.++++.+||++..+ .
T Consensus 86 ~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~--~ 161 (623)
T PRK10261 86 QVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQ--GASREEAMVEAKRMLDQVRIPEAQT--I 161 (623)
T ss_pred cccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChhh--H
Confidence 11 122 4799999998 68888999999999865321 2345556678899999999964210 1
Q ss_pred cCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEE
Q 006571 289 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLI 367 (640)
Q Consensus 289 g~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~ 367 (640)
-+.++.+|||||||||+|||||+.+|+||||||||++||+.++.+++++|++++++ |+|||++||++. .+.++||||+
T Consensus 162 ~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~-~~~~~adri~ 240 (623)
T PRK10261 162 LSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMG-VVAEIADRVL 240 (623)
T ss_pred HhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEE
Confidence 12356789999999999999999999999999999999999999999999999865 899999999975 4678999999
Q ss_pred EEcCCeEEEecChHHHH
Q 006571 368 LLGKGSLLYFGKASEAM 384 (640)
Q Consensus 368 vL~~G~iv~~G~~~~~~ 384 (640)
+|++|++++.|+++++.
T Consensus 241 vl~~G~i~~~g~~~~~~ 257 (623)
T PRK10261 241 VMYQGEAVETGSVEQIF 257 (623)
T ss_pred EeeCCeecccCCHHHhh
Confidence 99999999999988774
No 270
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-40 Score=323.44 Aligned_cols=170 Identities=31% Similarity=0.607 Sum_probs=153.5
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---h
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---S 226 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---~ 226 (640)
++++||+++| +.+++|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. .
T Consensus 1 l~~~~l~~~~--------~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~ 70 (173)
T cd03230 1 IEVRNLSKRY--------GKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK--PDSGEIKVLGKDIKKEPEE 70 (173)
T ss_pred CEEEEEEEEE--------CCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcccchHh
Confidence 4689999988 23469999999999999999999999999999999999643 468999999998742 4
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHH
Q 006571 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (640)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (640)
.++.++|++|++.+++.+|+.||+. ||||||||++|
T Consensus 71 ~~~~i~~~~q~~~~~~~~tv~~~~~--------------------------------------------LS~G~~qrv~l 106 (173)
T cd03230 71 VKRRIGYLPEEPSLYENLTVRENLK--------------------------------------------LSGGMKQRLAL 106 (173)
T ss_pred hhccEEEEecCCccccCCcHHHHhh--------------------------------------------cCHHHHHHHHH
Confidence 5678999999999999899999973 99999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeE
Q 006571 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (640)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~i 374 (640)
||||+.+|++|+|||||+|||+.++..+.+.|++++++|.|+|++||++. .+.+.||++++|++|++
T Consensus 107 aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~-~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 107 AQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILE-EAERLCDRVAILNNGRI 173 (173)
T ss_pred HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEeCCCC
Confidence 99999999999999999999999999999999999877899999999965 56678999999999974
No 271
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=1.4e-40 Score=330.37 Aligned_cols=195 Identities=26% Similarity=0.427 Sum_probs=169.1
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC---hh
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---KS 226 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~---~~ 226 (640)
|+++||++.| +++.+|+|+||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++. ..
T Consensus 1 l~i~~l~~~~--------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~ 70 (201)
T cd03231 1 LEADELTCER--------DGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSP--PLAGRVLLNGGPLDFQRDS 70 (201)
T ss_pred CEEEEEEEEe--------CCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecccccHH
Confidence 4789999998 34579999999999999999999999999999999999653 56899999998864 24
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHH
Q 006571 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (640)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (640)
+++.++|++|++.+++.+||+||+.+.... . .+++++++++.++|.+..++. +..||||||||++|
T Consensus 71 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~------~---~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~l 136 (201)
T cd03231 71 IARGLLYLGHAPGIKTTLSVLENLRFWHAD------H---SDEQVEEALARVGLNGFEDRP-----VAQLSAGQQRRVAL 136 (201)
T ss_pred hhhheEEeccccccCCCcCHHHHHHhhccc------c---cHHHHHHHHHHcCChhhhcCc-----hhhCCHHHHHHHHH
Confidence 567899999999998889999999875311 0 235678889999998766553 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEE
Q 006571 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 369 (640)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL 369 (640)
||+|+.+|++|||||||+|||+.++..+.+.|+++.++|+|+|++||++.. +...||+++++
T Consensus 137 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~-~~~~~~~~~~~ 198 (201)
T cd03231 137 ARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLG-LSEAGARELDL 198 (201)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchh-hhhccceeEec
Confidence 999999999999999999999999999999999988779999999999764 66789999887
No 272
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2e-40 Score=332.41 Aligned_cols=202 Identities=23% Similarity=0.332 Sum_probs=173.7
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh-h
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-S 226 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-~ 226 (640)
..|+++|++++| +++++|+++||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. .
T Consensus 10 ~~l~~~~l~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~i~~~~ 79 (214)
T PRK13543 10 PLLAAHALAFSR--------NEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLH--VESGQIQIDGKTATRGD 79 (214)
T ss_pred ceEEEeeEEEec--------CCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCCeeEEECCEEccchh
Confidence 369999999987 34579999999999999999999999999999999999643 568999999998753 2
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHH
Q 006571 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (640)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (640)
.++.++|++|++.+++.+|+.||+.+....+. . ..++.+.++++.++|.+..++. +..||||||||++|
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~---~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~l 148 (214)
T PRK13543 80 RSRFMAYLGHLPGLKADLSTLENLHFLCGLHG---R---RAKQMPGSALAIVGLAGYEDTL-----VRQLSAGQKKRLAL 148 (214)
T ss_pred hhhceEEeecCcccccCCcHHHHHHHHHHhcC---C---cHHHHHHHHHHHcCChhhccCC-----hhhCCHHHHHHHHH
Confidence 34569999999999998999999988654321 1 1234567888999998766654 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcC
Q 006571 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (640)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~ 371 (640)
||+++.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|+.
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~~~i~~l~~ 212 (214)
T PRK13543 149 ARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAY-AAPPVRTRMLTLEA 212 (214)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChh-hhhhhcceEEEEee
Confidence 99999999999999999999999999999999999888999999999975 57789999999864
No 273
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=2.1e-40 Score=374.51 Aligned_cols=224 Identities=23% Similarity=0.410 Sum_probs=186.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---CcccEEEECCEeCCh
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYSK 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~---~~~G~I~~~G~~~~~ 225 (640)
+|+++||+++|... ...+++|+|+||+|++||++||+||||||||||+|+|+|.+.+. +.+|+|.++|+++..
T Consensus 5 ~l~~~~l~~~~~~~----~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~ 80 (529)
T PRK15134 5 LLAIENLSVAFRQQ----QTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLH 80 (529)
T ss_pred eEEEeceEEEecCC----CCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEeccc
Confidence 69999999998311 11357999999999999999999999999999999999976421 258999999998742
Q ss_pred -------hcc-CcEEEEccCCC--CCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCcc---ccccccCcc
Q 006571 226 -------SLK-SKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC---QDTMIGGSF 292 (640)
Q Consensus 226 -------~~~-~~i~yV~Q~~~--l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~---~~t~vg~~~ 292 (640)
..+ +.+|||+|++. +++.+|+.||+.+...... ..+..+..++++++++.+||.+. .+. .
T Consensus 81 ~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~ 153 (529)
T PRK15134 81 ASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHR--GMRREAARGEILNCLDRVGIRQAAKRLTD-----Y 153 (529)
T ss_pred CCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhh-----C
Confidence 122 57999999974 6777899999986543211 23345566778999999999752 243 4
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcC
Q 006571 293 VRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGK 371 (640)
Q Consensus 293 ~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~ 371 (640)
+.+|||||||||+|||||+.+|++|||||||++||+.++..+++.|++++++ |+|||++||++. .+..+||+|++|++
T Consensus 154 ~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~dri~~l~~ 232 (529)
T PRK15134 154 PHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLS-IVRKLADRVAVMQN 232 (529)
T ss_pred CcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHH-HHHHhcCEEEEEEC
Confidence 5789999999999999999999999999999999999999999999999865 899999999976 46788999999999
Q ss_pred CeEEEecChHHHH
Q 006571 372 GSLLYFGKASEAM 384 (640)
Q Consensus 372 G~iv~~G~~~~~~ 384 (640)
|++++.|+++++.
T Consensus 233 G~i~~~g~~~~~~ 245 (529)
T PRK15134 233 GRCVEQNRAATLF 245 (529)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999988764
No 274
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=2e-40 Score=409.70 Aligned_cols=224 Identities=26% Similarity=0.395 Sum_probs=198.1
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (640)
..|+++||+++|. .+++.+|+||||.|++||++||+||||||||||+|+|+|.+. +++|+|.++|+++..
T Consensus 1936 ~~L~v~nLsK~Y~------~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~--ptsG~I~i~G~~i~~~~ 2007 (2272)
T TIGR01257 1936 DILRLNELTKVYS------GTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTT--VTSGDATVAGKSILTNI 2007 (2272)
T ss_pred ceEEEEEEEEEEC------CCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEECCEECcchH
Confidence 3699999999982 123679999999999999999999999999999999999654 568999999998852
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHH
Q 006571 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (640)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (640)
..++.|||+||++.+++.+||+|||.+.+..+ ..+.++.+++++++++.+||.+..|+. ++.|||||||||
T Consensus 2008 ~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~---g~~~~~~~~~v~~lLe~lgL~~~~dk~-----~~~LSGGqKqRL 2079 (2272)
T TIGR01257 2008 SDVHQNMGYCPQFDAIDDLLTGREHLYLYARLR---GVPAEEIEKVANWSIQSLGLSLYADRL-----AGTYSGGNKRKL 2079 (2272)
T ss_pred HHHhhhEEEEeccccCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHhcCC-----hhhCCHHHHHHH
Confidence 34678999999999999999999999877654 234445566788999999998877765 468999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHH
Q 006571 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (640)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (640)
+||+||+.+|+||||||||+|||+.+++.+++.|++++++|+|||++||++. ++..+||||++|++|+++..|+++++.
T Consensus 2080 slA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~me-e~e~lcDrV~IL~~G~i~~~Gs~q~Lk 2158 (2272)
T TIGR01257 2080 STAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSME-ECEALCTRLAIMVKGAFQCLGTIQHLK 2158 (2272)
T ss_pred HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999999999878999999999965 688899999999999999999999998
Q ss_pred HHHH
Q 006571 385 AYFS 388 (640)
Q Consensus 385 ~~f~ 388 (640)
..|.
T Consensus 2159 ~~~g 2162 (2272)
T TIGR01257 2159 SKFG 2162 (2272)
T ss_pred HHhC
Confidence 8775
No 275
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-40 Score=374.20 Aligned_cols=223 Identities=21% Similarity=0.384 Sum_probs=185.1
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++||++.|.. .+++++|+|+||+|++||+++|+||||||||||+|+|+|.+ .|+.+|+|.++|+++..
T Consensus 259 ~l~~~~l~~~~~~-----~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~-~~~~~G~i~~~g~~~~~~~~ 332 (506)
T PRK13549 259 ILEVRNLTAWDPV-----NPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAY-PGRWEGEIFIDGKPVKIRNP 332 (506)
T ss_pred eEEEecCcccccc-----ccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCC-CCCCCcEEEECCEECCCCCH
Confidence 6999999998721 12356999999999999999999999999999999999965 33368999999998642
Q ss_pred --hccCcEEEEccCC---CCCCCCCHHHHHHHHHhccCCC--CccHHHHHHHHHHHHHHcCCC-ccccccccCccCCcCC
Q 006571 226 --SLKSKIGFVTQDD---VLFPHLTVKETLTYAALLRLPN--TLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVS 297 (640)
Q Consensus 226 --~~~~~i~yV~Q~~---~l~~~lTV~Enl~~~~~~~~~~--~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LS 297 (640)
..++.++||+|++ .+++.+||.||+.++....... .....+..++++++++.++|. +..++. +..||
T Consensus 333 ~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS 407 (506)
T PRK13549 333 QQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELA-----IARLS 407 (506)
T ss_pred HHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccc-----cccCC
Confidence 2356799999995 4788899999998764211100 012334456788999999996 455543 46899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEe
Q 006571 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (640)
Q Consensus 298 GGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (640)
|||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||++++|++|+++..
T Consensus 408 gG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~-~~~~~~d~v~~l~~G~i~~~ 486 (506)
T PRK13549 408 GGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELP-EVLGLSDRVLVMHEGKLKGD 486 (506)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999999888999999999975 57789999999999999999
Q ss_pred cChHHH
Q 006571 378 GKASEA 383 (640)
Q Consensus 378 G~~~~~ 383 (640)
|+++++
T Consensus 487 ~~~~~~ 492 (506)
T PRK13549 487 LINHNL 492 (506)
T ss_pred eccccC
Confidence 987664
No 276
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=2.6e-40 Score=373.15 Aligned_cols=223 Identities=26% Similarity=0.438 Sum_probs=185.1
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEEC-CEe---C
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN-DHP---Y 223 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~-G~~---~ 223 (640)
..|+++||+++|... ..+.+++|+|+||+|++||+++|+||||||||||+|+|+|.+. +.+|+|.++ |.+ +
T Consensus 278 ~~l~~~~l~~~~~~~---~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~~g~~~~~~ 352 (520)
T TIGR03269 278 PIIKVRNVSKRYISV---DRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE--PTSGEVNVRVGDEWVDM 352 (520)
T ss_pred ceEEEeccEEEeccC---CCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEEecCCccccc
Confidence 369999999998310 0123579999999999999999999999999999999999653 568999996 532 2
Q ss_pred C-------hhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCc-----cccccccCc
Q 006571 224 S-------KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-----CQDTMIGGS 291 (640)
Q Consensus 224 ~-------~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-----~~~t~vg~~ 291 (640)
. ...+++++||+|++.+++.+||.||+.+..... ...+..++++.++++.+||.+ ..++
T Consensus 353 ~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~----- 423 (520)
T TIGR03269 353 TKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDK----- 423 (520)
T ss_pred cccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhC-----
Confidence 1 123567999999999999999999999764321 223334567889999999964 2343
Q ss_pred cCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEc
Q 006571 292 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLG 370 (640)
Q Consensus 292 ~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~ 370 (640)
.+..|||||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++ |.|||++||++. .+.++||++++|+
T Consensus 424 ~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~d~i~~l~ 502 (520)
T TIGR03269 424 YPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD-FVLDVCDRAALMR 502 (520)
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhCCEEEEEE
Confidence 45789999999999999999999999999999999999999999999999764 899999999975 5778999999999
Q ss_pred CCeEEEecChHHHHH
Q 006571 371 KGSLLYFGKASEAMA 385 (640)
Q Consensus 371 ~G~iv~~G~~~~~~~ 385 (640)
+|++++.|+++++.+
T Consensus 503 ~G~i~~~g~~~~~~~ 517 (520)
T TIGR03269 503 DGKIVKIGDPEEIVE 517 (520)
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999988753
No 277
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.5e-40 Score=334.29 Aligned_cols=208 Identities=27% Similarity=0.445 Sum_probs=169.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++|++++|. ..++.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 2 ~l~~~~l~~~~~------~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~ 73 (221)
T cd03244 2 DIEFKNVSLRYR------PNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVE--LSSGSILIDGVDISKIGL 73 (221)
T ss_pred cEEEEEEEEecC------CCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCCEEEECCEEhHhCCH
Confidence 378999999982 123579999999999999999999999999999999999643 568999999998742
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccc-------cccccCccCCcCC
Q 006571 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ-------DTMIGGSFVRGVS 297 (640)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~t~vg~~~~~~LS 297 (640)
.+++.++|++|++.+++ .||+||+.+... ... +++.+.++.+++.+.. ++.. +..+..||
T Consensus 74 ~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~------~~~----~~~~~~~~~~~l~~~~~~l~~~l~~~~-~~~~~~LS 141 (221)
T cd03244 74 HDLRSRISIIPQDPVLFS-GTIRSNLDPFGE------YSD----EELWQALERVGLKEFVESLPGGLDTVV-EEGGENLS 141 (221)
T ss_pred HHHhhhEEEECCCCcccc-chHHHHhCcCCC------CCH----HHHHHHHHHhCcHHHHHhccccccccc-ccCCCcCC
Confidence 45678999999999886 599999975311 111 2344455555554332 2222 23567899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEe
Q 006571 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (640)
Q Consensus 298 GGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (640)
||||||++|||+|+.+|+++||||||+|||+.++..+.+.|+++.+ +.|||++||++.. + ..||++++|++|++++.
T Consensus 142 ~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~-~~~d~i~~l~~g~~~~~ 218 (221)
T cd03244 142 VGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRLDT-I-IDSDRILVLDKGRVVEF 218 (221)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHH-H-hhCCEEEEEECCeEEec
Confidence 9999999999999999999999999999999999999999999864 6899999999754 4 45999999999999988
Q ss_pred cC
Q 006571 378 GK 379 (640)
Q Consensus 378 G~ 379 (640)
|+
T Consensus 219 ~~ 220 (221)
T cd03244 219 DS 220 (221)
T ss_pred CC
Confidence 76
No 278
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=2.6e-40 Score=339.68 Aligned_cols=202 Identities=25% Similarity=0.462 Sum_probs=172.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhcc
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~ 228 (640)
.|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++| +
T Consensus 4 ~l~~~~l~~~~--------~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~~-------~ 66 (251)
T PRK09544 4 LVSLENVSVSF--------GQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVA--PDEGVIKRNG-------K 66 (251)
T ss_pred EEEEeceEEEE--------CCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECC-------c
Confidence 68999999998 34579999999999999999999999999999999999653 4689999987 2
Q ss_pred CcEEEEccCCCCCCC--CCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHH
Q 006571 229 SKIGFVTQDDVLFPH--LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (640)
Q Consensus 229 ~~i~yV~Q~~~l~~~--lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (640)
..++|++|++.+++. .|+.+++.+. + ... .+++.++++.+||.+..++. +..||||||||++|
T Consensus 67 ~~i~~v~q~~~~~~~l~~~~~~~~~~~-----~-~~~----~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~qrv~l 131 (251)
T PRK09544 67 LRIGYVPQKLYLDTTLPLTVNRFLRLR-----P-GTK----KEDILPALKRVQAGHLIDAP-----MQKLSGGETQRVLL 131 (251)
T ss_pred cCEEEeccccccccccChhHHHHHhcc-----c-ccc----HHHHHHHHHHcCChHHHhCC-----hhhCCHHHHHHHHH
Confidence 469999999888765 3788877542 1 111 23467889999998766653 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHH
Q 006571 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (640)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (640)
||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||+|++|++ ++++.|+++++.
T Consensus 132 aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~-~i~~~~d~i~~l~~-~i~~~g~~~~~~ 208 (251)
T PRK09544 132 ARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLH-LVMAKTDEVLCLNH-HICCSGTPEVVS 208 (251)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEECC-ceEeeCCHHHHh
Confidence 99999999999999999999999999999999999765 899999999975 56788999999964 799999988764
No 279
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.1e-42 Score=326.52 Aligned_cols=220 Identities=25% Similarity=0.456 Sum_probs=195.0
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC----
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~---- 224 (640)
+++++||+++| +.+.||+|+|++|++|.+++|+|||||||||||.+++ |+.. .++|+|+++|.++.
T Consensus 1 MI~i~nv~K~y--------~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~s-RL~~-~d~G~i~i~g~~~~~~~s 70 (252)
T COG4604 1 MITIENVSKSY--------GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMS-RLLK-KDSGEITIDGLELTSTPS 70 (252)
T ss_pred CeeehhhhHhh--------CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHH-Hhcc-ccCceEEEeeeecccCCh
Confidence 47899999998 5788999999999999999999999999999999999 5653 56899999999985
Q ss_pred hhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHH
Q 006571 225 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (640)
Q Consensus 225 ~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (640)
+.+.++++.+-|+..+-..+||+|-+.|+..... ..-..++++..+++.++.++|.+..|.. ..+||||||||.
T Consensus 71 ~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYS-qGRlt~eD~~~I~~aieyl~L~~l~dry-----Ld~LSGGQrQRA 144 (252)
T COG4604 71 KELAKKLSILKQENHINSRLTVRDLVGFGRFPYS-QGRLTKEDRRIINEAIEYLHLEDLSDRY-----LDELSGGQRQRA 144 (252)
T ss_pred HHHHHHHHHHHhhchhhheeEHHHHhhcCCCccc-CCCCchHHHHHHHHHHHHhcccchHHHh-----HHhcccchhhhh
Confidence 3577889999999999889999999999853221 2233566778899999999999888764 478999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHH
Q 006571 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (640)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (640)
-||+.|+.+.+.++||||.++||...+..+++.|++++++ |+||+++.||.+. +..++|+|+-|++|+++..|+++|+
T Consensus 145 fIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINf-AS~YsD~IVAlK~G~vv~~G~~~ei 223 (252)
T COG4604 145 FIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINF-ASCYSDHIVALKNGKVVKQGSPDEI 223 (252)
T ss_pred hhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccH-HHhhhhheeeecCCEEEecCCHHHh
Confidence 9999999999999999999999999999999999999976 9999999999875 5678899999999999999999998
Q ss_pred HH
Q 006571 384 MA 385 (640)
Q Consensus 384 ~~ 385 (640)
+.
T Consensus 224 i~ 225 (252)
T COG4604 224 IQ 225 (252)
T ss_pred cC
Confidence 64
No 280
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=6.5e-40 Score=405.28 Aligned_cols=223 Identities=21% Similarity=0.369 Sum_probs=196.7
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (640)
..|+++||++.|. .+++.+|+|+|+++++||+++|+||||||||||+|+|+|.+. +++|+|.++|+++..
T Consensus 927 ~~L~I~nLsK~y~------~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~--PtsG~I~i~G~dI~~~~ 998 (2272)
T TIGR01257 927 PGVCVKNLVKIFE------PSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLP--PTSGTVLVGGKDIETNL 998 (2272)
T ss_pred ceEEEEeEEEEec------CCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCC--CCceEEEECCEECcchH
Confidence 4799999999982 124679999999999999999999999999999999999654 568999999999853
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHH
Q 006571 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (640)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (640)
..|+.+|||+|++.+++.+||+|||.|.+..+. .+.++.+++++++++.+||.+..++. +++|||||||||
T Consensus 999 ~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg---~~~~~~~~~v~~lL~~vgL~~~~~~~-----~~~LSGGqKQRL 1070 (2272)
T TIGR01257 999 DAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKG---RSWEEAQLEMEAMLEDTGLHHKRNEE-----AQDLSGGMQRKL 1070 (2272)
T ss_pred HHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHH
Confidence 356789999999999999999999999876542 33445566789999999998877654 468999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHH
Q 006571 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (640)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (640)
+||+||+.+|+||||||||+|||+.++..+++.|++++ +|+|||++||++. ++..+||||++|++|+++..|+++++.
T Consensus 1071 sLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmd-ea~~laDrI~iL~~GkL~~~Gs~~~Lk 1148 (2272)
T TIGR01257 1071 SVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMD-EADLLGDRIAIISQGRLYCSGTPLFLK 1148 (2272)
T ss_pred HHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 99999999999999999999999999999999999995 5999999999965 577899999999999999999999998
Q ss_pred HHHH
Q 006571 385 AYFS 388 (640)
Q Consensus 385 ~~f~ 388 (640)
+.|.
T Consensus 1149 ~~~g 1152 (2272)
T TIGR01257 1149 NCFG 1152 (2272)
T ss_pred HhcC
Confidence 7764
No 281
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=3.1e-41 Score=418.09 Aligned_cols=214 Identities=21% Similarity=0.369 Sum_probs=183.1
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC---
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--- 224 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~--- 224 (640)
..|+|+||+|+|+ .+.+++|+||||+|+|||.+||+|+||||||||+++|.|. ++ .+|+|.+||.|+.
T Consensus 1216 g~I~f~nVs~~Y~------~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl-~~--~~G~I~IdG~di~~i~ 1286 (1490)
T TIGR01271 1216 GQMDVQGLTAKYT------EAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRL-LS--TEGEIQIDGVSWNSVT 1286 (1490)
T ss_pred CeEEEEEEEEEeC------CCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhh-cC--CCcEEEECCEEcccCC
Confidence 4699999999993 2346899999999999999999999999999999999975 43 4899999999986
Q ss_pred -hhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCC-------CccccccccCccCCcC
Q 006571 225 -KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-------ERCQDTMIGGSFVRGV 296 (640)
Q Consensus 225 -~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~t~vg~~~~~~L 296 (640)
+.+|++|+||||++.+|+. ||+|||.... ..+ ++++.++++..+| +++.|+.+|+. ...|
T Consensus 1287 ~~~lR~~is~IpQdp~LF~G-TIR~NLdp~~------~~t----deei~~aL~~~~L~~~i~~lp~GLdt~v~e~-G~nL 1354 (1490)
T TIGR01271 1287 LQTWRKAFGVIPQKVFIFSG-TFRKNLDPYE------QWS----DEEIWKVAEEVGLKSVIEQFPDKLDFVLVDG-GYVL 1354 (1490)
T ss_pred HHHHHhceEEEeCCCccCcc-CHHHHhCccc------CCC----HHHHHHHHHHCCCHHHHHhCccccccccccC-CCcC
Confidence 3578999999999999986 9999996421 122 2345555655544 46788988764 4579
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEE
Q 006571 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (640)
Q Consensus 297 SGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (640)
|||||||++|||||+++|+|||||||||+||+.+...|.+.|++.. +++|||+++|+++. ...||+|++|++|+|++
T Consensus 1355 SgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~t--i~~~DrIlvL~~G~ivE 1431 (1490)
T TIGR01271 1355 SNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVEA--LLECQQFLVIEGSSVKQ 1431 (1490)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH--HHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999865 47999999999864 46699999999999999
Q ss_pred ecChHHHHH
Q 006571 377 FGKASEAMA 385 (640)
Q Consensus 377 ~G~~~~~~~ 385 (640)
.|+|+++++
T Consensus 1432 ~g~p~~Ll~ 1440 (1490)
T TIGR01271 1432 YDSIQKLLN 1440 (1490)
T ss_pred eCCHHHHHc
Confidence 999999873
No 282
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=5.2e-40 Score=325.36 Aligned_cols=194 Identities=25% Similarity=0.391 Sum_probs=165.2
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---h
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---S 226 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---~ 226 (640)
|+++|++++| +++.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. .
T Consensus 1 l~~~~l~~~~--------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~ 70 (198)
T TIGR01189 1 LAARNLACSR--------GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLR--PDSGEVRWNGTALAEQRDE 70 (198)
T ss_pred CEEEEEEEEE--------CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEEcccchHH
Confidence 4789999988 34579999999999999999999999999999999999543 568999999998642 3
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHH
Q 006571 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (640)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (640)
.++.++|++|++.+++.+||.||+.+....+. . .++++.++++.++|.+..++. +..||||||||++|
T Consensus 71 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~----~---~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~l 138 (198)
T TIGR01189 71 PHRNILYLGHLPGLKPELSALENLHFWAAIHG----G---AQRTIEDALAAVGLTGFEDLP-----AAQLSAGQQRRLAL 138 (198)
T ss_pred hhhheEEeccCcccccCCcHHHHHHHHHHHcC----C---cHHHHHHHHHHcCCHHHhcCC-----hhhcCHHHHHHHHH
Confidence 45789999999999988999999988654321 1 134577889999998766654 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEE
Q 006571 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLIL 368 (640)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~v 368 (640)
||||+.+|++++|||||+|||+.++..+.+.|++++++|.|||++||++.. -.|++++.
T Consensus 139 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~---~~~~~~~~ 197 (198)
T TIGR01189 139 ARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLG---LVEARELR 197 (198)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccc---ccceEEee
Confidence 999999999999999999999999999999999998779999999999754 34677764
No 283
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=3.5e-40 Score=333.13 Aligned_cols=202 Identities=26% Similarity=0.357 Sum_probs=168.7
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccC
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~ 229 (640)
+.++|++++| +++++|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 23 l~~~~~~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~---- 88 (224)
T cd03220 23 LGILGRKGEV--------GEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP--PDSGTVTVRGRVSSL---- 88 (224)
T ss_pred hhhhhhhhhc--------CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEchh----
Confidence 5667777766 45789999999999999999999999999999999999643 568999999987531
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHH
Q 006571 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (640)
Q Consensus 230 ~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~a 309 (640)
..+...+++.+||+||+.+..... .....+.++++.++++.++|++..++. +..||||||||++|||+
T Consensus 89 ----~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~lara 156 (224)
T cd03220 89 ----LGLGGGFNPELTGRENIYLNGRLL---GLSRKEIDEKIDEIIEFSELGDFIDLP-----VKTYSSGMKARLAFAIA 156 (224)
T ss_pred ----hcccccCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHHHHHHHHHH
Confidence 112234556789999999875432 123344455678889999998777654 46899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEec
Q 006571 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (640)
Q Consensus 310 L~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (640)
|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|++++.|
T Consensus 157 l~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 157 TALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPS-SIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999877899999999965 466789999999999998765
No 284
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.8e-40 Score=322.08 Aligned_cols=171 Identities=36% Similarity=0.631 Sum_probs=153.3
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (640)
|+++|++++| +++++|+|+||++++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 1 i~~~~l~~~~--------~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~ 70 (178)
T cd03229 1 LELKNVSKRY--------GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE--PDSGSILIDGEDLTDLEDE 70 (178)
T ss_pred CEEEEEEEEE--------CCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccchh
Confidence 4689999998 24579999999999999999999999999999999999643 468999999988642
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHH
Q 006571 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (640)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (640)
..++.++|++|++.+++.+|++||+.+. ||||||||
T Consensus 71 ~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~------------------------------------------lS~G~~qr 108 (178)
T cd03229 71 LPPLRRRIGMVFQDFALFPHLTVLENIALG------------------------------------------LSGGQQQR 108 (178)
T ss_pred HHHHhhcEEEEecCCccCCCCCHHHheeec------------------------------------------CCHHHHHH
Confidence 3467899999999999889999998642 99999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCe
Q 006571 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (640)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~ 373 (640)
++|||||+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|+++|++. .+.+.||++++|++|+
T Consensus 109 ~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 109 VALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLD-EAARLADRVVVLRDGK 178 (178)
T ss_pred HHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCCC
Confidence 99999999999999999999999999999999999999887 899999999965 4667899999999985
No 285
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4.7e-40 Score=326.26 Aligned_cols=193 Identities=26% Similarity=0.391 Sum_probs=165.4
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---h
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---S 226 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---~ 226 (640)
|+++||+++| +++++|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|+++|+++.. .
T Consensus 2 l~~~~l~~~~--------~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~v~~~g~~~~~~~~~ 71 (200)
T PRK13540 2 LDVIELDFDY--------HDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLN--PEKGEILFERQSIKKDLCT 71 (200)
T ss_pred EEEEEEEEEe--------CCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeeEEECCCccccCHHH
Confidence 7899999998 34579999999999999999999999999999999999643 568999999998742 3
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHH
Q 006571 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (640)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (640)
++++++|++|++.+++.+||+||+.+..... . .+..+.++++.+++.+..+.. +..||||||||++|
T Consensus 72 ~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~------~--~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~~rv~l 138 (200)
T PRK13540 72 YQKQLCFVGHRSGINPYLTLRENCLYDIHFS------P--GAVGITELCRLFSLEHLIDYP-----CGLLSSGQKRQVAL 138 (200)
T ss_pred HHhheEEeccccccCcCCCHHHHHHHHHhcC------c--chHHHHHHHHHcCCchhhhCC-----hhhcCHHHHHHHHH
Confidence 5678999999999988899999999864211 1 124678899999997655543 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEE
Q 006571 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLI 367 (640)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~ 367 (640)
||+|+.+|++|+|||||+|||+.++..+.+.|++++++|.|||++||++.. ...+|..+
T Consensus 139 aral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~--~~~~d~~~ 197 (200)
T PRK13540 139 LRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLP--LNKADYEE 197 (200)
T ss_pred HHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchh--ccccchhh
Confidence 999999999999999999999999999999999987779999999999654 46677654
No 286
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.1e-40 Score=357.87 Aligned_cols=216 Identities=26% Similarity=0.442 Sum_probs=192.5
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC---
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--- 224 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~--- 224 (640)
..++++|++++| +..++|+||||++++||++||+|.||||||||+|+|+|.. . +++|+|++||++..
T Consensus 7 ~ll~~~~i~K~F--------ggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~-~-p~~G~I~~~G~~~~~~s 76 (500)
T COG1129 7 PLLELRGISKSF--------GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVY-P-PDSGEILIDGKPVAFSS 76 (500)
T ss_pred ceeeeecceEEc--------CCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcc-c-CCCceEEECCEEccCCC
Confidence 369999999998 5678999999999999999999999999999999999954 3 56999999999874
Q ss_pred --hhccCcEEEEccCCCCCCCCCHHHHHHHHHhccC-CCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHH
Q 006571 225 --KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRL-PNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (640)
Q Consensus 225 --~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~-~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 301 (640)
+....-|+.|+|+..|+|+|||.|||.++...+. ..-++.....+++.++|+.+|+....++.+ .+||+|||
T Consensus 77 p~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v-----~~Lsiaqr 151 (500)
T COG1129 77 PRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLV-----GDLSIAQR 151 (500)
T ss_pred HHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhh-----hhCCHHHH
Confidence 2345679999999999999999999998865443 123567778888999999999964466655 58999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecC
Q 006571 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (640)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (640)
|-|+|||||..+++||||||||++|+......+.+.++++.++|.+||+|||++. +++++||||.||.||+.+..++
T Consensus 152 Q~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~-Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 152 QMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLD-EVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHH-HHHHhcCEEEEEeCCEEeeecc
Confidence 9999999999999999999999999999999999999999999999999999965 6999999999999999998887
No 287
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-39 Score=333.87 Aligned_cols=218 Identities=22% Similarity=0.308 Sum_probs=182.5
Q ss_pred eeEEEEeEEEEEeecc------------ccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccE
Q 006571 148 IYLKFTDVTYKVILKG------------MTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGS 215 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~------------~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~ 215 (640)
..++++||++.|.... +.....+++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~--p~~G~ 80 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLS--PTVGK 80 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceE
Confidence 4689999988886421 011234679999999999999999999999999999999999653 56899
Q ss_pred EEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCc
Q 006571 216 ITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRG 295 (640)
Q Consensus 216 I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~ 295 (640)
|.++|. +++++|++.+++.+|+.||+.+..... ....++..+.+.++++.++|.+..+.. +..
T Consensus 81 I~~~g~---------~~~~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~ 143 (264)
T PRK13546 81 VDRNGE---------VSVIAISAGLSGQLTGIENIEFKMLCM---GFKRKEIKAMTPKIIEFSELGEFIYQP-----VKK 143 (264)
T ss_pred EEECCE---------EeEEecccCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----ccc
Confidence 999985 467788887888899999998765432 123444455677888888987766653 468
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEE
Q 006571 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (640)
Q Consensus 296 LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv 375 (640)
||||||||++||+||+.+|++|||||||+|||+.++..+++.|.++++.|+|||+++|++. .+.+.||+|++|++|+++
T Consensus 144 LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~-~i~~~~d~i~~l~~G~i~ 222 (264)
T PRK13546 144 YSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLG-QVRQFCTKIAWIEGGKLK 222 (264)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHcCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999999877999999999965 467889999999999999
Q ss_pred EecChHHHHH
Q 006571 376 YFGKASEAMA 385 (640)
Q Consensus 376 ~~G~~~~~~~ 385 (640)
+.|+++++.+
T Consensus 223 ~~g~~~~~~~ 232 (264)
T PRK13546 223 DYGELDDVLP 232 (264)
T ss_pred EeCCHHHHHH
Confidence 9999988765
No 288
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=1.7e-40 Score=335.10 Aligned_cols=211 Identities=32% Similarity=0.520 Sum_probs=169.1
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (640)
..|+++|++++|.. +..+++|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 10 ~~l~~~~l~~~~~~-----~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~ 82 (226)
T cd03248 10 GIVKFQNVTFAYPT-----RPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQ--PQGGQVLLDGKPISQYE 82 (226)
T ss_pred ceEEEEEEEEEeCC-----CCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCcEEEECCCchHHcC
Confidence 46999999999831 112469999999999999999999999999999999999653 568999999987642
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHc--CCCccccccccCccCCcCCHHHH
Q 006571 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL--GLERCQDTMIGGSFVRGVSGGER 301 (640)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~l--gL~~~~~t~vg~~~~~~LSGGqr 301 (640)
..++.++|++|++.+++ .||+||+.++.................++++++.+ |+.+..+. .+..||||||
T Consensus 83 ~~~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~-----~~~~LSgG~~ 156 (226)
T cd03248 83 HKYLHSKVSLVGQEPVLFA-RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGE-----KGSQLSGGQK 156 (226)
T ss_pred HHHHHhhEEEEecccHHHh-hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhc-----CCCcCCHHHH
Confidence 34577999999998886 59999998754211000000111122356778877 66554443 3578999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeE
Q 006571 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (640)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~i 374 (640)
|||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++.. + ..||+|++|++|++
T Consensus 157 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~-~~~d~i~~l~~g~i 226 (226)
T cd03248 157 QRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLST-V-ERADQILVLDGGRI 226 (226)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHHH-H-HhCCEEEEecCCcC
Confidence 999999999999999999999999999999999999999875 6899999999764 5 45999999999974
No 289
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=4.8e-40 Score=338.71 Aligned_cols=217 Identities=23% Similarity=0.360 Sum_probs=172.5
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (640)
..|+++|++++|. ..++.+|+|+||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|+++..
T Consensus 18 ~~i~~~~l~~~~~------~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~i~g~~i~~~~ 89 (257)
T cd03288 18 GEIKIHDLCVRYE------NNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVD--IFDGKIVIDGIDISKLP 89 (257)
T ss_pred ceEEEEEEEEEeC------CCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccC--CCCCeEEECCEEhhhCC
Confidence 3699999999982 122579999999999999999999999999999999999653 568999999998743
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHH-----HHHHHHHHHcCCCccccccccCccCCcCCH
Q 006571 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKE-----KRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (640)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~-----~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (640)
.+++.++||+|++.+++ .|++||+.... ........ ..+.+.++.+ +...++.++ ..+..|||
T Consensus 90 ~~~~~~~i~~v~q~~~l~~-~tv~~nl~~~~------~~~~~~~~~~l~~~~l~~~~~~~--~~~l~~~~~-~~~~~LS~ 159 (257)
T cd03288 90 LHTLRSRLSIILQDPILFS-GSIRFNLDPEC------KCTDDRLWEALEIAQLKNMVKSL--PGGLDAVVT-EGGENFSV 159 (257)
T ss_pred HHHHhhhEEEECCCCcccc-cHHHHhcCcCC------CCCHHHHHHHHHHhCcHHHHhhc--ccccCcEec-cCCCcCCH
Confidence 45678999999999887 49999986421 01111111 1123333333 112233332 24578999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEec
Q 006571 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (640)
Q Consensus 299 GqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (640)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|+++. ++.|||+++|++.. +. .||+|++|++|++++.|
T Consensus 160 G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~~-~~-~~dri~~l~~G~i~~~g 236 (257)
T cd03288 160 GQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRVST-IL-DADLVLVLSRGILVECD 236 (257)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecChHH-HH-hCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999999875 48999999999864 44 49999999999999999
Q ss_pred ChHHHHH
Q 006571 379 KASEAMA 385 (640)
Q Consensus 379 ~~~~~~~ 385 (640)
+++++.+
T Consensus 237 ~~~~~~~ 243 (257)
T cd03288 237 TPENLLA 243 (257)
T ss_pred CHHHHHh
Confidence 9988754
No 290
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=1.1e-39 Score=328.83 Aligned_cols=208 Identities=25% Similarity=0.409 Sum_probs=169.5
Q ss_pred EEEEeEEEEEeeccccccc-cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEEC--CE--eCC
Q 006571 150 LKFTDVTYKVILKGMTSSE-EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN--DH--PYS 224 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~--G~--~~~ 224 (640)
|+++||+++|..+. +.+ .+.+|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++ |. ++.
T Consensus 2 l~~~~l~~~~~~~~--~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~~~g~~~~~~ 77 (224)
T TIGR02324 2 LEVEDLSKTFTLHQ--QGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYL--PDSGRILVRHEGAWVDLA 77 (224)
T ss_pred EEEEeeEEEeeccc--CCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEEecCCCccchh
Confidence 78999999984210 011 2479999999999999999999999999999999999643 468999998 42 432
Q ss_pred h-------hc-cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCcc-ccccccCccCCc
Q 006571 225 K-------SL-KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC-QDTMIGGSFVRG 295 (640)
Q Consensus 225 ~-------~~-~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~t~vg~~~~~~ 295 (640)
. .. ++.++|++|++.+++.+||.||+.+..... ........+++.++++.+||.+. .+. .+.+
T Consensus 78 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~ 149 (224)
T TIGR02324 78 QASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIPERLWHL-----PPAT 149 (224)
T ss_pred hcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhhC-----Cccc
Confidence 1 12 357999999999999999999999865322 12334445678889999999753 243 3578
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEc
Q 006571 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (640)
Q Consensus 296 LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~ 370 (640)
||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. .+..+||+++.+.
T Consensus 150 LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~-~~~~~~d~i~~~~ 223 (224)
T TIGR02324 150 FSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEE-VRELVADRVMDVT 223 (224)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceeEecC
Confidence 9999999999999999999999999999999999999999999999877999999999954 4567899998764
No 291
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.5e-40 Score=307.30 Aligned_cols=216 Identities=31% Similarity=0.516 Sum_probs=189.5
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeC--C--
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY--S-- 224 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~--~-- 224 (640)
.|+++++++.| +...+|.||+++.+.||.+.++||||||||||++.|. .+. .+.+|+..+.|... +
T Consensus 2 sirv~~in~~y--------g~~q~lfdi~l~~~~getlvllgpsgagkssllr~ln-lle-~p~sg~l~ia~~~fd~s~~ 71 (242)
T COG4161 2 SIQLNGINCFY--------GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLN-LLE-MPRSGTLNIAGNHFDFSKT 71 (242)
T ss_pred ceEEccccccc--------ccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHH-HHh-CCCCCeEEecccccccccC
Confidence 47899999988 5668999999999999999999999999999999998 444 35689999977643 2
Q ss_pred ------hhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCH
Q 006571 225 ------KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (640)
Q Consensus 225 ------~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (640)
..+|+.+|+|+|+..++|++||.|||.-+.. +. ..+++++...++.++++.+.|.+.+|. ++-.|||
T Consensus 72 ~~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap~-kv-~gl~~~qa~~~a~ellkrlrl~~~adr-----~plhlsg 144 (242)
T COG4161 72 PSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPC-RV-LGLSKDQALARAEKLLKRLRLKPYADR-----YPLHLSG 144 (242)
T ss_pred ccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhhH-HH-hCCCHHHHHHHHHHHHHHhcccccccc-----Cceeccc
Confidence 1478999999999999999999999976432 21 246788888899999999999988875 4568999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEec
Q 006571 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (640)
Q Consensus 299 GqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (640)
||+|||+|||||+.+|++|++||||++|||+-..++++++++++..|.|-+++||... ...+.+.+|+.|++|+|++.|
T Consensus 145 gqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~-va~k~as~vvyme~g~ive~g 223 (242)
T COG4161 145 GQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVE-VARKTASRVVYMENGHIVEQG 223 (242)
T ss_pred chhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehh-HHHhhhhheEeeecCeeEeec
Confidence 9999999999999999999999999999999999999999999999999999999965 356779999999999999999
Q ss_pred ChHH
Q 006571 379 KASE 382 (640)
Q Consensus 379 ~~~~ 382 (640)
+++-
T Consensus 224 ~a~~ 227 (242)
T COG4161 224 DASC 227 (242)
T ss_pred chhh
Confidence 8753
No 292
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=4.9e-40 Score=320.30 Aligned_cols=175 Identities=33% Similarity=0.597 Sum_probs=153.9
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---h
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---S 226 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---~ 226 (640)
|+++|++++|.. .++++|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. .
T Consensus 1 i~~~~~~~~~~~------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~ 72 (178)
T cd03247 1 LSINNVSFSYPE------QEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLK--PQQGEITLDGVPVSDLEKA 72 (178)
T ss_pred CEEEEEEEEeCC------CCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCCEEEECCEEHHHHHHH
Confidence 478999999821 12469999999999999999999999999999999999643 568999999997642 3
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHH
Q 006571 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (640)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (640)
+++.++|++|++.+++ .|++||+ +..||||||||++|
T Consensus 73 ~~~~i~~~~q~~~~~~-~tv~~~i------------------------------------------~~~LS~G~~qrv~l 109 (178)
T cd03247 73 LSSLISVLNQRPYLFD-TTLRNNL------------------------------------------GRRFSGGERQRLAL 109 (178)
T ss_pred HHhhEEEEccCCeeec-ccHHHhh------------------------------------------cccCCHHHHHHHHH
Confidence 5678999999998886 6999987 24799999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEec
Q 006571 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (640)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (640)
||||+.+|++|||||||+|||+.++..+++.|+++. ++.|||+++|++.. + ..||++++|++|++++.|
T Consensus 110 aral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~-~-~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 110 ARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHLTG-I-EHMDKILFLENGKIIMQG 178 (178)
T ss_pred HHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HhCCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999985 48999999999764 4 569999999999998765
No 293
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=5.1e-40 Score=318.85 Aligned_cols=169 Identities=34% Similarity=0.622 Sum_probs=150.7
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (640)
++++|++++|. ...+++++|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 1 i~~~~l~~~~~------~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~ 72 (173)
T cd03246 1 LEVENVSFRYP------GAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLR--PTSGRVRLDGADISQWDPN 72 (173)
T ss_pred CEEEEEEEEcC------CCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccC--CCCCeEEECCEEcccCCHH
Confidence 47899999882 123569999999999999999999999999999999999653 468999999998742
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHH
Q 006571 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (640)
Q Consensus 226 ~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (640)
.+++.++|++|++.+++. ||+||+ ||||||||++
T Consensus 73 ~~~~~i~~~~q~~~~~~~-tv~~~l---------------------------------------------LS~G~~qrv~ 106 (173)
T cd03246 73 ELGDHVGYLPQDDELFSG-SIAENI---------------------------------------------LSGGQRQRLG 106 (173)
T ss_pred HHHhheEEECCCCccccC-cHHHHC---------------------------------------------cCHHHHHHHH
Confidence 346789999999988874 999987 9999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeE
Q 006571 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (640)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~i 374 (640)
|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++. .+ +.||++++|++|++
T Consensus 107 la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~-~~~d~v~~l~~G~i 173 (173)
T cd03246 107 LARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPE-TL-ASADRILVLEDGRV 173 (173)
T ss_pred HHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEEECCCC
Confidence 999999999999999999999999999999999999877999999999975 34 68999999999974
No 294
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.2e-40 Score=369.24 Aligned_cols=215 Identities=23% Similarity=0.426 Sum_probs=180.0
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (640)
..|+++|+++.| +.+|+|+||+|++||+++|+||||||||||+|+|+|... +.+|+|.++|+++..
T Consensus 264 ~~l~~~~l~~~~----------~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~--p~~G~I~~~g~~~~~~~ 331 (510)
T PRK09700 264 TVFEVRNVTSRD----------RKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDK--RAGGEIRLNGKDISPRS 331 (510)
T ss_pred cEEEEeCccccC----------CCcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc--CCCCeEEECCEECCCCC
Confidence 369999999754 138999999999999999999999999999999999653 468999999988642
Q ss_pred ---hccCcEEEEccC---CCCCCCCCHHHHHHHHHhcc---CCC--C-ccHHHHHHHHHHHHHHcCCC-ccccccccCcc
Q 006571 226 ---SLKSKIGFVTQD---DVLFPHLTVKETLTYAALLR---LPN--T-LTKQQKEKRAIDVINELGLE-RCQDTMIGGSF 292 (640)
Q Consensus 226 ---~~~~~i~yV~Q~---~~l~~~lTV~Enl~~~~~~~---~~~--~-~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~ 292 (640)
..++.+|||+|+ +.+++.+||.||+.++...+ ... . ......+++++++++.++|. +..++.
T Consensus 332 ~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~----- 406 (510)
T PRK09700 332 PLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQN----- 406 (510)
T ss_pred HHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCc-----
Confidence 235679999998 46888999999998753211 000 0 11223345678999999996 556654
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCC
Q 006571 293 VRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKG 372 (640)
Q Consensus 293 ~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G 372 (640)
+..|||||||||+|||+|+.+|+||||||||+|||+.++..+++.|++++++|+|||++|||+. .+.+.||++++|++|
T Consensus 407 ~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~G 485 (510)
T PRK09700 407 ITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELP-EIITVCDRIAVFCEG 485 (510)
T ss_pred cccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEECC
Confidence 4689999999999999999999999999999999999999999999999878999999999965 577899999999999
Q ss_pred eEEEecCh
Q 006571 373 SLLYFGKA 380 (640)
Q Consensus 373 ~iv~~G~~ 380 (640)
++++.++.
T Consensus 486 ~i~~~~~~ 493 (510)
T PRK09700 486 RLTQILTN 493 (510)
T ss_pred EEEEEecC
Confidence 99988865
No 295
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=5.2e-40 Score=368.11 Aligned_cols=209 Identities=22% Similarity=0.343 Sum_probs=178.3
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
+|+++||+++| +++.+|+|+||+|++|++++|+||||||||||+|+|+|.+. +.+|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~--------~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~--p~~G~i~~~~~~~~~~~~ 72 (490)
T PRK10938 3 SLQISQGTFRL--------SDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELP--LLSGERQSQFSHITRLSF 72 (490)
T ss_pred eEEEEeEEEEc--------CCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCceEEECCcccccCCH
Confidence 58999999998 24569999999999999999999999999999999999653 568999999976532
Q ss_pred -hccCcEEEEccCCCC--C-C-----CCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcC
Q 006571 226 -SLKSKIGFVTQDDVL--F-P-----HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296 (640)
Q Consensus 226 -~~~~~i~yV~Q~~~l--~-~-----~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~L 296 (640)
..++.++|++|++.+ + + .+||+|++.+. ....++++++++.+||.+..+.. +..|
T Consensus 73 ~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~l~~~~~~~-----~~~L 136 (490)
T PRK10938 73 EQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE-----------VKDPARCEQLAQQFGITALLDRR-----FKYL 136 (490)
T ss_pred HHHHHHhceeccCcchhhcccchhhccccHHHhcccc-----------hhHHHHHHHHHHHcCCHhhhhCC-----cccC
Confidence 234669999998643 1 1 46888887532 12245678899999998766654 4689
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEE
Q 006571 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (640)
Q Consensus 297 SGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (640)
||||||||+||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++. .+.+.||+|++|++|++++
T Consensus 137 SgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~-~~~~~~d~v~~l~~G~i~~ 215 (490)
T PRK10938 137 STGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFD-EIPDFVQFAGVLADCTLAE 215 (490)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHhhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999999877999999999975 4778899999999999999
Q ss_pred ecChHHHH
Q 006571 377 FGKASEAM 384 (640)
Q Consensus 377 ~G~~~~~~ 384 (640)
.|+++++.
T Consensus 216 ~~~~~~~~ 223 (490)
T PRK10938 216 TGEREEIL 223 (490)
T ss_pred eCCHHHHh
Confidence 99988764
No 296
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=1.4e-39 Score=339.10 Aligned_cols=230 Identities=26% Similarity=0.486 Sum_probs=201.1
Q ss_pred CCeeEEEEeEEEEEeecccc-c--cccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEe
Q 006571 146 LPIYLKFTDVTYKVILKGMT-S--SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP 222 (640)
Q Consensus 146 ~~~~l~~~~vs~~~~~~~~~-~--~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~ 222 (640)
.++.++.+||...|+.++.- + .....++++||+++++||.++|||.||||||||-.+|.+.+ +.+|+|.|+|++
T Consensus 273 ~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~---~s~G~I~F~G~~ 349 (534)
T COG4172 273 APVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLI---PSQGEIRFDGQD 349 (534)
T ss_pred CCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhc---CcCceEEECCcc
Confidence 45679999999999876421 1 12356999999999999999999999999999999999644 236999999999
Q ss_pred CCh-------hccCcEEEEccCC--CCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccC
Q 006571 223 YSK-------SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFV 293 (640)
Q Consensus 223 ~~~-------~~~~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~ 293 (640)
+.. .+|+++-.||||| .|-|.+||.+-|.-+.....| ..+++++++++.+.++++||+... -++++
T Consensus 350 i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~-~ls~~eR~~rv~~aL~EVGLDp~~----r~RYP 424 (534)
T COG4172 350 IDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEP-KLSAAERDQRVIEALEEVGLDPAT----RNRYP 424 (534)
T ss_pred ccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCC-CCCHHHHHHHHHHHHHHcCCChhH----hhcCC
Confidence 852 3688999999998 589999999999998876544 578899999999999999997522 24688
Q ss_pred CcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCcHHHhccCEEEEEcCC
Q 006571 294 RGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKG 372 (640)
Q Consensus 294 ~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~tH~~~~~i~~~~D~i~vL~~G 372 (640)
+++|||||||++||||++.+|++++||||||+||-.-+.+|+++|++|.+ .|.+-++++||+. .+..+||+|+||.+|
T Consensus 425 hEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~-VvrAl~~~viVm~~G 503 (534)
T COG4172 425 HEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLA-VVRALCHRVIVMRDG 503 (534)
T ss_pred cccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHHhhceEEEEeCC
Confidence 99999999999999999999999999999999999999999999999975 4899999999975 477899999999999
Q ss_pred eEEEecChHHHH
Q 006571 373 SLLYFGKASEAM 384 (640)
Q Consensus 373 ~iv~~G~~~~~~ 384 (640)
+||+.|+.++++
T Consensus 504 kiVE~G~~~~if 515 (534)
T COG4172 504 KIVEQGPTEAVF 515 (534)
T ss_pred EEeeeCCHHHHh
Confidence 999999999885
No 297
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.3e-39 Score=324.95 Aligned_cols=198 Identities=26% Similarity=0.415 Sum_probs=167.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh-hc
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-SL 227 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-~~ 227 (640)
.|+++||++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. ..
T Consensus 2 ~l~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~ 71 (207)
T PRK13539 2 MLEGEDLACVR--------GGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP--PAAGTIKLDGGDIDDPDV 71 (207)
T ss_pred EEEEEeEEEEE--------CCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEeCcchhh
Confidence 48999999998 34569999999999999999999999999999999999543 468999999988642 25
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHH
Q 006571 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (640)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (640)
++.++|++|++.+++.+||+||+.+..... . . ..+++.++++.+||.+..+. .++.||||||||++||
T Consensus 72 ~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~-~--~----~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrl~la 139 (207)
T PRK13539 72 AEACHYLGHRNAMKPALTVAENLEFWAAFL-G--G----EELDIAAALEAVGLAPLAHL-----PFGYLSAGQKRRVALA 139 (207)
T ss_pred HhhcEEecCCCcCCCCCcHHHHHHHHHHhc-C--C----cHHHHHHHHHHcCCHHHHcC-----ChhhcCHHHHHHHHHH
Confidence 678999999998888899999998765332 1 1 12347889999999765554 3468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcC
Q 006571 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (640)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~ 371 (640)
|+|+.+|++|||||||+|||+.+...+.+.|++++++|+|||++||++.. +. . |+++-+..
T Consensus 140 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~-~~-~-~~~~~~~~ 200 (207)
T PRK13539 140 RLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLG-LP-G-ARELDLGP 200 (207)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchh-hc-c-CcEEeecC
Confidence 99999999999999999999999999999999988789999999999753 43 3 88887744
No 298
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.3e-39 Score=324.49 Aligned_cols=198 Identities=21% Similarity=0.395 Sum_probs=164.1
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++|++++|.. ..+.+|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 6 ~l~~~~l~~~~~~------~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~ 77 (207)
T cd03369 6 EIEVENLSVRYAP------DLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLE--AEEGKIEIDGIDISTIPL 77 (207)
T ss_pred eEEEEEEEEEeCC------CCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCeEEECCEEhHHCCH
Confidence 5899999999821 12479999999999999999999999999999999999643 568999999998642
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHH
Q 006571 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (640)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (640)
..++.|+||+|++.+++ .||+||+.+.. .... +.+.+.++ + + ..+..||||||||+
T Consensus 78 ~~~~~~i~~v~q~~~~~~-~tv~~~l~~~~------~~~~----~~~~~~l~---~----~-----~~~~~LS~G~~qrv 134 (207)
T cd03369 78 EDLRSSLTIIPQDPTLFS-GTIRSNLDPFD------EYSD----EEIYGALR---V----S-----EGGLNLSQGQRQLL 134 (207)
T ss_pred HHHHhhEEEEecCCcccC-ccHHHHhcccC------CCCH----HHHHHHhh---c----c-----CCCCcCCHHHHHHH
Confidence 34678999999998887 49999997531 1111 12333333 2 1 23578999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecCh
Q 006571 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (640)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (640)
+|||+|+.+|++|||||||+|||+.++..+.+.|+++. +|+|+|++||++.. +. .||++++|++|+++..|++
T Consensus 135 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~~-~~-~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 135 CLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTILTIAHRLRT-II-DYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred HHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHH-Hh-hCCEEEEEECCEEEecCCC
Confidence 99999999999999999999999999999999999985 48999999999764 44 4999999999999988863
No 299
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=1e-39 Score=319.25 Aligned_cols=171 Identities=27% Similarity=0.518 Sum_probs=153.3
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++|++++| +|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 4 ~l~~~~l~~~~------------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~ 69 (182)
T cd03215 4 VLEVRGLSVKG------------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP--PASGEITLDGKPVTRRSP 69 (182)
T ss_pred EEEEeccEEEe------------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCccCH
Confidence 58999999874 8999999999999999999999999999999999653 568999999998742
Q ss_pred --hccCcEEEEccCC---CCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHH
Q 006571 226 --SLKSKIGFVTQDD---VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (640)
Q Consensus 226 --~~~~~i~yV~Q~~---~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 300 (640)
..++.++|++|++ .+++.+|++||+.+... |||||
T Consensus 70 ~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~----------------------------------------LS~G~ 109 (182)
T cd03215 70 RDAIRAGIAYVPEDRKREGLVLDLSVAENIALSSL----------------------------------------LSGGN 109 (182)
T ss_pred HHHHhCCeEEecCCcccCcccCCCcHHHHHHHHhh----------------------------------------cCHHH
Confidence 2467899999985 57888999999986420 99999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeE
Q 006571 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (640)
Q Consensus 301 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~i 374 (640)
|||++|||||+.+|++|||||||+|||+.++..+.+.|+++.++|+|+|+++|++. ++.++||++++|++|++
T Consensus 110 ~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 110 QQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELD-ELLGLCDRILVMYEGRI 182 (182)
T ss_pred HHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999999999999999999877899999999965 57788999999999974
No 300
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=8.6e-40 Score=367.20 Aligned_cols=221 Identities=21% Similarity=0.373 Sum_probs=183.0
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++|++++|.. .+++.+|+|+||+|++||+++|+||||||||||+|+|+|.+. |+.+|+|.++|+++..
T Consensus 257 ~l~~~~l~~~~~~-----~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~-p~~~G~i~~~g~~~~~~~~ 330 (500)
T TIGR02633 257 ILEARNLTCWDVI-----NPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYP-GKFEGNVFINGKPVDIRNP 330 (500)
T ss_pred eEEEeCCcccccc-----cccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCC-CCCCeEEEECCEECCCCCH
Confidence 6999999987621 123569999999999999999999999999999999999653 3358999999998742
Q ss_pred --hccCcEEEEccCC---CCCCCCCHHHHHHHHHhccCC--CCccHHHHHHHHHHHHHHcCCCc-cccccccCccCCcCC
Q 006571 226 --SLKSKIGFVTQDD---VLFPHLTVKETLTYAALLRLP--NTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVS 297 (640)
Q Consensus 226 --~~~~~i~yV~Q~~---~l~~~lTV~Enl~~~~~~~~~--~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~LS 297 (640)
..+++++||+|++ .+++.+||+||+.++...... ........++++.++++.++|.+ ..++. +..||
T Consensus 331 ~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS 405 (500)
T TIGR02633 331 AQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLP-----IGRLS 405 (500)
T ss_pred HHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCc-----cccCC
Confidence 3467899999995 588899999999876421110 01223344567889999999963 44543 46899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEe
Q 006571 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (640)
Q Consensus 298 GGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (640)
|||||||+|||+|+.+|++|||||||+|||+.++..+++.|++++++|.|||++|||+. .+.++||++++|++|+++..
T Consensus 406 gGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~v~~l~~G~i~~~ 484 (500)
T TIGR02633 406 GGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELA-EVLGLSDRVLVIGEGKLKGD 484 (500)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999999888999999999975 57789999999999999987
Q ss_pred cChH
Q 006571 378 GKAS 381 (640)
Q Consensus 378 G~~~ 381 (640)
++.+
T Consensus 485 ~~~~ 488 (500)
T TIGR02633 485 FVNH 488 (500)
T ss_pred Eccc
Confidence 7654
No 301
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=9.8e-41 Score=379.25 Aligned_cols=210 Identities=20% Similarity=0.258 Sum_probs=169.9
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (640)
..|+++||+|+|+.+. ..++++|+|+|+++++||++||+||||||||||+++|+|. ++ +.+|+|.+||.++.+
T Consensus 336 ~~i~~~~v~f~y~~~~---~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~-~~-p~~G~i~~~g~~i~~~~ 410 (555)
T TIGR01194 336 DSIELKDVHMNPKAPE---GSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGL-YI-PQEGEILLDGAAVSADS 410 (555)
T ss_pred ceEEEEEEEEEeCCCC---CCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCC-CC-CCCcEEEECCEECCCCC
Confidence 4699999999994210 0124699999999999999999999999999999999985 43 468999999999863
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccc-cCccCCcCCHHHHH
Q 006571 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMI-GGSFVRGVSGGERK 302 (640)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~v-g~~~~~~LSGGqrq 302 (640)
.+++.++||+|++.+|++ |+++|+. + ...++++.++++.+++.+..+... |-.....|||||||
T Consensus 411 ~~~~~~~i~~v~q~~~lf~~-ti~~n~~-------~-----~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~q 477 (555)
T TIGR01194 411 RDDYRDLFSAIFADFHLFDD-LIGPDEG-------E-----HASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQK 477 (555)
T ss_pred HHHHHhhCcEEccChhhhhh-hhhcccc-------c-----chhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHH
Confidence 567889999999999975 8998841 1 122345677888888765433221 11113579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH-HHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEe
Q 006571 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ-DIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (640)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~-~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (640)
|++|||||+++|+||||||||++||+.++..+.+.+. .+...|+|+|+++|+++ ..+.||+|++|++|++++.
T Consensus 478 RlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~--~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 478 RLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQ--YFELADQIIKLAAGCIVKD 551 (555)
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH--HHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999998664 45556899999999975 3578999999999999764
No 302
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=2.6e-39 Score=318.18 Aligned_cols=177 Identities=32% Similarity=0.572 Sum_probs=151.3
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh------hccCcEEEEccCC--CC
Q 006571 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK------SLKSKIGFVTQDD--VL 240 (640)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~------~~~~~i~yV~Q~~--~l 240 (640)
++.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. .+++.++|++|++ .+
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 81 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLR--PQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQL 81 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceeEEECCEEccccccchHHHHhhEEEEecChhhcc
Confidence 4579999999999999999999999999999999999653 468999999998731 3456799999997 35
Q ss_pred CCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEe
Q 006571 241 FPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLD 320 (640)
Q Consensus 241 ~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLD 320 (640)
+ ..||+||+.+..... ..+..+..++++++++.+||.+..++. +..||||||||++|||||+.+|++||||
T Consensus 82 ~-~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllD 152 (190)
T TIGR01166 82 F-AADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERP-----THCLSGGEKKRVAIAGAVAMRPDVLLLD 152 (190)
T ss_pred c-cccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 5 469999999875432 123444556788999999998766653 4689999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCC
Q 006571 321 EPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 356 (640)
Q Consensus 321 EPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~ 356 (640)
|||+|||+.++..+.+.|++++++|+|||++||++.
T Consensus 153 EPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 153 EPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 999999999999999999999877999999999964
No 303
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=7.6e-39 Score=352.62 Aligned_cols=214 Identities=25% Similarity=0.349 Sum_probs=179.1
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhcc
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~ 228 (640)
+++++||++.|.. ...+++|+|+||+|++|++++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 21 mL~lknL~~~~~~-----~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~--P~sGeI~I~G~~~----- 88 (549)
T PRK13545 21 FDKLKDLFFRSKD-----GEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTM--PNKGTVDIKGSAA----- 88 (549)
T ss_pred eeEEEEEEEecCC-----CccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCceEEEECCEee-----
Confidence 6889999888721 123579999999999999999999999999999999999653 5689999999752
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHH
Q 006571 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN 308 (640)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~ 308 (640)
++.+.+.+++.+||+||+.+..... ..+.++..+++.++++.++|.+..+.. ++.||||||||++|||
T Consensus 89 ----~i~~~~~l~~~lTV~EnL~l~~~~~---~~~~~e~~e~i~elLe~lgL~~~ld~~-----~~~LSGGQrQRVaLAr 156 (549)
T PRK13545 89 ----LIAISSGLNGQLTGIENIELKGLMM---GLTKEKIKEIIPEIIEFADIGKFIYQP-----VKTYSSGMKSRLGFAI 156 (549)
T ss_pred ----eEEeccccCCCCcHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHcCChhHhhCC-----cccCCHHHHHHHHHHH
Confidence 2223445677789999998854322 123444556678899999998766654 4689999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHHHH
Q 006571 309 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYF 387 (640)
Q Consensus 309 aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~~f 387 (640)
||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++. .+.++||++++|++|++++.|+++++..-|
T Consensus 157 AL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~-~i~~l~DrIivL~~GkIv~~G~~~el~~~~ 234 (549)
T PRK13545 157 SVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLS-QVKSFCTKALWLHYGQVKEYGDIKEVVDHY 234 (549)
T ss_pred HHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEECCHHHHHhhH
Confidence 999999999999999999999999999999999877999999999975 577889999999999999999998886544
No 304
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=4.4e-39 Score=361.57 Aligned_cols=214 Identities=23% Similarity=0.416 Sum_probs=179.5
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.++++|+++ .+|+|+||+|++||+++|+||||||||||+|+|+|... +.+|+|.++|+++..
T Consensus 257 ~l~~~~l~~-------------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~--p~~G~I~~~g~~i~~~~~ 321 (501)
T PRK10762 257 RLKVDNLSG-------------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALP--RTSGYVTLDGHEVVTRSP 321 (501)
T ss_pred EEEEeCccc-------------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCCCCH
Confidence 588888863 27999999999999999999999999999999999653 468999999988742
Q ss_pred --hccCcEEEEccCC---CCCCCCCHHHHHHHHHhccCC---CCccHHHHHHHHHHHHHHcCCC-ccccccccCccCCcC
Q 006571 226 --SLKSKIGFVTQDD---VLFPHLTVKETLTYAALLRLP---NTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGV 296 (640)
Q Consensus 226 --~~~~~i~yV~Q~~---~l~~~lTV~Enl~~~~~~~~~---~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~L 296 (640)
..++.+|||+|++ .+++.+||.||+.++...... ......+.+++++++++.++|. +..++. +..|
T Consensus 322 ~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~L 396 (501)
T PRK10762 322 QDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQA-----IGLL 396 (501)
T ss_pred HHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCc-----hhhC
Confidence 2456799999996 578889999999875321100 0122334456788999999995 455543 4689
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEE
Q 006571 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (640)
Q Consensus 297 SGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (640)
||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||+|++|++|+++.
T Consensus 397 SgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~-~~~~~~d~v~~l~~G~i~~ 475 (501)
T PRK10762 397 SGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMP-EVLGMSDRILVMHEGRISG 475 (501)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999999878999999999975 5778999999999999999
Q ss_pred ecChHHH
Q 006571 377 FGKASEA 383 (640)
Q Consensus 377 ~G~~~~~ 383 (640)
.|+++++
T Consensus 476 ~~~~~~~ 482 (501)
T PRK10762 476 EFTREQA 482 (501)
T ss_pred EeccccC
Confidence 9987764
No 305
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=4.4e-39 Score=324.80 Aligned_cols=197 Identities=28% Similarity=0.432 Sum_probs=163.8
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCC--CCCHHHHHHHHHh
Q 006571 178 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFP--HLTVKETLTYAAL 255 (640)
Q Consensus 178 ~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~--~lTV~Enl~~~~~ 255 (640)
|+|++||+++|+||||||||||+++|+|... +.+|+|.+||+++.. .+++++|++|++.+++ .+|+.||+.++..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~-~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~ 77 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIP--PAKGTVKVAGASPGK-GWRHIGYVPQRHEFAWDFPISVAHTVMSGRT 77 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCccchH-hhCcEEEecccccccCCCCccHHHHHHhccc
Confidence 5789999999999999999999999999653 468999999998643 4577999999987642 4799999987532
Q ss_pred ccCC-CCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 006571 256 LRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRI 334 (640)
Q Consensus 256 ~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i 334 (640)
.... .........+++.++++.+++.+..++. +.+||||||||++|||+|+.+|++|||||||+|||+.++..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l 152 (223)
T TIGR03771 78 GHIGWLRRPCVADFAAVRDALRRVGLTELADRP-----VGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELL 152 (223)
T ss_pred cccccccCCcHHHHHHHHHHHHHhCCchhhcCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 1100 0011223345688899999998766554 468999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHH
Q 006571 335 VQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (640)
Q Consensus 335 ~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (640)
.+.|++++++|+|||++||++. ++.+.||+++++ +|++++.|+++++.
T Consensus 153 ~~~l~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l-~G~i~~~~~~~~~~ 200 (223)
T TIGR03771 153 TELFIELAGAGTAILMTTHDLA-QAMATCDRVVLL-NGRVIADGTPQQLQ 200 (223)
T ss_pred HHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE-CCEEEeecCHHHhc
Confidence 9999999877999999999975 477899999999 89999999988764
No 306
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=2.1e-39 Score=316.44 Aligned_cols=175 Identities=33% Similarity=0.584 Sum_probs=150.2
Q ss_pred EEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----h
Q 006571 151 KFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----S 226 (640)
Q Consensus 151 ~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~ 226 (640)
+++||+++| +++.+|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. .
T Consensus 1 ~~~~l~~~~--------~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~--~~~G~v~~~g~~~~~~~~~~ 70 (180)
T cd03214 1 EVENLSVGY--------GGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLK--PSSGEILLDGKDLASLSPKE 70 (180)
T ss_pred CeeEEEEEE--------CCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCcCCHHH
Confidence 478999988 23569999999999999999999999999999999999643 568999999998742 2
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHH
Q 006571 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (640)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (640)
+++.++|++| +++.+||.+..++ .+..||||||||++|
T Consensus 71 ~~~~i~~~~q-------------------------------------~l~~~gl~~~~~~-----~~~~LS~G~~qrl~l 108 (180)
T cd03214 71 LARKIAYVPQ-------------------------------------ALELLGLAHLADR-----PFNELSGGERQRVLL 108 (180)
T ss_pred HHHHHhHHHH-------------------------------------HHHHcCCHhHhcC-----CcccCCHHHHHHHHH
Confidence 3456888888 4555666654443 346899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEec
Q 006571 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (640)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (640)
||+|+.+|+++||||||+|||+.++..+.+.|++++++ ++|+|+++|++. .+.++||++++|++|++++.|
T Consensus 109 aral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 109 ARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLN-LAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999999776 899999999976 466889999999999998754
No 307
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-39 Score=362.08 Aligned_cols=215 Identities=20% Similarity=0.371 Sum_probs=179.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.++++|+++. .+++|+||+|++||+++|+||||||||||+|+|+|... +.+|+|.++|+++..
T Consensus 257 ~l~~~~~~~~------------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~--p~~G~i~~~g~~~~~~~~ 322 (501)
T PRK11288 257 RLRLDGLKGP------------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATR--RTAGQVYLDGKPIDIRSP 322 (501)
T ss_pred EEEEeccccC------------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCc--CCCceEEECCEECCCCCH
Confidence 5888888731 48999999999999999999999999999999999653 568999999998642
Q ss_pred --hccCcEEEEccCC---CCCCCCCHHHHHHHHHhccC-CCC--ccHHHHHHHHHHHHHHcCCC-ccccccccCccCCcC
Q 006571 226 --SLKSKIGFVTQDD---VLFPHLTVKETLTYAALLRL-PNT--LTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGV 296 (640)
Q Consensus 226 --~~~~~i~yV~Q~~---~l~~~lTV~Enl~~~~~~~~-~~~--~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~L 296 (640)
..++.++|++|++ .+++.+||.||+.++..... +.. ......++.++++++.++|. +..++. +..|
T Consensus 323 ~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~L 397 (501)
T PRK11288 323 RDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQL-----IMNL 397 (501)
T ss_pred HHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCc-----cccC
Confidence 2356799999996 48888999999987532110 001 12233345688899999994 556654 4689
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEE
Q 006571 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (640)
Q Consensus 297 SGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (640)
||||||||+|||+|+.+|++|||||||+|||+.++..+++.|++++++|.|||++|||+. .+.++||++++|++|++++
T Consensus 398 SgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~i~~l~~g~i~~ 476 (501)
T PRK11288 398 SGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLP-EVLGVADRIVVMREGRIAG 476 (501)
T ss_pred CHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHhhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999999888999999999965 5778999999999999999
Q ss_pred ecChHHH
Q 006571 377 FGKASEA 383 (640)
Q Consensus 377 ~G~~~~~ 383 (640)
.|+++++
T Consensus 477 ~~~~~~~ 483 (501)
T PRK11288 477 ELAREQA 483 (501)
T ss_pred EEccccC
Confidence 9987653
No 308
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=6.8e-39 Score=318.66 Aligned_cols=194 Identities=27% Similarity=0.439 Sum_probs=152.7
Q ss_pred EEEEeEEEEEeeccccccc--cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhc
Q 006571 150 LKFTDVTYKVILKGMTSSE--EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~--~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (640)
|+++||+++|.. .. .+.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|
T Consensus 1 l~~~~l~~~~~~-----~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~--~~~G~i~~~g------- 66 (204)
T cd03250 1 ISVEDASFTWDS-----GEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELE--KLSGSVSVPG------- 66 (204)
T ss_pred CEEeEEEEecCC-----CCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCC--CCCCeEEEcC-------
Confidence 478999999821 11 1369999999999999999999999999999999999543 5689999998
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCc-------cccccccCccCCcCCHHH
Q 006571 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-------CQDTMIGGSFVRGVSGGE 300 (640)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~t~vg~~~~~~LSGGq 300 (640)
+|+|++|++.+++ .|++||+.+... ...+. ..+.++.+++.+ ..++.+. ..+..|||||
T Consensus 67 --~i~~~~q~~~l~~-~t~~enl~~~~~------~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~lS~G~ 132 (204)
T cd03250 67 --SIAYVSQEPWIQN-GTIRENILFGKP------FDEER----YEKVIKACALEPDLEILPDGDLTEIG-EKGINLSGGQ 132 (204)
T ss_pred --EEEEEecCchhcc-CcHHHHhccCCC------cCHHH----HHHHHHHcCcHHHHHhccCcccceec-CCCCcCCHHH
Confidence 5999999999985 699999987532 11111 122222222211 2223332 3457899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCe
Q 006571 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ-MLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (640)
Q Consensus 301 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~-~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~ 373 (640)
|||++|||+|+.+|++++|||||+|||+.++..+.+ +++++.++|+|||+++|++.. +.. ||++++|++|+
T Consensus 133 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~-~~~-~d~i~~l~~G~ 204 (204)
T cd03250 133 KQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQL-LPH-ADQIVVLDNGR 204 (204)
T ss_pred HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHH-Hhh-CCEEEEEeCCC
Confidence 999999999999999999999999999999999998 466666668999999999753 444 99999999985
No 309
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=1.1e-38 Score=341.83 Aligned_cols=215 Identities=27% Similarity=0.392 Sum_probs=191.5
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC----
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~---- 224 (640)
.++++++++.| +...+++||||+|++||+.||+|.||||||||+++|.|. +. |++|+|.+||+++.
T Consensus 4 ~l~~~~itK~f--------~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~-~~-P~~GeI~v~G~~v~~~sP 73 (501)
T COG3845 4 ALEMRGITKRF--------PGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGL-YQ-PDSGEIRVDGKEVRIKSP 73 (501)
T ss_pred eEEEeccEEEc--------CCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCc-cc-CCcceEEECCEEeccCCH
Confidence 58999999998 467899999999999999999999999999999999995 44 46999999999874
Q ss_pred -hhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHH
Q 006571 225 -KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (640)
Q Consensus 225 -~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (640)
+..+..||+|+|++.|+|++||.|||.++.........+....+++++++.+.+||+-..|..+ ..||-|||||
T Consensus 74 ~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V-----~dLsVG~qQR 148 (501)
T COG3845 74 RDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKV-----ADLSVGEQQR 148 (501)
T ss_pred HHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCcccee-----ecCCcchhHH
Confidence 2457789999999999999999999999865322223566778888999999999986666554 6899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecC
Q 006571 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (640)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (640)
|.|-++|.++|++|||||||+-|-|....++++.|++++++|+|||++||.+. ++.+.|||+.||.+|+++..-+
T Consensus 149 VEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~-Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 149 VEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLK-EVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhhCeeEEEeCCeEEeeec
Confidence 99999999999999999999999999999999999999999999999999975 6889999999999999876655
No 310
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=8.4e-39 Score=362.94 Aligned_cols=203 Identities=23% Similarity=0.311 Sum_probs=170.4
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (640)
..|+++||+|+|+ +++++|+|+|++|++||.+||+||||||||||+++|+|. ++ +.+|+|.+||.++.+
T Consensus 321 ~~i~~~~v~f~y~-------~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~-~~-~~~G~i~~~g~~~~~~~ 391 (547)
T PRK10522 321 QTLELRNVTFAYQ-------DNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGL-YQ-PQSGEILLDGKPVTAEQ 391 (547)
T ss_pred ceEEEEEEEEEeC-------CCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CC-CCCeEEEECCEECCCCC
Confidence 3699999999993 234699999999999999999999999999999999985 43 468999999999863
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCc--cCCcCCHHHH
Q 006571 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGS--FVRGVSGGER 301 (640)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~--~~~~LSGGqr 301 (640)
.++++++||+|++.+|+. |++|| + + . ..++.++++++.+++.+..+. ++. ....||||||
T Consensus 392 ~~~~~~~i~~v~q~~~lf~~-ti~~n---~-----~-~----~~~~~~~~~~~~~~l~~~~~~--~~~~~~G~~LSgGq~ 455 (547)
T PRK10522 392 PEDYRKLFSAVFTDFHLFDQ-LLGPE---G-----K-P----ANPALVEKWLERLKMAHKLEL--EDGRISNLKLSKGQK 455 (547)
T ss_pred HHHHhhheEEEecChhHHHH-hhccc---c-----C-c----hHHHHHHHHHHHcCCchhhhc--cccCCCCCCCCHHHH
Confidence 568899999999999975 88887 1 0 1 223457788888888754332 221 1357999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEe
Q 006571 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (640)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (640)
||++|||||+++|++|+||||||+||+.++..+.+.|.+..+ .++|+|+++|+++ ..+.||+|++|++|++++.
T Consensus 456 qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~--~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 456 KRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDH--YFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechH--HHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999999987653 5899999999975 4678999999999999876
No 311
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-39 Score=325.25 Aligned_cols=195 Identities=30% Similarity=0.497 Sum_probs=172.7
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--------hccCcEEEEccCCCCCCCCC
Q 006571 174 NGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--------SLKSKIGFVTQDDVLFPHLT 245 (640)
Q Consensus 174 ~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--------~~~~~i~yV~Q~~~l~~~lT 245 (640)
=+++|..+.-.++||-|+||||||||+|+|+|... ++.|.|.+||+.+.+ ..+|+|||||||-.|||++|
T Consensus 15 l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~r--PdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~t 92 (352)
T COG4148 15 LDANFTLPARGITALFGPSGSGKTSLINMIAGLTR--PDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYT 92 (352)
T ss_pred EEEeccCCCCceEEEecCCCCChhhHHHHHhccCC--ccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceE
Confidence 35788887767999999999999999999999664 468999999987632 24789999999999999999
Q ss_pred HHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 006571 246 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 325 (640)
Q Consensus 246 V~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsg 325 (640)
|+.||.|+.... ..+..+++++.+|+++..+. ++..|||||||||+|+|||++.|++|+||||.++
T Consensus 93 VrgNL~YG~~~~---------~~~~fd~iv~lLGI~hLL~R-----~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaS 158 (352)
T COG4148 93 VRGNLRYGMWKS---------MRAQFDQLVALLGIEHLLDR-----YPGTLSGGEKQRVAIGRALLTAPELLLMDEPLAS 158 (352)
T ss_pred Eecchhhhhccc---------chHhHHHHHHHhCcHHHHhh-----CCCccCcchhhHHHHHHHHhcCCCeeeecCchhh
Confidence 999999986421 34457788999999998875 5678999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHH
Q 006571 326 LDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (640)
Q Consensus 326 LD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (640)
||-.-..+++-.|.++.++ ...|+.+||.+ .++.+++|+|++|++|++...|+.+++..
T Consensus 159 LD~~RK~EilpylERL~~e~~IPIlYVSHS~-~Ev~RLAd~vV~le~GkV~A~g~~e~v~~ 218 (352)
T COG4148 159 LDLPRKREILPYLERLRDEINIPILYVSHSL-DEVLRLADRVVVLENGKVKASGPLEEVWG 218 (352)
T ss_pred cccchhhHHHHHHHHHHHhcCCCEEEEecCH-HHHHhhhheEEEecCCeEEecCcHHHHhc
Confidence 9999999999999999876 78999999996 46899999999999999999999999863
No 312
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=1.4e-38 Score=358.22 Aligned_cols=214 Identities=22% Similarity=0.310 Sum_probs=177.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++|++. .+|+||||+|++|++++|+||||||||||+|+|+|.+. +.+|+|.++|+++..
T Consensus 268 ~l~~~~l~~-------------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~~~~~ 332 (510)
T PRK15439 268 VLTVEDLTG-------------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRP--ARGGRIMLNGKEINALST 332 (510)
T ss_pred eEEEeCCCC-------------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCcEEEECCEECCCCCH
Confidence 688888872 15999999999999999999999999999999999653 468999999998742
Q ss_pred --hccCcEEEEccCC---CCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCccCCcCCHH
Q 006571 226 --SLKSKIGFVTQDD---VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGG 299 (640)
Q Consensus 226 --~~~~~i~yV~Q~~---~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LSGG 299 (640)
..++.|+||+|++ .+++.+|+.||+........+........++.++++++.+||+ +..++. +..||||
T Consensus 333 ~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG 407 (510)
T PRK15439 333 AQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQA-----ARTLSGG 407 (510)
T ss_pred HHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCc-----cccCCcH
Confidence 1346799999984 4888899999996431111110011222345688999999996 556654 4689999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecC
Q 006571 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (640)
Q Consensus 300 qrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (640)
|||||+|||+|+.+|+||||||||+|||+.++..+.+.|++++++|.|||++||++. .+.++||++++|++|+++..|+
T Consensus 408 ~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~-~i~~~~d~i~~l~~G~i~~~~~ 486 (510)
T PRK15439 408 NQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLE-EIEQMADRVLVMHQGEISGALT 486 (510)
T ss_pred HHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEEc
Confidence 999999999999999999999999999999999999999999888999999999975 5778999999999999999998
Q ss_pred hHHH
Q 006571 380 ASEA 383 (640)
Q Consensus 380 ~~~~ 383 (640)
++++
T Consensus 487 ~~~~ 490 (510)
T PRK15439 487 GAAI 490 (510)
T ss_pred cccC
Confidence 7654
No 313
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=5.6e-40 Score=407.39 Aligned_cols=336 Identities=18% Similarity=0.183 Sum_probs=221.8
Q ss_pred HHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchhhhH
Q 006571 12 RTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGAAL 91 (640)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 91 (640)
++.++.-.+.++...|.+.+.++||.++.+....+++.+...+......+.....+.......... +-+.-++.|+.+
T Consensus 469 ~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~fg~~~ 546 (1495)
T PLN03232 469 KEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNSIP--VVVTLVSFGVFV 546 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 333455566777888999999999999998877766664332222222211110000000000000 011113455555
Q ss_pred hhhhhhhhhhhhccccC----CCCcc------------ccccCCCCCCCCCccccccccCCCCCCCCCCCCCeeEEEEeE
Q 006571 92 SRASSASLGLSFSFTGF----TMPPD------------EIADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDV 155 (640)
Q Consensus 92 ~~~~~~~~g~~~~~~~~----~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v 155 (640)
+..+..+.|.++++..+ ..|.. ..+..+.....+.++.... ... ........++++|+
T Consensus 547 v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~-----~~~-~~~~~~~~I~~~~v 620 (1495)
T PLN03232 547 LLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILA-----QNP-PLQPGAPAISIKNG 620 (1495)
T ss_pred HhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccc-----ccC-CcCCCCCcEEEEee
Confidence 55555566666655321 11111 1111111111111111000 000 00011235999999
Q ss_pred EEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEc
Q 006571 156 TYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVT 235 (640)
Q Consensus 156 s~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~ 235 (640)
+|+|+. ..++++|+|+|++|++||.++|+||||||||||+++|.|... +.+|.+. .+++.|+||+
T Consensus 621 sF~y~~-----~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~--~~~G~i~--------~~~~~Iayv~ 685 (1495)
T PLN03232 621 YFSWDS-----KTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELS--HAETSSV--------VIRGSVAYVP 685 (1495)
T ss_pred EEEcCC-----CCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCc--ccCCCEE--------EecCcEEEEc
Confidence 999842 124679999999999999999999999999999999998543 3466552 3567899999
Q ss_pred cCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHc-------CCCccccccccCccCCcCCHHHHHHHHHHH
Q 006571 236 QDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL-------GLERCQDTMIGGSFVRGVSGGERKRVCIGN 308 (640)
Q Consensus 236 Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~l-------gL~~~~~t~vg~~~~~~LSGGqrqRv~IA~ 308 (640)
|++.+|+. ||+|||.|+.. .++++ .+++++.. .|+++.+|.+|++. ..||||||||++|||
T Consensus 686 Q~p~Lf~g-TIreNI~fg~~------~~~e~----~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G-~~LSGGQkQRIaLAR 753 (1495)
T PLN03232 686 QVSWIFNA-TVRENILFGSD------FESER----YWRAIDVTALQHDLDLLPGRDLTEIGERG-VNISGGQKQRVSMAR 753 (1495)
T ss_pred Cccccccc-cHHHHhhcCCc------cCHHH----HHHHHHHhCCHHHHHhCCCCCCceecCCC-cccCHHHHHHHHHHH
Confidence 99999975 99999999731 22222 22222222 45778899999764 469999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHH
Q 006571 309 EIIINPSLLFLDEPTSGLDSTTALRIVQM-LQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (640)
Q Consensus 309 aL~~~P~iLlLDEPTsgLD~~s~~~i~~~-L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (640)
|++++|+|+|||||||+||+.++.++++. ++.+. +++|+|++||+++ ....||+|++|++|++++.|+++++.+
T Consensus 754 Aly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l-~~kT~IlvTH~~~--~l~~aD~Ii~L~~G~i~~~Gt~~eL~~ 828 (1495)
T PLN03232 754 AVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDEL-KGKTRVLVTNQLH--FLPLMDRIILVSEGMIKEEGTFAELSK 828 (1495)
T ss_pred HHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhh-cCCEEEEEECChh--hHHhCCEEEEEeCCEEEEecCHHHHHh
Confidence 99999999999999999999999988765 45443 5899999999986 357899999999999999999999864
No 314
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.8e-38 Score=312.33 Aligned_cols=191 Identities=21% Similarity=0.330 Sum_probs=159.7
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccC
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~ 229 (640)
|+++|++++| +++.+++ +||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++....++
T Consensus 2 l~~~~l~~~~--------~~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~~~~~ 70 (195)
T PRK13541 2 LSLHQLQFNI--------EQKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQ--PSSGNIYYKNCNINNIAKP 70 (195)
T ss_pred eEEEEeeEEE--------CCcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCcccChhhhh
Confidence 7899999998 2344555 999999999999999999999999999999643 5689999999987543345
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHH
Q 006571 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (640)
Q Consensus 230 ~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~a 309 (640)
.++|++|++.+++.+||+||+.+..... . ..+++.++++.+++.+..++. ++.||||||||++||||
T Consensus 71 ~~~~~~~~~~~~~~~tv~~~l~~~~~~~---~-----~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~~rl~la~a 137 (195)
T PRK13541 71 YCTYIGHNLGLKLEMTVFENLKFWSEIY---N-----SAETLYAAIHYFKLHDLLDEK-----CYSLSSGMQKIVAIARL 137 (195)
T ss_pred hEEeccCCcCCCccCCHHHHHHHHHHhc---c-----cHHHHHHHHHHcCCHhhhccC-----hhhCCHHHHHHHHHHHH
Confidence 6999999988878899999998864321 1 134567788999997665543 46899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEE
Q 006571 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKL 366 (640)
Q Consensus 310 L~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i 366 (640)
|+.+|++++|||||+|||+.++..+.+.|++..++|+|||+++|++.. ...+|-|
T Consensus 138 l~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~--i~~~~~~ 192 (195)
T PRK13541 138 IACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESS--IKSAQIL 192 (195)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccc--cchhhee
Confidence 999999999999999999999999999998777778999999999764 3556654
No 315
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-38 Score=308.27 Aligned_cols=167 Identities=37% Similarity=0.638 Sum_probs=147.2
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (640)
|+++|++++|.. ..+.+|+|+||+|++|++++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~------~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~ 72 (171)
T cd03228 1 IEFKNVSFSYPG------RPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYD--PTSGEILIDGVDLRDLDLE 72 (171)
T ss_pred CEEEEEEEEcCC------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCCEEEECCEEhhhcCHH
Confidence 468999998821 11369999999999999999999999999999999999653 468999999998742
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHH
Q 006571 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (640)
Q Consensus 226 ~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (640)
..++.++|++|++.+++ .|+.||+ ||||||||++
T Consensus 73 ~~~~~i~~~~~~~~~~~-~t~~e~l---------------------------------------------LS~G~~~rl~ 106 (171)
T cd03228 73 SLRKNIAYVPQDPFLFS-GTIRENI---------------------------------------------LSGGQRQRIA 106 (171)
T ss_pred HHHhhEEEEcCCchhcc-chHHHHh---------------------------------------------hCHHHHHHHH
Confidence 34677999999998886 5998887 9999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCe
Q 006571 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (640)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~ 373 (640)
|||+|+.+|++|||||||+|||+.++..+.+.|+++.+ ++|||++||++.. +.. ||++++|++|+
T Consensus 107 la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~~~-~d~~~~l~~g~ 171 (171)
T cd03228 107 IARALLRDPPILILDEATSALDPETEALILEALRALAK-GKTVIVIAHRLST-IRD-ADRIIVLDDGR 171 (171)
T ss_pred HHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcC-CCEEEEEecCHHH-HHh-CCEEEEEcCCC
Confidence 99999999999999999999999999999999999864 7999999999764 555 99999999985
No 316
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=2.2e-38 Score=318.16 Aligned_cols=200 Identities=26% Similarity=0.424 Sum_probs=158.4
Q ss_pred EEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh-----
Q 006571 151 KFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----- 225 (640)
Q Consensus 151 ~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----- 225 (640)
.+.|+.|.|+ +++++|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 2 ~~~~~~~~~~-------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~ 72 (218)
T cd03290 2 QVTNGYFSWG-------SGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ--TLEGKVHWSNKNESEPSFEA 72 (218)
T ss_pred eeeeeEEecC-------CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCCeEEECCcccccccccc
Confidence 4678888872 23579999999999999999999999999999999999653 468999999987632
Q ss_pred ---hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccc-------cccccCccCCc
Q 006571 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ-------DTMIGGSFVRG 295 (640)
Q Consensus 226 ---~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~t~vg~~~~~~ 295 (640)
..++.++|++|++.+++ .|++||+.+... ... +...++++.++|.+.. ++.+ +..+..
T Consensus 73 ~~~~~~~~i~~~~q~~~~~~-~t~~~nl~~~~~------~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~ 140 (218)
T cd03290 73 TRSRNRYSVAYAAQKPWLLN-ATVEENITFGSP------FNK----QRYKAVTDACSLQPDIDLLPFGDQTEI-GERGIN 140 (218)
T ss_pred cchhhcceEEEEcCCCcccc-ccHHHHHhhcCc------CCH----HHHHHHHHHhCcHHHHHhCcCccccCc-ccCCCc
Confidence 23467999999998884 699999987531 111 1123344445543321 2222 234678
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH--HHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCe
Q 006571 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ--MLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (640)
Q Consensus 296 LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~--~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~ 373 (640)
||||||||++|||+|+.+|++|||||||+|||+.++..+++ .++.+.+.|.|+|++||++.. + ..||++++|++|+
T Consensus 141 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~-~-~~~d~i~~l~~G~ 218 (218)
T cd03290 141 LSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQY-L-PHADWIIAMKDGS 218 (218)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHH-H-hhCCEEEEecCCC
Confidence 99999999999999999999999999999999999999998 667666668999999999764 4 5799999999884
No 317
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.9e-38 Score=306.95 Aligned_cols=231 Identities=29% Similarity=0.401 Sum_probs=198.9
Q ss_pred eEEEEeEEEEEeecccccccc-ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 006571 149 YLKFTDVTYKVILKGMTSSEE-KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~-~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (640)
+|+++||+.++ .+ +.||++||++|++||+.+||||||||||||.++|+|+-.-..++|+|.++|+++..
T Consensus 3 ~L~I~dLhv~v--------~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~ 74 (251)
T COG0396 3 MLEIKDLHVEV--------EGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELS 74 (251)
T ss_pred eeEEeeeEEEe--------cCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCC
Confidence 68999999987 34 58999999999999999999999999999999999964222468999999999852
Q ss_pred ---hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCc-cccccccCccCCcCCHHHH
Q 006571 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGER 301 (640)
Q Consensus 226 ---~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~LSGGqr 301 (640)
..|.-|...+|.|.=+|..|+.+.|..+...+....-...+..+.+++.++.+++++ ..+..+. .++|||||
T Consensus 75 ~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN----~GFSGGEk 150 (251)
T COG0396 75 PDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVN----EGFSGGEK 150 (251)
T ss_pred HhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccC----CCcCcchH
Confidence 356778999999999999999999998775533211113456677888999999976 4555443 58999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhcc--CEEEEEcCCeEEEecC
Q 006571 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKF--DKLILLGKGSLLYFGK 379 (640)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~--D~i~vL~~G~iv~~G~ 379 (640)
||..|+..++.+|++.+||||-||||..+-+.|-+.+..+.+.|.+++++||.. .+..+. |+|.||.+|+|+..|.
T Consensus 151 KR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~--rll~~i~pD~vhvl~~GrIv~sG~ 228 (251)
T COG0396 151 KRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQ--RLLDYIKPDKVHVLYDGRIVKSGD 228 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHhhcCCCEEEEEECCEEEecCC
Confidence 999999999999999999999999999999999999999999999999999984 466666 9999999999999999
Q ss_pred hHHHHHHHHhcCCCC
Q 006571 380 ASEAMAYFSSIGCSP 394 (640)
Q Consensus 380 ~~~~~~~f~~~g~~~ 394 (640)
+ ++..+++.-||.|
T Consensus 229 ~-el~~~le~~gy~~ 242 (251)
T COG0396 229 P-ELAEELEEKGYDW 242 (251)
T ss_pred H-HHHHHHHHhchHH
Confidence 9 9999999999865
No 318
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=2.5e-38 Score=336.69 Aligned_cols=187 Identities=31% Similarity=0.524 Sum_probs=163.0
Q ss_pred EECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHH
Q 006571 188 LMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQ 265 (640)
Q Consensus 188 IvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~ 265 (640)
|+||||||||||+++|+|... +.+|+|.++|+++.. ..++.++||+|++.+|+.+||+||+.|+...+ ..+..
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~--p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~ 75 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQ--PDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMR---KVPRA 75 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCC--CCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhc---CCCHH
Confidence 689999999999999999653 568999999998743 24678999999999999999999999986432 23344
Q ss_pred HHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-
Q 006571 266 QKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA- 344 (640)
Q Consensus 266 ~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~- 344 (640)
+.+++++++++.++|.+..++. +..|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.++
T Consensus 76 ~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~ 150 (325)
T TIGR01187 76 EIKPRVLEALRLVQLEEFADRK-----PHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQL 150 (325)
T ss_pred HHHHHHHHHHHHcCCcchhcCC-----hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhc
Confidence 5566788999999998766653 5789999999999999999999999999999999999999999999999765
Q ss_pred CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHH
Q 006571 345 GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (640)
Q Consensus 345 g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (640)
|+|||++||++. ++..+||+|++|++|+++..|+++++..
T Consensus 151 g~tiiivTHd~~-e~~~~~d~i~vl~~G~i~~~g~~~~~~~ 190 (325)
T TIGR01187 151 GITFVFVTHDQE-EAMTMSDRIAIMRKGKIAQIGTPEEIYE 190 (325)
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 899999999975 5778999999999999999999998753
No 319
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=3.6e-38 Score=303.17 Aligned_cols=157 Identities=31% Similarity=0.487 Sum_probs=141.5
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (640)
|+++||+++| +++++|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 1 l~~~~l~~~~--------~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~v~~~g~~~~~~~~~ 70 (163)
T cd03216 1 LELRGITKRF--------GGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYK--PDSGEILVDGKEVSFASPR 70 (163)
T ss_pred CEEEEEEEEE--------CCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEECCcCCHH
Confidence 4789999998 24579999999999999999999999999999999999653 568999999998742
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHH
Q 006571 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (640)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (640)
..++.++|++| ||||||||+
T Consensus 71 ~~~~~~i~~~~q-----------------------------------------------------------LS~G~~qrl 91 (163)
T cd03216 71 DARRAGIAMVYQ-----------------------------------------------------------LSVGERQMV 91 (163)
T ss_pred HHHhcCeEEEEe-----------------------------------------------------------cCHHHHHHH
Confidence 23567889888 999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEE
Q 006571 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (640)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (640)
+|||||+.+|++|||||||+|||+.++..+.+.|++++++|.|||+++|++. ++.+.||++++|++|++++
T Consensus 92 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 92 EIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD-EVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred HHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999999999999999999999877999999999965 4667899999999999875
No 320
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=7.3e-38 Score=326.46 Aligned_cols=205 Identities=29% Similarity=0.439 Sum_probs=163.6
Q ss_pred CCCeeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC
Q 006571 145 TLPIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS 224 (640)
Q Consensus 145 ~~~~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~ 224 (640)
.....|+++|+++. .+++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|
T Consensus 35 ~~~~~l~i~nls~~----------~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~--p~~G~I~i~g---- 98 (282)
T cd03291 35 SDDNNLFFSNLCLV----------GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELE--PSEGKIKHSG---- 98 (282)
T ss_pred CCCCeEEEEEEEEe----------cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECC----
Confidence 33456999999984 2469999999999999999999999999999999999653 5689999998
Q ss_pred hhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCC-------ccccccccCccCCcCC
Q 006571 225 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-------RCQDTMIGGSFVRGVS 297 (640)
Q Consensus 225 ~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~t~vg~~~~~~LS 297 (640)
.|+|++|++.+++. ||+||+.++... .. .++.+.++.+++. ...++.++ ..+..||
T Consensus 99 -----~i~yv~q~~~l~~~-tv~enl~~~~~~------~~----~~~~~~l~~~~l~~~l~~~~~~~~~~~~-~~~~~LS 161 (282)
T cd03291 99 -----RISFSSQFSWIMPG-TIKENIIFGVSY------DE----YRYKSVVKACQLEEDITKFPEKDNTVLG-EGGITLS 161 (282)
T ss_pred -----EEEEEeCccccccc-CHHHHhhccccc------CH----HHHHHHHHHhCCHHHHHhccccccceec-CCCCcCC
Confidence 39999999998875 999999875311 11 1112223333332 22233332 2356899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEE
Q 006571 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML-QDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (640)
Q Consensus 298 GGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L-~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (640)
||||||++|||+|+.+|++|||||||+|||+.++..+.+.+ +++. ++.|||+++|++.. + ..||++++|++|++++
T Consensus 162 gGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~~-~-~~~d~i~~l~~G~i~~ 238 (282)
T cd03291 162 GGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKMEH-L-KKADKILILHEGSSYF 238 (282)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCChHH-H-HhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999865 5554 47899999999764 4 6799999999999999
Q ss_pred ecChHHHHH
Q 006571 377 FGKASEAMA 385 (640)
Q Consensus 377 ~G~~~~~~~ 385 (640)
.|+++++..
T Consensus 239 ~g~~~~~~~ 247 (282)
T cd03291 239 YGTFSELQS 247 (282)
T ss_pred ECCHHHHHh
Confidence 999988753
No 321
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=7e-40 Score=306.28 Aligned_cols=204 Identities=28% Similarity=0.494 Sum_probs=175.0
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC----h
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----K 225 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~----~ 225 (640)
++++++.|.- .+.++|+++||++++||..+|.||||||||||+|+++. +. ++++|++++.|++++ +
T Consensus 4 le~kq~~y~a--------~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~-Li-sp~~G~l~f~Ge~vs~~~pe 73 (223)
T COG4619 4 LELKQVGYLA--------GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVAS-LI-SPTSGTLLFEGEDVSTLKPE 73 (223)
T ss_pred hHHHHHHhhc--------CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHh-cc-CCCCceEEEcCccccccChH
Confidence 4555665542 56789999999999999999999999999999999996 43 356899999999986 3
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHH
Q 006571 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (640)
Q Consensus 226 ~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (640)
.+|++|+||.|.+.||+. ||++|+.|....+..+. ..+++.++|+.++|++..- ++.+..||||||||++
T Consensus 74 a~Rq~VsY~~Q~paLfg~-tVeDNlifP~~~r~rr~-----dr~aa~~llar~~l~~~~L----~k~it~lSGGE~QriA 143 (223)
T COG4619 74 AYRQQVSYCAQTPALFGD-TVEDNLIFPWQIRNRRP-----DRAAALDLLARFALPDSIL----TKNITELSGGEKQRIA 143 (223)
T ss_pred HHHHHHHHHHcCcccccc-chhhccccchHHhccCC-----ChHHHHHHHHHcCCchhhh----cchhhhccchHHHHHH
Confidence 689999999999999986 99999999877653221 3456778999999976432 3456789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEeCCCCcHHHhccCEEEEEcCCeE
Q 006571 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (640)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~-~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~i 374 (640)
|+|.|..-|+||+||||||+||+.+++.|-++|.++. .+.+.++++||++.. ..+.||+++-+..|++
T Consensus 144 liR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dq-a~rha~k~itl~~G~~ 212 (223)
T COG4619 144 LIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQ-AIRHADKVITLQPGHA 212 (223)
T ss_pred HHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHH-HhhhhheEEEeccCcc
Confidence 9999999999999999999999999999999999986 568899999999764 5689999999999976
No 322
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=8e-38 Score=360.84 Aligned_cols=220 Identities=27% Similarity=0.470 Sum_probs=189.5
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++|++++|+.. .+.+++|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.+||+++..
T Consensus 4 ~l~~~nl~~~y~~~----~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~i~~~~~ 77 (648)
T PRK10535 4 LLELKDIRRSYPSG----EEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDK--PTSGTYRVAGQDVATLDA 77 (648)
T ss_pred EEEEeeEEEEeCCC----CCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEcCcCCH
Confidence 69999999998311 123579999999999999999999999999999999999653 568999999998753
Q ss_pred -h----ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHH
Q 006571 226 -S----LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (640)
Q Consensus 226 -~----~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 300 (640)
. .++.++|++|++.+|+.+|+.||+.+..... ....++.++++.++++.+||.+..|+. +..|||||
T Consensus 78 ~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~lgl~~~~~~~-----~~~LS~Gq 149 (648)
T PRK10535 78 DALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYA---GLERKQRLLRAQELLQRLGLEDRVEYQ-----PSQLSGGQ 149 (648)
T ss_pred HHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhcCC-----cccCCHHH
Confidence 1 1467999999999999999999999865322 223455667789999999998766654 46899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecCh
Q 006571 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (640)
Q Consensus 301 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (640)
|||++|||+|+.+|++|||||||+|||+.+++.+.+.|++++++|+|+|+++|++. ..+.||++++|++|++++.|++
T Consensus 150 ~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~--~~~~~d~i~~l~~G~i~~~g~~ 227 (648)
T PRK10535 150 QQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQ--VAAQAERVIEIRDGEIVRNPPA 227 (648)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHH--HHHhCCEEEEEECCEEEeecCc
Confidence 99999999999999999999999999999999999999999877999999999975 3467999999999999999999
Q ss_pred HHHH
Q 006571 381 SEAM 384 (640)
Q Consensus 381 ~~~~ 384 (640)
++..
T Consensus 228 ~~~~ 231 (648)
T PRK10535 228 QEKV 231 (648)
T ss_pred cccc
Confidence 8775
No 323
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-37 Score=352.86 Aligned_cols=212 Identities=26% Similarity=0.424 Sum_probs=174.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhcc
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~ 228 (640)
+|+++|++++| +++++|+|+||+|++||+++|+||||||||||||+|+|.+. +.+|+|.++|.
T Consensus 1 ml~i~~ls~~~--------~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~--p~~G~i~~~~~------- 63 (530)
T PRK15064 1 MLSTANITMQF--------GAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLE--PSAGNVSLDPN------- 63 (530)
T ss_pred CEEEEEEEEEe--------CCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEecCC-------
Confidence 37899999998 34579999999999999999999999999999999999653 46899999873
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhc------------cCCCC-c----------------cHHHHHHHHHHHHHHcC
Q 006571 229 SKIGFVTQDDVLFPHLTVKETLTYAALL------------RLPNT-L----------------TKQQKEKRAIDVINELG 279 (640)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~Enl~~~~~~------------~~~~~-~----------------~~~~~~~~v~~~l~~lg 279 (640)
..|+|++|++.+++.+||+||+.++... ..+.. . ...+.++++.++++.+|
T Consensus 64 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 143 (530)
T PRK15064 64 ERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVG 143 (530)
T ss_pred CEEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCC
Confidence 3599999999999999999999875310 00000 0 00122456788999999
Q ss_pred CCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHH
Q 006571 280 LERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRL 359 (640)
Q Consensus 280 L~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i 359 (640)
|.+..+. ..+..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++ .|.|||+++|++. .+
T Consensus 144 l~~~~~~----~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~~-~~ 215 (530)
T PRK15064 144 IPEEQHY----GLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIISHDRH-FL 215 (530)
T ss_pred CChhHhc----CchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEeCCHH-HH
Confidence 9753321 23468999999999999999999999999999999999999999999863 5899999999975 47
Q ss_pred HhccCEEEEEcCCeE-EEecChHHHHH
Q 006571 360 FHKFDKLILLGKGSL-LYFGKASEAMA 385 (640)
Q Consensus 360 ~~~~D~i~vL~~G~i-v~~G~~~~~~~ 385 (640)
.+.||+|++|++|++ ++.|++++..+
T Consensus 216 ~~~~d~i~~l~~g~i~~~~g~~~~~~~ 242 (530)
T PRK15064 216 NSVCTHMADLDYGELRVYPGNYDEYMT 242 (530)
T ss_pred HhhcceEEEEeCCEEEEecCCHHHHHH
Confidence 789999999999999 58999887653
No 324
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=6.4e-38 Score=302.35 Aligned_cols=163 Identities=29% Similarity=0.526 Sum_probs=143.5
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccC
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~ 229 (640)
|+++|++++|+ .++++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|. +
T Consensus 1 i~~~~~~~~~~-------~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~~~-------~ 64 (166)
T cd03223 1 IELENLSLATP-------DGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWP--WGSGRIGMPEG-------E 64 (166)
T ss_pred CEEEEEEEEcC-------CCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCC-------c
Confidence 46899999882 13569999999999999999999999999999999999653 56899999874 5
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHH
Q 006571 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (640)
Q Consensus 230 ~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~a 309 (640)
.++|++|++.++ ..||+||+.+. .+..||||||||++||||
T Consensus 65 ~i~~~~q~~~~~-~~tv~~nl~~~--------------------------------------~~~~LS~G~~~rv~lara 105 (166)
T cd03223 65 DLLFLPQRPYLP-LGTLREQLIYP--------------------------------------WDDVLSGGEQQRLAFARL 105 (166)
T ss_pred eEEEECCCCccc-cccHHHHhhcc--------------------------------------CCCCCCHHHHHHHHHHHH
Confidence 799999998876 57999999752 125799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCC
Q 006571 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKG 372 (640)
Q Consensus 310 L~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G 372 (640)
|+.+|++++|||||+|||+.++..+.+.|+++ ++|+|++||++. ....||++++|++|
T Consensus 106 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsh~~~--~~~~~d~i~~l~~~ 163 (166)
T cd03223 106 LLHKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRPS--LWKFHDRVLDLDGE 163 (166)
T ss_pred HHcCCCEEEEECCccccCHHHHHHHHHHHHHh---CCEEEEEeCChh--HHhhCCEEEEEcCC
Confidence 99999999999999999999999999999876 689999999975 34789999999876
No 325
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=2e-39 Score=403.13 Aligned_cols=206 Identities=24% Similarity=0.384 Sum_probs=171.5
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcc-cEEEECCEeCChhc
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG-GSITYNDHPYSKSL 227 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~-G~I~~~G~~~~~~~ 227 (640)
.|+++|++|+|+. ..++++|+|+|++|++|++++|+||||||||||+++|.|... +.+ |+|.+
T Consensus 614 ~I~~~nvsf~y~~-----~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~--~~~GG~I~l--------- 677 (1622)
T PLN03130 614 AISIKNGYFSWDS-----KAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELP--PRSDASVVI--------- 677 (1622)
T ss_pred ceEEEeeEEEccC-----CCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhc--cCCCceEEE---------
Confidence 5999999999842 124679999999999999999999999999999999999653 457 89974
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHc-------CCCccccccccCccCCcCCHHH
Q 006571 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL-------GLERCQDTMIGGSFVRGVSGGE 300 (640)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~l-------gL~~~~~t~vg~~~~~~LSGGq 300 (640)
+++|+||+|++.+|+. ||+|||.|+.. .+++ +.+++++.. .|+++.+|.+|.+. ..|||||
T Consensus 678 ~~~Iayv~Q~p~Lfng-TIreNI~fg~~------~d~e----~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G-~~LSGGQ 745 (1622)
T PLN03130 678 RGTVAYVPQVSWIFNA-TVRDNILFGSP------FDPE----RYERAIDVTALQHDLDLLPGGDLTEIGERG-VNISGGQ 745 (1622)
T ss_pred cCeEEEEcCccccCCC-CHHHHHhCCCc------ccHH----HHHHHHHHhCcHHHHHhCCCcccccccCCC-CCCCHHH
Confidence 4579999999999975 99999999732 1222 233333322 35778899998764 5699999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecC
Q 006571 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ-MLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (640)
Q Consensus 301 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~-~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (640)
||||+||||++++|+|+|||||||+||+.++.++++ .++.+. +++|+|++||+++ ....||+|++|++|++++.|+
T Consensus 746 KQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l-~~kTvIlVTH~l~--~l~~aD~Ii~L~~G~i~e~Gt 822 (1622)
T PLN03130 746 KQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL-RGKTRVLVTNQLH--FLSQVDRIILVHEGMIKEEGT 822 (1622)
T ss_pred HHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh-cCCEEEEEECCHh--HHHhCCEEEEEeCCEEEEeCC
Confidence 999999999999999999999999999999998865 556554 5899999999975 467899999999999999999
Q ss_pred hHHHHH
Q 006571 380 ASEAMA 385 (640)
Q Consensus 380 ~~~~~~ 385 (640)
++++.+
T Consensus 823 ~~eL~~ 828 (1622)
T PLN03130 823 YEELSN 828 (1622)
T ss_pred HHHHHh
Confidence 999864
No 326
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.3e-37 Score=353.72 Aligned_cols=210 Identities=28% Similarity=0.382 Sum_probs=173.0
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhc
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (640)
.+|+++||+++|. +++++|+||||+|++|++++|+|||||||||||++|+|.+. +.+|+|.+++.
T Consensus 5 ~~l~i~~l~~~y~-------~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~--p~~G~i~~~~~------ 69 (556)
T PRK11819 5 YIYTMNRVSKVVP-------PKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK--EFEGEARPAPG------ 69 (556)
T ss_pred EEEEEeeEEEEeC-------CCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEecCC------
Confidence 4799999999981 14679999999999999999999999999999999999653 46899999752
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhc---------------cCCCC-cc-----------------HHHHHHHHHHH
Q 006571 228 KSKIGFVTQDDVLFPHLTVKETLTYAALL---------------RLPNT-LT-----------------KQQKEKRAIDV 274 (640)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~---------------~~~~~-~~-----------------~~~~~~~v~~~ 274 (640)
..||||+|++.+++.+||.||+.++... ..+.. .. ..+..+++.++
T Consensus 70 -~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (556)
T PRK11819 70 -IKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIA 148 (556)
T ss_pred -CEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHH
Confidence 4699999999999999999999875320 00000 00 00123467788
Q ss_pred HHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Q 006571 275 INELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQ 354 (640)
Q Consensus 275 l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~ 354 (640)
++.+||.. .+. .+..|||||||||+|||+|+.+|++|||||||++||+.+...+.+.|+++ +.|||++||+
T Consensus 149 l~~~gl~~-~~~-----~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~---~~tviiisHd 219 (556)
T PRK11819 149 MDALRCPP-WDA-----KVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY---PGTVVAVTHD 219 (556)
T ss_pred HHhCCCCc-ccC-----chhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC---CCeEEEEeCC
Confidence 99999953 444 45689999999999999999999999999999999999999999999886 3599999999
Q ss_pred CCcHHHhccCEEEEEcCCeEE-EecChHHH
Q 006571 355 PSSRLFHKFDKLILLGKGSLL-YFGKASEA 383 (640)
Q Consensus 355 ~~~~i~~~~D~i~vL~~G~iv-~~G~~~~~ 383 (640)
+. .+...||+|++|++|+++ +.|+.++.
T Consensus 220 ~~-~~~~~~d~i~~l~~g~i~~~~g~~~~~ 248 (556)
T PRK11819 220 RY-FLDNVAGWILELDRGRGIPWEGNYSSW 248 (556)
T ss_pred HH-HHHhhcCeEEEEeCCEEEEecCCHHHH
Confidence 75 477889999999999986 88987764
No 327
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=4.6e-39 Score=371.55 Aligned_cols=338 Identities=16% Similarity=0.165 Sum_probs=219.9
Q ss_pred hHhHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeecccccc--ceecchh
Q 006571 8 TSLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQL--KLELDEV 85 (640)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 85 (640)
.++.++.++..++..+..+|...+.++|++|+++..+.+++.++.........+................. -..+.-+
T Consensus 264 ~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 343 (659)
T TIGR00954 264 GKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNIVAKYTWSAVGLV 343 (659)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 46778889999999999999999999999999999999999887776655533321111111011111000 0001111
Q ss_pred chhhhHhh-h----hhhhhhhhhc-cccC-------------------CCCccccccCCCCCCCCCcccccccc----CC
Q 006571 86 SSGAALSR-A----SSASLGLSFS-FTGF-------------------TMPPDEIADSKPFSDDDIPEDIEAGT----RE 136 (640)
Q Consensus 86 ~~g~~~~~-~----~~~~~g~~~~-~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 136 (640)
..|..... . +..+.|.+.+ |..+ ++........+.++..+..+++.... ..
T Consensus 344 ~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~ 423 (659)
T TIGR00954 344 AVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLDDVKSGNFKRPRV 423 (659)
T ss_pred HHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 12221111 1 2222222221 1110 11111112222222222111111000 00
Q ss_pred C------------CC---CCCCCCCCeeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHH
Q 006571 137 R------------PK---FQTEPTLPIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLN 201 (640)
Q Consensus 137 ~------------~~---~~~~~~~~~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~ 201 (640)
. +. ..........|+++||++.|+ +++++|+|+||+|++||+++|+||||||||||++
T Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~-------~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~ 496 (659)
T TIGR00954 424 EEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTP-------NGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFR 496 (659)
T ss_pred ccccccccccccccccccccccccCCCeEEEEeeEEECC-------CCCeeeecceEEECCCCEEEEECCCCCCHHHHHH
Confidence 0 00 000011123699999999872 2347999999999999999999999999999999
Q ss_pred HHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCC
Q 006571 202 LLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE 281 (640)
Q Consensus 202 ~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 281 (640)
+|+|.. ++.+|+|.+++ +++++||+|++.+++. |++||+.++....... .....++++.++++.++|.
T Consensus 497 lL~Gl~--~~~~G~i~~~~-------~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~--~~~~~~~~i~~~l~~~~l~ 564 (659)
T TIGR00954 497 ILGELW--PVYGGRLTKPA-------KGKLFYVPQRPYMTLG-TLRDQIIYPDSSEDMK--RRGLSDKDLEQILDNVQLT 564 (659)
T ss_pred HHhCCC--CCCCCeEeecC-------CCcEEEECCCCCCCCc-CHHHHHhcCCChhhhh--ccCCCHHHHHHHHHHcCCH
Confidence 999954 35689998864 4679999999999987 9999999864211000 0001234567888888887
Q ss_pred cccc------ccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCC
Q 006571 282 RCQD------TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 355 (640)
Q Consensus 282 ~~~~------t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~ 355 (640)
+..+ +..+ ....||||||||++|||||+++|+++||||||++||+.++..+.+.+++ .|+|+|+++|++
T Consensus 565 ~~~~~~~g~~~~~~--~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~---~~~tvI~isH~~ 639 (659)
T TIGR00954 565 HILEREGGWSAVQD--WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE---FGITLFSVSHRK 639 (659)
T ss_pred HHHhhcCCcccccc--cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH---cCCEEEEEeCch
Confidence 6443 3322 3468999999999999999999999999999999999999999998876 389999999997
Q ss_pred CcHHHhccCEEEEEcC
Q 006571 356 SSRLFHKFDKLILLGK 371 (640)
Q Consensus 356 ~~~i~~~~D~i~vL~~ 371 (640)
+. .+.||++++|+.
T Consensus 640 ~~--~~~~d~il~l~~ 653 (659)
T TIGR00954 640 SL--WKYHEYLLYMDG 653 (659)
T ss_pred HH--HHhCCEEEEEeC
Confidence 63 578999999974
No 328
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=1.2e-37 Score=349.10 Aligned_cols=215 Identities=21% Similarity=0.375 Sum_probs=172.3
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (640)
..|+++|++++| +++.+|+|+||+|++||+++|+||||||||||+|+|+|.. +++.+|+|.++|+++..
T Consensus 259 ~~l~~~~l~~~~--------~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~-~~~~~G~i~~~g~~~~~~~ 329 (490)
T PRK10938 259 PRIVLNNGVVSY--------NDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDH-PQGYSNDLTLFGRRRGSGE 329 (490)
T ss_pred ceEEEeceEEEE--------CCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCC-CcccCCeEEEecccCCCCC
Confidence 369999999998 3456999999999999999999999999999999999953 22258999999987521
Q ss_pred ---hccCcEEEEccCCCCCC--CCCHHHHHHHHHhc--cCCCCccHHHHHHHHHHHHHHcCCCc-cccccccCccCCcCC
Q 006571 226 ---SLKSKIGFVTQDDVLFP--HLTVKETLTYAALL--RLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVS 297 (640)
Q Consensus 226 ---~~~~~i~yV~Q~~~l~~--~lTV~Enl~~~~~~--~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~LS 297 (640)
..++.++|++|++.++. ..|+++++.++... ....... ...+++++++++.++|.+ ..++. +..||
T Consensus 330 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS 403 (490)
T PRK10938 330 TIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVS-DRQQKLAQQWLDILGIDKRTADAP-----FHSLS 403 (490)
T ss_pred CHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCC-HHHHHHHHHHHHHcCCchhhccCc-----hhhCC
Confidence 23567999999976543 24777776544211 0001111 223456889999999986 55543 46899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCC-EEEEEeCCCCcHHHh-ccCEEEEEcCCeEE
Q 006571 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGK-TVVTTIHQPSSRLFH-KFDKLILLGKGSLL 375 (640)
Q Consensus 298 GGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~-TvI~~tH~~~~~i~~-~~D~i~vL~~G~iv 375 (640)
|||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++++. |||++||++.. +.+ +||++++|++|+++
T Consensus 404 gGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~-~~~~~~d~v~~l~~G~i~ 482 (490)
T PRK10938 404 WGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAED-APACITHRLEFVPDGDIY 482 (490)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhh-hhhhhheeEEEecCCceE
Confidence 9999999999999999999999999999999999999999999987754 79999999754 555 58999999999987
Q ss_pred Eec
Q 006571 376 YFG 378 (640)
Q Consensus 376 ~~G 378 (640)
+.-
T Consensus 483 ~~~ 485 (490)
T PRK10938 483 RYV 485 (490)
T ss_pred Eee
Confidence 754
No 329
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-37 Score=348.14 Aligned_cols=215 Identities=20% Similarity=0.369 Sum_probs=175.5
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (640)
..|+++|+++.+ +.+|+||||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 249 ~~i~~~~l~~~~----------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~ 316 (491)
T PRK10982 249 VILEVRNLTSLR----------QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIRE--KSAGTITLHGKKINNHN 316 (491)
T ss_pred cEEEEeCccccc----------CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCc--CCccEEEECCEECCCCC
Confidence 369999998852 359999999999999999999999999999999999653 468999999988742
Q ss_pred ---hccCcEEEEccCC---CCCCCCCHHHHHHHHHh--ccCCCC-ccHHHHHHHHHHHHHHcCCC-ccccccccCccCCc
Q 006571 226 ---SLKSKIGFVTQDD---VLFPHLTVKETLTYAAL--LRLPNT-LTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRG 295 (640)
Q Consensus 226 ---~~~~~i~yV~Q~~---~l~~~lTV~Enl~~~~~--~~~~~~-~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~ 295 (640)
..++.++|++|++ .+|+.+|+.+|+.+... ...... ......++.+.++++.+++. +..++ .+.+
T Consensus 317 ~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~ 391 (491)
T PRK10982 317 ANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRT-----QIGS 391 (491)
T ss_pred HHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCccc-----cccc
Confidence 2356699999985 47888998877433210 000001 12233456678899999985 34444 4578
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEE
Q 006571 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (640)
Q Consensus 296 LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv 375 (640)
|||||||||+|||+|+.+|+||||||||+|||+.++..+++.|+++.++|+|||++||++. ++.++||++++|++|+++
T Consensus 392 LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~-~~~~~~d~v~~l~~g~i~ 470 (491)
T PRK10982 392 LSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMP-ELLGITDRILVMSNGLVA 470 (491)
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChH-HHHhhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999999888999999999975 577899999999999999
Q ss_pred EecCh
Q 006571 376 YFGKA 380 (640)
Q Consensus 376 ~~G~~ 380 (640)
..++.
T Consensus 471 ~~~~~ 475 (491)
T PRK10982 471 GIVDT 475 (491)
T ss_pred EEEcc
Confidence 87755
No 330
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=3.8e-37 Score=349.71 Aligned_cols=211 Identities=27% Similarity=0.369 Sum_probs=171.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhcc
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~ 228 (640)
+|+++||+++|. +++++|+|+||+|++|++++|+|||||||||||++|+|... +.+|+|.+++ +
T Consensus 4 ~i~~~nls~~~~-------~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~--p~~G~i~~~~-------~ 67 (552)
T TIGR03719 4 IYTMNRVSKVVP-------PKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK--EFNGEARPAP-------G 67 (552)
T ss_pred EEEEeeEEEecC-------CCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEecC-------C
Confidence 699999999982 14579999999999999999999999999999999999653 4689999975 2
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhc-cC-----------CCCccHH---------------------HHHHHHHHHH
Q 006571 229 SKIGFVTQDDVLFPHLTVKETLTYAALL-RL-----------PNTLTKQ---------------------QKEKRAIDVI 275 (640)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~Enl~~~~~~-~~-----------~~~~~~~---------------------~~~~~v~~~l 275 (640)
..||||+|++.+++.+||+||+.++... +. ......+ ....++.+++
T Consensus 68 ~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 147 (552)
T TIGR03719 68 IKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAM 147 (552)
T ss_pred CEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHH
Confidence 4699999999999999999999875321 00 0000010 0123466677
Q ss_pred HHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCC
Q 006571 276 NELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 355 (640)
Q Consensus 276 ~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~ 355 (640)
+.+|++. .+. .+..|||||||||+|||+|+.+|++|||||||++||+.++..+.+.|+++ +.|||++||++
T Consensus 148 ~~~~l~~-~~~-----~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tvIiisHd~ 218 (552)
T TIGR03719 148 DALRCPP-WDA-----DVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTVVAVTHDR 218 (552)
T ss_pred hhCCCCc-ccC-----chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeEEEEeCCH
Confidence 7788853 343 45689999999999999999999999999999999999999999999875 35999999996
Q ss_pred CcHHHhccCEEEEEcCCeEE-EecChHHHHH
Q 006571 356 SSRLFHKFDKLILLGKGSLL-YFGKASEAMA 385 (640)
Q Consensus 356 ~~~i~~~~D~i~vL~~G~iv-~~G~~~~~~~ 385 (640)
. .+...||++++|++|+++ +.|+.++..+
T Consensus 219 ~-~~~~~~d~v~~l~~g~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 219 Y-FLDNVAGWILELDRGRGIPWEGNYSSWLE 248 (552)
T ss_pred H-HHHhhcCeEEEEECCEEEEecCCHHHHHH
Confidence 5 477889999999999976 7898876543
No 331
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-37 Score=348.65 Aligned_cols=203 Identities=23% Similarity=0.368 Sum_probs=171.8
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhc
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (640)
..|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.
T Consensus 318 ~~l~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--p~~G~i~~~~~------ 381 (530)
T PRK15064 318 NALEVENLTKGF--------DNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELE--PDSGTVKWSEN------ 381 (530)
T ss_pred ceEEEEeeEEee--------CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCc------
Confidence 369999999998 34579999999999999999999999999999999999653 46899999873
Q ss_pred cCcEEEEccCCC--CCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCccCCcCCHHHHHHH
Q 006571 228 KSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKRV 304 (640)
Q Consensus 228 ~~~i~yV~Q~~~--l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqrqRv 304 (640)
+.+|||+|++. +++.+||.||+.+.. .. . ..++++.++++.+|+. +..+. .+..||||||||+
T Consensus 382 -~~i~~~~q~~~~~~~~~~t~~~~~~~~~---~~-~----~~~~~~~~~l~~~~l~~~~~~~-----~~~~LSgGq~qrv 447 (530)
T PRK15064 382 -ANIGYYAQDHAYDFENDLTLFDWMSQWR---QE-G----DDEQAVRGTLGRLLFSQDDIKK-----SVKVLSGGEKGRM 447 (530)
T ss_pred -eEEEEEcccccccCCCCCcHHHHHHHhc---cC-C----ccHHHHHHHHHHcCCChhHhcC-----cccccCHHHHHHH
Confidence 46999999964 566789999987521 11 1 1234578899999994 44554 4578999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEE-EecChHHH
Q 006571 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL-YFGKASEA 383 (640)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv-~~G~~~~~ 383 (640)
+|||+|+.+|+||||||||+|||+.++..+.+.|+++ +.|||++||++. .+..+||++++|++|+++ +.|+++++
T Consensus 448 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~~~~~~d~i~~l~~g~i~~~~g~~~~~ 523 (530)
T PRK15064 448 LFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDRE-FVSSLATRIIEITPDGVVDFSGTYEEY 523 (530)
T ss_pred HHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEcCCCHHHH
Confidence 9999999999999999999999999999999999876 459999999975 577889999999999998 88988876
Q ss_pred H
Q 006571 384 M 384 (640)
Q Consensus 384 ~ 384 (640)
+
T Consensus 524 ~ 524 (530)
T PRK15064 524 L 524 (530)
T ss_pred H
Confidence 4
No 332
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=2.8e-37 Score=309.70 Aligned_cols=195 Identities=21% Similarity=0.218 Sum_probs=159.4
Q ss_pred cceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEE-ECCEeCChhccCcEEEEccCCCCCCCCCHHHH
Q 006571 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT-YNDHPYSKSLKSKIGFVTQDDVLFPHLTVKET 249 (640)
Q Consensus 171 ~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~-~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~En 249 (640)
.+|+||||+|++|++++|+||||||||||+|+|+|... +.+|+|. ++|..+ .+.+++.+++.+|++||
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~--~~sG~i~~~~~~~~---------~~~~~~~l~~~ltv~en 69 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDA--PDEGDFIGLRGDAL---------PLGANSFILPGLTGEEN 69 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc--CCCCCEEEecCcee---------ccccccccCCcCcHHHH
Confidence 37999999999999999999999999999999999643 5689997 777543 13356778899999999
Q ss_pred HHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 006571 250 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST 329 (640)
Q Consensus 250 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~ 329 (640)
+.+...... ....+.. +.+.+.++|++..++. ++.||||||||++|||||+.+|+++||||||++||+.
T Consensus 70 l~~~~~~~~---~~~~~~~---~~~~~~~~l~~~~~~~-----~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~ 138 (213)
T PRK15177 70 ARMMASLYG---LDGDEFS---HFCYQLTQLEQCYTDR-----VSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNA 138 (213)
T ss_pred HHHHHHHcC---CCHHHHH---HHHHHHhChhHHhhch-----HhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHH
Confidence 998765321 2222222 2333456777666654 4689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHHHHHh
Q 006571 330 TALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSS 389 (640)
Q Consensus 330 s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~~f~~ 389 (640)
++..+.+.|.+..+ ++|+|+++|++. .+..+||++++|++|++++.|+.+++.++++.
T Consensus 139 ~~~~~~~~l~~~~~-~~~ii~vsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~ 196 (213)
T PRK15177 139 TQLRMQAALACQLQ-QKGLIVLTHNPR-LIKEHCHAFGVLLHGKITMCEDLAQATALFEQ 196 (213)
T ss_pred HHHHHHHHHHHHhh-CCcEEEEECCHH-HHHHhcCeeEEEECCeEEEeCCHHHHHHHHHH
Confidence 99999998866544 578999999976 46678999999999999999999999887764
No 333
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-37 Score=308.67 Aligned_cols=216 Identities=28% Similarity=0.481 Sum_probs=182.6
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC---
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--- 224 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~--- 224 (640)
..|+++||+.+| .+|+||+|+|++|+|||-.+|+|||||||||||++++|.. ++.+|.+.+.|+...
T Consensus 30 ~li~l~~v~v~r--------~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~--~pssg~~~~~G~~~G~~~ 99 (257)
T COG1119 30 PLIELKNVSVRR--------NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEH--PPSSGDVTLLGRRFGKGE 99 (257)
T ss_pred ceEEecceEEEE--------CCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhccc--CCCCCceeeeeeeccCCc
Confidence 469999999998 5789999999999999999999999999999999999944 355899999999864
Q ss_pred --hhccCcEEEEccC--CCCCCCCCHHHHHHHHHh--ccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCH
Q 006571 225 --KSLKSKIGFVTQD--DVLFPHLTVKETLTYAAL--LRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (640)
Q Consensus 225 --~~~~~~i~yV~Q~--~~l~~~lTV~Enl~~~~~--~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (640)
.++|++||+|.-+ ..+.+..+|+|-+.-+.. .-.......++..+++..+++.+|+.+..|... ..||-
T Consensus 100 ~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~-----~~LS~ 174 (257)
T COG1119 100 TIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPF-----GSLSQ 174 (257)
T ss_pred chHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCch-----hhcCH
Confidence 3679999999854 344556788888763321 111111234556778899999999998887654 58999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEE
Q 006571 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA--GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (640)
Q Consensus 299 GqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~--g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (640)
||||||-|||||+.+|++||||||++|||..+++.+++.|.+++.. +.++|+|||+.. ++-..+++++++++|++++
T Consensus 175 Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~e-Ei~~~~th~lll~~g~v~~ 253 (257)
T COG1119 175 GEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAE-EIPPCFTHRLLLKEGEVVA 253 (257)
T ss_pred hHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchh-hcccccceEEEeeCCceee
Confidence 9999999999999999999999999999999999999999999865 789999999965 5778899999999999999
Q ss_pred ecC
Q 006571 377 FGK 379 (640)
Q Consensus 377 ~G~ 379 (640)
.|.
T Consensus 254 ~g~ 256 (257)
T COG1119 254 QGK 256 (257)
T ss_pred ccc
Confidence 884
No 334
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=4e-37 Score=320.81 Aligned_cols=227 Identities=25% Similarity=0.451 Sum_probs=196.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC---cccEEEECCEeCC-
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT---VGGSITYNDHPYS- 224 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~---~~G~I~~~G~~~~- 224 (640)
.|+++|++..+... .+...++++|||+|++||.+||||.||||||-..+.+.|.+..+. .+|+|.|+|+++-
T Consensus 6 lL~v~nLsV~f~~~----~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~ 81 (534)
T COG4172 6 LLSIRNLSVAFHQE----GGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLA 81 (534)
T ss_pred ceeeeccEEEEecC----CcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhc
Confidence 58999999998543 356789999999999999999999999999999999998776532 4799999999873
Q ss_pred ---hh---cc-CcEEEEccCC--CCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCc
Q 006571 225 ---KS---LK-SKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRG 295 (640)
Q Consensus 225 ---~~---~~-~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~ 295 (640)
+. +| .+|+++||+| .|.|-.|+...|.-...+. ..+++++.++++.++|+.+|+++-.... +.++++
T Consensus 82 ~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~H--rg~~~~~Ar~r~lelL~~VgI~~p~~rl--~~yPHe 157 (534)
T COG4172 82 ASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLH--RGLSRAAARARALELLELVGIPEPEKRL--DAYPHE 157 (534)
T ss_pred CCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHH--hcccHHHHHHHHHHHHHHcCCCchhhhh--hhCCcc
Confidence 12 23 4799999998 4677778888887665543 4577888899999999999998755433 568899
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeE
Q 006571 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (640)
Q Consensus 296 LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~i 374 (640)
|||||||||.||+||+.+|++||.||||++||..-+.+|+++|++|.++ |..+++||||+. .+.+++|||+||.+|++
T Consensus 158 LSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~-iVr~~ADrV~VM~~G~i 236 (534)
T COG4172 158 LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLG-IVRKFADRVYVMQHGEI 236 (534)
T ss_pred cCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHH-HHHHhhhhEEEEeccEE
Confidence 9999999999999999999999999999999999999999999999754 999999999976 47788999999999999
Q ss_pred EEecChHHHH
Q 006571 375 LYFGKASEAM 384 (640)
Q Consensus 375 v~~G~~~~~~ 384 (640)
++.|+.+++.
T Consensus 237 vE~~~t~~lF 246 (534)
T COG4172 237 VETGTTETLF 246 (534)
T ss_pred eecCcHHHHh
Confidence 9999988875
No 335
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.4e-37 Score=311.58 Aligned_cols=194 Identities=26% Similarity=0.438 Sum_probs=166.1
Q ss_pred eEEEEeEEEEEeeccccccc-cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhc
Q 006571 149 YLKFTDVTYKVILKGMTSSE-EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (640)
.++++|+++.|..+...... ...+++||||+|++||+++|||.||||||||-|+|.|.. . +++|+|+++|+++....
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~-~-pt~G~i~f~g~~i~~~~ 81 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLE-E-PTSGEILFEGKDITKLS 81 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCc-C-CCCceEEEcCcchhhcc
Confidence 58999999999764311111 247999999999999999999999999999999999754 3 46999999999864311
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHH
Q 006571 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (640)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (640)
+++..+++.++|+.+||.... ..+++++||||||||++||
T Consensus 82 ------------------------------------~~~~~~~v~elL~~Vgl~~~~----~~ryPhelSGGQrQRi~IA 121 (268)
T COG4608 82 ------------------------------------KEERRERVLELLEKVGLPEEF----LYRYPHELSGGQRQRIGIA 121 (268)
T ss_pred ------------------------------------hhHHHHHHHHHHHHhCCCHHH----hhcCCcccCchhhhhHHHH
Confidence 334567799999999986422 2357899999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHH
Q 006571 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (640)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (640)
|||+.+|+++++|||||+||...+.+|+++|+++.++ |.|.++++||++ .+..++|||.+|+.|+|++.|+.+++..
T Consensus 122 RALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~-vv~~isdri~VMy~G~iVE~g~~~~~~~ 199 (268)
T COG4608 122 RALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLS-VVRYISDRIAVMYLGKIVEIGPTEEVFS 199 (268)
T ss_pred HHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHH-hhhhhcccEEEEecCceeEecCHHHHhh
Confidence 9999999999999999999999999999999999865 999999999976 4778899999999999999999999863
No 336
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1.1e-36 Score=311.93 Aligned_cols=190 Identities=25% Similarity=0.305 Sum_probs=155.4
Q ss_pred cceeceEEEEe-----CCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCC
Q 006571 171 DILNGITGSVN-----PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLT 245 (640)
Q Consensus 171 ~iL~~vs~~i~-----~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lT 245 (640)
..|+|+++++. +||+++|+||||||||||+++|+|... +.+|+|.++|. .|+|++|++..++.+|
T Consensus 8 ~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~--p~~G~i~~~g~--------~i~~~~q~~~~~~~~t 77 (246)
T cd03237 8 KTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLK--PDEGDIEIELD--------TVSYKPQYIKADYEGT 77 (246)
T ss_pred cccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCc--CCCCeEEECCc--------eEEEecccccCCCCCC
Confidence 46777777776 799999999999999999999999653 56899999985 5999999988777789
Q ss_pred HHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 006571 246 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 325 (640)
Q Consensus 246 V~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsg 325 (640)
|+||+.+...... . ....+.++++.++|.+..++. +..|||||||||+||++|+.+|+++||||||++
T Consensus 78 v~e~l~~~~~~~~----~---~~~~~~~~l~~l~l~~~~~~~-----~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~ 145 (246)
T cd03237 78 VRDLLSSITKDFY----T---HPYFKTEIAKPLQIEQILDRE-----VPELSGGELQRVAIAACLSKDADIYLLDEPSAY 145 (246)
T ss_pred HHHHHHHHhhhcc----c---cHHHHHHHHHHcCCHHHhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 9999976532110 0 122356788899998766653 468999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEE--EecChHHH
Q 006571 326 LDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLL--YFGKASEA 383 (640)
Q Consensus 326 LD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv--~~G~~~~~ 383 (640)
||+.++..+.+.|++++++ |+|||+++|++. .+..+||+|++|+++..+ ..+++.++
T Consensus 146 LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~-~~~~~~d~i~~l~~~~~~~~~~~~~~~~ 205 (246)
T cd03237 146 LDVEQRLMASKVIRRFAENNEKTAFVVEHDII-MIDYLADRLIVFEGEPSVNGVANPPQSL 205 (246)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEcCCCeeEEEeCCchHH
Confidence 9999999999999999764 899999999965 466789999999765333 44555554
No 337
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=3.3e-37 Score=308.31 Aligned_cols=208 Identities=27% Similarity=0.419 Sum_probs=180.4
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC---hhccCcEEEEc-cCCCCCCCCC
Q 006571 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---KSLKSKIGFVT-QDDVLFPHLT 245 (640)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~---~~~~~~i~yV~-Q~~~l~~~lT 245 (640)
.++.+||||+|++|++++++|||||||||+||+|+|.+. +.+|.|.++|.+.. +++-+++++|+ |...+.-.+.
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~--p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp 114 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLL--PTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLP 114 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccc--cCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeech
Confidence 458999999999999999999999999999999999765 56999999998753 23446687776 4456665677
Q ss_pred HHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 006571 246 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 325 (640)
Q Consensus 246 V~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsg 325 (640)
+.|.+....... .++.++..++.+.+.+.++|+...+.. ++.||-|||.|+.||.+|+++|+||||||||-|
T Consensus 115 ~~ds~~v~~~Iy---~Ipd~~F~~r~~~l~eiLdl~~~lk~~-----vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvg 186 (325)
T COG4586 115 ALDSLEVLKLIY---EIPDDEFAERLDFLTEILDLEGFLKWP-----VRKLSLGQRMRAELAAALLHPPKVLFLDEPTVG 186 (325)
T ss_pred hhhhHHHHHHHH---hCCHHHHHHHHHHHHHHhcchhhhhhh-----hhhccchHHHHHHHHHHhcCCCcEEEecCCccC
Confidence 888887654432 567888889999999999998777654 588999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHHHHH
Q 006571 326 LDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFS 388 (640)
Q Consensus 326 LD~~s~~~i~~~L~~l~~-~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~~f~ 388 (640)
||..++..|.+.|++..+ .+.||+.+||+.+ ++..+||||++|+.|+++|.|+.+++.+-|.
T Consensus 187 LDV~aq~~ir~Flke~n~~~~aTVllTTH~~~-di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f~ 249 (325)
T COG4586 187 LDVNAQANIREFLKEYNEERQATVLLTTHIFD-DIATLCDRVLLIDQGQLVFDGTLAQLQEQFG 249 (325)
T ss_pred cchhHHHHHHHHHHHHHHhhCceEEEEecchh-hHHHhhhheEEeeCCcEeecccHHHHHHHhC
Confidence 999999999999999975 4899999999976 4889999999999999999999999987664
No 338
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=2.7e-36 Score=342.90 Aligned_cols=205 Identities=22% Similarity=0.372 Sum_probs=168.7
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhc
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (640)
..|+++||++.| +++.+|+||||+|++||+++|+||||||||||+++|+|... +.+|+|.+++.
T Consensus 323 ~~l~~~~l~~~~--------~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--p~~G~i~~~~~------ 386 (556)
T PRK11819 323 KVIEAENLSKSF--------GDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ--PDSGTIKIGET------ 386 (556)
T ss_pred eEEEEEeEEEEE--------CCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCc------
Confidence 469999999998 34579999999999999999999999999999999999653 56899999542
Q ss_pred cCcEEEEccCC-CCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCc-cccccccCccCCcCCHHHHHHHH
Q 006571 228 KSKIGFVTQDD-VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRVC 305 (640)
Q Consensus 228 ~~~i~yV~Q~~-~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~LSGGqrqRv~ 305 (640)
..||||+|++ .+++.+||.||+.++..... ... ....+.++++.++|.+ ..+. .+.+|||||||||+
T Consensus 387 -~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~--~~~~~~~~l~~~~l~~~~~~~-----~~~~LSgG~~qrv~ 455 (556)
T PRK11819 387 -VKLAYVDQSRDALDPNKTVWEEISGGLDIIK---VGN--REIPSRAYVGRFNFKGGDQQK-----KVGVLSGGERNRLH 455 (556)
T ss_pred -eEEEEEeCchhhcCCCCCHHHHHHhhccccc---ccc--cHHHHHHHHHhCCCChhHhcC-----chhhCCHHHHHHHH
Confidence 1599999996 78888999999998643211 111 1223456899999963 3444 35689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcC-CeEE-EecChHHH
Q 006571 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK-GSLL-YFGKASEA 383 (640)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~-G~iv-~~G~~~~~ 383 (640)
|||+|+.+|++|||||||+|||+.++..+.+.|+++. | |||++||++. .+..+||+|++|++ |++. +.|+.++.
T Consensus 456 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~~-~~~~~~d~i~~l~~~g~~~~~~g~~~~~ 531 (556)
T PRK11819 456 LAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--G-CAVVISHDRW-FLDRIATHILAFEGDSQVEWFEGNFQEY 531 (556)
T ss_pred HHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCHH-HHHHhCCEEEEEECCCeEEEecCCHHHH
Confidence 9999999999999999999999999999999999872 4 8999999965 57788999999986 7876 56765543
No 339
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=9.3e-36 Score=338.32 Aligned_cols=204 Identities=25% Similarity=0.393 Sum_probs=168.0
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhc
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (640)
..|+++||+++| +++.+|+|+||+|++|++++|+||||||||||+++|+|... +.+|+|.+++.
T Consensus 321 ~~l~~~~l~~~~--------~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~--p~~G~i~~~~~------ 384 (552)
T TIGR03719 321 KVIEAENLSKGF--------GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ--PDSGTIKIGET------ 384 (552)
T ss_pred eEEEEeeEEEEE--------CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCeEEEECCc------
Confidence 369999999998 34579999999999999999999999999999999999653 56899999542
Q ss_pred cCcEEEEccCC-CCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCc-cccccccCccCCcCCHHHHHHHH
Q 006571 228 KSKIGFVTQDD-VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRVC 305 (640)
Q Consensus 228 ~~~i~yV~Q~~-~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~LSGGqrqRv~ 305 (640)
..|||++|++ .+++.+||.||+.++.... ..... +.++.++++.+||.+ ..+. .+..|||||||||+
T Consensus 385 -~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~--~~~~~~~l~~~~l~~~~~~~-----~~~~LSgGe~qrv~ 453 (552)
T TIGR03719 385 -VKLAYVDQSRDALDPNKTVWEEISGGLDII---QLGKR--EVPSRAYVGRFNFKGSDQQK-----KVGQLSGGERNRVH 453 (552)
T ss_pred -eEEEEEeCCccccCCCCcHHHHHHhhcccc---ccCcc--hHHHHHHHHhCCCChhHhcC-----chhhCCHHHHHHHH
Confidence 1599999996 4788899999999864321 11111 223557899999964 3444 34689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcC-CeEE-EecChHH
Q 006571 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK-GSLL-YFGKASE 382 (640)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~-G~iv-~~G~~~~ 382 (640)
|||+|+.+|++|||||||+|||+.++..+.+.|+++. + |||++||++. .+.++||+|++|++ |+++ +.|+.++
T Consensus 454 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-~viivsHd~~-~~~~~~d~i~~l~~~~~~~~~~g~~~~ 528 (552)
T TIGR03719 454 LAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--G-CAVVISHDRW-FLDRIATHILAFEGDSHVEWFEGNYSE 528 (552)
T ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--C-eEEEEeCCHH-HHHHhCCEEEEEECCCeEEEeCCCHHH
Confidence 9999999999999999999999999999999999872 4 8999999965 57788999999986 5876 5676654
No 340
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.1e-36 Score=289.28 Aligned_cols=220 Identities=27% Similarity=0.441 Sum_probs=189.9
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECC-EeCCh-
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND-HPYSK- 225 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G-~~~~~- 225 (640)
..|+++||+.++ +.-.+|+|+||++.|||+-+|+|||||||||+|++|+|.. ++..|+|+++| .++++
T Consensus 4 ~iL~~~~vsVsF--------~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKt--rp~~G~v~f~g~~dl~~~ 73 (249)
T COG4674 4 IILYLDGVSVSF--------GGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKT--RPQEGEVLFDGDTDLTKL 73 (249)
T ss_pred ceEEEeceEEEE--------cceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccC--CCCcceEEEcCchhhccC
Confidence 468999999998 5667999999999999999999999999999999999954 35689999999 77753
Q ss_pred ----hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCC-----CccHHHHHHHHHHHHHHcCCCccccccccCccCCcC
Q 006571 226 ----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN-----TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296 (640)
Q Consensus 226 ----~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~L 296 (640)
..|.-||--||.|..|+.+||+|||.++.....+- .-...+.+++++++|...||.+.++... ..|
T Consensus 74 ~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A-----~~L 148 (249)
T COG4674 74 PEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLA-----ALL 148 (249)
T ss_pred CHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhh-----hhh
Confidence 23667999999999999999999999875432110 0113445668999999999998887654 479
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEE
Q 006571 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (640)
Q Consensus 297 SGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (640)
|-||||++.|++-++.+|++|+||||++|+--....+.-++|+.++. +++|+++-||.. .+.+++|+|.||++|.+..
T Consensus 149 SHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~-~hsilVVEHDM~-Fvr~~A~~VTVlh~G~VL~ 226 (249)
T COG4674 149 SHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG-KHSILVVEHDMG-FVREIADKVTVLHEGSVLA 226 (249)
T ss_pred ccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc-CceEEEEeccHH-HHHHhhheeEEEeccceee
Confidence 99999999999999999999999999999998888999999999986 689999999965 5888999999999999999
Q ss_pred ecChHHHH
Q 006571 377 FGKASEAM 384 (640)
Q Consensus 377 ~G~~~~~~ 384 (640)
.|+.+++.
T Consensus 227 EGsld~v~ 234 (249)
T COG4674 227 EGSLDEVQ 234 (249)
T ss_pred cccHHHhh
Confidence 99998874
No 341
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=4.1e-36 Score=309.11 Aligned_cols=199 Identities=26% Similarity=0.364 Sum_probs=163.0
Q ss_pred eEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEE-----------ECCEe
Q 006571 154 DVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT-----------YNDHP 222 (640)
Q Consensus 154 ~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~-----------~~G~~ 222 (640)
||+++|. +.+.+|+|+| .+++||+++|+||||||||||+|+|+|... +++|+|. ++|++
T Consensus 5 ~~~~~y~-------~~~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~--p~~G~I~~~~~~~~~~~~~~g~~ 74 (255)
T cd03236 5 EPVHRYG-------PNSFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLK--PNLGKFDDPPDWDEILDEFRGSE 74 (255)
T ss_pred Ccceeec-------CcchhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcC--CCCceEeeccccchhhhhccCch
Confidence 5778872 2236999999 599999999999999999999999999643 5689996 88887
Q ss_pred CCh---hcc---CcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcC
Q 006571 223 YSK---SLK---SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296 (640)
Q Consensus 223 ~~~---~~~---~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~L 296 (640)
+.. ..+ ..++|++|+..+++. ++.+++.+.. .....++.+.++++.+||.+..+. .+..|
T Consensus 75 ~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~i~~~l--------~~~~~~~~~~~~l~~~gl~~~~~~-----~~~~L 140 (255)
T cd03236 75 LQNYFTKLLEGDVKVIVKPQYVDLIPK-AVKGKVGELL--------KKKDERGKLDELVDQLELRHVLDR-----NIDQL 140 (255)
T ss_pred hhhhhHHhhhcccceeeecchhccCch-HHHHHHHHHh--------chhHHHHHHHHHHHHcCCchhhcC-----ChhhC
Confidence 643 112 247999999888874 8888887642 122334567889999999876554 34689
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEE
Q 006571 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (640)
Q Consensus 297 SGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (640)
|||||||++|||+|+.+|++++|||||++||+.++..+.+.|++++++++|||+++|++. .+.++||+|++|+ |++.+
T Consensus 141 S~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~-~~~~~ad~i~~l~-~~~~~ 218 (255)
T cd03236 141 SGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLA-VLDYLSDYIHCLY-GEPGA 218 (255)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEC-CCCCc
Confidence 999999999999999999999999999999999999999999999877899999999975 4667899999994 66665
Q ss_pred ec
Q 006571 377 FG 378 (640)
Q Consensus 377 ~G 378 (640)
.|
T Consensus 219 ~~ 220 (255)
T cd03236 219 YG 220 (255)
T ss_pred ce
Confidence 44
No 342
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=1.3e-35 Score=338.01 Aligned_cols=197 Identities=29% Similarity=0.372 Sum_probs=168.6
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhc
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (640)
..++++|++++| ++ ..|+++||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++
T Consensus 339 ~~l~~~~ls~~~--------~~-~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~--p~~G~I~~~-------- 399 (590)
T PRK13409 339 TLVEYPDLTKKL--------GD-FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLK--PDEGEVDPE-------- 399 (590)
T ss_pred eEEEEcceEEEE--------CC-EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEEe--------
Confidence 469999999988 22 25999999999999999999999999999999999653 568999986
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHH
Q 006571 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (640)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (640)
..++|++|+..+++.+||+||+.+.... ... ...+.++++.++|.+..++. +..|||||||||+||
T Consensus 400 -~~i~y~~Q~~~~~~~~tv~e~l~~~~~~-----~~~---~~~~~~~L~~l~l~~~~~~~-----~~~LSGGe~QRvaiA 465 (590)
T PRK13409 400 -LKISYKPQYIKPDYDGTVEDLLRSITDD-----LGS---SYYKSEIIKPLQLERLLDKN-----VKDLSGGELQRVAIA 465 (590)
T ss_pred -eeEEEecccccCCCCCcHHHHHHHHhhh-----cCh---HHHHHHHHHHCCCHHHHhCC-----cccCCHHHHHHHHHH
Confidence 1599999998888889999999875321 111 22467899999998766654 578999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecC
Q 006571 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (640)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (640)
|+|+.+|+||||||||+|||+.++..+.+.|++++++ |+|||++|||+. .+..+|||+++|+ |++...|+
T Consensus 466 raL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~-~~~~~aDrvivl~-~~~~~~g~ 536 (590)
T PRK13409 466 ACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIY-MIDYISDRLMVFE-GEPGKHGH 536 (590)
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEc-Ccceeeee
Confidence 9999999999999999999999999999999999864 899999999965 4678899999996 58877776
No 343
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-35 Score=341.38 Aligned_cols=203 Identities=29% Similarity=0.452 Sum_probs=169.7
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhc
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (640)
..|+++||++.| +++.+|+|+||+|++|+++||+||||||||||||+|+|... +.+|+|.+++.
T Consensus 311 ~~l~~~~l~~~y--------~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~~~~------ 374 (638)
T PRK10636 311 PLLKMEKVSAGY--------GDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELA--PVSGEIGLAKG------ 374 (638)
T ss_pred ceEEEEeeEEEe--------CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCC------
Confidence 369999999998 34679999999999999999999999999999999999653 56899999742
Q ss_pred cCcEEEEccCC--CCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCc-cccccccCccCCcCCHHHHHHH
Q 006571 228 KSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRV 304 (640)
Q Consensus 228 ~~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~LSGGqrqRv 304 (640)
.++||++|+. .+.+..|+.+++... .+ .....++.++++.+++.. ..++. +..|||||||||
T Consensus 375 -~~igy~~Q~~~~~l~~~~~~~~~~~~~----~~-----~~~~~~~~~~L~~~~l~~~~~~~~-----~~~LSgGekqRl 439 (638)
T PRK10636 375 -IKLGYFAQHQLEFLRADESPLQHLARL----AP-----QELEQKLRDYLGGFGFQGDKVTEE-----TRRFSGGEKARL 439 (638)
T ss_pred -EEEEEecCcchhhCCccchHHHHHHHh----Cc-----hhhHHHHHHHHHHcCCChhHhcCc-----hhhCCHHHHHHH
Confidence 2599999974 455667888876421 11 123456788999999963 45543 468999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEE-EecChHHH
Q 006571 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL-YFGKASEA 383 (640)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv-~~G~~~~~ 383 (640)
+||++|+.+|++|||||||+|||+.+...+.+.|+++ .| |||++|||+. .+..+||+|++|++|+++ +.|+.++.
T Consensus 440 ~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~g-tvi~vSHd~~-~~~~~~d~i~~l~~G~i~~~~g~~~~~ 515 (638)
T PRK10636 440 VLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--EG-ALVVVSHDRH-LLRSTTDDLYLVHDGKVEPFDGDLEDY 515 (638)
T ss_pred HHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-eEEEEeCCHH-HHHHhCCEEEEEECCEEEEcCCCHHHH
Confidence 9999999999999999999999999999999999987 34 9999999965 577899999999999997 88998876
Q ss_pred HH
Q 006571 384 MA 385 (640)
Q Consensus 384 ~~ 385 (640)
.+
T Consensus 516 ~~ 517 (638)
T PRK10636 516 QQ 517 (638)
T ss_pred HH
Confidence 43
No 344
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.4e-36 Score=361.93 Aligned_cols=335 Identities=22% Similarity=0.294 Sum_probs=229.6
Q ss_pred HhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccc-cceecchhc--hhhhHh---hhh---
Q 006571 25 AFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQ-LKLELDEVS--SGAALS---RAS--- 95 (640)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~g~~~~---~~~--- 95 (640)
-.|++....|||||+.+..-.+++..++..-.+.-+ +...++-|. .++|++... ...++. ..+
T Consensus 1000 ~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f--------~~~~a~RWla~Rle~ig~~~v~~~al~~vl~~~~~~ 1071 (1381)
T KOG0054|consen 1000 FSETLQGLSTIRAFGKEERFIQENDELIDENSRAFF--------LSISANRWLAVRLELLGNLVVLIAALFAVLLPSGLI 1071 (1381)
T ss_pred HHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCC
Confidence 356677779999999999999999888865444422 112223333 466655421 111111 111
Q ss_pred -hhhhhhhhccccCCCC---------cccc-----ccCCCCCCCCCccccccccCCCCCCCCCCCCCeeEEEEeEEEEEe
Q 006571 96 -SASLGLSFSFTGFTMP---------PDEI-----ADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVI 160 (640)
Q Consensus 96 -~~~~g~~~~~~~~~~~---------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vs~~~~ 160 (640)
....|+..+++. ++. ..++ +=+|...+.+++++ .....+...++..-+....|+|+|++.+|.
T Consensus 1072 ~~g~vGLslsyal-~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E-~p~~~~~~~pp~~WP~~G~I~f~~~~~RYr 1149 (1381)
T KOG0054|consen 1072 SPGLVGLSLSYAL-QLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSE-APLEIEESRPPPSWPSKGEIEFEDLSLRYR 1149 (1381)
T ss_pred CcchHHHHHHHHH-HHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCC-CCCCCcCCCCCCCCCCCCeEEEEEeEEEeC
Confidence 233444444432 111 1111 11133333333322 000000000111112234799999999993
Q ss_pred eccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hccCcEEEEcc
Q 006571 161 LKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQ 236 (640)
Q Consensus 161 ~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~i~yV~Q 236 (640)
.+...|||||||+|+|||.+||||..|||||||+++|- |+.++ .+|+|.+||.|+.+ ++|++++.+||
T Consensus 1150 ------p~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLF-Rl~e~-~~G~I~IDgvdI~~igL~dLRsrlsIIPQ 1221 (1381)
T KOG0054|consen 1150 ------PNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALF-RLVEP-AEGEILIDGVDISKIGLHDLRSRLSIIPQ 1221 (1381)
T ss_pred ------CCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHH-HhcCc-cCCeEEEcCeecccccHHHHHhcCeeeCC
Confidence 23468999999999999999999999999999999999 56654 58999999999974 78999999999
Q ss_pred CCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCE
Q 006571 237 DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSL 316 (640)
Q Consensus 237 ~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~i 316 (640)
||.+|.+ |||.||.-.... ..+.+.++-.+...++.++ .++...|+.|.+ ...++|-||||-+++||||+++.+|
T Consensus 1222 dPvLFsG-TvR~NLDPf~e~-sD~~IW~ALe~~~Lk~~v~--~~p~~Ld~~v~e-gG~N~SvGQRQLlCLARALLr~skI 1296 (1381)
T KOG0054|consen 1222 DPVLFSG-TVRFNLDPFDEY-SDDEIWEALERCQLKDVVS--SLPGGLDSEVSE-GGENFSVGQRQLLCLARALLRKSKI 1296 (1381)
T ss_pred CCceecC-ccccccCccccc-CHHHHHHHHHHhChHHHHh--hCCcCCCceecC-CCccCChHHHHHHHHHHHHhccCCE
Confidence 9999986 999999632110 0011111222223344444 345557777754 3467999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHH
Q 006571 317 LFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (640)
Q Consensus 317 LlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (640)
|+|||+|++.|+++-..|.+.||+-- +++|||.+.|++.+ + --+|||+||++|+++++|+|.++++
T Consensus 1297 LvLDEATAsVD~~TD~lIQ~tIR~~F-~dcTVltIAHRl~T-V-md~DrVlVld~G~v~EfdsP~~Ll~ 1362 (1381)
T KOG0054|consen 1297 LVLDEATASVDPETDALIQKTIREEF-KDCTVLTIAHRLNT-V-MDSDRVLVLDAGRVVEFDSPAELLS 1362 (1381)
T ss_pred EEEecccccCChHHHHHHHHHHHHHh-cCCeEEEEeeccch-h-hhcCeEEEeeCCeEeecCChHHHHh
Confidence 99999999999999999999999854 38999999999886 4 4589999999999999999999974
No 345
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=5.4e-35 Score=336.95 Aligned_cols=205 Identities=26% Similarity=0.453 Sum_probs=168.9
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhc
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (640)
..|+++||+++| +++++|+|+||+|++|++++|+|||||||||||++|+|.+. +.+|+|.+ |.++
T Consensus 318 ~~l~~~~l~~~~--------~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~-~~~~---- 382 (635)
T PRK11147 318 IVFEMENVNYQI--------DGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQ--ADSGRIHC-GTKL---- 382 (635)
T ss_pred ceEEEeeeEEEE--------CCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEE-CCCc----
Confidence 369999999998 34579999999999999999999999999999999999653 56899998 4332
Q ss_pred cCcEEEEccCC-CCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCccCCcCCHHHHHHHH
Q 006571 228 KSKIGFVTQDD-VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKRVC 305 (640)
Q Consensus 228 ~~~i~yV~Q~~-~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqrqRv~ 305 (640)
.|||++|+. .+++.+||.||+.++.... ... .....+.++++.+++. +..++. +..|||||||||+
T Consensus 383 --~i~y~~q~~~~l~~~~tv~e~l~~~~~~~---~~~--~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGekqRl~ 450 (635)
T PRK11147 383 --EVAYFDQHRAELDPEKTVMDNLAEGKQEV---MVN--GRPRHVLGYLQDFLFHPKRAMTP-----VKALSGGERNRLL 450 (635)
T ss_pred --EEEEEeCcccccCCCCCHHHHHHhhcccc---ccc--chHHHHHHHHHhcCCCHHHHhCh-----hhhCCHHHHHHHH
Confidence 599999985 5888999999998753211 011 1234577889999985 344543 4689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEc-CCeEE-EecChHHH
Q 006571 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG-KGSLL-YFGKASEA 383 (640)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~-~G~iv-~~G~~~~~ 383 (640)
||++|+.+|++|||||||+|||+.+...+.+.|+++ +.|||++|||.. .+..+||+|++|+ +|++. |.|+.++-
T Consensus 451 la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~-~~~~~~d~i~~l~~~g~i~~~~g~y~~y 526 (635)
T PRK11147 451 LARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDRQ-FVDNTVTECWIFEGNGKIGRYVGGYHDA 526 (635)
T ss_pred HHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCHH-HHHHhcCEEEEEeCCCeEEEccCCHHHH
Confidence 999999999999999999999999999999999876 459999999965 5778899999997 79985 46666653
No 346
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=4.8e-35 Score=275.95 Aligned_cols=144 Identities=33% Similarity=0.561 Sum_probs=130.4
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccC
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~ 229 (640)
++++|++++| +++++|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|. +
T Consensus 1 l~~~~l~~~~--------~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~~~-------~ 63 (144)
T cd03221 1 IELENLSKTY--------GGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELE--PDEGIVTWGST-------V 63 (144)
T ss_pred CEEEEEEEEE--------CCceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CCceEEEECCe-------E
Confidence 4789999988 23469999999999999999999999999999999999643 56899999985 4
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHH
Q 006571 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (640)
Q Consensus 230 ~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~a 309 (640)
.++|++| ||+||+||++||||
T Consensus 64 ~i~~~~~-----------------------------------------------------------lS~G~~~rv~lara 84 (144)
T cd03221 64 KIGYFEQ-----------------------------------------------------------LSGGEKMRLALAKL 84 (144)
T ss_pred EEEEEcc-----------------------------------------------------------CCHHHHHHHHHHHH
Confidence 6899998 99999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCe
Q 006571 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (640)
Q Consensus 310 L~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~ 373 (640)
|+.+|++++|||||+|||+.++..+.+.|+++ ++|+|+++|++. ++.+.||++++|++|+
T Consensus 85 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~---~~til~~th~~~-~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 85 LLENPNLLLLDEPTNHLDLESIEALEEALKEY---PGTVILVSHDRY-FLDQVATKIIELEDGK 144 (144)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEECCHH-HHHHhCCEEEEEeCCC
Confidence 99999999999999999999999999999876 479999999965 4667899999999985
No 347
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.1e-34 Score=286.23 Aligned_cols=222 Identities=22% Similarity=0.315 Sum_probs=190.6
Q ss_pred eEEEEeEEEEEeecc----------------ccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCc
Q 006571 149 YLKFTDVTYKVILKG----------------MTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTV 212 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~----------------~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~ 212 (640)
.|+++||++.|+... ........+|+||||++++||.++|+|+||||||||||+|+|.+. |+
T Consensus 3 ~I~~~~V~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~--Pt 80 (249)
T COG1134 3 VIKVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYK--PT 80 (249)
T ss_pred EEEeeceeEEEecchhhhhhHHHHHHHHhcCCCCcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccC--CC
Confidence 578889988876431 112234679999999999999999999999999999999999543 56
Q ss_pred ccEEEECCEeCChhccCcEEEEcc-CCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCc
Q 006571 213 GGSITYNDHPYSKSLKSKIGFVTQ-DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGS 291 (640)
Q Consensus 213 ~G~I~~~G~~~~~~~~~~i~yV~Q-~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~ 291 (640)
+|+|.++|+-. .+.. .-.+-|.+|.+||+.+-+.+. .+++++.+++++++++.-+|.+..|.++
T Consensus 81 ~G~v~v~G~v~---------~li~lg~Gf~pelTGreNi~l~~~~~---G~~~~ei~~~~~eIieFaELG~fi~~Pv--- 145 (249)
T COG1134 81 SGKVKVTGKVA---------PLIELGAGFDPELTGRENIYLRGLIL---GLTRKEIDEKVDEIIEFAELGDFIDQPV--- 145 (249)
T ss_pred CceEEEcceEe---------hhhhcccCCCcccchHHHHHHHHHHh---CccHHHHHHHHHHHHHHHHHHHHhhCch---
Confidence 99999999742 1111 223456799999999877653 4678899999999999889999888754
Q ss_pred cCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcC
Q 006571 292 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (640)
Q Consensus 292 ~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~ 371 (640)
+.+|-||+=|+++|.|...+|+|||+||..+-.|+.=+++-.+.++++.++++|||+++|++. .+.++||++++|++
T Consensus 146 --ktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~-~I~~~Cd~~i~l~~ 222 (249)
T COG1134 146 --KTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLG-AIKQYCDRAIWLEH 222 (249)
T ss_pred --hhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhcCeeEEEeC
Confidence 799999999999999999999999999999999999999999999999888899999999965 58899999999999
Q ss_pred CeEEEecChHHHHHHHHhc
Q 006571 372 GSLLYFGKASEAMAYFSSI 390 (640)
Q Consensus 372 G~iv~~G~~~~~~~~f~~~ 390 (640)
|++.+.|.+++++++|+..
T Consensus 223 G~i~~~G~~~~vi~~Y~~~ 241 (249)
T COG1134 223 GQIRMEGSPEEVIPAYEED 241 (249)
T ss_pred CEEEEcCCHHHHHHHHHHh
Confidence 9999999999999998764
No 348
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=8e-35 Score=361.99 Aligned_cols=209 Identities=22% Similarity=0.400 Sum_probs=171.8
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhcc
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~ 228 (640)
.++++|++|+|+ ..++++|+|+|++|++|++++|+||||||||||+++|+|... +.+|+|.++|
T Consensus 636 ~i~~~~~~~~~~------~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~--~~~G~i~~~g-------- 699 (1522)
T TIGR00957 636 SITVHNATFTWA------RDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD--KVEGHVHMKG-------- 699 (1522)
T ss_pred cEEEEEeEEEcC------CCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--cCCcEEEECC--------
Confidence 699999999983 123579999999999999999999999999999999999653 4689999987
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHH---HHHHcC-CCccccccccCccCCcCCHHHHHHH
Q 006571 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAID---VINELG-LERCQDTMIGGSFVRGVSGGERKRV 304 (640)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~---~l~~lg-L~~~~~t~vg~~~~~~LSGGqrqRv 304 (640)
+|+||+|++.+++ .||+|||.|+.. ..++.. +++.+ +.+.++ ++++.+|.+|.. ..+||||||||+
T Consensus 700 -~i~yv~Q~~~l~~-~Ti~eNI~~g~~------~~~~~~-~~~~~~~~l~~~l~~~~~g~~t~ig~~-g~~LSGGQkqRi 769 (1522)
T TIGR00957 700 -SVAYVPQQAWIQN-DSLRENILFGKA------LNEKYY-QQVLEACALLPDLEILPSGDRTEIGEK-GVNLSGGQKQRV 769 (1522)
T ss_pred -EEEEEcCCccccC-CcHHHHhhcCCc------cCHHHH-HHHHHHhCCHHHHHhcCCCCCceecCC-CCCCCHHHHHHH
Confidence 4999999999985 699999998632 122221 22222 122332 355667888765 567999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH--HHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHH
Q 006571 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI--AEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (640)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l--~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (640)
+|||||+.+|+|++||||||+||+.++..+.+.+.+. ..+++|+|++||++.. ...||+|++|++|++++.|++++
T Consensus 770 aLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~--l~~~D~ii~l~~G~i~~~g~~~~ 847 (1522)
T TIGR00957 770 SLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISY--LPQVDVIIVMSGGKISEMGSYQE 847 (1522)
T ss_pred HHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhh--hhhCCEEEEecCCeEEeeCCHHH
Confidence 9999999999999999999999999999999999753 2358999999999764 45699999999999999999999
Q ss_pred HHH
Q 006571 383 AMA 385 (640)
Q Consensus 383 ~~~ 385 (640)
+.+
T Consensus 848 l~~ 850 (1522)
T TIGR00957 848 LLQ 850 (1522)
T ss_pred HHh
Confidence 864
No 349
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.9e-35 Score=334.45 Aligned_cols=208 Identities=27% Similarity=0.427 Sum_probs=163.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhcc
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~ 228 (640)
+|+++||+++| +++.+|+||||+|++|+++||+||||||||||||+|+|... +++|+|.++|..
T Consensus 1 ~i~i~nls~~~--------g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~--pd~G~I~~~~~~------ 64 (638)
T PRK10636 1 MIVFSSLQIRR--------GVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEIS--ADGGSYTFPGNW------ 64 (638)
T ss_pred CEEEEEEEEEe--------CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEecCCC------
Confidence 37899999998 45679999999999999999999999999999999999543 568999998852
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHh-----------------------ccC-CCCccHHHHHHHHHHHHHHcCCC-cc
Q 006571 229 SKIGFVTQDDVLFPHLTVKETLTYAAL-----------------------LRL-PNTLTKQQKEKRAIDVINELGLE-RC 283 (640)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~Enl~~~~~-----------------------~~~-~~~~~~~~~~~~v~~~l~~lgL~-~~ 283 (640)
.++|++|++..+. .|+.+++.-... +.. .......+.+.++.++++.+|+. +.
T Consensus 65 -~i~~~~q~~~~~~-~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~ 142 (638)
T PRK10636 65 -QLAWVNQETPALP-QPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQ 142 (638)
T ss_pred -EEEEEecCCCCCC-CCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchh
Confidence 3899998754442 466555431100 000 00000012345688899999996 34
Q ss_pred ccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhcc
Q 006571 284 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKF 363 (640)
Q Consensus 284 ~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~ 363 (640)
.+.. +..|||||||||+||++|+.+|+||||||||++||+.+...+.+.|+++ +.|||+||||.. .+.+.|
T Consensus 143 ~~~~-----~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~tviivsHd~~-~l~~~~ 213 (638)
T PRK10636 143 LERP-----VSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QGTLILISHDRD-FLDPIV 213 (638)
T ss_pred hcCc-----hhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CCeEEEEeCCHH-HHHHhc
Confidence 5544 4689999999999999999999999999999999999999999998875 569999999965 477889
Q ss_pred CEEEEEcCCeEE-EecChHHH
Q 006571 364 DKLILLGKGSLL-YFGKASEA 383 (640)
Q Consensus 364 D~i~vL~~G~iv-~~G~~~~~ 383 (640)
|+|++|++|+++ |.|+.+..
T Consensus 214 d~i~~L~~G~i~~~~g~~~~~ 234 (638)
T PRK10636 214 DKIIHIEQQSLFEYTGNYSSF 234 (638)
T ss_pred CEEEEEeCCEEEEecCCHHHH
Confidence 999999999996 67876543
No 350
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=2.1e-34 Score=333.76 Aligned_cols=207 Identities=20% Similarity=0.366 Sum_probs=166.2
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhc
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (640)
..|+++||++.|. +.+.+|+|+||+|++|++++|+||||||||||||+|+|.+. +.+|+|.+++.
T Consensus 507 ~~L~~~~ls~~y~-------~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~--p~~G~I~~~~~------ 571 (718)
T PLN03073 507 PIISFSDASFGYP-------GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ--PSSGTVFRSAK------ 571 (718)
T ss_pred ceEEEEeeEEEeC-------CCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCceEEECCc------
Confidence 4699999999982 23469999999999999999999999999999999999653 56899998752
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCc-cccccccCccCCcCCHHHHHHHHH
Q 006571 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRVCI 306 (640)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~LSGGqrqRv~I 306 (640)
.+|||++|++ ++.+++.+|..+......+. .. .+++.++++.+||.+ ..+. .+..|||||||||+|
T Consensus 572 -~~igyv~Q~~--~~~l~~~~~~~~~~~~~~~~-~~----~~~i~~~L~~~gl~~~~~~~-----~~~~LSgGqkqRvaL 638 (718)
T PLN03073 572 -VRMAVFSQHH--VDGLDLSSNPLLYMMRCFPG-VP----EQKLRAHLGSFGVTGNLALQ-----PMYTLSGGQKSRVAF 638 (718)
T ss_pred -eeEEEEeccc--cccCCcchhHHHHHHHhcCC-CC----HHHHHHHHHHCCCChHHhcC-----CccccCHHHHHHHHH
Confidence 4699999985 33456766654322111111 11 345778999999963 3443 457899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEE-EecChHHHHH
Q 006571 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL-YFGKASEAMA 385 (640)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv-~~G~~~~~~~ 385 (640)
||+|+.+|++|||||||+|||+.+...+++.|++. .| |||++||++. .+...||++++|++|+++ +.|++++...
T Consensus 639 AraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~g-tvIivSHd~~-~i~~~~drv~~l~~G~i~~~~g~~~~~~~ 714 (718)
T PLN03073 639 AKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--QG-GVLMVSHDEH-LISGSVDELWVVSEGKVTPFHGTFHDYKK 714 (718)
T ss_pred HHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-EEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCCHHHHHH
Confidence 99999999999999999999999999998888764 34 9999999965 477889999999999998 7888876544
Q ss_pred H
Q 006571 386 Y 386 (640)
Q Consensus 386 ~ 386 (640)
+
T Consensus 715 ~ 715 (718)
T PLN03073 715 T 715 (718)
T ss_pred H
Confidence 3
No 351
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=5.6e-35 Score=283.56 Aligned_cols=203 Identities=28% Similarity=0.416 Sum_probs=168.3
Q ss_pred ccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChh----ccCcEEEEccCCC--CC
Q 006571 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS----LKSKIGFVTQDDV--LF 241 (640)
Q Consensus 168 ~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~----~~~~i~yV~Q~~~--l~ 241 (640)
.++++|+++|++|..|+++-|+|.||||||||+|+|+|.+. +++|+|.+||.++++. ....++-|+|||. .+
T Consensus 17 ~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~--~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~ 94 (263)
T COG1101 17 LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLK--PTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTA 94 (263)
T ss_pred hHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccc--cCCceEEECceecccCCHHHHhhHHHHHhcchhhCCc
Confidence 46789999999999999999999999999999999999764 5699999999998642 2245788999984 69
Q ss_pred CCCCHHHHHHHHHhccCCCCccH---HHHHHHHHHHHHHc--CCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCE
Q 006571 242 PHLTVKETLTYAALLRLPNTLTK---QQKEKRAIDVINEL--GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSL 316 (640)
Q Consensus 242 ~~lTV~Enl~~~~~~~~~~~~~~---~~~~~~v~~~l~~l--gL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~i 316 (640)
+.||+.||+.++...-..+.++. ..+.+...+-++.+ ||++..++.+| -|||||||-+++++|.++.|+|
T Consensus 95 ~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~ig-----lLSGGQRQalsL~MAtl~~pki 169 (263)
T COG1101 95 PELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIG-----LLSGGQRQALSLLMATLHPPKI 169 (263)
T ss_pred ccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhh-----hccchHHHHHHHHHHhcCCCcE
Confidence 99999999998764311122222 22333444555554 66777777665 6999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEec
Q 006571 317 LFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (640)
Q Consensus 317 LlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (640)
|+|||-|++|||.++..|++.-.++.++ +.|.+|+||.+. +...+-+|.++|++|+||.+-
T Consensus 170 LLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~-~Al~yG~RlImLh~G~IvlDv 231 (263)
T COG1101 170 LLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNME-DALDYGNRLIMLHSGKIVLDV 231 (263)
T ss_pred EEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHH-HHHhhCCeEEEEeCCeEEEEc
Confidence 9999999999999999999999998754 779999999975 467899999999999999764
No 352
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=5.7e-35 Score=268.75 Aligned_cols=192 Identities=31% Similarity=0.500 Sum_probs=166.9
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CcccEEEECCEeCC--h
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYS--K 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~-~~~G~I~~~G~~~~--~ 225 (640)
++.++||+.+. ++.-+|-|+|++|.+||++-||||||||||||+..+.|.+... ..+|++++|++++. +
T Consensus 2 ~l~l~nvsl~l--------~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lP 73 (213)
T COG4136 2 MLCLKNVSLRL--------PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLP 73 (213)
T ss_pred ceeeeeeeecC--------CCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccc
Confidence 47789998764 4667999999999999999999999999999999999976432 46899999999886 3
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHH
Q 006571 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (640)
Q Consensus 226 ~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (640)
..+|++|+.+||+.+||+++|.+||.|+ +|.++.-..++..++..+++.||....+. .+.+||||||-||+
T Consensus 74 a~qRq~GiLFQD~lLFphlsVg~Nl~fA----lp~~~KG~aRr~~a~aAL~~~gL~g~f~~-----dP~tlSGGQrARva 144 (213)
T COG4136 74 AAQRQIGILFQDALLFPHLSVGQNLLFA----LPATLKGNARRNAANAALERSGLDGAFHQ-----DPATLSGGQRARVA 144 (213)
T ss_pred hhhhheeeeecccccccccccccceEEe----cCcccccHHHHhhHHHHHHHhccchhhhc-----ChhhcCcchHHHHH
Confidence 5688999999999999999999999997 45556666778889999999999877764 35789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEeCCCCc
Q 006571 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA-EAGKTVVTTIHQPSS 357 (640)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~-~~g~TvI~~tH~~~~ 357 (640)
+-|+|+..|+.++||||+|.||..-+.++.++.-.-. ..|..+|.+|||..+
T Consensus 145 L~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~D 197 (213)
T COG4136 145 LLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQD 197 (213)
T ss_pred HHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEeccccc
Confidence 9999999999999999999999999999998876544 459999999999643
No 353
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=1.6e-34 Score=281.04 Aligned_cols=157 Identities=27% Similarity=0.388 Sum_probs=132.4
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHH
Q 006571 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248 (640)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~E 248 (640)
.+++|+|+||++++|++++|+||||||||||||+|.+ .+|+|.++|... ...++.++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~------~~G~v~~~~~~~-~~~~~~~~~~~q------------ 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY------ASGKARLISFLP-KFSRNKLIFIDQ------------ 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh------cCCcEEECCccc-ccccccEEEEhH------------
Confidence 5679999999999999999999999999999999963 379999988732 222445888887
Q ss_pred HHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCcc-ccccccCccCCcCCHHHHHHHHHHHHHhhC--CCEEEEeCCCCC
Q 006571 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNEIIIN--PSLLFLDEPTSG 325 (640)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~--P~iLlLDEPTsg 325 (640)
.++++.++|... .+. .++.||||||||++|||+|+.+ |++|||||||++
T Consensus 68 -----------------------~~~l~~~~L~~~~~~~-----~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~ 119 (176)
T cd03238 68 -----------------------LQFLIDVGLGYLTLGQ-----KLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTG 119 (176)
T ss_pred -----------------------HHHHHHcCCCccccCC-----CcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCccc
Confidence 135667787642 343 4578999999999999999999 999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeE
Q 006571 326 LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (640)
Q Consensus 326 LD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~i 374 (640)
||+.++..+.+.|+++++.|+|||++||++.. + +.||++++|++|+.
T Consensus 120 LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~-~-~~~d~i~~l~~g~~ 166 (176)
T cd03238 120 LHQQDINQLLEVIKGLIDLGNTVILIEHNLDV-L-SSADWIIDFGPGSG 166 (176)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-H-HhCCEEEEECCCCC
Confidence 99999999999999998779999999999753 4 67999999976543
No 354
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1.7e-34 Score=281.08 Aligned_cols=152 Identities=27% Similarity=0.425 Sum_probs=132.6
Q ss_pred EeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEE
Q 006571 153 TDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIG 232 (640)
Q Consensus 153 ~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~ 232 (640)
.||+++| +++.+++++ +++++||+++|+||||||||||+|+|+|.+. +.+|+|.++|.+ ++
T Consensus 4 ~~l~~~~--------~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~--------i~ 64 (177)
T cd03222 4 PDCVKRY--------GVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLI--PNGDNDEWDGIT--------PV 64 (177)
T ss_pred CCeEEEE--------CCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCCcEEEECCEE--------EE
Confidence 5788887 456789985 9999999999999999999999999999653 568999999864 78
Q ss_pred EEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhh
Q 006571 233 FVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIII 312 (640)
Q Consensus 233 yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~ 312 (640)
|++|+.. ||||||||++|||+|+.
T Consensus 65 ~~~q~~~--------------------------------------------------------LSgGq~qrv~laral~~ 88 (177)
T cd03222 65 YKPQYID--------------------------------------------------------LSGGELQRVAIAAALLR 88 (177)
T ss_pred EEcccCC--------------------------------------------------------CCHHHHHHHHHHHHHhc
Confidence 8888532 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCC-CEEEEEeCCCCcHHHhccCEEEEEcCCeEEEe--cCh
Q 006571 313 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG-KTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF--GKA 380 (640)
Q Consensus 313 ~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g-~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~--G~~ 380 (640)
+|++++|||||++||+.++..+.+.++++++++ +|||+++|++. .+.++||++++|+++-.++. |.|
T Consensus 89 ~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~~~~~~~~~~~~ 158 (177)
T cd03222 89 NATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLA-VLDYLSDRIHVFEGEPGVYGIASQP 158 (177)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHH-HHHHhCCEEEEEcCCCccceeccCC
Confidence 999999999999999999999999999997765 89999999965 46678999999998766544 544
No 355
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=5.4e-34 Score=328.61 Aligned_cols=207 Identities=24% Similarity=0.382 Sum_probs=161.8
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhcc
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~ 228 (640)
+|+++||+++| +++++|+||||+|++|++++|+||||||||||||+|+|... +++|+|.++|..
T Consensus 3 ~l~i~~ls~~~--------~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~--p~~G~I~~~~~~------ 66 (635)
T PRK11147 3 LISIHGAWLSF--------SDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVL--LDDGRIIYEQDL------ 66 (635)
T ss_pred EEEEeeEEEEe--------CCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCeEEEeCCCC------
Confidence 58999999998 34679999999999999999999999999999999999653 568999998732
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHh-----------c--cCCC------------------CccHHHHHHHHHHHHHH
Q 006571 229 SKIGFVTQDDVLFPHLTVKETLTYAAL-----------L--RLPN------------------TLTKQQKEKRAIDVINE 277 (640)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~Enl~~~~~-----------~--~~~~------------------~~~~~~~~~~v~~~l~~ 277 (640)
.++|++|++......+|.+++..+.. + .... .........++.++++.
T Consensus 67 -~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 145 (635)
T PRK11147 67 -IVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQ 145 (635)
T ss_pred -EEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHh
Confidence 26788876543333466665431100 0 0000 00001124567889999
Q ss_pred cCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCc
Q 006571 278 LGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSS 357 (640)
Q Consensus 278 lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~ 357 (640)
+||.. +. .+..|||||||||+|||+|+.+|+||||||||++||+.+...+.+.|+++ +.|||+|||++.
T Consensus 146 lgl~~--~~-----~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~---~~tvlivsHd~~- 214 (635)
T PRK11147 146 LGLDP--DA-----ALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF---QGSIIFISHDRS- 214 (635)
T ss_pred CCCCC--CC-----chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC---CCEEEEEeCCHH-
Confidence 99963 33 45789999999999999999999999999999999999999999999887 359999999965
Q ss_pred HHHhccCEEEEEcCCeEE-EecChHHH
Q 006571 358 RLFHKFDKLILLGKGSLL-YFGKASEA 383 (640)
Q Consensus 358 ~i~~~~D~i~vL~~G~iv-~~G~~~~~ 383 (640)
.+...||+|++|++|+++ +.|+.++.
T Consensus 215 ~l~~~~d~i~~L~~G~i~~~~g~~~~~ 241 (635)
T PRK11147 215 FIRNMATRIVDLDRGKLVSYPGNYDQY 241 (635)
T ss_pred HHHHhcCeEEEEECCEEEEecCCHHHH
Confidence 477889999999999997 56887653
No 356
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=1.5e-34 Score=342.98 Aligned_cols=224 Identities=25% Similarity=0.436 Sum_probs=201.5
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (640)
..+..+|+++.|.. .++ +++++|+.|++||+.+++|||||||||++|+|.|.. ++++|+++++|.++..
T Consensus 563 ~~~~~~~L~k~y~~------~~~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~--~~t~G~a~i~g~~i~~~~ 633 (885)
T KOG0059|consen 563 SALVLNNLSKVYGG------KDG-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGET--KPTSGEALIKGHDITVST 633 (885)
T ss_pred ceEEEcceeeeecc------hhh-hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCc--cCCcceEEEecCcccccc
Confidence 46889999998832 122 999999999999999999999999999999999954 3569999999998853
Q ss_pred ---hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHH
Q 006571 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (640)
Q Consensus 226 ---~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (640)
..++.+||+||+|.+++.+|.+|++.+.++++ +++..+.++.++.+++.++|.++.|+.+ +.+|||+||
T Consensus 634 ~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlr---G~~~~di~~~v~~ll~~~~L~~~~~~~~-----~~ySgG~kR 705 (885)
T KOG0059|consen 634 DFQQVRKQLGYCPQFDALWEELTGREHLEFYARLR---GLPRSDIGSAIEKLLRLVGLGPYANKQV-----RTYSGGNKR 705 (885)
T ss_pred chhhhhhhcccCCchhhhhhhccHHHHHHHHHHHc---CCChhHHHHHHHHHHHHcCChhhhccch-----hhCCCcchh
Confidence 26788999999999999999999999999887 4566667777999999999999998865 589999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHH
Q 006571 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (640)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (640)
|+++|.||+.+|++++|||||+|+||.+++.+++.++++.++|+.||++||.. ++...+|||+.+|.+|++.-.|++++
T Consensus 706 kLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsM-eE~EaLCtR~aImv~G~l~ciGs~q~ 784 (885)
T KOG0059|consen 706 RLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSM-EEAEALCTRTAIMVIGQLRCIGSPQE 784 (885)
T ss_pred hHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHHhhhhheeecCeeEEecChHH
Confidence 99999999999999999999999999999999999999998888999999995 57889999999999999999999999
Q ss_pred HHHHHHh
Q 006571 383 AMAYFSS 389 (640)
Q Consensus 383 ~~~~f~~ 389 (640)
+...|..
T Consensus 785 LKsrfG~ 791 (885)
T KOG0059|consen 785 LKSRYGS 791 (885)
T ss_pred HHhhcCC
Confidence 9987753
No 357
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=5.8e-34 Score=353.45 Aligned_cols=192 Identities=27% Similarity=0.453 Sum_probs=159.2
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHH
Q 006571 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKET 249 (640)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~En 249 (640)
+++|+|+|++|++|++++|+|||||||||||++|+|... +.+|+|.++| .|+||+|++.+++. ||+||
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~--~~~G~i~~~g---------~iayv~Q~~~l~~~-Ti~eN 506 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELE--PSEGKIKHSG---------RISFSPQTSWIMPG-TIKDN 506 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECC---------EEEEEeCCCccCCc-cHHHH
Confidence 469999999999999999999999999999999999653 5689999998 39999999999975 99999
Q ss_pred HHHHHhccCCCCccHHHHHH-----HHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 006571 250 LTYAALLRLPNTLTKQQKEK-----RAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 324 (640)
Q Consensus 250 l~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTs 324 (640)
|.|+... ..+..++ .+++.++.+ ++..+|.+|.. ...|||||||||+||||++.+|+|+||||||+
T Consensus 507 I~~g~~~------~~~~~~~~~~~~~L~~~l~~l--~~g~~t~vg~~-g~~LSgGqkqRi~lARAl~~~~~illLDep~s 577 (1490)
T TIGR01271 507 IIFGLSY------DEYRYTSVIKACQLEEDIALF--PEKDKTVLGEG-GITLSGGQRARISLARAVYKDADLYLLDSPFT 577 (1490)
T ss_pred HHhcccc------chHHHHHHHHHHhHHHHHHhc--cccccccccCc-CCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 9987421 1111111 122333333 45557778765 56799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHH-HHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHH
Q 006571 325 GLDSTTALRIVQM-LQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (640)
Q Consensus 325 gLD~~s~~~i~~~-L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (640)
|||+.++..+.+. ++++. +|+|+|++||++.. ...||+|++|++|++++.|+++++..
T Consensus 578 aLD~~~~~~i~~~~l~~~~-~~~tvilvtH~~~~--~~~ad~ii~l~~g~i~~~g~~~~l~~ 636 (1490)
T TIGR01271 578 HLDVVTEKEIFESCLCKLM-SNKTRILVTSKLEH--LKKADKILLLHEGVCYFYGTFSELQA 636 (1490)
T ss_pred cCCHHHHHHHHHHHHHHHh-cCCeEEEEeCChHH--HHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999985 66665 48999999999764 35699999999999999999998863
No 358
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=4.1e-34 Score=270.76 Aligned_cols=226 Identities=21% Similarity=0.452 Sum_probs=190.1
Q ss_pred eEEEEeEEEEEeecc-ccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 006571 149 YLKFTDVTYKVILKG-MTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~-~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (640)
.++++|+++.+.... .-.+....+++.|||+++.|+.+||+|.||||||||.|+|+|... |++|+|.+||+++.-
T Consensus 4 LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~--PTsG~il~n~~~L~~~D 81 (267)
T COG4167 4 LLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE--PTSGEILINDHPLHFGD 81 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccC--CCCceEEECCccccccc
Confidence 478888887763221 112234568999999999999999999999999999999999763 569999999999741
Q ss_pred -hcc-CcEEEEccCCC--CCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCC-CccccccccCccCCcCCHHH
Q 006571 226 -SLK-SKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-ERCQDTMIGGSFVRGVSGGE 300 (640)
Q Consensus 226 -~~~-~~i~yV~Q~~~--l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-~~~~~t~vg~~~~~~LSGGq 300 (640)
..| ++|-++||||. +.|.+.+..-|....++ ..++..+++.+++.+-++.+|| ++.++ -++.-||-||
T Consensus 82 y~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l--~T~~~~~~R~~~i~~TL~~VGL~Pdhan-----~~~~~la~~Q 154 (267)
T COG4167 82 YSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRL--NTDLEPEQRRKQIFETLRMVGLLPDHAN-----YYPHMLAPGQ 154 (267)
T ss_pred hHhhhhheeeeecCCccccChhhhhhhHhcchhhh--cccCChHHHHHHHHHHHHHhccCccccc-----cchhhcCchh
Confidence 233 67999999974 67888888888776554 3457788899999999999998 44444 3567899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecC
Q 006571 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (640)
Q Consensus 301 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (640)
||||++||||+.+|+|+|.||...+||...+.++++++-++.++ |.+-|.++.++. .+..++|+|+||++|++++.|+
T Consensus 155 KQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG-~iKHi~D~viVM~EG~vvE~G~ 233 (267)
T COG4167 155 KQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIG-MIKHISDQVLVMHEGEVVERGS 233 (267)
T ss_pred HHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhh-HhhhhcccEEEEecCceeecCC
Confidence 99999999999999999999999999999999999999999864 999999999865 4788999999999999999999
Q ss_pred hHHHH
Q 006571 380 ASEAM 384 (640)
Q Consensus 380 ~~~~~ 384 (640)
+.+++
T Consensus 234 t~~v~ 238 (267)
T COG4167 234 TADVL 238 (267)
T ss_pred hhhhh
Confidence 99885
No 359
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.8e-33 Score=268.42 Aligned_cols=152 Identities=37% Similarity=0.729 Sum_probs=135.8
Q ss_pred EEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hc
Q 006571 152 FTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SL 227 (640)
Q Consensus 152 ~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~~ 227 (640)
++|++++| .++.+|+++|++|++|++++|+||||||||||+++|+|.+. +.+|+|+++|.++.. ..
T Consensus 2 ~~~~~~~~--------~~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~--~~~G~i~~~~~~~~~~~~~~~ 71 (157)
T cd00267 2 IENLSFRY--------GGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK--PTSGEILIDGKDIAKLPLEEL 71 (157)
T ss_pred eEEEEEEe--------CCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEEcccCCHHHH
Confidence 67899987 23479999999999999999999999999999999999653 468999999987643 34
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHH
Q 006571 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (640)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (640)
++.++|++| |||||+||++||
T Consensus 72 ~~~i~~~~q-----------------------------------------------------------lS~G~~~r~~l~ 92 (157)
T cd00267 72 RRRIGYVPQ-----------------------------------------------------------LSGGQRQRVALA 92 (157)
T ss_pred HhceEEEee-----------------------------------------------------------CCHHHHHHHHHH
Confidence 567899988 999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCe
Q 006571 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (640)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~ 373 (640)
++++.+|++++|||||+|||..++..+.+.|+++.+.++|+|+++|++. .+...||++++|++|+
T Consensus 93 ~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 93 RALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPE-LAELAADRVIVLKDGK 157 (157)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeCcC
Confidence 9999999999999999999999999999999998776799999999965 4667789999999875
No 360
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=8.3e-33 Score=329.87 Aligned_cols=211 Identities=23% Similarity=0.405 Sum_probs=175.6
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhc
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (640)
..++++|.++++.. ....+.|+||||+|++|+++||+||-|||||+||.+|.|.+. ..+|+|.++|.
T Consensus 517 ~~i~i~~~sfsW~~-----~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~--~~sG~v~v~gs------ 583 (1381)
T KOG0054|consen 517 NAIEIKNGSFSWDS-----ESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMP--KLSGSVAVNGS------ 583 (1381)
T ss_pred ceEEEeeeeEecCC-----CCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcc--cccceEEEcCe------
Confidence 36999999999742 234459999999999999999999999999999999999775 56899999986
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHH---HHc-CCCccccccccCccCCcCCHHHHHH
Q 006571 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVI---NEL-GLERCQDTMIGGSFVRGVSGGERKR 303 (640)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l---~~l-gL~~~~~t~vg~~~~~~LSGGqrqR 303 (640)
++||+|++.++.. ||||||.|+... ++++.+++-+.+ +++ -|+++-.|.||++++ +||||||||
T Consensus 584 ---iaYv~Q~pWI~ng-TvreNILFG~~~-------d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGi-nLSGGQKqR 651 (1381)
T KOG0054|consen 584 ---VAYVPQQPWIQNG-TVRENILFGSPY-------DEERYDKVIKACALKKDLEILPFGDLTEIGERGI-NLSGGQKQR 651 (1381)
T ss_pred ---EEEeccccHhhCC-cHHHhhhcCccc-------cHHHHHHHHHHccCHhHHhhcCCCCcceecCCcc-CCcHhHHHH
Confidence 9999999999965 999999998432 223333333322 222 245677888997765 599999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHH
Q 006571 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (640)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (640)
+++|||+.+|++|++||.|.|++|+....+|.+..-+..-++||+|++||+.. ....||+|++|++|+|++.|+++|+
T Consensus 652 IsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~--~L~~ad~Iivl~~G~I~~~Gty~el 729 (1381)
T KOG0054|consen 652 ISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQ--FLPHADQIIVLKDGKIVESGTYEEL 729 (1381)
T ss_pred HHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchh--hhhhCCEEEEecCCeEecccCHHHH
Confidence 99999999999999999999999999999988766544445899999999864 5688999999999999999999999
Q ss_pred HH
Q 006571 384 MA 385 (640)
Q Consensus 384 ~~ 385 (640)
.+
T Consensus 730 ~~ 731 (1381)
T KOG0054|consen 730 LK 731 (1381)
T ss_pred Hh
Confidence 83
No 361
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=3.3e-33 Score=318.18 Aligned_cols=189 Identities=28% Similarity=0.388 Sum_probs=155.5
Q ss_pred eEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEE-----------ECCEe
Q 006571 154 DVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT-----------YNDHP 222 (640)
Q Consensus 154 ~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~-----------~~G~~ 222 (640)
+++++|. ++..+|++++ .+++|++++|+||||||||||+|+|+|.+. +..|+|. ++|.+
T Consensus 78 ~~~~~yg-------~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~--p~~G~i~~~~~~~~~~~~~~G~~ 147 (590)
T PRK13409 78 EPVHRYG-------VNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELI--PNLGDYEEEPSWDEVLKRFRGTE 147 (590)
T ss_pred CceEEec-------CCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCcc--CCCccccCCCcHHHHHHHhCChH
Confidence 3677771 2346999999 999999999999999999999999999653 4589997 99988
Q ss_pred CChh------ccCcEEEEccC----CCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCcc
Q 006571 223 YSKS------LKSKIGFVTQD----DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSF 292 (640)
Q Consensus 223 ~~~~------~~~~i~yV~Q~----~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~ 292 (640)
+... .+.++++++|. +.++. .||+|++.+. +..++++++++.++|.+..|+.
T Consensus 148 l~~~~~~~~~~~~~~~~~~q~~~~~p~~~~-~tv~e~l~~~------------~~~~~~~~~l~~l~l~~~~~~~----- 209 (590)
T PRK13409 148 LQNYFKKLYNGEIKVVHKPQYVDLIPKVFK-GKVRELLKKV------------DERGKLDEVVERLGLENILDRD----- 209 (590)
T ss_pred HHHHHHHHhccCcceeecccchhhhhhhhc-chHHHHHHhh------------hHHHHHHHHHHHcCCchhhcCC-----
Confidence 7431 12345666664 44443 3999998631 1234678899999998776664
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCC
Q 006571 293 VRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKG 372 (640)
Q Consensus 293 ~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G 372 (640)
+.+|||||||||+||++|+.+|++|||||||++||+.++..+.+.|+++++ |+|||+++|++. .+..++|+|++|+++
T Consensus 210 ~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~-~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 210 ISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDLA-VLDYLADNVHIAYGE 287 (590)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 468999999999999999999999999999999999999999999999988 999999999975 577889999999873
No 362
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=1.1e-32 Score=342.50 Aligned_cols=199 Identities=27% Similarity=0.374 Sum_probs=155.4
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHH
Q 006571 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248 (640)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~E 248 (640)
++++|+|+|++|++|++++|+|||||||||||++|+|.+. +.+|+|.++ ++||||+|++.+++ .||+|
T Consensus 672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~--~~~G~i~~~---------~~i~yv~Q~~~l~~-~Tv~e 739 (1560)
T PTZ00243 672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFE--ISEGRVWAE---------RSIAYVPQQAWIMN-ATVRG 739 (1560)
T ss_pred CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEEC---------CeEEEEeCCCccCC-CcHHH
Confidence 4579999999999999999999999999999999999653 458999863 46999999999885 69999
Q ss_pred HHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 006571 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 328 (640)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~ 328 (640)
||.|+.... .....+..+...+++.++.+ +++.++.+|. ....|||||||||+|||||+.+|+|+||||||++||+
T Consensus 740 nI~~~~~~~-~~~~~~~~~~~~l~~~l~~l--~~g~~t~i~~-~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~ 815 (1560)
T PTZ00243 740 NILFFDEED-AARLADAVRVSQLEADLAQL--GGGLETEIGE-KGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDA 815 (1560)
T ss_pred HHHcCChhh-HHHHHHHHHHhhhHHHHHHh--hccchHHhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCH
Confidence 999853110 00000000111233344444 3344566654 3578999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHH
Q 006571 329 TTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (640)
Q Consensus 329 ~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (640)
.++..+++.+.....+|+|+|++||++.. ...||+|++|++|++++.|+++++.+
T Consensus 816 ~~~~~i~~~~~~~~~~~~TvIlvTH~~~~--~~~ad~ii~l~~G~i~~~G~~~~l~~ 870 (1560)
T PTZ00243 816 HVGERVVEECFLGALAGKTRVLATHQVHV--VPRADYVVALGDGRVEFSGSSADFMR 870 (1560)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEEeCCHHH--HHhCCEEEEEECCEEEEecCHHHHHh
Confidence 99999887543222358999999999753 46799999999999999999998753
No 363
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.8e-33 Score=261.11 Aligned_cols=214 Identities=29% Similarity=0.458 Sum_probs=170.5
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEe---CC-
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP---YS- 224 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~---~~- 224 (640)
.++++++++.| +...-.+||||++.|||+++|+|.|||||||||++|++++. ++.|+|.|.-.+ ..
T Consensus 6 LL~V~~lsk~Y--------g~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~--p~~G~v~Y~~r~~~~~dl 75 (258)
T COG4107 6 LLSVSGLSKLY--------GPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLT--PDAGTVTYRMRDGQPRDL 75 (258)
T ss_pred ceeehhhhhhh--------CCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccC--CCCCeEEEEcCCCCchhH
Confidence 58999999988 44567899999999999999999999999999999999885 568999996533 21
Q ss_pred ----h-----hccCcEEEEccCCC--CC----CCCCHHHHHHH-HHhccCCCCccHHHHHHHHHHHHHHcCCCccccccc
Q 006571 225 ----K-----SLKSKIGFVTQDDV--LF----PHLTVKETLTY-AALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMI 288 (640)
Q Consensus 225 ----~-----~~~~~i~yV~Q~~~--l~----~~lTV~Enl~~-~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~v 288 (640)
+ -.|-..|+|.|+|. +- ..-.|.|-+.- +++ .....++.+.++++++.++... +
T Consensus 76 ~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~R-------HYG~iR~~a~~WL~~VEI~~~R---i 145 (258)
T COG4107 76 YTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGAR-------HYGNIRAEAQDWLEEVEIDLDR---I 145 (258)
T ss_pred hhhchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhh-------hhhhHHHHHHHHHHhcccCccc---c
Confidence 1 13456899999874 22 12233443331 111 1123456678899998876432 2
Q ss_pred cCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEE
Q 006571 289 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLI 367 (640)
Q Consensus 289 g~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~ 367 (640)
+..++.+|||++||+.|||.|++.|+++|+||||.|||..-+..++++++.+..+ |..+|++|||+.- +.-++||.+
T Consensus 146 -DD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~V-arLla~rlm 223 (258)
T COG4107 146 -DDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAV-ARLLADRLM 223 (258)
T ss_pred -cCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHH-HHHhhhcce
Confidence 3457899999999999999999999999999999999999999999999999865 9999999999753 445689999
Q ss_pred EEcCCeEEEecChHHHH
Q 006571 368 LLGKGSLLYFGKASEAM 384 (640)
Q Consensus 368 vL~~G~iv~~G~~~~~~ 384 (640)
+|++|++++.|-.+.++
T Consensus 224 vmk~g~vve~GLTDrvL 240 (258)
T COG4107 224 VMKQGQVVESGLTDRVL 240 (258)
T ss_pred eecCCCEeccccccccc
Confidence 99999999999888775
No 364
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.4e-33 Score=263.54 Aligned_cols=187 Identities=25% Similarity=0.431 Sum_probs=162.4
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---h
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---S 226 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---~ 226 (640)
++.+|++.. ++++.++.++||++.+||++-|.|||||||||||++|+|... +.+|+|.++|.++.. .
T Consensus 3 L~a~~L~~~--------R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~--p~~G~v~~~~~~i~~~~~~ 72 (209)
T COG4133 3 LEAENLSCE--------RGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLR--PDAGEVYWQGEPIQNVRES 72 (209)
T ss_pred chhhhhhhc--------cCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccC--CCCCeEEecCCCCccchhh
Confidence 556677654 367789999999999999999999999999999999999764 568999999998863 2
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHH
Q 006571 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (640)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (640)
+++.+-|+-.++-+=+.+||.|||.|....... ...+.+.+.++.+||....|.++ ..||-||||||+|
T Consensus 73 ~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~------~~~~~i~~Al~~vgL~g~~dlp~-----~~LSAGQqRRvAl 141 (209)
T COG4133 73 YHQALLYLGHQPGIKTELTALENLHFWQRFHGS------GNAATIWEALAQVGLAGLEDLPV-----GQLSAGQQRRVAL 141 (209)
T ss_pred HHHHHHHhhccccccchhhHHHHHHHHHHHhCC------CchhhHHHHHHHcCcccccccch-----hhcchhHHHHHHH
Confidence 456788999899998999999999998765321 12345788999999998888765 5899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCc
Q 006571 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSS 357 (640)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~ 357 (640)
||-++..++++|||||+++||......+-..+..-+.+|-.||.+||||..
T Consensus 142 ArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~ 192 (209)
T COG4133 142 ARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLP 192 (209)
T ss_pred HHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccC
Confidence 999999999999999999999999999999999888889999999999875
No 365
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=1.9e-32 Score=305.69 Aligned_cols=208 Identities=29% Similarity=0.460 Sum_probs=169.0
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhcc
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~ 228 (640)
.|+++|++++| +++++|+|+|+++.+|+.+||||+||||||||||+|+|... +.+|+|...+-
T Consensus 3 ~i~~~~ls~~~--------g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~--~~~G~i~~~~~------- 65 (530)
T COG0488 3 MITLENLSLAY--------GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELE--PDSGEVTRPKG------- 65 (530)
T ss_pred eEEEeeeEEee--------CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCc--CCCCeEeecCC-------
Confidence 68999999998 57899999999999999999999999999999999999764 56899987542
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhcc-------------CCCC--------------ccHHHHHHHHHHHHHHcCCC
Q 006571 229 SKIGFVTQDDVLFPHLTVKETLTYAALLR-------------LPNT--------------LTKQQKEKRAIDVINELGLE 281 (640)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~-------------~~~~--------------~~~~~~~~~v~~~l~~lgL~ 281 (640)
-+++|++|++.+.+..||.+.+.-+..-. ++.. ...-+.+.++..++..+|++
T Consensus 66 ~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~ 145 (530)
T COG0488 66 LRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFP 145 (530)
T ss_pred ceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCC
Confidence 25999999999999899999887653210 0000 00001134667788888887
Q ss_pred ccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHh
Q 006571 282 RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFH 361 (640)
Q Consensus 282 ~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~ 361 (640)
+. ++. +.+||||||.||+||++|+.+|++|||||||++||..+..-+-+.|++. .| |+|+|||| ...+-+
T Consensus 146 ~~-~~~-----~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-tviiVSHD-R~FLd~ 215 (530)
T COG0488 146 DE-DRP-----VSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-TVIVVSHD-RYFLDN 215 (530)
T ss_pred cc-cCc-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-cEEEEeCC-HHHHHH
Confidence 65 554 4689999999999999999999999999999999999998888888753 46 99999999 556888
Q ss_pred ccCEEEEEcCCeE-EEecChHHH
Q 006571 362 KFDKLILLGKGSL-LYFGKASEA 383 (640)
Q Consensus 362 ~~D~i~vL~~G~i-v~~G~~~~~ 383 (640)
.|++|+-++.|++ .|.|..+.-
T Consensus 216 V~t~I~~ld~g~l~~y~Gny~~~ 238 (530)
T COG0488 216 VATHILELDRGKLTPYKGNYSSY 238 (530)
T ss_pred HhhheEEecCCceeEecCCHHHH
Confidence 9999999999986 566765543
No 366
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=1.4e-32 Score=318.51 Aligned_cols=215 Identities=23% Similarity=0.302 Sum_probs=157.5
Q ss_pred CeeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-CCcccEEEECCEeC--
Q 006571 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-PTVGGSITYNDHPY-- 223 (640)
Q Consensus 147 ~~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~-~~~~G~I~~~G~~~-- 223 (640)
...|+++|++++| +++++|+|+||+|++|+++||+|||||||||||++|+|+... .+.+|+|.+.++..
T Consensus 175 ~~~I~i~nls~~y--------~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g 246 (718)
T PLN03073 175 IKDIHMENFSISV--------GGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVG 246 (718)
T ss_pred ceeEEEceEEEEe--------CCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCC
Confidence 3479999999998 345699999999999999999999999999999999986421 23468887644331
Q ss_pred ---Ch-------------hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHH-------------------HHH
Q 006571 224 ---SK-------------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQ-------------------QKE 268 (640)
Q Consensus 224 ---~~-------------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~-------------------~~~ 268 (640)
+. .+++.++|++|++.+... ++.++...... ...+.+ ..+
T Consensus 247 ~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~-~~~~~~~~~~~----~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 321 (718)
T PLN03073 247 DDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFE-TETGKGKGANK----DGVDKDAVSQRLEEIYKRLELIDAYTAE 321 (718)
T ss_pred CCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhc-ccccccccccc----cccchHHHHHHHHHHHHHHHhcCcchHH
Confidence 10 012335667765443221 22222111000 000111 234
Q ss_pred HHHHHHHHHcCCC-ccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCE
Q 006571 269 KRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKT 347 (640)
Q Consensus 269 ~~v~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~T 347 (640)
+++.+++..+||. +..++ .+..|||||||||+||++|+.+|++|||||||++||+.+...+.+.|+++ +.|
T Consensus 322 ~r~~~~L~~lgl~~~~~~~-----~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~t 393 (718)
T PLN03073 322 ARAASILAGLSFTPEMQVK-----ATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PKT 393 (718)
T ss_pred HHHHHHHHHCCCChHHHhC-----chhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---CCE
Confidence 4566778888885 23343 34689999999999999999999999999999999999999999999876 679
Q ss_pred EEEEeCCCCcHHHhccCEEEEEcCCeEE-EecChHHH
Q 006571 348 VVTTIHQPSSRLFHKFDKLILLGKGSLL-YFGKASEA 383 (640)
Q Consensus 348 vI~~tH~~~~~i~~~~D~i~vL~~G~iv-~~G~~~~~ 383 (640)
||+++|+.. .+...||+|++|++|+++ |.|+.++.
T Consensus 394 viivsHd~~-~l~~~~d~i~~l~~g~i~~~~g~~~~~ 429 (718)
T PLN03073 394 FIVVSHARE-FLNTVVTDILHLHGQKLVTYKGDYDTF 429 (718)
T ss_pred EEEEECCHH-HHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 999999964 577889999999999996 77876543
No 367
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=1.1e-30 Score=264.24 Aligned_cols=191 Identities=23% Similarity=0.371 Sum_probs=135.8
Q ss_pred ccccceeceEEEEeCCeEEEEECCCCCcHHHHH-HHHHcCCCCCCcccEEEEC------------CEeCCh--hcc-CcE
Q 006571 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLL-NLLSGRLMEPTVGGSITYN------------DHPYSK--SLK-SKI 231 (640)
Q Consensus 168 ~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl-~~L~G~~~~~~~~G~I~~~------------G~~~~~--~~~-~~i 231 (640)
.+.++|+||||+|++||+++|+||||||||||+ ..|.. .|++.+. .....+ ..+ ...
T Consensus 6 ~~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~-------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (226)
T cd03270 6 AREHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYA-------EGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSP 78 (226)
T ss_pred chhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHH-------HHHHHHhhcccchhhhhhcccCccccccccCCCc
Confidence 356799999999999999999999999999995 44431 1222110 000000 111 224
Q ss_pred EEEccCCC--CCCCCCHH---HHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCc-cccccccCccCCcCCHHHHHHHH
Q 006571 232 GFVTQDDV--LFPHLTVK---ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRVC 305 (640)
Q Consensus 232 ~yV~Q~~~--l~~~lTV~---Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~LSGGqrqRv~ 305 (640)
++..|++. +.|..+|. +...+...+. ......++ .+.++.++|.+ ..+. .+..||||||||++
T Consensus 79 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~~-~~~l~~~~l~~~~~~~-----~~~~LSgG~~qrv~ 147 (226)
T cd03270 79 AIAIDQKTTSRNPRSTVGTVTEIYDYLRLLF-----ARVGIRER-LGFLVDVGLGYLTLSR-----SAPTLSGGEAQRIR 147 (226)
T ss_pred eEEecCCCCCCCCCccHHHHHHHHHHHHHHh-----hhhhHHHH-HHHHHHCCCCcccccC-----ccCcCCHHHHHHHH
Confidence 44445432 23444544 2222221111 11112222 56789999975 2443 45789999999999
Q ss_pred HHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEE------cCCeEEEe
Q 006571 306 IGNEIIINP--SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYF 377 (640)
Q Consensus 306 IA~aL~~~P--~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL------~~G~iv~~ 377 (640)
|||+|+.+| ++|||||||+|||+.++..+.+.|++++++|.|||++||++. .+ +.||++++| ++|+|+++
T Consensus 148 laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~-~~-~~~d~i~~l~~~~~~~~G~iv~~ 225 (226)
T cd03270 148 LATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDED-TI-RAADHVIDIGPGAGVHGGEIVAQ 225 (226)
T ss_pred HHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHH-HH-HhCCEEEEeCCCccccCCEEEec
Confidence 999999998 599999999999999999999999999878999999999975 34 689999999 99999998
Q ss_pred c
Q 006571 378 G 378 (640)
Q Consensus 378 G 378 (640)
|
T Consensus 226 g 226 (226)
T cd03270 226 G 226 (226)
T ss_pred C
Confidence 6
No 368
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=3e-31 Score=248.81 Aligned_cols=213 Identities=27% Similarity=0.416 Sum_probs=173.2
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeC--C-
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY--S- 224 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~--~- 224 (640)
..|..+||++++.... ..+-.-++|+|+||+++.||++++=||||+||||||++|-|... +++|+|++....- .
T Consensus 3 ~~l~v~~~~KtFtlH~-q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~--~d~G~I~v~H~g~~vdl 79 (235)
T COG4778 3 TPLNVSNVSKTFTLHQ-QGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYL--PDEGQILVRHEGEWVDL 79 (235)
T ss_pred ceeeeecchhheEeee-cCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccC--CCCceEEEEeCcchhhh
Confidence 3588999988875321 11123479999999999999999999999999999999998543 4689999965431 1
Q ss_pred ------h--hc-cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCc
Q 006571 225 ------K--SL-KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRG 295 (640)
Q Consensus 225 ------~--~~-~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~ 295 (640)
+ .. ++.||||.|.-...|..+..|-+.-.+..+ .++.+....++.+++..+++++..-.. .+..
T Consensus 80 ~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~---gv~~~~a~~~a~~Ll~rLnlperLW~L----aPaT 152 (235)
T COG4778 80 VTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLAR---GVPREVARAKAADLLTRLNLPERLWSL----APAT 152 (235)
T ss_pred hccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCCHHHhcC----CCcc
Confidence 1 22 456999999988888888888777655433 567788888999999999998755443 3578
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcC
Q 006571 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (640)
Q Consensus 296 LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~ 371 (640)
+||||+|||.|||.++.+-+||+|||||+.||..++..+++++++-..+|..+|=+-||- +.-...|||++-+..
T Consensus 153 FSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDe-evre~vadR~~~~~~ 227 (235)
T COG4778 153 FSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDE-EVREAVADRLLDVSA 227 (235)
T ss_pred cCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccH-HHHHHHhhheeeccc
Confidence 999999999999999999999999999999999999999999999888899999999993 334557899988764
No 369
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.97 E-value=7.2e-31 Score=243.80 Aligned_cols=133 Identities=44% Similarity=0.768 Sum_probs=117.8
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hccCcEEEEccCCCCCCCCCHHH
Q 006571 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLTVKE 248 (640)
Q Consensus 173 L~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~i~yV~Q~~~l~~~lTV~E 248 (640)
|+|||++|++|++++|+|+||||||||+++|+|... +.+|+|.++|.++.. ..++.++|++|++.+++.+||+|
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~--~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~ 78 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLP--PDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRE 78 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSH--ESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccc--cccccccccccccccccccccccccccccccccccccccccc
Confidence 799999999999999999999999999999999653 468999999999864 45788999999999999999999
Q ss_pred HHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 006571 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 324 (640)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTs 324 (640)
| ...++++++++.+++.+..++.++.. ...||||||||++||+||+.+|+++||||||+
T Consensus 79 ~----------------~~~~~~~~~l~~l~~~~~~~~~~~~~-~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 79 N----------------ESDERIEEVLKKLGLEDLLDRKIGQR-ASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp H----------------HHHHHHHHHHHHTTHGGGTGSBGTSC-GGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred c----------------cccccccccccccccccccccccccc-cchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 9 23445788999999888777777543 47899999999999999999999999999996
No 370
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=5e-30 Score=263.85 Aligned_cols=195 Identities=27% Similarity=0.410 Sum_probs=153.4
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHH-----cCCCC----C----------CcccEEEECCEeCChhccC-
Q 006571 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLS-----GRLME----P----------TVGGSITYNDHPYSKSLKS- 229 (640)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~-----G~~~~----~----------~~~G~I~~~G~~~~~~~~~- 229 (640)
..-|+|||++|+.|++++|.|+||||||||++.+. ..+.. + ...--|.+|..|+....|+
T Consensus 8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~ 87 (261)
T cd03271 8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSN 87 (261)
T ss_pred hhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCc
Confidence 45799999999999999999999999999998652 11110 0 0112477787776421111
Q ss_pred -----------------------------cEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCC
Q 006571 230 -----------------------------KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL 280 (640)
Q Consensus 230 -----------------------------~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 280 (640)
.+.|..++...+..+||.|++.|..... ..+++.++++.+||
T Consensus 88 ~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~---------~~~~~~~~L~~vgL 158 (261)
T cd03271 88 PATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP---------KIARKLQTLCDVGL 158 (261)
T ss_pred HHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh---------hHHHHHHHHHHcCC
Confidence 2456666666667899999999875431 12456788999999
Q ss_pred Cc-cccccccCccCCcCCHHHHHHHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCC
Q 006571 281 ER-CQDTMIGGSFVRGVSGGERKRVCIGNEIIIN---PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 356 (640)
Q Consensus 281 ~~-~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~---P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~ 356 (640)
.+ ..+. .+..||||||||++||++|+.+ |++++|||||+|||+.....+.+.|+++.++|.|||+++|++.
T Consensus 159 ~~l~l~~-----~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~ 233 (261)
T cd03271 159 GYIKLGQ-----PATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLD 233 (261)
T ss_pred chhhhcC-----ccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 76 2343 4578999999999999999996 7999999999999999999999999999888999999999975
Q ss_pred cHHHhccCEEEEE------cCCeEEEecCh
Q 006571 357 SRLFHKFDKLILL------GKGSLLYFGKA 380 (640)
Q Consensus 357 ~~i~~~~D~i~vL------~~G~iv~~G~~ 380 (640)
. .+.||++++| ++|+|++.|++
T Consensus 234 ~--i~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 234 V--IKCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred H--HHhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 3 4679999999 89999999974
No 371
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.96 E-value=6.2e-29 Score=277.52 Aligned_cols=205 Identities=28% Similarity=0.440 Sum_probs=166.7
Q ss_pred CeeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChh
Q 006571 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS 226 (640)
Q Consensus 147 ~~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~ 226 (640)
...++++|+++.|. +.+.+++++||.|.+|+.+||+||||+|||||||+|+|... +.+|+|.+.-.
T Consensus 319 ~~vl~~~~~~~~y~-------~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~--~~~G~v~~g~~----- 384 (530)
T COG0488 319 KLVLEFENVSKGYD-------GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELG--PLSGTVKVGET----- 384 (530)
T ss_pred CeeEEEeccccccC-------CCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcc--cCCceEEeCCc-----
Confidence 34799999999982 23689999999999999999999999999999999999653 44899887532
Q ss_pred ccCcEEEEccCC-CCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHH
Q 006571 227 LKSKIGFVTQDD-VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (640)
Q Consensus 227 ~~~~i~yV~Q~~-~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (640)
-++||..|+. .+.+..|+.|++.-.. |.. .+..+...|..|+++...- ...+..||||||.|+.
T Consensus 385 --v~igyf~Q~~~~l~~~~t~~d~l~~~~----~~~-----~e~~~r~~L~~f~F~~~~~----~~~v~~LSGGEk~Rl~ 449 (530)
T COG0488 385 --VKIGYFDQHRDELDPDKTVLEELSEGF----PDG-----DEQEVRAYLGRFGFTGEDQ----EKPVGVLSGGEKARLL 449 (530)
T ss_pred --eEEEEEEehhhhcCccCcHHHHHHhhC----ccc-----cHHHHHHHHHHcCCChHHH----hCchhhcCHhHHHHHH
Confidence 3499999986 4457889999997532 111 1566888999999964321 1345789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEe-cChHHHH
Q 006571 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF-GKASEAM 384 (640)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~-G~~~~~~ 384 (640)
+|+.++.+|.+|||||||+.||..+...+.+.|.+. .-|||+||||. ..+...|++++++.+ ++..+ |..++..
T Consensus 450 La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f---~Gtvl~VSHDr-~Fl~~va~~i~~~~~-~~~~~~g~y~~y~ 524 (530)
T COG0488 450 LAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF---EGTVLLVSHDR-YFLDRVATRIWLVED-KVEEFEGGYEDYL 524 (530)
T ss_pred HHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC---CCeEEEEeCCH-HHHHhhcceEEEEcC-ceeEcCCCHHHHH
Confidence 999999999999999999999999999999999865 34999999995 457889999999998 66544 7776654
Q ss_pred H
Q 006571 385 A 385 (640)
Q Consensus 385 ~ 385 (640)
+
T Consensus 525 ~ 525 (530)
T COG0488 525 E 525 (530)
T ss_pred H
Confidence 3
No 372
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.96 E-value=1.5e-28 Score=268.80 Aligned_cols=212 Identities=23% Similarity=0.445 Sum_probs=177.8
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC---
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--- 224 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~--- 224 (640)
+.++++|++.. ..++||||++++||+++|-|-=|||+|-|+++|.|. .+..+|+|.+||+++.
T Consensus 262 ~~l~v~~l~~~------------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~--~~~~~G~i~l~G~~v~~~s 327 (500)
T COG1129 262 PVLEVRNLSGG------------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGA--RPASSGEILLDGKPVRIRS 327 (500)
T ss_pred cEEEEecCCCC------------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCC--CcCCCceEEECCEEccCCC
Confidence 45788877642 268999999999999999999999999999999993 3456899999999874
Q ss_pred --hhccCcEEEEccC---CCCCCCCCHHHHHHHHHhccCC-C-CccHHHHHHHHHHHHHHcCCCcc-ccccccCccCCcC
Q 006571 225 --KSLKSKIGFVTQD---DVLFPHLTVKETLTYAALLRLP-N-TLTKQQKEKRAIDVINELGLERC-QDTMIGGSFVRGV 296 (640)
Q Consensus 225 --~~~~~~i~yV~Q~---~~l~~~lTV~Enl~~~~~~~~~-~-~~~~~~~~~~v~~~l~~lgL~~~-~~t~vg~~~~~~L 296 (640)
+..+..|+|||.| .-++..++|++|+.++...+.. . -++.....+.+++.++.+++... .+ ..+..|
T Consensus 328 p~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~-----~~v~~L 402 (500)
T COG1129 328 PRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPE-----QPIGTL 402 (500)
T ss_pred HHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCcc-----chhhcC
Confidence 2456789999987 5688899999999988322211 1 24556666778899999988422 22 345689
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEE
Q 006571 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (640)
Q Consensus 297 SGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (640)
|||.+|||.|||.|..+|++|||||||.|.|.-+..+|++++++++++|++||++|-++ +|+..+||||+||++|+++.
T Consensus 403 SGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSEl-pEll~~~DRIlVm~~Gri~~ 481 (500)
T COG1129 403 SGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSEL-PELLGLSDRILVMREGRIVG 481 (500)
T ss_pred CchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCCh-HHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999996 46889999999999999987
Q ss_pred ecC
Q 006571 377 FGK 379 (640)
Q Consensus 377 ~G~ 379 (640)
.=+
T Consensus 482 e~~ 484 (500)
T COG1129 482 ELD 484 (500)
T ss_pred Eec
Confidence 443
No 373
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.96 E-value=6.8e-29 Score=246.11 Aligned_cols=165 Identities=18% Similarity=0.267 Sum_probs=129.9
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-------CCcccEEEECCEeCCh-hccCcEEEEccCCCCCCCCC
Q 006571 174 NGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-------PTVGGSITYNDHPYSK-SLKSKIGFVTQDDVLFPHLT 245 (640)
Q Consensus 174 ~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~-------~~~~G~I~~~G~~~~~-~~~~~i~yV~Q~~~l~~~lT 245 (640)
+++++++++| +++|+||||||||||+++|+|.+.. ....|++.++|++... ..+++++||+|++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 6789999999 9999999999999999999985421 1123578888876532 3357899999998766
Q ss_pred HHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHh----hCCCEEEEeC
Q 006571 246 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII----INPSLLFLDE 321 (640)
Q Consensus 246 V~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~----~~P~iLlLDE 321 (640)
|+. . ..++++++++. .+..++ .+..||||||||++||++|+ .+|++++|||
T Consensus 89 ------~~~--~---------~~~~~~~~l~~---~~~~~~-----~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDE 143 (197)
T cd03278 89 ------YSI--I---------SQGDVSEIIEA---PGKKVQ-----RLSLLSGGEKALTALALLFAIFRVRPSPFCVLDE 143 (197)
T ss_pred ------eeE--E---------ehhhHHHHHhC---CCcccc-----chhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeC
Confidence 110 0 12345666665 333333 45789999999999999997 4669999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcC
Q 006571 322 PTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (640)
Q Consensus 322 PTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~ 371 (640)
||+|||+.+...+.+.|+++++ +.|||++||++. . .+.||+++.+..
T Consensus 144 P~~~LD~~~~~~l~~~l~~~~~-~~tiIiitH~~~-~-~~~~d~v~~~~~ 190 (197)
T cd03278 144 VDAALDDANVERFARLLKEFSK-ETQFIVITHRKG-T-MEAADRLYGVTM 190 (197)
T ss_pred CcccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHH-H-HhhcceEEEEEe
Confidence 9999999999999999999865 789999999975 3 478999999975
No 374
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.96 E-value=1.2e-29 Score=238.93 Aligned_cols=207 Identities=28% Similarity=0.464 Sum_probs=174.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.++++||... .-|-.+|+.+..||+.-++|||||||||||-.++|.. +-+|+|.++|.++..
T Consensus 3 l~qln~v~~~------------tRL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~---~~sGsi~~~G~~l~~~~~ 67 (248)
T COG4138 3 LMQLNDVAES------------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT---SGSGSIQFAGQPLEAWSA 67 (248)
T ss_pred eeeecccccc------------ccccccccccccceEEEEECCCCccHHHHHHHHhCCC---CCCceEEECCcchhHHhH
Confidence 4667777654 2466799999999999999999999999999999965 348999999999853
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHH
Q 006571 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (640)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (640)
++.++-+|..|+..-...|.|..++.+. . +.+++...++++...++|.+.... .+..|||||.|||
T Consensus 68 ~eLArhRAYLsQqq~p~f~mpV~~YL~L~----q----P~~~~a~~i~~i~~~L~l~DKL~R-----s~~qLSGGEWQRV 134 (248)
T COG4138 68 TELARHRAYLSQQQTPPFAMPVWHYLTLH----Q----PDKTRTELLNDVAGALALDDKLGR-----STNQLSGGEWQRV 134 (248)
T ss_pred hHHHHHHHHHhhccCCcchhhhhhhhhhc----C----chHHHHHHHHHHHhhhcccchhhh-----hhhhcCcccceee
Confidence 5667778998876544468999988763 2 345667778888999999876654 3478999999999
Q ss_pred HHHHHHhh-----CC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEe
Q 006571 305 CIGNEIII-----NP--SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (640)
Q Consensus 305 ~IA~aL~~-----~P--~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (640)
-+|...+. || ++|+||||.++||...+..+...|.++++.|.+|||+.||++. ..+.+|++.+|+.|++...
T Consensus 135 RLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNh-TLrhA~~~wLL~rG~l~~~ 213 (248)
T COG4138 135 RLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNH-TLRHAHRAWLLKRGKLLAS 213 (248)
T ss_pred EEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhh-HHHHHHHHHHHhcCeEEee
Confidence 99987654 44 6999999999999999999999999999999999999999886 5688999999999999999
Q ss_pred cChHHHH
Q 006571 378 GKASEAM 384 (640)
Q Consensus 378 G~~~~~~ 384 (640)
|..+|++
T Consensus 214 G~~~eVl 220 (248)
T COG4138 214 GRREEVL 220 (248)
T ss_pred cchhhhc
Confidence 9999986
No 375
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.95 E-value=6.2e-29 Score=249.16 Aligned_cols=179 Identities=15% Similarity=0.187 Sum_probs=134.4
Q ss_pred ccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHH
Q 006571 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVK 247 (640)
Q Consensus 168 ~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~ 247 (640)
+++.+|+++++ ++++|+||||||||||+++|.- . +|.+.....++++++++|+..+++.+|++
T Consensus 15 ~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~-~-----------~G~~~~~~~~~~i~~~~~~~~~~~~~~~~ 77 (212)
T cd03274 15 AGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLF-V-----------FGFRASKMRQKKLSDLIHNSAGHPNLDSC 77 (212)
T ss_pred CCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHH-H-----------hccCHHHhhhhhHHHHhcCCCCCCCCceE
Confidence 45679999987 8999999999999999999982 1 22222112235799999999999999999
Q ss_pred HHHHHHHhccCC-----CCccHHHHHH--HHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhh----CCCE
Q 006571 248 ETLTYAALLRLP-----NTLTKQQKEK--RAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIII----NPSL 316 (640)
Q Consensus 248 Enl~~~~~~~~~-----~~~~~~~~~~--~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~----~P~i 316 (640)
+++.+....... .....+.... ...++++.++|++..++. +..||+|||||++||++++. +|++
T Consensus 78 ~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~-----~~~lS~G~~~r~~la~al~~~~~~~p~i 152 (212)
T cd03274 78 SVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKN-----ISNLSGGEKTLSSLALVFALHHYKPTPL 152 (212)
T ss_pred EEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccc-----hhhcCHHHHHHHHHHHHHHhcccCCCCE
Confidence 988765432100 0011111000 014455667787766654 35899999999999999974 5799
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcC
Q 006571 317 LFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (640)
Q Consensus 317 LlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~ 371 (640)
++|||||+|||+.++..+.+.|+++++ +.|+|++||++ ++.+.||++++|..
T Consensus 153 lilDEPt~gLD~~~~~~l~~~l~~~~~-~~~~iivs~~~--~~~~~~d~v~~~~~ 204 (212)
T cd03274 153 YVMDEIDAALDFRNVSIVANYIKERTK-NAQFIVISLRN--NMFELADRLVGIYK 204 (212)
T ss_pred EEEcCCCcCCCHHHHHHHHHHHHHHcC-CCEEEEEECcH--HHHHhCCEEEEEEe
Confidence 999999999999999999999999864 67899999994 47789999999975
No 376
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.94 E-value=4.8e-27 Score=239.57 Aligned_cols=186 Identities=16% Similarity=0.309 Sum_probs=131.6
Q ss_pred ccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC---------------CCCCccc--------EEEECCEe--
Q 006571 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRL---------------MEPTVGG--------SITYNDHP-- 222 (640)
Q Consensus 168 ~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~---------------~~~~~~G--------~I~~~G~~-- 222 (640)
+++.++++++ |++++|+||||||||||+++|++.+ .. +.+| +|.+++.+
T Consensus 13 ~~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~-~~~~~~~~~~~v~i~~~~~~~~ 86 (243)
T cd03272 13 KDQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLH-EGSGPSVMSAYVEIIFDNSDNR 86 (243)
T ss_pred ccCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEe-CCCCCCCceEEEEEEEEcCCCc
Confidence 3567888887 7899999999999999999998321 11 1234 56665532
Q ss_pred --CC---hhccCcEEEEccCCCCCC-CCCHHHHHHHHHhccCCCCccH-HHHHHHHHHHHHHcCCCccccccccCccCCc
Q 006571 223 --YS---KSLKSKIGFVTQDDVLFP-HLTVKETLTYAALLRLPNTLTK-QQKEKRAIDVINELGLERCQDTMIGGSFVRG 295 (640)
Q Consensus 223 --~~---~~~~~~i~yV~Q~~~l~~-~lTV~Enl~~~~~~~~~~~~~~-~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~ 295 (640)
+. ...++.++|++|+..+++ ..|..|...+............ .....++. +.+++.+..+. .+..
T Consensus 87 ~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~---~l~~l~~~~~~-----~~~~ 158 (243)
T cd03272 87 FPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKIN---SLTNMKQDEQQ-----EMQQ 158 (243)
T ss_pred cCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchH---Hhhhccccccc-----cccc
Confidence 11 134677999999888877 4577776665544322211000 00011222 22344333332 3568
Q ss_pred CCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEc
Q 006571 296 VSGGERKRVCIGNEIII----NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (640)
Q Consensus 296 LSGGqrqRv~IA~aL~~----~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~ 370 (640)
||||||||++||++|+. +|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++ ++.+.||++++|.
T Consensus 159 lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~--~~~~~~d~i~~l~ 234 (243)
T cd03272 159 LSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRP--ELLEVADKFYGVK 234 (243)
T ss_pred cCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCH--HHHhhCCEEEEEE
Confidence 99999999999999974 5899999999999999999999999999865 78889888884 4678999999986
No 377
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.94 E-value=3.5e-27 Score=242.27 Aligned_cols=182 Identities=18% Similarity=0.246 Sum_probs=136.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCE-eCCh------hccCcEEEEccCC---------CCCCCCCH
Q 006571 183 GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH-PYSK------SLKSKIGFVTQDD---------VLFPHLTV 246 (640)
Q Consensus 183 Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~-~~~~------~~~~~i~yV~Q~~---------~l~~~lTV 246 (640)
..+++|+||||||||||+++|++.+. +...|++.+.|. ++-. ..+.++++++|++ .+.|.+||
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~-~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV 103 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLG-ITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITV 103 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc-ccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEE
Confidence 44999999999999999999998654 223568888776 3211 1234799999985 35668899
Q ss_pred HHHHHHHHhccCCCCc-cHHHHHHHHHHHHHHcCCCccccc---------------cccCccCCcCCHHHHHHHHHHHHH
Q 006571 247 KETLTYAALLRLPNTL-TKQQKEKRAIDVINELGLERCQDT---------------MIGGSFVRGVSGGERKRVCIGNEI 310 (640)
Q Consensus 247 ~Enl~~~~~~~~~~~~-~~~~~~~~v~~~l~~lgL~~~~~t---------------~vg~~~~~~LSGGqrqRv~IA~aL 310 (640)
.+++.++...+. .. .+....+++.++++.+||...... ...+..+..||||||||++||++|
T Consensus 104 ~r~I~~~~~~~~--~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al 181 (251)
T cd03273 104 TRQIVLGGTNKY--LINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLIL 181 (251)
T ss_pred EEEEEcCCceEE--EECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHH
Confidence 998876532211 01 122334678889999998611000 011234678999999999999999
Q ss_pred h----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEc
Q 006571 311 I----INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (640)
Q Consensus 311 ~----~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~ 370 (640)
+ .+|++++|||||++||+.++..+.+.|+++. +|.|||++||++ ++.+.||+++-+.
T Consensus 182 ~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~g~~ii~iSH~~--~~~~~~d~v~~~~ 242 (251)
T cd03273 182 ALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-KGSQFIVVSLKE--GMFNNANVLFRTR 242 (251)
T ss_pred HHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECCH--HHHHhCCEEEEEE
Confidence 8 5789999999999999999999999999985 488999999994 4678899998875
No 378
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.94 E-value=2.2e-26 Score=230.71 Aligned_cols=192 Identities=18% Similarity=0.182 Sum_probs=132.3
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEe-CCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECC-Ee-CC-
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVN-PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND-HP-YS- 224 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~-~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G-~~-~~- 224 (640)
.|+++|+. +| .++ ++|+|... +|++++|+||||||||||+++|++.++.+. .+....+. .. +.
T Consensus 5 ~i~l~nf~-~y--------~~~---~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~-~~~~~~~~~~~~~~~ 71 (213)
T cd03279 5 KLELKNFG-PF--------REE---QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKT-PRYGRQENLRSVFAP 71 (213)
T ss_pred EEEEECCc-Cc--------CCc---eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCc-cccccchhHHHHhcC
Confidence 47788776 54 111 55666644 589999999999999999999997554322 33333321 01 11
Q ss_pred hhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHH
Q 006571 225 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (640)
Q Consensus 225 ~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (640)
...+..|++++|++.... ++..+. .++.++..+.+ .+...++.+..+ ..+..||||||||+
T Consensus 72 ~~~~~~v~~~f~~~~~~~--~~~r~~----------gl~~~~~~~~~--~l~~g~l~~~l~-----~~~~~lS~G~~~r~ 132 (213)
T cd03279 72 GEDTAEVSFTFQLGGKKY--RVERSR----------GLDYDQFTRIV--LLPQGEFDRFLA-----RPVSTLSGGETFLA 132 (213)
T ss_pred CCccEEEEEEEEECCeEE--EEEEec----------CCCHHHHHHhh--hhhhcchHHHhc-----CCccccCHHHHHHH
Confidence 233566999999874311 121111 12222221111 122223333333 34578999999999
Q ss_pred HHHHHHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCe
Q 006571 305 CIGNEIII----------NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (640)
Q Consensus 305 ~IA~aL~~----------~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~ 373 (640)
+||++|+. +|+++||||||++||+.+...+.+.|++++++++|||++||++. .+...+|+++++++|.
T Consensus 133 ~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~-~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 133 SLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEE-LKERIPQRLEVIKTPG 210 (213)
T ss_pred HHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchH-HHHhhCcEEEEEecCC
Confidence 99999985 57899999999999999999999999999877999999999975 4678899999999875
No 379
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.94 E-value=1.5e-25 Score=274.45 Aligned_cols=138 Identities=25% Similarity=0.365 Sum_probs=112.4
Q ss_pred CCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCcc-ccccccCccCCcCCHHHHHHHHHHHHHh---hCCC
Q 006571 240 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNEII---INPS 315 (640)
Q Consensus 240 l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~t~vg~~~~~~LSGGqrqRv~IA~aL~---~~P~ 315 (640)
.+...||.|+|.++..-........++..+++ ++++.+||.+. .+. .+..||||||||++||++|+ .+|+
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q-----~~~tLSGGE~QRV~LAraL~~~~~~P~ 832 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGR-----PLSSLSGGEIQRLKLAYELLAPSKKPT 832 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcC-----ccccCCHHHHHHHHHHHHHhhcCCCCC
Confidence 56678999999987542211111233444556 57888999764 444 34689999999999999998 6999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEc------CCeEEEecChHHHHH
Q 006571 316 LLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG------KGSLLYFGKASEAMA 385 (640)
Q Consensus 316 iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~------~G~iv~~G~~~~~~~ 385 (640)
+|||||||+|||+.+...+++.|++++++|.|||+++|++. .+ +.||+|++|. +|+++..|+++++..
T Consensus 833 LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~-~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~ 906 (1809)
T PRK00635 833 LYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMH-VV-KVADYVLELGPEGGNLGGYLLASCSPEELIH 906 (1809)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEEccCCCCCCCEEEEeCCHHHHHh
Confidence 99999999999999999999999999888999999999975 34 8999999996 799999999998753
No 380
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.93 E-value=9.7e-27 Score=242.54 Aligned_cols=205 Identities=24% Similarity=0.308 Sum_probs=163.8
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (640)
..|+++||.|.|.. ..-=+..||++|+.||++-|+|.||||||||+++|.|. +. |++|+|.+||+|++.
T Consensus 321 ~~lelrnvrfay~~-------~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL-~~-PqsG~I~ldg~pV~~e~ 391 (546)
T COG4615 321 KTLELRNVRFAYQD-------NAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGL-YQ-PQSGEILLDGKPVSAEQ 391 (546)
T ss_pred cceeeeeeeeccCc-------ccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcc-cC-CCCCceeECCccCCCCC
Confidence 47999999999842 22457889999999999999999999999999999995 44 468999999999863
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHH
Q 006571 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (640)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (640)
++|+-++-|+-|..+|+.+- .++.. ...+.++..++.+.|.+...-.-|+-..-.||-|||||
T Consensus 392 ledYR~LfSavFsDyhLF~~ll------------~~e~~---as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKR 456 (546)
T COG4615 392 LEDYRKLFSAVFSDYHLFDQLL------------GPEGK---ASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKR 456 (546)
T ss_pred HHHHHHHHHHHhhhHhhhHhhh------------CCccC---CChHHHHHHHHHHHHhhhhcccCCcccccccccchHHH
Confidence 56778888999988887521 11111 12334666777777665433222222345699999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-HHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEec
Q 006571 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI-AEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (640)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l-~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (640)
+++-.||+-+-+|+++||=-+--||.-+..+.+.+--+ .++||||+.+|||- .-+..+||++.+.+|++++.-
T Consensus 457 lAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd--~YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 457 LALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDD--HYFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred HHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCc--hhhhhHHHHHHHhcCceeecc
Confidence 99999999999999999999999999999998877654 56799999999994 368899999999999998764
No 381
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.93 E-value=5.2e-25 Score=236.79 Aligned_cols=222 Identities=23% Similarity=0.382 Sum_probs=186.1
Q ss_pred CeeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeC---
Q 006571 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY--- 223 (640)
Q Consensus 147 ~~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~--- 223 (640)
.+.|+++|++..- ..+...+++|||+|++||+++|.|-.|-|-+.|+.+|+|... + .+|+|.++|+++
T Consensus 255 ~~vL~V~~L~v~~-------~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~-~-~~G~I~l~G~~v~~~ 325 (501)
T COG3845 255 EVVLEVEDLSVKD-------RRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRK-P-ASGRILLNGKDVLGR 325 (501)
T ss_pred CeEEEEeeeEeec-------CCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCc-c-CCceEEECCEecccc
Confidence 4579999999752 223578999999999999999999999999999999999543 3 459999999996
Q ss_pred -Ch--hccCcEEEEccCC---CCCCCCCHHHHHHHHHhccCC----CCccHHHHHHHHHHHHHHcCCCccccccccCccC
Q 006571 224 -SK--SLKSKIGFVTQDD---VLFPHLTVKETLTYAALLRLP----NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFV 293 (640)
Q Consensus 224 -~~--~~~~~i~yV~Q~~---~l~~~lTV~Enl~~~~~~~~~----~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~ 293 (640)
+. ..+..++|||.|. -+.+.+|+.||+.+....+.| .-+...+.++.+.+++++++...... ....
T Consensus 326 ~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~----~~~a 401 (501)
T COG3845 326 LSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSP----DAPA 401 (501)
T ss_pred CCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCC----Ccch
Confidence 21 2345699999985 467889999999987643211 12456777888999999998863221 1235
Q ss_pred CcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCe
Q 006571 294 RGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (640)
Q Consensus 294 ~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~ 373 (640)
+.||||++||+-+||+|.++|++|+..+||-|||..+...|.+.|.++++.|+.|++++-++. +++.+||||.||++|+
T Consensus 402 ~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLD-Eil~lsDrIaVi~~Gr 480 (501)
T COG3845 402 RSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLD-EILELSDRIAVIYEGR 480 (501)
T ss_pred hhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHH-HHHHhhheeeeeeCCc
Confidence 789999999999999999999999999999999999999999999999999999999999975 6899999999999999
Q ss_pred EEEecChHH
Q 006571 374 LLYFGKASE 382 (640)
Q Consensus 374 iv~~G~~~~ 382 (640)
++...++++
T Consensus 481 i~~~~~~~~ 489 (501)
T COG3845 481 IVGIVPPEE 489 (501)
T ss_pred eeccccccc
Confidence 999888765
No 382
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.93 E-value=3.3e-26 Score=228.14 Aligned_cols=164 Identities=17% Similarity=0.270 Sum_probs=125.0
Q ss_pred eEEEEeCCeEEEEECCCCCcHHHHHHHHH----cCCCCCCcccEEEECCEeCC-hhccCcEEEEccCC-----CCCCCCC
Q 006571 176 ITGSVNPGEVLALMGPSGSGKTTLLNLLS----GRLMEPTVGGSITYNDHPYS-KSLKSKIGFVTQDD-----VLFPHLT 245 (640)
Q Consensus 176 vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~----G~~~~~~~~G~I~~~G~~~~-~~~~~~i~yV~Q~~-----~l~~~lT 245 (640)
.++++.+| +++|+||||||||||+++|. |... +.+|.+..+...+. ...+..|++++|++ .....+|
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~--~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~ 92 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELP--PNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLA 92 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCC--cccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhh
Confidence 45667788 99999999999999999995 7543 33455542222222 23456799999987 4455668
Q ss_pred HHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHH------HHHHHHHhhCCCEEEE
Q 006571 246 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR------VCIGNEIIINPSLLFL 319 (640)
Q Consensus 246 V~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR------v~IA~aL~~~P~iLlL 319 (640)
+.||+.+.. .. .+++.+ + ..++.||+||||| ++||++++.+|++++|
T Consensus 93 ~~~~~~~~~---------~~----~~~~~~---------~-----~~~~~LS~G~~~~~~la~rlala~al~~~p~illl 145 (204)
T cd03240 93 ILENVIFCH---------QG----ESNWPL---------L-----DMRGRCSGGEKVLASLIIRLALAETFGSNCGILAL 145 (204)
T ss_pred Hhhceeeec---------hH----HHHHHH---------h-----cCccccCccHHHHHHHHHHHHHHHHhccCCCEEEE
Confidence 888886531 11 122233 2 2356899999996 7899999999999999
Q ss_pred eCCCCCCCHHHHH-HHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcC
Q 006571 320 DEPTSGLDSTTAL-RIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGK 371 (640)
Q Consensus 320 DEPTsgLD~~s~~-~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~ 371 (640)
||||++||+..+. .+.+.|++++++ |.|||++||++. ....||+++.|.+
T Consensus 146 DEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~--~~~~~d~i~~l~~ 197 (204)
T cd03240 146 DEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEE--LVDAADHIYRVEK 197 (204)
T ss_pred cCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHH--HHhhCCEEEEEee
Confidence 9999999999999 999999999876 889999999964 3567999999965
No 383
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.93 E-value=9.2e-25 Score=257.66 Aligned_cols=126 Identities=29% Similarity=0.458 Sum_probs=106.3
Q ss_pred CCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCcc-ccccccCccCCcCCHHHHHHHHHHHHHhhCC---CEEEE
Q 006571 244 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNEIIINP---SLLFL 319 (640)
Q Consensus 244 lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P---~iLlL 319 (640)
+||.|++.|...+. . ..+..+.++.+||... .+. .+..||||||||+.||++|+.+| +++||
T Consensus 792 ltv~E~l~~f~~~~------~---i~~~l~~L~~vgL~~l~l~~-----~~~tLSgGEkQRl~LAraL~~~p~~~~llIL 857 (943)
T PRK00349 792 MTVEEALEFFEAIP------K---IARKLQTLVDVGLGYIKLGQ-----PATTLSGGEAQRVKLAKELSKRSTGKTLYIL 857 (943)
T ss_pred CcHHHHHHHHHhch------h---hhHHHHHHHHCCCCcccccC-----CcccCCHHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 78999988865431 1 1234578899999752 333 34689999999999999999999 99999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEE------cCCeEEEecChHHHHH
Q 006571 320 DEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEAMA 385 (640)
Q Consensus 320 DEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL------~~G~iv~~G~~~~~~~ 385 (640)
||||+|||+.....+++.|+++.++|.|||+++|++.. ...||+|+.| ++|++++.|+++++..
T Consensus 858 DEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~--i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~ 927 (943)
T PRK00349 858 DEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDV--IKTADWIIDLGPEGGDGGGEIVATGTPEEVAK 927 (943)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH--HHhCCEEEEecCCcCCCCCEEEEeCCHHHHHh
Confidence 99999999999999999999998889999999999753 4679999999 6899999999998753
No 384
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.93 E-value=3.1e-25 Score=247.11 Aligned_cols=197 Identities=28% Similarity=0.455 Sum_probs=156.4
Q ss_pred CeeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChh
Q 006571 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS 226 (640)
Q Consensus 147 ~~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~ 226 (640)
...|+++||+..-+ ..+..|++.++.++|||-+.|.||||||||||+|+|+|. . |--+|+|.+-
T Consensus 390 ~~~i~~~nl~l~~p-------~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGL-W-P~g~G~I~~P------- 453 (604)
T COG4178 390 DHGITLENLSLRTP-------DGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGL-W-PWGSGRISMP------- 453 (604)
T ss_pred cceeEEeeeeEECC-------CCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhcc-C-ccCCCceecC-------
Confidence 35799999998742 345899999999999999999999999999999999994 3 3345776543
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCcccccccc-CccCCcCCHHHHHHHH
Q 006571 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIG-GSFVRGVSGGERKRVC 305 (640)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg-~~~~~~LSGGqrqRv~ 305 (640)
....+-|+||.|.+... |.||-|.|+... ... .++.+.++|.++||++..+..-+ ++.-+.||+||||||+
T Consensus 454 ~~~~~lflpQ~PY~p~G-tLre~l~YP~~~---~~~----~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRla 525 (604)
T COG4178 454 ADSALLFLPQRPYLPQG-TLREALCYPNAA---PDF----SDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLA 525 (604)
T ss_pred CCCceEEecCCCCCCCc-cHHHHHhCCCCC---CCC----ChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHH
Confidence 12458999999998876 999999986421 112 34557788889999876654322 1223569999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEc
Q 006571 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (640)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~ 370 (640)
+||.|+++|++++|||.||+||+.++..+++.+++-. .+.|||-|.|++. +..+.++.+-+.
T Consensus 526 fARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l-p~~tvISV~Hr~t--l~~~h~~~l~l~ 587 (604)
T COG4178 526 FARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDATVISVGHRPT--LWNFHSRQLELL 587 (604)
T ss_pred HHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC-CCCEEEEeccchh--hHHHHhhheeec
Confidence 9999999999999999999999999999999998743 3889999999965 456666655554
No 385
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.91 E-value=1.1e-23 Score=248.11 Aligned_cols=125 Identities=27% Similarity=0.461 Sum_probs=102.6
Q ss_pred CCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCcc-ccccccCccCCcCCHHHHHHHHHHHHHhh---CCCEEE
Q 006571 243 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNEIII---NPSLLF 318 (640)
Q Consensus 243 ~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~t~vg~~~~~~LSGGqrqRv~IA~aL~~---~P~iLl 318 (640)
.+||.|.+.|...+. . ..+..++++.+||... .+. .+..|||||+||+.||++|+. +|++++
T Consensus 789 ~~tv~e~~~f~~~~~---~------i~~~l~~L~~~gL~~l~l~~-----~~~tLSgGe~QRl~LA~aL~~~~~~p~llI 854 (924)
T TIGR00630 789 DMTVEEAYEFFEAVP---S------ISRKLQTLCDVGLGYIKLGQ-----PATTLSGGEAQRIKLAKELSKRSTGRTLYI 854 (924)
T ss_pred CCcHHHHHHHHHhcc---c------hhHHHHHHHHcCCCchhhcC-----ccccCCHHHHHHHHHHHHHhhcCCCCCEEE
Confidence 367777777754321 0 1134577888999642 333 357899999999999999997 599999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEE------cCCeEEEecChHHH
Q 006571 319 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEA 383 (640)
Q Consensus 319 LDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL------~~G~iv~~G~~~~~ 383 (640)
|||||+|||+.....+++.|+++.++|.|||+++|++.. + ..||+|++| ++|++++.|+++++
T Consensus 855 LDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~-i-~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 855 LDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDV-I-KTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-H-HhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 999999999999999999999998889999999999753 4 679999999 79999999999875
No 386
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.91 E-value=1.5e-24 Score=234.12 Aligned_cols=215 Identities=24% Similarity=0.359 Sum_probs=145.3
Q ss_pred CeeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChh
Q 006571 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS 226 (640)
Q Consensus 147 ~~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~ 226 (640)
...+.++|+++++ ..+.+++|++|++.+|+.++|+|||||||||+|++|.|+..+.+..=.++.-.+++...
T Consensus 73 s~dvk~~sls~s~--------~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps 144 (614)
T KOG0927|consen 73 SRDVKIESLSLSF--------HGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPS 144 (614)
T ss_pred cccceeeeeeecc--------CCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCc
Confidence 3468999999987 46789999999999999999999999999999999999876433222222222222111
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHh-ccC----------------CCCccHHHHHHHHHHHHHHcCC-Cccccccc
Q 006571 227 LKSKIGFVTQDDVLFPHLTVKETLTYAAL-LRL----------------PNTLTKQQKEKRAIDVINELGL-ERCQDTMI 288 (640)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~-~~~----------------~~~~~~~~~~~~v~~~l~~lgL-~~~~~t~v 288 (640)
...-+-+|.+ +....+.-+.+-.. +.. ...+..+..+.++..++..+|. ++..+.
T Consensus 145 ~~~av~~v~~-----~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k-- 217 (614)
T KOG0927|consen 145 EKQAVQAVVM-----ETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDK-- 217 (614)
T ss_pred hHHHHHHHhh-----hhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHH--
Confidence 0000111110 00011111111000 000 0012223334455566666654 333333
Q ss_pred cCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCC-EEEEEeCCCCcHHHhccCEEE
Q 006571 289 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGK-TVVTTIHQPSSRLFHKFDKLI 367 (640)
Q Consensus 289 g~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~-TvI~~tH~~~~~i~~~~D~i~ 367 (640)
.+.+||||+|.|+++||+|..+|++|+|||||++||..+..-+-+.|.+. .+ ++|+++|.- +.+-..|.+|+
T Consensus 218 ---~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~---d~~~lVi~sh~Q-Dfln~vCT~Ii 290 (614)
T KOG0927|consen 218 ---KVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKY---DRIILVIVSHSQ-DFLNGVCTNII 290 (614)
T ss_pred ---HhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhc---cCceEEEEecch-hhhhhHhhhhh
Confidence 45789999999999999999999999999999999999998888888764 33 899999984 45778999999
Q ss_pred EEcCCe-EEEecChHHH
Q 006571 368 LLGKGS-LLYFGKASEA 383 (640)
Q Consensus 368 vL~~G~-iv~~G~~~~~ 383 (640)
-|++++ +.|.|+.++.
T Consensus 291 ~l~~kkl~~y~Gnydqy 307 (614)
T KOG0927|consen 291 HLDNKKLIYYEGNYDQY 307 (614)
T ss_pred eecccceeeecCCHHHH
Confidence 999999 6777876654
No 387
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.91 E-value=1.2e-24 Score=234.96 Aligned_cols=203 Identities=22% Similarity=0.343 Sum_probs=158.4
Q ss_pred CeeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChh
Q 006571 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS 226 (640)
Q Consensus 147 ~~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~ 226 (640)
++.+.+.||+|.|. ++..++++++|-|.+++.+|+|||||+|||||||++.|.+. +..|.|.-.
T Consensus 387 ~pvi~~~nv~F~y~-------~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~--p~~G~vs~~------- 450 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYS-------DNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQ--PTIGMVSRH------- 450 (614)
T ss_pred CCeEEEeccccCCC-------CcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccc--ccccccccc-------
Confidence 45799999999983 22379999999999999999999999999999999999765 457877533
Q ss_pred ccCcEEEEccC--CCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHH
Q 006571 227 LKSKIGFVTQD--DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (640)
Q Consensus 227 ~~~~i~yV~Q~--~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (640)
...++++..|+ +.+--+.++-|++.-.. + +....+.+..+|..+||....++ ...++||+|||+||
T Consensus 451 ~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~----~----~~~~~e~~r~ilgrfgLtgd~q~----~p~~~LS~Gqr~rV 518 (614)
T KOG0927|consen 451 SHNKLPRYNQHLAEQLDLDKSSLEFMMPKF----P----DEKELEEMRSILGRFGLTGDAQV----VPMSQLSDGQRRRV 518 (614)
T ss_pred ccccchhhhhhhHhhcCcchhHHHHHHHhc----c----ccchHHHHHHHHHHhCCCccccc----cchhhcccccchhH
Confidence 22345555664 33333567888776321 1 12345667889999999844433 24579999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeE-EEecChH
Q 006571 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL-LYFGKAS 381 (640)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~i-v~~G~~~ 381 (640)
.+|+.++..|.||+|||||+|||..+...+-+.|.+. .-+||+++||.. .+-+.+++|.+..+|.+ .+.|...
T Consensus 519 lFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDfr-lI~qVaeEi~~c~~~~~~~~~G~i~ 592 (614)
T KOG0927|consen 519 LFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDFR-LISQVAEEIWVCENGTVTKWDGDIE 592 (614)
T ss_pred HHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechhh-HHHHHHHHhHhhccCceeecCccHH
Confidence 9999999999999999999999999988888888764 348999999965 47788999999998765 5667543
No 388
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.91 E-value=1.4e-24 Score=209.92 Aligned_cols=229 Identities=21% Similarity=0.321 Sum_probs=175.5
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--cccEEEECCEeCC---
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT--VGGSITYNDHPYS--- 224 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~--~~G~I~~~G~~~~--- 224 (640)
|.++|++..+.. +.+...++++||+++..||+-++||.||||||-..|+|+|...+.- +.-+..+++.++-
T Consensus 4 LDIrnL~IE~~T----sqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~ 79 (330)
T COG4170 4 LDIRNLTIEFKT----SQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLS 79 (330)
T ss_pred ccccceEEEEec----CCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCC
Confidence 556777776633 3355679999999999999999999999999999999999665321 2344556666542
Q ss_pred h-h----ccCcEEEEccCCC--CCCCCCHHHHHHHHHhccCCCC---ccHHHHHHHHHHHHHHcCCCccccccccCccCC
Q 006571 225 K-S----LKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNT---LTKQQKEKRAIDVINELGLERCQDTMIGGSFVR 294 (640)
Q Consensus 225 ~-~----~~~~i~yV~Q~~~--l~~~lTV~Enl~~~~~~~~~~~---~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~ 294 (640)
. + .-+.|+++||+|. |-|.-+|...|.-....+.-+. -.-..++.++-++|..+|+.+..|-+ ..++.
T Consensus 80 Pr~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM--~SYP~ 157 (330)
T COG4170 80 PRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIM--RSYPY 157 (330)
T ss_pred hHHhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHH--HhCcc
Confidence 1 2 2245889999985 4444444433322111110000 00123566788999999999877643 45788
Q ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCcHHHhccCEEEEEcCCe
Q 006571 295 GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (640)
Q Consensus 295 ~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~ 373 (640)
+|--||-|+|.||.|++.+|++|+.||||+++|+.++.+|.++|.++.+ +|.||++++||+.. +.+.||+|-||.-|+
T Consensus 158 ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~-is~W~d~i~VlYCGQ 236 (330)
T COG4170 158 ELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQM-ISQWADKINVLYCGQ 236 (330)
T ss_pred hhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHH-HHHHhhheEEEEecc
Confidence 9999999999999999999999999999999999999999999999975 48999999999764 789999999999999
Q ss_pred EEEecChHHHHH
Q 006571 374 LLYFGKASEAMA 385 (640)
Q Consensus 374 iv~~G~~~~~~~ 385 (640)
-++.++.+++++
T Consensus 237 ~~ESa~~e~l~~ 248 (330)
T COG4170 237 TVESAPSEELVT 248 (330)
T ss_pred cccccchhHHhc
Confidence 999999999874
No 389
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.89 E-value=5.6e-23 Score=203.99 Aligned_cols=167 Identities=20% Similarity=0.216 Sum_probs=121.3
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEE--CCEeCCh-----hccCcEEEEccCCCCCCCCC
Q 006571 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITY--NDHPYSK-----SLKSKIGFVTQDDVLFPHLT 245 (640)
Q Consensus 173 L~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~--~G~~~~~-----~~~~~i~yV~Q~~~l~~~lT 245 (640)
++++++++.+| +.+|+||||||||||+.+|...+ .|+... .|..... .....|.+++|+..++++
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l-----~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~-- 83 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGL-----GGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDAN-- 83 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHh-----cCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccCC--
Confidence 46788888888 88999999999999999997422 122111 1221111 123458888888766541
Q ss_pred HHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHH----hhCCCEEEEeC
Q 006571 246 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEI----IINPSLLFLDE 321 (640)
Q Consensus 246 V~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL----~~~P~iLlLDE 321 (640)
. .. ....+.++++++. .+..++ .++.||+|||||++||++| +.+|++++|||
T Consensus 84 ------------~---~~-~~~~~~~~~~l~~---~~~~~~-----~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDE 139 (198)
T cd03276 84 ------------P---LC-VLSQDMARSFLTS---NKAAVR-----DVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDE 139 (198)
T ss_pred ------------c---CC-HHHHHHHHHHhcc---ccccCC-----cccccChhHHHHHHHHHHHHHhcccCCCEEEecC
Confidence 0 11 1123456677765 344443 4578999999999999999 58999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHC---CCEEEEEeCCCCcHHHhccCEEEEEcCCe
Q 006571 322 PTSGLDSTTALRIVQMLQDIAEA---GKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (640)
Q Consensus 322 PTsgLD~~s~~~i~~~L~~l~~~---g~TvI~~tH~~~~~i~~~~D~i~vL~~G~ 373 (640)
||+|||+.+...+.+.|++++++ +.|||+++|++.. +.. +|+|.+|..++
T Consensus 140 P~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~-i~~-~d~v~~~~~~~ 192 (198)
T cd03276 140 FDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISG-LAS-SDDVKVFRMKD 192 (198)
T ss_pred cccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccc-ccc-ccceeEEEecC
Confidence 99999999999999999998653 3589999999764 444 59999998754
No 390
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.88 E-value=2.3e-22 Score=213.31 Aligned_cols=174 Identities=27% Similarity=0.374 Sum_probs=135.7
Q ss_pred ceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHH
Q 006571 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLT 251 (640)
Q Consensus 172 iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~ 251 (640)
-|.-=.++|..||+++++||||-||||+.++|+|.+. +++|. .. .-+|+|=||--.--...||.+.|.
T Consensus 356 ~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ik--Pdeg~----~~------~~~vSyKPQyI~~~~~gtV~~~l~ 423 (591)
T COG1245 356 KLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIK--PDEGS----EE------DLKVSYKPQYISPDYDGTVEDLLR 423 (591)
T ss_pred EEEecCCeeecceEEEEECCCCcchHHHHHHHhcccc--CCCCC----Cc------cceEeecceeecCCCCCcHHHHHH
Confidence 3444456677789999999999999999999999765 45675 11 234889999643334569999887
Q ss_pred HHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 006571 252 YAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTA 331 (640)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~ 331 (640)
-....+... .-...++++-|.|++..+..+ .+|||||.|||+||.+|.+++++++||||++.||.+.+
T Consensus 424 ~~~~~~~~~-------s~~~~ei~~pl~l~~i~e~~v-----~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR 491 (591)
T COG1245 424 SAIRSAFGS-------SYFKTEIVKPLNLEDLLERPV-----DELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQR 491 (591)
T ss_pred Hhhhhhccc-------chhHHhhcCccchHHHHhccc-----ccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHH
Confidence 554322111 112346777788888777654 68999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEc
Q 006571 332 LRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLG 370 (640)
Q Consensus 332 ~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~ 370 (640)
..+-+.++++... ++|.+++-||..- +--+.||++|.+
T Consensus 492 ~~vakvIRR~~e~~~kta~vVdHDi~~-~dyvsDr~ivF~ 530 (591)
T COG1245 492 IIVAKVIRRFIENNEKTALVVDHDIYM-IDYVSDRLIVFE 530 (591)
T ss_pred HHHHHHHHHHHhhcCceEEEEecceeh-hhhhhceEEEEe
Confidence 9999999999864 8899999999753 445679988875
No 391
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.88 E-value=4.4e-22 Score=216.63 Aligned_cols=204 Identities=21% Similarity=0.341 Sum_probs=156.0
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhc
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (640)
..|+|++|+..-| ..+..+.+|+||+|..|+-+.|.||||||||+|+++|+|. . |..+|.+..-.+.-.
T Consensus 432 n~i~~e~v~l~tP------t~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggL-W-p~~~G~l~k~~~~~~--- 500 (659)
T KOG0060|consen 432 NAIEFEEVSLSTP------TNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGL-W-PSTGGKLTKPTDGGP--- 500 (659)
T ss_pred ceEEeeeeeecCC------CCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcc-c-ccCCCeEEecccCCC---
Confidence 4799999998742 2245678889999999999999999999999999999984 3 346888865433211
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCcccccc------ccCccCCcCCHHHH
Q 006571 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTM------IGGSFVRGVSGGER 301 (640)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~------vg~~~~~~LSGGqr 301 (640)
+.+-||||.|.+--. |.||.+.|+...-.+ ..+...++++.+.|+.++|.|..+.. +--+.-..||+||+
T Consensus 501 -~~lfflPQrPYmt~G-TLRdQvIYP~~~~~~--~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEq 576 (659)
T KOG0060|consen 501 -KDLFFLPQRPYMTLG-TLRDQVIYPLKAEDM--DSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQ 576 (659)
T ss_pred -CceEEecCCCCcccc-chhheeeccCccccc--cccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHH
Confidence 458899999987655 999999987322111 11222344566677777666544322 11122356999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcC
Q 006571 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (640)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~ 371 (640)
||++.||-+.++|++-||||.||++|...+..+.+.+++ .|.|.|-|.|+.+ +.+.=|.++-|+.
T Consensus 577 QRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~---~giT~iSVgHRkS--L~kfHd~~L~~~g 641 (659)
T KOG0060|consen 577 QRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCRE---MGITFISVGHRKS--LWKFHDYVLRMDG 641 (659)
T ss_pred HHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHH---cCCeEEEeccHHH--HHhhhhEEEEecC
Confidence 999999999999999999999999999999999988875 4999999999976 4566688888875
No 392
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.88 E-value=4.8e-23 Score=211.25 Aligned_cols=180 Identities=17% Similarity=0.211 Sum_probs=118.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEe-C-Ch---------hccCcEEEEccCCCC-CCCCCHHH
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP-Y-SK---------SLKSKIGFVTQDDVL-FPHLTVKE 248 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~-~-~~---------~~~~~i~yV~Q~~~l-~~~lTV~E 248 (640)
.++ +++|+||||||||||+++|++.+. + ..|++..++.. + .. ...-.+.|..|++.. .-..++.+
T Consensus 21 ~~~-~~~i~G~NGsGKStll~ai~~~l~-~-~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~ 97 (247)
T cd03275 21 FDR-FTCIIGPNGSGKSNLMDAISFVLG-E-KSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITG 97 (247)
T ss_pred CCC-eEEEECCCCCCHHHHHHHHHHHhC-C-CcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEEC
Confidence 344 999999999999999999998654 2 24655543321 0 00 111223444444221 00112221
Q ss_pred HHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccc---------cccC--------ccCCcCCHHHHHHHHHHHHHh
Q 006571 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDT---------MIGG--------SFVRGVSGGERKRVCIGNEII 311 (640)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t---------~vg~--------~~~~~LSGGqrqRv~IA~aL~ 311 (640)
... ..+.... ....+.++++++.+|+...... .+.+ ..+..||||||||++||++++
T Consensus 98 ~~~---~~~ingk---~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~ 171 (247)
T cd03275 98 GSS---SYRINGK---VVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFA 171 (247)
T ss_pred Cce---EEEECCE---EecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHH
Confidence 110 0011110 1123345678888888532111 1111 123789999999999999998
Q ss_pred hC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcC
Q 006571 312 IN----PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (640)
Q Consensus 312 ~~----P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~ 371 (640)
.+ |+++||||||+|||+..+..+.+.|++++++|.|||++||++ ++.+.||++++|.+
T Consensus 172 ~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~--~~~~~~d~i~~~~~ 233 (247)
T cd03275 172 IHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKE--EFFSKADALVGVYR 233 (247)
T ss_pred HhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCH--HHHhhCCeEEEEEe
Confidence 75 899999999999999999999999999987799999999994 35688999999975
No 393
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=1.7e-22 Score=217.40 Aligned_cols=202 Identities=23% Similarity=0.286 Sum_probs=141.7
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhc
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (640)
..|...|++..| +.+.+|++-++++..|..++|+|+||+|||||||+|+. |.| .+.+..++.
T Consensus 79 ~Di~~~~fdLa~--------G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~--------~~v--~~f~veqE~ 140 (582)
T KOG0062|consen 79 KDIHIDNFDLAY--------GGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN--------GQV--SGFHVEQEV 140 (582)
T ss_pred cceeeeeeeeee--------cchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh--------cCc--CccCchhhe
Confidence 368888888888 57889999999999999999999999999999999994 222 222332232
Q ss_pred cCcEEEEccC-CCCCCCCCHHHHHHHHHhccCCCCccHH-HHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHH
Q 006571 228 KSKIGFVTQD-DVLFPHLTVKETLTYAALLRLPNTLTKQ-QKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (640)
Q Consensus 228 ~~~i~yV~Q~-~~l~~~lTV~Enl~~~~~~~~~~~~~~~-~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (640)
+. -+++-. +.+-.+..+.+-|.--. .+... ..++....+|..+|..+.... ...++||||-|-|++
T Consensus 141 ~g--~~t~~~~~~l~~D~~~~dfl~~e~------~l~~~~~l~ei~~~~L~glGFt~emq~----~pt~slSGGWrMrla 208 (582)
T KOG0062|consen 141 RG--DDTEALQSVLESDTERLDFLAEEK------ELLAGLTLEEIYDKILAGLGFTPEMQL----QPTKSLSGGWRMRLA 208 (582)
T ss_pred ec--cchHHHhhhhhccHHHHHHHHhhh------hhhccchHHHHHHHHHHhCCCCHHHHh----ccccccCcchhhHHH
Confidence 21 122221 12222323333322111 11111 223334447888888654322 345789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeE-EEecChHHH
Q 006571 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL-LYFGKASEA 383 (640)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~i-v~~G~~~~~ 383 (640)
+||||..+|+||||||||+.||..+..-+.+.|+.+ +.|+|+++|| +..+-..|..|+-+++-++ .|.|..++.
T Consensus 209 LARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~---~~T~liVSHD-r~FLn~V~tdIIH~~~~kL~~YkGN~~~F 283 (582)
T KOG0062|consen 209 LARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW---KITSLIVSHD-RNFLNTVCTDIIHLENLKLDYYKGNYSQF 283 (582)
T ss_pred HHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC---CceEEEEecc-HHHHHHHHHHHHHHhhhhhhhhcCcHHHH
Confidence 999999999999999999999999988888888764 4799999999 5556777888888877665 466665543
No 394
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.87 E-value=2e-21 Score=187.84 Aligned_cols=210 Identities=22% Similarity=0.302 Sum_probs=158.8
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (640)
..|++.++.|+|+. ..+++-|+|++++.|....++|.||||||||||+|+|.-. ...|.|.++|++.-.
T Consensus 12 ~aievsgl~f~y~~-------~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhm--v~~~~v~VlgrsaFhDt 82 (291)
T KOG2355|consen 12 FAIEVSGLQFKYKV-------SDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHM--VGGGVVQVLGRSAFHDT 82 (291)
T ss_pred ceEEEeccEEeccc-------CCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCccc--ccCCeEEEcCcCccccc
Confidence 36999999999942 3489999999999999999999999999999999999533 235899999986421
Q ss_pred -------------hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCcc
Q 006571 226 -------------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSF 292 (640)
Q Consensus 226 -------------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~ 292 (640)
++.+.+++-- +-.+..++++.+.| |+... . +.++ -+.+++.+.+.-.. .
T Consensus 83 ~l~~Sgdl~YLGgeW~~~~~~ag-evplq~D~sae~mi-fgV~g-----~-dp~R---re~LI~iLDIdl~W-------R 144 (291)
T KOG2355|consen 83 SLESSGDLSYLGGEWSKTVGIAG-EVPLQGDISAEHMI-FGVGG-----D-DPER---REKLIDILDIDLRW-------R 144 (291)
T ss_pred cccccCceeEecccccccccccc-cccccccccHHHHH-hhccC-----C-ChhH---hhhhhhheeccceE-------E
Confidence 2333333333 22233355665544 44321 1 1233 34455655553211 2
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCcHHHhccCEEEEEcC
Q 006571 293 VRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (640)
Q Consensus 293 ~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~tH~~~~~i~~~~D~i~vL~~ 371 (640)
.+.+|-|||+||.|++.|++.-++|+|||-|--||..++..+++.|++-++ +|.|||..||-... +.....+++.|++
T Consensus 145 mHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDG-Le~Wpthl~yi~~ 223 (291)
T KOG2355|consen 145 MHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDG-LETWPTHLVYIKS 223 (291)
T ss_pred EeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccc-hhhcchhEEEecC
Confidence 357999999999999999999999999999999999999999999999875 48999999999764 6788999999999
Q ss_pred CeEEEecChHHHHH
Q 006571 372 GSLLYFGKASEAMA 385 (640)
Q Consensus 372 G~iv~~G~~~~~~~ 385 (640)
|+++..-+.+++.+
T Consensus 224 Gkl~~~l~~~~i~e 237 (291)
T KOG2355|consen 224 GKLVDNLKYQKIKE 237 (291)
T ss_pred Ceeeeccccchhhh
Confidence 99998666555543
No 395
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=7.9e-22 Score=207.42 Aligned_cols=193 Identities=26% Similarity=0.398 Sum_probs=150.9
Q ss_pred CCeeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh
Q 006571 146 LPIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK 225 (640)
Q Consensus 146 ~~~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~ 225 (640)
.|+.|-++||+|.|+ +.++++++++|-|.=-..+|||||||.||||||++|.|.+. |..|+.. +
T Consensus 583 ~PPvLGlH~VtFgy~-------gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~--P~~GE~R-------K 646 (807)
T KOG0066|consen 583 NPPVLGLHDVTFGYP-------GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLD--PNDGELR-------K 646 (807)
T ss_pred CCCeeecccccccCC-------CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCC--CCcchhh-------c
Confidence 356799999999984 56789999999999999999999999999999999999764 3467643 3
Q ss_pred hccCcEEEEccCC--CCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHH
Q 006571 226 SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (640)
Q Consensus 226 ~~~~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (640)
..|-+||+..|+. .|-..-|.-|.|.-... ++. +.+...|-.+||...++|. .+..||||||-|
T Consensus 647 nhrL~iG~FdQh~~E~L~~Eetp~EyLqr~FN------lpy----q~ARK~LG~fGL~sHAHTi----kikdLSGGQKaR 712 (807)
T KOG0066|consen 647 NHRLRIGWFDQHANEALNGEETPVEYLQRKFN------LPY----QEARKQLGTFGLASHAHTI----KIKDLSGGQKAR 712 (807)
T ss_pred cceeeeechhhhhHHhhccccCHHHHHHHhcC------CCh----HHHHHHhhhhhhhhccceE----eeeecCCcchHH
Confidence 3455699999874 45555677777764322 222 2345678889999888885 467899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCC
Q 006571 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKG 372 (640)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G 372 (640)
|++|.--+..|+||||||||++||.++...+-+.|++. .-.||+++||-.. +.+.--.++|+.+-
T Consensus 713 ValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney---~GgVi~VsHDeRL-i~eT~C~LwVvE~Q 777 (807)
T KOG0066|consen 713 VALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY---NGGVIMVSHDERL-IVETDCNLWVVENQ 777 (807)
T ss_pred HHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc---cCcEEEEecccce-eeecCceEEEEccC
Confidence 99999999999999999999999999988888888765 3489999999543 33333355666553
No 396
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.85 E-value=1.4e-20 Score=188.98 Aligned_cols=81 Identities=19% Similarity=0.224 Sum_probs=68.7
Q ss_pred cCCcCCHHHHHHHHHHHHH----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-C-CEEEEEeCCCCcHHHhccC-
Q 006571 292 FVRGVSGGERKRVCIGNEI----IINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-G-KTVVTTIHQPSSRLFHKFD- 364 (640)
Q Consensus 292 ~~~~LSGGqrqRv~IA~aL----~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g-~TvI~~tH~~~~~i~~~~D- 364 (640)
.+..||||||||+.++++| +.+|+++++||||+|||+.++..+++.|++++++ | .|+|++||++.. ..+.+|
T Consensus 123 ~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~-~~~~~~~ 201 (213)
T cd03277 123 DPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLP-GLNYHEK 201 (213)
T ss_pred chhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhcc-CCcccCc
Confidence 4568999999998877554 5799999999999999999999999999999776 5 589999999754 446665
Q ss_pred -EEEEEcCCe
Q 006571 365 -KLILLGKGS 373 (640)
Q Consensus 365 -~i~vL~~G~ 373 (640)
+|++|++|+
T Consensus 202 ~~v~~l~~g~ 211 (213)
T cd03277 202 MTVLCVYNGP 211 (213)
T ss_pred eEEEEEecCc
Confidence 788888886
No 397
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=1.2e-20 Score=203.26 Aligned_cols=205 Identities=23% Similarity=0.314 Sum_probs=156.6
Q ss_pred CCeeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh
Q 006571 146 LPIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK 225 (640)
Q Consensus 146 ~~~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~ 225 (640)
.++.+++.+|+|.|.. ... +++.++++.++.-+..+++|+||+||||++|++.|.+. +..|.+.+.+
T Consensus 359 ~~p~l~i~~V~f~y~p-----~~y-~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~--~~rgi~~~~~----- 425 (582)
T KOG0062|consen 359 SPPNLRISYVAFEYTP-----SEY-QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLT--PTRGIVGRHP----- 425 (582)
T ss_pred CCCeeEEEeeeccCCC-----cch-hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCC--cccceeeecc-----
Confidence 3557999999998731 112 79999999999999999999999999999999998654 3467766543
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHH
Q 006571 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (640)
Q Consensus 226 ~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (640)
|.+|+|-.|...=+-.+.|.+-- +....+ | ..++ +.++.-+..+||+... ....+.+||||||=||+
T Consensus 426 --r~ri~~f~Qhhvd~l~~~v~~vd-~~~~~~-p-G~~~----ee~r~hl~~~Gl~g~l----a~~si~~LSGGQKsrva 492 (582)
T KOG0062|consen 426 --RLRIKYFAQHHVDFLDKNVNAVD-FMEKSF-P-GKTE----EEIRRHLGSFGLSGEL----ALQSIASLSGGQKSRVA 492 (582)
T ss_pred --cceecchhHhhhhHHHHHhHHHH-HHHHhC-C-CCCH----HHHHHHHHhcCCCchh----hhccccccCCcchhHHH
Confidence 56799999975544344554332 222332 2 2233 3455678889996422 22335789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEE-ecCh
Q 006571 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY-FGKA 380 (640)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~-~G~~ 380 (640)
+|.....+|.+|+|||||+.||-.+-..+.+.|+.. +-.||+|||+. ..+...|+.+.+.++|++.- .|..
T Consensus 493 fA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~GGVv~VSHd~-~fi~~~c~E~Wvve~g~vt~ieg~~ 564 (582)
T KOG0062|consen 493 FAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NGGVVLVSHDE-EFISSLCKELWVVEDGKVTPIEGGI 564 (582)
T ss_pred HHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CCcEEEEECcH-HHHhhcCceeEEEcCCcEEeeeccH
Confidence 999999999999999999999999999988888865 34899999994 45778999999999999853 3443
No 398
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.84 E-value=1.3e-20 Score=187.23 Aligned_cols=153 Identities=23% Similarity=0.215 Sum_probs=110.1
Q ss_pred ceeceEEEEeCCe-EEEEECCCCCcHHHHHHHHH-cCCCCCCccc-EEEECCEeCChhccCcEEEEccCCCCCCCCCHHH
Q 006571 172 ILNGITGSVNPGE-VLALMGPSGSGKTTLLNLLS-GRLMEPTVGG-SITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248 (640)
Q Consensus 172 iL~~vs~~i~~Ge-~~aIvGpsGsGKSTLl~~L~-G~~~~~~~~G-~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~E 248 (640)
-..++|+++.+|+ +++|.|||||||||||++|+ +.+. ...| .+-.. -...++|+.|....+
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~--~~~G~~vp~~-------~~~~~~~~~~~~~~l------- 79 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLM--AQSGLPIPAA-------EGSSLPVFENIFADI------- 79 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHH--HHcCCCcccc-------ccccCcCccEEEEec-------
Confidence 3457899999995 89999999999999999998 1110 0011 00000 001234444432111
Q ss_pred HHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 006571 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 328 (640)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~ 328 (640)
+..+..+ .....+|+||||++.|+++ +.+|+++++||||+|||+
T Consensus 80 ------------------------------g~~~~l~-----~~~s~fs~g~~~~~~i~~~-~~~p~llllDEp~~glD~ 123 (200)
T cd03280 80 ------------------------------GDEQSIE-----QSLSTFSSHMKNIARILQH-ADPDSLVLLDELGSGTDP 123 (200)
T ss_pred ------------------------------Cchhhhh-----cCcchHHHHHHHHHHHHHh-CCCCcEEEEcCCCCCCCH
Confidence 1111111 1124799999999999988 489999999999999999
Q ss_pred HHHHHHH-HHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEec
Q 006571 329 TTALRIV-QMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (640)
Q Consensus 329 ~s~~~i~-~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (640)
.....+. ..++++.+.|.|+|++||+. ++.+.||++++|++|++++.+
T Consensus 124 ~~~~~i~~~~l~~l~~~~~~vi~~tH~~--~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 124 VEGAALAIAILEELLERGALVIATTHYG--ELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEECCHH--HHHHHHhcCCCeEEEEEEEec
Confidence 9999996 46888877789999999983 567899999999999998874
No 399
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.82 E-value=1.4e-19 Score=176.72 Aligned_cols=74 Identities=24% Similarity=0.353 Sum_probs=68.5
Q ss_pred CCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcC
Q 006571 296 VSGGERKRVCIGNEII----INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (640)
Q Consensus 296 LSGGqrqRv~IA~aL~----~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~ 371 (640)
||||||||++||++++ .+|+++++|||+++||+..+..+.+.|+++++.|.|+|+++|++. ....+|+++.+.+
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~--~~~~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKE--MFENADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH--HHhhCCeEEEEEE
Confidence 9999999999999996 699999999999999999999999999999877899999999964 4578999999976
No 400
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.81 E-value=3.7e-20 Score=196.72 Aligned_cols=170 Identities=31% Similarity=0.477 Sum_probs=128.1
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh-------------hc--------c--CcEEEEc
Q 006571 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-------------SL--------K--SKIGFVT 235 (640)
Q Consensus 179 ~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-------------~~--------~--~~i~yV~ 235 (640)
..++|++++|+||||-||||-+|+|+|.+.+ . =|+ +++.|-.+ .+ | .++-||.
T Consensus 96 ~pr~G~V~GilG~NGiGKsTalkILaGel~P-N-LG~--~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd 171 (591)
T COG1245 96 TPRPGKVVGILGPNGIGKSTALKILAGELKP-N-LGR--YEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVD 171 (591)
T ss_pred CCCCCcEEEEEcCCCccHHHHHHHHhCcccc-C-CCC--CCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHH
Confidence 3579999999999999999999999998753 2 232 23322110 01 0 1122332
Q ss_pred cCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCC
Q 006571 236 QDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPS 315 (640)
Q Consensus 236 Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~ 315 (640)
--|..+.. ||.|-|.-. ...-..+++++.++|.+..|..+ ..|||||-||++||.+++++++
T Consensus 172 ~iPk~~KG-~v~elLk~~------------de~g~~devve~l~L~nvl~r~v-----~~LSGGELQr~aIaa~l~rdAD 233 (591)
T COG1245 172 LIPKVVKG-KVGELLKKV------------DERGKFDEVVERLGLENVLDRDV-----SELSGGELQRVAIAAALLRDAD 233 (591)
T ss_pred HHHHHhcc-hHHHHHHhh------------hhcCcHHHHHHHhcchhhhhhhh-----hhcCchHHHHHHHHHHHhccCC
Confidence 23334433 777766421 11235788999999998887654 6899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcC
Q 006571 316 LLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (640)
Q Consensus 316 iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~ 371 (640)
++++|||||-||...+...-+.++++++.+++||++-||+.- +--++|-|.++..
T Consensus 234 vY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLav-LD~lsD~vhI~YG 288 (591)
T COG1245 234 VYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAV-LDYLSDFVHILYG 288 (591)
T ss_pred EEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHH-HHHhhheeEEEec
Confidence 999999999999999999999999999889999999999763 4456898888864
No 401
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.79 E-value=1.6e-19 Score=179.34 Aligned_cols=136 Identities=18% Similarity=0.249 Sum_probs=102.8
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHH
Q 006571 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248 (640)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~E 248 (640)
++.|++|+++.. |++++|+||||||||||+|+|+|... +...|.++.. -.+++|.+.+|+.+|+.|
T Consensus 13 ~~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-------l~~~G~~v~a-----~~~~~q~~~l~~~~~~~d 78 (199)
T cd03283 13 EKRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-------LAQAGAPVCA-----SSFELPPVKIFTSIRVSD 78 (199)
T ss_pred CCeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-------HHHcCCEEec-----CccCcccceEEEeccchh
Confidence 346778887665 79999999999999999999998432 2234444422 136778888999999999
Q ss_pred HHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 006571 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 328 (640)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~ 328 (640)
|+.++.. ....+ ..++.++++.+++ .+|+++++||||+|||+
T Consensus 79 ~l~~~~s------~~~~e-~~~~~~iL~~~~~-------------------------------~~p~llllDEp~~glD~ 120 (199)
T cd03283 79 DLRDGIS------YFYAE-LRRLKEIVEKAKK-------------------------------GEPVLFLLDEIFKGTNS 120 (199)
T ss_pred ccccccC------hHHHH-HHHHHHHHHhccC-------------------------------CCCeEEEEecccCCCCH
Confidence 9987531 11222 2456777776542 79999999999999999
Q ss_pred HHHHHHH-HHHHHHHHCCCEEEEEeCCCC
Q 006571 329 TTALRIV-QMLQDIAEAGKTVVTTIHQPS 356 (640)
Q Consensus 329 ~s~~~i~-~~L~~l~~~g~TvI~~tH~~~ 356 (640)
.....+. ..++.+.+.|.|+|++||++.
T Consensus 121 ~~~~~l~~~ll~~l~~~~~tiiivTH~~~ 149 (199)
T cd03283 121 RERQAASAAVLKFLKNKNTIGIISTHDLE 149 (199)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEcCcHH
Confidence 9988775 468888777899999999965
No 402
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.79 E-value=1.9e-18 Score=212.53 Aligned_cols=200 Identities=24% Similarity=0.380 Sum_probs=144.4
Q ss_pred cceeceEEEEeCCeEEEEECCCCCcHHHHHHHHH-c----CCCC--CCcccEEEECCEeCCh--------------hccC
Q 006571 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLS-G----RLME--PTVGGSITYNDHPYSK--------------SLKS 229 (640)
Q Consensus 171 ~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~-G----~~~~--~~~~G~I~~~G~~~~~--------------~~~~ 229 (640)
.=|+||+.+|+-|.+++|.|.||||||||++-.. - .+.. ....--|.+|-.|+.+ .+|+
T Consensus 1504 nNLk~v~v~iPlg~l~~vTGVSGSGKStLi~~~l~~~l~~~l~~g~~~~~~vi~vdQspIgrt~RS~paTY~g~fd~IR~ 1583 (1809)
T PRK00635 1504 HTIQNLNVSAPLHSLVAISGVSGSGKTSLLLEGFYKQACALIEKGPSVFSEIIFLDSHPQISSQRSDISTYFDIAPSLRN 1583 (1809)
T ss_pred ccCCcceeeccCCcEEEEeCCCCCcHHHHHHHHHHHHHHHHhcccccccCcEEEEeCCCCCCCCCCchhhhhhhHHHHHH
Confidence 3589999999999999999999999999997443 1 0100 0123346777666521 0000
Q ss_pred ----------------c---------------EEEEccCCCCCC--------------------------------CCCH
Q 006571 230 ----------------K---------------IGFVTQDDVLFP--------------------------------HLTV 246 (640)
Q Consensus 230 ----------------~---------------i~yV~Q~~~l~~--------------------------------~lTV 246 (640)
. -|++.=+-.++| .|||
T Consensus 1584 lFA~~~~ak~rg~~~~~FSfN~~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~L~v~~~gk~I~dvL~mtv 1663 (1809)
T PRK00635 1584 FYASLTQAKALNISASMFSTNTKQGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLAQEVVYEGKHFGQLLQTPI 1663 (1809)
T ss_pred HHhcCHHHHHcCCCcccccccCCCCCCCCCccCceEEEecccCCCcccCCCCCCCcCCCHHHHhheeCCCCHHHHhcCCH
Confidence 0 111111111111 3677
Q ss_pred HHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhC---CCEEEEeCCC
Q 006571 247 KETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIIN---PSLLFLDEPT 323 (640)
Q Consensus 247 ~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~---P~iLlLDEPT 323 (640)
.|.+.|... ..+-.+.-+.|.++||.... +| +....|||||.||+-||..|..+ +.+++|||||
T Consensus 1664 ~ea~~~F~~---------~~~i~~~L~~L~~vGLgYl~---LG-q~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt 1730 (1809)
T PRK00635 1664 EEVAETFPF---------LKKIQKPLQALIDNGLGYLP---LG-QNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIA 1730 (1809)
T ss_pred HHHHHHhhc---------cHHHHHHHHHHHHcCCCeee---CC-CcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCC
Confidence 777666421 11233456678888986432 23 44567999999999999999876 7899999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEc------CCeEEEecChHHHHH
Q 006571 324 SGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG------KGSLLYFGKASEAMA 385 (640)
Q Consensus 324 sgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~------~G~iv~~G~~~~~~~ 385 (640)
+||++.....+++.|++|.+.|.|||++.|++. +.+.||.|+-|. .|+|++.|+|+++.+
T Consensus 1731 ~GLh~~d~~~Ll~~l~~L~~~g~tvivieH~~~--~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~ 1796 (1809)
T PRK00635 1731 TSLDNQQKSALLVQLRTLVSLGHSVIYIDHDPA--LLKQADYLIEMGPGSGKTGGKILFSGPPKDISA 1796 (1809)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHH--HHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhh
Confidence 999999999999999999999999999999964 667899999994 479999999999864
No 403
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.79 E-value=4.3e-18 Score=191.65 Aligned_cols=128 Identities=28% Similarity=0.485 Sum_probs=103.4
Q ss_pred CCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCC---CEEEE
Q 006571 243 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINP---SLLFL 319 (640)
Q Consensus 243 ~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P---~iLlL 319 (640)
.|||.|...|.... + .-.+..+.|..+||.-. .+| +....|||||.|||-+|.+|.... -+++|
T Consensus 783 ~MTveEA~~FF~~~------p---~I~rkLqtL~dVGLgYi---~LG-QpatTLSGGEaQRvKLA~EL~k~~tg~TlYiL 849 (935)
T COG0178 783 DMTVEEALEFFEAI------P---KIARKLQTLVDVGLGYI---KLG-QPATTLSGGEAQRVKLAKELSKRSTGKTLYIL 849 (935)
T ss_pred hccHHHHHHHHhcc------h---HHHHHHHHHHHcCcceE---ecC-CccccccchHHHHHHHHHHHhhccCCCeEEEe
Confidence 35666666665321 1 12334456677888532 233 455789999999999999999987 89999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEE------cCCeEEEecChHHHHH
Q 006571 320 DEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEAMA 385 (640)
Q Consensus 320 DEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL------~~G~iv~~G~~~~~~~ 385 (640)
||||+||-.....++++.|.+|.++|.|||+|-|.+. +.+.||.|+=| +.|+|+..|+|+++.+
T Consensus 850 DEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLd--VIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 850 DEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLD--VIKTADWIIDLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccc--eEeecCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence 9999999999999999999999999999999999975 67899999998 3589999999999974
No 404
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.79 E-value=1.7e-19 Score=182.14 Aligned_cols=153 Identities=22% Similarity=0.216 Sum_probs=116.2
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEE-EEccCCCCCCCCCHH
Q 006571 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIG-FVTQDDVLFPHLTVK 247 (640)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~-yV~Q~~~l~~~lTV~ 247 (640)
.+.+.+|+++++.+|++++|.||||+|||||+++++ .. .+..++| |||.+...++
T Consensus 16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~-~~------------------~~la~~g~~vpa~~~~~~----- 71 (222)
T cd03285 16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIG-VI------------------VLMAQIGCFVPCDSADIP----- 71 (222)
T ss_pred CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHH-HH------------------HHHHHhCCCcCcccEEEe-----
Confidence 456899999999999999999999999999999998 21 1122333 5665432221
Q ss_pred HHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHH--hhCCCEEEEeCC---
Q 006571 248 ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEI--IINPSLLFLDEP--- 322 (640)
Q Consensus 248 Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL--~~~P~iLlLDEP--- 322 (640)
.+++++..+++.+.. .+++|.|+++++.+++++ +.+|+++|||||
T Consensus 72 ----------------------~~~~il~~~~l~d~~--------~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~g 121 (222)
T cd03285 72 ----------------------IVDCILARVGASDSQ--------LKGVSTFMAEMLETAAILKSATENSLIIIDELGRG 121 (222)
T ss_pred ----------------------ccceeEeeeccccch--------hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCC
Confidence 022334455665322 257999999999999999 899999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecC
Q 006571 323 TSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (640)
Q Consensus 323 TsgLD~~s~~~i~~~L~~l~~-~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (640)
|++||+.+.... .++.+.+ .|.++|++||+ .++.++||++..+++|++...+.
T Consensus 122 T~~lD~~~~~~~--il~~l~~~~~~~vlisTH~--~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 122 TSTYDGFGLAWA--IAEYIATQIKCFCLFATHF--HELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred CChHHHHHHHHH--HHHHHHhcCCCeEEEEech--HHHHHHhhcCCCeEEEEEEEEEe
Confidence 999999987543 3344443 48899999996 45788999999999999987764
No 405
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.79 E-value=3.4e-19 Score=191.80 Aligned_cols=185 Identities=22% Similarity=0.359 Sum_probs=133.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhcc
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~ 228 (640)
.|.++||-.-- + ....+...++|.|+||--+.|.||||||||+|+++|.|. . |...|.... ..+
T Consensus 481 gI~lenIpvIt------P-~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggL-W-Pvy~g~L~~-------P~~ 544 (728)
T KOG0064|consen 481 GIILENIPVIT------P-AGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGL-W-PVYNGLLSI-------PRP 544 (728)
T ss_pred ceEEecCceec------c-CcceeecceeEEecCCceEEEECCCCccHHHHHHHHhcc-C-cccCCeeec-------CCC
Confidence 37777776542 2 234588999999999999999999999999999999994 3 333343221 123
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhcc--CCCCccHHHHHHHHHHHHHHcCCCccccccccC----ccCCcCCHHHHH
Q 006571 229 SKIGFVTQDDVLFPHLTVKETLTYAALLR--LPNTLTKQQKEKRAIDVINELGLERCQDTMIGG----SFVRGVSGGERK 302 (640)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~--~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~----~~~~~LSGGqrq 302 (640)
.++-|+||.|.+- .-|.+|.+-|....- ..++.. ++....+|+.+.|++......|= ..-.-|||||||
T Consensus 545 ~~mFYIPQRPYms-~gtlRDQIIYPdS~e~~~~kg~~----d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQ 619 (728)
T KOG0064|consen 545 NNIFYIPQRPYMS-GGTLRDQIIYPDSSEQMKRKGYT----DQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQ 619 (728)
T ss_pred cceEeccCCCccC-cCcccceeecCCcHHHHHhcCCC----HHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHH
Confidence 4599999999876 458888887642100 001112 22345555655555443332221 112359999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCc
Q 006571 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSS 357 (640)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~ 357 (640)
|+++||.+.++|+.-+|||.||+..+..+..+.+..++ .|.+.|-++|+|+-
T Consensus 620 R~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~---~gi~llsithrpsl 671 (728)
T KOG0064|consen 620 RMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKD---AGISLLSITHRPSL 671 (728)
T ss_pred HHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHh---cCceEEEeecCccH
Confidence 99999999999999999999999999999999988765 49999999999873
No 406
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=1.7e-18 Score=180.51 Aligned_cols=76 Identities=24% Similarity=0.362 Sum_probs=68.8
Q ss_pred cCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEc
Q 006571 295 GVSGGERKRVCIGNEIII----NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (640)
Q Consensus 295 ~LSGGqrqRv~IA~aL~~----~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~ 370 (640)
.|||||+||++||++++. +|+++||||||++||+.....+.+.|+++.+ +.|+|+++|++. +...||++++|.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~~tii~isH~~~--~~~~~d~~~~l~ 246 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-SHQVLCITHLPQ--VAAMADNHFLVE 246 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEechHH--HHHhcCcEEEEE
Confidence 499999999999997654 9999999999999999999999999999865 789999999975 458999999998
Q ss_pred CCe
Q 006571 371 KGS 373 (640)
Q Consensus 371 ~G~ 373 (640)
+|.
T Consensus 247 ~~~ 249 (276)
T cd03241 247 KEV 249 (276)
T ss_pred Eec
Confidence 864
No 407
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.78 E-value=1.1e-18 Score=183.68 Aligned_cols=205 Identities=26% Similarity=0.410 Sum_probs=149.3
Q ss_pred eEEEEeEEEEEeec----cc--------------cccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-
Q 006571 149 YLKFTDVTYKVILK----GM--------------TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME- 209 (640)
Q Consensus 149 ~l~~~~vs~~~~~~----~~--------------~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~- 209 (640)
.+.|++++..+.+. +. .......+|+|||++|+||++++|+|+|||||||||++|.|....
T Consensus 357 p~~~~~v~k~faS~ld~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~ 436 (593)
T COG2401 357 PIKFKNVTKTFASELDIKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGR 436 (593)
T ss_pred ccccceeeeeeeeeeecccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcc
Confidence 47788887776431 00 112346799999999999999999999999999999999995421
Q ss_pred -----CCcccEEEECCEeCChhccCcEEEEccCC-CCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCcc
Q 006571 210 -----PTVGGSITYNDHPYSKSLKSKIGFVTQDD-VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC 283 (640)
Q Consensus 210 -----~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~-~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 283 (640)
.|++|.|.+--.. ..+.+|-+. .-|..-|+.|.+.- .+.+ -..+.++|...||.+-
T Consensus 437 ~ee~y~p~sg~v~vp~nt-------~~a~iPge~Ep~f~~~tilehl~s-----~tGD------~~~AveILnraGlsDA 498 (593)
T COG2401 437 GEEKYRPDSGKVEVPKNT-------VSALIPGEYEPEFGEVTILEHLRS-----KTGD------LNAAVEILNRAGLSDA 498 (593)
T ss_pred cccccCCCCCceeccccc-------hhhccCcccccccCchhHHHHHhh-----ccCc------hhHHHHHHHhhccchh
Confidence 1346766543221 124455432 22335577777642 1111 1235678888898753
Q ss_pred ccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhc
Q 006571 284 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHK 362 (640)
Q Consensus 284 ~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~ 362 (640)
.- -....+.||-|||.|+.||.++...|.+++.||--+.||+.++..+.+-|.+++++ |.|++++||+|.- .-.+
T Consensus 499 vl---yRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv-~~AL 574 (593)
T COG2401 499 VL---YRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEV-GNAL 574 (593)
T ss_pred hh---hhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHH-Hhcc
Confidence 21 12345789999999999999999999999999999999999999999999999864 9999999999753 3344
Q ss_pred -cCEEEEEcCCeEE
Q 006571 363 -FDKLILLGKGSLL 375 (640)
Q Consensus 363 -~D~i~vL~~G~iv 375 (640)
-|+++++.=|.+.
T Consensus 575 ~PD~li~vgYg~v~ 588 (593)
T COG2401 575 RPDTLILVGYGKVP 588 (593)
T ss_pred CCceeEEeeccccc
Confidence 4999988777653
No 408
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.76 E-value=3.3e-18 Score=164.39 Aligned_cols=75 Identities=28% Similarity=0.413 Sum_probs=67.9
Q ss_pred cCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEc
Q 006571 295 GVSGGERKRVCIGNEIII----NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (640)
Q Consensus 295 ~LSGGqrqRv~IA~aL~~----~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~ 370 (640)
+||+||+||++||++|.. +|+++|+|||++|+|+.....+.+.+.++.+++.++|++||++. +...+|+++.|+
T Consensus 77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~--~~~~~d~~~~l~ 154 (162)
T cd03227 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPE--LAELADKLIHIK 154 (162)
T ss_pred eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHH--HHHhhhhEEEEE
Confidence 499999999999999987 78999999999999999999999999998666889999999964 457799999986
Q ss_pred C
Q 006571 371 K 371 (640)
Q Consensus 371 ~ 371 (640)
.
T Consensus 155 ~ 155 (162)
T cd03227 155 K 155 (162)
T ss_pred E
Confidence 4
No 409
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.73 E-value=1.9e-17 Score=195.95 Aligned_cols=136 Identities=23% Similarity=0.411 Sum_probs=108.3
Q ss_pred CCCCHHHHHHHHHhccCCCC---cc---HHHHHHHHHHHHHHcCCCcc-ccccccCccCCcCCHHHHHHHHHHHHHhhCC
Q 006571 242 PHLTVKETLTYAALLRLPNT---LT---KQQKEKRAIDVINELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNEIIINP 314 (640)
Q Consensus 242 ~~lTV~Enl~~~~~~~~~~~---~~---~~~~~~~v~~~l~~lgL~~~-~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P 314 (640)
..+||.|.+.|.-.+..+.. .. -.+..++++ .++.+||.+. .|+ .+..|||||||||.||++|..+|
T Consensus 435 ~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~l~l~r-----~~~~LSgGE~QRv~LA~aL~~~~ 508 (943)
T PRK00349 435 SELSIGEALEFFENLKLSEQEAKIAEPILKEIRERLK-FLVDVGLDYLTLSR-----SAGTLSGGEAQRIRLATQIGSGL 508 (943)
T ss_pred hcCcHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH-HhhccccCCCCCCC-----chhhCCHHHHHHHHHHHHHhhCC
Confidence 36899999998544322110 00 012233443 6778888754 454 35689999999999999999997
Q ss_pred --CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEE------cCCeEEEecChHHHHH
Q 006571 315 --SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEAMA 385 (640)
Q Consensus 315 --~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL------~~G~iv~~G~~~~~~~ 385 (640)
++++|||||+|||+.....+++.|+++++.|.|||+++|++.. + ..||+|++| ++|++++.|+++++..
T Consensus 509 ~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~-i-~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~~ 585 (943)
T PRK00349 509 TGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDT-I-RAADYIVDIGPGAGVHGGEVVASGTPEEIMK 585 (943)
T ss_pred CCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-H-HhCCEEEEeccccCCCCCEEeeccCHHHHhc
Confidence 9999999999999999999999999998889999999999763 4 569999999 9999999999998743
No 410
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.72 E-value=3.4e-17 Score=193.59 Aligned_cols=134 Identities=24% Similarity=0.401 Sum_probs=105.5
Q ss_pred CCCHHHHHHHHHhccCCCCccH------HHHHHHHHHHHHHcCCCcc-ccccccCccCCcCCHHHHHHHHHHHHHhhCC-
Q 006571 243 HLTVKETLTYAALLRLPNTLTK------QQKEKRAIDVINELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNEIIINP- 314 (640)
Q Consensus 243 ~lTV~Enl~~~~~~~~~~~~~~------~~~~~~v~~~l~~lgL~~~-~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P- 314 (640)
.|||.|.+.|...+..+..... .+..+++ +.+..+||... .+ +.+.+|||||+|||.||++|..+|
T Consensus 434 ~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~rl-~~L~~vgL~~l~l~-----r~~~tLSGGE~QRv~LA~aL~~~~~ 507 (924)
T TIGR00630 434 ELSIREAHEFFNQLDLTPEEKKIAEEILKEIKERL-GFLIDVGLDYLTLS-----RAAGTLSGGEAQRIRLATQIGSGLT 507 (924)
T ss_pred cCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HhHhhccccccccC-----CCcCcCCHHHHHHHHHHHHHhhCCC
Confidence 6899999988765432210000 0111122 33566787543 33 345789999999999999999986
Q ss_pred -CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEE------cCCeEEEecChHHHH
Q 006571 315 -SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEAM 384 (640)
Q Consensus 315 -~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL------~~G~iv~~G~~~~~~ 384 (640)
+++||||||+|||+.....+++.|+++.++|.|||+++|++. .+ ..||+|++| ++|+|++.|+++++.
T Consensus 508 ~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~-~i-~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~ 582 (924)
T TIGR00630 508 GVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEE-TI-RAADYVIDIGPGAGIHGGEVVASGTPEEIL 582 (924)
T ss_pred CcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HH-hhCCEEEEecccccCCCCEEeeccCHHHHh
Confidence 899999999999999999999999999888999999999965 34 589999999 899999999998874
No 411
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=2.7e-18 Score=181.02 Aligned_cols=214 Identities=25% Similarity=0.359 Sum_probs=150.5
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (640)
..|.++|.+.+. ..+.++.|.|++|--|..+++|||||-||||||+.|+.|-..-|..=.|++..+.+-.
T Consensus 263 ~DIKiEnF~ISA--------~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~ 334 (807)
T KOG0066|consen 263 MDIKIENFDISA--------QGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADS 334 (807)
T ss_pred ccceeeeeeeec--------ccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecC
Confidence 368888888775 4577999999999999999999999999999999999875432223345655544310
Q ss_pred ------hc---cCcEEEEccCCCC-----CCCCCHHHHHHHH-HhccCCCCccHHHHHHHHHHHHHHcCCCccccccccC
Q 006571 226 ------SL---KSKIGFVTQDDVL-----FPHLTVKETLTYA-ALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGG 290 (640)
Q Consensus 226 ------~~---~~~i~yV~Q~~~l-----~~~lTV~Enl~~~-~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~ 290 (640)
-+ .++..++..+..| -...|+.|-+.-. ..+|- +-....+.++..+|.-+|.+.-.. +
T Consensus 335 t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELra---iGA~sAEarARRILAGLGFskEMQ----~ 407 (807)
T KOG0066|consen 335 TSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRA---IGADSAEARARRILAGLGFSKEMQ----E 407 (807)
T ss_pred cHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHH---hccccchhHHHHHHhhcCCChhHh----c
Confidence 00 1111221111111 1234666665422 22221 112223456778888888864332 2
Q ss_pred ccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEc
Q 006571 291 SFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (640)
Q Consensus 291 ~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~ 370 (640)
++...+|||-|-||++||||...|-+|.|||||+.||..+..-+-+.|+.+. +|.++++||-. .+-..|..|+.|+
T Consensus 408 rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk---KTLLIVSHDQg-FLD~VCtdIIHLD 483 (807)
T KOG0066|consen 408 RPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK---KTLLIVSHDQG-FLDSVCTDIIHLD 483 (807)
T ss_pred CCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh---heeEEEecccc-hHHHHHHHHhhhh
Confidence 3456799999999999999999999999999999999999888888887764 59999999965 4778899999999
Q ss_pred CCeEE-EecCh
Q 006571 371 KGSLL-YFGKA 380 (640)
Q Consensus 371 ~G~iv-~~G~~ 380 (640)
+-++- |.|..
T Consensus 484 ~qkLhyYrGNY 494 (807)
T KOG0066|consen 484 NQKLHYYRGNY 494 (807)
T ss_pred hhhhhhhcchH
Confidence 88874 45654
No 412
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.72 E-value=1.1e-16 Score=166.49 Aligned_cols=77 Identities=14% Similarity=0.207 Sum_probs=62.3
Q ss_pred CCcCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhcc
Q 006571 293 VRGVSGGERKRVCIGNEII---------INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKF 363 (640)
Q Consensus 293 ~~~LSGGqrqRv~IA~aL~---------~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~ 363 (640)
..-+|+||||+++||++|+ .+|++++|||||++||+..+..+.+.|+++ +.+ ++++|+.. .+...|
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~---~q~-ii~~~~~~-~~~~~~ 255 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR---VQT-FVTTTDLA-DFDALW 255 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC---CCE-EEEeCCch-hccchh
Confidence 3458999999999999985 799999999999999999999999999765 334 45555433 345566
Q ss_pred ---CEEEEEcCCeE
Q 006571 364 ---DKLILLGKGSL 374 (640)
Q Consensus 364 ---D~i~vL~~G~i 374 (640)
++++.+++|++
T Consensus 256 ~~~~~i~~l~~g~i 269 (270)
T cd03242 256 LRRAQIFRVDAGTL 269 (270)
T ss_pred ccCccEEEEeCcEE
Confidence 78999999986
No 413
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.71 E-value=3.7e-17 Score=162.62 Aligned_cols=155 Identities=15% Similarity=0.124 Sum_probs=105.4
Q ss_pred eEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHh
Q 006571 176 ITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAAL 255 (640)
Q Consensus 176 vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~ 255 (640)
.++++.+|++++|+|||||||||||++|++.... ...|.. . ...+..++|..|....+ ...+++
T Consensus 22 ~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~-~~~g~~------~-~~~~~~i~~~dqi~~~~---~~~d~i----- 85 (202)
T cd03243 22 NDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLL-AQIGCF------V-PAESASIPLVDRIFTRI---GAEDSI----- 85 (202)
T ss_pred eeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHH-HHcCCC------c-cccccccCCcCEEEEEe---cCcccc-----
Confidence 4566668999999999999999999999953211 112211 1 01122344433322111 111110
Q ss_pred ccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 006571 256 LRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIV 335 (640)
Q Consensus 256 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~ 335 (640)
+ .....++++++| +..+.+++.+|+++|+||||+|||+.....+.
T Consensus 86 -----------------------------~-----~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~ 130 (202)
T cd03243 86 -----------------------------S-----DGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIA 130 (202)
T ss_pred -----------------------------c-----CCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHH
Confidence 0 012346666655 77777888999999999999999999888776
Q ss_pred H-HHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHH
Q 006571 336 Q-MLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (640)
Q Consensus 336 ~-~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (640)
. .++.+.+.+.++|++||++ ++.+.+|++..++.|++...+...++
T Consensus 131 ~~ll~~l~~~~~~vi~~tH~~--~~~~~~~~~~~l~~~~~~~~~~~~~~ 177 (202)
T cd03243 131 YAVLEHLLEKGCRTLFATHFH--ELADLPEQVPGVKNLHMEELITTGGL 177 (202)
T ss_pred HHHHHHHHhcCCeEEEECChH--HHHHHhhcCCCeEEEEEEEEecCCee
Confidence 5 5666766789999999985 46778999999999999988865443
No 414
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.66 E-value=1.9e-16 Score=157.92 Aligned_cols=136 Identities=21% Similarity=0.244 Sum_probs=99.5
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEE-EEccCCCCCCCCCHH
Q 006571 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIG-FVTQDDVLFPHLTVK 247 (640)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~-yV~Q~~~l~~~lTV~ 247 (640)
++.+.+|+++++++|++++|+||||+||||++++|++... ..++| +| |..++.+++.
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~-------------------la~~G~~v---pa~~~~l~~~ 72 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAI-------------------MAQIGCFV---PAEYATLPIF 72 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHH-------------------HHHcCCCc---chhhcCccCh
Confidence 4579999999999999999999999999999999987321 11222 33 3344566777
Q ss_pred HHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 006571 248 ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 327 (640)
Q Consensus 248 Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD 327 (640)
|+|... ++..+..+. ..+.+|+|++|+ ..+.+++.+|++++||||++|+|
T Consensus 73 d~I~~~------------------------~~~~d~~~~-----~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~ 122 (204)
T cd03282 73 NRLLSR------------------------LSNDDSMER-----NLSTFASEMSET-AYILDYADGDSLVLIDELGRGTS 122 (204)
T ss_pred hheeEe------------------------cCCccccch-----hhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCC
Confidence 776421 122211111 235799999975 56667889999999999999999
Q ss_pred HHHHHHH-HHHHHHHHHCCCEEEEEeCCCC
Q 006571 328 STTALRI-VQMLQDIAEAGKTVVTTIHQPS 356 (640)
Q Consensus 328 ~~s~~~i-~~~L~~l~~~g~TvI~~tH~~~ 356 (640)
+.....+ ...++.+.+.|.++|++||+..
T Consensus 123 ~~~~~~l~~~il~~l~~~~~~~i~~TH~~~ 152 (204)
T cd03282 123 SADGFAISLAILECLIKKESTVFFATHFRD 152 (204)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEECChHH
Confidence 9776655 4567777777999999999853
No 415
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.64 E-value=6.6e-16 Score=155.44 Aligned_cols=160 Identities=19% Similarity=0.154 Sum_probs=110.3
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHH
Q 006571 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248 (640)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~E 248 (640)
++.+.+|++++.++ ++++|.||||||||||||++++.... |+ .|..+.. .+..++++.| +|+.+++.|
T Consensus 17 ~~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l----~~---~g~~vp~-~~~~i~~~~~---i~~~~~~~~ 84 (216)
T cd03284 17 EPFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL----AQ---IGSFVPA-SKAEIGVVDR---IFTRIGASD 84 (216)
T ss_pred CceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH----hc---cCCeecc-ccceecceee---EeccCCchh
Confidence 34689999999988 99999999999999999999863321 11 1222221 1356777765 567777777
Q ss_pred HHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCC---CCC
Q 006571 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP---TSG 325 (640)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEP---Tsg 325 (640)
++..+.. .+ ..|.++++-+...+.+|++++|||| |++
T Consensus 85 ~ls~g~s---------------------------------------~f-~~e~~~l~~~l~~~~~~~llllDEp~~gt~~ 124 (216)
T cd03284 85 DLAGGRS---------------------------------------TF-MVEMVETANILNNATERSLVLLDEIGRGTST 124 (216)
T ss_pred hhccCcc---------------------------------------hH-HHHHHHHHHHHHhCCCCeEEEEecCCCCCCh
Confidence 7754310 00 1133344444444679999999999 888
Q ss_pred CCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHH
Q 006571 326 LDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (640)
Q Consensus 326 LD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (640)
+|..+. ....++.+.+. +.|+|++||+. ++.+++|++.-+++|++...+..+++.
T Consensus 125 lD~~~~--~~~il~~l~~~~~~~vi~~TH~~--~l~~l~~~~~~v~~~~~~~~~~~~~l~ 180 (216)
T cd03284 125 YDGLSI--AWAIVEYLHEKIGAKTLFATHYH--ELTELEGKLPRVKNFHVAVKEKGGGVV 180 (216)
T ss_pred HHHHHH--HHHHHHHHHhccCCcEEEEeCcH--HHHHHhhcCCCeEEEEEEEEeeCCeEE
Confidence 998652 23344555555 88999999994 467889988888899988877766653
No 416
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.60 E-value=3.5e-15 Score=154.67 Aligned_cols=139 Identities=19% Similarity=0.235 Sum_probs=96.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC-----hhccCcEEEEccCCCCCCCCCHHHHHHHHHhccC
Q 006571 184 EVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRL 258 (640)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~-----~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~ 258 (640)
.-++|+||||||||||+++|+|.+. +.+|+|.++|+++. .++...+++++|++ +.+.++|.||..-
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~--~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~~~k------ 182 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS--TGISQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDGCPK------ 182 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC--CCCceEEECCEEeecchhHHHHHHHhccccccc-ccccccccccchH------
Confidence 6789999999999999999998664 45899999999874 23445677888865 3344555543210
Q ss_pred CCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 006571 259 PNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 338 (640)
Q Consensus 259 ~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L 338 (640)
. .|+ .......+|+++++|||++ ...+...+
T Consensus 183 ------~--------------------------------~~~-----~~~i~~~~P~villDE~~~------~e~~~~l~ 213 (270)
T TIGR02858 183 ------A--------------------------------EGM-----MMLIRSMSPDVIVVDEIGR------EEDVEALL 213 (270)
T ss_pred ------H--------------------------------HHH-----HHHHHhCCCCEEEEeCCCc------HHHHHHHH
Confidence 0 011 2222336999999999974 23344455
Q ss_pred HHHHHCCCEEEEEeCCCCcH-H-----------HhccCEEEEEcCCeEEEecChHHH
Q 006571 339 QDIAEAGKTVVTTIHQPSSR-L-----------FHKFDKLILLGKGSLLYFGKASEA 383 (640)
Q Consensus 339 ~~l~~~g~TvI~~tH~~~~~-i-----------~~~~D~i~vL~~G~iv~~G~~~~~ 383 (640)
+.+ +.|.|+|+++|++..+ + ...|||+++|++|+ ..|+++++
T Consensus 214 ~~~-~~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i 267 (270)
T TIGR02858 214 EAL-HAGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAV 267 (270)
T ss_pred HHH-hCCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeec
Confidence 554 3699999999985431 2 25689999999887 66666554
No 417
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.56 E-value=1.6e-14 Score=152.87 Aligned_cols=178 Identities=26% Similarity=0.368 Sum_probs=133.5
Q ss_pred cccceeceEEEEeCC-----eEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCC
Q 006571 169 EKDILNGITGSVNPG-----EVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPH 243 (640)
Q Consensus 169 ~~~iL~~vs~~i~~G-----e~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~ 243 (640)
.+.-+-+..+.|+.| |++..+|.||.|||||+++++|++. |...|+|-. -.++|=||.-.-=..
T Consensus 348 m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~-pd~~~e~p~----------lnVSykpqkispK~~ 416 (592)
T KOG0063|consen 348 MKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLK-PDEGGEIPV----------LNVSYKPQKISPKRE 416 (592)
T ss_pred ceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCC-CCccCcccc----------cceeccccccCcccc
Confidence 455677888888887 5789999999999999999999765 444454421 247788886544334
Q ss_pred CCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 006571 244 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 323 (640)
Q Consensus 244 lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPT 323 (640)
-||++.+.--.+. .-....-+.++++-|.+++..|.. +.+|||||.|||+||..|=..+++++.|||.
T Consensus 417 ~tvR~ll~~kIr~-------ay~~pqF~~dvmkpL~ie~i~dqe-----vq~lSggelQRval~KOGGKpAdvYliDEps 484 (592)
T KOG0063|consen 417 GTVRQLLHTKIRD-------AYMHPQFVNDVMKPLQIENIIDQE-----VQGLSGGELQRVALALCLGKPADVYLIDEPS 484 (592)
T ss_pred chHHHHHHHHhHh-------hhcCHHHHHhhhhhhhHHHHHhHH-----hhcCCchhhHHHHHHHhcCCCCceEEecCch
Confidence 5898877532110 001123466777777777766654 4689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHH-HCCCEEEEEeCCCCcHHHhccCEEEEEc
Q 006571 324 SGLDSTTALRIVQMLQDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (640)
Q Consensus 324 sgLD~~s~~~i~~~L~~l~-~~g~TvI~~tH~~~~~i~~~~D~i~vL~ 370 (640)
+-||++.+...-..+++.. +.++|-.++-||..-.. -++||+++.+
T Consensus 485 AylDSeQRi~AskvikRfilhakktafvVEhdfImaT-Yladrvivf~ 531 (592)
T KOG0063|consen 485 AYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMAT-YLADRVIVFE 531 (592)
T ss_pred hhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHH-hhcceeEEEe
Confidence 9999999988888888864 55889999999965432 4689987764
No 418
>PRK00064 recF recombination protein F; Reviewed
Probab=99.49 E-value=9.9e-13 Score=142.31 Aligned_cols=78 Identities=21% Similarity=0.287 Sum_probs=65.3
Q ss_pred CCcCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhc-
Q 006571 293 VRGVSGGERKRVCIGNEII---------INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHK- 362 (640)
Q Consensus 293 ~~~LSGGqrqRv~IA~aL~---------~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~- 362 (640)
...+|+||+|++.||+.|+ .+|+|++||||+++||+..+..+++.+.++ +..+++++|++.. +...
T Consensus 271 ~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~~qv~it~~~~~~-~~~~~ 346 (361)
T PRK00064 271 ADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---GAQVFITTTDLED-LADLL 346 (361)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---CCEEEEEcCChhh-hhhhh
Confidence 3569999999999999885 799999999999999999999999988754 4578999998543 3344
Q ss_pred -cCEEEEEcCCeE
Q 006571 363 -FDKLILLGKGSL 374 (640)
Q Consensus 363 -~D~i~vL~~G~i 374 (640)
.++++.+++|++
T Consensus 347 ~~~~i~~v~~G~i 359 (361)
T PRK00064 347 ENAKIFHVEQGKI 359 (361)
T ss_pred ccCcEEEEeCCEE
Confidence 357999999987
No 419
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.48 E-value=1.8e-14 Score=141.47 Aligned_cols=80 Identities=18% Similarity=0.115 Sum_probs=57.2
Q ss_pred CcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcC
Q 006571 294 RGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIV-QMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGK 371 (640)
Q Consensus 294 ~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~-~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~ 371 (640)
..+|+|++|...+.+ .+.+|+++++|||++|+|+.....+. ..++.+.++ +.++|++||++ ++.+.+|+.--+.+
T Consensus 60 s~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~--~l~~~~~~~~~v~~ 136 (185)
T smart00534 60 STFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYH--ELTKLADEHPGVRN 136 (185)
T ss_pred cHHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHHHhhcCccceE
Confidence 468888776333332 23499999999999999999877764 556777764 88999999996 46777875333444
Q ss_pred CeEEE
Q 006571 372 GSLLY 376 (640)
Q Consensus 372 G~iv~ 376 (640)
++...
T Consensus 137 ~~~~~ 141 (185)
T smart00534 137 LHMSA 141 (185)
T ss_pred EEEEE
Confidence 44433
No 420
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.45 E-value=1e-13 Score=123.48 Aligned_cols=73 Identities=19% Similarity=0.120 Sum_probs=61.4
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hccCcEEEEccCCCCCCCCC
Q 006571 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLT 245 (640)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~i~yV~Q~~~l~~~lT 245 (640)
+.+|+++++++++|++++|+||||||||||++++. +|++.++|.++.. ..++.++|++|+ +|+ .|
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~--------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~-~t 70 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI--------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLE-IR 70 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh--------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cch-hh
Confidence 46899999999999999999999999999999986 5889999998742 345557778777 554 49
Q ss_pred HHHHHHHH
Q 006571 246 VKETLTYA 253 (640)
Q Consensus 246 V~Enl~~~ 253 (640)
++|||.++
T Consensus 71 i~~Ni~~~ 78 (107)
T cd00820 71 LRLNIFLI 78 (107)
T ss_pred HHhhceee
Confidence 99999873
No 421
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.43 E-value=8.7e-13 Score=132.56 Aligned_cols=133 Identities=17% Similarity=0.210 Sum_probs=87.1
Q ss_pred ceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCC-CCCHHHHH
Q 006571 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFP-HLTVKETL 250 (640)
Q Consensus 172 iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~-~lTV~Enl 250 (640)
|-+|+++.=..+.+++|.||||+|||||||.++..... ...|...... ...++|..|....+. ..++.++
T Consensus 18 vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~-------~~~~~~~d~i~~~l~~~~si~~~- 88 (213)
T cd03281 18 VPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD-------SATIGLVDKIFTRMSSRESVSSG- 88 (213)
T ss_pred EcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC-------CcEEeeeeeeeeeeCCccChhhc-
Confidence 44555543222389999999999999999999832111 1235433221 234777777532221 1111111
Q ss_pred HHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 006571 251 TYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTT 330 (640)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s 330 (640)
++.. .-|-||++++++++.+|+++|||||++|+|+..
T Consensus 89 -----------------------------~S~f--------------~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~ 125 (213)
T cd03281 89 -----------------------------QSAF--------------MIDLYQVSKALRLATRRSLVLIDEFGKGTDTED 125 (213)
T ss_pred -----------------------------cchH--------------HHHHHHHHHHHHhCCCCcEEEeccccCCCCHHH
Confidence 1100 237799999999999999999999999999976
Q ss_pred HHHH-HHHHHHHHHC---CCEEEEEeCCCC
Q 006571 331 ALRI-VQMLQDIAEA---GKTVVTTIHQPS 356 (640)
Q Consensus 331 ~~~i-~~~L~~l~~~---g~TvI~~tH~~~ 356 (640)
...+ ...++++.+. +.++|++||++.
T Consensus 126 ~~~~~~ail~~l~~~~~~~~~vli~TH~~~ 155 (213)
T cd03281 126 GAGLLIATIEHLLKRGPECPRVIVSTHFHE 155 (213)
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEEEcChHH
Confidence 5444 5688888764 248999999964
No 422
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.42 E-value=1.6e-12 Score=130.60 Aligned_cols=73 Identities=29% Similarity=0.488 Sum_probs=56.8
Q ss_pred cCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEc
Q 006571 295 GVSGGERKRVCIGNEII----INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (640)
Q Consensus 295 ~LSGGqrqRv~IA~aL~----~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~ 370 (640)
.||||||.+++||--|+ .+.++++||||.++||...+..+.++|+++.+ +.-+|++||++ .++..+|+.+.+.
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~-~~Q~ii~Th~~--~~~~~a~~~~~v~ 212 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK-QSQFIITTHNP--EMFEDADKLIGVT 212 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT-TSEEEEE-S-H--HHHTT-SEEEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc--ccccccccccccc
Confidence 69999999999987663 47789999999999999999999999999864 46799999995 4688899887664
No 423
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.41 E-value=2.9e-13 Score=158.65 Aligned_cols=131 Identities=20% Similarity=0.238 Sum_probs=91.3
Q ss_pred ceEEEEeCC-eEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCC-CCCCCCHHHHHHH
Q 006571 175 GITGSVNPG-EVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDV-LFPHLTVKETLTY 252 (640)
Q Consensus 175 ~vs~~i~~G-e~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~-l~~~lTV~Enl~~ 252 (640)
.+|+.+.+| ++++|.||||+|||||||+|+|.... ...| .+||.... .+ .+.+.+..
T Consensus 313 p~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~-aq~G-----------------~~Vpa~~~~~~---~~~d~i~~ 371 (771)
T TIGR01069 313 PFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALM-FQSG-----------------IPIPANEHSEI---PYFEEIFA 371 (771)
T ss_pred eceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHH-HHhC-----------------CCccCCccccc---cchhheee
Confidence 378888888 99999999999999999999985211 1122 13333321 11 11111110
Q ss_pred HHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 006571 253 AALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTAL 332 (640)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~ 332 (640)
.+... + .+. .....+|+|+++++.|++.+ .+|+++|||||++|+|+....
T Consensus 372 --------~i~~~---~---si~---------------~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ 421 (771)
T TIGR01069 372 --------DIGDE---Q---SIE---------------QNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGS 421 (771)
T ss_pred --------ecChH---h---HHh---------------hhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHH
Confidence 00000 0 011 01257999999999998876 899999999999999999999
Q ss_pred HH-HHHHHHHHHCCCEEEEEeCCCC
Q 006571 333 RI-VQMLQDIAEAGKTVVTTIHQPS 356 (640)
Q Consensus 333 ~i-~~~L~~l~~~g~TvI~~tH~~~ 356 (640)
.+ ...++.+.+.|.++|++||+..
T Consensus 422 ala~aiLe~l~~~g~~viitTH~~e 446 (771)
T TIGR01069 422 ALAISILEYLLKQNAQVLITTHYKE 446 (771)
T ss_pred HHHHHHHHHHHhcCCEEEEECChHH
Confidence 88 5778888878999999999954
No 424
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.39 E-value=1.2e-12 Score=134.32 Aligned_cols=174 Identities=16% Similarity=0.210 Sum_probs=105.2
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEEC--CEe-CC-hhccC---cEEEEccCCCCCCCCCHHHHH
Q 006571 178 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN--DHP-YS-KSLKS---KIGFVTQDDVLFPHLTVKETL 250 (640)
Q Consensus 178 ~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~--G~~-~~-~~~~~---~i~yV~Q~~~l~~~lTV~Enl 250 (640)
+.+.+||.++|+||+|+|||||++.|.+..........+++- +.+ .. .++.+ .+-++.+-+. +..+.+
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~-----~~~~~~ 85 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDE-----PPERHV 85 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCC-----CHHHHH
Confidence 578899999999999999999999999755321111222221 111 11 11111 1222222221 111111
Q ss_pred HHHHhccCCCCccHHHHHHHHHHHHH-----------HcCCCccccccccCccCCcCCHHH--------HHHHHHHHHHh
Q 006571 251 TYAALLRLPNTLTKQQKEKRAIDVIN-----------ELGLERCQDTMIGGSFVRGVSGGE--------RKRVCIGNEII 311 (640)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~v~~~l~-----------~lgL~~~~~t~vg~~~~~~LSGGq--------rqRv~IA~aL~ 311 (640)
..... ..+.++...+ ...+....++..+ .....+|||+ +||+++||++.
T Consensus 86 ~~~~~-----------~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~-~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~ 153 (249)
T cd01128 86 QVAEM-----------VLEKAKRLVEHGKDVVILLDSITRLARAYNTVVP-PSGKILSGGVDANALHKPKRFFGAARNIE 153 (249)
T ss_pred HHHHH-----------HHHHHHHHHHCCCCEEEEEECHHHhhhhhhhccc-cCCCCCCCCcChhhhhhhHHHHHHhcCCC
Confidence 11000 0000111100 0012223344333 2335689999 99999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHH-HHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeE
Q 006571 312 INPSLLFLDEPTSGLDSTTALR-IVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (640)
Q Consensus 312 ~~P~iLlLDEPTsgLD~~s~~~-i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~i 374 (640)
.+++|.+| ||+.+|+.+... ++ +.++...+.|.|+.+|++.. ...+|.|.+|+.|++
T Consensus 154 ~~gsIt~l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la~--~~~~paI~vl~s~sr 211 (249)
T cd01128 154 EGGSLTII--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLAE--RRIFPAIDILKSGTR 211 (249)
T ss_pred CCCceEEe--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHhh--CCCCCeEEEcCCCCc
Confidence 99999999 999999765554 54 55555457899999999875 578999999999987
No 425
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.36 E-value=1e-12 Score=131.61 Aligned_cols=44 Identities=20% Similarity=0.381 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHHHH
Q 006571 300 ERKRVCIGNEIIINPSLLFLDEPT-----SGLDSTTALRIVQMLQDIAE 343 (640)
Q Consensus 300 qrqRv~IA~aL~~~P~iLlLDEPT-----sgLD~~s~~~i~~~L~~l~~ 343 (640)
|++++.||++++.+|+++++|||| +|||+.++..+.+.++++++
T Consensus 157 ~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 157 EKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred HHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999 99999999999999999875
No 426
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.31 E-value=1.7e-11 Score=135.03 Aligned_cols=174 Identities=20% Similarity=0.263 Sum_probs=113.8
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeC---Ch---------hccCcEEEEcc
Q 006571 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY---SK---------SLKSKIGFVTQ 236 (640)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~---~~---------~~~~~i~yV~Q 236 (640)
+..+++++ +.+.+|++++|+|+||+|||||+++|+|.. . +..|.|.+.|+.- .+ .+++.|.+|.+
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~-~-~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~ 221 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNT-S-ADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVAT 221 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhccc-C-CCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEEC
Confidence 35689999 999999999999999999999999999854 3 4579999965433 21 24567889986
Q ss_pred CCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHH-HHHhhCCC
Q 006571 237 DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG-NEIIINPS 315 (640)
Q Consensus 237 ~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA-~aL~~~P~ 315 (640)
.+.-. -.+....+.+ -.+.|.+..-| .|..+- ..+++ |.+-| |++.
T Consensus 222 ~~~~~---~~r~~~~~~a--------------~~iAEyfr~~g----~~Vll~---~Dslt-----r~A~A~rEis---- 268 (438)
T PRK07721 222 SDQPA---LMRIKGAYTA--------------TAIAEYFRDQG----LNVMLM---MDSVT-----RVAMAQREIG---- 268 (438)
T ss_pred CCCCH---HHHHHHHHHH--------------HHHHHHHHHCC----CcEEEE---EeChH-----HHHHHHHHHH----
Confidence 54211 0111111111 01122222222 122211 01111 11111 1111
Q ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHHHHH--CCC-----EEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHH
Q 006571 316 LLFLDEP--TSGLDSTTALRIVQMLQDIAE--AGK-----TVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (640)
Q Consensus 316 iLlLDEP--TsgLD~~s~~~i~~~L~~l~~--~g~-----TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (640)
+.+.|| |+|+|+.....+.+.++++.. .|. ||++.+||.+. ..||++..+.+|+|+..++..+
T Consensus 269 -l~~ge~P~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e---~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 269 -LAVGEPPTTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE---PIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred -HhcCCCCccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc---hhhhhEEEecCEEEEEeccHHH
Confidence 123454 679999999999999999873 575 99999999874 6799999999999999998766
No 427
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.31 E-value=1.7e-11 Score=123.94 Aligned_cols=135 Identities=19% Similarity=0.210 Sum_probs=87.7
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHH
Q 006571 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248 (640)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~E 248 (640)
++.+.+|+++.+++|++++|.||||+||||++++|++.... ...|...... .-.++|..|= |..+...|
T Consensus 17 ~~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~l-a~~G~~v~a~-------~~~~~~~~~i---~~~~~~~d 85 (222)
T cd03287 17 KSFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIM-AQIGSFVPAS-------SATLSIFDSV---LTRMGASD 85 (222)
T ss_pred CCEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHH-HhCCCEEEcC-------ceEEeccceE---EEEecCcc
Confidence 35689999999999999999999999999999999983222 3356543221 1123333331 11111111
Q ss_pred HHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCC--HHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 006571 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS--GGERKRVCIGNEIIINPSLLFLDEPTSGL 326 (640)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LS--GGqrqRv~IA~aL~~~P~iLlLDEPTsgL 326 (640)
++. .++| ..|-+|++-...-+.+|+++|||||.+|.
T Consensus 86 ~~~------------------------------------------~~~StF~~e~~~~~~il~~~~~~sLvllDE~~~gT 123 (222)
T cd03287 86 SIQ------------------------------------------HGMSTFMVELSETSHILSNCTSRSLVILDELGRGT 123 (222)
T ss_pred ccc------------------------------------------cccchHHHHHHHHHHHHHhCCCCeEEEEccCCCCC
Confidence 110 0111 12444444444456789999999999888
Q ss_pred CHHHHHHH-HHHHHHHHHC-CCEEEEEeCCCC
Q 006571 327 DSTTALRI-VQMLQDIAEA-GKTVVTTIHQPS 356 (640)
Q Consensus 327 D~~s~~~i-~~~L~~l~~~-g~TvI~~tH~~~ 356 (640)
|+.....+ ...++.+.+. +.++|++||++.
T Consensus 124 ~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~ 155 (222)
T cd03287 124 STHDGIAIAYATLHYLLEEKKCLVLFVTHYPS 155 (222)
T ss_pred ChhhHHHHHHHHHHHHHhccCCeEEEEcccHH
Confidence 87766664 5667777765 889999999964
No 428
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.29 E-value=6.3e-12 Score=133.48 Aligned_cols=185 Identities=26% Similarity=0.371 Sum_probs=125.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--------h------------ccC--cEEEEccCC
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--------S------------LKS--KIGFVTQDD 238 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--------~------------~~~--~i~yV~Q~~ 238 (640)
+||++.+++|-||-||||-+++|+|++.+ +. |.- .++-+..+ + ++. +.-||.|-+
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kp-nl-g~~-~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ip 174 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKP-NL-GRY-DNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIP 174 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCC-CC-CCC-CCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHH
Confidence 58999999999999999999999998753 22 210 01111100 0 000 001222211
Q ss_pred CCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEE
Q 006571 239 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 318 (640)
Q Consensus 239 ~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLl 318 (640)
... ..+|.++|. ....++...++++.+.|.+..+..+ ..|||||-||.+||.+-+.+.++.+
T Consensus 175 r~~-k~~v~~~l~------------~~~~r~~~~~~~~~~~L~~~~~re~-----~~lsggelqrfaia~~~vq~advyM 236 (592)
T KOG0063|consen 175 RAV-KGTVGSLLD------------RKDERDNKEEVCDQLDLNNLLDREV-----EQLSGGELQRFAIAMVCVQKADVYM 236 (592)
T ss_pred HHH-HHHHHHHHH------------HHhhcccHHHHHHHHHHhhHHHhhh-----hhcccchhhhhhhhhhhhhhcceeE
Confidence 111 113333332 1222334667778888877666543 5899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcC-----CeEEEecChHHHHHHH
Q 006571 319 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK-----GSLLYFGKASEAMAYF 387 (640)
Q Consensus 319 LDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~-----G~iv~~G~~~~~~~~f 387 (640)
+|||.+-||...+.+--..++.+....+=||++-||++- +.-+.|-|.+|.. |-+..--+..+...-|
T Consensus 237 FDEpSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLsV-LDylSDFiCcLYGvp~aYGVVT~Pfsvr~giniF 309 (592)
T KOG0063|consen 237 FDEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSV-LDYLSDFICCLYGVPSAYGVVTMPFSVREGINIF 309 (592)
T ss_pred ecCCcccchHHHhhhHHHHHHHhhCCCCeEEEEEeechH-HHhhhcceeEEecCCccceEEEeccchhhhhhhh
Confidence 999999999999999999999998888999999999874 4445788888864 3444333445544444
No 429
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.29 E-value=5.2e-12 Score=144.37 Aligned_cols=77 Identities=26% Similarity=0.400 Sum_probs=70.1
Q ss_pred CcCCHHHHHHHHHHHHHhhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEE
Q 006571 294 RGVSGGERKRVCIGNEIIIN----PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 369 (640)
Q Consensus 294 ~~LSGGqrqRv~IA~aL~~~----P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL 369 (640)
+.+||||+||++||++++.. |++|||||||+|||+.++..+.+.|+++++ ++|||++||++. +...||++++|
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~-~~~vi~iTH~~~--~~~~ad~~~~l 515 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE-RHQVLCVTHLPQ--VAAHADAHFKV 515 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEEChHH--HHHhcCeEEEE
Confidence 46899999999999999985 699999999999999999999999999975 899999999975 34689999999
Q ss_pred cCCe
Q 006571 370 GKGS 373 (640)
Q Consensus 370 ~~G~ 373 (640)
++|.
T Consensus 516 ~k~~ 519 (563)
T TIGR00634 516 EKEG 519 (563)
T ss_pred EEcc
Confidence 9874
No 430
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.26 E-value=8.6e-12 Score=142.47 Aligned_cols=79 Identities=24% Similarity=0.381 Sum_probs=69.7
Q ss_pred cCCcCCHHHHHHHHHHHHHh----------hCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHH
Q 006571 292 FVRGVSGGERKRVCIGNEII----------INPSLLFLDEPT-SGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLF 360 (640)
Q Consensus 292 ~~~~LSGGqrqRv~IA~aL~----------~~P~iLlLDEPT-sgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~ 360 (640)
.+..||||||||++||++|+ .+|+++|||||| ++||+.+...+.+.|+++ .|.|||++||++. ..
T Consensus 465 ~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~~~--~~ 540 (562)
T PHA02562 465 SYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KDTNVFVISHKDH--DP 540 (562)
T ss_pred ChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CCCeEEEEECchh--ch
Confidence 34689999999999999987 599999999998 789999999999999998 5889999999964 45
Q ss_pred hccCEEEEEcC-CeE
Q 006571 361 HKFDKLILLGK-GSL 374 (640)
Q Consensus 361 ~~~D~i~vL~~-G~i 374 (640)
..||++++|.+ |+.
T Consensus 541 ~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 541 QKFDRHLKMEKVGRF 555 (562)
T ss_pred hhhhcEEEEEEECCe
Confidence 77999999986 554
No 431
>PRK10869 recombination and repair protein; Provisional
Probab=99.25 E-value=1.5e-11 Score=139.92 Aligned_cols=77 Identities=23% Similarity=0.397 Sum_probs=69.6
Q ss_pred CcCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEE
Q 006571 294 RGVSGGERKRVCIGNEIII----NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 369 (640)
Q Consensus 294 ~~LSGGqrqRv~IA~aL~~----~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL 369 (640)
+.+||||+||++||++++. +|+++|+|||++|||..++..+.+.|+++++ +.+||++||+|. +...||+.+++
T Consensus 429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~-~~qvi~iTH~~~--~~~~ad~~~~v 505 (553)
T PRK10869 429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE-STQVMCVTHLPQ--VAGCGHQHFFV 505 (553)
T ss_pred hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH--HHHhCCEEEEE
Confidence 3589999999999999997 5899999999999999999999999999975 789999999975 45899999999
Q ss_pred cCCe
Q 006571 370 GKGS 373 (640)
Q Consensus 370 ~~G~ 373 (640)
.++.
T Consensus 506 ~k~~ 509 (553)
T PRK10869 506 SKET 509 (553)
T ss_pred eccc
Confidence 8753
No 432
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.25 E-value=6.5e-12 Score=147.71 Aligned_cols=81 Identities=19% Similarity=0.210 Sum_probs=63.7
Q ss_pred CcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCC
Q 006571 294 RGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ-MLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKG 372 (640)
Q Consensus 294 ~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~-~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G 372 (640)
..+|+|++|++.|++++ .+|+++|||||++|+|+.....+.. ++..+.+.|.++|++||++.. ....+|+..++ ++
T Consensus 389 StfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el-~~~~~~~~~v~-~~ 465 (782)
T PRK00409 389 STFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKEL-KALMYNREGVE-NA 465 (782)
T ss_pred hHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHH-HHHHhcCCCeE-EE
Confidence 57999999999999998 8999999999999999999888854 677777778999999999542 22334544443 45
Q ss_pred eEEEe
Q 006571 373 SLLYF 377 (640)
Q Consensus 373 ~iv~~ 377 (640)
.+.+.
T Consensus 466 ~~~~d 470 (782)
T PRK00409 466 SVEFD 470 (782)
T ss_pred EEEEe
Confidence 55553
No 433
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.24 E-value=2.3e-11 Score=148.47 Aligned_cols=81 Identities=21% Similarity=0.239 Sum_probs=73.8
Q ss_pred ccCCcCCHHHHHHHHHHHHHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHH
Q 006571 291 SFVRGVSGGERKRVCIGNEIII----------NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLF 360 (640)
Q Consensus 291 ~~~~~LSGGqrqRv~IA~aL~~----------~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~ 360 (640)
..++.|||||++||+||++|+. +|++|||||||+|||+.+...+++.|+++...|++|++|||++. ...
T Consensus 946 r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~-~~~ 1024 (1042)
T TIGR00618 946 RPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPE-FRE 1024 (1042)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHH
Confidence 4568899999999999999986 79999999999999999999999999999888999999999965 467
Q ss_pred hccCEEEEEcCC
Q 006571 361 HKFDKLILLGKG 372 (640)
Q Consensus 361 ~~~D~i~vL~~G 372 (640)
.++|+|.|++.|
T Consensus 1025 ~~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1025 RIPHRILVKKTN 1036 (1042)
T ss_pred hhCCEEEEEECC
Confidence 889999999754
No 434
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.20 E-value=1.6e-10 Score=131.31 Aligned_cols=138 Identities=23% Similarity=0.386 Sum_probs=103.1
Q ss_pred CCCCCHHHHHHHHHhccCCCCccHHHHHHHHHH------HHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCC
Q 006571 241 FPHLTVKETLTYAALLRLPNTLTKQQKEKRAID------VINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINP 314 (640)
Q Consensus 241 ~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~------~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P 314 (640)
+..|++.|.+.|...+.+.+. .....+..+.+ +|-.+||.-.. -++....|||||.||+-||..|=.+=
T Consensus 426 ~~~msi~~~~~f~~~l~l~~~-~~~ia~~ilkei~~RL~fL~~VGL~YLt----L~R~a~TLSGGEaQRIRLAtqiGS~L 500 (935)
T COG0178 426 ISEMSIADALEFFENLKLSEK-EKKIAEPILKEIKERLGFLVDVGLGYLT----LSRSAGTLSGGEAQRIRLATQIGSGL 500 (935)
T ss_pred HhhccHHHHHHHHHhCCCchh-hHHHHHHHHHHHHHHHHHHHHcCcCccc----ccccCCCcChhHHHHHHHHHHhcccc
Confidence 346788888888766543211 11111122222 23345664321 13345689999999999999997653
Q ss_pred --CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEE------cCCeEEEecChHHHHH
Q 006571 315 --SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEAMA 385 (640)
Q Consensus 315 --~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL------~~G~iv~~G~~~~~~~ 385 (640)
=+++||||+-||-+..-.++++.|++|.+.|-|+|++-||.. ....||+|+=| +.|+|++.|+++++++
T Consensus 501 tGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDed--ti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~ 577 (935)
T COG0178 501 TGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDED--TIRAADHIIDIGPGAGEHGGEIVAEGTPEELLA 577 (935)
T ss_pred eeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHH--HHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHh
Confidence 478999999999999999999999999999999999999954 56889999998 5689999999999985
No 435
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.16 E-value=2.8e-10 Score=115.81 Aligned_cols=150 Identities=19% Similarity=0.265 Sum_probs=92.2
Q ss_pred EEeCCeEEEEECCCCCcHHHH-HHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHhcc
Q 006571 179 SVNPGEVLALMGPSGSGKTTL-LNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLR 257 (640)
Q Consensus 179 ~i~~Ge~~aIvGpsGsGKSTL-l~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~ 257 (640)
-+++|+++.|.|+|||||||| ++++.+... .| ..+.|+..+ .|..+.+.....+.
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~----~g--------------~~~~yi~~e------~~~~~~~~~~~~~g 75 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQ----NG--------------YSVSYVSTQ------LTTTEFIKQMMSLG 75 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHh----CC--------------CcEEEEeCC------CCHHHHHHHHHHhC
Confidence 489999999999999999999 688886332 12 124555532 35555555443221
Q ss_pred CCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCC----CHH
Q 006571 258 LPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIII----NPSLLFLDEPTSGL----DST 329 (640)
Q Consensus 258 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~----~P~iLlLDEPTsgL----D~~ 329 (640)
. .. ++.... +.-...+. . ..+|+++.++-.+.+.+-. +|+++++||||+++ |+.
T Consensus 76 ~--~~---------~~~~~~-~~l~~~~~-----~-~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~ 137 (230)
T PRK08533 76 Y--DI---------NKKLIS-GKLLYIPV-----Y-PLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEV 137 (230)
T ss_pred C--ch---------HHHhhc-CcEEEEEe-----c-ccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchH
Confidence 1 11 111110 10000010 1 2367776665555444333 69999999999999 888
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCCCc------HHHhccCEEEEEc
Q 006571 330 TALRIVQMLQDIAEAGKTVVTTIHQPSS------RLFHKFDKLILLG 370 (640)
Q Consensus 330 s~~~i~~~L~~l~~~g~TvI~~tH~~~~------~i~~~~D~i~vL~ 370 (640)
....+.+.++.+++.|.|+++++|.... .+..++|-|+.|+
T Consensus 138 ~~~~l~~~l~~l~~~g~tvi~t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 138 AVNDLMAFFKRISSLNKVIILTANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEecccccccccceeEEEeeeEEEEEE
Confidence 8889999999998878887776664321 1233467777776
No 436
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.15 E-value=3.9e-10 Score=109.89 Aligned_cols=78 Identities=19% Similarity=0.117 Sum_probs=64.6
Q ss_pred CCcCCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHHCCCEEEEEeCCCCc------
Q 006571 293 VRGVSGGERK------RVCIGNEIIINPSLLFLDEPTSGLD---STTALRIVQMLQDIAEAGKTVVTTIHQPSS------ 357 (640)
Q Consensus 293 ~~~LSGGqrq------Rv~IA~aL~~~P~iLlLDEPTsgLD---~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~------ 357 (640)
+..+|+|++| +.........+|+++++|||++.+| ......+.+.++.+++.|.|+|+++|....
T Consensus 69 ~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~~~~~ 148 (187)
T cd01124 69 PDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEGTGFG 148 (187)
T ss_pred ccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCCcccC
Confidence 4578999998 4555555667999999999999999 888888889999988889999999998653
Q ss_pred --HHHhccCEEEEEc
Q 006571 358 --RLFHKFDKLILLG 370 (640)
Q Consensus 358 --~i~~~~D~i~vL~ 370 (640)
.+..+||.|+.|+
T Consensus 149 ~~~~~~~aD~ii~l~ 163 (187)
T cd01124 149 GGDVEYLVDGVIRLR 163 (187)
T ss_pred cCceeEeeeEEEEEE
Confidence 2567789999887
No 437
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.15 E-value=9.1e-11 Score=118.28 Aligned_cols=137 Identities=18% Similarity=0.214 Sum_probs=89.3
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHH
Q 006571 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248 (640)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~E 248 (640)
++.+-+|+++.+++|++++|.||||+||||+++.+++...- ...| ..+... ...++++ +.+|..+...|
T Consensus 16 ~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~l-a~~G------~~vpa~-~~~i~~~---~~i~~~~~~~d 84 (218)
T cd03286 16 SSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIM-AQMG------MDVPAK-SMRLSLV---DRIFTRIGARD 84 (218)
T ss_pred CCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHH-HHcC------CccCcc-ccEeccc---cEEEEecCccc
Confidence 45789999999999999999999999999999999974221 0112 111111 1112222 22232322233
Q ss_pred HHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 006571 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 328 (640)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~ 328 (640)
++..+ + ..+. -|-+|++-....+.+|+++|||||.+|+|+
T Consensus 85 ~~~~~--------------------------~-------------StF~-~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~ 124 (218)
T cd03286 85 DIMKG--------------------------E-------------STFM-VELSETANILRHATPDSLVILDELGRGTST 124 (218)
T ss_pred ccccC--------------------------c-------------chHH-HHHHHHHHHHHhCCCCeEEEEecccCCCCc
Confidence 32211 0 0011 244444444444578999999999999999
Q ss_pred HHHHHHHHH-HHHHHHC-CCEEEEEeCCCC
Q 006571 329 TTALRIVQM-LQDIAEA-GKTVVTTIHQPS 356 (640)
Q Consensus 329 ~s~~~i~~~-L~~l~~~-g~TvI~~tH~~~ 356 (640)
.....+... ++.+.+. +.++|++||++.
T Consensus 125 ~dg~~la~ail~~L~~~~~~~~i~~TH~~e 154 (218)
T cd03286 125 HDGYAIAHAVLEYLVKKVKCLTLFSTHYHS 154 (218)
T ss_pred hHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 998888887 7777765 899999999954
No 438
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=99.14 E-value=5.4e-11 Score=118.45 Aligned_cols=63 Identities=22% Similarity=0.487 Sum_probs=53.6
Q ss_pred CcCCHHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCC
Q 006571 294 RGVSGGERKRVCIGNEIIINP---SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 356 (640)
Q Consensus 294 ~~LSGGqrqRv~IA~aL~~~P---~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~ 356 (640)
..+|.|+||.+.|+..|...+ .++++|||-++|+|..+..+++.|+++.+.+.-||++||.|.
T Consensus 235 ~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~ 300 (303)
T PF13304_consen 235 SSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPF 300 (303)
T ss_dssp S---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GG
T ss_pred ccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccch
Confidence 457999999999999988877 899999999999999999999999887765789999999863
No 439
>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane
Probab=99.13 E-value=9.9e-12 Score=122.10 Aligned_cols=144 Identities=30% Similarity=0.545 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHHH-hhcchhH-HHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006571 491 QQYTILFRRGIKE-HRHDYFS-WLRITQVLATAVILGLLWWQSDSKSPKGLEDQAGLLFFIAVFWSFFPIFTAIFTFPQE 568 (640)
Q Consensus 491 ~Q~~~L~~R~~~~-~r~~~~~-~~r~~~~i~~aliiG~lf~~~~~~~~~~~~~~~g~lff~~~~~~~~~~~~~i~~~~~e 568 (640)
+|++.|++|+++. +|++... +..++..++.++++|.+|.+.+ ++.+++ ++.|++++.+.+..+.........+..|
T Consensus 1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (210)
T PF01061_consen 1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLG-NSQDGF-NRPGLIFGSIIFSFFSSISGSSISFERE 78 (210)
T ss_pred CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhccc-cccccc-ccceeeehhhHHhhhhhcccchhhhhhh
Confidence 5999999999986 6887666 7788999999999999999886 334444 7788888877766655555555778899
Q ss_pred hHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHh
Q 006571 569 RAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQA 638 (640)
Q Consensus 569 r~v~~rE~~~g~Y~~~ay~lA~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~F~~f~l~~~l~~~~~~~ 638 (640)
+..+.||+.++.|++.+|++|+.+.+++..++.++++.++.|++.|++.+ +|+.++++++++.++..+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~ 146 (210)
T PF01061_consen 79 RGTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFFLFLLILLLSILCSSG 146 (210)
T ss_pred ccccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc--cchheecccccccccccc
Confidence 99999999999999999999999999999999999999999999999987 566666666655555443
No 440
>PRK13695 putative NTPase; Provisional
Probab=99.12 E-value=3.7e-11 Score=116.67 Aligned_cols=79 Identities=13% Similarity=0.190 Sum_probs=64.2
Q ss_pred CcCCHHHHHHHHHHHHHhhCCCEEEEeCC--CCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcC
Q 006571 294 RGVSGGERKRVCIGNEIIINPSLLFLDEP--TSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (640)
Q Consensus 294 ~~LSGGqrqRv~IA~aL~~~P~iLlLDEP--TsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~ 371 (640)
..+||+++-+..+++..+.+|+++++||| +.++| ..+.+.+.++.+.|+++|+++|+. .+...+|+|..+.+
T Consensus 77 ~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~----~~~~~~l~~~~~~~~~~i~v~h~~--~~~~~~~~i~~~~~ 150 (174)
T PRK13695 77 VNLEDLERIGIPALERALEEADVIIIDEIGKMELKS----PKFVKAVEEVLDSEKPVIATLHRR--SVHPFVQEIKSRPG 150 (174)
T ss_pred EehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhh----HHHHHHHHHHHhCCCeEEEEECch--hhHHHHHHHhccCC
Confidence 46999999999999999999999999995 44444 345666666666799999999983 34567899999999
Q ss_pred CeEEEec
Q 006571 372 GSLLYFG 378 (640)
Q Consensus 372 G~iv~~G 378 (640)
|++.+.-
T Consensus 151 ~~i~~~~ 157 (174)
T PRK13695 151 GRVYELT 157 (174)
T ss_pred cEEEEEc
Confidence 9997763
No 441
>PRK03918 chromosome segregation protein; Provisional
Probab=99.09 E-value=1.7e-10 Score=138.67 Aligned_cols=78 Identities=28% Similarity=0.330 Sum_probs=68.8
Q ss_pred cCCcCCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCE
Q 006571 292 FVRGVSGGERK------RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDK 365 (640)
Q Consensus 292 ~~~~LSGGqrq------Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~ 365 (640)
.+..|||||++ |++||++++.+|+++||||||++||+..+..+.+.|..++..+.+||++||++. +...||+
T Consensus 785 ~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~--~~~~~d~ 862 (880)
T PRK03918 785 PLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEE--LKDAADY 862 (880)
T ss_pred ChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHH--HHHhCCe
Confidence 45679999999 555666788999999999999999999999999999998776789999999963 5688999
Q ss_pred EEEEcC
Q 006571 366 LILLGK 371 (640)
Q Consensus 366 i~vL~~ 371 (640)
+++|+.
T Consensus 863 ~~~l~~ 868 (880)
T PRK03918 863 VIRVSL 868 (880)
T ss_pred EEEEEe
Confidence 999984
No 442
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=99.05 E-value=3e-09 Score=126.47 Aligned_cols=78 Identities=26% Similarity=0.256 Sum_probs=64.7
Q ss_pred hhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcH--------HHhccCEEEEEcCCeEEEecChH
Q 006571 311 IINPSLLFLDEPTSGL-DSTTALRIVQMLQDIAEAGKTVVTTIHQPSSR--------LFHKFDKLILLGKGSLLYFGKAS 381 (640)
Q Consensus 311 ~~~P~iLlLDEPTsgL-D~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~--------i~~~~D~i~vL~~G~iv~~G~~~ 381 (640)
..+|.++++|||+.+| |+..+..+.+.++.+.+.|.++|++||++... +.+.||.+++|.+|++...|..
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~~- 728 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGTR- 728 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccchH-
Confidence 5799999999999999 79999999999999988899999999998652 1367999999999998776643
Q ss_pred HHHHHHHhcCC
Q 006571 382 EAMAYFSSIGC 392 (640)
Q Consensus 382 ~~~~~f~~~g~ 392 (640)
++++.+|+
T Consensus 729 ---~~~~~~gl 736 (818)
T PRK13830 729 ---EFYERIGF 736 (818)
T ss_pred ---HHHHHcCC
Confidence 34455554
No 443
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=99.05 E-value=5.1e-10 Score=136.34 Aligned_cols=80 Identities=25% Similarity=0.220 Sum_probs=69.0
Q ss_pred ccCCcCCHHHHHHHHHHHHHhh--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhc
Q 006571 291 SFVRGVSGGERKRVCIGNEIII--------NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHK 362 (640)
Q Consensus 291 ~~~~~LSGGqrqRv~IA~aL~~--------~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~ 362 (640)
..+..|||||+++++||++|+. +|++||+||||++||+.+...+++.|..+.+.|+||++|||... ...++
T Consensus 945 r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~-l~~~i 1023 (1047)
T PRK10246 945 RDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEA-MKERI 1023 (1047)
T ss_pred CCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHH-HHHhc
Confidence 4568899999999999999996 89999999999999999999999999999888999999999743 23445
Q ss_pred cCEEEEEcC
Q 006571 363 FDKLILLGK 371 (640)
Q Consensus 363 ~D~i~vL~~ 371 (640)
-.+|.|-..
T Consensus 1024 ~~qi~V~k~ 1032 (1047)
T PRK10246 1024 PVQIKVKKI 1032 (1047)
T ss_pred cceEEEEEC
Confidence 566666654
No 444
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.04 E-value=4.5e-10 Score=139.91 Aligned_cols=110 Identities=16% Similarity=0.216 Sum_probs=78.5
Q ss_pred CCCCCHHHHHHHHHhccCCCCccHH---HHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHH------HHHHHHHHh
Q 006571 241 FPHLTVKETLTYAALLRLPNTLTKQ---QKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK------RVCIGNEII 311 (640)
Q Consensus 241 ~~~lTV~Enl~~~~~~~~~~~~~~~---~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq------Rv~IA~aL~ 311 (640)
|. .|+.|||.+ . +. .+.+ .......+++.. +... |+.++. ...||||||| |++||++++
T Consensus 1154 ~~-~~~~~~i~~-~----~~-~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~--~~~lS~Gq~~~~~~~~rlala~~~~ 1221 (1311)
T TIGR00606 1154 YR-GQDIEYIEI-R----SD-ADENVSASDKRRNYNYRVV--MLKG-DTALDM--RGRCSAGQKVLASLIIRLALAETFC 1221 (1311)
T ss_pred cC-ccHHHHhhc-C----CC-CChHHHHHHHcCchHHHhc--cCCC-CeecCC--CCCCchhhhhHhhHhHHHHHHHHHh
Confidence 44 499999987 2 11 1211 111223333322 3333 565542 2479999999 999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-----CCCEEEEEeCCCCcHHHhcc
Q 006571 312 INPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-----AGKTVVTTIHQPSSRLFHKF 363 (640)
Q Consensus 312 ~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-----~g~TvI~~tH~~~~~i~~~~ 363 (640)
.+|++|+|||||+|||+.+...+.+.|..+.. .|.|||++||++. .+..+|
T Consensus 1222 ~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~-~~~~~~ 1277 (1311)
T TIGR00606 1222 LNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDED-FVELLG 1277 (1311)
T ss_pred cCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHH-HHHHHh
Confidence 99999999999999999999999999988742 3789999999965 354443
No 445
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.02 E-value=6.3e-10 Score=118.05 Aligned_cols=144 Identities=19% Similarity=0.216 Sum_probs=94.9
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEe-CChhccCcEEEEccCCCCCCCCCHHHHHHHH
Q 006571 175 GITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP-YSKSLKSKIGFVTQDDVLFPHLTVKETLTYA 253 (640)
Q Consensus 175 ~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~-~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~ 253 (640)
=+++.+++|+.++|+||+|||||||+++|++.+. +..|.+.+.+.. +....+..+.++.+...
T Consensus 136 ~l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~--~~~~iv~ied~~El~~~~~~~~~l~~~~~~-------------- 199 (308)
T TIGR02788 136 FLRLAIASRKNIIISGGTGSGKTTFLKSLVDEIP--KDERIITIEDTREIFLPHPNYVHLFYSKGG-------------- 199 (308)
T ss_pred HHHHHhhCCCEEEEECCCCCCHHHHHHHHHccCC--ccccEEEEcCccccCCCCCCEEEEEecCCC--------------
Confidence 3668899999999999999999999999998653 445666664321 00000111222211100
Q ss_pred HhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 006571 254 ALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR 333 (640)
Q Consensus 254 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~ 333 (640)
+ + ...++- .-.+..+|-.+|+++++|||.+ .+
T Consensus 200 ----------------------------~------~---~~~~~~----~~~l~~~Lr~~pd~ii~gE~r~-------~e 231 (308)
T TIGR02788 200 ----------------------------Q------G---LAKVTP----KDLLQSCLRMRPDRIILGELRG-------DE 231 (308)
T ss_pred ----------------------------C------C---cCccCH----HHHHHHHhcCCCCeEEEeccCC-------HH
Confidence 0 0 001111 1235556778999999999996 34
Q ss_pred HHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHH
Q 006571 334 IVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (640)
Q Consensus 334 i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (640)
+.+.++.+...+.+++.++|..+ .....||+..|..|++...|.+.+.+
T Consensus 232 ~~~~l~a~~~g~~~~i~T~Ha~~--~~~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 232 AFDFIRAVNTGHPGSITTLHAGS--PEEAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred HHHHHHHHhcCCCeEEEEEeCCC--HHHHHHHHHHHhhccccccCCCHHHH
Confidence 56667766543346799999976 45668999999999998888887765
No 446
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=99.02 E-value=1.3e-09 Score=119.47 Aligned_cols=169 Identities=17% Similarity=0.166 Sum_probs=115.7
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccC
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~ 229 (640)
++-++++..+. ....+++++ +.+.+|+.++|+|+||+|||||+++|+|... +..|.|.+.|+.
T Consensus 131 ~~r~~i~~~l~-------TGiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~--~~~gvI~~iGer------- 193 (432)
T PRK06793 131 FEREEITDVFE-------TGIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAK--ADINVISLVGER------- 193 (432)
T ss_pred hheechhhccC-------CCCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCC--CCeEEEEeCCCC-------
Confidence 55566665441 234688885 9999999999999999999999999998542 345655554432
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHH
Q 006571 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (640)
Q Consensus 230 ~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~a 309 (640)
..+|.|.+..-. ..-++.+. ..+ ....+-|.|+|+|++.+.+
T Consensus 194 -------------g~ev~e~~~~~l---------------------~~~gl~~t--vvv--~~tsd~s~~~r~ra~~~a~ 235 (432)
T PRK06793 194 -------------GREVKDFIRKEL---------------------GEEGMRKS--VVV--VATSDESHLMQLRAAKLAT 235 (432)
T ss_pred -------------cccHHHHHHHHh---------------------hhccccee--EEE--EECCCCCHHHHHHHHHHHH
Confidence 246776654321 11122110 111 1235789999999999988
Q ss_pred Hh-------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecCh
Q 006571 310 II-------INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (640)
Q Consensus 310 L~-------~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (640)
.+ .++-++++|+||+..|+. .+|-..+.+.-..|.+..+.+|- + ++++|.-...+|.|...++.
T Consensus 236 ~iAEyfr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l-~----~L~ERag~~~~GSiT~~~tv 306 (432)
T PRK06793 236 SIAEYFRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYM-K----KLLERSGKTQKGSITGIYTV 306 (432)
T ss_pred HHHHHHHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccc-h----hHHHHhccCCCcceEEEEEE
Confidence 88 789999999999999997 45555555554458888888883 3 34455555678988777654
No 447
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.01 E-value=1.3e-09 Score=102.55 Aligned_cols=63 Identities=21% Similarity=0.209 Sum_probs=48.0
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcH
Q 006571 296 VSGGERKRVCIGNEIIINPSLLFLDEPTS----------GLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSR 358 (640)
Q Consensus 296 LSGGqrqRv~IA~aL~~~P~iLlLDEPTs----------gLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~ 358 (640)
.+.++.+++..+++...+|+++++|||++ +.|......+.+++....+.+.|+|+++|.....
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 68 PAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred CcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCcc
Confidence 45566678888999999999999999994 4555555666666555555689999999987653
No 448
>PRK01156 chromosome segregation protein; Provisional
Probab=98.98 E-value=1.3e-09 Score=131.34 Aligned_cols=77 Identities=23% Similarity=0.325 Sum_probs=66.6
Q ss_pred cCCcCCHHHHHHHHH------HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HC-C-CEEEEEeCCCCcHHHhc
Q 006571 292 FVRGVSGGERKRVCI------GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA-EA-G-KTVVTTIHQPSSRLFHK 362 (640)
Q Consensus 292 ~~~~LSGGqrqRv~I------A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~-~~-g-~TvI~~tH~~~~~i~~~ 362 (640)
.+..||||||+|++| |++++.+|++++|||||++||+.....+.+.|+... .. | .|||++||++. ....
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~--~~~~ 875 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRE--LLSV 875 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchH--HHHh
Confidence 467899999999975 589999999999999999999999999999998654 33 3 48999999964 4578
Q ss_pred cCEEEEEc
Q 006571 363 FDKLILLG 370 (640)
Q Consensus 363 ~D~i~vL~ 370 (640)
||+++.+.
T Consensus 876 ~d~ii~~~ 883 (895)
T PRK01156 876 ADVAYEVK 883 (895)
T ss_pred cCeEEEEE
Confidence 99999998
No 449
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.95 E-value=1.1e-08 Score=98.90 Aligned_cols=82 Identities=22% Similarity=0.417 Sum_probs=61.7
Q ss_pred cCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhc-cCEEE
Q 006571 289 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHK-FDKLI 367 (640)
Q Consensus 289 g~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~-~D~i~ 367 (640)
|+......|-||-=---+.+. .++.-|.|||||-++|.|.-+..++..|+++++.|.-+||.||.|-- ..+ --.|+
T Consensus 123 ~~~sLh~~SHGEsf~~i~~~r-f~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiL--lAiP~A~I~ 199 (233)
T COG3910 123 GGRSLHHMSHGESFLAIFHNR-FNGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPIL--LAIPGAEIY 199 (233)
T ss_pred CCcchhhhccchHHHHHHHHH-hccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhh--eeCCCcEEE
Confidence 334445688898654444444 45678999999999999999999999999999999999999998742 222 14566
Q ss_pred EEcCCe
Q 006571 368 LLGKGS 373 (640)
Q Consensus 368 vL~~G~ 373 (640)
-++.+.
T Consensus 200 ~~~~~g 205 (233)
T COG3910 200 EISESG 205 (233)
T ss_pred EEecCC
Confidence 666554
No 450
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.94 E-value=4.1e-09 Score=104.75 Aligned_cols=57 Identities=23% Similarity=0.347 Sum_probs=43.0
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEc
Q 006571 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (640)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~ 370 (640)
+|+++|..+|+++++|||. |.++...++ +.+..|..++.++|..+. ...+||++.|.
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~l----~~a~~G~~v~~t~Ha~~~--~~~~~Rl~~l~ 122 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIRLAL----TAAETGHLVMSTLHTNSA--AKTIDRIIDVF 122 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHHHHH----HHHHcCCEEEEEecCCcH--HHHHhHHHhhc
Confidence 4788999999999999996 665533333 345579999999999763 46789987764
No 451
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.91 E-value=1.4e-09 Score=133.81 Aligned_cols=76 Identities=18% Similarity=0.287 Sum_probs=66.9
Q ss_pred cCCcCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEE
Q 006571 292 FVRGVSGGERKRVCIGNEII----INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLI 367 (640)
Q Consensus 292 ~~~~LSGGqrqRv~IA~aL~----~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~ 367 (640)
.+..||||||+|++||++++ .+|+++||||||++||+.+...+.+.|+.+++ +.++|+|||++.. ...||+++
T Consensus 1086 ~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~-~~~~i~~sh~~~~--~~~~d~~~ 1162 (1179)
T TIGR02168 1086 NLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK-NTQFIVITHNKGT--MEVADQLY 1162 (1179)
T ss_pred cccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc-CCEEEEEEcChhH--HHHhhhHe
Confidence 45689999999999999984 67799999999999999999999999999875 5789999999763 57799997
Q ss_pred EEc
Q 006571 368 LLG 370 (640)
Q Consensus 368 vL~ 370 (640)
.+.
T Consensus 1163 ~~~ 1165 (1179)
T TIGR02168 1163 GVT 1165 (1179)
T ss_pred eee
Confidence 654
No 452
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.88 E-value=1.6e-08 Score=102.81 Aligned_cols=164 Identities=19% Similarity=0.193 Sum_probs=98.0
Q ss_pred cceece-EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHH
Q 006571 171 DILNGI-TGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKET 249 (640)
Q Consensus 171 ~iL~~v-s~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~En 249 (640)
+-|+.+ .+=+++|.++.|.|++|+|||||...++-... . .| ..+.|+..+. +..+.
T Consensus 12 ~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~--~-~g--------------~~~~y~~~e~------~~~~~ 68 (234)
T PRK06067 12 EELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGAL--K-QG--------------KKVYVITTEN------TSKSY 68 (234)
T ss_pred HHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHH--h-CC--------------CEEEEEEcCC------CHHHH
Confidence 455554 56799999999999999999999998852111 1 11 2345555432 33332
Q ss_pred HHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhh--CCCEEEEeCCCCC--
Q 006571 250 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIII--NPSLLFLDEPTSG-- 325 (640)
Q Consensus 250 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~--~P~iLlLDEPTsg-- 325 (640)
+.-.... +... .+.+. .|.-...+.... .....+.++++.+.....++. +|+++++||||+.
T Consensus 69 ~~~~~~~--g~~~---------~~~~~-~g~l~i~~~~~~--~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~ 134 (234)
T PRK06067 69 LKQMESV--KIDI---------SDFFL-WGYLRIFPLNTE--GFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFAT 134 (234)
T ss_pred HHHHHHC--CCCh---------hHHHh-CCCceEEecccc--ccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHh
Confidence 2221111 1010 01110 011111111010 112356788999999999998 9999999999964
Q ss_pred -CCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCc------HHHhccCEEEEEcC
Q 006571 326 -LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSS------RLFHKFDKLILLGK 371 (640)
Q Consensus 326 -LD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~------~i~~~~D~i~vL~~ 371 (640)
+|......+++.++.+++.|.|+++++|+... .+..++|-++.|+.
T Consensus 135 ~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~~ 187 (234)
T PRK06067 135 YAEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSICDVYLKLRA 187 (234)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhheEEEEEEEe
Confidence 45555556666677777779999999998653 13455676666653
No 453
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.82 E-value=1.3e-08 Score=113.13 Aligned_cols=152 Identities=22% Similarity=0.257 Sum_probs=93.7
Q ss_pred cceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHH
Q 006571 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETL 250 (640)
Q Consensus 171 ~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl 250 (640)
.++++.+..+..|++++++||||+||||++..|++++. ...|. .+|++|.+|. ...++.|+|
T Consensus 244 ~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~--~~~G~-------------~kV~LI~~Dt---~RigA~EQL 305 (484)
T PRK06995 244 PVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCV--MRHGA-------------SKVALLTTDS---YRIGGHEQL 305 (484)
T ss_pred hhccCccccccCCcEEEEECCCCccHHHHHHHHHHHHH--HhcCC-------------CeEEEEeCCc---cchhHHHHH
Confidence 35677777888999999999999999999999998642 12231 2588999886 257899999
Q ss_pred HHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHH-HHHHHHHHhhCC-----CEEEEeCCCC
Q 006571 251 TYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK-RVCIGNEIIINP-----SLLFLDEPTS 324 (640)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq-Rv~IA~aL~~~P-----~iLlLDEPTs 324 (640)
.+.+.... ++........+..+...+|.+....+| .+...+++. .+.-..+++.++ .+|+||.++.
T Consensus 306 r~~AeilG---Vpv~~~~~~~Dl~~aL~~L~d~d~VLI-----DTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~ 377 (484)
T PRK06995 306 RIYGKILG---VPVHAVKDAADLRLALSELRNKHIVLI-----DTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSH 377 (484)
T ss_pred HHHHHHhC---CCeeccCCchhHHHHHHhccCCCeEEe-----CCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCc
Confidence 98766532 111111122233334456665544333 232222322 234444555554 6899999988
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Q 006571 325 GLDSTTALRIVQMLQDIAEAGKTVVTTIHQ 354 (640)
Q Consensus 325 gLD~~s~~~i~~~L~~l~~~g~TvI~~tH~ 354 (640)
+ ..+.+.++.....+.+-++.|+-
T Consensus 378 ~------~~l~~i~~~f~~~~~~g~IlTKl 401 (484)
T PRK06995 378 G------DTLNEVVQAYRGPGLAGCILTKL 401 (484)
T ss_pred H------HHHHHHHHHhccCCCCEEEEeCC
Confidence 7 33444555554445655555553
No 454
>PRK02224 chromosome segregation protein; Provisional
Probab=98.80 E-value=9.7e-09 Score=123.64 Aligned_cols=78 Identities=32% Similarity=0.456 Sum_probs=67.3
Q ss_pred CCcCCHHHHH------HHHHHHHHhhC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCC-EEEEEeCCCCcHH
Q 006571 293 VRGVSGGERK------RVCIGNEIIIN-----P-SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGK-TVVTTIHQPSSRL 359 (640)
Q Consensus 293 ~~~LSGGqrq------Rv~IA~aL~~~-----P-~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~-TvI~~tH~~~~~i 359 (640)
+..||||||+ |++|+++++.+ | +++||||||++||+.....+.+.|+.+...|. +||++||++. .
T Consensus 779 ~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~--~ 856 (880)
T PRK02224 779 PEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDE--L 856 (880)
T ss_pred hhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChH--H
Confidence 4689999999 89999998864 3 67999999999999999999999999876564 8999999975 3
Q ss_pred HhccCEEEEEcCC
Q 006571 360 FHKFDKLILLGKG 372 (640)
Q Consensus 360 ~~~~D~i~vL~~G 372 (640)
...||+++.|.+.
T Consensus 857 ~~~ad~~~~~~~~ 869 (880)
T PRK02224 857 VGAADDLVRVEKD 869 (880)
T ss_pred HHhcCeeEEeecC
Confidence 4679999999753
No 455
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.79 E-value=7.6e-09 Score=127.63 Aligned_cols=77 Identities=17% Similarity=0.242 Sum_probs=68.0
Q ss_pred cCCcCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEE
Q 006571 292 FVRGVSGGERKRVCIGNEIII----NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLI 367 (640)
Q Consensus 292 ~~~~LSGGqrqRv~IA~aL~~----~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~ 367 (640)
.+..||||||++++||++|+. +|+++|||||+++||+.....+.+.|+++++ +..+|++||++. +...||+++
T Consensus 1071 ~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~-~~~~i~~t~~~~--~~~~~d~~~ 1147 (1164)
T TIGR02169 1071 RLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG-EAQFIVVSLRSP--MIEYADRAI 1147 (1164)
T ss_pred cchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC-CCeEEEEECcHH--HHHhcceeE
Confidence 356899999999999999985 7899999999999999999999999999865 578999999964 568999998
Q ss_pred EEcC
Q 006571 368 LLGK 371 (640)
Q Consensus 368 vL~~ 371 (640)
.+..
T Consensus 1148 ~~~~ 1151 (1164)
T TIGR02169 1148 GVTM 1151 (1164)
T ss_pred eEEE
Confidence 7754
No 456
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.77 E-value=6.1e-09 Score=114.30 Aligned_cols=52 Identities=21% Similarity=0.285 Sum_probs=44.8
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC
Q 006571 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS 224 (640)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~ 224 (640)
+.+|++||+++++||+++|+|||||||||||+ .|.. .++.+|+|.++|.++.
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~-~~~sGg~I~ldg~~~~ 70 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKR-KFSEGYEFFLDATHSF 70 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCC-CCCCCCEEEECCEECC
Confidence 46899999999999999999999999999999 5544 3454558999999874
No 457
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.76 E-value=4.7e-08 Score=99.89 Aligned_cols=136 Identities=21% Similarity=0.386 Sum_probs=83.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECC-EeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCC
Q 006571 183 GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND-HPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNT 261 (640)
Q Consensus 183 Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G-~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~ 261 (640)
|.+..|+||+|+|||||.-.++=.. ..|.=++++ ... .-..++-|+.=|+
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~v----a~G~~~~g~~~~~--~~~~~Vlyi~~Ed----------------------- 51 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAM----ALGKNLFGGGLKV--TEPGRVVYLSAED----------------------- 51 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHH----hcCccccCCcccc--CCCceEEEEECCC-----------------------
Confidence 6788999999999999998887321 123211111 110 1123344554322
Q ss_pred ccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHH----------------HHhhCCCEEEEeCCCC-
Q 006571 262 LTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN----------------EIIINPSLLFLDEPTS- 324 (640)
Q Consensus 262 ~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~----------------aL~~~P~iLlLDEPTs- 324 (640)
+.++..+++..+...+++.+..+... ..+|+.|++.+++ ....+|+++++| |++
T Consensus 52 -~~~~i~~Rl~~i~~~~~~~~~~~rl~-------~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~ 122 (239)
T cd01125 52 -PREEIHRRLEAILQHLEPDDAGDRLF-------IDSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVS 122 (239)
T ss_pred -CHHHHHHHHHHHHhhcCCcCcccceE-------EeccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHH
Confidence 12233445555555555443322211 2245555555443 335799999999 775
Q ss_pred -----CCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCC
Q 006571 325 -----GLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPS 356 (640)
Q Consensus 325 -----gLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~ 356 (640)
.+|+.....+++.|++++++ |.|||+++|..-
T Consensus 123 ~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 123 FHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred hCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 47999999999999999864 899999999853
No 458
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.73 E-value=3.3e-07 Score=82.67 Aligned_cols=118 Identities=32% Similarity=0.414 Sum_probs=76.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCC
Q 006571 182 PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNT 261 (640)
Q Consensus 182 ~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~ 261 (640)
++..+.|.||+|+||||+++.|+..+.... .+-+.++........ .....
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~~~~~~~~~~-----------------~~~~~------------ 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPG-GGVIYIDGEDILEEV-----------------LDQLL------------ 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCC-CCEEEECCEEccccC-----------------HHHHH------------
Confidence 467899999999999999999997654211 134444443221100 00000
Q ss_pred ccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-----
Q 006571 262 LTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ----- 336 (640)
Q Consensus 262 ~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~----- 336 (640)
.... ........+++..+..+.++--.+|+++++||+..-.+.........
T Consensus 51 -------------~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~ 106 (148)
T smart00382 51 -------------LIIV-----------GGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELR 106 (148)
T ss_pred -------------hhhh-----------hccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhH
Confidence 0000 00113567788888888888888899999999999999998776664
Q ss_pred -HHHHHHHCCCEEEEEeC
Q 006571 337 -MLQDIAEAGKTVVTTIH 353 (640)
Q Consensus 337 -~L~~l~~~g~TvI~~tH 353 (640)
........+..+|+++|
T Consensus 107 ~~~~~~~~~~~~~i~~~~ 124 (148)
T smart00382 107 LLLLLKSEKNLTVILTTN 124 (148)
T ss_pred HHHHHHhcCCCEEEEEeC
Confidence 22222344778888988
No 459
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.60 E-value=1.7e-07 Score=101.09 Aligned_cols=124 Identities=24% Similarity=0.401 Sum_probs=76.6
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCC
Q 006571 180 VNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP 259 (640)
Q Consensus 180 i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~ 259 (640)
.+++.++.|.||+||||||+++.|.+.+.. ...|.|..-+.++..........+.|..
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~-~~~~~i~tiEdp~E~~~~~~~~~i~q~e--------------------- 176 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINK-NAAGHIITIEDPIEYVHRNKRSLINQRE--------------------- 176 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCc-CCCCEEEEEcCChhhhccCccceEEccc---------------------
Confidence 467889999999999999999999975432 2245555443332110000000010000
Q ss_pred CCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006571 260 NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ 339 (640)
Q Consensus 260 ~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~ 339 (640)
.|. + ..+ -.-+++++|-.+|+++++||+. |+.+....++
T Consensus 177 ------------------vg~----~---------~~~----~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~--- 215 (343)
T TIGR01420 177 ------------------VGL----D---------TLS----FANALRAALREDPDVILIGEMR---DLETVELALT--- 215 (343)
T ss_pred ------------------cCC----C---------CcC----HHHHHHHhhccCCCEEEEeCCC---CHHHHHHHHH---
Confidence 010 0 001 1224667888999999999997 8888765444
Q ss_pred HHHHCCCEEEEEeCCCCcHHHhccCEEEEE
Q 006571 340 DIAEAGKTVVTTIHQPSSRLFHKFDKLILL 369 (640)
Q Consensus 340 ~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL 369 (640)
.+..|.+|+.++|..+. ....+|++-|
T Consensus 216 -aa~tGh~v~~T~Ha~~~--~~~~~Rl~~~ 242 (343)
T TIGR01420 216 -AAETGHLVFGTLHTNSA--AQTIERIIDV 242 (343)
T ss_pred -HHHcCCcEEEEEcCCCH--HHHHHHHHHh
Confidence 34569999999999653 4566777654
No 460
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.57 E-value=4.8e-07 Score=108.30 Aligned_cols=69 Identities=17% Similarity=0.195 Sum_probs=54.5
Q ss_pred HHHHHhhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHh--ccCEEEEEcCCeEE
Q 006571 306 IGNEIIINPSLLFLDEPTSGL-DSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFH--KFDKLILLGKGSLL 375 (640)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgL-D~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~--~~D~i~vL~~G~iv 375 (640)
|++++..+|+++++|||+.+| |+..+..+.+.++.+.+.|.+++++||++.. +.. .++.|+-....+|.
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d-~~~s~i~~~ilen~~t~I~ 751 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSD-AANSGILDVIVESTATKIF 751 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HhhCchHHHHHHcCCccee
Confidence 677888999999999999999 7999999999999998889999999999764 333 23333333444444
No 461
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.56 E-value=5.5e-07 Score=99.67 Aligned_cols=175 Identities=19% Similarity=0.248 Sum_probs=106.3
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh------------hccCcEEEEcc
Q 006571 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK------------SLKSKIGFVTQ 236 (640)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~------------~~~~~i~yV~Q 236 (640)
...+++++ +.+.+|+.++|+|+||+|||||+++|+|... +..|.+...|..-++ .+++.+.++.+
T Consensus 150 Gi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~--~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~ 226 (440)
T TIGR01026 150 GVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTE--ADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVAT 226 (440)
T ss_pred eeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCC--CCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEEC
Confidence 35799999 9999999999999999999999999998543 345666665543221 01122223222
Q ss_pred CCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHH-HHHhhCCC
Q 006571 237 DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG-NEIIINPS 315 (640)
Q Consensus 237 ~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA-~aL~~~P~ 315 (640)
-+. ++.+-. ......-.+.+.+...| .|..+- ..+|+- .+=| |++.
T Consensus 227 ~d~-----~p~~r~------------~~~~~a~t~AE~frd~G----~~Vll~---~DslTr-----~A~A~REis---- 273 (440)
T TIGR01026 227 SDQ-----SPLLRL------------KGAYVATAIAEYFRDQG----KDVLLL---MDSVTR-----FAMAQREIG---- 273 (440)
T ss_pred CCC-----CHHHHH------------HHHHHHHHHHHHHHHCC----CCEEEE---EeChHH-----HHHHHHHHH----
Confidence 211 110000 00111112223333222 232221 112221 1111 1111
Q ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHHHHHCCC-------EEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHH
Q 006571 316 LLFLDEP--TSGLDSTTALRIVQMLQDIAEAGK-------TVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (640)
Q Consensus 316 iLlLDEP--TsgLD~~s~~~i~~~L~~l~~~g~-------TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (640)
+.+.|| +.|+|+.....+-+++.+....+. ||++.+||..+ ..+|++..+.+|+|+..+...+.
T Consensus 274 -l~~ge~P~~~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~d---pi~d~~~~i~dG~ivLsr~la~~ 346 (440)
T TIGR01026 274 -LAAGEPPATKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMNE---PIADSVRGILDGHIVLSRALAQR 346 (440)
T ss_pred -HhcCCCCcccccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCCc---chhhhhccccceEEEEecchhhC
Confidence 335675 459999999999999998876667 88889999754 56899999999999999987664
No 462
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.54 E-value=2.8e-08 Score=100.60 Aligned_cols=50 Identities=20% Similarity=0.271 Sum_probs=34.1
Q ss_pred cceece-EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCE
Q 006571 171 DILNGI-TGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH 221 (640)
Q Consensus 171 ~iL~~v-s~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~ 221 (640)
+-|+.+ .+-+++|++++|.||+|+|||||...++...... ..+.+++...
T Consensus 7 ~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~-g~~~~~is~e 57 (229)
T TIGR03881 7 EGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRD-GDPVIYVTTE 57 (229)
T ss_pred hhHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhc-CCeEEEEEcc
Confidence 345663 5679999999999999999999988665211111 1344566553
No 463
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.54 E-value=1.3e-07 Score=102.76 Aligned_cols=60 Identities=22% Similarity=0.296 Sum_probs=55.0
Q ss_pred CcCCHHHHHHHHHHHHHhh---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCC
Q 006571 294 RGVSGGERKRVCIGNEIII---------NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 356 (640)
Q Consensus 294 ~~LSGGqrqRv~IA~aL~~---------~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~ 356 (640)
..+|.||+|++.||..|+. +|+|||||||+++||+..+..+++.|.+. |.+|++++|++.
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~~qv~it~~~~~ 342 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---GVQVFVTAISLD 342 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---CCEEEEEecChh
Confidence 3599999999999999999 99999999999999999999999999753 679999999864
No 464
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.52 E-value=9.8e-08 Score=104.95 Aligned_cols=86 Identities=22% Similarity=0.286 Sum_probs=67.1
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCc--ccEEEECCEeCCh----------hccCcEEEEcc
Q 006571 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTV--GGSITYNDHPYSK----------SLKSKIGFVTQ 236 (640)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~--~G~I~~~G~~~~~----------~~~~~i~yV~Q 236 (640)
...+|+++ +.+.+|++++|+|+||+|||||+++|+|.. .+.. -|.|-.+|.++.+ ..|..+++++|
T Consensus 142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~-~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~ 219 (434)
T PRK07196 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYT-QADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPA 219 (434)
T ss_pred ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhccc-CCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecC
Confidence 35799999 999999999999999999999999999854 3321 2445555554431 12456899999
Q ss_pred CCCCCCCCCHHHHHHHHHhc
Q 006571 237 DDVLFPHLTVKETLTYAALL 256 (640)
Q Consensus 237 ~~~l~~~lTV~Enl~~~~~~ 256 (640)
+...+..+++.+++.+.+..
T Consensus 220 d~s~~~rl~a~e~a~~iAEy 239 (434)
T PRK07196 220 DESPLMRIKATELCHAIATY 239 (434)
T ss_pred CCChhhhHHHHHHHHHHHHH
Confidence 99999999999999876654
No 465
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.51 E-value=6.3e-09 Score=117.05 Aligned_cols=167 Identities=18% Similarity=0.198 Sum_probs=99.4
Q ss_pred cceece-EEEEeCCeEEEEECCCCCcHHHHHHHHH--cCCCCCCcccEEEECCEeCChhcc---CcEEEEccCCCCCCCC
Q 006571 171 DILNGI-TGSVNPGEVLALMGPSGSGKTTLLNLLS--GRLMEPTVGGSITYNDHPYSKSLK---SKIGFVTQDDVLFPHL 244 (640)
Q Consensus 171 ~iL~~v-s~~i~~Ge~~aIvGpsGsGKSTLl~~L~--G~~~~~~~~G~I~~~G~~~~~~~~---~~i~yV~Q~~~l~~~l 244 (640)
+-||.+ .+=+.+|..+.|.||+|||||||..-++ |... .. ..-+++......++++ +.+|+-.++..--.
T Consensus 8 ~gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~-~g-e~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~~g-- 83 (484)
T TIGR02655 8 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIH-FD-EPGVFVTFEESPQDIIKNARSFGWDLQKLVDEG-- 83 (484)
T ss_pred hhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh-CC-CCEEEEEEecCHHHHHHHHHHcCCCHHHHhhcC--
Confidence 456665 5689999999999999999999988763 3211 11 2335555443322221 23444443211000
Q ss_pred CHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHH--HHHhhCCCEEEEeCC
Q 006571 245 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG--NEIIINPSLLFLDEP 322 (640)
Q Consensus 245 TV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA--~aL~~~P~iLlLDEP 322 (640)
++.+ ... .+. .....+++.+++.+..+.. ...+|+|++|||.|+ .+|..+|+..
T Consensus 84 ----~l~~---~~~---~~~----~~~~~~~~~~~l~~~l~~i-----~~~ls~g~~qRVvIDSl~aL~~~~~~~----- 139 (484)
T TIGR02655 84 ----KLFI---LDA---SPD----PEGQDVVGGFDLSALIERI-----NYAIRKYKAKRVSIDSVTAVFQQYDAV----- 139 (484)
T ss_pred ----ceEE---Eec---Cch----hccccccccCCHHHHHHHH-----HHHHHHhCCcEEEEeehhHhhhhcCch-----
Confidence 0000 000 000 0011122334444333332 357999999999999 6666665543
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcH-------H-HhccCEEEEEc
Q 006571 323 TSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSR-------L-FHKFDKLILLG 370 (640)
Q Consensus 323 TsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~-------i-~~~~D~i~vL~ 370 (640)
...+..+.++++.+++.|.|+|+++|+.... + ..+||.|+.|+
T Consensus 140 -----~~~r~~l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 140 -----SVVRREIFRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred -----HHHHHHHHHHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 4677889999999888899999999986420 1 45789999987
No 466
>PRK14079 recF recombination protein F; Provisional
Probab=98.51 E-value=2e-07 Score=100.75 Aligned_cols=76 Identities=16% Similarity=0.216 Sum_probs=63.0
Q ss_pred cCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCE
Q 006571 295 GVSGGERKRVCIGNEII---------INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDK 365 (640)
Q Consensus 295 ~LSGGqrqRv~IA~aL~---------~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~ 365 (640)
-+|+||+|++.+|..|+ .+|++++||||+++||...+..+.+.|... ..++|.+++.+ ..+|+
T Consensus 263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~---~q~~it~t~~~-----~~~~~ 334 (349)
T PRK14079 263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL---PQAIVAGTEAP-----PGAAL 334 (349)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC---CcEEEEcCCCC-----CCCce
Confidence 48999999999999998 899999999999999999999999888643 23555555432 56999
Q ss_pred EEEEcCCeEEEec
Q 006571 366 LILLGKGSLLYFG 378 (640)
Q Consensus 366 i~vL~~G~iv~~G 378 (640)
++.+.+|++.-..
T Consensus 335 ~~~~~~~~~~~~~ 347 (349)
T PRK14079 335 TLRIEAGVFTPEA 347 (349)
T ss_pred EEEEeccEecCCC
Confidence 9999999875433
No 467
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.48 E-value=3.3e-07 Score=90.08 Aligned_cols=84 Identities=25% Similarity=0.176 Sum_probs=62.3
Q ss_pred ceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC-hhccCcEEEEccCC--CCCCCCCHHH
Q 006571 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-KSLKSKIGFVTQDD--VLFPHLTVKE 248 (640)
Q Consensus 172 iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~-~~~~~~i~yV~Q~~--~l~~~lTV~E 248 (640)
..+=+.+.+++|+.++|+||||||||||+++|+|.+. +..|.|.+.+..-. ...+..++++.|.+ ...+..|+.+
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~--~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIP--PDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMAD 91 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcC--CCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHH
Confidence 4555667799999999999999999999999998653 45799999775321 12234567766554 3466789999
Q ss_pred HHHHHHhcc
Q 006571 249 TLTYAALLR 257 (640)
Q Consensus 249 nl~~~~~~~ 257 (640)
.+....+.+
T Consensus 92 ~l~~~lR~~ 100 (186)
T cd01130 92 LLRSALRMR 100 (186)
T ss_pred HHHHHhccC
Confidence 998876543
No 468
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.44 E-value=6.1e-07 Score=108.49 Aligned_cols=78 Identities=27% Similarity=0.423 Sum_probs=69.0
Q ss_pred cCCcCCHHHHHHHHHHHHHh------hC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhcc
Q 006571 292 FVRGVSGGERKRVCIGNEII------IN--PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKF 363 (640)
Q Consensus 292 ~~~~LSGGqrqRv~IA~aL~------~~--P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~ 363 (640)
.+..|||||+=.++||.+|+ .+ =++|||||||..||+.+...+++.|.++...+++|++|||+. ++.+.+
T Consensus 812 ~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~e--el~e~~ 889 (908)
T COG0419 812 PIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVE--ELKERA 889 (908)
T ss_pred ccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChH--HHHHhC
Confidence 56789999999988877764 35 599999999999999999999999999998899999999994 467889
Q ss_pred CEEEEEcC
Q 006571 364 DKLILLGK 371 (640)
Q Consensus 364 D~i~vL~~ 371 (640)
|.++.+..
T Consensus 890 ~~~i~V~k 897 (908)
T COG0419 890 DVRIRVKK 897 (908)
T ss_pred CeEEEEEe
Confidence 99998875
No 469
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.40 E-value=8e-07 Score=97.94 Aligned_cols=83 Identities=20% Similarity=0.254 Sum_probs=64.4
Q ss_pred CeeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECC---EeC
Q 006571 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND---HPY 223 (640)
Q Consensus 147 ~~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G---~~~ 223 (640)
+..++.++++..|. ....+++.++ .|.+||.++|+||||||||||+++|++.. . +..|.|.+.| +++
T Consensus 137 p~~~~r~~v~~~l~-------TGi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~-~-pd~gvv~liGergrev 206 (450)
T PRK06002 137 PPAMTRARVETGLR-------TGVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARAD-A-FDTVVIALVGERGREV 206 (450)
T ss_pred CCCeEeecceEEcC-------CCcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCC-C-CCeeeeeecccCCccH
Confidence 44689999998873 2357899996 99999999999999999999999999743 3 4578888864 544
Q ss_pred Ch--------hccCcEEEEccCCC
Q 006571 224 SK--------SLKSKIGFVTQDDV 239 (640)
Q Consensus 224 ~~--------~~~~~i~yV~Q~~~ 239 (640)
.. ..++.|++|+|.+.
T Consensus 207 ~e~~~~~l~~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 207 REFLEDTLADNLKKAVAVVATSDE 230 (450)
T ss_pred HHHhHHHHHHhhCCeEEEEEcCCC
Confidence 21 12467999999764
No 470
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.40 E-value=3.1e-07 Score=90.91 Aligned_cols=112 Identities=18% Similarity=0.215 Sum_probs=65.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHhc-cCCCCcc
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALL-RLPNTLT 263 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~-~~~~~~~ 263 (640)
+++|.||||||||||.+.|++.+. +|. +.++++|+.+. .++..+........ ..|...
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~----~~~---------------~~v~~~D~~~~-~~~~~~~~~~~~~~~~~~~~~- 59 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG----NPK---------------VVIISQDSYYK-DLSHEELEERKNNNYDHPDAF- 59 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC----CCC---------------eEEEEeccccc-ccccccHHHhccCCCCCCCcc-
Confidence 589999999999999999998541 222 34444444332 22333332221110 111111
Q ss_pred HHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 006571 264 KQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 328 (640)
Q Consensus 264 ~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~ 328 (640)
..+...+.+..+...+..+. +....|.|++++..+ .+.+|+++|+|+|..+.++
T Consensus 60 ---~~~~~~~~l~~l~~~~~~~~-----p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 60 ---DFDLLISHLQDLKNGKSVEI-----PVYDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred ---cHHHHHHHHHHHHCCCCEec-----cccccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 12233455555544332222 234678888776555 5788999999999999986
No 471
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.33 E-value=1e-06 Score=105.38 Aligned_cols=138 Identities=20% Similarity=0.230 Sum_probs=86.1
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHH
Q 006571 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKET 249 (640)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~En 249 (640)
..|-+|+++. ..+.++.|.|||++||||+||.++-...- ..-| .|||-+..- +++.+.
T Consensus 595 ~~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~il-Aq~G-----------------~~VPa~~a~---i~~~d~ 652 (854)
T PRK05399 595 PFVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVLL-AQIG-----------------SFVPAESAR---IGIVDR 652 (854)
T ss_pred ceEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHHH-HhcC-----------------CceeccceE---ecccCe
Confidence 4577788887 67789999999999999999998732110 0112 233322211 111111
Q ss_pred HHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhh--CCCEEEEeCC---CC
Q 006571 250 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIII--NPSLLFLDEP---TS 324 (640)
Q Consensus 250 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~--~P~iLlLDEP---Ts 324 (640)
| ...+|-. |. ...++|-=+.....++..|-. +++++|+||| |+
T Consensus 653 I------------------------~triga~---d~-----i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs 700 (854)
T PRK05399 653 I------------------------FTRIGAS---DD-----LASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTS 700 (854)
T ss_pred e------------------------eeccCcc---cc-----cccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCC
Confidence 1 1111211 11 124566666666666666654 8999999999 99
Q ss_pred CCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCE
Q 006571 325 GLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDK 365 (640)
Q Consensus 325 gLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~ 365 (640)
.+|..+ .....++.+.+. +.++|++||.. ++.+++++
T Consensus 701 ~~dg~a--ia~aile~l~~~~~~~~l~aTH~~--el~~l~~~ 738 (854)
T PRK05399 701 TYDGLS--IAWAVAEYLHDKIGAKTLFATHYH--ELTELEEK 738 (854)
T ss_pred cchhHH--HHHHHHHHHHhcCCceEEEEechH--HHHHHhhh
Confidence 999554 455566666665 58999999993 46677765
No 472
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.29 E-value=9.7e-07 Score=110.27 Aligned_cols=60 Identities=25% Similarity=0.388 Sum_probs=53.2
Q ss_pred CCcCCHHHHHHHH----HHHH--------HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCC
Q 006571 293 VRGVSGGERKRVC----IGNE--------IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 355 (640)
Q Consensus 293 ~~~LSGGqrqRv~----IA~a--------L~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~ 355 (640)
..+||||||||++ +|++ +..+|++++|||||+|||+.+...+++++.++ |.++|+++|.+
T Consensus 1245 ~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1245 FGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---DLDFVMTSERE 1316 (1353)
T ss_pred ccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---CCCEEEEccch
Confidence 4789999999996 5655 55899999999999999999999999999887 78999999874
No 473
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.27 E-value=2.6e-05 Score=93.28 Aligned_cols=49 Identities=20% Similarity=0.239 Sum_probs=43.8
Q ss_pred HHhhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHHCCCEEEEEeCCCCc
Q 006571 309 EIIINPSLLFLDEPTSGLD-STTALRIVQMLQDIAEAGKTVVTTIHQPSS 357 (640)
Q Consensus 309 aL~~~P~iLlLDEPTsgLD-~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~ 357 (640)
.+..+|.++++|||...|| +..+..+.+.++.+.+.|..++++||.+..
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d 687 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVED 687 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 3456899999999999999 889999999999998889999999999754
No 474
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.25 E-value=2.5e-06 Score=105.74 Aligned_cols=166 Identities=16% Similarity=0.246 Sum_probs=91.1
Q ss_pred ceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHH
Q 006571 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLT 251 (640)
Q Consensus 172 iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~ 251 (640)
+..=+++..+++++++|+|++|+|||||++.+.+++.. ...|.+++++..+.... . .+-.++...+ +..
T Consensus 196 l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~-~F~g~vfv~~~~v~~~~-~--~~~~~~~~~~-------~~~ 264 (1153)
T PLN03210 196 MSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSR-QFQSSVFIDRAFISKSM-E--IYSSANPDDY-------NMK 264 (1153)
T ss_pred HHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhh-cCCeEEEeeccccccch-h--hccccccccc-------chh
Confidence 33445677889999999999999999999999876643 34788988763221100 0 0000100000 000
Q ss_pred HHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 006571 252 YAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTA 331 (640)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~ 331 (640)
. ...++.+.++++..++. +..+ ++.|+| |..++-+|+||+- |..
T Consensus 265 ~------------~l~~~~l~~il~~~~~~-----------~~~~-~~~~~~------L~~krvLLVLDdv----~~~-- 308 (1153)
T PLN03210 265 L------------HLQRAFLSEILDKKDIK-----------IYHL-GAMEER------LKHRKVLIFIDDL----DDQ-- 308 (1153)
T ss_pred H------------HHHHHHHHHHhCCCCcc-----------cCCH-HHHHHH------HhCCeEEEEEeCC----CCH--
Confidence 0 01122233333333321 1122 566666 3355667888984 433
Q ss_pred HHHHHHHHHHH---HCCCEEEEEeCCCCcHHHhc-cCEEEEEcCCeEEEecChHHHHHHHHhcCC
Q 006571 332 LRIVQMLQDIA---EAGKTVVTTIHQPSSRLFHK-FDKLILLGKGSLLYFGKASEAMAYFSSIGC 392 (640)
Q Consensus 332 ~~i~~~L~~l~---~~g~TvI~~tH~~~~~i~~~-~D~i~vL~~G~iv~~G~~~~~~~~f~~~g~ 392 (640)
..++.|+... ..|.+||+|||+... +... +|+++-+.. =+.+++.+.|....+
T Consensus 309 -~~l~~L~~~~~~~~~GsrIIiTTrd~~v-l~~~~~~~~~~v~~------l~~~ea~~LF~~~Af 365 (1153)
T PLN03210 309 -DVLDALAGQTQWFGSGSRIIVITKDKHF-LRAHGIDHIYEVCL------PSNELALEMFCRSAF 365 (1153)
T ss_pred -HHHHHHHhhCccCCCCcEEEEEeCcHHH-HHhcCCCeEEEecC------CCHHHHHHHHHHHhc
Confidence 3344444432 348899999999542 2222 576655531 145677887876544
No 475
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.25 E-value=6.6e-07 Score=87.37 Aligned_cols=66 Identities=23% Similarity=0.339 Sum_probs=47.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChh--cc-CcEEEEccCCCCCCCCCHHHHHHHH
Q 006571 182 PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS--LK-SKIGFVTQDDVLFPHLTVKETLTYA 253 (640)
Q Consensus 182 ~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~--~~-~~i~yV~Q~~~l~~~lTV~Enl~~~ 253 (640)
+|++++|+|+||||||||+++|+|.+. -+.++|.++... .+ ...++.+|+...++..++.+++.+.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~------~~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~ 70 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFS------AKFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASYS 70 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC------CEEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHHH
Confidence 699999999999999999999998653 157888876421 22 2356777765555555666666553
No 476
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=98.16 E-value=4.3e-05 Score=79.23 Aligned_cols=36 Identities=33% Similarity=0.467 Sum_probs=32.7
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 006571 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G 205 (640)
-+.|+++.+-+.+|+++.|.|++|+|||||+..++.
T Consensus 17 ~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~ 52 (271)
T cd01122 17 FPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYAL 52 (271)
T ss_pred cceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 457899889999999999999999999999998874
No 477
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=98.16 E-value=6e-05 Score=90.24 Aligned_cols=46 Identities=24% Similarity=0.264 Sum_probs=42.0
Q ss_pred hhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHHCCCEEEEEeCCCC
Q 006571 311 IINPSLLFLDEPTSGLD-STTALRIVQMLQDIAEAGKTVVTTIHQPS 356 (640)
Q Consensus 311 ~~~P~iLlLDEPTsgLD-~~s~~~i~~~L~~l~~~g~TvI~~tH~~~ 356 (640)
-.+|+++++|||+.+|| +..+..+.+.++.+.+.|.+++++||++.
T Consensus 633 ~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~ 679 (811)
T PRK13873 633 DGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLA 679 (811)
T ss_pred cCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHH
Confidence 45899999999999999 78899999999999888999999999975
No 478
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.10 E-value=5.4e-06 Score=89.99 Aligned_cols=53 Identities=21% Similarity=0.300 Sum_probs=46.3
Q ss_pred eeEEEEeEEEEEeecccccccccccee-----------ceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILN-----------GITGSVNPGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~-----------~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
..+.|+||++.|+ .++.+|+ |+++.|.+|+.++|+||+|+|||||++.|+..+
T Consensus 129 ~ri~Fe~LTf~YP-------~er~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I 192 (415)
T TIGR00767 129 NRVLFENLTPLYP-------NERLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAI 192 (415)
T ss_pred CCeEEEEeeecCC-------CccceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhh
Confidence 3699999999984 2346886 999999999999999999999999999999643
No 479
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.09 E-value=7.6e-06 Score=90.42 Aligned_cols=109 Identities=17% Similarity=0.215 Sum_probs=69.3
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECC---EeCCh----hcc---CcEEEE-----
Q 006571 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND---HPYSK----SLK---SKIGFV----- 234 (640)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G---~~~~~----~~~---~~i~yV----- 234 (640)
..+++++ +.+.+|+.++|+|+||+|||||+++|+|.... ...|.|.+.| +++.+ .++ .+.+++
T Consensus 152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~-~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats 229 (442)
T PRK06315 152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEE-ADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTS 229 (442)
T ss_pred EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhccccc-CCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCC
Confidence 4689998 99999999999999999999999999985532 3346777755 44421 121 235555
Q ss_pred ccCCC--CCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCC
Q 006571 235 TQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE 281 (640)
Q Consensus 235 ~Q~~~--l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 281 (640)
+|++. +.+.+ +...+.-..+.+....+...+...++.+++++++|.
T Consensus 230 ~q~p~~rlnp~~-va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~ 277 (442)
T PRK06315 230 DQSSQLRLNAAY-VGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLA 277 (442)
T ss_pred CCCHHHHhhHHH-HHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcC
Confidence 88763 23322 333333222222111123445667788888888884
No 480
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.05 E-value=3.5e-05 Score=70.19 Aligned_cols=55 Identities=18% Similarity=0.288 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-----CCCEEEEEeCCCC
Q 006571 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-----AGKTVVTTIHQPS 356 (640)
Q Consensus 301 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-----~g~TvI~~tH~~~ 356 (640)
++..........++.++++||.-.. ++.....+.+.+..... .+.++|++++...
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 4445555666778999999998765 56666778888877643 4678888888643
No 481
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.03 E-value=6.1e-06 Score=66.41 Aligned_cols=36 Identities=42% Similarity=0.734 Sum_probs=29.3
Q ss_pred eeceEEEEeC-CeEEEEECCCCCcHHHHHHHHHcCCC
Q 006571 173 LNGITGSVNP-GEVLALMGPSGSGKTTLLNLLSGRLM 208 (640)
Q Consensus 173 L~~vs~~i~~-Ge~~aIvGpsGsGKSTLl~~L~G~~~ 208 (640)
.++.++++.+ |+++.|.||||||||||+++|.=.++
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHc
Confidence 4456777876 56999999999999999999985444
No 482
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.03 E-value=5.7e-06 Score=84.06 Aligned_cols=72 Identities=17% Similarity=0.284 Sum_probs=48.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccE----EEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHh
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGS----ITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAAL 255 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~----I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~ 255 (640)
.+..+++|.||||||||||.+.|++.+. +.+|. |.+|+.......+...+++++.+. .+.+++.+.+.+...
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~--~~~g~~~v~i~~D~~~~~~~~~~~~g~~~~~~~-~~~~d~~~~~~~l~~ 106 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQ--QDGELPAIQVPMDGFHLDNAVLDAHGLRPRKGA-PETFDVAGLAALLRR 106 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhh--hccCCceEEEecccccCCHHHHHhcccccccCC-CCCCCHHHHHHHHHH
Confidence 4568999999999999999999998764 34676 555654444333445677766433 345566666655433
No 483
>PRK01889 GTPase RsgA; Reviewed
Probab=98.02 E-value=1.1e-05 Score=87.46 Aligned_cols=78 Identities=23% Similarity=0.334 Sum_probs=59.7
Q ss_pred ceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC-hhccCcEEEEccCCCCCCCCCHHHHH
Q 006571 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-KSLKSKIGFVTQDDVLFPHLTVKETL 250 (640)
Q Consensus 172 iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~-~~~~~~i~yV~Q~~~l~~~lTV~Enl 250 (640)
-++.+.-.+++|++++|+|+||+|||||+|.|+|... +..|+|.+++.... ...++++.+++|+..++++ ....++
T Consensus 184 gl~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~--~~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~Dt-pG~~~~ 260 (356)
T PRK01889 184 GLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEV--QKTGAVREDDSKGRHTTTHRELHPLPSGGLLIDT-PGMREL 260 (356)
T ss_pred cHHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcc--cceeeEEECCCCCcchhhhccEEEecCCCeecCC-Cchhhh
Confidence 3555666678999999999999999999999998654 45899999875432 2235679999999888864 566665
Q ss_pred HH
Q 006571 251 TY 252 (640)
Q Consensus 251 ~~ 252 (640)
.+
T Consensus 261 ~l 262 (356)
T PRK01889 261 QL 262 (356)
T ss_pred cc
Confidence 54
No 484
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.00 E-value=6.4e-05 Score=73.47 Aligned_cols=67 Identities=13% Similarity=0.200 Sum_probs=44.5
Q ss_pred HHHHHHHHcCCCccccccccCccCCcCCHHHHHHHH--HHHHHhh-CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC
Q 006571 270 RAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC--IGNEIII-NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 344 (640)
Q Consensus 270 ~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~--IA~aL~~-~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~ 344 (640)
.+.+.++..+++- -.+++ ....+++||+|++. +++.+-. +++++ |+|++|.....++.+.|.++.+.
T Consensus 126 ~i~~~l~~~~~~~---iiv~n-K~Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 126 QMIEWLKEYGIPV---LIVLT-KADKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred HHHHHHHHcCCcE---EEEEE-CcccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHHHhcC
Confidence 3445555555431 12222 34568999999987 5555543 34443 99999999999999999987654
No 485
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=97.98 E-value=0.00018 Score=78.55 Aligned_cols=159 Identities=19% Similarity=0.280 Sum_probs=101.1
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeC--ChhccCcEEEEccCCCCCCCCCHHHHHHHHHh
Q 006571 178 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY--SKSLKSKIGFVTQDDVLFPHLTVKETLTYAAL 255 (640)
Q Consensus 178 ~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~--~~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~ 255 (640)
+-|++| ++.|+|.+=-||||||++|.--.++. .-| ||++. +. .....+--+|-- .
T Consensus 240 MGIp~G-vTlIvGGGyHGKSTLL~Ale~GVYnH-ipG----DGRE~VVT~---~~avkirAEDGR----~---------- 296 (448)
T PF09818_consen 240 MGIPKG-VTLIVGGGYHGKSTLLEALERGVYNH-IPG----DGREFVVTD---PDAVKIRAEDGR----S---------- 296 (448)
T ss_pred EeeCCc-EEEEECCCCccHHHHHHHHHhcccCC-CCC----CCceEEEEC---CCceEEEecCCc----e----------
Confidence 457888 99999999999999999998544431 112 33321 00 000011111100 0
Q ss_pred ccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC-----CHHH
Q 006571 256 LRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGL-----DSTT 330 (640)
Q Consensus 256 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgL-----D~~s 330 (640)
+. ...+.-++. +|+...||.- -.-.+=||-.-|=..|..||=...++||+||=||+- |...
T Consensus 297 ------V~----~vDISpFI~--~LP~g~dT~~--FsT~~ASGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rM 362 (448)
T PF09818_consen 297 ------VE----GVDISPFIN--NLPGGKDTTC--FSTENASGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERM 362 (448)
T ss_pred ------Ee----CccchHHHh--hCCCCCCCCc--ccccCCCchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHH
Confidence 00 000112233 3455555531 112458999999999999999999999999999975 5555
Q ss_pred HHHH----------HHHHHHHH-HCCCEEEEEeCCCCcHHHhccCEEEEEcCCeE
Q 006571 331 ALRI----------VQMLQDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (640)
Q Consensus 331 ~~~i----------~~~L~~l~-~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~i 374 (640)
+..+ ++.++.+. +.|.+.|+++-- +.+.+..+|+|++|++=+.
T Consensus 363 q~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Gg-sgdy~~vAD~Vi~Md~Y~~ 416 (448)
T PF09818_consen 363 QALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGG-SGDYFDVADRVIMMDEYRP 416 (448)
T ss_pred HHhhccCCCCcchHHHHHHHHHHHcCceEEEEecc-chhhHhhCCEEEEecCccc
Confidence 5554 56677774 458877777755 5568899999999998664
No 486
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=97.98 E-value=8.8e-06 Score=76.32 Aligned_cols=64 Identities=14% Similarity=0.174 Sum_probs=41.1
Q ss_pred HHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHH-----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 006571 270 RAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEI-----IINPSLLFLDEPTSGLDSTTALRIVQMLQDI 341 (640)
Q Consensus 270 ~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL-----~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l 341 (640)
.+.+.+...+.+- ..+.+ +...++++++++....... ...|+++ |+|++|.....++++.|.++
T Consensus 101 ~~~~~l~~~~~~v---i~v~n-K~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 101 EMLDWLEELGIPF---LVVLT-KADKLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred HHHHHHHHcCCCE---EEEEE-chhcCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCCCCHHHHHHHHHHh
Confidence 3445565554321 12222 2345789988887666553 2345555 99999999999999988764
No 487
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.97 E-value=2.4e-05 Score=87.36 Aligned_cols=62 Identities=16% Similarity=0.181 Sum_probs=42.8
Q ss_pred hCCCEEEEeCCCCCC----C-----HHHHHHHHHHHHHHHH-CCCEEEEEeCCCCc-------HHHhccCEEEEEcCCe
Q 006571 312 INPSLLFLDEPTSGL----D-----STTALRIVQMLQDIAE-AGKTVVTTIHQPSS-------RLFHKFDKLILLGKGS 373 (640)
Q Consensus 312 ~~P~iLlLDEPTsgL----D-----~~s~~~i~~~L~~l~~-~g~TvI~~tH~~~~-------~i~~~~D~i~vL~~G~ 373 (640)
.+|+++++|.-++=. + .....+++..|.++++ .|.|++++.|...+ .+..++|.|+.|+.++
T Consensus 169 ~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~~~ 247 (454)
T TIGR00416 169 ENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR 247 (454)
T ss_pred cCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEeccC
Confidence 479999999876521 1 2234556666777754 59999999997432 1456789999998654
No 488
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.96 E-value=5.1e-06 Score=82.46 Aligned_cols=56 Identities=32% Similarity=0.393 Sum_probs=42.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccC
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQD 237 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~ 237 (640)
++|.+++|+|+||||||||.+.|++.+.. ...|.+.++|.++...+...++|.+|+
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~-~~~~~~~ld~d~~~~~~~~~~~~~~~~ 77 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHE-LGVSTYLLDGDNVRHGLCSDLGFSDAD 77 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHh-CCCCEEEEcCEeHHhhhhhcCCcCccc
Confidence 67899999999999999999999986642 235789999988754444445555554
No 489
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=97.94 E-value=1.9e-05 Score=68.53 Aligned_cols=48 Identities=33% Similarity=0.538 Sum_probs=36.8
Q ss_pred CCcCCHHHHH-HHHHHHHH------hh------CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006571 293 VRGVSGGERK-RVCIGNEI------II------NPSLLFLDEPTSGLDSTTALRIVQMLQD 340 (640)
Q Consensus 293 ~~~LSGGqrq-Rv~IA~aL------~~------~P~iLlLDEPTsgLD~~s~~~i~~~L~~ 340 (640)
..++|||||| .+.++.++ -. .|.+++||||+++||+.....+++.|++
T Consensus 30 ~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 30 FGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp GGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred CCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 4689999994 44444333 22 3799999999999999999999999874
No 490
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.93 E-value=3.9e-06 Score=83.87 Aligned_cols=27 Identities=37% Similarity=0.535 Sum_probs=25.1
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
++|++++|+||||||||||++.|++.+
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999999854
No 491
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.93 E-value=7.7e-06 Score=85.95 Aligned_cols=73 Identities=10% Similarity=0.145 Sum_probs=48.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEe---CChhccCcEEEEccCCCCCCCCCHHHHHHHHHhcc
Q 006571 184 EVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP---YSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLR 257 (640)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~---~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~ 257 (640)
.++||.||||||||||+++|.+.+...+.+|.|.+-+.| .....++..++. |+..+.+.+++.+.+.+-..++
T Consensus 63 ~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~~l~~~g~~-~~~g~P~s~D~~~l~~~L~~Lk 138 (290)
T TIGR00554 63 YIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQVLKERNLM-KKKGFPESYDMHRLVKFLSDLK 138 (290)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHHHHHHcCCc-cccCCChhccHHHHHHHHHHHH
Confidence 699999999999999999999866432346776664433 333333445544 5555666777777777655443
No 492
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.93 E-value=1.1e-05 Score=79.34 Aligned_cols=37 Identities=38% Similarity=0.556 Sum_probs=30.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC
Q 006571 183 GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS 224 (640)
Q Consensus 183 Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~ 224 (640)
|++++|+||||||||||+++|++... ..+.+++..+.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~-----~~~~~~~~~~~ 38 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQ-----TQLLVAHRYIT 38 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC-----CeEEEcCEECC
Confidence 78999999999999999999998542 25777776654
No 493
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=97.91 E-value=1.3e-05 Score=78.91 Aligned_cols=72 Identities=17% Similarity=0.195 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCc-HHHhccCEEEEEcCC
Q 006571 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSS-RLFHKFDKLILLGKG 372 (640)
Q Consensus 299 GqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~-~i~~~~D~i~vL~~G 372 (640)
|+-+|..||..+..+|+.+..+| +.+||....++.+.+++..+.|.+||+.+|.+.. .+...||.+++++.+
T Consensus 61 g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~ 133 (188)
T TIGR00152 61 GELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDVS 133 (188)
T ss_pred CCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEECC
Confidence 78899999999999999988877 7899999999999998876557899999998732 355789999887654
No 494
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.91 E-value=9e-06 Score=86.73 Aligned_cols=71 Identities=17% Similarity=0.208 Sum_probs=53.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----------hccCcEEEEccCCCCCCCCCHHHHH
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----------SLKSKIGFVTQDDVLFPHLTVKETL 250 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----------~~~~~i~yV~Q~~~l~~~lTV~Enl 250 (640)
++|++++++||||+||||++..|++.+. ..+|+|.+.+.|..+ ..+..+.+++|.....|..++.+++
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~--~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l 189 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYK--AQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAI 189 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH--hcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHH
Confidence 5789999999999999999999998764 346899988877521 1245688998876555555666666
Q ss_pred HHH
Q 006571 251 TYA 253 (640)
Q Consensus 251 ~~~ 253 (640)
...
T Consensus 190 ~~~ 192 (318)
T PRK10416 190 QAA 192 (318)
T ss_pred HHH
Confidence 543
No 495
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=97.88 E-value=7.6e-05 Score=80.92 Aligned_cols=123 Identities=24% Similarity=0.396 Sum_probs=71.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCC-CCcccEEEECCEeCCh---hccCcEEEEccCCCCCCCCCHHHHHHHHHhc
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSGRLME-PTVGGSITYNDHPYSK---SLKSKIGFVTQDDVLFPHLTVKETLTYAALL 256 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~-~~~~G~I~~~G~~~~~---~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~ 256 (640)
++|.+++|.||+||||||+|++|++.+.. ++..+.|.....|+.- ..+...+.|.|... +.
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v--~~------------- 196 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEI--PR------------- 196 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeec--cc-------------
Confidence 58999999999999999999999985532 2223355544444321 11222344444321 00
Q ss_pred cCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH
Q 006571 257 RLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ 336 (640)
Q Consensus 257 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~ 336 (640)
+ ..++..+ |-.+|=.+|+++++.|-- |.++....++
T Consensus 197 ----------------------------~-------~~~~~~~------l~~aLR~~Pd~i~vGEiR---d~et~~~al~ 232 (358)
T TIGR02524 197 ----------------------------H-------LNNFAAG------VRNALRRKPHAILVGEAR---DAETISAALE 232 (358)
T ss_pred ----------------------------c-------ccCHHHH------HHHHhccCCCEEeeeeeC---CHHHHHHHHH
Confidence 0 0001111 112556789999999943 6665544433
Q ss_pred HHHHHHHCCCEEEEEeCCCCcHHHhccCEEEE
Q 006571 337 MLQDIAEAGKTVVTTIHQPSSRLFHKFDKLIL 368 (640)
Q Consensus 337 ~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~v 368 (640)
.+..|..|+.|.|-.+ +....+|++-
T Consensus 233 ----aa~tGh~v~tTlHa~~--~~~~i~Rl~~ 258 (358)
T TIGR02524 233 ----AALTGHPVYTTLHSSG--VAETIRRLVG 258 (358)
T ss_pred ----HHHcCCcEEEeeccCC--HHHHHHHHHH
Confidence 2446889999999754 3455555544
No 496
>PRK08149 ATP synthase SpaL; Validated
Probab=97.88 E-value=2e-05 Score=86.80 Aligned_cols=68 Identities=22% Similarity=0.330 Sum_probs=53.3
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--cccEEEECCEeCCh----h----ccCcEEEEccCC
Q 006571 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT--VGGSITYNDHPYSK----S----LKSKIGFVTQDD 238 (640)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~--~~G~I~~~G~~~~~----~----~~~~i~yV~Q~~ 238 (640)
...+++++ +.+.+||.++|+|+||+|||||+++|++.. .+. .-|.|-.+|+++.. . ..+++++|+...
T Consensus 138 Gi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~-~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~s 215 (428)
T PRK08149 138 GVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHS-EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATS 215 (428)
T ss_pred CcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCC-CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECC
Confidence 35799999 999999999999999999999999999743 332 12888889988642 1 235688887654
No 497
>PRK13764 ATPase; Provisional
Probab=97.88 E-value=4.4e-05 Score=87.41 Aligned_cols=64 Identities=19% Similarity=0.387 Sum_probs=48.6
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeC---------------CCCcHHHhccCEEEEEcCCeE
Q 006571 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIH---------------QPSSRLFHKFDKLILLGKGSL 374 (640)
Q Consensus 310 L~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH---------------~~~~~i~~~~D~i~vL~~G~i 374 (640)
|..+|+++++||.-. .++ ++.+..++..|..++.+.| ++. .+...+|+|+.+++|++
T Consensus 321 LR~rPD~IivGEiRd---~Et----~~~~~~l~~ag~GvigTlHA~sa~~Ai~Rl~~~v~lg-~i~~iID~IV~I~~G~I 392 (602)
T PRK13764 321 LLVRPDYTIYDEMRK---TED----FKIFADMRLAGVGMVGVVHATRPIDAIQRFIGRVELG-MIPQIVDTVIFIEDGEV 392 (602)
T ss_pred HhhCCCEEEECCCCC---HHH----HHHHHHHHHcCCeEEEEECCCCHHHHHHHHHhhhhhc-hHHHhhcEEEEEeCCEE
Confidence 678999999999984 333 4444445555888999999 644 46678999999999999
Q ss_pred --EEecChH
Q 006571 375 --LYFGKAS 381 (640)
Q Consensus 375 --v~~G~~~ 381 (640)
+|.++..
T Consensus 393 ~~v~~~~~~ 401 (602)
T PRK13764 393 SKVYDLEFT 401 (602)
T ss_pred EEEEeeeeE
Confidence 7877643
No 498
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.87 E-value=3.7e-05 Score=89.02 Aligned_cols=111 Identities=21% Similarity=0.283 Sum_probs=68.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCC------CcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHhc
Q 006571 183 GEVLALMGPSGSGKTTLLNLLSGRLMEP------TVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALL 256 (640)
Q Consensus 183 Ge~~aIvGpsGsGKSTLl~~L~G~~~~~------~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~ 256 (640)
.+.++|+||||+|||||.++|.+..... ...+-|.+||..+....+ ...+-.++.
T Consensus 175 ~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~-----------------~i~~~llg~-- 235 (615)
T TIGR02903 175 PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPR-----------------EVTNPLLGS-- 235 (615)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHH-----------------HHhHHhcCC--
Confidence 4569999999999999999998743210 112345565543310000 001111110
Q ss_pred cCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH
Q 006571 257 RLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ 336 (640)
Q Consensus 257 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~ 336 (640)
.. +.....+.+.++..|+.+..+.. +..+||| +||||| +..||+..+..+.+
T Consensus 236 -----~~-~~~~~~a~~~l~~~gl~~~~~g~-----v~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~ 287 (615)
T TIGR02903 236 -----VH-DPIYQGARRDLAETGVPEPKTGL-----VTDAHGG----------------VLFIDE-IGELDPLLQNKLLK 287 (615)
T ss_pred -----cc-HHHHHHHHHHHHHcCCCchhcCc-----hhhcCCC----------------eEEEec-cccCCHHHHHHHHH
Confidence 11 11122344557777886655433 4578888 999999 79999999999999
Q ss_pred HHHH
Q 006571 337 MLQD 340 (640)
Q Consensus 337 ~L~~ 340 (640)
.|++
T Consensus 288 ~Le~ 291 (615)
T TIGR02903 288 VLED 291 (615)
T ss_pred HHhh
Confidence 8875
No 499
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.83 E-value=7.3e-05 Score=81.42 Aligned_cols=35 Identities=40% Similarity=0.694 Sum_probs=29.0
Q ss_pred eece-EEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 173 LNGI-TGSVNPGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 173 L~~v-s~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
|+.+ .+=+.+|+++.|.|++|+|||||+..++...
T Consensus 71 LD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~ 106 (372)
T cd01121 71 LDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARL 106 (372)
T ss_pred HHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4443 3468999999999999999999999998644
No 500
>PRK09183 transposase/IS protein; Provisional
Probab=97.80 E-value=6.5e-05 Score=77.94 Aligned_cols=34 Identities=35% Similarity=0.498 Sum_probs=30.9
Q ss_pred cceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 006571 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 171 ~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G 205 (640)
..|.++++ +++|+.+.|+||+|+|||+|..+|+.
T Consensus 91 ~~L~~~~~-i~~~~~v~l~Gp~GtGKThLa~al~~ 124 (259)
T PRK09183 91 QSLRSLSF-IERNENIVLLGPSGVGKTHLAIALGY 124 (259)
T ss_pred HHHhcCCc-hhcCCeEEEEeCCCCCHHHHHHHHHH
Confidence 45778888 99999999999999999999999975
Done!