Query 006571
Match_columns 640
No_of_seqs 544 out of 3382
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 03:08:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006571.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006571hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 100.0 3.7E-50 1.3E-54 429.6 28.8 222 148-384 23-252 (366)
2 3tif_A Uncharacterized ABC tra 100.0 4.9E-50 1.7E-54 406.4 27.2 222 149-383 1-232 (235)
3 2olj_A Amino acid ABC transpor 100.0 1E-49 3.4E-54 410.5 28.9 218 149-385 24-248 (263)
4 1b0u_A Histidine permease; ABC 100.0 8.3E-50 2.8E-54 411.1 28.2 217 149-384 6-241 (262)
5 3gfo_A Cobalt import ATP-bindi 100.0 9.1E-50 3.1E-54 413.2 28.5 218 149-385 7-233 (275)
6 3rlf_A Maltose/maltodextrin im 100.0 1.3E-49 4.6E-54 427.7 30.0 218 149-385 3-223 (381)
7 3fvq_A Fe(3+) IONS import ATP- 100.0 7.2E-50 2.5E-54 427.0 27.1 218 149-385 4-228 (359)
8 1vpl_A ABC transporter, ATP-bi 100.0 3.6E-49 1.2E-53 404.9 28.1 218 149-385 15-235 (256)
9 2pcj_A ABC transporter, lipopr 100.0 4.6E-49 1.6E-53 396.4 27.7 211 149-379 4-222 (224)
10 1g6h_A High-affinity branched- 100.0 3.2E-49 1.1E-53 405.5 25.6 218 149-382 7-239 (257)
11 2yyz_A Sugar ABC transporter, 100.0 1.2E-48 4E-53 418.4 28.2 218 149-385 3-223 (359)
12 2it1_A 362AA long hypothetical 100.0 1.4E-48 4.8E-53 418.3 28.7 218 149-385 3-223 (362)
13 1z47_A CYSA, putative ABC-tran 100.0 1.9E-48 6.6E-53 415.9 29.7 220 148-385 13-235 (355)
14 1ji0_A ABC transporter; ATP bi 100.0 7.4E-49 2.5E-53 398.9 25.2 216 149-384 6-227 (240)
15 1g29_1 MALK, maltose transport 100.0 2.4E-48 8.3E-53 418.3 30.3 218 149-385 3-229 (372)
16 1oxx_K GLCV, glucose, ABC tran 100.0 1.2E-48 4.2E-53 418.1 26.8 218 149-385 3-230 (353)
17 4g1u_C Hemin import ATP-bindin 100.0 1.7E-48 5.8E-53 402.1 26.1 215 149-384 11-236 (266)
18 1v43_A Sugar-binding transport 100.0 2.5E-48 8.4E-53 417.8 26.6 218 149-385 11-231 (372)
19 3nh6_A ATP-binding cassette SU 100.0 1.8E-48 6.1E-53 409.0 23.1 215 148-385 52-277 (306)
20 2yz2_A Putative ABC transporte 100.0 1.1E-47 3.6E-52 396.2 26.1 219 149-385 2-227 (266)
21 3d31_A Sulfate/molybdate ABC t 100.0 6.1E-48 2.1E-52 411.5 25.1 213 149-384 1-216 (348)
22 3qf4_A ABC transporter, ATP-bi 100.0 2E-50 6.8E-55 459.7 6.1 353 9-385 189-566 (587)
23 4a82_A Cystic fibrosis transme 100.0 4.6E-50 1.6E-54 456.1 8.8 351 9-385 187-564 (578)
24 2d2e_A SUFC protein; ABC-ATPas 100.0 1.1E-47 3.7E-52 392.7 24.3 220 149-382 3-230 (250)
25 2onk_A Molybdate/tungstate ABC 100.0 1.6E-47 5.3E-52 389.2 24.5 212 150-385 2-216 (240)
26 3b5x_A Lipid A export ATP-bind 100.0 3.2E-49 1.1E-53 449.6 13.3 350 9-385 191-567 (582)
27 3qf4_B Uncharacterized ABC tra 100.0 1.6E-49 5.5E-54 453.3 10.7 351 9-385 203-578 (598)
28 2ihy_A ABC transporter, ATP-bi 100.0 1.1E-47 3.9E-52 398.5 22.9 221 148-384 20-251 (279)
29 2zu0_C Probable ATP-dependent 100.0 5.5E-47 1.9E-51 391.1 27.7 230 148-392 19-260 (267)
30 4f4c_A Multidrug resistance pr 100.0 1.9E-49 6.3E-54 487.3 10.3 356 8-385 261-641 (1321)
31 3b60_A Lipid A export ATP-bind 100.0 2.1E-49 7.1E-54 451.1 8.5 350 9-385 191-567 (582)
32 2yl4_A ATP-binding cassette SU 100.0 9.9E-49 3.4E-53 446.6 13.4 355 9-385 188-570 (595)
33 2ff7_A Alpha-hemolysin translo 100.0 7.9E-47 2.7E-51 385.6 24.2 215 148-384 6-231 (247)
34 2ixe_A Antigen peptide transpo 100.0 3.4E-47 1.1E-51 393.5 21.7 223 148-385 15-245 (271)
35 4f4c_A Multidrug resistance pr 100.0 2.5E-49 8.6E-54 486.2 6.1 353 12-385 925-1304(1321)
36 2nq2_C Hypothetical ABC transp 100.0 3.8E-46 1.3E-50 381.9 26.9 210 149-384 4-216 (253)
37 1mv5_A LMRA, multidrug resista 100.0 1.1E-46 3.7E-51 383.6 19.0 215 150-385 2-226 (243)
38 2qi9_C Vitamin B12 import ATP- 100.0 6.9E-46 2.4E-50 379.0 24.4 207 149-384 4-221 (249)
39 2ghi_A Transport protein; mult 100.0 1.6E-45 5.6E-50 378.7 24.7 215 149-385 17-242 (260)
40 3g5u_A MCG1178, multidrug resi 100.0 5.3E-47 1.8E-51 464.5 14.7 356 8-385 233-613 (1284)
41 1sgw_A Putative ABC transporte 100.0 1E-45 3.5E-50 369.5 16.8 202 148-374 9-210 (214)
42 2pjz_A Hypothetical protein ST 100.0 9E-45 3.1E-49 373.6 22.7 210 149-384 1-214 (263)
43 2pze_A Cystic fibrosis transme 100.0 2.1E-44 7.1E-49 363.7 21.3 205 148-384 5-217 (229)
44 2cbz_A Multidrug resistance-as 100.0 3.4E-44 1.2E-48 363.9 22.5 211 149-385 3-217 (237)
45 3gd7_A Fusion complex of cysti 100.0 1E-44 3.5E-49 392.0 18.7 215 148-385 18-242 (390)
46 3g5u_A MCG1178, multidrug resi 100.0 4.3E-44 1.5E-48 438.8 16.4 355 10-385 878-1258(1284)
47 2bbs_A Cystic fibrosis transme 100.0 2.1E-41 7.3E-46 353.1 17.9 200 149-385 40-247 (290)
48 3bk7_A ABC transporter ATP-bin 100.0 5.8E-37 2E-41 349.1 22.2 205 148-385 356-563 (607)
49 1yqt_A RNAse L inhibitor; ATP- 100.0 4.9E-37 1.7E-41 345.8 20.1 205 148-385 286-493 (538)
50 3ozx_A RNAse L inhibitor; ATP 100.0 3.1E-36 1E-40 338.9 20.9 206 148-384 268-476 (538)
51 3ux8_A Excinuclease ABC, A sub 100.0 1.4E-35 4.9E-40 342.5 17.8 207 169-384 30-297 (670)
52 2iw3_A Elongation factor 3A; a 100.0 2E-34 6.8E-39 339.7 25.4 199 148-385 434-635 (986)
53 3j16_B RLI1P; ribosome recycli 100.0 7E-35 2.4E-39 331.6 17.9 202 153-385 350-559 (608)
54 1yqt_A RNAse L inhibitor; ATP- 100.0 3.4E-35 1.1E-39 330.8 12.1 194 150-372 21-234 (538)
55 3bk7_A ABC transporter ATP-bin 100.0 3E-35 1E-39 335.0 11.7 191 153-372 95-304 (607)
56 2iw3_A Elongation factor 3A; a 100.0 2.2E-34 7.5E-39 339.3 15.0 208 148-379 670-981 (986)
57 3ux8_A Excinuclease ABC, A sub 100.0 1.7E-33 5.7E-38 325.2 18.9 199 169-384 334-639 (670)
58 3pih_A Uvrabc system protein A 100.0 1.7E-30 5.9E-35 305.8 23.8 200 170-384 597-901 (916)
59 3j16_B RLI1P; ribosome recycli 100.0 7E-32 2.4E-36 306.9 11.3 188 170-376 91-301 (608)
60 3ozx_A RNAse L inhibitor; ATP 100.0 4.3E-32 1.5E-36 305.2 7.8 173 180-374 22-215 (538)
61 2r6f_A Excinuclease ABC subuni 100.0 6.1E-31 2.1E-35 307.9 16.9 208 148-384 628-941 (972)
62 2vf7_A UVRA2, excinuclease ABC 100.0 1.9E-30 6.4E-35 303.2 19.6 208 148-384 501-826 (842)
63 2ygr_A Uvrabc system protein A 100.0 2.3E-30 8E-35 304.0 17.0 208 149-385 647-960 (993)
64 4aby_A DNA repair protein RECN 100.0 5.9E-29 2E-33 270.5 19.2 203 171-378 49-381 (415)
65 2npi_A Protein CLP1; CLP1-PCF1 100.0 1.4E-31 4.8E-36 295.5 -7.9 197 149-384 118-337 (460)
66 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 1.3E-25 4.6E-30 241.2 18.8 84 291-376 275-364 (365)
67 3b85_A Phosphate starvation-in 99.9 6.6E-29 2.2E-33 246.9 -12.6 143 168-356 11-159 (208)
68 1e69_A Chromosome segregation 99.9 2.9E-25 1E-29 234.4 14.5 206 174-383 16-311 (322)
69 2v9p_A Replication protein E1; 99.9 1.3E-29 4.5E-34 265.3 -21.6 169 149-389 101-270 (305)
70 4gp7_A Metallophosphoesterase; 99.9 1.2E-25 4.1E-30 215.9 3.0 143 175-356 1-160 (171)
71 1tq4_A IIGP1, interferon-induc 99.9 1E-26 3.5E-31 252.9 -8.8 170 170-366 36-247 (413)
72 1ye8_A Protein THEP1, hypothet 99.9 2.2E-24 7.6E-29 209.0 3.5 145 185-376 2-159 (178)
73 1znw_A Guanylate kinase, GMP k 99.9 7.8E-27 2.7E-31 230.6 -17.6 183 168-371 7-203 (207)
74 2dpy_A FLII, flagellum-specifi 99.9 2.1E-25 7.3E-30 244.8 -10.2 191 148-383 130-342 (438)
75 3b9q_A Chloroplast SRP recepto 99.9 7.5E-24 2.6E-28 222.0 0.9 173 173-374 90-284 (302)
76 2vf7_A UVRA2, excinuclease ABC 99.9 2.4E-21 8.2E-26 226.5 16.4 108 269-384 358-474 (842)
77 2og2_A Putative signal recogni 99.8 4.2E-23 1.4E-27 220.7 -0.5 172 174-374 148-341 (359)
78 2o5v_A DNA replication and rep 99.8 4.4E-21 1.5E-25 205.3 14.9 86 290-383 259-354 (359)
79 3sop_A Neuronal-specific septi 99.8 2.2E-23 7.6E-28 215.0 -4.6 146 185-355 4-150 (270)
80 2pt7_A CAG-ALFA; ATPase, prote 99.8 1.1E-22 3.9E-27 215.6 0.1 131 172-374 160-292 (330)
81 1z6g_A Guanylate kinase; struc 99.8 2.4E-25 8.1E-30 222.4 -20.3 172 170-371 10-193 (218)
82 3qkt_A DNA double-strand break 99.8 9.7E-21 3.3E-25 201.3 13.9 78 291-370 244-327 (339)
83 3aez_A Pantothenate kinase; tr 99.8 9.5E-24 3.3E-28 222.1 -12.1 145 148-328 42-209 (312)
84 2jeo_A Uridine-cytidine kinase 99.8 3.8E-22 1.3E-26 202.2 -0.7 181 167-388 9-190 (245)
85 3pih_A Uvrabc system protein A 99.8 8.9E-21 3.1E-25 223.4 10.6 162 200-385 385-560 (916)
86 1cr0_A DNA primase/helicase; R 99.8 2.2E-21 7.5E-26 201.6 3.3 184 170-374 22-237 (296)
87 4ad8_A DNA repair protein RECN 99.8 4.1E-20 1.4E-24 207.2 12.7 78 292-372 393-473 (517)
88 2obl_A ESCN; ATPase, hydrolase 99.8 2.4E-21 8.3E-26 206.6 -0.3 191 149-383 45-253 (347)
89 2o8b_B DNA mismatch repair pro 99.8 1.1E-20 3.8E-25 225.9 2.7 173 149-382 750-939 (1022)
90 1tf7_A KAIC; homohexamer, hexa 99.8 3.8E-22 1.3E-26 224.2 -11.3 168 169-372 24-210 (525)
91 1tf7_A KAIC; homohexamer, hexa 99.8 2.5E-19 8.6E-24 201.2 10.7 156 177-373 275-444 (525)
92 2r6f_A Excinuclease ABC subuni 99.8 7.6E-19 2.6E-23 206.1 14.6 135 242-384 450-599 (972)
93 3thx_A DNA mismatch repair pro 99.8 3.9E-19 1.3E-23 210.3 10.4 160 169-383 648-811 (934)
94 2eyu_A Twitching motility prot 99.8 6.6E-20 2.2E-24 188.2 3.3 132 171-371 15-147 (261)
95 2ygr_A Uvrabc system protein A 99.8 1.1E-18 3.8E-23 205.4 13.1 137 241-385 466-617 (993)
96 2ehv_A Hypothetical protein PH 99.8 4.4E-20 1.5E-24 185.4 0.4 169 172-370 18-206 (251)
97 4a74_A DNA repair and recombin 99.8 7.2E-20 2.5E-24 181.5 1.3 153 178-373 20-201 (231)
98 1f2t_B RAD50 ABC-ATPase; DNA d 99.8 1.7E-18 5.9E-23 162.7 10.6 83 290-374 52-142 (148)
99 3asz_A Uridine kinase; cytidin 99.7 7.8E-21 2.7E-25 187.2 -11.9 146 180-356 3-162 (211)
100 2qnr_A Septin-2, protein NEDD5 99.7 1.4E-19 4.7E-24 189.5 -3.6 165 153-357 2-169 (301)
101 3thx_B DNA mismatch repair pro 99.7 2.4E-18 8.4E-23 203.0 6.1 155 169-376 659-816 (918)
102 3szr_A Interferon-induced GTP- 99.7 4E-20 1.4E-24 211.0 -9.2 194 149-387 10-239 (608)
103 1rj9_A FTSY, signal recognitio 99.7 7.1E-19 2.4E-23 184.3 0.0 148 182-356 101-259 (304)
104 1ewq_A DNA mismatch repair pro 99.7 1.9E-18 6.4E-23 201.0 3.3 161 149-377 550-716 (765)
105 1pzn_A RAD51, DNA repair and r 99.7 4.5E-19 1.5E-23 189.3 -2.9 167 171-380 118-310 (349)
106 2i3b_A HCR-ntpase, human cance 99.7 1.9E-19 6.5E-24 176.0 -5.7 156 183-378 1-169 (189)
107 1wb9_A DNA mismatch repair pro 99.7 3.9E-18 1.3E-22 199.5 2.5 157 169-379 594-752 (800)
108 3jvv_A Twitching mobility prot 99.7 7.9E-18 2.7E-22 180.0 3.8 128 179-372 119-246 (356)
109 2w0m_A SSO2452; RECA, SSPF, un 99.7 1.1E-17 3.8E-22 165.5 2.2 168 170-373 9-193 (235)
110 1pui_A ENGB, probable GTP-bind 99.7 1.1E-18 3.6E-23 170.7 -5.9 178 149-347 3-202 (210)
111 2qag_C Septin-7; cell cycle, c 99.6 3.2E-18 1.1E-22 186.6 -3.8 164 148-355 10-177 (418)
112 1nlf_A Regulatory protein REPA 99.6 4.6E-16 1.6E-20 160.3 10.5 151 179-356 26-182 (279)
113 1s96_A Guanylate kinase, GMP k 99.6 2.6E-17 8.9E-22 164.5 -2.3 149 177-388 10-163 (219)
114 2bdt_A BH3686; alpha-beta prot 99.6 1.2E-19 4E-24 175.8 -21.1 170 183-384 2-183 (189)
115 3kta_B Chromosome segregation 99.6 1.5E-14 5E-19 139.4 13.8 90 293-385 62-158 (173)
116 2cvh_A DNA repair and recombin 99.6 1.1E-15 3.9E-20 150.2 5.5 155 170-372 6-185 (220)
117 2qag_B Septin-6, protein NEDD5 99.5 1.3E-16 4.4E-21 173.6 -4.9 174 169-354 27-218 (427)
118 2ewv_A Twitching motility prot 99.5 1.2E-15 4.1E-20 164.2 1.8 131 171-370 126-257 (372)
119 1zp6_A Hypothetical protein AT 99.5 7.4E-16 2.5E-20 148.7 -1.3 153 179-353 5-159 (191)
120 2gza_A Type IV secretion syste 99.5 6.8E-16 2.3E-20 165.4 -2.1 152 151-373 137-303 (361)
121 1lw7_A Transcriptional regulat 99.5 5.7E-18 1.9E-22 181.6 -18.9 162 172-370 157-342 (365)
122 2bbw_A Adenylate kinase 4, AK4 99.5 3.6E-17 1.2E-21 165.3 -13.8 153 182-345 26-200 (246)
123 1nij_A Hypothetical protein YJ 99.5 1.4E-17 4.9E-22 175.4 -18.4 156 184-357 5-191 (318)
124 2yhs_A FTSY, cell division pro 99.4 5.8E-15 2E-19 162.8 -1.1 153 173-354 283-448 (503)
125 3auy_A DNA double-strand break 99.4 3.1E-13 1.1E-17 145.1 12.2 78 291-371 276-360 (371)
126 1n0w_A DNA repair protein RAD5 99.4 1.3E-13 4.5E-18 137.5 8.7 158 172-372 12-209 (243)
127 2f1r_A Molybdopterin-guanine d 99.4 7.8E-16 2.7E-20 148.0 -8.4 136 184-345 3-163 (171)
128 2rcn_A Probable GTPase ENGC; Y 99.4 3.6E-14 1.2E-18 151.4 2.9 124 171-310 204-328 (358)
129 2qm8_A GTPase/ATPase; G protei 99.4 8.2E-17 2.8E-21 171.0 -17.4 173 150-343 30-260 (337)
130 3e70_C DPA, signal recognition 99.4 2.4E-14 8.2E-19 151.4 1.2 143 180-355 126-279 (328)
131 1htw_A HI0065; nucleotide-bind 99.4 7.4E-15 2.5E-19 139.4 -2.4 79 168-252 18-97 (158)
132 1odf_A YGR205W, hypothetical 3 99.4 2.7E-14 9.3E-19 148.5 -1.7 126 181-330 29-169 (290)
133 1w1w_A Structural maintenance 99.3 1.4E-12 4.9E-17 142.6 10.1 75 294-370 332-410 (430)
134 3ec2_A DNA replication protein 99.3 3.8E-13 1.3E-17 128.9 4.6 49 310-358 97-146 (180)
135 2kjq_A DNAA-related protein; s 99.3 7.4E-13 2.5E-17 124.2 5.9 98 171-357 29-127 (149)
136 1udx_A The GTP-binding protein 99.3 4.8E-14 1.6E-18 153.6 -3.8 168 173-364 147-317 (416)
137 1p9r_A General secretion pathw 99.3 1E-15 3.4E-20 167.0 -17.1 137 169-319 155-315 (418)
138 1sxj_E Activator 1 40 kDa subu 99.3 2.2E-12 7.4E-17 136.4 6.3 136 186-357 39-176 (354)
139 2yv5_A YJEQ protein; hydrolase 99.3 2.4E-13 8.3E-18 142.1 -1.6 121 180-309 162-301 (302)
140 3lda_A DNA repair protein RAD5 99.3 1.4E-11 4.8E-16 133.5 11.6 62 312-373 272-364 (400)
141 3c8u_A Fructokinase; YP_612366 99.2 4.6E-14 1.6E-18 139.0 -8.3 165 180-388 19-184 (208)
142 1lvg_A Guanylate kinase, GMP k 99.2 1.3E-15 4.6E-20 149.3 -20.4 152 181-371 2-173 (198)
143 2oap_1 GSPE-2, type II secreti 99.2 1.6E-14 5.5E-19 161.3 -14.8 176 170-363 247-457 (511)
144 1ni3_A YCHF GTPase, YCHF GTP-b 99.1 9.9E-14 3.4E-18 149.8 -14.3 169 179-381 16-209 (392)
145 2x8a_A Nuclear valosin-contain 99.1 2.9E-14 9.9E-19 147.0 -19.3 142 169-338 32-190 (274)
146 1in4_A RUVB, holliday junction 99.1 5.3E-13 1.8E-17 141.2 -10.6 151 169-343 30-194 (334)
147 1t9h_A YLOQ, probable GTPase E 99.0 1.9E-11 6.4E-16 127.9 -1.3 118 178-303 168-303 (307)
148 2dr3_A UPF0273 protein PH0284; 99.0 1.8E-11 6.1E-16 122.1 -1.5 60 312-371 127-196 (247)
149 1u0l_A Probable GTPase ENGC; p 99.0 6.5E-11 2.2E-15 123.5 2.6 107 178-298 164-294 (301)
150 1vma_A Cell division protein F 99.0 2.7E-10 9.2E-15 119.2 5.1 113 176-342 97-212 (306)
151 1sq5_A Pantothenate kinase; P- 99.0 3.2E-11 1.1E-15 126.3 -2.0 98 149-257 37-156 (308)
152 2r6a_A DNAB helicase, replicat 98.9 2.5E-09 8.6E-14 117.7 11.1 180 170-374 190-401 (454)
153 1ls1_A Signal recognition part 98.9 3E-09 1E-13 110.7 9.9 118 174-341 91-209 (295)
154 2zr9_A Protein RECA, recombina 98.9 2.3E-09 7.9E-14 114.2 8.5 154 172-379 48-237 (349)
155 2ius_A DNA translocase FTSK; n 98.9 7.9E-11 2.7E-15 131.0 -4.0 165 175-356 159-343 (512)
156 1iy2_A ATP-dependent metallopr 98.9 1.1E-12 3.7E-17 134.8 -18.0 124 169-316 61-190 (278)
157 2px0_A Flagellar biosynthesis 98.8 2.7E-09 9.2E-14 111.1 6.6 141 181-377 103-247 (296)
158 1oix_A RAS-related protein RAB 98.8 4.9E-10 1.7E-14 108.1 0.7 140 185-341 31-189 (191)
159 3euj_A Chromosome partition pr 98.8 1.2E-09 4E-14 120.8 3.6 52 170-224 17-68 (483)
160 1ixz_A ATP-dependent metallopr 98.8 2.1E-12 7.1E-17 130.6 -17.1 124 169-316 37-166 (254)
161 3tr0_A Guanylate kinase, GMP k 98.8 1.8E-10 6.2E-15 111.9 -2.8 68 177-250 1-72 (205)
162 3k1j_A LON protease, ATP-depen 98.8 8.1E-11 2.8E-15 134.2 -7.0 161 168-340 45-227 (604)
163 1qhl_A Protein (cell division 98.6 1E-09 3.6E-14 109.9 -4.0 72 148-237 8-91 (227)
164 3lnc_A Guanylate kinase, GMP k 98.6 7.8E-10 2.7E-14 110.2 -5.5 38 170-207 14-52 (231)
165 2ce7_A Cell division protein F 98.6 5.7E-08 1.9E-12 107.4 7.2 59 298-356 93-165 (476)
166 3hr8_A Protein RECA; alpha and 98.5 4.5E-08 1.5E-12 104.3 5.3 78 171-250 47-128 (356)
167 2f9l_A RAB11B, member RAS onco 98.5 3.3E-08 1.1E-12 95.6 3.6 37 304-342 130-166 (199)
168 4eun_A Thermoresistant glucoki 98.5 4.9E-09 1.7E-13 102.1 -3.5 67 177-249 23-92 (200)
169 2qtf_A Protein HFLX, GTP-bindi 98.5 1.7E-08 5.9E-13 108.0 0.2 151 182-343 177-353 (364)
170 1svm_A Large T antigen; AAA+ f 98.5 3E-10 1E-14 122.1 -14.4 144 170-324 156-312 (377)
171 3uie_A Adenylyl-sulfate kinase 98.4 5.4E-09 1.9E-13 101.8 -5.6 56 169-227 11-68 (200)
172 3nwj_A ATSK2; P loop, shikimat 98.3 3.4E-08 1.1E-12 100.4 -1.7 52 149-207 17-72 (250)
173 3kta_A Chromosome segregation 98.3 4.6E-07 1.6E-11 86.3 4.8 37 171-208 13-51 (182)
174 4a1f_A DNAB helicase, replicat 98.3 4.3E-07 1.5E-11 96.1 4.8 130 170-353 33-164 (338)
175 2j41_A Guanylate kinase; GMP, 98.3 2.3E-07 7.8E-12 89.8 2.1 30 178-207 1-30 (207)
176 1zu4_A FTSY; GTPase, signal re 98.2 1.8E-07 6.3E-12 98.3 0.9 78 172-251 94-185 (320)
177 2xau_A PRE-mRNA-splicing facto 98.2 1E-06 3.6E-11 103.0 7.4 72 293-365 188-261 (773)
178 4e22_A Cytidylate kinase; P-lo 98.2 8.5E-08 2.9E-12 97.1 -1.8 63 171-238 18-96 (252)
179 3vaa_A Shikimate kinase, SK; s 98.2 5.5E-07 1.9E-11 87.4 3.5 43 165-207 7-49 (199)
180 2dhr_A FTSH; AAA+ protein, hex 98.2 5.4E-09 1.9E-13 116.2 -12.4 129 170-324 53-187 (499)
181 1jjv_A Dephospho-COA kinase; P 98.2 3.3E-07 1.1E-11 89.2 1.0 127 185-370 4-131 (206)
182 3t34_A Dynamin-related protein 98.2 7E-06 2.4E-10 87.2 11.1 159 170-353 24-212 (360)
183 2e87_A Hypothetical protein PH 98.1 2E-06 6.8E-11 91.5 6.6 62 294-357 230-294 (357)
184 2z4s_A Chromosomal replication 98.1 2.1E-06 7E-11 94.1 5.4 96 312-409 193-296 (440)
185 1kgd_A CASK, peripheral plasma 98.0 9.4E-07 3.2E-11 84.5 1.5 38 181-219 3-40 (180)
186 1v5w_A DMC1, meiotic recombina 98.0 3.1E-05 1.1E-09 81.9 12.6 145 173-355 111-274 (343)
187 3a00_A Guanylate kinase, GMP k 98.0 1.2E-06 4.1E-11 84.1 1.5 25 183-207 1-25 (186)
188 1fnn_A CDC6P, cell division co 98.0 1.4E-05 4.7E-10 84.5 9.8 43 312-355 124-169 (389)
189 2dy1_A Elongation factor G; tr 98.0 2.1E-06 7.1E-11 98.9 3.7 131 177-356 3-137 (665)
190 2z43_A DNA repair and recombin 97.9 3.3E-05 1.1E-09 80.9 11.1 145 172-354 95-257 (324)
191 2vp4_A Deoxynucleoside kinase; 97.9 3E-06 1E-10 84.2 2.3 41 177-223 14-54 (230)
192 3bh0_A DNAB-like replicative h 97.9 1.3E-05 4.5E-10 83.8 6.5 133 170-354 55-190 (315)
193 3b9p_A CG5977-PA, isoform A; A 97.8 7.1E-05 2.4E-09 76.6 11.2 73 297-369 97-186 (297)
194 1ega_A Protein (GTP-binding pr 97.8 1.2E-05 4E-10 83.6 5.2 63 296-366 101-169 (301)
195 3tau_A Guanylate kinase, GMP k 97.8 6E-06 2.1E-10 80.8 2.7 27 181-207 6-32 (208)
196 2qt1_A Nicotinamide riboside k 97.8 1.5E-05 5.1E-10 77.4 4.3 46 177-243 15-60 (207)
197 1knq_A Gluconate kinase; ALFA/ 97.7 8.1E-06 2.8E-10 77.0 2.1 37 181-223 6-42 (175)
198 3kl4_A SRP54, signal recogniti 97.7 6.9E-05 2.4E-09 81.7 8.5 125 182-354 96-223 (433)
199 3ney_A 55 kDa erythrocyte memb 97.7 1.5E-05 5.3E-10 77.8 2.9 29 179-207 15-43 (197)
200 3tqc_A Pantothenate kinase; bi 97.6 4E-06 1.4E-10 88.1 -2.2 59 169-242 72-136 (321)
201 1rz3_A Hypothetical protein rb 97.6 1E-05 3.4E-10 78.7 0.8 41 180-222 19-59 (201)
202 1cke_A CK, MSSA, protein (cyti 97.5 4.2E-06 1.4E-10 82.2 -3.1 56 183-238 5-74 (227)
203 3cr8_A Sulfate adenylyltranfer 97.5 7.9E-06 2.7E-10 91.9 -1.3 43 179-223 365-409 (552)
204 2q6t_A DNAB replication FORK h 97.5 0.00022 7.4E-09 78.0 9.9 171 171-371 188-397 (444)
205 2pez_A Bifunctional 3'-phospho 97.5 1.1E-05 3.8E-10 76.5 -1.0 41 181-224 3-45 (179)
206 3cf0_A Transitional endoplasmi 97.5 0.00013 4.6E-09 75.3 7.0 30 178-207 44-73 (301)
207 3llm_A ATP-dependent RNA helic 97.5 2.5E-05 8.4E-10 77.7 1.2 153 180-364 73-228 (235)
208 2qby_A CDC6 homolog 1, cell di 97.5 3.5E-05 1.2E-09 81.0 2.4 27 181-207 43-69 (386)
209 1f2t_A RAD50 ABC-ATPase; DNA d 97.5 6.4E-05 2.2E-09 69.8 3.9 31 174-205 15-45 (149)
210 1kag_A SKI, shikimate kinase I 97.4 4.4E-05 1.5E-09 71.5 2.5 26 182-207 3-28 (173)
211 3ice_A Transcription terminati 97.4 1.3E-05 4.4E-10 85.7 -1.4 51 149-206 133-197 (422)
212 2wjg_A FEOB, ferrous iron tran 97.3 0.00011 3.7E-09 69.3 3.9 22 185-206 9-30 (188)
213 1ypw_A Transitional endoplasmi 97.3 0.00017 5.7E-09 84.8 5.7 30 178-207 233-262 (806)
214 3lxx_A GTPase IMAP family memb 97.3 0.0012 4E-08 65.4 10.9 23 185-207 31-53 (239)
215 2p67_A LAO/AO transport system 97.3 2.3E-05 7.9E-10 82.8 -2.0 52 169-222 42-93 (341)
216 1mky_A Probable GTP-binding pr 97.2 0.00026 8.9E-09 77.2 6.0 69 184-252 181-263 (439)
217 1u94_A RECA protein, recombina 97.2 0.00083 2.8E-08 71.4 9.4 35 171-205 49-85 (356)
218 1w1w_A Structural maintenance 97.2 0.00015 5.2E-09 78.8 3.6 30 178-207 21-50 (430)
219 4eaq_A DTMP kinase, thymidylat 97.2 0.00011 3.8E-09 73.1 2.2 37 172-208 12-51 (229)
220 3bos_A Putative DNA replicatio 97.2 0.00025 8.5E-09 69.3 4.4 45 312-356 103-149 (242)
221 1l8q_A Chromosomal replication 97.2 0.001 3.5E-08 69.0 9.3 45 311-355 96-141 (324)
222 3m6a_A ATP-dependent protease 97.1 7.1E-05 2.4E-09 84.1 -0.1 50 170-222 96-145 (543)
223 2gj8_A MNME, tRNA modification 97.1 0.00058 2E-08 64.0 5.8 27 181-207 2-28 (172)
224 3qks_A DNA double-strand break 97.1 0.00031 1.1E-08 68.5 3.9 30 175-205 16-45 (203)
225 2w58_A DNAI, primosome compone 97.0 0.00067 2.3E-08 65.1 6.2 24 184-207 55-78 (202)
226 2www_A Methylmalonic aciduria 97.0 0.00015 5E-09 77.0 1.5 41 181-223 72-112 (349)
227 3h4m_A Proteasome-activating n 97.0 0.00069 2.3E-08 68.7 6.4 28 180-207 48-75 (285)
228 2i1q_A DNA repair and recombin 97.0 0.0029 9.8E-08 65.8 11.1 34 172-205 86-120 (322)
229 3bgw_A DNAB-like replicative h 97.0 0.00075 2.5E-08 73.9 6.6 35 171-205 185-219 (444)
230 1m2o_B GTP-binding protein SAR 97.0 0.00062 2.1E-08 64.8 5.1 35 171-206 12-46 (190)
231 2qor_A Guanylate kinase; phosp 96.9 0.00044 1.5E-08 66.9 3.1 28 180-207 9-36 (204)
232 1y63_A LMAJ004144AAA protein; 96.8 0.00048 1.6E-08 65.6 3.0 32 175-206 2-33 (184)
233 2b8t_A Thymidine kinase; deoxy 96.8 0.0027 9.2E-08 63.0 8.4 53 313-370 89-150 (223)
234 1f6b_A SAR1; gtpases, N-termin 96.8 0.00028 9.7E-09 67.8 1.2 37 169-206 12-48 (198)
235 3d8b_A Fidgetin-like protein 1 96.8 0.0058 2E-07 64.6 11.3 26 181-206 115-140 (357)
236 2qz4_A Paraplegin; AAA+, SPG7, 96.8 0.004 1.4E-07 61.9 9.4 26 181-206 37-62 (262)
237 1m7g_A Adenylylsulfate kinase; 96.8 0.00035 1.2E-08 68.0 1.4 43 178-222 20-64 (211)
238 2qag_A Septin-2, protein NEDD5 96.7 0.00013 4.3E-09 77.8 -2.2 46 147-206 15-60 (361)
239 3auy_A DNA double-strand break 96.7 0.0016 5.3E-08 69.4 5.9 32 172-204 15-46 (371)
240 2ffh_A Protein (FFH); SRP54, s 96.7 0.00042 1.4E-08 75.4 1.5 47 174-224 91-137 (425)
241 2if2_A Dephospho-COA kinase; a 96.6 0.00079 2.7E-08 64.8 3.0 21 185-205 3-23 (204)
242 2p5t_B PEZT; postsegregational 96.5 0.00067 2.3E-08 68.2 1.4 47 172-223 22-68 (253)
243 2v1u_A Cell division control p 96.5 0.0019 6.6E-08 67.7 5.0 27 181-207 42-68 (387)
244 2ga8_A Hypothetical 39.9 kDa p 96.5 0.00033 1.1E-08 74.3 -1.1 37 171-207 10-48 (359)
245 3lxw_A GTPase IMAP family memb 96.5 0.0054 1.8E-07 61.4 7.9 56 298-354 87-148 (247)
246 2wji_A Ferrous iron transport 96.5 0.0015 5.1E-08 60.5 3.4 22 185-206 5-26 (165)
247 2yvu_A Probable adenylyl-sulfa 96.4 0.0016 5.4E-08 61.8 3.6 28 180-207 10-37 (186)
248 3cm0_A Adenylate kinase; ATP-b 96.4 0.0016 5.3E-08 61.5 3.5 25 181-205 2-26 (186)
249 1j8m_F SRP54, signal recogniti 96.4 0.00034 1.2E-08 72.6 -1.3 47 174-223 89-136 (297)
250 3t61_A Gluconokinase; PSI-biol 96.3 0.0015 5.2E-08 62.8 2.9 24 183-206 18-41 (202)
251 1sxj_C Activator 1 40 kDa subu 96.3 0.00041 1.4E-08 72.6 -1.3 39 169-207 30-70 (340)
252 3kb2_A SPBC2 prophage-derived 96.2 0.0023 7.7E-08 59.3 3.3 22 185-206 3-24 (173)
253 1qhx_A CPT, protein (chloramph 96.2 0.0025 8.6E-08 59.6 3.7 25 183-207 3-27 (178)
254 1q57_A DNA primase/helicase; d 96.2 0.038 1.3E-06 61.0 13.6 35 171-205 230-264 (503)
255 3cmw_A Protein RECA, recombina 96.2 0.015 5.1E-07 72.8 11.1 28 179-206 728-755 (1706)
256 1lv7_A FTSH; alpha/beta domain 96.1 0.0018 6.3E-08 64.6 2.4 34 172-207 36-69 (257)
257 2r8r_A Sensor protein; KDPD, P 96.1 0.0031 1E-07 62.7 3.9 75 308-389 79-175 (228)
258 2zej_A Dardarin, leucine-rich 96.1 0.0027 9.1E-08 59.9 3.3 22 185-206 4-25 (184)
259 1q3t_A Cytidylate kinase; nucl 96.1 0.0027 9.2E-08 62.9 3.5 28 179-206 12-39 (236)
260 1xwi_A SKD1 protein; VPS4B, AA 96.1 0.046 1.6E-06 56.8 13.0 28 180-207 42-69 (322)
261 1np6_A Molybdopterin-guanine d 96.1 0.0028 9.5E-08 60.4 3.3 38 184-221 7-45 (174)
262 1kht_A Adenylate kinase; phosp 96.1 0.0032 1.1E-07 59.3 3.6 25 182-206 2-26 (192)
263 2ohf_A Protein OLA1, GTP-bindi 96.1 0.0022 7.6E-08 69.0 2.7 44 178-221 17-69 (396)
264 2rhm_A Putative kinase; P-loop 96.0 0.0032 1.1E-07 59.5 3.1 25 181-205 3-27 (193)
265 3r20_A Cytidylate kinase; stru 96.0 0.0036 1.2E-07 62.6 3.4 24 183-206 9-32 (233)
266 2vhj_A Ntpase P4, P4; non- hyd 96.0 0.011 3.6E-07 61.9 7.1 28 178-205 118-145 (331)
267 1xp8_A RECA protein, recombina 95.9 0.072 2.5E-06 56.6 13.6 27 179-205 70-96 (366)
268 3lw7_A Adenylate kinase relate 95.9 0.004 1.4E-07 57.3 3.3 19 185-203 3-21 (179)
269 2v54_A DTMP kinase, thymidylat 95.8 0.0051 1.7E-07 58.7 3.7 26 182-207 3-28 (204)
270 1ex7_A Guanylate kinase; subst 95.8 0.0044 1.5E-07 59.7 3.2 22 185-206 3-24 (186)
271 3trf_A Shikimate kinase, SK; a 95.8 0.005 1.7E-07 58.0 3.5 25 182-206 4-28 (185)
272 2jaq_A Deoxyguanosine kinase; 95.8 0.0049 1.7E-07 58.7 3.4 23 185-207 2-24 (205)
273 1gvn_B Zeta; postsegregational 95.8 0.0049 1.7E-07 63.3 3.7 36 181-220 31-66 (287)
274 2ze6_A Isopentenyl transferase 95.8 0.0047 1.6E-07 62.1 3.5 24 184-207 2-25 (253)
275 1xx6_A Thymidine kinase; NESG, 95.8 0.019 6.4E-07 55.5 7.5 53 313-370 81-142 (191)
276 2plr_A DTMP kinase, probable t 95.7 0.0057 2E-07 58.5 3.8 26 182-207 3-28 (213)
277 1vht_A Dephospho-COA kinase; s 95.7 0.0059 2E-07 59.3 3.8 24 182-205 3-26 (218)
278 3ihw_A Centg3; RAS, centaurin, 95.7 0.01 3.5E-07 56.0 5.2 22 185-206 22-43 (184)
279 3iij_A Coilin-interacting nucl 95.7 0.0051 1.7E-07 57.8 3.0 25 181-205 9-33 (180)
280 3vfd_A Spastin; ATPase, microt 95.7 0.047 1.6E-06 58.1 11.0 26 181-206 146-171 (389)
281 1ly1_A Polynucleotide kinase; 95.6 0.0064 2.2E-07 56.6 3.6 22 184-205 3-24 (181)
282 1gtv_A TMK, thymidylate kinase 95.6 0.0029 1E-07 60.9 1.1 23 185-207 2-24 (214)
283 2wwf_A Thymidilate kinase, put 95.6 0.0062 2.1E-07 58.5 3.4 26 181-206 8-33 (212)
284 2c95_A Adenylate kinase 1; tra 95.6 0.0061 2.1E-07 57.7 3.2 25 181-205 7-31 (196)
285 1nn5_A Similar to deoxythymidy 95.5 0.007 2.4E-07 58.2 3.3 26 181-206 7-32 (215)
286 1via_A Shikimate kinase; struc 95.5 0.0071 2.4E-07 56.6 3.2 22 185-206 6-27 (175)
287 3k53_A Ferrous iron transport 95.4 0.0066 2.2E-07 61.4 3.1 23 185-207 5-27 (271)
288 1uf9_A TT1252 protein; P-loop, 95.4 0.008 2.8E-07 57.2 3.5 22 184-205 9-30 (203)
289 1tev_A UMP-CMP kinase; ploop, 95.4 0.0088 3E-07 56.3 3.7 24 182-205 2-25 (196)
290 1nks_A Adenylate kinase; therm 95.4 0.0074 2.5E-07 56.7 3.2 23 185-207 3-25 (194)
291 1xjc_A MOBB protein homolog; s 95.2 0.0098 3.3E-07 56.4 3.3 24 184-207 5-28 (169)
292 2ged_A SR-beta, signal recogni 95.2 0.0097 3.3E-07 55.9 3.3 24 184-207 49-72 (193)
293 1aky_A Adenylate kinase; ATP:A 95.2 0.011 3.7E-07 57.6 3.7 26 181-206 2-27 (220)
294 2bwj_A Adenylate kinase 5; pho 95.2 0.0079 2.7E-07 57.1 2.6 26 181-206 10-35 (199)
295 1z2a_A RAS-related protein RAB 95.1 0.0099 3.4E-07 54.1 3.0 23 185-207 7-29 (168)
296 2nzj_A GTP-binding protein REM 95.1 0.011 3.7E-07 54.3 3.3 23 185-207 6-28 (175)
297 3cmu_A Protein RECA, recombina 95.1 0.047 1.6E-06 69.3 9.8 153 171-377 369-557 (2050)
298 2erx_A GTP-binding protein DI- 95.1 0.011 3.8E-07 53.8 3.3 22 185-206 5-26 (172)
299 3co5_A Putative two-component 95.1 0.032 1.1E-06 50.7 6.3 42 313-355 75-116 (143)
300 2vli_A Antibiotic resistance p 95.1 0.008 2.7E-07 56.3 2.3 26 182-207 4-29 (183)
301 2z0h_A DTMP kinase, thymidylat 95.1 0.012 4E-07 55.8 3.4 23 185-207 2-24 (197)
302 3q72_A GTP-binding protein RAD 95.0 0.0092 3.1E-07 54.4 2.5 23 185-207 4-26 (166)
303 1kao_A RAP2A; GTP-binding prot 95.0 0.011 3.8E-07 53.5 3.1 23 185-207 5-27 (167)
304 1ko7_A HPR kinase/phosphatase; 95.0 0.017 5.7E-07 60.2 4.7 36 170-206 132-167 (314)
305 2dyk_A GTP-binding protein; GT 95.0 0.012 3.9E-07 53.3 3.1 23 185-207 3-25 (161)
306 1u8z_A RAS-related protein RAL 95.0 0.011 3.9E-07 53.4 3.0 23 185-207 6-28 (168)
307 2ce2_X GTPase HRAS; signaling 95.0 0.011 3.6E-07 53.4 2.7 23 185-207 5-27 (166)
308 3b1v_A Ferrous iron uptake tra 95.0 0.013 4.3E-07 59.8 3.5 22 185-206 5-26 (272)
309 3q85_A GTP-binding protein REM 95.0 0.013 4.3E-07 53.6 3.2 22 185-206 4-25 (169)
310 1z0j_A RAB-22, RAS-related pro 94.9 0.012 4.2E-07 53.5 3.1 23 185-207 8-30 (170)
311 1zd8_A GTP:AMP phosphotransfer 94.9 0.012 4.3E-07 57.5 3.3 26 181-206 5-30 (227)
312 1z08_A RAS-related protein RAB 94.9 0.013 4.3E-07 53.5 3.1 22 185-206 8-29 (170)
313 3tw8_B RAS-related protein RAB 94.9 0.012 4E-07 54.2 2.9 23 185-207 11-33 (181)
314 3ake_A Cytidylate kinase; CMP 94.9 0.013 4.5E-07 55.9 3.2 22 185-206 4-25 (208)
315 1ek0_A Protein (GTP-binding pr 94.9 0.013 4.4E-07 53.3 3.0 23 185-207 5-27 (170)
316 2cdn_A Adenylate kinase; phosp 94.9 0.015 5.3E-07 55.5 3.7 24 183-206 20-43 (201)
317 1c1y_A RAS-related protein RAP 94.9 0.013 4.5E-07 53.2 3.0 22 185-206 5-26 (167)
318 1g16_A RAS-related protein SEC 94.9 0.012 4E-07 53.6 2.7 23 185-207 5-27 (170)
319 1wms_A RAB-9, RAB9, RAS-relate 94.9 0.013 4.5E-07 53.9 3.1 23 185-207 9-31 (177)
320 1ky3_A GTP-binding protein YPT 94.8 0.013 4.5E-07 54.0 3.1 23 185-207 10-32 (182)
321 2lkc_A Translation initiation 94.8 0.017 5.6E-07 53.3 3.7 25 182-206 7-31 (178)
322 3cmw_A Protein RECA, recombina 94.8 0.24 8.2E-06 62.2 14.9 154 171-378 369-558 (1706)
323 1jal_A YCHF protein; nucleotid 94.8 0.023 7.8E-07 60.4 5.1 38 183-220 2-48 (363)
324 1fzq_A ADP-ribosylation factor 94.8 0.012 3.9E-07 55.3 2.5 23 184-206 17-39 (181)
325 3fb4_A Adenylate kinase; psych 94.8 0.015 5.1E-07 56.2 3.4 21 185-205 2-22 (216)
326 1svi_A GTP-binding protein YSX 94.8 0.012 4.2E-07 55.2 2.7 23 184-206 24-46 (195)
327 3dm5_A SRP54, signal recogniti 94.8 0.22 7.4E-06 54.2 12.8 26 182-207 99-124 (443)
328 4ag6_A VIRB4 ATPase, type IV s 94.8 0.0092 3.2E-07 63.6 2.0 45 313-357 262-309 (392)
329 2pbr_A DTMP kinase, thymidylat 94.8 0.016 5.4E-07 54.6 3.4 22 185-206 2-23 (195)
330 2fn4_A P23, RAS-related protei 94.7 0.014 4.6E-07 53.8 2.8 22 185-206 11-32 (181)
331 1ukz_A Uridylate kinase; trans 94.7 0.017 5.9E-07 55.2 3.6 23 183-205 15-37 (203)
332 1zak_A Adenylate kinase; ATP:A 94.7 0.013 4.5E-07 57.0 2.8 25 182-206 4-28 (222)
333 1r2q_A RAS-related protein RAB 94.7 0.015 5.2E-07 52.8 3.0 22 185-206 8-29 (170)
334 3pqc_A Probable GTP-binding pr 94.7 0.015 5E-07 54.4 2.9 23 185-207 25-47 (195)
335 3clv_A RAB5 protein, putative; 94.7 0.015 5.3E-07 54.3 3.1 23 185-207 9-31 (208)
336 4dsu_A GTPase KRAS, isoform 2B 94.7 0.016 5.3E-07 53.9 3.1 23 185-207 6-28 (189)
337 1e6c_A Shikimate kinase; phosp 94.7 0.015 5.1E-07 53.9 2.9 23 184-206 3-25 (173)
338 3t1o_A Gliding protein MGLA; G 94.6 0.017 5.7E-07 54.1 3.2 24 185-208 16-39 (198)
339 1zuh_A Shikimate kinase; alpha 94.6 0.019 6.3E-07 53.2 3.5 23 184-206 8-30 (168)
340 1qf9_A UMP/CMP kinase, protein 94.6 0.018 6.1E-07 54.0 3.4 23 183-205 6-28 (194)
341 2hxs_A RAB-26, RAS-related pro 94.6 0.018 6E-07 53.1 3.3 22 185-206 8-29 (178)
342 2cxx_A Probable GTP-binding pr 94.6 0.014 5E-07 54.3 2.7 22 185-206 3-24 (190)
343 3a4m_A L-seryl-tRNA(SEC) kinas 94.6 0.02 6.7E-07 57.6 3.8 25 182-206 3-27 (260)
344 3dl0_A Adenylate kinase; phosp 94.6 0.018 6.1E-07 55.7 3.4 22 185-206 2-23 (216)
345 3bc1_A RAS-related protein RAB 94.6 0.016 5.5E-07 53.9 3.0 23 185-207 13-35 (195)
346 2pt5_A Shikimate kinase, SK; a 94.6 0.019 6.5E-07 52.9 3.5 21 185-205 2-22 (168)
347 1upt_A ARL1, ADP-ribosylation 94.6 0.017 5.7E-07 52.8 3.0 23 184-206 8-30 (171)
348 2orv_A Thymidine kinase; TP4A 94.6 0.13 4.4E-06 51.1 9.6 53 312-370 89-150 (234)
349 2oil_A CATX-8, RAS-related pro 94.6 0.017 5.7E-07 54.4 3.0 23 185-207 27-49 (193)
350 1r8s_A ADP-ribosylation factor 94.5 0.018 6E-07 52.3 3.0 21 186-206 3-23 (164)
351 2iyv_A Shikimate kinase, SK; t 94.5 0.016 5.5E-07 54.4 2.7 23 184-206 3-25 (184)
352 3tlx_A Adenylate kinase 2; str 94.4 0.022 7.5E-07 56.7 3.8 24 182-205 28-51 (243)
353 2y8e_A RAB-protein 6, GH09086P 94.4 0.017 5.8E-07 53.1 2.7 22 185-206 16-37 (179)
354 2g6b_A RAS-related protein RAB 94.4 0.019 6.4E-07 53.0 3.0 23 185-207 12-34 (180)
355 2a9k_A RAS-related protein RAL 94.4 0.019 6.5E-07 53.1 3.0 23 185-207 20-42 (187)
356 1moz_A ARL1, ADP-ribosylation 94.4 0.012 4E-07 54.7 1.5 24 182-205 17-40 (183)
357 1z0f_A RAB14, member RAS oncog 94.4 0.019 6.6E-07 52.7 3.0 23 185-207 17-39 (179)
358 1wf3_A GTP-binding protein; GT 94.4 0.02 7E-07 59.0 3.4 25 181-206 6-30 (301)
359 2efe_B Small GTP-binding prote 94.3 0.02 7E-07 52.8 3.1 23 185-207 14-36 (181)
360 3con_A GTPase NRAS; structural 94.3 0.02 6.8E-07 53.6 3.0 23 185-207 23-45 (190)
361 3iby_A Ferrous iron transport 94.3 0.02 7E-07 57.6 3.2 22 185-206 3-24 (256)
362 3iev_A GTP-binding protein ERA 94.3 0.022 7.4E-07 58.9 3.4 23 185-207 12-34 (308)
363 1nrj_B SR-beta, signal recogni 94.2 0.021 7.2E-07 54.9 3.0 23 185-207 14-36 (218)
364 3t5d_A Septin-7; GTP-binding p 94.2 0.018 6.1E-07 58.3 2.6 22 185-206 10-31 (274)
365 2qmh_A HPR kinase/phosphorylas 94.2 0.043 1.5E-06 53.5 5.1 36 170-206 22-57 (205)
366 2bov_A RAla, RAS-related prote 94.2 0.022 7.4E-07 53.9 3.0 23 185-207 16-38 (206)
367 2j9r_A Thymidine kinase; TK1, 94.2 0.1 3.4E-06 51.3 7.8 53 313-370 101-162 (214)
368 1vg8_A RAS-related protein RAB 94.2 0.022 7.6E-07 54.0 3.1 23 185-207 10-32 (207)
369 2bme_A RAB4A, RAS-related prot 94.2 0.02 7E-07 53.1 2.7 23 185-207 12-34 (186)
370 3a8t_A Adenylate isopentenyltr 94.2 0.037 1.3E-06 58.2 4.8 26 182-207 39-64 (339)
371 2gf9_A RAS-related protein RAB 94.2 0.023 7.8E-07 53.3 3.0 23 185-207 24-46 (189)
372 1ksh_A ARF-like protein 2; sma 94.2 0.023 7.8E-07 53.0 3.0 26 182-207 17-42 (186)
373 3tkl_A RAS-related protein RAB 94.1 0.023 7.9E-07 53.3 3.0 23 185-207 18-40 (196)
374 2gf0_A GTP-binding protein DI- 94.1 0.022 7.4E-07 53.6 2.8 22 185-206 10-31 (199)
375 3cbq_A GTP-binding protein REM 94.1 0.02 6.9E-07 54.5 2.5 21 185-205 25-45 (195)
376 1uj2_A Uridine-cytidine kinase 94.1 0.025 8.7E-07 56.4 3.4 24 184-207 23-46 (252)
377 2dby_A GTP-binding protein; GD 94.1 0.022 7.5E-07 60.7 3.0 21 186-206 4-24 (368)
378 1jbk_A CLPB protein; beta barr 94.1 0.03 1E-06 51.7 3.6 27 181-207 41-67 (195)
379 3kkq_A RAS-related protein M-R 94.1 0.024 8.3E-07 52.5 3.0 23 185-207 20-42 (183)
380 1m7b_A RND3/RHOE small GTP-bin 94.1 0.022 7.7E-07 53.2 2.7 23 185-207 9-31 (184)
381 4fcw_A Chaperone protein CLPB; 94.1 0.028 9.4E-07 57.3 3.6 25 183-207 47-71 (311)
382 3bwd_D RAC-like GTP-binding pr 94.1 0.03 1E-06 51.7 3.6 22 185-206 10-31 (182)
383 2xb4_A Adenylate kinase; ATP-b 94.0 0.028 9.4E-07 55.1 3.4 21 185-205 2-22 (223)
384 2fg5_A RAB-22B, RAS-related pr 94.0 0.023 7.8E-07 53.6 2.8 23 185-207 25-47 (192)
385 1mh1_A RAC1; GTP-binding, GTPa 94.0 0.025 8.6E-07 52.3 3.0 22 185-206 7-28 (186)
386 2xtp_A GTPase IMAP family memb 94.0 0.025 8.7E-07 56.3 3.2 22 185-206 24-45 (260)
387 1jwy_B Dynamin A GTPase domain 94.0 0.032 1.1E-06 57.1 4.0 23 185-207 26-48 (315)
388 1zbd_A Rabphilin-3A; G protein 94.0 0.027 9.2E-07 53.4 3.2 23 185-207 10-32 (203)
389 3a1s_A Iron(II) transport prot 94.0 0.028 9.6E-07 56.6 3.5 22 185-206 7-28 (258)
390 3be4_A Adenylate kinase; malar 94.0 0.026 8.8E-07 54.9 3.1 25 182-206 4-28 (217)
391 2grj_A Dephospho-COA kinase; T 94.0 0.029 1E-06 54.1 3.4 23 183-205 12-34 (192)
392 2cjw_A GTP-binding protein GEM 94.0 0.026 8.9E-07 53.6 3.0 21 185-205 8-28 (192)
393 1z06_A RAS-related protein RAB 93.9 0.027 9.3E-07 52.8 3.1 22 185-206 22-43 (189)
394 3llu_A RAS-related GTP-binding 93.9 0.027 9.4E-07 53.3 3.0 24 185-208 22-45 (196)
395 4edh_A DTMP kinase, thymidylat 93.9 0.034 1.2E-06 54.5 3.8 27 181-207 4-30 (213)
396 2wsm_A Hydrogenase expression/ 93.9 0.027 9.2E-07 54.3 3.0 23 184-206 31-53 (221)
397 3v9p_A DTMP kinase, thymidylat 93.9 0.025 8.6E-07 56.1 2.8 28 180-207 22-49 (227)
398 2il1_A RAB12; G-protein, GDP, 93.9 0.026 8.9E-07 53.3 2.8 22 185-206 28-49 (192)
399 3oes_A GTPase rhebl1; small GT 93.9 0.025 8.7E-07 53.7 2.7 24 184-207 25-48 (201)
400 3i8s_A Ferrous iron transport 93.9 0.028 9.7E-07 57.0 3.2 22 185-206 5-26 (274)
401 2a5j_A RAS-related protein RAB 93.8 0.029 9.8E-07 52.8 3.0 23 185-207 23-45 (191)
402 3t5g_A GTP-binding protein RHE 93.8 0.027 9.1E-07 52.2 2.7 22 185-206 8-29 (181)
403 1x3s_A RAS-related protein RAB 93.8 0.029 1E-06 52.4 3.0 23 185-207 17-39 (195)
404 3dz8_A RAS-related protein RAB 93.8 0.026 9.1E-07 53.0 2.7 23 185-207 25-47 (191)
405 4dhe_A Probable GTP-binding pr 93.8 0.017 5.7E-07 55.7 1.3 23 184-206 30-52 (223)
406 1zd9_A ADP-ribosylation factor 93.8 0.03 1E-06 52.6 3.0 22 185-206 24-45 (188)
407 2f6r_A COA synthase, bifunctio 93.8 0.029 1E-06 57.2 3.2 21 184-204 76-96 (281)
408 3cph_A RAS-related protein SEC 93.8 0.03 1E-06 53.3 3.0 24 184-207 21-44 (213)
409 2atv_A RERG, RAS-like estrogen 93.8 0.031 1E-06 52.8 3.1 22 185-206 30-51 (196)
410 2bcg_Y Protein YP2, GTP-bindin 93.8 0.027 9.3E-07 53.5 2.7 23 185-207 10-32 (206)
411 2o52_A RAS-related protein RAB 93.8 0.029 1E-06 53.4 2.9 22 185-206 27-48 (200)
412 1zj6_A ADP-ribosylation factor 93.7 0.03 1E-06 52.4 2.9 23 184-206 17-39 (187)
413 3reg_A RHO-like small GTPase; 93.7 0.031 1E-06 52.6 3.0 23 185-207 25-47 (194)
414 4bas_A ADP-ribosylation factor 93.7 0.029 1E-06 52.6 2.9 22 185-206 19-40 (199)
415 2qu8_A Putative nucleolar GTP- 93.7 0.032 1.1E-06 54.3 3.2 22 185-206 31-52 (228)
416 2h57_A ADP-ribosylation factor 93.7 0.023 7.9E-07 53.3 2.1 22 185-206 23-44 (190)
417 3umf_A Adenylate kinase; rossm 93.7 0.037 1.3E-06 54.5 3.6 27 180-206 26-52 (217)
418 1e4v_A Adenylate kinase; trans 93.7 0.032 1.1E-06 54.0 3.1 21 185-205 2-22 (214)
419 2p5s_A RAS and EF-hand domain 93.7 0.031 1.1E-06 53.0 3.0 24 184-207 29-52 (199)
420 2f7s_A C25KG, RAS-related prot 93.7 0.034 1.2E-06 53.3 3.3 23 185-207 27-49 (217)
421 1a7j_A Phosphoribulokinase; tr 93.7 0.018 6.3E-07 59.1 1.4 24 182-205 4-27 (290)
422 1ltq_A Polynucleotide kinase; 93.6 0.037 1.3E-06 56.3 3.6 22 184-205 3-24 (301)
423 2h17_A ADP-ribosylation factor 93.6 0.028 9.5E-07 52.4 2.4 22 185-206 23-44 (181)
424 1ak2_A Adenylate kinase isoenz 93.6 0.04 1.4E-06 54.2 3.7 25 182-206 15-39 (233)
425 2ew1_A RAS-related protein RAB 93.6 0.03 1E-06 53.8 2.7 23 185-207 28-50 (201)
426 2aka_B Dynamin-1; fusion prote 93.6 0.039 1.3E-06 55.9 3.7 23 185-207 28-50 (299)
427 2iwr_A Centaurin gamma 1; ANK 93.6 0.026 9E-07 52.1 2.2 22 185-206 9-30 (178)
428 2fv8_A H6, RHO-related GTP-bin 93.5 0.032 1.1E-06 53.3 2.8 23 185-207 27-49 (207)
429 2q3h_A RAS homolog gene family 93.5 0.038 1.3E-06 52.2 3.2 23 184-206 21-43 (201)
430 3c5c_A RAS-like protein 12; GD 93.5 0.037 1.3E-06 52.0 3.1 23 185-207 23-45 (187)
431 3lv8_A DTMP kinase, thymidylat 93.4 0.04 1.4E-06 55.0 3.3 26 182-207 26-51 (236)
432 2j1l_A RHO-related GTP-binding 93.4 0.037 1.3E-06 53.3 3.0 22 185-206 36-57 (214)
433 2fh5_B SR-beta, signal recogni 93.4 0.041 1.4E-06 52.6 3.2 23 185-207 9-31 (214)
434 1gwn_A RHO-related GTP-binding 93.4 0.035 1.2E-06 53.4 2.7 23 185-207 30-52 (205)
435 2p65_A Hypothetical protein PF 93.3 0.038 1.3E-06 51.1 2.8 27 181-207 41-67 (187)
436 2fu5_C RAS-related protein RAB 93.3 0.026 8.7E-07 52.4 1.6 22 185-206 10-31 (183)
437 3zvl_A Bifunctional polynucleo 93.3 0.041 1.4E-06 59.4 3.4 26 180-205 255-280 (416)
438 4tmk_A Protein (thymidylate ki 93.2 0.046 1.6E-06 53.6 3.4 26 182-207 2-27 (213)
439 2gco_A H9, RHO-related GTP-bin 93.2 0.038 1.3E-06 52.5 2.7 23 185-207 27-49 (201)
440 2b6h_A ADP-ribosylation factor 93.2 0.036 1.2E-06 52.4 2.5 23 183-205 29-51 (192)
441 1sky_E F1-ATPase, F1-ATP synth 93.2 0.05 1.7E-06 59.6 3.9 35 171-206 140-174 (473)
442 3tmk_A Thymidylate kinase; pho 93.1 0.047 1.6E-06 53.7 3.3 27 181-207 3-29 (216)
443 3ld9_A DTMP kinase, thymidylat 93.1 0.055 1.9E-06 53.5 3.8 27 181-207 19-45 (223)
444 3exa_A TRNA delta(2)-isopenten 93.1 0.055 1.9E-06 56.4 3.8 25 183-207 3-27 (322)
445 2zts_A Putative uncharacterize 93.1 0.061 2.1E-06 52.5 4.1 60 311-370 133-206 (251)
446 2ocp_A DGK, deoxyguanosine kin 93.1 0.052 1.8E-06 53.6 3.6 26 182-207 1-26 (241)
447 3d3q_A TRNA delta(2)-isopenten 93.1 0.047 1.6E-06 57.4 3.4 24 184-207 8-31 (340)
448 1njg_A DNA polymerase III subu 93.1 0.053 1.8E-06 51.8 3.6 43 312-356 125-167 (250)
449 1p5z_B DCK, deoxycytidine kina 93.1 0.034 1.2E-06 55.7 2.2 27 181-207 22-48 (263)
450 3def_A T7I23.11 protein; chlor 93.0 0.047 1.6E-06 54.8 3.2 23 185-207 38-60 (262)
451 2atx_A Small GTP binding prote 93.0 0.043 1.5E-06 51.5 2.8 22 185-206 20-41 (194)
452 1h65_A Chloroplast outer envel 93.0 0.048 1.6E-06 54.9 3.2 23 185-207 41-63 (270)
453 2g3y_A GTP-binding protein GEM 93.0 0.055 1.9E-06 52.7 3.5 22 185-206 39-60 (211)
454 2h92_A Cytidylate kinase; ross 92.9 0.049 1.7E-06 52.6 3.0 24 183-206 3-26 (219)
455 3sr0_A Adenylate kinase; phosp 92.9 0.056 1.9E-06 52.7 3.4 21 185-205 2-22 (206)
456 2hf9_A Probable hydrogenase ni 92.9 0.049 1.7E-06 52.6 3.0 23 184-206 39-61 (226)
457 4djt_A GTP-binding nuclear pro 92.8 0.025 8.4E-07 54.4 0.7 22 185-206 13-34 (218)
458 3cpj_B GTP-binding protein YPT 92.7 0.055 1.9E-06 52.4 3.1 23 185-207 15-37 (223)
459 2hup_A RAS-related protein RAB 92.7 0.051 1.7E-06 51.8 2.8 22 185-206 31-52 (201)
460 3crm_A TRNA delta(2)-isopenten 92.7 0.06 2.1E-06 56.2 3.4 24 184-207 6-29 (323)
461 3cnl_A YLQF, putative uncharac 92.6 0.058 2E-06 54.5 3.3 24 184-207 100-123 (262)
462 2x77_A ADP-ribosylation factor 92.6 0.036 1.2E-06 51.9 1.5 22 184-205 23-44 (189)
463 2yc2_C IFT27, small RAB-relate 92.6 0.026 8.8E-07 53.4 0.5 22 185-206 22-43 (208)
464 4dcu_A GTP-binding protein ENG 92.6 0.05 1.7E-06 59.3 2.9 53 299-355 88-141 (456)
465 3pxi_A Negative regulator of g 92.6 0.22 7.6E-06 57.7 8.5 23 185-207 523-545 (758)
466 3euj_A Chromosome partition pr 92.5 0.19 6.4E-06 55.4 7.3 71 293-370 377-464 (483)
467 3tqf_A HPR(Ser) kinase; transf 92.5 0.1 3.6E-06 49.7 4.5 35 170-205 4-38 (181)
468 3cmu_A Protein RECA, recombina 92.5 0.37 1.3E-05 61.3 10.8 36 169-204 1065-1102(2050)
469 1sxj_D Activator 1 41 kDa subu 92.5 0.02 6.9E-07 59.3 -0.4 42 313-356 133-174 (353)
470 4gzl_A RAS-related C3 botulinu 92.4 0.058 2E-06 51.5 2.7 23 184-206 31-53 (204)
471 3q3j_B RHO-related GTP-binding 92.3 0.065 2.2E-06 51.7 3.0 22 185-206 29-50 (214)
472 2j0v_A RAC-like GTP-binding pr 92.2 0.062 2.1E-06 51.3 2.7 22 185-206 11-32 (212)
473 2r62_A Cell division protease 92.1 0.02 6.9E-07 57.2 -0.9 30 175-206 38-67 (268)
474 3foz_A TRNA delta(2)-isopenten 92.1 0.088 3E-06 54.7 3.8 25 183-207 10-34 (316)
475 1ypw_A Transitional endoplasmi 92.0 0.025 8.7E-07 66.3 -0.4 32 176-207 504-535 (806)
476 3eph_A TRNA isopentenyltransfe 91.8 0.088 3E-06 56.6 3.5 25 183-207 2-26 (409)
477 2x2e_A Dynamin-1; nitration, h 91.5 0.083 2.8E-06 55.5 3.0 23 185-207 33-55 (353)
478 2chg_A Replication factor C sm 91.5 0.095 3.3E-06 49.5 3.2 41 313-355 102-142 (226)
479 2orw_A Thymidine kinase; TMTK, 91.5 0.1 3.6E-06 49.6 3.3 52 313-369 76-136 (184)
480 3n70_A Transport activator; si 91.4 0.11 3.6E-06 47.2 3.2 42 313-356 76-117 (145)
481 3r7w_A Gtpase1, GTP-binding pr 91.4 0.1 3.6E-06 53.7 3.5 24 183-206 3-26 (307)
482 2eyu_A Twitching motility prot 91.3 0.00013 4.5E-09 74.2 -18.2 73 282-357 160-242 (261)
483 3syl_A Protein CBBX; photosynt 91.3 0.1 3.5E-06 53.0 3.4 27 181-207 65-91 (309)
484 1puj_A YLQF, conserved hypothe 91.3 0.11 3.8E-06 53.0 3.5 25 183-207 120-144 (282)
485 3p32_A Probable GTPase RV1496/ 91.2 0.12 4.1E-06 54.4 3.7 26 182-207 78-103 (355)
486 2hjg_A GTP-binding protein ENG 91.1 0.094 3.2E-06 56.8 2.9 22 185-206 5-26 (436)
487 3th5_A RAS-related C3 botulinu 90.3 0.042 1.5E-06 52.2 0.0 22 184-205 31-52 (204)
488 4hlc_A DTMP kinase, thymidylat 90.9 0.14 4.8E-06 49.7 3.7 25 183-207 2-26 (205)
489 1wxq_A GTP-binding protein; st 90.9 0.1 3.5E-06 56.0 3.0 23 185-207 2-24 (397)
490 3gmt_A Adenylate kinase; ssgci 90.9 0.12 4.1E-06 51.4 3.2 23 184-206 9-31 (230)
491 3geh_A MNME, tRNA modification 90.7 0.097 3.3E-06 57.4 2.5 25 182-206 223-247 (462)
492 3gj0_A GTP-binding nuclear pro 90.7 0.081 2.8E-06 50.9 1.7 22 185-206 17-39 (221)
493 1d2n_A N-ethylmaleimide-sensit 90.7 0.14 4.6E-06 51.4 3.4 25 181-205 62-86 (272)
494 3uk6_A RUVB-like 2; hexameric 90.5 0.14 4.6E-06 53.5 3.3 27 181-207 68-94 (368)
495 3l0i_B RAS-related protein RAB 90.5 0.029 1E-06 53.2 -1.7 22 185-206 35-56 (199)
496 1lw7_A Transcriptional regulat 90.3 0.15 5.1E-06 53.7 3.6 29 295-323 296-329 (365)
497 3t15_A Ribulose bisphosphate c 90.3 0.13 4.4E-06 52.6 3.0 25 182-206 35-59 (293)
498 3ec1_A YQEH GTPase; atnos1, at 90.2 0.13 4.4E-06 54.6 2.9 25 182-206 161-185 (369)
499 1f5n_A Interferon-induced guan 90.2 0.12 4E-06 58.4 2.7 34 171-207 29-62 (592)
500 2qgz_A Helicase loader, putati 90.2 0.17 5.6E-06 52.3 3.7 23 183-205 152-174 (308)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=3.7e-50 Score=429.58 Aligned_cols=222 Identities=24% Similarity=0.401 Sum_probs=196.7
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (640)
.+|+++||+++|..+ .+..++|+||||+|++||++||+||||||||||+|+|+|... +++|+|.++|+++..
T Consensus 23 ~mi~v~~ls~~y~~~----~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~--p~~G~I~i~G~~i~~~~ 96 (366)
T 3tui_C 23 HMIKLSNITKVFHQG----TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTEGSVLVDGQELTTLS 96 (366)
T ss_dssp CCEEEEEEEEEEECS----SSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECSSCC
T ss_pred ceEEEEeEEEEeCCC----CCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCC--CCceEEEECCEECCcCC
Confidence 379999999999421 124579999999999999999999999999999999999653 569999999999852
Q ss_pred -----hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHH
Q 006571 226 -----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (640)
Q Consensus 226 -----~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 300 (640)
..|++||||||++.+++.+||+||+.|+...+ ..++++.++++.++++.+||.+..+. ++.+|||||
T Consensus 97 ~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~---~~~~~~~~~~v~~lL~~vgL~~~~~~-----~~~~LSGGq 168 (366)
T 3tui_C 97 ESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDS-----YPSNLSGGQ 168 (366)
T ss_dssp HHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHTCGGGTTC-----CTTTSCHHH
T ss_pred HHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcC-----ChhhCCHHH
Confidence 24678999999999999999999999987654 24567778889999999999877665 467899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecC
Q 006571 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (640)
Q Consensus 301 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (640)
||||+|||||+.+|+||||||||+|||+.++..+++.|+++++ .|+|||++||++. .+.++||||++|++|++++.|+
T Consensus 169 kQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~-~~~~~aDrv~vl~~G~iv~~g~ 247 (366)
T 3tui_C 169 KQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISNGELIEQDT 247 (366)
T ss_dssp HHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEETTEEEECCB
T ss_pred HHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEEcC
Confidence 9999999999999999999999999999999999999999975 4999999999975 5778999999999999999999
Q ss_pred hHHHH
Q 006571 380 ASEAM 384 (640)
Q Consensus 380 ~~~~~ 384 (640)
++++.
T Consensus 248 ~~ev~ 252 (366)
T 3tui_C 248 VSEVF 252 (366)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99975
No 2
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=4.9e-50 Score=406.39 Aligned_cols=222 Identities=29% Similarity=0.450 Sum_probs=188.8
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
+|+++||+++|..+ ...+++|+||||+|++||++||+||||||||||+|+|+|.+. +.+|+|.++|+++..
T Consensus 1 ~l~~~~l~~~y~~~----~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~~~~~~ 74 (235)
T 3tif_A 1 MVKLKNVTKTYKMG----EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK--PTEGEVYIDNIKTNDLDD 74 (235)
T ss_dssp CEEEEEEEEEEEET----TEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCH
T ss_pred CEEEEEEEEEeCCC----CcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEEcccCCH
Confidence 37899999999421 123579999999999999999999999999999999999653 569999999998752
Q ss_pred -h---c-cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccc-cccccCccCCcCCHH
Q 006571 226 -S---L-KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ-DTMIGGSFVRGVSGG 299 (640)
Q Consensus 226 -~---~-~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-~t~vg~~~~~~LSGG 299 (640)
. . ++.||||+|++.+++.+||+||+.++...+.....+.++..+++.++++.++|.+.. +. .+.+||||
T Consensus 75 ~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LSgG 149 (235)
T 3tif_A 75 DELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANH-----KPNQLSGG 149 (235)
T ss_dssp HHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTC-----CGGGSCHH
T ss_pred HHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhC-----ChhhCCHH
Confidence 1 1 346999999999999999999999987543222345666777899999999997643 43 45789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEec
Q 006571 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (640)
Q Consensus 300 qrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (640)
|||||+|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||++. +.++||+|++|++|++++.+
T Consensus 150 q~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~--~~~~~d~i~~l~~G~i~~~~ 227 (235)
T 3tif_A 150 QQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKDGEVEREE 227 (235)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH--HHTTSSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH--HHHhCCEEEEEECCEEEEEc
Confidence 999999999999999999999999999999999999999999765 999999999975 45889999999999999999
Q ss_pred ChHHH
Q 006571 379 KASEA 383 (640)
Q Consensus 379 ~~~~~ 383 (640)
+++++
T Consensus 228 ~~~~~ 232 (235)
T 3tif_A 228 KLRGF 232 (235)
T ss_dssp ECC--
T ss_pred Chhhh
Confidence 88764
No 3
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=1e-49 Score=410.50 Aligned_cols=218 Identities=26% Similarity=0.479 Sum_probs=191.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC----
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~---- 224 (640)
+|+++||+++| +++++|+||||+|++||+++|+||||||||||+|+|+|.+. +.+|+|.++|+++.
T Consensus 24 ~l~i~~l~~~y--------~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~i~~~~~ 93 (263)
T 2olj_A 24 MIDVHQLKKSF--------GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED--FDEGEIIIDGINLKAKDT 93 (263)
T ss_dssp SEEEEEEEEEE--------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEESSSTTC
T ss_pred eEEEEeEEEEE--------CCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC--CCCcEEEECCEECCCccc
Confidence 69999999998 34679999999999999999999999999999999999653 56899999999873
Q ss_pred --hhccCcEEEEccCCCCCCCCCHHHHHHHHH-hccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHH
Q 006571 225 --KSLKSKIGFVTQDDVLFPHLTVKETLTYAA-LLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (640)
Q Consensus 225 --~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~-~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 301 (640)
..++++||||+|++.+++.+||+||+.++. ... ..+..+.+++++++++.+||.+..+.. +.+||||||
T Consensus 94 ~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LSgGqk 165 (263)
T 2olj_A 94 NLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVR---KWPREKAEAKAMELLDKVGLKDKAHAY-----PDSLSGGQA 165 (263)
T ss_dssp CHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSC-----GGGSCHHHH
T ss_pred cHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCC-----hhhCCHHHH
Confidence 124567999999999999999999999964 322 234455567889999999998776654 568999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChH
Q 006571 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (640)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (640)
|||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++. .+.++||+|++|++|++++.|+++
T Consensus 166 QRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~ 244 (263)
T 2olj_A 166 QRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMG-FAREVGDRVLFMDGGYIIEEGKPE 244 (263)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEECCHH
Confidence 9999999999999999999999999999999999999999877999999999965 467789999999999999999999
Q ss_pred HHHH
Q 006571 382 EAMA 385 (640)
Q Consensus 382 ~~~~ 385 (640)
++..
T Consensus 245 ~~~~ 248 (263)
T 2olj_A 245 DLFD 248 (263)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8753
No 4
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=8.3e-50 Score=411.06 Aligned_cols=217 Identities=28% Similarity=0.471 Sum_probs=191.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC----
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~---- 224 (640)
+|+++||+++| +++++|+||||+|++||+++|+||||||||||+|+|+|.+. +.+|+|.++|+++.
T Consensus 6 ~l~i~~l~~~y--------~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~~~~~~ 75 (262)
T 1b0u_A 6 KLHVIDLHKRY--------GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNINLVRD 75 (262)
T ss_dssp CEEEEEEEEEE--------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEECCEEEC
T ss_pred eEEEeeEEEEE--------CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEcccccc
Confidence 59999999998 34679999999999999999999999999999999999653 56899999999875
Q ss_pred -------------hhccCcEEEEccCCCCCCCCCHHHHHHHHH-hccCCCCccHHHHHHHHHHHHHHcCCCcc-cccccc
Q 006571 225 -------------KSLKSKIGFVTQDDVLFPHLTVKETLTYAA-LLRLPNTLTKQQKEKRAIDVINELGLERC-QDTMIG 289 (640)
Q Consensus 225 -------------~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~-~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~t~vg 289 (640)
..+++.+|||+|++.+++.+||+||+.++. ..+ ..+..+.+++++++++.+||.+. .+..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-- 150 (262)
T 1b0u_A 76 KDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKHDARERALKYLAKVGIDERAQGKY-- 150 (262)
T ss_dssp TTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT---CCCHHHHHHHHHHHHHHTTCCHHHHTSC--
T ss_pred ccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhcCC--
Confidence 124567999999999999999999999964 322 23445556788999999999876 6653
Q ss_pred CccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEE
Q 006571 290 GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 369 (640)
Q Consensus 290 ~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL 369 (640)
+.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++. .+..+||+|++|
T Consensus 151 ---~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l 226 (262)
T 1b0u_A 151 ---PVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHVIFL 226 (262)
T ss_dssp ---GGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSEEEEE
T ss_pred ---cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 5689999999999999999999999999999999999999999999999877999999999965 467789999999
Q ss_pred cCCeEEEecChHHHH
Q 006571 370 GKGSLLYFGKASEAM 384 (640)
Q Consensus 370 ~~G~iv~~G~~~~~~ 384 (640)
++|++++.|+++++.
T Consensus 227 ~~G~i~~~g~~~~~~ 241 (262)
T 1b0u_A 227 HQGKIEEEGDPEQVF 241 (262)
T ss_dssp ETTEEEEEECHHHHH
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999998875
No 5
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=9.1e-50 Score=413.25 Aligned_cols=218 Identities=29% Similarity=0.536 Sum_probs=191.5
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC--h-
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--K- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~--~- 225 (640)
.|+++||+++|. +.+.+|+||||+|++||+++|+||||||||||+|+|+|.+. +.+|+|.++|+++. .
T Consensus 7 ~l~i~~ls~~y~-------~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~--p~~G~I~~~G~~i~~~~~ 77 (275)
T 3gfo_A 7 ILKVEELNYNYS-------DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK--PSSGRILFDNKPIDYSRK 77 (275)
T ss_dssp EEEEEEEEEECT-------TSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEECCCSHH
T ss_pred EEEEEEEEEEEC-------CCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCeEEEECCEECCcccc
Confidence 699999999982 23459999999999999999999999999999999999653 56899999999983 1
Q ss_pred ---hccCcEEEEccCC--CCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHH
Q 006571 226 ---SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (640)
Q Consensus 226 ---~~~~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 300 (640)
.+++.||||||++ .++ .+||+||+.|+.... ..+.++..++++++++.+||.+..+.. +.+|||||
T Consensus 78 ~~~~~~~~ig~v~Q~~~~~~~-~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LSgGq 148 (275)
T 3gfo_A 78 GIMKLRESIGIVFQDPDNQLF-SASVYQDVSFGAVNM---KLPEDEIRKRVDNALKRTGIEHLKDKP-----THCLSFGQ 148 (275)
T ss_dssp HHHHHHHSEEEECSSGGGTCC-SSBHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSB-----GGGSCHHH
T ss_pred cHHHHhCcEEEEEcCcccccc-cCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----cccCCHHH
Confidence 3567899999986 345 689999999987643 345667778899999999998777654 56899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecC
Q 006571 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (640)
Q Consensus 301 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~-~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (640)
||||+|||||+.+|++|||||||+|||+.++..+++.|++++ ++|+|||++||++.. +.++||+|++|++|++++.|+
T Consensus 149 kQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~-~~~~~drv~~l~~G~i~~~g~ 227 (275)
T 3gfo_A 149 KKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDI-VPLYCDNVFVMKEGRVILQGN 227 (275)
T ss_dssp HHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSS-GGGGCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHH-HHHhCCEEEEEECCEEEEECC
Confidence 999999999999999999999999999999999999999997 569999999999764 678899999999999999999
Q ss_pred hHHHHH
Q 006571 380 ASEAMA 385 (640)
Q Consensus 380 ~~~~~~ 385 (640)
++++..
T Consensus 228 ~~~~~~ 233 (275)
T 3gfo_A 228 PKEVFA 233 (275)
T ss_dssp HHHHTH
T ss_pred HHHHhc
Confidence 998754
No 6
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=1.3e-49 Score=427.67 Aligned_cols=218 Identities=28% Similarity=0.478 Sum_probs=196.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--h
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--~ 226 (640)
.|+++||+++| +++.+|+||||+|++||+++|+||||||||||||+|+|... +++|+|.++|+++.. .
T Consensus 3 ~l~~~~l~~~y--------g~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~G~I~i~G~~~~~~~~ 72 (381)
T 3rlf_A 3 SVQLQNVTKAW--------GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMNDTPP 72 (381)
T ss_dssp CEEEEEEEEEE--------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTCCG
T ss_pred EEEEEeEEEEE--------CCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC--CCCeEEEECCEECCCCCH
Confidence 48999999998 45679999999999999999999999999999999999653 569999999999853 3
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHH
Q 006571 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (640)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (640)
.++.||||+|++.+||.+||+|||.|+...+ ..++++.+++++++++.+||.+..+. ++.+|||||||||+|
T Consensus 73 ~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r-----~p~~LSGGqrQRVai 144 (381)
T 3rlf_A 73 AERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDR-----KPKALSGGQRQRVAI 144 (381)
T ss_dssp GGSCEEEECTTCCCCTTSCHHHHHTHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTC-----CGGGSCHHHHHHHHH
T ss_pred HHCCEEEEecCCcCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcC-----ChhHCCHHHHHHHHH
Confidence 4578999999999999999999999987654 34667778889999999999877665 457999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHH
Q 006571 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (640)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (640)
||||+.+|++|||||||++||+..+.++.+.|+++.++ |+|+|++|||+. ++..+||||++|++|+++..|+++++..
T Consensus 145 ArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~~aDri~vl~~G~i~~~g~~~~l~~ 223 (381)
T 3rlf_A 145 GRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGRVAQVGKPLELYH 223 (381)
T ss_dssp HHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEEeCHHHHHh
Confidence 99999999999999999999999999999999999765 999999999965 5788999999999999999999999854
No 7
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=7.2e-50 Score=426.99 Aligned_cols=218 Identities=27% Similarity=0.456 Sum_probs=193.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeC----C
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY----S 224 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~----~ 224 (640)
.|+++||+++| +++++|+||||+|++||+++|+||||||||||||+|+|... +++|+|.++|+++ .
T Consensus 4 ~l~i~~ls~~y--------~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~G~I~i~G~~i~~~~~ 73 (359)
T 3fvq_A 4 ALHIGHLSKSF--------QNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ--PDSGEISLSGKTIFSKNT 73 (359)
T ss_dssp CEEEEEEEEEE--------TTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC--CSEEEEEETTEEEESSSC
T ss_pred EEEEEeEEEEE--------CCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEECccccc
Confidence 58999999998 45679999999999999999999999999999999999653 5699999999987 2
Q ss_pred --hhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHH
Q 006571 225 --KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (640)
Q Consensus 225 --~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (640)
...++.||||+|++.+||.+||+||+.|+...+ ..++++.+++++++++.+||.+..+. ++.+|||||||
T Consensus 74 ~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r-----~~~~LSGGq~Q 145 (359)
T 3fvq_A 74 NLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNG---KGRTAQERQRIEAMLELTGISELAGR-----YPHELSGGQQQ 145 (359)
T ss_dssp BCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTS---SCCSHHHHHHHHHHHHHHTCGGGTTS-----CGGGSCHHHHH
T ss_pred ccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCCchHhcC-----ChhhCCHHHHH
Confidence 134678999999999999999999999986543 23455667789999999999887765 45799999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChH
Q 006571 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (640)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~-~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (640)
||+|||||+.+|++|||||||+|||+..+.++.+.|+++. +.|+|||++|||+. ++..+||||++|++|+|+..|+++
T Consensus 146 RValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~-ea~~~aDri~vl~~G~i~~~g~~~ 224 (359)
T 3fvq_A 146 RAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDRE-EALQYADRIAVMKQGRILQTASPH 224 (359)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HHHHHCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEEECCEEEEEeCHH
Confidence 9999999999999999999999999999999999888875 46999999999965 578899999999999999999999
Q ss_pred HHHH
Q 006571 382 EAMA 385 (640)
Q Consensus 382 ~~~~ 385 (640)
++..
T Consensus 225 el~~ 228 (359)
T 3fvq_A 225 ELYR 228 (359)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9854
No 8
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=3.6e-49 Score=404.90 Aligned_cols=218 Identities=24% Similarity=0.406 Sum_probs=192.3
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++||+++| +++++|+||||+|++||+++|+||||||||||+|+|+|.+. +.+|+|.++|+++..
T Consensus 15 ~l~i~~l~~~y--------~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~~~~~~ 84 (256)
T 1vpl_A 15 AVVVKDLRKRI--------GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK--PSSGIVTVFGKNVVEEPH 84 (256)
T ss_dssp CEEEEEEEEEE--------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEETTTCHH
T ss_pred eEEEEEEEEEE--------CCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCccHH
Confidence 69999999998 34679999999999999999999999999999999999653 568999999998753
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHH
Q 006571 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (640)
Q Consensus 226 ~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (640)
..++.||||+|++.+++.+||+||+.++.... ....++..++++++++.+||.+..++. +..|||||||||+
T Consensus 85 ~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LSgGq~qRv~ 156 (256)
T 1vpl_A 85 EVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDR-----VSTYSKGMVRKLL 156 (256)
T ss_dssp HHHTTEEEECTTCCCCTTSBHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHCCGGGGGSB-----GGGCCHHHHHHHH
T ss_pred HHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHc---CCChHHHHHHHHHHHHHCCCchHhcCC-----hhhCCHHHHHHHH
Confidence 35678999999999999999999999876432 123444556788999999998777654 4689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHH
Q 006571 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (640)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (640)
|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||++||++. .+..+||++++|++|++++.|+++++.+
T Consensus 157 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 157 IARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp HHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 999999999999999999999999999999999999877999999999975 4667899999999999999999998864
No 9
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=4.6e-49 Score=396.45 Aligned_cols=211 Identities=30% Similarity=0.434 Sum_probs=185.8
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
+|+++||+++| +++++|+||||+|++||+++|+||||||||||+|+|+|.+. +.+|+|.++|+++..
T Consensus 4 ~l~~~~l~~~y--------~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~ 73 (224)
T 2pcj_A 4 ILRAENIKKVI--------RGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA--PTEGKVFLEGKEVDYTNE 73 (224)
T ss_dssp EEEEEEEEEEE--------TTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC--CSEEEEEETTEECCSSCH
T ss_pred EEEEEeEEEEE--------CCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCCCCH
Confidence 69999999998 34679999999999999999999999999999999999653 568999999998742
Q ss_pred ----hcc-CcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHH
Q 006571 226 ----SLK-SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (640)
Q Consensus 226 ----~~~-~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 300 (640)
.++ +.|+||+|++.+++.+||+||+.++...+ ..+..+.+++++++++.+||.+..+.. +.+|||||
T Consensus 74 ~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq 145 (224)
T 2pcj_A 74 KELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKM---GKPKKEAKERGEYLLSELGLGDKLSRK-----PYELSGGE 145 (224)
T ss_dssp HHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCC-----GGGSCHHH
T ss_pred HHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHH
Confidence 123 67999999999999999999999976543 233445567789999999998776654 56899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecC
Q 006571 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (640)
Q Consensus 301 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (640)
||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++. .+ +.||++++|++|++++.|+
T Consensus 146 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~-~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 146 QQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERE-LA-ELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp HHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HH-TTSSEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HH-HhCCEEEEEECCEEEEEee
Confidence 99999999999999999999999999999999999999999877999999999965 34 8899999999999999986
No 10
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=3.2e-49 Score=405.54 Aligned_cols=218 Identities=25% Similarity=0.397 Sum_probs=189.1
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
+|+++||+++| +++++|+||||+|++||+++|+||||||||||+|+|+|.+. +.+|+|.++|+++..
T Consensus 7 ~l~i~~l~~~y--------~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~~~~~~ 76 (257)
T 1g6h_A 7 ILRTENIVKYF--------GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK--ADEGRVYFENKDITNKEP 76 (257)
T ss_dssp EEEEEEEEEEE--------TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCH
T ss_pred EEEEeeeEEEE--------CCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCCCCH
Confidence 69999999998 34679999999999999999999999999999999999653 568999999998742
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhc-cCCC---------CccHHHHHHHHHHHHHHcCCCccccccccCccC
Q 006571 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALL-RLPN---------TLTKQQKEKRAIDVINELGLERCQDTMIGGSFV 293 (640)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~-~~~~---------~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~ 293 (640)
..++.||||+|++.+++.+||+||+.++... .... .....+.+++++++++.+||.+..++. +
T Consensus 77 ~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~ 151 (257)
T 1g6h_A 77 AELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRK-----A 151 (257)
T ss_dssp HHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSB-----G
T ss_pred HHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCC-----c
Confidence 2356799999999999999999999987532 1110 012234456788999999998776654 4
Q ss_pred CcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCe
Q 006571 294 RGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (640)
Q Consensus 294 ~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~ 373 (640)
.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++.. +.++||+|++|++|+
T Consensus 152 ~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~-~~~~~d~v~~l~~G~ 230 (257)
T 1g6h_A 152 GELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDI-VLNYIDHLYVMFNGQ 230 (257)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCST-TGGGCSEEEEEETTE
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH-HHHhCCEEEEEECCE
Confidence 6899999999999999999999999999999999999999999999998779999999999764 668899999999999
Q ss_pred EEEecChHH
Q 006571 374 LLYFGKASE 382 (640)
Q Consensus 374 iv~~G~~~~ 382 (640)
+++.|++++
T Consensus 231 i~~~g~~~~ 239 (257)
T 1g6h_A 231 IIAEGRGEE 239 (257)
T ss_dssp EEEEEESHH
T ss_pred EEEEeCHHH
Confidence 999999988
No 11
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=1.2e-48 Score=418.42 Aligned_cols=218 Identities=26% Similarity=0.496 Sum_probs=193.0
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--h
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--~ 226 (640)
.|+++||+++| +++.+|+||||+|++||+++|+||||||||||||+|+|... +++|+|.++|+++.. .
T Consensus 3 ~l~~~~l~~~y--------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~ 72 (359)
T 2yyz_A 3 SIRVVNLKKYF--------GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK--PTSGEIYFDDVLVNDIPP 72 (359)
T ss_dssp CEEEEEEEEEE--------TTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCG
T ss_pred EEEEEEEEEEE--------CCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC--CCccEEEECCEECCCCCh
Confidence 48999999998 34679999999999999999999999999999999999653 568999999999853 3
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHH
Q 006571 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (640)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (640)
.++.||||+|++.+||++||+||+.|+...+ ..++++.+++++++++.+||.+..+. ++.+|||||||||+|
T Consensus 73 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r-----~~~~LSgGq~QRval 144 (359)
T 2yyz_A 73 KYREVGMVFQNYALYPHMTVFENIAFPLRAR---RISKDEVEKRVVEIARKLLIDNLLDR-----KPTQLSGGQQQRVAL 144 (359)
T ss_dssp GGTTEEEECSSCCCCTTSCHHHHHHGGGSSS---CSHHHHTTHHHHHHHHHTTCGGGTTS-----CGGGSCHHHHHHHHH
T ss_pred hhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcC-----ChhhCCHHHHHHHHH
Confidence 4678999999999999999999999976432 23445556789999999999877665 457899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHH
Q 006571 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (640)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (640)
||||+.+|++|||||||+|||+.++..+.+.|+++.++ |+|+|++|||+. ++..+||+|++|++|+++..|+++++..
T Consensus 145 ArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~G~i~~~g~~~~l~~ 223 (359)
T 2yyz_A 145 ARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQA-EAMTMASRIAVFNQGKLVQYGTPDEVYD 223 (359)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999764 999999999965 5778999999999999999999999853
No 12
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.4e-48 Score=418.26 Aligned_cols=218 Identities=28% Similarity=0.516 Sum_probs=194.1
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--h
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--~ 226 (640)
.|+++||+++| +++++|+||||+|++||+++|+||||||||||||+|+|... +++|+|.++|+++.. .
T Consensus 3 ~l~~~~l~~~y--------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~ 72 (362)
T 2it1_A 3 EIKLENIVKKF--------GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK--PTSGKIYFDEKDVTELPP 72 (362)
T ss_dssp CEEEEEEEEES--------SSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCG
T ss_pred EEEEEeEEEEE--------CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--CCceEEEECCEECCcCCH
Confidence 48999999998 34679999999999999999999999999999999999653 568999999999853 3
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHH
Q 006571 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (640)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (640)
.++.||||+|++.+||++||+||+.|+...+ ..++++.+++++++++.+||.+..+. ++.+|||||||||+|
T Consensus 73 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r-----~~~~LSGGq~QRval 144 (362)
T 2it1_A 73 KDRNVGLVFQNWALYPHMTVYKNIAFPLELR---KAPREEIDKKVREVAKMLHIDKLLNR-----YPWQLSGGQQQRVAI 144 (362)
T ss_dssp GGTTEEEECTTCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTC-----CGGGSCHHHHHHHHH
T ss_pred hHCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhhC-----ChhhCCHHHHHHHHH
Confidence 3578999999999999999999999987543 23456667789999999999887665 457899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHH
Q 006571 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (640)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (640)
||||+.+|++|||||||||||+.++..+.+.|+++.++ |+|+|++|||+. ++..+||+|++|++|+++..|+++++..
T Consensus 145 ArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~~~g~~~~~~~ 223 (362)
T 2it1_A 145 ARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQA-EALAMADRIAVIREGEILQVGTPDEVYY 223 (362)
T ss_dssp HHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999999754 999999999965 5778999999999999999999999853
No 13
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=1.9e-48 Score=415.92 Aligned_cols=220 Identities=25% Similarity=0.473 Sum_probs=195.2
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (640)
..|+++||+++|. +++++|+||||+|++||+++|+||||||||||||+|+|... +++|+|.++|+++..
T Consensus 13 ~~l~~~~l~~~y~-------g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~ 83 (355)
T 1z47_A 13 MTIEFVGVEKIYP-------GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER--PTKGDVWIGGKRVTDLP 83 (355)
T ss_dssp EEEEEEEEEECCT-------TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTCC
T ss_pred ceEEEEEEEEEEc-------CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEECCEECCcCC
Confidence 4799999999871 24579999999999999999999999999999999999653 569999999999853
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHH
Q 006571 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (640)
Q Consensus 226 ~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (640)
..++.||||+|++.+||.+||+||+.|+...+ ..++++.+++++++++.+||.+..+. ++.+|||||||||+
T Consensus 84 ~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r-----~~~~LSGGq~QRva 155 (355)
T 1z47_A 84 PQKRNVGLVFQNYALFQHMTVYDNVSFGLREK---RVPKDEMDARVRELLRFMRLESYANR-----FPHELSGGQQQRVA 155 (355)
T ss_dssp GGGSSEEEECGGGCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTS-----CGGGSCHHHHHHHH
T ss_pred hhhCcEEEEecCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcC-----CcccCCHHHHHHHH
Confidence 34678999999999999999999999987643 23456667889999999999877665 45789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHH
Q 006571 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (640)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (640)
|||||+.+|++|||||||+|||+.++.++.+.|+++.++ |+|||++|||+. ++..+||+|++|++|+++..|+++++.
T Consensus 156 lArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~~~g~~~~l~ 234 (355)
T 1z47_A 156 LARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQE-EALEVADRVLVLHEGNVEQFGTPEEVY 234 (355)
T ss_dssp HHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999999764 999999999965 577899999999999999999999985
Q ss_pred H
Q 006571 385 A 385 (640)
Q Consensus 385 ~ 385 (640)
.
T Consensus 235 ~ 235 (355)
T 1z47_A 235 E 235 (355)
T ss_dssp H
T ss_pred h
Confidence 3
No 14
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=7.4e-49 Score=398.95 Aligned_cols=216 Identities=25% Similarity=0.404 Sum_probs=186.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
+|+++||+++| +++++|+||||+|++||+++|+||||||||||+|+|+|.+. +.+|+|.++|+++..
T Consensus 6 ~l~~~~l~~~y--------~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~ 75 (240)
T 1ji0_A 6 VLEVQSLHVYY--------GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR--AQKGKIIFNGQDITNKPA 75 (240)
T ss_dssp EEEEEEEEEEE--------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCH
T ss_pred eEEEEeEEEEE--------CCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCCH
Confidence 69999999998 34679999999999999999999999999999999999653 568999999998752
Q ss_pred -h-ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcC-CCccccccccCccCCcCCHHHHH
Q 006571 226 -S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-LERCQDTMIGGSFVRGVSGGERK 302 (640)
Q Consensus 226 -~-~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~t~vg~~~~~~LSGGqrq 302 (640)
. .++.||||+|++.+++.+||+||+.++.... ...++..++++++++.++ |.+..+. .+..|||||||
T Consensus 76 ~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~----~~~~~~~~~~~~~l~~~~~l~~~~~~-----~~~~LSgGq~q 146 (240)
T 1ji0_A 76 HVINRMGIALVPEGRRIFPELTVYENLMMGAYNR----KDKEGIKRDLEWIFSLFPRLKERLKQ-----LGGTLSGGEQQ 146 (240)
T ss_dssp HHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTC----CCSSHHHHHHHHHHHHCHHHHTTTTS-----BSSSSCHHHHH
T ss_pred HHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcC----CCHHHHHHHHHHHHHHcccHhhHhcC-----ChhhCCHHHHH
Confidence 1 2456999999999999999999999864211 112234566788899994 8766554 45789999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHH
Q 006571 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (640)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (640)
||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++. ++.++||+|++|++|++++.|++++
T Consensus 147 rv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~ 225 (240)
T 1ji0_A 147 MLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLETGQIVLEGKASE 225 (240)
T ss_dssp HHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEETTEEEEEEEHHH
T ss_pred HHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEEcCHHH
Confidence 999999999999999999999999999999999999999877999999999964 4678999999999999999999988
Q ss_pred HH
Q 006571 383 AM 384 (640)
Q Consensus 383 ~~ 384 (640)
+.
T Consensus 226 ~~ 227 (240)
T 1ji0_A 226 LL 227 (240)
T ss_dssp HH
T ss_pred Hh
Confidence 74
No 15
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=2.4e-48 Score=418.30 Aligned_cols=218 Identities=28% Similarity=0.481 Sum_probs=193.8
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++||+++| +++++|+||||+|++||+++|+||||||||||||+|+|... +++|+|.++|+++..
T Consensus 3 ~l~~~~l~~~y--------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~~~~~~ 72 (372)
T 1g29_1 3 GVRLVDVWKVF--------GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGDKLVADPEK 72 (372)
T ss_dssp EEEEEEEEEEE--------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEEEEGGG
T ss_pred EEEEEeEEEEE--------CCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC--CCccEEEECCEECccccc
Confidence 58999999998 34679999999999999999999999999999999999653 568999999998632
Q ss_pred -----hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHH
Q 006571 226 -----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (640)
Q Consensus 226 -----~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 300 (640)
..++.||||+|++.+||++||+||+.|+...+ ..++++.+++++++++.+||.+..+. ++.+|||||
T Consensus 73 ~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r-----~~~~LSGGq 144 (372)
T 1g29_1 73 GIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNR-----KPRELSGGQ 144 (372)
T ss_dssp TEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTC-----CGGGSCHHH
T ss_pred cccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcC-----CcccCCHHH
Confidence 23578999999999999999999999987643 23456667789999999999877665 457899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecC
Q 006571 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (640)
Q Consensus 301 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (640)
||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.++ |+|+|++|||+. ++..+||+|++|++|+++..|+
T Consensus 145 ~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~~~g~ 223 (372)
T 1g29_1 145 RQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNRGVLQQVGS 223 (372)
T ss_dssp HHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEeCCEEEEeCC
Confidence 99999999999999999999999999999999999999999764 999999999965 5778999999999999999999
Q ss_pred hHHHHH
Q 006571 380 ASEAMA 385 (640)
Q Consensus 380 ~~~~~~ 385 (640)
++++..
T Consensus 224 ~~~l~~ 229 (372)
T 1g29_1 224 PDEVYD 229 (372)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999853
No 16
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=1.2e-48 Score=418.07 Aligned_cols=218 Identities=27% Similarity=0.492 Sum_probs=193.4
Q ss_pred eEEEEeEEEEEeecccccccccc--ceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh-
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKD--ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~--iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~- 225 (640)
+|+++||+++| ++++ +|+||||+|++||+++|+||||||||||||+|+|... +++|+|.++|+++..
T Consensus 3 ~l~i~~l~~~y--------~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~ 72 (353)
T 1oxx_K 3 RIIVKNVSKVF--------KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV--PSTGELYFDDRLVASN 72 (353)
T ss_dssp CEEEEEEEEEE--------GGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC--CSEEEEEETTEEEEET
T ss_pred EEEEEeEEEEE--------CCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECccc
Confidence 48999999998 3456 9999999999999999999999999999999999653 568999999998632
Q ss_pred ------hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHH
Q 006571 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (640)
Q Consensus 226 ------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (640)
..++.||||+|++.+||++||+||+.|+...+ ..++++.+++++++++.+||.+..+. ++.+||||
T Consensus 73 ~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~~-----~~~~LSGG 144 (353)
T 1oxx_K 73 GKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNH-----FPRELSGA 144 (353)
T ss_dssp TEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTS-----CGGGSCHH
T ss_pred ccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcC-----ChhhCCHH
Confidence 34678999999999999999999999986432 24556667789999999999887765 45789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEec
Q 006571 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (640)
Q Consensus 300 qrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (640)
|||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.++ |+|+|++|||+. ++..+||+|++|++|+++..|
T Consensus 145 q~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~G~i~~~g 223 (353)
T 1oxx_K 145 QQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVKGKLVQVG 223 (353)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEc
Confidence 999999999999999999999999999999999999999999754 999999999965 577899999999999999999
Q ss_pred ChHHHHH
Q 006571 379 KASEAMA 385 (640)
Q Consensus 379 ~~~~~~~ 385 (640)
+++++..
T Consensus 224 ~~~~l~~ 230 (353)
T 1oxx_K 224 KPEDLYD 230 (353)
T ss_dssp CHHHHHH
T ss_pred CHHHHHh
Confidence 9999853
No 17
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=1.7e-48 Score=402.10 Aligned_cols=215 Identities=26% Similarity=0.405 Sum_probs=189.3
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++||++.| +++++|+||||+|++||++||+||||||||||+|+|+|.+. +.+|+|.++|+++..
T Consensus 11 ~l~~~~l~~~~--------~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~~~~~~ 80 (266)
T 4g1u_C 11 LLEASHLHYHV--------QQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLS--PSHGECHLLGQNLNSWQP 80 (266)
T ss_dssp EEEEEEEEEEE--------TTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSC--CSSCEEEETTEETTTSCH
T ss_pred eEEEEeEEEEe--------CCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEECCcCCH
Confidence 69999999998 45689999999999999999999999999999999999653 568999999999853
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHH
Q 006571 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (640)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (640)
..++.++|++|++.+++.+||+||+.++.... ...+.+++++++++.++|.+..+.. +.+|||||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~QRv 150 (266)
T 4g1u_C 81 KALARTRAVMRQYSELAFPFSVSEVIQMGRAPY-----GGSQDRQALQQVMAQTDCLALAQRD-----YRVLSGGEQQRV 150 (266)
T ss_dssp HHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS-----CSTTHHHHHHHHHHHTTCSTTTTSB-----GGGCCHHHHHHH
T ss_pred HHHhheEEEEecCCccCCCCCHHHHHHhhhhhc-----CcHHHHHHHHHHHHHcCChhHhcCC-----cccCCHHHHHHH
Confidence 34567999999999888899999999876432 1123456788999999998877654 468999999999
Q ss_pred HHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEe
Q 006571 305 CIGNEIII------NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (640)
Q Consensus 305 ~IA~aL~~------~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (640)
+|||||+. +|++|||||||+|||+.++..+++.|++++++ |+|||++||++. .+.++||+|++|++|++++.
T Consensus 151 ~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~-~~~~~~d~v~vl~~G~i~~~ 229 (266)
T 4g1u_C 151 QLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLN-LAALYADRIMLLAQGKLVAC 229 (266)
T ss_dssp HHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHH-HHHHHCSEEEEEETTEEEEE
T ss_pred HHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHH-HHHHhCCEEEEEECCEEEEE
Confidence 99999999 99999999999999999999999999999765 579999999965 47789999999999999999
Q ss_pred cChHHHH
Q 006571 378 GKASEAM 384 (640)
Q Consensus 378 G~~~~~~ 384 (640)
|+++++.
T Consensus 230 g~~~~~~ 236 (266)
T 4g1u_C 230 GTPEEVL 236 (266)
T ss_dssp ECHHHHC
T ss_pred cCHHHHh
Confidence 9999874
No 18
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=2.5e-48 Score=417.78 Aligned_cols=218 Identities=26% Similarity=0.471 Sum_probs=187.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--h
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--~ 226 (640)
.|+++||+++| +++.+|+||||+|++||+++|+||||||||||||+|+|... +++|+|.++|+++.. .
T Consensus 11 ~l~~~~l~~~y--------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~ 80 (372)
T 1v43_A 11 EVKLENLTKRF--------GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDVTYLPP 80 (372)
T ss_dssp CEEEEEEEEEE--------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCG
T ss_pred eEEEEEEEEEE--------CCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCceEEEECCEECCCCCh
Confidence 49999999998 34679999999999999999999999999999999999653 568999999999753 3
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHH
Q 006571 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (640)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (640)
.++.||||+|++.+||++||+||+.|+...+ ..++++.+++++++++.+||.+..+. ++.+|||||||||+|
T Consensus 81 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r-----~~~~LSGGq~QRval 152 (372)
T 1v43_A 81 KDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNR-----YPAQLSGGQRQRVAV 152 (372)
T ss_dssp GGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTS-----CTTTCCSSCHHHHHH
T ss_pred hhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhHhcC-----ChhhCCHHHHHHHHH
Confidence 3578999999999999999999999975432 23556667789999999999877665 457899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHH
Q 006571 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (640)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (640)
||||+.+|++|||||||++||+.++..+.+.|+++.++ |.|+|++|||+. ++..+||+|++|++|+++..|+++++..
T Consensus 153 ArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~~~g~~~~l~~ 231 (372)
T 1v43_A 153 ARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNRGQLLQIGSPTEVYL 231 (372)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999765 999999999965 5778999999999999999999999853
No 19
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=1.8e-48 Score=409.00 Aligned_cols=215 Identities=29% Similarity=0.501 Sum_probs=180.5
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (640)
..|+++||+|+|+ +.+++|+||||+|++||++||+||||||||||+++|+|.+ . +.+|+|.+||+++..
T Consensus 52 ~~i~~~~vs~~y~-------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~-~-p~~G~I~i~G~~i~~~~ 122 (306)
T 3nh6_A 52 GRIEFENVHFSYA-------DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFY-D-ISSGCIRIDGQDISQVT 122 (306)
T ss_dssp CCEEEEEEEEESS-------TTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSS-C-CSEEEEEETTEETTSBC
T ss_pred CeEEEEEEEEEcC-------CCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCC-C-CCCcEEEECCEEcccCC
Confidence 3699999999982 2457999999999999999999999999999999999854 3 468999999999853
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcC-------CCccccccccCccCCcC
Q 006571 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-------LERCQDTMIGGSFVRGV 296 (640)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~t~vg~~~~~~L 296 (640)
.+|++||||+|++.+|+ .||+|||.|+... ...+ ++.++++..+ +++..++.+|. ....|
T Consensus 123 ~~~~r~~i~~v~Q~~~lf~-~Tv~eNi~~~~~~-----~~~~----~~~~~~~~~~l~~~i~~lp~gl~t~~~~-~g~~L 191 (306)
T 3nh6_A 123 QASLRSHIGVVPQDTVLFN-DTIADNIRYGRVT-----AGND----EVEAAAQAAGIHDAIMAFPEGYRTQVGE-RGLKL 191 (306)
T ss_dssp HHHHHHTEEEECSSCCCCS-EEHHHHHHTTSTT-----CCHH----HHHHHHHHHTCHHHHHHSTTGGGCEEST-TSBCC
T ss_pred HHHHhcceEEEecCCccCc-ccHHHHHHhhccc-----CCHH----HHHHHHHHhCcHHHHHhccchhhhHhcC-CcCCC
Confidence 46788999999999996 5999999987421 1222 1222333322 34566777764 45679
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEE
Q 006571 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (640)
Q Consensus 297 SGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (640)
||||||||+|||||+.+|+||||||||++||+.++..|++.|+++.+ ++|||+++|+++. + ..||+|++|++|+|++
T Consensus 192 SGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~~-~-~~aD~i~vl~~G~iv~ 268 (306)
T 3nh6_A 192 SGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA-NRTTIVVAHRLST-V-VNADQILVIKDGCIVE 268 (306)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT-TSEEEEECCSHHH-H-HTCSEEEEEETTEEEE
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEEcChHH-H-HcCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999865 7999999999764 4 4599999999999999
Q ss_pred ecChHHHHH
Q 006571 377 FGKASEAMA 385 (640)
Q Consensus 377 ~G~~~~~~~ 385 (640)
.|++++++.
T Consensus 269 ~G~~~el~~ 277 (306)
T 3nh6_A 269 RGRHEALLS 277 (306)
T ss_dssp EECHHHHHH
T ss_pred ECCHHHHHh
Confidence 999999875
No 20
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=1.1e-47 Score=396.21 Aligned_cols=219 Identities=25% Similarity=0.420 Sum_probs=187.3
Q ss_pred eEEEEeEEEEEeecccccccc---ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh
Q 006571 149 YLKFTDVTYKVILKGMTSSEE---KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~---~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~ 225 (640)
+|+++||+++|.. ++ +++|+||||+|++||+++|+||||||||||+|+|+|.+. +.+|+|.++|+++..
T Consensus 2 ~l~~~~l~~~y~~------~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~I~~~g~~~~~ 73 (266)
T 2yz2_A 2 RIEVVNVSHIFHR------GTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIE--PTSGDVLYDGERKKG 73 (266)
T ss_dssp CEEEEEEEEEEST------TSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECCH
T ss_pred EEEEEEEEEEecC------CCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEECCEECch
Confidence 4899999999820 12 579999999999999999999999999999999999653 568999999998864
Q ss_pred -hccCcEEEEccCC-CCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCC--ccccccccCccCCcCCHHHH
Q 006571 226 -SLKSKIGFVTQDD-VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE--RCQDTMIGGSFVRGVSGGER 301 (640)
Q Consensus 226 -~~~~~i~yV~Q~~-~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~t~vg~~~~~~LSGGqr 301 (640)
.+++.||||+|++ .+++.+||+||+.++.... .+.++.+++++++++.+||. +..++. +.+||||||
T Consensus 74 ~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~----~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~~~LSgGq~ 144 (266)
T 2yz2_A 74 YEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNF----YPDRDPVPLVKKAMEFVGLDFDSFKDRV-----PFFLSGGEK 144 (266)
T ss_dssp HHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTT----CTTSCSHHHHHHHHHHTTCCHHHHTTCC-----GGGSCHHHH
T ss_pred HHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhc----CCHHHHHHHHHHHHHHcCcCCcccccCC-----hhhCCHHHH
Confidence 3567899999995 4566789999999875321 11122345688899999998 766654 468999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChH
Q 006571 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (640)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (640)
|||+|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||++||++.. +..+||++++|++|++++.|+++
T Consensus 145 qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~-~~~~~d~v~~l~~G~i~~~g~~~ 223 (266)
T 2yz2_A 145 RRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIET-VINHVDRVVVLEKGKKVFDGTRM 223 (266)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTT-TGGGCSEEEEEETTEEEEEEEHH
T ss_pred HHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999998779999999999764 66789999999999999999999
Q ss_pred HHHH
Q 006571 382 EAMA 385 (640)
Q Consensus 382 ~~~~ 385 (640)
++..
T Consensus 224 ~~~~ 227 (266)
T 2yz2_A 224 EFLE 227 (266)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8864
No 21
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=6.1e-48 Score=411.50 Aligned_cols=213 Identities=29% Similarity=0.498 Sum_probs=188.5
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--h
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--~ 226 (640)
+|+++||+++| +++ +|+||||+|++||+++|+||||||||||||+|+|... +++|+|.++|+++.. .
T Consensus 1 ml~~~~l~~~y--------~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i~~~~~ 69 (348)
T 3d31_A 1 MIEIESLSRKW--------KNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVTDLSP 69 (348)
T ss_dssp CEEEEEEEEEC--------SSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC--CSEEEEEETTEECTTSCH
T ss_pred CEEEEEEEEEE--------CCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCC--CCCcEEEECCEECCCCch
Confidence 37899999998 345 9999999999999999999999999999999999653 568999999999853 3
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHH
Q 006571 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (640)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (640)
.++.||||+|++.+||++||+||+.|+...+. .++. ++++++++.++|.+..+.. +.+|||||||||+|
T Consensus 70 ~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~---~~~~---~~v~~~l~~~~L~~~~~~~-----~~~LSgGq~QRval 138 (348)
T 3d31_A 70 EKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKK---IKDP---KRVLDTARDLKIEHLLDRN-----PLTLSGGEQQRVAL 138 (348)
T ss_dssp HHHTCEEECTTCCCCTTSCHHHHHHHHHHHHC---CCCH---HHHHHHHHHTTCTTTTTSC-----GGGSCHHHHHHHHH
T ss_pred hhCcEEEEecCcccCCCCCHHHHHHHHHHHcC---CCHH---HHHHHHHHHcCCchHhcCC-----hhhCCHHHHHHHHH
Confidence 46789999999999999999999999875431 1111 6788999999998877654 57899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHH
Q 006571 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (640)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (640)
||||+.+|++|||||||+|||+.++..+.+.|+++.+ .|+|+|++||++. ++..+||+|++|++|+++..|+++++.
T Consensus 139 AraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-~~~~~adri~vl~~G~i~~~g~~~~~~ 216 (348)
T 3d31_A 139 ARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMDGKLIQVGKPEEIF 216 (348)
T ss_dssp HHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred HHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999999975 4999999999964 577899999999999999999999885
No 22
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=2e-50 Score=459.72 Aligned_cols=353 Identities=21% Similarity=0.272 Sum_probs=245.8
Q ss_pred HhHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchh
Q 006571 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSG 88 (640)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 88 (640)
+..++.+++.++..+...|.+...++||+|+.+..+.+++.+..........+.....+...........-..+.-++.|
T Consensus 189 ~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g 268 (587)
T 3qf4_A 189 PLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIVFALPLFIFIVNMGMIAVLWFG 268 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566678888888999999999999999999988888888766544433221100000000000000011112234567
Q ss_pred hhHhhhhhhhhhhhhccccCCC----Ccc------------ccccCCCCCCCCCccccccccCCCCCCCCCCCCCeeEEE
Q 006571 89 AALSRASSASLGLSFSFTGFTM----PPD------------EIADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKF 152 (640)
Q Consensus 89 ~~~~~~~~~~~g~~~~~~~~~~----~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 152 (640)
+.++..+..+.|.++++..+.. |.. ..+..+.....+.++..+.. ......+.....|++
T Consensus 269 ~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~----~~~~~~~~~~~~i~~ 344 (587)
T 3qf4_A 269 GVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIEEA----DNALALPNVEGSVSF 344 (587)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCCC----TTCBCCSCCCCCEEE
T ss_pred HHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCC----CCccccCCCCCcEEE
Confidence 7777777777776665543221 111 11111111111101100000 000011122346999
Q ss_pred EeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hcc
Q 006571 153 TDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLK 228 (640)
Q Consensus 153 ~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~~~ 228 (640)
+||+|+|+ .+++++|+|+||+|++||++||+||||||||||+|+|+|.+ + +.+|+|.+||+++.+ .+|
T Consensus 345 ~~v~~~y~------~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~-~-~~~G~i~i~g~~i~~~~~~~~r 416 (587)
T 3qf4_A 345 ENVEFRYF------ENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLI-D-PERGRVEVDELDVRTVKLKDLR 416 (587)
T ss_dssp EEEEECSS------SSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSS-C-CSEEEEEESSSBGGGBCHHHHH
T ss_pred EEEEEEcC------CCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc-c-CCCcEEEECCEEcccCCHHHHH
Confidence 99999983 23567999999999999999999999999999999999854 3 468999999999853 467
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHH-----HHHHHHHcCCCccccccccCccCCcCCHHHHHH
Q 006571 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKR-----AIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (640)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (640)
++|+||+|++.+|+. ||+|||.++.. ..++++..+. +++.++ .+++..++.+|. .+.+||||||||
T Consensus 417 ~~i~~v~Q~~~lf~~-tv~eni~~~~~-----~~~~~~~~~~~~~~~~~~~i~--~l~~g~~~~~~~-~~~~LSgGqrQr 487 (587)
T 3qf4_A 417 GHISAVPQETVLFSG-TIKENLKWGRE-----DATDDEIVEAAKIAQIHDFII--SLPEGYDSRVER-GGRNFSGGQKQR 487 (587)
T ss_dssp HHEEEECSSCCCCSE-EHHHHHTTTCS-----SCCHHHHHHHHHHTTCHHHHH--TSSSGGGCEECS-SSCSSCHHHHHH
T ss_pred hheEEECCCCcCcCc-cHHHHHhccCC-----CCCHHHHHHHHHHhCcHHHHH--hcccchhhHhcC-CCCCcCHHHHHH
Confidence 889999999999975 99999987632 1222222111 222332 456678888875 456799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHH
Q 006571 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (640)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (640)
++|||||+++|+||+||||||+||+.++..+.+.|+++. +|+|+|+++|+++. ...||+|++|++|++++.|+++|+
T Consensus 488 v~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~--~~~~d~i~vl~~G~i~~~g~~~el 564 (587)
T 3qf4_A 488 LSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIPT--ALLADKILVLHEGKVAGFGTHKEL 564 (587)
T ss_dssp HHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHHH--HTTSSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChHH--HHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999999975 58999999999764 468999999999999999999998
Q ss_pred HH
Q 006571 384 MA 385 (640)
Q Consensus 384 ~~ 385 (640)
++
T Consensus 565 ~~ 566 (587)
T 3qf4_A 565 LE 566 (587)
T ss_dssp HH
T ss_pred Hh
Confidence 75
No 23
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=4.6e-50 Score=456.10 Aligned_cols=351 Identities=24% Similarity=0.337 Sum_probs=248.6
Q ss_pred HhHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchh
Q 006571 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSG 88 (640)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 88 (640)
+..++.++..++..+...|.+...++||+|+.+..+.+++.+..........+.....+...........-..+.-+..|
T Consensus 187 ~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g 266 (578)
T 4a82_A 187 KLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVG 266 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677788888899999999999999999988888888766554443322111111110001111111123334577
Q ss_pred hhHhhhhhhhhhhhhccccCC----CCcccc------------ccCCCCCCCCCccccccccCCCCCCCCCCCCCeeEEE
Q 006571 89 AALSRASSASLGLSFSFTGFT----MPPDEI------------ADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKF 152 (640)
Q Consensus 89 ~~~~~~~~~~~g~~~~~~~~~----~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 152 (640)
+.++..+..+.|.++++..+. .|...+ +..+.+...+.+++.+... .....+.....|++
T Consensus 267 ~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~----~~~~~~~~~~~i~~ 342 (578)
T 4a82_A 267 AYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNGV----GAQPIEIKQGRIDI 342 (578)
T ss_dssp HHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCCCT----TCCCCCCCSCCEEE
T ss_pred HHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCC----CccccCCCCCeEEE
Confidence 777777777777777665432 121111 1111111111111111000 00011112346999
Q ss_pred EeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hcc
Q 006571 153 TDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLK 228 (640)
Q Consensus 153 ~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~~~ 228 (640)
+||+|+|+ .+++++|+|+||+|++||++||+||||||||||+|+|+|.. + +.+|+|.+||+++.+ .+|
T Consensus 343 ~~v~~~y~------~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~-~-p~~G~i~~~g~~~~~~~~~~~r 414 (578)
T 4a82_A 343 DHVSFQYN------DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFY-D-VTSGQILIDGHNIKDFLTGSLR 414 (578)
T ss_dssp EEEEECSC------SSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSS-C-CSEEEEEETTEEGGGSCHHHHH
T ss_pred EEEEEEcC------CCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCC-C-CCCcEEEECCEEhhhCCHHHHh
Confidence 99999983 23467999999999999999999999999999999999854 3 468999999999853 467
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHc-------CCCccccccccCccCCcCCHHHH
Q 006571 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL-------GLERCQDTMIGGSFVRGVSGGER 301 (640)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~l-------gL~~~~~t~vg~~~~~~LSGGqr 301 (640)
+++|||+|++.+|+. ||+||+.++.. ..++++ +.+.++.. .+++..+|.+|.. ..+||||||
T Consensus 415 ~~i~~v~Q~~~l~~~-tv~eni~~~~~-----~~~~~~----~~~~~~~~~~~~~~~~lp~g~~t~~~~~-g~~LSgGq~ 483 (578)
T 4a82_A 415 NQIGLVQQDNILFSD-TVKENILLGRP-----TATDEE----VVEAAKMANAHDFIMNLPQGYDTEVGER-GVKLSGGQK 483 (578)
T ss_dssp HTEEEECSSCCCCSS-BHHHHHGGGCS-----SCCHHH----HHHHHHHTTCHHHHHTSTTGGGCBCCGG-GTTSCHHHH
T ss_pred hheEEEeCCCccCcc-cHHHHHhcCCC-----CCCHHH----HHHHHHHhCcHHHHHhCcchhhhhhccC-CCcCCHHHH
Confidence 889999999999976 99999998631 112222 23333332 3566788888754 567999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChH
Q 006571 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (640)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (640)
||++|||||+++|++|+|||||||||+.++..+.+.|+++. +++|+|+++|+++. + +.||+|++|++|++++.|+++
T Consensus 484 Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-~-~~~d~i~~l~~G~i~~~g~~~ 560 (578)
T 4a82_A 484 QRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLST-I-THADKIVVIENGHIVETGTHR 560 (578)
T ss_dssp HHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGG-T-TTCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999885 47999999999875 4 669999999999999999999
Q ss_pred HHHH
Q 006571 382 EAMA 385 (640)
Q Consensus 382 ~~~~ 385 (640)
|+.+
T Consensus 561 el~~ 564 (578)
T 4a82_A 561 ELIA 564 (578)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9874
No 24
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=1.1e-47 Score=392.66 Aligned_cols=220 Identities=24% Similarity=0.297 Sum_probs=180.0
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
+|+++||+++| +++++|+||||+|++||+++|+||||||||||+|+|+|....++.+|+|.++|+++..
T Consensus 3 ~l~~~~l~~~y--------~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~ 74 (250)
T 2d2e_A 3 QLEIRDLWASI--------DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSP 74 (250)
T ss_dssp EEEEEEEEEEE--------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCH
T ss_pred eEEEEeEEEEE--------CCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCH
Confidence 58999999998 3467999999999999999999999999999999999962123568999999998752
Q ss_pred -h-ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCccCCc-CCHHHH
Q 006571 226 -S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRG-VSGGER 301 (640)
Q Consensus 226 -~-~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~-LSGGqr 301 (640)
. .++.++||+|++.+++.+||+||+.++............+..+++.++++.+||. +..++. +.. ||||||
T Consensus 75 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~~~LSgGqk 149 (250)
T 2d2e_A 75 DERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRY-----LNEGFSGGEK 149 (250)
T ss_dssp HHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSB-----TTCC----HH
T ss_pred HHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCC-----cccCCCHHHH
Confidence 1 2456999999999999999999999865321111122334456788999999994 666654 456 999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhc-cCEEEEEcCCeEEEecCh
Q 006571 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHK-FDKLILLGKGSLLYFGKA 380 (640)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~-~D~i~vL~~G~iv~~G~~ 380 (640)
|||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++. .+... ||+|++|++|++++.|++
T Consensus 150 Qrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~~d~v~~l~~G~i~~~g~~ 228 (250)
T 2d2e_A 150 KRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQR-ILNYIQPDKVHVMMDGRVVATGGP 228 (250)
T ss_dssp HHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSG-GGGTSCCSEEEEEETTEEEEEESH
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhcCCEEEEEECCEEEEEeCH
Confidence 9999999999999999999999999999999999999999767999999999975 35566 599999999999999998
Q ss_pred HH
Q 006571 381 SE 382 (640)
Q Consensus 381 ~~ 382 (640)
+.
T Consensus 229 ~~ 230 (250)
T 2d2e_A 229 EL 230 (250)
T ss_dssp HH
T ss_pred HH
Confidence 73
No 25
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=1.6e-47 Score=389.19 Aligned_cols=212 Identities=25% Similarity=0.432 Sum_probs=184.7
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--hc
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SL 227 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--~~ 227 (640)
|+++||+++| ++ +|+||||+|++ |+++|+||||||||||+|+|+|.+. +.+|+|.++|+++.. ..
T Consensus 2 l~~~~l~~~y--------~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~ 68 (240)
T 2onk_A 2 FLKVRAEKRL--------GN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK--PDRGEVRLNGADITPLPPE 68 (240)
T ss_dssp CEEEEEEEEE--------TT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCTT
T ss_pred EEEEEEEEEe--------CC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCchh
Confidence 6899999998 22 59999999999 9999999999999999999999653 568999999998753 34
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHH
Q 006571 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (640)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (640)
+++||||+|++.+++.+||+||+.++...+ . ....+++++++++.+||.+..+.. +.+|||||||||+||
T Consensus 69 ~~~i~~v~q~~~l~~~ltv~enl~~~~~~~---~--~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGqkqRv~lA 138 (240)
T 2onk_A 69 RRGIGFVPQDYALFPHLSVYRNIAYGLRNV---E--RVERDRRVREMAEKLGIAHLLDRK-----PARLSGGERQRVALA 138 (240)
T ss_dssp TSCCBCCCSSCCCCTTSCHHHHHHTTCTTS---C--HHHHHHHHHHHHHTTTCTTTTTCC-----GGGSCHHHHHHHHHH
T ss_pred hCcEEEEcCCCccCCCCcHHHHHHHHHHHc---C--CchHHHHHHHHHHHcCCHHHhcCC-----hhhCCHHHHHHHHHH
Confidence 678999999999999999999999864321 1 122356788999999998776654 568999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHH
Q 006571 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (640)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (640)
|||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||++. ++..+||++++|++|++++.|+++++..
T Consensus 139 ral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 216 (240)
T 2onk_A 139 RALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLNGRIVEKGKLKELFS 216 (240)
T ss_dssp HHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999999754 999999999965 4678899999999999999999998753
No 26
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=3.2e-49 Score=449.57 Aligned_cols=350 Identities=21% Similarity=0.285 Sum_probs=249.1
Q ss_pred HhHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchh
Q 006571 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSG 88 (640)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 88 (640)
+..++.++...+..+...|.+...++||+|+.+....+++.+..........+.....+...........-..+.-++.|
T Consensus 191 ~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g 270 (582)
T 3b5x_A 191 KISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIASLALFAVLFLA 270 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555677778888899999999999999999999988888777655544332111111110011111111122234467
Q ss_pred hhHhhhhhhhhhhhhccccCCC----Cccc------------cccCCCCCCCCCccccccccCCCCCCCCCCCCCeeEEE
Q 006571 89 AALSRASSASLGLSFSFTGFTM----PPDE------------IADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKF 152 (640)
Q Consensus 89 ~~~~~~~~~~~g~~~~~~~~~~----~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 152 (640)
+.++..|..+.|.++.+..+.. |... .+..+.....+.+++.+. ... ..+.....|++
T Consensus 271 ~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~-----~~~-~~~~~~~~i~~ 344 (582)
T 3b5x_A 271 SVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERDN-----GKY-EAERVNGEVDV 344 (582)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCC-----CCC-CCCCCCCeEEE
Confidence 7777777777777766654321 1111 111111111111111100 000 01111346999
Q ss_pred EeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hcc
Q 006571 153 TDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLK 228 (640)
Q Consensus 153 ~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~~~ 228 (640)
+||+|+|+ .+++++|+|+|+++++||++||+||||||||||+|+|+|.. + +.+|+|.+||+++.+ .+|
T Consensus 345 ~~v~~~y~------~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~-~-p~~G~i~~~g~~~~~~~~~~~~ 416 (582)
T 3b5x_A 345 KDVTFTYQ------GKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFY-D-VDSGSICLDGHDVRDYKLTNLR 416 (582)
T ss_pred EEEEEEcC------CCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCC-C-CCCCEEEECCEEhhhCCHHHHh
Confidence 99999982 11367999999999999999999999999999999999854 3 468999999998742 467
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCC-------CccccccccCccCCcCCHHHH
Q 006571 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-------ERCQDTMIGGSFVRGVSGGER 301 (640)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~t~vg~~~~~~LSGGqr 301 (640)
+++|||+|++.+|+. ||+|||.++.. + ..+ +++++++++.+++ +++.||.+|.. ..+||||||
T Consensus 417 ~~i~~v~Q~~~l~~~-tv~eni~~~~~---~-~~~----~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~-~~~LSgGq~ 486 (582)
T 3b5x_A 417 RHFALVSQNVHLFND-TIANNIAYAAE---G-EYT----REQIEQAARQAHAMEFIENMPQGLDTVIGEN-GTSLSGGQR 486 (582)
T ss_pred cCeEEEcCCCccccc-cHHHHHhccCC---C-CCC----HHHHHHHHHHCCCHHHHHhCcccccchhcCC-CCcCCHHHH
Confidence 889999999999975 99999998631 1 122 2335555555554 34667777654 577999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChH
Q 006571 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (640)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (640)
||++|||||+++|+||+|||||++||+.++..+.+.|+++.+ |+|+|+++|+++. + +.||+|++|++|++++.|+++
T Consensus 487 qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~-~-~~~d~i~~l~~G~i~~~g~~~ 563 (582)
T 3b5x_A 487 QRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK-NKTVLVIAHRLST-I-EQADEILVVDEGEIIERGRHA 563 (582)
T ss_pred HHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHHH-H-HhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999999865 9999999999764 3 579999999999999999999
Q ss_pred HHHH
Q 006571 382 EAMA 385 (640)
Q Consensus 382 ~~~~ 385 (640)
++.+
T Consensus 564 ~l~~ 567 (582)
T 3b5x_A 564 DLLA 567 (582)
T ss_pred HHHh
Confidence 9864
No 27
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.6e-49 Score=453.26 Aligned_cols=351 Identities=24% Similarity=0.285 Sum_probs=249.3
Q ss_pred HhHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchh
Q 006571 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSG 88 (640)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 88 (640)
+..++.+++..+..+...|.+...++||+|+.+....+++.+..........+.....+...........-..+.-+..|
T Consensus 203 ~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 282 (598)
T 3qf4_B 203 KYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFALISGFG 282 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677778888899999999999999999998888888766554443322111111110111111111122334577
Q ss_pred hhHhhhhhhhhhhhhccccCCCCcc----cc------------ccCCCCCCCCCccccccccCCCCCCCCCCCCCeeEEE
Q 006571 89 AALSRASSASLGLSFSFTGFTMPPD----EI------------ADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKF 152 (640)
Q Consensus 89 ~~~~~~~~~~~g~~~~~~~~~~~~~----~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 152 (640)
+.++..+..+.|.++.+..+..... .+ +..+.....+.+++.+. +.....+.....|++
T Consensus 283 ~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~-----~~~~~~~~~~~~i~~ 357 (598)
T 3qf4_B 283 GWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKDD-----PDAVELREVRGEIEF 357 (598)
T ss_dssp HHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCC-----SSCCCCCSCCCCEEE
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC-----CCCCCCCCCCCeEEE
Confidence 7788788888888887765443211 11 11111111221111110 000011112346999
Q ss_pred EeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hcc
Q 006571 153 TDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLK 228 (640)
Q Consensus 153 ~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~~~ 228 (640)
+||+|+|+ +++++|+|+||+|++||++||+||||||||||+|+|+|.. + +.+|+|.+||+++.+ .+|
T Consensus 358 ~~v~~~y~-------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~-~-p~~G~i~~~g~~i~~~~~~~~r 428 (598)
T 3qf4_B 358 KNVWFSYD-------KKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFY-D-VDRGQILVDGIDIRKIKRSSLR 428 (598)
T ss_dssp EEEECCSS-------SSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSS-C-CSEEEEEETTEEGGGSCHHHHH
T ss_pred EEEEEECC-------CCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCc-C-CCCeEEEECCEEhhhCCHHHHH
Confidence 99999982 2457999999999999999999999999999999999854 3 468999999999853 467
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHH-----HHHHHHHcCCCccccccccCccCCcCCHHHHHH
Q 006571 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKR-----AIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (640)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (640)
+++|||+|++.+|+ .||+|||.++... .++++..+. .++.++ .+++..+|.+|.. ..+||||||||
T Consensus 429 ~~i~~v~Q~~~lf~-~tv~eni~~~~~~-----~~~~~~~~~~~~~~~~~~~~--~~~~g~~t~~~~~-g~~LSgGq~Qr 499 (598)
T 3qf4_B 429 SSIGIVLQDTILFS-TTVKENLKYGNPG-----ATDEEIKEAAKLTHSDHFIK--HLPEGYETVLTDN-GEDLSQGQRQL 499 (598)
T ss_dssp HHEEEECTTCCCCS-SBHHHHHHSSSTT-----CCTTHHHHHTTTTTCHHHHH--TSTTGGGCBCHHH-HTTSCHHHHHH
T ss_pred hceEEEeCCCcccc-ccHHHHHhcCCCC-----CCHHHHHHHHHHhCCHHHHH--hccccccchhcCC-CCCCCHHHHHH
Confidence 88999999999997 4999999986321 111111111 123333 3466778887643 46799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHH
Q 006571 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (640)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (640)
++|||||+++|+||+||||||+||+.++..+.+.|+++. +|+|+|+++|+++. + +.||+|++|++|++++.|+++|+
T Consensus 500 v~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-~-~~~d~i~~l~~G~i~~~g~~~~l 576 (598)
T 3qf4_B 500 LAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLNT-I-KNADLIIVLRDGEIVEMGKHDEL 576 (598)
T ss_dssp HHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTTH-H-HHCSEEEEECSSSEEECSCHHHH
T ss_pred HHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999999986 59999999999874 4 56999999999999999999998
Q ss_pred HH
Q 006571 384 MA 385 (640)
Q Consensus 384 ~~ 385 (640)
++
T Consensus 577 ~~ 578 (598)
T 3qf4_B 577 IQ 578 (598)
T ss_dssp HH
T ss_pred Hh
Confidence 74
No 28
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=1.1e-47 Score=398.53 Aligned_cols=221 Identities=22% Similarity=0.373 Sum_probs=185.0
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC--h
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--K 225 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~--~ 225 (640)
..|+++||+++| +++++|+||||+|++||+++|+||||||||||+|+|+|.+. +.+|+|.++|+++. .
T Consensus 20 ~~l~~~~l~~~y--------~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~~~~~ 89 (279)
T 2ihy_A 20 MLIQLDQIGRMK--------QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP--ATSGTVNLFGKMPGKVG 89 (279)
T ss_dssp EEEEEEEEEEEE--------TTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTBCCC---
T ss_pred ceEEEEeEEEEE--------CCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCeEEEECCEEccccc
Confidence 369999999998 34679999999999999999999999999999999999653 56899999999875 2
Q ss_pred ----hccCcEEEEccCCCC--CCCCCHHHHHHHHHhccCC-CCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCH
Q 006571 226 ----SLKSKIGFVTQDDVL--FPHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (640)
Q Consensus 226 ----~~~~~i~yV~Q~~~l--~~~lTV~Enl~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (640)
.++++||||+|++.+ .+.+||+||+.++...... .....++..++++++++.+||.+..+.. +.+|||
T Consensus 90 ~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSg 164 (279)
T 2ihy_A 90 YSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQY-----IGYLST 164 (279)
T ss_dssp CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSB-----GGGSCH
T ss_pred CCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCC-----hhhCCH
Confidence 356789999999764 2356999999986321000 0011233456788999999998776654 468999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEE--EEEeCCCCcHHHhccCEEEEEcCCeEEE
Q 006571 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTV--VTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (640)
Q Consensus 299 GqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~Tv--I~~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (640)
||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|| |++||++. ++.++||+|++|++|++++
T Consensus 165 GqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~-~~~~~~d~v~~l~~G~i~~ 243 (279)
T 2ihy_A 165 GEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIE-EITANFSKILLLKDGQSIQ 243 (279)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGG-GCCTTCCEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHH-HHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999997669999 99999975 4667899999999999999
Q ss_pred ecChHHHH
Q 006571 377 FGKASEAM 384 (640)
Q Consensus 377 ~G~~~~~~ 384 (640)
.|+++++.
T Consensus 244 ~g~~~~~~ 251 (279)
T 2ihy_A 244 QGAVEDIL 251 (279)
T ss_dssp EEEHHHHC
T ss_pred ECCHHHHh
Confidence 99998763
No 29
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=5.5e-47 Score=391.09 Aligned_cols=230 Identities=28% Similarity=0.351 Sum_probs=189.0
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (640)
..|+++||+++| +++++|+||||+|++||+++|+||||||||||+|+|+|....++.+|+|.++|+++..
T Consensus 19 ~~l~~~~l~~~y--------~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~ 90 (267)
T 2zu0_C 19 HMLSIKDLHVSV--------EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALS 90 (267)
T ss_dssp -CEEEEEEEEEE--------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSC
T ss_pred ceEEEEeEEEEE--------CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCC
Confidence 369999999998 3467999999999999999999999999999999999964223468999999998742
Q ss_pred --hc-cCcEEEEccCCCCCCCCCHHHHHHHHHh-c---cCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCccCC-cC
Q 006571 226 --SL-KSKIGFVTQDDVLFPHLTVKETLTYAAL-L---RLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVR-GV 296 (640)
Q Consensus 226 --~~-~~~i~yV~Q~~~l~~~lTV~Enl~~~~~-~---~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~-~L 296 (640)
.. ++.|+||+|++.+++.+||.||+.+... . ......+.++..++++++++.+||. +..+.. +. +|
T Consensus 91 ~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~~~L 165 (267)
T 2zu0_C 91 PEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRS-----VNVGF 165 (267)
T ss_dssp HHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSB-----TTTTC
T ss_pred HHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCC-----cccCC
Confidence 12 3459999999999999999999987542 1 1111123444566789999999996 445543 44 59
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhc-cCEEEEEcCCeEE
Q 006571 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHK-FDKLILLGKGSLL 375 (640)
Q Consensus 297 SGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~-~D~i~vL~~G~iv 375 (640)
||||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||++||++.. +... ||++++|++|+++
T Consensus 166 SgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~-~~~~~~d~v~~l~~G~i~ 244 (267)
T 2zu0_C 166 SGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRI-LDYIKPDYVHVLYQGRIV 244 (267)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGG-GGTSCCSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHH-HHhhcCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999987679999999999753 5455 8999999999999
Q ss_pred EecChHHHHHHHHhcCC
Q 006571 376 YFGKASEAMAYFSSIGC 392 (640)
Q Consensus 376 ~~G~~~~~~~~f~~~g~ 392 (640)
+.|+++++.. .+..|+
T Consensus 245 ~~g~~~~~~~-~~~~~~ 260 (267)
T 2zu0_C 245 KSGDFTLVKQ-LEEQGY 260 (267)
T ss_dssp EEECTTHHHH-HHTTTC
T ss_pred EEcCHHHHhh-hhhcch
Confidence 9999988753 344443
No 30
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.9e-49 Score=487.34 Aligned_cols=356 Identities=22% Similarity=0.281 Sum_probs=260.7
Q ss_pred hHhHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhch
Q 006571 8 TSLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSS 87 (640)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (640)
.+..++.++..++..+.++|.+++.++||+|+.+..+.++|.+...+....+.+.....+...........-..+..++.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (1321)
T 4f4c_A 261 STFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRYELERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYI 340 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566678888899999999999999999999999999999887766555433322222211111111111122334457
Q ss_pred hhhHhhhhhhhhhhhhccccCCC----Cc------------cccccCCCCCCCCCccccccccCCCCCCCCCCCCCeeEE
Q 006571 88 GAALSRASSASLGLSFSFTGFTM----PP------------DEIADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLK 151 (640)
Q Consensus 88 g~~~~~~~~~~~g~~~~~~~~~~----~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 151 (640)
|+.++..+..+.|.++++..+.. |. +..+..+.+...+.++.++...... .........|+
T Consensus 341 g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~---~~~~~~~g~I~ 417 (1321)
T 4f4c_A 341 GVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDRKPVIDSSSKAG---RKDMKIKGDIT 417 (1321)
T ss_dssp HHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCSSCSSSCC---CCCCCCCCCEE
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccc---ccCCCCCCcEE
Confidence 77788778777777766543221 11 1112222222222222222211110 01112234699
Q ss_pred EEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hc
Q 006571 152 FTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SL 227 (640)
Q Consensus 152 ~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~~ 227 (640)
|+||+|+|+ ..+++++|+|+||+|++|+.+||+||||||||||+++|.| +++ +.+|+|.+||.|+++ .+
T Consensus 418 ~~nvsF~Y~-----~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~-~~~-~~~G~I~idG~~i~~~~~~~l 490 (1321)
T 4f4c_A 418 VENVHFTYP-----SRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLR-YYD-VLKGKITIDGVDVRDINLEFL 490 (1321)
T ss_dssp EEEEEECCS-----SSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTT-SSC-CSEEEEEETTEETTTSCHHHH
T ss_pred EEEeeeeCC-----CCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhcc-ccc-cccCcccCCCccchhccHHHH
Confidence 999999984 2346789999999999999999999999999999999997 454 458999999999863 57
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHH-----HHHHHHHcCCCccccccccCccCCcCCHHHHH
Q 006571 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKR-----AIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (640)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (640)
|++||||+|++.+|.. ||+|||.|+.. ..++++..+. +++.++ .|+++.||.||++. ..|||||||
T Consensus 491 r~~i~~v~Q~~~Lf~~-TI~eNI~~g~~-----~~~~~~v~~a~~~a~l~~~i~--~lp~G~~T~vGe~G-~~LSGGQkQ 561 (1321)
T 4f4c_A 491 RKNVAVVSQEPALFNC-TIEENISLGKE-----GITREEMVAACKMANAEKFIK--TLPNGYNTLVGDRG-TQLSGGQKQ 561 (1321)
T ss_dssp HHHEEEECSSCCCCSE-EHHHHHHTTCT-----TCCHHHHHHHHHHTTCHHHHH--HSTTTTSSEESSSS-CCCCHHHHH
T ss_pred hhcccccCCcceeeCC-chhHHHhhhcc-----cchHHHHHHHHHHccchhHHH--cCCCCCccEecCCC-CCCCHHHHH
Confidence 8899999999999975 99999998732 2233332222 233344 35889999999765 569999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHH
Q 006571 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (640)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (640)
|++|||||++||+|||||||||+||+.++..+.+.|+++.+ |+|+|+++|+++. .+.||+|++|++|+|++.|+|+|
T Consensus 562 RiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~-~~T~iiiaHrls~--i~~aD~Iivl~~G~ive~Gth~e 638 (1321)
T 4f4c_A 562 RIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAK-GRTTIIIAHRLST--IRNADLIISCKNGQVVEVGDHRA 638 (1321)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHT-TSEEEEECSCTTT--TTTCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhC-CCEEEEEcccHHH--HHhCCEEEEeeCCeeeccCCHHH
Confidence 99999999999999999999999999999999999999875 8999999999885 58899999999999999999999
Q ss_pred HHH
Q 006571 383 AMA 385 (640)
Q Consensus 383 ~~~ 385 (640)
+++
T Consensus 639 L~~ 641 (1321)
T 4f4c_A 639 LMA 641 (1321)
T ss_dssp HHT
T ss_pred HHH
Confidence 974
No 31
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=2.1e-49 Score=451.12 Aligned_cols=350 Identities=20% Similarity=0.266 Sum_probs=245.2
Q ss_pred HhHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchh
Q 006571 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSG 88 (640)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 88 (640)
+..++.++...+..+...|.+...++||+|+.+....+++.+..........+.....+...........-..+.-++.|
T Consensus 191 ~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 270 (582)
T 3b60_A 191 SISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASLALAFVLYAA 270 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677778888899999999999999999999988888776655444332111111110001111111112223455
Q ss_pred hhHhhhhhhhhhhhhccccCCC----Ccccc------------ccCCCCCCCCCccccccccCCCCCCCCCCCCCeeEEE
Q 006571 89 AALSRASSASLGLSFSFTGFTM----PPDEI------------ADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKF 152 (640)
Q Consensus 89 ~~~~~~~~~~~g~~~~~~~~~~----~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 152 (640)
+.++..|..+.|.++.+..+.. |...+ +..+.... ++..+...+.....+.....|++
T Consensus 271 ~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~------l~~~~~~~~~~~~~~~~~~~i~~ 344 (582)
T 3b60_A 271 SFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAI------LDSEQEKDEGKRVIDRATGDLEF 344 (582)
T ss_dssp HSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHSCCSCCCCCBCCSCCCCCEEE
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HcCCCCccCCCCCCCCCCCcEEE
Confidence 5555556666666665543221 11111 11111111 11110000000011112246999
Q ss_pred EeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hcc
Q 006571 153 TDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLK 228 (640)
Q Consensus 153 ~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~~~ 228 (640)
+||+|+|+ .+++++|+|+|++|++||++||+||||||||||+|+|+|.. + +.+|+|.+||+++.+ .+|
T Consensus 345 ~~v~~~y~------~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~-~-p~~G~i~~~g~~~~~~~~~~~~ 416 (582)
T 3b60_A 345 RNVTFTYP------GREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFY-D-IDEGHILMDGHDLREYTLASLR 416 (582)
T ss_dssp EEEEECSS------SSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTT-C-CSEEEEEETTEETTTBCHHHHH
T ss_pred EEEEEEcC------CCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcc-C-CCCCeEEECCEEccccCHHHHH
Confidence 99999982 11267999999999999999999999999999999999854 3 468999999999853 457
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCC-------CccccccccCccCCcCCHHHH
Q 006571 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-------ERCQDTMIGGSFVRGVSGGER 301 (640)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~t~vg~~~~~~LSGGqr 301 (640)
++++||+|++.+|+. ||+|||.++.. + ..++ ++++++++.+++ +++.||.+|.. ..+||||||
T Consensus 417 ~~i~~v~Q~~~l~~~-tv~eni~~~~~---~-~~~~----~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~-~~~LSgGq~ 486 (582)
T 3b60_A 417 NQVALVSQNVHLFND-TVANNIAYART---E-EYSR----EQIEEAARMAYAMDFINKMDNGLDTIIGEN-GVLLSGGQR 486 (582)
T ss_dssp HTEEEECSSCCCCSS-BHHHHHHTTTT---S-CCCH----HHHHHHHHTTTCHHHHHHSTTGGGSBCCTT-SCSSCHHHH
T ss_pred hhCeEEccCCcCCCC-CHHHHHhccCC---C-CCCH----HHHHHHHHHcCCHHHHHhccccccccccCC-CCCCCHHHH
Confidence 789999999999975 99999998631 1 1222 334555555554 44677887754 578999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChH
Q 006571 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (640)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (640)
||++|||||+++|++|+||||||+||+.++..+.+.|+++.+ |+|+|+++|+++. + +.||+|++|++|++++.|+++
T Consensus 487 qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~-~-~~~d~i~~l~~G~i~~~g~~~ 563 (582)
T 3b60_A 487 QRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLST-I-EQADEIVVVEDGIIVERGTHS 563 (582)
T ss_dssp HHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGG-T-TTCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHHH-H-HhCCEEEEEECCEEEEecCHH
Confidence 999999999999999999999999999999999999999875 9999999999864 3 579999999999999999999
Q ss_pred HHHH
Q 006571 382 EAMA 385 (640)
Q Consensus 382 ~~~~ 385 (640)
++.+
T Consensus 564 ~l~~ 567 (582)
T 3b60_A 564 ELLA 567 (582)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9864
No 32
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=9.9e-49 Score=446.62 Aligned_cols=355 Identities=24% Similarity=0.325 Sum_probs=246.9
Q ss_pred HhHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchh
Q 006571 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSG 88 (640)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 88 (640)
+..++.++...+..+...|.+...++||+|+.+..+.+++.+..........+.....+...........-..+.-++.|
T Consensus 188 ~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 267 (595)
T 2yl4_A 188 KLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGATGLSGNLIVLSVLYKG 267 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555677778888899999999999999999999988888777655444322111111110000111111122234567
Q ss_pred hhHhhhhhhhhhhhhccccCCC----Cccc------------cccCCCCCCCCCccccccccCCCCCCCCCCCCCee-EE
Q 006571 89 AALSRASSASLGLSFSFTGFTM----PPDE------------IADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIY-LK 151 (640)
Q Consensus 89 ~~~~~~~~~~~g~~~~~~~~~~----~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~ 151 (640)
+.++..|..+.|.+..+..+.. |... .+..+.+...+.++..+... .....+..... |+
T Consensus 268 ~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~----~~~~~~~~~~~~i~ 343 (595)
T 2yl4_A 268 GLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREPKLPFNE----GVILNEKSFQGALE 343 (595)
T ss_dssp HHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCSSC----SBCCCTTTCCCCEE
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCC----CCCCCcCCCCCeEE
Confidence 7777777777777666554321 1111 11111111111111111000 00000111235 99
Q ss_pred EEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hc
Q 006571 152 FTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SL 227 (640)
Q Consensus 152 ~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~~ 227 (640)
++||+|+|+. .+++++|+|+||++++||++||+||||||||||+|+|+|.. + +.+|+|.+||+++.+ .+
T Consensus 344 ~~~v~~~y~~-----~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~-~-p~~G~i~~~g~~i~~~~~~~~ 416 (595)
T 2yl4_A 344 FKNVHFAYPA-----RPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLY-D-PASGTISLDGHDIRQLNPVWL 416 (595)
T ss_dssp EEEEEEECSS-----CTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSS-C-CSEEEEEETTEETTTBCHHHH
T ss_pred EEEEEEEeCC-----CCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc-C-CCCcEEEECCEEhhhCCHHHH
Confidence 9999999821 11357999999999999999999999999999999999854 3 468999999999853 45
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCC-------CccccccccCccCCcCCHHH
Q 006571 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-------ERCQDTMIGGSFVRGVSGGE 300 (640)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~t~vg~~~~~~LSGGq 300 (640)
|++|+||+|++.+|+. ||+|||.++.... ...+ +++++++++.+++ ++..|+.+|.. ..+|||||
T Consensus 417 ~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~--~~~~----~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~-~~~LSgGq 488 (595)
T 2yl4_A 417 RSKIGTVSQEPILFSC-SIAENIAYGADDP--SSVT----AEEIQRVAEVANAVAFIRNFPQGFNTVVGEK-GVLLSGGQ 488 (595)
T ss_dssp HHSEEEECSSCCCCSS-BHHHHHHTTSSST--TTSC----HHHHHHHHHHTTCHHHHHTSSSGGGCBCSSS-SCCCCHHH
T ss_pred HhceEEEccCCcccCC-CHHHHHhhcCCCc--cccC----HHHHHHHHHHcCCHHHHHhCcccccccccCC-CCcCCHHH
Confidence 7789999999999974 9999999864210 0122 2345566666654 55678888754 57799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecCh
Q 006571 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (640)
Q Consensus 301 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (640)
|||++|||||+++|+||+|||||++||+.++..+.+.|+++.+ |+|+|+++|+++. + +.||+|++|++|++++.|++
T Consensus 489 ~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~-~-~~~d~i~~l~~G~i~~~g~~ 565 (595)
T 2yl4_A 489 KQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHRLST-I-KNANMVAVLDQGKITEYGKH 565 (595)
T ss_dssp HHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT-TSEEEEECCCHHH-H-HHSSEEEEEETTEEEEEECS
T ss_pred HHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHH-H-HcCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999999876 8999999999753 4 56999999999999999999
Q ss_pred HHHHH
Q 006571 381 SEAMA 385 (640)
Q Consensus 381 ~~~~~ 385 (640)
+++++
T Consensus 566 ~~l~~ 570 (595)
T 2yl4_A 566 EELLS 570 (595)
T ss_dssp CC---
T ss_pred HHHHh
Confidence 98753
No 33
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=7.9e-47 Score=385.65 Aligned_cols=215 Identities=28% Similarity=0.512 Sum_probs=179.8
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (640)
..++++||+++|. .+++++|+||||+|++||+++|+||||||||||+|+|+|.+. +.+|+|.++|+++..
T Consensus 6 ~~~~~~~l~~~y~------~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~i~g~~~~~~~ 77 (247)
T 2ff7_A 6 HDITFRNIRFRYK------PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI--PENGQVLIDGHDLALAD 77 (247)
T ss_dssp EEEEEEEEEEESS------TTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEETTTSC
T ss_pred CceeEEEEEEEeC------CCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEhhhCC
Confidence 3699999999972 124579999999999999999999999999999999999653 468999999999753
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCcccc-------ccccCccCCcC
Q 006571 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD-------TMIGGSFVRGV 296 (640)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-------t~vg~~~~~~L 296 (640)
.+++.||||+|++.+|+ .||+||+.++.. ... .+++.++++.+++.+..+ +.++ ..+..|
T Consensus 78 ~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~-~~~~~L 146 (247)
T 2ff7_A 78 PNWLRRQVGVVLQDNVLLN-RSIIDNISLANP-----GMS----VEKVIYAAKLAGAHDFISELREGYNTIVG-EQGAGL 146 (247)
T ss_dssp HHHHHHHEEEECSSCCCTT-SBHHHHHTTTCT-----TCC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCS-TTTTCC
T ss_pred HHHHHhcEEEEeCCCcccc-ccHHHHHhccCC-----CCC----HHHHHHHHHHhChHHHHHhCcchhhhhhh-CCCCCC
Confidence 35678999999999987 599999987521 112 234556677777755433 3332 345789
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEE
Q 006571 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (640)
Q Consensus 297 SGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (640)
||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++. +|+|||++||++.. + ..||+|++|++|++++
T Consensus 147 SgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~~-~-~~~d~v~~l~~G~i~~ 223 (247)
T 2ff7_A 147 SGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLST-V-KNADRIIVMEKGKIVE 223 (247)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGGG-G-TTSSEEEEEETTEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHH-H-HhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999995 59999999999763 4 5699999999999999
Q ss_pred ecChHHHH
Q 006571 377 FGKASEAM 384 (640)
Q Consensus 377 ~G~~~~~~ 384 (640)
.|+++++.
T Consensus 224 ~g~~~~l~ 231 (247)
T 2ff7_A 224 QGKHKELL 231 (247)
T ss_dssp EECHHHHH
T ss_pred ECCHHHHH
Confidence 99999875
No 34
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=3.4e-47 Score=393.48 Aligned_cols=223 Identities=30% Similarity=0.469 Sum_probs=180.5
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (640)
..|+++||+++|.. .+++++|+||||+|++||+++|+||||||||||+|+|+|.+. +.+|+|.++|+++..
T Consensus 15 ~~l~~~~l~~~y~~-----~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~i~~~~ 87 (271)
T 2ixe_A 15 GLVKFQDVSFAYPN-----HPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ--PTGGKVLLDGEPLVQYD 87 (271)
T ss_dssp CCEEEEEEEECCTT-----CTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEGGGBC
T ss_pred ceEEEEEEEEEeCC-----CCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECCEEcccCC
Confidence 36999999998821 012679999999999999999999999999999999999653 468999999998742
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCC-CCccHHHHHHHHHHHHHHc--CCCccccccccCccCCcCCHHH
Q 006571 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINEL--GLERCQDTMIGGSFVRGVSGGE 300 (640)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~-~~~~~~~~~~~v~~~l~~l--gL~~~~~t~vg~~~~~~LSGGq 300 (640)
.++++|+||+|++.+|+ .||+|||.++...... ...........+.++++.+ ||.+..+. .+.+|||||
T Consensus 88 ~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~-----~~~~LSgGq 161 (271)
T 2ixe_A 88 HHYLHTQVAAVGQEPLLFG-RSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGE-----TGNQLSGGQ 161 (271)
T ss_dssp HHHHHHHEEEECSSCCCCS-SBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCG-----GGTTSCHHH
T ss_pred HHHHhccEEEEecCCcccc-ccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcC-----CcCCCCHHH
Confidence 34677999999999997 5999999986421100 0000111223456777777 56544443 457899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecC
Q 006571 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (640)
Q Consensus 301 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (640)
||||+|||||+.+|+||||||||+|||+.++..+++.|+++++ .|+|||++||++.. + ..||+|++|++|++++.|+
T Consensus 162 ~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~-~-~~~d~v~~l~~G~i~~~g~ 239 (271)
T 2ixe_A 162 RQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSL-A-ERAHHILFLKEGSVCEQGT 239 (271)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHH-H-TTCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHH-H-HhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999999864 48999999999753 4 4599999999999999999
Q ss_pred hHHHHH
Q 006571 380 ASEAMA 385 (640)
Q Consensus 380 ~~~~~~ 385 (640)
++++..
T Consensus 240 ~~~l~~ 245 (271)
T 2ixe_A 240 HLQLME 245 (271)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998864
No 35
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=2.5e-49 Score=486.16 Aligned_cols=353 Identities=23% Similarity=0.311 Sum_probs=242.1
Q ss_pred HHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchhhhH
Q 006571 12 RTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGAAL 91 (640)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 91 (640)
.+.++..+.....+.|++...+|||+|+.+....+++.+.+........+.....+...........-+.+..++.|..+
T Consensus 925 ~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l 1004 (1321)
T 4f4c_A 925 VKSASEFADSGKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLAL 1004 (1321)
T ss_dssp TTTSSHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 34456677788888899999999999999998888888877654443222111111110111111111122223345554
Q ss_pred hhhhhhhhhhh------hccccCCCCcccc------------ccCCCCCCCCCccccccccCCCCCCCCCCCCCeeEEEE
Q 006571 92 SRASSASLGLS------FSFTGFTMPPDEI------------ADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFT 153 (640)
Q Consensus 92 ~~~~~~~~g~~------~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 153 (640)
+..+..+.+.. ..+.....+...+ +..+.+...+..++.+... .....+.....|+|+
T Consensus 1005 v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~----~~~~~~~~~g~I~f~ 1080 (1321)
T 4f4c_A 1005 IITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGMLRKISKIDSLS----LAGEKKKLYGKVIFK 1080 (1321)
T ss_dssp TSSSSCSSCHHHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHHHHHHHHHHHHCCCSSCTTC----CCSBCCCCCCCEEEE
T ss_pred HhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCCcc----CCCCCCCCCCeEEEE
Confidence 44333222211 0111111111111 1111111111111111110 000111223469999
Q ss_pred eEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hccC
Q 006571 154 DVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKS 229 (640)
Q Consensus 154 ~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~ 229 (640)
||+|+|+ .+++.+||+||||+|+|||.+||+||||||||||+++|.| +++| .+|+|.+||.|+++ .+|+
T Consensus 1081 nVsf~Y~-----~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~r-l~~p-~~G~I~iDG~di~~i~~~~lR~ 1153 (1321)
T 4f4c_A 1081 NVRFAYP-----ERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLER-FYDT-LGGEIFIDGSEIKTLNPEHTRS 1153 (1321)
T ss_dssp EEEECCT-----TSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTT-SSCC-SSSEEEETTEETTTBCHHHHHT
T ss_pred EEEEeCC-----CCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhc-CccC-CCCEEEECCEEhhhCCHHHHHh
Confidence 9999983 2345689999999999999999999999999999999996 5654 58999999999863 6899
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHH-----HHHHHHHcCCCccccccccCccCCcCCHHHHHHH
Q 006571 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKR-----AIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (640)
Q Consensus 230 ~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (640)
+|+||||||.+|+. ||+|||.|+.. |...++++..+. +++.++ .|+++.||.+|+.. ..||||||||+
T Consensus 1154 ~i~~V~Qdp~LF~g-TIreNI~~gld---~~~~sd~ei~~Al~~a~l~~~I~--~Lp~GldT~vge~G-~~LSgGQrQri 1226 (1321)
T 4f4c_A 1154 QIAIVSQEPTLFDC-SIAENIIYGLD---PSSVTMAQVEEAARLANIHNFIA--ELPEGFETRVGDRG-TQLSGGQKQRI 1226 (1321)
T ss_dssp TEEEECSSCCCCSE-EHHHHHSSSSC---TTTSCHHHHHHHHHHTTCHHHHH--TSTTTTCSEETTTS-CSSCHHHHHHH
T ss_pred heEEECCCCEeeCc-cHHHHHhccCC---CCCCCHHHHHHHHHHhCChHHHH--cCcCCCCCEecCCC-cccCHHHHHHH
Confidence 99999999999975 99999998742 223444332222 223332 46888999998654 56999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHH
Q 006571 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (640)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (640)
+|||||+++|+|||||||||+||++++..|.+.|+++. +|+|+|+|+|++++ ...||+|+||++|+|+++|+|+|++
T Consensus 1227 aiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLsT--i~~aD~I~Vld~G~IvE~Gth~eLl 1303 (1321)
T 4f4c_A 1227 AIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLNT--VMNADCIAVVSNGTIIEKGTHTQLM 1303 (1321)
T ss_dssp HHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSST--TTTCSEEEEESSSSEEEEECHHHHH
T ss_pred HHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHHH--HHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999999999998865 48999999999986 4779999999999999999999998
Q ss_pred H
Q 006571 385 A 385 (640)
Q Consensus 385 ~ 385 (640)
+
T Consensus 1304 ~ 1304 (1321)
T 4f4c_A 1304 S 1304 (1321)
T ss_dssp H
T ss_pred h
Confidence 5
No 36
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=3.8e-46 Score=381.88 Aligned_cols=210 Identities=28% Similarity=0.417 Sum_probs=180.9
Q ss_pred eEEEEeEEEEEeeccccccc-cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhc
Q 006571 149 YLKFTDVTYKVILKGMTSSE-EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (640)
+|+++||+++| + ++++|+|+||+|++||+++|+||||||||||+|+|+|.+. +.+|+|. .
T Consensus 4 ~l~i~~l~~~y--------~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~---------~ 64 (253)
T 2nq2_C 4 ALSVENLGFYY--------QAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR--PIQGKIE---------V 64 (253)
T ss_dssp EEEEEEEEEEE--------TTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSC--CSEEEEE---------E
T ss_pred eEEEeeEEEEe--------CCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEE---------E
Confidence 59999999998 3 4679999999999999999999999999999999999653 5689998 3
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhccCC-CCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHH
Q 006571 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (640)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (640)
++.||||+|++.+++.+||+||+.++...... ......+.+++++++++.+||.+..+.. +.+|||||||||+|
T Consensus 65 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~qrv~l 139 (253)
T 2nq2_C 65 YQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKRE-----FTSLSGGQRQLILI 139 (253)
T ss_dssp CSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSB-----GGGSCHHHHHHHHH
T ss_pred eccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCC-----hhhCCHHHHHHHHH
Confidence 56799999999999899999999987532110 0011233456788999999998776654 56899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHH
Q 006571 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (640)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (640)
||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||++. .+.++||++++|++|+ ++.|+++++.
T Consensus 140 AraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~-~~~g~~~~~~ 216 (253)
T 2nq2_C 140 ARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN-QVVAIANKTLLLNKQN-FKFGETRNIL 216 (253)
T ss_dssp HHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHH-HHHHHCSEEEEEETTE-EEEEEHHHHC
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeCCe-EecCCHHHHh
Confidence 99999999999999999999999999999999999876 999999999965 4668899999999999 9999988863
No 37
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=1.1e-46 Score=383.59 Aligned_cols=215 Identities=30% Similarity=0.487 Sum_probs=181.3
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (640)
|+++||+++|. +++++|+||||+|++||+++|+||||||||||+|+|+|.+. +.+|+|.++|+++..
T Consensus 2 l~~~~l~~~y~-------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~ 72 (243)
T 1mv5_A 2 LSARHVDFAYD-------DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ--PTAGEITIDGQPIDNISLE 72 (243)
T ss_dssp EEEEEEEECSS-------SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC--CSBSCEEETTEESTTTSCS
T ss_pred EEEEEEEEEeC-------CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEhhhCCHH
Confidence 78999999871 24579999999999999999999999999999999999653 468999999998742
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccc------cCccCCcCCHH
Q 006571 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMI------GGSFVRGVSGG 299 (640)
Q Consensus 226 ~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~v------g~~~~~~LSGG 299 (640)
.++++|+||+|++.+|+ .||+||+.++.. + ... .+++.++++.+++.+..+... -+..+..||||
T Consensus 73 ~~~~~i~~v~q~~~l~~-~tv~enl~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgG 143 (243)
T 1mv5_A 73 NWRSQIGFVSQDSAIMA-GTIRENLTYGLE---G-DYT----DEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGG 143 (243)
T ss_dssp CCTTTCCEECCSSCCCC-EEHHHHTTSCTT---S-CSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHH
T ss_pred HHHhhEEEEcCCCcccc-ccHHHHHhhhcc---C-CCC----HHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHH
Confidence 35678999999999997 599999987521 1 112 234677888888876554321 12346789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecC
Q 006571 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (640)
Q Consensus 300 qrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (640)
|||||+|||||+.+|++|||||||+|||+.++..+++.|+++. +|+|||++||++. .+ ..||+|++|++|++++.|+
T Consensus 144 q~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~-~~-~~~d~v~~l~~G~i~~~g~ 220 (243)
T 1mv5_A 144 QRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS-TI-VDADKIYFIEKGQITGSGK 220 (243)
T ss_dssp HHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH-HH-HHCSEEEEEETTEECCCSC
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChH-HH-HhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999999997 5999999999975 34 5699999999999999999
Q ss_pred hHHHHH
Q 006571 380 ASEAMA 385 (640)
Q Consensus 380 ~~~~~~ 385 (640)
++++..
T Consensus 221 ~~~~~~ 226 (243)
T 1mv5_A 221 HNELVA 226 (243)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998754
No 38
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=6.9e-46 Score=379.03 Aligned_cols=207 Identities=27% Similarity=0.411 Sum_probs=181.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
+|+++||+++ ++|+|+||+|++||+++|+||||||||||+|+|+|.+. +. |+|.++|+++..
T Consensus 4 ~l~~~~l~~~------------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--p~-G~i~~~g~~~~~~~~ 68 (249)
T 2qi9_C 4 VMQLQDVAES------------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS--GK-GSIQFAGQPLEAWSA 68 (249)
T ss_dssp EEEEEEEEET------------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CE-EEEEETTEEGGGSCH
T ss_pred EEEEEceEEE------------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CC-eEEEECCEECCcCCH
Confidence 5899999862 59999999999999999999999999999999999653 56 999999998742
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHH
Q 006571 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (640)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (640)
.++++++||+|++.+++.+||+||+.++.. +. .. +++++++++.+||.+..+.. +..|||||||||
T Consensus 69 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~---~~-~~----~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~qrv 135 (249)
T 2qi9_C 69 TKLALHRAYLSQQQTPPFATPVWHYLTLHQH---DK-TR----TELLNDVAGALALDDKLGRS-----TNQLSGGEWQRV 135 (249)
T ss_dssp HHHHHHEEEECSCCCCCTTCBHHHHHHTTCS---ST-TC----HHHHHHHHHHTTCGGGTTSB-----GGGCCHHHHHHH
T ss_pred HHHhceEEEECCCCccCCCCcHHHHHHHhhc---cC-Cc----HHHHHHHHHHcCChhHhcCC-----hhhCCHHHHHHH
Confidence 346779999999999999999999997521 11 11 45678899999998776653 568999999999
Q ss_pred HHHHHHhhCCC-------EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEe
Q 006571 305 CIGNEIIINPS-------LLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (640)
Q Consensus 305 ~IA~aL~~~P~-------iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (640)
+|||||+.+|+ +|||||||+|||+.++..+.+.|++++++|+|||++||++. .+..+||++++|++|++++.
T Consensus 136 ~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~d~v~~l~~G~i~~~ 214 (249)
T 2qi9_C 136 RLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLN-HTLRHAHRAWLLKGGKMLAS 214 (249)
T ss_dssp HHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEETTEEEEE
T ss_pred HHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEe
Confidence 99999999999 99999999999999999999999999877999999999965 46688999999999999999
Q ss_pred cChHHHH
Q 006571 378 GKASEAM 384 (640)
Q Consensus 378 G~~~~~~ 384 (640)
|+++++.
T Consensus 215 g~~~~~~ 221 (249)
T 2qi9_C 215 GRREEVL 221 (249)
T ss_dssp EEHHHHS
T ss_pred CCHHHHh
Confidence 9998863
No 39
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=1.6e-45 Score=378.67 Aligned_cols=215 Identities=30% Similarity=0.480 Sum_probs=178.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++||+++|.. ...+++|+||||+|++||+++|+||||||||||+|+|+|.+. + +|+|.++|+++..
T Consensus 17 ~l~i~~l~~~y~~-----~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~-~G~I~i~g~~i~~~~~ 88 (260)
T 2ghi_A 17 NIEFSDVNFSYPK-----QTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD--A-EGDIKIGGKNVNKYNR 88 (260)
T ss_dssp CEEEEEEEECCTT-----CCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--C-EEEEEETTEEGGGBCH
T ss_pred eEEEEEEEEEeCC-----CCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC--C-CeEEEECCEEhhhcCH
Confidence 5999999999821 112579999999999999999999999999999999999653 4 7999999998742
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCC-------CccccccccCccCCcCC
Q 006571 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-------ERCQDTMIGGSFVRGVS 297 (640)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~t~vg~~~~~~LS 297 (640)
.+++.|+||+|++.+|+ .||+||+.++.. .... +++.++++.+++ ++..++.++ ..+..||
T Consensus 89 ~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~~----~~~~~~l~~~~l~~~~~~l~~~~~~~~~-~~~~~LS 157 (260)
T 2ghi_A 89 NSIRSIIGIVPQDTILFN-ETIKYNILYGKL-----DATD----EEVIKATKSAQLYDFIEALPKKWDTIVG-NKGMKLS 157 (260)
T ss_dssp HHHHTTEEEECSSCCCCS-EEHHHHHHTTCT-----TCCH----HHHHHHHHHTTCHHHHHTSTTGGGCEES-SSSBCCC
T ss_pred HHHhccEEEEcCCCcccc-cCHHHHHhccCC-----CCCH----HHHHHHHHHhCCHHHHHhcccccccccc-CCcCcCC
Confidence 35678999999999996 599999998521 1122 234455555554 444555554 3467899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEe
Q 006571 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (640)
Q Consensus 298 GGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (640)
|||||||+|||||+.+|+||||||||+|||+.++..+++.|+++.+ |+|||++||++.. + ..||+|++|++|++++.
T Consensus 158 gGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~~-~-~~~d~i~~l~~G~i~~~ 234 (260)
T 2ghi_A 158 GGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLST-I-SSAESIILLNKGKIVEK 234 (260)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGGG-S-TTCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHH-H-HhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999864 8999999999764 4 56999999999999999
Q ss_pred cChHHHHH
Q 006571 378 GKASEAMA 385 (640)
Q Consensus 378 G~~~~~~~ 385 (640)
|+++++..
T Consensus 235 g~~~~l~~ 242 (260)
T 2ghi_A 235 GTHKDLLK 242 (260)
T ss_dssp ECHHHHHH
T ss_pred CCHHHHHh
Confidence 99998864
No 40
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=5.3e-47 Score=464.54 Aligned_cols=356 Identities=23% Similarity=0.298 Sum_probs=255.9
Q ss_pred hHhHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhch
Q 006571 8 TSLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSS 87 (640)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (640)
.+..++.++..++..+.++|+++..+|||+|+.+..+.++|.+........+.+.....+.+............+..++.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (1284)
T 3g5u_A 233 SSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWY 312 (1284)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCSHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778888999999999999999999999999999999988776655544332222222111111112223344567
Q ss_pred hhhHhhhhhhhhhhhhccccCC----CC------------ccccccCCCCCCCCCccccccccCCCCCCCCCCCCCeeEE
Q 006571 88 GAALSRASSASLGLSFSFTGFT----MP------------PDEIADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLK 151 (640)
Q Consensus 88 g~~~~~~~~~~~g~~~~~~~~~----~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 151 (640)
|+.++..+..+.|.++++..+. .| .+..+..+.+...+.++..+..... ....+.....|+
T Consensus 313 g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~---~~~~~~~~g~i~ 389 (1284)
T 3g5u_A 313 GTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKS---GHKPDNIQGNLE 389 (1284)
T ss_dssp HHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCSSCCSS---CCCCTTCCCCEE
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCccccc---CCCCCCCCCeEE
Confidence 8888877777766655422111 01 1111111222222222211110000 001111234699
Q ss_pred EEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hc
Q 006571 152 FTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SL 227 (640)
Q Consensus 152 ~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~~ 227 (640)
++||+|+|+. ++++++|+||||+|++||++||+||||||||||+++|+|. ++ +.+|+|.+||+++.. .+
T Consensus 390 ~~~v~~~y~~-----~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~-~~-~~~G~i~i~g~~i~~~~~~~~ 462 (1284)
T 3g5u_A 390 FKNIHFSYPS-----RKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRL-YD-PLDGMVSIDGQDIRTINVRYL 462 (1284)
T ss_dssp EEEEEECCSS-----TTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTS-SC-CSEEEEEETTEEGGGSCHHHH
T ss_pred EEEEEEEcCC-----CCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CC-CCCeEEEECCEEHHhCCHHHH
Confidence 9999999831 2345799999999999999999999999999999999985 44 468999999999853 56
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHH-----HHHHHHHcCCCccccccccCccCCcCCHHHHH
Q 006571 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKR-----AIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (640)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (640)
|++||||+|++.+|+. ||+|||.++.. ..+.++..+. +++.++. +++..||.+|.. ..+|||||||
T Consensus 463 r~~i~~v~Q~~~l~~~-ti~eNi~~g~~-----~~~~~~~~~~~~~~~~~~~i~~--l~~g~~t~~~~~-g~~LSgGq~Q 533 (1284)
T 3g5u_A 463 REIIGVVSQEPVLFAT-TIAENIRYGRE-----DVTMDEIEKAVKEANAYDFIMK--LPHQFDTLVGER-GAQLSGGQKQ 533 (1284)
T ss_dssp HHHEEEECSSCCCCSS-CHHHHHHHHCS-----SCCHHHHHHHHHHTTCHHHHHH--STTGGGCCCSSS-SCSSCHHHHH
T ss_pred HhheEEEcCCCccCCc-cHHHHHhcCCC-----CCCHHHHHHHHHHhCcHHHHHh--ccccccccccCC-CCccCHHHHH
Confidence 7889999999999976 99999999742 1223322222 2344443 467789988754 4679999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHH
Q 006571 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (640)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (640)
||+|||||+++|+|||||||||+||+.++..+.+.++++. +|+|+|+++|+++. + ..||+|++|++|++++.|++++
T Consensus 534 riaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-i-~~~d~i~vl~~G~i~~~g~~~~ 610 (1284)
T 3g5u_A 534 RIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR-EGRTTIVIAHRLST-V-RNADVIAGFDGGVIVEQGNHDE 610 (1284)
T ss_dssp HHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH-TTSEEEEECSCHHH-H-TTCSEEEECSSSCCCCEECHHH
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999999998875 49999999999764 4 5699999999999999999999
Q ss_pred HHH
Q 006571 383 AMA 385 (640)
Q Consensus 383 ~~~ 385 (640)
+++
T Consensus 611 l~~ 613 (1284)
T 3g5u_A 611 LMR 613 (1284)
T ss_dssp HHH
T ss_pred HHh
Confidence 875
No 41
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=1e-45 Score=369.52 Aligned_cols=202 Identities=22% Similarity=0.384 Sum_probs=172.4
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhc
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (640)
..|+++||+++| ++ ++|+||||+|++||+++|+||||||||||+|+|+|.+. +.+|+|.++|+++. ..
T Consensus 9 ~~l~~~~ls~~y--------~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~~-~~ 76 (214)
T 1sgw_A 9 SKLEIRDLSVGY--------DK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPIT-KV 76 (214)
T ss_dssp CEEEEEEEEEES--------SS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEGG-GG
T ss_pred ceEEEEEEEEEe--------CC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEhh-hh
Confidence 479999999997 34 79999999999999999999999999999999999653 56899999999876 46
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHH
Q 006571 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (640)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (640)
++.|+||+|++.+++.+||+||+.++...+. .. .+ +++++++++.+||.+. +. .+.+|||||||||+||
T Consensus 77 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~---~~-~~-~~~~~~~l~~~gl~~~-~~-----~~~~LSgGqkqrv~la 145 (214)
T 1sgw_A 77 KGKIFFLPEEIIVPRKISVEDYLKAVASLYG---VK-VN-KNEIMDALESVEVLDL-KK-----KLGELSQGTIRRVQLA 145 (214)
T ss_dssp GGGEEEECSSCCCCTTSBHHHHHHHHHHHTT---CC-CC-HHHHHHHHHHTTCCCT-TS-----BGGGSCHHHHHHHHHH
T ss_pred cCcEEEEeCCCcCCCCCCHHHHHHHHHHhcC---Cc-hH-HHHHHHHHHHcCCCcC-CC-----ChhhCCHHHHHHHHHH
Confidence 7789999999999999999999998764321 11 11 4567889999999765 54 4578999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeE
Q 006571 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (640)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~i 374 (640)
|||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++.. +..+||+|+++ .|+|
T Consensus 146 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~-~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 146 STLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELS-YCDVNENLHKY-STKI 210 (214)
T ss_dssp HHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCT-TSSEEEEGGGG-BC--
T ss_pred HHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHHhCCEEEEe-CCcc
Confidence 99999999999999999999999999999999998668999999999764 66778887654 5554
No 42
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=9e-45 Score=373.57 Aligned_cols=210 Identities=24% Similarity=0.292 Sum_probs=179.0
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh-hc
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-SL 227 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-~~ 227 (640)
+|+++||+++|.... ..+++|+|+||+|+ ||+++|+||||||||||+|+|+|.+ | .+|+|.++|+++.. ..
T Consensus 1 ml~~~~l~~~y~~~~----~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~--p-~~G~I~~~g~~~~~~~~ 72 (263)
T 2pjz_A 1 MIQLKNVGITLSGKG----YERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL--P-YSGNIFINGMEVRKIRN 72 (263)
T ss_dssp CEEEEEEEEEEEEET----TEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS--C-CEEEEEETTEEGGGCSC
T ss_pred CEEEEEEEEEeCCCC----ccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC--C-CCcEEEECCEECcchHH
Confidence 378999999983100 11579999999999 9999999999999999999999954 4 48999999998742 12
Q ss_pred cCcEE-EEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCccCCcCCHHHHHHHH
Q 006571 228 KSKIG-FVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKRVC 305 (640)
Q Consensus 228 ~~~i~-yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqrqRv~ 305 (640)
+++++ ||+|++.+ .+||+||+.++.... .. ..++++++++.+||. +..+.. +.+|||||||||+
T Consensus 73 ~~~i~~~v~Q~~~l--~~tv~enl~~~~~~~---~~----~~~~~~~~l~~~gl~~~~~~~~-----~~~LSgGqkqRv~ 138 (263)
T 2pjz_A 73 YIRYSTNLPEAYEI--GVTVNDIVYLYEELK---GL----DRDLFLEMLKALKLGEEILRRK-----LYKLSAGQSVLVR 138 (263)
T ss_dssp CTTEEECCGGGSCT--TSBHHHHHHHHHHHT---CC----CHHHHHHHHHHTTCCGGGGGSB-----GGGSCHHHHHHHH
T ss_pred hhheEEEeCCCCcc--CCcHHHHHHHhhhhc---ch----HHHHHHHHHHHcCCChhHhcCC-----hhhCCHHHHHHHH
Confidence 56899 99999987 789999999876432 11 134678899999998 766654 5689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccC-EEEEEcCCeEEEecChHHHH
Q 006571 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFD-KLILLGKGSLLYFGKASEAM 384 (640)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D-~i~vL~~G~iv~~G~~~~~~ 384 (640)
|||||+.+|++|||||||+|||+.++..+.+.|+++++ |||++||++. .+.++|| ++++|++|++++.|+++++.
T Consensus 139 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---tviivtHd~~-~~~~~~d~~i~~l~~G~i~~~g~~~~l~ 214 (263)
T 2pjz_A 139 TSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK---EGILVTHELD-MLNLYKEYKAYFLVGNRLQGPISVSELL 214 (263)
T ss_dssp HHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESCGG-GGGGCTTSEEEEEETTEEEEEEEHHHHH
T ss_pred HHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---cEEEEEcCHH-HHHHhcCceEEEEECCEEEEecCHHHHH
Confidence 99999999999999999999999999999999998743 9999999975 4668899 99999999999999999875
No 43
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=2.1e-44 Score=363.70 Aligned_cols=205 Identities=28% Similarity=0.421 Sum_probs=166.6
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhc
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (640)
..|+++||+++|. .+++++|+||||+|++||+++|+||||||||||+|+|+|.+. +.+|+|.++|
T Consensus 5 ~~l~~~~l~~~y~------~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g------- 69 (229)
T 2pze_A 5 TEVVMENVTAFWE------EGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE--PSEGKIKHSG------- 69 (229)
T ss_dssp EEEEEEEEEECSS------TTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEECS-------
T ss_pred ceEEEEEEEEEeC------CCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--CCccEEEECC-------
Confidence 3699999999872 124679999999999999999999999999999999999653 5689999998
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCc-------cccccccCccCCcCCHHH
Q 006571 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-------CQDTMIGGSFVRGVSGGE 300 (640)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~t~vg~~~~~~LSGGq 300 (640)
+|+||+|++.+++. ||+||+.++.. .... +..+.++.+++.+ ..++.++ ..+..|||||
T Consensus 70 --~i~~v~q~~~~~~~-tv~enl~~~~~------~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~LSgGq 135 (229)
T 2pze_A 70 --RISFCSQFSWIMPG-TIKENIIFGVS------YDEY----RYRSVIKACQLEEDISKFAEKDNIVLG-EGGITLSGGQ 135 (229)
T ss_dssp --CEEEECSSCCCCSB-CHHHHHHTTSC------CCHH----HHHHHHHHTTCHHHHTTSTTGGGSCBC-TTCTTSCHHH
T ss_pred --EEEEEecCCcccCC-CHHHHhhccCC------cChH----HHHHHHHHhCcHHHHHhCccccccccc-CCCCcCCHHH
Confidence 49999999999985 99999998531 1111 1223333334332 2333333 3357899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecC
Q 006571 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM-LQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (640)
Q Consensus 301 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~-L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (640)
||||+|||||+.+|++|||||||+|||+.++..+++. ++++. +|+|||++||++. .+ ..||++++|++|++++.|+
T Consensus 136 kqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~-~~-~~~d~v~~l~~G~i~~~g~ 212 (229)
T 2pze_A 136 RARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME-HL-KKADKILILHEGSSYFYGT 212 (229)
T ss_dssp HHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH-HH-HHCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChH-HH-HhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999997 45554 4899999999975 34 4699999999999999999
Q ss_pred hHHHH
Q 006571 380 ASEAM 384 (640)
Q Consensus 380 ~~~~~ 384 (640)
++++.
T Consensus 213 ~~~~~ 217 (229)
T 2pze_A 213 FSELQ 217 (229)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98875
No 44
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=3.4e-44 Score=363.94 Aligned_cols=211 Identities=23% Similarity=0.397 Sum_probs=166.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhcc
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~ 228 (640)
.|+++||+++|. ..++++|+||||+|++||+++|+||||||||||+|+|+|.+. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~y~------~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g-------- 66 (237)
T 2cbz_A 3 SITVRNATFTWA------RSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD--KVEGHVAIKG-------- 66 (237)
T ss_dssp CEEEEEEEEESC------TTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE--EEEEEEEECS--------
T ss_pred eEEEEEEEEEeC------CCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECC--------
Confidence 489999999982 124679999999999999999999999999999999999653 5689999998
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCccCCcCCHHHHHHHHHH
Q 006571 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKRVCIG 307 (640)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (640)
+|+||+|++.++ .+||+|||.++... .. ...+......++.+.+++. ...++.++ +.+.+|||||||||+||
T Consensus 67 -~i~~v~Q~~~~~-~~tv~enl~~~~~~--~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~LSgGqkqRv~lA 139 (237)
T 2cbz_A 67 -SVAYVPQQAWIQ-NDSLRENILFGCQL--EE--PYYRSVIQACALLPDLEILPSGDRTEIG-EKGVNLSGGQKQRVSLA 139 (237)
T ss_dssp -CEEEECSSCCCC-SEEHHHHHHTTSCC--CT--THHHHHHHHTTCHHHHTTSTTGGGSEES-TTSBCCCHHHHHHHHHH
T ss_pred -EEEEEcCCCcCC-CcCHHHHhhCcccc--CH--HHHHHHHHHHhhHHHHHhcccccccccc-CCCCCCCHHHHHHHHHH
Confidence 399999998765 78999999986321 11 1111111111122333332 22233333 45678999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH---HHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHH
Q 006571 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ---DIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (640)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~---~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (640)
|||+.+|+||||||||+|||+.++..+++.|+ ++. +|+|||++||++.. + ..||+|++|++|++++.|+++++.
T Consensus 140 raL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~-~-~~~d~v~~l~~G~i~~~g~~~~~~ 216 (237)
T 2cbz_A 140 RAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMSY-L-PQVDVIIVMSGGKISEMGSYQELL 216 (237)
T ss_dssp HHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCSTT-G-GGSSEEEEEETTEEEEEECHHHHH
T ss_pred HHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChHH-H-HhCCEEEEEeCCEEEEeCCHHHHh
Confidence 99999999999999999999999999999995 443 48999999999864 4 579999999999999999999875
Q ss_pred H
Q 006571 385 A 385 (640)
Q Consensus 385 ~ 385 (640)
.
T Consensus 217 ~ 217 (237)
T 2cbz_A 217 A 217 (237)
T ss_dssp H
T ss_pred h
Confidence 4
No 45
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=1e-44 Score=391.95 Aligned_cols=215 Identities=23% Similarity=0.365 Sum_probs=180.9
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (640)
..|+++||+++|. .+++.+|+||||+|++||+++|+||||||||||||+|+|.. + .+|+|.++|+++..
T Consensus 18 ~~i~~~~l~~~y~------~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~--~-~~G~I~i~G~~i~~~~ 88 (390)
T 3gd7_A 18 GQMTVKDLTAKYT------EGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL--N-TEGEIQIDGVSWDSIT 88 (390)
T ss_dssp CCEEEEEEEEESS------SSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCS--E-EEEEEEESSCBTTSSC
T ss_pred CeEEEEEEEEEec------CCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCC--C-CCeEEEECCEECCcCC
Confidence 4699999999982 23567999999999999999999999999999999999954 3 58999999998753
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccC------ccCCcCC
Q 006571 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGG------SFVRGVS 297 (640)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~------~~~~~LS 297 (640)
.+++.||||||++.+|+ +||+||+.+.. ... ++++.++++.++|.+..+..... .....||
T Consensus 89 ~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~------~~~----~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LS 157 (390)
T 3gd7_A 89 LEQWRKAFGVIPQKVFIFS-GTFRKNLDPNA------AHS----DQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLS 157 (390)
T ss_dssp HHHHHHTEEEESCCCCCCS-EEHHHHHCTTC------CSC----HHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSC
T ss_pred hHHHhCCEEEEcCCcccCc-cCHHHHhhhcc------ccC----HHHHHHHHHHhCCHHHHhhcccccccccccccccCC
Confidence 35688999999999997 69999996421 111 34577889999987665543321 1123499
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEe
Q 006571 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (640)
Q Consensus 298 GGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (640)
|||||||+|||||+.+|+||||||||||||+.++..+.+.|+++. .++|+|+++|++. ....||||++|++|+|+..
T Consensus 158 GGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~e--~~~~aDri~vl~~G~i~~~ 234 (390)
T 3gd7_A 158 HGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARIE--AMLECDQFLVIEENKVRQY 234 (390)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSSG--GGTTCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCHH--HHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999999999864 4899999999964 4567999999999999999
Q ss_pred cChHHHHH
Q 006571 378 GKASEAMA 385 (640)
Q Consensus 378 G~~~~~~~ 385 (640)
|+++++..
T Consensus 235 g~~~el~~ 242 (390)
T 3gd7_A 235 DSILELYH 242 (390)
T ss_dssp SSHHHHHH
T ss_pred CCHHHHHh
Confidence 99999864
No 46
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=4.3e-44 Score=438.77 Aligned_cols=355 Identities=20% Similarity=0.291 Sum_probs=236.4
Q ss_pred hHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchhh
Q 006571 10 LARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGA 89 (640)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 89 (640)
..++.++++.+....+.|.....+|||+++.+....+++.+.+........+.+...+.....+.....-..+..++.|+
T Consensus 878 ~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 957 (1284)
T 3g5u_A 878 QALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGA 957 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCTTTTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777888888999999999999999999888888877665433221110000000000000000000011111222
Q ss_pred hHh-----------------hhhhhhhhhhhccccCCCCccccccCCCCCCCCCccccccccCCCCCCCCCCCCCeeEEE
Q 006571 90 ALS-----------------RASSASLGLSFSFTGFTMPPDEIADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKF 152 (640)
Q Consensus 90 ~~~-----------------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 152 (640)
.++ ..+....+.+.++.. .+.....+..+.+...+.++..+.... .....+.....|++
T Consensus 958 ~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~ri~~~l~~~~~~~~~~~---~~~~~~~~~g~i~~ 1033 (1284)
T 3g5u_A 958 YLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAP-DYAKATVSASHIIRIIEKTPEIDSYST---QGLKPNMLEGNVQF 1033 (1284)
T ss_dssp CCCSSSCSCSTTHHHHHHHHHHHHHHHHHHTSSSC-CSTHHHHHHHHHHHHHHSCCSSSSCCS---SCCCTTTTSCCEEE
T ss_pred HHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCCCccccccc---ccccccCCCCcEEE
Confidence 222 222233333333332 222222221111111111111100000 00001112346999
Q ss_pred EeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hcc
Q 006571 153 TDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLK 228 (640)
Q Consensus 153 ~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~~~ 228 (640)
+||+|+|+. .+++++|+||||+|++||++||+||||||||||+++|+|. ++ +.+|+|.+||+++.+ .+|
T Consensus 1034 ~~v~~~y~~-----~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~-~~-p~~G~I~i~g~~i~~~~~~~~r 1106 (1284)
T 3g5u_A 1034 SGVVFNYPT-----RPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERF-YD-PMAGSVFLDGKEIKQLNVQWLR 1106 (1284)
T ss_dssp EEEEBCCSC-----GGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTS-SC-CSEEEEESSSSCTTSSCHHHHT
T ss_pred EEEEEECCC-----CCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcC-cC-CCCCEEEECCEEcccCCHHHHH
Confidence 999999832 2345799999999999999999999999999999999985 43 468999999999863 468
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHH-----HHHHHHcCCCccccccccCccCCcCCHHHHHH
Q 006571 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRA-----IDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (640)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v-----~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (640)
++|+||||++.+|+ .||+|||.++...+ ..+.++..+.. ++.++ .+++..||.+|.. ...||||||||
T Consensus 1107 ~~i~~v~Q~~~l~~-~ti~eNi~~~~~~~---~~~~~~i~~~~~~~~~~~~i~--~l~~gldt~vge~-G~~LSgGq~Qr 1179 (1284)
T 3g5u_A 1107 AQLGIVSQEPILFD-CSIAENIAYGDNSR---VVSYEEIVRAAKEANIHQFID--SLPDKYNTRVGDK-GTQLSGGQKQR 1179 (1284)
T ss_dssp TSCEEEESSCCCCS-SBHHHHHTCCCSSC---CCCHHHHHHHHHHHTCHHHHS--STTTGGGCBCSTT-SCSSCHHHHHH
T ss_pred hceEEECCCCcccc-ccHHHHHhccCCCC---CCCHHHHHHHHHHhCcHHHHH--hCccccccccCCC-CCccCHHHHHH
Confidence 89999999999986 59999998764211 22333322222 22232 4677889999854 56799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHH
Q 006571 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (640)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (640)
|+|||||+++|+||||||||+|||+.++..|.+.|+++ .+|+|||+++||++. + ..||||++|++|++++.|+|+++
T Consensus 1180 v~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~-~~~~tvi~isH~l~~-i-~~~dri~vl~~G~i~~~g~~~~l 1256 (1284)
T 3g5u_A 1180 IAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIVIAHRLST-I-QNADLIVVIQNGKVKEHGTHQQL 1256 (1284)
T ss_dssp HHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH-SSSSCEEEECSCTTG-G-GSCSEEEEEETBEEEEEECHHHH
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHh-CCCCEEEEEecCHHH-H-HcCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999999885 459999999999875 4 66999999999999999999998
Q ss_pred HH
Q 006571 384 MA 385 (640)
Q Consensus 384 ~~ 385 (640)
++
T Consensus 1257 ~~ 1258 (1284)
T 3g5u_A 1257 LA 1258 (1284)
T ss_dssp HH
T ss_pred Hh
Confidence 75
No 47
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=2.1e-41 Score=353.08 Aligned_cols=200 Identities=29% Similarity=0.456 Sum_probs=152.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhcc
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~ 228 (640)
.|+++||+|.+ +++|+|+||+|++||+++|+||||||||||+|+|+|.+. +.+|+|.++|
T Consensus 40 ~l~~~~l~~~~----------~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g-------- 99 (290)
T 2bbs_A 40 SLSFSNFSLLG----------TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE--PSEGKIKHSG-------- 99 (290)
T ss_dssp ----------C----------CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC--EEEEEEECCS--------
T ss_pred eEEEEEEEEcC----------ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECC--------
Confidence 59999999742 469999999999999999999999999999999999653 5689999998
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCc-------cccccccCccCCcCCHHHH
Q 006571 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-------CQDTMIGGSFVRGVSGGER 301 (640)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~t~vg~~~~~~LSGGqr 301 (640)
+|+||+|++.+|+. ||+||+. +. .. ... .+.+.++.+++.+ ..++.++ ..+..||||||
T Consensus 100 -~i~~v~Q~~~l~~~-tv~enl~-~~--~~----~~~----~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~LSgGq~ 165 (290)
T 2bbs_A 100 -RISFCSQNSWIMPG-TIKENII-GV--SY----DEY----RYRSVIKACQLEEDISKFAEKDNIVLG-EGGITLSGGQR 165 (290)
T ss_dssp -CEEEECSSCCCCSS-BHHHHHH-TT--CC----CHH----HHHHHHHHTTCHHHHHTSTTGGGCBC-----CCCCHHHH
T ss_pred -EEEEEeCCCccCcc-cHHHHhh-Cc--cc----chH----HHHHHHHHhChHHHHHhccccccchhc-CccCcCCHHHH
Confidence 49999999999985 9999998 42 11 111 1223344444432 2233333 23578999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecCh
Q 006571 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML-QDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (640)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L-~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (640)
|||+|||||+.+|++|||||||+|||+.++..+++.+ +++. +|+|||++||++. .+ ..||++++|++|++++.|++
T Consensus 166 QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~-~~-~~~d~i~~l~~G~i~~~g~~ 242 (290)
T 2bbs_A 166 ARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME-HL-KKADKILILHEGSSYFYGTF 242 (290)
T ss_dssp HHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH-HH-HHSSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHH-HH-HcCCEEEEEECCeEEEeCCH
Confidence 9999999999999999999999999999999999974 5554 4899999999974 34 56999999999999999999
Q ss_pred HHHHH
Q 006571 381 SEAMA 385 (640)
Q Consensus 381 ~~~~~ 385 (640)
+++..
T Consensus 243 ~~l~~ 247 (290)
T 2bbs_A 243 SELQN 247 (290)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 98753
No 48
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=5.8e-37 Score=349.08 Aligned_cols=205 Identities=22% Similarity=0.303 Sum_probs=174.6
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhc
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (640)
..++++|+++.| ++ ..|+++||+|++||+++|+||||||||||+|+|+|.+. +.+|+|.+
T Consensus 356 ~~l~~~~l~~~~--------~~-~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~--------- 415 (607)
T 3bk7_A 356 TLVEYPRLVKDY--------GS-FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE--PTEGKVEW--------- 415 (607)
T ss_dssp EEEEECCEEEEC--------SS-CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC--CSBSCCCC---------
T ss_pred eEEEEeceEEEe--------cc-eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEE---------
Confidence 479999999987 22 36899999999999999999999999999999999653 46899875
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHH
Q 006571 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (640)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (640)
...+|||+|++.+++.+||.|++....... ....+++.++++.+||.+..+.. +..|||||||||+||
T Consensus 416 ~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~-------~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSGGe~QRv~iA 483 (607)
T 3bk7_A 416 DLTVAYKPQYIKAEYEGTVYELLSKIDSSK-------LNSNFYKTELLKPLGIIDLYDRN-----VEDLSGGELQRVAIA 483 (607)
T ss_dssp CCCEEEECSSCCCCCSSBHHHHHHHHHHHH-------HHCHHHHHHTHHHHTCTTTTTSB-----GGGCCHHHHHHHHHH
T ss_pred eeEEEEEecCccCCCCCcHHHHHHhhhccC-------CCHHHHHHHHHHHcCCchHhcCC-----hhhCCHHHHHHHHHH
Confidence 246999999988777899999987641100 01235678899999998766654 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCcHHHhccCEEEEEcC--CeEEEecChHHHH
Q 006571 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGK--GSLLYFGKASEAM 384 (640)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~tH~~~~~i~~~~D~i~vL~~--G~iv~~G~~~~~~ 384 (640)
|+|+.+|+||||||||+|||+.++..+++.|+++++ .|+|||+++||+. .+..+||||++|++ |+++..|+++++.
T Consensus 484 raL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~adrv~vl~~~~g~~~~~g~p~~~~ 562 (607)
T 3bk7_A 484 ATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLIVFEGEPGRHGRALPPMGMR 562 (607)
T ss_dssp HHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred HHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEcCCcceEEecCCHHHHH
Confidence 999999999999999999999999999999999974 6999999999965 57788999999986 8889999998876
Q ss_pred H
Q 006571 385 A 385 (640)
Q Consensus 385 ~ 385 (640)
.
T Consensus 563 ~ 563 (607)
T 3bk7_A 563 E 563 (607)
T ss_dssp H
T ss_pred h
Confidence 5
No 49
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=4.9e-37 Score=345.78 Aligned_cols=205 Identities=23% Similarity=0.310 Sum_probs=173.4
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhc
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (640)
..++++|+++.| ++ ..|+++||+|++||++||+||||||||||+|+|+|.+. +.+|+|.+
T Consensus 286 ~~l~~~~l~~~~--------~~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~i~~--------- 345 (538)
T 1yqt_A 286 TLVTYPRLVKDY--------GS-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEE--PTEGKIEW--------- 345 (538)
T ss_dssp EEEEECCEEEEE--------TT-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC--CSBCCCCC---------
T ss_pred eEEEEeeEEEEE--------CC-EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEE---------
Confidence 469999999987 22 46999999999999999999999999999999999653 56899875
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHH
Q 006571 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (640)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (640)
...|+||+|++.+++.+||.|++........ ...++++++++.++|.+..++ .+..|||||||||+||
T Consensus 346 ~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~-------~~~~~~~~~l~~~~l~~~~~~-----~~~~LSGGe~qrv~lA 413 (538)
T 1yqt_A 346 DLTVAYKPQYIKADYEGTVYELLSKIDASKL-------NSNFYKTELLKPLGIIDLYDR-----EVNELSGGELQRVAIA 413 (538)
T ss_dssp CCCEEEECSSCCCCCSSBHHHHHHHHHHHHH-------TCHHHHHHTTTTTTCGGGTTS-----BGGGCCHHHHHHHHHH
T ss_pred CceEEEEecCCcCCCCCcHHHHHHhhhccCC-------CHHHHHHHHHHHcCChhhhcC-----ChhhCCHHHHHHHHHH
Confidence 2469999999887778999998875411100 013457788999999766654 4568999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCcHHHhccCEEEEEcC--CeEEEecChHHHH
Q 006571 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGK--GSLLYFGKASEAM 384 (640)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~tH~~~~~i~~~~D~i~vL~~--G~iv~~G~~~~~~ 384 (640)
|+|+.+|++|||||||+|||+.++..+++.|+++++ .|.|||++|||+. .+..+||||++|++ |+++..|+++++.
T Consensus 414 raL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~drv~vl~~~~~~~~~~g~~~~~~ 492 (538)
T 1yqt_A 414 ATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLMVFEGEPGKYGRALPPMGMR 492 (538)
T ss_dssp HHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred HHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceEeecCCHHHHH
Confidence 999999999999999999999999999999999974 5999999999965 57789999999986 7899999998876
Q ss_pred H
Q 006571 385 A 385 (640)
Q Consensus 385 ~ 385 (640)
.
T Consensus 493 ~ 493 (538)
T 1yqt_A 493 E 493 (538)
T ss_dssp H
T ss_pred h
Confidence 5
No 50
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=3.1e-36 Score=338.87 Aligned_cols=206 Identities=22% Similarity=0.268 Sum_probs=171.1
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhc
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (640)
..++++|+++.| ++ ..|+++|++|++||+++|+||||||||||+|+|+|.+. +.+|+|.+++
T Consensus 268 ~~l~~~~l~~~~--------~~-~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~~------- 329 (538)
T 3ozx_A 268 TKMKWTKIIKKL--------GD-FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT--ADEGSVTPEK------- 329 (538)
T ss_dssp EEEEECCEEEEE--------TT-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSBCCEESSC-------
T ss_pred ceEEEcceEEEE--------CC-EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECC-------
Confidence 468999999987 22 46888899999999999999999999999999999653 5689998765
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHH
Q 006571 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (640)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (640)
..++|++|+......+||.||+.+...... . .....++++++.++|.+..+. .+..|||||||||+||
T Consensus 330 -~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~----~--~~~~~~~~~l~~~~l~~~~~~-----~~~~LSGGq~QRv~iA 397 (538)
T 3ozx_A 330 -QILSYKPQRIFPNYDGTVQQYLENASKDAL----S--TSSWFFEEVTKRLNLHRLLES-----NVNDLSGGELQKLYIA 397 (538)
T ss_dssp -CCEEEECSSCCCCCSSBHHHHHHHHCSSTT----C--TTSHHHHHTTTTTTGGGCTTS-----BGGGCCHHHHHHHHHH
T ss_pred -eeeEeechhcccccCCCHHHHHHHhhhhcc----c--hhHHHHHHHHHHcCCHHHhcC-----ChhhCCHHHHHHHHHH
Confidence 358999999877667899999987422111 0 112346788888999876665 4578999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCcHHHhccCEEEEEcC--CeEEEecChHHHH
Q 006571 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGK--GSLLYFGKASEAM 384 (640)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~tH~~~~~i~~~~D~i~vL~~--G~iv~~G~~~~~~ 384 (640)
|||+.+|+||||||||+|||+.++..+++.|+++++ .|+|||++|||+. ++..+||||++|++ |.+...+++.++.
T Consensus 398 raL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 398 ATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp HHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred HHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence 999999999999999999999999999999999975 5899999999975 57789999999986 6677777765543
No 51
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=1.4e-35 Score=342.54 Aligned_cols=207 Identities=25% Similarity=0.388 Sum_probs=140.8
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHH---------------------HHHHcCCCCCC------cccEEEECCE
Q 006571 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLL---------------------NLLSGRLMEPT------VGGSITYNDH 221 (640)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl---------------------~~L~G~~~~~~------~~G~I~~~G~ 221 (640)
.+.+|+||||+|++||++||+||||||||||+ +++.|... |. ..|.|.++|.
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~-~~~~~i~~~~~~i~~~~~ 108 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEK-PDVDAIEGLSPAISIDQK 108 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC---------------CCCSEEESCCCEEEESSC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhccccc-CCccceeccccceEecCc
Confidence 45799999999999999999999999999998 77776432 22 1567778887
Q ss_pred eCChhccCcEEEEccCCC-------------------CCCCCCHHHHHHHHHhccCCCCccHHHHH------HHHHHHHH
Q 006571 222 PYSKSLKSKIGFVTQDDV-------------------LFPHLTVKETLTYAALLRLPNTLTKQQKE------KRAIDVIN 276 (640)
Q Consensus 222 ~~~~~~~~~i~yV~Q~~~-------------------l~~~lTV~Enl~~~~~~~~~~~~~~~~~~------~~v~~~l~ 276 (640)
+.....++.+++|+|... .++.+||+||+.+......... ...... ....++++
T Consensus 109 ~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~ 187 (670)
T 3ux8_A 109 TTSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEK-EAQIARLILREIRDRLGFLQ 187 (670)
T ss_dssp C-----CCBHHHHTTCC-------------------------CC---------------------------CHHHHHHHH
T ss_pred hhhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchh-hhHHHHHHHHHHHHHHHHHH
Confidence 654434455666655433 2457899999987532211110 000000 11224578
Q ss_pred HcCCCcc-ccccccCccCCcCCHHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeC
Q 006571 277 ELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNEIIINPS--LLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIH 353 (640)
Q Consensus 277 ~lgL~~~-~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~--iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH 353 (640)
.+||.+. .+. .+.+|||||||||+|||||+.+|+ +|||||||+|||+.++..+++.|++++++|.|||+|||
T Consensus 188 ~~gL~~~~~~~-----~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtH 262 (670)
T 3ux8_A 188 NVGLDYLTLSR-----SAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEH 262 (670)
T ss_dssp HTTCTTCCTTC-----BGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECC
T ss_pred HcCCchhhhcC-----CcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 8899754 344 356899999999999999999998 99999999999999999999999999888999999999
Q ss_pred CCCcHHHhccCEEEEE------cCCeEEEecChHHHH
Q 006571 354 QPSSRLFHKFDKLILL------GKGSLLYFGKASEAM 384 (640)
Q Consensus 354 ~~~~~i~~~~D~i~vL------~~G~iv~~G~~~~~~ 384 (640)
|+. . ...||+|++| ++|++++.|+++++.
T Consensus 263 d~~-~-~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 263 DED-T-MLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp CHH-H-HHHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred CHH-H-HhhCCEEEEecccccccCCEEEEecCHHHHh
Confidence 975 3 4569999999 899999999999875
No 52
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=2e-34 Score=339.68 Aligned_cols=199 Identities=22% Similarity=0.301 Sum_probs=166.1
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhc
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (640)
..|...|++++| +++.+|+|+||+|++|++++|+||||||||||+|+|+| |+| +|.+....
T Consensus 434 ~~L~~~~ls~~y--------g~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag--------G~i--~g~~~~~~- 494 (986)
T 2iw3_A 434 EDLCNCEFSLAY--------GAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN--------GQV--DGFPTQEE- 494 (986)
T ss_dssp CEEEEEEEEEEE--------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH--------TCS--TTCCCTTT-
T ss_pred ceeEEeeEEEEE--------CCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC--------CCc--CCCccccc-
Confidence 357778999998 45679999999999999999999999999999999995 222 34433222
Q ss_pred cCcEEEEccCC-CCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCccCCcCCHHHHHHHH
Q 006571 228 KSKIGFVTQDD-VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKRVC 305 (640)
Q Consensus 228 ~~~i~yV~Q~~-~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqrqRv~ 305 (640)
.+++|++|+. .+++.+||.||+.+ .. . .. ++++.++++.+||. +..+.. +.+||||||||++
T Consensus 495 -~~~~~v~q~~~~~~~~ltv~e~l~~--~~--~-~~-----~~~v~~~L~~lgL~~~~~~~~-----~~~LSGGqkQRva 558 (986)
T 2iw3_A 495 -CRTVYVEHDIDGTHSDTSVLDFVFE--SG--V-GT-----KEAIKDKLIEFGFTDEMIAMP-----ISALSGGWKMKLA 558 (986)
T ss_dssp -SCEEETTCCCCCCCTTSBHHHHHHT--TC--S-SC-----HHHHHHHHHHTTCCHHHHHSB-----GGGCCHHHHHHHH
T ss_pred -eeEEEEcccccccccCCcHHHHHHH--hh--c-CH-----HHHHHHHHHHcCCChhhhcCC-----cccCCHHHHHHHH
Confidence 2478999984 67888999999976 11 1 11 45688899999995 455544 4689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEE-EecChHHHH
Q 006571 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL-YFGKASEAM 384 (640)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv-~~G~~~~~~ 384 (640)
|||+|+.+|+||||||||+|||+.++..+.+.|++ .|+|||++||++. .+.++||+|++|++|+++ +.|+++++.
T Consensus 559 LArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g~tvIivSHdl~-~l~~~adrii~L~~G~iv~~~G~~~e~~ 634 (986)
T 2iw3_A 559 LARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---CGITSITISHDSV-FLDNVCEYIINYEGLKLRKYKGNFTEFV 634 (986)
T ss_dssp HHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---SCSEEEEECSCHH-HHHHHCSEEEEEETTEEEEEESCHHHHH
T ss_pred HHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh---CCCEEEEEECCHH-HHHHhCCEEEEEECCeeecCCCCHHHHH
Confidence 99999999999999999999999999999999987 5899999999964 577899999999999997 789998876
Q ss_pred H
Q 006571 385 A 385 (640)
Q Consensus 385 ~ 385 (640)
.
T Consensus 635 ~ 635 (986)
T 2iw3_A 635 K 635 (986)
T ss_dssp H
T ss_pred h
Confidence 4
No 53
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7e-35 Score=331.59 Aligned_cols=202 Identities=23% Similarity=0.254 Sum_probs=165.3
Q ss_pred EeEEEEEeeccccccccccceeceEEEEeCC-----eEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhc
Q 006571 153 TDVTYKVILKGMTSSEEKDILNGITGSVNPG-----EVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (640)
Q Consensus 153 ~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~G-----e~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (640)
++++++|+ ..+.+++|+||++.+| |+++|+||||||||||+++|+|.+. +.+|+. + .
T Consensus 350 ~~~~~~y~-------~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~--p~~G~~------~---~ 411 (608)
T 3j16_B 350 ASRAFSYP-------SLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALK--PDEGQD------I---P 411 (608)
T ss_dssp SSSCCEEC-------CEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSC--CSBCCC------C---C
T ss_pred cceeEEec-------CcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCC--CCCCcC------c---c
Confidence 55667762 2245899999999999 7899999999999999999999653 457752 2 1
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHH
Q 006571 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (640)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (640)
+..++|++|+.......||+|++...... ... ....++++++.++|.+..+. .+..|||||||||+||
T Consensus 412 ~~~i~~~~q~~~~~~~~tv~e~~~~~~~~----~~~---~~~~~~~~l~~l~l~~~~~~-----~~~~LSGGqkQRv~iA 479 (608)
T 3j16_B 412 KLNVSMKPQKIAPKFPGTVRQLFFKKIRG----QFL---NPQFQTDVVKPLRIDDIIDQ-----EVQHLSGGELQRVAIV 479 (608)
T ss_dssp SCCEEEECSSCCCCCCSBHHHHHHHHCSS----TTT---SHHHHHHTHHHHTSTTTSSS-----BSSSCCHHHHHHHHHH
T ss_pred CCcEEEecccccccCCccHHHHHHHHhhc----ccc---cHHHHHHHHHHcCChhhhcC-----ChhhCCHHHHHHHHHH
Confidence 34699999997665567999988643211 111 12356788999999877665 4578999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEeCCCCcHHHhccCEEEEEcC--CeEEEecChHHHH
Q 006571 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGK--GSLLYFGKASEAM 384 (640)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~-~~g~TvI~~tH~~~~~i~~~~D~i~vL~~--G~iv~~G~~~~~~ 384 (640)
|||+.+|+||||||||+|||+.++..+++.|++++ +.|+|||++|||+. ++..+||||++|++ |+++..|+|++++
T Consensus 480 raL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvivl~~~~g~~~~~g~p~~~~ 558 (608)
T 3j16_B 480 LALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVFEGIPSKNAHARAPESLL 558 (608)
T ss_dssp HHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEECEEETTTEEECCCCEEHH
T ss_pred HHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCCCeEEecCChHHHh
Confidence 99999999999999999999999999999999986 45999999999965 57789999999996 8999999999887
Q ss_pred H
Q 006571 385 A 385 (640)
Q Consensus 385 ~ 385 (640)
.
T Consensus 559 ~ 559 (608)
T 3j16_B 559 T 559 (608)
T ss_dssp H
T ss_pred h
Confidence 5
No 54
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=3.4e-35 Score=330.83 Aligned_cols=194 Identities=25% Similarity=0.354 Sum_probs=155.9
Q ss_pred EEE-EeEEEEEeeccccccccc-cceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEE---------EE
Q 006571 150 LKF-TDVTYKVILKGMTSSEEK-DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSI---------TY 218 (640)
Q Consensus 150 l~~-~~vs~~~~~~~~~~~~~~-~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I---------~~ 218 (640)
.++ +||+++| +++ .+|+||| +|++||+++|+||||||||||+|+|+|.+. +.+|++ .+
T Consensus 21 ~~~~~~ls~~y--------g~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~--p~~G~~~~~~~~~~~~~ 89 (538)
T 1yqt_A 21 EQLEEDCVHRY--------GVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLI--PNLCGDNDSWDGVIRAF 89 (538)
T ss_dssp ---CCCEEEEC--------STTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC--CCTTTTCCSHHHHHHHT
T ss_pred hhHhcCcEEEE--------CCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCccCcchhhhHHhh
Confidence 455 5899988 233 5899999 999999999999999999999999999653 457875 45
Q ss_pred CCEeCCh------hccCcEEEEccCCCCCCC---CCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCcccccccc
Q 006571 219 NDHPYSK------SLKSKIGFVTQDDVLFPH---LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIG 289 (640)
Q Consensus 219 ~G~~~~~------~~~~~i~yV~Q~~~l~~~---lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg 289 (640)
+|.++.. ..+..+++++|+..+++. .|+.|++.... ..++++++++.+||.+..+..
T Consensus 90 ~g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~------------~~~~~~~~l~~lgl~~~~~~~-- 155 (538)
T 1yqt_A 90 RGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD------------ETGKLEEVVKALELENVLERE-- 155 (538)
T ss_dssp TTSTHHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHC------------SSSCHHHHHHHTTCTTTTTSB--
T ss_pred CCccHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhh------------HHHHHHHHHHHcCCChhhhCC--
Confidence 6765421 112458999997544332 38999886421 113477899999998766654
Q ss_pred CccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEE
Q 006571 290 GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 369 (640)
Q Consensus 290 ~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL 369 (640)
+.+|||||||||+||+||+.+|+||||||||++||+.++..+++.|++++++|+|||+++|++. .+..+||+|++|
T Consensus 156 ---~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~-~~~~~~dri~vl 231 (538)
T 1yqt_A 156 ---IQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLA-VLDYLSDIIHVV 231 (538)
T ss_dssp ---GGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEE
T ss_pred ---hhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 5689999999999999999999999999999999999999999999999888999999999965 577889999999
Q ss_pred cCC
Q 006571 370 GKG 372 (640)
Q Consensus 370 ~~G 372 (640)
++|
T Consensus 232 ~~~ 234 (538)
T 1yqt_A 232 YGE 234 (538)
T ss_dssp EEE
T ss_pred cCc
Confidence 865
No 55
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=3e-35 Score=334.97 Aligned_cols=191 Identities=26% Similarity=0.373 Sum_probs=156.0
Q ss_pred EeEEEEEeeccccccccc-cceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEE---------EECCEe
Q 006571 153 TDVTYKVILKGMTSSEEK-DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSI---------TYNDHP 222 (640)
Q Consensus 153 ~~vs~~~~~~~~~~~~~~-~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I---------~~~G~~ 222 (640)
+||+++| +++ .+|+|+| +|++||+++|+||||||||||+|+|+|.+. +.+|++ .++|.+
T Consensus 95 ~~ls~~y--------g~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~--p~~G~~~~~~~~~~~~~~G~~ 163 (607)
T 3bk7_A 95 EDCVHRY--------GVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLI--PNLCEDNDSWDNVIRAFRGNE 163 (607)
T ss_dssp GSEEEEC--------STTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSC--CCTTTTCCCHHHHHHHTTTST
T ss_pred CCeEEEE--------CCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCC--CCCCccccccchhhheeCCEe
Confidence 7888887 233 5899999 999999999999999999999999999654 457885 456765
Q ss_pred CCh------hccCcEEEEccCCCCCC---CCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccC
Q 006571 223 YSK------SLKSKIGFVTQDDVLFP---HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFV 293 (640)
Q Consensus 223 ~~~------~~~~~i~yV~Q~~~l~~---~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~ 293 (640)
+.. ..+..+++++|....++ ..||.||+... . ..++++++++.+||.+..+.. +
T Consensus 164 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~------~------~~~~~~~~L~~lgL~~~~~~~-----~ 226 (607)
T 3bk7_A 164 LQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKV------D------EVGKFEEVVKELELENVLDRE-----L 226 (607)
T ss_dssp HHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHT------C------CSSCHHHHHHHTTCTTGGGSB-----G
T ss_pred hhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhh------H------HHHHHHHHHHHcCCCchhCCC-----h
Confidence 432 11345889998743322 23999998641 0 013467899999998877654 4
Q ss_pred CcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCC
Q 006571 294 RGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKG 372 (640)
Q Consensus 294 ~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G 372 (640)
.+|||||||||+|||||+.+|+||||||||++||+.++..+.+.|++++++|+|||+++||+. .+..+||+|++|+++
T Consensus 227 ~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~-~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 227 HQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLA-VLDYLSDVIHVVYGE 304 (607)
T ss_dssp GGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEESC
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHHhhCCEEEEECCC
Confidence 689999999999999999999999999999999999999999999999878999999999965 567889999999865
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=2.2e-34 Score=339.29 Aligned_cols=208 Identities=22% Similarity=0.382 Sum_probs=161.7
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhc
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (640)
..|+++||+|+|+ ..++++|+|+||+|++||+++|+||||||||||+|+|+|.+. +.+|+|.++|.
T Consensus 670 ~mL~v~nLs~~Y~------g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~--P~sG~I~~~~~------ 735 (986)
T 2iw3_A 670 AIVKVTNMEFQYP------GTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELL--PTSGEVYTHEN------ 735 (986)
T ss_dssp EEEEEEEEEECCT------TCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSC--CSEEEEEECTT------
T ss_pred ceEEEEeeEEEeC------CCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEEcCc------
Confidence 4699999999872 123679999999999999999999999999999999999653 56899999863
Q ss_pred cCcEEEEccCCCC----CCCCCHHHHHHHHHhcc------------C-CC------------------------------
Q 006571 228 KSKIGFVTQDDVL----FPHLTVKETLTYAALLR------------L-PN------------------------------ 260 (640)
Q Consensus 228 ~~~i~yV~Q~~~l----~~~lTV~Enl~~~~~~~------------~-~~------------------------------ 260 (640)
.+|+|++|++.. ....|++|++.+..... . +.
T Consensus 736 -~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~ 814 (986)
T 2iw3_A 736 -CRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNT 814 (986)
T ss_dssp -CCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTE
T ss_pred -cceEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhccc
Confidence 258999997531 12468888887632100 0 00
Q ss_pred ---------------------C--------ccH--------------------------HHHHHHHHHHHHHcCCCcc--
Q 006571 261 ---------------------T--------LTK--------------------------QQKEKRAIDVINELGLERC-- 283 (640)
Q Consensus 261 ---------------------~--------~~~--------------------------~~~~~~v~~~l~~lgL~~~-- 283 (640)
. ... ....++++++++.+||.+.
T Consensus 815 ~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~ 894 (986)
T 2iw3_A 815 YEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIV 894 (986)
T ss_dssp EEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHH
T ss_pred chhhhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhh
Confidence 0 000 0013467889999999742
Q ss_pred ccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhcc
Q 006571 284 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKF 363 (640)
Q Consensus 284 ~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~ 363 (640)
.+. .+.+|||||||||+|||+|+.+|+||||||||+|||+.+...+.+.|+++ +.|||++||++. .+..+|
T Consensus 895 ~~~-----~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g~tVIiISHD~e-~v~~l~ 965 (986)
T 2iw3_A 895 SHS-----RIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EGGVIIITHSAE-FTKNLT 965 (986)
T ss_dssp HHS-----CGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---SSEEEEECSCHH-HHTTTC
T ss_pred cCC-----CccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh---CCEEEEEECCHH-HHHHhC
Confidence 343 34689999999999999999999999999999999999999999888754 679999999964 466789
Q ss_pred CEEEEEcCCeEEEecC
Q 006571 364 DKLILLGKGSLLYFGK 379 (640)
Q Consensus 364 D~i~vL~~G~iv~~G~ 379 (640)
|+|++|++|+++..|+
T Consensus 966 DrVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 966 EEVWAVKDGRMTPSGH 981 (986)
T ss_dssp CEEECCBTTBCCC---
T ss_pred CEEEEEECCEEEEeCC
Confidence 9999999999988774
No 57
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=1.7e-33 Score=325.23 Aligned_cols=199 Identities=27% Similarity=0.444 Sum_probs=150.2
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHc-----CC---------------CCCCcccEEEECCEeCChhc-
Q 006571 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSG-----RL---------------MEPTVGGSITYNDHPYSKSL- 227 (640)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G-----~~---------------~~~~~~G~I~~~G~~~~~~~- 227 (640)
.+.+|+||||+|++||++||+||||||||||+++|.+ .+ .. ...|.|.++|.++....
T Consensus 334 ~~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~-~~~~~i~~~~~~~~~~~~ 412 (670)
T 3ux8_A 334 REHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLE-HLDKVIDIDQSPIGRTPR 412 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGG-GCSEEEECCSSCSCSSTT
T ss_pred cccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccc-ccCceeEeccccCCCCCC
Confidence 3468999999999999999999999999999987641 00 00 12467888887763100
Q ss_pred --------------------------------------------cCcEEEEccCCCCCC---------------------
Q 006571 228 --------------------------------------------KSKIGFVTQDDVLFP--------------------- 242 (640)
Q Consensus 228 --------------------------------------------~~~i~yV~Q~~~l~~--------------------- 242 (640)
....|+++|+..++|
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (670)
T 3ux8_A 413 SNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEV 492 (670)
T ss_dssp CCHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTC
T ss_pred cchhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhhe
Confidence 011244444433332
Q ss_pred -----------CCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCcc-ccccccCccCCcCCHHHHHHHHHHHHH
Q 006571 243 -----------HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNEI 310 (640)
Q Consensus 243 -----------~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~t~vg~~~~~~LSGGqrqRv~IA~aL 310 (640)
.+||.||+.+... . . ..+++.+.++.++|... .+ ..+.+|||||||||+|||||
T Consensus 493 ~~~~~~~~~~~~ltv~e~l~~~~~------~-~--~~~~~~~~l~~~~l~~~~~~-----~~~~~LSgG~~qrv~iAraL 558 (670)
T 3ux8_A 493 TYKGKNIAEVLDMTVEDALDFFAS------I-P--KIKRKLETLYDVGLGYMKLG-----QPATTLSGGEAQRVKLAAEL 558 (670)
T ss_dssp CBTTBCHHHHHTSBHHHHHHHTTT------C-H--HHHHHHHHHHHTTCTTSBTT-----CCGGGCCHHHHHHHHHHHHH
T ss_pred eecCCCHHHHhhCCHHHHHHHHHH------h-h--hHHHHHHHHHHcCCchhhcc-----CCchhCCHHHHHHHHHHHHH
Confidence 4799999987532 1 1 22345677888998642 23 34578999999999999999
Q ss_pred hhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEE------cCCeEEEecChH
Q 006571 311 IINP---SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKAS 381 (640)
Q Consensus 311 ~~~P---~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL------~~G~iv~~G~~~ 381 (640)
+.+| +||||||||+|||+.++..+++.|++++++|+|||+|+|++. . ...||+|++| ++|+|++.|+++
T Consensus 559 ~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~-~-~~~~d~i~~l~~~~g~~~G~i~~~g~~~ 636 (670)
T 3ux8_A 559 HRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD-V-IKTADYIIDLGPEGGDRGGQIVAVGTPE 636 (670)
T ss_dssp HSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-H-HTTCSEEEEEESSSGGGCCEEEEEECHH
T ss_pred hhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-H-HHhCCEEEEecCCcCCCCCEEEEecCHH
Confidence 9987 599999999999999999999999999888999999999975 3 4679999999 899999999999
Q ss_pred HHH
Q 006571 382 EAM 384 (640)
Q Consensus 382 ~~~ 384 (640)
++.
T Consensus 637 ~~~ 639 (670)
T 3ux8_A 637 EVA 639 (670)
T ss_dssp HHH
T ss_pred HHH
Confidence 984
No 58
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.97 E-value=1.7e-30 Score=305.81 Aligned_cols=200 Identities=27% Similarity=0.479 Sum_probs=154.4
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHH---------HHHHcCCCCC----Ccc------cEEEECCEeCChh----
Q 006571 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLL---------NLLSGRLMEP----TVG------GSITYNDHPYSKS---- 226 (640)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl---------~~L~G~~~~~----~~~------G~I~~~G~~~~~~---- 226 (640)
...|+|||++|++|++++|+||||||||||+ +++.+....+ ... +.|.+++.++...
T Consensus 597 ~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~ 676 (916)
T 3pih_A 597 HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSN 676 (916)
T ss_dssp STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCC
T ss_pred cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecccccccccccc
Confidence 4579999999999999999999999999997 4554422110 011 3455655554210
Q ss_pred -----------------------------------------ccCcEEEEccCCCCCCC----------------------
Q 006571 227 -----------------------------------------LKSKIGFVTQDDVLFPH---------------------- 243 (640)
Q Consensus 227 -----------------------------------------~~~~i~yV~Q~~~l~~~---------------------- 243 (640)
..+..|++.|+..++|.
T Consensus 677 ~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~ 756 (916)
T 3pih_A 677 PATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITY 756 (916)
T ss_dssp HHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCB
T ss_pred ccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhh
Confidence 01235788888766653
Q ss_pred ----------CCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhC
Q 006571 244 ----------LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIIN 313 (640)
Q Consensus 244 ----------lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~ 313 (640)
+||.|++.|... . ....++.++|+.+||.... + +..+.+|||||||||+|||||+++
T Consensus 757 ~g~~i~~vl~~tv~eal~f~~~------~---~~~~~~~~~L~~vGL~~~~---l-gq~~~~LSGGErQRV~LAraL~~~ 823 (916)
T 3pih_A 757 KGKNISDILDMTVDEALEFFKN------I---PSIKRTLQVLHDVGLGYVK---L-GQPATTLSGGEAQRIKLASELRKR 823 (916)
T ss_dssp TTBCHHHHHSSBHHHHHHHTTT------C---HHHHHHHHHHHHTTGGGSB---T-TCCSTTCCHHHHHHHHHHHHHTSC
T ss_pred ccCCHHHHhhCCHHHHHHHHhc------c---hhHHHHHHHHHHcCCchhh---c-cCCccCCCHHHHHHHHHHHHHhhC
Confidence 678888887531 1 1234567889999996421 1 234578999999999999999987
Q ss_pred C---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEE------cCCeEEEecChHHHH
Q 006571 314 P---SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEAM 384 (640)
Q Consensus 314 P---~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL------~~G~iv~~G~~~~~~ 384 (640)
| +||||||||+|||+.+...+++.|++++++|.|||+|+|++. +...||+|++| ++|+|++.|+++++.
T Consensus 824 p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~--~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~ 901 (916)
T 3pih_A 824 DTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD--VIKNADHIIDLGPEGGKEGGYIVATGTPEEIA 901 (916)
T ss_dssp CCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEEESSSGGGCCEEEEEESHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHHhCCEEEEecCCCCCCCCEEEEEcCHHHHH
Confidence 6 799999999999999999999999999988999999999974 34679999999 899999999999986
No 59
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7e-32 Score=306.92 Aligned_cols=188 Identities=26% Similarity=0.315 Sum_probs=143.2
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEE-----------EECCEeCCh----hccCcE--E
Q 006571 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSI-----------TYNDHPYSK----SLKSKI--G 232 (640)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I-----------~~~G~~~~~----~~~~~i--~ 232 (640)
...|++++ .+++||++||+||||||||||||+|+|.+. +.+|+| .+.|.++.. .....+ .
T Consensus 91 ~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~--P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 167 (608)
T 3j16_B 91 SFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQK--PNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAI 167 (608)
T ss_dssp SCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC--CCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCE
T ss_pred ceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCC--CCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhh
Confidence 34677777 689999999999999999999999999654 457987 334433211 111222 3
Q ss_pred EEccCCCC------CCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHH
Q 006571 233 FVTQDDVL------FPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (640)
Q Consensus 233 yV~Q~~~l------~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (640)
+.+|.... -+..++.+++.... . ...++++++++.+||.+..++. +..|||||||||+|
T Consensus 168 ~~~~~~~~~~~~~~~~~~~v~~~l~~~~------~----~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGe~Qrv~i 232 (608)
T 3j16_B 168 IKPQYVDNIPRAIKGPVQKVGELLKLRM------E----KSPEDVKRYIKILQLENVLKRD-----IEKLSGGELQRFAI 232 (608)
T ss_dssp EECCCTTTHHHHCSSSSSHHHHHHHHHC------C----SCHHHHHHHHHHHTCTGGGGSC-----TTTCCHHHHHHHHH
T ss_pred hchhhhhhhhhhhcchhhHHHHHHhhhh------h----hHHHHHHHHHHHcCCcchhCCC-----hHHCCHHHHHHHHH
Confidence 34443211 11235666654321 0 1134678899999998877754 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEE
Q 006571 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (640)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (640)
||||+.+|++|||||||++||+.++..+.+.|++++++|+|||+++|++. ++..+||+|++|++|..++
T Consensus 233 AraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~-~~~~~~drv~vl~~~~~~~ 301 (608)
T 3j16_B 233 GMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLS-VLDYLSDFVCIIYGVPSVY 301 (608)
T ss_dssp HHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHH-HHHHHCSEEEEEESCTTTE
T ss_pred HHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcccc
Confidence 99999999999999999999999999999999999888999999999965 5778999999999876544
No 60
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.97 E-value=4.3e-32 Score=305.15 Aligned_cols=173 Identities=21% Similarity=0.283 Sum_probs=137.1
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEE-----------EECCEeCChh----c--cCcEEEEccC----C
Q 006571 180 VNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSI-----------TYNDHPYSKS----L--KSKIGFVTQD----D 238 (640)
Q Consensus 180 i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I-----------~~~G~~~~~~----~--~~~i~yV~Q~----~ 238 (640)
+++||++||+||||||||||+|+|+|.+. +.+|+| .++|.++... . ...+..+.|. +
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~--p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEII--PNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYAS 99 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSSC--CCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGG
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhh
Confidence 45999999999999999999999999654 457988 6777765321 1 1224444443 3
Q ss_pred CCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEE
Q 006571 239 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 318 (640)
Q Consensus 239 ~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLl 318 (640)
.++. .||+|++.... ..++++++++.+|+.+..++. +..|||||||||+|||||+.+|+|||
T Consensus 100 ~~~~-~~v~~~l~~~~------------~~~~~~~~l~~l~l~~~~~~~-----~~~LSgGe~Qrv~iA~aL~~~p~ill 161 (538)
T 3ozx_A 100 KFLK-GTVNEILTKID------------ERGKKDEVKELLNMTNLWNKD-----ANILSGGGLQRLLVAASLLREADVYI 161 (538)
T ss_dssp TTCC-SBHHHHHHHHC------------CSSCHHHHHHHTTCGGGTTSB-----GGGCCHHHHHHHHHHHHHHSCCSEEE
T ss_pred hhcc-CcHHHHhhcch------------hHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 3443 48888765321 122467889999998777654 46899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeE
Q 006571 319 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (640)
Q Consensus 319 LDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~i 374 (640)
|||||++||+.++..+.+.|+++.+ |+|||+++|++. .+..+||+|++|++|..
T Consensus 162 lDEPts~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl~-~~~~~~d~i~vl~~~~~ 215 (538)
T 3ozx_A 162 FDQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHDLI-VLDYLTDLIHIIYGESS 215 (538)
T ss_dssp EESTTTTCCHHHHHHHHHHHHHHCT-TSEEEEECSCHH-HHHHHCSEEEEEEEETT
T ss_pred EECCcccCCHHHHHHHHHHHHHHhC-CCEEEEEEeChH-HHHhhCCEEEEecCCcc
Confidence 9999999999999999999999976 999999999975 57889999999987643
No 61
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.97 E-value=6.1e-31 Score=307.93 Aligned_cols=208 Identities=27% Similarity=0.437 Sum_probs=159.4
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHH-c----CCC----CCC----ccc
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLS-G----RLM----EPT----VGG 214 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~-G----~~~----~~~----~~G 214 (640)
..|+++|++. ..|+|||++|++||++||+|+||||||||+++|. | .+. .+. ..|
T Consensus 628 ~~L~v~~l~~-------------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G 694 (972)
T 2r6f_A 628 RWLEVVGARE-------------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRG 694 (972)
T ss_dssp CEEEEEEECS-------------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEEC
T ss_pred eEEEEecCcc-------------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeecc
Confidence 3588887741 3699999999999999999999999999999853 2 111 110 123
Q ss_pred ------EEEECCEeCChhc-----------------------cCcEEEEccCCCCC----------------------C-
Q 006571 215 ------SITYNDHPYSKSL-----------------------KSKIGFVTQDDVLF----------------------P- 242 (640)
Q Consensus 215 ------~I~~~G~~~~~~~-----------------------~~~i~yV~Q~~~l~----------------------~- 242 (640)
.|.++|.++.... .+.+||++|...+. +
T Consensus 695 ~~~~~~~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~ 774 (972)
T 2r6f_A 695 LEHLDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPD 774 (972)
T ss_dssp GGGCSEEEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCC
T ss_pred ccccceEEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhcccc
Confidence 5888988763110 12357777753321 1
Q ss_pred -------------------------------CCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCc-cccccccC
Q 006571 243 -------------------------------HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGG 290 (640)
Q Consensus 243 -------------------------------~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~ 290 (640)
.+||.|++.|... .. ...++.++++.+||.. ..+.
T Consensus 775 v~~~ce~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~------~~---~~~~~~~~L~~~gL~~~~l~~---- 841 (972)
T 2r6f_A 775 VYVPCEVCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFAS------IP---KIKRKLETLYDVGLGYMKLGQ---- 841 (972)
T ss_dssp EEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCS------CH---HHHHHHHHHHHTTCSSSBTTC----
T ss_pred ccccccccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhc------ch---hHHHHHHHHHHcCCCcccccC----
Confidence 3578888876421 11 1234568899999975 3443
Q ss_pred ccCCcCCHHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEE
Q 006571 291 SFVRGVSGGERKRVCIGNEIIINP---SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLI 367 (640)
Q Consensus 291 ~~~~~LSGGqrqRv~IA~aL~~~P---~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~ 367 (640)
.+..|||||||||+||++|+.+| +||||||||+|||+.+...+++.|++++++|.|||+++|++. . ...||+|+
T Consensus 842 -~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~-~-i~~aDrIi 918 (972)
T 2r6f_A 842 -PATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD-V-IKTADYII 918 (972)
T ss_dssp -CGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-H-HTTCSEEE
T ss_pred -chhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-H-HHhCCEEE
Confidence 45789999999999999999875 999999999999999999999999999988999999999965 3 46899999
Q ss_pred EE------cCCeEEEecChHHHH
Q 006571 368 LL------GKGSLLYFGKASEAM 384 (640)
Q Consensus 368 vL------~~G~iv~~G~~~~~~ 384 (640)
+| ++|++++.|+++++.
T Consensus 919 vL~p~gG~~~G~Iv~~g~~~el~ 941 (972)
T 2r6f_A 919 DLGPEGGDRGGQIVAVGTPEEVA 941 (972)
T ss_dssp EECSSSTTSCCSEEEEESHHHHH
T ss_pred EEcCCCCCCCCEEEEecCHHHHH
Confidence 99 789999999999875
No 62
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.97 E-value=1.9e-30 Score=303.23 Aligned_cols=208 Identities=27% Similarity=0.426 Sum_probs=156.9
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHH-HHcCCC------CC----------
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNL-LSGRLM------EP---------- 210 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~-L~G~~~------~~---------- 210 (640)
..|+++|+++ .+|+|||++|++||++||+|+||||||||+++ |+|.+. .+
T Consensus 501 ~~L~v~~l~~-------------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~ 567 (842)
T 2vf7_A 501 GWLELNGVTR-------------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPA 567 (842)
T ss_dssp CEEEEEEEEE-------------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-------------
T ss_pred ceEEEEeeee-------------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCcccccccccc
Confidence 3689999864 26999999999999999999999999999996 664321 01
Q ss_pred -------Cccc-------EEEECCEeCChhcc-----------------------CcEEEEcc-----------------
Q 006571 211 -------TVGG-------SITYNDHPYSKSLK-----------------------SKIGFVTQ----------------- 236 (640)
Q Consensus 211 -------~~~G-------~I~~~G~~~~~~~~-----------------------~~i~yV~Q----------------- 236 (640)
+..| .|.++|.++....+ +.+||.++
T Consensus 568 ~~~~~~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~ 647 (842)
T 2vf7_A 568 DHTAGSARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGE 647 (842)
T ss_dssp ----CCCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTC
T ss_pred ccccccccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCC
Confidence 1356 78999987632111 11122221
Q ss_pred -----CCCCCC------------------------C--------CCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcC
Q 006571 237 -----DDVLFP------------------------H--------LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 279 (640)
Q Consensus 237 -----~~~l~~------------------------~--------lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lg 279 (640)
+..+++ . +|+.|++.|.. .. ...+++.++++.+|
T Consensus 648 G~~~~~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~------~~---~~~~~~~~~L~~~g 718 (842)
T 2vf7_A 648 GWVMVELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFA------DE---SAIFRALDTLREVG 718 (842)
T ss_dssp SEEEETTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTT------TS---HHHHHHHHHHHHTT
T ss_pred CccchhhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhh------cc---hHHHHHHHHHHHcC
Confidence 212222 2 34555544421 11 12346788999999
Q ss_pred CCcc-ccccccCccCCcCCHHHHHHHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCC
Q 006571 280 LERC-QDTMIGGSFVRGVSGGERKRVCIGNEIIIN---PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 355 (640)
Q Consensus 280 L~~~-~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~---P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~ 355 (640)
|... .+ ..+..|||||||||+||++|+.+ |+||||||||+|||+.+...+++.|++++++|.|||+++|++
T Consensus 719 L~~~~l~-----~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl 793 (842)
T 2vf7_A 719 LGYLRLG-----QPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKM 793 (842)
T ss_dssp CTTSBTT-----CCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred CCccccc-----CCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCH
Confidence 9753 23 34578999999999999999996 799999999999999999999999999998899999999996
Q ss_pred CcHHHhccCEEEEE------cCCeEEEecChHHHH
Q 006571 356 SSRLFHKFDKLILL------GKGSLLYFGKASEAM 384 (640)
Q Consensus 356 ~~~i~~~~D~i~vL------~~G~iv~~G~~~~~~ 384 (640)
. .+ ..||+|++| ++|+|++.|+++++.
T Consensus 794 ~-~i-~~aDrii~L~p~~g~~~G~Iv~~g~~~el~ 826 (842)
T 2vf7_A 794 Q-VV-AASDWVLDIGPGAGEDGGRLVAQGTPAEVA 826 (842)
T ss_dssp H-HH-TTCSEEEEECSSSGGGCCSEEEEECHHHHT
T ss_pred H-HH-HhCCEEEEECCCCCCCCCEEEEEcCHHHHH
Confidence 5 45 789999999 799999999999874
No 63
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.97 E-value=2.3e-30 Score=304.02 Aligned_cols=208 Identities=25% Similarity=0.384 Sum_probs=156.9
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHH-----cCCCCC-Cccc--------
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLS-----GRLMEP-TVGG-------- 214 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~-----G~~~~~-~~~G-------- 214 (640)
.|+++|++. .+|+||||+|++|+++||+|+||||||||+++|. +.+... ...|
T Consensus 647 ~L~v~~l~~-------------~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~ 713 (993)
T 2ygr_A 647 QLTVVGARE-------------HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGL 713 (993)
T ss_dssp EEEEEEECS-------------TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCC
T ss_pred eEEEecCcc-------------ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCc
Confidence 588887741 3699999999999999999999999999999853 222110 0122
Q ss_pred -----EEEECCEeCChh-----------------------ccCcEEEEccCCCCC----------------------C--
Q 006571 215 -----SITYNDHPYSKS-----------------------LKSKIGFVTQDDVLF----------------------P-- 242 (640)
Q Consensus 215 -----~I~~~G~~~~~~-----------------------~~~~i~yV~Q~~~l~----------------------~-- 242 (640)
.|.+++.++... ..+.+||++|...+. +
T Consensus 714 ~~~~~~i~idq~pig~~~rs~paty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v 793 (993)
T 2ygr_A 714 DYLDKLVRIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDV 793 (993)
T ss_dssp TTCSEEECCCCSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCE
T ss_pred cccceEEEecCcccccCcccchhhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccc
Confidence 356666665210 012357777753221 1
Q ss_pred ------------------------------CCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCc-cccccccCc
Q 006571 243 ------------------------------HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGS 291 (640)
Q Consensus 243 ------------------------------~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~ 291 (640)
.+||.|++.|... .. ...++.++++.+||.. ..+.
T Consensus 794 ~~~ce~c~G~r~~~e~l~v~~~g~si~dvl~ltv~e~l~~~~~------~~---~~~~~~~~L~~lgL~~~~l~~----- 859 (993)
T 2ygr_A 794 YVPCEVCQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFEP------IA---GVHRYLRTLVDVGLGYVRLGQ----- 859 (993)
T ss_dssp EEECTTTTTCSBCGGGGGCCBTTBCHHHHHSSBHHHHHHHSTT------CH---HHHHHHHHHHHTTGGGSBTTC-----
T ss_pred eeeehhccccccchhhhhhhccCCCHHHHhhccHHHHHHHhhc------ch---HHHHHHHHHHHcCCCcccccC-----
Confidence 2577777776421 11 1234568899999975 3333
Q ss_pred cCCcCCHHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEE
Q 006571 292 FVRGVSGGERKRVCIGNEIIINP---SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLIL 368 (640)
Q Consensus 292 ~~~~LSGGqrqRv~IA~aL~~~P---~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~v 368 (640)
.+..|||||||||+||++|+.+| +||||||||+|||+.+...+++.|++++++|.|||+++|++. . ...||+|++
T Consensus 860 ~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~-~-i~~aDrIiv 937 (993)
T 2ygr_A 860 PAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLD-V-IKTSDWIID 937 (993)
T ss_dssp CGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-H-HTTCSEEEE
T ss_pred ccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-H-HHhCCEEEE
Confidence 45789999999999999999875 999999999999999999999999999888999999999965 3 478999999
Q ss_pred E------cCCeEEEecChHHHHH
Q 006571 369 L------GKGSLLYFGKASEAMA 385 (640)
Q Consensus 369 L------~~G~iv~~G~~~~~~~ 385 (640)
| ++|++++.|+++++..
T Consensus 938 L~p~gg~~~G~Iv~~G~~~el~~ 960 (993)
T 2ygr_A 938 LGPEGGAGGGTVVAQGTPEDVAA 960 (993)
T ss_dssp EESSSTTSCSEEEEEECHHHHHH
T ss_pred ECCCcCCCCCEEEEecCHHHHHh
Confidence 9 6899999999998764
No 64
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.96 E-value=5.9e-29 Score=270.48 Aligned_cols=203 Identities=15% Similarity=0.220 Sum_probs=147.2
Q ss_pred cceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC------------------------------------CCccc
Q 006571 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME------------------------------------PTVGG 214 (640)
Q Consensus 171 ~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~------------------------------------~~~~G 214 (640)
.+|+++++++.+| +++|+|||||||||||++|.+.+.. .+.+|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 5899999999999 9999999999999999999764421 12368
Q ss_pred EEEECCEeCCh----hc-cCcEEEEccCCCCCCCCCHHHHHHHHHhccC-----------------------CCCc----
Q 006571 215 SITYNDHPYSK----SL-KSKIGFVTQDDVLFPHLTVKETLTYAALLRL-----------------------PNTL---- 262 (640)
Q Consensus 215 ~I~~~G~~~~~----~~-~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~-----------------------~~~~---- 262 (640)
++.+||++++. .+ +..+++++|++.++.. +..+...|.-.... ....
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~ 206 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKH 206 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 89999999863 23 3348999999877643 66555554321100 0000
Q ss_pred ------------------------c------HHHHHHHHHHHHHHcCCCccc----------------cc---cccC---
Q 006571 263 ------------------------T------KQQKEKRAIDVINELGLERCQ----------------DT---MIGG--- 290 (640)
Q Consensus 263 ------------------------~------~~~~~~~v~~~l~~lgL~~~~----------------~t---~vg~--- 290 (640)
. .....+.+.+.++.+++++.. +. .+..
T Consensus 207 ~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 286 (415)
T 4aby_A 207 PTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPG 286 (415)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSS
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCC
Confidence 0 000112344555666654310 00 0110
Q ss_pred ---ccCCc-CCHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccC
Q 006571 291 ---SFVRG-VSGGERKRVCIGNEIIINP--SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFD 364 (640)
Q Consensus 291 ---~~~~~-LSGGqrqRv~IA~aL~~~P--~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D 364 (640)
..++. |||||||||+||++|+.+| ++|||||||+|||+.++..+.+.|++++ +|+|||+|||++ ++...||
T Consensus 287 ~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~--~~~~~~d 363 (415)
T 4aby_A 287 EELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLA--QIAARAH 363 (415)
T ss_dssp CCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCH--HHHTTCS
T ss_pred CcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcH--HHHhhcC
Confidence 11222 6999999999999999999 9999999999999999999999999997 589999999997 3568899
Q ss_pred EEEEE----cCCeEEEec
Q 006571 365 KLILL----GKGSLLYFG 378 (640)
Q Consensus 365 ~i~vL----~~G~iv~~G 378 (640)
++++| ++|+++...
T Consensus 364 ~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 364 HHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp EEEEEEEEEETTEEEEEE
T ss_pred eEEEEEEeccCCceEEEE
Confidence 99999 999987654
No 65
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.4e-31 Score=295.50 Aligned_cols=197 Identities=13% Similarity=0.104 Sum_probs=156.0
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCccc-E-EEECCEeCChh
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGG-S-ITYNDHPYSKS 226 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G-~-I~~~G~~~~~~ 226 (640)
+++++||+++| .++|+++++|++++|+||||||||||+|+|+|... +.+| + |.+||.
T Consensus 118 mi~~~nl~~~y--------------~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~--p~~G~~pI~vdg~----- 176 (460)
T 2npi_A 118 MKYIYNLHFML--------------EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL--KFNAYQPLYINLD----- 176 (460)
T ss_dssp HHHHHHHHHHH--------------HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH--HHHCCCCEEEECC-----
T ss_pred hhhhhhhhehh--------------hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCccc--ccCCceeEEEcCC-----
Confidence 57888888765 27999999999999999999999999999999653 4689 8 999983
Q ss_pred ccCcEEEEccCCC---CCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHH
Q 006571 227 LKSKIGFVTQDDV---LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (640)
Q Consensus 227 ~~~~i~yV~Q~~~---l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (640)
.++.++||||+.. +++.+||+||+ |+....... . ..+++.++++.+||.+..+ +.+||||||||
T Consensus 177 ~~~~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~--~---~~~~~~~ll~~~gl~~~~~-------~~~LSgGq~qr 243 (460)
T 2npi_A 177 PQQPIFTVPGCISATPISDILDAQLPT-WGQSLTSGA--T---LLHNKQPMVKNFGLERINE-------NKDLYLECISQ 243 (460)
T ss_dssp TTSCSSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSC--C---SSCCBCCEECCCCSSSGGG-------CHHHHHHHHHH
T ss_pred ccCCeeeeccchhhcccccccchhhhh-cccccccCc--c---hHHHHHHHHHHhCCCcccc-------hhhhhHHHHHH
Confidence 3677999999984 44567999999 654321110 0 1123455677788876554 36899999999
Q ss_pred HHHHHH--HhhCCCE----EEEeC-CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCc-----HHHhccCE-----E
Q 006571 304 VCIGNE--IIINPSL----LFLDE-PTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSS-----RLFHKFDK-----L 366 (640)
Q Consensus 304 v~IA~a--L~~~P~i----LlLDE-PTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~-----~i~~~~D~-----i 366 (640)
|+|||+ |+.+|++ ||||| ||++||+. ...+.+.+++ .++|+|+++|+... .+.++||+ |
T Consensus 244 lalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~---~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~v 319 (460)
T 2npi_A 244 LGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEK---LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNI 319 (460)
T ss_dssp HHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHH---TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGE
T ss_pred HHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHH---hCCCEEEEEccCchhhhHHHHHHhcccccCCEE
Confidence 999999 9999999 99999 99999999 5555555543 37899999999761 45578999 9
Q ss_pred EEEc-CCeEEEecChHHHH
Q 006571 367 ILLG-KGSLLYFGKASEAM 384 (640)
Q Consensus 367 ~vL~-~G~iv~~G~~~~~~ 384 (640)
++|+ +|+++ .|+++++.
T Consensus 320 i~l~k~G~iv-~g~~~~~~ 337 (460)
T 2npi_A 320 FFIPKLDGVS-AVDDVYKR 337 (460)
T ss_dssp EEECCCTTCC-CCCHHHHH
T ss_pred EEEeCCCcEE-ECCHHHHh
Confidence 9999 99999 99987663
No 66
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.93 E-value=1.3e-25 Score=241.24 Aligned_cols=84 Identities=26% Similarity=0.425 Sum_probs=77.0
Q ss_pred ccCCcCCHHHHHHHHHHHHHh------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccC
Q 006571 291 SFVRGVSGGERKRVCIGNEII------INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFD 364 (640)
Q Consensus 291 ~~~~~LSGGqrqRv~IA~aL~------~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D 364 (640)
..+.+|||||||||+||+||+ .+|++|||||||+|||+.++..+++.|+++.+.|+|||+++|++. ..+.||
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~--~~~~~d 352 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDRE--FSEAFD 352 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHH--HHTTCS
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchH--HHHhCC
Confidence 356789999999999999999 699999999999999999999999999999888999999999974 367899
Q ss_pred EEEEEcCCeEEE
Q 006571 365 KLILLGKGSLLY 376 (640)
Q Consensus 365 ~i~vL~~G~iv~ 376 (640)
++++|++|+++.
T Consensus 353 ~~~~l~~G~i~~ 364 (365)
T 3qf7_A 353 RKLRITGGVVVN 364 (365)
T ss_dssp CEEEEETTEEC-
T ss_pred EEEEEECCEEEe
Confidence 999999999874
No 67
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.92 E-value=6.6e-29 Score=246.86 Aligned_cols=143 Identities=19% Similarity=0.284 Sum_probs=101.3
Q ss_pred ccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC---hhccCcEEEEccCCCCCCCC
Q 006571 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---KSLKSKIGFVTQDDVLFPHL 244 (640)
Q Consensus 168 ~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~---~~~~~~i~yV~Q~~~l~~~l 244 (640)
+++.+|+|| ++||+++|+||||||||||+++|+|. . +.+|+|.. .++. ...++.+|||+|++
T Consensus 11 g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~--p~~G~I~~--~~~~~~~~~~~~~ig~v~q~~------ 75 (208)
T 3b85_A 11 GQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-A--LQSKQVSR--IILTRPAVEAGEKLGFLPGTL------ 75 (208)
T ss_dssp HHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-H--HHTTSCSE--EEEEECSCCTTCCCCSSCC--------
T ss_pred hHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-C--CcCCeeee--EEecCCchhhhcceEEecCCH------
Confidence 456799996 89999999999999999999999995 3 45898842 2221 23467899999986
Q ss_pred CHHHHH-HHHHhc--cCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 006571 245 TVKETL-TYAALL--RLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 321 (640)
Q Consensus 245 TV~Enl-~~~~~~--~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDE 321 (640)
+||+ .+.... ...... ..++++++++. ++ ||||||+|||||+.+|++|||||
T Consensus 76 --~enl~~~~~~~~~~~~~~~----~~~~~~~~l~~-gl------------------Gq~qrv~lAraL~~~p~lllLDE 130 (208)
T 3b85_A 76 --NEKIDPYLRPLHDALRDMV----EPEVIPKLMEA-GI------------------VEVAPLAYMRGRTLNDAFVILDE 130 (208)
T ss_dssp ------CTTTHHHHHHHTTTS----CTTHHHHHHHT-TS------------------EEEEEGGGGTTCCBCSEEEEECS
T ss_pred --HHHHHHHHHHHHHHHHHhc----cHHHHHHHHHh-CC------------------chHHHHHHHHHHhcCCCEEEEeC
Confidence 4454 221100 000000 01234445543 22 99999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCC
Q 006571 322 PTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 356 (640)
Q Consensus 322 PTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~ 356 (640)
||+| ++..+.+.|+++ ++|+||| +||++.
T Consensus 131 Pts~----~~~~l~~~l~~l-~~g~tii-vtHd~~ 159 (208)
T 3b85_A 131 AQNT----TPAQMKMFLTRL-GFGSKMV-VTGDIT 159 (208)
T ss_dssp GGGC----CHHHHHHHHTTB-CTTCEEE-EEEC--
T ss_pred Cccc----cHHHHHHHHHHh-cCCCEEE-EECCHH
Confidence 9999 888999999988 6689999 999964
No 68
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.92 E-value=2.9e-25 Score=234.43 Aligned_cols=206 Identities=18% Similarity=0.180 Sum_probs=129.2
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC---------------------------------------------
Q 006571 174 NGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLM--------------------------------------------- 208 (640)
Q Consensus 174 ~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~--------------------------------------------- 208 (640)
+++++++.+| +++|+||||||||||+++|...+-
T Consensus 16 ~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~ 94 (322)
T 1e69_A 16 RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVA 94 (322)
T ss_dssp SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEE
T ss_pred CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEE
Confidence 4678999999 999999999999999999984320
Q ss_pred ---CCCcccEEEECCEeCCh----hccCcEEEEccCCCCCCCCCHHHHHHHHHhccC------CCCc----cHHHHHHHH
Q 006571 209 ---EPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRL------PNTL----TKQQKEKRA 271 (640)
Q Consensus 209 ---~~~~~G~I~~~G~~~~~----~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~------~~~~----~~~~~~~~v 271 (640)
..+.+|.+.+||.+... .....+++.+|+..+++.-++.+++......+. +... ..+...+..
T Consensus 95 r~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~p~~rr~~ld~~~~~~~~~~~y~rv~e~~ 174 (322)
T 1e69_A 95 RELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNASPEELRLESSKHPTSLVPRGSYQRVNESF 174 (322)
T ss_dssp EEEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC---------------------CHHHHHHH
T ss_pred EEEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 01124688999988752 233456666665544433345554432211000 0000 000011111
Q ss_pred HHHHHHc----------------CCCccccccc-----cCccCCcCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCC
Q 006571 272 IDVINEL----------------GLERCQDTMI-----GGSFVRGVSGGERKRVCIGNEII----INPSLLFLDEPTSGL 326 (640)
Q Consensus 272 ~~~l~~l----------------gL~~~~~t~v-----g~~~~~~LSGGqrqRv~IA~aL~----~~P~iLlLDEPTsgL 326 (640)
.+++..+ -++...+..+ .+..+..||||||||++||++|+ .+|++|||||||++|
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~L 254 (322)
T 1e69_A 175 NRFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPL 254 (322)
T ss_dssp HHHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSC
T ss_pred HHHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCC
Confidence 1111100 0011111111 12235689999999999999997 588999999999999
Q ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEE--EEEcCCe-EEEecChHHH
Q 006571 327 DSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKL--ILLGKGS-LLYFGKASEA 383 (640)
Q Consensus 327 D~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i--~vL~~G~-iv~~G~~~~~ 383 (640)
|+..+..+.+.|+++. +|.|||++||++. +.+.||++ ++|.+|+ .+.....++.
T Consensus 255 D~~~~~~l~~~l~~~~-~~~~vi~~tH~~~--~~~~~d~~~~v~~~~g~s~~~~~~~~~~ 311 (322)
T 1e69_A 255 DDYNAERFKRLLKENS-KHTQFIVITHNKI--VMEAADLLHGVTMVNGVSAIVPVEVEKI 311 (322)
T ss_dssp CHHHHHHHHHHHHHHT-TTSEEEEECCCTT--GGGGCSEEEEEEESSSCEEEEECCC---
T ss_pred CHHHHHHHHHHHHHhc-CCCeEEEEECCHH--HHhhCceEEEEEEeCCEEEEEEEEcchh
Confidence 9999999999999985 4889999999953 56889987 8888885 4455555553
No 69
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.92 E-value=1.3e-29 Score=265.30 Aligned_cols=169 Identities=18% Similarity=0.256 Sum_probs=135.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhcc
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~ 228 (640)
.|+++||+|.| + +++|+|+|++|++|++++|+||||||||||+++|+|.+ +|+|
T Consensus 101 ~i~~~~vs~~y--------~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~-----~G~I------------ 154 (305)
T 2v9p_A 101 FFNYQNIELIT--------F-INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL-----GGSV------------ 154 (305)
T ss_dssp HHHHTTCCHHH--------H-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH-----TCEE------------
T ss_pred eEEEEEEEEEc--------C-hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc-----CceE------------
Confidence 48899999987 2 56999999999999999999999999999999999853 6887
Q ss_pred CcEEEEccCCCCCCCCCHHH-HHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHH
Q 006571 229 SKIGFVTQDDVLFPHLTVKE-TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (640)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~E-nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (640)
++|++|++.+|+. |++| ||.|.. ..+. .+.+.++.+ |++..+ ...|||||||| |
T Consensus 155 --~~~v~q~~~lf~~-ti~~~ni~~~~------~~~~-----~~~~~i~~~-L~~gld-------g~~LSgGqkQR---A 209 (305)
T 2v9p_A 155 --LSFANHKSHFWLA-SLADTRAALVD------DATH-----ACWRYFDTY-LRNALD-------GYPVSIDRKHK---A 209 (305)
T ss_dssp --ECGGGTTSGGGGG-GGTTCSCEEEE------EECH-----HHHHHHHHT-TTGGGG-------TCCEECCCSSC---C
T ss_pred --EEEecCccccccc-cHHHHhhccCc------cccH-----HHHHHHHHH-hHccCC-------ccCcCHHHHHH---H
Confidence 4578899988874 8887 887642 1121 355666664 565555 25799999999 9
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHHHH
Q 006571 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYF 387 (640)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~~f 387 (640)
|||+++|+||| ||+||+.++..+.. .+|++.. .+.||+| +|++|++++.|+++++..+|
T Consensus 210 RAll~~p~iLl----Ts~LD~~~~~~i~~--------------ltH~~~~--~~~aD~i-vl~~G~iv~~g~~~el~~~y 268 (305)
T 2v9p_A 210 AVQIKAPPLLV----TSNIDVQAEDRYLY--------------LHSRVQT--FRFEQPC-TDESGEQPFNITDADWKSFF 268 (305)
T ss_dssp CCEECCCCEEE----EESSCSTTCGGGGG--------------GTTTEEE--EECCCCC-CCC---CCCCCCHHHHHHHH
T ss_pred HHHhCCCCEEE----ECCCCHHHHHHHHH--------------HhCCHHH--HHhCCEE-EEeCCEEEEeCCHHHHHHHH
Confidence 99999999999 99999999888752 2898753 5789999 99999999999999996666
Q ss_pred Hh
Q 006571 388 SS 389 (640)
Q Consensus 388 ~~ 389 (640)
..
T Consensus 269 ~~ 270 (305)
T 2v9p_A 269 VR 270 (305)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 70
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.91 E-value=1.2e-25 Score=215.92 Aligned_cols=143 Identities=13% Similarity=0.155 Sum_probs=100.4
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCC-CCCCHHHHHHHH
Q 006571 175 GITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLF-PHLTVKETLTYA 253 (640)
Q Consensus 175 ~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~-~~lTV~Enl~~~ 253 (640)
||||++++||+++|+||||||||||+|++.+ |...+++. .+ .++++|++.-. ..-++.+++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~--------~~~~~~~d----~~---~g~~~~~~~~~~~~~~~~~~~~-- 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK--------PTEVISSD----FC---RGLMSDDENDQTVTGAAFDVLH-- 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC--------GGGEEEHH----HH---HHHHCSSTTCGGGHHHHHHHHH--
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc--------CCeEEccH----HH---HHHhcCcccchhhHHHHHHHHH--
Confidence 6899999999999999999999999999753 11112111 11 25667764210 0001122111
Q ss_pred HhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH----
Q 006571 254 ALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST---- 329 (640)
Q Consensus 254 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~---- 329 (640)
..... ....|.....+. ....|||||||++|||+++.+|++|+|||||++||+.
T Consensus 64 ---------------~~~~~-~~~~g~~~~~~~------~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R 121 (171)
T 4gp7_A 64 ---------------YIVSK-RLQLGKLTVVDA------TNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNR 121 (171)
T ss_dssp ---------------HHHHH-HHHTTCCEEEES------CCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTC
T ss_pred ---------------HHHHH-HHhCCCeEEEEC------CCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcc
Confidence 11111 122344433332 2346999999999999999999999999999999999
Q ss_pred ------------HHHHHHHHHHHHHHCCCEEEEEeCCCC
Q 006571 330 ------------TALRIVQMLQDIAEAGKTVVTTIHQPS 356 (640)
Q Consensus 330 ------------s~~~i~~~L~~l~~~g~TvI~~tH~~~ 356 (640)
....+.+.|++++++|.|+|+++|++.
T Consensus 122 ~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~ 160 (171)
T 4gp7_A 122 TDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPE 160 (171)
T ss_dssp SSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHH
T ss_pred cCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHH
Confidence 558899999988877999999999964
No 71
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.90 E-value=1e-26 Score=252.91 Aligned_cols=170 Identities=15% Similarity=0.173 Sum_probs=135.0
Q ss_pred ccceeceEEEEeCCe--------------------EEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccC
Q 006571 170 KDILNGITGSVNPGE--------------------VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229 (640)
Q Consensus 170 ~~iL~~vs~~i~~Ge--------------------~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~ 229 (640)
+.+|+|||+++++|+ ++||+||||||||||+|+|+|... +.+|+|.++|.+.. +
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~--p~~GsI~~~g~~~t---~- 109 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGN--EEEGAAKTGVVEVT---M- 109 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCT--TSTTSCCCCC-------C-
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCC--ccCceEEECCeecc---e-
Confidence 469999999999999 999999999999999999999653 46899999998753 2
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHH--HHHHHHHH
Q 006571 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG--ERKRVCIG 307 (640)
Q Consensus 230 ~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG--qrqRv~IA 307 (640)
.+|++|++ .++.+|+.||+.++. + +.+++++++.+++.+.. .. +. |||| ||||+.||
T Consensus 110 -~~~v~q~~-~~~~ltv~D~~g~~~----~--------~~~~~~~L~~~~L~~~~-~~-----~~-lS~G~~~kqrv~la 168 (413)
T 1tq4_A 110 -ERHPYKHP-NIPNVVFWDLPGIGS----T--------NFPPDTYLEKMKFYEYD-FF-----II-ISATRFKKNDIDIA 168 (413)
T ss_dssp -CCEEEECS-SCTTEEEEECCCGGG----S--------SCCHHHHHHHTTGGGCS-EE-----EE-EESSCCCHHHHHHH
T ss_pred -eEEecccc-ccCCeeehHhhcccc----h--------HHHHHHHHHHcCCCccC-Ce-----EE-eCCCCccHHHHHHH
Confidence 27899985 577889999876542 1 12367888889887542 22 23 9999 99999999
Q ss_pred HHHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-----HCC----CEEEEEeCCCCc-HHHhccCEE
Q 006571 308 NEIII----------NPSLLFLDEPTSGLDSTTALRIVQMLQDIA-----EAG----KTVVTTIHQPSS-RLFHKFDKL 366 (640)
Q Consensus 308 ~aL~~----------~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~-----~~g----~TvI~~tH~~~~-~i~~~~D~i 366 (640)
++|+. +|++++|||||+|||+.++.++++.|+++. +.| .+|++++|+... .+.+++|+|
T Consensus 169 ~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 169 KAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp HHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred HHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 99999 999999999999999999999999999985 322 678899998653 244555554
No 72
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.89 E-value=2.2e-24 Score=209.03 Aligned_cols=145 Identities=19% Similarity=0.155 Sum_probs=101.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC---h-hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---K-SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN 260 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~---~-~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~ 260 (640)
.++|+||||||||||+++|+|.+. |.++|.+.. . ..++++||++|+. ++.+++ ++ +.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-------i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~~~~-~~---~~-- 62 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-------KRAIGFWTEEVRDPETKKRTGFRIITT------EGKKKI-FS---SK-- 62 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-------GGEEEEEEEEEC------CCEEEEEET------TCCEEE-EE---ET--
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-------CcCCCEEhhhhccccccceeEEEeecC------cHHHHH-HH---hh--
Confidence 589999999999999999999542 445554431 1 3457899999976 222332 10 00
Q ss_pred CccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHH-----HhhCCCEEEEeC--CCCCCCHHHHHH
Q 006571 261 TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE-----IIINPSLLFLDE--PTSGLDSTTALR 333 (640)
Q Consensus 261 ~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~a-----L~~~P~iLlLDE--PTsgLD~~s~~~ 333 (640)
+... +..+ +.++..||||||||++||++ |+.+|++|+||| ||++||+.....
T Consensus 63 ------------------~~~~--~~~~-~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~ 121 (178)
T 1ye8_A 63 ------------------FFTS--KKLV-GSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDL 121 (178)
T ss_dssp ------------------TCCC--SSEE-TTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHH
T ss_pred ------------------cCCc--cccc-cccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHH
Confidence 0100 0111 23456899999999999996 999999999999 999999999999
Q ss_pred HHHHHHHHHHCCCEEEEEeCC--CCcHHHhccCEEEEEcCCeEEE
Q 006571 334 IVQMLQDIAEAGKTVVTTIHQ--PSSRLFHKFDKLILLGKGSLLY 376 (640)
Q Consensus 334 i~~~L~~l~~~g~TvI~~tH~--~~~~i~~~~D~i~vL~~G~iv~ 376 (640)
+.+.+++ .+.|+|+++|+ ....+..++|+ .+|++++
T Consensus 122 l~~~l~~---~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 122 VRQIMHD---PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp HHHHHTC---TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred HHHHHhc---CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 9988875 47789999972 23456667887 5677765
No 73
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.88 E-value=7.8e-27 Score=230.64 Aligned_cols=183 Identities=17% Similarity=0.154 Sum_probs=119.0
Q ss_pred ccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHH
Q 006571 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVK 247 (640)
Q Consensus 168 ~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~ 247 (640)
+..++++| .+|++||+++|+||||||||||+|+|+|.+. ...+.+.+.+.+.....++.++|++|++.+|+.+|+.
T Consensus 7 ~~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~--~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 7 DTKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP--NLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp --------------CCCEEEEECSTTSSHHHHHHHHHHHST--TCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHT
T ss_pred CCCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC--ceEEcccccccCCcccccCCCeeEecCHHHHHHHHhc
Confidence 34568888 7999999999999999999999999999653 2222222222222222356799999998888888888
Q ss_pred HHHHHHHhccC---CCCccHHHHHHHHHHH------HHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEE
Q 006571 248 ETLTYAALLRL---PNTLTKQQKEKRAIDV------INELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 318 (640)
Q Consensus 248 Enl~~~~~~~~---~~~~~~~~~~~~v~~~------l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLl 318 (640)
+++........ ....+.++.++++++. ++.+|+.+..+. .++.|| +|+.+|++++
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----~~~~lS-----------~l~~~p~~~~ 146 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKT-----MPEAVT-----------VFLAPPSWQD 146 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHH-----CTTSEE-----------EEEECSCHHH
T ss_pred CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHh-----cCCcEE-----------EEEECCCHHH
Confidence 87642211000 0123344444555554 444444433332 234566 8999999999
Q ss_pred EeCCCCCC----CHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCcHHHhccCEEEEEcC
Q 006571 319 LDEPTSGL----DSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (640)
Q Consensus 319 LDEPTsgL----D~~s~~~i~~~L~~l~~-~g~TvI~~tH~~~~~i~~~~D~i~vL~~ 371 (640)
|||||+|+ |+..+.++.+.++++.+ .|.|+|+++|++. ++.++||+|++|.+
T Consensus 147 LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~d~i~~l~~ 203 (207)
T 1znw_A 147 LQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLE-SACAELVSLLVGTA 203 (207)
T ss_dssp HHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHH-HHHHHHHHHHC---
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHH-HHHHHHHHHHHhcc
Confidence 99999998 78899999999999975 4899999999975 58889999999853
No 74
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.87 E-value=2.1e-25 Score=244.85 Aligned_cols=191 Identities=14% Similarity=0.109 Sum_probs=151.5
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCE---eCC
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH---PYS 224 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~---~~~ 224 (640)
..++++|+++.|. .+..+|+++ ++|.+|++++|+||||||||||+++|+|... +..|.|.++|+ ++.
T Consensus 130 ~~l~~~~v~~~~~-------tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~--~~~G~i~~~G~r~~ev~ 199 (438)
T 2dpy_A 130 NPLQRTPIEHVLD-------TGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTR--ADVIVVGLIGERGREVK 199 (438)
T ss_dssp CTTTSCCCCSBCC-------CSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSC--CSEEEEEEESCCHHHHH
T ss_pred CceEEeccceecC-------CCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccC--CCeEEEEEeceecHHHH
Confidence 3578899988772 145799999 9999999999999999999999999999643 45899999998 443
Q ss_pred h---------hccCcEEEEccC-CCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCC
Q 006571 225 K---------SLKSKIGFVTQD-DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVR 294 (640)
Q Consensus 225 ~---------~~~~~i~yV~Q~-~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~ 294 (640)
+ .+++.++||+|+ +.+++.+||.+|+.+.+..... ..+++ ....| ...
T Consensus 200 ~~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~-------~~~~v---------~~~ld------~l~ 257 (438)
T 2dpy_A 200 DFIENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRD-------RGQHV---------LLIMD------SLT 257 (438)
T ss_dssp HHHHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHT-------TTCEE---------EEEEE------CHH
T ss_pred HHHHhhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHh-------CCCCH---------HHHHH------hHH
Confidence 2 256789999995 5667788999999886532100 00000 01111 135
Q ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH---C-CC-----EEEEEeCCCCcHHHhccCE
Q 006571 295 GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE---A-GK-----TVVTTIHQPSSRLFHKFDK 365 (640)
Q Consensus 295 ~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~---~-g~-----TvI~~tH~~~~~i~~~~D~ 365 (640)
.+|+|| |||+|| +.+|++ |+|||+.+...+.+.++++.+ + |+ ||++++||++ ...||+
T Consensus 258 ~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~iad~ 324 (438)
T 2dpy_A 258 RYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIADS 324 (438)
T ss_dssp HHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHHHH
T ss_pred HHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhhce
Confidence 699999 999999 889988 999999999999999999866 3 64 9999999987 367999
Q ss_pred EEEEcCCeEEEecChHHH
Q 006571 366 LILLGKGSLLYFGKASEA 383 (640)
Q Consensus 366 i~vL~~G~iv~~G~~~~~ 383 (640)
+++|.+|+++..|++.++
T Consensus 325 v~~l~dG~Ivl~~~~~~~ 342 (438)
T 2dpy_A 325 ARAILDGHIVLSRRLAEA 342 (438)
T ss_dssp HHHHSSEEEEECHHHHHT
T ss_pred EEEEeCcEEEEeCCHHHc
Confidence 999999999999998775
No 75
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.87 E-value=7.5e-24 Score=221.96 Aligned_cols=173 Identities=16% Similarity=0.168 Sum_probs=131.7
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--------hc--cCcEEEEccCCC-CC
Q 006571 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--------SL--KSKIGFVTQDDV-LF 241 (640)
Q Consensus 173 L~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--------~~--~~~i~yV~Q~~~-l~ 241 (640)
++++|+++++|++++|+||||||||||++.|+|.+. +.+|+|.++|.++.+ .+ +..++|++|++. ++
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~--~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~ 167 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK--NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 167 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH--HcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccC
Confidence 457899999999999999999999999999999654 358999999998742 12 346999999998 88
Q ss_pred CCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCC--EEEE
Q 006571 242 PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPS--LLFL 319 (640)
Q Consensus 242 ~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~--iLlL 319 (640)
|.+||+||+.++.... .. ..+++.+|+.+..+.. +.+|| |||++|||+|+.+|+ +|+|
T Consensus 168 ~~~~v~e~l~~~~~~~--~d----------~~lldt~gl~~~~~~~-----~~eLS---kqr~~iaral~~~P~e~lLvL 227 (302)
T 3b9q_A 168 AATVLSKAVKRGKEEG--YD----------VVLCDTSGRLHTNYSL-----MEELI---ACKKAVGKIVSGAPNEILLVL 227 (302)
T ss_dssp HHHHHHHHHHHHHHTT--CS----------EEEECCCCCSSCCHHH-----HHHHH---HHHHHHHTTSTTCCSEEEEEE
T ss_pred HHHHHHHHHHHHHHcC--Cc----------chHHhcCCCCcchhHH-----HHHHH---HHHHHHHHhhccCCCeeEEEE
Confidence 8899999999864211 00 1245566776655543 45799 999999999999999 9999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEeCCCC--------cHHHhccCEEEEEcCCeE
Q 006571 320 DEPTSGLDSTTALRIVQMLQDIA-EAGKTVVTTIHQPS--------SRLFHKFDKLILLGKGSL 374 (640)
Q Consensus 320 DEPTsgLD~~s~~~i~~~L~~l~-~~g~TvI~~tH~~~--------~~i~~~~D~i~vL~~G~i 374 (640)
| ||+|||+.++ ++++. +.|.|+|++||... ..+....+.|.++..|+.
T Consensus 228 D-ptsglD~~~~------~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 228 D-GNTGLNMLPQ------AREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp E-GGGGGGGHHH------HHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred e-CCCCcCHHHH------HHHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 9 9999999865 24454 35899999999422 123344567888888864
No 76
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.86 E-value=2.4e-21 Score=226.54 Aligned_cols=108 Identities=25% Similarity=0.400 Sum_probs=94.3
Q ss_pred HHHHHHHHHcCCCcc-ccccccCccCCcCCHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCC
Q 006571 269 KRAIDVINELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNEIIINP--SLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 345 (640)
Q Consensus 269 ~~v~~~l~~lgL~~~-~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P--~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g 345 (640)
++++ .+..+||.+. .+. .+..|||||||||+||++|..+| .+|+|||||++||+.....+++.|++|.+.|
T Consensus 358 ~rl~-~L~~vGL~~l~l~r-----~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G 431 (842)
T 2vf7_A 358 KRLD-VLLHLGLGYLGLDR-----STPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGG 431 (842)
T ss_dssp HHHH-HHHHTTCTTSBTTC-----BGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTT
T ss_pred HHHH-HHHhCCCCcCCccC-----CcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcC
Confidence 3444 5778899754 343 45789999999999999999999 5999999999999999999999999998889
Q ss_pred CEEEEEeCCCCcHHHhccCEEEEE------cCCeEEEecChHHHH
Q 006571 346 KTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEAM 384 (640)
Q Consensus 346 ~TvI~~tH~~~~~i~~~~D~i~vL------~~G~iv~~G~~~~~~ 384 (640)
.|||+|+|++. +...||+|++| ++|++++.|+++++.
T Consensus 432 ~TVIvVeHdl~--~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~ 474 (842)
T 2vf7_A 432 NSLFVVEHDLD--VIRRADWLVDVGPEAGEKGGEILYSGPPEGLK 474 (842)
T ss_dssp CEEEEECCCHH--HHTTCSEEEEECSSSGGGCCSEEEEECGGGGG
T ss_pred CEEEEEcCCHH--HHHhCCEEEEeCCCcccCCCEEEEecCHHHHH
Confidence 99999999974 45789999999 799999999998764
No 77
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.85 E-value=4.2e-23 Score=220.74 Aligned_cols=172 Identities=16% Similarity=0.184 Sum_probs=132.3
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--------hc--cCcEEEEccCCC-CCC
Q 006571 174 NGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--------SL--KSKIGFVTQDDV-LFP 242 (640)
Q Consensus 174 ~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--------~~--~~~i~yV~Q~~~-l~~ 242 (640)
+++|+++++|++++|+||||||||||++.|+|.+. +.+|+|.++|.++.+ .+ +..|+|++|++. ++|
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~--~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p 225 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK--NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA 225 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcc--ccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccCh
Confidence 46889999999999999999999999999999654 358999999998742 12 356999999998 888
Q ss_pred CCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCC--EEEEe
Q 006571 243 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPS--LLFLD 320 (640)
Q Consensus 243 ~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~--iLlLD 320 (640)
.+||+||+.++.... .. ..+++.+|+.+..+.. +.+|| |||++|||+|+.+|+ +|+||
T Consensus 226 ~~tv~e~l~~~~~~~--~d----------~~lldt~Gl~~~~~~~-----~~eLS---kqr~~iaral~~~P~e~lLvLD 285 (359)
T 2og2_A 226 ATVLSKAVKRGKEEG--YD----------VVLCDTSGRLHTNYSL-----MEELI---ACKKAVGKIVSGAPNEILLVLD 285 (359)
T ss_dssp HHHHHHHHHHHHHTT--CS----------EEEEECCCCSSCCHHH-----HHHHH---HHHHHHHHHSTTCCSEEEEEEE
T ss_pred hhhHHHHHHHHHhCC--CH----------HHHHHhcCCChhhhhH-----HHHHH---HHHHHHHHHHhcCCCceEEEEc
Confidence 899999999864311 00 1234566776655443 45799 999999999999999 99999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCC--------cHHHhccCEEEEEcCCeE
Q 006571 321 EPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPS--------SRLFHKFDKLILLGKGSL 374 (640)
Q Consensus 321 EPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~tH~~~--------~~i~~~~D~i~vL~~G~i 374 (640)
||+|||+.++. +++.+ .|.|+|++||... +.+....+.|.++..|+.
T Consensus 286 -pttglD~~~~~------~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 286 -GNTGLNMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp -GGGGGGGHHHH------HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred -CCCCCCHHHHH------HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 99999998653 34443 5899999999421 123344567888887753
No 78
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.85 E-value=4.4e-21 Score=205.33 Aligned_cols=86 Identities=15% Similarity=0.146 Sum_probs=77.4
Q ss_pred CccCC-cCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHH
Q 006571 290 GSFVR-GVSGGERKRVCIGNEII---------INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRL 359 (640)
Q Consensus 290 ~~~~~-~LSGGqrqRv~IA~aL~---------~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i 359 (640)
+..++ .||||||||++||++|+ .+|+||||||||++||+..+..+++.|+++. .|+|++||. ..
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~~-- 332 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-AP-- 332 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-CT--
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-cc--
Confidence 44566 79999999999999999 8999999999999999999999999998763 799999994 32
Q ss_pred HhccCEEEEEcCCeEEEecChHHH
Q 006571 360 FHKFDKLILLGKGSLLYFGKASEA 383 (640)
Q Consensus 360 ~~~~D~i~vL~~G~iv~~G~~~~~ 383 (640)
.+|++++|++|+++..|+++++
T Consensus 333 --~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 --GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp --TCSEEEEEETTEEEECCCTTTS
T ss_pred --cCCEEEEEECCEEEecCCHHHH
Confidence 7999999999999999998875
No 79
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.84 E-value=2.2e-23 Score=215.03 Aligned_cols=146 Identities=19% Similarity=0.231 Sum_probs=95.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh-hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCcc
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLT 263 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~ 263 (640)
.++|+||||||||||+|+|+|... +.+|+|.++|+++.. ..++.++|++|++.+++.+||.||+.|+...... .
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~--~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~-~-- 78 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV--SRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNE-N-- 78 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC--------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCT-T--
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC--CCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccH-H--
Confidence 479999999999999999999653 458999999998754 3457799999999999999999999987543211 1
Q ss_pred HHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 006571 264 KQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 343 (640)
Q Consensus 264 ~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~ 343 (640)
..+.+.+.++ .+..+.. ...||||||||++|||+++. +++||||+.|||+.. .+.++.+.+
T Consensus 79 ---~~~~i~~~~~----~~~~~~~-----~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~ 139 (270)
T 3sop_A 79 ---CWEPIEKYIN----EQYEKFL-----KEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSK 139 (270)
T ss_dssp ---CSHHHHHHHH----HHHHHHH-----HHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHT
T ss_pred ---HHHHHHHHHH----HHHHhhh-----HHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHh
Confidence 1122333332 1222222 35799999999999999876 999999999999987 455566665
Q ss_pred CCCEEEEEeCCC
Q 006571 344 AGKTVVTTIHQP 355 (640)
Q Consensus 344 ~g~TvI~~tH~~ 355 (640)
. .+||+++|..
T Consensus 140 ~-~~vI~Vi~K~ 150 (270)
T 3sop_A 140 V-VNIIPVIAKA 150 (270)
T ss_dssp T-SEEEEEETTG
T ss_pred c-CcEEEEEecc
Confidence 5 8999999874
No 80
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.84 E-value=1.1e-22 Score=215.59 Aligned_cols=131 Identities=20% Similarity=0.256 Sum_probs=106.3
Q ss_pred ceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--hccCcEEEEccCCCCCCCCCHHHH
Q 006571 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPHLTVKET 249 (640)
Q Consensus 172 iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--~~~~~i~yV~Q~~~l~~~lTV~En 249 (640)
+++++|+.+++|++++|+||||||||||+++|+|.+. +.+|.|.++|.+... ..++.+++++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~--~~~g~i~i~~~~e~~~~~~~~~i~~~~-------------- 223 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIP--KEERIISIEDTEEIVFKHHKNYTQLFF-------------- 223 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSC--TTSCEEEEESSCCCCCSSCSSEEEEEC--------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCc--CCCcEEEECCeeccccccchhEEEEEe--------------
Confidence 8999999999999999999999999999999998653 468999999865211 1233344332
Q ss_pred HHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 006571 250 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST 329 (640)
Q Consensus 250 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~ 329 (640)
+ |||+||++||+||..+|++|+|||||+
T Consensus 224 ---------------------------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~----- 251 (330)
T 2pt7_A 224 ---------------------------------------------G--GNITSADCLKSCLRMRPDRIILGELRS----- 251 (330)
T ss_dssp ---------------------------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCS-----
T ss_pred ---------------------------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCCh-----
Confidence 1 899999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeE
Q 006571 330 TALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (640)
Q Consensus 330 s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~i 374 (640)
.++.+.|+.+...+.|+|+++|+++ +.+.|||+++|.+|+.
T Consensus 252 --~e~~~~l~~~~~g~~tvi~t~H~~~--~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 252 --SEAYDFYNVLCSGHKGTLTTLHAGS--SEEAFIRLANMSSSNS 292 (330)
T ss_dssp --THHHHHHHHHHTTCCCEEEEEECSS--HHHHHHHHHHHHHTSG
T ss_pred --HHHHHHHHHHhcCCCEEEEEEcccH--HHHHhhhheehhcCCc
Confidence 2456777777653458999999976 5688999999988853
No 81
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.84 E-value=2.4e-25 Score=222.36 Aligned_cols=172 Identities=16% Similarity=0.149 Sum_probs=111.8
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh-----hccCcEEEEccCCCCCCCC
Q 006571 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----SLKSKIGFVTQDDVLFPHL 244 (640)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-----~~~~~i~yV~Q~~~l~~~l 244 (640)
..-|+||||+|++|++++|+||||||||||+++|+|.. | |+|.+ |.+... ..++.++|++|++.+|+.+
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~--p---G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 83 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF--P---NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDK 83 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS--T---TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC--C---CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHh
Confidence 45799999999999999999999999999999999954 2 88999 776521 2356799999998776543
Q ss_pred C-HHHHHHHHHhccCC-CCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHH-----HHHHhhCCCEE
Q 006571 245 T-VKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI-----GNEIIINPSLL 317 (640)
Q Consensus 245 T-V~Enl~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I-----A~aL~~~P~iL 317 (640)
+ +.+++.+.. .... ...+. +.++++++...+ ..+. ..||||||||++| +++|+.+|+++
T Consensus 84 ~~~~~~l~~~~-~~~~~~g~~~----~~i~~~l~~~~~-----~il~----~~lsggq~qR~~i~~~~~~~~ll~~~~~~ 149 (218)
T 1z6g_A 84 LKNEDFLEYDN-YANNFYGTLK----SEYDKAKEQNKI-----CLFE----MNINGVKQLKKSTHIKNALYIFIKPPSTD 149 (218)
T ss_dssp HHTTCEEEEEE-ETTEEEEEEH----HHHHHHHHTTCE-----EEEE----ECHHHHHHHTTCSSCCSCEEEEEECSCHH
T ss_pred hhccchhhhhh-cccccCCCcH----HHHHHHHhCCCc-----EEEE----ecHHHHHHHHHHhcCCCcEEEEEeCcCHH
Confidence 3 111221110 0000 01122 235566654322 1111 4699999999999 89999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcC
Q 006571 318 FLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (640)
Q Consensus 318 lLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~ 371 (640)
+|||||+++|..+...|.+.|+++.+ ++| ++| + ..||.|+++++
T Consensus 150 ~Lde~~~~~d~~~~~~i~~~l~~~~~-~~~---~~h-~-----~~~d~iiv~~~ 193 (218)
T 1z6g_A 150 VLLSRLLTRNTENQEQIQKRMEQLNI-ELH---EAN-L-----LNFNLSIINDD 193 (218)
T ss_dssp HHHHHHHHTCCCCHHHHHHHHHHHHH-HHH---HHT-T-----SCCSEEEECSS
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHH-HHH---hhc-c-----cCCCEEEECCC
Confidence 99999999999999999999988754 344 456 1 45788777654
No 82
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.84 E-value=9.7e-21 Score=201.27 Aligned_cols=78 Identities=27% Similarity=0.349 Sum_probs=69.9
Q ss_pred ccCCcCCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccC
Q 006571 291 SFVRGVSGGERK------RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFD 364 (640)
Q Consensus 291 ~~~~~LSGGqrq------Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D 364 (640)
..+..||||||| |+++|++|+.+|++|||||||+|||+..+..+++.|+++.+.|+|||++||++ ++...||
T Consensus 244 ~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~--~~~~~~d 321 (339)
T 3qkt_A 244 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAAD 321 (339)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCS
T ss_pred CChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChH--HHHHhCC
Confidence 346789999999 66778888889999999999999999999999999999877789999999994 3678999
Q ss_pred EEEEEc
Q 006571 365 KLILLG 370 (640)
Q Consensus 365 ~i~vL~ 370 (640)
++++|+
T Consensus 322 ~~~~l~ 327 (339)
T 3qkt_A 322 HVIRIS 327 (339)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999986
No 83
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.83 E-value=9.5e-24 Score=222.13 Aligned_cols=145 Identities=12% Similarity=0.138 Sum_probs=111.4
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEE-----------------------EeCCeEEEEECCCCCcHHHHHHHHH
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGS-----------------------VNPGEVLALMGPSGSGKTTLLNLLS 204 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~-----------------------i~~Ge~~aIvGpsGsGKSTLl~~L~ 204 (640)
..|+++||++.|. ++++++++. +++|+++||+||||||||||+++|+
T Consensus 42 ~~i~~~~v~~~y~----------p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~ 111 (312)
T 3aez_A 42 EQIDLLEVEEVYL----------PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQ 111 (312)
T ss_dssp CCCCHHHHHHTHH----------HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEeeehhhhhh----------hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHH
Confidence 3588899988771 355555543 8999999999999999999999999
Q ss_pred cCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccc
Q 006571 205 GRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 284 (640)
Q Consensus 205 G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 284 (640)
|.+. +..|. ++++||+|++.+++. |++||+.+... ...+.....+.+.++++.++ ....
T Consensus 112 gll~--~~~G~-------------~~v~~v~qd~~~~~~-t~~e~~~~~~~----~g~~~~~d~~~~~~~L~~l~-~~~~ 170 (312)
T 3aez_A 112 ALLA--RWDHH-------------PRVDLVTTDGFLYPN-AELQRRNLMHR----KGFPESYNRRALMRFVTSVK-SGSD 170 (312)
T ss_dssp HHHH--TSTTC-------------CCEEEEEGGGGBCCH-HHHHHTTCTTC----TTSGGGBCHHHHHHHHHHHH-TTCS
T ss_pred hhcc--ccCCC-------------CeEEEEecCccCCcc-cHHHHHHHHHh----cCCChHHHHHHHHHHHHHhC-CCcc
Confidence 9653 23342 469999999999988 99999865321 11222233456777888876 3333
Q ss_pred cccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 006571 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 328 (640)
Q Consensus 285 ~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~ 328 (640)
+.. +..|||||+||+++|++++.+|+|||||||+..+|+
T Consensus 171 ~~~-----~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 171 YAC-----APVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp CEE-----EEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred cCC-----cccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 333 357999999999999999999999999999999987
No 84
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.82 E-value=3.8e-22 Score=202.19 Aligned_cols=181 Identities=10% Similarity=0.091 Sum_probs=112.4
Q ss_pred cccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCH
Q 006571 167 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTV 246 (640)
Q Consensus 167 ~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV 246 (640)
.+++++|+||||++++|+++||+||||||||||+++|+|.+ |.+.++ ..++.++|++|++ +++.+|+
T Consensus 9 ~~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l------G~~~~~------~~~~~i~~v~~d~-~~~~l~~ 75 (245)
T 2jeo_A 9 SGVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL------GQNEVE------QRQRKVVILSQDR-FYKVLTA 75 (245)
T ss_dssp --------------CCSEEEEEECSTTSSHHHHHHHHHHHH------TGGGSC------GGGCSEEEEEGGG-GBCCCCH
T ss_pred CCCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh------chhccc------ccCCceEEEeCCc-CccccCH
Confidence 35678999999999999999999999999999999999843 333333 3467899999996 6778999
Q ss_pred HHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 006571 247 KETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGL 326 (640)
Q Consensus 247 ~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgL 326 (640)
.|++.+......... +.....+.+.+.++.+ .+..+. .+..+|+||+||+.+ ++++.+|+++|||||...+
T Consensus 76 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~l--~~~~~~-----~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~ 146 (245)
T 2jeo_A 76 EQKAKALKGQYNFDH-PDAFDNDLMHRTLKNI--VEGKTV-----EVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFY 146 (245)
T ss_dssp HHHHHHHTTCCCTTS-GGGBCHHHHHHHHHHH--HTTCCE-----EECCEETTTTEECSS-CEEECCCSEEEEECTTTTT
T ss_pred hHhhhhhccCCCCCC-cccccHHHHHHHHHHH--HCCCCe-----ecccccccccCccCc-eEEecCCCEEEEeCccccc
Confidence 999987543211000 1111123344555543 233333 246899999999988 5888899999999998888
Q ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHh-ccCEEEEEcCCeEEEecChHHHHHHHH
Q 006571 327 DSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFH-KFDKLILLGKGSLLYFGKASEAMAYFS 388 (640)
Q Consensus 327 D~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~-~~D~i~vL~~G~iv~~G~~~~~~~~f~ 388 (640)
|.. +.++ .+.+|++++|+.. .+.+ +++++ ++|+ +.+++.+.+.
T Consensus 147 ~~~--------l~~~--~~~~i~v~th~~~-~~~r~~~r~~---~~G~-----~~e~~~~~~~ 190 (245)
T 2jeo_A 147 SQE--------IRDM--FHLRLFVDTDSDV-RLSRRVLRDV---RRGR-----DLEQILTQYT 190 (245)
T ss_dssp SHH--------HHTT--CSEEEEEECCHHH-HHHHHHHHHT---C--------CHHHHHHHHH
T ss_pred cHH--------HHHh--cCeEEEEECCHHH-HHHHHHHHHH---HcCC-----CHHHHHHHHH
Confidence 864 2222 3789999999733 3333 34444 6675 6777766544
No 85
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.82 E-value=8.9e-21 Score=223.44 Aligned_cols=162 Identities=23% Similarity=0.379 Sum_probs=123.2
Q ss_pred HHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCC--cc-H--HHHHHHHHHH
Q 006571 200 LNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNT--LT-K--QQKEKRAIDV 274 (640)
Q Consensus 200 l~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~--~~-~--~~~~~~v~~~ 274 (640)
..|..+|+. +..|+|.++|+++.+ +..+||.|++.|......+.. .. . ....++..+.
T Consensus 385 ~~C~g~rl~--~~~~~V~i~G~~i~~---------------~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 447 (916)
T 3pih_A 385 SVCGGRRLN--REALSVKINGLNIHE---------------FTELSISEELEFLKNLNLTEREREIVGELLKEIEKRLEF 447 (916)
T ss_dssp TTTCSCCBC--TTGGGEEETTEEHHH---------------HHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHHHHHH
T ss_pred hhcccccCC--hHhcCcEECCccHHH---------------hhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHHHHHH
Confidence 344444443 457999999998742 235688888887554332211 00 0 0111234567
Q ss_pred HHHcCCCcc-ccccccCccCCcCCHHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE
Q 006571 275 INELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNEIIINPS--LLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTT 351 (640)
Q Consensus 275 l~~lgL~~~-~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~--iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~ 351 (640)
+..+||... .+. .+.+|||||||||+|||+|+.+|+ +|||||||+|||+.....+++.|+++.++|.|||++
T Consensus 448 L~~vgL~~l~l~r-----~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivV 522 (916)
T 3pih_A 448 LVDVGLEYLTLSR-----SATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVV 522 (916)
T ss_dssp HHTTTCTTCBTTS-----BGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEE
T ss_pred HHHcCCccccccC-----CcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 788898753 343 456899999999999999999887 999999999999999999999999998889999999
Q ss_pred eCCCCcHHHhccCEEEEE------cCCeEEEecChHHHHH
Q 006571 352 IHQPSSRLFHKFDKLILL------GKGSLLYFGKASEAMA 385 (640)
Q Consensus 352 tH~~~~~i~~~~D~i~vL------~~G~iv~~G~~~~~~~ 385 (640)
+||+. ....||+|++| ++|++++.|+++++..
T Consensus 523 tHd~~--~~~~aD~ii~lgpgag~~~G~iv~~G~~~e~~~ 560 (916)
T 3pih_A 523 EHDEE--VIRNADHIIDIGPGGGTNGGRVVFQGTVDELLK 560 (916)
T ss_dssp CCCHH--HHHTCSEEEEEESSSGGGCSEEEEEECHHHHHH
T ss_pred eCCHH--HHHhCCEEEEEcCCcccCCCEEEEeechhhhhc
Confidence 99964 34669999999 8999999999998763
No 86
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.82 E-value=2.2e-21 Score=201.63 Aligned_cols=184 Identities=15% Similarity=0.121 Sum_probs=121.6
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCccc-EEEECCEeCC-hhccCcEEEEccCCCCCCCCCHH
Q 006571 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGG-SITYNDHPYS-KSLKSKIGFVTQDDVLFPHLTVK 247 (640)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G-~I~~~G~~~~-~~~~~~i~yV~Q~~~l~~~lTV~ 247 (640)
.++|+++++.+++|++++|+||||||||||++.|+|... +.+| .|.+.+.+.. ..+++++.++.|+.. +++.
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~--~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~~ 95 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWG--TAMGKKVGLAMLEESVEETAEDLIGLHNRVR----LRQS 95 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHH--HTSCCCEEEEESSSCHHHHHHHHHHHHTTCC----GGGC
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH--HHcCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhhc
Confidence 468999999999999999999999999999999999653 2346 6755443333 233334444444321 2233
Q ss_pred HHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHH-HHHHHHHHHHhhCCCEEEEeCCCC--
Q 006571 248 ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE-RKRVCIGNEIIINPSLLFLDEPTS-- 324 (640)
Q Consensus 248 Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGq-rqRv~IA~aL~~~P~iLlLDEPTs-- 324 (640)
+++..+. ++.++..+.++++++..++. ..+ .+..+|.+| +||+. |+++..+|++||+||||+
T Consensus 96 ~~l~~~~-------~~~~~~~~~~~~~l~~~~l~-i~~------~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~ 160 (296)
T 1cr0_A 96 DSLKREI-------IENGKFDQWFDELFGNDTFH-LYD------SFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVV 160 (296)
T ss_dssp HHHHHHH-------HHHTHHHHHHHHHHSSSCEE-EEC------CCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC---
T ss_pred cccccCC-------CCHHHHHHHHHHHhccCCEE-EEC------CCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccC
Confidence 4444321 11222333444444322221 111 124588898 66776 999999999999999999
Q ss_pred -C---CCH-HHHHHHHHHHHHHHHC-CCEEEEEeCCCC-c--------------------HHHhccCEEEEEcCCeE
Q 006571 325 -G---LDS-TTALRIVQMLQDIAEA-GKTVVTTIHQPS-S--------------------RLFHKFDKLILLGKGSL 374 (640)
Q Consensus 325 -g---LD~-~s~~~i~~~L~~l~~~-g~TvI~~tH~~~-~--------------------~i~~~~D~i~vL~~G~i 374 (640)
+ +|. .....+++.|++++++ |.|||+++|+.. . .+.+.||+|++|++|+.
T Consensus 161 ~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 161 SASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp --------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 5 555 6678899999999865 999999999951 2 57788999999999874
No 87
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.81 E-value=4.1e-20 Score=207.20 Aligned_cols=78 Identities=21% Similarity=0.363 Sum_probs=71.3
Q ss_pred cCCcC-CHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEE
Q 006571 292 FVRGV-SGGERKRVCIGNEIIINP--SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLIL 368 (640)
Q Consensus 292 ~~~~L-SGGqrqRv~IA~aL~~~P--~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~v 368 (640)
.+..| ||||||||+||++|+.+| ++|||||||+|||+.++..|.+.|+++++ |+|||+|||++. +...||++++
T Consensus 393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~--~~~~~d~~~~ 469 (517)
T 4ad8_A 393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQ--IAARAHHHYK 469 (517)
T ss_dssp BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHH--HHHHSSEEEE
T ss_pred cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEE
Confidence 35567 999999999999999999 99999999999999999999999999987 899999999964 4567999999
Q ss_pred EcCC
Q 006571 369 LGKG 372 (640)
Q Consensus 369 L~~G 372 (640)
|++|
T Consensus 470 ~~~~ 473 (517)
T 4ad8_A 470 VEKQ 473 (517)
T ss_dssp EECC
T ss_pred Eecc
Confidence 9665
No 88
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.80 E-value=2.4e-21 Score=206.61 Aligned_cols=191 Identities=15% Similarity=0.173 Sum_probs=138.9
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.++.+++++.|. .+..+|+++ ++|.+||+++|+||||||||||+++|+|... +..|.|.+.|++..+
T Consensus 45 ~i~~~~l~~~~~-------tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~--~~~g~i~~~G~~~~ev~~ 114 (347)
T 2obl_A 45 PLLRQVIDQPFI-------LGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGAS--ADIIVLALIGERGREVNE 114 (347)
T ss_dssp STTCCCCCSEEC-------CSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSC--CSEEEEEEESCCHHHHHH
T ss_pred CeeecccceecC-------CCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCC--CCEEEEEEecccHHHHHH
Confidence 578889988872 145799999 9999999999999999999999999999653 457999999875211
Q ss_pred --------hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCC
Q 006571 226 --------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (640)
Q Consensus 226 --------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LS 297 (640)
.+++.+.+++|.+. +..+.+.-... ...+.+.....+ .+..+--..+..||
T Consensus 115 ~i~~~~~~~~~~~v~~~~~~~~-----~~~~r~~~~~~------------~~~~ae~~~~~~----~~vl~~ld~~~~lS 173 (347)
T 2obl_A 115 FLALLPQSTLSKCVLVVTTSDR-----PALERMKAAFT------------ATTIAEYFRDQG----KNVLLMMDSVTRYA 173 (347)
T ss_dssp HHTTSCHHHHTTEEEEEECTTS-----CHHHHHHHHHH------------HHHHHHHHHTTT----CEEEEEEETHHHHH
T ss_pred HHHhhhhhhhhceEEEEECCCC-----CHHHHHHHHHH------------HHHHHHHHHhcc----ccHHHHHhhHHHHH
Confidence 13455788887542 33333321100 000111111111 11111002346799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH--CCC-----EEEEEeCCCCcHHHhccCEEEEEc
Q 006571 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE--AGK-----TVVTTIHQPSSRLFHKFDKLILLG 370 (640)
Q Consensus 298 GGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~--~g~-----TvI~~tH~~~~~i~~~~D~i~vL~ 370 (640)
+|| ||+++| +.+|++ |+|||+....++.++++++.+ .|. ||++++||++. .+||++++|.
T Consensus 174 ~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~~---~i~d~v~~i~ 240 (347)
T 2obl_A 174 RAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVND---PIGDEVRSIL 240 (347)
T ss_dssp HHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCCC---HHHHHHHHHC
T ss_pred HHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCCC---hhhhheEEee
Confidence 999 899999 688887 999999999999999999864 477 99999999873 6799999999
Q ss_pred CCeEEEecChHHH
Q 006571 371 KGSLLYFGKASEA 383 (640)
Q Consensus 371 ~G~iv~~G~~~~~ 383 (640)
+|+|+..|+.+++
T Consensus 241 dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 241 DGHIVLTRELAEE 253 (347)
T ss_dssp SEEEEBCHHHHTT
T ss_pred CcEEEEeCCHHHc
Confidence 9999999988775
No 89
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.79 E-value=1.1e-20 Score=225.87 Aligned_cols=173 Identities=17% Similarity=0.174 Sum_probs=121.3
Q ss_pred eEEEEe-----EEEEEeeccccccccccceeceEEEEeC-------CeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEE
Q 006571 149 YLKFTD-----VTYKVILKGMTSSEEKDILNGITGSVNP-------GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSI 216 (640)
Q Consensus 149 ~l~~~~-----vs~~~~~~~~~~~~~~~iL~~vs~~i~~-------Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I 216 (640)
.|+++| |++.|. +++.|++|+++.+++ |++++|+||||||||||||+| |.+.
T Consensus 750 ~l~i~~~rHP~l~~~~~-------~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~-------- 813 (1022)
T 2o8b_B 750 FLELKGSRHPCITKTFF-------GDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA-------- 813 (1022)
T ss_dssp CEEEEEECCCC-------------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH--------
T ss_pred eEEEEeccccEEEEEec-------CCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH--------
Confidence 599999 888762 345799999999987 999999999999999999999 8542
Q ss_pred EECCEeCChhccCcEE-EEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCc
Q 006571 217 TYNDHPYSKSLKSKIG-FVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRG 295 (640)
Q Consensus 217 ~~~G~~~~~~~~~~i~-yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~ 295 (640)
+..++| ||||+.. .+||.|+|.. + +|+.+.... ....
T Consensus 814 ----------~~aqiG~~Vpq~~~---~l~v~d~I~~----r--------------------ig~~d~~~~-----~~st 851 (1022)
T 2o8b_B 814 ----------VMAQMGCYVPAEVC---RLTPIDRVFT----R--------------------LGASDRIMS-----GEST 851 (1022)
T ss_dssp ----------HHHTTTCCEESSEE---EECCCSBEEE----E--------------------CC--------------CH
T ss_pred ----------HHhheeEEeccCcC---CCCHHHHHHH----H--------------------cCCHHHHhh-----chhh
Confidence 123455 9999863 4566655421 1 122211111 1245
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH-HHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCe
Q 006571 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTA-LRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (640)
Q Consensus 296 LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~-~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~ 373 (640)
+|+++++ +++|++++.+|+++||||||+|+|+... ..++..|+.++++ |.++|++||++. .+...+|++.++ +|+
T Consensus 852 f~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~e-l~~~~~d~~~v~-~g~ 928 (1022)
T 2o8b_B 852 FFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHS-LVEDYSQNVAVR-LGH 928 (1022)
T ss_dssp HHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHH-HHHHTSSCSSEE-EEE
T ss_pred hHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHH-HHHHhCCcceee-cCe
Confidence 7777765 9999999999999999999999999984 5578899999876 999999999964 455678998887 588
Q ss_pred EE--EecChHH
Q 006571 374 LL--YFGKASE 382 (640)
Q Consensus 374 iv--~~G~~~~ 382 (640)
+. +.|++++
T Consensus 929 ~~~~~~~~~~~ 939 (1022)
T 2o8b_B 929 MACMVENECED 939 (1022)
T ss_dssp EEEC-------
T ss_pred EEEEEecCccc
Confidence 87 5565443
No 90
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.78 E-value=3.8e-22 Score=224.16 Aligned_cols=168 Identities=15% Similarity=0.123 Sum_probs=117.6
Q ss_pred cccceeceEE-EEeCCeEEEEECCCCCcHHHHHHH--HHcCCCCCCcccEEEECCEeCCh---hccCcEEEEccCCCCCC
Q 006571 169 EKDILNGITG-SVNPGEVLALMGPSGSGKTTLLNL--LSGRLMEPTVGGSITYNDHPYSK---SLKSKIGFVTQDDVLFP 242 (640)
Q Consensus 169 ~~~iL~~vs~-~i~~Ge~~aIvGpsGsGKSTLl~~--L~G~~~~~~~~G~I~~~G~~~~~---~~~~~i~yV~Q~~~l~~ 242 (640)
..++|++||+ .|++|++++|+||||||||||+++ ++|... +.+|.|+++|++... ..++.+||++|++...+
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~--~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~ 101 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE--FDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEG 101 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHH--HCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTT
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh--CCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccC
Confidence 4679999999 999999999999999999999999 678542 347999999988532 23467899999854321
Q ss_pred CCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 006571 243 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 322 (640)
Q Consensus 243 ~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEP 322 (640)
+ +.+ ..... . +...++++.++|.+..+. .++.|||| +|++++||||
T Consensus 102 ~------l~~---~~~~~--~-----~~~~~~l~~~~l~~~~~~-----~~~~LS~g-------------~~~~lilDe~ 147 (525)
T 1tf7_A 102 K------LFI---LDASP--D-----PEGQEVVGGFDLSALIER-----INYAIQKY-------------RARRVSIDSV 147 (525)
T ss_dssp S------EEE---EECCC--C-----SSCCSCCSSHHHHHHHHH-----HHHHHHHH-------------TCSEEEEECS
T ss_pred c------EEE---EecCc--c-----cchhhhhcccCHHHHHHH-----HHHHHHHc-------------CCCEEEECCH
Confidence 1 110 00000 0 000111112222222221 12345555 5889999999
Q ss_pred CC-----CCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcH--------HHhccCEEEEEcCC
Q 006571 323 TS-----GLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSR--------LFHKFDKLILLGKG 372 (640)
Q Consensus 323 Ts-----gLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~--------i~~~~D~i~vL~~G 372 (640)
|+ +||+..+..+.++++++++.|+|||+++|++... +..+||+|++|++|
T Consensus 148 t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~ 210 (525)
T 1tf7_A 148 TSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNV 210 (525)
T ss_dssp TTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEE
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEE
Confidence 98 4699999999999999988899999999998652 23459999999983
No 91
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.78 E-value=2.5e-19 Score=201.19 Aligned_cols=156 Identities=13% Similarity=0.116 Sum_probs=118.3
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHhc
Q 006571 177 TGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALL 256 (640)
Q Consensus 177 s~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~ 256 (640)
++.+++|++++|+||||||||||++.++|... + .|+ +.+.|++|++. ..+.++..
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~--~-~G~-------------~vi~~~~ee~~----~~l~~~~~----- 329 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENAC--A-NKE-------------RAILFAYEESR----AQLLRNAY----- 329 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHH--T-TTC-------------CEEEEESSSCH----HHHHHHHH-----
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH--h-CCC-------------CEEEEEEeCCH----HHHHHHHH-----
Confidence 45899999999999999999999999998543 2 242 12456677642 13333321
Q ss_pred cCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH-----HH
Q 006571 257 RLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST-----TA 331 (640)
Q Consensus 257 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~-----s~ 331 (640)
+.. .+. ++ +...|+.+..+. .+..|||||+||+.+|+++..+|++|++| ||++||.. .+
T Consensus 330 ~~g--~~~-------~~-~~~~g~~~~~~~-----~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~ 393 (525)
T 1tf7_A 330 SWG--MDF-------EE-MERQNLLKIVCA-----YPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFR 393 (525)
T ss_dssp TTS--CCH-------HH-HHHTTSEEECCC-----CGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHH
T ss_pred HcC--CCH-------HH-HHhCCCEEEEEe-----ccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHH
Confidence 111 121 12 223455444432 35689999999999999999999999999 99999999 99
Q ss_pred HHHHHHHHHHHHCCCEEEEEeCCCC---------cHHHhccCEEEEEcCCe
Q 006571 332 LRIVQMLQDIAEAGKTVVTTIHQPS---------SRLFHKFDKLILLGKGS 373 (640)
Q Consensus 332 ~~i~~~L~~l~~~g~TvI~~tH~~~---------~~i~~~~D~i~vL~~G~ 373 (640)
..+.++++.+++.|.|||+++|+.. ..+..+||+|++|++|+
T Consensus 394 ~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 394 QFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 9999999999888999999999971 34567899999999887
No 92
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.78 E-value=7.6e-19 Score=206.10 Aligned_cols=135 Identities=24% Similarity=0.400 Sum_probs=109.8
Q ss_pred CCCCHHHHHHHHHhccCCCC---cc---HHHHHHHHHHHHHHcCCCcc-ccccccCccCCcCCHHHHHHHHHHHHHhhCC
Q 006571 242 PHLTVKETLTYAALLRLPNT---LT---KQQKEKRAIDVINELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNEIIINP 314 (640)
Q Consensus 242 ~~lTV~Enl~~~~~~~~~~~---~~---~~~~~~~v~~~l~~lgL~~~-~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P 314 (640)
..+||.|++.|...+.++.. +. .++..+++ +.+..+||... .+. .+.+|||||||||+||++|..+|
T Consensus 450 ~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR-----~~~tLSGGEkQRV~LA~aL~~~~ 523 (972)
T 2r6f_A 450 TAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSR-----SAGTLSGGEAQRIRLATQIGSRL 523 (972)
T ss_dssp HTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSS-----BGGGCCHHHHHHHHHHHHHTTCC
T ss_pred hhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCC-----ccccCCHHHHHHHHHHHHHhhCC
Confidence 36899999999766543320 00 02334455 45888999753 344 45689999999999999999985
Q ss_pred --CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEE------cCCeEEEecChHHHH
Q 006571 315 --SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEAM 384 (640)
Q Consensus 315 --~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL------~~G~iv~~G~~~~~~ 384 (640)
++|||||||+|||+.....+++.|++|.+.|.|||+|+|++. . ...||+|++| ++|++++.|+++++.
T Consensus 524 ~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~-~-i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~ 599 (972)
T 2r6f_A 524 TGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDED-T-MLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 599 (972)
T ss_dssp CSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHH-H-HHSCSEEEEECSSSGGGCCSEEEEECTTTTT
T ss_pred CCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-H-HHhCCEEEEeCCCccCCCCEEEEecCHHHHH
Confidence 999999999999999999999999999888999999999974 3 4679999999 799999999998764
No 93
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.77 E-value=3.9e-19 Score=210.34 Aligned_cols=160 Identities=15% Similarity=0.126 Sum_probs=112.1
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHH
Q 006571 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248 (640)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~E 248 (640)
.+.|++|+++++++|++++|+||||||||||||+|++.... ...| +|||++...++.
T Consensus 648 ~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~-aq~G-----------------~~vpa~~~~~~~----- 704 (934)
T 3thx_A 648 IAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLM-AQIG-----------------CFVPCESAEVSI----- 704 (934)
T ss_dssp CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHH-HHHT-----------------CCBSEEEEEEEC-----
T ss_pred ceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHH-HhcC-----------------CccccccccchH-----
Confidence 46799999999999999999999999999999999421100 0011 011111000000
Q ss_pred HHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHH--hhCCCEEEEeCCCCCC
Q 006571 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEI--IINPSLLFLDEPTSGL 326 (640)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL--~~~P~iLlLDEPTsgL 326 (640)
+++++..+|+.+. ..+++|+|++++..+|++| +.+|+++||||||+||
T Consensus 705 ----------------------~d~i~~~ig~~d~--------l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~Gl 754 (934)
T 3thx_A 705 ----------------------VDCILARVGAGDS--------QLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGT 754 (934)
T ss_dssp ----------------------CSEEEEECC-----------------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSS
T ss_pred ----------------------HHHHHHhcCchhh--------HHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCC
Confidence 0000111222211 1246888888888888888 9999999999999999
Q ss_pred CHHHHHHH-HHHHHHHHH-CCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHH
Q 006571 327 DSTTALRI-VQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (640)
Q Consensus 327 D~~s~~~i-~~~L~~l~~-~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (640)
|+.....+ ...++.+.+ .|.|+|++||+. ++..+||++..+.+|++...++.+++
T Consensus 755 D~~~~~~i~~~il~~l~~~~g~~vl~aTH~~--el~~lad~~~~v~ng~v~~~~~~~~l 811 (934)
T 3thx_A 755 STYDGFGLAWAISEYIATKIGAFCMFATHFH--ELTALANQIPTVNNLHVTALTTEETL 811 (934)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCEEEEEESCG--GGGGGGGTCTTEEEEEEEEEEETTEE
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH--HHHHHhcccceeEeeEEEEEecCCcE
Confidence 99998888 677777876 499999999994 36689999999999999998887664
No 94
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.77 E-value=6.6e-20 Score=188.16 Aligned_cols=132 Identities=20% Similarity=0.315 Sum_probs=99.3
Q ss_pred cceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCc-ccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHH
Q 006571 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTV-GGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKET 249 (640)
Q Consensus 171 ~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~-~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~En 249 (640)
++|+++| +++|++++|+||||||||||+++|+|.+. +. +|+|.++|.++....+..+++++|.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~--~~~~G~I~~~g~~i~~~~~~~~~~v~q~------------ 78 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDPIEYVFKHKKSIVNQR------------ 78 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHH--HHCCCEEEEEESSCCSCCCCSSSEEEEE------------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCC--CCCCCEEEEcCCcceeecCCcceeeeHH------------
Confidence 5899999 99999999999999999999999998542 34 7999999987532111222222221
Q ss_pred HHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 006571 250 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST 329 (640)
Q Consensus 250 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~ 329 (640)
.+|+.. ..+ |++||++|..+|++|++|||| |+.
T Consensus 79 ---------------------------~~gl~~-----------~~l------~~~la~aL~~~p~illlDEp~---D~~ 111 (261)
T 2eyu_A 79 ---------------------------EVGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DLE 111 (261)
T ss_dssp ---------------------------EBTTTB-----------SCH------HHHHHHHHHHCCSEEEESCCC---SHH
T ss_pred ---------------------------HhCCCH-----------HHH------HHHHHHHHhhCCCEEEeCCCC---CHH
Confidence 123321 123 899999999999999999999 998
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcC
Q 006571 330 TALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (640)
Q Consensus 330 s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~ 371 (640)
+...++ +. ++.|.+|++++|+.+ +...|||+++|..
T Consensus 112 ~~~~~l---~~-~~~g~~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 112 TVETAL---RA-AETGHLVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp HHHHHH---HH-HHTTCEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred HHHHHH---HH-HccCCEEEEEeCcch--HHHHHHHHhhhcC
Confidence 866544 33 356999999999965 4678999988864
No 95
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.76 E-value=1.1e-18 Score=205.36 Aligned_cols=137 Identities=21% Similarity=0.342 Sum_probs=109.2
Q ss_pred CCCCCHHHHHHHHHhccCCCCcc------HHHHHHHHHHHHHHcCCCcc-ccccccCccCCcCCHHHHHHHHHHHHHhhC
Q 006571 241 FPHLTVKETLTYAALLRLPNTLT------KQQKEKRAIDVINELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNEIIIN 313 (640)
Q Consensus 241 ~~~lTV~Enl~~~~~~~~~~~~~------~~~~~~~v~~~l~~lgL~~~-~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~ 313 (640)
+..+||.|++.|...+.++.... .++..+++ +.+..+||... .+. .+.+|||||||||+||++|..+
T Consensus 466 ~~~ltV~e~l~f~enl~l~~~~~~i~~~i~~ei~~Rl-~~L~~vGL~~l~l~r-----~~~tLSGGEkQRV~LA~aL~~~ 539 (993)
T 2ygr_A 466 VCELSIADCADFLNALTLGPREQAIAGQVLKEIRSRL-GFLLDVGLEYLSLSR-----AAATLSGGEAQRIRLATQIGSG 539 (993)
T ss_dssp SSHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHH-HHHHHHTGGGSCTTC-----BGGGCCHHHHHHHHHHHHHTTC
T ss_pred HhhCCHHHHHHHHHhcCCCHHHhHHHHHHHHHHHHHH-HHHhhCCCCccccCC-----CcccCCHHHHHHHHHHHHHhhC
Confidence 44689999999954433221000 02333444 45788898743 343 4568999999999999999999
Q ss_pred --CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEE------cCCeEEEecChHHHHH
Q 006571 314 --PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEAMA 385 (640)
Q Consensus 314 --P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL------~~G~iv~~G~~~~~~~ 385 (640)
|++|||||||+|||+.....+++.|++|.+.|.|||+|+|++. ....||+|++| ++|++++.|+++++.+
T Consensus 540 ~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~--~i~~ADrIi~Lgp~aG~~gG~iv~~G~~~e~~~ 617 (993)
T 2ygr_A 540 LVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDED--TIEHADWIVDIGPGAGEHGGRIVHSGPYDELLR 617 (993)
T ss_dssp CCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHHTCSEEEEECSSSGGGCCSCCEEECHHHHHH
T ss_pred CCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHH--HHHhCCEEEEecCccccCCCEEEEeeCHHHhhh
Confidence 5899999999999999999999999999988999999999964 34689999999 7899999999998764
No 96
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.76 E-value=4.4e-20 Score=185.43 Aligned_cols=169 Identities=15% Similarity=0.123 Sum_probs=108.9
Q ss_pred ceeceE-EEEeCCeEEEEECCCCCcHHHHHHHHH--cCCCCCCcccEEEECCEeCChh---ccCcEEEEccCCCCCCCCC
Q 006571 172 ILNGIT-GSVNPGEVLALMGPSGSGKTTLLNLLS--GRLMEPTVGGSITYNDHPYSKS---LKSKIGFVTQDDVLFPHLT 245 (640)
Q Consensus 172 iL~~vs-~~i~~Ge~~aIvGpsGsGKSTLl~~L~--G~~~~~~~~G~I~~~G~~~~~~---~~~~i~yV~Q~~~l~~~lT 245 (640)
.|+++- +.|++|++++|+||||||||||+++|+ |... +.+|.+.+++...... ..+.++|++|+....+.++
T Consensus 18 ~lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 95 (251)
T 2ehv_A 18 GFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEE--YGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIA 95 (251)
T ss_dssp TTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHH--HCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEE
T ss_pred hHHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh--CCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEE
Confidence 344442 389999999999999999999999999 5312 2356777777654322 2345788888765555555
Q ss_pred HHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 006571 246 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 325 (640)
Q Consensus 246 V~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsg 325 (640)
+.++....... ........ ....+-++..+......-..+|++++|||||++
T Consensus 96 ~~~~~~~~~~~----------~~~~~~~~------------------~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ 147 (251)
T 2ehv_A 96 IVDGVSSVVGL----------PSEEKFVL------------------EDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSI 147 (251)
T ss_dssp EEC-----------------------------------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHH
T ss_pred EEEcccccccc----------ccccceec------------------cCcccHHHHHHHHHHHHHhhCCCEEEEccHHHH
Confidence 55543321100 00000000 012334454444444445689999999999999
Q ss_pred CC-----HHHHHHHHHHHHHHHHCCCEEEEEeCCCCcH--------HHhcc-CEEEEEc
Q 006571 326 LD-----STTALRIVQMLQDIAEAGKTVVTTIHQPSSR--------LFHKF-DKLILLG 370 (640)
Q Consensus 326 LD-----~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~--------i~~~~-D~i~vL~ 370 (640)
|| +..+..+.++++.+++.|+|||+++|++... +..+| |+|++|+
T Consensus 148 ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 148 ALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred HhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEe
Confidence 98 6777779999999987899999999997642 14678 9999995
No 97
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.76 E-value=7.2e-20 Score=181.51 Aligned_cols=153 Identities=24% Similarity=0.245 Sum_probs=99.4
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC-----cccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHH
Q 006571 178 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT-----VGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTY 252 (640)
Q Consensus 178 ~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~-----~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~~ 252 (640)
+-|++|++++|+||||||||||+++|+|....++ .+|.|++++.+.. ..+++++++|+..+++. |+.||+.+
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~--~~~~i~~~~~~~~~~~~-~~~~~~~~ 96 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF--RPERIREIAQNRGLDPD-EVLKHIYV 96 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC--CHHHHHHHHHHTTSCHH-HHHHTEEE
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCC--CHHHHHHHHHHcCCCHH-HHhhcEEE
Confidence 5799999999999999999999999998544322 2346777765421 01234455555444433 44444332
Q ss_pred HHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHH-HHHHHHHHHHHhh-------CCCEEEEeCCCC
Q 006571 253 AALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG-ERKRVCIGNEIII-------NPSLLFLDEPTS 324 (640)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG-qrqRv~IA~aL~~-------~P~iLlLDEPTs 324 (640)
. ...+++ +++++..+++++. +|+++++||||+
T Consensus 97 ~----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~ 136 (231)
T 4a74_A 97 A----------------------------------------RAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 136 (231)
T ss_dssp E----------------------------------------ECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSH
T ss_pred E----------------------------------------ecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHH
Confidence 1 112222 2333455555555 899999999999
Q ss_pred CCCHH-------H-----HHHHHHHHHHHHH-CCCEEEEEeCCCC---cHHHhccCEEEEEcCCe
Q 006571 325 GLDST-------T-----ALRIVQMLQDIAE-AGKTVVTTIHQPS---SRLFHKFDKLILLGKGS 373 (640)
Q Consensus 325 gLD~~-------s-----~~~i~~~L~~l~~-~g~TvI~~tH~~~---~~i~~~~D~i~vL~~G~ 373 (640)
+||+. . ..++++.|+++++ .|.|||+++|... ..+...||++++|++|+
T Consensus 137 ~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 137 HFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred HhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 99984 2 2378888888765 4999999999532 13667899999998753
No 98
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.76 E-value=1.7e-18 Score=162.70 Aligned_cols=83 Identities=27% Similarity=0.321 Sum_probs=73.8
Q ss_pred CccCCcCCHHHHHHHHHH------HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhcc
Q 006571 290 GSFVRGVSGGERKRVCIG------NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKF 363 (640)
Q Consensus 290 ~~~~~~LSGGqrqRv~IA------~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~ 363 (640)
+..+..||||||||++|| |+|+.+|+++||||||+|||+.++..+.+.|+++.++|+|||++||++ ++...|
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~--~~~~~~ 129 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAA 129 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGC
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH--HHHHhC
Confidence 345678999999999876 899999999999999999999999999999999877789999999996 366899
Q ss_pred CEEEEE--cCCeE
Q 006571 364 DKLILL--GKGSL 374 (640)
Q Consensus 364 D~i~vL--~~G~i 374 (640)
|++++| .+|..
T Consensus 130 d~ii~l~~~~g~s 142 (148)
T 1f2t_B 130 DHVIRISLENGSS 142 (148)
T ss_dssp SEEEEEEEETTEE
T ss_pred CEEEEEEcCCCeE
Confidence 999999 45643
No 99
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.72 E-value=7.8e-21 Score=187.15 Aligned_cols=146 Identities=19% Similarity=0.190 Sum_probs=113.4
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCC--CCCCHHHHHHHHHhcc
Q 006571 180 VNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLF--PHLTVKETLTYAALLR 257 (640)
Q Consensus 180 i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~--~~lTV~Enl~~~~~~~ 257 (640)
.++|++++|+||||||||||+++|+|.+. + .++|++|++.++ +.+|+.+++.+...
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~-~-------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~-- 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLG-E-------------------RVALLPMDHYYKDLGHLPLEERLRVNYD-- 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHG-G-------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT--
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhC-C-------------------CeEEEecCccccCcccccHHHhcCCCCC--
Confidence 57899999999999999999999998532 1 589999999876 56799998765321
Q ss_pred CCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHH----HHHHHHHHHHhhCCCEEEEeCCCCC-------C
Q 006571 258 LPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE----RKRVCIGNEIIINPSLLFLDEPTSG-------L 326 (640)
Q Consensus 258 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGq----rqRv~IA~aL~~~P~iLlLDEPTsg-------L 326 (640)
.+. ....+++.+.++.+++.+..+.. +..+|+|| +||+++|++++.+|+++++||||++ |
T Consensus 61 ~~~----~~~~~~~~~~l~~~~~~~~~~~~-----~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~l 131 (211)
T 3asz_A 61 HPD----AFDLALYLEHAQALLRGLPVEMP-----VYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFV 131 (211)
T ss_dssp SGG----GBCHHHHHHHHHHHHTTCCEEEC-----CEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEE
T ss_pred Chh----hhhHHHHHHHHHHHHcCCCcCCC-----cccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEE
Confidence 111 11234566777777776554432 35799996 4788999999999999999999999 9
Q ss_pred CHHHHHHHHHHHHHH-HHCCCEEEEEeCCCC
Q 006571 327 DSTTALRIVQMLQDI-AEAGKTVVTTIHQPS 356 (640)
Q Consensus 327 D~~s~~~i~~~L~~l-~~~g~TvI~~tH~~~ 356 (640)
|+.....+.+.+++. .++|+|++.++|+..
T Consensus 132 d~~~~~~~~r~l~r~~~~~g~t~~~~~~~~~ 162 (211)
T 3asz_A 132 DADADERFIRRLKRDVLERGRSLEGVVAQYL 162 (211)
T ss_dssp ECCHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred eCCHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 999999999999875 456999999999743
No 100
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.72 E-value=1.4e-19 Score=189.49 Aligned_cols=165 Identities=15% Similarity=0.164 Sum_probs=86.9
Q ss_pred EeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhc-cCcE
Q 006571 153 TDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL-KSKI 231 (640)
Q Consensus 153 ~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~-~~~i 231 (640)
+||+++| +++.++++++|+| +|+||||+|||||++.|.|... .+.+| |.++|.++.... .+.+
T Consensus 2 ~~l~~~~--------~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~-~~~~g-i~~~g~~~~~t~~~~~~ 65 (301)
T 2qnr_A 2 SNLPNQV--------HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDL-YPERV-ISGAAEKIERTVQIEAS 65 (301)
T ss_dssp ------------------------CEEE------EEEEETTSSHHHHHHHHHC--------------------------C
T ss_pred CCCcceE--------CCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCc-cCCCC-cccCCcccCCcceEeeE
Confidence 3667776 4567999999998 9999999999999999998522 24578 888887764322 3568
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHh
Q 006571 232 GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII 311 (640)
Q Consensus 232 ~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~ 311 (640)
++++|++.+...+||.|++.++..... .+.....+..+.+ ..+. +.+++|||||||+.+||+++
T Consensus 66 ~~~~q~~~~~~~ltv~Dt~g~~~~~~~-----~e~~~~l~~~l~~------~~~~-----~~~~~sgg~rqrv~~ara~~ 129 (301)
T 2qnr_A 66 TVEIEERGVKLRLTVVDTPGYGDAINC-----RDCFKTIISYIDE------QFER-----YLHDESGLNRRHIIDNRVHC 129 (301)
T ss_dssp EEEEC---CCEEEEEEEEC----------------CTTHHHHHHH------HHHH-----HHHHHTSSCCTTCCCCCCCE
T ss_pred EEEecCCCcccCcchhhhhhhhhhcCc-----HHHHHHHHHHHHH------HHHH-----HHHHhCHHhhhhhhhhhhhh
Confidence 999999888888999999887543210 0000111111111 1122 34689999999999998885
Q ss_pred hCCCEEEEeCCCCC-CCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCc
Q 006571 312 INPSLLFLDEPTSG-LDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSS 357 (640)
Q Consensus 312 ~~P~iLlLDEPTsg-LD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~ 357 (640)
++++||||++ ||+... +.++++.+. +.++|++.||+..
T Consensus 130 ----ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 130 ----CFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTLT 169 (301)
T ss_dssp ----EEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGSC
T ss_pred ----eeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCCC
Confidence 9999999984 999873 556666543 7889999999753
No 101
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.72 E-value=2.4e-18 Score=203.01 Aligned_cols=155 Identities=16% Similarity=0.193 Sum_probs=104.8
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHH
Q 006571 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248 (640)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~E 248 (640)
++.|++|||+++++|++++|+||||||||||||+|++.... ...|. .+... ...+++ -+.++..+.+.+
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~-aq~g~------~vpa~-~~~i~~---~d~i~~~ig~~d 727 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIM-AQIGS------YVPAE-EATIGI---VDGIFTRMGAAD 727 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHH-HHHTC------CBSSS-EEEEEC---CSEEEEEC----
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHH-hhcCc------cccch-hhhhhH---HHHHHHhCChHH
Confidence 56899999999999999999999999999999999863210 11110 00000 011221 122222222221
Q ss_pred HHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 006571 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 328 (640)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~ 328 (640)
++ .. ....+|+|++|++.|+++ +.+|+++||||||+|||+
T Consensus 728 ~l----------------------------------~~-----~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~ 767 (918)
T 3thx_B 728 NI----------------------------------YK-----GRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTST 767 (918)
T ss_dssp ---------------------------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCH
T ss_pred HH----------------------------------HH-----hHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCH
Confidence 11 11 124689999999999999 899999999999999999
Q ss_pred HHHHHHH-HHHHHHHH-CCCEEEEEeCCCCcHHHhccCEEEE-EcCCeEEE
Q 006571 329 TTALRIV-QMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLIL-LGKGSLLY 376 (640)
Q Consensus 329 ~s~~~i~-~~L~~l~~-~g~TvI~~tH~~~~~i~~~~D~i~v-L~~G~iv~ 376 (640)
.....+. ..++.+++ .|.|||++||++. +.+++|+.-- +.++++.+
T Consensus 768 ~~~~~i~~~il~~L~~~~g~tvl~vTH~~e--l~~l~~~~~~~v~n~~~~~ 816 (918)
T 3thx_B 768 HDGIAIAYATLEYFIRDVKSLTLFVTHYPP--VCELEKNYSHQVGNYHMGF 816 (918)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHTTTTEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEeCcHH--HHHHHhhcccceEEEEEEE
Confidence 9999987 77777865 5999999999954 4566776421 34455443
No 102
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.71 E-value=4e-20 Score=211.02 Aligned_cols=194 Identities=14% Similarity=0.177 Sum_probs=120.6
Q ss_pred eEEEEeEEEEEeeccccccccccceece----------EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEE
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGI----------TGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITY 218 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~v----------s~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~ 218 (640)
.++++||++.|.. ..+++|+.+ +++++. +||+|||||||||||++|+|.. .|..+|.|++
T Consensus 10 ~i~~~~l~~~~~~------~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~-~P~~sG~vt~ 79 (608)
T 3szr_A 10 SVAENNLCSQYEE------KVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTR 79 (608)
T ss_dssp ----------CHH------HHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC--------CCC
T ss_pred hhhhhhhhHHHHH------HHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCC-CCCCCCeEEE
Confidence 5789999998831 123455444 355554 9999999999999999999964 3435899999
Q ss_pred CCEeCC-------hhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCc
Q 006571 219 NDHPYS-------KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGS 291 (640)
Q Consensus 219 ~G~~~~-------~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~ 291 (640)
+|.++. ..+++.++|++|++.+++.+||+||+.++....... ..++.
T Consensus 80 ~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~----------------~~~~s---------- 133 (608)
T 3szr_A 80 CPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGE----------------GMGIS---------- 133 (608)
T ss_dssp SCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHCS----------------SSCCC----------
T ss_pred cCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhcCC----------------ccccc----------
Confidence 998852 246788999999999999999999998753211000 00111
Q ss_pred cCCcCCHHHHHHHHHHHHHhhCCCEEEEeCC------CCCCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCCCc------
Q 006571 292 FVRGVSGGERKRVCIGNEIIINPSLLFLDEP------TSGLDSTTALRIVQMLQDIAEA--GKTVVTTIHQPSS------ 357 (640)
Q Consensus 292 ~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEP------TsgLD~~s~~~i~~~L~~l~~~--g~TvI~~tH~~~~------ 357 (640)
++++.++.+...+|+++|+||| |+|||+..+..+.++++++.++ +.++++++|+...
T Consensus 134 ---------~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l 204 (608)
T 3szr_A 134 ---------HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEAL 204 (608)
T ss_dssp ---------SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHH
T ss_pred ---------hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHH
Confidence 1112222223458999999999 9999999999999999997543 6788899999652
Q ss_pred HHHhc-----cCEEEEEcCCeEEEecChHHHHHHH
Q 006571 358 RLFHK-----FDKLILLGKGSLLYFGKASEAMAYF 387 (640)
Q Consensus 358 ~i~~~-----~D~i~vL~~G~iv~~G~~~~~~~~f 387 (640)
.+.+. ...|+|+.++.++..|+.+++.+..
T Consensus 205 ~la~~v~~~g~rtI~VlTK~Dlv~~g~~~~~~~~l 239 (608)
T 3szr_A 205 SMAQEVDPEGDRTIGILTKPDLVDKGTEDKVVDVV 239 (608)
T ss_dssp HHHHHHCSSCCSEEEEEECGGGSSSSSTTCCCCCC
T ss_pred HHHHHHhhcCCceEEEecchhhcCcccHHHHHHHH
Confidence 11122 2458999999888888776554433
No 103
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.71 E-value=7.1e-19 Score=184.30 Aligned_cols=148 Identities=16% Similarity=0.161 Sum_probs=106.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh-----h---c--cCcEEEEccCCCCCCCCCHHHHHH
Q 006571 182 PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----S---L--KSKIGFVTQDDVLFPHLTVKETLT 251 (640)
Q Consensus 182 ~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-----~---~--~~~i~yV~Q~~~l~~~lTV~Enl~ 251 (640)
+|++++|+||||||||||+++|+|.+. +.+|+|.++|.++.. . + +..++||+|++.++|.+||+||+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~--~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~ 178 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ--NLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQ 178 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH--TTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH--hcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHH
Confidence 689999999999999999999999654 458999999998632 1 1 356999999999999899999998
Q ss_pred HHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 006571 252 YAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTA 331 (640)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~ 331 (640)
++..... . ..+++..|+.+..+ +-++..++||++|||+|+.+|+.++| .||+.+.
T Consensus 179 ~~~~~~~--d----------~~llDt~G~~~~~~--------~~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~ 233 (304)
T 1rj9_A 179 AMKARGY--D----------LLFVDTAGRLHTKH--------NLMEELKKVKRAIAKADPEEPKEVWL-----VLDAVTG 233 (304)
T ss_dssp HHHHHTC--S----------EEEECCCCCCTTCH--------HHHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBC
T ss_pred HHHhCCC--C----------EEEecCCCCCCchH--------HHHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHH
Confidence 7532110 0 00122233322211 22455669999999999999994444 4555555
Q ss_pred HHHHHHHHHHHHC-CCEEEEEeCCCC
Q 006571 332 LRIVQMLQDIAEA-GKTVVTTIHQPS 356 (640)
Q Consensus 332 ~~i~~~L~~l~~~-g~TvI~~tH~~~ 356 (640)
.++++.++++.+. |.|+|++||+..
T Consensus 234 ~~~~~~~~~~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 234 QNGLEQAKKFHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp THHHHHHHHHHHHHCCSEEEEECTTS
T ss_pred HHHHHHHHHHHHHcCCcEEEEECCcc
Confidence 5666677777654 899999999843
No 104
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.71 E-value=1.9e-18 Score=201.04 Aligned_cols=161 Identities=18% Similarity=0.167 Sum_probs=112.8
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhcc
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~ 228 (640)
.|++++....+ ... +++.+++|+|++ |++++|+||||||||||||+|+|.... +..|.+. . ..+
T Consensus 550 ~i~i~~~rHP~----le~-~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~-~~~G~~v------p-a~~ 613 (765)
T 1ewq_A 550 RLQIRAGRHPV----VER-RTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALL-AQVGSFV------P-AEE 613 (765)
T ss_dssp SEEEEEECCTT----GGG-TSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHH-HTTTCCB------S-SSE
T ss_pred cEEEEEeECce----Ecc-CCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhh-cccCcee------e-hhc
Confidence 46777663211 000 346899999999 999999999999999999999985421 2346432 1 123
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHH
Q 006571 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN 308 (640)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~ 308 (640)
..+++++| +|+.+++.||+. .++|+|+++++.+++
T Consensus 614 ~~i~~v~~---i~~~~~~~d~l~------------------------------------------~g~S~~~~e~~~la~ 648 (765)
T 1ewq_A 614 AHLPLFDG---IYTRIGASDDLA------------------------------------------GGKSTFMVEMEEVAL 648 (765)
T ss_dssp EEECCCSE---EEEECCC------------------------------------------------CCSHHHHHHHHHHH
T ss_pred cceeeHHH---hhccCCHHHHHH------------------------------------------hcccHHHHHHHHHHH
Confidence 45788877 555666665542 147899999999999
Q ss_pred HH--hhCCCEEEEeCC---CCCCCHHHH-HHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEe
Q 006571 309 EI--IINPSLLFLDEP---TSGLDSTTA-LRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (640)
Q Consensus 309 aL--~~~P~iLlLDEP---TsgLD~~s~-~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (640)
++ +.+|+++||||| |++||..+. ..+++.|++ .|.|+|++||+.. +..++ .--+.++++...
T Consensus 649 il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~~--l~~~~--~~~v~n~~~~~~ 716 (765)
T 1ewq_A 649 ILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE---RRAYTLFATHYFE--LTALG--LPRLKNLHVAAR 716 (765)
T ss_dssp HHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH---HTCEEEEECCCHH--HHTCC--CTTEEEEEEEEE
T ss_pred HHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh---CCCEEEEEeCCHH--HHHhh--hhcceEEEEEEE
Confidence 99 999999999999 999999875 578888776 4899999999953 44554 222344555443
No 105
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.70 E-value=4.5e-19 Score=189.31 Aligned_cols=167 Identities=22% Similarity=0.190 Sum_probs=107.3
Q ss_pred cceece-EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcc----cE-EEECCEeCChhccCcEEEEccCCCCCCCC
Q 006571 171 DILNGI-TGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG----GS-ITYNDHPYSKSLKSKIGFVTQDDVLFPHL 244 (640)
Q Consensus 171 ~iL~~v-s~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~----G~-I~~~G~~~~~~~~~~i~yV~Q~~~l~~~l 244 (640)
+.|+++ .+.|++|++++|+||||||||||++.|++....++.. |. |++++.+.. .++++++++|...+++.
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~--~~~~i~~i~q~~~~~~~- 194 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF--RPERIREIAQNRGLDPD- 194 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC--CHHHHHHHHHTTTCCHH-
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC--CHHHHHHHHHHcCCCHH-
Confidence 356665 6899999999999999999999999999865323333 67 888887641 23457777777665543
Q ss_pred CHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHh-------hCCCEE
Q 006571 245 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII-------INPSLL 317 (640)
Q Consensus 245 TV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~-------~~P~iL 317 (640)
++.||+.+... . -|.+|+|++.++++++ .+|++|
T Consensus 195 ~v~~ni~~~~~------~---------------------------------~~~~~~~~l~~~~~~~~~lS~G~~~~~ll 235 (349)
T 1pzn_A 195 EVLKHIYVARA------F---------------------------------NSNHQMLLVQQAEDKIKELLNTDRPVKLL 235 (349)
T ss_dssp HHGGGEEEEEC------C---------------------------------SHHHHHHHHHHHHHHHHHSSSSSSCEEEE
T ss_pred HHhhCEEEEec------C---------------------------------ChHHHHHHHHHHHHHHHHhccccCCCCEE
Confidence 55555433210 0 1345566666666665 689999
Q ss_pred EEeCCCCCCCHHH------------HHHHHHHHHHHHH-CCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecCh
Q 006571 318 FLDEPTSGLDSTT------------ALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (640)
Q Consensus 318 lLDEPTsgLD~~s------------~~~i~~~L~~l~~-~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (640)
++||||++||+.. ..+++..|+++++ .|.|||+++|... .....++.......|+++.++..
T Consensus 236 IlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~-~~~~~~~~~~~~~~G~~l~~~~~ 310 (349)
T 1pzn_A 236 IVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA-RPDAFFGDPTRPIGGHILAHSAT 310 (349)
T ss_dssp EEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC----------------CCCCCTTCS
T ss_pred EEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc-ccccccCCccccCCcceEeecCc
Confidence 9999999999862 3566777777765 4899999999854 23334455566666776655543
No 106
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.70 E-value=1.9e-19 Score=176.03 Aligned_cols=156 Identities=15% Similarity=0.161 Sum_probs=105.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCC
Q 006571 183 GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN 260 (640)
Q Consensus 183 Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~ 260 (640)
|++++|+||||||||||+++|+|.+. .+| |.++|.+..+ .+++++||++|+. ... ++++. ...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~---~~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~---~~~l~---~~~--- 65 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK---SSG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGT---RGPLS---RVG--- 65 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH---HTT-CCCEEEECCEEETTSSEEEEEEEET--TSC---EEEEE---ECC---
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc---cCC-EEEcCEecchhHhhhceEEEEEEec--ccc---eehhh---ccc---
Confidence 78999999999999999999999653 478 9999987642 3577899999975 111 11110 000
Q ss_pred CccHHHHHHHHHHHHHHcCCCc-cccccccCccCCcCCHHHHHHH-HHHH---HHhhCCCEEEEeC--CCCCCCHHHHHH
Q 006571 261 TLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRV-CIGN---EIIINPSLLFLDE--PTSGLDSTTALR 333 (640)
Q Consensus 261 ~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~LSGGqrqRv-~IA~---aL~~~P~iLlLDE--PTsgLD~~s~~~ 333 (640)
++.++ ..+..+|. +...+|+|||+++ ++++ |+..+|++||||| |+..+|......
T Consensus 66 -----------------~~~~~~~~~~~v~~-~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~ 127 (189)
T 2i3b_A 66 -----------------LEPPPGKRECRVGQ-YVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQA 127 (189)
T ss_dssp -----------------CCCCSSSCCEESSS-SEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHH
T ss_pred -----------------ccCCccccccccce-EEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHH
Confidence 01111 01123332 3456999999998 4454 6899999999999 898899875444
Q ss_pred HHHHHHHHHHCCCEEEE----EeCCCCcHHHhccCEEEEEcCCeEEEec
Q 006571 334 IVQMLQDIAEAGKTVVT----TIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (640)
Q Consensus 334 i~~~L~~l~~~g~TvI~----~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (640)
|+++.+...++|+ ++|+.+ ..+.|+|..+.+|+|+...
T Consensus 128 ----l~~~l~~~~~~ilgti~vsh~~~---~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 128 ----VRQTLSTPGTIILGTIPVPKGKP---LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp ----HHHHHHCSSCCEEEECCCCCSSC---CTTHHHHHTTCCSEEEECC
T ss_pred ----HHHHHhCCCcEEEEEeecCCCCc---hHHHHHHeecCCcEEEEeC
Confidence 4444444555553 238854 2567888888899988755
No 107
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.69 E-value=3.9e-18 Score=199.45 Aligned_cols=157 Identities=17% Similarity=0.129 Sum_probs=110.3
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHH
Q 006571 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248 (640)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~E 248 (640)
++.+++|++++ ++|++++|+||||||||||||+|+|.... ...| ..+.. .+..+++++| +|+.+++.|
T Consensus 594 ~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~-~q~G------~~vpa-~~~~i~~~~~---i~~~~~~~d 661 (800)
T 1wb9_A 594 EPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALM-AYIG------SYVPA-QKVEIGPIDR---IFTRVGAAD 661 (800)
T ss_dssp SCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHH-HTTT------CCBSS-SEEEECCCCE---EEEEEC---
T ss_pred Cceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHH-HhcC------cccch-hcccceeHHH---HHhhCCHHH
Confidence 46799999999 99999999999999999999999984321 1122 11211 1234666665 555666666
Q ss_pred HHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 006571 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 328 (640)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~ 328 (640)
++..+ + ..+|+|++ +++.+..++.+|+++|||||++|+|+
T Consensus 662 ~l~~~--------------------------~-------------stf~~e~~-~~~~il~~a~~psLlLLDEp~~Gtd~ 701 (800)
T 1wb9_A 662 DLASG--------------------------R-------------STFMVEMT-ETANILHNATEYSLVLMDEIGRGTST 701 (800)
T ss_dssp -----------------------------------------------CHHHHH-HHHHHHHHCCTTEEEEEESCCCCSSS
T ss_pred HHHhh--------------------------h-------------hhhhHHHH-HHHHHHHhccCCCEEEEECCCCCCCh
Confidence 55321 1 23566665 45555567899999999999999999
Q ss_pred HHHHHH-HHHHHHHHH-CCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecC
Q 006571 329 TTALRI-VQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (640)
Q Consensus 329 ~s~~~i-~~~L~~l~~-~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (640)
.....+ ...++.+.+ .|.|+|++||++. +..+||++..+.+|++.+...
T Consensus 702 ~d~~~i~~~ll~~l~~~~g~~vl~~TH~~e--l~~l~d~~~~v~n~~~~~~~~ 752 (800)
T 1wb9_A 702 YDGLSLAWACAENLANKIKALTLFATHYFE--LTQLPEKMEGVANVHLDALEH 752 (800)
T ss_dssp SHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHSTTEEEEEEEEEEE
T ss_pred hHHHHHHHHHHHHHHhccCCeEEEEeCCHH--HHHHhhhhhceEEEEEEEEEc
Confidence 877775 788888887 4999999999964 457899888888888876543
No 108
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.68 E-value=7.9e-18 Score=180.03 Aligned_cols=128 Identities=26% Similarity=0.320 Sum_probs=91.2
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHhccC
Q 006571 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRL 258 (640)
Q Consensus 179 ~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~ 258 (640)
.+.+|++++|+|||||||||||++|+|.+. +..+|.|...+.++....+...++++|.......++.
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~-~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~------------ 185 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLN-NTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGF------------ 185 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHH-HHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCH------------
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhccc-CCCCcEEEEccCcHHhhhhccccceeeeeeccccCCH------------
Confidence 678999999999999999999999999653 2225777655544432233344555554322211111
Q ss_pred CCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 006571 259 PNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 338 (640)
Q Consensus 259 ~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L 338 (640)
.+ +||++|..+|++|++|||| |.++. +.+
T Consensus 186 ----------------------------------------~~----~La~aL~~~PdvillDEp~---d~e~~----~~~ 214 (356)
T 3jvv_A 186 ----------------------------------------SE----ALRSALREDPDIILVGEMR---DLETI----RLA 214 (356)
T ss_dssp ----------------------------------------HH----HHHHHTTSCCSEEEESCCC---SHHHH----HHH
T ss_pred ----------------------------------------HH----HHHHHhhhCcCEEecCCCC---CHHHH----HHH
Confidence 11 9999999999999999999 66654 344
Q ss_pred HHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCC
Q 006571 339 QDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKG 372 (640)
Q Consensus 339 ~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G 372 (640)
.+++..|+|||+++|+.+. + ..+||++.|..|
T Consensus 215 ~~~~~~G~~vl~t~H~~~~-~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 215 LTAAETGHLVFGTLHTTSA-A-KTIDRVVDVFPA 246 (356)
T ss_dssp HHHHHTTCEEEEEESCSSH-H-HHHHHHHHTSCH
T ss_pred HHHHhcCCEEEEEEccChH-H-HHHHHHhhhcCc
Confidence 4456679999999999764 3 789999998654
No 109
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.66 E-value=1.1e-17 Score=165.46 Aligned_cols=168 Identities=16% Similarity=0.166 Sum_probs=110.9
Q ss_pred ccceeceEE-EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh-hcc---CcEEEEccCCCCCCCC
Q 006571 170 KDILNGITG-SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-SLK---SKIGFVTQDDVLFPHL 244 (640)
Q Consensus 170 ~~iL~~vs~-~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-~~~---~~i~yV~Q~~~l~~~l 244 (640)
.+.|+++.+ .+++|++++|+||||||||||++.|++... +.+|.|.+.+.+... .++ ..+++.+|+.... .+
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 85 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL--RDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEK-KL 85 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHH--HHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTT-TE
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH--HCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhC-CE
Confidence 467889886 899999999999999999999999997543 235666665443221 111 0112222211000 00
Q ss_pred CHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCC--EEEEeCC
Q 006571 245 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPS--LLFLDEP 322 (640)
Q Consensus 245 TV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~--iLlLDEP 322 (640)
.+ .. .. ...++ .. . .....|.++.++...+.....+|+ ++++|||
T Consensus 86 ~~-----------~~-~~------------~~~~~-~~----~----~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~ 132 (235)
T 2w0m_A 86 II-----------ID-AL------------MKEKE-DQ----W----SLVNLTPEELVNKVIEAKQKLGYGKARLVIDSV 132 (235)
T ss_dssp EE-----------EE-CC------------C-----CT----T----BCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETG
T ss_pred EE-----------Ee-cc------------ccccC-ce----e----eecCCCHHHHHHHHHHHHHhhCCCceEEEEECc
Confidence 00 00 00 00000 00 0 012459999999888888888999 9999999
Q ss_pred CCCC--CHHHHHHHHHHHHHHHH-CCCEEEEEeCCCC-------cHHHhccCEEEEEcCCe
Q 006571 323 TSGL--DSTTALRIVQMLQDIAE-AGKTVVTTIHQPS-------SRLFHKFDKLILLGKGS 373 (640)
Q Consensus 323 TsgL--D~~s~~~i~~~L~~l~~-~g~TvI~~tH~~~-------~~i~~~~D~i~vL~~G~ 373 (640)
|+++ |+....++++.|+++++ .|.|||+++|+.. ..+.+.||+|++|++.+
T Consensus 133 ~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~~ 193 (235)
T 2w0m_A 133 SALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRMI 193 (235)
T ss_dssp GGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEEE
T ss_pred hHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEEe
Confidence 9888 99999999999999875 5899999999972 33778899999998653
No 110
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.66 E-value=1.1e-18 Score=170.74 Aligned_cols=178 Identities=14% Similarity=0.101 Sum_probs=98.3
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC---CCcccEEEECCEeCCh
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME---PTVGGSITYNDHPYSK 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~---~~~~G~I~~~G~~~~~ 225 (640)
.|+++|++|.|. ..+|++ +.+.+|..++|+|+||||||||+|.|+|.... .+..|.+.+.+.-.
T Consensus 3 ~l~~~~~~~~~~---------~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~-- 69 (210)
T 1pui_A 3 NLNYQQTHFVMS---------APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFE-- 69 (210)
T ss_dssp --------CEEE---------ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEE--
T ss_pred chhhhhhhheee---------cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEE--
Confidence 478999999982 257888 88999999999999999999999999985410 13456554322100
Q ss_pred hccCcEEEEccCCCC----CCCCC---HHHHHHHHHhc-c----------CCCCccHHHHHHHHHHHHHHcCCCcccccc
Q 006571 226 SLKSKIGFVTQDDVL----FPHLT---VKETLTYAALL-R----------LPNTLTKQQKEKRAIDVINELGLERCQDTM 287 (640)
Q Consensus 226 ~~~~~i~yV~Q~~~l----~~~lT---V~Enl~~~~~~-~----------~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~ 287 (640)
+...+-++ +.+.+ .+.-. .+..+...... + .....+. ....+.++++..+++...
T Consensus 70 -~~~~~~l~-Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~--- 142 (210)
T 1pui_A 70 -VADGKRLV-DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKD--LDQQMIEWAVDSNIAVLV--- 142 (210)
T ss_dssp -EETTEEEE-ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCH--HHHHHHHHHHHTTCCEEE---
T ss_pred -ecCCEEEE-ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCch--hHHHHHHHHHHcCCCeEE---
Confidence 00011111 11110 00000 11122211110 0 0001111 223455566666665321
Q ss_pred ccCccCCcCCHHHHHH-HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCE
Q 006571 288 IGGSFVRGVSGGERKR-VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKT 347 (640)
Q Consensus 288 vg~~~~~~LSGGqrqR-v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~T 347 (640)
+++ +...+|+||||| +.++++++.+|+++++|||||++|.....++++.|.++..+|.|
T Consensus 143 v~n-K~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 143 LLT-KADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp EEE-CGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred EEe-cccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 122 245699999999 89999999999999999999999999999999999998765644
No 111
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.65 E-value=3.2e-18 Score=186.62 Aligned_cols=164 Identities=16% Similarity=0.202 Sum_probs=97.4
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhc
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (640)
..|+++||+++| +.+.+++|+||+| +|+||||||||||+|+|+|.....+..|.+.+++.+ ...
T Consensus 10 ~~l~~~~l~~~y--------~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~--t~~ 73 (418)
T 2qag_C 10 GYVGFANLPNQV--------YRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKK--TVQ 73 (418)
T ss_dssp -----CCCCCCT--------TTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-------CCE
T ss_pred CcEEEEecceeE--------CCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCcc--cee
Confidence 358999999876 3567999999998 999999999999999999965321212222222211 112
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHH
Q 006571 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (640)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (640)
++.+++++|++.+++.+||.||+.++.... .......+.+.++ ..++.+++||++||
T Consensus 74 ~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~------~~~~~~~i~~~i~-----------------~~~~~~l~qr~~Ia 130 (418)
T 2qag_C 74 VEQSKVLIKEGGVQLLLTIVDTPGFGDAVD------NSNCWQPVIDYID-----------------SKFEDYLNAESRVN 130 (418)
T ss_dssp EEEEECC------CEEEEEEECC-----------------CHHHHHHHH-----------------HHHHHHTTTSCC-C
T ss_pred eeeEEEEEecCCcccceeeeechhhhhhcc------chhhHHHHHHHHH-----------------HHHHHHHHHHHHHH
Confidence 356899999998888899999998764321 1111111222221 13566788899999
Q ss_pred HHHhhCCC---EEEEeCCC-CCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCC
Q 006571 308 NEIIINPS---LLFLDEPT-SGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 355 (640)
Q Consensus 308 ~aL~~~P~---iLlLDEPT-sgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~ 355 (640)
|+++.+|+ +|++|||| .+||+... ++++.+.. +.+||+++|..
T Consensus 131 Ral~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~~-~v~iIlVinK~ 177 (418)
T 2qag_C 131 RRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLHE-KVNIIPLIAKA 177 (418)
T ss_dssp CCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHTT-TSEEEEEEEST
T ss_pred HHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHhc-cCcEEEEEEcc
Confidence 99999999 99999999 69999873 44445543 78888888874
No 112
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.63 E-value=4.6e-16 Score=160.27 Aligned_cols=151 Identities=17% Similarity=0.212 Sum_probs=104.6
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHhccC
Q 006571 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRL 258 (640)
Q Consensus 179 ~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~ 258 (640)
-+++|++++|+||||||||||++.|++... .|.++ .|.+... ...+.|+..++..- .+.+.+.- +..
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~----~g~~~-~g~~~~~--~~~v~~~~~e~~~~---~~~~r~~~---~g~ 92 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA----GGPDL-LEVGELP--TGPVIYLPAEDPPT---AIHHRLHA---LGA 92 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH----TCCCT-TCCCCCC--CCCEEEEESSSCHH---HHHHHHHH---HHT
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh----cCCCc-CCCccCC--CccEEEEECCCCHH---HHHHHHHH---HHh
Confidence 488999999999999999999999998432 45553 3443321 34688887765320 12222211 101
Q ss_pred CCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCC--CCCHHHH---HH
Q 006571 259 PNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS--GLDSTTA---LR 333 (640)
Q Consensus 259 ~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTs--gLD~~s~---~~ 333 (640)
.... ....++++.+++.+..+. .+..||+||+|++ ++++.+|+++++||||+ ++|.... .+
T Consensus 93 --~~~~----~~~~~~~~~l~l~~~~~~-----~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~ 158 (279)
T 1nlf_A 93 --HLSA----EERQAVADGLLIQPLIGS-----LPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQ 158 (279)
T ss_dssp --TSCH----HHHHHHHHHEEECCCTTS-----CCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHH
T ss_pred --hcCh----hhhhhccCceEEeecCCC-----CcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHH
Confidence 1121 234566777877665443 3568999998865 68889999999999999 9998544 88
Q ss_pred HHHHHHHHHH-CCCEEEEEeCCCC
Q 006571 334 IVQMLQDIAE-AGKTVVTTIHQPS 356 (640)
Q Consensus 334 i~~~L~~l~~-~g~TvI~~tH~~~ 356 (640)
+++.|+++++ .|+|||+++|+..
T Consensus 159 ~~~~L~~l~~~~g~tvi~i~H~~~ 182 (279)
T 1nlf_A 159 VIGRMEAIAADTGCSIVFLHHASK 182 (279)
T ss_dssp HHHHHHHHHHHHCCEEEEEEEC--
T ss_pred HHHHHHHHHHHcCCEEEEEecCCC
Confidence 8899999864 5999999999854
No 113
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.61 E-value=2.6e-17 Score=164.51 Aligned_cols=149 Identities=17% Similarity=0.174 Sum_probs=103.6
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CcccEEEECCEeCChhccCcEEEEccCCCCCCCCCH----HHHHH
Q 006571 177 TGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTV----KETLT 251 (640)
Q Consensus 177 s~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~-~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV----~Enl~ 251 (640)
.-..++|++++|+||||||||||+++|+|... | ...|.|.+++++.....++.++|++|++..|+.+++ .||+.
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~-p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~ 88 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQP-LYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAE 88 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSC-TTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEE
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCC-CCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHH
Confidence 34678999999999999999999999999653 2 368999999987655445679999998766654444 22221
Q ss_pred HHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 006571 252 YAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTA 331 (640)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~ 331 (640)
+... . .+.| +++ +..++..++++||| ||+.++
T Consensus 89 ~~~~-----------------------------------~--yg~~---~~~---v~~~l~~G~illLD-----LD~~~~ 120 (219)
T 1s96_A 89 VFGN-----------------------------------Y--YGTS---REA---IEQVLATGVDVFLD-----IDWQGA 120 (219)
T ss_dssp ETTE-----------------------------------E--EEEE---HHH---HHHHHTTTCEEEEE-----CCHHHH
T ss_pred HHhc-----------------------------------c--CCCC---HHH---HHHHHhcCCeEEEE-----ECHHHH
Confidence 1100 0 0111 121 34555668999999 999999
Q ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHHHHH
Q 006571 332 LRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFS 388 (640)
Q Consensus 332 ~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~~f~ 388 (640)
..+.+.+. +++||++++|++.. +. .|+ +.+| .++++++...+.
T Consensus 121 ~~i~~~l~----~~~tI~i~th~~~~-l~---~Rl--~~rG----~~~~e~i~~rl~ 163 (219)
T 1s96_A 121 QQIRQKMP----HARSIFILPPSKIE-LD---RRL--RGRG----QDSEEVIAKRMA 163 (219)
T ss_dssp HHHHHHCT----TCEEEEEECSSHHH-HH---HHH--HTTS----CSCHHHHHHHHH
T ss_pred HHHHHHcc----CCEEEEEECCCHHH-HH---HHH--HHcC----CCCHHHHHHHHH
Confidence 99999876 58999999999653 32 343 7778 678888876664
No 114
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.58 E-value=1.2e-19 Score=175.84 Aligned_cols=170 Identities=13% Similarity=0.063 Sum_probs=113.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCc
Q 006571 183 GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTL 262 (640)
Q Consensus 183 Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~ 262 (640)
|++++|+||||||||||+++|++. .+|.+.++|.++... ..+++++|.....+.+|+++++.+.+....
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~-----~~g~~~i~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---- 70 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQ-----LDNSAYIEGDIINHM--VVGGYRPPWESDELLALTWKNITDLTVNFL---- 70 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH-----SSSEEEEEHHHHHTT--CCTTCCCGGGCHHHHHHHHHHHHHHHHHHH----
T ss_pred CeEEEEECCCCCcHHHHHHHHhcc-----cCCeEEEcccchhhh--hccccccCccchhHHHHHHHHHHHHHHHHH----
Confidence 789999999999999999999972 368999998765322 235677776654555688888876532110
Q ss_pred cHHHHHHHHHHHHHHcCCCccccccccC---ccCCcC--CHHHHHHHHHHH------HHhhCCCEEEEeCCCCCCCHHHH
Q 006571 263 TKQQKEKRAIDVINELGLERCQDTMIGG---SFVRGV--SGGERKRVCIGN------EIIINPSLLFLDEPTSGLDSTTA 331 (640)
Q Consensus 263 ~~~~~~~~v~~~l~~lgL~~~~~t~vg~---~~~~~L--SGGqrqRv~IA~------aL~~~P~iLlLDEPTsgLD~~s~ 331 (640)
. -+.....+...+. ...+.+ |+|++|++.++. +++.+|+...+|+ +||+...
T Consensus 71 -------------~-~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~ 133 (189)
T 2bdt_A 71 -------------L-AQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCL 133 (189)
T ss_dssp -------------H-TTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGG
T ss_pred -------------h-cCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHH
Confidence 0 0100001110000 011234 889888888888 9999999888884 8999888
Q ss_pred HHHHHHHHHHHHCCCEEEEEeCC-CCcHHHhccCEEEEEcCCeEEEecChHHHH
Q 006571 332 LRIVQMLQDIAEAGKTVVTTIHQ-PSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (640)
Q Consensus 332 ~~i~~~L~~l~~~g~TvI~~tH~-~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (640)
.. .+.++.+.+.+.++|.++|. +.+ +.+.||+|+ ++|+++..|+++-+.
T Consensus 134 ~~-~~~~~~~~~~~~~ii~tsh~~~~~-~e~~~~~i~--~~g~~~~~~~~~~~~ 183 (189)
T 2bdt_A 134 EL-VEEFESKGIDERYFYNTSHLQPTN-LNDIVKNLK--TNPRFIFCMAGDPLE 183 (189)
T ss_dssp HH-HHHHHHTTCCTTSEEECSSSCGGG-HHHHHHHHH--HCGGGSCC-------
T ss_pred HH-HHHHhhcCCCccEEEeCCCCChhh-HHHHHHHHh--hCCcEEEeecCCchh
Confidence 87 88888776567899999998 654 778899998 999999999887653
No 115
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.57 E-value=1.5e-14 Score=139.39 Aligned_cols=90 Identities=18% Similarity=0.304 Sum_probs=73.1
Q ss_pred CCcCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEE
Q 006571 293 VRGVSGGERKRVCIGNEIII----NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLIL 368 (640)
Q Consensus 293 ~~~LSGGqrqRv~IA~aL~~----~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~v 368 (640)
+..||||||||++||++|+. +|+++||||||+|||+.+...+.+.|+++.+ +.++|+++|+. .+...||+++.
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~--~~~~~ad~i~~ 138 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRD--VMMANADKIIG 138 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCH--HHHTTCSEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecH--HHHHhCCEEEE
Confidence 46799999999999999974 4699999999999999999999999999865 56899999995 35789999986
Q ss_pred E--cCCeE-EEecChHHHHH
Q 006571 369 L--GKGSL-LYFGKASEAMA 385 (640)
Q Consensus 369 L--~~G~i-v~~G~~~~~~~ 385 (640)
+ .+|.. +...+.++...
T Consensus 139 v~~~~g~s~~~~~~~~~~~~ 158 (173)
T 3kta_B 139 VSMRDGVSKVVSLSLEKAMK 158 (173)
T ss_dssp EEEETTEEEEEECCHHHHHH
T ss_pred EEecCCEEEEEEEEcHHHHH
Confidence 5 46743 33444444443
No 116
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.57 E-value=1.1e-15 Score=150.25 Aligned_cols=155 Identities=20% Similarity=0.210 Sum_probs=100.8
Q ss_pred ccceeceE-EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHH
Q 006571 170 KDILNGIT-GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248 (640)
Q Consensus 170 ~~iL~~vs-~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~E 248 (640)
.+.|+++. +-+++|++++|+||||||||||++.|++ . . ++. +.|+..++.+ +..
T Consensus 6 ~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~--~-~~~---------------v~~i~~~~~~----~~~- 60 (220)
T 2cvh_A 6 TKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--L--S-GKK---------------VAYVDTEGGF----SPE- 60 (220)
T ss_dssp CHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--H--H-CSE---------------EEEEESSCCC----CHH-
T ss_pred cHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--H--c-CCc---------------EEEEECCCCC----CHH-
Confidence 35677776 4899999999999999999999999998 1 1 222 2233332211 111
Q ss_pred HHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHH--HHHHHHHHHHhhC-CCEEEEeCCCCC
Q 006571 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE--RKRVCIGNEIIIN-PSLLFLDEPTSG 325 (640)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGq--rqRv~IA~aL~~~-P~iLlLDEPTsg 325 (640)
.+.-... .. .... +++++.+. +...++++ +++++.+++++.+ |+++++||||+.
T Consensus 61 ~~~~~~~-~~--~~~~-------~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~ 117 (220)
T 2cvh_A 61 RLVQMAE-TR--GLNP-------EEALSRFI-------------LFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAH 117 (220)
T ss_dssp HHHHHHH-TT--TCCH-------HHHHHHEE-------------EECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCC
T ss_pred HHHHHHH-hc--CCCh-------HHHhhcEE-------------EEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHH
Confidence 1110000 00 1111 11222221 12344443 6788889999986 999999999999
Q ss_pred CCHHH--------HHHHHHHHHHHHHC-CCEEEEEeCCCCc------------HHHhccCEEEEEcCC
Q 006571 326 LDSTT--------ALRIVQMLQDIAEA-GKTVVTTIHQPSS------------RLFHKFDKLILLGKG 372 (640)
Q Consensus 326 LD~~s--------~~~i~~~L~~l~~~-g~TvI~~tH~~~~------------~i~~~~D~i~vL~~G 372 (640)
+|+.. ..++++.|++++++ |.|||+++|.... .+...||.+++|++.
T Consensus 118 l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 118 YRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp TTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred hhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 99743 25566778888754 8999999998542 466789999999764
No 117
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.54 E-value=1.3e-16 Score=173.64 Aligned_cols=174 Identities=11% Similarity=0.127 Sum_probs=111.8
Q ss_pred cccceeceEEEEeCCeE--EEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCH
Q 006571 169 EKDILNGITGSVNPGEV--LALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTV 246 (640)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~--~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV 246 (640)
+.+ |++||+++++|++ ++|+||||||||||+|+|+|... .|.-. .... ....++.++|++|++.+++.+||
T Consensus 27 ~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l----~g~~~-~~~~-~~~~~~~i~~v~Q~~~l~~~ltv 99 (427)
T 2qag_B 27 SLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF----EGEPA-THTQ-PGVQLQSNTYDLQESNVRLKLTI 99 (427)
T ss_dssp --C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC------------CC-SSCEEEEEEEEEEC--CEEEEEE
T ss_pred Cee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc----cCCcC-CCCC-ccceEeeEEEEeecCccccccch
Confidence 345 9999999999999 99999999999999999999532 22111 0000 11234579999999998888999
Q ss_pred HHHHHHHHhccCCCCc-cH---HHHHHHHHHHHHHc-CCCc----ccccc----cc--CccCCcCCHHHHHHHHHHHHHh
Q 006571 247 KETLTYAALLRLPNTL-TK---QQKEKRAIDVINEL-GLER----CQDTM----IG--GSFVRGVSGGERKRVCIGNEII 311 (640)
Q Consensus 247 ~Enl~~~~~~~~~~~~-~~---~~~~~~v~~~l~~l-gL~~----~~~t~----vg--~~~~~~LSGGqrqRv~IA~aL~ 311 (640)
.||+.|+.... ... .. ........+.+... ++.. ..|+. +. .....+|+-.+ +.|+++|.
T Consensus 100 ~D~~~~g~~~~--~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk~L~ 174 (427)
T 2qag_B 100 VSTVGFGDQIN--KEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMKKLD 174 (427)
T ss_dssp EEEECCCC-CC--HHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHHHHHTC
T ss_pred hhhhhhhhccc--cchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHHHHHHh
Confidence 99997753210 000 00 11233455556554 4431 12221 10 01113566666 78999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHHCCCEEEEEeCC
Q 006571 312 INPSLLFLDEPTSGLDSTTALRIVQMLQD-IAEAGKTVVTTIHQ 354 (640)
Q Consensus 312 ~~P~iLlLDEPTsgLD~~s~~~i~~~L~~-l~~~g~TvI~~tH~ 354 (640)
.+++|+++|||+..|.+.....+.+.+++ +...|..|+.++.+
T Consensus 175 ~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 175 SKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp SCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred hCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 99999999999999999988999999986 76779999888754
No 118
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.53 E-value=1.2e-15 Score=164.16 Aligned_cols=131 Identities=21% Similarity=0.323 Sum_probs=99.2
Q ss_pred cceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCc-ccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHH
Q 006571 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTV-GGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKET 249 (640)
Q Consensus 171 ~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~-~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~En 249 (640)
.+|++++ +++|++++|+||||||||||+++|+|.+. +. +|+|.+.|.++...++..++||+|..
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~--~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~----------- 190 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDPIEYVFKHKKSIVNQRE----------- 190 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHH--HHSCCEEEEEESSCCSCCCCSSSEEEEEE-----------
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcC--cCCCcEEEEecccHhhhhccCceEEEeee-----------
Confidence 4678776 89999999999999999999999998543 33 69998877766434566788888841
Q ss_pred HHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 006571 250 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST 329 (640)
Q Consensus 250 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~ 329 (640)
+|+. +..+ +.+|+++|..+|++|++|||+ |+.
T Consensus 191 ----------------------------~g~~-----------~~~~------~~~l~~~L~~~pd~illdE~~---d~e 222 (372)
T 2ewv_A 191 ----------------------------VGED-----------TKSF------ADALRAALREDPDVIFVGEMR---DLE 222 (372)
T ss_dssp ----------------------------BTTT-----------BSCS------HHHHHHHTTSCCSEEEESCCC---SHH
T ss_pred ----------------------------cCCC-----------HHHH------HHHHHHHhhhCcCEEEECCCC---CHH
Confidence 2221 0234 469999999999999999999 776
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEc
Q 006571 330 TALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (640)
Q Consensus 330 s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~ 370 (640)
+... .++. +..|.+|++++|+.+ +...+||++.|.
T Consensus 223 ~~~~---~l~~-~~~g~~vi~t~H~~~--~~~~~~rl~~l~ 257 (372)
T 2ewv_A 223 TVET---ALRA-AETGHLVFGTLHTNT--AIDTIHRIVDIF 257 (372)
T ss_dssp HHHH---HHHH-HTTTCEEEECCCCCS--HHHHHHHHHHTS
T ss_pred HHHH---HHHH-HhcCCEEEEEECcch--HHHHHHHHHHhc
Confidence 6433 3443 356899999999954 567889987764
No 119
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.51 E-value=7.4e-16 Score=148.72 Aligned_cols=153 Identities=12% Similarity=0.025 Sum_probs=96.2
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChh--ccCcEEEEccCCCCCCCCCHHHHHHHHHhc
Q 006571 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS--LKSKIGFVTQDDVLFPHLTVKETLTYAALL 256 (640)
Q Consensus 179 ~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~--~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~ 256 (640)
.+++|++++|+||||||||||+++|+|. +..|.|.++|.++... .++.++|++|+.. +.+||.||+.+.+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~----~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~ 78 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL----PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGR 78 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC----SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc----cCCCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHH
Confidence 4779999999999999999999999985 2369999999875322 1234678888654 357899998765421
Q ss_pred cCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH
Q 006571 257 RLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ 336 (640)
Q Consensus 257 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~ 336 (640)
...... ...++.++..+++..... . +..+..+|+|++||+.++|++.++|+++ +|+.....+.+
T Consensus 79 ~~~~~~-----~~~~~~~~~~~~l~~~~~--~-~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~ 142 (191)
T 1zp6_A 79 YAKEGY-----FVILDGVVRPDWLPAFTA--L-ARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHS 142 (191)
T ss_dssp HHHTSC-----EEEECSCCCTTTTHHHHT--T-CSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHH
T ss_pred HhccCC-----eEEEeccCcHHHHHHHHh--c-CCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHH
Confidence 100000 000000001111111110 0 1123469999999999999999999876 68888777777
Q ss_pred HHHHHHHCCCEEEEEeC
Q 006571 337 MLQDIAEAGKTVVTTIH 353 (640)
Q Consensus 337 ~L~~l~~~g~TvI~~tH 353 (640)
.++.+...+..+|.++|
T Consensus 143 ~~~~l~~~~~~~i~t~~ 159 (191)
T 1zp6_A 143 QFADLGAFEHHVLPVSG 159 (191)
T ss_dssp HTTCCGGGGGGEEECTT
T ss_pred HHhccCcccccEEECCC
Confidence 77665432334444443
No 120
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.51 E-value=6.8e-16 Score=165.43 Aligned_cols=152 Identities=19% Similarity=0.205 Sum_probs=107.9
Q ss_pred EEEeEEEE---Eeeccccccccccce---------eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEE
Q 006571 151 KFTDVTYK---VILKGMTSSEEKDIL---------NGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITY 218 (640)
Q Consensus 151 ~~~~vs~~---~~~~~~~~~~~~~iL---------~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~ 218 (640)
+|+|++|+ |+. .++.+| +++|+.+++|++++|+||||||||||+++|+|.+ + +.+|.|.+
T Consensus 137 ~f~~v~f~~~~Y~~------~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~-~-~~~g~I~i 208 (361)
T 2gza_A 137 FFKHVRPMSKSLTP------FEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEI-P-FDQRLITI 208 (361)
T ss_dssp TTSCCCCSCSCCCH------HHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTS-C-TTSCEEEE
T ss_pred CcCccccccccccc------hhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcC-C-CCceEEEE
Confidence 67788876 521 123455 9999999999999999999999999999999854 3 46899999
Q ss_pred CCEeC-C-hhccCcEEEEc-cCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCc
Q 006571 219 NDHPY-S-KSLKSKIGFVT-QDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRG 295 (640)
Q Consensus 219 ~G~~~-~-~~~~~~i~yV~-Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~ 295 (640)
+|..- . ...++.++|++ |++.+ +
T Consensus 209 e~~~e~~~~~~~~~v~~v~~q~~~~------------------------------------------------------~ 234 (361)
T 2gza_A 209 EDVPELFLPDHPNHVHLFYPSEAKE------------------------------------------------------E 234 (361)
T ss_dssp ESSSCCCCTTCSSEEEEECC------------------------------------------------------------
T ss_pred CCccccCccccCCEEEEeecCcccc------------------------------------------------------c
Confidence 98532 2 12567789998 65432 0
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCe
Q 006571 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (640)
Q Consensus 296 LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~ 373 (640)
++++..+|-.|+.++..+|+.+++|||+. .++.+.|+.+.....|++.++|..+ ....+||+..+..|.
T Consensus 235 ~~~~~t~~~~i~~~l~~~pd~~l~~e~r~-------~~~~~~l~~l~~g~~~~l~t~H~~~--~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 235 ENAPVTAATLLRSCLRMKPTRILLAELRG-------GEAYDFINVAASGHGGSITSCHAGS--CELTFERLALMVLQN 303 (361)
T ss_dssp ----CCHHHHHHHHTTSCCSEEEESCCCS-------THHHHHHHHHHTTCCSCEEEEECSS--HHHHHHHHHHHHTTS
T ss_pred cccccCHHHHHHHHHhcCCCEEEEcCchH-------HHHHHHHHHHhcCCCeEEEEECCCC--HHHHHHHHHHHHhcc
Confidence 11222355666667777899999999986 2455667766554458899999965 567889999988764
No 121
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.50 E-value=5.7e-18 Score=181.58 Aligned_cols=162 Identities=13% Similarity=0.091 Sum_probs=102.8
Q ss_pred ceeceEEEEeC--CeEEEEECCCCCcHHHHHHHHHcCCCCCCcc----cEEEEC----CEeCC---hhccCcEEEEccCC
Q 006571 172 ILNGITGSVNP--GEVLALMGPSGSGKTTLLNLLSGRLMEPTVG----GSITYN----DHPYS---KSLKSKIGFVTQDD 238 (640)
Q Consensus 172 iL~~vs~~i~~--Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~----G~I~~~----G~~~~---~~~~~~i~yV~Q~~ 238 (640)
+.+.|++.|.+ |+.++|+||||||||||+++|+|.+. +.+ |+|.++ |.+.. ..+ +.|++++|+.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~--~~~~~e~G~i~i~~~~~~~~~~~~~~~~-~~I~~~~q~~ 233 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFN--TTSAWEYGREFVFEKLGGDEQAMQYSDY-PQMALGHQRY 233 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTT--CEEECCTTHHHHHHSSSSCTTSSCTTTH-HHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhC--CCcchhhHHHHHHhhcCCCcccCChhHH-HHHHHHHHHH
Confidence 56789999999 99999999999999999999999653 346 776653 22210 011 2233433332
Q ss_pred CCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHh-hCCCEE
Q 006571 239 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII-INPSLL 317 (640)
Q Consensus 239 ~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~-~~P~iL 317 (640)
.+++ .|+.|||.+. ..+..++ .+..+|+|++||..+++++. .+|+++
T Consensus 234 ~~~~-~t~~~nl~~~--------------------------~~~~~~~-----~~~~~~~~~~~~~~i~~~~~~~~~~ll 281 (365)
T 1lw7_A 234 IDYA-VRHSHKIAFI--------------------------DTDFITT-----QAFCIQYEGKAHPFLDSMIKEYPFDVT 281 (365)
T ss_dssp HHHH-HHHCSSEEEE--------------------------SSCHHHH-----HHHHHHHHSCCCHHHHHHHHHSCCSEE
T ss_pred HHHH-HhccCCEEEE--------------------------eCCchHH-----HHHHHHHcCCCCHHHHHHHhhcCCCEE
Confidence 2221 2222222211 0000111 11246677788888888775 599999
Q ss_pred EEeC---CC------CCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCcHHHhccCEEEEEc
Q 006571 318 FLDE---PT------SGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLG 370 (640)
Q Consensus 318 lLDE---PT------sgLD~~s~~~i~~~L~~l~~-~g~TvI~~tH~~~~~i~~~~D~i~vL~ 370 (640)
|||| |+ .++|+..+..+.+.|+++.+ .+.+||+++|. . ...+++|++.+++
T Consensus 282 lLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~-~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 282 ILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-S-YLDRYNQVKAVIE 342 (365)
T ss_dssp EEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-S-HHHHHHHHHHHHH
T ss_pred EECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-C-HHHHHHHHHHHHH
Confidence 9999 65 58999999999999998764 48899999975 3 3456667665554
No 122
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.48 E-value=3.6e-17 Score=165.35 Aligned_cols=153 Identities=15% Similarity=0.191 Sum_probs=101.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHH---cCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHhccC
Q 006571 182 PGEVLALMGPSGSGKTTLLNLLS---GRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRL 258 (640)
Q Consensus 182 ~Ge~~aIvGpsGsGKSTLl~~L~---G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~ 258 (640)
++++++|+||||||||||+++|+ |... +..|+|.++|.+........+.+++|+..+++..++.+++........
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~--~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~~ 103 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQH--LSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENRR 103 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCC--EEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTCT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeE--ecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 47999999999999999999999 9543 457888887765433333445667888888888899999987532100
Q ss_pred C-----CCccHHHHHHHHHHHHHHcCCC--ccc-------cccccCccCCcCCHHHHHHHHHHHHH-hhCCCEEEEe---
Q 006571 259 P-----NTLTKQQKEKRAIDVINELGLE--RCQ-------DTMIGGSFVRGVSGGERKRVCIGNEI-IINPSLLFLD--- 320 (640)
Q Consensus 259 ~-----~~~~~~~~~~~v~~~l~~lgL~--~~~-------~t~vg~~~~~~LSGGqrqRv~IA~aL-~~~P~iLlLD--- 320 (640)
. ...+... ..++.+....... -.. -..+.++.+..||| |+ ++| +.+|++++||
T Consensus 104 ~~~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~ 174 (246)
T 2bbw_A 104 GQHWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVT 174 (246)
T ss_dssp TSCEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTTT
T ss_pred CCeEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCccccccccc
Confidence 0 0111111 1122221111111 000 01112334567999 66 777 9999999999
Q ss_pred -CCCCCCCHHHHHHHHHHHHHHHHCC
Q 006571 321 -EPTSGLDSTTALRIVQMLQDIAEAG 345 (640)
Q Consensus 321 -EPTsgLD~~s~~~i~~~L~~l~~~g 345 (640)
|||++||..+...+.+.|+++.+++
T Consensus 175 ~EP~~~ld~~~~~~i~~~l~~~~~~~ 200 (246)
T 2bbw_A 175 GEPLVQQEDDKPEAVAARLRQYKDVA 200 (246)
T ss_dssp CCBCBCCGGGSHHHHHHHHHHHHHHH
T ss_pred ccccccCCCCcHHHHHHHHHHHHHhH
Confidence 9999999999999999999887654
No 123
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.47 E-value=1.4e-17 Score=175.42 Aligned_cols=156 Identities=17% Similarity=0.114 Sum_probs=102.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCC------CCcccEEEECCEeCCh-------------------hccCcEEEE---c
Q 006571 184 EVLALMGPSGSGKTTLLNLLSGRLME------PTVGGSITYNDHPYSK-------------------SLKSKIGFV---T 235 (640)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G~~~~------~~~~G~I~~~G~~~~~-------------------~~~~~i~yV---~ 235 (640)
++++|+|+||||||||+|.|.|.... .+..|+|.+||.++.. .+++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 68999999999999999999985411 2468999999988642 123457777 6
Q ss_pred cCCCCCCCCCHHHHHHHHHhccCCCCc---cHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhh
Q 006571 236 QDDVLFPHLTVKETLTYAALLRLPNTL---TKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIII 312 (640)
Q Consensus 236 Q~~~l~~~lTV~Enl~~~~~~~~~~~~---~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~ 312 (640)
|++.+++..+|.||+.++.....-..+ .......++..++..+++.+..+.. .++|+||+||+..+++++.
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~------~~ls~g~~Q~~~ad~ill~ 158 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQM------NQFTIAQSQVGYADRILLT 158 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHH------HHCHHHHHHHHTCSEEEEE
T ss_pred hcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHH------hhchHHHHHHHhCCEEEEE
Confidence 777666677888877653100000000 0000000111122233343333322 2689999999988888888
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCc
Q 006571 313 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSS 357 (640)
Q Consensus 313 ~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~ 357 (640)
+|+++ ||| ..+.+.|+++. .+.||++++|++.+
T Consensus 159 k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~~ 191 (318)
T 1nij_A 159 KTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDID 191 (318)
T ss_dssp CTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCCC
T ss_pred CcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCCC
Confidence 99887 888 67888888874 58899999998653
No 124
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.44 E-value=5.8e-15 Score=162.78 Aligned_cols=153 Identities=14% Similarity=0.151 Sum_probs=105.0
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--------h--ccCcEEEEccCCCCCC
Q 006571 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--------S--LKSKIGFVTQDDVLFP 242 (640)
Q Consensus 173 L~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--------~--~~~~i~yV~Q~~~l~~ 242 (640)
-+++||++++|++++|+||||||||||+++|+|.+. +.+|+|.++|.+... . .++.|+|++|+..+++
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~--~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p 360 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFE--QQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADS 360 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhh--hcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCH
Confidence 468999999999999999999999999999999654 358999998776532 1 2567999999988888
Q ss_pred CCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHh-hCC-CEEEEe
Q 006571 243 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII-INP-SLLFLD 320 (640)
Q Consensus 243 ~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~-~~P-~iLlLD 320 (640)
.+||++|+.++..... ++ -+++..|+.+... .+-.--+|++.+++++. ..| .+||..
T Consensus 361 ~~tV~e~l~~a~~~~~--Dv----------VLIDTaGrl~~~~---------~lm~EL~kiv~iar~l~~~~P~evLLvL 419 (503)
T 2yhs_A 361 ASVIFDAIQAAKARNI--DV----------LIADTAGRLQNKS---------HLMEELKKIVRVMKKLDVEAPHEVMLTI 419 (503)
T ss_dssp HHHHHHHHHHHHHTTC--SE----------EEECCCCSCCCHH---------HHHHHHHHHHHHHHTTCTTCSSEEEEEE
T ss_pred HHHHHHHHHHHHhcCC--CE----------EEEeCCCccchhh---------hHHHHHHHHHHHHHHhccCCCCeeEEEe
Confidence 8999999998743110 00 0112222221111 12223357888888764 456 356555
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCC
Q 006571 321 EPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQ 354 (640)
Q Consensus 321 EPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~tH~ 354 (640)
+||+|.|.. +.++.+.+ .+.|.|++||-
T Consensus 420 DattGq~al------~~ak~f~~~~~itgvIlTKL 448 (503)
T 2yhs_A 420 DASTGQNAV------SQAKLFHEAVGLTGITLTKL 448 (503)
T ss_dssp EGGGTHHHH------HHHHHHHHHTCCSEEEEECG
T ss_pred cCcccHHHH------HHHHHHHhhcCCCEEEEEcC
Confidence 688886554 33444443 48899999994
No 125
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.44 E-value=3.1e-13 Score=145.13 Aligned_cols=78 Identities=27% Similarity=0.392 Sum_probs=68.1
Q ss_pred ccCCcCCHHHHHHH------HHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhcc
Q 006571 291 SFVRGVSGGERKRV------CIGNEIIIN-PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKF 363 (640)
Q Consensus 291 ~~~~~LSGGqrqRv------~IA~aL~~~-P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~ 363 (640)
..+..||||||||+ ++|++|+.+ |++|||||||+|||+..+..+.+.|+++. .+.+||++||++. +...|
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~th~~~--~~~~~ 352 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK-SIPQMIIITHHRE--LEDVA 352 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC-SCSEEEEEESCGG--GGGGC
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc-cCCeEEEEEChHH--HHhhC
Confidence 34568999999988 567889999 99999999999999999999999999874 3569999999964 56889
Q ss_pred CEEEEEcC
Q 006571 364 DKLILLGK 371 (640)
Q Consensus 364 D~i~vL~~ 371 (640)
|++++|++
T Consensus 353 d~~~~l~k 360 (371)
T 3auy_A 353 DVIINVKK 360 (371)
T ss_dssp SEEEEEEE
T ss_pred CEEEEEEe
Confidence 99999973
No 126
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.44 E-value=1.3e-13 Score=137.48 Aligned_cols=158 Identities=20% Similarity=0.311 Sum_probs=88.5
Q ss_pred ceeceE-EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC-----cccEEEECCEeCChhccCcEEEEccCCCCCCCCC
Q 006571 172 ILNGIT-GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT-----VGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLT 245 (640)
Q Consensus 172 iL~~vs-~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~-----~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lT 245 (640)
.|+.+- +-+++|++++|+||||||||||++.|++....++ ..|.+++++.+.. .
T Consensus 12 ~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~--------------------~ 71 (243)
T 1n0w_A 12 ELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTF--------------------R 71 (243)
T ss_dssp HHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCC--------------------C
T ss_pred HHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCc--------------------C
Confidence 344443 5799999999999999999999999998422122 3466666655320 1
Q ss_pred HHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHH-HHHHHHHh--hCCCEEEEeCC
Q 006571 246 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR-VCIGNEII--INPSLLFLDEP 322 (640)
Q Consensus 246 V~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR-v~IA~aL~--~~P~iLlLDEP 322 (640)
..+-........ ...+ ++++.+.+ ....+..+... +.-+.+++ .+|+++++|||
T Consensus 72 ~~~~~~~~~~~g----~~~~-------~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~ 128 (243)
T 1n0w_A 72 PERLLAVAERYG----LSGS-------DVLDNVAY------------ARAFNTDHQTQLLYQASAMMVESRYALLIVDSA 128 (243)
T ss_dssp HHHHHHHHHHTT----CCHH-------HHHHTEEE------------EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETS
T ss_pred HHHHHHHHHHcC----CCHH-------HHhhCeEE------------EecCCHHHHHHHHHHHHHHHhcCCceEEEEeCc
Confidence 110000000000 0000 11111100 11244444332 23333343 48999999999
Q ss_pred CCCCCHH-------H-----HHHHHHHHHHHHHC-CCEEEEEeCCCCcH------------------HHhccCEEEEEcC
Q 006571 323 TSGLDST-------T-----ALRIVQMLQDIAEA-GKTVVTTIHQPSSR------------------LFHKFDKLILLGK 371 (640)
Q Consensus 323 TsgLD~~-------s-----~~~i~~~L~~l~~~-g~TvI~~tH~~~~~------------------i~~~~D~i~vL~~ 371 (640)
++.+|+. . ...++..|++++++ |.|||+++|..... +...||.+++|++
T Consensus 129 ~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~ 208 (243)
T 1n0w_A 129 TALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRK 208 (243)
T ss_dssp SGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEE
T ss_pred hHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEE
Confidence 9999985 3 34566667776654 99999999964321 2227899999987
Q ss_pred C
Q 006571 372 G 372 (640)
Q Consensus 372 G 372 (640)
|
T Consensus 209 ~ 209 (243)
T 1n0w_A 209 G 209 (243)
T ss_dssp C
T ss_pred c
Confidence 5
No 127
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.42 E-value=7.8e-16 Score=148.03 Aligned_cols=136 Identities=20% Similarity=0.258 Sum_probs=88.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCC--cccEEEECCEeCC-------hhcc-CcEE----EEccCCCCCCCCCHHHH
Q 006571 184 EVLALMGPSGSGKTTLLNLLSGRLMEPT--VGGSITYNDHPYS-------KSLK-SKIG----FVTQDDVLFPHLTVKET 249 (640)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G~~~~~~--~~G~I~~~G~~~~-------~~~~-~~i~----yV~Q~~~l~~~lTV~En 249 (640)
++++|+|+||||||||+++|+|.+. +. ..|.|.+||.++. +.+| +.+| +++|+..+| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~-~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR-ERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH-HTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE-
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh-hcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec-
Confidence 5899999999999999999998543 22 2699999998742 2344 3567 889987765 110
Q ss_pred HHHHHhccCCCCccHHHHHHHHHHHHHH-cCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEE-------EEeC
Q 006571 250 LTYAALLRLPNTLTKQQKEKRAIDVINE-LGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL-------FLDE 321 (640)
Q Consensus 250 l~~~~~~~~~~~~~~~~~~~~v~~~l~~-lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iL-------lLDE 321 (640)
. .. +....++++++. + + ..|+.++. +||||||||++|||+++.+|++. .=|.
T Consensus 77 ---------~---~~-~~~a~l~~~i~~~l--~-g~dt~i~E----glSgGq~qri~lARall~~p~i~~~~~~a~~~~~ 136 (171)
T 2f1r_A 77 ---------V---SE-EEGNDLDWIYERYL--S-DYDLVITE----GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDE 136 (171)
T ss_dssp ---------C---CH-HHHTCHHHHHHHHT--T-TCSEEEEE----SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSS
T ss_pred ---------C---Ch-hhhhCHHHHHHhhC--C-CCCEEEEC----CcCCCCCcEEEEEecccCCCccCccceEEEEecC
Confidence 0 01 112245667765 4 3 57888874 59999999999999999999873 2245
Q ss_pred CCCC---CCHHHHHHHHHHHHHHHHCC
Q 006571 322 PTSG---LDSTTALRIVQMLQDIAEAG 345 (640)
Q Consensus 322 PTsg---LD~~s~~~i~~~L~~l~~~g 345 (640)
|..+ +|......+.+.+.+...+|
T Consensus 137 ~~~~~~~f~~~~~~~~a~~i~~~~~~~ 163 (171)
T 2f1r_A 137 RVDGHKWFRRDEVERIAEFILSLLREG 163 (171)
T ss_dssp CCSSSCEECTTCHHHHHHHHHHHHTC-
T ss_pred CcccCcccCcccHHHHHHHHHHHHhcc
Confidence 4322 33444567777776655554
No 128
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.42 E-value=3.6e-14 Score=151.40 Aligned_cols=124 Identities=20% Similarity=0.227 Sum_probs=87.7
Q ss_pred cceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEEC-CEeCChhccCcEEEEccCCCCCCCCCHHHH
Q 006571 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN-DHPYSKSLKSKIGFVTQDDVLFPHLTVKET 249 (640)
Q Consensus 171 ~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~-G~~~~~~~~~~i~yV~Q~~~l~~~lTV~En 249 (640)
.-++++++. .+|++++|+||||||||||+|+|+|.... +..|+|.++ |++.....++.+++++|+..+++..||+|+
T Consensus 204 ~gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~-~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e~ 281 (358)
T 2rcn_A 204 DGLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNE-ILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVREF 281 (358)
T ss_dssp BTHHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSC-CCCC-------------CCCEEEECTTSCEEEECHHHHTC
T ss_pred cCHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccc-cccCCccccCCCCccceEEEEEEEECCCCEecCcccHHHh
Confidence 346677764 48999999999999999999999996531 457999987 765533445679999999999988899984
Q ss_pred HHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHH
Q 006571 250 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEI 310 (640)
Q Consensus 250 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL 310 (640)
+ + ..++.++..+.+.++++.+|+.+..+.. +.++| ||+||++||+++
T Consensus 282 ---~----l-~~l~~~e~~~~~~e~l~~~gl~~f~~~~-----~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 282 ---G----L-WHLEPEQITQGFVEFHDYLGHCKYRDCK-----HDADP-GCAIREAVENGA 328 (358)
T ss_dssp ---C----C-CCCCHHHHHHTSGGGGGGTTCSSSTTCC-----SSSCT-TCHHHHHHHHTS
T ss_pred ---h----h-cCCCHHHHHHHHHHHHHHcCCchhcCCC-----cccCC-HHHHHHHHHhcC
Confidence 1 1 1245556667788888889987766653 46899 999999999864
No 129
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.42 E-value=8.2e-17 Score=171.02 Aligned_cols=173 Identities=15% Similarity=0.216 Sum_probs=114.6
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (640)
|+.+|+++.| +.+.+|+++|+++++|++++|+||||||||||+|+|+|.+. +.+|+|.+.|.++..
T Consensus 30 ie~~~~~~~~--------~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~--~~~g~v~i~~~d~~~~~~~ 99 (337)
T 2qm8_A 30 AESRRADHRA--------AVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT--AAGHKVAVLAVDPSSTRTG 99 (337)
T ss_dssp HTCSSHHHHH--------HHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEEEECGGGGSSC
T ss_pred HeeCCccccc--------ChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhh--hCCCEEEEEEEcCcccccc
Confidence 5566666655 34579999999999999999999999999999999999653 458999999987632
Q ss_pred ----hccCcEEEEccCCCCCCCCC------------HHHHHHHHH-----------------------------hccCCC
Q 006571 226 ----SLKSKIGFVTQDDVLFPHLT------------VKETLTYAA-----------------------------LLRLPN 260 (640)
Q Consensus 226 ----~~~~~i~yV~Q~~~l~~~lT------------V~Enl~~~~-----------------------------~~~~~~ 260 (640)
..++++++++|++.+|+..+ ++|.+.... .+..+.
T Consensus 100 ~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~ 179 (337)
T 2qm8_A 100 GSILGDKTRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPG 179 (337)
T ss_dssp CCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSC
T ss_pred cchHHHhhhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCC
Confidence 23567999999988875321 233331110 000000
Q ss_pred CccHHHHH---HHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhh------CCCEEEEeCCCCCCCHHHH
Q 006571 261 TLTKQQKE---KRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIII------NPSLLFLDEPTSGLDSTTA 331 (640)
Q Consensus 261 ~~~~~~~~---~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~------~P~iLlLDEPTsgLD~~s~ 331 (640)
...+.. +.+.+....+.+ +..|. .....+|+|++|++..+++++. +|++++ ||++|....
T Consensus 180 --~~~~~~~i~~~i~~~~~ivvl-NK~Dl----~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi 248 (337)
T 2qm8_A 180 --AGDELQGIKKGIFELADMIAV-NKADD----GDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGL 248 (337)
T ss_dssp --C------CCTTHHHHCSEEEE-ECCST----TCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSH
T ss_pred --CcccHHHHHHHHhccccEEEE-Echhc----cCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCH
Confidence 000000 001111111111 11121 0124589999999999999987 688887 999999999
Q ss_pred HHHHHHHHHHHH
Q 006571 332 LRIVQMLQDIAE 343 (640)
Q Consensus 332 ~~i~~~L~~l~~ 343 (640)
.++++.|.++..
T Consensus 249 ~~L~~~I~~~~~ 260 (337)
T 2qm8_A 249 DSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988653
No 130
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.41 E-value=2.4e-14 Score=151.39 Aligned_cols=143 Identities=15% Similarity=0.128 Sum_probs=98.5
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--------hcc--CcEEEEccCCCCCCCCCHHHH
Q 006571 180 VNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--------SLK--SKIGFVTQDDVLFPHLTVKET 249 (640)
Q Consensus 180 i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--------~~~--~~i~yV~Q~~~l~~~lTV~En 249 (640)
.++|++++|+||||||||||++.|+|.+. +.+|+|.++|.++.. .++ ..+.+++|+..++|.+||+||
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~--~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~ 203 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLK--NHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDA 203 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH--hcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHH
Confidence 36899999999999999999999999653 458999999998742 122 346699999999999999999
Q ss_pred HHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 006571 250 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST 329 (640)
Q Consensus 250 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~ 329 (640)
+.++..... .. -+++..|+.+..+. ....|| .|++++..++.+++||.+|.
T Consensus 204 l~~~~~~~~--d~----------vliDtaG~~~~~~~-----l~~eL~-------~i~ral~~de~llvLDa~t~----- 254 (328)
T 3e70_C 204 IQHAKARGI--DV----------VLIDTAGRSETNRN-----LMDEMK-------KIARVTKPNLVIFVGDALAG----- 254 (328)
T ss_dssp HHHHHHHTC--SE----------EEEEECCSCCTTTC-----HHHHHH-------HHHHHHCCSEEEEEEEGGGT-----
T ss_pred HHHHHhccc--hh----------hHHhhccchhHHHH-----HHHHHH-------HHHHHhcCCCCEEEEecHHH-----
Confidence 987642110 00 01112232221111 112233 48899998888888885554
Q ss_pred HHHHHHHHHHHHHH-CCCEEEEEeCCC
Q 006571 330 TALRIVQMLQDIAE-AGKTVVTTIHQP 355 (640)
Q Consensus 330 s~~~i~~~L~~l~~-~g~TvI~~tH~~ 355 (640)
.++++.++.+.+ .+.|+|++||..
T Consensus 255 --~~~~~~~~~~~~~~~it~iilTKlD 279 (328)
T 3e70_C 255 --NAIVEQARQFNEAVKIDGIILTKLD 279 (328)
T ss_dssp --THHHHHHHHHHHHSCCCEEEEECGG
T ss_pred --HHHHHHHHHHHHhcCCCEEEEeCcC
Confidence 355566666653 589999999963
No 131
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.41 E-value=7.4e-15 Score=139.36 Aligned_cols=79 Identities=18% Similarity=0.124 Sum_probs=66.9
Q ss_pred ccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhcc-CcEEEEccCCCCCCCCCH
Q 006571 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK-SKIGFVTQDDVLFPHLTV 246 (640)
Q Consensus 168 ~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~-~~i~yV~Q~~~l~~~lTV 246 (640)
+++.+++++||++++|++++|+||||||||||+|+|+|.+ | .+|+|.++|.++..... ++ +++|++.+| .+||
T Consensus 18 g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l--~-~~G~V~~~g~~i~~~~~~~~--~~~q~~~l~-~ltv 91 (158)
T 1htw_A 18 GKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI--G-HQGNVKSPTYTLVEEYNIAG--KMIYHFDLY-RLAD 91 (158)
T ss_dssp HHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT--T-CCSCCCCCTTTCEEEEEETT--EEEEEEECT-TCSC
T ss_pred HHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC--C-CCCeEEECCEeeeeeccCCC--cceeccccc-cCCc
Confidence 3467999999999999999999999999999999999965 3 47999999988743221 22 899998888 8999
Q ss_pred HHHHHH
Q 006571 247 KETLTY 252 (640)
Q Consensus 247 ~Enl~~ 252 (640)
.||+.+
T Consensus 92 ~e~l~~ 97 (158)
T 1htw_A 92 PEELEF 97 (158)
T ss_dssp TTHHHH
T ss_pred HHHHHH
Confidence 999965
No 132
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.37 E-value=2.7e-14 Score=148.52 Aligned_cols=126 Identities=21% Similarity=0.277 Sum_probs=88.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHh----c
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAAL----L 256 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~----~ 256 (640)
+++.+++|.||||||||||.+.|.+.+. . .| . . ++.+.+|+||+.+++. ++++|+.++.. +
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~--~-~g------~----~-~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l~ 93 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM--E-KY------G----G-EKSIGYASIDDFYLTH-EDQLKLNEQFKNNKLL 93 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH--H-HH------G----G-GSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhh--h-cC------C----C-CceEEEeccccccCCh-HHHHHHhccccccchh
Confidence 4789999999999999999999998552 1 22 0 1 3456677999999975 99999988631 1
Q ss_pred c---CCCCccHHHHHHHHHHHHHHcCCCccccc------cccCccCCcCCHHHHHHHHHH--HHHhhCCCEEEEeCCCCC
Q 006571 257 R---LPNTLTKQQKEKRAIDVINELGLERCQDT------MIGGSFVRGVSGGERKRVCIG--NEIIINPSLLFLDEPTSG 325 (640)
Q Consensus 257 ~---~~~~~~~~~~~~~v~~~l~~lgL~~~~~t------~vg~~~~~~LSGGqrqRv~IA--~aL~~~P~iLlLDEPTsg 325 (640)
. .|... ..+.+.+.++.+.- ..+| .+ ..+...+||||+||+++| +++ +|+|||+||||++
T Consensus 94 ~~~g~p~a~----d~~~l~~~l~~l~~--g~~t~~~~~v~~-p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ 164 (290)
T 1odf_A 94 QGRGLPGTH----DMKLLQEVLNTIFN--NNEHPDQDTVVL-PKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLG 164 (290)
T ss_dssp SSSCSTTSB----CHHHHHHHHHHHTC--------CCEEEE-CCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTT
T ss_pred hhccCcchh----HHHHHHHHHHHhhc--cCccccCcceee-ccCccccCCccccccccccceEc--CCCEEEEeCcccc
Confidence 1 12222 23445666766632 2121 11 123467999999999997 555 9999999999999
Q ss_pred CCHHH
Q 006571 326 LDSTT 330 (640)
Q Consensus 326 LD~~s 330 (640)
+|+..
T Consensus 165 ld~~~ 169 (290)
T 1odf_A 165 FNPIL 169 (290)
T ss_dssp CCCCC
T ss_pred CCccc
Confidence 99864
No 133
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.35 E-value=1.4e-12 Score=142.57 Aligned_cols=75 Identities=21% Similarity=0.279 Sum_probs=68.0
Q ss_pred CcCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEE
Q 006571 294 RGVSGGERKRVCIGNEII----INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 369 (640)
Q Consensus 294 ~~LSGGqrqRv~IA~aL~----~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL 369 (640)
..||||||||++||++|+ .+|+++||||||++||+..+..+.+.|+++.+.+.++|++||++ .....||++++|
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~~~~~ 409 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV 409 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCEEEEE
Confidence 459999999999999999 58999999999999999999999999999865578999999994 356789999998
Q ss_pred c
Q 006571 370 G 370 (640)
Q Consensus 370 ~ 370 (640)
.
T Consensus 410 ~ 410 (430)
T 1w1w_A 410 Y 410 (430)
T ss_dssp E
T ss_pred E
Confidence 6
No 134
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.34 E-value=3.8e-13 Score=128.91 Aligned_cols=49 Identities=20% Similarity=0.193 Sum_probs=43.3
Q ss_pred HhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcH
Q 006571 310 IIINPSLLFLDEPTS-GLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSR 358 (640)
Q Consensus 310 L~~~P~iLlLDEPTs-gLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~ 358 (640)
.+.+|++|+||||++ ++|+..+..+.+.+.+..++|+++|++||.+..+
T Consensus 97 ~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 97 TVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQR 146 (180)
T ss_dssp HHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSCC
T ss_pred HhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChhH
Confidence 355999999999995 9999999999999998887899999999997654
No 135
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.33 E-value=7.4e-13 Score=124.19 Aligned_cols=98 Identities=14% Similarity=0.313 Sum_probs=71.8
Q ss_pred cceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHH
Q 006571 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETL 250 (640)
Q Consensus 171 ~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl 250 (640)
.+|+++ +|+.++|+||||+|||||+++|++... + .| ..+.|+...+... .
T Consensus 29 ~~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~--~-~g--------------~~~~~~~~~~~~~-~------- 78 (149)
T 2kjq_A 29 YVLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQAL--E-AG--------------KNAAYIDAASMPL-T------- 78 (149)
T ss_dssp HHCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHH--T-TT--------------CCEEEEETTTSCC-C-------
T ss_pred HHHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHH--h-cC--------------CcEEEEcHHHhhH-H-------
Confidence 467777 899999999999999999999998543 2 35 0123333322110 0
Q ss_pred HHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 006571 251 TYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTT 330 (640)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s 330 (640)
+++.+|++|++|||++ +|...
T Consensus 79 ----------------------------------------------------------~~~~~~~lLilDE~~~-~~~~~ 99 (149)
T 2kjq_A 79 ----------------------------------------------------------DAAFEAEYLAVDQVEK-LGNEE 99 (149)
T ss_dssp ----------------------------------------------------------GGGGGCSEEEEESTTC-CCSHH
T ss_pred ----------------------------------------------------------HHHhCCCEEEEeCccc-cChHH
Confidence 1246799999999998 66555
Q ss_pred HHHHHHHHHHHHHCCCE-EEEEeCCCCc
Q 006571 331 ALRIVQMLQDIAEAGKT-VVTTIHQPSS 357 (640)
Q Consensus 331 ~~~i~~~L~~l~~~g~T-vI~~tH~~~~ 357 (640)
+..+.+.+.++.++|++ +|+++|.+..
T Consensus 100 ~~~l~~li~~~~~~g~~~iiits~~~p~ 127 (149)
T 2kjq_A 100 QALLFSIFNRFRNSGKGFLLLGSEYTPQ 127 (149)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEESSCTT
T ss_pred HHHHHHHHHHHHHcCCcEEEEECCCCHH
Confidence 88999999998877888 8899997543
No 136
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.32 E-value=4.8e-14 Score=153.55 Aligned_cols=168 Identities=15% Similarity=0.167 Sum_probs=97.3
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHH
Q 006571 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTY 252 (640)
Q Consensus 173 L~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~~ 252 (640)
-++++++++.|+.++|+|+|||||||||++|+|.. + .+.+.+.. .+...+++|.+++. ..+++.|+.-+
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~--~------~i~~~~ft-Tl~p~~G~V~~~~~--~~~~l~DtpGl 215 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAH--P------KIAPYPFT-TLSPNLGVVEVSEE--ERFTLADIPGI 215 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSC--C------EECCCTTC-SSCCEEEEEECSSS--CEEEEEECCCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCC--c------cccCcccc-eecceeeEEEecCc--ceEEEEecccc
Confidence 48999999999999999999999999999999842 1 23333322 12334566665430 01111111100
Q ss_pred HHhccCCCCccHHHHH--HHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 006571 253 AALLRLPNTLTKQQKE--KRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTT 330 (640)
Q Consensus 253 ~~~~~~~~~~~~~~~~--~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s 330 (640)
.........+.....+ ++++.++..+++. ...+..||+|++||+.+|++|+.+|.||++ +.+|...
T Consensus 216 i~~a~~~~~L~~~fl~~~era~~lL~vvDls--------~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~ 283 (416)
T 1udx_A 216 IEGASEGKGLGLEFLRHIARTRVLLYVLDAA--------DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLE 283 (416)
T ss_dssp CCCGGGSCCSCHHHHHHHTSSSEEEEEEETT--------SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSC
T ss_pred ccchhhhhhhhHHHHHHHHHHHhhhEEeCCc--------cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhh
Confidence 0000000011111100 1111222223332 123467999999999999999999999999 9999987
Q ss_pred HHHHHHHHHHHH-HCCCEEEEEeCCCCcHHHhccC
Q 006571 331 ALRIVQMLQDIA-EAGKTVVTTIHQPSSRLFHKFD 364 (640)
Q Consensus 331 ~~~i~~~L~~l~-~~g~TvI~~tH~~~~~i~~~~D 364 (640)
+ ..++.+++.. +.+.+++.+|..-...+.++++
T Consensus 284 ~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~ 317 (416)
T 1udx_A 284 E-EAVKALADALAREGLAVLPVSALTGAGLPALKE 317 (416)
T ss_dssp H-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHH
T ss_pred H-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHH
Confidence 6 4555555544 4577777665433333444444
No 137
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.32 E-value=1e-15 Score=166.97 Aligned_cols=137 Identities=18% Similarity=0.214 Sum_probs=94.4
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--------hccCcEEEEc-----
Q 006571 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--------SLKSKIGFVT----- 235 (640)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--------~~~~~i~yV~----- 235 (640)
...+|+++ + .++|++++|+|||||||||||++|+|.+. +.+|+|.+.|.++.. ..++++++.+
T Consensus 155 ~~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~--~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr 230 (418)
T 1p9r_A 155 NHDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELN--SSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLR 230 (418)
T ss_dssp HHHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHC--CTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHH
T ss_pred HHHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcC--CCCCEEEEecccchhccCCcceEEEccccCcCHHHHHH
Confidence 45688888 5 38999999999999999999999999653 347999999987631 1234566655
Q ss_pred ----cCCCC--CCC----CCHHHHHHHHHhccCC-CCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHH
Q 006571 236 ----QDDVL--FPH----LTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (640)
Q Consensus 236 ----Q~~~l--~~~----lTV~Enl~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (640)
|++.+ ++. .|+.+++.++...... ..+......+ +.+.+..+|+.+.. .+..|||||+||
T Consensus 231 ~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~-~i~rL~~lgl~~~~-------~~~~LSgg~~QR- 301 (418)
T 1p9r_A 231 AILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVG-AVTRLRDMGIEPFL-------ISSSLLGVLAQR- 301 (418)
T ss_dssp HHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHH-HHHHHHHHTCCHHH-------HHHHEEEEEEEE-
T ss_pred HHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHH-HHHHHHHcCCcHHH-------HHHHHHHHHHHH-
Confidence 88765 343 5899999876421100 0000000111 22346677886542 235799999999
Q ss_pred HHHHHHhhCCCEEEE
Q 006571 305 CIGNEIIINPSLLFL 319 (640)
Q Consensus 305 ~IA~aL~~~P~iLlL 319 (640)
|||+|+.+|++..-
T Consensus 302 -LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 302 -LVRTLCPDCKEPYE 315 (418)
T ss_dssp -EEEEECTTTCEEEE
T ss_pred -hhhhhcCCCCccCC
Confidence 99999999998763
No 138
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.28 E-value=2.2e-12 Score=136.36 Aligned_cols=136 Identities=14% Similarity=0.160 Sum_probs=75.5
Q ss_pred EEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCcc
Q 006571 186 LALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLT 263 (640)
Q Consensus 186 ~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~ 263 (640)
+.|.||||+|||||+++|++.+.. +..|.|.++|.+... ..+..+++++|.+.+.-..+ + .+ ...
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~-~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~-------~~~ 105 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFG-PGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D---MG-------NND 105 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSC-TTCCC------------------CCEECSSEEEECCC----------------CC
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC-CCCCeEEecceeecccccccceeeeecccceEEecHh--h---cC-------Ccc
Confidence 899999999999999999984443 347999999987642 22456889998765421111 0 00 001
Q ss_pred HHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 006571 264 KQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 343 (640)
Q Consensus 264 ~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~ 343 (640)
. ..+.+.++.+......+.. . .+|| +..+|+++|+|||++ ||+.++..+.+.|.+..
T Consensus 106 ~----~~~~~~i~~~~~~~~~~~~-----~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~- 162 (354)
T 1sxj_E 106 R----IVIQELLKEVAQMEQVDFQ-----D-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS- 162 (354)
T ss_dssp H----HHHHHHHHHHTTTTC-----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST-
T ss_pred h----HHHHHHHHHHHHhcccccc-----c-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc-
Confidence 1 1233344433211111111 1 3566 788999999999999 99999999999998764
Q ss_pred CCCEEEEEeCCCCc
Q 006571 344 AGKTVVTTIHQPSS 357 (640)
Q Consensus 344 ~g~TvI~~tH~~~~ 357 (640)
.+.++|+++|++..
T Consensus 163 ~~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 163 KNIRLIMVCDSMSP 176 (354)
T ss_dssp TTEEEEEEESCSCS
T ss_pred CCCEEEEEeCCHHH
Confidence 37899999999764
No 139
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.27 E-value=2.4e-13 Score=142.06 Aligned_cols=121 Identities=12% Similarity=0.140 Sum_probs=81.4
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEE---CCEeCChh---cc-CcEEEEccCCCCC-----CCCCHH
Q 006571 180 VNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITY---NDHPYSKS---LK-SKIGFVTQDDVLF-----PHLTVK 247 (640)
Q Consensus 180 i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~---~G~~~~~~---~~-~~i~yV~Q~~~l~-----~~lTV~ 247 (640)
+.+|++++|+||||||||||+|+|+ ... +.+|+|.+ +|++++.. .+ +.+|||+|+|.+. +.+|+
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~--~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEE--LRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCC--CCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-Hhh--CcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 4569999999999999999999999 653 45899999 99887532 22 3689999998653 67899
Q ss_pred HHH--HHHH----hccCCCCccHHHHHHHHHHHHHHcCCCc-cccccccCccCCcCCHHHHHHHHHHHH
Q 006571 248 ETL--TYAA----LLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRVCIGNE 309 (640)
Q Consensus 248 Enl--~~~~----~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~LSGGqrqRv~IA~a 309 (640)
||+ .|+. .++........+...++.++++.++|.+ ..+. +++.|||.++|++.|||+
T Consensus 238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~-----~~~~ls~~~~R~~~~~~~ 301 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKS-----YLKIIKVYLEEIKELCRE 301 (302)
T ss_dssp GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHH-----HHHHTTCCCTTHHHHSSC
T ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHH-----HHHHHHHHHHHHHHHhcc
Confidence 888 4431 0111111112233456889999999975 4444 346899988999999873
No 140
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.26 E-value=1.4e-11 Score=133.50 Aligned_cols=62 Identities=19% Similarity=0.196 Sum_probs=46.5
Q ss_pred hCCCEEEEeCCCCCCCHHHH------------HHHHHHHHHHHHC-CCEEEEEeCCCC------------------cHHH
Q 006571 312 INPSLLFLDEPTSGLDSTTA------------LRIVQMLQDIAEA-GKTVVTTIHQPS------------------SRLF 360 (640)
Q Consensus 312 ~~P~iLlLDEPTsgLD~~s~------------~~i~~~L~~l~~~-g~TvI~~tH~~~------------------~~i~ 360 (640)
.+|+++++||||+.+|+... .++++.|++++++ |.|||+++|... ..+.
T Consensus 272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~ 351 (400)
T 3lda_A 272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMA 351 (400)
T ss_dssp SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHH
T ss_pred cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHH
Confidence 46999999999999997543 6788888888765 999999999821 2345
Q ss_pred hccCEEEEEcCCe
Q 006571 361 HKFDKLILLGKGS 373 (640)
Q Consensus 361 ~~~D~i~vL~~G~ 373 (640)
..+|.+++|++++
T Consensus 352 ~~ad~vl~L~~~~ 364 (400)
T 3lda_A 352 YSSTTRLGFKKGK 364 (400)
T ss_dssp HHCSEEEEEEECS
T ss_pred HhcceEEEEEecC
Confidence 6689999998764
No 141
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.24 E-value=4.6e-14 Score=138.99 Aligned_cols=165 Identities=19% Similarity=0.152 Sum_probs=94.2
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCC
Q 006571 180 VNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP 259 (640)
Q Consensus 180 i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~ 259 (640)
.++|++++|+||||||||||+++|+|.+. + . | ..+++|++++..++. +..+++........+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~-~-~-g--------------~~~g~v~~d~~~~~~-~~~~~~~~~~~~~~~ 80 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALS-A-Q-G--------------LPAEVVPMDGFHLDN-RLLEPRGLLPRKGAP 80 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHH-H-T-T--------------CCEEEEESGGGBCCH-HHHGGGTCGGGTTSG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHh-h-c-C--------------CceEEEecCCCcCCH-HHHHHhcccccCCCC
Confidence 57999999999999999999999999653 1 1 3 235666666655532 233332110000011
Q ss_pred CCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHH-HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 006571 260 NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG-NEIIINPSLLFLDEPTSGLDSTTALRIVQML 338 (640)
Q Consensus 260 ~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA-~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L 338 (640)
..... ..+.+.+..+...+..+..+.+. ...+|+||+||++++ ++++.++.++++|||.-
T Consensus 81 ~~~~~----~~~~~~l~~l~~~~~i~~p~~d~-~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~-------------- 141 (208)
T 3c8u_A 81 ETFDF----EGFQRLCHALKHQERVIYPLFDR-ARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW-------------- 141 (208)
T ss_dssp GGBCH----HHHHHHHHHHHHCSCEEEEEEET-TTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG--------------
T ss_pred chhhH----HHHHHHHHHHhcCCceecccCCc-cccCCCCCceEEcCCCcEEEECCceeccCCchh--------------
Confidence 11111 22233343332122223333332 235899999999998 78888888888888731
Q ss_pred HHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHHHHH
Q 006571 339 QDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFS 388 (640)
Q Consensus 339 ~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~~f~ 388 (640)
.++.+.--.+|++.+.....+.+.+.|. +..|+ +.+++.+.+.
T Consensus 142 ~~l~~~~d~~i~vd~~~~~~~~R~~~R~--~~~g~-----t~~~~~~~~~ 184 (208)
T 3c8u_A 142 RDLTAIWDVSIRLEVPMADLEARLVQRW--LDHGL-----NHDAAVARAQ 184 (208)
T ss_dssp GGGGGTCSEEEEECCCHHHHHHHHHHHH--HHTTC-----CHHHHHHHHH
T ss_pred HHHHHhcCEEEEEeCCHHHHHHHHHHHH--HhcCC-----CHHHHHHHHH
Confidence 1111222367777777554455666662 34564 6677766554
No 142
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.22 E-value=1.3e-15 Score=149.28 Aligned_cols=152 Identities=21% Similarity=0.253 Sum_probs=87.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCC-----------CCcccEEEECCEeCC----hhccCcEEEEccCCCCCCCCC
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSGRLME-----------PTVGGSITYNDHPYS----KSLKSKIGFVTQDDVLFPHLT 245 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~-----------~~~~G~I~~~G~~~~----~~~~~~i~yV~Q~~~l~~~lT 245 (640)
++|++++|+||||||||||+++|+|.... ++..|+ ++|.++. ..+++.+ .|+..++ ..+
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~-~~~ 75 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIE-HAE 75 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEE-EEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEe-eee
Confidence 58999999999999999999999985320 123455 3555432 1233332 4544444 234
Q ss_pred HHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHH----HHHHHH-HHhhCCCEEEEe
Q 006571 246 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK----RVCIGN-EIIINPSLLFLD 320 (640)
Q Consensus 246 V~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq----Rv~IA~-aL~~~P~iLlLD 320 (640)
+.+|+ |+ .+.+ .++++++. +.....+. .+ .|-++ ++ +++ +++.+|++++||
T Consensus 76 ~~~n~-~g--------~~~~----~i~~~~~~-~~~~~~~~--------~~-~g~~~~~~~~~-~~~~~~l~~p~~~ild 131 (198)
T 1lvg_A 76 FSGNL-YG--------TSKE----AVRAVQAM-NRICVLDV--------DL-QGVRSIKKTDL-CPIYIFVQPPSLDVLE 131 (198)
T ss_dssp ETTEE-EE--------EEHH----HHHHHHHT-TCEEEEEC--------CH-HHHHHHTTSSC-CCEEEEEECSCHHHHH
T ss_pred ecCcc-CC--------CCHH----HHHHHHHc-CCcEEEEC--------CH-HHHHHHHhcCC-CcEEEEEeCCCHHHHH
Confidence 54444 22 1222 23333332 10000010 00 01111 12 455 678888888999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcC
Q 006571 321 EPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (640)
Q Consensus 321 EPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~ 371 (640)
|+|+++|..+...|.+.|.+..+. +.+.|. . ..||+|+++++
T Consensus 132 e~~~~~d~~~e~~i~~~l~~~~~~----~~~a~~--~---~~~D~iivnd~ 173 (198)
T 1lvg_A 132 QRLRLRNTETEESLAKRLAAARTD----MESSKE--P---GLFDLVIINDD 173 (198)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHH----TTGGGS--T---TTCSEEEECSS
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHH----HHHhhc--c---CCceEEEECCC
Confidence 999999999999999999887653 244562 1 56899988864
No 143
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.22 E-value=1.6e-14 Score=161.32 Aligned_cols=176 Identities=16% Similarity=0.116 Sum_probs=108.3
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEe-CChhccCcEEEEccCCCCCCCCCHHH
Q 006571 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP-YSKSLKSKIGFVTQDDVLFPHLTVKE 248 (640)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~-~~~~~~~~i~yV~Q~~~l~~~lTV~E 248 (640)
..+++++++.+++|+.++|+|||||||||||++|+|.+. +..|.|+++|.+ +.......++++.|........|..+
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~--~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~ 324 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIP--PDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYD 324 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSC--TTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCC--CCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHH
Confidence 458899999999999999999999999999999999653 458999999865 32122345677776544222345555
Q ss_pred HHHHHHhccCC-----CCccHHHHHH------------------HHHHHHHHcCC-----Cc----cccccccCccCCcC
Q 006571 249 TLTYAALLRLP-----NTLTKQQKEK------------------RAIDVINELGL-----ER----CQDTMIGGSFVRGV 296 (640)
Q Consensus 249 nl~~~~~~~~~-----~~~~~~~~~~------------------~v~~~l~~lgL-----~~----~~~t~vg~~~~~~L 296 (640)
++....+.+ | ..+...+... .+.++++.+.. +. ..+..+ .....+
T Consensus 325 ~l~~~LR~~-PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi--~~~~~~ 401 (511)
T 2oap_1 325 LLRAALRQR-PDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIAL--VQTMWV 401 (511)
T ss_dssp HHHTTGGGC-CSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEE--EEEEEE
T ss_pred HHHHhhccC-CCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEE--EEEEEE
Confidence 554333221 1 0111111000 12233333322 11 011000 112358
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEE--EeCCCCcHHHhcc
Q 006571 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVT--TIHQPSSRLFHKF 363 (640)
Q Consensus 297 SGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~--~tH~~~~~i~~~~ 363 (640)
|||||||.+++. + | |+|||+.....+++.|.++.+.++|+++ ++|++. ++...|
T Consensus 402 s~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~-ei~~~~ 457 (511)
T 2oap_1 402 RGNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLE-KMADFL 457 (511)
T ss_dssp SSSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHH-HHHHHH
T ss_pred eCCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHH-HHHHHc
Confidence 999999987651 2 7 9999998877777777666556888875 888864 344444
No 144
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.11 E-value=9.9e-14 Score=149.82 Aligned_cols=169 Identities=14% Similarity=0.122 Sum_probs=117.2
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCC----------CCCcccEEEECCEeCCh-----hccCcE---EEEccCCCC
Q 006571 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLM----------EPTVGGSITYNDHPYSK-----SLKSKI---GFVTQDDVL 240 (640)
Q Consensus 179 ~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~----------~~~~~G~I~~~G~~~~~-----~~~~~i---~yV~Q~~~l 240 (640)
.+++|..++|+|+||||||||+|+|+|... ..+..|.|.++|..+.. ..++.+ .++.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 457899999999999999999999999321 12457999998854321 112223 477788888
Q ss_pred CCCCCHHHHH--HHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCC--CE
Q 006571 241 FPHLTVKETL--TYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINP--SL 316 (640)
Q Consensus 241 ~~~lTV~Enl--~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P--~i 316 (640)
++..+..|++ .|...++. ++.++..++..+ +..+..++|+. +| ++
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~------------~d~il~Vvd~~~-------d~~i~~v~~~~------------dP~~di 144 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRA------------VDAIYQVVRAFD-------DAEIIHVEGDV------------DPIRDL 144 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTT------------CSEEEEEEECCC-------TTCSSCCSSSS------------CHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHH------------HHHHHHHHhccc-------cceeeeecccc------------Ccchhh
Confidence 8877776655 33322221 001111111111 12233466653 89 99
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHH-HHCCCEEEEEeCCCCcHHHhccCEEE-EEcCC-eEEEecChH
Q 006571 317 LFLDEPTSGLDSTTALRIVQMLQDI-AEAGKTVVTTIHQPSSRLFHKFDKLI-LLGKG-SLLYFGKAS 381 (640)
Q Consensus 317 LlLDEPTsgLD~~s~~~i~~~L~~l-~~~g~TvI~~tH~~~~~i~~~~D~i~-vL~~G-~iv~~G~~~ 381 (640)
+++|||+.++|+....+.++.++++ .+.|.|++ +|... .+.++||++. +|++| ++++.|+.+
T Consensus 145 ~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~-~~~~l~~~i~~~L~~G~~~~~~~~~~ 209 (392)
T 1ni3_A 145 SIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKK-EEQAIIEKVYQYLTETKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHH-HHHHHHHHHHHHHHTTCSCGGGSCCC
T ss_pred hhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHH-HHHHHHHHHHHHhccCCceeecCCCC
Confidence 9999999999999999999999988 66677764 99854 5788999999 99999 988877653
No 145
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.08 E-value=2.9e-14 Score=147.04 Aligned_cols=142 Identities=15% Similarity=0.178 Sum_probs=98.4
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hccCcEEEEccCC-CCCCC
Q 006571 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDD-VLFPH 243 (640)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~i~yV~Q~~-~l~~~ 243 (640)
...+++++++.+++| ++|+||||||||||+++|+|... .|.|.++|.++.. ...+.+++++|+. ...|.
T Consensus 32 ~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~----~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 32 NPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESG----LNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPC 105 (274)
T ss_dssp SHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTT----CEEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSE
T ss_pred CHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcC----CCEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCC
Confidence 456899999999999 99999999999999999999542 2789999987642 2345678888874 55666
Q ss_pred CCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 006571 244 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 323 (640)
Q Consensus 244 lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPT 323 (640)
+++.|++......+ . .. .. . .+.+..+. ....|||||+||+.|++++..+|++| |||+
T Consensus 106 i~~~Deid~~~~~r---~----~~--~~----~--~~~~~~~~-----~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al 163 (274)
T 2x8a_A 106 VIFFDEVDALCPRR---S----DR--ET----G--ASVRVVNQ-----LLTEMDGLEARQQVFIMAATNRPDII--DPAI 163 (274)
T ss_dssp EEEEETCTTTCC------------------------CTTHHHH-----HHHHHHTCCSTTCEEEEEEESCGGGS--CHHH
T ss_pred eEeeehhhhhhccc---C----CC--cc----h--HHHHHHHH-----HHHhhhcccccCCEEEEeecCChhhC--CHhh
Confidence 77777776432111 0 00 00 0 01222222 23579999999999999999999975 9886
Q ss_pred C------------CCCHHHHHHHHHHH
Q 006571 324 S------------GLDSTTALRIVQML 338 (640)
Q Consensus 324 s------------gLD~~s~~~i~~~L 338 (640)
. -.|...+.+|++.+
T Consensus 164 ~r~gRfd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 164 LRPGRLDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp HSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred cCcccCCeEEEeCCcCHHHHHHHHHHH
Confidence 4 23666666666543
No 146
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.07 E-value=5.3e-13 Score=141.18 Aligned_cols=151 Identities=21% Similarity=0.222 Sum_probs=97.9
Q ss_pred cccceeceEEEEeCC-------eEEEEECCCCCcHHHHHHHHHcCCCC--CCcccEEEECCEeCCh---hc-cCcEEEEc
Q 006571 169 EKDILNGITGSVNPG-------EVLALMGPSGSGKTTLLNLLSGRLME--PTVGGSITYNDHPYSK---SL-KSKIGFVT 235 (640)
Q Consensus 169 ~~~iL~~vs~~i~~G-------e~~aIvGpsGsGKSTLl~~L~G~~~~--~~~~G~I~~~G~~~~~---~~-~~~i~yV~ 235 (640)
.+.+++++++.+++| +.++|.||||+|||||+++|+|.+.. .+.+|.+..++.++.. .. +..|.|++
T Consensus 30 ~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iD 109 (334)
T 1in4_A 30 QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFID 109 (334)
T ss_dssp CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEE
T ss_pred cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEc
Confidence 456899999999887 89999999999999999999986521 1245666666555432 12 45799999
Q ss_pred cCCCCCCCCCHHHHHHHHHhccCCCC-ccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCC
Q 006571 236 QDDVLFPHLTVKETLTYAALLRLPNT-LTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINP 314 (640)
Q Consensus 236 Q~~~l~~~lTV~Enl~~~~~~~~~~~-~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P 314 (640)
|.+.+.+ ++.|++..........- .......+.+...+..++|.. .++. +..||+|+|||+.++
T Consensus 110 E~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at~~-----~~~Ls~~l~sR~~l~------- 174 (334)
T 1in4_A 110 EIHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-ATTR-----SGLLSSPLRSRFGII------- 174 (334)
T ss_dssp TGGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEE-EESC-----GGGSCHHHHTTCSEE-------
T ss_pred chhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE-ecCC-----cccCCHHHHHhcCce-------
Confidence 9888775 78888864433211000 001112233444444444433 3332 357999999998655
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 006571 315 SLLFLDEPTSGLDSTTALRIVQMLQDIAE 343 (640)
Q Consensus 315 ~iLlLDEPTsgLD~~s~~~i~~~L~~l~~ 343 (640)
.+||+.+..++.+.|++.++
T Consensus 175 ---------~~Ld~~~~~~l~~iL~~~~~ 194 (334)
T 1in4_A 175 ---------LELDFYTVKELKEIIKRAAS 194 (334)
T ss_dssp ---------EECCCCCHHHHHHHHHHHHH
T ss_pred ---------eeCCCCCHHHHHHHHHHHHH
Confidence 78888889999999998875
No 147
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.02 E-value=1.9e-11 Score=127.94 Aligned_cols=118 Identities=16% Similarity=0.180 Sum_probs=67.9
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEE---CCEeCCh--hc-cCcEEEEccCCCCCC----CCCHH
Q 006571 178 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITY---NDHPYSK--SL-KSKIGFVTQDDVLFP----HLTVK 247 (640)
Q Consensus 178 ~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~---~G~~~~~--~~-~~~i~yV~Q~~~l~~----~lTV~ 247 (640)
+++.+|++++|+||||+|||||+|+|+|... +..|+|.+ +|+..+. .+ +..++|++|.|.+.+ .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~--~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~- 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELG--LRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE- 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC---------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccc--ccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-
Confidence 4567899999999999999999999999653 45899999 8877643 22 222799999987765 6899
Q ss_pred HHHH--HHH------hccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHH
Q 006571 248 ETLT--YAA------LLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (640)
Q Consensus 248 Enl~--~~~------~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (640)
|+|. |.. .++........+...++.++++.++|.+..... ...++.|++||
T Consensus 245 e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~-----y~~lls~~~~~ 303 (307)
T 1t9h_A 245 EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDH-----YVEFMTEIKDR 303 (307)
T ss_dssp HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHH-----HHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHH-----HHHHHHHHhhc
Confidence 8883 331 112111111122345688899999997643221 13577777763
No 148
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.02 E-value=1.8e-11 Score=122.07 Aligned_cols=60 Identities=22% Similarity=0.236 Sum_probs=45.2
Q ss_pred hCCCEEEEeCCCCCC--CHHHHHHHHHHHHHHH-HCCCEEEEEeCCCCcH-------HHhccCEEEEEcC
Q 006571 312 INPSLLFLDEPTSGL--DSTTALRIVQMLQDIA-EAGKTVVTTIHQPSSR-------LFHKFDKLILLGK 371 (640)
Q Consensus 312 ~~P~iLlLDEPTsgL--D~~s~~~i~~~L~~l~-~~g~TvI~~tH~~~~~-------i~~~~D~i~vL~~ 371 (640)
.+|+++++|+|+..+ |+....+++..|.+++ +.|.|||+++|..... +.+.||.|+.|+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 589999999999988 6655556666666665 5689999999986531 4577899999975
No 149
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.02 E-value=6.5e-11 Score=123.51 Aligned_cols=107 Identities=15% Similarity=0.192 Sum_probs=69.1
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEE---CCEeCChh---c-cCcEEEEccCCC-----------
Q 006571 178 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITY---NDHPYSKS---L-KSKIGFVTQDDV----------- 239 (640)
Q Consensus 178 ~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~---~G~~~~~~---~-~~~i~yV~Q~~~----------- 239 (640)
+++.+|++++|+||||||||||+|+|+|... +.+|+|.+ +|+++... . .+.+|||+|++.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~--~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~ 241 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLK--LRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEP 241 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCC--CC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhccccc--ccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCH
Confidence 3456799999999999999999999999653 45899999 89887531 2 246899999974
Q ss_pred -----CCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCccCCcCCH
Q 006571 240 -----LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSG 298 (640)
Q Consensus 240 -----l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LSG 298 (640)
+||.+|+ ||+.|+. +. . ..+...++.++++.+||+ +..+. +++.||+
T Consensus 242 ~~~~~l~~~~~~-~n~~~~~-~~-~----~~e~~~~v~~~l~~~~L~~~~~~~-----~~~~lse 294 (301)
T 1u0l_A 242 EELKHYFKEFGD-KQCFFSD-CN-H----VDEPECGVKEAVENGEIAESRYEN-----YVKMFYE 294 (301)
T ss_dssp HHHGGGSTTSSS-CCCSSTT-CC-S----SSCSSCHHHHHHHHTSSCHHHHHH-----HHHHHHH
T ss_pred HHHHHHHHhccc-ccCcCCC-Cc-C----CCCCCcHHHHHHHcCCCCHHHHHH-----HHHHHHH
Confidence 5889999 9998853 11 1 112345688999999995 44443 3345664
No 150
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.97 E-value=2.7e-10 Score=119.22 Aligned_cols=113 Identities=17% Similarity=0.243 Sum_probs=79.8
Q ss_pred eEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHh
Q 006571 176 ITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAAL 255 (640)
Q Consensus 176 vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~ 255 (640)
+++..++|++++|+|||||||||+++.|++.+. +.+|+|.+.+.|..+. ...|.
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~--~~g~kV~lv~~D~~r~------------------~a~eq------ 150 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV--DEGKSVVLAAADTFRA------------------AAIEQ------ 150 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEECTTCH------------------HHHHH------
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHH--hcCCEEEEEccccccH------------------HHHHH------
Confidence 455567899999999999999999999998653 3467787776654210 01111
Q ss_pred ccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHH---HHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 006571 256 LRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV---CIGNEIIINPSLLFLDEPTSGLDSTTAL 332 (640)
Q Consensus 256 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv---~IA~aL~~~P~iLlLDEPTsgLD~~s~~ 332 (640)
+..+.+.++++. ....|||+.+++ +|++++..+|+++|+|||.. .....
T Consensus 151 ---------------L~~~~~~~gl~~----------~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~ 202 (306)
T 1vma_A 151 ---------------LKIWGERVGATV----------ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKK 202 (306)
T ss_dssp ---------------HHHHHHHHTCEE----------ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHH
T ss_pred ---------------HHHHHHHcCCcE----------EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHH
Confidence 223344556542 135789999999 99999999999999999974 34445
Q ss_pred HHHHHHHHHH
Q 006571 333 RIVQMLQDIA 342 (640)
Q Consensus 333 ~i~~~L~~l~ 342 (640)
.+++.|+++.
T Consensus 203 ~l~~eL~~l~ 212 (306)
T 1vma_A 203 NLMEELRKVH 212 (306)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666654
No 151
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.97 E-value=3.2e-11 Score=126.25 Aligned_cols=98 Identities=10% Similarity=0.119 Sum_probs=79.5
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEE-------------------eCCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSV-------------------NPGEVLALMGPSGSGKTTLLNLLSGRLME 209 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i-------------------~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~ 209 (640)
.|+++||++.| .++++++++.+ ++|+++||+||||||||||+++|+|.+..
T Consensus 37 ~i~~~~v~~~y----------~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~ 106 (308)
T 1sq5_A 37 DLSLEEVAEIY----------LPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSR 106 (308)
T ss_dssp TCCHHHHHHTH----------HHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTT
T ss_pred ccchHhHHHHH----------HHHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 47888998876 25899999988 99999999999999999999999995431
Q ss_pred CCcccEEEE---CCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHhcc
Q 006571 210 PTVGGSITY---NDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLR 257 (640)
Q Consensus 210 ~~~~G~I~~---~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~ 257 (640)
.+.+|+|.+ ||.......++.++++ |+..+++.+|+.+++.+...++
T Consensus 107 ~~~~G~i~vi~~d~~~~~~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~ 156 (308)
T 1sq5_A 107 WPEHRRVELITTDGFLHPNQVLKERGLM-KKKGFPESYDMHRLVKFVSDLK 156 (308)
T ss_dssp STTCCCEEEEEGGGGBCCHHHHHHHTCT-TCTTSGGGBCHHHHHHHHHHHT
T ss_pred CCCCCeEEEEecCCccCcHHHHHhCCEe-ecCCCCCCccHHHHHHHHHHHh
Confidence 135899999 9887654445668888 8777888899999998876543
No 152
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.93 E-value=2.5e-09 Score=117.69 Aligned_cols=180 Identities=12% Similarity=0.112 Sum_probs=110.4
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCccc-EEEECCEeCCh-hccCc-EEEEccCCCCCCCCCH
Q 006571 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGG-SITYNDHPYSK-SLKSK-IGFVTQDDVLFPHLTV 246 (640)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G-~I~~~G~~~~~-~~~~~-i~yV~Q~~~l~~~lTV 246 (640)
-+.|+++.+-+++|+++.|.|+||+|||||+..|++... ...| .|.+.+.+.+. .+.++ ++... ....
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~--~~~g~~Vl~~s~E~s~~~l~~r~~~~~~-------~~~~ 260 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVA--TKTNENVAIFSLEMSAQQLVMRMLCAEG-------NINA 260 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHH--HHSSCCEEEEESSSCHHHHHHHHHHHHH-------TCCH
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH--HhCCCcEEEEECCCCHHHHHHHHHHHHc-------CCCH
Confidence 357889988899999999999999999999999987432 1123 33333322211 11100 00000 0000
Q ss_pred HHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHh--hCCCEEEEeCCCC
Q 006571 247 KETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII--INPSLLFLDEPTS 324 (640)
Q Consensus 247 ~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~--~~P~iLlLDEPTs 324 (640)
+.+ +.. .+..++ ..++.+.++.++..+..- - ...++|.+|.+ +.++.++ .+|+++++|+++.
T Consensus 261 -~~l------~~g-~l~~~~-~~~~~~a~~~l~~~~l~i---~--d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~ 324 (454)
T 2r6a_A 261 -QNL------RTG-KLTPED-WGKLTMAMGSLSNAGIYI---D--DTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQL 324 (454)
T ss_dssp -HHH------HTS-CCCHHH-HHHHHHHHHHHHSSCEEE---E--CCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGG
T ss_pred -HHH------hcC-CCCHHH-HHHHHHHHHHHhcCCEEE---E--CCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHH
Confidence 001 001 123222 234555555554332221 1 12468999987 5667776 6899999999999
Q ss_pred CCCH--------HHHHHHHHHHHHHHHC-CCEEEEEeC---------C--CC-------cHHHhccCEEEEEcCCeE
Q 006571 325 GLDS--------TTALRIVQMLQDIAEA-GKTVVTTIH---------Q--PS-------SRLFHKFDKLILLGKGSL 374 (640)
Q Consensus 325 gLD~--------~s~~~i~~~L~~l~~~-g~TvI~~tH---------~--~~-------~~i~~~~D~i~vL~~G~i 374 (640)
..++ ....++.+.|+.++++ +.+||+++| + |. ..+...||.|++|+.++.
T Consensus 325 ~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 325 IQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp SCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred hccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 7742 3446788888888854 899999999 2 32 136678999999987764
No 153
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.90 E-value=3e-09 Score=110.67 Aligned_cols=118 Identities=16% Similarity=0.088 Sum_probs=81.7
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHH
Q 006571 174 NGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYA 253 (640)
Q Consensus 174 ~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~ 253 (640)
++++++ +|++++|+|+||+||||++..|++.+. ..+|+|.+.+.+...... + +.+
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~--~~~~~v~l~~~d~~~~~~-----------------~-~ql--- 145 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK--GKGRRPLLVAADTQRPAA-----------------R-EQL--- 145 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHH--HTTCCEEEEECCSSCHHH-----------------H-HHH---
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEecCCcccHhH-----------------H-HHH---
Confidence 678888 999999999999999999999998653 346888887776532100 0 000
Q ss_pred HhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCC-CCCCCHHHHH
Q 006571 254 ALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP-TSGLDSTTAL 332 (640)
Q Consensus 254 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEP-TsgLD~~s~~ 332 (640)
..+.+..+++.... + ..-.-.+.+|.+|+++...+++++|+||| ++++|.....
T Consensus 146 ------------------~~~~~~~~l~~~~~---~----~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~ 200 (295)
T 1ls1_A 146 ------------------RLLGEKVGVPVLEV---M----DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMG 200 (295)
T ss_dssp ------------------HHHHHHHTCCEEEC---C----TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHH
T ss_pred ------------------HHhcccCCeEEEEc---C----CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHH
Confidence 01123345542211 0 11233456789999998899999999999 9999988877
Q ss_pred HHHHHHHHH
Q 006571 333 RIVQMLQDI 341 (640)
Q Consensus 333 ~i~~~L~~l 341 (640)
.+.+..+.+
T Consensus 201 ~l~~~~~~~ 209 (295)
T 1ls1_A 201 ELARLKEVL 209 (295)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhhhc
Confidence 777776654
No 154
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.88 E-value=2.3e-09 Score=114.15 Aligned_cols=154 Identities=21% Similarity=0.319 Sum_probs=90.4
Q ss_pred ceeceE--EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHH
Q 006571 172 ILNGIT--GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKET 249 (640)
Q Consensus 172 iL~~vs--~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~En 249 (640)
-|+.+- +-+++|+++.|.||||+|||||+..++..... .+| .+.|+.-+..+-+ .
T Consensus 48 ~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~--~g~---------------~vlyi~~E~~~~~---~--- 104 (349)
T 2zr9_A 48 SLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQA--AGG---------------IAAFIDAEHALDP---E--- 104 (349)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHH--TTC---------------CEEEEESSCCCCH---H---
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHh--CCC---------------eEEEEECCCCcCH---H---
Confidence 444443 37899999999999999999998888753221 112 2445544421110 0
Q ss_pred HHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhC--CCEEEEeCCCCCC-
Q 006571 250 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIIN--PSLLFLDEPTSGL- 326 (640)
Q Consensus 250 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~--P~iLlLDEPTsgL- 326 (640)
+. +.+|+.. .+-.+- ...+. .+-+.++++++.+ |+++++|||++.+
T Consensus 105 --~a----------------------~~lG~~~-~~l~i~----~~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 105 --YA----------------------KKLGVDT-DSLLVS----QPDTG--EQALEIADMLVRSGALDIIVIDSVAALVP 153 (349)
T ss_dssp --HH----------------------HHTTCCG-GGCEEE----CCSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCC
T ss_pred --HH----------------------HHcCCCH-HHeEEe----cCCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcc
Confidence 01 1122210 000010 11232 3345678888765 9999999999998
Q ss_pred ---------CH---HHHHHHHHHHHHH----HHCCCEEEEEeCCCCc---------------HHHhccCEEEEEcCCeEE
Q 006571 327 ---------DS---TTALRIVQMLQDI----AEAGKTVVTTIHQPSS---------------RLFHKFDKLILLGKGSLL 375 (640)
Q Consensus 327 ---------D~---~s~~~i~~~L~~l----~~~g~TvI~~tH~~~~---------------~i~~~~D~i~vL~~G~iv 375 (640)
|+ ..+..+.+.++++ .+.|.|||++.|.... .+...||.++.+.+++++
T Consensus 154 ~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~ 233 (349)
T 2zr9_A 154 RAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETL 233 (349)
T ss_dssp HHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEE
T ss_pred hhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeee
Confidence 33 2223445555555 3458999999996431 245678999988887765
Q ss_pred EecC
Q 006571 376 YFGK 379 (640)
Q Consensus 376 ~~G~ 379 (640)
..|+
T Consensus 234 k~g~ 237 (349)
T 2zr9_A 234 KDGT 237 (349)
T ss_dssp CSSS
T ss_pred ecCc
Confidence 5544
No 155
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.86 E-value=7.9e-11 Score=131.00 Aligned_cols=165 Identities=17% Similarity=0.193 Sum_probs=99.2
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC-CCCCCcccEEEECCEeCCh-hccCcEEEEccCCCCCCCC--CHHHHH
Q 006571 175 GITGSVNPGEVLALMGPSGSGKTTLLNLLSGR-LMEPTVGGSITYNDHPYSK-SLKSKIGFVTQDDVLFPHL--TVKETL 250 (640)
Q Consensus 175 ~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~-~~~~~~~G~I~~~G~~~~~-~~~~~i~yV~Q~~~l~~~l--TV~Enl 250 (640)
.+++++.++..++|.|++||||||+++.|... ++. ...|++.+.+.|... .+ +....+|++ +|.++.
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~-~~p~~v~l~liDpK~~el--------~~~~~lPhl~~~Vvtd~ 229 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYK-AQPEDVRFIMIDPKMLEL--------SVYEGIPHLLTEVVTDM 229 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTT-CCTTTEEEEEECCSSSGG--------GGGTTCTTBSSSCBCSH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHh-CCCceEEEEEECCchhhh--------hhhccCCcccceeecCH
Confidence 47788889999999999999999999998752 222 224667776666432 11 110111111 122222
Q ss_pred HHHHh-ccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHH----------HHHHHHhhCCC-EEE
Q 006571 251 TYAAL-LRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV----------CIGNEIIINPS-LLF 318 (640)
Q Consensus 251 ~~~~~-~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv----------~IA~aL~~~P~-iLl 318 (640)
..+.. ++ ...++.++| .+++...|+.+..+.. ......+||||+||. .+++++...|. +++
T Consensus 230 ~~a~~~L~----~~~~EmerR-~~ll~~~Gv~~i~~yn--~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlv 302 (512)
T 2ius_A 230 KDAANALR----WCVNEMERR-YKLMSALGVRNLAGYN--EKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVL 302 (512)
T ss_dssp HHHHHHHH----HHHHHHHHH-HHHHHHTTCSSHHHHH--HHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEE
T ss_pred HHHHHHHH----HHHHHHHHH-HHHHHHcCCccHHHHH--HHHHHHhhcCCcccccccccccchhccccccccCCcEEEE
Confidence 22111 10 112344444 3677888876543210 001135788988753 35566777898 789
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHC----CCEEEEEeCCCC
Q 006571 319 LDEPTSGLDSTTALRIVQMLQDIAEA----GKTVVTTIHQPS 356 (640)
Q Consensus 319 LDEPTsgLD~~s~~~i~~~L~~l~~~----g~TvI~~tH~~~ 356 (640)
+||++.-+|.. ...+.+.|.++++. |.++|++||+|+
T Consensus 303 IDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 303 VDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 99999988843 35566666666543 779999999987
No 156
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.85 E-value=1.1e-12 Score=134.79 Aligned_cols=124 Identities=15% Similarity=0.204 Sum_probs=84.7
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hccCcEEEEccCCC-CCCC
Q 006571 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDV-LFPH 243 (640)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~i~yV~Q~~~-l~~~ 243 (640)
...+++++++.+++| ++|+||||+|||||+++|++... .|.|.+++.++.. ..++.+++++|+.. ..+.
T Consensus 61 ~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 134 (278)
T 1iy2_A 61 NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 134 (278)
T ss_dssp CHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSE
T ss_pred CHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCc
Confidence 346899999999999 89999999999999999998542 6889999876532 22345778888753 5667
Q ss_pred CCHHHHHHHHHhccCCC-CccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCE
Q 006571 244 LTVKETLTYAALLRLPN-TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSL 316 (640)
Q Consensus 244 lTV~Enl~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~i 316 (640)
+++.|++......+... .....+..+.+.+++ ..|||||+||+.|++++..+|++
T Consensus 135 i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll------------------~~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 135 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp EEEEETHHHHHCC--------CHHHHHHHHHHH------------------HHHTTCCTTCCEEEEEEESCTTS
T ss_pred EEehhhhHhhhcccccccCCcchHHHHHHHHHH------------------HHHhCCCCCCCEEEEEecCCchh
Confidence 78888885432211100 000111222222222 35899999999999999999875
No 157
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.83 E-value=2.7e-09 Score=111.11 Aligned_cols=141 Identities=20% Similarity=0.196 Sum_probs=88.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCC
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN 260 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~ 260 (640)
++|++++|+||||+||||+++.|++.+. +..| +++.++.+|+. ..++.|.+...+.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~--~~~G--------------~~V~lv~~D~~---r~~a~eqL~~~~~----- 158 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISM--LEKH--------------KKIAFITTDTY---RIAAVEQLKTYAE----- 158 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHH--HTTC--------------CCEEEEECCCS---STTHHHHHHHHHT-----
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH--HhcC--------------CEEEEEecCcc---cchHHHHHHHHHH-----
Confidence 4799999999999999999999998653 1245 35777777763 3466666654321
Q ss_pred CccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006571 261 TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 340 (640)
Q Consensus 261 ~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~ 340 (640)
..|++... ..+ +..-+.+|++ +.+|+++|+| |+|+|+.....+.++.+-
T Consensus 159 ----------------~~gl~~~~----------~~~-~~~l~~al~~--~~~~dlvIiD--T~G~~~~~~~~~~el~~~ 207 (296)
T 2px0_A 159 ----------------LLQAPLEV----------CYT-KEEFQQAKEL--FSEYDHVFVD--TAGRNFKDPQYIDELKET 207 (296)
T ss_dssp ----------------TTTCCCCB----------CSS-HHHHHHHHHH--GGGSSEEEEE--CCCCCTTSHHHHHHHHHH
T ss_pred ----------------hcCCCeEe----------cCC-HHHHHHHHHH--hcCCCEEEEe--CCCCChhhHHHHHHHHHH
Confidence 12332110 112 2333555554 5999999999 999998766544443332
Q ss_pred HH---HCCCEEEE-EeCCCCcHHHhccCEEEEEcCCeEEEe
Q 006571 341 IA---EAGKTVVT-TIHQPSSRLFHKFDKLILLGKGSLLYF 377 (640)
Q Consensus 341 l~---~~g~TvI~-~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (640)
+. ..+.++++ ++|.. .++.+.+|++..+..+.++..
T Consensus 208 l~~~~~~~~~lVl~at~~~-~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 208 IPFESSIQSFLVLSATAKY-EDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp SCCCTTEEEEEEEETTBCH-HHHHHHTTTTSSSCCCEEEEE
T ss_pred HhhcCCCeEEEEEECCCCH-HHHHHHHHHHhcCCCCEEEEe
Confidence 22 12334444 47774 356677787766677777764
No 158
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.83 E-value=4.9e-10 Score=108.15 Aligned_cols=140 Identities=17% Similarity=0.142 Sum_probs=76.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCC----CC-----cccEEEECCEeCCh------hccCcEEEEccCCCC-CCCCCHHH
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRLME----PT-----VGGSITYNDHPYSK------SLKSKIGFVTQDDVL-FPHLTVKE 248 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~~~----~~-----~~G~I~~~G~~~~~------~~~~~i~yV~Q~~~l-~~~lTV~E 248 (640)
.++|+|+||||||||++.|+|.... ++ ..|+|.++|+++.- ...+..++++|.... ...++|.|
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 6899999999999999999986532 11 36899999976421 111112222221000 00011111
Q ss_pred HHHHHHhccCCCCccHHHHHHHHHHHH---HHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 006571 249 TLTYAALLRLPNTLTKQQKEKRAIDVI---NELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 325 (640)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l---~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsg 325 (640)
.. .. ...+.+..++ ......+..-..++++ .+|..-..+.+.+|++|+.+|+++++| ||+
T Consensus 111 ~~------------~~-~s~~~~~~~~~~~~~~~~~~~~i~~v~nK--~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sa 173 (191)
T 1oix_A 111 IA------------KH-LTYENVERWLKELRDHADSNIVIMLVGNK--SDLRHLRAVPTDEARAFAEKNGLSFIE--TSA 173 (191)
T ss_dssp TT------------CH-HHHHTHHHHHHHHHHHSCTTCEEEEEEEC--GGGGGGCCSCHHHHHHHHHHTTCEEEE--CCT
T ss_pred Cc------------CH-HHHHHHHHHHHHHHHhcCCCCcEEEEEEC--cccccccccCHHHHHHHHHHcCCEEEE--EeC
Confidence 10 00 0000111111 1111111111112222 123332334578899999999999999 999
Q ss_pred CCHHHHHHHHHHHHHH
Q 006571 326 LDSTTALRIVQMLQDI 341 (640)
Q Consensus 326 LD~~s~~~i~~~L~~l 341 (640)
+|..+..++++.|.+.
T Consensus 174 ld~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 174 LDSTNVEAAFQTILTE 189 (191)
T ss_dssp TTCTTHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 9999999999988753
No 159
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.82 E-value=1.2e-09 Score=120.81 Aligned_cols=52 Identities=17% Similarity=0.143 Sum_probs=46.8
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC
Q 006571 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS 224 (640)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~ 224 (640)
..+|+|+||+|++ ++++|+|||||||||||++|+|.+. +.+|+|.++|+++.
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALI--PDLTLLNFRNTTEA 68 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHC--CCTTTCCCCCTTSC
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCC--CCCCEEEECCEEcc
Confidence 3589999999999 9999999999999999999999653 46899999998764
No 160
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.82 E-value=2.1e-12 Score=130.60 Aligned_cols=124 Identities=15% Similarity=0.204 Sum_probs=83.6
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hccCcEEEEccCCC-CCCC
Q 006571 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDV-LFPH 243 (640)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~i~yV~Q~~~-l~~~ 243 (640)
...+++++++.+++| ++|+||||+|||||+++|++... .|.|.++|.++.. ..++.+++++|+.. ..+.
T Consensus 37 ~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 110 (254)
T 1ixz_A 37 NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 110 (254)
T ss_dssp CHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSE
T ss_pred CHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCe
Confidence 346899999999999 89999999999999999998542 6889999876522 22345677888743 5666
Q ss_pred CCHHHHHHHHHhccCCC-CccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCE
Q 006571 244 LTVKETLTYAALLRLPN-TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSL 316 (640)
Q Consensus 244 lTV~Enl~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~i 316 (640)
+++.|++......+... ....++..+.+.+++ ..|||||+||+.|++++..+|++
T Consensus 111 i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll------------------~~l~g~~~~~~~i~~a~t~~p~~ 166 (254)
T 1ixz_A 111 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPDI 166 (254)
T ss_dssp EEEEETHHHHHC---------CHHHHHHHHHHH------------------HHHHTCCTTCCEEEEEEESCGGG
T ss_pred EEEehhhhhhhcccCccccccchHHHHHHHHHH------------------HHHhCCCCCCCEEEEEccCCchh
Confidence 78888884332211100 001111222222222 35889999999999999999986
No 161
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.81 E-value=1.8e-10 Score=111.86 Aligned_cols=68 Identities=19% Similarity=0.365 Sum_probs=48.7
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hccCcEEEEccCCCCCCCCCHHHHH
Q 006571 177 TGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLTVKETL 250 (640)
Q Consensus 177 s~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~i~yV~Q~~~l~~~lTV~Enl 250 (640)
|+++++|++++|+||||||||||+++|+|.. + .+.+++.+... ..+..++|++|++.+|+.+++.+++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKAL--A----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAF 72 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHS--S----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhC--C----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcE
Confidence 5678899999999999999999999999953 2 36677765532 2345689999987776665555544
No 162
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.79 E-value=8.1e-11 Score=134.20 Aligned_cols=161 Identities=18% Similarity=0.164 Sum_probs=100.4
Q ss_pred ccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCC---------
Q 006571 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDD--------- 238 (640)
Q Consensus 168 ~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~--------- 238 (640)
+...+++++++.+.+|+.++|+||||+|||||+++|++.+. +...|.+.+++.+... ....++++++..
T Consensus 45 G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~-~~~~~~~~~~~~~~~~-~~p~i~~~p~g~~~~~~e~~~ 122 (604)
T 3k1j_A 45 GQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLP-TETLEDILVFPNPEDE-NMPRIKTVPACQGRRIVEKYR 122 (604)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSC-CSSCEEEEEECCTTCT-TSCEEEEEETTHHHHHHHHHH
T ss_pred CchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCC-cccCCeEEEeCCcccc-cCCcEEEEecchHHHHHHHHH
Confidence 45578999999999999999999999999999999999654 3345889998877642 345688888743
Q ss_pred -------------CCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHH
Q 006571 239 -------------VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (640)
Q Consensus 239 -------------~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (640)
..+..+++.+|+........+...-.. ...... +.+|.-+... ....++|+|++|++.
T Consensus 123 ~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~-~~~~~~---~L~G~~~~~~-----~~~g~~~~g~~~~i~ 193 (604)
T 3k1j_A 123 EKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDA-TGAHAG---ALLGDVRHDP-----FQSGGLGTPAHERVE 193 (604)
T ss_dssp HHHHHHTCC-----------CCCEEEECCTTCSSCCEEEC-TTCCHH---HHHCEECCCC-----C----CCCCGGGGEE
T ss_pred HhhccchhhhhhcccccccccccceeeccccCCCCCEEEc-CCCCHH---hcCceEEech-----hhcCCcccccccccc
Confidence 112222222222110000000000000 000011 1122111111 111469999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006571 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 340 (640)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~ 340 (640)
.++....++.+|||||... |++..+..+.+.|.+
T Consensus 194 ~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 194 PGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp CCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred CceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 9999999999999999988 899888888888764
No 163
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.63 E-value=1e-09 Score=109.93 Aligned_cols=72 Identities=18% Similarity=0.202 Sum_probs=48.5
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (640)
..|+++|++..+ +. ++++.+ ++++|+|||||||||||++|+|.+. +.+|+|.++|.++..
T Consensus 8 ~~l~l~~~~~~~--------~~-------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~--~~~G~i~~~g~~~~~~~ 69 (227)
T 1qhl_A 8 RSLTLINWNGFF--------AR-------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALI--PDLTLLHFRNTTEAGAT 69 (227)
T ss_dssp EEEEEEEETTEE--------EE-------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHS--CCTTTC-----------
T ss_pred eEEEEEeeeccc--------CC-------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccc--cCCCeEEECCEEcccCC
Confidence 468888876543 11 456666 8999999999999999999999654 458999999987621
Q ss_pred ----------hccCcEEEEccC
Q 006571 226 ----------SLKSKIGFVTQD 237 (640)
Q Consensus 226 ----------~~~~~i~yV~Q~ 237 (640)
..+..++||+|+
T Consensus 70 ~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 70 SGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp -------CGGGBCSSEEEEEEE
T ss_pred ccccccchhhHhhcCcEEEEEe
Confidence 135679999984
No 164
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.61 E-value=7.8e-10 Score=110.20 Aligned_cols=38 Identities=32% Similarity=0.305 Sum_probs=22.9
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHH-cCC
Q 006571 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLS-GRL 207 (640)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~-G~~ 207 (640)
.+..+++||++++|++++|+||||||||||+++|+ |.+
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 45789999999999999999999999999999999 964
No 165
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.57 E-value=5.7e-08 Score=107.42 Aligned_cols=59 Identities=22% Similarity=0.397 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCC----------CCCCCHHHHHHHHHHHHHHH----HCCCEEEEEeCCCC
Q 006571 298 GGERKRVCIGNEIIINPSLLFLDEP----------TSGLDSTTALRIVQMLQDIA----EAGKTVVTTIHQPS 356 (640)
Q Consensus 298 GGqrqRv~IA~aL~~~P~iLlLDEP----------TsgLD~~s~~~i~~~L~~l~----~~g~TvI~~tH~~~ 356 (640)
|++++|-.+++|....|.|||+||+ +.|.|......+.++|..+- ..+..||.+||++.
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 5788888899999999999999999 44677777677777777664 24678999999973
No 166
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.54 E-value=4.5e-08 Score=104.32 Aligned_cols=78 Identities=18% Similarity=0.195 Sum_probs=47.8
Q ss_pred cceeceE--EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEE-EECCEeCC-hhccCcEEEEccCCCCCCCCCH
Q 006571 171 DILNGIT--GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSI-TYNDHPYS-KSLKSKIGFVTQDDVLFPHLTV 246 (640)
Q Consensus 171 ~iL~~vs--~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I-~~~G~~~~-~~~~~~i~yV~Q~~~l~~~lTV 246 (640)
+-|+.+- +-+++|+++.|.||||||||||+..++.... ..+|.| ++++.... ....+++|+.+|+..+....++
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~--~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~ 124 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQ--KMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHG 124 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSH
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCH
Confidence 3455543 3689999999999999999999999997432 124544 55555432 2223445555555433333344
Q ss_pred HHHH
Q 006571 247 KETL 250 (640)
Q Consensus 247 ~Enl 250 (640)
.+.+
T Consensus 125 e~~l 128 (356)
T 3hr8_A 125 EQAL 128 (356)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 167
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.53 E-value=3.3e-08 Score=95.55 Aligned_cols=37 Identities=22% Similarity=0.188 Sum_probs=32.9
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 006571 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA 342 (640)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~ 342 (640)
...|++|+.+|+++++| ||++|.....++++.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999 99999999999999887754
No 168
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.49 E-value=4.9e-09 Score=102.14 Aligned_cols=67 Identities=22% Similarity=0.288 Sum_probs=44.7
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChh---ccCcEEEEccCCCCCCCCCHHHH
Q 006571 177 TGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS---LKSKIGFVTQDDVLFPHLTVKET 249 (640)
Q Consensus 177 s~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~---~~~~i~yV~Q~~~l~~~lTV~En 249 (640)
....++|++++|+||||||||||+++|++.+ |.+.++|.++... .+..+++++|++..++.+++.++
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~------g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 92 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET------GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAE 92 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH------CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh------CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHH
Confidence 4667899999999999999999999999843 7899998876421 12245777776544433333333
No 169
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.48 E-value=1.7e-08 Score=107.98 Aligned_cols=151 Identities=19% Similarity=0.209 Sum_probs=87.9
Q ss_pred CCeE-EEEECCCCCcHHHHHHHHHcCCCCC---------CcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHH---H
Q 006571 182 PGEV-LALMGPSGSGKTTLLNLLSGRLMEP---------TVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVK---E 248 (640)
Q Consensus 182 ~Ge~-~aIvGpsGsGKSTLl~~L~G~~~~~---------~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~---E 248 (640)
.|-. ++|+|++|||||||+|.|+|..... +..|.|.++|.++. +....|++.+.+. ..|. .
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~--l~DT~G~i~~lp~----~lve~f~~ 250 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM--LVDTVGFIRGIPP----QIVDAFFV 250 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE--EEECCCBCSSCCG----GGHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE--EEeCCCchhcCCH----HHHHHHHH
Confidence 3444 9999999999999999999864310 34688999886541 2233455544221 1121 1
Q ss_pred HHHHHHh--c--c-CC-CCcc--HHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHH----HHH-hhCCC
Q 006571 249 TLTYAAL--L--R-LP-NTLT--KQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG----NEI-IINPS 315 (640)
Q Consensus 249 nl~~~~~--~--~-~~-~~~~--~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA----~aL-~~~P~ 315 (640)
.+..... + . .. .... ..+..+.+.++++.+++.+..--.++++ +..+|+|+++|+.++ +++ ..+|+
T Consensus 251 tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK-~Dl~~~~~~~~~~~~~~l~~~l~~~~~~ 329 (364)
T 2qtf_A 251 TLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNK-IDKINGDLYKKLDLVEKLSKELYSPIFD 329 (364)
T ss_dssp HHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEEC-GGGCCSCHHHHHHHHHHHHHHHCSCEEE
T ss_pred HHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEEC-CCCCCchHHHHHHHHHHHHHHhcCCCCc
Confidence 1111000 0 0 00 0111 1223344667788877654432223332 345788899988887 554 33445
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 006571 316 LLFLDEPTSGLDSTTALRIVQMLQDIAE 343 (640)
Q Consensus 316 iLlLDEPTsgLD~~s~~~i~~~L~~l~~ 343 (640)
+ +|+|++|......+.+.|.++..
T Consensus 330 ~----~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 330 V----IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp E----EECBTTTTBSHHHHHHHHHHHHH
T ss_pred E----EEEECCCCcCHHHHHHHHHHHhc
Confidence 4 89999999999999999988654
No 170
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.45 E-value=3e-10 Score=122.06 Aligned_cols=144 Identities=19% Similarity=0.193 Sum_probs=83.8
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCC-CCCCCCHHH
Q 006571 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDV-LFPHLTVKE 248 (640)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~-l~~~lTV~E 248 (640)
..+|+++++.+++|++++|+||||||||||+++|+|. .+|.+..-+.+- ..+...+++++|... ++++.+...
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~-----~~g~~~~~~~~~-~~~~~~lg~~~q~~~~l~dd~~~~~ 229 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL-----CGGKALNVNLPL-DRLNFELGVAIDQFLVVFEDVKGTG 229 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH-----HCCEEECCSSCT-TTHHHHHGGGTTCSCEEETTCCCST
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh-----cCCcEEEEeccc-hhHHHHHHHhcchhHHHHHHHHHHH
Confidence 4689999999999999999999999999999999983 257776522111 111223667777653 233333221
Q ss_pred HHHHHHhccCCCCccHHHHHHHHHHHHHH---cCCCc----ccccc----ccCccCCcCCHHHHHHHHHHHHHhhCCCEE
Q 006571 249 TLTYAALLRLPNTLTKQQKEKRAIDVINE---LGLER----CQDTM----IGGSFVRGVSGGERKRVCIGNEIIINPSLL 317 (640)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~---lgL~~----~~~t~----vg~~~~~~LSGGqrqRv~IA~aL~~~P~iL 317 (640)
.+. .+.... ........+.+.++. +.+.. ..+.. .-+.....+++|+++|+..+.+++.+|+++
T Consensus 230 ~~~----r~l~~~-~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDLl 304 (377)
T 1svm_A 230 GES----RDLPSG-QGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLK 304 (377)
T ss_dssp TTT----TTCCCC-SHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHH
T ss_pred HHH----hhcccc-CcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCeE
Confidence 110 000000 000011223333321 00110 00000 001233568999999999988888999988
Q ss_pred E-EeCCCC
Q 006571 318 F-LDEPTS 324 (640)
Q Consensus 318 l-LDEPTs 324 (640)
+ ||+|+.
T Consensus 305 iyLd~~~~ 312 (377)
T 1svm_A 305 HCLERSEF 312 (377)
T ss_dssp HHHHTCTH
T ss_pred EEEeCCHH
Confidence 7 999987
No 171
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.40 E-value=5.4e-09 Score=101.81 Aligned_cols=56 Identities=25% Similarity=0.268 Sum_probs=45.5
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEE--EECCEeCChhc
Q 006571 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSI--TYNDHPYSKSL 227 (640)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I--~~~G~~~~~~~ 227 (640)
.....+.+++..++|++++|+||||||||||.++|++++. ..|.+ +++|.++.+.+
T Consensus 11 ~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~---~~G~~~~~~d~d~~~~~~ 68 (200)
T 3uie_A 11 SVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY---QKGKLCYILDGDNVRHGL 68 (200)
T ss_dssp CCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEEHHHHTTTT
T ss_pred ccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH---hcCceEEEecCchhhhHh
Confidence 4556778888889999999999999999999999998653 35777 88887765433
No 172
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.34 E-value=3.4e-08 Score=100.36 Aligned_cols=52 Identities=33% Similarity=0.456 Sum_probs=35.8
Q ss_pred eEEEEeE-EEEEeeccccccccccceeceEEEEeC---CeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 149 YLKFTDV-TYKVILKGMTSSEEKDILNGITGSVNP---GEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 149 ~l~~~~v-s~~~~~~~~~~~~~~~iL~~vs~~i~~---Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.|+++|| +++|. +++++|+|+|++|++ |++++|+|++||||||+.++|++.+
T Consensus 17 ~l~~~~~~~~~~~-------~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFD-------EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ----------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEec-------CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 6999999 99871 345799999999999 9999999999999999999999743
No 173
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.28 E-value=4.6e-07 Score=86.25 Aligned_cols=37 Identities=22% Similarity=0.288 Sum_probs=32.9
Q ss_pred cce--eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 006571 171 DIL--NGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLM 208 (640)
Q Consensus 171 ~iL--~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~ 208 (640)
..+ +++++.+.+| +++|+||||||||||+++|.+.+.
T Consensus 13 ~~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 13 KSYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp GGGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred EeecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHc
Confidence 355 7899999999 999999999999999999998654
No 174
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.27 E-value=4.3e-07 Score=96.13 Aligned_cols=130 Identities=12% Similarity=0.186 Sum_probs=84.8
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHH
Q 006571 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKET 249 (640)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~En 249 (640)
-+-|+.+.+-+++|+++.|.|++|+|||||+.-++.... . .| ..+.|+.= .++..+.
T Consensus 33 ~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a--~-------~g--------~~Vl~fSl------Ems~~ql 89 (338)
T 4a1f_A 33 FVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSAL--N-------DD--------RGVAVFSL------EMSAEQL 89 (338)
T ss_dssp CHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHH--H-------TT--------CEEEEEES------SSCHHHH
T ss_pred ChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH--H-------cC--------CeEEEEeC------CCCHHHH
Confidence 346777777899999999999999999999988885321 0 11 12444432 2333322
Q ss_pred HHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 006571 250 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST 329 (640)
Q Consensus 250 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~ 329 (640)
..++......+++.+..+ ..||.++++|+..|...+.++++++.|+|...+
T Consensus 90 ------------------~~Rlls~~~~v~~~~l~~--------g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si--- 140 (338)
T 4a1f_A 90 ------------------ALRALSDLTSINMHDLES--------GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRI--- 140 (338)
T ss_dssp ------------------HHHHHHHHHCCCHHHHHH--------TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCH---
T ss_pred ------------------HHHHHHHhhCCCHHHHhc--------CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcH---
Confidence 222222222222222211 259999999999999999999999999986543
Q ss_pred HHHHHHHHHHHHHH-C-CCEEEEEeC
Q 006571 330 TALRIVQMLQDIAE-A-GKTVVTTIH 353 (640)
Q Consensus 330 s~~~i~~~L~~l~~-~-g~TvI~~tH 353 (640)
.+|...++++.+ . |..+|++-|
T Consensus 141 --~~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 141 --EQIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp --HHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred --HHHHHHHHHHHHhcCCCCEEEEec
Confidence 366667777654 3 567777744
No 175
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.26 E-value=2.3e-07 Score=89.78 Aligned_cols=30 Identities=30% Similarity=0.381 Sum_probs=25.9
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 178 GSVNPGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 178 ~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
++|++|++++|+||||||||||+++|++.+
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 367899999999999999999999999965
No 176
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.23 E-value=1.8e-07 Score=98.29 Aligned_cols=78 Identities=19% Similarity=0.194 Sum_probs=57.9
Q ss_pred ceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--------hc-----cCcEEEE-ccC
Q 006571 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--------SL-----KSKIGFV-TQD 237 (640)
Q Consensus 172 iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--------~~-----~~~i~yV-~Q~ 237 (640)
++++++|.+++|++++|+|+||+||||++..|++.+. ..+|+|.+.+.|... .+ +..+.++ +|.
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~--~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~ 171 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYA--ELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANK 171 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHH--HTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSS
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCC
Confidence 3478999999999999999999999999999998654 347899998887632 12 5568999 676
Q ss_pred CCCCCCCCHHHHHH
Q 006571 238 DVLFPHLTVKETLT 251 (640)
Q Consensus 238 ~~l~~~lTV~Enl~ 251 (640)
....|..++.+++.
T Consensus 172 ~~~~p~~~~~~~l~ 185 (320)
T 1zu4_A 172 LNADPASVVFDAIK 185 (320)
T ss_dssp TTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 55444434445444
No 177
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.23 E-value=1e-06 Score=103.02 Aligned_cols=72 Identities=13% Similarity=0.204 Sum_probs=56.6
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHHCCCEEEEE-eCCCCcHHHhccCE
Q 006571 293 VRGVSGGERKRVCIGNEIIINPSLLFLDEPTS-GLDSTTALRIVQMLQDIAEAGKTVVTT-IHQPSSRLFHKFDK 365 (640)
Q Consensus 293 ~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTs-gLD~~s~~~i~~~L~~l~~~g~TvI~~-tH~~~~~i~~~~D~ 365 (640)
+.-+|.|+.+|..+++.++.+++++++|||.. +||......+++.+.......++|+++ ||++ ..+.+++++
T Consensus 188 I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~-~~l~~~~~~ 261 (773)
T 2xau_A 188 LKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDA-EKFQRYFND 261 (773)
T ss_dssp EEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCC-HHHHHHTTS
T ss_pred EEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccH-HHHHHHhcC
Confidence 44589999999999999999999999999996 999887777776666554445678875 8874 456666664
No 178
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.22 E-value=8.5e-08 Score=97.11 Aligned_cols=63 Identities=24% Similarity=0.254 Sum_probs=47.1
Q ss_pred cceeceEEEEeCCeEEEEECCCCCcHHHHHHHHH---cCCCCCCcccEEE--------ECCEeCCh-----hccCcEEEE
Q 006571 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLS---GRLMEPTVGGSIT--------YNDHPYSK-----SLKSKIGFV 234 (640)
Q Consensus 171 ~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~---G~~~~~~~~G~I~--------~~G~~~~~-----~~~~~i~yV 234 (640)
.++++.+ ++|++++|+|||||||||++++|+ |... +++|.|. .+|.++.. .+++.++++
T Consensus 18 ~~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~--~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 92 (252)
T 4e22_A 18 LERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRL--LDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVR 92 (252)
T ss_dssp -----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEE--EEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEE
T ss_pred hhhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCc--CCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEE
Confidence 3555544 789999999999999999999999 7432 4689998 88887732 456789999
Q ss_pred ccCC
Q 006571 235 TQDD 238 (640)
Q Consensus 235 ~Q~~ 238 (640)
+|.+
T Consensus 93 ~~~~ 96 (252)
T 4e22_A 93 FVSQ 96 (252)
T ss_dssp EEEE
T ss_pred EecC
Confidence 9754
No 179
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.20 E-value=5.5e-07 Score=87.42 Aligned_cols=43 Identities=28% Similarity=0.169 Sum_probs=24.5
Q ss_pred cccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 165 TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 165 ~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
++.+...+++||||++++|++++|+||+||||||+.+.|++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 7 HSSGVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -----------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3455678999999999999999999999999999999999743
No 180
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.20 E-value=5.4e-09 Score=116.22 Aligned_cols=129 Identities=16% Similarity=0.199 Sum_probs=85.3
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChh----ccCcEEEEccCCC-CCCCC
Q 006571 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS----LKSKIGFVTQDDV-LFPHL 244 (640)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~----~~~~i~yV~Q~~~-l~~~l 244 (640)
..+++++++.+++| +.|+||||+|||||+++|++... .+.|.++|.++... ..+++..++|+.. ..|.+
T Consensus 53 ~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~----~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~i 126 (499)
T 2dhr_A 53 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 126 (499)
T ss_dssp GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT----CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCE
T ss_pred hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC----CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCE
Confidence 45789999999999 89999999999999999998542 57899998776421 1234556676643 34555
Q ss_pred CHHHHHHHHHhccCC-CCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 006571 245 TVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 323 (640)
Q Consensus 245 TV~Enl~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPT 323 (640)
.+.|++......+.. .....++....+.+++. .|||||+|+..|+++...+|++ |||+.
T Consensus 127 l~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~------------------~Ldg~~~~~~viviAatn~p~~--LD~aL 186 (499)
T 2dhr_A 127 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI--LDPAL 186 (499)
T ss_dssp EEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHH------------------HGGGCCSSCCCEEEECCSCGGG--SCTTT
T ss_pred EEEehHHHHHHhhccCcCCCcHHHHHHHHHHHH------------------HhcccccCccEEEEEecCChhh--cCccc
Confidence 556666322111100 00012223333333332 4788888998899999999987 88887
Q ss_pred C
Q 006571 324 S 324 (640)
Q Consensus 324 s 324 (640)
-
T Consensus 187 l 187 (499)
T 2dhr_A 187 L 187 (499)
T ss_dssp S
T ss_pred c
Confidence 5
No 181
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.16 E-value=3.3e-07 Score=89.16 Aligned_cols=127 Identities=17% Similarity=0.242 Sum_probs=71.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccH
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTK 264 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~ 264 (640)
+++|+|||||||||+.++|++ + |...+++.++.+... + +. .
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-l------g~~~id~d~~~~~~~-------~-----~~-----------------~--- 44 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-L------GVPLVDADVVAREVV-------A-----KD-----------------S--- 44 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-T------TCCEEEHHHHHHHTT-------C-----SS-----------------C---
T ss_pred EEEEECCCCCCHHHHHHHHHH-C------CCcccchHHHHHHHc-------c-----CC-----------------h---
Confidence 689999999999999999997 2 333344322110000 0 00 0
Q ss_pred HHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC
Q 006571 265 QQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 344 (640)
Q Consensus 265 ~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~ 344 (640)
..+.++.+.+|... -.+.|+.+|..++..+..+|+.+.++ .+.++|.....+.+.++.. .
T Consensus 45 ----~~~~~i~~~~g~~~------------~~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~ 104 (206)
T 1jjv_A 45 ----PLLSKIVEHFGAQI------------LTEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--T 104 (206)
T ss_dssp ----HHHHHHHHHHCTTC------------C------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--C
T ss_pred ----HHHHHHHHHhCHHH------------hccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--C
Confidence 11334445555421 13678889999998888887654333 3345566555555444322 3
Q ss_pred CCEEEEEeCCCCcH-HHhccCEEEEEc
Q 006571 345 GKTVVTTIHQPSSR-LFHKFDKLILLG 370 (640)
Q Consensus 345 g~TvI~~tH~~~~~-i~~~~D~i~vL~ 370 (640)
+.++|+.+|.+... +...||.+++++
T Consensus 105 ~~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 105 APYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp SSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred CCEEEEEechhhhcCcHhhCCEEEEEE
Confidence 56888888876432 246788888774
No 182
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.15 E-value=7e-06 Score=87.22 Aligned_cols=159 Identities=16% Similarity=0.169 Sum_probs=82.4
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC----hhccCcEEEEccCCC-CCCCC
Q 006571 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSLKSKIGFVTQDDV-LFPHL 244 (640)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~----~~~~~~i~yV~Q~~~-l~~~l 244 (640)
..+|++++++++ .++|+|++|||||||++.|.|....|...|.++-....+. ..-....+...+.+. .+.+.
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDF 100 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCH
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCH
Confidence 458999999998 8999999999999999999995432344454433322211 001122333333221 11110
Q ss_pred -CHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCC----C----------------ccccccccCcc---CCcCCHHH
Q 006571 245 -TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL----E----------------RCQDTMIGGSF---VRGVSGGE 300 (640)
Q Consensus 245 -TV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL----~----------------~~~~t~vg~~~---~~~LSGGq 300 (640)
.+.+.+. .+.....|- . ...||. |-.. ....++.+
T Consensus 101 ~~v~~~i~--------------------~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtP-G~~~~~~~~q~~~~~ 159 (360)
T 3t34_A 101 AAVRKEIQ--------------------DETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLP-GLTKVAVDGQSDSIV 159 (360)
T ss_dssp HHHHHHHH--------------------HHHHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECC-CBCSSCCTTCCSSHH
T ss_pred HHHHHHHH--------------------HHHHHhcCCCCCcccceEEEEEeCCCCCCeEEEECC-CCCcCCcCCCchhHH
Confidence 1111111 011111110 0 011221 2110 11256788
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCC-CEEEEEeC
Q 006571 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG-KTVVTTIH 353 (640)
Q Consensus 301 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g-~TvI~~tH 353 (640)
+++..+++..+.+|++++|.-..+..|..+ ...++.++.+...| ++|++.+.
T Consensus 160 ~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 160 KDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp HHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred HHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 999999999999999777774333445443 45566666665545 47777665
No 183
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.15 E-value=2e-06 Score=91.49 Aligned_cols=62 Identities=8% Similarity=0.109 Sum_probs=49.2
Q ss_pred CcCCHHHHHHHHHHHHHhhCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEe--CCCCc
Q 006571 294 RGVSGGERKRVCIGNEIIINPSLLFLD-EPTSGLDSTTALRIVQMLQDIAEAGKTVVTTI--HQPSS 357 (640)
Q Consensus 294 ~~LSGGqrqRv~IA~aL~~~P~iLlLD-EPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~t--H~~~~ 357 (640)
..+|+||+|++. +.+...++-++++| +|+.++|......+++.+.+... ++.+|++. ||...
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~ 294 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVAD 294 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCC
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCC
Confidence 468999998876 55555677789999 99999999998888888776543 77888888 77543
No 184
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.09 E-value=2.1e-06 Score=94.11 Aligned_cols=96 Identities=10% Similarity=0.158 Sum_probs=61.2
Q ss_pred hCCCEEEEeCCCCCCCH-HHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEE-EcCCeEEEecChH--HHHHHH
Q 006571 312 INPSLLFLDEPTSGLDS-TTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLIL-LGKGSLLYFGKAS--EAMAYF 387 (640)
Q Consensus 312 ~~P~iLlLDEPTsgLD~-~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~v-L~~G~iv~~G~~~--~~~~~f 387 (640)
.+|++||+||+..-.+. .++..+...+..+.+.|+.||+++|++..++..+.+++.- +..|.++..++++ +..+.+
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL 272 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIA 272 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHH
Confidence 38999999999887764 6778899999988878899999999865432223333332 4567777776653 333332
Q ss_pred ----HhcCCCCCCCCChHHHHHHhhc
Q 006571 388 ----SSIGCSPQIAMNPAEFLLDLAN 409 (640)
Q Consensus 388 ----~~~g~~~~~~~npad~~~~~~~ 409 (640)
...|...++ +..+++.....
T Consensus 273 ~~~~~~~~~~i~~--e~l~~la~~~~ 296 (440)
T 2z4s_A 273 RKMLEIEHGELPE--EVLNFVAENVD 296 (440)
T ss_dssp HHHHHHHTCCCCT--THHHHHHHHCC
T ss_pred HHHHHHcCCCCCH--HHHHHHHHhcC
Confidence 334544332 33555555443
No 185
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.05 E-value=9.4e-07 Score=84.51 Aligned_cols=38 Identities=21% Similarity=0.284 Sum_probs=29.3
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEEC
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN 219 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~ 219 (640)
.+|++++|+||||||||||+++|++... +...|.|...
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~-~~~~~~i~~t 40 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHP-DRFAYPIPHT 40 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCT-TTEECCCCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC-ccEEEeeecc
Confidence 3689999999999999999999998542 2234555443
No 186
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=98.01 E-value=3.1e-05 Score=81.87 Aligned_cols=145 Identities=17% Similarity=0.185 Sum_probs=79.8
Q ss_pred eeceE-EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHH
Q 006571 173 LNGIT-GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLT 251 (640)
Q Consensus 173 L~~vs-~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~ 251 (640)
|+.+- +-+++|+++.|.||+|+|||||+..++.....+...| | ....+.|+.-+..+ ....-..
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~g-----g------~~~~vlyi~~E~~~----~~~~l~~ 175 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGG-----Y------PGGKIIFIDTENTF----RPDRLRD 175 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTT-----B------CCCEEEEEESSSCC----CHHHHHH
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccC-----C------CCCeEEEEECCCCC----CHHHHHH
Confidence 44433 5689999999999999999999999986422121101 0 01235566544321 2222222
Q ss_pred HHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHH-HHHHHHHHHHHh----hCCCEEEEeCCCCCC
Q 006571 252 YAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG-ERKRVCIGNEII----INPSLLFLDEPTSGL 326 (640)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG-qrqRv~IA~aL~----~~P~iLlLDEPTsgL 326 (640)
+..... ... +++++.+-+. +..++. +.+.+..++.++ .+++++++|+.++-.
T Consensus 176 ~~~~~g----~~~-------~~~l~~l~~~------------~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~ 232 (343)
T 1v5w_A 176 IADRFN----VDH-------DAVLDNVLYA------------RAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALF 232 (343)
T ss_dssp HHHHTT----CCH-------HHHHHTEEEE------------ECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGH
T ss_pred HHHHcC----CCH-------HHHHhceeEe------------ecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHH
Confidence 221111 111 1223322111 112232 234555666666 568999999999866
Q ss_pred CHH------------HHHHHHHHHHHHHH-CCCEEEEEeCCC
Q 006571 327 DST------------TALRIVQMLQDIAE-AGKTVVTTIHQP 355 (640)
Q Consensus 327 D~~------------s~~~i~~~L~~l~~-~g~TvI~~tH~~ 355 (640)
+.. ...+++..|+++++ .+.+||++.|-.
T Consensus 233 ~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~ 274 (343)
T 1v5w_A 233 RVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMT 274 (343)
T ss_dssp HHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC-
T ss_pred HHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeece
Confidence 432 12455666666665 488999888853
No 187
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.01 E-value=1.2e-06 Score=84.14 Aligned_cols=25 Identities=40% Similarity=0.672 Sum_probs=23.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 183 GEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 183 Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
|++++|+||||||||||+++|+|.+
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 6789999999999999999999965
No 188
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.01 E-value=1.4e-05 Score=84.53 Aligned_cols=43 Identities=14% Similarity=0.061 Sum_probs=35.1
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCC
Q 006571 312 INPSLLFLDEPTSGLDSTTALRIVQMLQDIAE---AGKTVVTTIHQP 355 (640)
Q Consensus 312 ~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~---~g~TvI~~tH~~ 355 (640)
.+|.+|++||+... |......+.+.+.++.. .+.++|+++|++
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence 45889999999876 88888888888876655 577899999986
No 189
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.01 E-value=2.1e-06 Score=98.86 Aligned_cols=131 Identities=18% Similarity=0.107 Sum_probs=77.6
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hccCcEEEEccCCCCCCCCCHHHHHHH
Q 006571 177 TGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLTVKETLTY 252 (640)
Q Consensus 177 s~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~i~yV~Q~~~l~~~lTV~Enl~~ 252 (640)
|+.+++|+.++|+|++|+|||||++.|++........|+| .+|..+.+ +.++.+++.+|...++.. ++..
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~~~---- 76 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-GHRV---- 76 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-TEEE----
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-CEEE----
Confidence 4567899999999999999999999999643221246777 56655432 234556666665544321 1111
Q ss_pred HHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 006571 253 AALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTAL 332 (640)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~ 332 (640)
...||. |. ..++ .......-..++.++++| |+.|+|+.+.
T Consensus 77 -----------------------------nliDTp-G~---~~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt~- 116 (665)
T 2dy1_A 77 -----------------------------FLLDAP-GY---GDFV-----GEIRGALEAADAALVAVS-AEAGVQVGTE- 116 (665)
T ss_dssp -----------------------------EEEECC-CS---GGGH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHHH-
T ss_pred -----------------------------EEEeCC-Cc---cchH-----HHHHHHHhhcCcEEEEEc-CCcccchhHH-
Confidence 112221 11 0111 112222235678889999 9999998876
Q ss_pred HHHHHHHHHHHCCCEEEEEeCCCC
Q 006571 333 RIVQMLQDIAEAGKTVVTTIHQPS 356 (640)
Q Consensus 333 ~i~~~L~~l~~~g~TvI~~tH~~~ 356 (640)
.++ +.+.+.+.++|++.|...
T Consensus 117 ~~~---~~~~~~~ip~ilv~NKiD 137 (665)
T 2dy1_A 117 RAW---TVAERLGLPRMVVVTKLD 137 (665)
T ss_dssp HHH---HHHHHTTCCEEEEEECGG
T ss_pred HHH---HHHHHccCCEEEEecCCc
Confidence 333 333345888889988854
No 190
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.94 E-value=3.3e-05 Score=80.92 Aligned_cols=145 Identities=23% Similarity=0.304 Sum_probs=80.4
Q ss_pred ceeceE-EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHH
Q 006571 172 ILNGIT-GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETL 250 (640)
Q Consensus 172 iL~~vs-~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl 250 (640)
.|+.+- +-+++|+++.|.||+|+|||||+..++.....+...| | ....+.|+.-+..+ ...+-.
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~g-----g------~~~~vlyi~~e~~~----~~~~l~ 159 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKG-----G------LSGKAVYIDTEGTF----RWERIE 159 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGT-----C------CSCEEEEEESSSCC----CHHHHH
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccC-----C------CCCeEEEEECCCCC----CHHHHH
Confidence 344443 5799999999999999999999999886432221111 0 01235555544321 122111
Q ss_pred HHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHH-HHHHHHHHHHHh---hCCCEEEEeCCCCCC
Q 006571 251 TYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG-ERKRVCIGNEII---INPSLLFLDEPTSGL 326 (640)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG-qrqRv~IA~aL~---~~P~iLlLDEPTsgL 326 (640)
.....+. ... +++++.+-+ .+..+.. +.+.+..++.++ .+|+++++|+.++-.
T Consensus 160 ~~~~~~g----~~~-------~~~~~~l~~------------~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~ 216 (324)
T 2z43_A 160 NMAKALG----LDI-------DNVMNNIYY------------IRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHF 216 (324)
T ss_dssp HHHHHTT----CCH-------HHHHHTEEE------------EECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHH
T ss_pred HHHHHhC----CCH-------HHHhccEEE------------EeCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHh
Confidence 1111111 111 112221111 0122333 335677778887 579999999999865
Q ss_pred CH--------HH----HHHHHHHHHHHHHC-CCEEEEEeCC
Q 006571 327 DS--------TT----ALRIVQMLQDIAEA-GKTVVTTIHQ 354 (640)
Q Consensus 327 D~--------~s----~~~i~~~L~~l~~~-g~TvI~~tH~ 354 (640)
+. .. ..+++..|++++++ +.+||++.|-
T Consensus 217 ~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~ 257 (324)
T 2z43_A 217 RAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQV 257 (324)
T ss_dssp HHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred hhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcce
Confidence 32 11 24555666666643 8899988775
No 191
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.91 E-value=3e-06 Score=84.25 Aligned_cols=41 Identities=27% Similarity=0.259 Sum_probs=35.2
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeC
Q 006571 177 TGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY 223 (640)
Q Consensus 177 s~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~ 223 (640)
++..++|++++|.|+||||||||+++|+|. +|+|.+++.|.
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~------~g~v~~~~~~~ 54 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY------KNDICLLTEPV 54 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG------TTTEEEECCTH
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc------cCCeEEEecCH
Confidence 344579999999999999999999999984 57898888775
No 192
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.87 E-value=1.3e-05 Score=83.76 Aligned_cols=133 Identities=11% Similarity=0.113 Sum_probs=84.5
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHH
Q 006571 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKET 249 (640)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~En 249 (640)
-+-|+++.+-+++|+++.|.|++|+|||||+.-++.... ..| ..+.|+.=+ ++..+.
T Consensus 55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a---~~g--------------~~vl~~slE------~s~~~l 111 (315)
T 3bh0_A 55 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMS---DND--------------DVVNLHSLE------MGKKEN 111 (315)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHH---TTT--------------CEEEEEESS------SCHHHH
T ss_pred hHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH---HcC--------------CeEEEEECC------CCHHHH
Confidence 346788877799999999999999999999988874221 111 124555432 343332
Q ss_pred HHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 006571 250 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST 329 (640)
Q Consensus 250 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~ 329 (640)
.. ++......+.+.+..+ | . ..||.++++|+..|...+.++++++.|+|...
T Consensus 112 ~~------------------R~~~~~~~i~~~~l~~---~--~-~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~---- 163 (315)
T 3bh0_A 112 IK------------------RLIVTAGSINAQKIKA---A--R-RDFASEDWGKLSMAIGEISNSNINIFDKAGQS---- 163 (315)
T ss_dssp HH------------------HHHHHHTTCCHHHHHS---C--H-HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB----
T ss_pred HH------------------HHHHHHcCCCHHHHhc---C--C-CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC----
Confidence 21 1111111122111111 0 0 13899999999999999999999999998643
Q ss_pred HHHHHHHHHHHHHHC-CCE--EEEEeCC
Q 006571 330 TALRIVQMLQDIAEA-GKT--VVTTIHQ 354 (640)
Q Consensus 330 s~~~i~~~L~~l~~~-g~T--vI~~tH~ 354 (640)
..++...++++.++ |.. +|++-|-
T Consensus 164 -~~~i~~~i~~l~~~~~~~~~lVVID~l 190 (315)
T 3bh0_A 164 -VNYIWSKTRQTKRKNPGKRVIVMIDYL 190 (315)
T ss_dssp -HHHHHHHHHHHHHTSSSCCEEEEEECG
T ss_pred -HHHHHHHHHHHHHhcCCCCeEEEEeCc
Confidence 34566667776654 666 7777653
No 193
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.83 E-value=7.1e-05 Score=76.63 Aligned_cols=73 Identities=18% Similarity=0.324 Sum_probs=44.9
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH----------HHHHHHHHHHHHHH----CCCEEEEEeCCC---CcHH
Q 006571 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDST----------TALRIVQMLQDIAE----AGKTVVTTIHQP---SSRL 359 (640)
Q Consensus 297 SGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~----------s~~~i~~~L~~l~~----~g~TvI~~tH~~---~~~i 359 (640)
+++++.|..++.+...+|.+|++||+.+-++.. ....++..+..... .+..||.+++++ ...+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 356777778888888899999999998776532 22234444433211 234677788874 3334
Q ss_pred HhccCEEEEE
Q 006571 360 FHKFDKLILL 369 (640)
Q Consensus 360 ~~~~D~i~vL 369 (640)
.+.||+++.+
T Consensus 177 ~~R~~~~i~~ 186 (297)
T 3b9p_A 177 LRRFTKRVYV 186 (297)
T ss_dssp HHHCCEEEEC
T ss_pred HhhCCeEEEe
Confidence 4456665444
No 194
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.83 E-value=1.2e-05 Score=83.60 Aligned_cols=63 Identities=13% Similarity=0.093 Sum_probs=42.9
Q ss_pred CCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCCHHH-HHHHHHHHHHHHHC-CC--EEEEEeCCCCcHHHhccCEE
Q 006571 296 VSGGERKRVCIGNEII--INPSLLFLDEPTSGLDSTT-ALRIVQMLQDIAEA-GK--TVVTTIHQPSSRLFHKFDKL 366 (640)
Q Consensus 296 LSGGqrqRv~IA~aL~--~~P~iLlLDEPTsgLD~~s-~~~i~~~L~~l~~~-g~--TvI~~tH~~~~~i~~~~D~i 366 (640)
+|+|++ .+++.+. ..|.++++ +.+|... ...+.+.++++++. |. .+.+++|+-. .+..++|.+
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~-~v~~l~~~i 169 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGL-NVDTIAAIV 169 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTT-THHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCC-CHHHHHHHH
Confidence 898886 5566666 68999998 7888876 66777888888753 43 5566666633 344444443
No 195
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.82 E-value=6e-06 Score=80.77 Aligned_cols=27 Identities=33% Similarity=0.481 Sum_probs=25.3
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
++|++++|+||||||||||++.|++.+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 589999999999999999999999865
No 196
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.75 E-value=1.5e-05 Score=77.41 Aligned_cols=46 Identities=28% Similarity=0.373 Sum_probs=36.7
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCC
Q 006571 177 TGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPH 243 (640)
Q Consensus 177 s~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~ 243 (640)
--++++|++++|+|+||||||||.+.|++.+. .+.+++||+.+++.
T Consensus 15 ~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~---------------------~~~~i~~D~~~~~~ 60 (207)
T 2qt1_A 15 VPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP---------------------NCSVISQDDFFKPE 60 (207)
T ss_dssp CCCSCCCEEEEEEESTTSSHHHHHHHHHTTST---------------------TEEEEEGGGGBCCG
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHHHhcC---------------------CcEEEeCCccccCH
Confidence 34567899999999999999999999997431 26778888776653
No 197
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.74 E-value=8.1e-06 Score=76.95 Aligned_cols=37 Identities=24% Similarity=0.362 Sum_probs=31.3
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeC
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY 223 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~ 223 (640)
.+|++++|+|||||||||++++|++.+ |.+.+++.++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~------g~~~i~~d~~ 42 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL------HAAFLDGDFL 42 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH------TCEEEEGGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh------CcEEEeCccc
Confidence 468999999999999999999999742 6778877654
No 198
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.68 E-value=6.9e-05 Score=81.70 Aligned_cols=125 Identities=14% Similarity=0.138 Sum_probs=68.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCC
Q 006571 182 PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNT 261 (640)
Q Consensus 182 ~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~ 261 (640)
++.+++++||+|+||||++..|++.+. ..+++|.+-+.|. + .....|.+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~--~~G~kVllv~~D~-----------------~-r~~a~eqL~~--------- 146 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYK--KRGYKVGLVAADV-----------------Y-RPAAYDQLLQ--------- 146 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHH--HTTCCEEEEEECC-----------------S-CHHHHHHHHH---------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEecCc-----------------c-chhHHHHHHH---------
Confidence 678999999999999999999997553 2345555443331 1 0011222221
Q ss_pred ccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCC-CC--CCHHHHHHHHHHH
Q 006571 262 LTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT-SG--LDSTTALRIVQML 338 (640)
Q Consensus 262 ~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPT-sg--LD~~s~~~i~~~L 338 (640)
.-+..|++-.... .+..--.--+-+++.+...+++++|+|+|- .+ .|+....++.+.+
T Consensus 147 ------------~~~~~gv~~~~~~-------~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~ 207 (433)
T 3kl4_A 147 ------------LGNQIGVQVYGEP-------NNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMY 207 (433)
T ss_dssp ------------HHHTTTCCEECCT-------TCSCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHH
T ss_pred ------------HHHhcCCceeecc-------ccCCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHH
Confidence 1222333211100 011111122234555555689999999997 34 7877766666655
Q ss_pred HHHHHCCCEEEEEeCC
Q 006571 339 QDIAEAGKTVVTTIHQ 354 (640)
Q Consensus 339 ~~l~~~g~TvI~~tH~ 354 (640)
+.+......+++.+|.
T Consensus 208 ~~~~pd~vlLVlDa~~ 223 (433)
T 3kl4_A 208 DVLKPDDVILVIDASI 223 (433)
T ss_dssp HHHCCSEEEEEEEGGG
T ss_pred HhhCCcceEEEEeCcc
Confidence 5443334444555554
No 199
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.67 E-value=1.5e-05 Score=77.83 Aligned_cols=29 Identities=28% Similarity=0.431 Sum_probs=25.4
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 179 ~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
...+|++++|+||||||||||++.|.+..
T Consensus 15 ~~~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 15 YFQGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp -CCSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 33589999999999999999999999854
No 200
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.62 E-value=4e-06 Score=88.07 Aligned_cols=59 Identities=19% Similarity=0.244 Sum_probs=44.0
Q ss_pred cccceeceEEEEeCCe------EEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCC
Q 006571 169 EKDILNGITGSVNPGE------VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFP 242 (640)
Q Consensus 169 ~~~iL~~vs~~i~~Ge------~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~ 242 (640)
.+..|++++..+..++ ++||+||||||||||+++|.+.+...+.+| .++++.+|+...+
T Consensus 72 ~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~---------------~v~~i~~D~f~~~ 136 (321)
T 3tqc_A 72 ARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHP---------------NVEVITTDGFLYS 136 (321)
T ss_dssp HHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCC---------------CEEEEEGGGGBCC
T ss_pred chHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCC---------------eEEEEeecccccc
Confidence 4567888888888777 999999999999999999998653211222 3667777766554
No 201
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.62 E-value=1e-05 Score=78.67 Aligned_cols=41 Identities=39% Similarity=0.297 Sum_probs=33.1
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEe
Q 006571 180 VNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP 222 (640)
Q Consensus 180 i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~ 222 (640)
.++|++++|+|+||||||||++.|++.+. +.+|.|.+.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~--~~~~~v~~~~~d 59 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLR--EQGISVCVFHMD 59 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHH--HTTCCEEEEEGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHh--hcCCeEEEeccC
Confidence 57899999999999999999999998552 236777665544
No 202
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.55 E-value=4.2e-06 Score=82.19 Aligned_cols=56 Identities=25% Similarity=0.303 Sum_probs=41.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCC-CCcccEEEE--------CCEeCCh-----hccCcEEEEccCC
Q 006571 183 GEVLALMGPSGSGKTTLLNLLSGRLME-PTVGGSITY--------NDHPYSK-----SLKSKIGFVTQDD 238 (640)
Q Consensus 183 Ge~~aIvGpsGsGKSTLl~~L~G~~~~-~~~~G~I~~--------~G~~~~~-----~~~~~i~yV~Q~~ 238 (640)
+.+++|+|||||||||+.++|++.+.- ..+.|++.. +|.++.. .+++.+++++|++
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 74 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVST 74 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeecc
Confidence 568999999999999999999975311 135687776 6766542 3567788888864
No 203
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.55 E-value=7.9e-06 Score=91.91 Aligned_cols=43 Identities=35% Similarity=0.539 Sum_probs=35.4
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCccc-EEE-ECCEeC
Q 006571 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGG-SIT-YNDHPY 223 (640)
Q Consensus 179 ~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G-~I~-~~G~~~ 223 (640)
.+++|++++|+|+||||||||+++|+|++. +.+| +|. ++|.++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~--~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLM--EMGGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHH--TTCSSCEEEESSHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhc--ccCCceEEEECCcHH
Confidence 578999999999999999999999999764 2344 674 888654
No 204
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.53 E-value=0.00022 Score=78.01 Aligned_cols=171 Identities=15% Similarity=0.216 Sum_probs=95.6
Q ss_pred cceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHH
Q 006571 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETL 250 (640)
Q Consensus 171 ~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl 250 (640)
+-|+.+.+-+++|+++.|.|++|+|||||..-++.... ...| ..+.|+.=+ ++..+..
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a--~~~g--------------~~vl~~slE------~~~~~l~ 245 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAA--LKEG--------------VGVGIYSLE------MPAAQLT 245 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHH--HTTC--------------CCEEEEESS------SCHHHHH
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH--HhCC--------------CeEEEEECC------CCHHHHH
Confidence 46777777799999999999999999999988885321 0011 123333321 2222211
Q ss_pred HH--HHhccCC------CCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHh--hCCCEEEEe
Q 006571 251 TY--AALLRLP------NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII--INPSLLFLD 320 (640)
Q Consensus 251 ~~--~~~~~~~------~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~--~~P~iLlLD 320 (640)
.- ......+ ..++.++ ..++.+.++.+.-.+.. +-+ ..++|..+- .+.++.+. .+|+++++|
T Consensus 246 ~R~~~~~~~i~~~~l~~g~l~~~~-~~~~~~a~~~l~~~~l~---i~d--~~~~s~~~l--~~~~~~l~~~~~~~lIvID 317 (444)
T 2q6t_A 246 LRMMCSEARIDMNRVRLGQLTDRD-FSRLVDVASRLSEAPIY---IDD--TPDLTLMEV--RARARRLVSQNQVGLIIID 317 (444)
T ss_dssp HHHHHHHTTCCTTTCCGGGCCHHH-HHHHHHHHHHHHTSCEE---EEC--CTTCBHHHH--HHHHHHHHHHSCCCEEEEE
T ss_pred HHHHHHHcCCCHHHHhCCCCCHHH-HHHHHHHHHHHhcCCEE---EEC--CCCCCHHHH--HHHHHHHHHHcCCCEEEEc
Confidence 10 0000000 0122322 22333344333211111 111 134676664 34556665 479999999
Q ss_pred CCCCCCCH----------HHHHHHHHHHHHHHHC-CCEEEEEeCC-----------CC-------cHHHhccCEEEEEcC
Q 006571 321 EPTSGLDS----------TTALRIVQMLQDIAEA-GKTVVTTIHQ-----------PS-------SRLFHKFDKLILLGK 371 (640)
Q Consensus 321 EPTsgLD~----------~s~~~i~~~L~~l~~~-g~TvI~~tH~-----------~~-------~~i~~~~D~i~vL~~ 371 (640)
..+.-.+. .....+.+.|+.++++ +.+||+++|- |. ..+.+.||.|++|+.
T Consensus 318 ~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~r 397 (444)
T 2q6t_A 318 YLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIYR 397 (444)
T ss_dssp CGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEEE
T ss_pred ChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEec
Confidence 98764432 1224677888888764 8899999883 11 024567899988864
No 205
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.48 E-value=1.1e-05 Score=76.48 Aligned_cols=41 Identities=32% Similarity=0.344 Sum_probs=31.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCccc--EEEECCEeCC
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGG--SITYNDHPYS 224 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G--~I~~~G~~~~ 224 (640)
++|++++|+|++||||||+.+.|++.+. + .| .|.+++..+.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~--~-~g~~~i~~d~~~~~ 45 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLV--C-HGIPCYTLDGDNIR 45 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH--H-TTCCEEEEEHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh--h-CCCcEEEECChHHH
Confidence 4799999999999999999999998542 1 35 5666765543
No 206
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.48 E-value=0.00013 Score=75.32 Aligned_cols=30 Identities=27% Similarity=0.484 Sum_probs=26.4
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 178 GSVNPGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 178 ~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
+.+.++..+.|.||+|+|||||.++|++..
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 346788999999999999999999999743
No 207
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.47 E-value=2.5e-05 Score=77.74 Aligned_cols=153 Identities=14% Similarity=0.118 Sum_probs=77.2
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCC
Q 006571 180 VNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP 259 (640)
Q Consensus 180 i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~ 259 (640)
+..|+.++|.||+||||||++.++..... ...| ....++.+.+.|......++.+++.........
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~~~~--~~~~------------~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~ 138 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFILDDF--IQND------------RAAECNIVVTQPRRISAVSVAERVAFERGEEPG 138 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHH--HHTT------------CGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTT
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHhcch--hhcC------------CCCceEEEEeccchHHHHHHHHHHHHHhccccC
Confidence 35789999999999999999887763110 0011 012355666665443334455555422110000
Q ss_pred CCccHHHHHHHHHHHHHHcCCCccccccc--cCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHH
Q 006571 260 NTLTKQQKEKRAIDVINELGLERCQDTMI--GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS-GLDSTTALRIVQ 336 (640)
Q Consensus 260 ~~~~~~~~~~~v~~~l~~lgL~~~~~t~v--g~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTs-gLD~~s~~~i~~ 336 (640)
. ..|.....+... .+..+--.+.|.-.+.. ...+.+-+++++||.-. ++|.......++
T Consensus 139 ~----------------~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~ 200 (235)
T 3llm_A 139 K----------------SCGYSVRFESILPRPHASIMFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLR 200 (235)
T ss_dssp S----------------SEEEEETTEEECCCSSSEEEEEEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHH
T ss_pred c----------------eEEEeechhhccCCCCCeEEEECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHH
Confidence 0 000000000000 00001113456655553 33578999999999976 677776544554
Q ss_pred HHHHHHHCCCEEEEEeCCCCcHHHhccC
Q 006571 337 MLQDIAEAGKTVVTTIHQPSSRLFHKFD 364 (640)
Q Consensus 337 ~L~~l~~~g~TvI~~tH~~~~~i~~~~D 364 (640)
.+......-++++++.--+...+.++++
T Consensus 201 ~i~~~~~~~~~il~SAT~~~~~~~~~~~ 228 (235)
T 3llm_A 201 DVVQAYPEVRIVLMSATIDTSMFCEYFF 228 (235)
T ss_dssp HHHHHCTTSEEEEEECSSCCHHHHHHTT
T ss_pred HHHhhCCCCeEEEEecCCCHHHHHHHcC
Confidence 4444333334666665544443444443
No 208
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.46 E-value=3.5e-05 Score=81.01 Aligned_cols=27 Identities=22% Similarity=0.501 Sum_probs=24.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++..+.|.||+|+|||||++.+++.+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 567899999999999999999999743
No 209
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.46 E-value=6.4e-05 Score=69.84 Aligned_cols=31 Identities=26% Similarity=0.472 Sum_probs=25.5
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 006571 174 NGITGSVNPGEVLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 174 ~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G 205 (640)
++.++++.+| +++|+|||||||||++++|.-
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 3455666665 999999999999999999973
No 210
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.44 E-value=4.4e-05 Score=71.51 Aligned_cols=26 Identities=35% Similarity=0.561 Sum_probs=23.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 182 PGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 182 ~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.|++++|+||||||||||+++|++.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 46889999999999999999999854
No 211
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.43 E-value=1.3e-05 Score=85.74 Aligned_cols=51 Identities=18% Similarity=0.300 Sum_probs=44.8
Q ss_pred eEEEEeEEEEEeecccccccccccee--------------ceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILN--------------GITGSVNPGEVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~--------------~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.+.|+||++.|+ .++.+|+ |+.+.+.+|+.++|+||+|+|||||++.|++.
T Consensus 133 ri~Fe~ltp~yP-------~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 133 KILFENLTPLHA-------NSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp SCCTTTSCEESC-------CSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred CceeccccccCC-------CCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHH
Confidence 578999999874 3456788 89999999999999999999999999999863
No 212
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.34 E-value=0.00011 Score=69.26 Aligned_cols=22 Identities=41% Similarity=0.742 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
No 213
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.29 E-value=0.00017 Score=84.80 Aligned_cols=30 Identities=30% Similarity=0.505 Sum_probs=27.5
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 178 GSVNPGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 178 ~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
+.+++|+.++|+||||+|||||+++|++.+
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l 262 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTT
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 368999999999999999999999999864
No 214
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.28 E-value=0.0012 Score=65.40 Aligned_cols=23 Identities=35% Similarity=0.573 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.|.|..
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 47899999999999999999854
No 215
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.26 E-value=2.3e-05 Score=82.78 Aligned_cols=52 Identities=21% Similarity=0.286 Sum_probs=41.3
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEe
Q 006571 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP 222 (640)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~ 222 (640)
.+.+++++++.+.+|.+++|+|++|+|||||++.|++.+. +.+|+|.+-+.+
T Consensus 42 ~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~--~~~~~v~v~~~d 93 (341)
T 2p67_A 42 STQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI--REGLKVAVIAVD 93 (341)
T ss_dssp HHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHH--HTTCCEEEEEEC
T ss_pred HHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHH--hcCCeEEEEeec
Confidence 3568899999999999999999999999999999998543 234555554443
No 216
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.23 E-value=0.00026 Score=77.22 Aligned_cols=69 Identities=17% Similarity=0.276 Sum_probs=39.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCC----------CCcccEEEECCEeCC----hhccCcEEEEccCCCCCCCCCHHHH
Q 006571 184 EVLALMGPSGSGKTTLLNLLSGRLME----------PTVGGSITYNDHPYS----KSLKSKIGFVTQDDVLFPHLTVKET 249 (640)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G~~~~----------~~~~G~I~~~G~~~~----~~~~~~i~yV~Q~~~l~~~lTV~En 249 (640)
-.++|+|+||+|||||+|.|+|.... .+..|.+.++|+++. ...++..++.+|....|..+++.++
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~ 260 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDS 260 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHH
Confidence 37999999999999999999986420 134689999998642 2234444555555555554445555
Q ss_pred HHH
Q 006571 250 LTY 252 (640)
Q Consensus 250 l~~ 252 (640)
+..
T Consensus 261 i~~ 263 (439)
T 1mky_A 261 IEK 263 (439)
T ss_dssp HHH
T ss_pred Hhh
Confidence 543
No 217
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.20 E-value=0.00083 Score=71.39 Aligned_cols=35 Identities=31% Similarity=0.422 Sum_probs=28.7
Q ss_pred cceeceE--EEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 006571 171 DILNGIT--GSVNPGEVLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 171 ~iL~~vs--~~i~~Ge~~aIvGpsGsGKSTLl~~L~G 205 (640)
+-|+.+- +-+++|+++.|.|++|+|||||...++.
T Consensus 49 ~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~ 85 (356)
T 1u94_A 49 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 85 (356)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3455543 3589999999999999999999988875
No 218
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.19 E-value=0.00015 Score=78.78 Aligned_cols=30 Identities=27% Similarity=0.531 Sum_probs=27.0
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 178 GSVNPGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 178 ~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
+++.+|++++|+|||||||||||++|++.+
T Consensus 21 ~~~~~~~~~~i~G~nG~GKstll~ai~~~~ 50 (430)
T 1w1w_A 21 VGFGESNFTSIIGPNGSGKSNMMDAISFVL 50 (430)
T ss_dssp EECTTCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhhh
Confidence 456789999999999999999999999855
No 219
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.19 E-value=0.00011 Score=73.14 Aligned_cols=37 Identities=32% Similarity=0.413 Sum_probs=26.5
Q ss_pred ceeceEEEEe---CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 006571 172 ILNGITGSVN---PGEVLALMGPSGSGKTTLLNLLSGRLM 208 (640)
Q Consensus 172 iL~~vs~~i~---~Ge~~aIvGpsGsGKSTLl~~L~G~~~ 208 (640)
=|.++|+++. +|.+++|.||+||||||+++.|+..+.
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 4677777776 999999999999999999999998653
No 220
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.16 E-value=0.00025 Score=69.26 Aligned_cols=45 Identities=11% Similarity=0.164 Sum_probs=31.5
Q ss_pred hCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHHCCCE-EEEEeCCCC
Q 006571 312 INPSLLFLDEPTSGL-DSTTALRIVQMLQDIAEAGKT-VVTTIHQPS 356 (640)
Q Consensus 312 ~~P~iLlLDEPTsgL-D~~s~~~i~~~L~~l~~~g~T-vI~~tH~~~ 356 (640)
.+|.+|++||.-.-- +......+.+.+....+.++. +|++++...
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~ 149 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASP 149 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCT
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCH
Confidence 568999999965432 233367788888887766665 788877643
No 221
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.15 E-value=0.001 Score=69.03 Aligned_cols=45 Identities=13% Similarity=0.199 Sum_probs=34.9
Q ss_pred hhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHHCCCEEEEEeCCC
Q 006571 311 IINPSLLFLDEPTS-GLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 355 (640)
Q Consensus 311 ~~~P~iLlLDEPTs-gLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~ 355 (640)
..+|++|++||+-. ..|...+..+...+..+.+.++.+|++++.+
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~ 141 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRH 141 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 45799999999866 2344778889999988877777788887754
No 222
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.11 E-value=7.1e-05 Score=84.05 Aligned_cols=50 Identities=28% Similarity=0.336 Sum_probs=39.8
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEe
Q 006571 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP 222 (640)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~ 222 (640)
..+++++++.+ +|+.++|+||||+|||||+++|++.+. ...|.|.++|..
T Consensus 96 ~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~--~~~~~i~~~~~~ 145 (543)
T 3m6a_A 96 YLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLG--RKFVRISLGGVR 145 (543)
T ss_dssp HHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHT--CEEEEECCCC--
T ss_pred HHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcC--CCeEEEEecccc
Confidence 45778888888 899999999999999999999998653 336777777643
No 223
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.06 E-value=0.00058 Score=64.03 Aligned_cols=27 Identities=37% Similarity=0.634 Sum_probs=23.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
++|..++|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999999853
No 224
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.05 E-value=0.00031 Score=68.52 Aligned_cols=30 Identities=27% Similarity=0.478 Sum_probs=25.1
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 006571 175 GITGSVNPGEVLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 175 ~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G 205 (640)
+.++.+.+| +++|+|||||||||++++|.-
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHHH
Confidence 455666665 999999999999999999974
No 225
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.04 E-value=0.00067 Score=65.14 Aligned_cols=24 Identities=42% Similarity=0.526 Sum_probs=21.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 006571 184 EVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
..+.|.||+|+|||||++.|+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 678899999999999999999743
No 226
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.03 E-value=0.00015 Score=76.95 Aligned_cols=41 Identities=22% Similarity=0.314 Sum_probs=31.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeC
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY 223 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~ 223 (640)
+++.+++|+|++|||||||+|.|+|.+. +.+|+|.+.+.+.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~--~~~~~v~V~~~dp 112 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLT--ERGHKLSVLAVDP 112 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEECCC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhh--hcCCeEEEEeecC
Confidence 5688999999999999999999998542 2356666655543
No 227
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.03 E-value=0.00069 Score=68.68 Aligned_cols=28 Identities=32% Similarity=0.599 Sum_probs=23.9
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 180 VNPGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 180 i~~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
+.++.-+.|.||+|+|||||++.|+..+
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3566779999999999999999999743
No 228
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.01 E-value=0.0029 Score=65.76 Aligned_cols=34 Identities=26% Similarity=0.407 Sum_probs=28.3
Q ss_pred ceeceE-EEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 006571 172 ILNGIT-GSVNPGEVLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 172 iL~~vs-~~i~~Ge~~aIvGpsGsGKSTLl~~L~G 205 (640)
-|+.+- +-+++|+++.|.||+|+|||||...++.
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344443 5689999999999999999999988874
No 229
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.99 E-value=0.00075 Score=73.88 Aligned_cols=35 Identities=14% Similarity=0.111 Sum_probs=29.9
Q ss_pred cceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 006571 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 171 ~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G 205 (640)
+-|+.+.+-+.+|+++.|.|++|+|||||.--++.
T Consensus 185 ~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 185 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 45666666789999999999999999999887774
No 230
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.97 E-value=0.00062 Score=64.83 Aligned_cols=35 Identities=34% Similarity=0.507 Sum_probs=20.9
Q ss_pred cceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 006571 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 171 ~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.+|+++++..++. .++|+|++|+|||||++.+.+.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999998888 6689999999999999999974
No 231
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.86 E-value=0.00044 Score=66.95 Aligned_cols=28 Identities=32% Similarity=0.475 Sum_probs=25.2
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 180 VNPGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 180 i~~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
..+|.+++|+||||||||||.+.|+..+
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4688999999999999999999999754
No 232
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.83 E-value=0.00048 Score=65.62 Aligned_cols=32 Identities=19% Similarity=0.352 Sum_probs=26.2
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 006571 175 GITGSVNPGEVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 175 ~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 46888889999999999999999999999964
No 233
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.82 E-value=0.0027 Score=63.05 Aligned_cols=53 Identities=28% Similarity=0.382 Sum_probs=41.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeC---------CCCcHHHhccCEEEEEc
Q 006571 313 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIH---------QPSSRLFHKFDKLILLG 370 (640)
Q Consensus 313 ~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH---------~~~~~i~~~~D~i~vL~ 370 (640)
+|+++++||.-- |+. .+++.++.+++.|.+||++-| ..+..+..+||+|.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~----~~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDD----RICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCT----HHHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcH----HHHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 489999999964 654 355666777777999999999 55567888999998875
No 234
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.80 E-value=0.00028 Score=67.78 Aligned_cols=37 Identities=30% Similarity=0.430 Sum_probs=31.9
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 006571 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
-..+++++|+..++++ ++|+|++|+|||||++.+.+.
T Consensus 12 ~~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 12 FSSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp -CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 3468999999988885 689999999999999999863
No 235
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.79 E-value=0.0058 Score=64.55 Aligned_cols=26 Identities=31% Similarity=0.625 Sum_probs=22.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcC
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.+..-+.|.||+|+|||||.+.|+..
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 45567899999999999999999964
No 236
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.77 E-value=0.004 Score=61.91 Aligned_cols=26 Identities=31% Similarity=0.470 Sum_probs=22.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcC
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
++..-+.|.||+|+|||||.+.|+..
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34456789999999999999999964
No 237
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.75 E-value=0.00035 Score=68.03 Aligned_cols=43 Identities=26% Similarity=0.211 Sum_probs=33.5
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCccc--EEEECCEe
Q 006571 178 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGG--SITYNDHP 222 (640)
Q Consensus 178 ~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G--~I~~~G~~ 222 (640)
..+++|.+++|+|++||||||+.+.|++.+. +..| .+.++|..
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~--~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLV--RDRRVHAYRLDGDN 64 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHH--HHHCCCEEEECHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhc--cccCCcEEEECChH
Confidence 3457899999999999999999999998542 2356 67777544
No 238
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.72 E-value=0.00013 Score=77.83 Aligned_cols=46 Identities=33% Similarity=0.530 Sum_probs=33.8
Q ss_pred CeeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 006571 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 147 ~~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
+..+.++|++..| +.+.+++++++.| +|+|++|+|||||++.|.|.
T Consensus 15 ~~~v~~~~l~~~~--------~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~ 60 (361)
T 2qag_A 15 PGYVGFANLPNQV--------HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLT 60 (361)
T ss_dssp ------CCHHHHH--------HTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTC
T ss_pred CceEEeccchHHh--------CCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCC
Confidence 3467777777654 3567899999987 99999999999999999874
No 239
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.68 E-value=0.0016 Score=69.40 Aligned_cols=32 Identities=22% Similarity=0.416 Sum_probs=27.6
Q ss_pred ceeceEEEEeCCeEEEEECCCCCcHHHHHHHHH
Q 006571 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLS 204 (640)
Q Consensus 172 iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~ 204 (640)
.+++..+++.+| +++|.|||||||||+|.+|.
T Consensus 15 ~~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 15 SHVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp TEEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred cccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 346778888775 99999999999999999986
No 240
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.68 E-value=0.00042 Score=75.38 Aligned_cols=47 Identities=21% Similarity=0.047 Sum_probs=39.2
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC
Q 006571 174 NGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS 224 (640)
Q Consensus 174 ~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~ 224 (640)
+++++. +|++++++|+|||||||++..|++.+. ..+|+|.+.+.|..
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~--~~g~~Vllvd~D~~ 137 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK--GKGRRPLLVAADTQ 137 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEEECCSS
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEeecccc
Confidence 567777 899999999999999999999998654 34788888777653
No 241
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.64 E-value=0.00079 Score=64.76 Aligned_cols=21 Identities=29% Similarity=0.544 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 006571 185 VLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G 205 (640)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999998
No 242
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.49 E-value=0.00067 Score=68.21 Aligned_cols=47 Identities=23% Similarity=0.390 Sum_probs=35.9
Q ss_pred ceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeC
Q 006571 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY 223 (640)
Q Consensus 172 iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~ 223 (640)
++++.+ ..+++.++.|+|+|||||||+.+.|+..+. .+.+.+++..+
T Consensus 22 ~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l~----~~~~~~~~D~~ 68 (253)
T 2p5t_B 22 LTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ----GNIVIIDGDSF 68 (253)
T ss_dssp HHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHTT----TCCEEECGGGG
T ss_pred HHccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhcC----CCcEEEecHHH
Confidence 444544 567889999999999999999999997542 24577777554
No 243
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.48 E-value=0.0019 Score=67.66 Aligned_cols=27 Identities=33% Similarity=0.460 Sum_probs=23.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
..+..+.|.||+|+|||||++.++..+
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999999643
No 244
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.46 E-value=0.00033 Score=74.27 Aligned_cols=37 Identities=27% Similarity=0.451 Sum_probs=33.8
Q ss_pred cceeceEEEEeCCeE--EEEECCCCCcHHHHHHHHHcCC
Q 006571 171 DILNGITGSVNPGEV--LALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 171 ~iL~~vs~~i~~Ge~--~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.+++++++.+++|++ ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 588899999999998 9999999999999999999854
No 245
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.46 E-value=0.0054 Score=61.38 Aligned_cols=56 Identities=13% Similarity=0.113 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHh---hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC---CCEEEEEeCC
Q 006571 298 GGERKRVCIGNEII---INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA---GKTVVTTIHQ 354 (640)
Q Consensus 298 GGqrqRv~IA~aL~---~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~---g~TvI~~tH~ 354 (640)
.|++.+-.+.+++. .+++++|+--+.+.++.. ...+++.++++... +.++|+++|-
T Consensus 87 ~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~-~~~~~~~l~~~~~~~~~~~~iilv~nK 148 (247)
T 3lxw_A 87 KTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQ-DQQAVRQVRDMFGEDVLKWMVIVFTRK 148 (247)
T ss_dssp HHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCHH-HHHHHHHHHHHHCGGGGGGEEEEEECG
T ss_pred cHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCHH-HHHHHHHHHHHhChhhhccEEEEEEch
Confidence 33444555555553 778876655444455544 45666777765422 5789999886
No 246
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.45 E-value=0.0015 Score=60.50 Aligned_cols=22 Identities=41% Similarity=0.742 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||++.|+|.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
No 247
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.43 E-value=0.0016 Score=61.81 Aligned_cols=28 Identities=43% Similarity=0.566 Sum_probs=25.1
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 180 VNPGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 180 i~~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
..+|.++.|+|++||||||+.+.|+..+
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3478999999999999999999999754
No 248
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.42 E-value=0.0016 Score=61.52 Aligned_cols=25 Identities=32% Similarity=0.642 Sum_probs=22.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHc
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G 205 (640)
.+|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999999985
No 249
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.42 E-value=0.00034 Score=72.55 Aligned_cols=47 Identities=21% Similarity=0.147 Sum_probs=36.5
Q ss_pred ec-eEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeC
Q 006571 174 NG-ITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY 223 (640)
Q Consensus 174 ~~-vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~ 223 (640)
++ ++++.+ |++++++|++|+||||++..|++.+. ..+|+|.+.+.+.
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~--~~g~~v~l~~~D~ 136 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYK--KKGFKVGLVGADV 136 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHH--HTTCCEEEEECCC
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEecCC
Confidence 45 777766 99999999999999999999998653 2356777665554
No 250
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.34 E-value=0.0015 Score=62.81 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=21.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 006571 183 GEVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 183 Ge~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
..+++|+|++||||||+.+.|++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999974
No 251
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.33 E-value=0.00041 Score=72.64 Aligned_cols=39 Identities=26% Similarity=0.605 Sum_probs=35.1
Q ss_pred cccceeceEEEEeCCeE--EEEECCCCCcHHHHHHHHHcCC
Q 006571 169 EKDILNGITGSVNPGEV--LALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~--~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
...+++.++..++.|++ +.+.||+|+||||+++++++.+
T Consensus 30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 45688899999999998 9999999999999999999854
No 252
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.23 E-value=0.0023 Score=59.27 Aligned_cols=22 Identities=32% Similarity=0.369 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
+++|.|++||||||+.+.|+.+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999864
No 253
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.22 E-value=0.0025 Score=59.60 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=22.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 183 GEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 183 Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
|.++.|.|++||||||+.+.|+.++
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999999754
No 254
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.21 E-value=0.038 Score=61.05 Aligned_cols=35 Identities=23% Similarity=0.168 Sum_probs=29.4
Q ss_pred cceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 006571 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 171 ~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G 205 (640)
+-|+.+..-+.+|+++.|.|++|+|||||+--++-
T Consensus 230 ~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 230 TGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp TTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 45666655699999999999999999999877764
No 255
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.17 E-value=0.015 Score=72.77 Aligned_cols=28 Identities=32% Similarity=0.515 Sum_probs=25.9
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 006571 179 SVNPGEVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 179 ~i~~Ge~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
=+++|+++.|.||+|+|||||+..++..
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~ 755 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAA 755 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHH
Confidence 5999999999999999999999999863
No 256
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.15 E-value=0.0018 Score=64.64 Aligned_cols=34 Identities=29% Similarity=0.653 Sum_probs=24.2
Q ss_pred ceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 172 iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++++++.+++| +.|.||+|+|||||+++|++..
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHc
Confidence 455556666665 8899999999999999999743
No 257
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.13 E-value=0.0031 Score=62.74 Aligned_cols=75 Identities=20% Similarity=0.255 Sum_probs=45.2
Q ss_pred HHHhhCCCEEEEeCCCCC-CCHHHHHHHHHHHHHHHHCCCEEEEEeCCC---------------------CcHHHhccCE
Q 006571 308 NEIIINPSLLFLDEPTSG-LDSTTALRIVQMLQDIAEAGKTVVTTIHQP---------------------SSRLFHKFDK 365 (640)
Q Consensus 308 ~aL~~~P~iLlLDEPTsg-LD~~s~~~i~~~L~~l~~~g~TvI~~tH~~---------------------~~~i~~~~D~ 365 (640)
.++..+|+++++||+-.- .+.......++.+..+...|..|+.++|-- .+.+++.||.
T Consensus 79 ~~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~Nlqh~esl~d~v~~itg~~v~e~vpd~~~~~a~~ 158 (228)
T 2r8r_A 79 ALLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVNVQHLESLNDQVRGITGVQVRETLPDWVLQEAFD 158 (228)
T ss_dssp HHHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBCHHHHHTCSE
T ss_pred HHHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEccccccccHHHHHHHHcCCCcCCcCccHHHhhCCe
Confidence 334578999999997642 332222333444444556688899998821 1234455666
Q ss_pred EEEEcCCeEEEecChHHHHHHHHh
Q 006571 366 LILLGKGSLLYFGKASEAMAYFSS 389 (640)
Q Consensus 366 i~vL~~G~iv~~G~~~~~~~~f~~ 389 (640)
|.+++ -+|+++.+.+..
T Consensus 159 v~lvD-------~~p~~l~~rl~~ 175 (228)
T 2r8r_A 159 LVLID-------LPPRELLERLRD 175 (228)
T ss_dssp EEEBC-------CCHHHHHHHHHT
T ss_pred EEEec-------CCHHHHHHHHHC
Confidence 66654 467777776654
No 258
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.12 E-value=0.0027 Score=59.86 Aligned_cols=22 Identities=50% Similarity=0.685 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||++.++|.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999984
No 259
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.12 E-value=0.0027 Score=62.87 Aligned_cols=28 Identities=25% Similarity=0.407 Sum_probs=24.1
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 006571 179 SVNPGEVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 179 ~i~~Ge~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.-.+|.+++|+|++||||||+.+.|++.
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3567889999999999999999999974
No 260
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.11 E-value=0.046 Score=56.79 Aligned_cols=28 Identities=29% Similarity=0.500 Sum_probs=23.7
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 180 VNPGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 180 i~~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
..|..-+.|.||+|+|||||.+.++...
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 42 RTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 3566778899999999999999999743
No 261
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.10 E-value=0.0028 Score=60.41 Aligned_cols=38 Identities=39% Similarity=0.412 Sum_probs=27.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCC-CCcccEEEECCE
Q 006571 184 EVLALMGPSGSGKTTLLNLLSGRLME-PTVGGSITYNDH 221 (640)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G~~~~-~~~~G~I~~~G~ 221 (640)
.+++|+|+||||||||++.|.+.+.. ...-|.|..++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 58899999999999999999975421 112356665543
No 262
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.06 E-value=0.0032 Score=59.27 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=21.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcC
Q 006571 182 PGEVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 182 ~Ge~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
+|.++.|.|++||||||+.+.|+-.
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999999999999853
No 263
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.06 E-value=0.0022 Score=69.00 Aligned_cols=44 Identities=18% Similarity=0.317 Sum_probs=32.3
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCC---------CCCcccEEEECCE
Q 006571 178 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLM---------EPTVGGSITYNDH 221 (640)
Q Consensus 178 ~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~---------~~~~~G~I~~~G~ 221 (640)
..+..|..++|+|+||+|||||+|.|+|... ..+..|.|.++|.
T Consensus 17 g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 17 GRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CCSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 3557888999999999999999999998521 1134577777653
No 264
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.97 E-value=0.0032 Score=59.54 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=22.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHc
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G 205 (640)
+++.++.|.|++||||||+.+.|+.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999999985
No 265
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.95 E-value=0.0036 Score=62.57 Aligned_cols=24 Identities=33% Similarity=0.547 Sum_probs=21.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 006571 183 GEVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 183 Ge~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.-+++|.||+||||||+.+.|+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 348999999999999999999963
No 266
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.95 E-value=0.011 Score=61.95 Aligned_cols=28 Identities=29% Similarity=0.447 Sum_probs=25.7
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 006571 178 GSVNPGEVLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 178 ~~i~~Ge~~aIvGpsGsGKSTLl~~L~G 205 (640)
+-+.+|.++.|.||+|+|||||...++.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 5688999999999999999999999984
No 267
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.91 E-value=0.072 Score=56.61 Aligned_cols=27 Identities=30% Similarity=0.544 Sum_probs=24.6
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHc
Q 006571 179 SVNPGEVLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 179 ~i~~Ge~~aIvGpsGsGKSTLl~~L~G 205 (640)
-+++|+++.|.||+|+|||||...++-
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 689999999999999999999887764
No 268
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.89 E-value=0.004 Score=57.28 Aligned_cols=19 Identities=42% Similarity=0.726 Sum_probs=18.3
Q ss_pred EEEEECCCCCcHHHHHHHH
Q 006571 185 VLALMGPSGSGKTTLLNLL 203 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L 203 (640)
+++|.||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 269
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.81 E-value=0.0051 Score=58.73 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=23.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 182 PGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 182 ~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
+|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999654
No 270
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.79 E-value=0.0044 Score=59.72 Aligned_cols=22 Identities=45% Similarity=0.752 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.+.|+||||||||||++.|...
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 3679999999999999999754
No 271
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.78 E-value=0.005 Score=57.99 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=21.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcC
Q 006571 182 PGEVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 182 ~Ge~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
++..+.|+|++||||||+.+.|+..
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999853
No 272
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.77 E-value=0.0049 Score=58.66 Aligned_cols=23 Identities=35% Similarity=0.628 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999743
No 273
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.77 E-value=0.0049 Score=63.29 Aligned_cols=36 Identities=28% Similarity=0.398 Sum_probs=28.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECC
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND 220 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G 220 (640)
..|.++.|.|||||||||+.+.|+..+. .|.+.+++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~----~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ----GNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT----TCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC----CCeEEEec
Confidence 4578999999999999999999986431 35566665
No 274
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.77 E-value=0.0047 Score=62.11 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=21.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 006571 184 EVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.+++|+||||||||||.+.|++.+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 368999999999999999999743
No 275
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.76 E-value=0.019 Score=55.47 Aligned_cols=53 Identities=23% Similarity=0.357 Sum_probs=40.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeC---------CCCcHHHhccCEEEEEc
Q 006571 313 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIH---------QPSSRLFHKFDKLILLG 370 (640)
Q Consensus 313 ~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH---------~~~~~i~~~~D~i~vL~ 370 (640)
+.+++++||.-- +|+. +++.+++++..|+.||++-+ .++.++..+||.|.-|+
T Consensus 81 ~~dvViIDEaqf-l~~~----~v~~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDE----IVEIVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TCSEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred cCCEEEEECCCC-CCHH----HHHHHHHHHhCCCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 479999999644 6643 35677777777999999999 44567778889887764
No 276
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.75 E-value=0.0057 Score=58.54 Aligned_cols=26 Identities=35% Similarity=0.569 Sum_probs=23.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 182 PGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 182 ~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
+|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57789999999999999999999644
No 277
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.71 E-value=0.0059 Score=59.33 Aligned_cols=24 Identities=38% Similarity=0.513 Sum_probs=21.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHc
Q 006571 182 PGEVLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 182 ~Ge~~aIvGpsGsGKSTLl~~L~G 205 (640)
.+-+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999996
No 278
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.68 E-value=0.01 Score=55.99 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||++.+.+.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999876654
No 279
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.67 E-value=0.0051 Score=57.84 Aligned_cols=25 Identities=36% Similarity=0.321 Sum_probs=22.3
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHc
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G 205 (640)
..+..+.|.|++||||||+.+.|+-
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence 3567899999999999999999984
No 280
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.67 E-value=0.047 Score=58.10 Aligned_cols=26 Identities=38% Similarity=0.684 Sum_probs=22.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcC
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++.-+.|.||+|+|||+|.+.|+..
T Consensus 146 ~~~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 146 APARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHh
Confidence 35667899999999999999999964
No 281
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.63 E-value=0.0064 Score=56.58 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=20.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHc
Q 006571 184 EVLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G 205 (640)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999985
No 282
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.59 E-value=0.0029 Score=60.95 Aligned_cols=23 Identities=43% Similarity=0.749 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
+++|.|++||||||+++.|+..+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999754
No 283
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.59 E-value=0.0062 Score=58.50 Aligned_cols=26 Identities=31% Similarity=0.415 Sum_probs=23.3
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcC
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
++|.+++|.|++||||||+.+.|+-.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999853
No 284
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.56 E-value=0.0061 Score=57.69 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=22.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHc
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G 205 (640)
.++.+++|.|++||||||+.+.|+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3677999999999999999999985
No 285
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.47 E-value=0.007 Score=58.17 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=23.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcC
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
++|.+++|.|++||||||+.+.|+-.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 56889999999999999999999853
No 286
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.45 E-value=0.0071 Score=56.62 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++||||||+.+.|+.+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4889999999999999999964
No 287
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.44 E-value=0.0066 Score=61.39 Aligned_cols=23 Identities=43% Similarity=0.655 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|||||||++.|+|..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999853
No 288
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.42 E-value=0.008 Score=57.18 Aligned_cols=22 Identities=36% Similarity=0.620 Sum_probs=20.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHc
Q 006571 184 EVLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G 205 (640)
.+++|+|++||||||+.+.|+.
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999996
No 289
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.40 E-value=0.0088 Score=56.29 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=21.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHc
Q 006571 182 PGEVLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 182 ~Ge~~aIvGpsGsGKSTLl~~L~G 205 (640)
++.+++|.|++||||||+.+.|+-
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999985
No 290
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.40 E-value=0.0074 Score=56.72 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
++.|.|++||||||+.+.|+-.+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998643
No 291
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.21 E-value=0.0098 Score=56.43 Aligned_cols=24 Identities=33% Similarity=0.398 Sum_probs=21.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 006571 184 EVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.+++|+|++|||||||++.|...+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhh
Confidence 378999999999999999998754
No 292
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.20 E-value=0.0097 Score=55.94 Aligned_cols=24 Identities=42% Similarity=0.666 Sum_probs=21.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 006571 184 EVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
-.++|+|++|+|||||++.|.+..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999999853
No 293
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.20 E-value=0.011 Score=57.60 Aligned_cols=26 Identities=35% Similarity=0.519 Sum_probs=22.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcC
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
++|-++.|+|++||||||+.+.|+..
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999863
No 294
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.17 E-value=0.0079 Score=57.06 Aligned_cols=26 Identities=27% Similarity=0.434 Sum_probs=23.1
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcC
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
+++.+++|.|++||||||+.+.|+..
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 45679999999999999999999853
No 295
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.13 E-value=0.0099 Score=54.06 Aligned_cols=23 Identities=13% Similarity=0.406 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.|.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999999753
No 296
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.12 E-value=0.011 Score=54.32 Aligned_cols=23 Identities=39% Similarity=0.738 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.+.|..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 47899999999999999999743
No 297
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.10 E-value=0.047 Score=69.30 Aligned_cols=153 Identities=16% Similarity=0.199 Sum_probs=86.1
Q ss_pred cceeceE--EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHH
Q 006571 171 DILNGIT--GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248 (640)
Q Consensus 171 ~iL~~vs--~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~E 248 (640)
+-|+.+- +=+++|+++.|.||+|+|||||...++.... . .| ..+.|+.-+..+-+ ++
T Consensus 369 ~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a--~-~G--------------~~vlyis~E~s~~~---~~- 427 (2050)
T 3cmu_A 369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ--R-EG--------------KTCAFIDAEHALDP---IY- 427 (2050)
T ss_dssp HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHH--T-TT--------------CCEEEECTTSCCCH---HH-
T ss_pred HHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHH--h-cC--------------CeEEEEEcCCCHHH---HH-
Confidence 3466554 3599999999999999999999888874321 1 11 12444443322111 00
Q ss_pred HHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCC
Q 006571 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII--INPSLLFLDEPTSGL 326 (640)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~--~~P~iLlLDEPTsgL 326 (640)
+. .+|++. .+-.+- ...+. .+-+.+++.++ .+|+++++|.-++-.
T Consensus 428 ----a~----------------------~lGvd~-~~L~I~----~~~~~--e~il~~~~~lv~~~~~~lIVIDSL~al~ 474 (2050)
T 3cmu_A 428 ----AR----------------------KLGVDI-DNLLCS----QPDTG--EQALEICDALARSGAVDVIVVDSVAALT 474 (2050)
T ss_dssp ----HH----------------------HTTCCT-TTCEEE----CCSSH--HHHHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred ----HH----------------------HcCCCH-HHeEEe----CCCCH--HHHHHHHHHHHHhcCCcEEEECCHHHhh
Confidence 11 112110 000110 11233 23456666665 479999999987655
Q ss_pred C-H------------HHHHHHHHHHHHH---HH-CCCEEEEEeCCCCc---------------HHHhccCEEEEEcCCeE
Q 006571 327 D-S------------TTALRIVQMLQDI---AE-AGKTVVTTIHQPSS---------------RLFHKFDKLILLGKGSL 374 (640)
Q Consensus 327 D-~------------~s~~~i~~~L~~l---~~-~g~TvI~~tH~~~~---------------~i~~~~D~i~vL~~G~i 374 (640)
. + ..+..+.+.|++| ++ .+.+||++.|--.. .+...+|-++.|++...
T Consensus 475 ~~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~VIlinQl~~~vg~~~g~p~~psGg~ale~~ADv~l~L~R~~~ 554 (2050)
T 3cmu_A 475 PKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGA 554 (2050)
T ss_dssp CHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTTCCSSCCEECSSHHHHHHHEEEEEEEEEEEE
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEeecccccccccCCCcCCCCcchhhhhCCEEEEEEeccc
Confidence 2 1 1223455666666 33 58899998874211 25567898888876554
Q ss_pred EEe
Q 006571 375 LYF 377 (640)
Q Consensus 375 v~~ 377 (640)
...
T Consensus 555 ~~~ 557 (2050)
T 3cmu_A 555 VKE 557 (2050)
T ss_dssp EEE
T ss_pred ccC
Confidence 333
No 298
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.09 E-value=0.011 Score=53.82 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999974
No 299
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.09 E-value=0.032 Score=50.68 Aligned_cols=42 Identities=7% Similarity=0.154 Sum_probs=29.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCC
Q 006571 313 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 355 (640)
Q Consensus 313 ~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~ 355 (640)
+..+|++||.- .|+...+..+.+.+.+....+..+|+++..+
T Consensus 75 ~~~~l~lDei~-~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~ 116 (143)
T 3co5_A 75 EGGVLYVGDIA-QYSRNIQTGITFIIGKAERCRVRVIASCSYA 116 (143)
T ss_dssp TTSEEEEEECT-TCCHHHHHHHHHHHHHHTTTTCEEEEEEEEC
T ss_pred CCCeEEEeChH-HCCHHHHHHHHHHHHhCCCCCEEEEEecCCC
Confidence 35689999964 6788888888888776433355677777654
No 300
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.09 E-value=0.008 Score=56.28 Aligned_cols=26 Identities=35% Similarity=0.514 Sum_probs=18.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 182 PGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 182 ~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
++.++.|.|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999998543
No 301
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.06 E-value=0.012 Score=55.77 Aligned_cols=23 Identities=39% Similarity=0.621 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
+++|.|++||||||+.+.|+-++
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998643
No 302
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.04 E-value=0.0092 Score=54.37 Aligned_cols=23 Identities=30% Similarity=0.589 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.+.|..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 47899999999999999998743
No 303
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.04 E-value=0.011 Score=53.45 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998643
No 304
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.03 E-value=0.017 Score=60.22 Aligned_cols=36 Identities=31% Similarity=0.327 Sum_probs=31.7
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 006571 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
...+++..+.+ .|.-++|+|+||+|||||...|.++
T Consensus 132 ~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 132 TTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred ceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 46788888887 8899999999999999999999873
No 305
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.00 E-value=0.012 Score=53.30 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999853
No 306
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.99 E-value=0.011 Score=53.42 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.+.+..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999999743
No 307
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.97 E-value=0.011 Score=53.41 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++++|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999999753
No 308
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=94.96 E-value=0.013 Score=59.80 Aligned_cols=22 Identities=50% Similarity=0.872 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||+|.|+|.
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999984
No 309
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.96 E-value=0.013 Score=53.61 Aligned_cols=22 Identities=41% Similarity=0.628 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||++.+.+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 3789999999999999999864
No 310
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.94 E-value=0.012 Score=53.54 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999999854
No 311
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.93 E-value=0.012 Score=57.49 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=21.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcC
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++.+++|.|++||||||+.+.|+..
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34678999999999999999999853
No 312
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.90 E-value=0.013 Score=53.54 Aligned_cols=22 Identities=27% Similarity=0.372 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999975
No 313
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=94.89 E-value=0.012 Score=54.24 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.|.+..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999743
No 314
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.88 E-value=0.013 Score=55.89 Aligned_cols=22 Identities=27% Similarity=0.587 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
+++|.|++||||||+.+.|+.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 7999999999999999999974
No 315
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.88 E-value=0.013 Score=53.32 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999754
No 316
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.87 E-value=0.015 Score=55.54 Aligned_cols=24 Identities=33% Similarity=0.493 Sum_probs=21.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 006571 183 GEVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 183 Ge~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
+-+++|.|++||||||+.+.|+..
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999853
No 317
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.85 E-value=0.013 Score=53.18 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||++.+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
No 318
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.85 E-value=0.012 Score=53.64 Aligned_cols=23 Identities=35% Similarity=0.469 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47899999999999999999753
No 319
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.85 E-value=0.013 Score=53.91 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.+.+..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999999743
No 320
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.85 E-value=0.013 Score=53.97 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.+.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998743
No 321
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.84 E-value=0.017 Score=53.28 Aligned_cols=25 Identities=36% Similarity=0.522 Sum_probs=21.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcC
Q 006571 182 PGEVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 182 ~Ge~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
+.-.++|+|++|+|||||++.+.+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456899999999999999999974
No 322
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.82 E-value=0.24 Score=62.17 Aligned_cols=154 Identities=17% Similarity=0.233 Sum_probs=86.8
Q ss_pred cceeceE--EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHH
Q 006571 171 DILNGIT--GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248 (640)
Q Consensus 171 ~iL~~vs--~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~E 248 (640)
+-|+.+- +=+++|+++.|.||+|+|||||.--++.... ..| ..+.|+.-+...-+ +
T Consensus 369 ~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~---~~G--------------~~vlyis~E~s~~~---~-- 426 (1706)
T 3cmw_A 369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ---REG--------------KTCAFIDAEHALDP---I-- 426 (1706)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHH---HTT--------------CCEEEECTTSCCCH---H--
T ss_pred HHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH---HhC--------------CCeEEEEccCchHH---H--
Confidence 4566664 3599999999999999999999887764221 111 23556654432211 0
Q ss_pred HHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCC
Q 006571 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII--INPSLLFLDEPTSGL 326 (640)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~--~~P~iLlLDEPTsgL 326 (640)
++ +.+|++. .+-.+- ..-++.| -+.+++.++ .+|+++++|..+.=.
T Consensus 427 ---~a----------------------~~lGvd~-~~L~i~----~~~~~e~--~l~~l~~lv~~~~~~lVVIDSL~al~ 474 (1706)
T 3cmw_A 427 ---YA----------------------RKLGVDI-DNLLCS----QPDTGEQ--ALEICDALARSGAVDVIVVDSVAALT 474 (1706)
T ss_dssp ---HH----------------------HHTTCCG-GGCEEE----CCSSHHH--HHHHHHHHHHHTCCSEEEESCSTTCC
T ss_pred ---HH----------------------HHcCCCH-HHeEEc----CCCCHHH--HHHHHHHHHHhcCCCEEEECCHHHhh
Confidence 01 1122210 000010 0112333 234555554 479999999998766
Q ss_pred CH-------------HHHHHHHHHHHHH---H-HCCCEEEEEeCCC---------------CcHHHhccCEEEEEcCCeE
Q 006571 327 DS-------------TTALRIVQMLQDI---A-EAGKTVVTTIHQP---------------SSRLFHKFDKLILLGKGSL 374 (640)
Q Consensus 327 D~-------------~s~~~i~~~L~~l---~-~~g~TvI~~tH~~---------------~~~i~~~~D~i~vL~~G~i 374 (640)
.. .....+.+.+++| + +.+.+||++.|-. ...+...+|-++.+.+.+.
T Consensus 475 ~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~~~vg~~fg~~~~p~gg~ale~~ADv~L~L~R~~~ 554 (1706)
T 3cmw_A 475 PKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGA 554 (1706)
T ss_dssp CHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSCCEEESSCSHHHHHEEEEEEEEEEEE
T ss_pred ccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEeecccccccccCCCccCCCCcceeeeCCEEEEEEeccc
Confidence 41 1223445555555 3 3589999998852 1235577898888876554
Q ss_pred EEec
Q 006571 375 LYFG 378 (640)
Q Consensus 375 v~~G 378 (640)
...|
T Consensus 555 ~~~g 558 (1706)
T 3cmw_A 555 VKEG 558 (1706)
T ss_dssp EEET
T ss_pred cccC
Confidence 3333
No 323
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=94.81 E-value=0.023 Score=60.43 Aligned_cols=38 Identities=26% Similarity=0.342 Sum_probs=28.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCC---------CCCcccEEEECC
Q 006571 183 GEVLALMGPSGSGKTTLLNLLSGRLM---------EPTVGGSITYND 220 (640)
Q Consensus 183 Ge~~aIvGpsGsGKSTLl~~L~G~~~---------~~~~~G~I~~~G 220 (640)
|-.++|+|.+|+|||||+|.|+|... ..+..|.+.+++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 34689999999999999999998321 012457777765
No 324
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.79 E-value=0.012 Score=55.31 Aligned_cols=23 Identities=39% Similarity=0.562 Sum_probs=20.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 006571 184 EVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
-.++|+|++|+|||||++.+.+.
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999974
No 325
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.79 E-value=0.015 Score=56.18 Aligned_cols=21 Identities=33% Similarity=0.466 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 006571 185 VLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G 205 (640)
.++|.||+||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999975
No 326
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.77 E-value=0.012 Score=55.20 Aligned_cols=23 Identities=39% Similarity=0.580 Sum_probs=20.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 006571 184 EVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
-.++|+|++|+|||||++.|.+.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999975
No 327
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.76 E-value=0.22 Score=54.24 Aligned_cols=26 Identities=35% Similarity=0.491 Sum_probs=23.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 182 PGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 182 ~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
++.+++++|++|+||||++..|+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 56899999999999999999999644
No 328
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=94.76 E-value=0.0092 Score=63.65 Aligned_cols=45 Identities=11% Similarity=0.117 Sum_probs=36.9
Q ss_pred CCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHHCCCEEEEEeCCCCc
Q 006571 313 NPSLLFLDEPTSGLD---STTALRIVQMLQDIAEAGKTVVTTIHQPSS 357 (640)
Q Consensus 313 ~P~iLlLDEPTsgLD---~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~ 357 (640)
.|.++++||.=.-++ +.....+.+.+++.++.|..++++||.+++
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d 309 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVID 309 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGG
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHH
Confidence 578999999988774 667777888888877778899999999864
No 329
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.76 E-value=0.016 Score=54.56 Aligned_cols=22 Identities=41% Similarity=0.463 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
+++|.|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999864
No 330
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.72 E-value=0.014 Score=53.84 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||++.+.+.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4889999999999999999975
No 331
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.72 E-value=0.017 Score=55.16 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHc
Q 006571 183 GEVLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 183 Ge~~aIvGpsGsGKSTLl~~L~G 205 (640)
..+++|.|++||||||+.+.|+-
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999985
No 332
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.70 E-value=0.013 Score=57.03 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=21.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcC
Q 006571 182 PGEVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 182 ~Ge~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.+.++.|+|++||||||+.+.|+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3467899999999999999999853
No 333
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.68 E-value=0.015 Score=52.77 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999974
No 334
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.68 E-value=0.015 Score=54.40 Aligned_cols=23 Identities=43% Similarity=0.592 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.|.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 68899999999999999999853
No 335
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.67 E-value=0.015 Score=54.34 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|+.|+|||||++.|.+..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999999853
No 336
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.66 E-value=0.016 Score=53.92 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.|.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999999754
No 337
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.66 E-value=0.015 Score=53.87 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=20.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 006571 184 EVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.+++|.|++||||||+.+.|+.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999853
No 338
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.64 E-value=0.017 Score=54.06 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRLM 208 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~~ 208 (640)
.++|+|++|+|||||++.|.|...
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 478999999999999999998653
No 339
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.62 E-value=0.019 Score=53.24 Aligned_cols=23 Identities=39% Similarity=0.485 Sum_probs=21.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 006571 184 EVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
++++|.|+.||||||+.+.|+..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999853
No 340
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.62 E-value=0.018 Score=54.04 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=20.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHHc
Q 006571 183 GEVLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 183 Ge~~aIvGpsGsGKSTLl~~L~G 205 (640)
..+++|.|++||||||+.+.|+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999985
No 341
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.62 E-value=0.018 Score=53.08 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||++.+.+.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4789999999999999999974
No 342
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.61 E-value=0.014 Score=54.29 Aligned_cols=22 Identities=36% Similarity=0.643 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||++.+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 3789999999999999999974
No 343
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.61 E-value=0.02 Score=57.64 Aligned_cols=25 Identities=28% Similarity=0.313 Sum_probs=22.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcC
Q 006571 182 PGEVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 182 ~Ge~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
++.++.|.|++||||||+.+.|+..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999864
No 344
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.60 E-value=0.018 Score=55.72 Aligned_cols=22 Identities=36% Similarity=0.459 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+||+||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999853
No 345
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.59 E-value=0.016 Score=53.90 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.+.+..
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999743
No 346
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.59 E-value=0.019 Score=52.92 Aligned_cols=21 Identities=43% Similarity=0.445 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 006571 185 VLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G 205 (640)
.++|.|++||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999985
No 347
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.59 E-value=0.017 Score=52.79 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=20.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 006571 184 EVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
-.++|+|++|+|||||++.+.+.
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999864
No 348
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=94.57 E-value=0.13 Score=51.15 Aligned_cols=53 Identities=25% Similarity=0.291 Sum_probs=44.3
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC---------CCcHHHhccCEEEEEc
Q 006571 312 INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQ---------PSSRLFHKFDKLILLG 370 (640)
Q Consensus 312 ~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~---------~~~~i~~~~D~i~vL~ 370 (640)
.+.+++++||.---.| +.+.++.+++.|+.||++-++ .+..+..+||.|.-|+
T Consensus 89 ~~~dvViIDEaQF~~~------v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD------IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT------HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh------HHHHHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 6789999999987754 566666666689999999999 8888999999998875
No 349
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.57 E-value=0.017 Score=54.40 Aligned_cols=23 Identities=39% Similarity=0.582 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.|.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999999743
No 350
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.52 E-value=0.018 Score=52.31 Aligned_cols=21 Identities=33% Similarity=0.464 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 006571 186 LALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 186 ~aIvGpsGsGKSTLl~~L~G~ 206 (640)
++|+|++|+|||||++.+.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999863
No 351
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.48 E-value=0.016 Score=54.44 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=20.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 006571 184 EVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.+++|+|++||||||+.+.|+.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999853
No 352
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.44 E-value=0.022 Score=56.69 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=21.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHc
Q 006571 182 PGEVLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 182 ~Ge~~aIvGpsGsGKSTLl~~L~G 205 (640)
++-+++|.||+||||||+.+.|+-
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999985
No 353
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.44 E-value=0.017 Score=53.06 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||++.+.+.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
No 354
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.44 E-value=0.019 Score=53.02 Aligned_cols=23 Identities=39% Similarity=0.495 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.+.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 57899999999999999999743
No 355
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=94.42 E-value=0.019 Score=53.14 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.|.+..
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 48899999999999999999743
No 356
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.42 E-value=0.012 Score=54.70 Aligned_cols=24 Identities=33% Similarity=0.434 Sum_probs=20.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHc
Q 006571 182 PGEVLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 182 ~Ge~~aIvGpsGsGKSTLl~~L~G 205 (640)
+.-.++|+|++|+|||||++.+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 344789999999999999999875
No 357
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.41 E-value=0.019 Score=52.68 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.|.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999999753
No 358
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=94.38 E-value=0.02 Score=59.05 Aligned_cols=25 Identities=44% Similarity=0.656 Sum_probs=21.9
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcC
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
+.| .++|+|++|+|||||+|.|.|.
T Consensus 6 ~~g-~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 6 YSG-FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEE-EEEEECSTTSSHHHHHHHHHTS
T ss_pred cCC-EEEEECCCCCCHHHHHHHHhCC
Confidence 344 5899999999999999999985
No 359
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=94.34 E-value=0.02 Score=52.79 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.+.+..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999999753
No 360
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.34 E-value=0.02 Score=53.59 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.|.+..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58899999999999999999753
No 361
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=94.30 E-value=0.02 Score=57.57 Aligned_cols=22 Identities=41% Similarity=0.567 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|||||||+|.|.|.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999984
No 362
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=94.30 E-value=0.022 Score=58.91 Aligned_cols=23 Identities=43% Similarity=0.611 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||+|.|.|..
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 78999999999999999999853
No 363
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.25 E-value=0.021 Score=54.89 Aligned_cols=23 Identities=43% Similarity=0.702 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.|.+..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999999854
No 364
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=94.24 E-value=0.018 Score=58.30 Aligned_cols=22 Identities=45% Similarity=0.582 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||+|.|.|.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3889999999999999999874
No 365
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.23 E-value=0.043 Score=53.50 Aligned_cols=36 Identities=25% Similarity=0.288 Sum_probs=29.0
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 006571 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
...++..-.. ..|..++|+||+|+|||||...|+.+
T Consensus 22 ~~~lHa~~v~-~~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 22 RRSMHGVLVD-IYGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp CCCEESEEEE-ETTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred ceeeeEEEEE-ECCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3466765555 46789999999999999999999854
No 366
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=94.22 E-value=0.022 Score=53.92 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.+.+..
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998743
No 367
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.20 E-value=0.1 Score=51.32 Aligned_cols=53 Identities=21% Similarity=0.273 Sum_probs=41.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeC---------CCCcHHHhccCEEEEEc
Q 006571 313 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIH---------QPSSRLFHKFDKLILLG 370 (640)
Q Consensus 313 ~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH---------~~~~~i~~~~D~i~vL~ 370 (640)
+.+++++||.-- +|+. +++.+++++..|+.||++-+ .++..+..+||.|.-|+
T Consensus 101 ~~dvViIDEaQF-~~~~----~V~~l~~l~~~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGD----IVEVVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp SCCEEEECCGGG-SCTT----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCHH----HHHHHHHHhhCCCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence 579999999866 6643 33677777777999999999 66677888888888775
No 368
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=94.20 E-value=0.022 Score=53.95 Aligned_cols=23 Identities=35% Similarity=0.601 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999999753
No 369
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.19 E-value=0.02 Score=53.14 Aligned_cols=23 Identities=26% Similarity=0.533 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.+.+..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998753
No 370
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.17 E-value=0.037 Score=58.20 Aligned_cols=26 Identities=35% Similarity=0.576 Sum_probs=23.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 182 PGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 182 ~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
++.++.|+||+|||||||...|+.++
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 45689999999999999999999644
No 371
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.17 E-value=0.023 Score=53.32 Aligned_cols=23 Identities=35% Similarity=0.410 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.|.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999999753
No 372
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=94.15 E-value=0.023 Score=52.98 Aligned_cols=26 Identities=31% Similarity=0.442 Sum_probs=22.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 182 PGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 182 ~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
+.=.++|+|++|+|||||++.+.+..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 44568999999999999999999743
No 373
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.14 E-value=0.023 Score=53.25 Aligned_cols=23 Identities=39% Similarity=0.530 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.|.+..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999999743
No 374
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.12 E-value=0.022 Score=53.58 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||++.|.+.
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 5899999999999999999974
No 375
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=94.12 E-value=0.02 Score=54.53 Aligned_cols=21 Identities=43% Similarity=0.692 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 006571 185 VLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G 205 (640)
.++|+|++|+|||||++.+.|
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999975
No 376
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.11 E-value=0.025 Score=56.36 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=21.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 006571 184 EVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
-+++|.|++||||||+.+.|+..+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998633
No 377
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=94.10 E-value=0.022 Score=60.69 Aligned_cols=21 Identities=33% Similarity=0.589 Sum_probs=19.7
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 006571 186 LALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 186 ~aIvGpsGsGKSTLl~~L~G~ 206 (640)
++|+|++|+|||||+|.|++.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999974
No 378
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.09 E-value=0.03 Score=51.73 Aligned_cols=27 Identities=30% Similarity=0.495 Sum_probs=22.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
..+..+.|.||+|+|||||++.++..+
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345678999999999999999998643
No 379
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.08 E-value=0.024 Score=52.55 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 46899999999999999999753
No 380
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.06 E-value=0.022 Score=53.21 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.+.+..
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999753
No 381
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=94.06 E-value=0.028 Score=57.29 Aligned_cols=25 Identities=36% Similarity=0.594 Sum_probs=22.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 183 GEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 183 Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
...+.|.||+|+|||||.++|++.+
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHH
Confidence 3689999999999999999999754
No 382
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.05 E-value=0.03 Score=51.69 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999874
No 383
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.05 E-value=0.028 Score=55.06 Aligned_cols=21 Identities=43% Similarity=0.678 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 006571 185 VLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G 205 (640)
+++|.|++||||||+.+.|+-
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999985
No 384
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.05 E-value=0.023 Score=53.60 Aligned_cols=23 Identities=22% Similarity=0.459 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.+.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999999753
No 385
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=94.04 E-value=0.025 Score=52.33 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||++.+.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
No 386
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=94.03 E-value=0.025 Score=56.33 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||++.|.|.
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
No 387
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=94.02 E-value=0.032 Score=57.15 Aligned_cols=23 Identities=30% Similarity=0.583 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|+.|+|||||++.|.|.-
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999964
No 388
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.01 E-value=0.027 Score=53.38 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999753
No 389
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=94.01 E-value=0.028 Score=56.57 Aligned_cols=22 Identities=45% Similarity=0.658 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||++.|+|.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999984
No 390
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.01 E-value=0.026 Score=54.93 Aligned_cols=25 Identities=32% Similarity=0.474 Sum_probs=21.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcC
Q 006571 182 PGEVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 182 ~Ge~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
+|-.+.|+|++||||||+.+.|+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3557899999999999999999853
No 391
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.98 E-value=0.029 Score=54.06 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=20.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHHc
Q 006571 183 GEVLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 183 Ge~~aIvGpsGsGKSTLl~~L~G 205 (640)
.-+++|.|+.||||||+.+.|+.
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999985
No 392
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=93.97 E-value=0.026 Score=53.58 Aligned_cols=21 Identities=43% Similarity=0.812 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 006571 185 VLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G 205 (640)
.++|+|++|+|||||++.+.|
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999996
No 393
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=93.95 E-value=0.027 Score=52.79 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||++.+.+.
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
No 394
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=93.91 E-value=0.027 Score=53.32 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRLM 208 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~~ 208 (640)
.++|+|++|+|||||++.+.+...
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 588999999999999999998643
No 395
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.91 E-value=0.034 Score=54.47 Aligned_cols=27 Identities=41% Similarity=0.644 Sum_probs=23.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.+|.+++|.|++||||||+.+.|+..+
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHH
Confidence 468999999999999999999998654
No 396
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.91 E-value=0.027 Score=54.33 Aligned_cols=23 Identities=39% Similarity=0.551 Sum_probs=20.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 006571 184 EVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
-.++|+|++|+|||||++.|++.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 47899999999999999999874
No 397
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.89 E-value=0.025 Score=56.10 Aligned_cols=28 Identities=36% Similarity=0.616 Sum_probs=21.5
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 180 VNPGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 180 i~~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
..+|.++.|.|++||||||+.+.|+..+
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999999998644
No 398
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=93.88 E-value=0.026 Score=53.28 Aligned_cols=22 Identities=27% Similarity=0.604 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||++.|.+.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999874
No 399
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=93.86 E-value=0.025 Score=53.70 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=21.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 006571 184 EVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
=.++|+|++|+|||||++.|.+..
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCcCHHHHHHHHHhCC
Confidence 368899999999999999999854
No 400
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=93.86 E-value=0.028 Score=57.00 Aligned_cols=22 Identities=50% Similarity=0.809 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|.+|||||||+|.|.|.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
No 401
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=93.84 E-value=0.029 Score=52.78 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999999743
No 402
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=93.83 E-value=0.027 Score=52.19 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||++.+.+.
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5789999999999999999853
No 403
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=93.82 E-value=0.029 Score=52.41 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.|.+..
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58899999999999999999753
No 404
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.82 E-value=0.026 Score=53.04 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.+.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 47899999999999999999743
No 405
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=93.81 E-value=0.017 Score=55.74 Aligned_cols=23 Identities=35% Similarity=0.588 Sum_probs=21.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 006571 184 EVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
-.++|+|++|+|||||++.|.|.
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTC
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Confidence 36899999999999999999985
No 406
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=93.78 E-value=0.03 Score=52.61 Aligned_cols=22 Identities=41% Similarity=0.584 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||++.+.+.
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999974
No 407
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.77 E-value=0.029 Score=57.16 Aligned_cols=21 Identities=48% Similarity=0.629 Sum_probs=20.0
Q ss_pred eEEEEECCCCCcHHHHHHHHH
Q 006571 184 EVLALMGPSGSGKTTLLNLLS 204 (640)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~ 204 (640)
-+++|.|++||||||+.+.|+
T Consensus 76 ~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999998
No 408
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.77 E-value=0.03 Score=53.34 Aligned_cols=24 Identities=33% Similarity=0.422 Sum_probs=21.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 006571 184 EVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
=.++|+|++|+|||||++.|.+..
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 368999999999999999999743
No 409
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.76 E-value=0.031 Score=52.83 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||++.+.+.
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999975
No 410
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=93.75 E-value=0.027 Score=53.55 Aligned_cols=23 Identities=43% Similarity=0.543 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999743
No 411
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=93.75 E-value=0.029 Score=53.38 Aligned_cols=22 Identities=27% Similarity=0.572 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||++.+.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4789999999999999999874
No 412
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.75 E-value=0.03 Score=52.42 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 006571 184 EVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
=.++|+|++|+|||||++.+.+.
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999963
No 413
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=93.73 E-value=0.031 Score=52.65 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.+.+..
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58899999999999999999753
No 414
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=93.73 E-value=0.029 Score=52.65 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||++.+.+.
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999974
No 415
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=93.72 E-value=0.032 Score=54.33 Aligned_cols=22 Identities=27% Similarity=0.575 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||++.|.+.
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999873
No 416
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=93.71 E-value=0.023 Score=53.33 Aligned_cols=22 Identities=36% Similarity=0.481 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||++.+.+.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999874
No 417
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.71 E-value=0.037 Score=54.51 Aligned_cols=27 Identities=30% Similarity=0.457 Sum_probs=23.2
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcC
Q 006571 180 VNPGEVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 180 i~~Ge~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
+++..++.|+||+||||+|..+.|+-.
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 355678999999999999999999953
No 418
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.70 E-value=0.032 Score=54.02 Aligned_cols=21 Identities=24% Similarity=0.376 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 006571 185 VLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G 205 (640)
.++|.|++||||||+.+.|+-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999985
No 419
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=93.70 E-value=0.031 Score=52.96 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=21.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 006571 184 EVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
=.++|+|++|+|||||++.+.+..
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 467999999999999999999743
No 420
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=93.67 E-value=0.034 Score=53.31 Aligned_cols=23 Identities=39% Similarity=0.485 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.|.+..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999999743
No 421
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.66 E-value=0.018 Score=59.13 Aligned_cols=24 Identities=21% Similarity=0.479 Sum_probs=18.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHc
Q 006571 182 PGEVLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 182 ~Ge~~aIvGpsGsGKSTLl~~L~G 205 (640)
++-+++|.||+||||||+.+.|+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999985
No 422
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.63 E-value=0.037 Score=56.33 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=20.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHc
Q 006571 184 EVLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G 205 (640)
.++.|+|++||||||+.+.|+-
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999995
No 423
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=93.62 E-value=0.028 Score=52.41 Aligned_cols=22 Identities=32% Similarity=0.449 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||++.+.+.
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999974
No 424
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.61 E-value=0.04 Score=54.19 Aligned_cols=25 Identities=36% Similarity=0.531 Sum_probs=21.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcC
Q 006571 182 PGEVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 182 ~Ge~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.+..+.|+|++||||||+.+.|+-.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3467899999999999999999853
No 425
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.60 E-value=0.03 Score=53.75 Aligned_cols=23 Identities=35% Similarity=0.599 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.+.+..
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999988643
No 426
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=93.59 E-value=0.039 Score=55.90 Aligned_cols=23 Identities=30% Similarity=0.560 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|.+|+|||||++.|.|..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999854
No 427
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=93.59 E-value=0.026 Score=52.06 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||++.+.+.
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999974
No 428
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.52 E-value=0.032 Score=53.33 Aligned_cols=23 Identities=35% Similarity=0.458 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999743
No 429
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=93.50 E-value=0.038 Score=52.24 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=20.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 006571 184 EVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
=.++|+|++|+|||||++.+.+.
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC-
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999864
No 430
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=93.45 E-value=0.037 Score=52.03 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.+.+..
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHHhCC
Confidence 57899999999999999988643
No 431
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.42 E-value=0.04 Score=54.99 Aligned_cols=26 Identities=23% Similarity=0.495 Sum_probs=23.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 182 PGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 182 ~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
+|.+++|.|++||||||+++.|...+
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999998654
No 432
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=93.38 E-value=0.037 Score=53.33 Aligned_cols=22 Identities=36% Similarity=0.643 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||++.+.+.
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5889999999999999999974
No 433
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=93.38 E-value=0.041 Score=52.65 Aligned_cols=23 Identities=30% Similarity=0.317 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.+.+..
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999743
No 434
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=93.36 E-value=0.035 Score=53.41 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.+.+..
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999999853
No 435
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.33 E-value=0.038 Score=51.07 Aligned_cols=27 Identities=26% Similarity=0.417 Sum_probs=22.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
..+..+.|.||+|+|||||++.++..+
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345677899999999999999998643
No 436
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=93.31 E-value=0.026 Score=52.41 Aligned_cols=22 Identities=45% Similarity=0.557 Sum_probs=9.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999863
No 437
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.26 E-value=0.041 Score=59.36 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=23.1
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHc
Q 006571 180 VNPGEVLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 180 i~~Ge~~aIvGpsGsGKSTLl~~L~G 205 (640)
-.+..++.|+|++||||||+.+.|+.
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34578999999999999999999985
No 438
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.22 E-value=0.046 Score=53.59 Aligned_cols=26 Identities=31% Similarity=0.466 Sum_probs=23.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 182 PGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 182 ~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
+|.++.+.|++||||||+++.|...+
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 48899999999999999999998654
No 439
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=93.20 E-value=0.038 Score=52.52 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999999743
No 440
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=93.19 E-value=0.036 Score=52.44 Aligned_cols=23 Identities=30% Similarity=0.367 Sum_probs=20.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHc
Q 006571 183 GEVLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 183 Ge~~aIvGpsGsGKSTLl~~L~G 205 (640)
.=.++|+|++|+|||||++.+.+
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCS
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 34589999999999999999975
No 441
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.16 E-value=0.05 Score=59.61 Aligned_cols=35 Identities=26% Similarity=0.432 Sum_probs=29.8
Q ss_pred cceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 006571 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 171 ~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.+++.+ ..+-+|+.++|+||||+|||||++.|+..
T Consensus 140 r~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~ 174 (473)
T 1sky_E 140 KVVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHN 174 (473)
T ss_dssp HHHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHH
T ss_pred hHHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhh
Confidence 466666 66778999999999999999999999863
No 442
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=93.15 E-value=0.047 Score=53.69 Aligned_cols=27 Identities=33% Similarity=0.529 Sum_probs=24.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
++|.++.+.|++||||||+.+.|...+
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l 29 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKL 29 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999999999755
No 443
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.11 E-value=0.055 Score=53.49 Aligned_cols=27 Identities=37% Similarity=0.439 Sum_probs=23.9
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.+|.+++|.|++||||||+.+.|+..+
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l 45 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYL 45 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999998644
No 444
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.09 E-value=0.055 Score=56.37 Aligned_cols=25 Identities=36% Similarity=0.644 Sum_probs=22.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 183 GEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 183 Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
+.+++|+||+|||||||...|+-.+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4589999999999999999999643
No 445
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=93.09 E-value=0.061 Score=52.50 Aligned_cols=60 Identities=22% Similarity=0.184 Sum_probs=39.3
Q ss_pred hhCCCEEEEeCCCC----CCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCc---------HHHhccCEEEEEc
Q 006571 311 IINPSLLFLDEPTS----GLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSS---------RLFHKFDKLILLG 370 (640)
Q Consensus 311 ~~~P~iLlLDEPTs----gLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~---------~i~~~~D~i~vL~ 370 (640)
-.+|+++++|--+. .-|.....+++..|+.++++ +.++++++|.... .+...+|-|+.|+
T Consensus 133 ~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~ 206 (251)
T 2zts_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred hcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence 34788999986432 11444556777788887754 8999999886321 1234678887774
No 446
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.08 E-value=0.052 Score=53.58 Aligned_cols=26 Identities=27% Similarity=0.400 Sum_probs=23.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 182 PGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 182 ~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
+|.+++|-|+.||||||+.+.|+..+
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 36789999999999999999999654
No 447
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.08 E-value=0.047 Score=57.43 Aligned_cols=24 Identities=29% Similarity=0.537 Sum_probs=21.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 006571 184 EVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.+++|+||+|||||||.+.|+..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 479999999999999999999744
No 448
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=93.07 E-value=0.053 Score=51.85 Aligned_cols=43 Identities=12% Similarity=0.156 Sum_probs=29.5
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCC
Q 006571 312 INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 356 (640)
Q Consensus 312 ~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~ 356 (640)
.+|.+|++||.-. +|......+.+.+.+. ..+..+|++++++.
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~-~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEP-PEHVKFLLATTDPQ 167 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSC-CTTEEEEEEESCGG
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcC-CCceEEEEEeCChH
Confidence 3578999999765 7877777666666432 12567788887753
No 449
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.07 E-value=0.034 Score=55.74 Aligned_cols=27 Identities=22% Similarity=0.352 Sum_probs=23.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
+++.+++|.|+.||||||+.+.|+..+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 577899999999999999999999644
No 450
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=93.03 E-value=0.047 Score=54.78 Aligned_cols=23 Identities=30% Similarity=0.577 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.|.|..
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999853
No 451
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.02 E-value=0.043 Score=51.51 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999974
No 452
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=92.97 E-value=0.048 Score=54.93 Aligned_cols=23 Identities=30% Similarity=0.588 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++++|++|+|||||+|.|.|..
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999853
No 453
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=92.95 E-value=0.055 Score=52.67 Aligned_cols=22 Identities=41% Similarity=0.745 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999973
No 454
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=92.89 E-value=0.049 Score=52.60 Aligned_cols=24 Identities=29% Similarity=0.506 Sum_probs=21.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 006571 183 GEVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 183 Ge~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
+.+++|+|++||||||+.+.|+..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~ 26 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASE 26 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 457899999999999999999964
No 455
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=92.88 E-value=0.056 Score=52.67 Aligned_cols=21 Identities=38% Similarity=0.719 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 006571 185 VLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G 205 (640)
++.|+||+||||+|.-+.|+-
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999999995
No 456
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.86 E-value=0.049 Score=52.63 Aligned_cols=23 Identities=39% Similarity=0.570 Sum_probs=20.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 006571 184 EVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
-.++|+|++|+|||||++-+++.
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 47899999999999999999864
No 457
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=92.78 E-value=0.025 Score=54.38 Aligned_cols=22 Identities=36% Similarity=0.576 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||++.|.+.
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999864
No 458
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=92.72 E-value=0.055 Score=52.41 Aligned_cols=23 Identities=35% Similarity=0.577 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.|.+..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999999753
No 459
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=92.68 E-value=0.051 Score=51.78 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||++.+.+.
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 4799999999999999999874
No 460
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=92.65 E-value=0.06 Score=56.25 Aligned_cols=24 Identities=42% Similarity=0.639 Sum_probs=21.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 006571 184 EVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.+++|+||+|||||||.+.|+..+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999744
No 461
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=92.64 E-value=0.058 Score=54.50 Aligned_cols=24 Identities=29% Similarity=0.589 Sum_probs=21.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 006571 184 EVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
-.++++|.+|+|||||+|.|.|..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~ 123 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKR 123 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTC
T ss_pred hheEEeCCCCCCHHHHHHHHhccc
Confidence 578999999999999999999854
No 462
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=92.62 E-value=0.036 Score=51.87 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=19.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHc
Q 006571 184 EVLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G 205 (640)
=.++|+|++|+|||||++.+.+
T Consensus 23 ~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3589999999999999999975
No 463
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=92.60 E-value=0.026 Score=53.37 Aligned_cols=22 Identities=23% Similarity=0.607 Sum_probs=4.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||++.|.+.
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5889999999999999999874
No 464
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=92.59 E-value=0.05 Score=59.33 Aligned_cols=53 Identities=9% Similarity=0.092 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCC-CCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCC
Q 006571 299 GERKRVCIGNEIIINPSLLFLDEP-TSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 355 (640)
Q Consensus 299 GqrqRv~IA~aL~~~P~iLlLDEP-TsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~ 355 (640)
.|.+-...+...+.+++++|+... +.++.... ..+.+.|+ +.++.+|++.+..
T Consensus 88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d-~~l~~~l~---~~~~pvilV~NK~ 141 (456)
T 4dcu_A 88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD-EEVAKILY---RTKKPVVLAVNKL 141 (456)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH-HHHHHHHT---TCCSCEEEEEECC
T ss_pred HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH-HHHHHHHH---HcCCCEEEEEECc
Confidence 366667777778888887665443 44566554 45555554 3577888777653
No 465
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=92.55 E-value=0.22 Score=57.72 Aligned_cols=23 Identities=35% Similarity=0.686 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.+.|.||+|+|||+|.+.|+..+
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999643
No 466
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=92.51 E-value=0.19 Score=55.36 Aligned_cols=71 Identities=15% Similarity=0.203 Sum_probs=52.9
Q ss_pred CCcCCHHHHHHHHHHHH--Hhh---------------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCC
Q 006571 293 VRGVSGGERKRVCIGNE--III---------------NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 355 (640)
Q Consensus 293 ~~~LSGGqrqRv~IA~a--L~~---------------~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~ 355 (640)
..++||||+|-.-+|.+ ++. .=.+++|||+ +-+|.......+++++++ |-=+|+++-.
T Consensus 377 ~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l---glQliiatP~- 451 (483)
T 3euj_A 377 SSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL---DMQLLIAAPE- 451 (483)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT---TCEEEEEESS-
T ss_pred cCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc---CCEEEEECcc-
Confidence 45799999997544443 322 1247999999 999999999999999865 7767777755
Q ss_pred CcHHHhccCEEEEEc
Q 006571 356 SSRLFHKFDKLILLG 370 (640)
Q Consensus 356 ~~~i~~~~D~i~vL~ 370 (640)
.+....|.++.+-
T Consensus 452 --~i~p~v~~~~~~~ 464 (483)
T 3euj_A 452 --NISPERGTTYKLV 464 (483)
T ss_dssp --SCCCSSSEEEECC
T ss_pred --hhhhccCceEEEE
Confidence 2456778888774
No 467
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=92.50 E-value=0.1 Score=49.65 Aligned_cols=35 Identities=20% Similarity=0.076 Sum_probs=27.2
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 006571 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G 205 (640)
+..++.. +---.|.-++|.|+||+|||||...|..
T Consensus 4 ~~~lHas-~v~v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 4 KQTWHAN-FLVIDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp CEEEESE-EEEETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred cEEEEEE-EEEECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 3455554 4445688999999999999999998875
No 468
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.49 E-value=0.37 Score=61.28 Aligned_cols=36 Identities=31% Similarity=0.399 Sum_probs=32.1
Q ss_pred cccceeceE--EEEeCCeEEEEECCCCCcHHHHHHHHH
Q 006571 169 EKDILNGIT--GSVNPGEVLALMGPSGSGKTTLLNLLS 204 (640)
Q Consensus 169 ~~~iL~~vs--~~i~~Ge~~aIvGpsGsGKSTLl~~L~ 204 (640)
..+.|+++. +-+++|+.+.|.||+|+|||||...+.
T Consensus 1065 Gi~~Ld~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~ 1102 (2050)
T 3cmu_A 1065 GSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 1102 (2050)
T ss_dssp SCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHH
T ss_pred CcHHHHHHhccCCcCCCcEEEEECCCCCCHHHHHHHHH
Confidence 346788888 589999999999999999999999887
No 469
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.48 E-value=0.02 Score=59.30 Aligned_cols=42 Identities=7% Similarity=0.135 Sum_probs=31.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCC
Q 006571 313 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 356 (640)
Q Consensus 313 ~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~ 356 (640)
++.++++|| ...|++..+..+.+.+.+... ...+|++++++.
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~-~~~~il~~~~~~ 174 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSG-VTRFCLICNYVT 174 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTT-TEEEEEEESCGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCC-CceEEEEeCchh
Confidence 567999999 788999888888888776432 345666776654
No 470
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=92.37 E-value=0.058 Score=51.51 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=20.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 006571 184 EVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
=.++|+|++|+|||||++.+.+.
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 46889999999999999999864
No 471
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=92.30 E-value=0.065 Score=51.69 Aligned_cols=22 Identities=36% Similarity=0.575 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||++.+.+.
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5889999999999999999874
No 472
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=92.24 E-value=0.062 Score=51.28 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||++.+.+.
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999864
No 473
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=92.15 E-value=0.02 Score=57.22 Aligned_cols=30 Identities=33% Similarity=0.701 Sum_probs=23.4
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 006571 175 GITGSVNPGEVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 175 ~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
++......| +.|.||+|+|||||.+.|+..
T Consensus 38 ~~~~~~~~~--vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 38 NLGAKIPKG--VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp HHSCCCCSC--CCCBCSSCSSHHHHHHHHHHH
T ss_pred HCCCCCCce--EEEECCCCCcHHHHHHHHHHH
Confidence 334444555 779999999999999999974
No 474
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=92.11 E-value=0.088 Score=54.70 Aligned_cols=25 Identities=44% Similarity=0.551 Sum_probs=21.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 183 GEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 183 Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
..+++|+||+|||||||...|+..+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 3578999999999999999999643
No 475
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=92.02 E-value=0.025 Score=66.30 Aligned_cols=32 Identities=25% Similarity=0.484 Sum_probs=28.4
Q ss_pred eEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 176 ITGSVNPGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 176 vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++.+.+|+.++|.||||+|||||.++|++.+
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHh
Confidence 46678899999999999999999999999843
No 476
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=91.79 E-value=0.088 Score=56.63 Aligned_cols=25 Identities=28% Similarity=0.533 Sum_probs=21.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 183 GEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 183 Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
-.+++|+||+|||||||.+.|+-.+
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHHHC
Confidence 3578999999999999999999643
No 477
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=91.53 E-value=0.083 Score=55.52 Aligned_cols=23 Identities=30% Similarity=0.560 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|.+|+|||||++.|.|..
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999854
No 478
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=91.53 E-value=0.095 Score=49.48 Aligned_cols=41 Identities=12% Similarity=0.212 Sum_probs=27.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCC
Q 006571 313 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 355 (640)
Q Consensus 313 ~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~ 355 (640)
++.+|++||. ..+++.....+.+.+.+.. .+..+|+++..+
T Consensus 102 ~~~vliiDe~-~~l~~~~~~~l~~~l~~~~-~~~~~i~~~~~~ 142 (226)
T 2chg_A 102 PFKIIFLDEA-DALTADAQAALRRTMEMYS-KSCRFILSCNYV 142 (226)
T ss_dssp SCEEEEEETG-GGSCHHHHHHHHHHHHHTT-TTEEEEEEESCG
T ss_pred CceEEEEeCh-hhcCHHHHHHHHHHHHhcC-CCCeEEEEeCCh
Confidence 6789999996 4567777666666665532 245566676654
No 479
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=91.47 E-value=0.1 Score=49.62 Aligned_cols=52 Identities=17% Similarity=0.282 Sum_probs=35.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCC---------cHHHhccCEEEEE
Q 006571 313 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS---------SRLFHKFDKLILL 369 (640)
Q Consensus 313 ~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~---------~~i~~~~D~i~vL 369 (640)
+++++++||.=- +|+ .+++.|+.+++.|..||++.++.. ..+...+|.|.-|
T Consensus 76 ~~dvviIDE~Q~-~~~----~~~~~l~~l~~~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l 136 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNP----SLFEVVKDLLDRGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKK 136 (184)
T ss_dssp TEEEEEECCGGG-SCT----THHHHHHHHHHTTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEEC
T ss_pred CCCEEEEECccc-CCH----HHHHHHHHHHHCCCCEEEEeeccccccCCccchHHHHHHhhheEEe
Confidence 578999999743 443 366677777777999999888533 2344456666444
No 480
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=91.42 E-value=0.11 Score=47.20 Aligned_cols=42 Identities=14% Similarity=0.147 Sum_probs=28.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCC
Q 006571 313 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 356 (640)
Q Consensus 313 ~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~ 356 (640)
+..+|++||. ..|++..+..+.+.|... .....+|+++..+.
T Consensus 76 ~~g~l~ldei-~~l~~~~q~~Ll~~l~~~-~~~~~~I~~t~~~~ 117 (145)
T 3n70_A 76 QGGTLVLSHP-EHLTREQQYHLVQLQSQE-HRPFRLIGIGDTSL 117 (145)
T ss_dssp TTSCEEEECG-GGSCHHHHHHHHHHHHSS-SCSSCEEEEESSCH
T ss_pred CCcEEEEcCh-HHCCHHHHHHHHHHHhhc-CCCEEEEEECCcCH
Confidence 4468999998 468888888888887322 12456777777643
No 481
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=91.40 E-value=0.1 Score=53.65 Aligned_cols=24 Identities=42% Similarity=0.704 Sum_probs=21.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 006571 183 GEVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 183 Ge~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
+-.++|+|++|+|||||++.+.+.
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 446899999999999999998875
No 482
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=91.35 E-value=0.00013 Score=74.15 Aligned_cols=73 Identities=18% Similarity=0.177 Sum_probs=53.6
Q ss_pred ccccccccCccCCcCCHHHHHHHHHHHHHhhCCCE--EEEeCCCCCCCHHHH--------HHHHHHHHHHHHCCCEEEEE
Q 006571 282 RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSL--LFLDEPTSGLDSTTA--------LRIVQMLQDIAEAGKTVVTT 351 (640)
Q Consensus 282 ~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~i--LlLDEPTsgLD~~s~--------~~i~~~L~~l~~~g~TvI~~ 351 (640)
+..++.++.+.++ +|+| ||++|+++++.+|++ +|+||+|+.||...+ ..+.+...++..+|+|.+.+
T Consensus 160 ~~l~~vi~qrl~~-~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~ 236 (261)
T 2eyu_A 160 FILQGIISQRLLP-KIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLED 236 (261)
T ss_dssp HHEEEEEEEEEEC-CSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEECHHHHHHHHHHTTSSCHHH
T ss_pred HHhhEEEEEEeEe-cCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHcCCCCHHH
Confidence 3445666544433 7888 899999999999999 999999999998743 22344444445569998888
Q ss_pred eCCCCc
Q 006571 352 IHQPSS 357 (640)
Q Consensus 352 tH~~~~ 357 (640)
.|+.+.
T Consensus 237 a~r~~~ 242 (261)
T 2eyu_A 237 AMEASP 242 (261)
T ss_dssp HHHHCS
T ss_pred HHHHhC
Confidence 887553
No 483
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=91.34 E-value=0.1 Score=52.95 Aligned_cols=27 Identities=33% Similarity=0.548 Sum_probs=22.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
+++.-+.|.||+|+|||||.+.++..+
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 355678999999999999999988643
No 484
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=91.30 E-value=0.11 Score=53.01 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=22.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 183 GEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 183 Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
+-.++|+|.+|+|||||+|.|.|..
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CceEEEEecCCCchHHHHHHHhcCc
Confidence 3468999999999999999999854
No 485
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=91.15 E-value=0.12 Score=54.41 Aligned_cols=26 Identities=27% Similarity=0.436 Sum_probs=22.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 182 PGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 182 ~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
..-+++|+|++|+|||||++.|++.+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 44689999999999999999998643
No 486
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=91.12 E-value=0.094 Score=56.80 Aligned_cols=22 Identities=36% Similarity=0.736 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||+|.|.|.
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
No 487
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=90.34 E-value=0.042 Score=52.18 Aligned_cols=22 Identities=27% Similarity=0.285 Sum_probs=19.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHc
Q 006571 184 EVLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G 205 (640)
=.++|+|++|+|||||++.+.+
T Consensus 31 ~ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 31 IKCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 3589999999999999998875
No 488
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=90.95 E-value=0.14 Score=49.71 Aligned_cols=25 Identities=44% Similarity=0.729 Sum_probs=22.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 183 GEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 183 Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
|.+++|=|+-||||||+++.|+..+
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L 26 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRL 26 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHH
Confidence 5688999999999999999999755
No 489
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=90.93 E-value=0.1 Score=56.02 Aligned_cols=23 Identities=17% Similarity=0.263 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|.+++|||||+|.|.|..
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 37899999999999999999853
No 490
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=90.89 E-value=0.12 Score=51.35 Aligned_cols=23 Identities=35% Similarity=0.580 Sum_probs=20.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 006571 184 EVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
-.+||+|++||||||+.+.|+-.
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHH
Confidence 35799999999999999999853
No 491
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=90.68 E-value=0.097 Score=57.37 Aligned_cols=25 Identities=36% Similarity=0.534 Sum_probs=21.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcC
Q 006571 182 PGEVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 182 ~Ge~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
+|=.++|+|++|+|||||+|.|.|.
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3445999999999999999999984
No 492
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=90.68 E-value=0.081 Score=50.94 Aligned_cols=22 Identities=45% Similarity=0.789 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHH-HHcC
Q 006571 185 VLALMGPSGSGKTTLLNL-LSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~-L~G~ 206 (640)
.++|+|++|+|||||++. +.|.
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 378999999999999998 5553
No 493
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=90.66 E-value=0.14 Score=51.37 Aligned_cols=25 Identities=36% Similarity=0.470 Sum_probs=21.9
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHc
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G 205 (640)
.+..-+.|.||+|+|||||.+.|+.
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHH
Confidence 4556788999999999999999996
No 494
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=90.47 E-value=0.14 Score=53.48 Aligned_cols=27 Identities=26% Similarity=0.450 Sum_probs=23.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.+|..+.|.||+|+|||||.+.++..+
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999999744
No 495
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=90.46 E-value=0.029 Score=53.20 Aligned_cols=22 Identities=41% Similarity=0.573 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||++.|.+.
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~ 56 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADD 56 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999874
No 496
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=90.35 E-value=0.15 Score=53.74 Aligned_cols=29 Identities=10% Similarity=0.259 Sum_probs=22.8
Q ss_pred cCCHHHHHHHHHHHHH---hh--CCCEEEEeCCC
Q 006571 295 GVSGGERKRVCIGNEI---II--NPSLLFLDEPT 323 (640)
Q Consensus 295 ~LSGGqrqRv~IA~aL---~~--~P~iLlLDEPT 323 (640)
.+|+||+||..|+++| +. +++++++|||+
T Consensus 296 ~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~ 329 (365)
T 1lw7_A 296 RSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPS 329 (365)
T ss_dssp -----CCSHHHHHHHHHHHHHGGGCCCEEEECSS
T ss_pred cCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 4899999999999999 77 89999999997
No 497
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=90.34 E-value=0.13 Score=52.59 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=21.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcC
Q 006571 182 PGEVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 182 ~Ge~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
+-..+.|.||+|+|||+|.+.|+..
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3346778899999999999999964
No 498
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=90.22 E-value=0.13 Score=54.63 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=22.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcC
Q 006571 182 PGEVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 182 ~Ge~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
++..++++|++|+|||||+|.|.|.
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhh
Confidence 4567999999999999999999985
No 499
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=90.20 E-value=0.12 Score=58.41 Aligned_cols=34 Identities=41% Similarity=0.632 Sum_probs=26.7
Q ss_pred cceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 171 ~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.+|.+++ .+--.++|+|++|+|||||+|.|.|..
T Consensus 29 ~~L~~i~---~~~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 29 KILSAIT---QPMVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp HHHHTCC---SBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred HHHHhcc---CCCcEEEEECCCCCCHHHHHHhHcCCC
Confidence 3566642 344678999999999999999999853
No 500
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=90.17 E-value=0.17 Score=52.31 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=21.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHc
Q 006571 183 GEVLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 183 Ge~~aIvGpsGsGKSTLl~~L~G 205 (640)
+.-+.|.||+|+|||+|+++|+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999999986
Done!