BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006573
(640 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PTM|A Chain A, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
Length = 198
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/178 (20%), Positives = 87/178 (48%), Gaps = 5/178 (2%)
Query: 308 SRTRKFRDTIQAASSFAQRNQLPIRLQDQMLAHLCLKFRTDSEGLQQQETLDSLPKAIRS 367
S +R++R+ ++ + Q +LP L++++L + ++R + ++ + ++IR
Sbjct: 5 SSSRQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYR--GKMFDERHIFREVSESIRQ 62
Query: 368 SISHYLFYSLMDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGA 427
+++Y L+ V F G ++ + ++V+ ++ E F P + VI + + + G
Sbjct: 63 DVANYNCRDLVASVPFFVGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGI 122
Query: 428 VDLLVLKNGVEQVVGEAKTGEICGEIGVLCYRPQLFTVRTKRLSQLLRLNRTTFLNIV 485
VD +++ +GV + G GEI +L ++ +V+ + L L+ F ++
Sbjct: 123 VD-IIMSDGV--IATSLSDGSYFGEICLLTRERRVASVKCETYCTLFSLSVQHFNQVL 177
>pdb|2QVS|B Chain B, Crystal Structure Of Type Iia Holoenzyme Of Camp-Dependent
Protein Kinase
Length = 310
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 60/136 (44%), Gaps = 2/136 (1%)
Query: 355 QETLDSLPKAI--RSSISHYLFYSLMDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVIL 412
+E D+ P+ + ++ + LF+ + + L Q++ M + E VI
Sbjct: 15 EEEEDNDPRVVHPKTDEQRCRLQEACKDILLFKNLDQEQLSQVLDAMFEKIVKTDEHVID 74
Query: 413 QNEAPTDFYILVTGAVDLLVLKNGVEQVVGEAKTGEICGEIGVLCYRPQLFTVRTKRLSQ 472
Q + +FY++ G D+LV K+ + VG+ GE+ ++ P+ T+
Sbjct: 75 QGDDGDNFYVIERGTYDILVTKDNQTRSVGQYDNRGSFGELALMYNTPRAATIIATSEGS 134
Query: 473 LLRLNRTTFLNIVQAN 488
L L+R TF I+ N
Sbjct: 135 LWGLDRVTFRRIIVKN 150
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 8/97 (8%)
Query: 373 LFYSLMDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLV 432
+F S ++ V LF+ + ++V + + + E +I Q E FYI+ +G V +L+
Sbjct: 157 MFESFIESVPLFKSLEMSERMKIVDVIGEKIYKDGERIIAQGEKADSFYIIESGEVSILI 216
Query: 433 L------KNGVEQVV--GEAKTGEICGEIGVLCYRPQ 461
KNG Q V G+ GE+ ++ +P+
Sbjct: 217 RSKTKSNKNGGNQEVEIAHCHKGQYFGELALVTNKPR 253
>pdb|3IDB|B Chain B, Crystal Structure Of (108-268)riib:c Holoenzyme Of Camp-
Dependent Protein Kinase
Length = 161
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 50/108 (46%)
Query: 381 VYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQV 440
+ LF+ + + + Q++ M + E VI Q + +FY++ G D+ V +GV +
Sbjct: 43 ILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRC 102
Query: 441 VGEAKTGEICGEIGVLCYRPQLFTVRTKRLSQLLRLNRTTFLNIVQAN 488
VG GE+ ++ P+ T+ L L+R TF I+ N
Sbjct: 103 VGNYDNRGSFGELALMYNTPRAATITATSPGALWGLDRVTFRRIIVKN 150
>pdb|3IDC|B Chain B, Crystal Structure Of (102-265)riib:c Holoenzyme Of Camp-
Dependent Protein Kinase
Length = 164
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 50/108 (46%)
Query: 381 VYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQV 440
+ LF+ + + + Q++ M + E VI Q + +FY++ G D+ V +GV +
Sbjct: 49 ILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRC 108
Query: 441 VGEAKTGEICGEIGVLCYRPQLFTVRTKRLSQLLRLNRTTFLNIVQAN 488
VG GE+ ++ P+ T+ L L+R TF I+ N
Sbjct: 109 VGNYDNRGSFGELALMYNTPRAATITATSPGALWGLDRVTFRRIIVKN 156
>pdb|3TNQ|A Chain A, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
Length = 416
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 57/127 (44%)
Query: 381 VYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQV 440
+ LF+ + + + Q++ M + E VI Q + +FY++ G D+ V +GV +
Sbjct: 150 ILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRC 209
Query: 441 VGEAKTGEICGEIGVLCYRPQLFTVRTKRLSQLLRLNRTTFLNIVQANVGDGTIIMNNLL 500
VG GE+ ++ P+ T+ L L+R TF I+ N + + +
Sbjct: 210 VGNYDNRGSFGELALMYNTPKAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYESFI 269
Query: 501 QHLKDLK 507
+ L LK
Sbjct: 270 ESLPFLK 276
>pdb|3TNP|B Chain B, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
pdb|3TNP|E Chain E, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
Length = 416
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 57/127 (44%)
Query: 381 VYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQV 440
+ LF+ + + + Q++ M + E VI Q + +FY++ G D+ V +GV +
Sbjct: 150 ILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRC 209
Query: 441 VGEAKTGEICGEIGVLCYRPQLFTVRTKRLSQLLRLNRTTFLNIVQANVGDGTIIMNNLL 500
VG GE+ ++ P+ T+ L L+R TF I+ N + + +
Sbjct: 210 VGNYDNRGSFGELALMYNTPKAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYESFI 269
Query: 501 QHLKDLK 507
+ L LK
Sbjct: 270 ESLPFLK 276
>pdb|2A9H|A Chain A, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
pdb|2A9H|B Chain B, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
pdb|2A9H|C Chain C, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
pdb|2A9H|D Chain D, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
Length = 155
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 18/88 (20%)
Query: 207 VTLFAVHCAGCFYYLLAARYHNPERTWIGASLGQNFLEKSLWIRYVTSMYWSITTLTTVG 266
V L V AG + +LA ER GA+L I Y +++WS+ T TTVG
Sbjct: 57 VLLVIVLLAGSYLAVLA------ERGAPGAAL----------ISYPDALWWSVETATTVG 100
Query: 267 YGDLHPVNTREMVFDILFMLFNLGLTAY 294
YGDL+PV ++ M+ G+T+Y
Sbjct: 101 YGDLYPVTLWGRCVAVVVMV--AGITSY 126
>pdb|1CX4|A Chain A, Crystal Structure Of A Deletion Mutant Of The Type Ii Beta
Regulatory Subunit Of Camp-Dependent Protein Kinase
Length = 305
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 50/108 (46%)
Query: 381 VYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQV 440
+ LF+ + + + Q++ M + E VI Q + +FY++ G D+ V +GV +
Sbjct: 39 ILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRC 98
Query: 441 VGEAKTGEICGEIGVLCYRPQLFTVRTKRLSQLLRLNRTTFLNIVQAN 488
VG GE+ ++ P+ T+ L L+R TF I+ N
Sbjct: 99 VGNYDNRGSFGELALMYNTPRAATITATSPGALWGLDRVTFRRIIVKN 146
>pdb|3OUF|A Chain A, Structure Of A K+ Selective Nak Mutant
pdb|3OUF|B Chain B, Structure Of A K+ Selective Nak Mutant
Length = 97
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 239 GQNFLEKSLWIRYVTSMYWSITTLTTVGYGDLHPVNTREMVFDILFMLFNLGL 291
G F +R + ++Y+S+ TLTTVGYGD P +F IL++ +GL
Sbjct: 21 GTIFYSTVEGLRPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGL 73
>pdb|4H33|A Chain A, Crystal Structure Of A Voltage-gated K+ Channel Pore
Module In A Closed State In Lipid Membranes, Tetragonal
Crystal Form
pdb|4H37|A Chain A, Crystal Structure Of A Voltage-gated K+ Channel Pore
Domain In A Closed State In Lipid Membranes
pdb|4H37|B Chain B, Crystal Structure Of A Voltage-gated K+ Channel Pore
Domain In A Closed State In Lipid Membranes
Length = 137
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 251 YVTSMYWSITTLTTVGYGDLHPVNTREMVFDILFMLFNLGLTAYLIGNMTNL 302
Y +++W+I T TTVGYGD+ PV + + MLF + + +TN
Sbjct: 44 YPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNF 95
>pdb|3OGC|C Chain C, Kcsa E71a Variant In Presence Of Na+
Length = 131
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 18/88 (20%)
Query: 207 VTLFAVHCAGCFYYLLAARYHNPERTWIGASLGQNFLEKSLWIRYVTSMYWSITTLTTVG 266
V L V AG + +LA ER GA L I Y +++WS+ T TTVG
Sbjct: 41 VLLVIVLLAGSYLAVLA------ERGAPGAQL----------ITYPRALWWSVATATTVG 84
Query: 267 YGDLHPVNTREMVFDILFMLFNLGLTAY 294
YGDL+PV + ++ M+ G+T++
Sbjct: 85 YGDLYPVTLWGRLVAVVVMV--AGITSF 110
>pdb|1LNQ|A Chain A, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|B Chain B, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|C Chain C, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|D Chain D, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|E Chain E, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|F Chain F, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|G Chain G, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|H Chain H, Crystal Structure Of Mthk At 3.3 A
Length = 336
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 236 ASLGQNFLEKSLWIRYVTSMYWSITTLTTVGYGDLHPVNTREMVFDILFMLFNLGLTAYL 295
+ G +F+E W S+YW+ T+ TVGYGD P M F + ++ +G A
Sbjct: 34 GTAGFHFIEGESW---TVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVA 90
Query: 296 IGNMTNLVVH 305
+ + +++
Sbjct: 91 VERLLEFLIN 100
>pdb|2P7T|C Chain C, Crystal Structure Of Kcsa Mutant
Length = 103
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 18/88 (20%)
Query: 207 VTLFAVHCAGCFYYLLAARYHNPERTWIGASLGQNFLEKSLWIRYVTSMYWSITTLTTVG 266
V L V AG + +LA ER GA L I Y +++WS++T TTVG
Sbjct: 13 VLLVIVLLAGSYLAVLA------ERGAPGAQL----------ITYPRALWWSVSTATTVG 56
Query: 267 YGDLHPVNTREMVFDILFMLFNLGLTAY 294
YGDL+PV ++ M+ G+T++
Sbjct: 57 YGDLYPVTLWGRCVAVVVMV--AGITSF 82
>pdb|1ORQ|C Chain C, X-Ray Structure Of A Voltage-Dependent Potassium Channel
In Complex With An Fab
Length = 223
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 254 SMYWSITTLTTVGYGDLHPVNTREMVFDILFMLFNLGLTAYLIGNMTNL 302
+++W++ T TTVGYGD+ P V I ML + LIG ++N+
Sbjct: 169 ALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNM 217
>pdb|2ATK|C Chain C, Structure Of A Mutant Kcsa K+ Channel
Length = 124
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 18/88 (20%)
Query: 207 VTLFAVHCAGCFYYLLAARYHNPERTWIGASLGQNFLEKSLWIRYVTSMYWSITTLTTVG 266
V L V AG + +LA ER GA L I Y +++WS+ T TTVG
Sbjct: 34 VLLVIVLLAGSYLAVLA------ERGAPGAQL----------ITYPRALWWSVATATTVG 77
Query: 267 YGDLHPVNTREMVFDILFMLFNLGLTAY 294
YGDL+PV ++ M+ G+T++
Sbjct: 78 YGDLYPVTLWGRCVAVVVMV--AGITSF 103
>pdb|2A0L|A Chain A, Crystal Structure Of Kvap-33h1 Fv Complex
pdb|2A0L|B Chain B, Crystal Structure Of Kvap-33h1 Fv Complex
Length = 241
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 254 SMYWSITTLTTVGYGDLHPVNTREMVFDILFMLFNLGLTAYLIGNMTNL 302
+++W++ T TTVGYGD+ P V I ML + LIG ++N+
Sbjct: 181 ALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNM 229
>pdb|4DIN|B Chain B, Novel Localization And Quaternary Structure Of The Pka Ri
Beta Holoenzyme
Length = 381
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 53/115 (46%), Gaps = 2/115 (1%)
Query: 373 LFYSLMDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLV 432
++ + KV + + + ++ F E +++Q E DFYI+ G +L
Sbjct: 245 MYEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQ 304
Query: 433 LKNGVEQVVGEAKTG--EICGEIGVLCYRPQLFTVRTKRLSQLLRLNRTTFLNIV 485
++ E+ V + G + GEI +L RP+ TV + + ++L+R F ++
Sbjct: 305 RRSPNEEYVEVGRLGPSDYFGEIALLLNRPRAATVVARGPLKCVKLDRPRFERVL 359
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Query: 408 EDVILQNEAPTDFYILVTGAVDLLVLKNGVEQVVGEAKTGEICGEIGVLCYRPQLFTVRT 467
E VI Q +FY++ G VD+ V NG + V G GE+ ++ P+ TV+
Sbjct: 162 ETVIQQGNEGDNFYVVDQGEVDVYV--NG--EWVTNISEGGSFGELALIYGTPRAATVKA 217
Query: 468 KRLSQLLRLNRTTFLNIVQANV 489
K +L ++R ++ I+ +
Sbjct: 218 KTDLKLWGIDRDSYRRILMGST 239
>pdb|3TET|A Chain A, Crystal Structure Of Nak2k Channel Y66f Mutant
pdb|3TET|B Chain B, Crystal Structure Of Nak2k Channel Y66f Mutant
Length = 97
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%)
Query: 239 GQNFLEKSLWIRYVTSMYWSITTLTTVGYGDLHPVNTREMVFDILFMLFNLGL 291
G F +R + ++Y+S+ TLTTVG+GD P +F IL++ +GL
Sbjct: 21 GTIFYSTVEGLRPIDALYFSVVTLTTVGFGDFSPQTDFGKIFTILYIFIGIGL 73
>pdb|3T4D|A Chain A, Crystal Structure Of Nak2k Channel Y55f Mutant
pdb|3T4D|B Chain B, Crystal Structure Of Nak2k Channel Y55f Mutant
Length = 97
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%)
Query: 239 GQNFLEKSLWIRYVTSMYWSITTLTTVGYGDLHPVNTREMVFDILFMLFNLGL 291
G F +R + ++++S+ TLTTVGYGD P +F IL++ +GL
Sbjct: 21 GTIFYSTVEGLRPIDALFFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGL 73
>pdb|1F6G|A Chain A, Potassium Channel (Kcsa) Full-Length Fold
pdb|1F6G|B Chain B, Potassium Channel (Kcsa) Full-Length Fold
pdb|1F6G|C Chain C, Potassium Channel (Kcsa) Full-Length Fold
pdb|1F6G|D Chain D, Potassium Channel (Kcsa) Full-Length Fold
Length = 160
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 18/88 (20%)
Query: 207 VTLFAVHCAGCFYYLLAARYHNPERTWIGASLGQNFLEKSLWIRYVTSMYWSITTLTTVG 266
V L V AG + +LA ER GA L I Y +++WS+ T TTVG
Sbjct: 34 VLLVIVLLAGSYLAVLA------ERGAPGAQL----------ITYPAALWWSVETATTVG 77
Query: 267 YGDLHPVNTREMVFDILFMLFNLGLTAY 294
YGDL+PV ++ M+ G+T++
Sbjct: 78 YGDLYPVTLWGRCVAVVVMV--AGITSF 103
>pdb|3PJS|K Chain K, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
pdb|3PJS|L Chain L, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
pdb|3PJS|M Chain M, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
pdb|3PJS|N Chain N, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
Length = 166
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 18/88 (20%)
Query: 207 VTLFAVHCAGCFYYLLAARYHNPERTWIGASLGQNFLEKSLWIRYVTSMYWSITTLTTVG 266
V L V AG + +LA ER GA L I Y +++WS+ T TTVG
Sbjct: 40 VLLVIVLLAGSYLAVLA------ERGAPGAQL----------ITYPRALWWSVETATTVG 83
Query: 267 YGDLHPVNTREMVFDILFMLFNLGLTAY 294
YGDL+PV + ++ M+ G+T++
Sbjct: 84 YGDLYPVTLWGRLVAVVVMV--AGITSF 109
>pdb|3EFF|K Chain K, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|L Chain L, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|M Chain M, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|N Chain N, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
Length = 139
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 18/88 (20%)
Query: 207 VTLFAVHCAGCFYYLLAARYHNPERTWIGASLGQNFLEKSLWIRYVTSMYWSITTLTTVG 266
V L V AG + +LA ER GA L I Y +++WS+ T TTVG
Sbjct: 13 VLLVIVLLAGSYLAVLA------ERGAPGAQL----------ITYPRALWWSVETATTVG 56
Query: 267 YGDLHPVNTREMVFDILFMLFNLGLTAY 294
YGDL+PV + ++ M+ G+T++
Sbjct: 57 YGDLYPVTLWGRLVAVVVMV--AGITSF 82
>pdb|1ZWI|C Chain C, Structure Of Mutant Kcsa Potassium Channel
Length = 103
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 18/88 (20%)
Query: 207 VTLFAVHCAGCFYYLLAARYHNPERTWIGASLGQNFLEKSLWIRYVTSMYWSITTLTTVG 266
V L V AG + +LA ER GA L I Y +++WS+ T TTVG
Sbjct: 13 VLLVIVLLAGSYLAVLA------ERGAPGAQL----------ITYPRALWWSVATATTVG 56
Query: 267 YGDLHPVNTREMVFDILFMLFNLGLTAY 294
YGDL+PV ++ M+ G+T++
Sbjct: 57 YGDLYPVTLWGRCVAVVVMV--AGITSF 82
>pdb|1JVM|A Chain A, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
pdb|1JVM|B Chain B, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
pdb|1JVM|C Chain C, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
pdb|1JVM|D Chain D, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
Length = 125
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 18/88 (20%)
Query: 207 VTLFAVHCAGCFYYLLAARYHNPERTWIGASLGQNFLEKSLWIRYVTSMYWSITTLTTVG 266
V L V AG + +LA ER GA L I Y +++WS+ T TTVG
Sbjct: 34 VLLVIVLLAGSYLAVLA------ERGAPGAQL----------ITYPRALWWSVETATTVG 77
Query: 267 YGDLHPVNTREMVFDILFMLFNLGLTAY 294
YGDL+PV ++ M+ G+T++
Sbjct: 78 YGDLYPVTLWGRCVAVVVMV--AGITSF 103
>pdb|2JK5|C Chain C, Potassium Channel Kcsa In Complex With Tetrabutylammonium
In High K
pdb|2W0F|C Chain C, Potassium Channel Kcsa-Fab Complex With Tetraoctylammonium
Length = 124
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 18/88 (20%)
Query: 207 VTLFAVHCAGCFYYLLAARYHNPERTWIGASLGQNFLEKSLWIRYVTSMYWSITTLTTVG 266
V L V AG + +LA ER GA L I Y +++WS+ T TTVG
Sbjct: 34 VLLVIVLLAGSYLAVLA------ERGAPGAQL----------ITYPRALWWSVETATTVG 77
Query: 267 YGDLHPVNTREMVFDILFMLFNLGLTAY 294
YGDL+PV ++ M+ G+T++
Sbjct: 78 YGDLYPVTLWGRCVAVVVMV--AGITSF 103
>pdb|1K4D|C Chain C, Potassium Channel Kcsa-Fab Complex In Low Concentration Of
K+
pdb|1K4C|C Chain C, Potassium Channel Kcsa-Fab Complex In High Concentration
Of K+
pdb|1R3I|C Chain C, Potassium Channel Kcsa-Fab Complex In Rb+
pdb|1R3J|C Chain C, Potassium Channel Kcsa-Fab Complex In High Concentration
Of Tl+
pdb|1R3K|C Chain C, Potassium Channel Kcsa-Fab Complex In Low Concentration Of
Tl+
pdb|1R3L|C Chain C, Potassium Channel Kcsa-Fab Complex In Cs+
pdb|2BOB|C Chain C, Potassium Channel Kcsa-Fab Complex In Thallium With
Tetrabutylammonium (Tba)
pdb|2BOC|C Chain C, Potassium Channel Kcsa-Fab Complex In Thallium With
Tetraethylarsonium (Teas)
pdb|2HVJ|C Chain C, Crystal Structure Of Kcsa-fab-tba Complex In Low K+
pdb|2HVK|C Chain C, Crystal Structure Of The Kcsa-Fab-Tba Complex In High K+
pdb|2ITC|C Chain C, Potassium Channel Kcsa-Fab Complex In Sodium Chloride
pdb|2ITD|C Chain C, Potassium Channel Kcsa-Fab Complex In Barium Chloride
pdb|3GB7|C Chain C, Potassium Channel Kcsa-Fab Complex In Li+
pdb|3IGA|C Chain C, Potassium Channel Kcsa-Fab Complex In Li+ And K+
Length = 124
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 18/88 (20%)
Query: 207 VTLFAVHCAGCFYYLLAARYHNPERTWIGASLGQNFLEKSLWIRYVTSMYWSITTLTTVG 266
V L V AG + +LA ER GA L I Y +++WS+ T TTVG
Sbjct: 34 VLLVIVLLAGSYLAVLA------ERGAPGAQL----------ITYPRALWWSVETATTVG 77
Query: 267 YGDLHPVNTREMVFDILFMLFNLGLTAY 294
YGDL+PV ++ M+ G+T++
Sbjct: 78 YGDLYPVTLWGRCVAVVVMV--AGITSF 103
>pdb|2NLJ|C Chain C, Potassium Channel Kcsa(M96v)-Fab Complex In Kcl
Length = 124
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 34/67 (50%), Gaps = 16/67 (23%)
Query: 207 VTLFAVHCAGCFYYLLAARYHNPERTWIGASLGQNFLEKSLWIRYVTSMYWSITTLTTVG 266
V L V AG + +LA ER GA L I Y +++WS+ T TTVG
Sbjct: 34 VLLVIVLLAGSYLAVLA------ERGAPGAQL----------ITYPRALWWSVETATTVG 77
Query: 267 YGDLHPV 273
YGDL+PV
Sbjct: 78 YGDLYPV 84
>pdb|1J95|A Chain A, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
pdb|1J95|B Chain B, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
pdb|1J95|C Chain C, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
pdb|1J95|D Chain D, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
Length = 125
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 18/88 (20%)
Query: 207 VTLFAVHCAGCFYYLLAARYHNPERTWIGASLGQNFLEKSLWIRYVTSMYWSITTLTTVG 266
V L V AG + +LA ER GA L I Y +++WS+ T TTVG
Sbjct: 34 VLLVIVLLAGSYLAVLA------ERGAPGAQL----------ITYPRALWWSVETATTVG 77
Query: 267 YGDLHPVNTREMVFDILFMLFNLGLTAY 294
YGDL+PV ++ M+ G+T++
Sbjct: 78 YGDLYPVTLWGRCVAVVVMV--AGITSF 103
>pdb|3IFX|A Chain A, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|B Chain B, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|C Chain C, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|D Chain D, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
Length = 129
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 18/88 (20%)
Query: 207 VTLFAVHCAGCFYYLLAARYHNPERTWIGASLGQNFLEKSLWIRYVTSMYWSITTLTTVG 266
V L V AG + LA ER GA L I Y +++WS+ T TTVG
Sbjct: 34 VLLVIVLLAGSYLACLA------ERGAPGAQL----------ITYPRALWWSVETATTVG 77
Query: 267 YGDLHPVNTREMVFDILFMLFNLGLTAY 294
YGDL+PV + ++ M+ G+T++
Sbjct: 78 YGDLYPVTLWGRLVAVVVMV--AGITSF 103
>pdb|3OR6|C Chain C, On The Structural Basis Of Modal Gating Behavior In
K+channels - E71q
Length = 103
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 18/88 (20%)
Query: 207 VTLFAVHCAGCFYYLLAARYHNPERTWIGASLGQNFLEKSLWIRYVTSMYWSITTLTTVG 266
V L V AG + +LA ER GA L I Y +++WS+ T TTVG
Sbjct: 13 VLLVIVLLAGSYLAVLA------ERGAPGAQL----------ITYPRALWWSVQTATTVG 56
Query: 267 YGDLHPVNTREMVFDILFMLFNLGLTAY 294
YGDL+PV ++ M+ G+T++
Sbjct: 57 YGDLYPVTLWGRCVAVVVMV--AGITSF 82
>pdb|3OR7|C Chain C, On The Structural Basis Of Modal Gating Behavior In
K+channels - E71i
Length = 103
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 18/88 (20%)
Query: 207 VTLFAVHCAGCFYYLLAARYHNPERTWIGASLGQNFLEKSLWIRYVTSMYWSITTLTTVG 266
V L V AG + +LA ER GA L I Y +++WS+ T TTVG
Sbjct: 13 VLLVIVLLAGSYLAVLA------ERGAPGAQL----------ITYPRALWWSVITATTVG 56
Query: 267 YGDLHPVNTREMVFDILFMLFNLGLTAY 294
YGDL+PV ++ M+ G+T++
Sbjct: 57 YGDLYPVTLWGRCVAVVVMV--AGITSF 82
>pdb|3TCU|A Chain A, Crystal Structure Of Nak2k Channel D68e Mutant
pdb|3TCU|B Chain B, Crystal Structure Of Nak2k Channel D68e Mutant
Length = 97
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%)
Query: 239 GQNFLEKSLWIRYVTSMYWSITTLTTVGYGDLHPVNTREMVFDILFMLFNLGL 291
G F +R + ++Y+S+ TLTTVGYG+ P +F IL++ +GL
Sbjct: 21 GTIFYSTVEGLRPIDALYFSVVTLTTVGYGEFSPQTDFGKIFTILYIFIGIGL 73
>pdb|2HJF|C Chain C, Potassium Channel Kcsa-Fab Complex With Tetrabutylammonium
(Tba)
pdb|2DWD|C Chain C, Crystal Structure Of Kcsa-Fab-Tba Complex In Tl+
pdb|2DWE|C Chain C, Crystal Structure Of Kcsa-Fab-Tba Complex In Rb+
Length = 103
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 18/88 (20%)
Query: 207 VTLFAVHCAGCFYYLLAARYHNPERTWIGASLGQNFLEKSLWIRYVTSMYWSITTLTTVG 266
V L V AG + +LA ER GA L I Y +++WS+ T TTVG
Sbjct: 13 VLLVIVLLAGSYLAVLA------ERGAPGAQL----------ITYPRALWWSVETATTVG 56
Query: 267 YGDLHPVNTREMVFDILFMLFNLGLTAY 294
YGDL+PV ++ M+ G+T++
Sbjct: 57 YGDLYPVTLWGRCVAVVVMV--AGITSF 82
>pdb|3HPL|C Chain C, Kcsa E71h-F103a Mutant In The Closed State
Length = 124
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 34/67 (50%), Gaps = 16/67 (23%)
Query: 207 VTLFAVHCAGCFYYLLAARYHNPERTWIGASLGQNFLEKSLWIRYVTSMYWSITTLTTVG 266
V L V AG + +LA ER GA L I Y +++WS+ T TTVG
Sbjct: 34 VLLVIVLLAGSYLAVLA------ERGAPGAQL----------ITYPRALWWSVHTATTVG 77
Query: 267 YGDLHPV 273
YGDL+PV
Sbjct: 78 YGDLYPV 84
>pdb|1BL8|A Chain A, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|1BL8|B Chain B, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|1BL8|C Chain C, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|1BL8|D Chain D, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|2QTO|A Chain A, An Anisotropic Model For Potassium Channel Kcsa
pdb|2QTO|B Chain B, An Anisotropic Model For Potassium Channel Kcsa
pdb|2QTO|C Chain C, An Anisotropic Model For Potassium Channel Kcsa
pdb|2QTO|D Chain D, An Anisotropic Model For Potassium Channel Kcsa
Length = 97
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 18/88 (20%)
Query: 207 VTLFAVHCAGCFYYLLAARYHNPERTWIGASLGQNFLEKSLWIRYVTSMYWSITTLTTVG 266
V L V AG + +LA ER GA L I Y +++WS+ T TTVG
Sbjct: 12 VLLVIVLLAGSYLAVLA------ERGAPGAQL----------ITYPRALWWSVETATTVG 55
Query: 267 YGDLHPVNTREMVFDILFMLFNLGLTAY 294
YGDL+PV ++ M+ G+T++
Sbjct: 56 YGDLYPVTLWGRCVAVVVMV--AGITSF 81
>pdb|3RBZ|A Chain A, Mthk Channel, Ca2+-Bound
pdb|3RBZ|B Chain B, Mthk Channel, Ca2+-Bound
pdb|3RBZ|C Chain C, Mthk Channel, Ca2+-Bound
pdb|3RBZ|D Chain D, Mthk Channel, Ca2+-Bound
Length = 340
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 236 ASLGQNFLEKSLWIRYVTSMYWSITTLTTVGYGDLHPVNTREMVFDILFMLFNLGLTAYL 295
+ G +F+E W S+YW+ T+ TVGYGD P M F + ++ + A
Sbjct: 34 GTAGFHFIEGESW---TVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIATFAVA 90
Query: 296 IGNMTNLVVH 305
+ + +++
Sbjct: 91 VARLLTFLIN 100
>pdb|3T1C|A Chain A, Crystal Structure Of Nak Channel D66y Mutant
pdb|3T1C|B Chain B, Crystal Structure Of Nak Channel D66y Mutant
Length = 97
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%)
Query: 239 GQNFLEKSLWIRYVTSMYWSITTLTTVGYGDLHPVNTREMVFDILFMLFNLGL 291
G F +R + ++Y+S+ TLTTVGYG+ P +F IL++ +GL
Sbjct: 21 GTIFYSTVEGLRPIDALYFSVVTLTTVGYGNFSPQTDFGKIFTILYIFIGIGL 73
>pdb|3F5W|C Chain C, Kcsa Potassium Channel In The Open-Inactivated State With
32 A Opening At T112
pdb|3F7V|C Chain C, Kcsa Potassium Channel In The Open-Inactivated State With
23 A Opening At T112
pdb|3F7Y|C Chain C, Kcsa Potassium Channel In The Partially Open State With 17
A Opening At T112
pdb|3FB5|C Chain C, Kcsa Potassium Channel In The Partially Open State With
14.5 A Opening At T112
pdb|3FB6|C Chain C, Kcsa Potassium Channel In The Partially Open State With 16
A Opening At T112
pdb|3FB8|C Chain C, Kcsa Potassium Channel In The Open-Conductive State With
20 At T112 In The Presence Of Rb+ Ion
pdb|3FB7|C Chain C, Open Kcsa Potassium Channel In The Presence Of Rb+ Ion
Length = 104
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 18/88 (20%)
Query: 207 VTLFAVHCAGCFYYLLAARYHNPERTWIGASLGQNFLEKSLWIRYVTSMYWSITTLTTVG 266
V L V AG + +LA ER GA L I Y +++WS+ T TTVG
Sbjct: 14 VLLVIVLLAGSYLAVLA------ERGAPGAQL----------ITYPRALWWSVETATTVG 57
Query: 267 YGDLHPVNTREMVFDILFMLFNLGLTAY 294
YGDL+PV ++ M+ G+T++
Sbjct: 58 YGDLYPVTLWGRCVAVVVMV--AGITSF 83
>pdb|3T4Z|A Chain A, Crystal Structure Of Nak2k Channel Y55w Mutant
pdb|3T4Z|B Chain B, Crystal Structure Of Nak2k Channel Y55w Mutant
Length = 97
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%)
Query: 239 GQNFLEKSLWIRYVTSMYWSITTLTTVGYGDLHPVNTREMVFDILFMLFNLGL 291
G F +R + ++++S+ TLTTVGYGD P +F IL++ +GL
Sbjct: 21 GTIFYSTVEGLRPIDALWFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGL 73
>pdb|4HYO|A Chain A, Crystal Structure Of Mthk Pore
pdb|4HYO|B Chain B, Crystal Structure Of Mthk Pore
pdb|4HYO|C Chain C, Crystal Structure Of Mthk Pore
pdb|4HYO|D Chain D, Crystal Structure Of Mthk Pore
pdb|4HYO|E Chain E, Crystal Structure Of Mthk Pore
pdb|4HYO|F Chain F, Crystal Structure Of Mthk Pore
pdb|4HYO|G Chain G, Crystal Structure Of Mthk Pore
pdb|4HYO|H Chain H, Crystal Structure Of Mthk Pore
pdb|4HZ3|D Chain D, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|C Chain C, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|A Chain A, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|B Chain B, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|E Chain E, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|F Chain F, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|G Chain G, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|H Chain H, Mthk Pore Crystallized In Presence Of Tbsb
Length = 91
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 234 IGASLGQNFLEKSLWIRYVTSMYWSITTLTTVGYGDLHPVNTREMVFDILFMLFNLGLTA 293
I + G +F+E W S+YW+ T+ TVGYGD P M F ++ +G A
Sbjct: 22 IYGTAGFHFIEGESW---TVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFA 78
Query: 294 YLIGNMTNLVVH 305
+ + +++
Sbjct: 79 VAVERLLEFLIN 90
>pdb|3LDD|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In
100 Mm K+ And Further Soaked In 99 Mm Na+1 MM K+
Length = 82
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 234 IGASLGQNFLEKSLWIRYVTSMYWSITTLTTVGYGDLHPVNTREMVFDILFMLFNLGLTA 293
I + G +F+E W S+YW+ T+ TVGYGD P M F ++ +G A
Sbjct: 15 IYGTAGFHFIEGESW---TVSLYWTFVTIATVGYGDYSPRTPLGMYFTCTLIVLGIGTFA 71
Query: 294 YLIGNMTNLVV 304
+ + ++
Sbjct: 72 VAVERLLEFLI 82
>pdb|3R65|A Chain A, Mthk Channel Pore E92q Mutant
Length = 82
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 234 IGASLGQNFLEKSLWIRYVTSMYWSITTLTTVGYGDLHPVNTREMVFDILFMLFNLGLTA 293
I + G +F+E W S+YW+ T+ TVGYGD P M F ++ +G A
Sbjct: 15 IYGTAGFHFIEGESW---TVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFA 71
Query: 294 YLIGNMTNLVV 304
+ + ++
Sbjct: 72 VAVQRLLEFLI 82
>pdb|3LDC|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In
100 Mm K+
pdb|3LDE|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In
100 Mm K+ And Further Soaked In 100 Mm Na+
Length = 82
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 234 IGASLGQNFLEKSLWIRYVTSMYWSITTLTTVGYGDLHPVNTREMVFDILFMLFNLGLTA 293
I + G +F+E W S+YW+ T+ TVGYGD P M F ++ +G A
Sbjct: 15 IYGTAGFHFIEGESW---TVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFA 71
Query: 294 YLIGNMTNLVV 304
+ + ++
Sbjct: 72 VAVERLLEFLI 82
>pdb|3STZ|C Chain C, Kcsa Potassium Channel Mutant Y82c With Nitroxide Spin
Label
Length = 102
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 18/88 (20%)
Query: 207 VTLFAVHCAGCFYYLLAARYHNPERTWIGASLGQNFLEKSLWIRYVTSMYWSITTLTTVG 266
V L V AG + +LA ER GA L I Y +++WS+ T TTVG
Sbjct: 12 VLLVIVLLAGSYLAVLA------ERGAPGAQL----------ITYPRALWWSVETATTVG 55
Query: 267 YGDLHPVNTREMVFDILFMLFNLGLTAY 294
YGDL PV + ++ M+ G+T++
Sbjct: 56 YGDLCPVTLWGRLVAVVVMV--AGITSF 81
>pdb|3STL|C Chain C, Kcsa Potassium Channel Mutant Y82c With Cadmium Bound
Length = 103
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 18/88 (20%)
Query: 207 VTLFAVHCAGCFYYLLAARYHNPERTWIGASLGQNFLEKSLWIRYVTSMYWSITTLTTVG 266
V L V AG + +LA ER GA L I Y +++WS+ T TTVG
Sbjct: 13 VLLVIVLLAGSYLAVLA------ERGAPGAQL----------ITYPRALWWSVETATTVG 56
Query: 267 YGDLHPVNTREMVFDILFMLFNLGLTAY 294
YGDL PV + ++ M+ G+T++
Sbjct: 57 YGDLCPVTLWGRLVAVVVMV--AGITSF 82
>pdb|1S5H|C Chain C, Potassium Channel Kcsa-Fab Complex T75c Mutant In K+
Length = 124
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 18/88 (20%)
Query: 207 VTLFAVHCAGCFYYLLAARYHNPERTWIGASLGQNFLEKSLWIRYVTSMYWSITTLTTVG 266
V L V AG + +LA ER GA L I Y +++WS+ T T VG
Sbjct: 34 VLLVIVLLAGSYLAVLA------ERGAPGAQL----------ITYPRALWWSVETATCVG 77
Query: 267 YGDLHPVNTREMVFDILFMLFNLGLTAY 294
YGDL+PV + ++ M+ G+T++
Sbjct: 78 YGDLYPVTLWGRLVAVVVMV--AGITSF 103
>pdb|3T2M|A Chain A, Crystal Structure Of Nak Channel N68d Mutant
pdb|3T2M|B Chain B, Crystal Structure Of Nak Channel N68d Mutant
Length = 97
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 27/43 (62%)
Query: 249 IRYVTSMYWSITTLTTVGYGDLHPVNTREMVFDILFMLFNLGL 291
+R + ++Y+S+ TLTTVG GD P +F IL++ +GL
Sbjct: 31 LRPIDALYFSVVTLTTVGDGDFSPQTDFGKIFTILYIFIGIGL 73
>pdb|3OF1|A Chain A, Crystal Structure Of Bcy1, The Yeast Regulatory Subunit Of
Pka
Length = 246
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 394 QLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQVVGEAKTGEICGEI 453
+L + + + P E +I + + +FY++ GAVD V K G + V+ + K + GE+
Sbjct: 143 KLADALDTKIYQPGETIIREGDQGENFYLIEYGAVD--VSKKG-QGVINKLKDHDYFGEV 199
Query: 454 GVLCYRPQLFTVRTKRLSQLLRLNRTTF 481
+L P+ TV + +++ L ++ F
Sbjct: 200 ALLNDLPRQATVTATKRTKVATLGKSGF 227
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 57/126 (45%), Gaps = 4/126 (3%)
Query: 382 YLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQVV 441
+LF + +D +++ ++ + P +I Q + FY++ G VD V N V
Sbjct: 13 FLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYVNDNKVNS-- 70
Query: 442 GEAKTGEICGEIGVLCYRPQLFTVRTKRLSQLLRLNRTTFLNIVQANVGDGTIIMNNLLQ 501
+ G GE+ ++ P+ TV L L+R TF I+ + ++ ++LL+
Sbjct: 71 --SGPGSSFGELALMYNSPRAATVVATSDCLLWALDRLTFRKILLGSSFKKRLMYDDLLK 128
Query: 502 HLKDLK 507
+ LK
Sbjct: 129 SMPVLK 134
>pdb|3OUS|A Chain A, Mthk Channel Pore T59a Mutant
Length = 82
Score = 37.7 bits (86), Expect = 0.018, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 234 IGASLGQNFLEKSLWIRYVTSMYWSITTLTTVGYGDLHPVNTREMVFDILFMLFNLGLTA 293
I + G +F+E W S+YW+ T+ VGYGD P M F ++ +G A
Sbjct: 15 IYGTAGFHFIEGESW---TVSLYWTFVTIAAVGYGDYSPHTPLGMYFTCTLIVLGIGTFA 71
Query: 294 YLIGNMTNLVV 304
+ + ++
Sbjct: 72 VAVERLLEFLI 82
>pdb|3VOU|A Chain A, The Crystal Structure Of Nak-Navsulp Chimera Channel
pdb|3VOU|B Chain B, The Crystal Structure Of Nak-Navsulp Chimera Channel
Length = 148
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%)
Query: 232 TWIGASLGQNFLEKSLWIRYVTSMYWSITTLTTVGYGDLHPVNTREMVFDILFMLFNLGL 291
T++ + G F +R + ++Y+S+ TLTTVG G+ P VF IL++ +GL
Sbjct: 34 TFLTLTSGTIFYSTVEGLRPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGL 93
>pdb|2Q68|A Chain A, Crystal Structure Of Nak Channel D66a, S70e Double Mutants
pdb|2Q68|B Chain B, Crystal Structure Of Nak Channel D66a, S70e Double Mutants
Length = 114
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%)
Query: 239 GQNFLEKSLWIRYVTSMYWSITTLTTVGYGDLHPVNTREMVFDILFMLFNLGL 291
G F +R + ++Y+S+ TLTTVG G+ P +F IL++ +GL
Sbjct: 38 GTIFYSTVEGLRPIDALYFSVVTLTTVGAGNFEPQTDFGKIFTILYIFIGIGL 90
>pdb|2K1E|A Chain A, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2K1E|B Chain B, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2K1E|C Chain C, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2K1E|D Chain D, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|A Chain A, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|B Chain B, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|C Chain C, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|D Chain D, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
Length = 103
Score = 37.0 bits (84), Expect = 0.033, Method: Composition-based stats.
Identities = 14/25 (56%), Positives = 19/25 (76%)
Query: 249 IRYVTSMYWSITTLTTVGYGDLHPV 273
I Y +++WS+ T TTVGYGD +PV
Sbjct: 39 ISYPDAIWWSVETATTVGYGDRYPV 63
>pdb|3E97|A Chain A, Crystal Structure Of Transcriptional Regulator Of CrpFNR
Family (Yp_604437.1) From Deinococcus Geothermalis Dsm
11300 At 1.86 A Resolution
Length = 231
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 1/105 (0%)
Query: 378 MDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDL-LVLKNG 436
+ + LF+ V D + + + F P E V+ Q+ +++ TG V + V G
Sbjct: 8 LKRSPLFQNVPEDAXREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSLGG 67
Query: 437 VEQVVGEAKTGEICGEIGVLCYRPQLFTVRTKRLSQLLRLNRTTF 481
E+V+G+ + GE VL ++ + +VR + L L+R F
Sbjct: 68 RERVLGDIYAPGVVGETAVLAHQERSASVRALTPVRTLXLHREHF 112
>pdb|2Q67|A Chain A, Crystal Structure Of Nak Channel D66a Mutant
pdb|2Q67|B Chain B, Crystal Structure Of Nak Channel D66a Mutant
Length = 114
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%)
Query: 239 GQNFLEKSLWIRYVTSMYWSITTLTTVGYGDLHPVNTREMVFDILFMLFNLGL 291
G F +R + ++Y+S+ TLTTVG G+ P +F IL++ +GL
Sbjct: 38 GTIFYSTVEGLRPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGL 90
>pdb|2QCS|B Chain B, A Complex Structure Between The Catalytic And Regulatory
Subunit Of Protein Kinase A That Represents The
Inhibited State
Length = 291
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 23/115 (20%), Positives = 55/115 (47%), Gaps = 2/115 (1%)
Query: 373 LFYSLMDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLV 432
++ + KV + + + ++ F + +++Q E +F+I++ G+ +L
Sbjct: 154 MYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQ 213
Query: 433 LKNGVEQVVGEAKTG--EICGEIGVLCYRPQLFTVRTKRLSQLLRLNRTTFLNIV 485
++ E+ V + G + GEI +L RP+ TV + + ++L+R F ++
Sbjct: 214 RRSENEEFVEVGRLGPSDYFGEIALLMNRPKAATVVARGPLKCVKLDRPRFERVL 268
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 52/111 (46%), Gaps = 4/111 (3%)
Query: 378 MDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGV 437
++K LF + ++ + M F E VI Q + +FY++ G +D+ V N
Sbjct: 41 IEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV-NNEW 99
Query: 438 EQVVGEAKTGEICGEIGVLCYRPQLFTVRTKRLSQLLRLNRTTFLNIVQAN 488
VGE G GE+ ++ P+ TV+ K +L ++R ++ I+ +
Sbjct: 100 ATSVGE---GGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGS 147
>pdb|1NE4|A Chain A, Crystal Structure Of Rp-Camp Binding R1a Subunit Of Camp-
Dependent Protein Kinase
pdb|1NE6|A Chain A, Crystal Structure Of Sp-Camp Binding R1a Subunit Of Camp-
Dependent Protein Kinase
Length = 283
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 23/115 (20%), Positives = 55/115 (47%), Gaps = 2/115 (1%)
Query: 373 LFYSLMDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLV 432
++ + KV + + + ++ F + +++Q E +F+I++ G+ +L
Sbjct: 150 MYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQ 209
Query: 433 LKNGVEQVVGEAKTG--EICGEIGVLCYRPQLFTVRTKRLSQLLRLNRTTFLNIV 485
++ E+ V + G + GEI +L RP+ TV + + ++L+R F ++
Sbjct: 210 RRSENEEFVEVGRLGPSDYFGEIALLMNRPRAATVVARGPLKCVKLDRPRFERVL 264
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 52/111 (46%), Gaps = 4/111 (3%)
Query: 378 MDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGV 437
++K LF + ++ + M F E VI Q + +FY++ G +D+ V N
Sbjct: 37 IEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV-NNEW 95
Query: 438 EQVVGEAKTGEICGEIGVLCYRPQLFTVRTKRLSQLLRLNRTTFLNIVQAN 488
VGE G GE+ ++ P+ TV+ K +L ++R ++ I+ +
Sbjct: 96 ATSVGE---GGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGS 143
>pdb|1RL3|A Chain A, Crystal Structure Of Camp-free R1a Subunit Of Pka
pdb|1RL3|B Chain B, Crystal Structure Of Camp-free R1a Subunit Of Pka
pdb|1RGS|A Chain A, Regulatory Subunit Of Camp Dependent Protein Kinase
Length = 288
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 23/115 (20%), Positives = 55/115 (47%), Gaps = 2/115 (1%)
Query: 373 LFYSLMDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLV 432
++ + KV + + + ++ F + +++Q E +F+I++ G+ +L
Sbjct: 152 MYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQ 211
Query: 433 LKNGVEQVVGEAKTG--EICGEIGVLCYRPQLFTVRTKRLSQLLRLNRTTFLNIV 485
++ E+ V + G + GEI +L RP+ TV + + ++L+R F ++
Sbjct: 212 RRSENEEFVEVGRLGPSDYFGEIALLMNRPRAATVVARGPLKCVKLDRPRFERVL 266
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 52/111 (46%), Gaps = 4/111 (3%)
Query: 378 MDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGV 437
++K LF + ++ + M F E VI Q + +FY++ G +D+ V N
Sbjct: 39 IEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV-NNEW 97
Query: 438 EQVVGEAKTGEICGEIGVLCYRPQLFTVRTKRLSQLLRLNRTTFLNIVQAN 488
VGE G GE+ ++ P+ TV+ K +L ++R ++ I+ +
Sbjct: 98 ATSVGE---GGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGS 145
>pdb|2Q6A|A Chain A, Crystal Structure Of Nak Channel D66e Mutant
pdb|2Q6A|B Chain B, Crystal Structure Of Nak Channel D66e Mutant
Length = 114
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (62%)
Query: 249 IRYVTSMYWSITTLTTVGYGDLHPVNTREMVFDILFMLFNLGL 291
+R + ++Y+S+ TLTTVG G+ P +F IL++ +GL
Sbjct: 48 LRPIDALYFSVVTLTTVGEGNFSPQTDFGKIFTILYIFIGIGL 90
>pdb|2Q69|A Chain A, Crystal Structure Of Nak Channel D66n Mutant
pdb|2Q69|B Chain B, Crystal Structure Of Nak Channel D66n Mutant
Length = 114
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%)
Query: 239 GQNFLEKSLWIRYVTSMYWSITTLTTVGYGDLHPVNTREMVFDILFMLFNLGL 291
G F +R + ++Y+S+ TLTTVG G+ P +F IL++ +GL
Sbjct: 38 GTIFYSTVEGLRPIDALYFSVVTLTTVGNGNFSPQTDFGKIFTILYIFIGIGL 90
>pdb|3E83|A Chain A, Crystal Structure Of The The Open Nak Channel Pore
pdb|3E83|B Chain B, Crystal Structure Of The The Open Nak Channel Pore
pdb|3E86|A Chain A, High Resolution Crystal Structure Of The Open Nak Channel
Pore
pdb|3E86|B Chain B, High Resolution Crystal Structure Of The Open Nak Channel
Pore
pdb|3E89|A Chain A, Crystal Structure Of The The Open Nak Channel-Low Na+
Complex
pdb|3E89|B Chain B, Crystal Structure Of The The Open Nak Channel-Low Na+
Complex
pdb|3E8B|A Chain A, Crystal Structure Of The The Open Nak Channel- Rb+ Complex
pdb|3E8B|B Chain B, Crystal Structure Of The The Open Nak Channel- Rb+ Complex
pdb|3E8F|A Chain A, Crystal Structure Of The The Open Nak Channel- K+BA2+
pdb|3E8F|B Chain B, Crystal Structure Of The The Open Nak Channel- K+BA2+
pdb|3E8G|A Chain A, Crystal Structure Of The The Open Nak Channel-Na+CA2+
COMPLEX
pdb|3E8G|B Chain B, Crystal Structure Of The The Open Nak Channel-Na+CA2+
COMPLEX
pdb|3E8H|A Chain A, Crystal Structure Of The The Open Nak Channel-K+ Complex
pdb|3E8H|B Chain B, Crystal Structure Of The The Open Nak Channel-K+ Complex
Length = 96
Score = 35.8 bits (81), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%)
Query: 239 GQNFLEKSLWIRYVTSMYWSITTLTTVGYGDLHPVNTREMVFDILFMLFNLGL 291
G F +R + ++Y+S+ TLTTVG G+ P +F IL++ +GL
Sbjct: 20 GTIFYSTVEGLRPIDALYFSVVTLTTVGDGNFSPQTDFGKIFTILYIFIGIGL 72
>pdb|2IH1|C Chain C, Ion Selectivity In A Semi-Synthetic K+ Channel Locked In
The Conductive Conformation
pdb|2IH3|C Chain C, Ion Selectivity In A Semi-Synthetic K+ Channel Locked In
The Conductive Conformation
Length = 122
Score = 35.8 bits (81), Expect = 0.072, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 18/88 (20%)
Query: 207 VTLFAVHCAGCFYYLLAARYHNPERTWIGASLGQNFLEKSLWIRYVTSMYWSITTLTTVG 266
V L V AG + +LA ER GA L I Y +++W+ T TTV
Sbjct: 34 VLLVIVLLAGSYLAVLA------ERGAPGAQL----------ITYPRALWWACETATTVX 77
Query: 267 YGDLHPVNTREMVFDILFMLFNLGLTAY 294
YGDL+PV + ++ M+ G+T++
Sbjct: 78 YGDLYPVTLWGRLVAVVVMV--AGITSF 103
>pdb|2AHY|A Chain A, Na+ Complex Of The Nak Channel
pdb|2AHY|B Chain B, Na+ Complex Of The Nak Channel
pdb|2AHZ|A Chain A, K+ Complex Of The Nak Channel
pdb|2AHZ|B Chain B, K+ Complex Of The Nak Channel
Length = 110
Score = 35.8 bits (81), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%)
Query: 239 GQNFLEKSLWIRYVTSMYWSITTLTTVGYGDLHPVNTREMVFDILFMLFNLGL 291
G F +R + ++Y+S+ TLTTVG G+ P +F IL++ +GL
Sbjct: 38 GTIFYSTVEGLRPIDALYFSVVTLTTVGDGNFSPQTDFGKIFTILYIFIGIGL 90
>pdb|3UKM|A Chain A, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
pdb|3UKM|B Chain B, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
pdb|3UKM|C Chain C, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
pdb|3UKM|D Chain D, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
Length = 280
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 49/116 (42%), Gaps = 24/116 (20%)
Query: 204 LIFVTLFAVHCAGCFYYLLAARYHNPERTWIGASLGQNFLEKSLWIRYVTSMYWSITTLT 263
++ L CF+++ AA + E W NFLE S Y+ +L+
Sbjct: 171 IVHAVLLGFVTVSCFFFIPAAVFSVLEDDW-------NFLE---------SFYFCFISLS 214
Query: 264 TVGYGDLHPVNTREMVFDILFMLFNLGLTAY-LIGNMTNLVVHGT----SRTRKFR 314
T+G GD P F L+ +G+T Y L+G + LVV T +KFR
Sbjct: 215 TIGLGDYVPGEGYNQKFR---ELYKIGITCYLLLGLIAMLVVLETFCELHELKKFR 267
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 251 YVTSMYWSITTLTTVGYGDLHPVNTREMVFDILFMLFNLGLT-AYLIGNMTNLVVHGTSR 309
+ ++++++ T L+T GYG P++ F I++ + + T +L + + VH T R
Sbjct: 94 FTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRITVHVTRR 153
>pdb|1O3S|A Chain A, Protein-Dna Recognition And Dna Deformation Revealed In
Crystal Structures Of Cap-Dna Complexes
Length = 200
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 404 FPPKEDVILQNEAPTDFYILVTGAVDLLVL-KNGVEQVVGEAKTGEICGEIGVLCYRPQL 462
+P K +I Q E Y +V G+V +L+ + G E ++ G+ GE+G+ +
Sbjct: 16 YPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQER 75
Query: 463 FT-VRTKRLSQLLRLNRTTFLNIVQAN 488
VR K ++ ++ F ++Q N
Sbjct: 76 SAWVRAKTACEVAEISYKKFRQLIQVN 102
>pdb|1O3Q|A Chain A, Protein-Dna Recognition And Dna Deformation Revealed In
Crystal Structures Of Cap-Dna Complexes
pdb|1O3R|A Chain A, Protein-Dna Recognition And Dna Deformation Revealed In
Crystal Structures Of Cap-Dna Complexes
pdb|1O3T|A Chain A, Protein-Dna Recognition And Dna Deformation Revealed In
Crystal Structures Of Cap-Dna Complexes
pdb|1O3T|B Chain B, Protein-Dna Recognition And Dna Deformation Revealed In
Crystal Structures Of Cap-Dna Complexes
Length = 200
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 404 FPPKEDVILQNEAPTDFYILVTGAVDLLVL-KNGVEQVVGEAKTGEICGEIGVLCYRPQL 462
+P K +I Q E Y +V G+V +L+ + G E ++ G+ GE+G+ +
Sbjct: 16 YPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQER 75
Query: 463 FT-VRTKRLSQLLRLNRTTFLNIVQAN 488
VR K ++ ++ F ++Q N
Sbjct: 76 SAWVRAKTACEVAEISYKKFRQLIQVN 102
>pdb|1RUO|A Chain A, Catabolite Gene Activator Protein (Cap) MutantDNA COMPLEX
+ Adenosine-3',5'-Cyclic-Monophosphate
pdb|1RUO|B Chain B, Catabolite Gene Activator Protein (Cap) MutantDNA COMPLEX
+ Adenosine-3',5'-Cyclic-Monophosphate
Length = 209
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 404 FPPKEDVILQNEAPTDFYILVTGAVDLLVL-KNGVEQVVGEAKTGEICGEIGVLCYRPQL 462
+P K +I Q E Y +V G+V +L+ + G E ++ G+ GE+G+ +
Sbjct: 23 YPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQER 82
Query: 463 FT-VRTKRLSQLLRLNRTTFLNIVQAN 488
VR K ++ ++ F ++Q N
Sbjct: 83 SAWVRAKTACEVAEISYKKFRQLIQVN 109
>pdb|1I6X|A Chain A, Structure Of A Star Mutant Crp-Camp At 2.2 A
pdb|1I6X|B Chain B, Structure Of A Star Mutant Crp-Camp At 2.2 A
Length = 209
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 404 FPPKEDVILQNEAPTDFYILVTGAVDLLVL-KNGVEQVVGEAKTGEICGEIGVLCYRPQL 462
+P K +I Q E Y +V G+V +L+ + G E ++ G+ GE+G+ +
Sbjct: 23 YPSKSTLIHQGEKAETLYYIVKGSVAVLIKHEEGKEMILSYLNQGDFIGELGLFEEGQER 82
Query: 463 FT-VRTKRLSQLLRLNRTTFLNIVQAN 488
VR K ++ ++ F ++Q N
Sbjct: 83 SAWVRAKTACEVAEISYKKFRQLIQVN 109
>pdb|2WLL|A Chain A, Potassium Channel From Burkholderia Pseudomallei
Length = 333
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 18/22 (81%)
Query: 251 YVTSMYWSITTLTTVGYGDLHP 272
+V + ++S+ TL TVGYGD+HP
Sbjct: 97 FVGAFFFSVETLATVGYGDMHP 118
>pdb|3FWE|A Chain A, Crystal Structure Of The Apo D138l Cap Mutant
pdb|3FWE|B Chain B, Crystal Structure Of The Apo D138l Cap Mutant
Length = 210
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 404 FPPKEDVILQNEAPTDFYILVTGAVDLLVL-KNGVEQVVGEAKTGEICGEIGVLCYRPQL 462
+P K +I Q E Y +V G+V +L+ + G E ++ G+ GE+G+ +
Sbjct: 24 YPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQER 83
Query: 463 FT-VRTKRLSQLLRLNRTTFLNIVQAN 488
VR K ++ ++ F ++Q N
Sbjct: 84 SAWVRAKTACEVAEISYKKFRQLIQVN 110
>pdb|1RUN|A Chain A, Catabolite Gene Activator Protein (Cap)DNA COMPLEX +
Adenosine-3',5'-Cyclic-Monophosphate
pdb|1RUN|B Chain B, Catabolite Gene Activator Protein (Cap)DNA COMPLEX +
Adenosine-3',5'-Cyclic-Monophosphate
pdb|1J59|A Chain A, Catabolite Gene Activator Protein (Cap)DNA COMPLEX +
Adenosine-3',5'-Cyclic-Monophosphate
pdb|1J59|B Chain B, Catabolite Gene Activator Protein (Cap)DNA COMPLEX +
Adenosine-3',5'-Cyclic-Monophosphate
pdb|1LB2|A Chain A, Structure Of The E. Coli Alpha C-Terminal Domain Of Rna
Polymerase In Complex With Cap And Dna
pdb|1I5Z|A Chain A, Structure Of Crp-Camp At 1.9 A
pdb|1I5Z|B Chain B, Structure Of Crp-Camp At 1.9 A
pdb|1ZRC|A Chain A, 4 Crystal Structures Of Cap-Dna With All Base-Pair
Substitutions At Position 6, Cap-Icap38 Dna
pdb|1ZRC|B Chain B, 4 Crystal Structures Of Cap-Dna With All Base-Pair
Substitutions At Position 6, Cap-Icap38 Dna
pdb|1ZRD|A Chain A, 4 Crystal Structures Of Cap-dna With All Base-pair
Substitutions At Position 6, Cap-[6a;17t]icap38 Dna
pdb|1ZRD|B Chain B, 4 Crystal Structures Of Cap-dna With All Base-pair
Substitutions At Position 6, Cap-[6a;17t]icap38 Dna
pdb|1ZRE|A Chain A, 4 Crystal Structures Of Cap-Dna With All Base-Pair
Substitutions At Position 6, Cap-[6g;17c]icap38 Dna
pdb|1ZRE|B Chain B, 4 Crystal Structures Of Cap-Dna With All Base-Pair
Substitutions At Position 6, Cap-[6g;17c]icap38 Dna
pdb|1ZRF|A Chain A, 4 Crystal Structures Of Cap-Dna With All Base-Pair
Substitutions At Position 6, Cap-[6c;17g]icap38 Dna
pdb|1ZRF|B Chain B, 4 Crystal Structures Of Cap-Dna With All Base-Pair
Substitutions At Position 6, Cap-[6c;17g]icap38 Dna
pdb|2GZW|A Chain A, Crystal Structure Of The E.coli Crp-camp Complex
pdb|2GZW|B Chain B, Crystal Structure Of The E.coli Crp-camp Complex
pdb|2GZW|C Chain C, Crystal Structure Of The E.coli Crp-camp Complex
pdb|2GZW|D Chain D, Crystal Structure Of The E.coli Crp-camp Complex
pdb|2WC2|A Chain A, Nmr Structure Of Catabolite Activator Protein In The
Unliganded State
pdb|2WC2|B Chain B, Nmr Structure Of Catabolite Activator Protein In The
Unliganded State
pdb|3IYD|G Chain G, Three-Dimensional Em Structure Of An Intact
Activator-Dependent Transcription Initiation Complex
pdb|3IYD|H Chain H, Three-Dimensional Em Structure Of An Intact
Activator-Dependent Transcription Initiation Complex
pdb|3N4M|A Chain A, E. Coli Rna Polymerase Alpha Subunit C-Terminal Domain In
Complex With Cap And Dna
Length = 209
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 404 FPPKEDVILQNEAPTDFYILVTGAVDLLVL-KNGVEQVVGEAKTGEICGEIGVLCYRPQL 462
+P K +I Q E Y +V G+V +L+ + G E ++ G+ GE+G+ +
Sbjct: 23 YPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQER 82
Query: 463 FT-VRTKRLSQLLRLNRTTFLNIVQAN 488
VR K ++ ++ F ++Q N
Sbjct: 83 SAWVRAKTACEVAEISYKKFRQLIQVN 109
>pdb|1HW5|A Chain A, The CapCRP VARIANT T127LS128A
pdb|1HW5|B Chain B, The CapCRP VARIANT T127LS128A
Length = 210
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 404 FPPKEDVILQNEAPTDFYILVTGAVDLLVL-KNGVEQVVGEAKTGEICGEIGVLCYRPQL 462
+P K +I Q E Y +V G+V +L+ + G E ++ G+ GE+G+ +
Sbjct: 24 YPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQER 83
Query: 463 FT-VRTKRLSQLLRLNRTTFLNIVQAN 488
VR K ++ ++ F ++Q N
Sbjct: 84 SAWVRAKTACEVAEISYKKFRQLIQVN 110
>pdb|1P7B|A Chain A, Crystal Structure Of An Inward Rectifier Potassium Channel
pdb|1P7B|B Chain B, Crystal Structure Of An Inward Rectifier Potassium Channel
pdb|2WLL|B Chain B, Potassium Channel From Burkholderia Pseudomallei
Length = 333
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 18/22 (81%)
Query: 251 YVTSMYWSITTLTTVGYGDLHP 272
+V + ++S+ TL TVGYGD+HP
Sbjct: 97 FVGAFFFSVETLATVGYGDMHP 118
>pdb|3KCC|A Chain A, Crystal Structure Of D138l Mutant Of Catabolite Gene
Activator Protein
pdb|3KCC|B Chain B, Crystal Structure Of D138l Mutant Of Catabolite Gene
Activator Protein
Length = 260
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 404 FPPKEDVILQNEAPTDFYILVTGAVDLLVL-KNGVEQVVGEAKTGEICGEIGVLCYRPQL 462
+P K +I Q E Y +V G+V +L+ + G E ++ G+ GE+G+ +
Sbjct: 74 YPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQER 133
Query: 463 FT-VRTKRLSQLLRLNRTTFLNIVQAN 488
VR K ++ ++ F ++Q N
Sbjct: 134 SAWVRAKTACEVAEISYKKFRQLIQVN 160
>pdb|2CGP|A Chain A, Catabolite Gene Activator ProteinDNA COMPLEX,
ADENOSINE-3', 5'-Cyclic-Monophosphate
pdb|1G6N|A Chain A, 2.1 Angstrom Structure Of Cap-Camp
pdb|1G6N|B Chain B, 2.1 Angstrom Structure Of Cap-Camp
pdb|3HIF|A Chain A, The Crystal Structure Of Apo Wild Type Cap At 3.6 A
Resolution.
pdb|3HIF|B Chain B, The Crystal Structure Of Apo Wild Type Cap At 3.6 A
Resolution.
pdb|3HIF|C Chain C, The Crystal Structure Of Apo Wild Type Cap At 3.6 A
Resolution.
pdb|3HIF|D Chain D, The Crystal Structure Of Apo Wild Type Cap At 3.6 A
Resolution.
pdb|3HIF|E Chain E, The Crystal Structure Of Apo Wild Type Cap At 3.6 A
Resolution.
pdb|3HIF|F Chain F, The Crystal Structure Of Apo Wild Type Cap At 3.6 A
Resolution.
pdb|3RYP|A Chain A, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RYP|B Chain B, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RYR|A Chain A, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RYR|B Chain B, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
Length = 210
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 404 FPPKEDVILQNEAPTDFYILVTGAVDLLVL-KNGVEQVVGEAKTGEICGEIGVLCYRPQL 462
+P K +I Q E Y +V G+V +L+ + G E ++ G+ GE+G+ +
Sbjct: 24 YPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQER 83
Query: 463 FT-VRTKRLSQLLRLNRTTFLNIVQAN 488
VR K ++ ++ F ++Q N
Sbjct: 84 SAWVRAKTACEVAEISYKKFRQLIQVN 110
>pdb|1CGP|A Chain A, Catabolite Gene Activator Protein (Cap)DNA COMPLEX +
Adenosine-3',5'-Cyclic-Monophosphate
pdb|1CGP|B Chain B, Catabolite Gene Activator Protein (Cap)DNA COMPLEX +
Adenosine-3',5'-Cyclic-Monophosphate
Length = 205
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 404 FPPKEDVILQNEAPTDFYILVTGAVDLLVL-KNGVEQVVGEAKTGEICGEIGVLCYRPQL 462
+P K +I Q E Y +V G+V +L+ + G E ++ G+ GE+G+ +
Sbjct: 23 YPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQER 82
Query: 463 FT-VRTKRLSQLLRLNRTTFLNIVQAN 488
VR K ++ ++ F ++Q N
Sbjct: 83 SAWVRAKTACEVAEISYKKFRQLIQVN 109
>pdb|4GX5|A Chain A, Gsuk Channel
pdb|4GX5|B Chain B, Gsuk Channel
pdb|4GX5|C Chain C, Gsuk Channel
pdb|4GX5|D Chain D, Gsuk Channel
Length = 565
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 22/93 (23%)
Query: 178 LRRVSALFSRLEKDRNYNYFWVRCCKLIFVTLFAVHCAGCFYYLLAARYHNPERTWIGAS 237
++R SA F R +N + C F+ + + A F YL+ +H R +
Sbjct: 1 MQRGSAYFLRGRARQNLKVLLLYCA---FLLVMLLAYASIFRYLM---WHLEGRAY---- 50
Query: 238 LGQNFLEKSLWIRYVTSMYWSITTLTTVGYGDL 270
++ +YW+IT +TT+G+GD+
Sbjct: 51 ------------SFMAGIYWTITVMTTLGFGDI 71
>pdb|4GX0|A Chain A, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX0|B Chain B, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX0|C Chain C, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX0|D Chain D, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX1|A Chain A, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX1|B Chain B, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX1|C Chain C, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX1|D Chain D, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX2|A Chain A, Gsuk Channel Bound To Nad
pdb|4GX2|B Chain B, Gsuk Channel Bound To Nad
pdb|4GX2|C Chain C, Gsuk Channel Bound To Nad
pdb|4GX2|D Chain D, Gsuk Channel Bound To Nad
Length = 565
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 22/93 (23%)
Query: 178 LRRVSALFSRLEKDRNYNYFWVRCCKLIFVTLFAVHCAGCFYYLLAARYHNPERTWIGAS 237
++R SA F R +N + C F+ + + A F YL+ +H R +
Sbjct: 1 MQRGSAYFLRGRARQNLKVLLLYCA---FLLVMLLAYASIFRYLM---WHLEGRAY---- 50
Query: 238 LGQNFLEKSLWIRYVTSMYWSITTLTTVGYGDL 270
++ +YW+IT +TT+G+GD+
Sbjct: 51 ------------SFMAGIYWTITVMTTLGFGDI 71
>pdb|3BEH|A Chain A, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|B Chain B, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|C Chain C, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|D Chain D, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|2ZD9|A Chain A, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|B Chain B, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|C Chain C, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|D Chain D, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
Length = 355
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 254 SMYWSITTLTTVGYGDLHPVNTREMVFDILFMLFNLGL 291
+M+W++ TL+T GYGD P + V M+ +G+
Sbjct: 165 AMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGI 202
>pdb|3FHI|B Chain B, Crystal Structure Of A Complex Between The Catalytic And
Regulatory (Ri{alpha}) Subunits Of Pka
pdb|3IIA|A Chain A, Crystal Structure Of Apo (91-244) Ria Subunit Of
Camp-Dependent Protein Kinase
pdb|3PLQ|A Chain A, Crystal Structure Of Pka Type I Regulatory Subunit Bound
With Rp-8-Br- Camps
pdb|3PNA|A Chain A, Crystal Structure Of Camp Bound (91-244)ria Subunit Of
Camp-Dependent Protein Kinase
pdb|3PNA|B Chain B, Crystal Structure Of Camp Bound (91-244)ria Subunit Of
Camp-Dependent Protein Kinase
Length = 154
Score = 32.7 bits (73), Expect = 0.60, Method: Composition-based stats.
Identities = 28/111 (25%), Positives = 52/111 (46%), Gaps = 4/111 (3%)
Query: 378 MDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGV 437
++K LF + ++ + M F E VI Q + +FY++ G +D+ V N
Sbjct: 40 IEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV-NNEW 98
Query: 438 EQVVGEAKTGEICGEIGVLCYRPQLFTVRTKRLSQLLRLNRTTFLNIVQAN 488
VGE G GE+ ++ P+ TV+ K +L ++R ++ I+ +
Sbjct: 99 ATSVGE---GGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGS 146
>pdb|3PVB|B Chain B, Crystal Structure Of (73-244)ria:c Holoenzyme Of
Camp-Dependent Protein Kinase
Length = 160
Score = 32.7 bits (73), Expect = 0.60, Method: Composition-based stats.
Identities = 28/111 (25%), Positives = 52/111 (46%), Gaps = 4/111 (3%)
Query: 378 MDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGV 437
++K LF + ++ + M F E VI Q + +FY++ G +D+ V N
Sbjct: 47 IEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV-NNEW 105
Query: 438 EQVVGEAKTGEICGEIGVLCYRPQLFTVRTKRLSQLLRLNRTTFLNIVQAN 488
VGE G GE+ ++ P+ TV+ K +L ++R ++ I+ +
Sbjct: 106 ATSVGE---GGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGS 153
>pdb|3QOP|A Chain A, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3QOP|B Chain B, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RDI|A Chain A, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RDI|B Chain B, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3ROU|A Chain A, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3ROU|B Chain B, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RPQ|A Chain A, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RPQ|B Chain B, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
Length = 210
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 404 FPPKEDVILQNEAPTDFYILVTGAVDLLVL-KNGVEQVVGEAKTGEICGEIGVLCYRPQL 462
+P K +I Q E Y +V G+V +L+ + G E ++ G+ GE+G+ +
Sbjct: 24 YPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILFYLNQGDFIGELGLFEEGQER 83
Query: 463 FT-VRTKRLSQLLRLNRTTFLNIVQAN 488
VR K ++ ++ F ++Q N
Sbjct: 84 SAWVRAKTACEVAEISYKKFRQLIQVN 110
>pdb|2QKS|A Chain A, Crystal Structure Of A Kir3.1-Prokaryotic Kir Channel
Chimera
pdb|2QKS|B Chain B, Crystal Structure Of A Kir3.1-Prokaryotic Kir Channel
Chimera
Length = 321
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 254 SMYWSITTLTTVGYGDLHP 272
+ ++S+ TL TVGYGD+HP
Sbjct: 82 AFFFSVETLATVGYGDMHP 100
>pdb|3I59|A Chain A, Crystal Structure Of Mtbcrp In Complex With N6-Camp
Length = 249
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 44/99 (44%), Gaps = 5/99 (5%)
Query: 374 FYSLMDKVY----LFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVD 429
F S MD++ +F+GV + L +++ FP V + E YI+++G V
Sbjct: 22 FQSHMDEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVK 81
Query: 430 L-LVLKNGVEQVVGEAKTGEICGEIGVLCYRPQLFTVRT 467
+ +G E ++ ++ GE+ + P+ + T
Sbjct: 82 IGRRAPDGRENLLTIXGPSDMFGELSIFDPGPRTSSATT 120
>pdb|2VGI|A Chain A, Human Erythrocyte Pyruvate Kinase: R486w Mutant
pdb|2VGI|B Chain B, Human Erythrocyte Pyruvate Kinase: R486w Mutant
pdb|2VGI|C Chain C, Human Erythrocyte Pyruvate Kinase: R486w Mutant
pdb|2VGI|D Chain D, Human Erythrocyte Pyruvate Kinase: R486w Mutant
Length = 528
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 316 TIQAASSFAQRNQLPIRLQDQMLAHLCLKFRTDSEGLQQQET 357
T + ++F Q+ QLP + D L HLCL DSE + + T
Sbjct: 2 TQELGTAFFQQQQLPAAMADTFLEHLCL-LDIDSEPVAARST 42
>pdb|2VGF|A Chain A, Human Erythrocyte Pyruvate Kinase: T384m Mutant
pdb|2VGF|B Chain B, Human Erythrocyte Pyruvate Kinase: T384m Mutant
pdb|2VGF|C Chain C, Human Erythrocyte Pyruvate Kinase: T384m Mutant
pdb|2VGF|D Chain D, Human Erythrocyte Pyruvate Kinase: T384m Mutant
Length = 528
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 316 TIQAASSFAQRNQLPIRLQDQMLAHLCLKFRTDSEGLQQQET 357
T + ++F Q+ QLP + D L HLCL DSE + + T
Sbjct: 2 TQELGTAFFQQQQLPAAMADTFLEHLCL-LDIDSEPVAARST 42
>pdb|2VGG|A Chain A, Human Erythrocyte Pyruvate Kinase: R479h Mutant
pdb|2VGG|B Chain B, Human Erythrocyte Pyruvate Kinase: R479h Mutant
pdb|2VGG|C Chain C, Human Erythrocyte Pyruvate Kinase: R479h Mutant
pdb|2VGG|D Chain D, Human Erythrocyte Pyruvate Kinase: R479h Mutant
Length = 528
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 316 TIQAASSFAQRNQLPIRLQDQMLAHLCLKFRTDSEGLQQQET 357
T + ++F Q+ QLP + D L HLCL DSE + + T
Sbjct: 2 TQELGTAFFQQQQLPAAMADTFLEHLCL-LDIDSEPVAARST 42
>pdb|2VGB|A Chain A, Human Erythrocyte Pyruvate Kinase
pdb|2VGB|B Chain B, Human Erythrocyte Pyruvate Kinase
pdb|2VGB|C Chain C, Human Erythrocyte Pyruvate Kinase
pdb|2VGB|D Chain D, Human Erythrocyte Pyruvate Kinase
Length = 528
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 316 TIQAASSFAQRNQLPIRLQDQMLAHLCLKFRTDSEGLQQQET 357
T + ++F Q+ QLP + D L HLCL DSE + + T
Sbjct: 2 TQELGTAFFQQQQLPAAMADTFLEHLCL-LDIDSEPVAARST 42
>pdb|4IP7|A Chain A, Structure Of The S12d Variant Of Human Liver Pyruvate
Kinase In Complex With Citrate And Fbp.
pdb|4IP7|B Chain B, Structure Of The S12d Variant Of Human Liver Pyruvate
Kinase In Complex With Citrate And Fbp.
pdb|4IP7|C Chain C, Structure Of The S12d Variant Of Human Liver Pyruvate
Kinase In Complex With Citrate And Fbp.
pdb|4IP7|D Chain D, Structure Of The S12d Variant Of Human Liver Pyruvate
Kinase In Complex With Citrate And Fbp
Length = 543
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 316 TIQAASSFAQRNQLPIRLQDQMLAHLCLKFRTDSEGLQQQET 357
T + ++F Q+ QLP + D L HLCL DSE + + T
Sbjct: 17 TQELGTAFFQQQQLPAAMADTFLEHLCL-LDIDSEPVAARST 57
>pdb|4IMA|A Chain A, The Structure Of C436m-hlpyk In Complex With
Citrate/mn/atp/fru-1,6-bp
pdb|4IMA|B Chain B, The Structure Of C436m-hlpyk In Complex With
Citrate/mn/atp/fru-1,6-bp
pdb|4IMA|C Chain C, The Structure Of C436m-hlpyk In Complex With
Citrate/mn/atp/fru-1,6-bp
pdb|4IMA|D Chain D, The Structure Of C436m-hlpyk In Complex With
Citrate/mn/atp/fru-1,6-bp
Length = 543
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 316 TIQAASSFAQRNQLPIRLQDQMLAHLCLKFRTDSEGLQQQET 357
T + ++F Q+ QLP + D L HLCL DSE + + T
Sbjct: 17 TQELGTAFFQQQQLPAAMADTFLEHLCL-LDIDSEPVAARST 57
>pdb|3LUT|B Chain B, A Structural Model For The Full-Length Shaker Potassium
Channel Kv1.2
Length = 499
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 16/21 (76%)
Query: 254 SMYWSITTLTTVGYGDLHPVN 274
+ +W++ ++TTVGYGD+ P
Sbjct: 364 AFWWAVVSMTTVGYGDMVPTT 384
>pdb|2A79|B Chain B, Mammalian Shaker Kv1.2 Potassium Channel- Beta Subunit
Complex
Length = 499
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 16/21 (76%)
Query: 254 SMYWSITTLTTVGYGDLHPVN 274
+ +W++ ++TTVGYGD+ P
Sbjct: 364 AFWWAVVSMTTVGYGDMVPTT 384
>pdb|3LNM|B Chain B, F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Channel
pdb|3LNM|D Chain D, F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Channel
Length = 514
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 16/19 (84%)
Query: 254 SMYWSITTLTTVGYGDLHP 272
+ +W++ ++TTVGYGD+ P
Sbjct: 379 AFWWAVVSMTTVGYGDMVP 397
>pdb|2R9R|B Chain B, Shaker Family Voltage Dependent Potassium Channel
(Kv1.2-Kv2.1 Paddle Chimera Channel) In Association With
Beta Subunit
pdb|2R9R|H Chain H, Shaker Family Voltage Dependent Potassium Channel
(Kv1.2-Kv2.1 Paddle Chimera Channel) In Association With
Beta Subunit
Length = 514
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 16/19 (84%)
Query: 254 SMYWSITTLTTVGYGDLHP 272
+ +W++ ++TTVGYGD+ P
Sbjct: 379 AFWWAVVSMTTVGYGDMVP 397
>pdb|3I54|A Chain A, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I54|B Chain B, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I54|C Chain C, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I54|D Chain D, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I59|B Chain B, Crystal Structure Of Mtbcrp In Complex With N6-Camp
Length = 249
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 44/99 (44%), Gaps = 5/99 (5%)
Query: 374 FYSLMDKVY----LFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVD 429
F S MD++ +F+GV + L +++ FP V + E YI+++G V
Sbjct: 22 FQSHMDEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVK 81
Query: 430 L-LVLKNGVEQVVGEAKTGEICGEIGVLCYRPQLFTVRT 467
+ +G E ++ ++ GE+ + P+ + T
Sbjct: 82 IGRRAPDGRENLLTIMGPSDMFGELSIFDPGPRTSSATT 120
>pdb|3GYD|A Chain A, Crystal Structure Of A Cyclic Nucleotide-Binding Domain
(Mfla_1926) From Methylobacillus Flagellatus Kt At 1.79
A Resolution
pdb|3GYD|B Chain B, Crystal Structure Of A Cyclic Nucleotide-Binding Domain
(Mfla_1926) From Methylobacillus Flagellatus Kt At 1.79
A Resolution
Length = 187
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 30/129 (23%), Positives = 58/129 (44%), Gaps = 3/129 (2%)
Query: 377 LMDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILV-TGAVDLLV-LK 434
+++K+ LF SN+ + L S + Y P++ +L P D+ +L+ TG V+++ +
Sbjct: 40 IVNKIKLFGDFSNEEVRYLCSYXQC-YAAPRDCQLLTEGDPGDYLLLILTGEVNVIKDIP 98
Query: 435 NGVEQVVGEAKTGEICGEIGVLCYRPQLFTVRTKRLSQLLRLNRTTFLNIVQANVGDGTI 494
N Q + + G I GE + P+ + + L+R ++ G
Sbjct: 99 NKGIQTIAKVGAGAIIGEXSXIDGXPRSASCVASLPTDFAVLSRDALYQLLANXPKLGNK 158
Query: 495 IMNNLLQHL 503
++ LLQ L
Sbjct: 159 VLIRLLQLL 167
>pdb|1RLV|A Chain A, Crystal Structure Of A Dimeric Archaeal Splicing
Endonuclease
pdb|1RLV|B Chain B, Crystal Structure Of A Dimeric Archaeal Splicing
Endonuclease
pdb|1R0V|A Chain A, Structure Determination Of The Dimeric Endonuclease In A
Pseudo-face- Centerd P21212 Space Group
pdb|1R0V|B Chain B, Structure Determination Of The Dimeric Endonuclease In A
Pseudo-face- Centerd P21212 Space Group
pdb|1R0V|C Chain C, Structure Determination Of The Dimeric Endonuclease In A
Pseudo-face- Centerd P21212 Space Group
pdb|1R0V|D Chain D, Structure Determination Of The Dimeric Endonuclease In A
Pseudo-face- Centerd P21212 Space Group
pdb|1R11|A Chain A, Structure Determination Of The Dimeric Endonuclease In A
Pseudo-Face- Centerd P21 Space Group
pdb|1R11|B Chain B, Structure Determination Of The Dimeric Endonuclease In A
Pseudo-Face- Centerd P21 Space Group
Length = 305
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 49/104 (47%), Gaps = 7/104 (6%)
Query: 50 VKLRRFIVSPYDRRYRVWETYLVL-LVIYTAWASPFEFGFLRKPQRPLSVIDNVVNGFFA 108
VK R + +DRRY V+ V+ T F+FG + R + +D++ + +
Sbjct: 206 VKRAREVERNFDRRYEVYRNLKERGFVVKTG----FKFGSEFRVYRKVESVDDLPHSEYL 261
Query: 109 VDIILTFFVAYLD--KATYLLVDCPKQIAWKYASSWLVFDVIST 150
VDI + + +D +A L + K++ + Y ++L F+ +
Sbjct: 262 VDIADSREIRLIDLARAVRLAQNVRKRMVFAYGKNYLCFERVKV 305
>pdb|2GJW|A Chain A, Rna Recognition And Cleavage By An Splicing Endonuclease
pdb|2GJW|B Chain B, Rna Recognition And Cleavage By An Splicing Endonuclease
pdb|2GJW|C Chain C, Rna Recognition And Cleavage By An Splicing Endonuclease
pdb|2GJW|D Chain D, Rna Recognition And Cleavage By An Splicing Endonuclease
Length = 313
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 49/104 (47%), Gaps = 7/104 (6%)
Query: 50 VKLRRFIVSPYDRRYRVWETYLVL-LVIYTAWASPFEFGFLRKPQRPLSVIDNVVNGFFA 108
VK R + +DRRY V+ V+ T F+FG + R + +D++ + +
Sbjct: 214 VKRAREVERNFDRRYEVYRNLKERGFVVKTG----FKFGSEFRVYRKVESVDDLPHSEYL 269
Query: 109 VDIILTFFVAYLD--KATYLLVDCPKQIAWKYASSWLVFDVIST 150
VDI + + +D +A L + K++ + Y ++L F+ +
Sbjct: 270 VDIADSREIRLIDLARAVRLAQNVRKRMVFAYGKNYLCFERVKV 313
>pdb|3P1Y|A Chain A, Crystal Structure Of The Chimeric Archaeoglobus Fulgidus
Rna Splicing Endonuclease With The Broadest Substrate
Specificity
pdb|3P1Y|B Chain B, Crystal Structure Of The Chimeric Archaeoglobus Fulgidus
Rna Splicing Endonuclease With The Broadest Substrate
Specificity
pdb|3P1Y|C Chain C, Crystal Structure Of The Chimeric Archaeoglobus Fulgidus
Rna Splicing Endonuclease With The Broadest Substrate
Specificity
pdb|3P1Y|D Chain D, Crystal Structure Of The Chimeric Archaeoglobus Fulgidus
Rna Splicing Endonuclease With The Broadest Substrate
Specificity
Length = 315
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 49/104 (47%), Gaps = 7/104 (6%)
Query: 50 VKLRRFIVSPYDRRYRVWETYLVL-LVIYTAWASPFEFGFLRKPQRPLSVIDNVVNGFFA 108
VK R + +DRRY V+ V+ T F+FG + R + +D++ + +
Sbjct: 216 VKRAREVERNFDRRYEVYRNLKERGFVVKTG----FKFGSEFRVYRKVESVDDLPHSEYL 271
Query: 109 VDIILTFFVAYLD--KATYLLVDCPKQIAWKYASSWLVFDVIST 150
VDI + + +D +A L + K++ + Y ++L F+ +
Sbjct: 272 VDIADSREIRLIDLARAVRLAQNVRKRMVFAYGKNYLCFERVKV 315
>pdb|3K03|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Dtpp,
K+ Complex
pdb|3K03|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Dtpp,
K+ Complex
pdb|3K04|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Dtpp,
Na+ Complex
pdb|3K04|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Dtpp,
Na+ Complex
Length = 96
Score = 29.6 bits (65), Expect = 4.8, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 249 IRYVTSMYWSITTLTTVGYGDLHPVNTR-EMVFDILFMLFNLGL 291
+R + ++Y+S+ TLTTV GD P T +F IL++ +GL
Sbjct: 31 LRPIDALYFSVVTLTTV--GDTPPPQTDFGKIFTILYIFIGIGL 72
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.140 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,828,279
Number of Sequences: 62578
Number of extensions: 699288
Number of successful extensions: 1750
Number of sequences better than 100.0: 102
Number of HSP's better than 100.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 1652
Number of HSP's gapped (non-prelim): 109
length of query: 640
length of database: 14,973,337
effective HSP length: 105
effective length of query: 535
effective length of database: 8,402,647
effective search space: 4495416145
effective search space used: 4495416145
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)