Query 006573
Match_columns 640
No_of_seqs 507 out of 4528
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 03:12:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006573.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006573hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3beh_A MLL3241 protein; transm 100.0 2.1E-42 7.3E-47 358.1 7.2 345 57-506 3-352 (355)
2 2ptm_A Hyperpolarization-activ 100.0 1.1E-31 3.7E-36 254.2 21.6 195 305-504 2-196 (198)
3 3bpz_A Potassium/sodium hyperp 100.0 5.6E-31 1.9E-35 250.1 22.4 197 305-507 3-199 (202)
4 3ukn_A Novel protein similar t 100.0 1.7E-31 5.7E-36 255.9 17.8 200 300-505 1-202 (212)
5 1orq_C Potassium channel; volt 99.9 3.3E-28 1.1E-32 234.0 10.1 207 66-305 9-220 (223)
6 2r9r_B Paddle chimera voltage 99.9 1.1E-27 3.7E-32 256.2 5.9 230 47-309 163-434 (514)
7 4f8a_A Potassium voltage-gated 99.8 1.8E-20 6.3E-25 170.3 14.4 142 354-499 5-148 (160)
8 2a9h_A Voltage-gated potassium 99.8 3.9E-20 1.3E-24 163.8 11.1 131 142-311 15-145 (155)
9 3gyd_A CNMP-BD protein, cyclic 99.8 9.6E-19 3.3E-23 163.3 15.8 139 367-505 30-173 (187)
10 3mdp_A Cyclic nucleotide-bindi 99.8 7.7E-19 2.6E-23 156.0 13.9 131 375-505 5-139 (142)
11 3dn7_A Cyclic nucleotide bindi 99.8 1.1E-18 3.7E-23 164.0 15.3 152 374-525 5-158 (194)
12 2pqq_A Putative transcriptiona 99.8 7.3E-19 2.5E-23 157.5 13.2 135 375-509 4-139 (149)
13 4ev0_A Transcription regulator 99.8 2.4E-18 8.2E-23 164.7 16.5 147 378-524 1-148 (216)
14 3idb_B CAMP-dependent protein 99.8 7E-19 2.4E-23 160.0 12.1 129 368-496 30-158 (161)
15 2z69_A DNR protein; beta barre 99.8 2.1E-18 7.3E-23 155.4 14.0 135 375-509 11-147 (154)
16 3ocp_A PRKG1 protein; serine/t 99.8 1E-18 3.4E-23 154.7 11.4 131 360-494 7-137 (139)
17 3fx3_A Cyclic nucleotide-bindi 99.8 2.4E-18 8.2E-23 167.2 14.2 151 373-523 8-159 (237)
18 3d0s_A Transcriptional regulat 99.8 2.1E-18 7.3E-23 166.4 13.6 150 375-524 5-155 (227)
19 3dv8_A Transcriptional regulat 99.8 7.7E-18 2.6E-22 161.6 16.1 149 376-524 3-154 (220)
20 1zyb_A Transcription regulator 99.8 7E-18 2.4E-22 163.4 14.5 150 374-523 16-169 (232)
21 3e97_A Transcriptional regulat 99.7 7.9E-18 2.7E-22 162.9 14.4 147 375-523 5-153 (231)
22 3dkw_A DNR protein; CRP-FNR, H 99.7 3.7E-18 1.3E-22 164.7 10.6 151 374-524 7-159 (227)
23 3iwz_A CAP-like, catabolite ac 99.7 2.3E-17 7.9E-22 159.5 16.0 150 375-524 10-166 (230)
24 2ih3_C Voltage-gated potassium 99.7 7.1E-18 2.4E-22 143.7 10.6 63 246-308 57-119 (122)
25 2gau_A Transcriptional regulat 99.7 1.3E-17 4.3E-22 161.6 13.7 145 380-524 14-159 (232)
26 1vp6_A CNBD, cyclic-nucleotide 99.7 1.9E-17 6.6E-22 146.2 12.7 127 374-506 9-135 (138)
27 3rvy_A ION transport protein; 99.7 4.2E-19 1.4E-23 177.1 2.1 219 48-310 19-246 (285)
28 4h33_A LMO2059 protein; bilaye 99.7 1E-17 3.5E-22 145.7 7.8 93 250-342 43-135 (137)
29 3ryp_A Catabolite gene activat 99.7 1E-16 3.6E-21 152.5 15.5 143 382-524 2-146 (210)
30 3pna_A CAMP-dependent protein 99.7 8E-17 2.7E-21 145.1 12.8 119 372-494 34-152 (154)
31 2oz6_A Virulence factor regula 99.7 1.7E-16 5.7E-21 150.7 15.6 137 387-523 1-142 (207)
32 2fmy_A COOA, carbon monoxide o 99.7 4.2E-17 1.4E-21 156.5 11.5 143 375-524 3-145 (220)
33 1wgp_A Probable cyclic nucleot 99.7 1.5E-17 5E-22 146.8 7.1 118 376-493 6-134 (137)
34 3shr_A CGMP-dependent protein 99.7 1.4E-16 4.9E-21 160.5 13.3 137 372-508 153-291 (299)
35 1ft9_A Carbon monoxide oxidati 99.7 1.1E-16 3.6E-21 153.9 11.4 141 377-524 1-141 (222)
36 1o5l_A Transcriptional regulat 99.7 1.4E-16 4.9E-21 151.9 10.9 146 380-525 3-150 (213)
37 3kcc_A Catabolite gene activat 99.7 5.6E-16 1.9E-20 152.6 15.3 140 385-524 55-196 (260)
38 3shr_A CGMP-dependent protein 99.7 2.3E-16 7.7E-21 159.0 12.5 141 357-501 20-160 (299)
39 4ava_A Lysine acetyltransferas 99.7 5.8E-16 2E-20 158.5 15.6 129 374-504 11-140 (333)
40 2d93_A RAP guanine nucleotide 99.7 3.2E-17 1.1E-21 144.0 5.3 125 363-491 3-129 (134)
41 3vou_A ION transport 2 domain 99.7 1.3E-15 4.4E-20 135.0 14.7 113 201-336 26-148 (148)
42 3e6c_C CPRK, cyclic nucleotide 99.6 7E-16 2.4E-20 151.1 12.3 145 377-524 10-155 (250)
43 3tnp_B CAMP-dependent protein 99.6 2E-15 6.8E-20 158.6 14.4 132 366-497 135-266 (416)
44 3eff_K Voltage-gated potassium 99.6 1.6E-15 5.4E-20 133.1 10.1 92 200-308 7-98 (139)
45 2qcs_B CAMP-dependent protein 99.6 4.9E-15 1.7E-19 148.6 15.0 131 371-505 34-164 (291)
46 3of1_A CAMP-dependent protein 99.6 2.3E-15 7.8E-20 146.9 12.2 128 374-505 5-132 (246)
47 3la7_A Global nitrogen regulat 99.6 9E-15 3.1E-19 142.4 14.8 135 389-523 30-170 (243)
48 2bgc_A PRFA; bacterial infecti 99.6 9.1E-15 3.1E-19 141.9 14.8 138 385-523 2-145 (238)
49 3of1_A CAMP-dependent protein 99.6 5.4E-15 1.8E-19 144.2 12.5 118 373-493 122-239 (246)
50 2qcs_B CAMP-dependent protein 99.6 9.6E-15 3.3E-19 146.4 14.5 129 373-501 154-284 (291)
51 4din_B CAMP-dependent protein 99.6 5.5E-15 1.9E-19 153.7 12.2 131 371-505 125-255 (381)
52 1o7f_A CAMP-dependent RAP1 gua 99.6 1.7E-15 5.9E-20 162.7 8.1 142 361-503 27-171 (469)
53 4gpm_A Engineered protein OR26 99.6 2.2E-15 7.6E-20 137.6 7.2 107 525-640 33-148 (169)
54 3tnp_B CAMP-dependent protein 99.6 3.2E-15 1.1E-19 157.1 9.4 134 373-506 264-404 (416)
55 4gpm_A Engineered protein OR26 99.6 9.8E-16 3.3E-20 139.9 4.6 99 533-640 8-115 (169)
56 4din_B CAMP-dependent protein 99.6 9.4E-15 3.2E-19 151.9 12.2 132 372-503 244-377 (381)
57 2k1e_A Water soluble analogue 99.6 3.2E-15 1.1E-19 123.3 6.0 92 200-308 7-98 (103)
58 1d9s_A Cyclin-dependent kinase 99.5 9.4E-15 3.2E-19 128.4 6.1 103 527-639 10-122 (136)
59 2q67_A Potassium channel prote 99.5 1.3E-13 4.4E-18 115.5 12.3 62 250-311 49-110 (114)
60 1o7f_A CAMP-dependent RAP1 gua 99.5 6.1E-14 2.1E-18 150.6 12.5 124 372-498 333-458 (469)
61 3b02_A Transcriptional regulat 99.5 1.1E-13 3.8E-18 129.7 10.9 115 402-523 2-117 (195)
62 3c5r_A BARD-1, BRCA1-associate 99.5 2.1E-14 7.3E-19 126.3 5.3 102 527-637 8-118 (137)
63 3aaa_C Myotrophin, protein V-1 99.5 1.8E-14 6.2E-19 124.1 4.2 98 530-636 8-114 (123)
64 2jab_A H10-2-G3; HER2, darpin, 99.5 1.5E-14 5E-19 127.2 3.6 102 529-639 14-124 (136)
65 1bi7_B P16INK4A, MTS1, multipl 99.5 2.8E-14 9.6E-19 128.6 5.4 95 531-635 14-118 (156)
66 4f7z_A RAP guanine nucleotide 99.5 1.5E-13 5.1E-18 160.9 12.8 128 365-493 31-161 (999)
67 3v30_A DNA-binding protein rfx 99.5 5.8E-14 2E-18 128.7 6.6 109 522-639 29-146 (172)
68 4b93_B Ankyrin repeat domain-c 99.5 4.3E-14 1.5E-18 139.7 6.1 103 526-637 116-227 (269)
69 3f6q_A Integrin-linked protein 99.5 5.8E-14 2E-18 129.7 6.5 106 523-637 33-147 (179)
70 3twr_A Tankyrase-2; ankyrin re 99.4 9.5E-14 3.2E-18 126.3 7.8 101 527-636 40-149 (165)
71 3cf6_E RAP guanine nucleotide 99.4 3.1E-13 1.1E-17 149.9 12.3 134 356-493 13-148 (694)
72 1awc_B Protein (GA binding pro 99.4 5.1E-14 1.8E-18 126.4 4.7 105 527-640 32-145 (153)
73 3ldc_A Calcium-gated potassium 99.4 8.9E-13 3.1E-17 103.3 10.1 54 250-303 28-81 (82)
74 2y1l_E Darpin-8.4; hydrolase-i 99.4 2.2E-13 7.6E-18 124.5 7.1 105 526-639 44-157 (169)
75 3ouf_A Potassium channel prote 99.4 1.3E-12 4.3E-17 106.0 10.5 82 201-305 6-87 (97)
76 2zcw_A TTHA1359, transcription 99.4 6E-13 2E-17 125.5 9.2 121 396-524 2-125 (202)
77 2l6b_A NR1C; ankyrin, consensu 99.4 1.4E-13 4.8E-18 116.9 4.3 97 526-631 6-111 (115)
78 3v31_A Ankyrin repeat family A 99.4 2E-13 6.8E-18 124.5 5.4 106 525-639 32-146 (167)
79 2rfm_A Putative ankyrin repeat 99.4 2E-13 6.8E-18 127.6 5.3 106 526-640 65-179 (192)
80 1n0q_A 3ANK, 3 ankyrin repeats 99.4 1.7E-13 5.9E-18 111.5 3.8 76 530-638 3-78 (93)
81 1bd8_A P19INK4D CDK4/6 inhibit 99.4 4.6E-13 1.6E-17 120.4 6.9 104 526-640 33-145 (156)
82 1ihb_A P18-INK4C(INK6), cyclin 99.4 2E-13 6.7E-18 123.7 4.2 105 526-640 35-149 (162)
83 1sw6_A Regulatory protein SWI6 99.4 2.2E-13 7.4E-18 138.9 5.0 114 525-638 127-326 (327)
84 4dxw_A Navrh, ION transport pr 99.4 6.6E-13 2.2E-17 127.6 8.1 208 65-307 12-227 (229)
85 3v31_A Ankyrin repeat family A 99.4 2.1E-13 7.3E-18 124.2 4.1 102 529-639 3-113 (167)
86 3t8k_A Uncharacterized protein 99.4 1.5E-13 5.1E-18 127.6 3.0 109 529-640 38-166 (186)
87 2y1l_E Darpin-8.4; hydrolase-i 99.4 2.9E-13 1E-17 123.7 4.5 101 530-639 15-124 (169)
88 1n0r_A 4ANK, 4 ankyrin repeats 99.4 3E-13 1E-17 116.6 4.3 101 529-638 2-111 (126)
89 3deo_A Signal recognition part 99.4 1.4E-13 4.8E-18 127.6 2.1 97 531-637 46-152 (183)
90 1ihb_A P18-INK4C(INK6), cyclin 99.4 7.7E-13 2.6E-17 119.7 6.9 100 530-639 6-114 (162)
91 4f7z_A RAP guanine nucleotide 99.3 2.5E-12 8.4E-17 150.6 12.6 113 372-487 333-447 (999)
92 2rfm_A Putative ankyrin repeat 99.3 2.8E-13 9.7E-18 126.6 3.7 108 523-639 29-145 (192)
93 3pjs_K KCSA, voltage-gated pot 99.3 1.5E-15 5E-20 137.2 -12.0 65 246-310 63-127 (166)
94 3f6q_A Integrin-linked protein 99.3 5E-13 1.7E-17 123.3 4.8 103 528-639 4-116 (179)
95 4b93_B Ankyrin repeat domain-c 99.3 2.9E-13 1E-17 133.7 3.2 105 527-640 84-197 (269)
96 2vge_A RELA-associated inhibit 99.3 4.4E-13 1.5E-17 129.1 4.4 96 531-635 23-128 (229)
97 1ycs_B 53BP2, P53BP2; ankyrin 99.3 4.4E-13 1.5E-17 130.1 4.2 97 530-635 38-144 (239)
98 2rfa_A Transient receptor pote 99.3 6.2E-13 2.1E-17 128.2 4.9 105 526-639 34-165 (232)
99 1yyh_A HN1;, notch 1, ankyrin 99.3 4.6E-13 1.6E-17 131.1 4.1 106 526-640 121-235 (253)
100 3ui2_A Signal recognition part 99.3 3.8E-13 1.3E-17 130.9 3.0 96 531-636 47-152 (244)
101 3ehr_A Osteoclast-stimulating 99.3 3.6E-13 1.2E-17 129.0 2.8 100 529-637 73-182 (222)
102 1bi7_B P16INK4A, MTS1, multipl 99.3 1.7E-12 5.8E-17 116.8 6.9 98 526-633 42-149 (156)
103 1oy3_D Transcription factor in 99.3 1.4E-12 4.8E-17 129.6 6.6 103 525-636 154-266 (282)
104 4hbd_A KN motif and ankyrin re 99.3 1.2E-12 4.2E-17 129.8 6.1 117 522-638 104-260 (276)
105 1bd8_A P19INK4D CDK4/6 inhibit 99.3 1.1E-12 3.9E-17 117.8 5.1 99 531-639 4-112 (156)
106 1awc_B Protein (GA binding pro 99.3 4.3E-13 1.5E-17 120.3 2.1 99 531-639 4-111 (153)
107 2xai_A ASB-9, ankyrin repeat a 99.3 1.4E-12 4.8E-17 128.3 5.9 102 528-638 100-209 (261)
108 3hra_A Ankyrin repeat family p 99.3 1.7E-12 5.8E-17 122.1 6.1 111 528-638 38-188 (201)
109 2f8y_A Notch homolog 1, transl 99.3 1.6E-12 5.4E-17 124.5 5.9 106 526-640 89-203 (223)
110 2xai_A ASB-9, ankyrin repeat a 99.3 1.4E-12 4.8E-17 128.3 5.2 104 526-638 33-144 (261)
111 3b7b_A Euchromatic histone-lys 99.3 1.9E-12 6.6E-17 125.1 6.0 105 526-639 108-221 (237)
112 3aji_A 26S proteasome non-ATPa 99.3 2.8E-12 9.5E-17 123.5 6.9 103 528-639 72-183 (231)
113 1ikn_D Protein (I-kappa-B-alph 99.3 6.4E-13 2.2E-17 128.5 2.3 112 529-640 45-196 (236)
114 3v30_A DNA-binding protein rfx 99.3 1.2E-12 4.2E-17 119.8 3.8 101 530-639 3-113 (172)
115 1s70_B 130 kDa myosin-binding 99.3 2.4E-12 8.2E-17 129.2 6.2 111 527-637 104-274 (299)
116 2dzn_A Probable 26S proteasome 99.3 2.9E-12 9.8E-17 123.0 6.2 103 526-637 104-217 (228)
117 1yyh_A HN1;, notch 1, ankyrin 99.3 1.1E-12 3.8E-17 128.4 3.3 101 530-639 91-201 (253)
118 3ljn_A Hypothetical protein; a 99.3 1.6E-12 5.4E-17 134.7 4.3 104 528-640 137-256 (364)
119 1k1a_A B-cell lymphoma 3-encod 99.3 2.3E-12 8E-17 124.8 4.9 104 526-638 113-226 (241)
120 1oy3_D Transcription factor in 99.3 5.1E-12 1.7E-16 125.5 7.2 116 525-640 41-237 (282)
121 3lvq_E ARF-GAP with SH3 domain 99.2 2.6E-12 9.1E-17 138.6 5.1 101 531-640 134-252 (497)
122 3aji_A 26S proteasome non-ATPa 99.2 3.1E-12 1.1E-16 123.1 4.9 102 527-637 104-214 (231)
123 2etb_A Transient receptor pote 99.2 1.5E-12 5E-17 127.7 2.2 105 527-640 88-233 (256)
124 1xl4_A Inward rectifier potass 99.2 1.7E-11 5.7E-16 120.9 9.6 84 205-305 54-137 (301)
125 2rfa_A Transient receptor pote 99.2 3.6E-12 1.2E-16 122.8 4.7 102 529-639 3-132 (232)
126 2f8y_A Notch homolog 1, transl 99.2 2.3E-12 8E-17 123.3 3.2 99 531-638 60-168 (223)
127 3d9h_A CDNA FLJ77766, highly s 99.2 5.4E-12 1.8E-16 125.8 6.0 101 528-637 156-264 (285)
128 1dcq_A PYK2-associated protein 99.2 3.3E-12 1.1E-16 126.7 4.2 100 532-640 133-250 (278)
129 2dzn_A Probable 26S proteasome 99.2 6E-12 2E-16 120.8 5.9 105 527-640 70-186 (228)
130 3hra_A Ankyrin repeat family p 99.2 6.4E-12 2.2E-16 118.1 5.9 84 526-618 103-201 (201)
131 3kea_A K1L; tropism, ANK repea 99.2 2.4E-12 8.2E-17 128.4 3.1 97 529-636 31-137 (285)
132 3twr_A Tankyrase-2; ankyrin re 99.2 2.3E-12 7.7E-17 117.1 2.3 102 530-640 9-120 (165)
133 1ikn_D Protein (I-kappa-B-alph 99.2 6.8E-12 2.3E-16 121.3 5.8 102 524-634 112-225 (236)
134 3jxi_A Vanilloid receptor-rela 99.2 1.5E-12 5.2E-17 127.9 1.1 104 528-640 92-237 (260)
135 3d9h_A CDNA FLJ77766, highly s 99.2 4.6E-12 1.6E-16 126.4 4.6 101 527-636 90-198 (285)
136 2zgd_A 3 repeat synthetic anky 99.2 3E-12 1E-16 107.7 2.6 81 526-639 21-101 (110)
137 2b0o_E UPLC1; arfgap, structur 99.2 3.7E-12 1.3E-16 127.8 3.7 101 531-640 153-271 (301)
138 3jue_A Arfgap with coiled-coil 99.2 4.4E-12 1.5E-16 130.4 4.3 100 531-639 201-312 (368)
139 2vge_A RELA-associated inhibit 99.2 6.2E-12 2.1E-16 120.9 5.1 100 526-634 51-162 (229)
140 1s70_B 130 kDa myosin-binding 99.2 2.9E-12 1E-16 128.6 2.7 100 530-638 41-149 (299)
141 4hbd_A KN motif and ankyrin re 99.2 5E-12 1.7E-16 125.4 4.3 83 527-618 181-273 (276)
142 2pnn_A Transient receptor pote 99.2 2.3E-12 7.7E-17 127.7 1.7 105 527-640 99-245 (273)
143 1n11_A Ankyrin; clathrin, BAND 99.2 9.7E-12 3.3E-16 132.1 6.4 105 526-639 275-388 (437)
144 1p7b_A Integral membrane chann 99.2 1.7E-11 6E-16 121.9 7.1 60 248-307 94-153 (333)
145 3kea_A K1L; tropism, ANK repea 99.2 1.9E-12 6.4E-17 129.2 0.1 104 527-639 93-206 (285)
146 2qks_A KIR3.1-prokaryotic KIR 99.2 6E-11 2.1E-15 117.8 10.6 59 250-308 78-136 (321)
147 2etb_A Transient receptor pote 99.2 3.2E-12 1.1E-16 125.2 1.1 104 525-637 39-181 (256)
148 3b7b_A Euchromatic histone-lys 99.2 2.2E-11 7.7E-16 117.6 6.5 101 529-638 77-187 (237)
149 1n11_A Ankyrin; clathrin, BAND 99.2 7.6E-12 2.6E-16 132.9 3.3 101 529-638 47-156 (437)
150 3utm_A Tankyrase-1; tankyrase, 99.1 2.9E-11 1E-15 124.0 6.9 105 523-636 52-165 (351)
151 1k1a_A B-cell lymphoma 3-encod 99.1 2.1E-11 7.1E-16 118.0 5.1 102 529-639 79-194 (241)
152 2fo1_E LIN-12 protein; beta-ba 99.1 2.9E-11 1E-15 125.5 6.2 107 525-640 231-358 (373)
153 1ycs_B 53BP2, P53BP2; ankyrin 99.1 5.9E-12 2E-16 122.0 0.6 103 528-640 4-115 (239)
154 3ljn_A Hypothetical protein; a 99.1 1.5E-11 5.2E-16 127.2 3.4 41 525-567 49-89 (364)
155 2pnn_A Transient receptor pote 99.1 9.3E-12 3.2E-16 123.2 1.5 104 526-638 51-194 (273)
156 1wdy_A 2-5A-dependent ribonucl 99.1 4.8E-11 1.6E-15 118.4 6.3 104 527-639 37-159 (285)
157 1d9s_A Cyclin-dependent kinase 99.1 6.6E-11 2.2E-15 103.6 6.4 84 527-620 43-136 (136)
158 3um7_A Potassium channel subfa 99.1 3E-10 1E-14 111.2 11.6 56 250-305 115-170 (309)
159 3jxi_A Vanilloid receptor-rela 99.1 2.6E-11 9.1E-16 118.9 4.1 102 527-637 44-185 (260)
160 3eu9_A Huntingtin-interacting 99.1 4.1E-11 1.4E-15 115.7 4.6 102 527-637 40-151 (240)
161 3t8k_A Uncharacterized protein 99.1 2.2E-11 7.6E-16 112.8 2.4 96 531-637 8-124 (186)
162 1wdy_A 2-5A-dependent ribonucl 99.1 3.5E-11 1.2E-15 119.4 4.0 100 531-639 7-116 (285)
163 3utm_A Tankyrase-1; tankyrase, 99.1 4.1E-11 1.4E-15 122.9 4.3 100 527-635 209-320 (351)
164 2b0o_E UPLC1; arfgap, structur 99.1 5E-11 1.7E-15 119.6 4.2 100 526-640 187-298 (301)
165 3eu9_A Huntingtin-interacting 99.1 5.5E-11 1.9E-15 114.7 4.0 104 527-639 107-221 (240)
166 4g8k_A 2-5A-dependent ribonucl 99.1 9.8E-11 3.4E-15 119.7 5.7 90 528-626 238-332 (337)
167 3sya_A G protein-activated inw 99.0 1.4E-09 4.6E-14 107.9 12.4 99 203-309 48-152 (340)
168 3lvq_E ARF-GAP with SH3 domain 99.0 3.1E-10 1.1E-14 122.3 8.0 97 526-631 168-276 (497)
169 1dcq_A PYK2-associated protein 99.0 3.5E-10 1.2E-14 112.0 7.5 93 522-623 162-266 (278)
170 2fo1_E LIN-12 protein; beta-ba 99.0 1.1E-10 3.7E-15 121.2 3.8 106 526-640 163-291 (373)
171 2jab_A H10-2-G3; HER2, darpin, 99.0 4.5E-10 1.5E-14 98.2 7.0 84 526-618 44-136 (136)
172 1n0r_A 4ANK, 4 ankyrin repeats 99.0 4.9E-10 1.7E-14 96.1 7.2 85 527-620 33-126 (126)
173 3c5r_A BARD-1, BRCA1-associate 99.0 2E-10 6.7E-15 100.6 3.5 79 552-640 1-88 (137)
174 2aja_A Ankyrin repeat family p 98.9 2.3E-11 7.7E-16 125.5 -4.2 103 529-640 92-211 (376)
175 3um7_A Potassium channel subfa 98.9 1.7E-09 5.9E-14 105.9 9.0 61 250-310 224-290 (309)
176 3ukm_A Potassium channel subfa 98.9 5E-09 1.7E-13 100.9 11.7 55 250-304 93-147 (280)
177 3spc_A Inward-rectifier K+ cha 98.9 3.3E-09 1.1E-13 105.3 10.6 98 203-308 50-154 (343)
178 4g8k_A 2-5A-dependent ribonucl 98.9 3.6E-10 1.2E-14 115.4 3.5 99 530-637 26-134 (337)
179 4gx0_A TRKA domain protein; me 98.9 6.7E-09 2.3E-13 113.7 11.4 86 200-303 19-105 (565)
180 2kyh_A KVAP, voltage-gated pot 98.9 1.8E-10 6.1E-15 100.7 -1.2 114 48-186 10-125 (147)
181 3ukm_A Potassium channel subfa 98.8 6.4E-09 2.2E-13 100.2 8.7 56 250-305 201-263 (280)
182 2l6b_A NR1C; ankyrin, consensu 98.8 1.2E-09 3.9E-14 92.4 2.9 74 557-639 4-86 (115)
183 1n0q_A 3ANK, 3 ankyrin repeats 98.8 3.8E-09 1.3E-13 85.4 5.8 62 526-620 32-93 (93)
184 3ehr_A Osteoclast-stimulating 98.8 1.1E-09 3.9E-14 104.4 1.8 94 526-628 103-206 (222)
185 1ors_C Potassium channel; volt 98.8 5.4E-10 1.9E-14 96.3 -0.5 80 65-159 6-87 (132)
186 1sw6_A Regulatory protein SWI6 98.8 5.1E-10 1.8E-14 113.8 -1.8 95 534-637 102-210 (327)
187 3jue_A Arfgap with coiled-coil 98.7 8.8E-09 3E-13 105.7 6.7 100 527-635 233-344 (368)
188 3aaa_C Myotrophin, protein V-1 98.7 2.6E-09 9E-14 91.4 1.9 72 559-639 4-84 (123)
189 3deo_A Signal recognition part 98.6 7.4E-10 2.5E-14 102.3 -4.9 73 559-640 41-122 (183)
190 2aja_A Ankyrin repeat family p 98.6 2.5E-09 8.7E-14 110.2 -3.8 88 530-626 164-256 (376)
191 1lnq_A MTHK channels, potassiu 98.5 7.7E-09 2.6E-13 105.3 -2.0 57 250-306 45-101 (336)
192 3ui2_A Signal recognition part 98.5 6.9E-08 2.4E-12 93.5 4.2 88 524-620 72-185 (244)
193 2zgd_A 3 repeat synthetic anky 98.1 3.4E-06 1.2E-10 70.2 5.8 56 526-614 54-109 (110)
194 3kg2_A Glutamate receptor 2; I 76.9 2.7 9.1E-05 47.5 6.1 56 249-305 562-617 (823)
195 3fjs_A Uncharacterized protein 76.1 15 0.00053 29.4 9.0 67 399-475 38-104 (114)
196 3rns_A Cupin 2 conserved barre 73.9 13 0.00044 34.3 9.0 69 399-477 39-107 (227)
197 4f4l_A ION transport protein; 73.8 4 0.00014 33.0 4.7 64 246-309 34-103 (112)
198 2ozj_A Cupin 2, conserved barr 71.3 12 0.00042 29.8 7.3 64 403-476 44-107 (114)
199 3rvy_A ION transport protein; 68.7 8.2 0.00028 37.1 6.6 24 249-272 175-198 (285)
200 1yhf_A Hypothetical protein SP 67.5 33 0.0011 27.1 9.2 68 399-476 42-109 (115)
201 1zvf_A 3-hydroxyanthranilate 3 67.0 21 0.00072 31.0 7.9 61 414-479 51-114 (176)
202 3lwc_A Uncharacterized protein 63.5 17 0.00057 29.6 6.5 66 401-476 44-109 (119)
203 2r9r_B Paddle chimera voltage 62.2 9.1 0.00031 40.4 5.8 20 170-189 305-324 (514)
204 1orq_C Potassium channel; volt 61.8 51 0.0017 30.0 10.4 16 167-182 99-114 (223)
205 2pfw_A Cupin 2, conserved barr 60.6 41 0.0014 26.6 8.5 68 399-476 36-103 (116)
206 1v70_A Probable antibiotics sy 59.2 37 0.0012 26.0 7.8 69 400-476 31-100 (105)
207 1yfu_A 3-hydroxyanthranilate-3 57.2 21 0.0007 31.1 6.1 58 416-479 54-112 (174)
208 3jzv_A Uncharacterized protein 53.8 34 0.0012 29.7 7.2 44 402-450 58-101 (166)
209 2qnk_A 3-hydroxyanthranilate 3 53.3 44 0.0015 31.6 8.0 63 409-478 44-106 (286)
210 3beh_A MLL3241 protein; transm 53.1 11 0.00036 37.7 4.3 21 165-185 98-118 (355)
211 3ibm_A Cupin 2, conserved barr 52.1 76 0.0026 27.3 9.3 69 400-476 59-128 (167)
212 3es1_A Cupin 2, conserved barr 51.8 18 0.00061 31.7 5.0 68 401-476 83-150 (172)
213 3d0j_A Uncharacterized protein 51.6 83 0.0028 26.2 8.6 64 411-479 44-110 (140)
214 1dgw_A Canavalin; duplicated s 51.6 22 0.00076 31.3 5.7 52 399-451 43-94 (178)
215 3rns_A Cupin 2 conserved barre 51.2 48 0.0016 30.4 8.2 68 399-476 155-223 (227)
216 3kgz_A Cupin 2 conserved barre 50.9 35 0.0012 29.2 6.7 44 402-450 49-92 (156)
217 1o5u_A Novel thermotoga mariti 49.6 53 0.0018 25.6 7.0 45 401-451 35-79 (101)
218 4dxw_A Navrh, ION transport pr 48.0 31 0.0011 31.6 6.4 19 251-269 162-180 (229)
219 2gu9_A Tetracenomycin polyketi 47.0 63 0.0021 25.1 7.4 69 400-476 24-95 (113)
220 4e2g_A Cupin 2 conserved barre 45.3 37 0.0013 27.4 5.8 77 399-485 43-123 (126)
221 1fi2_A Oxalate oxidase, germin 44.5 90 0.0031 27.8 8.8 53 399-451 74-130 (201)
222 1o4t_A Putative oxalate decarb 43.4 46 0.0016 27.3 6.2 45 401-450 61-106 (133)
223 1ors_C Potassium channel; volt 39.6 23 0.0008 29.4 3.6 20 168-187 98-117 (132)
224 1vj2_A Novel manganese-contain 39.4 53 0.0018 26.6 5.9 68 401-476 52-119 (126)
225 2f4p_A Hypothetical protein TM 38.0 78 0.0027 26.5 6.9 70 401-477 52-121 (147)
226 2i45_A Hypothetical protein; n 37.7 32 0.0011 26.9 4.1 66 405-480 36-102 (107)
227 3h8u_A Uncharacterized conserv 37.4 64 0.0022 25.8 6.1 71 399-476 41-112 (125)
228 2bnm_A Epoxidase; oxidoreducta 37.4 54 0.0019 29.0 6.1 71 402-476 122-196 (198)
229 2pyt_A Ethanolamine utilizatio 37.4 42 0.0014 27.8 4.9 64 401-476 61-124 (133)
230 2fqp_A Hypothetical protein BP 37.0 38 0.0013 26.0 4.3 48 401-451 22-70 (97)
231 3i7d_A Sugar phosphate isomera 36.7 75 0.0026 27.2 6.7 47 400-451 46-94 (163)
232 1y9q_A Transcriptional regulat 36.2 95 0.0032 27.2 7.5 44 402-450 109-154 (192)
233 4b29_A Dimethylsulfoniopropion 35.6 52 0.0018 29.9 5.4 44 403-450 138-181 (217)
234 3l2h_A Putative sugar phosphat 35.4 75 0.0026 27.0 6.5 46 400-450 49-96 (162)
235 3d82_A Cupin 2, conserved barr 34.8 95 0.0032 23.5 6.5 51 417-477 50-100 (102)
236 4i4a_A Similar to unknown prot 34.2 1.8E+02 0.006 23.2 8.7 78 402-487 39-118 (128)
237 2q1z_B Anti-sigma factor CHRR, 33.7 55 0.0019 29.2 5.4 65 398-476 126-192 (195)
238 1sfn_A Conserved hypothetical 33.5 1.2E+02 0.0042 27.9 8.1 70 398-475 166-236 (246)
239 1j58_A YVRK protein; cupin, de 33.4 1.6E+02 0.0054 29.3 9.5 75 399-477 259-335 (385)
240 2cav_A Protein (canavalin); vi 32.0 57 0.0019 33.5 5.8 53 398-451 87-139 (445)
241 2q30_A Uncharacterized protein 31.8 1.7E+02 0.0058 22.3 7.7 66 401-475 37-104 (110)
242 4axo_A EUTQ, ethanolamine util 30.8 1.6E+02 0.0053 25.0 7.4 52 416-477 83-134 (151)
243 3c3v_A Arachin ARAH3 isoform; 30.7 79 0.0027 32.9 6.6 59 392-450 367-427 (510)
244 2vpv_A Protein MIF2, MIF2P; nu 30.3 1.1E+02 0.0038 26.4 6.5 53 415-475 108-160 (166)
245 3h7j_A Bacilysin biosynthesis 30.3 1.3E+02 0.0045 27.6 7.7 68 401-476 149-217 (243)
246 2vqa_A SLL1358 protein, MNCA; 29.9 82 0.0028 31.0 6.6 50 400-450 55-106 (361)
247 2xp1_A SPT6; transcription, IW 29.6 80 0.0027 27.7 5.5 37 380-422 13-49 (178)
248 1fxz_A Glycinin G1; proglycini 29.2 84 0.0029 32.5 6.5 53 398-450 339-393 (476)
249 1j58_A YVRK protein; cupin, de 29.1 73 0.0025 31.8 6.1 51 399-450 81-132 (385)
250 3h7j_A Bacilysin biosynthesis 28.9 1.6E+02 0.0056 27.0 8.1 72 399-477 36-107 (243)
251 2d5f_A Glycinin A3B4 subunit; 28.7 93 0.0032 32.3 6.7 59 392-450 362-422 (493)
252 3es4_A Uncharacterized protein 28.4 44 0.0015 27.0 3.3 44 403-451 48-91 (116)
253 3cew_A Uncharacterized cupin p 27.5 1.6E+02 0.0054 23.4 6.9 68 401-476 30-99 (125)
254 3fz3_A Prunin; TREE NUT allerg 27.2 1.1E+02 0.0036 32.0 6.7 60 391-450 388-449 (531)
255 1x82_A Glucose-6-phosphate iso 27.2 1.6E+02 0.0055 25.8 7.4 58 417-477 96-153 (190)
256 2vqa_A SLL1358 protein, MNCA; 27.2 1.1E+02 0.0038 30.0 7.0 52 399-451 236-289 (361)
257 2kyh_A KVAP, voltage-gated pot 27.2 47 0.0016 28.1 3.5 16 170-185 106-121 (147)
258 3bcw_A Uncharacterized protein 27.0 37 0.0013 27.7 2.7 44 403-451 55-98 (123)
259 3pjz_A Potassium uptake protei 27.0 86 0.003 32.6 6.1 44 246-289 302-347 (494)
260 2b8m_A Hypothetical protein MJ 26.9 58 0.002 25.8 4.0 44 403-450 33-76 (117)
261 2oa2_A BH2720 protein; 1017534 26.6 1.4E+02 0.0049 24.7 6.6 73 401-476 47-121 (148)
262 2opk_A Hypothetical protein; p 26.5 52 0.0018 26.1 3.6 34 415-451 51-84 (112)
263 2qjv_A Uncharacterized IOLB-li 25.4 1.9E+02 0.0065 27.2 7.6 77 398-478 30-110 (270)
264 2ih3_C Voltage-gated potassium 25.1 52 0.0018 26.7 3.3 17 208-224 36-52 (122)
265 3bu7_A Gentisate 1,2-dioxygena 24.7 1.7E+02 0.0058 29.3 7.6 78 400-485 297-375 (394)
266 2lcm_A Voltage-dependent N-typ 24.1 60 0.002 18.7 2.4 19 169-187 5-23 (28)
267 1uij_A Beta subunit of beta co 23.6 78 0.0027 32.1 5.0 52 398-450 50-101 (416)
268 4e2q_A Ureidoglycine aminohydr 22.3 98 0.0034 29.1 5.0 70 400-478 73-142 (266)
269 2ea7_A 7S globulin-1; beta bar 22.2 92 0.0031 31.8 5.2 52 398-450 62-113 (434)
270 2e9q_A 11S globulin subunit be 21.8 1.5E+02 0.0052 30.4 6.7 59 392-450 317-377 (459)
271 1sfn_A Conserved hypothetical 21.6 2.3E+02 0.008 26.0 7.6 65 401-477 54-118 (246)
272 1lr5_A Auxin binding protein 1 21.4 91 0.0031 26.5 4.4 73 401-476 45-122 (163)
273 2d40_A Z3393, putative gentisa 20.2 1.8E+02 0.006 28.7 6.7 75 400-482 103-178 (354)
No 1
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=100.00 E-value=2.1e-42 Score=358.09 Aligned_cols=345 Identities=17% Similarity=0.224 Sum_probs=149.5
Q ss_pred EcCCChhHHHHHHHHHHHHHHHHHHhhhheecccCCCC---CeeehhhHhhHHHhhhheeeeeEEEEeCCceEEEeChhH
Q 006573 57 VSPYDRRYRVWETYLVLLVIYTAWASPFEFGFLRKPQR---PLSVIDNVVNGFFAVDIILTFFVAYLDKATYLLVDCPKQ 133 (640)
Q Consensus 57 ~~P~s~~~~~w~~~~~~~~~~~~~~~p~~~~f~~~~~~---~~~~i~~~~~~~f~~d~~l~f~t~~~~~~~~~~v~~~~~ 133 (640)
+.|+|+. ++.+++++++++++++..++.. ..... .+..++.++.++|++|+++|+..+ +++
T Consensus 3 ~~p~s~~---f~~~~~~~i~ls~~~~~~~t~~-~~~~~~~~~~~~~~~~~~~~f~~e~~~r~~~~------------~~~ 66 (355)
T 3beh_A 3 VLPFLRI---YAPLNAVLAAPGLLAVAALTIP-DMSGRSRLALAALLAVIWGAYLLQLAATLLKR------------RAG 66 (355)
T ss_dssp ----CCS---SSSHHHHHHHHHHHHHHHHTSS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------------CSC
T ss_pred CCchhHH---HHHHHHHHHHHHHHHHHHHccc-chhhhHHHHHHHHHhHHHHHHHHHHHHhcccc------------ccc
Confidence 5688875 4666666677777766666422 11111 233455566667899999998432 111
Q ss_pred HHHHHhh-hhhhhHhHhh-ccHHHHhhhCCCCccchhhhhHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHH
Q 006573 134 IAWKYAS-SWLVFDVIST-IPSELAQKISPKPLQSYGLFNMLRLWRLRRVSALFSRLEKDRNYNYFWVRCCKLIFVTLFA 211 (640)
Q Consensus 134 i~~~Yl~-~~f~~Dlis~-lP~~~~~~~~~~~~~~~~~l~~lrllrl~r~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~ 211 (640)
..|.+ .|+++|++++ +|++.... .+.+.++++|++|++|+.|..+.++.+......+. ..+..+++.++++
T Consensus 67 --~~~~~~~~~i~Dl~~i~~p~~~~~~---~~~~~~r~lr~~R~lrl~r~~~~~~~l~~~l~~~~--~~l~~~~~~~~~~ 139 (355)
T 3beh_A 67 --VVRDRTPKIAIDVLAVLVPLAAFLL---DGSPDWSLYCAVWLLKPLRDSTFFPVLGRVLANEA--RNLIGVTTLFGVV 139 (355)
T ss_dssp --SSCCCHHHHHHHHHHHHHHHHHHHS---CCSGGGGGGGGGGGSHHHHTCSSHHHHHHHHHHTH--HHHHHHHHHHHHH
T ss_pred --ceeccCcchHHHHHHHHHHHHHHHh---ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 34554 4789999999 68876432 13345667777777777776666666655543332 3566677777888
Q ss_pred HHHHHHHHHHHHHHhcCCCccccccccCCCccCcchHHHHHHHHHhhhhhhcccccCCcccCCchhhHHHHHHHHHHHHH
Q 006573 212 VHCAGCFYYLLAARYHNPERTWIGASLGQNFLEKSLWIRYVTSMYWSITTLTTVGYGDLHPVNTREMVFDILFMLFNLGL 291 (640)
Q Consensus 212 ~h~~ac~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~y~~s~yw~~~t~ttvGygd~~p~t~~e~~~~i~~~i~g~~~ 291 (640)
++++||++|.++.. .+++.+.+|.+|+||+++||||+||||++|.|+.|++++++++++|+++
T Consensus 140 ~~~~a~~~~~~e~~-----------------~~~~~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~ 202 (355)
T 3beh_A 140 LFAVALAAYVIERD-----------------IQPEKFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGI 202 (355)
T ss_dssp HHHHHHHHHHHHTT-----------------TCHHHHSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcC-----------------CCCcccccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHH
Confidence 99999999998831 2344577899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhcccccCcchHHHHhhhhHHHHhHHHH
Q 006573 292 TAYLIGNMTNLVVHGTSRTRKFRDTIQAASSFAQRNQLPIRLQDQMLAHLCLKFRTDSEGLQQQETLDSLPKAIRSSISH 371 (640)
Q Consensus 292 ~a~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~rv~~y~~~~~~~~~~~~~~~~~l~~lp~~lr~~i~~ 371 (640)
+++++|.+++.+....+ + +++.
T Consensus 203 ~~~~~~~i~~~~~~~~~------~----------------------~~~~------------------------------ 224 (355)
T 3beh_A 203 FGLWAGILATGFYQEVR------R----------------------GDFV------------------------------ 224 (355)
T ss_dssp HHHHHHHHHHHHHHHHH------H----------------------HHHH------------------------------
T ss_pred HHHHHHHHHHHHHHHHH------H----------------------Hhhc------------------------------
Confidence 99999999877643210 0 0000
Q ss_pred hhhHHhhhhccccccCCHHHHHHHHhccccccccCCCeEEEeCCCCCeEEEEEeceEEEEEeeCCceEEEEEecCCCeee
Q 006573 372 YLFYSLMDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQVVGEAKTGEICG 451 (640)
Q Consensus 372 ~~~~~~l~~~~~f~~ls~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fG 451 (640)
...+.++++|+|++++++++++++..++.+.++|||.|+++||+++++|+|.+|.|+++..+ ...+++|++||
T Consensus 225 -~~~~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~------~~~l~~G~~fG 297 (355)
T 3beh_A 225 -RNWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN------PVELGPGAFFG 297 (355)
T ss_dssp -HHHC---------------------------------------------------------------------------
T ss_pred -ccchhhhcccccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeeEEEEEECC------eeEECCCCEEe
Confidence 02356788999999999999999999999999999999999999999999999999998643 24789999999
Q ss_pred chhhhcCCCeeeEEEEccceEEEEeeHHHHHHHHHhchhhHHHHHHHHHHHHHcc
Q 006573 452 EIGVLCYRPQLFTVRTKRLSQLLRLNRTTFLNIVQANVGDGTIIMNNLLQHLKDL 506 (640)
Q Consensus 452 e~~l~~~~~~~~~~~a~~~~~v~~i~~~~f~~ll~~~~~~~~~~~~~l~~~l~~~ 506 (640)
|.+++.+.|+.++++|.++|+++.+++++|.++++++|++...+.+.+.+++++.
T Consensus 298 e~~~l~~~~~~~~~~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~l~~rl~~~ 352 (355)
T 3beh_A 298 EMALISGEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALERRGAA 352 (355)
T ss_dssp -------------------------------------------------------
T ss_pred ehHHhCCCCcceEEEECccEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999988888877553
No 2
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=100.00 E-value=1.1e-31 Score=254.21 Aligned_cols=195 Identities=19% Similarity=0.394 Sum_probs=182.8
Q ss_pred hhchhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhcccccCcchHHHHhhhhHHHHhHHHHhhhHHhhhhcccc
Q 006573 305 HGTSRTRKFRDTIQAASSFAQRNQLPIRLQDQMLAHLCLKFRTDSEGLQQQETLDSLPKAIRSSISHYLFYSLMDKVYLF 384 (640)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~rv~~y~~~~~~~~~~~~~~~~~l~~lp~~lr~~i~~~~~~~~l~~~~~f 384 (640)
+.+.++.+|+++++.+++||+.+++|++||.||++|+++.|+. ++.+++++++.||++||.++..+.+.++++++|+|
T Consensus 2 ~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~--~~~~e~~il~~l~~~Lr~~i~~~~~~~~l~~~~~f 79 (198)
T 2ptm_A 2 AMDSSSRQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYRG--KMFDERHIFREVSESIRQDVANYNCRDLVASVPFF 79 (198)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTT--CCCCSHHHHHHSCHHHHHHHHHHHTHHHHHHCGGG
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcc--cCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCcch
Confidence 4678889999999999999999999999999999999999985 67889999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHhccccccccCCCeEEEeCCCCCeEEEEEeceEEEEEeeCCceEEEEEecCCCeeechhhhcCCCeeeE
Q 006573 385 RGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQVVGEAKTGEICGEIGVLCYRPQLFT 464 (640)
Q Consensus 385 ~~ls~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~l~~~~~~~~~ 464 (640)
+++|++++..++..++...|+|||+|+++||.++.+|+|.+|.|+++. .+|+ .+..+++|++||+.+++.+.|+.++
T Consensus 80 ~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~-~~g~--~~~~l~~G~~fGe~~~~~~~~~~~~ 156 (198)
T 2ptm_A 80 VGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIM-SDGV--IATSLSDGSYFGEICLLTRERRVAS 156 (198)
T ss_dssp TTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCSEEEEEEECCEEEEC-TTSC--EEEEECTTCEESCHHHHHSSCCSSE
T ss_pred hcCCHHHHHHHHHhccceeeCCCCEEEECCCcCcEEEEEEeCEEEEEe-cCCe--EEEEecCCCEechHHHcCCCccceE
Confidence 999999999999999999999999999999999999999999999986 4565 7889999999999999999999999
Q ss_pred EEEccceEEEEeeHHHHHHHHHhchhhHHHHHHHHHHHHH
Q 006573 465 VRTKRLSQLLRLNRTTFLNIVQANVGDGTIIMNNLLQHLK 504 (640)
Q Consensus 465 ~~a~~~~~v~~i~~~~f~~ll~~~~~~~~~~~~~l~~~l~ 504 (640)
++|.++|+++.|++++|.++++++|++...+.+.+..++.
T Consensus 157 ~~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~~~rl~ 196 (198)
T 2ptm_A 157 VKCETYCTLFSLSVQHFNQVLDEFPAMRKTMEEIAVRRLT 196 (198)
T ss_dssp EEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHTCC-
T ss_pred EEEeeEEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999988887776653
No 3
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=99.97 E-value=5.6e-31 Score=250.10 Aligned_cols=197 Identities=17% Similarity=0.310 Sum_probs=183.7
Q ss_pred hhchhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhcccccCcchHHHHhhhhHHHHhHHHHhhhHHhhhhcccc
Q 006573 305 HGTSRTRKFRDTIQAASSFAQRNQLPIRLQDQMLAHLCLKFRTDSEGLQQQETLDSLPKAIRSSISHYLFYSLMDKVYLF 384 (640)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~rv~~y~~~~~~~~~~~~~~~~~l~~lp~~lr~~i~~~~~~~~l~~~~~f 384 (640)
+.+..+.+|+++++.+++||+.+++|++|+.||++|++|.|+. ++.+++++++.||++||.++..+.+.++++++|+|
T Consensus 3 ~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~--~~~~e~~il~~l~~~L~~~i~~~~~~~~l~~~~~f 80 (202)
T 3bpz_A 3 AMDSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQG--KMFDEDSILGELNGPLREKIVNFNCRKLVASMPLF 80 (202)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTT--CCCCHHHHHHHSCHHHHHHHHHHHTHHHHHTCHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--cCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCCch
Confidence 5678899999999999999999999999999999999999985 67899999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHhccccccccCCCeEEEeCCCCCeEEEEEeceEEEEEeeCCceEEEEEecCCCeeechhhhcCCCeeeE
Q 006573 385 RGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQVVGEAKTGEICGEIGVLCYRPQLFT 464 (640)
Q Consensus 385 ~~ls~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~l~~~~~~~~~ 464 (640)
++++++++..++..++...|+||++|+++||+++.+|+|.+|.|+++. ++|++. .+++|++||+.+++.+.++.++
T Consensus 81 ~~l~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~-~~g~~~---~l~~G~~fGe~~~~~~~~~~~~ 156 (202)
T 3bpz_A 81 ANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLT-KGNKEM---KLSDGSYFGEICLLTRGRRTAS 156 (202)
T ss_dssp HTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEC-TTSCCE---EEETTCEECHHHHHHCSBCSSE
T ss_pred hcCCHHHHHHHHHhCCceEECCCCEEEECCCcCCeEEEEeccEEEEEE-CCCeEE---EEcCCCEeccHHHhcCCCcccE
Confidence 999999999999999999999999999999999999999999999975 455532 6899999999999999999999
Q ss_pred EEEccceEEEEeeHHHHHHHHHhchhhHHHHHHHHHHHHHccc
Q 006573 465 VRTKRLSQLLRLNRTTFLNIVQANVGDGTIIMNNLLQHLKDLK 507 (640)
Q Consensus 465 ~~a~~~~~v~~i~~~~f~~ll~~~~~~~~~~~~~l~~~l~~~~ 507 (640)
++|.++|+++.|++++|.++++++|++...+...+..++....
T Consensus 157 v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~~~rl~~~~ 199 (202)
T 3bpz_A 157 VRADTYCRLYSLSVDNFNEVLEEYPMMRRAFETVAIDRLDRIG 199 (202)
T ss_dssp EEESSCEEEEEEEHHHHHHHHHHSGGGHHHHHHHHHHHHHHC-
T ss_pred EEEeeEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999888886653
No 4
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=99.97 E-value=1.7e-31 Score=255.89 Aligned_cols=200 Identities=18% Similarity=0.282 Sum_probs=179.1
Q ss_pred HHHHHhhchhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhhhcccccCcchHHHHhhhhHHHHhHHHHhhhHHhhh
Q 006573 300 TNLVVHGTSRTRKFRDTIQAASSFAQRNQLPIRLQDQMLAHLCLKFRTDSEGLQQQETLDSLPKAIRSSISHYLFYSLMD 379 (640)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~rv~~y~~~~~~~~~~~~~~~~~l~~lp~~lr~~i~~~~~~~~l~ 379 (640)
++++.+.++.+++|++++..+++||+.+++|++||.||++||+|.|+. .++.+++++++.||++||.++..+++..++
T Consensus 1 g~ii~~~~~~~~~~~~~~~~i~~ym~~~~i~~~l~~rv~~y~~~~~~~-~~~~~~~~il~~Lp~~L~~~i~~~~~~~l~- 78 (212)
T 3ukn_A 1 GAMDQRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSV-NNGIDVSELLKDFPDELRADIAMHLNKELL- 78 (212)
T ss_dssp -----------CHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCT-GGGCCCCCTTTTSCHHHHHHHHTTCCCGGG-
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh-cCCCCHHHHHHHcCHHHHHHHHHHHHHHHH-
Confidence 356788899999999999999999999999999999999999999986 467788899999999999999999998887
Q ss_pred hccccccCCHHHHHHHHhccccccccCCCeEEEeCCCCCeEEEEEeceEEEEEeeCCceEEEEEecCCCeeechhhhcCC
Q 006573 380 KVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQVVGEAKTGEICGEIGVLCYR 459 (640)
Q Consensus 380 ~~~~f~~ls~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~l~~~~ 459 (640)
++|+|++++++++..++..++...|+|||+|+++||.++.+|+|.+|.|+++. +| .++..+++|++|||.+++.+.
T Consensus 79 ~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~--~~--~~~~~l~~G~~fGe~~~~~~~ 154 (212)
T 3ukn_A 79 QLPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLK--DN--TVLAILGKGDLIGSDSLTKEQ 154 (212)
T ss_dssp GSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEES--SS--CEEEEECTTCEEECSCCSSSS
T ss_pred hcHHhhcCCHHHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEEecEEEEEE--CC--eEEEEecCCCCcCcHHhccCC
Confidence 79999999999999999999999999999999999999999999999999986 34 478899999999999999998
Q ss_pred --CeeeEEEEccceEEEEeeHHHHHHHHHhchhhHHHHHHHHHHHHHc
Q 006573 460 --PQLFTVRTKRLSQLLRLNRTTFLNIVQANVGDGTIIMNNLLQHLKD 505 (640)
Q Consensus 460 --~~~~~~~a~~~~~v~~i~~~~f~~ll~~~~~~~~~~~~~l~~~l~~ 505 (640)
++.++++|.++|+++.|++++|.++++.+|++...+.+.+..++..
T Consensus 155 ~~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~~l~~ 202 (212)
T 3ukn_A 155 VIKTNANVKALTYCDLQYISLKGLREVLRLYPEYAQKFVSEIQHDLTY 202 (212)
T ss_dssp CCBBCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHEEE
T ss_pred CCCcceEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999998887654
No 5
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.95 E-value=3.3e-28 Score=234.05 Aligned_cols=207 Identities=20% Similarity=0.291 Sum_probs=151.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhee--cccCCCCCeeehhhHhhHHHhhhheeeeeEEEEeCCceEEEeChhHHHHHHhhhhh
Q 006573 66 VWETYLVLLVIYTAWASPFEFG--FLRKPQRPLSVIDNVVNGFFAVDIILTFFVAYLDKATYLLVDCPKQIAWKYASSWL 143 (640)
Q Consensus 66 ~w~~~~~~~~~~~~~~~p~~~~--f~~~~~~~~~~i~~~~~~~f~~d~~l~f~t~~~~~~~~~~v~~~~~i~~~Yl~~~f 143 (640)
.|+.++.++++++++.++++.. +..+....+..+|.+++++|++|+++|+.++ +.+ ++|+++ +
T Consensus 9 ~f~~~i~~lil~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~iF~~e~~lr~~~~------------~~~--~~y~~~-~ 73 (223)
T 1orq_C 9 LVELGVSYAALLSVIVVVVECTMQLSGEYLVRLYLVDLILVIILWADYAYRAYKS------------GDP--AGYVKK-T 73 (223)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHTT------------SCH--HHHHHH-H
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHHHHHHccc------------ccH--HHHHHH-h
Confidence 4899999999999998887753 3334456788899999999999999999875 222 799988 8
Q ss_pred hhHhHhhccHHHHhhhCCCCccchhhhhHHHHHHHHHHHHHHHH---HHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006573 144 VFDVISTIPSELAQKISPKPLQSYGLFNMLRLWRLRRVSALFSR---LEKDRNYNYFWVRCCKLIFVTLFAVHCAGCFYY 220 (640)
Q Consensus 144 ~~Dlis~lP~~~~~~~~~~~~~~~~~l~~lrllrl~r~~~~~~~---l~~~~~~~~~~~~l~~l~~~~~~~~h~~ac~~~ 220 (640)
++|+++++|+++...... .....+.+|++|++|+.|+.+..+. ..+.........++..++..+++++|++||++|
T Consensus 74 iiDllailP~~~~~~~~~-~~~~~~~lr~lRllRllR~~r~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 152 (223)
T 1orq_C 74 LYEIPALVPAGLLALIEG-HLAGLGLFRLVRLLRFLRILLIISRGSKFLSAIADAADKIRFYHLFGAVMLTVLYGAFAIY 152 (223)
T ss_dssp HHHCTTHHHHHHHHHHHH-HHHTTTCHHHHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999987643100 0001223444444444444444331 111111111112466677778888999999999
Q ss_pred HHHHHhcCCCccccccccCCCccCcchHHHHHHHHHhhhhhhcccccCCcccCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 006573 221 LLAARYHNPERTWIGASLGQNFLEKSLWIRYVTSMYWSITTLTTVGYGDLHPVNTREMVFDILFMLFNLGLTAYLIGNMT 300 (640)
Q Consensus 221 ~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~y~~s~yw~~~t~ttvGygd~~p~t~~e~~~~i~~~i~g~~~~a~~i~~i~ 300 (640)
+++.. .+++.+.+|.+|+||+++||||+||||++|.|+.|++++++++++|+.++++++|.++
T Consensus 153 ~~e~~-----------------~~~~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~~i~ 215 (223)
T 1orq_C 153 IVEYP-----------------DPNSSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVS 215 (223)
T ss_dssp HTTSS-----------------STTCSCCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhC-----------------CcCCCcCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87621 1223346899999999999999999999999999999999999999999999999999
Q ss_pred HHHHh
Q 006573 301 NLVVH 305 (640)
Q Consensus 301 ~~~~~ 305 (640)
+.+.+
T Consensus 216 ~~~~~ 220 (223)
T 1orq_C 216 NMFQK 220 (223)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88865
No 6
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=99.94 E-value=1.1e-27 Score=256.19 Aligned_cols=230 Identities=16% Similarity=0.253 Sum_probs=167.9
Q ss_pred cccccCCCeEEcCCC-hhHHHHHHHHHHHHHHHHHHhhhhee--cccC--------------------------CCCCee
Q 006573 47 NRRVKLRRFIVSPYD-RRYRVWETYLVLLVIYTAWASPFEFG--FLRK--------------------------PQRPLS 97 (640)
Q Consensus 47 ~~~~~~~~~~~~P~s-~~~~~w~~~~~~~~~~~~~~~p~~~~--f~~~--------------------------~~~~~~ 97 (640)
..|.++|..+.+|.| ...++|+.+++++++++++++.++.. +... ....+.
T Consensus 163 ~~r~~lw~l~e~p~sS~~a~~f~~~~i~~Illsii~~~leT~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 242 (514)
T 2r9r_B 163 EFQRQVWLLFEYPESSGPARIIAIVSVMVILISIVSFCLETLPIFRDENEDMHGGGVTFHTYSQSTIGYQQSTSFTDPFF 242 (514)
T ss_dssp SSHHHHHHTTTCTTSCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHTCSTTTTSCCCCHHHHHHHHHSSCCCTTCCCHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccccccccchhhhHHH
Confidence 468888999999985 56788999999999999998877763 2111 123466
Q ss_pred ehhhHhhHHHhhhheeeeeEEEEeCCceEEEeChhHHHHHHhhh-hhhhHhHhhccHHHHhhhCCCC------ccchhhh
Q 006573 98 VIDNVVNGFFAVDIILTFFVAYLDKATYLLVDCPKQIAWKYASS-WLVFDVISTIPSELAQKISPKP------LQSYGLF 170 (640)
Q Consensus 98 ~i~~~~~~~f~~d~~l~f~t~~~~~~~~~~v~~~~~i~~~Yl~~-~f~~Dlis~lP~~~~~~~~~~~------~~~~~~l 170 (640)
++|.++.++|++|+++|+.++ +.+ ++|+++ |+++|+++++|+++........ ...+.++
T Consensus 243 ~ie~i~~~iFtiE~ilR~~~~------------~~k--~~Y~ks~wniiDli~iip~~i~l~~~~~~~~~~~~~~~~~~l 308 (514)
T 2r9r_B 243 IVETLCIIWFSFEFLVRFFAC------------PSK--AGFFTNIMNIIDIVAIIPYYVTIFLTESNKSVLQFQNVRRVV 308 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS------------SCS--SSSTTSHHHHHHHHTTHHHHHHHHHHHTSCSHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhC------------CcH--HHHHhchhHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHH
Confidence 799999999999999999765 211 689987 7899999999998755432111 0113445
Q ss_pred hHHHHHHHHHHHHHHH------HHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCccC
Q 006573 171 NMLRLWRLRRVSALFS------RLEKDRNYNYFWVRCCKLIFVTLFAVHCAGCFYYLLAARYHNPERTWIGASLGQNFLE 244 (640)
Q Consensus 171 ~~lrllrl~r~~~~~~------~l~~~~~~~~~~~~l~~l~~~~~~~~h~~ac~~~~~~~~~~~~~~~W~~~~~~~~~~~ 244 (640)
|++|++|++|+.++.+ .+...+..+. ..+..++++++++++++|+++|+.+.. ..
T Consensus 309 rvlRllRvlRilkL~r~~~~l~~l~~tl~~s~--~~l~~ll~~l~i~~~if~~~~~~~e~~-----------------~~ 369 (514)
T 2r9r_B 309 QIFRIMRILRIFKLSRHSKGLQILGQTLKASM--RELGLLIFFLFIGVILFSSAVYFAEAD-----------------ER 369 (514)
T ss_dssp HHHHHHGGGGGGGGGGSCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHHHHHHHHTT-----------------CT
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhheeecc-----------------CC
Confidence 5555555555544432 2222222222 234455566667788888888876521 23
Q ss_pred cchHHHHHHHHHhhhhhhcccccCCcccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Q 006573 245 KSLWIRYVTSMYWSITTLTTVGYGDLHPVNTREMVFDILFMLFNLGLTAYLIGNMTNLVVHGTSR 309 (640)
Q Consensus 245 ~~~~~~y~~s~yw~~~t~ttvGygd~~p~t~~e~~~~i~~~i~g~~~~a~~i~~i~~~~~~~~~~ 309 (640)
++.+.+|++|+||+++||||+||||+.|.|..+++++++++++|+++++++++.|.+.+....++
T Consensus 370 ~~~F~s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f~~~~~~ 434 (514)
T 2r9r_B 370 DSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHR 434 (514)
T ss_dssp TCSCSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred CccccchhhhhheeeeEEEecccCCCCCCCcchHhhehhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567899999999999999999999999999999999999999999999999999988776553
No 7
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=99.84 E-value=1.8e-20 Score=170.29 Aligned_cols=142 Identities=18% Similarity=0.256 Sum_probs=125.1
Q ss_pred hHHHHhhhhHHHHhHHHHhhhHHhhhhccccccCCHHHHHHHHhccccccccCCCeEEEeCCCCCeEEEEEeceEEEEEe
Q 006573 354 QQETLDSLPKAIRSSISHYLFYSLMDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVL 433 (640)
Q Consensus 354 ~~~~l~~lp~~lr~~i~~~~~~~~l~~~~~f~~ls~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~v~~~ 433 (640)
.+++++.||+++|.++..+++.++++++|+|++++++.++.++..++...|++|++|+++||+++.+|+|.+|.|+++.
T Consensus 5 ~~~il~~lp~~l~~~i~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~- 83 (160)
T 4f8a_A 5 TEKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQ- 83 (160)
T ss_dssp ----------CCHHHHHHHHTHHHHTTCGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEE-
T ss_pred hHHHHHHCCHHHHHHHHHHHHHHHHHhCHhhhhCCHHHHHHHHHhceeeeeCCCCEEEeCCCCccEEEEEEeeEEEEEE-
Confidence 3458999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred eCCceEEEEEecCCCeeechhhhcC--CCeeeEEEEccceEEEEeeHHHHHHHHHhchhhHHHHHHHH
Q 006573 434 KNGVEQVVGEAKTGEICGEIGVLCY--RPQLFTVRTKRLSQLLRLNRTTFLNIVQANVGDGTIIMNNL 499 (640)
Q Consensus 434 ~~g~~~~~~~l~~G~~fGe~~l~~~--~~~~~~~~a~~~~~v~~i~~~~f~~ll~~~~~~~~~~~~~l 499 (640)
+ +..+..+.+|++||+.+++.+ .++.++++|.++|+++.|++++|.++++++|++...+.+.+
T Consensus 84 -~--~~~~~~~~~G~~fG~~~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l 148 (160)
T 4f8a_A 84 -D--DEVVAILGKGDVFGDVFWKEATLAQSCANVRALTYCDLHVIKRDALQKVLEFYTAFSHSFSRNL 148 (160)
T ss_dssp -T--TEEEEEEETTCEEECCTTTCSSCCBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHC
T ss_pred -C--CEEEEEecCCCEeCcHHHhcCcccceEEEEEECCceEEEEEcHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 347889999999999999988 79999999999999999999999999999999998877665
No 8
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.82 E-value=3.9e-20 Score=163.77 Aligned_cols=131 Identities=19% Similarity=0.242 Sum_probs=74.7
Q ss_pred hhhhHhHhhccHHHHhhhCCCCccchhhhhHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006573 142 WLVFDVISTIPSELAQKISPKPLQSYGLFNMLRLWRLRRVSALFSRLEKDRNYNYFWVRCCKLIFVTLFAVHCAGCFYYL 221 (640)
Q Consensus 142 ~f~~Dlis~lP~~~~~~~~~~~~~~~~~l~~lrllrl~r~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~~h~~ac~~~~ 221 (640)
+.++|+++++|+ +|.+|++|++|+. +.+. ....+. ..+...++.+++++.++|+++|+
T Consensus 15 ~~~~dli~~lp~----------------lr~lRllRi~ril-l~r~-~~~l~~----~~~~~~~~~~~~~i~~~a~~~~~ 72 (155)
T 2a9h_A 15 EGRGRLIKHMPP----------------MLSGLLARLVKLL-LGRH-GSALHW----RAAGAATVLLVIVLLAGSYLAVL 72 (155)
T ss_dssp -------------------------------------------------CCHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHH----------------HHHHHHHHHHHHH-HHHH-HHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999996 2333344444433 1111 111111 11222333344455667777777
Q ss_pred HHHHhcCCCccccccccCCCccCcchHHHHHHHHHhhhhhhcccccCCcccCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 006573 222 LAARYHNPERTWIGASLGQNFLEKSLWIRYVTSMYWSITTLTTVGYGDLHPVNTREMVFDILFMLFNLGLTAYLIGNMTN 301 (640)
Q Consensus 222 ~~~~~~~~~~~W~~~~~~~~~~~~~~~~~y~~s~yw~~~t~ttvGygd~~p~t~~e~~~~i~~~i~g~~~~a~~i~~i~~ 301 (640)
++.. .+++.+.+|.+|+||+++||||+||||++|.|+.+++++++++++|+++++++++.+++
T Consensus 73 ~E~~-----------------~~~~~~~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~ 135 (155)
T 2a9h_A 73 AERG-----------------APGAALISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVAT 135 (155)
T ss_dssp HHTT-----------------SSCSSTTSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hhcc-----------------CCCCccCcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7731 23445678999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhchhhH
Q 006573 302 LVVHGTSRTR 311 (640)
Q Consensus 302 ~~~~~~~~~~ 311 (640)
.+.+..++++
T Consensus 136 ~~~~~~~~~~ 145 (155)
T 2a9h_A 136 WFVGREQERR 145 (155)
T ss_dssp HHHSCCC---
T ss_pred HHHHHHHHHH
Confidence 9988765543
No 9
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=99.79 E-value=9.6e-19 Score=163.25 Aligned_cols=139 Identities=17% Similarity=0.245 Sum_probs=126.1
Q ss_pred hHHHHhhhHHhhhhccccccCCHHHHHHHHhccccccccCCCeEEEeCCCCCeEEEEEeceEEEEEe-eCCceEEEEEec
Q 006573 367 SSISHYLFYSLMDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVL-KNGVEQVVGEAK 445 (640)
Q Consensus 367 ~~i~~~~~~~~l~~~~~f~~ls~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~v~~~-~~g~~~~~~~l~ 445 (640)
.+.......++++++|+|+.++++.++.++..++.+.|++|++|+++|++++.+|+|.+|.|+++.. .+|++..+..+.
T Consensus 30 ~~~~~~~~~~~L~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~ly~I~~G~v~v~~~~~~g~~~~~~~~~ 109 (187)
T 3gyd_A 30 ADKYFEEILEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGEVNVIKDIPNKGIQTIAKVG 109 (187)
T ss_dssp GGGGHHHHHHHHTTCCSSCCCCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEEETTTEEEEEEEEE
T ss_pred cHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEEeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCeEEEEEcc
Confidence 3444556678999999999999999999999999999999999999999999999999999999885 678888999999
Q ss_pred CCCeeechhhhcCCCeeeEEEEccceEEEEeeHHHHHHHHHhchhhHHHHH----HHHHHHHHc
Q 006573 446 TGEICGEIGVLCYRPQLFTVRTKRLSQLLRLNRTTFLNIVQANVGDGTIIM----NNLLQHLKD 505 (640)
Q Consensus 446 ~G~~fGe~~l~~~~~~~~~~~a~~~~~v~~i~~~~f~~ll~~~~~~~~~~~----~~l~~~l~~ 505 (640)
+|++||+.+++.+.|+.++++|.++|+++.|++++|.++++++|++...++ +.+.++++.
T Consensus 110 ~G~~fGe~~~l~~~~~~~~v~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~rl~~ 173 (187)
T 3gyd_A 110 AGAIIGEMSMIDGMPRSASCVASLPTDFAVLSRDALYQLLANMPKLGNKVLIRLLQLLTARFRE 173 (187)
T ss_dssp TTCEESHHHHHHCCCCSSEEEEEEEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeeeeHHHhCCCCeeEEEEECCCeEEEEEcHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998888 444445444
No 10
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=99.79 E-value=7.7e-19 Score=156.00 Aligned_cols=131 Identities=15% Similarity=0.246 Sum_probs=116.8
Q ss_pred HHhhhhccccccCCHHHHHHHHhccccccccCCCeEEEeCCCCCeEEEEEeceEEEEE-eeCCceEE---EEEecCCCee
Q 006573 375 YSLMDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLV-LKNGVEQV---VGEAKTGEIC 450 (640)
Q Consensus 375 ~~~l~~~~~f~~ls~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~v~~-~~~g~~~~---~~~l~~G~~f 450 (640)
.++++++|+|++++++.++.++..++...|++|++|+++|++++.+|+|.+|.|+++. ..+|++.. +..+.+|++|
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~~~~G~~f 84 (142)
T 3mdp_A 5 PERLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSNGGAGSAANSTVCSVVPGAIF 84 (142)
T ss_dssp TTGGGGSHHHHTSCHHHHHHHHHTEEEEEECTTCEEECTTSBCCEEEEEEESCEEEECC---------CEEEEECTTCEE
T ss_pred HHHHhhCchhccCCHHHHHHHHHhhcEEecCCCCEEEeCCCCCCcEEEEEeCEEEEEEECCCCCceEeeeEEEecCCCEe
Confidence 4578999999999999999999999999999999999999999999999999999986 46677777 9999999999
Q ss_pred echhhhcCCCeeeEEEEccceEEEEeeHHHHHHHHHhchhhHHHHHHHHHHHHHc
Q 006573 451 GEIGVLCYRPQLFTVRTKRLSQLLRLNRTTFLNIVQANVGDGTIIMNNLLQHLKD 505 (640)
Q Consensus 451 Ge~~l~~~~~~~~~~~a~~~~~v~~i~~~~f~~ll~~~~~~~~~~~~~l~~~l~~ 505 (640)
|+.+++.+.++.++++|.++|+++.|++++|.++++++|++...+++.+.+.+.+
T Consensus 85 G~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~ 139 (142)
T 3mdp_A 85 GVSSLIKPYHYTSSARATKPVRVVDINGARLREMSENNQALGQVLMNNVAAAVLA 139 (142)
T ss_dssp CGGGSSTTCBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred chHHHcCCCCceEEEEECCcEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998888877643
No 11
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=99.79 E-value=1.1e-18 Score=164.05 Aligned_cols=152 Identities=14% Similarity=0.091 Sum_probs=132.8
Q ss_pred hHHhhhhccccccCCHHHHHHHHhccccccccCCCeEEEeCCCCCeEEEEEeceEEEEEe-eCCceEEEEEecCCCeeec
Q 006573 374 FYSLMDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVL-KNGVEQVVGEAKTGEICGE 452 (640)
Q Consensus 374 ~~~~l~~~~~f~~ls~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~v~~~-~~g~~~~~~~l~~G~~fGe 452 (640)
...+++.++.|..++++.++.+...++.+.|++|++|+++||+++.+|+|.+|.|+++.. .+|++.++..+.+|++|||
T Consensus 5 ~~~l~~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~G~~~~~~y~i~~G~v~~~~~~~~G~e~~~~~~~~g~~~ge 84 (194)
T 3dn7_A 5 HTALINHIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCLRLFFIDEKGIEQTTQFAIENWWLSD 84 (194)
T ss_dssp CHHHHHHHHTTSCCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEECC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHhCEEEEEcCCCEEECCCCeeeEEEEeecCeEEEEEECCCCCEEEEEEccCCcEEee
Confidence 356778899999999999999999999999999999999999999999999999999874 6788999999999999998
Q ss_pred h-hhhcCCCeeeEEEEccceEEEEeeHHHHHHHHHhchhhHHHHHHHHHHHHHcccchhhhhhhhhhHhhhhcc
Q 006573 453 I-GVLCYRPQLFTVRTKRLSQLLRLNRTTFLNIVQANVGDGTIIMNNLLQHLKDLKDPIMEGVLLETENMLARG 525 (640)
Q Consensus 453 ~-~l~~~~~~~~~~~a~~~~~v~~i~~~~f~~ll~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~rl~~g 525 (640)
. +++.+.|+.++++|.++|+++.|++++|.++++++|++...+...+..++....+........++++|++.-
T Consensus 85 ~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~Rl~~~ 158 (194)
T 3dn7_A 85 YMAFQKQQPADFYIQSVENCELLSITYTEQENLFERIPALERYFRLVYQKSFAAAQLRSKFQHMYSKEEQYHNF 158 (194)
T ss_dssp HHHHHHTCBCSSEEEESSCEEEEEEEHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred hHHHhcCCCCceEEEEECCEEEEEEeHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 7 788899999999999999999999999999999999999999999998888777777777777888887753
No 12
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=99.79 E-value=7.3e-19 Score=157.50 Aligned_cols=135 Identities=16% Similarity=0.258 Sum_probs=125.9
Q ss_pred HHhhhhccccccCCHHHHHHHHhccccccccCCCeEEEeCCCCCeEEEEEeceEEEEEe-eCCceEEEEEecCCCeeech
Q 006573 375 YSLMDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVL-KNGVEQVVGEAKTGEICGEI 453 (640)
Q Consensus 375 ~~~l~~~~~f~~ls~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~v~~~-~~g~~~~~~~l~~G~~fGe~ 453 (640)
.++++++++|..++++.++.++..++...|++|++|+++|++++.+|+|.+|.|+++.. .+|++..+..+.+|++||+.
T Consensus 4 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~ 83 (149)
T 2pqq_A 4 DDVLRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDGRENMLAVVGPSELIGEL 83 (149)
T ss_dssp GGGGTSSTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSEECEEEEEEESCEEEEEECTTSSEEEEEEECTTCEESGG
T ss_pred HHHhhhChhhhcCCHHHHHHHHHhceEEEeCCCCEEECCCCCCCeEEEEEecEEEEEEECCCCcEEEEEEcCCcCEechH
Confidence 46789999999999999999999999999999999999999999999999999999875 56888899999999999999
Q ss_pred hhhcCCCeeeEEEEccceEEEEeeHHHHHHHHHhchhhHHHHHHHHHHHHHcccch
Q 006573 454 GVLCYRPQLFTVRTKRLSQLLRLNRTTFLNIVQANVGDGTIIMNNLLQHLKDLKDP 509 (640)
Q Consensus 454 ~l~~~~~~~~~~~a~~~~~v~~i~~~~f~~ll~~~~~~~~~~~~~l~~~l~~~~~~ 509 (640)
+++.+.|+.++++|.++|+++.|++++|.++++++|++...+.+.+..++....+.
T Consensus 84 ~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~~l~~~~~~ 139 (149)
T 2pqq_A 84 SLFDPGPRTATGTALTEVKLLALGHGDLQPWLNVRPEVATALLRAVARRLRKTNDA 139 (149)
T ss_dssp GGTSCEECSSEEEESSCEEEEEEEGGGHHHHHHHCTHHHHHHHHHHHHHHHHHHTT
T ss_pred HhcCCCCcceEEEEccceEEEEEeHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888887665443
No 13
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=99.78 E-value=2.4e-18 Score=164.66 Aligned_cols=147 Identities=19% Similarity=0.254 Sum_probs=135.2
Q ss_pred hhhccccccCCHHHHHHHHhccccccccCCCeEEEeCCCCCeEEEEEeceEEEEEe-eCCceEEEEEecCCCeeechhhh
Q 006573 378 MDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVL-KNGVEQVVGEAKTGEICGEIGVL 456 (640)
Q Consensus 378 l~~~~~f~~ls~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~v~~~-~~g~~~~~~~l~~G~~fGe~~l~ 456 (640)
++++|+|+.++++.++.+...++...|++|++|+.+||+++.+|+|.+|.|+++.. .+|++.++..+.+|++||+.+++
T Consensus 1 L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~ 80 (216)
T 4ev0_A 1 MKGSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQERTLALLGPGELFGEMSLL 80 (216)
T ss_dssp ---CGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECSSSCEEEEEEECTTCEECHHHHH
T ss_pred CCCChhhcCCCHHHHHHHHHhheEEEeCCCCEEEeCCCCCCEEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEeehhhc
Confidence 46789999999999999999999999999999999999999999999999999875 77888899999999999999999
Q ss_pred cCCCeeeEEEEccceEEEEeeHHHHHHHHHhchhhHHHHHHHHHHHHHcccchhhhhhhhhhHhhhhc
Q 006573 457 CYRPQLFTVRTKRLSQLLRLNRTTFLNIVQANVGDGTIIMNNLLQHLKDLKDPIMEGVLLETENMLAR 524 (640)
Q Consensus 457 ~~~~~~~~~~a~~~~~v~~i~~~~f~~ll~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~rl~~ 524 (640)
.+.|+.++++|.++|+++.+++++|.++++++|++...+.+.+..++....+........+..+|++.
T Consensus 81 ~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Rl~~ 148 (216)
T 4ev0_A 81 DEGERSASAVAVEDTELLALFREDYLALIRRLPLVAHNLAALLARRLREADLELDLLSFEEARNRVAY 148 (216)
T ss_dssp HCCBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcceEEEEcCCEEEEEEcHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999998887777777777777777764
No 14
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=99.78 E-value=7e-19 Score=160.03 Aligned_cols=129 Identities=22% Similarity=0.351 Sum_probs=119.5
Q ss_pred HHHHhhhHHhhhhccccccCCHHHHHHHHhccccccccCCCeEEEeCCCCCeEEEEEeceEEEEEeeCCceEEEEEecCC
Q 006573 368 SISHYLFYSLMDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQVVGEAKTG 447 (640)
Q Consensus 368 ~i~~~~~~~~l~~~~~f~~ls~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G 447 (640)
+.......++++++++|+.++++.++.++..++...|++|++|+++||.++.+|+|.+|.|+++...+|++..+..+.+|
T Consensus 30 ~~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~~~~~~~G 109 (161)
T 3idb_B 30 DDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNR 109 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEEETTEEEEEEEEESC
T ss_pred HHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhcceeEeCCCCEEEeCCCCCcEEEEEEeCEEEEEEcCCCCeEEEEEcCCC
Confidence 33445567899999999999999999999999999999999999999999999999999999998888999999999999
Q ss_pred CeeechhhhcCCCeeeEEEEccceEEEEeeHHHHHHHHHhchhhHHHHH
Q 006573 448 EICGEIGVLCYRPQLFTVRTKRLSQLLRLNRTTFLNIVQANVGDGTIIM 496 (640)
Q Consensus 448 ~~fGe~~l~~~~~~~~~~~a~~~~~v~~i~~~~f~~ll~~~~~~~~~~~ 496 (640)
++||+.+++.+.++.++++|.++|+++.|++++|.++++++|.....++
T Consensus 110 ~~fGe~~~~~~~~~~~~v~A~~~~~~~~i~~~~~~~l~~~~p~~~~~~~ 158 (161)
T 3idb_B 110 GSFGELALMYNTPRAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMY 158 (161)
T ss_dssp CEECGGGGTCCCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHTSCCC-
T ss_pred CEechHHHHcCCCcccEEEECCCeEEEEEeHHHHHHHHHHCHHHHHHHH
Confidence 9999999999999999999999999999999999999999998765443
No 15
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=99.77 E-value=2.1e-18 Score=155.42 Aligned_cols=135 Identities=22% Similarity=0.291 Sum_probs=122.2
Q ss_pred HHhhhhccccccCCHHHHHHHHhccccccccCCCeEEEeCCCCCeEEEEEeceEEEEEe-eCCceEEEEEecCCCeeech
Q 006573 375 YSLMDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVL-KNGVEQVVGEAKTGEICGEI 453 (640)
Q Consensus 375 ~~~l~~~~~f~~ls~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~v~~~-~~g~~~~~~~l~~G~~fGe~ 453 (640)
.++++++++|..++++.++.++..++...|++|++|+++|++++.+|+|.+|.|+++.. .+|++..+..+.+|++||+.
T Consensus 11 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~ 90 (154)
T 2z69_A 11 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAEA 90 (154)
T ss_dssp HHHHTTSTTTTTSCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEESCEEEECCCC-----CCEEECTTEEESGG
T ss_pred HHHhhcChhhcCCCHHHHHHHHhhCcEEEecCCCEEecCCCccceEEEEEeCEEEEEEECCCCCEEEEEEccCCCeeccH
Confidence 46789999999999999999999999999999999999999999999999999999874 56888889999999999999
Q ss_pred hhhcCCC-eeeEEEEccceEEEEeeHHHHHHHHHhchhhHHHHHHHHHHHHHcccch
Q 006573 454 GVLCYRP-QLFTVRTKRLSQLLRLNRTTFLNIVQANVGDGTIIMNNLLQHLKDLKDP 509 (640)
Q Consensus 454 ~l~~~~~-~~~~~~a~~~~~v~~i~~~~f~~ll~~~~~~~~~~~~~l~~~l~~~~~~ 509 (640)
+++.+.+ +.++++|.++|+++.|++++|.++++++|++...+.+.+..++....+.
T Consensus 91 ~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~~~~rl~~~~~~ 147 (154)
T 2z69_A 91 MMFMDTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLSTRLHQRIDE 147 (154)
T ss_dssp GGGSSCSBCSSEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHHHHTCCSSC
T ss_pred hhccCCCCCceEEEEccceEEEEECHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHH
Confidence 9999998 9999999999999999999999999999999999999999988776443
No 16
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=99.77 E-value=1e-18 Score=154.72 Aligned_cols=131 Identities=18% Similarity=0.222 Sum_probs=116.8
Q ss_pred hhhHHHHhHHHHhhhHHhhhhccccccCCHHHHHHHHhccccccccCCCeEEEeCCCCCeEEEEEeceEEEEEeeCCceE
Q 006573 360 SLPKAIRSSISHYLFYSLMDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQ 439 (640)
Q Consensus 360 ~lp~~lr~~i~~~~~~~~l~~~~~f~~ls~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~v~~~~~g~~~ 439 (640)
++|..+|.+.......++++++++|+.++++.++.++..++.+.|++|++|+++|+.++.+|+|.+|.|++.. +|+
T Consensus 7 ~~p~~~k~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~--~g~-- 82 (139)
T 3ocp_A 7 TLPFYPKSPQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK--EGV-- 82 (139)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCTTTTTSCHHHHHHHHHHCEEEEECSSCEEECTTSCCCEEEEEEECCEEEEE--TTE--
T ss_pred cCCCCCCCHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEecCCCCEEEeCCCcCCEEEEEEeCEEEEEE--CCE--
Confidence 4677788888888889999999999999999999999999999999999999999999999999999999965 553
Q ss_pred EEEEecCCCeeechhhhcCCCeeeEEEEccceEEEEeeHHHHHHHHHhchhhHHH
Q 006573 440 VVGEAKTGEICGEIGVLCYRPQLFTVRTKRLSQLLRLNRTTFLNIVQANVGDGTI 494 (640)
Q Consensus 440 ~~~~l~~G~~fGe~~l~~~~~~~~~~~a~~~~~v~~i~~~~f~~ll~~~~~~~~~ 494 (640)
.+..+.+|++||+.+++.+.++.++++|.++|+++.|++++|.++++++|...+.
T Consensus 83 ~~~~~~~G~~fGe~~~l~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~r~ 137 (139)
T 3ocp_A 83 KLCTMGPGKVFGELAILYNCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHT 137 (139)
T ss_dssp EEEEECTTCEESCHHHHHCCCCSSEEEESSCEEEEEEEHHHHHHHHTC-------
T ss_pred EEEEeCCCCEeccHHHHCCCCcceEEEECcceEEEEEcHHHHHHHHhhChHhhhh
Confidence 7889999999999999999999999999999999999999999999999987654
No 17
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=99.77 E-value=2.4e-18 Score=167.24 Aligned_cols=151 Identities=18% Similarity=0.237 Sum_probs=137.9
Q ss_pred hhHHhhhhccccccCCHHHHHHHHhccccccccCCCeEEEeCCCCCeEEEEEeceEEEEEe-eCCceEEEEEecCCCeee
Q 006573 373 LFYSLMDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVL-KNGVEQVVGEAKTGEICG 451 (640)
Q Consensus 373 ~~~~~l~~~~~f~~ls~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~v~~~-~~g~~~~~~~l~~G~~fG 451 (640)
...++++++|+|..++++.++.+...++...|++|++|+.+|++++.+|+|.+|.|+++.. .+|++.++..+++|++||
T Consensus 8 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G 87 (237)
T 3fx3_A 8 AQKAIARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMTPTGSEAVVSVFTRGESFG 87 (237)
T ss_dssp HHHHHHTTSHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEECTTSCEEEEEEEETTEEEC
T ss_pred HHHHHHhCCHhhccCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEeCCCCEec
Confidence 4457889999999999999999999999999999999999999999999999999999884 678889999999999999
Q ss_pred chhhhcCCCeeeEEEEccceEEEEeeHHHHHHHHHhchhhHHHHHHHHHHHHHcccchhhhhhhhhhHhhhh
Q 006573 452 EIGVLCYRPQLFTVRTKRLSQLLRLNRTTFLNIVQANVGDGTIIMNNLLQHLKDLKDPIMEGVLLETENMLA 523 (640)
Q Consensus 452 e~~l~~~~~~~~~~~a~~~~~v~~i~~~~f~~ll~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~rl~ 523 (640)
+.+++.+.|+.++++|.++|+++.|++++|.+++.++|++...+.+.+..++....+........+..+|++
T Consensus 88 ~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~Rl~ 159 (237)
T 3fx3_A 88 EAVALRNTPYPVSAEAVTPCEVMHIPSPVFVSLMRRDPEICISILATTFGHLHSLVAQLEQLKAQTGAQRVA 159 (237)
T ss_dssp HHHHHHTCCCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_pred hHHHhcCCCCCceEEECCceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999998877666666666666666665
No 18
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=99.77 E-value=2.1e-18 Score=166.41 Aligned_cols=150 Identities=15% Similarity=0.300 Sum_probs=139.0
Q ss_pred HHhhhhccccccCCHHHHHHHHhccccccccCCCeEEEeCCCCCeEEEEEeceEEEEEe-eCCceEEEEEecCCCeeech
Q 006573 375 YSLMDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVL-KNGVEQVVGEAKTGEICGEI 453 (640)
Q Consensus 375 ~~~l~~~~~f~~ls~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~v~~~-~~g~~~~~~~l~~G~~fGe~ 453 (640)
.++++++|+|..++++.++.++..++...|++|++|+++||+++.+|+|.+|.|+++.. .+|++.++..+.+|++||+.
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~ 84 (227)
T 3d0s_A 5 DEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFGEL 84 (227)
T ss_dssp HHHHTTSSTTSSCCSSTTHHHHTTSCEEEECTTCEEECTTCCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESCH
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCeEEEeCCCCEEEcCCCcCCEEEEEEeeEEEEEEECCCCcEEEEEEecCCCEEeeH
Confidence 45789999999999999999999999999999999999999999999999999999875 57888899999999999999
Q ss_pred hhhcCCCeeeEEEEccceEEEEeeHHHHHHHHHhchhhHHHHHHHHHHHHHcccchhhhhhhhhhHhhhhc
Q 006573 454 GVLCYRPQLFTVRTKRLSQLLRLNRTTFLNIVQANVGDGTIIMNNLLQHLKDLKDPIMEGVLLETENMLAR 524 (640)
Q Consensus 454 ~l~~~~~~~~~~~a~~~~~v~~i~~~~f~~ll~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~rl~~ 524 (640)
+++.+.|+.++++|.++|+++.|++++|.++++++|++...+.+.+..++.............+..+|++.
T Consensus 85 ~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~Rl~~ 155 (227)
T 3d0s_A 85 SIFDPGPRTSSATTITEVRAVSMDRDALRSWIADRPEISEQLLRVLARRLRRTNNNLADLIFTDVPGRVAK 155 (227)
T ss_dssp HHHSCSCCSSEEEESSCEEEEEEEHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHcCCCCceeEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998887777777777777777763
No 19
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=99.76 E-value=7.7e-18 Score=161.64 Aligned_cols=149 Identities=9% Similarity=0.062 Sum_probs=135.6
Q ss_pred HhhhhccccccCCHHHHHHHHhccccccccCCCeEEEeCCCCCeEEEEEeceEEEEEe-eCCceEEEEEecCCCe--eec
Q 006573 376 SLMDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVL-KNGVEQVVGEAKTGEI--CGE 452 (640)
Q Consensus 376 ~~l~~~~~f~~ls~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~v~~~-~~g~~~~~~~l~~G~~--fGe 452 (640)
++++++|+|..++++.++.+...++...|++|++|+++||+++.+|+|.+|.|+++.. ++|++.++..+++|++ ||+
T Consensus 3 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~~~g~ 82 (220)
T 3dv8_A 3 SFENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILSDEGREITLYRLFDMDMCLLSA 82 (220)
T ss_dssp --CCSCGGGGTSCHHHHHHHHTTCEEEEECTTCEEEEGGGCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESGGG
T ss_pred chHHhChhhhcCCHHHHHHHHhhCceEEeCCCCEEECCCCCcceEEEEEeceEEEEEECCCCCEEEEEecCCCCeeehhH
Confidence 5788999999999999999999999999999999999999999999999999999874 6788889999999999 789
Q ss_pred hhhhcCCCeeeEEEEccceEEEEeeHHHHHHHHHhchhhHHHHHHHHHHHHHcccchhhhhhhhhhHhhhhc
Q 006573 453 IGVLCYRPQLFTVRTKRLSQLLRLNRTTFLNIVQANVGDGTIIMNNLLQHLKDLKDPIMEGVLLETENMLAR 524 (640)
Q Consensus 453 ~~l~~~~~~~~~~~a~~~~~v~~i~~~~f~~ll~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~rl~~ 524 (640)
.+++.+.|+.++++|.++|+++.+++++|.+++.++|++...+.+.+..++.............+.++|++.
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Rl~~ 154 (220)
T 3dv8_A 83 SCIMRSIQFEVTIEAEKDTDLWIIPAEIYKGIMKDSAPVANYTNELMATRFSDVMWLIEQIMWKSLDKRVAS 154 (220)
T ss_dssp GGGCTTCCCCCEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHhCCCCCceEEEEeeeeEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999888777666666666777777663
No 20
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=99.75 E-value=7e-18 Score=163.35 Aligned_cols=150 Identities=10% Similarity=0.143 Sum_probs=134.9
Q ss_pred hHHhhhhccccccCCHHHHHHHHhc--cccccccCCCeEEEeCCCCCeEEEEEeceEEEEE-eeCCceEEEEEecCCCee
Q 006573 374 FYSLMDKVYLFRGVSNDLLFQLVSE--MKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLV-LKNGVEQVVGEAKTGEIC 450 (640)
Q Consensus 374 ~~~~l~~~~~f~~ls~~~l~~l~~~--~~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~v~~-~~~g~~~~~~~l~~G~~f 450 (640)
..++++++|+|..++++.++.++.. ++...|++|++|+++||+++.+|+|.+|.|+++. ..+|++.++..+.+|++|
T Consensus 16 ~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~l~~~~~G~~f 95 (232)
T 1zyb_A 16 MFDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYTVIEQIEAPYLI 95 (232)
T ss_dssp HHTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECGGGSCEEEEEEESSEEE
T ss_pred HHHHHhcCccccCCCHHHHHHHHhhCCcEEEEECCCCEEECCCCcccEEEEEEeeEEEEEEECCCCCEEEEEEccCCCee
Confidence 4467889999999999999999998 9999999999999999999999999999999986 467888899999999999
Q ss_pred echhhhcCCC-eeeEEEEccceEEEEeeHHHHHHHHHhchhhHHHHHHHHHHHHHcccchhhhhhhhhhHhhhh
Q 006573 451 GEIGVLCYRP-QLFTVRTKRLSQLLRLNRTTFLNIVQANVGDGTIIMNNLLQHLKDLKDPIMEGVLLETENMLA 523 (640)
Q Consensus 451 Ge~~l~~~~~-~~~~~~a~~~~~v~~i~~~~f~~ll~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~rl~ 523 (640)
|+.+++.+.+ +.++++|.++|+++.|++++|.++++++|++...+.+.+..++....+........+..+|++
T Consensus 96 G~~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~~~~~~~~l~~~~~~~Rl~ 169 (232)
T 1zyb_A 96 EPQSLFGMNTNYASSYVAHTEVHTVCISKAFVLSDLFRYDIFRLNYMNIVSNRAQNLYSRLWDEPTLDLKSKII 169 (232)
T ss_dssp CGGGGSSSCCBCSSEEEESSCEEEEEEEHHHHHHTGGGSHHHHHHHHHHHHHHHHHHHHHTTSCCCCSHHHHHH
T ss_pred eehHHhCCCCCCceEEEEccceEEEEEEHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHH
Confidence 9999999988 999999999999999999999999999999999999999988877655555555556666655
No 21
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=99.75 E-value=7.9e-18 Score=162.87 Aligned_cols=147 Identities=21% Similarity=0.279 Sum_probs=131.7
Q ss_pred HHhhhhccccccCCHHHHHHHHhccccccccCCCeEEEeCCCCCeEEEEEeceEEEEEe-eCCceEEEEEecCCCeeech
Q 006573 375 YSLMDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVL-KNGVEQVVGEAKTGEICGEI 453 (640)
Q Consensus 375 ~~~l~~~~~f~~ls~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~v~~~-~~g~~~~~~~l~~G~~fGe~ 453 (640)
.++++++|+|..++++.++.++..++...|++|++|+.+|++++.+|+|.+|.|+++.. .+|++.++..+.+|++||+.
T Consensus 5 ~~~L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~ 84 (231)
T 3e97_A 5 LDDLKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSLGGRERVLGDIYAPGVVGET 84 (231)
T ss_dssp HHHHHTSGGGTTCCHHHHHHHHHTEEEEEECTTCBCCCTTCTTTCEEEECSSEEEEEEECC--CEEEEEEEESSEEESTT
T ss_pred HHHHhcChhhccCCHHHHHHHHHhcEEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEECCCCceEEEEecCCCCEEeeH
Confidence 46789999999999999999999999999999999999999999999999999999875 67888999999999999999
Q ss_pred hhhcCCCeeeEEEEccceEEEEeeHHHHHHHHHhchhhHHHHHHHHHHHHHcccchhhhhhhhhhH-hhhh
Q 006573 454 GVLCYRPQLFTVRTKRLSQLLRLNRTTFLNIVQANVGDGTIIMNNLLQHLKDLKDPIMEGVLLETE-NMLA 523 (640)
Q Consensus 454 ~l~~~~~~~~~~~a~~~~~v~~i~~~~f~~ll~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-~rl~ 523 (640)
+++.+.|+.++++|.++|+++.|++++|.+++.++|++...+.+.+..++....+... ...+.. +|++
T Consensus 85 ~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~--~~~~~~~~Rl~ 153 (231)
T 3e97_A 85 AVLAHQERSASVRALTPVRTLMLHREHFELILRRHPRVLWNLAEMLARRVTFLNDELI--AFGQNTEAALT 153 (231)
T ss_dssp TTTCCCCCCEEEEESSCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH--HHHHCHHHHHH
T ss_pred HHhCCCCceEEEEECCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH--HhccChHHHHH
Confidence 9999999999999999999999999999999999999999999999988876655444 444555 5655
No 22
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=99.74 E-value=3.7e-18 Score=164.69 Aligned_cols=151 Identities=21% Similarity=0.262 Sum_probs=138.2
Q ss_pred hHHhhhhccccccCCHHHHHHHHhccccccccCCCeEEEeCCCCCeEEEEEeceEEEEE-eeCCceEEEEEecCCCeeec
Q 006573 374 FYSLMDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLV-LKNGVEQVVGEAKTGEICGE 452 (640)
Q Consensus 374 ~~~~l~~~~~f~~ls~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~v~~-~~~g~~~~~~~l~~G~~fGe 452 (640)
..++++++|+|..++++.++.+...++...|++|++|+.+|++++.+|+|.+|.|+++. ..+|++.++..+++|++||+
T Consensus 7 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~ 86 (227)
T 3dkw_A 7 HQQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAE 86 (227)
T ss_dssp SHHHHTTSTTTSSSCHHHHHHHHTSCEEEECCTTEEEECTTSBCCEEEEEEESCEECCBCCGGGCCBCCCEECTTEEESC
T ss_pred HHHHHhcChhhcCCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeee
Confidence 34688999999999999999999999999999999999999999999999999999987 46788889999999999999
Q ss_pred hhhhcCCC-eeeEEEEccceEEEEeeHHHHHHHHHhchhhHHHHHHHHHHHHHcccchhhhhhhhhhHhhhhc
Q 006573 453 IGVLCYRP-QLFTVRTKRLSQLLRLNRTTFLNIVQANVGDGTIIMNNLLQHLKDLKDPIMEGVLLETENMLAR 524 (640)
Q Consensus 453 ~~l~~~~~-~~~~~~a~~~~~v~~i~~~~f~~ll~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~rl~~ 524 (640)
.+++.+.| +.++++|.++|+++.+++++|.++++++|++...+.+.+..++.............+.++|++.
T Consensus 87 ~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Rl~~ 159 (227)
T 3dkw_A 87 AMMFMDTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLSTRLHQRIDEIETLSLKNATHRVVR 159 (227)
T ss_dssp TTTTTTCSBCSSCEEESSCCEEEEEESHHHHHHHSSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCCCceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 99999999 9999999999999999999999999999999999999999988877666666666777777763
No 23
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=99.74 E-value=2.3e-17 Score=159.46 Aligned_cols=150 Identities=16% Similarity=0.260 Sum_probs=128.0
Q ss_pred HHhhhhccccccCCHHHHHHHHhccccccccCCCeEEEeCCCCCeEEEEEeceEEEEE-eeCCceEEEEEecCCCeeech
Q 006573 375 YSLMDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLV-LKNGVEQVVGEAKTGEICGEI 453 (640)
Q Consensus 375 ~~~l~~~~~f~~ls~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~v~~-~~~g~~~~~~~l~~G~~fGe~ 453 (640)
...+++.++|..++++.++.+...++...|++|++|+.+||+++.+|+|.+|.|+++. ..+|++.++..+.+|++||+.
T Consensus 10 ~~~lr~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~ 89 (230)
T 3iwz_A 10 TTTVRNATPSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEEDDDRELVLGYFGSGEFVGEM 89 (230)
T ss_dssp ------------CCHHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESCG
T ss_pred hhhhhhcchhccCCHHHHHHHHHhCeEEEeCCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEEeh
Confidence 4578889999999999999999999999999999999999999999999999999987 467889999999999999999
Q ss_pred hhhcCC-CeeeEEEEccceEEEEeeHHHHHHHHHhc-----hhhHHHHHHHHHHHHHcccchhhhhhhhhhHhhhhc
Q 006573 454 GVLCYR-PQLFTVRTKRLSQLLRLNRTTFLNIVQAN-----VGDGTIIMNNLLQHLKDLKDPIMEGVLLETENMLAR 524 (640)
Q Consensus 454 ~l~~~~-~~~~~~~a~~~~~v~~i~~~~f~~ll~~~-----~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~rl~~ 524 (640)
+++.+. |+.++++|.++|+++.|++++|.++++++ |++...+.+.+..++.............+..+|++.
T Consensus 90 ~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~~~~~~p~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~Rl~~ 166 (230)
T 3iwz_A 90 GLFIESDTREVILRTRTQCELAEISYERLQQLFQTSLSPDAPRILYAIGVQLSKRLLDTTRKASRLAFLDVTDRIVR 166 (230)
T ss_dssp GGTSCCSBCCSEEEESSCEEEEEEEHHHHHHHHHTTTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred hhhcCCCCceeEEEEcCcEEEEEEeHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 999875 79999999999999999999999999999 999999999999998887777777777788887763
No 24
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=99.74 E-value=7.1e-18 Score=143.70 Aligned_cols=63 Identities=24% Similarity=0.436 Sum_probs=57.9
Q ss_pred chHHHHHHHHHhhhhhhcccccCCcccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q 006573 246 SLWIRYVTSMYWSITTLTTVGYGDLHPVNTREMVFDILFMLFNLGLTAYLIGNMTNLVVHGTS 308 (640)
Q Consensus 246 ~~~~~y~~s~yw~~~t~ttvGygd~~p~t~~e~~~~i~~~i~g~~~~a~~i~~i~~~~~~~~~ 308 (640)
+.+.+|.+|+||+++|+||+||||++|.|+.+++++++++++|+.+++++++.+++.+.+..+
T Consensus 57 ~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~~~ 119 (122)
T 2ih3_C 57 AQLITYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQ 119 (122)
T ss_dssp CCCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccCccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344679999999999999999999999999999999999999999999999999999876543
No 25
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=99.74 E-value=1.3e-17 Score=161.59 Aligned_cols=145 Identities=13% Similarity=0.101 Sum_probs=131.5
Q ss_pred hccccccCCHHHHHHHHhccccccccCCCeEEEeCCCCCeEEEEEeceEEEEEe-eCCceEEEEEecCCCeeechhhhcC
Q 006573 380 KVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVL-KNGVEQVVGEAKTGEICGEIGVLCY 458 (640)
Q Consensus 380 ~~~~f~~ls~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~v~~~-~~g~~~~~~~l~~G~~fGe~~l~~~ 458 (640)
.+|+|+.++++.++.+...++...|++|++|+++||+++.+|+|.+|.|+++.. .+|++.++..+.+|++||+.+++.+
T Consensus 14 ~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~~~~ 93 (232)
T 2gau_A 14 LRDVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHISRIVKPGQFFGMRPYFAE 93 (232)
T ss_dssp SHHHHTTCCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-----CCCEEEEECTTCEESHHHHHHT
T ss_pred ccHhhhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEeCCCCEeeeehhhCC
Confidence 578999999999999999999999999999999999999999999999999864 5688889999999999999999999
Q ss_pred CCeeeEEEEccceEEEEeeHHHHHHHHHhchhhHHHHHHHHHHHHHcccchhhhhhhhhhHhhhhc
Q 006573 459 RPQLFTVRTKRLSQLLRLNRTTFLNIVQANVGDGTIIMNNLLQHLKDLKDPIMEGVLLETENMLAR 524 (640)
Q Consensus 459 ~~~~~~~~a~~~~~v~~i~~~~f~~ll~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~rl~~ 524 (640)
.|+.++++|.++|+++.|++++|.++++++|++...+...+..++....+........+..+|++.
T Consensus 94 ~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~Rl~~ 159 (232)
T 2gau_A 94 ETCSSTAIAVENSKVLAIPVEAIEALLKGNTSFCRYFLKALAKELGYAERRTVTLTQKHVRGRLAE 159 (232)
T ss_dssp SCCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred CCcceEEEEecceEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 999999999999999999999999999999999999999999998887777777777777777763
No 26
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=99.73 E-value=1.9e-17 Score=146.17 Aligned_cols=127 Identities=20% Similarity=0.298 Sum_probs=116.5
Q ss_pred hHHhhhhccccccCCHHHHHHHHhccccccccCCCeEEEeCCCCCeEEEEEeceEEEEEeeCCceEEEEEecCCCeeech
Q 006573 374 FYSLMDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQVVGEAKTGEICGEI 453 (640)
Q Consensus 374 ~~~~l~~~~~f~~ls~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~ 453 (640)
..++++++|+|+.++++.++.++..++...|++|++|+++|++++.+|+|.+|.|+++... ...+.+|++||+.
T Consensus 9 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~------~~~~~~G~~~G~~ 82 (138)
T 1vp6_A 9 NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN------PVELGPGAFFGEM 82 (138)
T ss_dssp HHHHHTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECSSS------CEEECTTCEECHH
T ss_pred HHHHHHhChhhhcCCHHHHHHHHHhhcEEEeCCCCEEEeCCCCcceEEEEEeeEEEEEeCC------cceECCCCEeeeh
Confidence 4467899999999999999999999999999999999999999999999999999997532 2478999999999
Q ss_pred hhhcCCCeeeEEEEccceEEEEeeHHHHHHHHHhchhhHHHHHHHHHHHHHcc
Q 006573 454 GVLCYRPQLFTVRTKRLSQLLRLNRTTFLNIVQANVGDGTIIMNNLLQHLKDL 506 (640)
Q Consensus 454 ~l~~~~~~~~~~~a~~~~~v~~i~~~~f~~ll~~~~~~~~~~~~~l~~~l~~~ 506 (640)
+++.+.++.++++|.++|+++.|++++|.++++++|++...+.+.+.+++...
T Consensus 83 ~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~r~~~~ 135 (138)
T 1vp6_A 83 ALISGEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALERRGAA 135 (138)
T ss_dssp HHHHCCCCSSCEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHCC--
T ss_pred HhccCCCceeEEEECCCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999999999888887553
No 27
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=99.73 E-value=4.2e-19 Score=177.09 Aligned_cols=219 Identities=11% Similarity=0.186 Sum_probs=142.4
Q ss_pred ccccCCCeEEcCCChhHHHHHHHHHHHHHHHHHHhhhheec--ccCCCCCeeehhhHhhHHHhhhheeeeeEEEEeCCce
Q 006573 48 RRVKLRRFIVSPYDRRYRVWETYLVLLVIYTAWASPFEFGF--LRKPQRPLSVIDNVVNGFFAVDIILTFFVAYLDKATY 125 (640)
Q Consensus 48 ~~~~~~~~~~~P~s~~~~~w~~~~~~~~~~~~~~~p~~~~f--~~~~~~~~~~i~~~~~~~f~~d~~l~f~t~~~~~~~~ 125 (640)
.|.+++..+.+ ..++.++.++++.+++.+.++..- .......+..+|.++.++|++|+++|+..+
T Consensus 19 ~r~~~~~i~~~------~~f~~~i~~li~l~~i~~~~~~~~~~~~~~~~~l~~~e~~~~~iF~~E~~lrl~~~------- 85 (285)
T 3rvy_A 19 MYLRITNIVES------SFFTKFIIYLIVLNGITMGLETSKTFMQSFGVYTTLFNQIVITIFTIEIILRIYVH------- 85 (285)
T ss_dssp CHHHHHHHHTS------HHHHHHHHHHHHHHHHHHHHTTCTTHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTT-------
T ss_pred HHHHHHHHHcC------HHHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 35555555543 358888888888888887766521 111223567799999999999999998543
Q ss_pred EEEeChhHHHHHHhhh-hhhhHhHhhccHHHHhhhCCCCccchhhhhHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHH
Q 006573 126 LLVDCPKQIAWKYASS-WLVFDVISTIPSELAQKISPKPLQSYGLFNMLRLWRLRRVSALFSRLEKDRNYNYFWVRCCKL 204 (640)
Q Consensus 126 ~~v~~~~~i~~~Yl~~-~f~~Dlis~lP~~~~~~~~~~~~~~~~~l~~lrllrl~r~~~~~~~l~~~~~~~~~~~~l~~l 204 (640)
+ ++|+++ |.++|+++++|..+.. ....+.++++|++|++|+.|..+.++.+-.....+. -.+..+
T Consensus 86 -----~----~~y~~~~wn~~Dl~~v~~~~i~~---~~~~~~lr~~RilR~lrl~~~~~~l~~l~~~l~~~~--~~l~~~ 151 (285)
T 3rvy_A 86 -----R----ISFFKDPWSLFDFFVVAISLVPT---SSGFEILRVLRVLRLFRLVTAVPQMRKIVSALISVI--PGMLSV 151 (285)
T ss_dssp -----G----GGGGGCHHHHHHHHHHHHHHSCS---SSSCTHHHHHGGGGGGHHHHSSTTHHHHHHHHHHHG--GGGHHH
T ss_pred -----h----HHHHcCChHHhHHHHHHHHHHcc---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence 3 678876 7899999998875421 112233444444444444443333333333322221 134444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCccCcchHHHHHHHHHhhhhhhcccccC-Ccc-cCCchh----h
Q 006573 205 IFVTLFAVHCAGCFYYLLAARYHNPERTWIGASLGQNFLEKSLWIRYVTSMYWSITTLTTVGYG-DLH-PVNTRE----M 278 (640)
Q Consensus 205 ~~~~~~~~h~~ac~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~y~~s~yw~~~t~ttvGyg-d~~-p~t~~e----~ 278 (640)
++.++++...+|++-+.+... ..++.++++++|+||++.|+||+||| |+. |.+..+ +
T Consensus 152 ~~~~~~~~~~fa~~g~~~f~~-----------------~~~~~F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~ 214 (285)
T 3rvy_A 152 IALMTLFFYIFAIMATQLFGE-----------------RFPEWFGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWV 214 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-----------------TCHHHHSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHhCc-----------------ccccccCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHh
Confidence 555555555566655544421 23456889999999999999999999 985 877755 8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhh
Q 006573 279 VFDILFMLFNLGLTAYLIGNMTNLVVHGTSRT 310 (640)
Q Consensus 279 ~~~i~~~i~g~~~~a~~i~~i~~~~~~~~~~~ 310 (640)
.+++++++.|++++++++|.+.+.+....++.
T Consensus 215 ~f~~~~~i~~~~~lnl~~aii~~~f~~~~~~~ 246 (285)
T 3rvy_A 215 FFIPFIFVVTFVMINLVVAICVDAMAILNQKE 246 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999987665443
No 28
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=99.71 E-value=1e-17 Score=145.73 Aligned_cols=93 Identities=22% Similarity=0.405 Sum_probs=56.7
Q ss_pred HHHHHHHhhhhhhcccccCCcccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHhCCC
Q 006573 250 RYVTSMYWSITTLTTVGYGDLHPVNTREMVFDILFMLFNLGLTAYLIGNMTNLVVHGTSRTRKFRDTIQAASSFAQRNQL 329 (640)
Q Consensus 250 ~y~~s~yw~~~t~ttvGygd~~p~t~~e~~~~i~~~i~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 329 (640)
+|++|+||+++|||||||||++|.|..|++++++++++|+.+++++++.+++.+......+.+.++..+..+...+..++
T Consensus 43 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 122 (137)
T 4h33_A 43 NYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCKKPTNSSTQRANKITQLISETPDL 122 (137)
T ss_dssp SHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTTC--------------------
T ss_pred CHHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 68999999999999999999999999999999999999999999999999998877655554443333323333344555
Q ss_pred CHHHHHHHHHHHH
Q 006573 330 PIRLQDQMLAHLC 342 (640)
Q Consensus 330 ~~~l~~rv~~y~~ 342 (640)
+++.+..++++++
T Consensus 123 ~~~~i~~l~~~l~ 135 (137)
T 4h33_A 123 TKEEIAVVEQFLT 135 (137)
T ss_dssp -------------
T ss_pred cHHHHHHHHHHHh
Confidence 5555555555543
No 29
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=99.71 E-value=1e-16 Score=152.48 Aligned_cols=143 Identities=20% Similarity=0.305 Sum_probs=127.9
Q ss_pred cccccCCHHHHHHHHhccccccccCCCeEEEeCCCCCeEEEEEeceEEEEEe-eCCceEEEEEecCCCeeechhhhcCC-
Q 006573 382 YLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVL-KNGVEQVVGEAKTGEICGEIGVLCYR- 459 (640)
Q Consensus 382 ~~f~~ls~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~v~~~-~~g~~~~~~~l~~G~~fGe~~l~~~~- 459 (640)
++++.+|++.++.+...++...|++|++|+.+|++++.+|+|.+|.|+++.. .+|++.++..+.+|++||+.+++.+.
T Consensus 2 ~l~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~~~~~ 81 (210)
T 3ryp_A 2 VLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQ 81 (210)
T ss_dssp -----CCCHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTCCEEEEEEEETTCEESCTTTTSTTC
T ss_pred cCCCcCCHHHHHHHHHhcEEEEeCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeeeHHHhcCCC
Confidence 3567799999999999999999999999999999999999999999999875 77889999999999999999999988
Q ss_pred CeeeEEEEccceEEEEeeHHHHHHHHHhchhhHHHHHHHHHHHHHcccchhhhhhhhhhHhhhhc
Q 006573 460 PQLFTVRTKRLSQLLRLNRTTFLNIVQANVGDGTIIMNNLLQHLKDLKDPIMEGVLLETENMLAR 524 (640)
Q Consensus 460 ~~~~~~~a~~~~~v~~i~~~~f~~ll~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~rl~~ 524 (640)
|+.++++|.++|+++.+++++|.++++++|++...+.+.+..++.............+..+|++.
T Consensus 82 ~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Rl~~ 146 (210)
T 3ryp_A 82 ERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQ 146 (210)
T ss_dssp BCSSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred CceEEEEECCcEEEEEEcHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHH
Confidence 89999999999999999999999999999999999999999998887776667777777777763
No 30
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=99.70 E-value=8e-17 Score=145.13 Aligned_cols=119 Identities=21% Similarity=0.310 Sum_probs=109.2
Q ss_pred hhhHHhhhhccccccCCHHHHHHHHhccccccccCCCeEEEeCCCCCeEEEEEeceEEEEEeeCCceEEEEEecCCCeee
Q 006573 372 YLFYSLMDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQVVGEAKTGEICG 451 (640)
Q Consensus 372 ~~~~~~l~~~~~f~~ls~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fG 451 (640)
....++++++++|..++++.++.++..++...|++|++|+++|+.++.+|+|.+|.|+++. +|+ .+..+.+|++||
T Consensus 34 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~--~~~--~~~~~~~G~~fG 109 (154)
T 3pna_A 34 AALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV--NNE--WATSVGEGGSFG 109 (154)
T ss_dssp HHHHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEE--TTE--EEEEECTTCEEC
T ss_pred HHHHHHHHhChhhhhCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEecEEEEEE--CCE--EEEEecCCCEee
Confidence 3456788999999999999999999999999999999999999999999999999999987 453 678899999999
Q ss_pred chhhhcCCCeeeEEEEccceEEEEeeHHHHHHHHHhchhhHHH
Q 006573 452 EIGVLCYRPQLFTVRTKRLSQLLRLNRTTFLNIVQANVGDGTI 494 (640)
Q Consensus 452 e~~l~~~~~~~~~~~a~~~~~v~~i~~~~f~~ll~~~~~~~~~ 494 (640)
+.+++.+.++.++++|.++|+++.|++++|.++++++|.....
T Consensus 110 e~~~~~~~~~~~~v~A~~~~~~~~i~~~~~~~ll~~~~~~~~~ 152 (154)
T 3pna_A 110 ELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRK 152 (154)
T ss_dssp CHHHHHCCCCSSEEEESSCEEEEEEEHHHHHHHTHHHHHHC--
T ss_pred ehHhhcCCCcceEEEECcceEEEEEeHHHHHHHHHhChHHHhh
Confidence 9999999999999999999999999999999999999876654
No 31
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=99.70 E-value=1.7e-16 Score=150.67 Aligned_cols=137 Identities=16% Similarity=0.303 Sum_probs=124.0
Q ss_pred CCHHHHHHHHhccccccccCCCeEEEeCCCCCeEEEEEeceEEEEEe-eCCceEEEEEecCCCeeechhhhcCC----Ce
Q 006573 387 VSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVL-KNGVEQVVGEAKTGEICGEIGVLCYR----PQ 461 (640)
Q Consensus 387 ls~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~v~~~-~~g~~~~~~~l~~G~~fGe~~l~~~~----~~ 461 (640)
+|++.++.++..++...|++|++|+.+||+++.+|+|.+|.|+++.. .+|++.++..+.+|++||+.+++.+. |+
T Consensus 1 l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~~~~~~~~~~~~~ 80 (207)
T 2oz6_A 1 MKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFEKEGSEQER 80 (207)
T ss_dssp CCHHHHHHHHHSSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEESCTTTCC-----CBC
T ss_pred CCHHHHHHHHhhcceEEECCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCCcccHHHhcCCCCCCCc
Confidence 58899999999999999999999999999999999999999999874 67888999999999999999999988 89
Q ss_pred eeEEEEccceEEEEeeHHHHHHHHHhchhhHHHHHHHHHHHHHcccchhhhhhhhhhHhhhh
Q 006573 462 LFTVRTKRLSQLLRLNRTTFLNIVQANVGDGTIIMNNLLQHLKDLKDPIMEGVLLETENMLA 523 (640)
Q Consensus 462 ~~~~~a~~~~~v~~i~~~~f~~ll~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~rl~ 523 (640)
.++++|.++|+++.|++++|.++++++|++...+.+.+..++....+........+..+|++
T Consensus 81 ~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~Rl~ 142 (207)
T 2oz6_A 81 SAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGSQMADRLRKTTRKVGDLAFLDVTGRVA 142 (207)
T ss_dssp CSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred ceEEEECCcEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 99999999999999999999999999999999999999988887766666666677777765
No 32
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=99.70 E-value=4.2e-17 Score=156.49 Aligned_cols=143 Identities=15% Similarity=0.128 Sum_probs=131.7
Q ss_pred HHhhhhccccccCCHHHHHHHHhccccccccCCCeEEEeCCCCCeEEEEEeceEEEEEeeCCceEEEEEecCCCeeechh
Q 006573 375 YSLMDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQVVGEAKTGEICGEIG 454 (640)
Q Consensus 375 ~~~l~~~~~f~~ls~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~ 454 (640)
..+++++|+|..++++.++.+...++...|++|++|+.+||+++.+|+|.+|.|+++...+|++.++..+.+|++||+
T Consensus 3 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~~~~~~~G~~~G~-- 80 (220)
T 2fmy_A 3 QMRLTDTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRVRVYLAYEDKEFTLAILEAGDIFCT-- 80 (220)
T ss_dssp TTCSCSSCHHHHTTSGGGTTTGGGSEEEEECTTCEEECTTCSSCEEEEEEESEEEEEEECSSCEEEEEEEETTCEEES--
T ss_pred hhhhhcChhhhcCCHHHHHHHHHhhheeEeCCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEEEEEcCCCCEeCC--
Confidence 356788999999999999999999999999999999999999999999999999997667899999999999999999
Q ss_pred hhcCCCeeeEEEEccceEEEEeeHHHHHHHHHhchhhHHHHHHHHHHHHHcccchhhhhhhhhhHhhhhc
Q 006573 455 VLCYRPQLFTVRTKRLSQLLRLNRTTFLNIVQANVGDGTIIMNNLLQHLKDLKDPIMEGVLLETENMLAR 524 (640)
Q Consensus 455 l~~~~~~~~~~~a~~~~~v~~i~~~~f~~ll~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~rl~~ 524 (640)
|+.++++|.++|+++.|++++|.++++++|++...+...+..++....+........+..+|++.
T Consensus 81 -----~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Rl~~ 145 (220)
T 2fmy_A 81 -----HTRAFIQAMEDTTILYTDIRNFQNIVVEFPAFSLNMVKVLGDLLKNSLTIINGLVFKDARLRLAE 145 (220)
T ss_dssp -----CSSSEEEESSSEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred -----ccceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 78899999999999999999999999999999999999999998887777777777777777763
No 33
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=99.70 E-value=1.5e-17 Score=146.76 Aligned_cols=118 Identities=17% Similarity=0.262 Sum_probs=107.5
Q ss_pred HhhhhccccccCCHHHHHHHHhccccccccCCCeEEEeCCCCCeEEEEEeceEEEEEeeCCceEEEE--EecCCCeeech
Q 006573 376 SLMDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQVVG--EAKTGEICGEI 453 (640)
Q Consensus 376 ~~l~~~~~f~~ls~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~--~l~~G~~fGe~ 453 (640)
++++++++|..++++.++.++..++.+.|++|++|+++||.++.+|+|.+|.|++...++|++.++. .+.+|++||+.
T Consensus 6 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~ 85 (137)
T 1wgp_A 6 SGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLKEGDFCGDE 85 (137)
T ss_dssp CSCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEECCSSCSSSSSCEEECCTTCBSSTH
T ss_pred HHHHcCcchhhCCHHHHHHHHHHheEEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEEcCCCcceeeeeeeecCCCEecHH
Confidence 5688999999999999999999999999999999999999999999999999997655678776666 99999999999
Q ss_pred hh---hcCCC------eeeEEEEccceEEEEeeHHHHHHHHHhchhhHH
Q 006573 454 GV---LCYRP------QLFTVRTKRLSQLLRLNRTTFLNIVQANVGDGT 493 (640)
Q Consensus 454 ~l---~~~~~------~~~~~~a~~~~~v~~i~~~~f~~ll~~~~~~~~ 493 (640)
++ +.+.+ +.++++|.++|+++.|++++|.++++++|++..
T Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~ 134 (137)
T 1wgp_A 86 LLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFRRSGP 134 (137)
T ss_dssp HHHHHHCSSCCSSSCBCSSEEEESSCBEEEEEEHHHHHHHHHHHCCCTT
T ss_pred HHHHHhccccccccccceeEEEEeEEEEEEEECHHHHHHHHHHCHhhHh
Confidence 85 77774 578999999999999999999999999998653
No 34
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.68 E-value=1.4e-16 Score=160.46 Aligned_cols=137 Identities=15% Similarity=0.192 Sum_probs=128.0
Q ss_pred hhhHHhhhhccccccCCHHHHHHHHhccccccccCCCeEEEeCCCCCeEEEEEeceEEEEEee--CCceEEEEEecCCCe
Q 006573 372 YLFYSLMDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLK--NGVEQVVGEAKTGEI 449 (640)
Q Consensus 372 ~~~~~~l~~~~~f~~ls~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~v~~~~--~g~~~~~~~l~~G~~ 449 (640)
.....++++.++|..++++.+..++..++...|++|++|+++||.++.+|+|.+|.|+++... +|++..+..+++|++
T Consensus 153 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~~~~g~~~~~~~l~~G~~ 232 (299)
T 3shr_A 153 TEYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNEDPVFLRTLGKGDW 232 (299)
T ss_dssp HHHHHHHTTSHHHHHSCHHHHHHHTTTCEEEEECTTCEEECTTCEECEEEEEEESEEEEEECCSSSCCCEEEEEEETTCE
T ss_pred HHHHHHHhhCHHhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCCEEEEEEeeEEEEEEecCCCCcceEEEEcCCCCE
Confidence 345678889999999999999999999999999999999999999999999999999998854 788889999999999
Q ss_pred eechhhhcCCCeeeEEEEccceEEEEeeHHHHHHHHHhchhhHHHHHHHHHHHHHcccc
Q 006573 450 CGEIGVLCYRPQLFTVRTKRLSQLLRLNRTTFLNIVQANVGDGTIIMNNLLQHLKDLKD 508 (640)
Q Consensus 450 fGe~~l~~~~~~~~~~~a~~~~~v~~i~~~~f~~ll~~~~~~~~~~~~~l~~~l~~~~~ 508 (640)
|||.+++.+.|+.++++|.++|+++.|++++|.+++..+|++...+++.+.++++...+
T Consensus 233 fGe~~ll~~~~~~~tv~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~r~~~~~~ 291 (299)
T 3shr_A 233 FGEKALQGEDVRTANVIAAEAVTCLVIDRDSFKHLIGGLDDVSNKAYEDAEAKAKYEAE 291 (299)
T ss_dssp ECGGGGSSSEECSSEEEESSSEEEEEEEHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHH
T ss_pred eChHHHhCCCCcceEEEECCCEEEEEEeHHHHHHHHccHHHHHHHHHHHHhhhhhcchh
Confidence 99999999999999999999999999999999999999999999999999998876543
No 35
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=99.68 E-value=1.1e-16 Score=153.88 Aligned_cols=141 Identities=9% Similarity=0.040 Sum_probs=129.8
Q ss_pred hhhhccccccCCHHHHHHHHhccccccccCCCeEEEeCCCCCeEEEEEeceEEEEEeeCCceEEEEEecCCCeeechhhh
Q 006573 377 LMDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQVVGEAKTGEICGEIGVL 456 (640)
Q Consensus 377 ~l~~~~~f~~ls~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~l~ 456 (640)
+++++|+|..++++.++.++..++...|++|++|+.+|++++.+|+|.+|.|+++...+|++.++..+.+|++||
T Consensus 1 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~~~~~~~G~~fG----- 75 (222)
T 1ft9_A 1 MPPRFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVYLVGEEREISLFYLTSGDMFC----- 75 (222)
T ss_dssp -CCCCCTHHHHTSTTTTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEEEEEEETTEEEEEEEEETTCEEE-----
T ss_pred CcccchhhhcCCHHHHHHHHhhCcEEEECCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEEEEEcCCCCEec-----
Confidence 367889999999999999999999999999999999999999999999999999866789999999999999999
Q ss_pred cCCCeeeEEEEccceEEEEeeHHHHHHHHHhchhhHHHHHHHHHHHHHcccchhhhhhhhhhHhhhhc
Q 006573 457 CYRPQLFTVRTKRLSQLLRLNRTTFLNIVQANVGDGTIIMNNLLQHLKDLKDPIMEGVLLETENMLAR 524 (640)
Q Consensus 457 ~~~~~~~~~~a~~~~~v~~i~~~~f~~ll~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~rl~~ 524 (640)
.|+.++++|.++|+++.|++++|.++++++|++...+...+..++.............+..+|++.
T Consensus 76 --~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~Rl~~ 141 (222)
T 1ft9_A 76 --MHSGCLVEATERTEVRFADIRTFEQKLQTCPSMAWGLIAILGRALTSCMRTIEDLMFHDIKQRIAG 141 (222)
T ss_dssp --SCSSCEEEESSCEEEEEECHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred --CCCCEEEEEccceEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 678999999999999999999999999999999999999999998887777777777777777763
No 36
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=99.67 E-value=1.4e-16 Score=151.91 Aligned_cols=146 Identities=16% Similarity=0.128 Sum_probs=118.0
Q ss_pred hccccccCCHHHHHHHHhccccccccCCCeEEEeCCCCCeEEEEEeceEEEEEe-eCCceEEEEEecCCCeeechhhhcC
Q 006573 380 KVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVL-KNGVEQVVGEAKTGEICGEIGVLCY 458 (640)
Q Consensus 380 ~~~~f~~ls~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~v~~~-~~g~~~~~~~l~~G~~fGe~~l~~~ 458 (640)
.-|+|+..++.....+...++...|++|++|+.+|++++.+|+|.+|.|+++.. .+|++.++..+.+|++||+.+++.+
T Consensus 3 ~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~~~~~~~ 82 (213)
T 1o5l_A 3 SDKIHHHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLEIDEIKPVQIIASGFIFSS 82 (213)
T ss_dssp ----------CCGGGGGGGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECTTSCEEEEEEECSSEESSGGGTTSS
T ss_pred ccccchhhccCCHHHHhcccEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEecCCCEeeeHHHhcC
Confidence 357888999999999999999999999999999999999999999999999874 6788899999999999999999987
Q ss_pred C-CeeeEEEEccceEEEEeeHHHHHHHHHhchhhHHHHHHHHHHHHHcccchhhhhhhhhhHhhhhcc
Q 006573 459 R-PQLFTVRTKRLSQLLRLNRTTFLNIVQANVGDGTIIMNNLLQHLKDLKDPIMEGVLLETENMLARG 525 (640)
Q Consensus 459 ~-~~~~~~~a~~~~~v~~i~~~~f~~ll~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~rl~~g 525 (640)
. ++.++++|.++|+++.|++++|.++++++|++...+.+.+..++....+........+.++|++.-
T Consensus 83 ~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~Rl~~~ 150 (213)
T 1o5l_A 83 EPRFPVNVVAGENSKILSIPKEVFLDLLMKDRELLLFFLKDVSEHFRVVSEKLFFLTTKTLREKLMNF 150 (213)
T ss_dssp SCBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCC---------
T ss_pred CCCceEEEEEccceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 6 899999999999999999999999999999999999999999887766666666667777777653
No 37
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=99.67 E-value=5.6e-16 Score=152.59 Aligned_cols=140 Identities=19% Similarity=0.304 Sum_probs=126.2
Q ss_pred ccCCHHHHHHHHhccccccccCCCeEEEeCCCCCeEEEEEeceEEEEEe-eCCceEEEEEecCCCeeechhhhcCC-Cee
Q 006573 385 RGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVL-KNGVEQVVGEAKTGEICGEIGVLCYR-PQL 462 (640)
Q Consensus 385 ~~ls~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~v~~~-~~g~~~~~~~l~~G~~fGe~~l~~~~-~~~ 462 (640)
..++++.++.++..++...|++|++|+.+|++++.+|+|.+|.|+++.. .+|++.++..+.+|++||+.+++.+. |+.
T Consensus 55 ~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~~~G~~~Ge~~~~~~~~~~~ 134 (260)
T 3kcc_A 55 KPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERS 134 (260)
T ss_dssp ----CHHHHHHHTTSEEEEECTTCEEECTTCBCCEEEEEEECEEEEEEECTTCCEEEEEEEETTCEESCTTTTSTTCBCC
T ss_pred CCCCHHHHHHHHhhCEEEEECCCCEEECCCCcCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehHHhCCCCCCc
Confidence 4589999999999999999999999999999999999999999999875 67888899999999999999999988 899
Q ss_pred eEEEEccceEEEEeeHHHHHHHHHhchhhHHHHHHHHHHHHHcccchhhhhhhhhhHhhhhc
Q 006573 463 FTVRTKRLSQLLRLNRTTFLNIVQANVGDGTIIMNNLLQHLKDLKDPIMEGVLLETENMLAR 524 (640)
Q Consensus 463 ~~~~a~~~~~v~~i~~~~f~~ll~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~rl~~ 524 (640)
++++|.++|+++.|++++|.+++.++|++...+.+.+..++.............+..+|++.
T Consensus 135 ~~~~A~~~~~l~~i~~~~~~~l~~~~p~l~~~l~~~l~~~l~~~~~~~~~l~~~~~~~Rla~ 196 (260)
T 3kcc_A 135 AWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLLVTGRIAQ 196 (260)
T ss_dssp SEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred eEEEECCCeEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 99999999999999999999999999999999999999998887777777777777777763
No 38
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.67 E-value=2.3e-16 Score=159.02 Aligned_cols=141 Identities=16% Similarity=0.208 Sum_probs=127.4
Q ss_pred HHhhhhHHHHhHHHHhhhHHhhhhccccccCCHHHHHHHHhccccccccCCCeEEEeCCCCCeEEEEEeceEEEEEeeCC
Q 006573 357 TLDSLPKAIRSSISHYLFYSLMDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNG 436 (640)
Q Consensus 357 ~l~~lp~~lr~~i~~~~~~~~l~~~~~f~~ls~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~v~~~~~g 436 (640)
...++|+..|++...+...++++++++|+.++++.+..++..++.+.|++|++|+++||.++.+|+|.+|.|++.. +|
T Consensus 20 ~~~~~p~~~rs~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~--~g 97 (299)
T 3shr_A 20 SMQAFRKFTKSERSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK--EG 97 (299)
T ss_dssp --CCCCCCCCCHHHHHHHHHHHHTCTTTTTSCHHHHHHHHHHCEEEEECTTCEEECTTCBCCCEEEEEESCEEEEE--TT
T ss_pred ccCCCCCcCCCHHHHHHHHHHHhhCHHHHcCCHHHHHHHHHhcCeEEECCCCEEEcCCCcCceEEEEEEEEEEEEE--CC
Confidence 3457899999999999999999999999999999999999999999999999999999999999999999999965 45
Q ss_pred ceEEEEEecCCCeeechhhhcCCCeeeEEEEccceEEEEeeHHHHHHHHHhchhhHHHHHHHHHH
Q 006573 437 VEQVVGEAKTGEICGEIGVLCYRPQLFTVRTKRLSQLLRLNRTTFLNIVQANVGDGTIIMNNLLQ 501 (640)
Q Consensus 437 ~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~a~~~~~v~~i~~~~f~~ll~~~~~~~~~~~~~l~~ 501 (640)
..+..+.+|++|||.+++.+.|+.++++|.++|+++.|++++|.+++..+|.........+..
T Consensus 98 --~~~~~~~~G~~fGe~~ll~~~~~~~tv~a~~~~~l~~i~~~~~~~i~~~~~~~~~~~~~~~l~ 160 (299)
T 3shr_A 98 --VKLCTMGPGKVFGELAILYNCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHTEYMEFLK 160 (299)
T ss_dssp --EEEEEECTTCEESCSGGGTTTBCCSEEEESSCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred --EEEEEeCCCCeeeHhHHhcCCCCCcEEEEcCCeEEEEEcHHHHHHHhhHhHHHHHHHHHHHHh
Confidence 478899999999999999999999999999999999999999999999999776655444443
No 39
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=99.67 E-value=5.8e-16 Score=158.53 Aligned_cols=129 Identities=22% Similarity=0.300 Sum_probs=121.5
Q ss_pred hHHhhhhccccccCCHHHHHHHHhccccccccCCCeEEEeCCCCCeEEEEEeceEEEEEe-eCCceEEEEEecCCCeeec
Q 006573 374 FYSLMDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVL-KNGVEQVVGEAKTGEICGE 452 (640)
Q Consensus 374 ~~~~l~~~~~f~~ls~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~v~~~-~~g~~~~~~~l~~G~~fGe 452 (640)
..++++++|+|+.++++.+..++..++.+.|++|++|+++||+++.+|+|.+|.|+++.. .+|++ .+..+.+|++||+
T Consensus 11 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~-~~~~~~~G~~fGe 89 (333)
T 4ava_A 11 RVEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVA-IIARALPGMIVGE 89 (333)
T ss_dssp CHHHHTTSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCCEEEEEECCEEEEEECTTCCE-EEEEECTTCEESH
T ss_pred hHHHHhCCHhHhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCcCCEEEEEEeeEEEEEEECCCCcE-EEEEecCCCEeeH
Confidence 346889999999999999999999999999999999999999999999999999999875 55655 8899999999999
Q ss_pred hhhhcCCCeeeEEEEccceEEEEeeHHHHHHHHHhchhhHHHHHHHHHHHHH
Q 006573 453 IGVLCYRPQLFTVRTKRLSQLLRLNRTTFLNIVQANVGDGTIIMNNLLQHLK 504 (640)
Q Consensus 453 ~~l~~~~~~~~~~~a~~~~~v~~i~~~~f~~ll~~~~~~~~~~~~~l~~~l~ 504 (640)
.+++.+.|+.++++|.++|+++.|++++|.+++ ++|.+...+.+.+.++..
T Consensus 90 ~~l~~~~~~~~~v~A~~~~~~~~i~~~~~~~l~-~~p~~~~~~~~~~~~~~~ 140 (333)
T 4ava_A 90 IALLRDSPRSATVTTIEPLTGWTGGRGAFATMV-HIPGVGERLLRTARQRLA 140 (333)
T ss_dssp HHHHHTCBCSSEEEESSCEEEEEECHHHHHHHH-HSTTHHHHHHHHHHHHHH
T ss_pred HHhcCCCCceEEEEEecCEEEEEEcHHHHHHHH-hChHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999 999999999999998877
No 40
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=99.67 E-value=3.2e-17 Score=143.96 Aligned_cols=125 Identities=13% Similarity=0.129 Sum_probs=110.1
Q ss_pred HHHHhHHHHhhhHHhhhhccccccCCHHHHHHHHhcccccccc-CCCeEEEeCCCCCeEEEEEeceEEEEEeeCCceEEE
Q 006573 363 KAIRSSISHYLFYSLMDKVYLFRGVSNDLLFQLVSEMKAEYFP-PKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQVV 441 (640)
Q Consensus 363 ~~lr~~i~~~~~~~~l~~~~~f~~ls~~~l~~l~~~~~~~~~~-~ge~i~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~ 441 (640)
++.|.+.......++++++++|..++++.++.++..++.+.|+ +|++|+++||.++.+|+|.+|.|+++. .+|++
T Consensus 3 p~~r~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~-~~g~~--- 78 (134)
T 2d93_A 3 SGSSGDDDIEQLLEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVEISH-PDGKV--- 78 (134)
T ss_dssp CSCCSTTHHHHHHHHHHHSSTTTSSCHHHHHHHTTTEEEEEECSSSCEEECTTCEECEEEECCBSCEEEEC-SSSCE---
T ss_pred hhhcCHHHHHHHHHHHhCCcchhhCCHHHHHHHHHhheEEEecCCCCEEEeCCCCCCeEEEEEeCEEEEEc-CCCcE---
Confidence 3344444445556788999999999999999999999999999 999999999999999999999999985 55654
Q ss_pred EEecCCCeeechhhhcCCCeeeEE-EEccceEEEEeeHHHHHHHHHhchhh
Q 006573 442 GEAKTGEICGEIGVLCYRPQLFTV-RTKRLSQLLRLNRTTFLNIVQANVGD 491 (640)
Q Consensus 442 ~~l~~G~~fGe~~l~~~~~~~~~~-~a~~~~~v~~i~~~~f~~ll~~~~~~ 491 (640)
..+.+|++||+.+++.+.++.+++ +|.++|+++.|++++|.++++++++.
T Consensus 79 ~~l~~G~~fG~~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~~ 129 (134)
T 2d93_A 79 ENLFMGNSFGITPTLDKQYMHGIVRTKVDDCQFVCIAQQDYWRILNHVEKS 129 (134)
T ss_dssp EEECTTCEESCCSSSCCEECCSEEEESSSSEEEEEEEHHHHHHHSSCCSSS
T ss_pred EEecCCCccChhHhcCCCcceeEEEEEecceEEEEEeHHHHHHHHHHHHhc
Confidence 568999999999999999999899 99999999999999999999887653
No 41
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=99.66 E-value=1.3e-15 Score=134.96 Aligned_cols=113 Identities=22% Similarity=0.396 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCccCcchHHHHHHHHHhhhhhhcccccCCcccCCchhhHH
Q 006573 201 CCKLIFVTLFAVHCAGCFYYLLAARYHNPERTWIGASLGQNFLEKSLWIRYVTSMYWSITTLTTVGYGDLHPVNTREMVF 280 (640)
Q Consensus 201 l~~l~~~~~~~~h~~ac~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~y~~s~yw~~~t~ttvGygd~~p~t~~e~~~ 280 (640)
....++.++++.+++++++|...+ + .+|.+|+||+++|+||+||||++|.|..++++
T Consensus 26 ~~~~~~~~~~~~~~~g~~~~~~~e-------------------~----~~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~ 82 (148)
T 3vou_A 26 EFQVLFVLTFLTLTSGTIFYSTVE-------------------G----LRPLDALYFSVVTLTTVGDGNFSPQTDFGKVF 82 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTS-------------------C----CCHHHHHHHHHHHHTTCCCSSCCCCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-------------------C----CCHHHHHHHHHHHHHccCCCCCCCCCccHHHH
Confidence 344555666677777887776441 1 26899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHhh----chhhHHHHHHHHHHHHHHHhCCCCHHHHHH
Q 006573 281 DILFMLFNLGLTAYLIGNMTN------LVVHG----TSRTRKFRDTIQAASSFAQRNQLPIRLQDQ 336 (640)
Q Consensus 281 ~i~~~i~g~~~~a~~i~~i~~------~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r 336 (640)
+++.+++|+.++++.++.+++ +.... +....+..++++++++++++++.|++|+.|
T Consensus 83 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~i~~~~~~~~~~~~L~~R 148 (148)
T 3vou_A 83 TILYIFIGIGLVFGFIHKLAVNVQLPSILSNRKKETDAYRLEVMEKLEAIEKKLAEHSRQGSLVPR 148 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCC
Confidence 999999999999999999886 22222 334445567788899999999999998875
No 42
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=99.64 E-value=7e-16 Score=151.06 Aligned_cols=145 Identities=13% Similarity=0.112 Sum_probs=129.9
Q ss_pred hhhhccccccCCHHHHHHHHhccccccccCCCeEEEeCCCCCeEEEEEeceEEEEEe-eCCceEEEEEecCCCeeechhh
Q 006573 377 LMDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVL-KNGVEQVVGEAKTGEICGEIGV 455 (640)
Q Consensus 377 ~l~~~~~f~~ls~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~v~~~-~~g~~~~~~~l~~G~~fGe~~l 455 (640)
++.+...+..+|++.++.+...++...|++|++|+.+|++++.+|+|.+|.|+++.. .+|++.++..+.+|++||+ +
T Consensus 10 ~~~~~~p~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~--~ 87 (250)
T 3e6c_C 10 FCGAIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSEKLLYYAGGNSLIGK--L 87 (250)
T ss_dssp CCCCSSSBSCSCCGGGGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEESCEEEEEECTTSCEEEEEEECTTCEECC--C
T ss_pred hhhhccchhhCCHHHHHHHHhhCeEEEECCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEee--e
Confidence 445555568999999999999999999999999999999999999999999999875 7789999999999999999 7
Q ss_pred hcCCCeeeEEEEccceEEEEeeHHHHHHHHHhchhhHHHHHHHHHHHHHcccchhhhhhhhhhHhhhhc
Q 006573 456 LCYRPQLFTVRTKRLSQLLRLNRTTFLNIVQANVGDGTIIMNNLLQHLKDLKDPIMEGVLLETENMLAR 524 (640)
Q Consensus 456 ~~~~~~~~~~~a~~~~~v~~i~~~~f~~ll~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~rl~~ 524 (640)
+.+. +.++++|.++|+++.+++++|.+++.++|++...+.+.+..++.............+.++|++.
T Consensus 88 l~~~-~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~Rl~~ 155 (250)
T 3e6c_C 88 YPTG-NNIYATAMEPTRTCWFSEKSLRTVFRTDEDMIFEIFKNYLTKVAYYARQVAEMNTYNPTIRILR 155 (250)
T ss_dssp SCCS-CCEEEEESSSEEEEEECHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred cCCC-CceEEEEcccEEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 7888 9999999999999999999999999999999999999999998877766666666677766653
No 43
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.62 E-value=2e-15 Score=158.62 Aligned_cols=132 Identities=21% Similarity=0.356 Sum_probs=120.8
Q ss_pred HhHHHHhhhHHhhhhccccccCCHHHHHHHHhccccccccCCCeEEEeCCCCCeEEEEEeceEEEEEeeCCceEEEEEec
Q 006573 366 RSSISHYLFYSLMDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQVVGEAK 445 (640)
Q Consensus 366 r~~i~~~~~~~~l~~~~~f~~ls~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~ 445 (640)
|.+-......++++++++|++++++.+..++..+..+.|++|++|+++||.++.+|+|.+|.|+++...+|++..+..+.
T Consensus 135 ks~~~~~~i~~~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~qGd~~d~~YiI~sG~v~v~~~~~G~~~~v~~l~ 214 (416)
T 3tnp_B 135 KTDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYD 214 (416)
T ss_dssp CCHHHHHHHHHHHTTSHHHHTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECEEEEEEECSSCEEEEEEEE
T ss_pred CCHHHHHHHHHHHhCCHhHhcCCHHHHHHHHHhcEEEEeCCCCEEEeCCCCCceEEEEEeeEEEEEEecCCCEEEEEEec
Confidence 33444556778999999999999999999999999999999999999999999999999999999988888889999999
Q ss_pred CCCeeechhhhcCCCeeeEEEEccceEEEEeeHHHHHHHHHhchhhHHHHHH
Q 006573 446 TGEICGEIGVLCYRPQLFTVRTKRLSQLLRLNRTTFLNIVQANVGDGTIIMN 497 (640)
Q Consensus 446 ~G~~fGe~~l~~~~~~~~~~~a~~~~~v~~i~~~~f~~ll~~~~~~~~~~~~ 497 (640)
+|++|||.+++.+.||.++++|.++|+++.|++++|.+++..+|.....+..
T Consensus 215 ~G~~fGe~all~~~pr~atv~A~~d~~l~~i~r~~f~~ll~~~~~~~~~~~~ 266 (416)
T 3tnp_B 215 NRGSFGELALMYNTPKAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYE 266 (416)
T ss_dssp SCCEECGGGGTSCCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHHHSSSSS
T ss_pred CCCEEeeHHHhcCCCcccEEEEccCeEEEEEeehhhhhhhhcchhHHHHHHH
Confidence 9999999999999999999999999999999999999999999887654333
No 44
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=99.61 E-value=1.6e-15 Score=133.07 Aligned_cols=92 Identities=20% Similarity=0.330 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCccCcchHHHHHHHHHhhhhhhcccccCCcccCCchhhH
Q 006573 200 RCCKLIFVTLFAVHCAGCFYYLLAARYHNPERTWIGASLGQNFLEKSLWIRYVTSMYWSITTLTTVGYGDLHPVNTREMV 279 (640)
Q Consensus 200 ~l~~l~~~~~~~~h~~ac~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~y~~s~yw~~~t~ttvGygd~~p~t~~e~~ 279 (640)
.+...++.+++++++.|+++|.++.. .+++.+.+|.+|+||+++|+||+||||++|.|..+++
T Consensus 7 ~~~~~~~~~~~~~~~~a~~~~~~e~~-----------------~~~~~~~~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~ 69 (139)
T 3eff_K 7 AAGAATVLLVIVLLAGSYLAVLAERG-----------------APGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRL 69 (139)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTTSS-----------------CTTCCCCCHHHHHHHHHHHHTTCCCSSSCCCSSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC-----------------CCCcccCCHHHHHHHHheeeecccCCCCcCCCcCHHH
Confidence 45555666666777778888876621 1233445799999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q 006573 280 FDILFMLFNLGLTAYLIGNMTNLVVHGTS 308 (640)
Q Consensus 280 ~~i~~~i~g~~~~a~~i~~i~~~~~~~~~ 308 (640)
++++.+++|+++++++++.+++.+....+
T Consensus 70 ~~~~~~~~G~~~~~~~~~~i~~~~~~~~~ 98 (139)
T 3eff_K 70 VAVVVMVAGITSFGLVTAALATWFVGREQ 98 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988755443
No 45
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.61 E-value=4.9e-15 Score=148.57 Aligned_cols=131 Identities=20% Similarity=0.311 Sum_probs=120.0
Q ss_pred HhhhHHhhhhccccccCCHHHHHHHHhccccccccCCCeEEEeCCCCCeEEEEEeceEEEEEeeCCceEEEEEecCCCee
Q 006573 371 HYLFYSLMDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQVVGEAKTGEIC 450 (640)
Q Consensus 371 ~~~~~~~l~~~~~f~~ls~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~f 450 (640)
.....++++++++|+.++++.+..++..++...|++|++|+++||.++.+|+|.+|.|+++. +| ..+..+.+|++|
T Consensus 34 ~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~--~g--~~~~~l~~G~~f 109 (291)
T 2qcs_B 34 MAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV--NN--EWATSVGEGGSF 109 (291)
T ss_dssp HHHHHHHTTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEE--TT--EEEEEECTTCEE
T ss_pred HHHHHHHHhcChhhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCceEEEEeeeEEEEEE--CC--eEEEEcCCCCcc
Confidence 34566789999999999999999999999999999999999999999999999999999987 55 368899999999
Q ss_pred echhhhcCCCeeeEEEEccceEEEEeeHHHHHHHHHhchhhHHHHHHHHHHHHHc
Q 006573 451 GEIGVLCYRPQLFTVRTKRLSQLLRLNRTTFLNIVQANVGDGTIIMNNLLQHLKD 505 (640)
Q Consensus 451 Ge~~l~~~~~~~~~~~a~~~~~v~~i~~~~f~~ll~~~~~~~~~~~~~l~~~l~~ 505 (640)
|+.+++.+.|+.++++|.++|+++.|++++|.+++..+|.....+...+..+...
T Consensus 110 Ge~~l~~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 164 (291)
T 2qcs_B 110 GELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMYEEFLSKVSI 164 (291)
T ss_dssp CGGGGTCCCBCSSEEEESSCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHTCGG
T ss_pred chHHHhcCCCCceEEEECCCEEEEEEEhHHHHHHHhhhHHHHHHHHHHHHhhchH
Confidence 9999999999999999999999999999999999999999988887777765443
No 46
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.61 E-value=2.3e-15 Score=146.92 Aligned_cols=128 Identities=22% Similarity=0.353 Sum_probs=116.6
Q ss_pred hHHhhhhccccccCCHHHHHHHHhccccccccCCCeEEEeCCCCCeEEEEEeceEEEEEeeCCceEEEEEecCCCeeech
Q 006573 374 FYSLMDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQVVGEAKTGEICGEI 453 (640)
Q Consensus 374 ~~~~l~~~~~f~~ls~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~ 453 (640)
..++++++++|++++++.++.++..++.+.|++|++|+++||+++.+|+|.+|.|+++. +|+ .+..+.+|++|||.
T Consensus 5 i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~v~~--~~~--~~~~~~~g~~fGe~ 80 (246)
T 3of1_A 5 LEKSIRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYV--NDN--KVNSSGPGSSFGEL 80 (246)
T ss_dssp HHHHHHTCTTTTTSCHHHHHHHHTTCEEEEECTTCEEECTTCCCCEEEEEEECCEEEES--TTS--CCEEECTTCEECHH
T ss_pred HHHHHhcCHhhHhCCHHHHHHHHHhhceEEECCCCEEEecCCCCCEEEEEEeeEEEEEE--CCE--EEEecCCCCeeehh
Confidence 45688999999999999999999999999999999999999999999999999999986 444 36899999999999
Q ss_pred hhhcCCCeeeEEEEccceEEEEeeHHHHHHHHHhchhhHHHHHHHHHHHHHc
Q 006573 454 GVLCYRPQLFTVRTKRLSQLLRLNRTTFLNIVQANVGDGTIIMNNLLQHLKD 505 (640)
Q Consensus 454 ~l~~~~~~~~~~~a~~~~~v~~i~~~~f~~ll~~~~~~~~~~~~~l~~~l~~ 505 (640)
+++.+.|+.++++|.++|+++.|++++|.+++..+|.....+...+..+...
T Consensus 81 ~l~~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 132 (246)
T 3of1_A 81 ALMYNSPRAATVVATSDCLLWALDRLTFRKILLGSSFKKRLMYDDLLKSMPV 132 (246)
T ss_dssp HHHHTCCCSSEEEESSCEEEEEEEHHHHHHTTTTTTSHHHHHSHHHHHHCGG
T ss_pred HHhcCCCCCcEEEECCCeEEEEEEhHHHHHHHHHhHHHHHHHHHHHHhhChh
Confidence 9999999999999999999999999999999999998887777766665443
No 47
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=99.60 E-value=9e-15 Score=142.42 Aligned_cols=135 Identities=15% Similarity=0.202 Sum_probs=119.8
Q ss_pred HHHHHHHHhccc---cccccCCCeEEEeCCCCCeEEEEEeceEEEEE-eeCCceEEEEEecCCCeeechhhhcCCC--ee
Q 006573 389 NDLLFQLVSEMK---AEYFPPKEDVILQNEAPTDFYILVTGAVDLLV-LKNGVEQVVGEAKTGEICGEIGVLCYRP--QL 462 (640)
Q Consensus 389 ~~~l~~l~~~~~---~~~~~~ge~i~~~g~~~~~ly~I~~G~v~v~~-~~~g~~~~~~~l~~G~~fGe~~l~~~~~--~~ 462 (640)
+++++.+..... .+.|++|++|+.+|++++.+|+|.+|.|+++. ..+|++.++..+.+|++||+.+++.+.| +.
T Consensus 30 ~~~l~~L~~~~~~~~~~~~~~ge~i~~~G~~~~~ly~v~~G~v~~~~~~~~G~~~~l~~~~~g~~~G~~~~~~~~~~~~~ 109 (243)
T 3la7_A 30 ANVFRQMATGAFPPVVETFERNKTIFFPGDPAERVYFLLKGAVKLSRVYEAGEEITVALLRENSVFGVLSLLTGNKSDRF 109 (243)
T ss_dssp HHHHHHHCCSSCCCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTCCEEEEEEECTTCEESCHHHHSSCCSBCC
T ss_pred HHHHHHHhhccchheeEEECCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEcchHHhCCCCCcce
Confidence 677888888888 99999999999999999999999999999987 4678899999999999999999999887 45
Q ss_pred eEEEEccceEEEEeeHHHHHHHHHhchhhHHHHHHHHHHHHHcccchhhhhhhhhhHhhhh
Q 006573 463 FTVRTKRLSQLLRLNRTTFLNIVQANVGDGTIIMNNLLQHLKDLKDPIMEGVLLETENMLA 523 (640)
Q Consensus 463 ~~~~a~~~~~v~~i~~~~f~~ll~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~rl~ 523 (640)
++++|.++|+++.|++++|.++++++|++...+.+.+..++.............+.++|++
T Consensus 110 ~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~~~~~~~~l~~~~~~~Rla 170 (243)
T 3la7_A 110 YHAVAFTPVELLSAPIEQVEQALKENPELSMLMLRGLSSRILQTEMMIETLAHRDMGSRLV 170 (243)
T ss_dssp EEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSHHHHHH
T ss_pred EEEEEccceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 8999999999999999999999999999999999999888877665555555666666665
No 48
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=99.60 E-value=9.1e-15 Score=141.93 Aligned_cols=138 Identities=10% Similarity=0.097 Sum_probs=120.0
Q ss_pred ccCCHHHHHHHHh--ccccccccCCCeEEEeCCCCCeEEEEEeceEEEEEe-eCCceEEEEEecCCCeeechhhhcCCCe
Q 006573 385 RGVSNDLLFQLVS--EMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVL-KNGVEQVVGEAKTGEICGEIGVLCYRPQ 461 (640)
Q Consensus 385 ~~ls~~~l~~l~~--~~~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~v~~~-~~g~~~~~~~l~~G~~fGe~~l~~~~~~ 461 (640)
++++++.++++.. .++.+.|++|++|+.+||+++.+|+|.+|.|+++.. .+|++.++..+ +|++||+.+++.+.++
T Consensus 2 ~~l~~~~l~~ll~~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~-~G~~~Ge~~~~~~~~~ 80 (238)
T 2bgc_A 2 SNAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYY-KGAFVIMSGFIDTETS 80 (238)
T ss_dssp --CHHHHHHHHHHHTTCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEEECTTSCEEEEEEE-ESSEEEESBCTTTCCB
T ss_pred CCCCHHHHHHHHHhCCceEEEECCCCEEEeCCCCCceEEEEEecEEEEEEECCCCCEEEEEEc-CCCEecchhhhcCCCc
Confidence 4678899998885 589999999999999999999999999999999874 67888889998 9999999999998864
Q ss_pred --eeEEEEc-cceEEEEeeHHHHHHHHHhchhhHHHHHHHHHHHHHcccchhhhhhhhhhHhhhh
Q 006573 462 --LFTVRTK-RLSQLLRLNRTTFLNIVQANVGDGTIIMNNLLQHLKDLKDPIMEGVLLETENMLA 523 (640)
Q Consensus 462 --~~~~~a~-~~~~v~~i~~~~f~~ll~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~rl~ 523 (640)
..++.|. ++|+++.|++++|.+++.++|++...+.+.+..++.............+..+|++
T Consensus 81 ~~~~~~~a~~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Rla 145 (238)
T 2bgc_A 81 VGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQKQVSYSLAKFNDFSINGKLGSIC 145 (238)
T ss_dssp SCCCEEEECSSEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred CcceeEEEEEcceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 6777777 5999999999999999999999999999999998887766666666666766665
No 49
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.59 E-value=5.4e-15 Score=144.25 Aligned_cols=118 Identities=19% Similarity=0.378 Sum_probs=108.8
Q ss_pred hhHHhhhhccccccCCHHHHHHHHhccccccccCCCeEEEeCCCCCeEEEEEeceEEEEEeeCCceEEEEEecCCCeeec
Q 006573 373 LFYSLMDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQVVGEAKTGEICGE 452 (640)
Q Consensus 373 ~~~~~l~~~~~f~~ls~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe 452 (640)
....++++.++|..++++.+..++..++.+.|++|++|+++||+++.+|+|.+|.|+++...++ .+..+++|++|||
T Consensus 122 ~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~I~~G~v~v~~~~~~---~~~~l~~g~~fGe 198 (246)
T 3of1_A 122 MYDDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYGAVDVSKKGQG---VINKLKDHDYFGE 198 (246)
T ss_dssp HSHHHHHHCGGGTTCCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEETTTE---EEEEEETTCEECH
T ss_pred HHHHHHhhChhhhcCCHHHHHHHHHhhheEEeCCCCEEEeCCCcCCEEEEEEecEEEEEEcCCc---eEEEcCCCCcccH
Confidence 3456788899999999999999999999999999999999999999999999999999874332 6889999999999
Q ss_pred hhhhcCCCeeeEEEEccceEEEEeeHHHHHHHHHhchhhHH
Q 006573 453 IGVLCYRPQLFTVRTKRLSQLLRLNRTTFLNIVQANVGDGT 493 (640)
Q Consensus 453 ~~l~~~~~~~~~~~a~~~~~v~~i~~~~f~~ll~~~~~~~~ 493 (640)
.+++.+.||.++++|.++|+++.|++++|.+++..+|++.+
T Consensus 199 ~~~~~~~~~~~~v~a~~~~~~~~i~~~~f~~ll~~~~~~~~ 239 (246)
T 3of1_A 199 VALLNDLPRQATVTATKRTKVATLGKSGFQRLLGPAVDVLK 239 (246)
T ss_dssp HHHHHTCBCSSEEEESSCEEEEEEEHHHHHHHCTTHHHHHH
T ss_pred HHHhCCCCcccEEEECCCEEEEEEeHHHHHHHhccHHHHHh
Confidence 99999999999999999999999999999999999887653
No 50
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.59 E-value=9.6e-15 Score=146.43 Aligned_cols=129 Identities=17% Similarity=0.295 Sum_probs=116.1
Q ss_pred hhHHhhhhccccccCCHHHHHHHHhccccccccCCCeEEEeCCCCCeEEEEEeceEEEEEe-eCC-ceEEEEEecCCCee
Q 006573 373 LFYSLMDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVL-KNG-VEQVVGEAKTGEIC 450 (640)
Q Consensus 373 ~~~~~l~~~~~f~~ls~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~v~~~-~~g-~~~~~~~l~~G~~f 450 (640)
....++++.++|..++++.+..++..++...|++|++|+++||+++.+|+|.+|.|++... .+| ++..+..+++|++|
T Consensus 154 ~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~~l~~G~~f 233 (291)
T 2qcs_B 154 MYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYF 233 (291)
T ss_dssp HHHHHHHTCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEECSTTSCEEEEEEECTTCEE
T ss_pred HHHHHHhhchHhhhCCHHHHHHHHhhcEEEEECCCCEEEeCCccCCEEEEEEeCEEEEEEecCCCCccEEEEEeCCCCEe
Confidence 3456778899999999999999999999999999999999999999999999999999874 333 45789999999999
Q ss_pred echhhhcCCCeeeEEEEccceEEEEeeHHHHHHHHHhchhhHHHHHHHHHH
Q 006573 451 GEIGVLCYRPQLFTVRTKRLSQLLRLNRTTFLNIVQANVGDGTIIMNNLLQ 501 (640)
Q Consensus 451 Ge~~l~~~~~~~~~~~a~~~~~v~~i~~~~f~~ll~~~~~~~~~~~~~l~~ 501 (640)
||.+++.+.|+.++++|.++|+++.|++++|.+++..+|++....++....
T Consensus 234 Ge~~ll~~~~~~~tv~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~~~~~~~ 284 (291)
T 2qcs_B 234 GEIALLMNRPKAATVVARGPLKCVKLDRPRFERVLGPCSDILKRNIQQYNS 284 (291)
T ss_dssp CSGGGTCCCCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTTSHHHHHH
T ss_pred cHHHHcCCCCcceEEEECCcEEEEEEcHHHHHHHhccHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999977766655543
No 51
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.58 E-value=5.5e-15 Score=153.65 Aligned_cols=131 Identities=21% Similarity=0.297 Sum_probs=120.4
Q ss_pred HhhhHHhhhhccccccCCHHHHHHHHhccccccccCCCeEEEeCCCCCeEEEEEeceEEEEEeeCCceEEEEEecCCCee
Q 006573 371 HYLFYSLMDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQVVGEAKTGEIC 450 (640)
Q Consensus 371 ~~~~~~~l~~~~~f~~ls~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~f 450 (640)
.....++++++++|++++++.+..++..++.+.|++|++|+++||.++.+|+|.+|.|+++. +|+ .+..+.+|++|
T Consensus 125 ~~~i~~~l~~~~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~~yiI~~G~v~v~~--~~~--~v~~l~~G~~f 200 (381)
T 4din_B 125 MTALAKAISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYV--NGE--WVTNISEGGSF 200 (381)
T ss_dssp HHHHHHHHTTCTTSSSCCHHHHHHHHHHCEEEECCTTCBSSCTTSBCCEEEECSSSEEEEEE--TTE--EEEEEESSCCB
T ss_pred HHHHHHHHhCChhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEeeEEEEEE--CCe--EeeeCCCCCEE
Confidence 34566789999999999999999999999999999999999999999999999999999986 453 67889999999
Q ss_pred echhhhcCCCeeeEEEEccceEEEEeeHHHHHHHHHhchhhHHHHHHHHHHHHHc
Q 006573 451 GEIGVLCYRPQLFTVRTKRLSQLLRLNRTTFLNIVQANVGDGTIIMNNLLQHLKD 505 (640)
Q Consensus 451 Ge~~l~~~~~~~~~~~a~~~~~v~~i~~~~f~~ll~~~~~~~~~~~~~l~~~l~~ 505 (640)
||.+++.+.|+.++++|.++|+++.|++++|.+++..+|.....+...+..+...
T Consensus 201 Ge~all~~~~r~atv~A~~~~~l~~i~~~~f~~ll~~~~~~~~~~~~~~L~~v~~ 255 (381)
T 4din_B 201 GELALIYGTPRAATVKAKTDLKLWGIDRDSYRRILMGSTLRKRKMYEEFLSKVSI 255 (381)
T ss_dssp CGGGGTSCCBCSSEEEESSSCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCST
T ss_pred EchHHhcCCCcceEEEECCCEEEEEEchHHHHHhhhhhhHHHHHHHHHHhhhhHH
Confidence 9999999999999999999999999999999999999999988888777776543
No 52
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.57 E-value=1.7e-15 Score=162.75 Aligned_cols=142 Identities=19% Similarity=0.188 Sum_probs=126.7
Q ss_pred hhHHHHhHHHHhhhHHhhhhccccccCCHHHHHHHHhccccccccCCCeEEEeCCCCCeEEEEEeceEEEEEe-eCCc--
Q 006573 361 LPKAIRSSISHYLFYSLMDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVL-KNGV-- 437 (640)
Q Consensus 361 lp~~lr~~i~~~~~~~~l~~~~~f~~ls~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~v~~~-~~g~-- 437 (640)
.|+..|++.......+.++++++|++++++.++.++..++...|++|++|+++||.++.+|+|.+|.|+++.. .+|+
T Consensus 27 ~~~~~rt~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~Gd~~~~~y~i~~G~v~v~~~~~~g~~~ 106 (469)
T 1o7f_A 27 KRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQD 106 (469)
T ss_dssp SCSTTCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEECSSSCGGG
T ss_pred CChhhCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCcEEEEEeeEEEEEEecCCCCCc
Confidence 3566677777778888999999999999999999999999999999999999999999999999999999884 4554
Q ss_pred eEEEEEecCCCeeechhhhcCCCeeeEEEEccceEEEEeeHHHHHHHHHhchhhHHHHHHHHHHHH
Q 006573 438 EQVVGEAKTGEICGEIGVLCYRPQLFTVRTKRLSQLLRLNRTTFLNIVQANVGDGTIIMNNLLQHL 503 (640)
Q Consensus 438 ~~~~~~l~~G~~fGe~~l~~~~~~~~~~~a~~~~~v~~i~~~~f~~ll~~~~~~~~~~~~~l~~~l 503 (640)
+..+..+.+|++||+.+ +.+.|+.++++|.++|+++.|++++|.+++.++|++...+.+.+..++
T Consensus 107 ~~~~~~~~~G~~fGe~~-l~~~~~~~tv~A~~~~~l~~i~~~~~~~l~~~~p~~~~~l~~~~~~~l 171 (469)
T 1o7f_A 107 AVTICTLGIGTAFGESI-LDNTPRHATIVTRESSELLRIEQEDFKALWEKYRQYMAGLLAPPYGVM 171 (469)
T ss_dssp CEEEEEECTTCEECGGG-GGTCBCSSEEEESSSEEEEEEEHHHHHHHHHHHGGGTTTTSCTTTSCS
T ss_pred ceEEEEccCCCCcchhh-hCCCCccceEEEccceeEEEEcHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 47899999999999999 999999999999999999999999999999999998776655444433
No 53
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.57 E-value=2.2e-15 Score=137.55 Aligned_cols=107 Identities=25% Similarity=0.215 Sum_probs=96.5
Q ss_pred cCCCCCcceeeeeecCCHHHHHHHHhcCCCCCCCCCCCCcccccccccCcccccccccchhHHHHHHhhc---------c
Q 006573 525 GRMDLPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFNL---------F 595 (640)
Q Consensus 525 g~~~l~~~l~~a~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~---------~ 595 (640)
.+..+.+|++.|+..++.++++.|+++|+++|.+|..|+||| ++++..++.+++++|+++| +
T Consensus 33 ~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpL---------h~A~~~g~~~~v~~Ll~~gadvn~~d~~G 103 (169)
T 4gpm_A 33 SDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPL---------HHAAENGHKEVVKLLISKGADVNAKDSDG 103 (169)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH---------HHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHH---------HHHHHcCCHHHHHHHHHCcCCCCCCCCCC
Confidence 344567889999999999999999999999999999999999 7777778899999999986 5
Q ss_pred cchhhHhhcCCCHHHHHHHHhccCCCCCCCcccceeeeeeccccC
Q 006573 596 YFKQHIAASKGSENCVLLLLDYEADPNSIGMLVTKYIIRFFGFVH 640 (640)
Q Consensus 596 ~~~~h~a~~~g~~~~~~~L~~~ga~~~~~~~~g~~~~~~~~~~~~ 640 (640)
.+|||+|+..|+.+++++|+++|||+|.+|.+|+|||..|....|
T Consensus 104 ~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~ 148 (169)
T 4gpm_A 104 RTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGN 148 (169)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCC
Confidence 669999999999999999999999999999999999998865543
No 54
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.57 E-value=3.2e-15 Score=157.11 Aligned_cols=134 Identities=13% Similarity=0.273 Sum_probs=112.0
Q ss_pred hhHHhhhhccccccCCHHHHHHHHhccccccccCCCeEEEeCCCCCeEEEEEeceEEEEEe-eC------CceEEEEEec
Q 006573 373 LFYSLMDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVL-KN------GVEQVVGEAK 445 (640)
Q Consensus 373 ~~~~~l~~~~~f~~ls~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~v~~~-~~------g~~~~~~~l~ 445 (640)
.+..+++++++|..++++.+..++..+....|++|++|+++|+.++.+|+|.+|.|+++.. .+ |++..+..++
T Consensus 264 ~~~~~L~~v~lf~~Ls~~el~~L~~~l~~~~~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~~~~~~~~~~~g~~~~l~~l~ 343 (416)
T 3tnp_B 264 MYESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAVEIARCF 343 (416)
T ss_dssp SSSSSGGGCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEECC------------CEEEEEC
T ss_pred HHHHHHhhchHhhcCCHHHHHHHHhhceEEEECCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCcccccCCceeEEEEeC
Confidence 4556788899999999999999999999999999999999999999999999999999874 33 6777899999
Q ss_pred CCCeeechhhhcCCCeeeEEEEccceEEEEeeHHHHHHHHHhchhhHHHHHHHHHHHHHcc
Q 006573 446 TGEICGEIGVLCYRPQLFTVRTKRLSQLLRLNRTTFLNIVQANVGDGTIIMNNLLQHLKDL 506 (640)
Q Consensus 446 ~G~~fGe~~l~~~~~~~~~~~a~~~~~v~~i~~~~f~~ll~~~~~~~~~~~~~l~~~l~~~ 506 (640)
+|++|||.+++.+.||.++++|.++|+++.|++++|.+++..+|++....+..+.+++...
T Consensus 344 ~G~~fGE~all~~~~r~~tv~A~~~~~ll~I~~~~f~~ll~~~p~i~~~~~~~~~~~L~~~ 404 (416)
T 3tnp_B 344 RGQYFGELALVTNKPRAASAHAIGTVKCLAMDVQAFERLLGPCMEIMKRNIATYEEQLVAL 404 (416)
T ss_dssp TTCEESGGGGTCCSCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTCC-----------
T ss_pred CCCEecHHHHhCCCCceeEEEEcCCeEEEEEEHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998877777766666554
No 55
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.57 E-value=9.8e-16 Score=139.94 Aligned_cols=99 Identities=28% Similarity=0.251 Sum_probs=90.7
Q ss_pred eeeeeecCCHHHHHHHHhcCCCCCCCCCCCCcccccccccCcccccccccchhHHHHHHhhc---------ccchhhHhh
Q 006573 533 LCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFNL---------FYFKQHIAA 603 (640)
Q Consensus 533 l~~a~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~---------~~~~~h~a~ 603 (640)
++.|+..|+.++++.|+++|+|+|.+|.+|+||| +.++..+..++++.|+++| +.+|||+|+
T Consensus 8 L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l---------~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~ 78 (169)
T 4gpm_A 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPL---------HHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAA 78 (169)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH---------HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHH---------HHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHH
Confidence 4569999999999999999999999999999999 7777778899999999886 567999999
Q ss_pred cCCCHHHHHHHHhccCCCCCCCcccceeeeeeccccC
Q 006573 604 SKGSENCVLLLLDYEADPNSIGMLVTKYIIRFFGFVH 640 (640)
Q Consensus 604 ~~g~~~~~~~L~~~ga~~~~~~~~g~~~~~~~~~~~~ 640 (640)
..|+.+++++|+++|||+|.+|.+|+|||+.|....|
T Consensus 79 ~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~ 115 (169)
T 4gpm_A 79 ENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGH 115 (169)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred HcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCC
Confidence 9999999999999999999999999999998876543
No 56
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.56 E-value=9.4e-15 Score=151.91 Aligned_cols=132 Identities=19% Similarity=0.296 Sum_probs=118.4
Q ss_pred hhhHHhhhhccccccCCHHHHHHHHhccccccccCCCeEEEeCCCCCeEEEEEeceEEEEEe-eCCc-eEEEEEecCCCe
Q 006573 372 YLFYSLMDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVL-KNGV-EQVVGEAKTGEI 449 (640)
Q Consensus 372 ~~~~~~l~~~~~f~~ls~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~v~~~-~~g~-~~~~~~l~~G~~ 449 (640)
.++..+++++++|..+++..+..++..++...|++|++|+++|+.++.+|+|.+|.|+++.. .+|+ ...+..+++|++
T Consensus 244 ~~~~~~L~~v~~f~~Ls~~el~~l~~~~~~~~~~~ge~I~~eGd~~~~~yiI~~G~v~v~~~~~~~~~~~~v~~l~~Gd~ 323 (381)
T 4din_B 244 KMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRSPNEEYVEVGRLGPSDY 323 (381)
T ss_dssp HHHHHHHHHCSTTTTCCTTHHHHHHTTCBCCCBCSSCBSSCTTSBCCEEEEEEESCEEEECCSSSSSCCCEEEEECTTCE
T ss_pred HHHHHHhhhhHHHHhccHHHHHHHHHhhhhccCCCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCCCceEEEEEeCCCCE
Confidence 34556888899999999999999999999999999999999999999999999999999875 3333 456899999999
Q ss_pred eechhhhcCCCeeeEEEEccceEEEEeeHHHHHHHHHhchhhHHHHHHHHHHHH
Q 006573 450 CGEIGVLCYRPQLFTVRTKRLSQLLRLNRTTFLNIVQANVGDGTIIMNNLLQHL 503 (640)
Q Consensus 450 fGe~~l~~~~~~~~~~~a~~~~~v~~i~~~~f~~ll~~~~~~~~~~~~~l~~~l 503 (640)
|||.+++.+.||.++++|.++|+++.|++++|.+++..+|++....++.....+
T Consensus 324 fGe~all~~~~r~~tv~A~~~~~ll~i~~~~f~~ll~~~~~i~~~~~~~~~~~l 377 (381)
T 4din_B 324 FGEIALLLNRPRAATVVARGPLKCVKLDRPRFERVLGPCSEILKRNIQRYNSFI 377 (381)
T ss_dssp ECTTGGGSCCBCSSEEEESSCBEEEEEEHHHHHHHHCCHHHHHHTTHHHHHHHH
T ss_pred echHHHhCCCCceeEEEEcCCEEEEEEeHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998877766655544
No 57
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=99.55 E-value=3.2e-15 Score=123.26 Aligned_cols=92 Identities=21% Similarity=0.180 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCccCcchHHHHHHHHHhhhhhhcccccCCcccCCchhhH
Q 006573 200 RCCKLIFVTLFAVHCAGCFYYLLAARYHNPERTWIGASLGQNFLEKSLWIRYVTSMYWSITTLTTVGYGDLHPVNTREMV 279 (640)
Q Consensus 200 ~l~~l~~~~~~~~h~~ac~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~y~~s~yw~~~t~ttvGygd~~p~t~~e~~ 279 (640)
.+...++.+++++.+.++++++++.. .+++.+.+|.+|+||+++|+||+||||+.|.|..+++
T Consensus 7 ~~l~~~~~~~~~~~~~a~~~~~~E~~-----------------~~~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~ 69 (103)
T 2k1e_A 7 EAQKAEEELQKVLEEASKKAVEAERG-----------------APGAALISYPDAIWWSVETATTVGYGDRYPVTEEGRK 69 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT-----------------STTCCCCCGGGTTTTTTGGGGCCSCCSSCCCSSSCTH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhccC-----------------CCCcccccHHHHHHHHHHHHhcccCCCCCCCChhHHH
Confidence 34445566666777788888888732 1233445899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q 006573 280 FDILFMLFNLGLTAYLIGNMTNLVVHGTS 308 (640)
Q Consensus 280 ~~i~~~i~g~~~~a~~i~~i~~~~~~~~~ 308 (640)
++++.+++|+.+++++++.+.+.+.+..+
T Consensus 70 ~~~~~~l~G~~~~~~~~~~i~~~~~~~~~ 98 (103)
T 2k1e_A 70 VAEQVMKAGIEVFALVTAALATDFVRREE 98 (103)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHTTGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988876543
No 58
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.51 E-value=9.4e-15 Score=128.43 Aligned_cols=103 Identities=22% Similarity=0.147 Sum_probs=94.7
Q ss_pred CCCCcceeeeeecCCHHHHHHHHhcCCCCCCCCCCCCcccccccccCcccccccccchhHHHHHHhhc----------cc
Q 006573 527 MDLPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFNL----------FY 596 (640)
Q Consensus 527 ~~l~~~l~~a~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~----------~~ 596 (640)
....++++.|+..|+.++++.|+++|+++|.+|..|+||| +.++. ++.+++++|++++ +.
T Consensus 10 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L---------~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~ 79 (136)
T 1d9s_A 10 GSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPI---------QVMMM-GSAQVAELLLLHGAEPNCADPATLT 79 (136)
T ss_dssp CCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTT---------TTSTT-SCHHHHHHHHHHTCCSSCCBTTTTB
T ss_pred CCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHH---------HHHHc-CCHHHHHHHHHCCCCCCCcCCCCCC
Confidence 3556889999999999999999999999999999999999 88888 8999999999874 57
Q ss_pred chhhHhhcCCCHHHHHHHHhccCCCCCCCcccceeeeeecccc
Q 006573 597 FKQHIAASKGSENCVLLLLDYEADPNSIGMLVTKYIIRFFGFV 639 (640)
Q Consensus 597 ~~~h~a~~~g~~~~~~~L~~~ga~~~~~~~~g~~~~~~~~~~~ 639 (640)
+|||+|+..|+.+++++|+++|+|+|.+|..|.||+..|....
T Consensus 80 t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~ 122 (136)
T 1d9s_A 80 RPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQG 122 (136)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHT
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC
Confidence 8999999999999999999999999999999999998876543
No 59
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=99.51 E-value=1.3e-13 Score=115.54 Aligned_cols=62 Identities=29% Similarity=0.506 Sum_probs=53.9
Q ss_pred HHHHHHHhhhhhhcccccCCcccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhH
Q 006573 250 RYVTSMYWSITTLTTVGYGDLHPVNTREMVFDILFMLFNLGLTAYLIGNMTNLVVHGTSRTR 311 (640)
Q Consensus 250 ~y~~s~yw~~~t~ttvGygd~~p~t~~e~~~~i~~~i~g~~~~a~~i~~i~~~~~~~~~~~~ 311 (640)
+|.+|+||+++|+||+||||+.|.|..+++++++.+++|+.++++.++.+.+.+...+...+
T Consensus 49 ~~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~~ 110 (114)
T 2q67_A 49 RPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSILSN 110 (114)
T ss_dssp CHHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------
T ss_pred CHHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999999999999998865544443
No 60
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.50 E-value=6.1e-14 Score=150.63 Aligned_cols=124 Identities=16% Similarity=0.284 Sum_probs=107.9
Q ss_pred hhhHHhhhhccccccCCHHHHHHHHhcccc-ccccCCCeEEEeCCCCCeEEEEEeceEEEEEeeCCceEEEEEecCCCee
Q 006573 372 YLFYSLMDKVYLFRGVSNDLLFQLVSEMKA-EYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQVVGEAKTGEIC 450 (640)
Q Consensus 372 ~~~~~~l~~~~~f~~ls~~~l~~l~~~~~~-~~~~~ge~i~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~f 450 (640)
....++++++++|..++++.+..++..+.. ..|++|++|+++||.++.+|+|.+|.|+++.. |+ ..+..+.+|++|
T Consensus 333 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~~--~~-~~~~~l~~G~~f 409 (469)
T 1o7f_A 333 EIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIY--GK-GVVCTLHEGDDF 409 (469)
T ss_dssp HHHHHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEEEEET--TT-EEEEEEETTCEE
T ss_pred HHHHHHHhcCHhhhhCCHHHHHHHHHHhheeeEecCCCEEEeCCCcCCeEEEEEEeEEEEEEc--CC-eeEEEecCCCEE
Confidence 445678899999999999999999999985 48999999999999999999999999999873 33 378899999999
Q ss_pred echhhhcCCCeeeEEEEcc-ceEEEEeeHHHHHHHHHhchhhHHHHHHH
Q 006573 451 GEIGVLCYRPQLFTVRTKR-LSQLLRLNRTTFLNIVQANVGDGTIIMNN 498 (640)
Q Consensus 451 Ge~~l~~~~~~~~~~~a~~-~~~v~~i~~~~f~~ll~~~~~~~~~~~~~ 498 (640)
||.+++.+.|+.++++|.+ +|+++.|++++|.+++.++|+....+.+.
T Consensus 410 Ge~~ll~~~~~~~tv~a~~~~~~~~~i~~~~f~~ll~~~p~~~~~l~e~ 458 (469)
T 1o7f_A 410 GKLALVNDAPRAASIVLREDNCHFLRVDKEDFNRILRDVEANTVRLKEH 458 (469)
T ss_dssp CGGGGTCCSCCSSEEEESSSSEEEEEEEHHHHHHHHHHTTCC-------
T ss_pred EEehhhcCCCceEEEEEecCCEEEEEEcHHHHHHHHHHChHHHHHHHhc
Confidence 9999999999999999998 79999999999999999999988766543
No 61
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=99.48 E-value=1.1e-13 Score=129.75 Aligned_cols=115 Identities=18% Similarity=0.192 Sum_probs=103.1
Q ss_pred ccccCCCeEEEeCCCCCeEEEEEeceEEEEEe-eCCceEEEEEecCCCeeechhhhcCCCeeeEEEEccceEEEEeeHHH
Q 006573 402 EYFPPKEDVILQNEAPTDFYILVTGAVDLLVL-KNGVEQVVGEAKTGEICGEIGVLCYRPQLFTVRTKRLSQLLRLNRTT 480 (640)
Q Consensus 402 ~~~~~ge~i~~~g~~~~~ly~I~~G~v~v~~~-~~g~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~a~~~~~v~~i~~~~ 480 (640)
+.|++|++|+++||+++.+|+|.+|.|+++.. .+|++.++..+.+|++||+ +++.+.|+.++++|.++|+++.|++++
T Consensus 2 ~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~Ge-~~~~~~~~~~~~~A~~~~~v~~i~~~~ 80 (195)
T 3b02_A 2 KRFARKETIYLRGEEARTLYRLEEGLVRVVELLPDGRLITLRHVLPGDYFGE-EALEGKAYRYTAEAMTEAVVQGLEPRA 80 (195)
T ss_dssp EEECTTCEEECTTSBCCCEEEEEESCEEEEEECTTSCEEEEEEECTTCEECG-GGGTCSBCSSEEEESSSEEEEEECGGG
T ss_pred eEcCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEecCCCEech-hhhCCCCceeEEEECCcEEEEEEcHHH
Confidence 57899999999999999999999999999874 6788889999999999999 999999999999999999999999999
Q ss_pred HHHHHHhchhhHHHHHHHHHHHHHcccchhhhhhhhhhHhhhh
Q 006573 481 FLNIVQANVGDGTIIMNNLLQHLKDLKDPIMEGVLLETENMLA 523 (640)
Q Consensus 481 f~~ll~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~rl~ 523 (640)
|. |++...+.+.+..++....+........+..+|++
T Consensus 81 ~~------p~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~Rl~ 117 (195)
T 3b02_A 81 MD------HEALHRVARNLARQMRRVQAYEAHLQTGELRARIA 117 (195)
T ss_dssp CC------HHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred cC------HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 97 99999999999988877766666666666676665
No 62
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.48 E-value=2.1e-14 Score=126.28 Aligned_cols=102 Identities=27% Similarity=0.265 Sum_probs=93.6
Q ss_pred CCCCcceeeeeecCCHHHHHHHHhcCCCCCCCCCCCCcccccccccCcccccccccchhHHHHHHhhc---------ccc
Q 006573 527 MDLPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFNL---------FYF 597 (640)
Q Consensus 527 ~~l~~~l~~a~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~---------~~~ 597 (640)
....++++.|+..|+.++++.|+++|+++|.+|..|+||| |+++..++.+++++|++++ +.+
T Consensus 8 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L---------~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t 78 (137)
T 3c5r_A 8 HRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPL---------HEACNHGHLKVVELLLQHKALVNTTGYQNDS 78 (137)
T ss_dssp TTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHH---------HHHHHTTCHHHHHHHHHTTCCTTCCCGGGCC
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHH---------HHHHHcCCHHHHHHHHHcCCcccCcCCCCCC
Confidence 3557889999999999999999999999999999999999 7777778899999999875 556
Q ss_pred hhhHhhcCCCHHHHHHHHhccCCCCCCCcccceeeeeecc
Q 006573 598 KQHIAASKGSENCVLLLLDYEADPNSIGMLVTKYIIRFFG 637 (640)
Q Consensus 598 ~~h~a~~~g~~~~~~~L~~~ga~~~~~~~~g~~~~~~~~~ 637 (640)
|||+|+..|+.+++++|+++|+|++.+|..|.+|+..|..
T Consensus 79 ~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~ 118 (137)
T 3c5r_A 79 PLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDD 118 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCC
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhh
Confidence 9999999999999999999999999999999999987754
No 63
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.47 E-value=1.8e-14 Score=124.13 Aligned_cols=98 Identities=22% Similarity=0.219 Sum_probs=89.8
Q ss_pred CcceeeeeecCCHHHHHHHHhcCCCCCCCCCCCCcccccccccCcccccccccchhHHHHHHhhc---------ccchhh
Q 006573 530 PLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFNL---------FYFKQH 600 (640)
Q Consensus 530 ~~~l~~a~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~---------~~~~~h 600 (640)
.++++.|+..|+.+.++.|++.|+++|.+|..|+||| ++++..++.+++++|++++ +.+|||
T Consensus 8 ~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L---------~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~ 78 (123)
T 3aaa_C 8 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPL---------HYAADCGQLEILEFLLLKGADINAPDKHHITPLL 78 (123)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHH---------HHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHH
T ss_pred chHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHH---------HHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHH
Confidence 4677889999999999999999999999999999999 7777778899999999885 566999
Q ss_pred HhhcCCCHHHHHHHHhccCCCCCCCcccceeeeeec
Q 006573 601 IAASKGSENCVLLLLDYEADPNSIGMLVTKYIIRFF 636 (640)
Q Consensus 601 ~a~~~g~~~~~~~L~~~ga~~~~~~~~g~~~~~~~~ 636 (640)
+|+..|+.+++++|+++|+|++.+|..|.+|+..|.
T Consensus 79 ~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~ 114 (123)
T 3aaa_C 79 SAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATD 114 (123)
T ss_dssp HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCC
T ss_pred HHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhC
Confidence 999999999999999999999999999999998763
No 64
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.47 E-value=1.5e-14 Score=127.17 Aligned_cols=102 Identities=26% Similarity=0.213 Sum_probs=92.7
Q ss_pred CCcceeeeeecCCHHHHHHHHhcCCCCCCCCCCCCcccccccccCcccccccccchhHHHHHHhhc---------ccchh
Q 006573 529 LPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFNL---------FYFKQ 599 (640)
Q Consensus 529 l~~~l~~a~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~---------~~~~~ 599 (640)
..++++.|+..|+.++++.|+++|+++|.+|..|+||| +.++..+..+++++|++++ +.+||
T Consensus 14 ~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L---------~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L 84 (136)
T 2jab_A 14 LGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPL---------YLATAHGHLEIVEVLLKNGADVNAVDAIGFTPL 84 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHH---------HHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHH
T ss_pred ccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHH---------HHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHH
Confidence 34678889999999999999999999999999999999 7777778899999999986 55689
Q ss_pred hHhhcCCCHHHHHHHHhccCCCCCCCcccceeeeeecccc
Q 006573 600 HIAASKGSENCVLLLLDYEADPNSIGMLVTKYIIRFFGFV 639 (640)
Q Consensus 600 h~a~~~g~~~~~~~L~~~ga~~~~~~~~g~~~~~~~~~~~ 639 (640)
|+|+..|+.+++++|+++|++++.+|.+|.+|+..|....
T Consensus 85 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~ 124 (136)
T 2jab_A 85 HLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNG 124 (136)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCC
Confidence 9999999999999999999999999999999998876543
No 65
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.46 E-value=2.8e-14 Score=128.61 Aligned_cols=95 Identities=22% Similarity=0.189 Sum_probs=44.1
Q ss_pred cceeeeeecCCHHHHHHHHhcCCCCCCCCCCCCcccccccccCcccccccccchhHHHHHHhhc---------ccc-hhh
Q 006573 531 LSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFNL---------FYF-KQH 600 (640)
Q Consensus 531 ~~l~~a~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~---------~~~-~~h 600 (640)
++++.|+..|+.++++.|+++|+++|.+|..|+||| +++. .++.+++++|+++| +.+ |||
T Consensus 14 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L---------~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~ 83 (156)
T 1bi7_B 14 DWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPI---------QVMM-MGSARVAELLLLHGAEPNCADPATLTRPVH 83 (156)
T ss_dssp THHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTT---------TSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHH---------HHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHH
Confidence 344444444444444444444444444444444554 2221 33444444444442 222 444
Q ss_pred HhhcCCCHHHHHHHHhccCCCCCCCcccceeeeee
Q 006573 601 IAASKGSENCVLLLLDYEADPNSIGMLVTKYIIRF 635 (640)
Q Consensus 601 ~a~~~g~~~~~~~L~~~ga~~~~~~~~g~~~~~~~ 635 (640)
+|+..|+.+++++|+++||++|.+|..|.+||+.|
T Consensus 84 ~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A 118 (156)
T 1bi7_B 84 DAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLA 118 (156)
T ss_dssp HHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHH
T ss_pred HHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHH
Confidence 44444444444444444444444444444444444
No 66
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.46 E-value=1.5e-13 Score=160.88 Aligned_cols=128 Identities=21% Similarity=0.247 Sum_probs=114.7
Q ss_pred HHhHHHHhhhHHhhhhccccccCCHHHHHHHHhccccccccCCCeEEEeCCCCCeEEEEEeceEEEEEe---eCCceEEE
Q 006573 365 IRSSISHYLFYSLMDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVL---KNGVEQVV 441 (640)
Q Consensus 365 lr~~i~~~~~~~~l~~~~~f~~ls~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~v~~~---~~g~~~~~ 441 (640)
-|.+-..+.....|+++++|+++++..+.+++..+..+.|++|++||++||.++.+|+|.+|.|.|+.. .++.+..+
T Consensus 31 ~Rt~edl~~I~~~Lk~~~~f~~l~~~~l~~l~~~m~ye~~~~Ge~IfrqGd~gd~fYIIlsGsV~V~i~~~~~~~~~~~v 110 (999)
T 4f7z_A 31 ERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQDAVTI 110 (999)
T ss_dssp SCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEECSSSCTTSCEEE
T ss_pred cCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHhheEEEEECCCCEEEcCCCcCCEEEEEEeeEEEEEEecCCCCCCceeE
Confidence 455545566677899999999999999999999999999999999999999999999999999999874 23456688
Q ss_pred EEecCCCeeechhhhcCCCeeeEEEEccceEEEEeeHHHHHHHHHhchhhHH
Q 006573 442 GEAKTGEICGEIGVLCYRPQLFTVRTKRLSQLLRLNRTTFLNIVQANVGDGT 493 (640)
Q Consensus 442 ~~l~~G~~fGe~~l~~~~~~~~~~~a~~~~~v~~i~~~~f~~ll~~~~~~~~ 493 (640)
..+.+|+.||| +++.+.||+++++|.++|++++|++++|..+++.+|+...
T Consensus 111 ~~l~~G~sFGE-all~n~pRtaTv~a~~~s~l~~l~r~~F~~i~~~~~e~~~ 161 (999)
T 4f7z_A 111 CTLGIGTAFGE-SILDNTPRHATIVTRESSELLRIEQEDFKALWEKYRQYMA 161 (999)
T ss_dssp EEEETTCEECG-GGGGTCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHHHT
T ss_pred EEecCCcchhh-hhccCCCcceEEEeccceEEEEEEHHHHHHHHHhChHHHH
Confidence 99999999999 8999999999999999999999999999999999886543
No 67
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.45 E-value=5.8e-14 Score=128.72 Aligned_cols=109 Identities=17% Similarity=0.055 Sum_probs=97.2
Q ss_pred hhccCCCCCcceeeeeecCCHHHHHHHHhcCCCCCCCCCCCCcccccccccCcccccccccchhHHHHHHhhc-------
Q 006573 522 LARGRMDLPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFNL------- 594 (640)
Q Consensus 522 l~~g~~~l~~~l~~a~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~------- 594 (640)
+...+....++++.|+..|+.++++.|+++|+++|..|..|+||| +.++..++.+++++|++++
T Consensus 29 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L---------~~A~~~~~~~~v~~Ll~~g~~~~~~~ 99 (172)
T 3v30_A 29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESAL---------SLASTGGYTDIVGLLLERDVDINIYD 99 (172)
T ss_dssp GGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHH---------HHHHHTTCHHHHHHHHTTTCCTTCCC
T ss_pred ccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHH---------HHHHHCCCHHHHHHHHHcCCCCCCCC
Confidence 334445667889999999999999999999999999999999999 7777778899999999885
Q ss_pred --ccchhhHhhcCCCHHHHHHHHhccCCCCCCCcccceeeeeecccc
Q 006573 595 --FYFKQHIAASKGSENCVLLLLDYEADPNSIGMLVTKYIIRFFGFV 639 (640)
Q Consensus 595 --~~~~~h~a~~~g~~~~~~~L~~~ga~~~~~~~~g~~~~~~~~~~~ 639 (640)
+.+|+|+|+..|+.+++++|+++|+|++.+|..|.||+..|....
T Consensus 100 ~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~ 146 (172)
T 3v30_A 100 WNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALG 146 (172)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhC
Confidence 566999999999999999999999999999999999998876544
No 68
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=99.45 E-value=4.3e-14 Score=139.67 Aligned_cols=103 Identities=20% Similarity=0.146 Sum_probs=94.0
Q ss_pred CCCCCcceeeeeecCCHHHHHHHHhcCCCCCCCCCCCCcccccccccCcccccccccchhHHHHHHhhc---------cc
Q 006573 526 RMDLPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFNL---------FY 596 (640)
Q Consensus 526 ~~~l~~~l~~a~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~---------~~ 596 (640)
.....++++.++..++.++++.|++.|+++|.+|..|+||| ++++..++.+++++|+++| +.
T Consensus 116 ~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL---------~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~ 186 (269)
T 4b93_B 116 NADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPL---------IYACSGGHHELVALLLQHGASINASNNKGN 186 (269)
T ss_dssp CTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHH---------HHHHHTTCGGGHHHHHHTTCCTTCBCTTSC
T ss_pred CCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHH---------HHHHHCCCHHHHHHHHHCCCCCCccccCCC
Confidence 33456788899999999999999999999999999999999 7777778899999999986 56
Q ss_pred chhhHhhcCCCHHHHHHHHhccCCCCCCCcccceeeeeecc
Q 006573 597 FKQHIAASKGSENCVLLLLDYEADPNSIGMLVTKYIIRFFG 637 (640)
Q Consensus 597 ~~~h~a~~~g~~~~~~~L~~~ga~~~~~~~~g~~~~~~~~~ 637 (640)
+|||+|+..|+.++|++|+++|||+|.+|.+|+|||..|..
T Consensus 187 t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~ 227 (269)
T 4b93_B 187 TALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQ 227 (269)
T ss_dssp BHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCT
T ss_pred cHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHh
Confidence 69999999999999999999999999999999999988754
No 69
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.45 E-value=5.8e-14 Score=129.68 Aligned_cols=106 Identities=16% Similarity=0.079 Sum_probs=95.6
Q ss_pred hccCCCCCcceeeeeecCCHHHHHHHHhcCCCCCCCCCCCCcccccccccCcccccccccchhHHHHHHhhc--------
Q 006573 523 ARGRMDLPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFNL-------- 594 (640)
Q Consensus 523 ~~g~~~l~~~l~~a~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~-------- 594 (640)
...+....++++.|+..|+.++++.|+++|+++|.+|..|.||| +.++..++.+++++|+++|
T Consensus 33 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L---------~~A~~~~~~~~v~~Ll~~g~~~~~~d~ 103 (179)
T 3f6q_A 33 NQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPL---------HLAASHGHRDIVQKLLQYKADINAVNE 103 (179)
T ss_dssp TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHH---------HHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred cccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHH---------HHHHHcCCHHHHHHHHHcCCCCCccCC
Confidence 33444567889999999999999999999999999999999999 7777778899999999986
Q ss_pred -ccchhhHhhcCCCHHHHHHHHhccCCCCCCCcccceeeeeecc
Q 006573 595 -FYFKQHIAASKGSENCVLLLLDYEADPNSIGMLVTKYIIRFFG 637 (640)
Q Consensus 595 -~~~~~h~a~~~g~~~~~~~L~~~ga~~~~~~~~g~~~~~~~~~ 637 (640)
+.+|||+|+..|+.+++++|+++||+++.+|..|.+|+..|..
T Consensus 104 ~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~ 147 (179)
T 3f6q_A 104 HGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKA 147 (179)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHH
Confidence 5569999999999999999999999999999999999987754
No 70
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.45 E-value=9.5e-14 Score=126.32 Aligned_cols=101 Identities=24% Similarity=0.172 Sum_probs=92.7
Q ss_pred CCCCcceeeeeecCCHHHHHHHHhcCCCCCCCCCCCCcccccccccCcccccccccchhHHHHHHhhc---------ccc
Q 006573 527 MDLPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFNL---------FYF 597 (640)
Q Consensus 527 ~~l~~~l~~a~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~---------~~~ 597 (640)
....++++.|+..|+.++++.|+++|+++|.+|..|+||| +.++..++.+++++|++++ +.+
T Consensus 40 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L---------~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t 110 (165)
T 3twr_A 40 GRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPL---------HNACSYGHYEVAELLVKHGAVVNVADLWKFT 110 (165)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH---------HHHHHTTCHHHHHHHHHTTCCTTCCCTTCCC
T ss_pred cCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHH---------HHHHHcCcHHHHHHHHhCCCCCCCcCCCCCC
Confidence 3456889999999999999999999999999999999999 7777778899999999986 556
Q ss_pred hhhHhhcCCCHHHHHHHHhccCCCCCCCcccceeeeeec
Q 006573 598 KQHIAASKGSENCVLLLLDYEADPNSIGMLVTKYIIRFF 636 (640)
Q Consensus 598 ~~h~a~~~g~~~~~~~L~~~ga~~~~~~~~g~~~~~~~~ 636 (640)
|+|+|+..|+.+++++|+++|+|++.+|..|+||+..|.
T Consensus 111 ~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~ 149 (165)
T 3twr_A 111 PLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK 149 (165)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSC
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHh
Confidence 999999999999999999999999999999999998754
No 71
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=99.44 E-value=3.1e-13 Score=149.91 Aligned_cols=134 Identities=17% Similarity=0.282 Sum_probs=116.6
Q ss_pred HHHhhhhHHHHhHHHHhhhHHhhhhccccccCCHHHHHHHHhccc-cccccCCCeEEEeCCCCCeEEEEEeceEEEEEee
Q 006573 356 ETLDSLPKAIRSSISHYLFYSLMDKVYLFRGVSNDLLFQLVSEMK-AEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLK 434 (640)
Q Consensus 356 ~~l~~lp~~lr~~i~~~~~~~~l~~~~~f~~ls~~~l~~l~~~~~-~~~~~~ge~i~~~g~~~~~ly~I~~G~v~v~~~~ 434 (640)
.++.. |+..|.+.......+.++++++|..++++.++.++..+. .+.|++|++|+++||.++.+|+|.+|.|+++..
T Consensus 13 ~iL~k-~p~~r~~~d~~~l~~~L~~~~lF~~Ls~~~l~~L~~~~~~~~~~~kGe~I~~eGd~~~~lyiIlsG~V~v~~~- 90 (694)
T 3cf6_E 13 MILRK-PPGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIY- 90 (694)
T ss_dssp HHHHS-CGGGCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHHTTCEEEEECSTTCEEECTTSBCCEEEEEEESEEEEEET-
T ss_pred HHHcC-ChhhCCHHHHHHHHHHHHcChhhccCCHHHHHHHHHhcceEEEECCCCEEECCCCcCCeEEEEEEEEEEEEEe-
Confidence 34433 333355444555677899999999999999999999998 689999999999999999999999999999874
Q ss_pred CCceEEEEEecCCCeeechhhhcCCCeeeEEEEcc-ceEEEEeeHHHHHHHHHhchhhHH
Q 006573 435 NGVEQVVGEAKTGEICGEIGVLCYRPQLFTVRTKR-LSQLLRLNRTTFLNIVQANVGDGT 493 (640)
Q Consensus 435 ~g~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~a~~-~~~v~~i~~~~f~~ll~~~~~~~~ 493 (640)
|+ .++..+.+|++||+.+++.+.++.++++|.+ +|+++.|++++|.++++++|+...
T Consensus 91 -g~-~il~~l~~Gd~fGe~al~~~~~~~~tv~A~edd~~ll~I~~~~f~~ll~~~p~l~~ 148 (694)
T 3cf6_E 91 -GK-GVVCTLHEGDDFGKLALVNDAPRAASIVLREDNCHFLRVDKEDFNRILRDVEANTV 148 (694)
T ss_dssp -TT-EEEEEEETTCEECHHHHHHTCBCSSEEEECSSSEEEEEEEHHHHHHHTTTTCCCCE
T ss_pred -CC-EEEEEeCCCCEeehHHHhCCCCceEEEEEeeCceEEEEEeHHHHHHHHHHCHHHHH
Confidence 43 5789999999999999999999999999999 599999999999999999998754
No 72
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.43 E-value=5.1e-14 Score=126.38 Aligned_cols=105 Identities=20% Similarity=0.155 Sum_probs=95.4
Q ss_pred CCCCcceeeeeecCCHHHHHHHHhcCCCCCCCCCCCCcccccccccCcccccccccchhHHHHHHhhc---------ccc
Q 006573 527 MDLPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFNL---------FYF 597 (640)
Q Consensus 527 ~~l~~~l~~a~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~---------~~~ 597 (640)
....++++.|+..|+.++++.|++.|+++|.+|..|+||| +.++..++.+++++|+++| +.+
T Consensus 32 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L---------~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t 102 (153)
T 1awc_B 32 WLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPL---------HMAASEGHANIVEVLLKHGADVNAKDMLKMT 102 (153)
T ss_dssp TTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHH---------HHHHHHTCHHHHHHHHTTTCCTTCCCTTSCC
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHH---------HHHHHcChHHHHHHHHHcCCCCCCCCCCCCC
Confidence 3466889999999999999999999999999999999999 7777778899999999986 566
Q ss_pred hhhHhhcCCCHHHHHHHHhccCCCCCCCcccceeeeeeccccC
Q 006573 598 KQHIAASKGSENCVLLLLDYEADPNSIGMLVTKYIIRFFGFVH 640 (640)
Q Consensus 598 ~~h~a~~~g~~~~~~~L~~~ga~~~~~~~~g~~~~~~~~~~~~ 640 (640)
|+|+|+..|+.+++++|+++|+|++.+|.+|.+|+..|....|
T Consensus 103 ~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~ 145 (153)
T 1awc_B 103 ALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGN 145 (153)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCC
Confidence 9999999999999999999999999999999999988766543
No 73
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=99.42 E-value=8.9e-13 Score=103.31 Aligned_cols=54 Identities=28% Similarity=0.650 Sum_probs=51.9
Q ss_pred HHHHHHHhhhhhhcccccCCcccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006573 250 RYVTSMYWSITTLTTVGYGDLHPVNTREMVFDILFMLFNLGLTAYLIGNMTNLV 303 (640)
Q Consensus 250 ~y~~s~yw~~~t~ttvGygd~~p~t~~e~~~~i~~~i~g~~~~a~~i~~i~~~~ 303 (640)
+|.+|+||+++|+||+||||+.|.|..+|+++++.+++|+.++++.++.+++.+
T Consensus 28 ~~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 28 SWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688999999999999999999999999999999999999999999999998765
No 74
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.41 E-value=2.2e-13 Score=124.45 Aligned_cols=105 Identities=26% Similarity=0.163 Sum_probs=95.3
Q ss_pred CCCCCcceeeeeecCCHHHHHHHHhcCCCCCCCCCCCCcccccccccCcccccccccchhHHHHHHhhc---------cc
Q 006573 526 RMDLPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFNL---------FY 596 (640)
Q Consensus 526 ~~~l~~~l~~a~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~---------~~ 596 (640)
+....++++.|+..|+.++++.|+++|+++|..|..|+||| +.++..++.+++++|+++| +.
T Consensus 44 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L---------~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~ 114 (169)
T 2y1l_E 44 DASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPL---------RLAALFGHLEIVEVLLKNGADVNANDMEGH 114 (169)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH---------HHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHH---------HHHHHcCCHHHHHHHHHcCCCCCCCCCCCC
Confidence 34567889999999999999999999999999999999999 7777778899999999985 55
Q ss_pred chhhHhhcCCCHHHHHHHHhccCCCCCCCcccceeeeeecccc
Q 006573 597 FKQHIAASKGSENCVLLLLDYEADPNSIGMLVTKYIIRFFGFV 639 (640)
Q Consensus 597 ~~~h~a~~~g~~~~~~~L~~~ga~~~~~~~~g~~~~~~~~~~~ 639 (640)
+|+|+|+..|+.+++++|+++|+|++.+|..|.+|+..|....
T Consensus 115 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~ 157 (169)
T 2y1l_E 115 TPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNG 157 (169)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhC
Confidence 6999999999999999999999999999999999998876554
No 75
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=99.40 E-value=1.3e-12 Score=106.02 Aligned_cols=82 Identities=29% Similarity=0.551 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCccCcchHHHHHHHHHhhhhhhcccccCCcccCCchhhHH
Q 006573 201 CCKLIFVTLFAVHCAGCFYYLLAARYHNPERTWIGASLGQNFLEKSLWIRYVTSMYWSITTLTTVGYGDLHPVNTREMVF 280 (640)
Q Consensus 201 l~~l~~~~~~~~h~~ac~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~y~~s~yw~~~t~ttvGygd~~p~t~~e~~~ 280 (640)
....++.++++..+.+++.|...+ + .+|.+|+||+++|+||+||||+.|.|..++++
T Consensus 6 ~~~~~~~~~~~~~~~g~~~~~~~e-------------------~----~~~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~ 62 (97)
T 3ouf_A 6 EFQVLFVLTILTLISGTIFYSTVE-------------------G----LRPIDALYFSVVTLTTVGYGDFSPQTDFGKIF 62 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS-------------------C----CCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-------------------C----CCHHHHHHHHHHHHHccCCCCCCCCCccHHHH
Confidence 344455556666677777775441 1 26899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 006573 281 DILFMLFNLGLTAYLIGNMTNLVVH 305 (640)
Q Consensus 281 ~i~~~i~g~~~~a~~i~~i~~~~~~ 305 (640)
+++.+++|+.++++.++.+++.++.
T Consensus 63 ~~~~~~~G~~~~~~~i~~i~~~~~~ 87 (97)
T 3ouf_A 63 TILYIFIGIGLVFGFIHKLAVNVQL 87 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 9999999999999999999877654
No 76
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=99.39 E-value=6e-13 Score=125.49 Aligned_cols=121 Identities=15% Similarity=0.110 Sum_probs=104.3
Q ss_pred HhccccccccCCCeEEEeCCCC--CeEEEEEeceEEEEEe-eCCceEEEEEecCCCeeechhhhcCCCeeeEEEEccceE
Q 006573 396 VSEMKAEYFPPKEDVILQNEAP--TDFYILVTGAVDLLVL-KNGVEQVVGEAKTGEICGEIGVLCYRPQLFTVRTKRLSQ 472 (640)
Q Consensus 396 ~~~~~~~~~~~ge~i~~~g~~~--~~ly~I~~G~v~v~~~-~~g~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~a~~~~~ 472 (640)
...++...|++|++|+.+||++ +.+|+|.+|.|+++.. .+|++.++..+.+|++||+ +++.+.|+.++++|.++|+
T Consensus 2 ~~~~~~~~~~~g~~i~~~g~~~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~-~~l~~~~~~~~~~A~~~~~ 80 (202)
T 2zcw_A 2 TQVRETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNALTLRLVRPGGFFGE-EALFGQERIYFAEAATDVR 80 (202)
T ss_dssp ----CCEEECTTCEEECSBSCCTTCCCEEEEESCEEEEEECTTSCEEEEEEECTTCEECT-HHHHTCCBCSEEEESSCEE
T ss_pred CccceEEEECCCCEEECCCCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCCEeee-hhcCCCCcceEEEEcccEE
Confidence 4567889999999999999999 9999999999999874 6788899999999999999 8899999999999999999
Q ss_pred EEEeeHHHHHHHHHhchhhHHHHHHHHHHHHHcccchhhhhhhhhhHhhhhc
Q 006573 473 LLRLNRTTFLNIVQANVGDGTIIMNNLLQHLKDLKDPIMEGVLLETENMLAR 524 (640)
Q Consensus 473 v~~i~~~~f~~ll~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~rl~~ 524 (640)
++.+ +++|. |++...+.+.+..++.............+.++|++.
T Consensus 81 v~~i-~~~~~------p~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Rl~~ 125 (202)
T 2zcw_A 81 LEPL-PENPD------PELLKDLAQHLSQGLAEAYRRIERLATQRLKNRMAA 125 (202)
T ss_dssp EEEC-CSSCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred EEEE-hHhcC------HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 9999 98886 888888888888888777666666667777777763
No 77
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.39 E-value=1.4e-13 Score=116.89 Aligned_cols=97 Identities=26% Similarity=0.245 Sum_probs=87.0
Q ss_pred CCCCCcceeeeeecCCHHHHHHHHhcCCCCCCCCCCCCcccccccccCcccccccccchhHHHHHHhhc---------cc
Q 006573 526 RMDLPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFNL---------FY 596 (640)
Q Consensus 526 ~~~l~~~l~~a~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~---------~~ 596 (640)
+....++++.|+..|+.++++.|+++|+++|.+|..|+||| +.++..+..+++++|+++| +.
T Consensus 6 d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L---------~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~ 76 (115)
T 2l6b_A 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPL---------HLAAKNGHAEIVKLLLAKGADVNARSKDGN 76 (115)
T ss_dssp SCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTT---------HHHHTTTCHHHHHHHTTTTCCTTCCCTTCC
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHH---------HHHHHcCcHHHHHHHHHcCCCCcccCCCCC
Confidence 34567888999999999999999999999999999999999 7777778899999999886 55
Q ss_pred chhhHhhcCCCHHHHHHHHhccCCCCCCCccccee
Q 006573 597 FKQHIAASKGSENCVLLLLDYEADPNSIGMLVTKY 631 (640)
Q Consensus 597 ~~~h~a~~~g~~~~~~~L~~~ga~~~~~~~~g~~~ 631 (640)
+|+|+|+..|+.+++++|+++|||+|.++..|.+|
T Consensus 77 tpl~~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~ 111 (115)
T 2l6b_A 77 TPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHH 111 (115)
T ss_dssp CTTHHHHTTTCHHHHHHHHTTSSSHHHHSCCCC--
T ss_pred CHHHHHHHCCCHHHHHHHHHcCCCCCcCCcccccc
Confidence 68999999999999999999999999999999987
No 78
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.39 E-value=2e-13 Score=124.45 Aligned_cols=106 Identities=21% Similarity=0.143 Sum_probs=95.7
Q ss_pred cCCCCCcceeeeeecCCHHHHHHHHhcCCCCCCCCCCCCcccccccccCcccccccccchhHHHHHHhhc---------c
Q 006573 525 GRMDLPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFNL---------F 595 (640)
Q Consensus 525 g~~~l~~~l~~a~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~---------~ 595 (640)
.+....+++++|+..|+.++++.|+++|+++|..|..|+||| +.++..++.+++++|++++ +
T Consensus 32 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L---------~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g 102 (167)
T 3v31_A 32 TDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESAL---------SLACSKGYTDIVKMLLDCGVDVNEYDWNG 102 (167)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHH---------HHHHHHTCHHHHHHHHHHTCCTTCCCTTS
T ss_pred CCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHH---------HHHHHcCCHHHHHHHHHCCCCCCcCCCCC
Confidence 344567889999999999999999999999999999999999 7777778899999999985 5
Q ss_pred cchhhHhhcCCCHHHHHHHHhccCCCCCCCcccceeeeeecccc
Q 006573 596 YFKQHIAASKGSENCVLLLLDYEADPNSIGMLVTKYIIRFFGFV 639 (640)
Q Consensus 596 ~~~~h~a~~~g~~~~~~~L~~~ga~~~~~~~~g~~~~~~~~~~~ 639 (640)
.+|+|+|+..|+.+++++|+++|+|++.+|..|.+|+..|....
T Consensus 103 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~ 146 (167)
T 3v31_A 103 GTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALG 146 (167)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence 66999999999999999999999999999999999998876544
No 79
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.38 E-value=2e-13 Score=127.60 Aligned_cols=106 Identities=22% Similarity=0.170 Sum_probs=95.5
Q ss_pred CCCCCcceeeeeecCCHHHHHHHHhcCCCCCCCCCCCCcccccccccCcccccccccchhHHHHHHhhc---------cc
Q 006573 526 RMDLPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFNL---------FY 596 (640)
Q Consensus 526 ~~~l~~~l~~a~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~---------~~ 596 (640)
+....+++++|+..|+.++++.|+++|+++|.+|..|.||| ++++..++.+++++|+++| +.
T Consensus 65 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L---------~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~ 135 (192)
T 2rfm_A 65 DIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPL---------MWSIIFGYSEMSYFLLEHGANVNDRNLEGE 135 (192)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHH---------HHHHHHTCHHHHHHHHHTTCCSSCCCTTCC
T ss_pred cccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHH---------HHHHHcCCHHHHHHHHHCCCCCCCCCCCCC
Confidence 44567889999999999999999999999999999999999 7777778899999999886 56
Q ss_pred chhhHhhcCCCHHHHHHHHhccCCCCCCCcccceeeeeeccccC
Q 006573 597 FKQHIAASKGSENCVLLLLDYEADPNSIGMLVTKYIIRFFGFVH 640 (640)
Q Consensus 597 ~~~h~a~~~g~~~~~~~L~~~ga~~~~~~~~g~~~~~~~~~~~~ 640 (640)
+|+|+|+..|+.+++++|+++|+|++.+|..|.||+..|....|
T Consensus 136 t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~ 179 (192)
T 2rfm_A 136 TPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGR 179 (192)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTC
T ss_pred CHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCc
Confidence 69999999999999999999999999999999999988765543
No 80
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.38 E-value=1.7e-13 Score=111.49 Aligned_cols=76 Identities=34% Similarity=0.333 Sum_probs=62.9
Q ss_pred CcceeeeeecCCHHHHHHHHhcCCCCCCCCCCCCcccccccccCcccccccccchhHHHHHHhhcccchhhHhhcCCCHH
Q 006573 530 PLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFNLFYFKQHIAASKGSEN 609 (640)
Q Consensus 530 ~~~l~~a~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~h~a~~~g~~~ 609 (640)
.++++.|+..|+.++++.|+++|+++|.+|..|+||| |+|+..|+.+
T Consensus 3 ~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L---------------------------------~~A~~~~~~~ 49 (93)
T 1n0q_A 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPL---------------------------------HLAARNGHLE 49 (93)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHH---------------------------------HHHHHTTCHH
T ss_pred CcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHH---------------------------------HHHHHcCCHH
Confidence 5678899999999999999999999999999999999 7777777777
Q ss_pred HHHHHHhccCCCCCCCcccceeeeeeccc
Q 006573 610 CVLLLLDYEADPNSIGMLVTKYIIRFFGF 638 (640)
Q Consensus 610 ~~~~L~~~ga~~~~~~~~g~~~~~~~~~~ 638 (640)
++++|+++|+|+|.+|..|+||++.|...
T Consensus 50 ~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~ 78 (93)
T 1n0q_A 50 VVKLLLEAGADVNAKDKNGRTPLHLAARN 78 (93)
T ss_dssp HHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred HHHHHHHcCCCCCccCCCCCCHHHHHHHc
Confidence 77777777777777777777777665543
No 81
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.37 E-value=4.6e-13 Score=120.43 Aligned_cols=104 Identities=17% Similarity=0.111 Sum_probs=93.7
Q ss_pred CCCCCcceeeeeecCCHHHHHHHHhcCCCCCCCCCCCCcccccccccCcccccccccchhHHHHHHhhc---------cc
Q 006573 526 RMDLPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFNL---------FY 596 (640)
Q Consensus 526 ~~~l~~~l~~a~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~---------~~ 596 (640)
+....++++. +..|+.++++.|+++|+++|.+|..|+||| +.++..+..+++++|+++| +.
T Consensus 33 ~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L---------~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~ 102 (156)
T 1bd8_A 33 NRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPV---------HDAARTGFLDTLKVLVEHGADVNVPDGTGA 102 (156)
T ss_dssp CTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHH---------HHHHHTTCHHHHHHHHHTTCCSCCCCTTSC
T ss_pred CCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHH---------HHHHHcCcHHHHHHHHHcCCCCCCcCCCCC
Confidence 3456788899 999999999999999999999999999999 7777778899999999986 56
Q ss_pred chhhHhhcCCCHHHHHHHHhccCCCCCCCcccceeeeeeccccC
Q 006573 597 FKQHIAASKGSENCVLLLLDYEADPNSIGMLVTKYIIRFFGFVH 640 (640)
Q Consensus 597 ~~~h~a~~~g~~~~~~~L~~~ga~~~~~~~~g~~~~~~~~~~~~ 640 (640)
+|+|+|+..|+.+++++|+++ ++++.+|.+|.+|+..|....|
T Consensus 103 t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~ 145 (156)
T 1bd8_A 103 LPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGA 145 (156)
T ss_dssp CHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCC
T ss_pred cHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCc
Confidence 699999999999999999999 9999999999999998876543
No 82
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.37 E-value=2e-13 Score=123.73 Aligned_cols=105 Identities=18% Similarity=0.088 Sum_probs=93.2
Q ss_pred CCCCCcceeeeeecCCHHHHHHHHhcCCCCCCCCCCCCcccccccccCcccccccccchhHHHHHHhhc---------cc
Q 006573 526 RMDLPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFNL---------FY 596 (640)
Q Consensus 526 ~~~l~~~l~~a~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~---------~~ 596 (640)
+....++++.|+. |+.++++.|+++|+++|.+|..|.||| +.++..+..+++++|+++| +.
T Consensus 35 ~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L---------~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~ 104 (162)
T 1ihb_A 35 NGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVI---------HDAARAGFLDTLQTLLEFQADVNIEDNEGN 104 (162)
T ss_dssp CTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHH---------HHHHHHTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred CccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHH---------HHHHHcCCHHHHHHHHHcCCCCCCcCCCCC
Confidence 4456788999998 999999999999999999999999999 7777778899999999985 55
Q ss_pred chhhHhhcCCCHHHHHHHHhccCC-CCCCCcccceeeeeeccccC
Q 006573 597 FKQHIAASKGSENCVLLLLDYEAD-PNSIGMLVTKYIIRFFGFVH 640 (640)
Q Consensus 597 ~~~h~a~~~g~~~~~~~L~~~ga~-~~~~~~~g~~~~~~~~~~~~ 640 (640)
+|+|+|+..|+.+++++|+++|++ ++.+|..|.||+..|....|
T Consensus 105 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~ 149 (162)
T 1ihb_A 105 LPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGR 149 (162)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTC
T ss_pred CHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCC
Confidence 699999999999999999999998 59999999999988776543
No 83
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.37 E-value=2.2e-13 Score=138.89 Aligned_cols=114 Identities=24% Similarity=0.131 Sum_probs=96.1
Q ss_pred cCCCCCcceeeeeecCCHHHHHHHHhcCCCCCCCCCCCCcccccccccCc----c------------------------c
Q 006573 525 GRMDLPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALVCLTHFNS----E------------------------F 576 (640)
Q Consensus 525 g~~~l~~~l~~a~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~~~~~~~----~------------------------~ 576 (640)
.+..+.+|+|+|+..|+.++++.|+++|+++|.+|..|+||||+|+..+. + |
T Consensus 127 ~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh 206 (327)
T 1sw6_A 127 VDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILH 206 (327)
T ss_dssp CSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHH
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHH
Confidence 34567799999999999999999999999999999999999998877432 1 1
Q ss_pred cccc----ccchhHHHHHHhh------------------------------------------------------cccch
Q 006573 577 FSIP----ISCNNVIKFLLFN------------------------------------------------------LFYFK 598 (640)
Q Consensus 577 ~~~~----~~~~~~~~~L~~~------------------------------------------------------~~~~~ 598 (640)
+++. .++.++++.|++. .+.+|
T Consensus 207 ~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~~~~n~~d~~G~Tp 286 (327)
T 1sw6_A 207 HIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTC 286 (327)
T ss_dssp HHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCH
T ss_pred HHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHHHhCCCCCCCCCCCH
Confidence 2222 4667888888764 36789
Q ss_pred hhHhhcCCCHHHHHHHHhccCCCCCCCcccceeeeeeccc
Q 006573 599 QHIAASKGSENCVLLLLDYEADPNSIGMLVTKYIIRFFGF 638 (640)
Q Consensus 599 ~h~a~~~g~~~~~~~L~~~ga~~~~~~~~g~~~~~~~~~~ 638 (640)
||+|+..|+.++|++|+++|||+|.+|..|+|||..|...
T Consensus 287 Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~ 326 (327)
T 1sw6_A 287 LNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGL 326 (327)
T ss_dssp HHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTCC-
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHhc
Confidence 9999999999999999999999999999999999988654
No 84
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=99.37 E-value=6.6e-13 Score=127.59 Aligned_cols=208 Identities=14% Similarity=0.207 Sum_probs=126.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhheecccC--CCCCeeehhhHhhHHHhhhheeeeeEEEEeCCceEEEeChhHHHHHHhhh-
Q 006573 65 RVWETYLVLLVIYTAWASPFEFGFLRK--PQRPLSVIDNVVNGFFAVDIILTFFVAYLDKATYLLVDCPKQIAWKYASS- 141 (640)
Q Consensus 65 ~~w~~~~~~~~~~~~~~~p~~~~f~~~--~~~~~~~i~~~~~~~f~~d~~l~f~t~~~~~~~~~~v~~~~~i~~~Yl~~- 141 (640)
..++.++.++++.+++....+. .... ....+..+|.++.++|++|+++|+... +.+ ++|+++
T Consensus 12 ~~f~~~i~~~I~ln~i~l~~~~-~~~~~~~~~~l~~~e~~~~~iF~~E~~lri~~~------------~~~--~~y~~~~ 76 (229)
T 4dxw_A 12 RIFQFTVVSIIILNAVLIGATT-YELDPLFLETIHLLDYGITIFFVIEILIRFIGE------------KQK--ADFFKSG 76 (229)
T ss_dssp HHHHHHHHHHHHHHHHSTTTCC-SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------------------CH
T ss_pred chHHHHHHHHHHHHHHHHHHcc-CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHc------------Cch--hHHhcCC
Confidence 4588899999999998877665 2111 113466799999999999999998653 221 688876
Q ss_pred hhhhHhHhhccHHHHhhhCCCCccchhhhhHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006573 142 WLVFDVISTIPSELAQKISPKPLQSYGLFNMLRLWRLRRVSALFSRLEKDRNYNYFWVRCCKLIFVTLFAVHCAGCFYYL 221 (640)
Q Consensus 142 ~f~~Dlis~lP~~~~~~~~~~~~~~~~~l~~lrllrl~r~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~~h~~ac~~~~ 221 (640)
|.++|+++++|..+-.. .....+.++++|++|++|+.|..+.++.+-++...+. -.+..+.+.++++...+|.+-+.
T Consensus 77 wni~D~~~v~~~~i~~~-~~~~~~~lr~~RilR~lrl~~~~~~l~~l~~~l~~s~--~~l~~~~~~l~~~~~ifa~~g~~ 153 (229)
T 4dxw_A 77 WNIFDTVIVAISLIPIP-NNSSFLVLRLLRIFRVLRLISVIPELKQIIEAILESV--RRVFFVSLLLFIILYIYATMGAI 153 (229)
T ss_dssp HHHHHHHHHHHTTCC---------CCTTHHHHHHTTHHHHCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhcC-ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999888776543211 1111123344555555555554444444444443332 24555555556666666665554
Q ss_pred HHHHhcCCCccccccccCCCccCcchHHHHHHHHHhhhhhhcccccCCccc----CCchhh-HHHHHHHHHHHHHHHHHH
Q 006573 222 LAARYHNPERTWIGASLGQNFLEKSLWIRYVTSMYWSITTLTTVGYGDLHP----VNTREM-VFDILFMLFNLGLTAYLI 296 (640)
Q Consensus 222 ~~~~~~~~~~~W~~~~~~~~~~~~~~~~~y~~s~yw~~~t~ttvGygd~~p----~t~~e~-~~~i~~~i~g~~~~a~~i 296 (640)
+... .+++.+++++.|+||.+.++||.||+|+.. .++... .+..++.+.+.++..+++
T Consensus 154 lf~~-----------------~~~~~F~~~~~a~~~lf~~~t~~~w~~i~~~~~~~~~~~~~~f~~~~~i~~~i~lNlfi 216 (229)
T 4dxw_A 154 LFGN-----------------DDPSRWGDLGISLITLFQVLTLSSWETVMLPMQEIYWWSWVYFFSFIIICSITILNLVI 216 (229)
T ss_dssp HTTT-----------------TSCTTTSSHHHHHHHHHHHHTTSSTHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hhcc-----------------CCcccccCHHHHHHHHHHHHccCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 4421 223467899999999999999999998621 222333 445566666678889999
Q ss_pred HHHHHHHHhhc
Q 006573 297 GNMTNLVVHGT 307 (640)
Q Consensus 297 ~~i~~~~~~~~ 307 (640)
+.+.+.+++..
T Consensus 217 avi~~~f~~~~ 227 (229)
T 4dxw_A 217 AILVDVVIQKK 227 (229)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHHHh
Confidence 99988887643
No 85
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.36 E-value=2.1e-13 Score=124.22 Aligned_cols=102 Identities=25% Similarity=0.198 Sum_probs=93.3
Q ss_pred CCcceeeeeecCCHHHHHHHHhcCCCCCCCCCCCCcccccccccCcccccccccchhHHHHHHhhc---------ccchh
Q 006573 529 LPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFNL---------FYFKQ 599 (640)
Q Consensus 529 l~~~l~~a~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~---------~~~~~ 599 (640)
..++++.|+..|+.++++.|++.|.++|.+|..|+||| +.++..++.++++.|++++ +.+|+
T Consensus 3 ~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L---------~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L 73 (167)
T 3v31_A 3 NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPL---------MWAAAHGQIAVVEFLLQNGADPQLLGKGRESAL 73 (167)
T ss_dssp TCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHH---------HHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHH
T ss_pred CcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHH---------HHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHH
Confidence 45788899999999999999999999999999999999 7777778899999999986 45699
Q ss_pred hHhhcCCCHHHHHHHHhccCCCCCCCcccceeeeeecccc
Q 006573 600 HIAASKGSENCVLLLLDYEADPNSIGMLVTKYIIRFFGFV 639 (640)
Q Consensus 600 h~a~~~g~~~~~~~L~~~ga~~~~~~~~g~~~~~~~~~~~ 639 (640)
|.|+..|+.+++++|+++|+++|.+|..|.|||+.|....
T Consensus 74 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 113 (167)
T 3v31_A 74 SLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGN 113 (167)
T ss_dssp HHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcC
Confidence 9999999999999999999999999999999999886544
No 86
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.36 E-value=1.5e-13 Score=127.56 Aligned_cols=109 Identities=10% Similarity=-0.080 Sum_probs=87.6
Q ss_pred CCcceeeeeecCCH----HHHHHHHhcCCCCCCCCCCCCcccccccccCcccccccccchhHHHHHHhhc---------c
Q 006573 529 LPLSLCFAALRGDD----LLLHQLLKRGLDPNESDNNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFNL---------F 595 (640)
Q Consensus 529 l~~~l~~a~~~g~~----~~v~~Ll~~g~~~n~~d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~---------~ 595 (640)
+.+|+|+|+..|+. ++++.|+++|+|+|.+|..|+||||+|+..+. .......+++++|+++| +
T Consensus 38 g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~---~~~~~~~~iv~~Ll~~Gadin~~d~~g 114 (186)
T 3t8k_A 38 KSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGG---NDITGTTELCKIFLEKGADITALYKPY 114 (186)
T ss_dssp TTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCT---TCHHHHHHHHHHHHHTTCCSSSCBGGG
T ss_pred CCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCC---cchhhHHHHHHHHHHCCCCCCccCCCc
Confidence 46788889999875 58999999999999999999999955544321 01112368899999986 5
Q ss_pred c-chhhHhhcCCC-----HHHHHHHHh-ccCCCCCCCcccceeeeeeccccC
Q 006573 596 Y-FKQHIAASKGS-----ENCVLLLLD-YEADPNSIGMLVTKYIIRFFGFVH 640 (640)
Q Consensus 596 ~-~~~h~a~~~g~-----~~~~~~L~~-~ga~~~~~~~~g~~~~~~~~~~~~ 640 (640)
. +|||+|+..|. .+++++|++ +|||+|.+|..|+|||..|....|
T Consensus 115 ~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~ 166 (186)
T 3t8k_A 115 KIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQK 166 (186)
T ss_dssp TBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTC
T ss_pred CchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCC
Confidence 5 79999999553 569999999 999999999999999998866543
No 87
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.36 E-value=2.9e-13 Score=123.65 Aligned_cols=101 Identities=27% Similarity=0.146 Sum_probs=92.2
Q ss_pred CcceeeeeecCCHHHHHHHHhcCCCCCCCCCCCCcccccccccCcccccccccchhHHHHHHhhc---------ccchhh
Q 006573 530 PLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFNL---------FYFKQH 600 (640)
Q Consensus 530 ~~~l~~a~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~---------~~~~~h 600 (640)
..+++.|+..|+.++++.|+++|+++|.+|..|.||| +.++..++.++++.|++++ +.+|||
T Consensus 15 ~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L---------~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 85 (169)
T 2y1l_E 15 GKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPL---------HLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLR 85 (169)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHH---------HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred cchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHH---------HHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHH
Confidence 3567889999999999999999999999999999999 7777778899999999986 456999
Q ss_pred HhhcCCCHHHHHHHHhccCCCCCCCcccceeeeeecccc
Q 006573 601 IAASKGSENCVLLLLDYEADPNSIGMLVTKYIIRFFGFV 639 (640)
Q Consensus 601 ~a~~~g~~~~~~~L~~~ga~~~~~~~~g~~~~~~~~~~~ 639 (640)
.|+..|+.+++++|+++|+++|.+|..|++||+.|....
T Consensus 86 ~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 124 (169)
T 2y1l_E 86 LAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFG 124 (169)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence 999999999999999999999999999999999887554
No 88
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.36 E-value=3e-13 Score=116.61 Aligned_cols=101 Identities=30% Similarity=0.221 Sum_probs=90.0
Q ss_pred CCcceeeeeecCCHHHHHHHHhcCCCCCCCCCCCCcccccccccCcccccccccchhHHHHHHhhc---------ccchh
Q 006573 529 LPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFNL---------FYFKQ 599 (640)
Q Consensus 529 l~~~l~~a~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~---------~~~~~ 599 (640)
+.++++.|+..|+.++++.|+++|++++..|..|.||| +.++..+..+++++|++++ +.+|+
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L---------~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l 72 (126)
T 1n0r_A 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPL---------HLAARNGHLEVVKLLLEAGADVNAKDKNGRTPL 72 (126)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHH---------HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred CccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHH---------HHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHH
Confidence 34677889999999999999999999999999999999 7777777899999999875 55689
Q ss_pred hHhhcCCCHHHHHHHHhccCCCCCCCcccceeeeeeccc
Q 006573 600 HIAASKGSENCVLLLLDYEADPNSIGMLVTKYIIRFFGF 638 (640)
Q Consensus 600 h~a~~~g~~~~~~~L~~~ga~~~~~~~~g~~~~~~~~~~ 638 (640)
|+|+..|+.+++++|+++|++++.+|..|.+|+..|...
T Consensus 73 ~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~ 111 (126)
T 1n0r_A 73 HLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN 111 (126)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred HHHHHcChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHc
Confidence 999999999999999999999999999999999877644
No 89
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.35 E-value=1.4e-13 Score=127.63 Aligned_cols=97 Identities=25% Similarity=0.193 Sum_probs=82.9
Q ss_pred cceeeeeecCCHHHHHHHHhcCCCCCCCCCCCCcccccccccCcccccccccchhHHHHHHhhc----------ccchhh
Q 006573 531 LSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFNL----------FYFKQH 600 (640)
Q Consensus 531 ~~l~~a~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~----------~~~~~h 600 (640)
++++.|+..|+.++++.|++ |+++|.+|..|+||| |+++..++.+++++|+++| +.+|||
T Consensus 46 t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L---------~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~ 115 (183)
T 3deo_A 46 TPWWTAARKADEQALSQLLE-DRDVDAVDENGRTAL---------LFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALH 115 (183)
T ss_dssp HHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHH---------HHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHH
T ss_pred CHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHH---------HHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHH
Confidence 45677888888888888888 888888888888888 6666667788888888764 456889
Q ss_pred HhhcCCCHHHHHHHHhccCCCCCCCcccceeeeeecc
Q 006573 601 IAASKGSENCVLLLLDYEADPNSIGMLVTKYIIRFFG 637 (640)
Q Consensus 601 ~a~~~g~~~~~~~L~~~ga~~~~~~~~g~~~~~~~~~ 637 (640)
+|+..|+.+++++|+++|||+|.+|..|+||+..|..
T Consensus 116 ~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~ 152 (183)
T 3deo_A 116 MAAGYVRPEVVEALVELGADIEVEDERGLTALELARE 152 (183)
T ss_dssp HHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHH
Confidence 9999999999999999999999999999999987653
No 90
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.35 E-value=7.7e-13 Score=119.75 Aligned_cols=100 Identities=26% Similarity=0.146 Sum_probs=83.9
Q ss_pred CcceeeeeecCCHHHHHHHHhcCCCCCCCCCCCCcccccccccCcccccccccchhHHHHHHhhc---------ccchhh
Q 006573 530 PLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFNL---------FYFKQH 600 (640)
Q Consensus 530 ~~~l~~a~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~---------~~~~~h 600 (640)
.++++.|+..|+.++++.|+++|+++|.+|..|+||| +.++. ++.++++.|++++ +.+|+|
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L---------~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 75 (162)
T 1ihb_A 6 GNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTAL---------QVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIH 75 (162)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHH---------HHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred hhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHH---------HHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHH
Confidence 3566778888999999999988888888888899999 66666 7888888888774 677899
Q ss_pred HhhcCCCHHHHHHHHhccCCCCCCCcccceeeeeecccc
Q 006573 601 IAASKGSENCVLLLLDYEADPNSIGMLVTKYIIRFFGFV 639 (640)
Q Consensus 601 ~a~~~g~~~~~~~L~~~ga~~~~~~~~g~~~~~~~~~~~ 639 (640)
.|+..|+.+++++|+++|+++|.+|..|+|||+.|....
T Consensus 76 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 114 (162)
T 1ihb_A 76 DAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEG 114 (162)
T ss_dssp HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence 999999999999999999999999999999988776543
No 91
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.34 E-value=2.5e-12 Score=150.56 Aligned_cols=113 Identities=18% Similarity=0.297 Sum_probs=100.9
Q ss_pred hhhHHhhhhccccccCCHHHHHHHHhcccccc-ccCCCeEEEeCCCCCeEEEEEeceEEEEEeeCCceEEEEEecCCCee
Q 006573 372 YLFYSLMDKVYLFRGVSNDLLFQLVSEMKAEY-FPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQVVGEAKTGEIC 450 (640)
Q Consensus 372 ~~~~~~l~~~~~f~~ls~~~l~~l~~~~~~~~-~~~ge~i~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~f 450 (640)
+...+.+.++|.|++++...+++++..+.... +++|++|++|||.++.+|+|.+|.|+|+..+++ .+..+++||.|
T Consensus 333 e~l~e~L~~i~~f~~Ls~~v~r~L~~~l~~~~~~kaGtvI~rQGE~gds~YIIlsG~V~V~~~~~~---~v~~L~~Gd~F 409 (999)
T 4f7z_A 333 EIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKG---VVCTLHEGDDF 409 (999)
T ss_dssp HHHHHHHTTCGGGTTSCHHHHHHHTTTCEEEEESSTTCEEECTTSBCCEEEEEEESEEEEEETTTE---EEEEEETTCEE
T ss_pred HHHHHHHHhhHHHhcCCHHHHHHHHHhhhhheeccCCCEEEeCCCcCCeEEEEEeeEEEEEEcCCc---ceEEecCCCcc
Confidence 34557788999999999999999999998654 578999999999999999999999999874332 57899999999
Q ss_pred echhhhcCCCeeeEEEEcc-ceEEEEeeHHHHHHHHHh
Q 006573 451 GEIGVLCYRPQLFTVRTKR-LSQLLRLNRTTFLNIVQA 487 (640)
Q Consensus 451 Ge~~l~~~~~~~~~~~a~~-~~~v~~i~~~~f~~ll~~ 487 (640)
||.+++++.||.+|++|.+ +|++++|++++|.+++.+
T Consensus 410 GElALL~~~PR~aTV~a~~d~c~fl~i~k~df~~il~~ 447 (999)
T 4f7z_A 410 GKLALVNDAPRAASIVLREDNCHFLRVDKEDGNRILRD 447 (999)
T ss_dssp CGGGGTCSCBCSSEEEESSSSEEEEEEEHHHHHHHHHH
T ss_pred cchhhccCCCeeEEEEEecCceEEEEeeHHHHHHHHhH
Confidence 9999999999999999998 599999999999998864
No 92
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.34 E-value=2.8e-13 Score=126.57 Aligned_cols=108 Identities=16% Similarity=0.050 Sum_probs=97.4
Q ss_pred hccCCCCCcceeeeeecCCHHHHHHHHhcCCCCCCCCCCCCcccccccccCcccccccccchhHHHHHHhhc--------
Q 006573 523 ARGRMDLPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFNL-------- 594 (640)
Q Consensus 523 ~~g~~~l~~~l~~a~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~-------- 594 (640)
...+....++++.|+..|+.++++.|+++|+++|.+|..|+||| ++++..+..++++.|++++
T Consensus 29 n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L---------~~A~~~~~~~~v~~Ll~~g~~~~~~~~ 99 (192)
T 2rfm_A 29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTAL---------IWAVKNNRLGIAEKLLSKGSNVNTKDF 99 (192)
T ss_dssp TCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHH---------HHHHHTTCHHHHHHHHHHTCCTTCCCT
T ss_pred hCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHH---------HHHHHcCCHHHHHHHHHCCCCCCCCCC
Confidence 34455677899999999999999999999999999999999999 7777778899999999885
Q ss_pred -ccchhhHhhcCCCHHHHHHHHhccCCCCCCCcccceeeeeecccc
Q 006573 595 -FYFKQHIAASKGSENCVLLLLDYEADPNSIGMLVTKYIIRFFGFV 639 (640)
Q Consensus 595 -~~~~~h~a~~~g~~~~~~~L~~~ga~~~~~~~~g~~~~~~~~~~~ 639 (640)
+.+|||+|+..|+.+++++|+++|+++|.+|..|.|||+.|....
T Consensus 100 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 145 (192)
T 2rfm_A 100 SGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYG 145 (192)
T ss_dssp TSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHT
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcC
Confidence 566999999999999999999999999999999999999886543
No 93
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=99.34 E-value=1.5e-15 Score=137.22 Aligned_cols=65 Identities=26% Similarity=0.489 Sum_probs=58.2
Q ss_pred chHHHHHHHHHhhhhhhcccccCCcccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhh
Q 006573 246 SLWIRYVTSMYWSITTLTTVGYGDLHPVNTREMVFDILFMLFNLGLTAYLIGNMTNLVVHGTSRT 310 (640)
Q Consensus 246 ~~~~~y~~s~yw~~~t~ttvGygd~~p~t~~e~~~~i~~~i~g~~~~a~~i~~i~~~~~~~~~~~ 310 (640)
+.+.+|.+|+||+++|+|||||||++|.|..+++++++.+++|+++++++++.+++.+.....+.
T Consensus 63 ~~~~~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~~~ 127 (166)
T 3pjs_K 63 AQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQEQQQ 127 (166)
T ss_dssp CCCCSTTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSSSHHHH
T ss_pred cccCCHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457889999999999999999999999999999999999999999999999998887655443
No 94
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.34 E-value=5e-13 Score=123.34 Aligned_cols=103 Identities=20% Similarity=0.221 Sum_probs=91.2
Q ss_pred CCCcceeeeeecCCHHHHHHHHhc-CCCCCCCCCCCCcccccccccCcccccccccchhHHHHHHhhc---------ccc
Q 006573 528 DLPLSLCFAALRGDDLLLHQLLKR-GLDPNESDNNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFNL---------FYF 597 (640)
Q Consensus 528 ~l~~~l~~a~~~g~~~~v~~Ll~~-g~~~n~~d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~---------~~~ 597 (640)
....+++.|+..|+.+.++.+++. +.++|.+|..|+||| +.++..++.+++++|+++| +.+
T Consensus 4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L---------~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t 74 (179)
T 3f6q_A 4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPL---------HWACREGRSAVVEMLIMRGARINVMNRGDDT 74 (179)
T ss_dssp ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHH---------HHHHHTTCHHHHHHHHHTTCCTTCCCTTCCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHH---------HHHHHcCcHHHHHHHHHcCCCCCCcCCCCCC
Confidence 445678889999999999999998 668999999999999 7777778899999999986 556
Q ss_pred hhhHhhcCCCHHHHHHHHhccCCCCCCCcccceeeeeecccc
Q 006573 598 KQHIAASKGSENCVLLLLDYEADPNSIGMLVTKYIIRFFGFV 639 (640)
Q Consensus 598 ~~h~a~~~g~~~~~~~L~~~ga~~~~~~~~g~~~~~~~~~~~ 639 (640)
|||+|+..|+.+++++|+++|+++|.+|..|.|||+.|....
T Consensus 75 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~ 116 (179)
T 3f6q_A 75 PLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWG 116 (179)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC
Confidence 999999999999999999999999999999999999887554
No 95
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=99.33 E-value=2.9e-13 Score=133.69 Aligned_cols=105 Identities=25% Similarity=0.153 Sum_probs=95.5
Q ss_pred CCCCcceeeeeecCCHHHHHHHHhcCCCCCCCCCCCCcccccccccCcccccccccchhHHHHHHhhc---------ccc
Q 006573 527 MDLPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFNL---------FYF 597 (640)
Q Consensus 527 ~~l~~~l~~a~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~---------~~~ 597 (640)
..+.+|+++|+..|+.++++.|+..|++++.++..|.||+ +.++..+..+++++|+++| +.+
T Consensus 84 ~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l---------~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~T 154 (269)
T 4b93_B 84 QDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPL---------HLACQQGHFQVVKCLLDSNAKPNKKDLSGNT 154 (269)
T ss_dssp TTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHH---------HHHHHHTCHHHHHHHHHTTCCSCCCCTTCCC
T ss_pred CCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCcc---------ccccccChHHHHHHHHHCCCCCCCCCCCCCC
Confidence 3567889999999999999999999999999999999999 7777778899999999885 567
Q ss_pred hhhHhhcCCCHHHHHHHHhccCCCCCCCcccceeeeeeccccC
Q 006573 598 KQHIAASKGSENCVLLLLDYEADPNSIGMLVTKYIIRFFGFVH 640 (640)
Q Consensus 598 ~~h~a~~~g~~~~~~~L~~~ga~~~~~~~~g~~~~~~~~~~~~ 640 (640)
|||+||..|+.+++++|+++|||+|.+|..|+|||+.|....|
T Consensus 155 pL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~ 197 (269)
T 4b93_B 155 PLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKH 197 (269)
T ss_dssp HHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCC
Confidence 9999999999999999999999999999999999998876544
No 96
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.33 E-value=4.4e-13 Score=129.06 Aligned_cols=96 Identities=23% Similarity=0.159 Sum_probs=52.6
Q ss_pred cceeeeeecCCHHHHHHHHhcCCCCCCCCCCCCcccccccccCcccccccccchhHHHHHHhhc---------ccchhhH
Q 006573 531 LSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFNL---------FYFKQHI 601 (640)
Q Consensus 531 ~~l~~a~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~---------~~~~~h~ 601 (640)
++++.|+..|+.++++.|++.|+++|.+|..|+||| ++++..+..+++++|+++| +.+|||+
T Consensus 23 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpL---------h~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~ 93 (229)
T 2vge_A 23 VLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITAL---------HNAICGANYSIVDFLITAGANVNSPDSHGWTPLHC 93 (229)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHH---------HHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHH---------HHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHH
Confidence 344555555555555555555555555555555555 4444444555555555543 3345555
Q ss_pred hhcCCCHHHHHHHHhccCCCCCCC-cccceeeeee
Q 006573 602 AASKGSENCVLLLLDYEADPNSIG-MLVTKYIIRF 635 (640)
Q Consensus 602 a~~~g~~~~~~~L~~~ga~~~~~~-~~g~~~~~~~ 635 (640)
|+..|+.+++++|+++|+|+|.+| .+|+|||+.|
T Consensus 94 A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A 128 (229)
T 2vge_A 94 AASCNDTVICMALVQHGAAIFATTLSDGATAFEKC 128 (229)
T ss_dssp HHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGC
T ss_pred HHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHH
Confidence 555555555555555555555554 3555555554
No 97
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.33 E-value=4.4e-13 Score=130.09 Aligned_cols=97 Identities=20% Similarity=0.147 Sum_probs=85.7
Q ss_pred CcceeeeeecCCHHHHHHHHhcCCCCCCCCCCCCcccccccccCcccccccccchhHHHHHHhhc---------ccchhh
Q 006573 530 PLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFNL---------FYFKQH 600 (640)
Q Consensus 530 ~~~l~~a~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~---------~~~~~h 600 (640)
.++++.|+..|+.++++.|++.|+++|.+|..|+||| |+++..++.+++++|+++| +.+|||
T Consensus 38 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L---------~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~ 108 (239)
T 1ycs_B 38 LALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITAL---------HNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLH 108 (239)
T ss_dssp HHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHH---------HHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHH
T ss_pred hHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHH---------HHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHH
Confidence 4667889999999999999999999999999999999 7777778899999999875 556899
Q ss_pred HhhcCCCHHHHHHHHhccCCCCCCCcccc-eeeeee
Q 006573 601 IAASKGSENCVLLLLDYEADPNSIGMLVT-KYIIRF 635 (640)
Q Consensus 601 ~a~~~g~~~~~~~L~~~ga~~~~~~~~g~-~~~~~~ 635 (640)
+|+..|+.+++++|+++|||+|.+|..|. ||++.|
T Consensus 109 ~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a 144 (239)
T 1ycs_B 109 CAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKC 144 (239)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHC
T ss_pred HHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHH
Confidence 99999999999999999999999998887 998877
No 98
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.33 E-value=6.2e-13 Score=128.23 Aligned_cols=105 Identities=22% Similarity=0.098 Sum_probs=93.4
Q ss_pred CCCCCcceeeeeecCCHHHHHHHHhcCCCC-----CCCCCCCCcccccccccCcccccccccchhHHHHHHhhc------
Q 006573 526 RMDLPLSLCFAALRGDDLLLHQLLKRGLDP-----NESDNNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFNL------ 594 (640)
Q Consensus 526 ~~~l~~~l~~a~~~g~~~~v~~Ll~~g~~~-----n~~d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~------ 594 (640)
+..+.+++++|+..|+.++++.|+++|+++ +.+|..|+||| +.++..++.+++++|+++|
T Consensus 34 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L---------~~A~~~~~~~~v~~Ll~~g~~~~~~ 104 (232)
T 2rfa_A 34 GAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTAL---------HIAVINQNVNLVRALLARGASVSAR 104 (232)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHH---------HHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHH---------HHHHHcCCHHHHHHHHhCCCCCCcc
Confidence 445678899999999999999999999876 77888999999 7777778899999999874
Q ss_pred ----------------ccchhhHhhcCCCHHHHHHHHhccCCCCCCCcccceeeeeecccc
Q 006573 595 ----------------FYFKQHIAASKGSENCVLLLLDYEADPNSIGMLVTKYIIRFFGFV 639 (640)
Q Consensus 595 ----------------~~~~~h~a~~~g~~~~~~~L~~~ga~~~~~~~~g~~~~~~~~~~~ 639 (640)
+.+|||+|+..|+.+++++|+++|||+|.+|.+|+|||+.|....
T Consensus 105 ~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~ 165 (232)
T 2rfa_A 105 ATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQP 165 (232)
T ss_dssp CCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTCS
T ss_pred cCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcC
Confidence 556999999999999999999999999999999999999887654
No 99
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=99.33 E-value=4.6e-13 Score=131.11 Aligned_cols=106 Identities=23% Similarity=0.137 Sum_probs=95.5
Q ss_pred CCCCCcceeeeeecCCHHHHHHHHhcCCCCCCCCCCCCcccccccccCcccccccccchhHHHHHHhhc---------cc
Q 006573 526 RMDLPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFNL---------FY 596 (640)
Q Consensus 526 ~~~l~~~l~~a~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~---------~~ 596 (640)
+....++++.|+..|+.++++.|++.|+++|.+|..|+||| ++++..++.+++++|+++| +.
T Consensus 121 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L---------~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~ 191 (253)
T 1yyh_A 121 MHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSAL---------HWAAAVNNVDAAVVLLKNGANKDMQNNREE 191 (253)
T ss_dssp CTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHH---------HHHHHHTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred CCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHH---------HHHHHcCCHHHHHHHHHcCCCCCCcCCCCC
Confidence 34567889999999999999999999999999999999999 7777778899999999986 56
Q ss_pred chhhHhhcCCCHHHHHHHHhccCCCCCCCcccceeeeeeccccC
Q 006573 597 FKQHIAASKGSENCVLLLLDYEADPNSIGMLVTKYIIRFFGFVH 640 (640)
Q Consensus 597 ~~~h~a~~~g~~~~~~~L~~~ga~~~~~~~~g~~~~~~~~~~~~ 640 (640)
+|+|+|+..|+.+++++|+++|||++.+|..|++|+..|....|
T Consensus 192 tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~ 235 (253)
T 1yyh_A 192 TPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMH 235 (253)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred CHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHHHHHHcCC
Confidence 69999999999999999999999999999999999988876655
No 100
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.32 E-value=3.8e-13 Score=130.94 Aligned_cols=96 Identities=25% Similarity=0.197 Sum_probs=83.3
Q ss_pred cceeeeeecCCHHHHHHHHhcCCCCCCCCCCCCcccccccccCcccccccccchhHHHHHHhhc----------ccchhh
Q 006573 531 LSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFNL----------FYFKQH 600 (640)
Q Consensus 531 ~~l~~a~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~----------~~~~~h 600 (640)
++++.|+..|+.++++.|++ |+++|.+|..|+||| |+++..++.+++++|+++| +.+|||
T Consensus 47 t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L---------~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~ 116 (244)
T 3ui2_A 47 TPWWTAARKADEQALSQLLE-DRDVDAVDENGRTAL---------LFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALH 116 (244)
T ss_dssp HHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHH---------HHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHH
T ss_pred CHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHH---------HHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHH
Confidence 45677888888888888888 888888888888888 6777777888888888864 456889
Q ss_pred HhhcCCCHHHHHHHHhccCCCCCCCcccceeeeeec
Q 006573 601 IAASKGSENCVLLLLDYEADPNSIGMLVTKYIIRFF 636 (640)
Q Consensus 601 ~a~~~g~~~~~~~L~~~ga~~~~~~~~g~~~~~~~~ 636 (640)
+|+..|+.+++++|+++|||+|.+|..|+||++.|.
T Consensus 117 ~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~ 152 (244)
T 3ui2_A 117 MAAGYVRPEVVEALVELGADIEVEDERGLTALELAR 152 (244)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence 999999999999999999999999999999998765
No 101
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.32 E-value=3.6e-13 Score=129.02 Aligned_cols=100 Identities=24% Similarity=0.179 Sum_probs=90.9
Q ss_pred CCcceeeeeecCCHHHHHHHHhcCCCCCCCCCCCCcccccccccCcccccccccchhHHHHHHhh-c---------ccch
Q 006573 529 LPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFN-L---------FYFK 598 (640)
Q Consensus 529 l~~~l~~a~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~-~---------~~~~ 598 (640)
..++++.|+..|+.++++.|++.|+++|.+|..|+||| ++++..++.+++++|+++ + +.+|
T Consensus 73 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L---------~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tp 143 (222)
T 3ehr_A 73 IDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTAL---------YWACHGGHKDIVEMLFTQPNIELNQQNKLGDTA 143 (222)
T ss_dssp ESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHH---------HHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCH
T ss_pred cccccccccccCcHHHHHHHHhCCCCccccCCCCCCHH---------HHHHHcCCHHHHHHHHcCCCCCccccCCCCCCH
Confidence 35677889999999999999999999999999999999 777777889999999987 4 5669
Q ss_pred hhHhhcCCCHHHHHHHHhccCCCCCCCcccceeeeeecc
Q 006573 599 QHIAASKGSENCVLLLLDYEADPNSIGMLVTKYIIRFFG 637 (640)
Q Consensus 599 ~h~a~~~g~~~~~~~L~~~ga~~~~~~~~g~~~~~~~~~ 637 (640)
||+|+..|+.+++++|+++||++|.+|..|.+|+..|..
T Consensus 144 L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~ 182 (222)
T 3ehr_A 144 LHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATN 182 (222)
T ss_dssp HHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCS
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcc
Confidence 999999999999999999999999999999999987754
No 102
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.31 E-value=1.7e-12 Score=116.80 Aligned_cols=98 Identities=12% Similarity=-0.004 Sum_probs=74.4
Q ss_pred CCCCCcceeeeeecCCHHHHHHHHhcCCCCCCCCCCCCc-ccccccccCcccccccccchhHHHHHHhhc---------c
Q 006573 526 RMDLPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRT-ALVCLTHFNSEFFSIPISCNNVIKFLLFNL---------F 595 (640)
Q Consensus 526 ~~~l~~~l~~a~~~g~~~~v~~Ll~~g~~~n~~d~~g~t-~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~---------~ 595 (640)
+....+++++|+ .|+.++++.|+++|+++|.+|..|+| || |+++..++.+++++|+++| +
T Consensus 42 ~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL---------~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g 111 (156)
T 1bi7_B 42 NSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPV---------HDAAREGFLDTLVVLHRAGARLDVRDAWG 111 (156)
T ss_dssp CSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHH---------HHHHHHTCHHHHHHHHHHTCCSSCCCTTC
T ss_pred CCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHH---------HHHHHCCCHHHHHHHHHcCCCCcccCCCC
Confidence 335567778875 99999999999999999999999999 99 7777778899999999986 5
Q ss_pred cchhhHhhcCCCHHHHHHHHhccCCCCCCCcccceeee
Q 006573 596 YFKQHIAASKGSENCVLLLLDYEADPNSIGMLVTKYII 633 (640)
Q Consensus 596 ~~~~h~a~~~g~~~~~~~L~~~ga~~~~~~~~g~~~~~ 633 (640)
.+|+|+|+..|+.+++++|+++|||++.+|..|.+|.-
T Consensus 112 ~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~ 149 (156)
T 1bi7_B 112 RLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAE 149 (156)
T ss_dssp CCHHHHHHHHTCHHHHHHHSSCC---------------
T ss_pred CCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccc
Confidence 56999999999999999999999999999999999865
No 103
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=99.31 E-value=1.4e-12 Score=129.62 Aligned_cols=103 Identities=19% Similarity=0.073 Sum_probs=83.8
Q ss_pred cCCCCCcceeeeeecCCHHHHHHHHhcCCCCCCCCCC-CCcccccccccCcccccccccchhHHHHHHhhc---------
Q 006573 525 GRMDLPLSLCFAALRGDDLLLHQLLKRGLDPNESDNN-GRTALVCLTHFNSEFFSIPISCNNVIKFLLFNL--------- 594 (640)
Q Consensus 525 g~~~l~~~l~~a~~~g~~~~v~~Ll~~g~~~n~~d~~-g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~--------- 594 (640)
.+....++++.|+..|+.++++.|+++|+++|..+.. |+||| |+++..++.+++++|+++|
T Consensus 154 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL---------~~A~~~~~~~~v~~Ll~~gad~~~~d~~ 224 (282)
T 1oy3_D 154 ENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPL---------HLAVEAQAASVLELLLKAGADPTARMYG 224 (282)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHH---------HHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred cCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHH---------HHHHHcCCHHHHHHHHHcCCCCcccccC
Confidence 3445678899999999999999999999999999864 99999 7777778899999999986
Q ss_pred ccchhhHhhcCCCHHHHHHHHhccCCCCCCCcccceeeeeec
Q 006573 595 FYFKQHIAASKGSENCVLLLLDYEADPNSIGMLVTKYIIRFF 636 (640)
Q Consensus 595 ~~~~~h~a~~~g~~~~~~~L~~~ga~~~~~~~~g~~~~~~~~ 636 (640)
+.+|||+|+..|+.+++++|+++|||+|.+|..|.||+..+-
T Consensus 225 g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~ 266 (282)
T 1oy3_D 225 GRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSG 266 (282)
T ss_dssp SCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC-----------
T ss_pred CCCHHHHHHHcCCcHHHHHHHHcCCCcCcCCCcccccccccC
Confidence 567999999999999999999999999999999999998764
No 104
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.31 E-value=1.2e-12 Score=129.83 Aligned_cols=117 Identities=14% Similarity=0.107 Sum_probs=82.5
Q ss_pred hhccCCCCCcceeeeeecCCHHHHHHHHhcCC-CCCCCCCCCCcccccccccC---------------------------
Q 006573 522 LARGRMDLPLSLCFAALRGDDLLLHQLLKRGL-DPNESDNNGRTALVCLTHFN--------------------------- 573 (640)
Q Consensus 522 l~~g~~~l~~~l~~a~~~g~~~~v~~Ll~~g~-~~n~~d~~g~t~L~~~~~~~--------------------------- 573 (640)
+...+..+.+++++|+..|+.++++.|++.|+ ++|..|..|+||||+|+...
T Consensus 104 ~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g 183 (276)
T 4hbd_A 104 VNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAG 183 (276)
T ss_dssp HTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTC
T ss_pred CcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCC
Confidence 34445667899999999999999999999998 99999999999997666310
Q ss_pred --cccccccccchhHHHHHHhhc---------ccchhhHhhcCCCHHHHHHHHh-ccCCCCCCCcccceeeeeeccc
Q 006573 574 --SEFFSIPISCNNVIKFLLFNL---------FYFKQHIAASKGSENCVLLLLD-YEADPNSIGMLVTKYIIRFFGF 638 (640)
Q Consensus 574 --~~~~~~~~~~~~~~~~L~~~~---------~~~~~h~a~~~g~~~~~~~L~~-~ga~~~~~~~~g~~~~~~~~~~ 638 (640)
--++++..+..+++++|+++| +.+|||+|+..|+.+++++|++ +|+|+|.+|.+|+|||..|...
T Consensus 184 ~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~ 260 (276)
T 4hbd_A 184 QTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDA 260 (276)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHc
Confidence 002444555666666666654 3446666666666666666666 5666666666666666655543
No 105
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.30 E-value=1.1e-12 Score=117.82 Aligned_cols=99 Identities=25% Similarity=0.105 Sum_probs=89.3
Q ss_pred cceeeeeecCCHHHHHHHHhc-CCCCCCCCCCCCcccccccccCcccccccccchhHHHHHHhhc---------ccchhh
Q 006573 531 LSLCFAALRGDDLLLHQLLKR-GLDPNESDNNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFNL---------FYFKQH 600 (640)
Q Consensus 531 ~~l~~a~~~g~~~~v~~Ll~~-g~~~n~~d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~---------~~~~~h 600 (640)
++++.|+..|+.+.++.|++. +.++|..|..|+||| ++ +..++.++++.|+++| +.+|+|
T Consensus 4 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L---------~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 73 (156)
T 1bd8_A 4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTAL---------QV-MMFGSTAIALELLKQGASPNVQDTSGTSPVH 73 (156)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHH---------HH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred hHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHH---------HH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHH
Confidence 456789999999999999988 459999999999999 77 7778899999999986 566999
Q ss_pred HhhcCCCHHHHHHHHhccCCCCCCCcccceeeeeecccc
Q 006573 601 IAASKGSENCVLLLLDYEADPNSIGMLVTKYIIRFFGFV 639 (640)
Q Consensus 601 ~a~~~g~~~~~~~L~~~ga~~~~~~~~g~~~~~~~~~~~ 639 (640)
+|+..|+.+++++|+++|+++|.+|..|+|||+.|....
T Consensus 74 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 112 (156)
T 1bd8_A 74 DAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEG 112 (156)
T ss_dssp HHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHT
T ss_pred HHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhC
Confidence 999999999999999999999999999999999887544
No 106
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.30 E-value=4.3e-13 Score=120.29 Aligned_cols=99 Identities=26% Similarity=0.170 Sum_probs=89.2
Q ss_pred cceeeeeecCCHHHHHHHHhcCCCCCCCCCCCCcccccccccCcccccccccchhHHHHHHhhc---------ccchhhH
Q 006573 531 LSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFNL---------FYFKQHI 601 (640)
Q Consensus 531 ~~l~~a~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~---------~~~~~h~ 601 (640)
.+++.|+..|+.++++.|+++|++++ .|..|.||| +.++..++.++++.|++++ +.+|+|+
T Consensus 4 ~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L---------~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~ 73 (153)
T 1awc_B 4 KKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPL---------HLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHM 73 (153)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHH---------HHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHH---------HHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence 45677999999999999999999887 588999999 7777788899999999885 5669999
Q ss_pred hhcCCCHHHHHHHHhccCCCCCCCcccceeeeeecccc
Q 006573 602 AASKGSENCVLLLLDYEADPNSIGMLVTKYIIRFFGFV 639 (640)
Q Consensus 602 a~~~g~~~~~~~L~~~ga~~~~~~~~g~~~~~~~~~~~ 639 (640)
|+..|+.+++++|+++|+++|.+|..|+|||+.|....
T Consensus 74 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 111 (153)
T 1awc_B 74 AASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHN 111 (153)
T ss_dssp HHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence 99999999999999999999999999999999887654
No 107
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=99.30 E-value=1.4e-12 Score=128.30 Aligned_cols=102 Identities=22% Similarity=0.132 Sum_probs=93.6
Q ss_pred CCCcceeeeeecCCHHHHHHHHhcCCCCCCCCCCCCcccccccccCcccccccccchhHHHHHHhhc--------ccchh
Q 006573 528 DLPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFNL--------FYFKQ 599 (640)
Q Consensus 528 ~l~~~l~~a~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~--------~~~~~ 599 (640)
...++++.|+..|+.++++.|+++|+++|.+|..|+||| +.++..++.+++++|+++| +.+||
T Consensus 100 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L---------~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L 170 (261)
T 2xai_A 100 DLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPL---------YLACENQQRACVKKLLESGADVNQGKGQDSPL 170 (261)
T ss_dssp TTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTBCHH---------HHHHHTTCHHHHHHHHHHTCCTTCCBTTBCHH
T ss_pred CCCCHHHHHHHcCcHHHHHHHHHcCCCCCcCCCCCCCHH---------HHHHHhCCHHHHHHHHHcCCCCCCCCCCCChH
Confidence 356889999999999999999999999999999999999 7777778899999999986 55799
Q ss_pred hHhhcCCCHHHHHHHHhccCCCCCCCcccceeeeeeccc
Q 006573 600 HIAASKGSENCVLLLLDYEADPNSIGMLVTKYIIRFFGF 638 (640)
Q Consensus 600 h~a~~~g~~~~~~~L~~~ga~~~~~~~~g~~~~~~~~~~ 638 (640)
|+|+..|+.+++++|+++|||+|.+|..|+||+..|...
T Consensus 171 h~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~ 209 (261)
T 2xai_A 171 HAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPE 209 (261)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSCTT
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCChhhhcccc
Confidence 999999999999999999999999999999999887654
No 108
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.30 E-value=1.7e-12 Score=122.05 Aligned_cols=111 Identities=16% Similarity=0.036 Sum_probs=67.9
Q ss_pred CCCcceeeeeecCCHHHHHHHHhcCCCCCCCCCCCCcccccccccCcc-------------------------ccccccc
Q 006573 528 DLPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALVCLTHFNSE-------------------------FFSIPIS 582 (640)
Q Consensus 528 ~l~~~l~~a~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~~~~~~~~-------------------------~~~~~~~ 582 (640)
...++++.|+..|+.++++.|+++|+++|.+|..|+||||+|+..+.. +.++..+
T Consensus 38 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~ 117 (201)
T 3hra_A 38 EGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKG 117 (201)
T ss_dssp TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTT
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcC
Confidence 345566666666666666666666666666666666666432221100 3444445
Q ss_pred chhHHHHHHhhc----------ccchhhHhhcCCC-----HHHHHHHHhccCCCCCCCcccceeeeeeccc
Q 006573 583 CNNVIKFLLFNL----------FYFKQHIAASKGS-----ENCVLLLLDYEADPNSIGMLVTKYIIRFFGF 638 (640)
Q Consensus 583 ~~~~~~~L~~~~----------~~~~~h~a~~~g~-----~~~~~~L~~~ga~~~~~~~~g~~~~~~~~~~ 638 (640)
+.++++.|++++ +.+|+|+|+..|+ .+++++|+++|||+|.+|..|+||+..|...
T Consensus 118 ~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~ 188 (201)
T 3hra_A 118 HIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQK 188 (201)
T ss_dssp CHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred CHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHc
Confidence 566666666654 3446777776666 6677777777777777777777776665443
No 109
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.30 E-value=1.6e-12 Score=124.46 Aligned_cols=106 Identities=23% Similarity=0.137 Sum_probs=95.1
Q ss_pred CCCCCcceeeeeecCCHHHHHHHHhcCCCCCCCCCCCCcccccccccCcccccccccchhHHHHHHhhc---------cc
Q 006573 526 RMDLPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFNL---------FY 596 (640)
Q Consensus 526 ~~~l~~~l~~a~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~---------~~ 596 (640)
+....++++.|+..|+.++++.|+++|+++|..|..|+||| +.++..++.+++++|+++| +.
T Consensus 89 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L---------~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~ 159 (223)
T 2f8y_A 89 MHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSAL---------HWAAAVNNVDAAVVLLKNGANKDMQNNREE 159 (223)
T ss_dssp CTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHH---------HHHHHTTCHHHHHHHHHTTCCTTCCCTTCC
T ss_pred CCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHH---------HHHHHcCCHHHHHHHHHcCCCCCCcCCCCc
Confidence 34566889999999999999999999999999999999999 7777778899999999885 56
Q ss_pred chhhHhhcCCCHHHHHHHHhccCCCCCCCcccceeeeeeccccC
Q 006573 597 FKQHIAASKGSENCVLLLLDYEADPNSIGMLVTKYIIRFFGFVH 640 (640)
Q Consensus 597 ~~~h~a~~~g~~~~~~~L~~~ga~~~~~~~~g~~~~~~~~~~~~ 640 (640)
+|+|+|+..|+.+++++|+++|||++.+|..|.+|+..|....|
T Consensus 160 t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~ 203 (223)
T 2f8y_A 160 TPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMH 203 (223)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcc
Confidence 69999999999999999999999999999999999988765543
No 110
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=99.29 E-value=1.4e-12 Score=128.28 Aligned_cols=104 Identities=22% Similarity=0.164 Sum_probs=76.9
Q ss_pred CCCCCcceeeeeecCCHHHHHHHHhcCCCCCCCCCCCCcccccccccCcccccccccchhHHHHHHhhc--------ccc
Q 006573 526 RMDLPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFNL--------FYF 597 (640)
Q Consensus 526 ~~~l~~~l~~a~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~--------~~~ 597 (640)
+..+.+++++|+..|+.++++.|+++|+++|.+|..|+||| +.++..++.++++.|+++| +.+
T Consensus 33 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L---------~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t 103 (261)
T 2xai_A 33 TADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPL---------FNACVSGSWDCVNLLLQHGASVQPESDLAS 103 (261)
T ss_dssp CTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHH---------HHHHHHTCHHHHHHHHHTTCCSSCSCTTCC
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHH---------HHHHHcCCHHHHHHHHHCCCCCCCCCCCCC
Confidence 33566788889999999999999999999999999999999 5555556667777777664 344
Q ss_pred hhhHhhcCCCHHHHHHHHhccCCCCCCCcccceeeeeeccc
Q 006573 598 KQHIAASKGSENCVLLLLDYEADPNSIGMLVTKYIIRFFGF 638 (640)
Q Consensus 598 ~~h~a~~~g~~~~~~~L~~~ga~~~~~~~~g~~~~~~~~~~ 638 (640)
|+|.|+..|+.+++++|+++|+++|.+|..|++||+.|...
T Consensus 104 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 144 (261)
T 2xai_A 104 PIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACEN 144 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHT
T ss_pred HHHHHHHcCcHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHh
Confidence 67777777777777777777777777777777776665543
No 111
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=99.29 E-value=1.9e-12 Score=125.13 Aligned_cols=105 Identities=21% Similarity=0.136 Sum_probs=94.9
Q ss_pred CCCCCcceeeeeecCCHHHHHHHHhcCCCCCCCCCCCCcccccccccCcccccccccchhHHHHHHhhc---------cc
Q 006573 526 RMDLPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFNL---------FY 596 (640)
Q Consensus 526 ~~~l~~~l~~a~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~---------~~ 596 (640)
+....++++.|+..|+.++++.|+++|++++.+|..|.||| +.++..++.+++++|+++| +.
T Consensus 108 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L---------~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~ 178 (237)
T 3b7b_A 108 DDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICL---------HWAAFSGCVDIAEILLAAKCDLHAVNIHGD 178 (237)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH---------HHHHHHCCHHHHHHHHTTTCCTTCCCTTCC
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHH---------HHHHHCCCHHHHHHHHHcCCCCCCcCCCCC
Confidence 34566889999999999999999999999999999999999 7777778899999999986 56
Q ss_pred chhhHhhcCCCHHHHHHHHhccCCCCCCCcccceeeeeecccc
Q 006573 597 FKQHIAASKGSENCVLLLLDYEADPNSIGMLVTKYIIRFFGFV 639 (640)
Q Consensus 597 ~~~h~a~~~g~~~~~~~L~~~ga~~~~~~~~g~~~~~~~~~~~ 639 (640)
+|+|+|+..|+.+++++|+++|+|++.+|..|+||+..|....
T Consensus 179 t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~ 221 (237)
T 3b7b_A 179 SPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNS 221 (237)
T ss_dssp CHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTC
T ss_pred CHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHH
Confidence 6999999999999999999999999999999999998876543
No 112
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=99.28 E-value=2.8e-12 Score=123.48 Aligned_cols=103 Identities=25% Similarity=0.184 Sum_probs=80.5
Q ss_pred CCCcceeeeeecCCHHHHHHHHhcCCCCCCCCCCCCcccccccccCcccccccccchhHHHHHHhhc---------ccch
Q 006573 528 DLPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFNL---------FYFK 598 (640)
Q Consensus 528 ~l~~~l~~a~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~---------~~~~ 598 (640)
...++++.|+..|+.++++.|+++|+++|.+|..|.||| +.++..+..+++++|++++ +.+|
T Consensus 72 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L---------~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~ 142 (231)
T 3aji_A 72 AGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPL---------HYAASKNRHEIAVMLLEGGANPDAKDHYDATA 142 (231)
T ss_dssp TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHH---------HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred CCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHH---------HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcH
Confidence 345667777777777777777777777777777777777 5666667788888888875 4568
Q ss_pred hhHhhcCCCHHHHHHHHhccCCCCCCCcccceeeeeecccc
Q 006573 599 QHIAASKGSENCVLLLLDYEADPNSIGMLVTKYIIRFFGFV 639 (640)
Q Consensus 599 ~h~a~~~g~~~~~~~L~~~ga~~~~~~~~g~~~~~~~~~~~ 639 (640)
+|.|+..|+.+++++|+++|+++|.+|..|+|||+.|....
T Consensus 143 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 183 (231)
T 3aji_A 143 MHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEE 183 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCC
Confidence 99999999999999999999999999999999988776544
No 113
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.28 E-value=6.4e-13 Score=128.53 Aligned_cols=112 Identities=20% Similarity=0.136 Sum_probs=79.7
Q ss_pred CCcceeeeeecCCHHHHHHHHhcCCCCCCCCCCCCcccccccccCc--------------------------c----ccc
Q 006573 529 LPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALVCLTHFNS--------------------------E----FFS 578 (640)
Q Consensus 529 l~~~l~~a~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~~~~~~~--------------------------~----~~~ 578 (640)
..+++++|+..|+.++++.|+++|+++|.+|..|+||||+|+..+. + +++
T Consensus 45 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A 124 (236)
T 1ikn_D 45 QQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLA 124 (236)
T ss_dssp CCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHH
Confidence 4456666666666666666666666666666666666653332110 0 455
Q ss_pred ccccchhHHHHHHhhc----------ccchhhHhhcCCCHHHHHHHHhccCCCCCCCcccceeeeeeccccC
Q 006573 579 IPISCNNVIKFLLFNL----------FYFKQHIAASKGSENCVLLLLDYEADPNSIGMLVTKYIIRFFGFVH 640 (640)
Q Consensus 579 ~~~~~~~~~~~L~~~~----------~~~~~h~a~~~g~~~~~~~L~~~ga~~~~~~~~g~~~~~~~~~~~~ 640 (640)
+..++.+++++|+++| +.+|||+|+..|+.+++++|+++|||+|.+|..|.+|+..|....|
T Consensus 125 ~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~ 196 (236)
T 1ikn_D 125 SIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPS 196 (236)
T ss_dssp HHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSC
T ss_pred HHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCc
Confidence 5567788888888774 4568999999999999999999999999999999999888876544
No 114
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.28 E-value=1.2e-12 Score=119.80 Aligned_cols=101 Identities=23% Similarity=0.187 Sum_probs=91.4
Q ss_pred CcceeeeeecCCHHHHHHHHhcCCC-CCCCCCCCCcccccccccCcccccccccchhHHHHHHhhc---------ccchh
Q 006573 530 PLSLCFAALRGDDLLLHQLLKRGLD-PNESDNNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFNL---------FYFKQ 599 (640)
Q Consensus 530 ~~~l~~a~~~g~~~~v~~Ll~~g~~-~n~~d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~---------~~~~~ 599 (640)
.++++.|+..|+.+.++.+++.+.+ +|.+|..|+||| ++++..++.+++++|+++| +.+|+
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L---------~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L 73 (172)
T 3v30_A 3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPL---------IWASAFGEIETVRFLLEWGADPHILAKERESAL 73 (172)
T ss_dssp -CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHH---------HHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHH
T ss_pred hhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHH---------HHHHHcCCHHHHHHHHHcCCCchhhcccCCCHH
Confidence 4577889999999999999999987 899999999999 7777778899999999986 45699
Q ss_pred hHhhcCCCHHHHHHHHhccCCCCCCCcccceeeeeecccc
Q 006573 600 HIAASKGSENCVLLLLDYEADPNSIGMLVTKYIIRFFGFV 639 (640)
Q Consensus 600 h~a~~~g~~~~~~~L~~~ga~~~~~~~~g~~~~~~~~~~~ 639 (640)
|+|+..|+.+++++|+++|+++|.+|..|+|||+.|....
T Consensus 74 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 113 (172)
T 3v30_A 74 SLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGN 113 (172)
T ss_dssp HHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence 9999999999999999999999999999999999887554
No 115
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.28 E-value=2.4e-12 Score=129.24 Aligned_cols=111 Identities=17% Similarity=0.094 Sum_probs=86.4
Q ss_pred CCCCcceeeeeecCCHHHHHHHHhcCCCCCCCCCCCCcccccccccC---------------------------------
Q 006573 527 MDLPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALVCLTHFN--------------------------------- 573 (640)
Q Consensus 527 ~~l~~~l~~a~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~~~~~~--------------------------------- 573 (640)
....+|+++|+..|+.++++.|+++|++++..|..|.||||+|...+
T Consensus 104 ~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 183 (299)
T 1s70_B 104 NEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQ 183 (299)
T ss_dssp TTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHH
Confidence 34567888888888888888888888888888888888887554311
Q ss_pred ------------------cccccccccchhHHHHHHhhc---------ccchhhHhhcCCCHHHHHHHHhccCCCCCCCc
Q 006573 574 ------------------SEFFSIPISCNNVIKFLLFNL---------FYFKQHIAASKGSENCVLLLLDYEADPNSIGM 626 (640)
Q Consensus 574 ------------------~~~~~~~~~~~~~~~~L~~~~---------~~~~~h~a~~~g~~~~~~~L~~~ga~~~~~~~ 626 (640)
--++++..++.+++++|+++| +.+|||+|+..|+.+++++|+++|||+|.+|.
T Consensus 184 ~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~ 263 (299)
T 1s70_B 184 WLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNK 263 (299)
T ss_dssp HHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred HHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCC
Confidence 013455567788888888875 55689999999999999999999999999999
Q ss_pred ccceeeeeecc
Q 006573 627 LVTKYIIRFFG 637 (640)
Q Consensus 627 ~g~~~~~~~~~ 637 (640)
.|+||+..|..
T Consensus 264 ~g~t~l~~A~~ 274 (299)
T 1s70_B 264 VGQTAFDVADE 274 (299)
T ss_dssp TSCCTTTSCCS
T ss_pred CCCCHHHHHHH
Confidence 99998877643
No 116
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=99.27 E-value=2.9e-12 Score=123.05 Aligned_cols=103 Identities=15% Similarity=0.039 Sum_probs=93.2
Q ss_pred CCCCCcceeeeeecCCHHHHHHHHhcCCCCCCCCCCCCcccccccccCcccccccccchhHHHHHHhhc----------c
Q 006573 526 RMDLPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFNL----------F 595 (640)
Q Consensus 526 ~~~l~~~l~~a~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~----------~ 595 (640)
+....++++.|+..|+.++++.|+++|+++|.+|..|+||| ++++..++.+++++|++++ +
T Consensus 104 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L---------~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g 174 (228)
T 2dzn_A 104 TNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPL---------HRAASVGSLKLIELLCGLGKSAVNWQDKQG 174 (228)
T ss_dssp CTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHH---------HHHHHTTCHHHHHHHHTTTCCCSCCCCTTS
T ss_pred CcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHH---------HHHHHcCCHHHHHHHHhcCcccccCcCCCC
Confidence 34567889999999999999999999999999999999999 7777778899999999886 5
Q ss_pred cchhhHhhcCCCHHHHHHHH-hccCCCCCCCcccceeeeeecc
Q 006573 596 YFKQHIAASKGSENCVLLLL-DYEADPNSIGMLVTKYIIRFFG 637 (640)
Q Consensus 596 ~~~~h~a~~~g~~~~~~~L~-~~ga~~~~~~~~g~~~~~~~~~ 637 (640)
.+|+|+|+..|+.+++++|+ ++|||++.+|..|.||+..|..
T Consensus 175 ~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~ 217 (228)
T 2dzn_A 175 WTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN 217 (228)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSS
T ss_pred CCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHH
Confidence 56999999999999999999 8999999999999999987753
No 117
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=99.27 E-value=1.1e-12 Score=128.41 Aligned_cols=101 Identities=14% Similarity=0.088 Sum_probs=70.8
Q ss_pred CcceeeeeecCCHHHHHHHHhcCC-CCCCCCCCCCcccccccccCcccccccccchhHHHHHHhhc---------ccchh
Q 006573 530 PLSLCFAALRGDDLLLHQLLKRGL-DPNESDNNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFNL---------FYFKQ 599 (640)
Q Consensus 530 ~~~l~~a~~~g~~~~v~~Ll~~g~-~~n~~d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~---------~~~~~ 599 (640)
.+++++|+..|+.++++.|+++|. +++.+|..|.||| +.++..+..++++.|+++| +.+||
T Consensus 91 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L---------~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L 161 (253)
T 1yyh_A 91 RTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPL---------ILAARLAVEGMLEDLINSHADVNAVDDLGKSAL 161 (253)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHH---------HHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHH---------HHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHH
Confidence 344455555555555555555444 4455555555555 4555566788888888875 56689
Q ss_pred hHhhcCCCHHHHHHHHhccCCCCCCCcccceeeeeecccc
Q 006573 600 HIAASKGSENCVLLLLDYEADPNSIGMLVTKYIIRFFGFV 639 (640)
Q Consensus 600 h~a~~~g~~~~~~~L~~~ga~~~~~~~~g~~~~~~~~~~~ 639 (640)
|+|+..|+.+++++|+++|||+|.+|..|.|||+.|....
T Consensus 162 ~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~ 201 (253)
T 1yyh_A 162 HWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREG 201 (253)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCC
Confidence 9999999999999999999999999999999988776543
No 118
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=99.27 E-value=1.6e-12 Score=134.65 Aligned_cols=104 Identities=13% Similarity=0.083 Sum_probs=94.7
Q ss_pred CCCcceeeeeecC--CHHHHHHHHhcCCCCCCCCCCCCcccccccccCcccccccccchhHHHHHHhhc-----------
Q 006573 528 DLPLSLCFAALRG--DDLLLHQLLKRGLDPNESDNNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFNL----------- 594 (640)
Q Consensus 528 ~l~~~l~~a~~~g--~~~~v~~Ll~~g~~~n~~d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~----------- 594 (640)
...++++.|+..| +.++++.|+++|+++|.+|..|+||| ++++..++.+++++|++++
T Consensus 137 ~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L---------~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~ 207 (364)
T 3ljn_A 137 KGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPL---------MRAMEFRNREALDLMMDTVPSKSSLRLDYA 207 (364)
T ss_dssp SCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHH---------HHHHHTTCHHHHHHHHHHCSCSSSCCTTCC
T ss_pred CCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHH---------HHHHHcCCHHHHHHHHhccccccccccccc
Confidence 4568899999999 99999999999999999999999999 7777778899999999875
Q ss_pred ---ccchhhHhhcCCCHHHHHHHHhccCCCCCCCcccceeeeeeccccC
Q 006573 595 ---FYFKQHIAASKGSENCVLLLLDYEADPNSIGMLVTKYIIRFFGFVH 640 (640)
Q Consensus 595 ---~~~~~h~a~~~g~~~~~~~L~~~ga~~~~~~~~g~~~~~~~~~~~~ 640 (640)
+.+|||+|+..|+.+++++|+++|||+|.+|..|+|||+.|....|
T Consensus 208 ~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~ 256 (364)
T 3ljn_A 208 NKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAM 256 (364)
T ss_dssp CTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCC
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCh
Confidence 4468999999999999999999999999999999999998876544
No 119
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=99.26 E-value=2.3e-12 Score=124.80 Aligned_cols=104 Identities=20% Similarity=0.143 Sum_probs=94.2
Q ss_pred CCCCCcceeeeeecCCHHHHHHHHhcCCCCCCCC-CCCCcccccccccCcccccccccchhHHHHHHhhc---------c
Q 006573 526 RMDLPLSLCFAALRGDDLLLHQLLKRGLDPNESD-NNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFNL---------F 595 (640)
Q Consensus 526 ~~~l~~~l~~a~~~g~~~~v~~Ll~~g~~~n~~d-~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~---------~ 595 (640)
+....++++.|+..|+.++++.|+++|++++..| ..|+||| +.++..++.+++++|+++| +
T Consensus 113 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L---------~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g 183 (241)
T 1k1a_A 113 NYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPL---------IHAVENNSLSMVQLLLQHGANVNAQMYSG 183 (241)
T ss_dssp CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHH---------HHHHHTTCHHHHHHHHHTTCCTTCBCTTS
T ss_pred CcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHH---------HHHHHcCCHHHHHHHHHcCCCCCCcCCCC
Confidence 3456688899999999999999999999999999 7899999 7777778899999999986 5
Q ss_pred cchhhHhhcCCCHHHHHHHHhccCCCCCCCcccceeeeeeccc
Q 006573 596 YFKQHIAASKGSENCVLLLLDYEADPNSIGMLVTKYIIRFFGF 638 (640)
Q Consensus 596 ~~~~h~a~~~g~~~~~~~L~~~ga~~~~~~~~g~~~~~~~~~~ 638 (640)
.+|+|+|+..|+.+++++|+++|||+|.+|..|+||+..|...
T Consensus 184 ~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~ 226 (241)
T 1k1a_A 184 SSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSR 226 (241)
T ss_dssp CBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSH
T ss_pred CCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhc
Confidence 6799999999999999999999999999999999999887654
No 120
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=99.25 E-value=5.1e-12 Score=125.50 Aligned_cols=116 Identities=16% Similarity=0.061 Sum_probs=94.5
Q ss_pred cCCCCCcceeeeeecCCHHHHHHHHhcCCCCCCCCCCCCcccccccccCc------------------------------
Q 006573 525 GRMDLPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALVCLTHFNS------------------------------ 574 (640)
Q Consensus 525 g~~~l~~~l~~a~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~~~~~~~------------------------------ 574 (640)
.+..+.+|+++|+..|+.++++.|+++|+++|.+|..|+||||+|+..+.
T Consensus 41 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~ 120 (282)
T 1oy3_D 41 QNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCT 120 (282)
T ss_dssp CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC------------
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccC
Confidence 34456788899999999999999999999999999999999986654210
Q ss_pred -----------------------------------------ccccccccchhHHHHHHhhc----------ccchhhHhh
Q 006573 575 -----------------------------------------EFFSIPISCNNVIKFLLFNL----------FYFKQHIAA 603 (640)
Q Consensus 575 -----------------------------------------~~~~~~~~~~~~~~~L~~~~----------~~~~~h~a~ 603 (640)
-++++..++.+++++|+++| +.+|||+|+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~ 200 (282)
T 1oy3_D 121 PDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAV 200 (282)
T ss_dssp -----------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHH
T ss_pred cchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHH
Confidence 02344557788999999874 567899999
Q ss_pred cCCCHHHHHHHHhccCCCCCCCcccceeeeeeccccC
Q 006573 604 SKGSENCVLLLLDYEADPNSIGMLVTKYIIRFFGFVH 640 (640)
Q Consensus 604 ~~g~~~~~~~L~~~ga~~~~~~~~g~~~~~~~~~~~~ 640 (640)
..|+.+++++|+++|||+|.+|..|+|||+.|....|
T Consensus 201 ~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~ 237 (282)
T 1oy3_D 201 EAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPN 237 (282)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSC
T ss_pred HcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCC
Confidence 9999999999999999999999999999988876543
No 121
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.25 E-value=2.6e-12 Score=138.62 Aligned_cols=101 Identities=18% Similarity=0.091 Sum_probs=91.2
Q ss_pred cceeeeeecCCHHHHHHHHhcCCCCCCC------CCCCCcccccccccCccccc---ccccchhHHHHHHhhc-------
Q 006573 531 LSLCFAALRGDDLLLHQLLKRGLDPNES------DNNGRTALVCLTHFNSEFFS---IPISCNNVIKFLLFNL------- 594 (640)
Q Consensus 531 ~~l~~a~~~g~~~~v~~Ll~~g~~~n~~------d~~g~t~L~~~~~~~~~~~~---~~~~~~~~~~~L~~~~------- 594 (640)
..++.|+..|+.+.++.|+++|+++|.+ |..|+||| |+| +..++.+++++|+++|
T Consensus 134 ~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~L---------h~A~~~a~~g~~~~v~~Ll~~ga~vn~~d 204 (497)
T 3lvq_E 134 QRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVL---------HLAVKVANQASLPLVDFIIQNGGHLDAKA 204 (497)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHH---------HHHHHTCCTTTHHHHHHHHHHSCCTTCCC
T ss_pred HHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHH---------HHHHHhcccccHHHHHHHHHcCCCCCccC
Confidence 4578899999999999999999999988 88999999 666 4477899999999986
Q ss_pred --ccchhhHhhcCCCHHHHHHHHhccCCCCCCCcccceeeeeeccccC
Q 006573 595 --FYFKQHIAASKGSENCVLLLLDYEADPNSIGMLVTKYIIRFFGFVH 640 (640)
Q Consensus 595 --~~~~~h~a~~~g~~~~~~~L~~~ga~~~~~~~~g~~~~~~~~~~~~ 640 (640)
+.+|||+||..|+.+++++|+++|||+|.+|.+|+|||+.|....|
T Consensus 205 ~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~ 252 (497)
T 3lvq_E 205 ADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHH 252 (497)
T ss_dssp SSSCCHHHHHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHTTC
T ss_pred CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCC
Confidence 6669999999999999999999999999999999999998876554
No 122
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=99.24 E-value=3.1e-12 Score=123.13 Aligned_cols=102 Identities=18% Similarity=0.118 Sum_probs=93.3
Q ss_pred CCCCcceeeeeecCCHHHHHHHHhcCCCCCCCCCCCCcccccccccCcccccccccchhHHHHHHhhc---------ccc
Q 006573 527 MDLPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFNL---------FYF 597 (640)
Q Consensus 527 ~~l~~~l~~a~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~---------~~~ 597 (640)
....++++.|+..|+.++++.|+++|++++.+|..|.||| +.++..++.+++++|++++ +.+
T Consensus 104 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L---------~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t 174 (231)
T 3aji_A 104 QNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAM---------HRAAAKGNLKMVHILLFYKASTNIQDTEGNT 174 (231)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH---------HHHHHHTCHHHHHHHHHTTCCSCCCCTTSCC
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHH---------HHHHHcCCHHHHHHHHhcCCCccccCCCCCC
Confidence 3456889999999999999999999999999999999999 7777778899999999885 567
Q ss_pred hhhHhhcCCCHHHHHHHHhccCCCCCCCcccceeeeeecc
Q 006573 598 KQHIAASKGSENCVLLLLDYEADPNSIGMLVTKYIIRFFG 637 (640)
Q Consensus 598 ~~h~a~~~g~~~~~~~L~~~ga~~~~~~~~g~~~~~~~~~ 637 (640)
|+|+|+..|+.+++++|+++|||++.+|..|.||+..|..
T Consensus 175 ~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~ 214 (231)
T 3aji_A 175 PLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKG 214 (231)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCH
T ss_pred HHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHh
Confidence 9999999999999999999999999999999999987653
No 123
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.24 E-value=1.5e-12 Score=127.73 Aligned_cols=105 Identities=14% Similarity=-0.042 Sum_probs=94.8
Q ss_pred CCCCcceeeeeecCCHHHHHHHHhcCCCCCCCCCC-------------CCcccccccccCcccccccccchhHHHHHHh-
Q 006573 527 MDLPLSLCFAALRGDDLLLHQLLKRGLDPNESDNN-------------GRTALVCLTHFNSEFFSIPISCNNVIKFLLF- 592 (640)
Q Consensus 527 ~~l~~~l~~a~~~g~~~~v~~Ll~~g~~~n~~d~~-------------g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~- 592 (640)
....+++++|+..|+.++++.|+++|+++|.+|.. |+||| ++++..++.+++++|++
T Consensus 88 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL---------~~A~~~~~~~~v~~Ll~~ 158 (256)
T 2etb_A 88 YQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPL---------SLAACTKQWDVVTYLLEN 158 (256)
T ss_dssp TTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHH---------HHHHHTTCHHHHHHHHHC
T ss_pred ccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHH---------HHHHHcCCHHHHHHHHhc
Confidence 35678999999999999999999999999999986 99999 77777788999999999
Q ss_pred --hc---------ccchhhHhhc--CCCHH-------HHHHHHhccCCC-------CCCCcccceeeeeeccccC
Q 006573 593 --NL---------FYFKQHIAAS--KGSEN-------CVLLLLDYEADP-------NSIGMLVTKYIIRFFGFVH 640 (640)
Q Consensus 593 --~~---------~~~~~h~a~~--~g~~~-------~~~~L~~~ga~~-------~~~~~~g~~~~~~~~~~~~ 640 (640)
+| +.+|||+|+. .|+.+ ++++|+++|||+ |.+|..|+|||+.|....|
T Consensus 159 ~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~ 233 (256)
T 2etb_A 159 PHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGK 233 (256)
T ss_dssp SSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTC
T ss_pred cccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCC
Confidence 65 6679999999 88888 999999999999 9999999999998876554
No 124
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=99.24 E-value=1.7e-11 Score=120.89 Aligned_cols=84 Identities=17% Similarity=0.175 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCccCcchHHHHHHHHHhhhhhhcccccCCcccCCchhhHHHHHH
Q 006573 205 IFVTLFAVHCAGCFYYLLAARYHNPERTWIGASLGQNFLEKSLWIRYVTSMYWSITTLTTVGYGDLHPVNTREMVFDILF 284 (640)
Q Consensus 205 ~~~~~~~~h~~ac~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~y~~s~yw~~~t~ttvGygd~~p~t~~e~~~~i~~ 284 (640)
++.+++.+.++|++|+..+. ..+++.+.+|.+|+||+++||||+||||++|.|..+++++++.
T Consensus 54 ~~~~~~~~l~fa~ly~~~~~-----------------~~~~~~~~s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~ 116 (301)
T 1xl4_A 54 TGLYLVTNALFALAYLACGD-----------------VIENARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLE 116 (301)
T ss_dssp HHHHHHHHHHHHHHHHHTCS-----------------CSTTSCTTCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcc-----------------ccCCCCcCCHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHH
Confidence 33344555778888554431 0122335689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 006573 285 MLFNLGLTAYLIGNMTNLVVH 305 (640)
Q Consensus 285 ~i~g~~~~a~~i~~i~~~~~~ 305 (640)
+++|++++|+++|.+.+.+..
T Consensus 117 ~l~G~~~~a~~~g~v~~~~~~ 137 (301)
T 1xl4_A 117 ALCGMLGLAVAASLIYARFTR 137 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999887754
No 125
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.23 E-value=3.6e-12 Score=122.84 Aligned_cols=102 Identities=22% Similarity=0.075 Sum_probs=92.0
Q ss_pred CCcceeeeeecCCHHHHHHHHhc-CCCCCCCCCCCCcccccccccCcccccccccchhHHHHHHhhc-------------
Q 006573 529 LPLSLCFAALRGDDLLLHQLLKR-GLDPNESDNNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFNL------------- 594 (640)
Q Consensus 529 l~~~l~~a~~~g~~~~v~~Ll~~-g~~~n~~d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~------------- 594 (640)
+.++++.|+..|+.++++.|++. |+++|.+|..|+||| ++++..++.++++.|++++
T Consensus 3 g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L---------~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~ 73 (232)
T 2rfa_A 3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETAL---------HIAALYDNLEAAMVLMEAAPELVFEPMTSELY 73 (232)
T ss_dssp TTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHH---------HHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTT
T ss_pred CCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHH---------HHHHHcCCHHHHHHHHHcCchhccccccccCC
Confidence 45788999999999999999998 999999999999999 7777788899999999875
Q ss_pred -ccchhhHhhcCCCHHHHHHHHhccCCCCCCCc-------------ccceeeeeecccc
Q 006573 595 -FYFKQHIAASKGSENCVLLLLDYEADPNSIGM-------------LVTKYIIRFFGFV 639 (640)
Q Consensus 595 -~~~~~h~a~~~g~~~~~~~L~~~ga~~~~~~~-------------~g~~~~~~~~~~~ 639 (640)
+.+|||+|+..|+.+++++|+++|++++.++. .|++||+.|....
T Consensus 74 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~ 132 (232)
T 2rfa_A 74 EGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVG 132 (232)
T ss_dssp TTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHT
T ss_pred CCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcC
Confidence 44689999999999999999999999999876 7999999886544
No 126
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.23 E-value=2.3e-12 Score=123.27 Aligned_cols=99 Identities=14% Similarity=0.104 Sum_probs=62.3
Q ss_pred cceeeeeecCCHHHHHHHHhcCC-CCCCCCCCCCcccccccccCcccccccccchhHHHHHHhhc---------ccchhh
Q 006573 531 LSLCFAALRGDDLLLHQLLKRGL-DPNESDNNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFNL---------FYFKQH 600 (640)
Q Consensus 531 ~~l~~a~~~g~~~~v~~Ll~~g~-~~n~~d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~---------~~~~~h 600 (640)
++++.|+..|+.++++.|++++. +++..|..|.||| +.++..+..++++.|++++ +.+|||
T Consensus 60 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L---------~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~ 130 (223)
T 2f8y_A 60 TPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPL---------ILAARLAVEGMLEDLINSHADVNAVDDLGKSALH 130 (223)
T ss_dssp CHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHH---------HHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHH
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHH---------HHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHH
Confidence 33444444444444444444433 3444444444444 4455556677778887764 455788
Q ss_pred HhhcCCCHHHHHHHHhccCCCCCCCcccceeeeeeccc
Q 006573 601 IAASKGSENCVLLLLDYEADPNSIGMLVTKYIIRFFGF 638 (640)
Q Consensus 601 ~a~~~g~~~~~~~L~~~ga~~~~~~~~g~~~~~~~~~~ 638 (640)
+|+..|+.+++++|+++|+|+|.+|..|.+||+.|...
T Consensus 131 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 168 (223)
T 2f8y_A 131 WAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAARE 168 (223)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHc
Confidence 88888888888888888888888888888888766543
No 127
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=99.23 E-value=5.4e-12 Score=125.84 Aligned_cols=101 Identities=21% Similarity=0.138 Sum_probs=93.2
Q ss_pred CCCcceeeeeecCCHHHHHHHHhcCCCCCCCCCCCCcccccccccCcccccccccchhHHHHHHhhc--------ccchh
Q 006573 528 DLPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFNL--------FYFKQ 599 (640)
Q Consensus 528 ~l~~~l~~a~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~--------~~~~~ 599 (640)
...+++++|+..|+.++++.|++.|+++|.+|..|+||| +.++..++.+++++|+++| +.+||
T Consensus 156 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L---------~~A~~~~~~~~v~~Ll~~ga~~~~~~~g~t~L 226 (285)
T 3d9h_A 156 DLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPL---------YLACENQQRACVKKLLESGADVNQGKGQDSPL 226 (285)
T ss_dssp TTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHH---------HHHHHTTCHHHHHHHHHTTCCTTCCBTTBCHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHH---------HHHHHcCcHHHHHHHHHCCCCCCCCCCCCCHH
Confidence 356889999999999999999999999999999999999 7777778899999999885 55799
Q ss_pred hHhhcCCCHHHHHHHHhccCCCCCCCcccceeeeeecc
Q 006573 600 HIAASKGSENCVLLLLDYEADPNSIGMLVTKYIIRFFG 637 (640)
Q Consensus 600 h~a~~~g~~~~~~~L~~~ga~~~~~~~~g~~~~~~~~~ 637 (640)
|+|+..|+.+++++|+++|||+|.+|..|+||+..|.+
T Consensus 227 ~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~ 264 (285)
T 3d9h_A 227 HAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPP 264 (285)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSCT
T ss_pred HHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHhcC
Confidence 99999999999999999999999999999999988764
No 128
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.23 E-value=3.3e-12 Score=126.67 Aligned_cols=100 Identities=22% Similarity=0.194 Sum_probs=87.6
Q ss_pred ceeeeeecCCHHHHHHHHhcCCC------CCCCCCCCCcccccccccCcccccccc---cchhHHHHHHhhc--------
Q 006573 532 SLCFAALRGDDLLLHQLLKRGLD------PNESDNNGRTALVCLTHFNSEFFSIPI---SCNNVIKFLLFNL-------- 594 (640)
Q Consensus 532 ~l~~a~~~g~~~~v~~Ll~~g~~------~n~~d~~g~t~L~~~~~~~~~~~~~~~---~~~~~~~~L~~~~-------- 594 (640)
+++.|+..|+.+.++.++..|++ ++..|..|+||| |.++.. ++.+++++|+++|
T Consensus 133 ~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~L---------h~A~~~~~~~~~~~v~~Ll~~ga~in~~d~ 203 (278)
T 1dcq_A 133 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETAL---------HLAVRSVDRTSLHIVDFLVQNSGNLDKQTG 203 (278)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHH---------HHHHHHCCTTTHHHHHHHHHHCSCTTCCCT
T ss_pred hhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcc---------hHHHHhcccchHHHHHHHHHCCCCccccCC
Confidence 46678899999999999999998 445588999999 555555 7899999999986
Q ss_pred -ccchhhHhhcCCCHHHHHHHHhccCCCCCCCcccceeeeeeccccC
Q 006573 595 -FYFKQHIAASKGSENCVLLLLDYEADPNSIGMLVTKYIIRFFGFVH 640 (640)
Q Consensus 595 -~~~~~h~a~~~g~~~~~~~L~~~ga~~~~~~~~g~~~~~~~~~~~~ 640 (640)
+.+|||+|+..|+.+++++|+++|||+|.+|.+|.|||+.|....|
T Consensus 204 ~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~ 250 (278)
T 1dcq_A 204 KGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKH 250 (278)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCC
Confidence 5679999999999999999999999999999999999998876544
No 129
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=99.23 E-value=6e-12 Score=120.81 Aligned_cols=105 Identities=23% Similarity=0.114 Sum_probs=89.5
Q ss_pred CCCCcceeeeeecCCHHHHHHHHhcC--CCCCCCCCCCCcccccccccCcccccccccchhHHHHHHhhc---------c
Q 006573 527 MDLPLSLCFAALRGDDLLLHQLLKRG--LDPNESDNNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFNL---------F 595 (640)
Q Consensus 527 ~~l~~~l~~a~~~g~~~~v~~Ll~~g--~~~n~~d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~---------~ 595 (640)
....++++.|+..|+.++++.|+++| ++++..|..|.||| +.++..+..+++++|+++| +
T Consensus 70 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L---------~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g 140 (228)
T 2dzn_A 70 DSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCL---------HLAVGKKWFEVSQFLIENGASVRIKDKFN 140 (228)
T ss_dssp TTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHH---------HHHHHTTCHHHHHHHHHTTCCSCCCCTTS
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHH---------HHHHHcCCHhHHHHHHHcCCCccccCCCC
Confidence 35567888899999999999999888 78888888899999 6666777889999999875 5
Q ss_pred cchhhHhhcCCCHHHHHHHHhcc-CCCCCCCcccceeeeeeccccC
Q 006573 596 YFKQHIAASKGSENCVLLLLDYE-ADPNSIGMLVTKYIIRFFGFVH 640 (640)
Q Consensus 596 ~~~~h~a~~~g~~~~~~~L~~~g-a~~~~~~~~g~~~~~~~~~~~~ 640 (640)
.+|+|+|+..|+.+++++|+++| +++|.+|..|+|||+.|....|
T Consensus 141 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~ 186 (228)
T 2dzn_A 141 QIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGH 186 (228)
T ss_dssp CCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTC
T ss_pred CCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCC
Confidence 56899999999999999999999 9999999999999988765543
No 130
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.23 E-value=6.4e-12 Score=118.07 Aligned_cols=84 Identities=24% Similarity=0.177 Sum_probs=72.7
Q ss_pred CCCCCcceeeeeecCCHHHHHHHHhcC-CCCCCCCCCCCcccccccccCcccccccccc-----hhHHHHHHhhc-----
Q 006573 526 RMDLPLSLCFAALRGDDLLLHQLLKRG-LDPNESDNNGRTALVCLTHFNSEFFSIPISC-----NNVIKFLLFNL----- 594 (640)
Q Consensus 526 ~~~l~~~l~~a~~~g~~~~v~~Ll~~g-~~~n~~d~~g~t~L~~~~~~~~~~~~~~~~~-----~~~~~~L~~~~----- 594 (640)
+....++++.|+..|+.++++.|+++| +++|.+|..|+||| +.++..+. .+++++|+++|
T Consensus 103 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L---------~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~ 173 (201)
T 3hra_A 103 NRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTAL---------IEAVGLREGNQLYQDIVKLLMENGADQSI 173 (201)
T ss_dssp CTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHH---------HHHHHSSCCSHHHHHHHHHHHHTTCCTTC
T ss_pred cCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHH---------HHHHHhccchhhHHHHHHHHHHCCCCCCc
Confidence 345668899999999999999999999 89999999999999 44444444 89999999986
Q ss_pred ----ccchhhHhhcCCCHHHHHHHHhcc
Q 006573 595 ----FYFKQHIAASKGSENCVLLLLDYE 618 (640)
Q Consensus 595 ----~~~~~h~a~~~g~~~~~~~L~~~g 618 (640)
+.+|+|+|+..|+.+++++|+++|
T Consensus 174 ~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 174 KDNSGRTAMDYANQKGYTEISKILAQYN 201 (201)
T ss_dssp CCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred cCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence 556999999999999999999987
No 131
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.23 E-value=2.4e-12 Score=128.39 Aligned_cols=97 Identities=16% Similarity=0.076 Sum_probs=50.6
Q ss_pred CCcceeeeeecCCHHHHHHHHhcCCCCCCCCCCCCcccccccccCcccccccccchhHHHHHHhhc---------ccchh
Q 006573 529 LPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFNL---------FYFKQ 599 (640)
Q Consensus 529 l~~~l~~a~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~---------~~~~~ 599 (640)
+.+++++|+..|+.++++.|+++|+++|..| |+||| ++++..++.+++++|+++| +.+||
T Consensus 31 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--g~t~L---------~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L 99 (285)
T 3kea_A 31 GHSASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPL---------HQAATLEDTKIVKILLFSGLDDSQFDDKGNTAL 99 (285)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHTTGGGSCCT--TCCHH---------HHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC--CCCHH---------HHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHH
Confidence 3445555555555555555555555555553 55555 4444444455555555543 23355
Q ss_pred hHhhcCCCHHHHHHHHhccCCCCCCCccc-ceeeeeec
Q 006573 600 HIAASKGSENCVLLLLDYEADPNSIGMLV-TKYIIRFF 636 (640)
Q Consensus 600 h~a~~~g~~~~~~~L~~~ga~~~~~~~~g-~~~~~~~~ 636 (640)
|+|+..|+.+++++|+++|+++|.+|..| ++||+.|.
T Consensus 100 ~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~ 137 (285)
T 3kea_A 100 YYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAV 137 (285)
T ss_dssp HHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHH
T ss_pred HHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHH
Confidence 55555555555555555555555555555 45555443
No 132
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.22 E-value=2.3e-12 Score=117.10 Aligned_cols=102 Identities=20% Similarity=0.099 Sum_probs=90.4
Q ss_pred CcceeeeeecCCHHHHHHHHhc-CCCCCCCCCCCCcccccccccCcccccccccchhHHHHHHhhc---------ccchh
Q 006573 530 PLSLCFAALRGDDLLLHQLLKR-GLDPNESDNNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFNL---------FYFKQ 599 (640)
Q Consensus 530 ~~~l~~a~~~g~~~~v~~Ll~~-g~~~n~~d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~---------~~~~~ 599 (640)
.++++.|+..|+.+.++.|++. +.+++..|..|.||| +.++..++.++++.|++++ +.+|+
T Consensus 9 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L---------~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L 79 (165)
T 3twr_A 9 DRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPL---------HFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPL 79 (165)
T ss_dssp HHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHH---------HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred hHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHH---------HHHHHcChHHHHHHHHhcCCCCCccCCCCCCHH
Confidence 4567789999999999999984 568889999999999 7777778899999999985 55699
Q ss_pred hHhhcCCCHHHHHHHHhccCCCCCCCcccceeeeeeccccC
Q 006573 600 HIAASKGSENCVLLLLDYEADPNSIGMLVTKYIIRFFGFVH 640 (640)
Q Consensus 600 h~a~~~g~~~~~~~L~~~ga~~~~~~~~g~~~~~~~~~~~~ 640 (640)
|+|+..|+.+++++|+++|+++|.+|..|+|||+.|....|
T Consensus 80 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 120 (165)
T 3twr_A 80 HNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGK 120 (165)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred HHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCC
Confidence 99999999999999999999999999999999998876543
No 133
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.22 E-value=6.8e-12 Score=121.29 Aligned_cols=102 Identities=18% Similarity=0.120 Sum_probs=90.6
Q ss_pred ccCCCCCcceeeeeecCCHHHHHHHHhcCCCCCCCCC-CCCcccccccccCcccccccccchhHHHHHHhhc--------
Q 006573 524 RGRMDLPLSLCFAALRGDDLLLHQLLKRGLDPNESDN-NGRTALVCLTHFNSEFFSIPISCNNVIKFLLFNL-------- 594 (640)
Q Consensus 524 ~g~~~l~~~l~~a~~~g~~~~v~~Ll~~g~~~n~~d~-~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~-------- 594 (640)
..+....+++++|+..|+.++++.|+++|+++|.+|. .|+||| ++++..++.+++++|+++|
T Consensus 112 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL---------~~A~~~~~~~~v~~Ll~~ga~~~~~~~ 182 (236)
T 1ikn_D 112 ATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTAL---------HLAVDLQNPDLVSLLLKCGADVNRVTY 182 (236)
T ss_dssp CCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHH---------HHHHHTTCHHHHHHHHTTTCCSCCCCT
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHH---------HHHHHcCCHHHHHHHHHcCCCCCcccC
Confidence 3444577899999999999999999999999999998 999999 7777778899999999986
Q ss_pred -ccchhhHhhcCCCHHHHHHHHhccCCCC--CCCcccceeeee
Q 006573 595 -FYFKQHIAASKGSENCVLLLLDYEADPN--SIGMLVTKYIIR 634 (640)
Q Consensus 595 -~~~~~h~a~~~g~~~~~~~L~~~ga~~~--~~~~~g~~~~~~ 634 (640)
+.+|+|+|+..|+.+++++|+++||++. ..+..|.+|.-.
T Consensus 183 ~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~ 225 (236)
T 1ikn_D 183 QGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDT 225 (236)
T ss_dssp TCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCCC
T ss_pred CCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccchHHHHhh
Confidence 5569999999999999999999999887 688888887643
No 134
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.22 E-value=1.5e-12 Score=127.91 Aligned_cols=104 Identities=13% Similarity=-0.008 Sum_probs=93.8
Q ss_pred CCCcceeeeeecCCHHHHHHHHhcCCCCCCCC--------------CCCCcccccccccCcccccccccchhHHHHHHh-
Q 006573 528 DLPLSLCFAALRGDDLLLHQLLKRGLDPNESD--------------NNGRTALVCLTHFNSEFFSIPISCNNVIKFLLF- 592 (640)
Q Consensus 528 ~l~~~l~~a~~~g~~~~v~~Ll~~g~~~n~~d--------------~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~- 592 (640)
...+++++|+..|+.++++.|+++|+++|.+| ..|+||| |+++..++.+++++|++
T Consensus 92 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL---------~~A~~~g~~~~v~~Ll~~ 162 (260)
T 3jxi_A 92 RGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPL---------SLAACTNQPHIVHYLTEN 162 (260)
T ss_dssp ESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHH---------HHHHHTTCHHHHHHHHHC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHH---------HHHHHcCCHHHHHHHHhc
Confidence 56788999999999999999999999999999 6899999 77778888999999999
Q ss_pred --hc---------ccchhhHhhcCCC---------HHHHHHHHhccCCC-------CCCCcccceeeeeeccccC
Q 006573 593 --NL---------FYFKQHIAASKGS---------ENCVLLLLDYEADP-------NSIGMLVTKYIIRFFGFVH 640 (640)
Q Consensus 593 --~~---------~~~~~h~a~~~g~---------~~~~~~L~~~ga~~-------~~~~~~g~~~~~~~~~~~~ 640 (640)
+| +.+|||+|+..|+ .+++++|+++||++ |.+|..|+|||+.|....|
T Consensus 163 ~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~ 237 (260)
T 3jxi_A 163 GHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGK 237 (260)
T ss_dssp SSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTC
T ss_pred cccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCC
Confidence 64 6679999998887 79999999999999 6799999999998876654
No 135
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=99.22 E-value=4.6e-12 Score=126.36 Aligned_cols=101 Identities=23% Similarity=0.183 Sum_probs=65.1
Q ss_pred CCCCcceeeeeecCCHHHHHHHHhcCCCCCCCCCCCCcccccccccCcccccccccchhHHHHHHhhc--------ccch
Q 006573 527 MDLPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFNL--------FYFK 598 (640)
Q Consensus 527 ~~l~~~l~~a~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~--------~~~~ 598 (640)
..+.+++++|+..|+.++++.|+++|+++|.+|..|+||| +.++..++.+++++|++++ +.+|
T Consensus 90 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L---------~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~ 160 (285)
T 3d9h_A 90 ADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPL---------FNACVSGSWDCVNLLLQHGASVQPESDLASP 160 (285)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHH---------HHHHHHTCHHHHHHHHHTTCCSSCSCTTSCH
T ss_pred CCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHH---------HHHHHcCHHHHHHHHHHCCCCCCCCCCCCCH
Confidence 3456777888888888888888888888888888888888 4444444555555555543 2335
Q ss_pred hhHhhcCCCHHHHHHHHhccCCCCCCCcccceeeeeec
Q 006573 599 QHIAASKGSENCVLLLLDYEADPNSIGMLVTKYIIRFF 636 (640)
Q Consensus 599 ~h~a~~~g~~~~~~~L~~~ga~~~~~~~~g~~~~~~~~ 636 (640)
+|+|+..|+.+++++|+++|+++|.+|..|+|||+.|.
T Consensus 161 L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~ 198 (285)
T 3d9h_A 161 IHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLAC 198 (285)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence 55555555555555555555555555555555555444
No 136
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.21 E-value=3e-12 Score=107.67 Aligned_cols=81 Identities=31% Similarity=0.267 Sum_probs=74.3
Q ss_pred CCCCCcceeeeeecCCHHHHHHHHhcCCCCCCCCCCCCcccccccccCcccccccccchhHHHHHHhhcccchhhHhhcC
Q 006573 526 RMDLPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFNLFYFKQHIAASK 605 (640)
Q Consensus 526 ~~~l~~~l~~a~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~h~a~~~ 605 (640)
+..+.++++.|+..|+.++++.|+++|+++|.+|..|+||| |+|+..
T Consensus 21 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpL---------------------------------h~A~~~ 67 (110)
T 2zgd_A 21 GSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPL---------------------------------HLAARN 67 (110)
T ss_dssp -CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHH---------------------------------HHHHHT
T ss_pred CCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHH---------------------------------HHHHHc
Confidence 33456778899999999999999999999999999999999 999999
Q ss_pred CCHHHHHHHHhccCCCCCCCcccceeeeeecccc
Q 006573 606 GSENCVLLLLDYEADPNSIGMLVTKYIIRFFGFV 639 (640)
Q Consensus 606 g~~~~~~~L~~~ga~~~~~~~~g~~~~~~~~~~~ 639 (640)
|+.+++++|+++|+++|.+|..|.+|+..|....
T Consensus 68 ~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~ 101 (110)
T 2zgd_A 68 GHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNG 101 (110)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred CCHHHHHHHHHcCCCccccccCCCcHHHHHHHcC
Confidence 9999999999999999999999999999887554
No 137
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.21 E-value=3.7e-12 Score=127.78 Aligned_cols=101 Identities=18% Similarity=0.123 Sum_probs=89.6
Q ss_pred cceeeeeecCCHHHHHHHHhcCCCCCC------CCCCCCcccccccccCcccccccc---cchhHHHHHHhhc-------
Q 006573 531 LSLCFAALRGDDLLLHQLLKRGLDPNE------SDNNGRTALVCLTHFNSEFFSIPI---SCNNVIKFLLFNL------- 594 (640)
Q Consensus 531 ~~l~~a~~~g~~~~v~~Ll~~g~~~n~------~d~~g~t~L~~~~~~~~~~~~~~~---~~~~~~~~L~~~~------- 594 (640)
.+++.|+..|+.+.++.++..|+++|. .|..|+||| ++++.. ++.+++++|+++|
T Consensus 153 ~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~L---------h~A~~~~~~~~~~iv~~Ll~~gadvn~~d 223 (301)
T 2b0o_E 153 QRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVL---------HLAVKVANQASLPLVDFIIQNGGHLDAKA 223 (301)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHH---------HHHHHTCCTTTHHHHHHHHHHSSCTTCCC
T ss_pred HHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHH---------HHHHHhcccCcHHHHHHHHhcCCCCCCCC
Confidence 458889999999999999999999998 699999999 555543 6789999999986
Q ss_pred --ccchhhHhhcCCCHHHHHHHHhccCCCCCCCcccceeeeeeccccC
Q 006573 595 --FYFKQHIAASKGSENCVLLLLDYEADPNSIGMLVTKYIIRFFGFVH 640 (640)
Q Consensus 595 --~~~~~h~a~~~g~~~~~~~L~~~ga~~~~~~~~g~~~~~~~~~~~~ 640 (640)
+.+|||+|+..|+.+++++|+++|||+|.+|.+|.|||..|....|
T Consensus 224 ~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~ 271 (301)
T 2b0o_E 224 ADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHH 271 (301)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTC
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCC
Confidence 5669999999999999999999999999999999999998875543
No 138
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.21 E-value=4.4e-12 Score=130.37 Aligned_cols=100 Identities=19% Similarity=0.028 Sum_probs=79.2
Q ss_pred cceeeeeec-CCHHHHHHHHhcCCCCCCCC--CCCCcccccccccCcccccccccchhHHHHHHhhc---------ccch
Q 006573 531 LSLCFAALR-GDDLLLHQLLKRGLDPNESD--NNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFNL---------FYFK 598 (640)
Q Consensus 531 ~~l~~a~~~-g~~~~v~~Ll~~g~~~n~~d--~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~---------~~~~ 598 (640)
++++.|+.. |+.++++.|+++|+++|..| ..|.||| |+++..++.+++++|+.+| +.+|
T Consensus 201 t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpL---------h~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~Tp 271 (368)
T 3jue_A 201 ALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPL---------IQATAANSLLACEFLLQNGANVNQADSAGRGP 271 (368)
T ss_dssp HHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHH---------HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred cHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHH---------HHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCH
Confidence 345667777 88888888888888888877 7788888 6666667788888888775 4557
Q ss_pred hhHhhcCCCHHHHHHHHhccCCCCCCCcccceeeeeecccc
Q 006573 599 QHIAASKGSENCVLLLLDYEADPNSIGMLVTKYIIRFFGFV 639 (640)
Q Consensus 599 ~h~a~~~g~~~~~~~L~~~ga~~~~~~~~g~~~~~~~~~~~ 639 (640)
||+|+..|+.+++++|+++|||+|.+|.+|.|||..|....
T Consensus 272 Lh~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g 312 (368)
T 3jue_A 272 LHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETA 312 (368)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCC
Confidence 88888888888888888888888888888888888776543
No 139
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.21 E-value=6.2e-12 Score=120.94 Aligned_cols=100 Identities=15% Similarity=0.078 Sum_probs=89.0
Q ss_pred CCCCCcceeeeeecCCHHHHHHHHhcCCCCCCCCCCCCcccccccccCcccccccccchhHHHHHHhhc----------c
Q 006573 526 RMDLPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFNL----------F 595 (640)
Q Consensus 526 ~~~l~~~l~~a~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~----------~ 595 (640)
+..+.+++++|+..|+.++++.|++.|+++|.+|..|+||| ++++..++.+++++|+++| +
T Consensus 51 d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL---------h~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g 121 (229)
T 2vge_A 51 NEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPL---------HCAASCNDTVICMALVQHGAAIFATTLSDG 121 (229)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHH---------HHHHHTTCHHHHHHHHTTTCCTTCCCSSTT
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHH---------HHHHHcCCHHHHHHHHHcCCCcccccCCCC
Confidence 44567899999999999999999999999999999999999 7777778899999999875 5
Q ss_pred cchhhHh--hcCCCHHHHHHHHhccCCCCCCCcccceeeee
Q 006573 596 YFKQHIA--ASKGSENCVLLLLDYEADPNSIGMLVTKYIIR 634 (640)
Q Consensus 596 ~~~~h~a--~~~g~~~~~~~L~~~ga~~~~~~~~g~~~~~~ 634 (640)
.+|+|+| +..|+.+++++|+++|||+|.+|..|.+|+..
T Consensus 122 ~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~ 162 (229)
T 2vge_A 122 ATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWD 162 (229)
T ss_dssp CCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESSC
T ss_pred CCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHHH
Confidence 5699999 99999999999999999988887777777654
No 140
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.21 E-value=2.9e-12 Score=128.60 Aligned_cols=100 Identities=24% Similarity=0.137 Sum_probs=91.9
Q ss_pred CcceeeeeecCCHHHHHHHHhcCCCCCCCCCCCCcccccccccCcccccccccchhHHHHHHhhc---------ccchhh
Q 006573 530 PLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFNL---------FYFKQH 600 (640)
Q Consensus 530 ~~~l~~a~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~---------~~~~~h 600 (640)
.++++.|+..|+.++++.|+++|+++|..|..|+||| +.++..++.+++++|+++| +.+|||
T Consensus 41 ~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L---------~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~ 111 (299)
T 1s70_B 41 GAVFLAACSSGDTEEVLRLLERGADINYANVDGLTAL---------HQACIDDNVDMVKFLVENGANINQPDNEGWIPLH 111 (299)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHH---------HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred ccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHH---------HHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHH
Confidence 4668889999999999999999999999999999999 7777778899999999986 556999
Q ss_pred HhhcCCCHHHHHHHHhccCCCCCCCcccceeeeeeccc
Q 006573 601 IAASKGSENCVLLLLDYEADPNSIGMLVTKYIIRFFGF 638 (640)
Q Consensus 601 ~a~~~g~~~~~~~L~~~ga~~~~~~~~g~~~~~~~~~~ 638 (640)
+|+..|+.+++++|+++|++++.+|..|.+|++.|...
T Consensus 112 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~ 149 (299)
T 1s70_B 112 AAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEE 149 (299)
T ss_dssp HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSH
T ss_pred HHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhc
Confidence 99999999999999999999999999999999887543
No 141
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.21 E-value=5e-12 Score=125.44 Aligned_cols=83 Identities=20% Similarity=0.167 Sum_probs=76.0
Q ss_pred CCCCcceeeeeecCCHHHHHHHHhcCCCCCCCCCCCCcccccccccCcccccccccchhHHHHHHh-hc---------cc
Q 006573 527 MDLPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALVCLTHFNSEFFSIPISCNNVIKFLLF-NL---------FY 596 (640)
Q Consensus 527 ~~l~~~l~~a~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~-~~---------~~ 596 (640)
..+.+|+++|+..|+.++++.|++.|+|+|.+|..|+||| ++++..++.+++++|++ +| +.
T Consensus 181 ~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpL---------h~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~ 251 (276)
T 4hbd_A 181 QAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTAL---------MCACEHGHKEIAGLLLAVPSCDISLTDRDGS 251 (276)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH---------HHHHHHTCHHHHHHHHTSTTCCTTCCCTTSC
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHH---------HHHHHCCCHHHHHHHHhcCCCCCcCcCCCCC
Confidence 3467999999999999999999999999999999999999 77777788999999998 54 66
Q ss_pred chhhHhhcCCCHHHHHHHHhcc
Q 006573 597 FKQHIAASKGSENCVLLLLDYE 618 (640)
Q Consensus 597 ~~~h~a~~~g~~~~~~~L~~~g 618 (640)
+|+|+|+..|+.+++++|++++
T Consensus 252 TpL~~A~~~g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 252 TALMVALDAGQSEIASMLYSRM 273 (276)
T ss_dssp CHHHHHHHHTCHHHHHHHHHHC
T ss_pred CHHHHHHHcCCHHHHHHHHhcc
Confidence 7999999999999999999985
No 142
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.21 E-value=2.3e-12 Score=127.70 Aligned_cols=105 Identities=16% Similarity=0.034 Sum_probs=94.4
Q ss_pred CCCCcceeeeeecCCHHHHHHHHhcCCCCCCCCC--------------CCCcccccccccCcccccccccchhHHHHHHh
Q 006573 527 MDLPLSLCFAALRGDDLLLHQLLKRGLDPNESDN--------------NGRTALVCLTHFNSEFFSIPISCNNVIKFLLF 592 (640)
Q Consensus 527 ~~l~~~l~~a~~~g~~~~v~~Ll~~g~~~n~~d~--------------~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~ 592 (640)
....+++++|+..|+.++++.|+++|+++|.+|. .|+||| ++++..++.+++++|++
T Consensus 99 ~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL---------~~A~~~g~~~~v~~Ll~ 169 (273)
T 2pnn_A 99 YKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPL---------SLAACTNQLAIVKFLLQ 169 (273)
T ss_dssp TTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHH---------HHHHHTTCHHHHHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHH---------HHHHHcCCHHHHHHHHh
Confidence 4567899999999999999999999999999997 799999 77778888999999999
Q ss_pred ---hc---------ccchhhHhhcCCC---------HHHHHHHHhccCCCCC-------CCcccceeeeeeccccC
Q 006573 593 ---NL---------FYFKQHIAASKGS---------ENCVLLLLDYEADPNS-------IGMLVTKYIIRFFGFVH 640 (640)
Q Consensus 593 ---~~---------~~~~~h~a~~~g~---------~~~~~~L~~~ga~~~~-------~~~~g~~~~~~~~~~~~ 640 (640)
+| +.+|||+|+..|+ .+++++|+++|||+|. +|..|+|||+.|....|
T Consensus 170 ~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~ 245 (273)
T 2pnn_A 170 NSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGK 245 (273)
T ss_dssp CSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTC
T ss_pred cccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhCh
Confidence 64 6679999999998 8999999999999974 99999999998876554
No 143
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=99.20 E-value=9.7e-12 Score=132.12 Aligned_cols=105 Identities=25% Similarity=0.222 Sum_probs=94.2
Q ss_pred CCCCCcceeeeeecCCHHHHHHHHhcCCCCCCCCCCCCcccccccccCcccccccccchhHHHHHHhhc---------cc
Q 006573 526 RMDLPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFNL---------FY 596 (640)
Q Consensus 526 ~~~l~~~l~~a~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~---------~~ 596 (640)
+....++++.|+..|+.++++.|+++|+++|.+|..|+||| +.++..++.+++++|+++| +.
T Consensus 275 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L---------~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~ 345 (437)
T 1n11_A 275 NKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPL---------HVASHYGNIKLVKFLLQHQADVNAKTKLGY 345 (437)
T ss_dssp CTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHH---------HHHHHSSCSHHHHHHHHTTCCTTCCCTTSC
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHH---------HHHHHcCcHHHHHHHHhcCCCCCCCCCCCC
Confidence 34556889999999999999999999999999999999999 7777778899999999986 56
Q ss_pred chhhHhhcCCCHHHHHHHHhccCCCCCCCcccceeeeeecccc
Q 006573 597 FKQHIAASKGSENCVLLLLDYEADPNSIGMLVTKYIIRFFGFV 639 (640)
Q Consensus 597 ~~~h~a~~~g~~~~~~~L~~~ga~~~~~~~~g~~~~~~~~~~~ 639 (640)
+|||+|+..|+.+++++|+++|||+|.+|.+|+||+..|....
T Consensus 346 t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~A~~~g 388 (437)
T 1n11_A 346 SPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLG 388 (437)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTT
T ss_pred CHHHHHHHCChHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcC
Confidence 7999999999999999999999999999999999998775543
No 144
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=99.19 E-value=1.7e-11 Score=121.93 Aligned_cols=60 Identities=25% Similarity=0.385 Sum_probs=55.9
Q ss_pred HHHHHHHHHhhhhhhcccccCCcccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006573 248 WIRYVTSMYWSITTLTTVGYGDLHPVNTREMVFDILFMLFNLGLTAYLIGNMTNLVVHGT 307 (640)
Q Consensus 248 ~~~y~~s~yw~~~t~ttvGygd~~p~t~~e~~~~i~~~i~g~~~~a~~i~~i~~~~~~~~ 307 (640)
..+|.+|+||+++|+||+||||++|.|..+++++++.+++|++++++++|.+.+.+....
T Consensus 94 ~~s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~~ 153 (333)
T 1p7b_A 94 PPGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARPR 153 (333)
T ss_dssp SSSTHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred CCcHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357889999999999999999999999999999999999999999999999998887654
No 145
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.19 E-value=1.9e-12 Score=129.18 Aligned_cols=104 Identities=17% Similarity=0.241 Sum_probs=86.5
Q ss_pred CCCCcceeeeeecCCHHHHHHHHhcCCCCCCCCCCC-CcccccccccCcccccccccchhHHHHHHhhc--------ccc
Q 006573 527 MDLPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNG-RTALVCLTHFNSEFFSIPISCNNVIKFLLFNL--------FYF 597 (640)
Q Consensus 527 ~~l~~~l~~a~~~g~~~~v~~Ll~~g~~~n~~d~~g-~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~--------~~~ 597 (640)
....+|+++|+..|+.++++.|+++|+++|.+|..| .||| +.++..++.+++++|++++ +.+
T Consensus 93 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L---------~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t 163 (285)
T 3kea_A 93 DKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSF---------YHAVMLNDVSIVSYFLSEIPSTFDLAILLS 163 (285)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHH---------HHHHHTTCHHHHHHHHTTSCTTCCCSTHHH
T ss_pred CCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHH---------HHHHHcCCHHHHHHHHhCCCccccccCCcc
Confidence 345677788888888888888888888888888888 7888 6677777899999999885 456
Q ss_pred hhhHhhcCCCHHHHHHHHhccCCCCCCCccccee-eeeecccc
Q 006573 598 KQHIAASKGSENCVLLLLDYEADPNSIGMLVTKY-IIRFFGFV 639 (640)
Q Consensus 598 ~~h~a~~~g~~~~~~~L~~~ga~~~~~~~~g~~~-~~~~~~~~ 639 (640)
|||+|+..|+.+++++|+++|||+|.+|..|.+| |+.|....
T Consensus 164 ~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~ 206 (285)
T 3kea_A 164 CIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNK 206 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHT
T ss_pred HHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcC
Confidence 8999999999999999999999999999999998 87776543
No 146
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=99.18 E-value=6e-11 Score=117.76 Aligned_cols=59 Identities=24% Similarity=0.388 Sum_probs=55.4
Q ss_pred HHHHHHHhhhhhhcccccCCcccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q 006573 250 RYVTSMYWSITTLTTVGYGDLHPVNTREMVFDILFMLFNLGLTAYLIGNMTNLVVHGTS 308 (640)
Q Consensus 250 ~y~~s~yw~~~t~ttvGygd~~p~t~~e~~~~i~~~i~g~~~~a~~i~~i~~~~~~~~~ 308 (640)
+|.+|+||+++|||||||||++|.|..+++++++.+++|++++|+++|.+.+.+....+
T Consensus 78 s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~~~~ 136 (321)
T 2qks_A 78 GFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQPKK 136 (321)
T ss_dssp THHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred chhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78999999999999999999999999999999999999999999999999988876543
No 147
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.17 E-value=3.2e-12 Score=125.22 Aligned_cols=104 Identities=20% Similarity=0.132 Sum_probs=92.2
Q ss_pred cCCCCCcceeeeeec---CCHHHHHHHHhcCCCCCCC-----------CCCCCcccccccccCcccccccccchhHHHHH
Q 006573 525 GRMDLPLSLCFAALR---GDDLLLHQLLKRGLDPNES-----------DNNGRTALVCLTHFNSEFFSIPISCNNVIKFL 590 (640)
Q Consensus 525 g~~~l~~~l~~a~~~---g~~~~v~~Ll~~g~~~n~~-----------d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L 590 (640)
.+..+.+++++|+.. |+.++++.|++.|++++.. |..|+||| ++++..++.+++++|
T Consensus 39 ~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L---------~~A~~~g~~~~v~~L 109 (256)
T 2etb_A 39 EGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSAL---------HIAIEKRSLQCVKLL 109 (256)
T ss_dssp BTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHH---------HHHHHTTCHHHHHHH
T ss_pred CCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHH---------HHHHHcCCHHHHHHH
Confidence 345667899999999 9999999999999887643 47899999 777778889999999
Q ss_pred Hhhc----------------------ccchhhHhhcCCCHHHHHHHHh---ccCCCCCCCcccceeeeeecc
Q 006573 591 LFNL----------------------FYFKQHIAASKGSENCVLLLLD---YEADPNSIGMLVTKYIIRFFG 637 (640)
Q Consensus 591 ~~~~----------------------~~~~~h~a~~~g~~~~~~~L~~---~ga~~~~~~~~g~~~~~~~~~ 637 (640)
+++| +.+|||+|+..|+.+++++|++ +|||+|.+|..|+|||+.|..
T Consensus 110 l~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~ 181 (256)
T 2etb_A 110 VENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVM 181 (256)
T ss_dssp HHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHH
T ss_pred HHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHH
Confidence 9984 6689999999999999999999 999999999999999998864
No 148
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=99.16 E-value=2.2e-11 Score=117.56 Aligned_cols=101 Identities=22% Similarity=0.218 Sum_probs=69.9
Q ss_pred CCcceeeeeecCCHHHHHHHHhcC-CCCCCCCCCCCcccccccccCcccccccccchhHHHHHHhhc---------ccch
Q 006573 529 LPLSLCFAALRGDDLLLHQLLKRG-LDPNESDNNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFNL---------FYFK 598 (640)
Q Consensus 529 l~~~l~~a~~~g~~~~v~~Ll~~g-~~~n~~d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~---------~~~~ 598 (640)
..++++.|+..|+.++++.|+++| .+++..|..|.||| +.++..++.++++.|+++| +.+|
T Consensus 77 g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L---------~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~ 147 (237)
T 3b7b_A 77 GSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPM---------IWATEYKHVDLVKLLLSKGSDINIRDNEENIC 147 (237)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHH---------HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred CCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHH---------HHHHHcCCHHHHHHHHHCCCCCCccCCCCCCH
Confidence 344555555555555555555555 45555555555665 4555556778888888765 4457
Q ss_pred hhHhhcCCCHHHHHHHHhccCCCCCCCcccceeeeeeccc
Q 006573 599 QHIAASKGSENCVLLLLDYEADPNSIGMLVTKYIIRFFGF 638 (640)
Q Consensus 599 ~h~a~~~g~~~~~~~L~~~ga~~~~~~~~g~~~~~~~~~~ 638 (640)
+|.|+..|+.+++++|+++|+|+|.+|..|.|||+.|...
T Consensus 148 L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 187 (237)
T 3b7b_A 148 LHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARE 187 (237)
T ss_dssp HHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHh
Confidence 8888888888888888888888888888888888776544
No 149
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=99.16 E-value=7.6e-12 Score=132.93 Aligned_cols=101 Identities=26% Similarity=0.231 Sum_probs=61.8
Q ss_pred CCcceeeeeecCCHHHHHHHHhcCCCCCCCCCCCCcccccccccCcccccccccchhHHHHHHhhc---------ccchh
Q 006573 529 LPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFNL---------FYFKQ 599 (640)
Q Consensus 529 l~~~l~~a~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~---------~~~~~ 599 (640)
..++++.|+..|+.++++.|+++|+++|.+|.+|+||| ++++..++.+++++|+++| +.+|+
T Consensus 47 ~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L---------~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L 117 (437)
T 1n11_A 47 VETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPL---------HCAARIGHTNMVKLLLENNANPNLATTAGHTPL 117 (437)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHH---------HHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHH---------HHHHHCCCHHHHHHHHhCCCCCCCCCCCCCcHH
Confidence 34556666666666666666666666666666666666 5555555566666666654 33456
Q ss_pred hHhhcCCCHHHHHHHHhccCCCCCCCcccceeeeeeccc
Q 006573 600 HIAASKGSENCVLLLLDYEADPNSIGMLVTKYIIRFFGF 638 (640)
Q Consensus 600 h~a~~~g~~~~~~~L~~~ga~~~~~~~~g~~~~~~~~~~ 638 (640)
|+|+..|+.++++.|+++|++++..+..|.+||+.|...
T Consensus 118 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~ 156 (437)
T 1n11_A 118 HIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKY 156 (437)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHc
Confidence 666666666666666666666666666666666655443
No 150
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=99.15 E-value=2.9e-11 Score=123.99 Aligned_cols=105 Identities=23% Similarity=0.160 Sum_probs=94.7
Q ss_pred hccCCCCCcceeeeeecCCHHHHHHHHhcCCCCCCCCCCCCcccccccccCcccccccccchhHHHHHHhhc--------
Q 006573 523 ARGRMDLPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFNL-------- 594 (640)
Q Consensus 523 ~~g~~~l~~~l~~a~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~-------- 594 (640)
...+..+.+++++|+..|+.++++.|+++|+++|.+|..|+||| ++++..++.+++++|+++|
T Consensus 52 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L---------~~A~~~g~~~iv~~Ll~~g~~~~~~~~ 122 (351)
T 3utm_A 52 HASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPL---------HNACSYGHYEVTELLLKHGACVNAMDL 122 (351)
T ss_dssp CCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHH---------HHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred ccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHH---------HHHHHCCCHHHHHHHHHCCCCCCCCCC
Confidence 33444567899999999999999999999999999999999999 7777788899999999986
Q ss_pred -ccchhhHhhcCCCHHHHHHHHhccCCCCCCCcccceeeeeec
Q 006573 595 -FYFKQHIAASKGSENCVLLLLDYEADPNSIGMLVTKYIIRFF 636 (640)
Q Consensus 595 -~~~~~h~a~~~g~~~~~~~L~~~ga~~~~~~~~g~~~~~~~~ 636 (640)
+.+|+|+|+..|+.+++++|+++|++++.+|..|.+|+..+.
T Consensus 123 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~ 165 (351)
T 3utm_A 123 WQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAP 165 (351)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCS
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHh
Confidence 556999999999999999999999999999999999987654
No 151
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=99.14 E-value=2.1e-11 Score=118.04 Aligned_cols=102 Identities=21% Similarity=0.118 Sum_probs=77.7
Q ss_pred CCcceeeeeecCCHHHHHHHHhcCC----CCCCCCCCCCcccccccccCcccccccccchhHHHHHHhhc----------
Q 006573 529 LPLSLCFAALRGDDLLLHQLLKRGL----DPNESDNNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFNL---------- 594 (640)
Q Consensus 529 l~~~l~~a~~~g~~~~v~~Ll~~g~----~~n~~d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~---------- 594 (640)
..+++++|+..|+.++++.|++.+. +++..|..|.||| +.++..++.++++.|++++
T Consensus 79 g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L---------~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~ 149 (241)
T 1k1a_A 79 GQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTAL---------HVAVNTECQETVQLLLERGADIDAVDIKS 149 (241)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHH---------HHHHHHTCHHHHHHHHHTTCCTTCCCTTT
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHH---------HHHHHcCCHHHHHHHHHcCCCcccccccC
Confidence 3455555666666666666665554 5555555666666 5566667789999999875
Q ss_pred ccchhhHhhcCCCHHHHHHHHhccCCCCCCCcccceeeeeecccc
Q 006573 595 FYFKQHIAASKGSENCVLLLLDYEADPNSIGMLVTKYIIRFFGFV 639 (640)
Q Consensus 595 ~~~~~h~a~~~g~~~~~~~L~~~ga~~~~~~~~g~~~~~~~~~~~ 639 (640)
+.+|+|+|+..|+.+++++|+++|+|+|.+|..|.|||+.|....
T Consensus 150 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 194 (241)
T 1k1a_A 150 GRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRG 194 (241)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHT
T ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence 556999999999999999999999999999999999998876544
No 152
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=99.14 E-value=2.9e-11 Score=125.50 Aligned_cols=107 Identities=18% Similarity=0.124 Sum_probs=94.4
Q ss_pred cCCCCCcceeeeeecC---CHHHHHHHHhcCCCCCC--------CCCCCCcccccccccCcccccccccchhHHHHHHhh
Q 006573 525 GRMDLPLSLCFAALRG---DDLLLHQLLKRGLDPNE--------SDNNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFN 593 (640)
Q Consensus 525 g~~~l~~~l~~a~~~g---~~~~v~~Ll~~g~~~n~--------~d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~ 593 (640)
.+....+++++|+..+ +.++++.|+++|+++|. .|..|+||| ++++..++.+++++|+++
T Consensus 231 ~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~L---------h~A~~~g~~~~v~~Ll~~ 301 (373)
T 2fo1_E 231 LDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTAL---------HYAAQVSNMPIVKYLVGE 301 (373)
T ss_dssp CCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTH---------HHHHSSCCHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHH---------HHHHHhCCHHHHHHHHHh
Confidence 3445678889999887 88999999999999886 677899999 777788889999999976
Q ss_pred c----------ccchhhHhhcCCCHHHHHHHHhccCCCCCCCcccceeeeeeccccC
Q 006573 594 L----------FYFKQHIAASKGSENCVLLLLDYEADPNSIGMLVTKYIIRFFGFVH 640 (640)
Q Consensus 594 ~----------~~~~~h~a~~~g~~~~~~~L~~~ga~~~~~~~~g~~~~~~~~~~~~ 640 (640)
+ +.+|||+|+..|+.+++++|+++|||+|.+|..|+||+..|....|
T Consensus 302 ~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~ 358 (373)
T 2fo1_E 302 KGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNH 358 (373)
T ss_dssp SCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTC
T ss_pred cCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCC
Confidence 4 5679999999999999999999999999999999999998876654
No 153
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.13 E-value=5.9e-12 Score=122.04 Aligned_cols=103 Identities=11% Similarity=-0.032 Sum_probs=63.6
Q ss_pred CCCcceeeeeecCCHHHHHHHHhcCCCCCCCCCCCCcccccccccCcccccccccchhHHHHHHhhc---------ccch
Q 006573 528 DLPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFNL---------FYFK 598 (640)
Q Consensus 528 ~l~~~l~~a~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~---------~~~~ 598 (640)
.+.++++.|+..|..+.++.|+++|+++|.. ..|.||| +.++..+..++++.|++++ +.+|
T Consensus 4 ~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L---------~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~ 73 (239)
T 1ycs_B 4 TGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALL---------LDSSLEGEFDLVQRIIYEVDDPSLPNDEGITA 73 (239)
T ss_dssp ----------------------------------CHHHH---------HHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCH
T ss_pred cccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHH---------HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCH
Confidence 3456788899999999999999999999865 5789999 7788888899999999885 5679
Q ss_pred hhHhhcCCCHHHHHHHHhccCCCCCCCcccceeeeeeccccC
Q 006573 599 QHIAASKGSENCVLLLLDYEADPNSIGMLVTKYIIRFFGFVH 640 (640)
Q Consensus 599 ~h~a~~~g~~~~~~~L~~~ga~~~~~~~~g~~~~~~~~~~~~ 640 (640)
||+||..|+.+++++|+++|+|+|.+|.+|+|||+.|....|
T Consensus 74 L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~ 115 (239)
T 1ycs_B 74 LHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNN 115 (239)
T ss_dssp HHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence 999999999999999999999999999999999998876544
No 154
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=99.13 E-value=1.5e-11 Score=127.24 Aligned_cols=41 Identities=15% Similarity=-0.109 Sum_probs=30.9
Q ss_pred cCCCCCcceeeeeecCCHHHHHHHHhcCCCCCCCCCCCCcccc
Q 006573 525 GRMDLPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALV 567 (640)
Q Consensus 525 g~~~l~~~l~~a~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~ 567 (640)
.+....+++++|+..|+.++++.|+++|++++. .+|.||||
T Consensus 49 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~g~t~L~ 89 (364)
T 3ljn_A 49 QNRFGCTALHLACKFGCVDTAKYLASVGEVHSL--WHGQKPIH 89 (364)
T ss_dssp CCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC--BTTBCHHH
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc--cCCCCHHH
Confidence 344567888888888999999988888886554 35777774
No 155
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.12 E-value=9.3e-12 Score=123.22 Aligned_cols=104 Identities=21% Similarity=0.144 Sum_probs=90.2
Q ss_pred CCCCCcceeeeeec---CCHHHHHHHHhcCCCC-------C----CCCCCCCcccccccccCcccccccccchhHHHHHH
Q 006573 526 RMDLPLSLCFAALR---GDDLLLHQLLKRGLDP-------N----ESDNNGRTALVCLTHFNSEFFSIPISCNNVIKFLL 591 (640)
Q Consensus 526 ~~~l~~~l~~a~~~---g~~~~v~~Ll~~g~~~-------n----~~d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~ 591 (640)
+....+++++|+.. |+.++++.|+++|+++ | ..|..|+||| ++++..++.+++++|+
T Consensus 51 ~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL---------~~A~~~g~~~~v~~Ll 121 (273)
T 2pnn_A 51 PETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTAL---------HIAIERRNMTLVTLLV 121 (273)
T ss_dssp TTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHH---------HHHHHTTCHHHHHHHH
T ss_pred CcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHH---------HHHHHcCCHHHHHHHH
Confidence 34567889999975 9999999999998653 2 2677899999 7777788899999999
Q ss_pred hhc-----------------------ccchhhHhhcCCCHHHHHHHHh---ccCCCCCCCcccceeeeeeccc
Q 006573 592 FNL-----------------------FYFKQHIAASKGSENCVLLLLD---YEADPNSIGMLVTKYIIRFFGF 638 (640)
Q Consensus 592 ~~~-----------------------~~~~~h~a~~~g~~~~~~~L~~---~ga~~~~~~~~g~~~~~~~~~~ 638 (640)
++| +.+|||+|+..|+.+++++|++ +|+|+|.+|..|+|||+.|...
T Consensus 122 ~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~ 194 (273)
T 2pnn_A 122 ENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEV 194 (273)
T ss_dssp HTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHH
T ss_pred HCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHc
Confidence 974 4579999999999999999999 9999999999999999988754
No 156
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=99.11 E-value=4.8e-11 Score=118.42 Aligned_cols=104 Identities=17% Similarity=0.078 Sum_probs=93.8
Q ss_pred CCCCcceeeeeecCCHHHHHHHHhcCCCCCCCCCCCCcccccccccCcccccccccchhHHHHHHhhc---------ccc
Q 006573 527 MDLPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFNL---------FYF 597 (640)
Q Consensus 527 ~~l~~~l~~a~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~---------~~~ 597 (640)
....+++++|+..|+.++++.|+++|++++.+|..|.||| +.++..++.++++.|+++| +.+
T Consensus 37 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L---------~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t 107 (285)
T 1wdy_A 37 EGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPF---------LLAAIAGSVKLLKLFLSKGADVNECDFYGFT 107 (285)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHH---------HHHHHHTCHHHHHHHHHTTCCTTCBCTTCCB
T ss_pred CCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHH---------HHHHHcCCHHHHHHHHHcCCCCCccCcccCC
Confidence 3456889999999999999999999999999999999999 7777778899999999985 566
Q ss_pred hhhHhhcCCCHHHHHHHHhccCCCCCC----------Ccccceeeeeecccc
Q 006573 598 KQHIAASKGSENCVLLLLDYEADPNSI----------GMLVTKYIIRFFGFV 639 (640)
Q Consensus 598 ~~h~a~~~g~~~~~~~L~~~ga~~~~~----------~~~g~~~~~~~~~~~ 639 (640)
|+|.|+..|+.+++++|+++|++++.+ |..|.+||+.|....
T Consensus 108 ~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~ 159 (285)
T 1wdy_A 108 AFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKG 159 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcC
Confidence 999999999999999999999999998 888999998876544
No 157
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.11 E-value=6.6e-11 Score=103.58 Aligned_cols=84 Identities=14% Similarity=0.062 Sum_probs=76.9
Q ss_pred CCCCcceeeeeecCCHHHHHHHHhcCCCCCCCCCC-CCcccccccccCcccccccccchhHHHHHHhhc---------cc
Q 006573 527 MDLPLSLCFAALRGDDLLLHQLLKRGLDPNESDNN-GRTALVCLTHFNSEFFSIPISCNNVIKFLLFNL---------FY 596 (640)
Q Consensus 527 ~~l~~~l~~a~~~g~~~~v~~Ll~~g~~~n~~d~~-g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~---------~~ 596 (640)
....+++++|+. |+.++++.|+++|+++|.+|.. |+||| ++++..++.+++++|+++| +.
T Consensus 43 ~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~L---------~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~ 112 (136)
T 1d9s_A 43 RFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPV---------HDAAREGFLDTLVVLHRAGARLDVCDAWGR 112 (136)
T ss_dssp TTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCHH---------HHHHHHTCHHHHHHHHHTCCCCCCCSSSSS
T ss_pred CCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCHH---------HHHHHcCCHHHHHHHHHcCCCCCccCCCCC
Confidence 455688889999 9999999999999999999999 99999 7777778899999999986 55
Q ss_pred chhhHhhcCCCHHHHHHHHhccCC
Q 006573 597 FKQHIAASKGSENCVLLLLDYEAD 620 (640)
Q Consensus 597 ~~~h~a~~~g~~~~~~~L~~~ga~ 620 (640)
+|+|+|+..|+.+++++|+++|||
T Consensus 113 tpl~~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 113 LPVDLAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp CHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCC
Confidence 699999999999999999999997
No 158
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=99.11 E-value=3e-10 Score=111.17 Aligned_cols=56 Identities=21% Similarity=0.399 Sum_probs=53.9
Q ss_pred HHHHHHHhhhhhhcccccCCcccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006573 250 RYVTSMYWSITTLTTVGYGDLHPVNTREMVFDILFMLFNLGLTAYLIGNMTNLVVH 305 (640)
Q Consensus 250 ~y~~s~yw~~~t~ttvGygd~~p~t~~e~~~~i~~~i~g~~~~a~~i~~i~~~~~~ 305 (640)
+|.+|+||+++|+|||||||++|.|..+|+++++.+++|+.+++++++.+++.+..
T Consensus 115 ~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~ 170 (309)
T 3um7_A 115 DLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGS 170 (309)
T ss_dssp SHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999988764
No 159
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.11 E-value=2.6e-11 Score=118.93 Aligned_cols=102 Identities=18% Similarity=0.105 Sum_probs=88.9
Q ss_pred CCCCcceeeee---ecCCHHHHHHHHhcCCC-----------CCCCCCCCCcccccccccCcccccccccchhHHHHHHh
Q 006573 527 MDLPLSLCFAA---LRGDDLLLHQLLKRGLD-----------PNESDNNGRTALVCLTHFNSEFFSIPISCNNVIKFLLF 592 (640)
Q Consensus 527 ~~l~~~l~~a~---~~g~~~~v~~Ll~~g~~-----------~n~~d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~ 592 (640)
..+.+++++|+ ..|+.++++.|++.|++ .+..|..|+||| ++++..++.+++++|++
T Consensus 44 ~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L---------~~A~~~g~~~~v~~Ll~ 114 (260)
T 3jxi_A 44 STGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTAL---------HIAIERRCKHYVELLVE 114 (260)
T ss_dssp TTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHH---------HHHHHTTCHHHHHHHHH
T ss_pred CCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHH---------HHHHHcCCHHHHHHHHh
Confidence 34678889887 78999999999998754 455666899999 77777888999999999
Q ss_pred hc-----------------------ccchhhHhhcCCCHHHHHHHHh---ccCCCCCCCcccceeeeeecc
Q 006573 593 NL-----------------------FYFKQHIAASKGSENCVLLLLD---YEADPNSIGMLVTKYIIRFFG 637 (640)
Q Consensus 593 ~~-----------------------~~~~~h~a~~~g~~~~~~~L~~---~ga~~~~~~~~g~~~~~~~~~ 637 (640)
+| +.+|||+|+..|+.+++++|++ +|+|+|.+|..|+|||+.|..
T Consensus 115 ~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~ 185 (260)
T 3jxi_A 115 KGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVA 185 (260)
T ss_dssp TTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHH
T ss_pred CCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHH
Confidence 74 4569999999999999999999 999999999999999998873
No 160
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.09 E-value=4.1e-11 Score=115.66 Aligned_cols=102 Identities=15% Similarity=0.047 Sum_probs=81.4
Q ss_pred CCCCcceeeeeecCCHHHHHHHHhcCCCCCCCC-CCCCcccccccccCcccccccccchhHHHHHHhhc---------cc
Q 006573 527 MDLPLSLCFAALRGDDLLLHQLLKRGLDPNESD-NNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFNL---------FY 596 (640)
Q Consensus 527 ~~l~~~l~~a~~~g~~~~v~~Ll~~g~~~n~~d-~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~---------~~ 596 (640)
....++++.|+..|+.++++.|+++|.+++..+ ..|.||| +.++..+..++++.|++++ +.
T Consensus 40 ~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L---------~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~ 110 (240)
T 3eu9_A 40 KENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPL---------HWATRQGHLSMVVQLMKYGADPSLIDGEGC 110 (240)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHH---------HHHHHHTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred CCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChh---------HHHHHcCCHHHHHHHHHcCCCCcccCCCCC
Confidence 345567888888888888888888888776554 3488888 6666777788888888875 44
Q ss_pred chhhHhhcCCCHHHHHHHHhccCCCCCCCcccceeeeeecc
Q 006573 597 FKQHIAASKGSENCVLLLLDYEADPNSIGMLVTKYIIRFFG 637 (640)
Q Consensus 597 ~~~h~a~~~g~~~~~~~L~~~ga~~~~~~~~g~~~~~~~~~ 637 (640)
+|+|.|+..|+.+++++|+++|++++.+|..|.+|++.|..
T Consensus 111 t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~ 151 (240)
T 3eu9_A 111 SCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAY 151 (240)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred CHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHH
Confidence 58999999999999999999999999999999999887763
No 161
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.09 E-value=2.2e-11 Score=112.82 Aligned_cols=96 Identities=14% Similarity=0.075 Sum_probs=79.9
Q ss_pred cceeeeeecCCHHHHHHHHhcCCCCCCCC-CCCCcccccccccCcccccccccc----hhHHHHHHhhc---------cc
Q 006573 531 LSLCFAALRGDDLLLHQLLKRGLDPNESD-NNGRTALVCLTHFNSEFFSIPISC----NNVIKFLLFNL---------FY 596 (640)
Q Consensus 531 ~~l~~a~~~g~~~~v~~Ll~~g~~~n~~d-~~g~t~L~~~~~~~~~~~~~~~~~----~~~~~~L~~~~---------~~ 596 (640)
.+++.|+..|+.+.++.++..+ +|..| ..|+||| |+++..++ .+++++|+++| +.
T Consensus 8 ~~l~~Aa~~g~~~~~~~l~~~~--~~~~~~~~g~T~L---------h~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~ 76 (186)
T 3t8k_A 8 RTVSAAAMLGTYEDFLELFEKG--YEDKESVLKSNIL---------YDVLRNNNDEARYKISMFLINKGADIKSRTKEGT 76 (186)
T ss_dssp SSHHHHHHHSCHHHHHHHHHHS--SSCHHHHHTTTHH---------HHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCC
T ss_pred cHHHHHHHcCCHHHHHHHHhcC--cccccccCCCCHH---------HHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCC
Confidence 4567799999999999998776 45555 7799999 55554443 46899999986 56
Q ss_pred chhhHhhcCCC------HHHHHHHHhccCCCCCCCcccc-eeeeeecc
Q 006573 597 FKQHIAASKGS------ENCVLLLLDYEADPNSIGMLVT-KYIIRFFG 637 (640)
Q Consensus 597 ~~~h~a~~~g~------~~~~~~L~~~ga~~~~~~~~g~-~~~~~~~~ 637 (640)
+|||+|+..|+ .+++++|+++|||+|.+|..|+ +||+.|..
T Consensus 77 TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~ 124 (186)
T 3t8k_A 77 TLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFN 124 (186)
T ss_dssp CTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGG
T ss_pred cHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHH
Confidence 69999999987 5889999999999999999999 99998865
No 162
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=99.09 E-value=3.5e-11 Score=119.38 Aligned_cols=100 Identities=24% Similarity=0.186 Sum_probs=90.7
Q ss_pred cceeeeeecCCHHHHHHHHhcCCCCCCC-CCCCCcccccccccCcccccccccchhHHHHHHhhc---------ccchhh
Q 006573 531 LSLCFAALRGDDLLLHQLLKRGLDPNES-DNNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFNL---------FYFKQH 600 (640)
Q Consensus 531 ~~l~~a~~~g~~~~v~~Ll~~g~~~n~~-d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~---------~~~~~h 600 (640)
++++.|+..|+.++++.|+++|+++|.. |..|+||| +.++..+..++++.|+++| +.+|+|
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L---------~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 77 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPL---------HNAVQMSREDIVELLLRHGADPVLRKKNGATPFL 77 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHH---------HHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHH---------HHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHH
Confidence 4567799999999999999999999988 78899999 7777788899999999986 456999
Q ss_pred HhhcCCCHHHHHHHHhccCCCCCCCcccceeeeeecccc
Q 006573 601 IAASKGSENCVLLLLDYEADPNSIGMLVTKYIIRFFGFV 639 (640)
Q Consensus 601 ~a~~~g~~~~~~~L~~~ga~~~~~~~~g~~~~~~~~~~~ 639 (640)
+|+..|+.+++++|+++|+++|.+|..|.+||+.|....
T Consensus 78 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 116 (285)
T 1wdy_A 78 LAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYG 116 (285)
T ss_dssp HHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhC
Confidence 999999999999999999999999999999999886544
No 163
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=99.08 E-value=4.1e-11 Score=122.86 Aligned_cols=100 Identities=23% Similarity=0.173 Sum_probs=90.0
Q ss_pred CCCCcceeeeeec---CCHHHHHHHHhcCCCCCCCCCCCCcccccccccCcccccccccchhHHHHHHhhc---------
Q 006573 527 MDLPLSLCFAALR---GDDLLLHQLLKRGLDPNESDNNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFNL--------- 594 (640)
Q Consensus 527 ~~l~~~l~~a~~~---g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~--------- 594 (640)
....++++.|+.. +..++++.|+++|+++|.+|..|+||| +.++..++.+++++|+++|
T Consensus 209 ~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L---------~~A~~~g~~~~v~~Ll~~ga~~n~~d~~ 279 (351)
T 3utm_A 209 QSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPL---------HVAAERAHNDVMEVLHKHGAKMNALDSL 279 (351)
T ss_dssp TTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHH---------HHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred CCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHH---------HHHHHcCCHHHHHHHHHCCCCCCCcCCC
Confidence 3456788889888 557999999999999999999999999 7777788899999999986
Q ss_pred ccchhhHhhcCCCHHHHHHHHhccCCCCCCCcccceeeeee
Q 006573 595 FYFKQHIAASKGSENCVLLLLDYEADPNSIGMLVTKYIIRF 635 (640)
Q Consensus 595 ~~~~~h~a~~~g~~~~~~~L~~~ga~~~~~~~~g~~~~~~~ 635 (640)
+.+|||+|+..|+.+++++|+++|||++.+|..|.||+..|
T Consensus 280 g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~g~tal~~a 320 (351)
T 3utm_A 280 GQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMG 320 (351)
T ss_dssp SCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHS
T ss_pred CCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCChhhhh
Confidence 56699999999999999999999999999999999998765
No 164
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.07 E-value=5e-11 Score=119.57 Aligned_cols=100 Identities=20% Similarity=0.175 Sum_probs=83.8
Q ss_pred CCCCCcceeeeeec---CCHHHHHHHHhcCCCCCCCCCCCCcccccccccCcccccccccchhHHHHHHhhc--------
Q 006573 526 RMDLPLSLCFAALR---GDDLLLHQLLKRGLDPNESDNNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFNL-------- 594 (640)
Q Consensus 526 ~~~l~~~l~~a~~~---g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~-------- 594 (640)
+....+++++|+.. |+.++++.|+++|+++|.+|.+|+||| |+|+..+..+++++|+++|
T Consensus 187 ~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpL---------h~A~~~g~~~~v~~Ll~~gad~~~~d~ 257 (301)
T 2b0o_E 187 QAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTAL---------HYAALYNQPDCLKLLLKGRALVGTVNE 257 (301)
T ss_dssp CSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHH---------HHHHHTTCHHHHHHHHHTTCCCSCCCT
T ss_pred CCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHH---------HHHHHcCCHHHHHHHHHcCCCCCCcCC
Confidence 34556888999986 899999999999999999999999999 7777778899999999986
Q ss_pred -ccchhhHhhcCCCHHHHHHHHhccCCCCCCCcccceeeeeeccccC
Q 006573 595 -FYFKQHIAASKGSENCVLLLLDYEADPNSIGMLVTKYIIRFFGFVH 640 (640)
Q Consensus 595 -~~~~~h~a~~~g~~~~~~~L~~~ga~~~~~~~~g~~~~~~~~~~~~ 640 (640)
+.+|||+|+..|+.+++++|+++|++ .|.|||+.|....|
T Consensus 258 ~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~~~g~ 298 (301)
T 2b0o_E 258 AGETALDIARKKHHKECEELLEQAQAG------TFAFPLHVDYSWVI 298 (301)
T ss_dssp TSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCCC-------
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChhHHHHhcCC
Confidence 55699999999999999999999997 58999999987765
No 165
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.06 E-value=5.5e-11 Score=114.75 Aligned_cols=104 Identities=19% Similarity=0.115 Sum_probs=89.2
Q ss_pred CCCCcceeeeeecCCHHHHHHHHhcCCCCCCCCCCCCcccccccccCcccccccccc-hhHHHHHHhhc----------c
Q 006573 527 MDLPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALVCLTHFNSEFFSIPISC-NNVIKFLLFNL----------F 595 (640)
Q Consensus 527 ~~l~~~l~~a~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~~~~~~~~~~~~~~~~-~~~~~~L~~~~----------~ 595 (640)
....++++.|+..|+.++++.|+++|++++.+|..|.||||+|+. .++ .+++++|++.+ +
T Consensus 107 ~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~---------~~~~~~~~~~L~~~~~~~~~~~~~~g 177 (240)
T 3eu9_A 107 GEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAY---------RTHSVDPTRLLLTFNVSVNLGDKYHK 177 (240)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH---------HCCSSTTHHHHHHTTCCTTCCCTTTC
T ss_pred CCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHH---------hCChHHHHHHHHhcCCCcchhhccCC
Confidence 345678899999999999999999999999999999999944443 333 67888888864 5
Q ss_pred cchhhHhhcCCCHHHHHHHHhccCCCCCCCcccceeeeeecccc
Q 006573 596 YFKQHIAASKGSENCVLLLLDYEADPNSIGMLVTKYIIRFFGFV 639 (640)
Q Consensus 596 ~~~~h~a~~~g~~~~~~~L~~~ga~~~~~~~~g~~~~~~~~~~~ 639 (640)
.+|||.|+..|+.+++++|+++|+|++.+|..|.+|+..|....
T Consensus 178 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~ 221 (240)
T 3eu9_A 178 NTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRK 221 (240)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTT
T ss_pred CcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence 57999999999999999999999999999999999998876554
No 166
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=99.05 E-value=9.8e-11 Score=119.67 Aligned_cols=90 Identities=19% Similarity=0.183 Sum_probs=77.9
Q ss_pred CCCcceeeeeecCCHHHHHHHHhc-CCCCCCCCCCCCcccccccccCcccccccccchhHHHHHHhhcccc----hhhHh
Q 006573 528 DLPLSLCFAALRGDDLLLHQLLKR-GLDPNESDNNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFNLFYF----KQHIA 602 (640)
Q Consensus 528 ~l~~~l~~a~~~g~~~~v~~Ll~~-g~~~n~~d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~----~~h~a 602 (640)
.+.+++|.|+..|+.+.++.|+.. |+++|.+|.+|+||| ++|+..++.++|++|+++|+.. |||.|
T Consensus 238 ~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL---------~~A~~~g~~~iv~~Ll~~GAd~n~~~~L~~A 308 (337)
T 4g8k_A 238 RGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTAL---------LLAVELKLKKIAELLCKRGASTDCGDLVMTA 308 (337)
T ss_dssp GGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHH---------HHHHHTTCHHHHHHHHTTSCSSTTCCHHHHH
T ss_pred CCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHH---------HHHHHcCCHHHHHHHHHCCCCCCCCCHHHHH
Confidence 456889999999999999999975 899999999999999 7777778899999999998554 89999
Q ss_pred hcCCCHHHHHHHHhccCCCCCCCc
Q 006573 603 ASKGSENCVLLLLDYEADPNSIGM 626 (640)
Q Consensus 603 ~~~g~~~~~~~L~~~ga~~~~~~~ 626 (640)
+..|+.++|++|+++|||+|...+
T Consensus 309 ~~~~~~~iv~~Ll~~GA~~d~~~p 332 (337)
T 4g8k_A 309 RRNYDHSLVKVLLSHGAKEDFHPP 332 (337)
T ss_dssp HHTTCHHHHHHHHHTTCCC-----
T ss_pred HHcCCHHHHHHHHHCcCCCCCCCC
Confidence 999999999999999999997543
No 167
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=99.03 E-value=1.4e-09 Score=107.90 Aligned_cols=99 Identities=18% Similarity=0.290 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC----CccccccccCCCccCcchHHHHHHHHHhhhhhhcccccCCcccC--Cch
Q 006573 203 KLIFVTLFAVHCAGCFYYLLAARYHNP----ERTWIGASLGQNFLEKSLWIRYVTSMYWSITTLTTVGYGDLHPV--NTR 276 (640)
Q Consensus 203 ~l~~~~~~~~h~~ac~~~~~~~~~~~~----~~~W~~~~~~~~~~~~~~~~~y~~s~yw~~~t~ttvGygd~~p~--t~~ 276 (640)
.+++.+++...+||++||.++....+- +.+|.. ......++.+||||+++|+||+||||+.|. ++.
T Consensus 48 if~~~y~~swl~Fa~ly~~ia~~~Gdl~~~~~~~~~~--------Cv~~~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~ 119 (340)
T 3sya_A 48 IFVMVYTVTWLFFGMIWWLIAYIRGDMDHIEDPSWTP--------CVTNLNGFVSAFLFSIETETTIGYGYRVITDKCPE 119 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTTCSSCSSCCC--------SBSCCCSTTHHHHHHHHHHSCCCCSSSCBCTTCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccccccccc--------hhccccCHHHHHhhhheeeeeecCCCccCcCcCHH
Confidence 334445556678899999887422221 122221 112246789999999999999999999997 688
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Q 006573 277 EMVFDILFMLFNLGLTAYLIGNMTNLVVHGTSR 309 (640)
Q Consensus 277 e~~~~i~~~i~g~~~~a~~i~~i~~~~~~~~~~ 309 (640)
+++++++.+++|+++.|+++|.+.+-+.+..++
T Consensus 120 g~~l~~~~~l~G~~l~a~~~giv~ak~srp~~r 152 (340)
T 3sya_A 120 GIILLLIQSVLGSIVNAFMVGCMFVKISQPKKR 152 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhc
Confidence 999999999999999999999999888765443
No 168
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.01 E-value=3.1e-10 Score=122.33 Aligned_cols=97 Identities=22% Similarity=0.198 Sum_probs=77.9
Q ss_pred CCCCCcceeee---eecCCHHHHHHHHhcCCCCCCCCCCCCcccccccccCcccccccccchhHHHHHHhhc--------
Q 006573 526 RMDLPLSLCFA---ALRGDDLLLHQLLKRGLDPNESDNNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFNL-------- 594 (640)
Q Consensus 526 ~~~l~~~l~~a---~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~-------- 594 (640)
+..+.+++|+| +..|+.++++.|+++|+|+|.+|..|+||| |+|+..++.+++++|+++|
T Consensus 168 ~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~TpL---------h~A~~~g~~~~v~~Ll~~ga~~~~~d~ 238 (497)
T 3lvq_E 168 QAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTAL---------HYAALYNQPDCLKLLLKGRALVGTVNE 238 (497)
T ss_dssp CCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCHH---------HHHTTTTCHHHHHHHHHTCCCCSCCCT
T ss_pred ccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcHH---------HHHHHcCCHHHHHHHHHcCCCCCCcCC
Confidence 44567889999 559999999999999999999999999999 7788888999999999987
Q ss_pred -ccchhhHhhcCCCHHHHHHHHhccCCCCCCCccccee
Q 006573 595 -FYFKQHIAASKGSENCVLLLLDYEADPNSIGMLVTKY 631 (640)
Q Consensus 595 -~~~~~h~a~~~g~~~~~~~L~~~ga~~~~~~~~g~~~ 631 (640)
+.+|||+|+..|+.+++++|+++|||++..+..+.++
T Consensus 239 ~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~h~~~~ 276 (497)
T 3lvq_E 239 AGETALDIARKKHHKECEELLEQAQAGTFAFPLHVDYS 276 (497)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHTCC------------
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhCCCCCCCcceeecc
Confidence 5569999999999999999999999999976655443
No 169
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.01 E-value=3.5e-10 Score=111.99 Aligned_cols=93 Identities=20% Similarity=0.164 Sum_probs=82.6
Q ss_pred hhccCCCCCcceeeeeec---CCHHHHHHHHhcCCCCCCCCCCCCcccccccccCcccccccccchhHHHHHHhhc----
Q 006573 522 LARGRMDLPLSLCFAALR---GDDLLLHQLLKRGLDPNESDNNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFNL---- 594 (640)
Q Consensus 522 l~~g~~~l~~~l~~a~~~---g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~---- 594 (640)
+..++..+.+++|+|+.. |+.++++.|+++|+++|.+|..|+||| |+|+..++.+++++|+++|
T Consensus 162 l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpL---------h~A~~~g~~~~v~~Ll~~gad~~ 232 (278)
T 1dcq_A 162 LANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTAL---------HYCCLTDNAECLKLLLRGKASIE 232 (278)
T ss_dssp CSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHH---------HHHHHTTCHHHHHHHHHTTCCTT
T ss_pred ccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHH---------HHHHHcCCHHHHHHHHHcCCCCC
Confidence 334455678999999999 899999999999999999999999999 7777788899999999986
Q ss_pred -----ccchhhHhhcCCCHHHHHHHHhccCCCCC
Q 006573 595 -----FYFKQHIAASKGSENCVLLLLDYEADPNS 623 (640)
Q Consensus 595 -----~~~~~h~a~~~g~~~~~~~L~~~ga~~~~ 623 (640)
+.+|||+|+..|+.+++++|+++||+...
T Consensus 233 ~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~ 266 (278)
T 1dcq_A 233 IANESGETPLDIAKRLKHEHCEELLTQALSGRFN 266 (278)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTCCC
T ss_pred CccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence 55699999999999999999999997543
No 170
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=99.01 E-value=1.1e-10 Score=121.19 Aligned_cols=106 Identities=18% Similarity=0.103 Sum_probs=94.3
Q ss_pred CCCCCcceeeeeecCCHHHHHHHHhcCCCCCCCCCCCCcccccccccCcccccccccchhHHHHHHhhc-----------
Q 006573 526 RMDLPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFNL----------- 594 (640)
Q Consensus 526 ~~~l~~~l~~a~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~----------- 594 (640)
+..+.+++++|+..|+.++++.|+++|+++|.+|..|+||| +.++..++.+++++|++++
T Consensus 163 d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L---------~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~ 233 (373)
T 2fo1_E 163 DCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSAL---------HQAAANRDFGMMVYMLNSTKLKGDIEELDR 233 (373)
T ss_dssp CTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHH---------HHHHHTTCHHHHHHHTTSHHHHHTTSCCCT
T ss_pred CCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHH---------HHHHHCCCHHHHHHHHhcCccccChhhcCC
Confidence 34567899999999999999999999999999999999999 7777778899999999764
Q ss_pred -ccchhhHhhcCC---CHHHHHHHHhccCCCCC--------CCcccceeeeeeccccC
Q 006573 595 -FYFKQHIAASKG---SENCVLLLLDYEADPNS--------IGMLVTKYIIRFFGFVH 640 (640)
Q Consensus 595 -~~~~~h~a~~~g---~~~~~~~L~~~ga~~~~--------~~~~g~~~~~~~~~~~~ 640 (640)
+.+|||+|+..| +.+++++|+++|+++|. +|..|++||+.|....|
T Consensus 234 ~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~ 291 (373)
T 2fo1_E 234 NGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSN 291 (373)
T ss_dssp TSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCC
T ss_pred CCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCC
Confidence 667999999998 89999999999999997 67899999998876543
No 171
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.00 E-value=4.5e-10 Score=98.18 Aligned_cols=84 Identities=24% Similarity=0.188 Sum_probs=75.8
Q ss_pred CCCCCcceeeeeecCCHHHHHHHHhcCCCCCCCCCCCCcccccccccCcccccccccchhHHHHHHhhc---------cc
Q 006573 526 RMDLPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFNL---------FY 596 (640)
Q Consensus 526 ~~~l~~~l~~a~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~---------~~ 596 (640)
+....++++.|+..|+.++++.|+++|+++|.+|..|.||| +.++..++.+++++|+++| +.
T Consensus 44 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L---------~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~ 114 (136)
T 2jab_A 44 DEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPL---------HLAAFIGHLEIAEVLLKHGADVNAQDKFGK 114 (136)
T ss_dssp CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHH---------HHHHHHTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHH---------HHHHHcCCHHHHHHHHHcCCCCcCcCCCCC
Confidence 44567889999999999999999999999999999999999 7777778899999999986 55
Q ss_pred chhhHhhcCCCHHHHHHHHhcc
Q 006573 597 FKQHIAASKGSENCVLLLLDYE 618 (640)
Q Consensus 597 ~~~h~a~~~g~~~~~~~L~~~g 618 (640)
+|+|+|+..|+.+++++|+++|
T Consensus 115 tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 115 TAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp CHHHHHHHTTCHHHHHHHHHC-
T ss_pred CHHHHHHHCCCHHHHHHHHHcC
Confidence 6999999999999999999987
No 172
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.00 E-value=4.9e-10 Score=96.10 Aligned_cols=85 Identities=33% Similarity=0.314 Sum_probs=77.5
Q ss_pred CCCCcceeeeeecCCHHHHHHHHhcCCCCCCCCCCCCcccccccccCcccccccccchhHHHHHHhhc---------ccc
Q 006573 527 MDLPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFNL---------FYF 597 (640)
Q Consensus 527 ~~l~~~l~~a~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~---------~~~ 597 (640)
....++++.|+..|+.++++.|+++|++++.+|..|.||| +.++..++.+++++|+++| +.+
T Consensus 33 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l---------~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t 103 (126)
T 1n0r_A 33 KNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPL---------HLAARNGHLEVVKLLLEAGADVNAKDKNGRT 103 (126)
T ss_dssp TTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHH---------HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred CCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHH---------HHHHHcChHHHHHHHHHcCCCCcccCCCCCC
Confidence 3456788999999999999999999999999999999999 7777778899999999975 556
Q ss_pred hhhHhhcCCCHHHHHHHHhccCC
Q 006573 598 KQHIAASKGSENCVLLLLDYEAD 620 (640)
Q Consensus 598 ~~h~a~~~g~~~~~~~L~~~ga~ 620 (640)
|+|+|+..|+.+++++|+++|||
T Consensus 104 ~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 104 PLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHTCC
T ss_pred HHHHHHHcCcHHHHHHHHHcCCC
Confidence 99999999999999999999997
No 173
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=98.97 E-value=2e-10 Score=100.59 Aligned_cols=79 Identities=25% Similarity=0.220 Sum_probs=68.4
Q ss_pred CCCCCCCCCCCCcccccccccCcccccccccchhHHHHHHhhc---------ccchhhHhhcCCCHHHHHHHHhccCCCC
Q 006573 552 GLDPNESDNNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFNL---------FYFKQHIAASKGSENCVLLLLDYEADPN 622 (640)
Q Consensus 552 g~~~n~~d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~---------~~~~~h~a~~~g~~~~~~~L~~~ga~~~ 622 (640)
|+|+ .+|..|+||| +.++..+..++++.|++++ +.+|||+|+..|+.+++++|+++|+++|
T Consensus 1 G~d~-~~~~~g~t~L---------~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~ 70 (137)
T 3c5r_A 1 GIDP-FTNHRGETLL---------HIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVN 70 (137)
T ss_dssp ---C-CCCTTCCCHH---------HHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred CCCC-CcCCCCCCHH---------HHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccc
Confidence 6788 7889999999 7777788899999999885 5669999999999999999999999999
Q ss_pred CCCcccceeeeeeccccC
Q 006573 623 SIGMLVTKYIIRFFGFVH 640 (640)
Q Consensus 623 ~~~~~g~~~~~~~~~~~~ 640 (640)
.+|..|+|||+.|....|
T Consensus 71 ~~~~~g~t~L~~A~~~~~ 88 (137)
T 3c5r_A 71 TTGYQNDSPLHDAAKNGH 88 (137)
T ss_dssp CCCGGGCCHHHHHHHTTC
T ss_pred CcCCCCCCHHHHHHHcCC
Confidence 999999999998875543
No 174
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=98.94 E-value=2.3e-11 Score=125.54 Aligned_cols=103 Identities=16% Similarity=0.003 Sum_probs=84.3
Q ss_pred CCcceeeeeecCCHHHHHHHHhcCCCC---CCCCCCCCcccccccccCcccccccccchhHHHHHHhhcc----------
Q 006573 529 LPLSLCFAALRGDDLLLHQLLKRGLDP---NESDNNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFNLF---------- 595 (640)
Q Consensus 529 l~~~l~~a~~~g~~~~v~~Ll~~g~~~---n~~d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~~---------- 595 (640)
..++++.|+..|+.++++.|+++|+.. +..|..|.||| ++|+..|+.++|++|+++|+
T Consensus 92 ~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL---------~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~ 162 (376)
T 2aja_A 92 SEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAF---------RLAAENGHLHVLNRLCELAPTEIMAMIQAE 162 (376)
T ss_dssp HHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHH---------HHHHHTTCHHHHHHHHHSCTTTHHHHHSHH
T ss_pred cCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHH---------HHHHHcCCHHHHHHHHhCCCCccccccCCC
Confidence 347888999999999999999998732 24455678999 88888888999999999884
Q ss_pred -cchhhHhhcCCCHHHHHHHHhccCCCCC--CCcccceeeeeec-cccC
Q 006573 596 -YFKQHIAASKGSENCVLLLLDYEADPNS--IGMLVTKYIIRFF-GFVH 640 (640)
Q Consensus 596 -~~~~h~a~~~g~~~~~~~L~~~ga~~~~--~~~~g~~~~~~~~-~~~~ 640 (640)
.+|||+||..|+.++|++|+++|++++. +|..|.|||+.|. ..+|
T Consensus 163 ~~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~ 211 (376)
T 2aja_A 163 NYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGH 211 (376)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCC
T ss_pred CCCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCC
Confidence 3589999999999999999999999988 9999999999887 6655
No 175
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.94 E-value=1.7e-09 Score=105.86 Aligned_cols=61 Identities=26% Similarity=0.399 Sum_probs=55.2
Q ss_pred HHHHHHHhhhhhhcccccCCcccCCchhh------HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhh
Q 006573 250 RYVTSMYWSITTLTTVGYGDLHPVNTREM------VFDILFMLFNLGLTAYLIGNMTNLVVHGTSRT 310 (640)
Q Consensus 250 ~y~~s~yw~~~t~ttvGygd~~p~t~~e~------~~~i~~~i~g~~~~a~~i~~i~~~~~~~~~~~ 310 (640)
+|.+|+||+++|+|||||||+.|.+..++ +++++++++|+.+++++++.+++.+....++.
T Consensus 224 ~~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~~~~~r~ 290 (309)
T 3um7_A 224 SKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRVVSRRT 290 (309)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTC
T ss_pred CHHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999999999999999987 49999999999999999999998887665444
No 176
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.93 E-value=5e-09 Score=100.91 Aligned_cols=55 Identities=18% Similarity=0.501 Sum_probs=52.1
Q ss_pred HHHHHHHhhhhhhcccccCCcccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006573 250 RYVTSMYWSITTLTTVGYGDLHPVNTREMVFDILFMLFNLGLTAYLIGNMTNLVV 304 (640)
Q Consensus 250 ~y~~s~yw~~~t~ttvGygd~~p~t~~e~~~~i~~~i~g~~~~a~~i~~i~~~~~ 304 (640)
+|.+|+||+++|+||+||||++|.|..+|+++++.+++|+.++++.++.++..+.
T Consensus 93 ~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~ 147 (280)
T 3ukm_A 93 DFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRIT 147 (280)
T ss_dssp SHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999876554
No 177
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=98.93 E-value=3.3e-09 Score=105.31 Aligned_cols=98 Identities=16% Similarity=0.205 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC-----CCccccccccCCCccCcchHHHHHHHHHhhhhhhcccccCCccc--CCc
Q 006573 203 KLIFVTLFAVHCAGCFYYLLAARYHN-----PERTWIGASLGQNFLEKSLWIRYVTSMYWSITTLTTVGYGDLHP--VNT 275 (640)
Q Consensus 203 ~l~~~~~~~~h~~ac~~~~~~~~~~~-----~~~~W~~~~~~~~~~~~~~~~~y~~s~yw~~~t~ttvGygd~~p--~t~ 275 (640)
.+++.+++..-++|.+||+++....+ ..++|.. ......++..||||++.|+||+||||+.| .++
T Consensus 50 ~f~~~y~~swl~Fally~~ia~~~gdl~~~~~~~~~~~--------Cv~~~~sf~~af~fSv~T~TTvGYGd~~p~~~~~ 121 (343)
T 3spc_A 50 LFSLAFLVSWLLFGLIFWLIALIHGDLENPGGDDTFKP--------CVLQVNGFVAAFLFSIETQTTIGYGFRCVTEECP 121 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTGGGCTTCCSSCCC--------SEETCCSHHHHHHHHHHHHSCCCCSSSEECSSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCccccccccccccc--------cccccCCHHHHhheeeeeeEeecCCCccCCCCCH
Confidence 33455566677888999887643211 1222321 11234688999999999999999999986 489
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q 006573 276 REMVFDILFMLFNLGLTAYLIGNMTNLVVHGTS 308 (640)
Q Consensus 276 ~e~~~~i~~~i~g~~~~a~~i~~i~~~~~~~~~ 308 (640)
.+++++.+.+++|+++.|.++|.+.+-+.+..+
T Consensus 122 ~~~~l~~~~~l~G~~l~a~~~giv~ak~srp~~ 154 (343)
T 3spc_A 122 LAVFMVVVQSIVGCIIDSFMIGAIMAKMARPKK 154 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 999999999999999999999999988876543
No 178
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=98.91 E-value=3.6e-10 Score=115.41 Aligned_cols=99 Identities=24% Similarity=0.185 Sum_probs=73.3
Q ss_pred CcceeeeeecCCHHHHHHHHhcCCCCCCCCC-CCCcccccccccCcccccccccchhHHHHHHhhccc---------chh
Q 006573 530 PLSLCFAALRGDDLLLHQLLKRGLDPNESDN-NGRTALVCLTHFNSEFFSIPISCNNVIKFLLFNLFY---------FKQ 599 (640)
Q Consensus 530 ~~~l~~a~~~g~~~~v~~Ll~~g~~~n~~d~-~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~---------~~~ 599 (640)
.++++.|+..|+.++++.|+++|+|+|.+|. .|+||| |+|+..++.++|++|+++|+. +++
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpL---------h~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~ 96 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPL---------HNAVQMSREDIVELLLRHGADPVLRKKNGATPF 96 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHH---------HHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHH---------HHHHHcCCHHHHHHHHHcCCchhhhccCCCchh
Confidence 3557779999999999999999999998875 589999 777777788899999887633 256
Q ss_pred hHhhcCCCHHHHHHHHhccCCCCCCCcccceeeeeecc
Q 006573 600 HIAASKGSENCVLLLLDYEADPNSIGMLVTKYIIRFFG 637 (640)
Q Consensus 600 h~a~~~g~~~~~~~L~~~ga~~~~~~~~g~~~~~~~~~ 637 (640)
|.++..+..+.+..++++|+++|.+|..|+||++.|..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~ 134 (337)
T 4g8k_A 97 ILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAV 134 (337)
T ss_dssp HHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHH
T ss_pred HHHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHH
Confidence 66666666666666666666666666666666665543
No 179
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=98.86 E-value=6.7e-09 Score=113.69 Aligned_cols=86 Identities=14% Similarity=0.293 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCccCcchHHHHHHHHHhhhhhhcccccCCcccCCchhhH
Q 006573 200 RCCKLIFVTLFAVHCAGCFYYLLAARYHNPERTWIGASLGQNFLEKSLWIRYVTSMYWSITTLTTVGYGDLHPVNTREMV 279 (640)
Q Consensus 200 ~l~~l~~~~~~~~h~~ac~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~y~~s~yw~~~t~ttvGygd~~p~t~~e~~ 279 (640)
.+...++.+++++++++++|+++....+.. . .+|.+|+||+++||||+||||++|.|..+++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~--~----------------~~~~~~~y~~~~t~tTvGygd~~p~~~~~~~ 80 (565)
T 4gx0_A 19 VLLLYCAFLLVMLLAYASIFRYLMWHLEGR--A----------------YSFMAGIYWTITVMTTLGFGDITFESDAGYL 80 (565)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--C----------------CCHHHHHHHHHHHHTTCCCCSSCCCSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--C----------------CchhhhhheeeeeeeeecCCCcCCCCccHHH
Confidence 455566666667777777777665311111 1 1578999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHH
Q 006573 280 FDILFMLFNLGLTAYLIGN-MTNLV 303 (640)
Q Consensus 280 ~~i~~~i~g~~~~a~~i~~-i~~~~ 303 (640)
++++++++|++++++.++. +.+.+
T Consensus 81 ~~~~~~~~g~~~~~~~~~~~~~~~~ 105 (565)
T 4gx0_A 81 FASIVTVSGVIFLDIILPFGFVSMF 105 (565)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987 44444
No 180
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=98.85 E-value=1.8e-10 Score=100.66 Aligned_cols=114 Identities=14% Similarity=0.186 Sum_probs=75.5
Q ss_pred ccccCCCeEEcCCChhHHHHHHHHHHHHHHHHHHhhhheecccC--CCCCeeehhhHhhHHHhhhheeeeeEEEEeCCce
Q 006573 48 RRVKLRRFIVSPYDRRYRVWETYLVLLVIYTAWASPFEFGFLRK--PQRPLSVIDNVVNGFFAVDIILTFFVAYLDKATY 125 (640)
Q Consensus 48 ~~~~~~~~~~~P~s~~~~~w~~~~~~~~~~~~~~~p~~~~f~~~--~~~~~~~i~~~~~~~f~~d~~l~f~t~~~~~~~~ 125 (640)
.+.+.+..+.+| .|+.++.++++.+++++.++...... ....+..+|.+|.++|++|+++|+..+
T Consensus 10 ~~~~~~~~~e~~------~f~~~i~~lil~sv~~v~~et~~~i~~~~~~~~~~id~~~~~iF~~Ey~lRl~~a------- 76 (147)
T 2kyh_A 10 RVRNIGDVMEHP------LVELGVSYAALLSVIVVVVEYTMQLSGEYLVRLYLVDLILVIILWADYAYRAYKS------- 76 (147)
T ss_dssp HHHHHHHHHTCH------HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHhCc------hHHHHHHHHHHHHHHHHHHHHhHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
Confidence 345555555554 37888888888888887777643221 123467799999999999999999765
Q ss_pred EEEeChhHHHHHHhhhhhhhHhHhhccHHHHhhhCCCCccchhhhhHHHHHHHHHHHHHHH
Q 006573 126 LLVDCPKQIAWKYASSWLVFDVISTIPSELAQKISPKPLQSYGLFNMLRLWRLRRVSALFS 186 (640)
Q Consensus 126 ~~v~~~~~i~~~Yl~~~f~~Dlis~lP~~~~~~~~~~~~~~~~~l~~lrllrl~r~~~~~~ 186 (640)
|++ ++|+++ .++|++|++|++..... + ..++++|++|++|++|+.++.+
T Consensus 77 -----~~k--~~f~~~-~iiDllailP~~~~~~~-~---~~lr~lRvlRllRv~Rllrl~r 125 (147)
T 2kyh_A 77 -----GDP--AGYVKK-TLYEIPALVPAGLLALI-E---GHLAGLGLFRLVRLLRFLRILL 125 (147)
T ss_dssp -----TCH--HHHHHH-STTTHHHHCCHHHHHHH-H---HHHHHHTCCHHHHHHHHHHHHH
T ss_pred -----CcH--HHHHHH-HHHHHHHHHHHHHHHHH-H---hHHHHHHHHHHHHHHHHHHHHH
Confidence 333 789987 79999999999865433 1 1234444444444444444433
No 181
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.83 E-value=6.4e-09 Score=100.16 Aligned_cols=56 Identities=20% Similarity=0.333 Sum_probs=51.3
Q ss_pred HHHHHHHhhhhhhcccccCCcccCCch-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006573 250 RYVTSMYWSITTLTTVGYGDLHPVNTR-------EMVFDILFMLFNLGLTAYLIGNMTNLVVH 305 (640)
Q Consensus 250 ~y~~s~yw~~~t~ttvGygd~~p~t~~-------e~~~~i~~~i~g~~~~a~~i~~i~~~~~~ 305 (640)
+|++|+||+++|+|||||||+.|.+.. +++++++.+++|+.+++++++.+.+....
T Consensus 201 s~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~~ 263 (280)
T 3ukm_A 201 NFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHEL 263 (280)
T ss_dssp CHHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHH
T ss_pred chhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588999999999999999999999985 59999999999999999999999876543
No 182
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=98.82 E-value=1.2e-09 Score=92.38 Aligned_cols=74 Identities=23% Similarity=0.030 Sum_probs=66.3
Q ss_pred CCCCCCCcccccccccCcccccccccchhHHHHHHhhc---------ccchhhHhhcCCCHHHHHHHHhccCCCCCCCcc
Q 006573 557 ESDNNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFNL---------FYFKQHIAASKGSENCVLLLLDYEADPNSIGML 627 (640)
Q Consensus 557 ~~d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~---------~~~~~h~a~~~g~~~~~~~L~~~ga~~~~~~~~ 627 (640)
-+|.+|+||| +.++..+..++++.|++++ +.+|||+|+..|+.+++++|+++|+++|.+|..
T Consensus 4 ~~d~~g~t~L---------~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~ 74 (115)
T 2l6b_A 4 WGSKDGNTPL---------HNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKD 74 (115)
T ss_dssp CCSCSSCCHH---------HHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTT
T ss_pred ccCCCCCCHH---------HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCC
Confidence 4688999999 7777778899999999885 566999999999999999999999999999999
Q ss_pred cceeeeeecccc
Q 006573 628 VTKYIIRFFGFV 639 (640)
Q Consensus 628 g~~~~~~~~~~~ 639 (640)
|.+||..|....
T Consensus 75 g~tpl~~A~~~~ 86 (115)
T 2l6b_A 75 GNTPEHLAKKNG 86 (115)
T ss_dssp CCCTTHHHHTTT
T ss_pred CCCHHHHHHHCC
Confidence 999999887554
No 183
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=98.82 E-value=3.8e-09 Score=85.40 Aligned_cols=62 Identities=39% Similarity=0.454 Sum_probs=58.6
Q ss_pred CCCCCcceeeeeecCCHHHHHHHHhcCCCCCCCCCCCCcccccccccCcccccccccchhHHHHHHhhcccchhhHhhcC
Q 006573 526 RMDLPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFNLFYFKQHIAASK 605 (640)
Q Consensus 526 ~~~l~~~l~~a~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~h~a~~~ 605 (640)
+....+|+++|+..|+.++++.|+++|+++|.+|..|+||| |+|+..
T Consensus 32 d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l---------------------------------~~A~~~ 78 (93)
T 1n0q_A 32 DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPL---------------------------------HLAARN 78 (93)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH---------------------------------HHHHHT
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHH---------------------------------HHHHHc
Confidence 44567899999999999999999999999999999999999 999999
Q ss_pred CCHHHHHHHHhccCC
Q 006573 606 GSENCVLLLLDYEAD 620 (640)
Q Consensus 606 g~~~~~~~L~~~ga~ 620 (640)
|+.+++++|+++|||
T Consensus 79 ~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 79 GHLEVVKLLLEAGAY 93 (93)
T ss_dssp TCHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHcCCC
Confidence 999999999999996
No 184
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=98.79 E-value=1.1e-09 Score=104.44 Aligned_cols=94 Identities=14% Similarity=0.105 Sum_probs=71.2
Q ss_pred CCCCCcceeeeeecCCHHHHHHHHhc-CCCCCCCCCCCCcccccccccCcccccccccchhHHHHHHhhc---------c
Q 006573 526 RMDLPLSLCFAALRGDDLLLHQLLKR-GLDPNESDNNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFNL---------F 595 (640)
Q Consensus 526 ~~~l~~~l~~a~~~g~~~~v~~Ll~~-g~~~n~~d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~---------~ 595 (640)
+..+.+++++|+..|+.++++.|++. |+++|.+|..|+||| ++++..++.+++++|+++| +
T Consensus 103 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL---------~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g 173 (222)
T 3ehr_A 103 DKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTAL---------HAAAWKGYADIVQLLLAKGARTDLRNIEK 173 (222)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHH---------HHHHHHTCHHHHHHHHHHTCCSCCCCTTS
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHH---------HHHHHcCCHHHHHHHHHcCCCCccccCCC
Confidence 44567889999999999999999998 999999999999999 7777788899999999986 5
Q ss_pred cchhhHhhcCCCHHHHHHHHhccCCCCCCCccc
Q 006573 596 YFKQHIAASKGSENCVLLLLDYEADPNSIGMLV 628 (640)
Q Consensus 596 ~~~~h~a~~~g~~~~~~~L~~~ga~~~~~~~~g 628 (640)
.+|+|+|+..|+.++++.|+++|++.+.++..|
T Consensus 174 ~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~ 206 (222)
T 3ehr_A 174 KLAFDMATNAACASLLKKKQGTDAVRTLSNAED 206 (222)
T ss_dssp CCHHHHCCSHHHHHHHC----------------
T ss_pred CCHHHHhcchhHHHHHHHHhccchhhhccchhh
Confidence 669999999999999999999999998877655
No 185
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=98.78 E-value=5.4e-10 Score=96.34 Aligned_cols=80 Identities=11% Similarity=0.127 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhheecccCC--CCCeeehhhHhhHHHhhhheeeeeEEEEeCCceEEEeChhHHHHHHhhhh
Q 006573 65 RVWETYLVLLVIYTAWASPFEFGFLRKP--QRPLSVIDNVVNGFFAVDIILTFFVAYLDKATYLLVDCPKQIAWKYASSW 142 (640)
Q Consensus 65 ~~w~~~~~~~~~~~~~~~p~~~~f~~~~--~~~~~~i~~~~~~~f~~d~~l~f~t~~~~~~~~~~v~~~~~i~~~Yl~~~ 142 (640)
+.++.++.++++.+++....+......+ ...+..+|+++.++|++|+++|+..+ +++ ++|++ |
T Consensus 6 ~~f~~~i~~lIlls~~~~~~et~~~~~~~~~~~l~~~d~~~~~iFt~E~~lRl~~~------------~~~--~~y~~-~ 70 (132)
T 1ors_C 6 PLVELGVSYAALLSVIVVVVEYTMQLSGEYLVRLYLVDLILVIILWADYAYRAYKS------------GDP--AGYVK-K 70 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHT------------TST--TTTTT-T
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------CCH--HHHHH-H
Confidence 4578888888888888877766322111 23466799999999999999999754 222 78999 9
Q ss_pred hhhHhHhhccHHHHhhh
Q 006573 143 LVFDVISTIPSELAQKI 159 (640)
Q Consensus 143 f~~Dlis~lP~~~~~~~ 159 (640)
.++|+++++|+++....
T Consensus 71 niiDllailp~~~~~~~ 87 (132)
T 1ors_C 71 TLYEIPALVPAGLLALI 87 (132)
T ss_dssp CGGGTGGGSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999865543
No 186
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=98.76 E-value=5.1e-10 Score=113.79 Aligned_cols=95 Identities=15% Similarity=-0.015 Sum_probs=81.8
Q ss_pred eeeeecCCHHHHHHHHhcCCCCCC-CCCCCCcccccccccCcccccccccchhHHHHHHhhc---------ccchhhHhh
Q 006573 534 CFAALRGDDLLLHQLLKRGLDPNE-SDNNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFNL---------FYFKQHIAA 603 (640)
Q Consensus 534 ~~a~~~g~~~~v~~Ll~~g~~~n~-~d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~---------~~~~~h~a~ 603 (640)
+.++..+..++++.|++.|+++|. +|..|+||| |+++..++.++|++|+++| +.+|||+|+
T Consensus 102 ~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpL---------h~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~ 172 (327)
T 1sw6_A 102 HVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPL---------HWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAV 172 (327)
T ss_dssp --CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHH---------HHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHH
T ss_pred HHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHH---------HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH
Confidence 456677777899999999999999 899999999 7777888899999999986 556999999
Q ss_pred cCCC---HHHHHHHHhcc-CCCCCCCcccceeeeeecc
Q 006573 604 SKGS---ENCVLLLLDYE-ADPNSIGMLVTKYIIRFFG 637 (640)
Q Consensus 604 ~~g~---~~~~~~L~~~g-a~~~~~~~~g~~~~~~~~~ 637 (640)
..|+ .++++.|+++| +++|.+|..|+|||+.|..
T Consensus 173 ~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~ 210 (327)
T 1sw6_A 173 KSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIII 210 (327)
T ss_dssp HSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHH
T ss_pred HhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHH
Confidence 9998 78888888887 8899999999999988764
No 187
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=98.74 E-value=8.8e-09 Score=105.73 Aligned_cols=100 Identities=20% Similarity=0.123 Sum_probs=76.5
Q ss_pred CCCCcceeeeeecCCHHHHHHHHhcCCCCCCCCCCCCcccccccccCcccccccccchhHHHHHHhhc---------ccc
Q 006573 527 MDLPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFNL---------FYF 597 (640)
Q Consensus 527 ~~l~~~l~~a~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~---------~~~ 597 (640)
....+++|+|+..|+.++++.|+++|+++|.+|..|+||| |+++..++.+++++|+++| +.+
T Consensus 233 ~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpL---------h~A~~~g~~~~v~~LL~~Gad~~~~d~~G~T 303 (368)
T 3jue_A 233 QDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPL---------HHATILGHTGLACLFLKRGADLGARDSEGRD 303 (368)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH---------HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred cCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHH---------HHHHHcCcHHHHHHHHHCcCCCCCcCCCCCC
Confidence 4567889999999999999999999999999999999999 7777778899999999986 556
Q ss_pred hhhHhhcCCCHHHHHHHHhccC---CCCCCCcccceeeeee
Q 006573 598 KQHIAASKGSENCVLLLLDYEA---DPNSIGMLVTKYIIRF 635 (640)
Q Consensus 598 ~~h~a~~~g~~~~~~~L~~~ga---~~~~~~~~g~~~~~~~ 635 (640)
|||+|+..|+.+++++|+++|+ +.+..+..|.+++-.+
T Consensus 304 pL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~ 344 (368)
T 3jue_A 304 PLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIF 344 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC-------------------
T ss_pred HHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHH
Confidence 9999999999999999999874 4445666677765443
No 188
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=98.72 E-value=2.6e-09 Score=91.38 Aligned_cols=72 Identities=14% Similarity=-0.054 Sum_probs=62.6
Q ss_pred CCCCCcccccccccCcccccccccchhHHHHHHhhc---------ccchhhHhhcCCCHHHHHHHHhccCCCCCCCcccc
Q 006573 559 DNNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFNL---------FYFKQHIAASKGSENCVLLLLDYEADPNSIGMLVT 629 (640)
Q Consensus 559 d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~---------~~~~~h~a~~~g~~~~~~~L~~~ga~~~~~~~~g~ 629 (640)
+..|.||| +.++..+..++++.|++++ +.+|||+|+..|+.+++++|+++|+++|.+|..|+
T Consensus 4 ~~~~~~~l---------~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~ 74 (123)
T 3aaa_C 4 GSMCDKEF---------MWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHI 74 (123)
T ss_dssp ---CHHHH---------HHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSC
T ss_pred ccccchHH---------HHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCC
Confidence 45788999 7788888899999999885 56699999999999999999999999999999999
Q ss_pred eeeeeecccc
Q 006573 630 KYIIRFFGFV 639 (640)
Q Consensus 630 ~~~~~~~~~~ 639 (640)
|||+.|....
T Consensus 75 tpL~~A~~~~ 84 (123)
T 3aaa_C 75 TPLLSAVYEG 84 (123)
T ss_dssp CHHHHHHHHT
T ss_pred CHHHHHHHcC
Confidence 9999886544
No 189
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=98.62 E-value=7.4e-10 Score=102.31 Aligned_cols=73 Identities=19% Similarity=0.099 Sum_probs=63.4
Q ss_pred CCCCCcccccccccCcccccccccchhHHHHHHhh--------cccchhhHhhcCCCHHHHHHHHhccCCCCCCC-cccc
Q 006573 559 DNNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFN--------LFYFKQHIAASKGSENCVLLLLDYEADPNSIG-MLVT 629 (640)
Q Consensus 559 d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~--------~~~~~~h~a~~~g~~~~~~~L~~~ga~~~~~~-~~g~ 629 (640)
|..|+||| +.++..+..++++.|++. .+.+|||+|+..|+.+++++|+++|+++|.+| ..|+
T Consensus 41 ~~~g~t~L---------~~A~~~g~~~~v~~Ll~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~ 111 (183)
T 3deo_A 41 VSEYETPW---------WTAARKADEQALSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGL 111 (183)
T ss_dssp HHHHHHHH---------HHHHHTTCHHHHHHHTTTSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSC
T ss_pred CCCCCCHH---------HHHHHcCCHHHHHHHHhcCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCC
Confidence 45789999 777777889999999972 26679999999999999999999999999999 8999
Q ss_pred eeeeeeccccC
Q 006573 630 KYIIRFFGFVH 640 (640)
Q Consensus 630 ~~~~~~~~~~~ 640 (640)
|||+.|....|
T Consensus 112 tpL~~A~~~~~ 122 (183)
T 3deo_A 112 TALHMAAGYVR 122 (183)
T ss_dssp CHHHHHHHTTC
T ss_pred CHHHHHHhcCc
Confidence 99998876543
No 190
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=98.55 E-value=2.5e-09 Score=110.18 Aligned_cols=88 Identities=15% Similarity=0.078 Sum_probs=73.0
Q ss_pred CcceeeeeecCCHHHHHHHHhcCCCCCC--CCCCCCcccccccccCcccccc-cccchhHHHHHHhhc--ccchhhHhhc
Q 006573 530 PLSLCFAALRGDDLLLHQLLKRGLDPNE--SDNNGRTALVCLTHFNSEFFSI-PISCNNVIKFLLFNL--FYFKQHIAAS 604 (640)
Q Consensus 530 ~~~l~~a~~~g~~~~v~~Ll~~g~~~n~--~d~~g~t~L~~~~~~~~~~~~~-~~~~~~~~~~L~~~~--~~~~~h~a~~ 604 (640)
.+|++.|+..|+.++++.|+++|++++. .|..|.||| ++|+ ..|+.++|++|+++| +.+|+|.|+.
T Consensus 164 ~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL---------~~Aa~~~G~~eiv~~Ll~~ga~~~taL~~Aa~ 234 (376)
T 2aja_A 164 YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAF---------RWAAVGRGHHNVINFLLDCPVMLAYAEIHEFE 234 (376)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHH---------HHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTT
T ss_pred CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHH---------HHHHHHCCCHHHHHHHHhCCCccchHHHHHHH
Confidence 6788888888888888888888888777 777888888 7777 777888888888875 5568888888
Q ss_pred CCCHHHHHHHHhccCCCCCCCc
Q 006573 605 KGSENCVLLLLDYEADPNSIGM 626 (640)
Q Consensus 605 ~g~~~~~~~L~~~ga~~~~~~~ 626 (640)
.|+.+++++|+++|++++.+|.
T Consensus 235 ~g~~evv~lL~~~ga~~~~~~~ 256 (376)
T 2aja_A 235 YGEKYVNPFIARHVNRLKEMHD 256 (376)
T ss_dssp TTTTTHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHhcCcccccccH
Confidence 8888888888888888877654
No 191
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=98.49 E-value=7.7e-09 Score=105.35 Aligned_cols=57 Identities=26% Similarity=0.665 Sum_probs=51.6
Q ss_pred HHHHHHHhhhhhhcccccCCcccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006573 250 RYVTSMYWSITTLTTVGYGDLHPVNTREMVFDILFMLFNLGLTAYLIGNMTNLVVHG 306 (640)
Q Consensus 250 ~y~~s~yw~~~t~ttvGygd~~p~t~~e~~~~i~~~i~g~~~~a~~i~~i~~~~~~~ 306 (640)
+|.+|+||+++|+||+||||+.|.|..+++++++++++|+++++++++.+.+.+...
T Consensus 45 ~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (336)
T 1lnq_A 45 SWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINR 101 (336)
T ss_dssp CSSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC---
T ss_pred CHHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577899999999999999999999999999999999999999999999998777654
No 192
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=98.47 E-value=6.9e-08 Score=93.46 Aligned_cols=88 Identities=22% Similarity=0.137 Sum_probs=74.2
Q ss_pred ccCCCCCcceeeeeecCCHHHHHHHHhcCCCCCCCC-CCCCcccccccccCcccccccccchhHHHHHHhhc--------
Q 006573 524 RGRMDLPLSLCFAALRGDDLLLHQLLKRGLDPNESD-NNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFNL-------- 594 (640)
Q Consensus 524 ~g~~~l~~~l~~a~~~g~~~~v~~Ll~~g~~~n~~d-~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~-------- 594 (640)
..+..+.+|+|+|+..|+.++++.|+++|+++|.+| ..|+||| |+++..++.+++++|+++|
T Consensus 72 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L---------~~A~~~g~~~~v~~Ll~~ga~~~~~d~ 142 (244)
T 3ui2_A 72 AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTAL---------HMAAGYVRPEVVEALVELGADIEVEDE 142 (244)
T ss_dssp CBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHH---------HHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred CcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHH---------HHHHHcCCHHHHHHHHHCCCCCCCCCC
Confidence 334457789999999999999999999999999998 7899999 7777778899999999986
Q ss_pred -ccchhhHh----------------hcCCCHHHHHHHHhccCC
Q 006573 595 -FYFKQHIA----------------ASKGSENCVLLLLDYEAD 620 (640)
Q Consensus 595 -~~~~~h~a----------------~~~g~~~~~~~L~~~ga~ 620 (640)
+.+|+|+| +..|+.+++++|++++.+
T Consensus 143 ~g~t~l~~A~~~~~~~~~~~~l~~a~~~g~~~iv~~L~~~~~~ 185 (244)
T 3ui2_A 143 RGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFE 185 (244)
T ss_dssp TCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred CCCcHHHHHHHHHhccCCCCHHHHHHHcChHHHHHHHHHhccc
Confidence 33355554 588999999999998665
No 193
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=98.10 E-value=3.4e-06 Score=70.16 Aligned_cols=56 Identities=29% Similarity=0.378 Sum_probs=52.4
Q ss_pred CCCCCcceeeeeecCCHHHHHHHHhcCCCCCCCCCCCCcccccccccCcccccccccchhHHHHHHhhcccchhhHhhcC
Q 006573 526 RMDLPLSLCFAALRGDDLLLHQLLKRGLDPNESDNNGRTALVCLTHFNSEFFSIPISCNNVIKFLLFNLFYFKQHIAASK 605 (640)
Q Consensus 526 ~~~l~~~l~~a~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~h~a~~~ 605 (640)
+....+++++|+..|+.++++.|+++|+++|.+|..|+||| |+|+..
T Consensus 54 d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl---------------------------------~~A~~~ 100 (110)
T 2zgd_A 54 DKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAF---------------------------------DISIDN 100 (110)
T ss_dssp CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH---------------------------------HHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHH---------------------------------HHHHHc
Confidence 44567889999999999999999999999999999999999 999999
Q ss_pred CCHHHHHHH
Q 006573 606 GSENCVLLL 614 (640)
Q Consensus 606 g~~~~~~~L 614 (640)
|+.+++++|
T Consensus 101 ~~~~~~~~L 109 (110)
T 2zgd_A 101 GNEDLAEIL 109 (110)
T ss_dssp TCHHHHHHH
T ss_pred CCHHHHHHh
Confidence 999999987
No 194
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=76.88 E-value=2.7 Score=47.54 Aligned_cols=56 Identities=14% Similarity=0.335 Sum_probs=46.3
Q ss_pred HHHHHHHHhhhhhhcccccCCcccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006573 249 IRYVTSMYWSITTLTTVGYGDLHPVNTREMVFDILFMLFNLGLTAYLIGNMTNLVVH 305 (640)
Q Consensus 249 ~~y~~s~yw~~~t~ttvGygd~~p~t~~e~~~~i~~~i~g~~~~a~~i~~i~~~~~~ 305 (640)
.....++|+++.++++.| ++..|.+...+++.++++++++++.+...+.+++.+..
T Consensus 562 ~~~~~~~~~~~~~l~~~g-~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 617 (823)
T 3kg2_A 562 FGIFNSLWFSLGAFMQQG-ADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTV 617 (823)
T ss_dssp HHHHHHHHHTTTTSCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcC-CCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 457789999999999999 78899999999999999999999999999999999874
No 195
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=76.14 E-value=15 Score=29.44 Aligned_cols=67 Identities=16% Similarity=0.121 Sum_probs=45.8
Q ss_pred cccccccCCCeEEEeCCCCCeEEEEEeceEEEEEeeCCceEEEEEecCCCeeechhhhcCCCeeeEEEEccceEEEE
Q 006573 399 MKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQVVGEAKTGEICGEIGVLCYRPQLFTVRTKRLSQLLR 475 (640)
Q Consensus 399 ~~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~a~~~~~v~~ 475 (640)
+....++||..+-..-.+.+.++++++|.+++.. +|+ ...+.+||.+=-- .+.+ ..+++.+++.++.
T Consensus 38 v~~~~l~~G~~~~~H~H~~~e~~~Vl~G~~~~~i--~~~---~~~l~~Gd~i~ip---~~~~--H~~~~~~~~~~~~ 104 (114)
T 3fjs_A 38 VMRMVLPAGKQVGSHSVAGPSTIQCLEGEVEIGV--DGA---QRRLHQGDLLYLG---AGAA--HDVNAITNTSLLV 104 (114)
T ss_dssp EEEEEECTTCEEEEECCSSCEEEEEEESCEEEEE--TTE---EEEECTTEEEEEC---TTCC--EEEEESSSEEEEE
T ss_pred EEEEEECCCCccCceeCCCcEEEEEEECEEEEEE--CCE---EEEECCCCEEEEC---CCCc--EEEEeCCCcEEEE
Confidence 3455688888877766667899999999999876 443 3578999876321 2333 4566677766543
No 196
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=73.92 E-value=13 Score=34.31 Aligned_cols=69 Identities=7% Similarity=0.213 Sum_probs=51.7
Q ss_pred cccccccCCCeEEEeCCCCCeEEEEEeceEEEEEeeCCceEEEEEecCCCeeechhhhcCCCeeeEEEEccceEEEEee
Q 006573 399 MKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQVVGEAKTGEICGEIGVLCYRPQLFTVRTKRLSQLLRLN 477 (640)
Q Consensus 399 ~~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~a~~~~~v~~i~ 477 (640)
+....+.||+.+-..--+.+.+++|++|.+++.. +|+ ...+.+||.+=- -.+. +..++|.+++.++.+.
T Consensus 39 ~~~~~~~~G~~~~~h~h~~~~~~~Vl~G~~~~~i--~~~---~~~l~~Gd~~~~---p~~~--~H~~~a~~~~~~l~i~ 107 (227)
T 3rns_A 39 ISLFSLAKDEEITAEAMLGNRYYYCFNGNGEIFI--ENN---KKTISNGDFLEI---TANH--NYSIEARDNLKLIEIG 107 (227)
T ss_dssp EEEEEECTTCEEEECSCSSCEEEEEEESEEEEEE--SSC---EEEEETTEEEEE---CSSC--CEEEEESSSEEEEEEE
T ss_pred EEEEEECCCCccCccccCCCEEEEEEeCEEEEEE--CCE---EEEECCCCEEEE---CCCC--CEEEEECCCcEEEEEE
Confidence 4556789999988888889999999999999987 444 247889987521 1233 4567789999998773
No 197
>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus}
Probab=73.82 E-value=4 Score=33.03 Aligned_cols=64 Identities=17% Similarity=0.225 Sum_probs=32.7
Q ss_pred chHHHHHHHHHhhhhhhcccccCCcc--c---CCchhhHH-HHHHHHHHHHHHHHHHHHHHHHHHhhchh
Q 006573 246 SLWIRYVTSMYWSITTLTTVGYGDLH--P---VNTREMVF-DILFMLFNLGLTAYLIGNMTNLVVHGTSR 309 (640)
Q Consensus 246 ~~~~~y~~s~yw~~~t~ttvGygd~~--p---~t~~e~~~-~i~~~i~g~~~~a~~i~~i~~~~~~~~~~ 309 (640)
..+++...|+.-....+|+-|+.+.. | .++...++ .+++.+...++.-+.++.+.+.+....++
T Consensus 34 ~~F~~~~~s~ltLF~i~T~e~W~~~~~~~~~~~~~~a~iyFi~fi~i~~fi~lNLfiaVi~~~f~~~~~~ 103 (112)
T 4f4l_A 34 EWFGDLSKSLYTLFQVMTLESWSMGIVRPVMNVHPNAWVFFIPFIMLTTFTVLNLFIGIIVDAMAITKEQ 103 (112)
T ss_dssp HHHSSHHHHHHHHHHHHTTTTCCCCCHHHHTTTSTTTHHHHHHHHHHHHHHHHHHHTTTC----------
T ss_pred ccccCHHHHHHHHHHHHHccccHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677778877777777877775431 2 22333344 44444445566677888887776654433
No 198
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=71.25 E-value=12 Score=29.83 Aligned_cols=64 Identities=11% Similarity=0.132 Sum_probs=39.8
Q ss_pred cccCCCeEEEeCCCCCeEEEEEeceEEEEEeeCCceEEEEEecCCCeeechhhhcCCCeeeEEEEccceEEEEe
Q 006573 403 YFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQVVGEAKTGEICGEIGVLCYRPQLFTVRTKRLSQLLRL 476 (640)
Q Consensus 403 ~~~~ge~i~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~a~~~~~v~~i 476 (640)
.+++|..+-....+.+.+++|++|.+.+.. +|+ ...+.+||.+=- -.+.+.. +++.+++.++.+
T Consensus 44 ~~~~g~~~~~H~h~~~e~~~vl~G~~~~~i--~~~---~~~l~~Gd~i~i---~~~~~H~--~~~~~~~~~~~i 107 (114)
T 2ozj_A 44 SFADGESVSEEEYFGDTLYLILQGEAVITF--DDQ---KIDLVPEDVLMV---PAHKIHA--IAGKGRFKMLQI 107 (114)
T ss_dssp EEETTSSCCCBCCSSCEEEEEEEEEEEEEE--TTE---EEEECTTCEEEE---CTTCCBE--EEEEEEEEEEEE
T ss_pred EECCCCccccEECCCCeEEEEEeCEEEEEE--CCE---EEEecCCCEEEE---CCCCcEE--EEeCCCcEEEEE
Confidence 355665544444456789999999999876 443 347899997631 1244443 344466666554
No 199
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=68.72 E-value=8.2 Score=37.09 Aligned_cols=24 Identities=17% Similarity=-0.049 Sum_probs=14.0
Q ss_pred HHHHHHHHhhhhhhcccccCCccc
Q 006573 249 IRYVTSMYWSITTLTTVGYGDLHP 272 (640)
Q Consensus 249 ~~y~~s~yw~~~t~ttvGygd~~p 272 (640)
.....++..|+.++..+--++-++
T Consensus 175 ~~~F~s~~~a~~~~~~~~T~~g~~ 198 (285)
T 3rvy_A 175 PEWFGTLGESFYTLFQVMTLESWS 198 (285)
T ss_dssp HHHHSSHHHHHHHHHHHHTTTTCC
T ss_pred ccccCCHHHHHHHHHHHHHhCCCc
Confidence 345677777877765544344433
No 200
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=67.46 E-value=33 Score=27.07 Aligned_cols=68 Identities=7% Similarity=0.095 Sum_probs=44.1
Q ss_pred cccccccCCCeEEEeCCCCCeEEEEEeceEEEEEeeCCceEEEEEecCCCeeechhhhcCCCeeeEEEEccceEEEEe
Q 006573 399 MKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQVVGEAKTGEICGEIGVLCYRPQLFTVRTKRLSQLLRL 476 (640)
Q Consensus 399 ~~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~a~~~~~v~~i 476 (640)
+....++||..+-..-.....+++|++|.+.+.. +|+ ...+.+||.+=- -.+.+. ..++.++++++.+
T Consensus 42 ~~~~~~~~g~~~~~H~H~~~e~~~vl~G~~~~~~--~~~---~~~l~~Gd~~~i---p~~~~H--~~~~~~~~~~~~v 109 (115)
T 1yhf_A 42 ITVFSLDKGQEIGRHSSPGDAMVTILSGLAEITI--DQE---TYRVAEGQTIVM---PAGIPH--ALYAVEAFQMLLV 109 (115)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEESEEEEEE--TTE---EEEEETTCEEEE---CTTSCE--EEEESSCEEEEEE
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEeCEEEEEE--CCE---EEEECCCCEEEE---CCCCCE--EEEECCCceEEEE
Confidence 3445677887765544456789999999998876 443 347889997631 123333 4555667766654
No 201
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=67.02 E-value=21 Score=31.04 Aligned_cols=61 Identities=8% Similarity=-0.001 Sum_probs=39.2
Q ss_pred CCCCCeEEEEEeceEEEEEeeCC---ceEEEEEecCCCeeechhhhcCCCeeeEEEEccceEEEEeeHH
Q 006573 414 NEAPTDFYILVTGAVDLLVLKNG---VEQVVGEAKTGEICGEIGVLCYRPQLFTVRTKRLSQLLRLNRT 479 (640)
Q Consensus 414 g~~~~~ly~I~~G~v~v~~~~~g---~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~a~~~~~v~~i~~~ 479 (640)
-++.++++++++|.+.+...++| ....-..+++||+|=-- .+.|. +-++.++|..+.+.+.
T Consensus 51 ~~~~eE~Fy~lkG~m~l~v~d~g~~~~~~~dv~i~eGdmfllP---~gvpH--sP~r~~e~v~lviErk 114 (176)
T 1zvf_A 51 INPTPEWFYQKKGSMLLKVVDETDAEPKFIDIIINEGDSYLLP---GNVPH--SPVRFADTVGIVVEQD 114 (176)
T ss_dssp ECSSCEEEEEEESCEEEEEEECSSSSCEEEEEEECTTEEEEEC---TTCCE--EEEECTTCEEEEEEEC
T ss_pred CCCCceEEEEEeCEEEEEEEcCCCcccceeeEEECCCCEEEcC---CCCCc--CCcccCCcEEEEEEec
Confidence 45567899999999999776545 12234588999987322 23333 3333567777776653
No 202
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=63.47 E-value=17 Score=29.62 Aligned_cols=66 Identities=15% Similarity=0.108 Sum_probs=42.1
Q ss_pred cccccCCCeEEEeCCCCCeEEEEEeceEEEEEeeCCceEEEEEecCCCeeechhhhcCCCeeeEEEEccceEEEEe
Q 006573 401 AEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQVVGEAKTGEICGEIGVLCYRPQLFTVRTKRLSQLLRL 476 (640)
Q Consensus 401 ~~~~~~ge~i~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~a~~~~~v~~i 476 (640)
...+.||..+-..- ..+++++|++|.+++.. +|+ ...+++||.+--- .+.+...+... +.++++.+
T Consensus 44 ~~~~~pG~~~~~H~-~~~E~~~Vl~G~~~~~~--~g~---~~~l~~GD~v~ip---~g~~H~~~~~~-~~~~~l~v 109 (119)
T 3lwc_A 44 YGRYAPGQSLTETM-AVDDVMIVLEGRLSVST--DGE---TVTAGPGEIVYMP---KGETVTIRSHE-EGALTAYV 109 (119)
T ss_dssp EEEECTTCEEEEEC-SSEEEEEEEEEEEEEEE--TTE---EEEECTTCEEEEC---TTCEEEEEEEE-EEEEEEEE
T ss_pred EEEECCCCCcCccC-CCCEEEEEEeCEEEEEE--CCE---EEEECCCCEEEEC---CCCEEEEEcCC-CCeEEEEE
Confidence 34577887665543 77899999999999976 454 3479999986322 24444333322 55555544
No 203
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=62.24 E-value=9.1 Score=40.36 Aligned_cols=20 Identities=15% Similarity=0.423 Sum_probs=12.6
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 006573 170 FNMLRLWRLRRVSALFSRLE 189 (640)
Q Consensus 170 l~~lrllrl~r~~~~~~~l~ 189 (640)
++.+|++|++|+.|+++.+.
T Consensus 305 ~~~lrvlRllRvlRilkL~r 324 (514)
T 2r9r_B 305 RRVVQIFRIMRILRIFKLSR 324 (514)
T ss_dssp HHHHHHHHHHGGGGGGGGGG
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 34667777777777665443
No 204
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=61.76 E-value=51 Score=29.96 Aligned_cols=16 Identities=25% Similarity=0.536 Sum_probs=8.5
Q ss_pred hhhhhHHHHHHHHHHH
Q 006573 167 YGLFNMLRLWRLRRVS 182 (640)
Q Consensus 167 ~~~l~~lrllrl~r~~ 182 (640)
++++|++|++|+.|+.
T Consensus 99 lr~lRllRllR~~r~~ 114 (223)
T 1orq_C 99 FRLVRLLRFLRILLII 114 (223)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555555555553
No 205
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=60.58 E-value=41 Score=26.59 Aligned_cols=68 Identities=12% Similarity=0.067 Sum_probs=44.2
Q ss_pred cccccccCCCeEEEeCCCCCeEEEEEeceEEEEEeeCCceEEEEEecCCCeeechhhhcCCCeeeEEEEccceEEEEe
Q 006573 399 MKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQVVGEAKTGEICGEIGVLCYRPQLFTVRTKRLSQLLRL 476 (640)
Q Consensus 399 ~~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~a~~~~~v~~i 476 (640)
+....++||...-..--...++++|++|.+.+.. +|+ ...+.+||.+=.- .+.+ ...++.+++.++.+
T Consensus 36 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~--~~~---~~~l~~Gd~~~ip---~~~~--H~~~~~~~~~~l~v 103 (116)
T 2pfw_A 36 AVKIWFDKGAEGYVHAHRHSQVSYVVEGEFHVNV--DGV---IKVLTAGDSFFVP---PHVD--HGAVCPTGGILIDT 103 (116)
T ss_dssp EEEEEECTTEEEEEECCSSEEEEEEEEECEEEEE--TTE---EEEECTTCEEEEC---TTCC--EEEEESSCEEEEEE
T ss_pred EEEEEECCCCcCCcEECCcceEEEEEeeEEEEEE--CCE---EEEeCCCCEEEEC---cCCc--eeeEeCCCcEEEEE
Confidence 3445677887654444456789999999998876 443 3578999975211 2333 34555667777665
No 206
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=59.24 E-value=37 Score=25.98 Aligned_cols=69 Identities=13% Similarity=0.057 Sum_probs=41.5
Q ss_pred ccccccCCCeEEEeCCC-CCeEEEEEeceEEEEEeeCCceEEEEEecCCCeeechhhhcCCCeeeEEEEccceEEEEe
Q 006573 400 KAEYFPPKEDVILQNEA-PTDFYILVTGAVDLLVLKNGVEQVVGEAKTGEICGEIGVLCYRPQLFTVRTKRLSQLLRL 476 (640)
Q Consensus 400 ~~~~~~~ge~i~~~g~~-~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~a~~~~~v~~i 476 (640)
....++||..+-..--. .+++++|++|.+.+.. +|+ ...+.+||++=- -.+.+........+++.++.+
T Consensus 31 ~~~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~~--~~~---~~~l~~Gd~~~i---p~~~~H~~~~~~~~~~~~~~v 100 (105)
T 1v70_A 31 DLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRV--GEE---EALLAPGMAAFA---PAGAPHGVRNESASPALLLVV 100 (105)
T ss_dssp EEEEECTTCEEEEECCSSCEEEEEEEESCEEEEE--TTE---EEEECTTCEEEE---CTTSCEEEECCSSSCEEEEEE
T ss_pred EEEEECCCCcCCccCCCCCcEEEEEEeCEEEEEE--CCE---EEEeCCCCEEEE---CCCCcEEeEeCCCCCEEEEEE
Confidence 34567788776544334 4679999999998876 343 357899997631 124444333333345655544
No 207
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=57.21 E-value=21 Score=31.13 Aligned_cols=58 Identities=17% Similarity=0.166 Sum_probs=38.2
Q ss_pred CCCeEEEEEeceEEEEEeeCCceEEEEEecCCCeeechhhhcCCCeeeEEEEcc-ceEEEEeeHH
Q 006573 416 APTDFYILVTGAVDLLVLKNGVEQVVGEAKTGEICGEIGVLCYRPQLFTVRTKR-LSQLLRLNRT 479 (640)
Q Consensus 416 ~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~a~~-~~~v~~i~~~ 479 (640)
+.++++++++|.+.+...++|+ ..-..+++||+|=-- .+.+. +-++.+ +|..+.+.+.
T Consensus 54 ~~dE~FyvlkG~m~i~v~d~g~-~~~v~l~eGE~f~lP---~gvpH--~P~r~~~e~~~lviE~~ 112 (174)
T 1yfu_A 54 PLEEFFYQLRGNAYLNLWVDGR-RERADLKEGDIFLLP---PHVRH--SPQRPEAGSACLVIERQ 112 (174)
T ss_dssp SSCEEEEEEESCEEEEEEETTE-EEEEEECTTCEEEEC---TTCCE--EEEBCCTTCEEEEEEEC
T ss_pred CCceEEEEEeeEEEEEEEcCCc-eeeEEECCCCEEEeC---CCCCc--CccccCCCCEEEEEEeC
Confidence 5788999999999997765553 234589999988321 23333 334455 6666666553
No 208
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=53.76 E-value=34 Score=29.67 Aligned_cols=44 Identities=11% Similarity=0.124 Sum_probs=30.0
Q ss_pred ccccCCCeEEEeCCCCCeEEEEEeceEEEEEeeCCceEEEEEecCCCee
Q 006573 402 EYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQVVGEAKTGEIC 450 (640)
Q Consensus 402 ~~~~~ge~i~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~f 450 (640)
..+.||...-..--...++++|++|.+++.. +|+ ...+.+||++
T Consensus 58 ~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~v--~g~---~~~l~~GD~i 101 (166)
T 3jzv_A 58 FEVGPGGHSTLERHQHAHGVMILKGRGHAMV--GRA---VSAVAPYDLV 101 (166)
T ss_dssp EEEEEEEECCCBBCSSCEEEEEEEECEEEEE--TTE---EEEECTTCEE
T ss_pred EEECCCCccCceeCCCcEEEEEEeCEEEEEE--CCE---EEEeCCCCEE
Confidence 3456665543333345679999999999876 443 4588999976
No 209
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A
Probab=53.35 E-value=44 Score=31.56 Aligned_cols=63 Identities=19% Similarity=0.120 Sum_probs=41.4
Q ss_pred eEEEeCCCCCeEEEEEeceEEEEEeeCCceEEEEEecCCCeeechhhhcCCCeeeEEEEccceEEEEeeH
Q 006573 409 DVILQNEAPTDFYILVTGAVDLLVLKNGVEQVVGEAKTGEICGEIGVLCYRPQLFTVRTKRLSQLLRLNR 478 (640)
Q Consensus 409 ~i~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~a~~~~~v~~i~~ 478 (640)
..++ -+..+++|++++|.+.+-..++|+ ..-..+++|++|=-- .+.| .+=++.++|..+.|.+
T Consensus 44 ~d~H-~~~~dE~FyqlkG~m~l~~~d~g~-~~~V~i~eGemfllP---~gv~--HsP~r~~et~gLviE~ 106 (286)
T 2qnk_A 44 KDYH-IEEGEEVFYQLEGDMVLRVLEQGK-HRDVVIRQGEIFLLP---ARVP--HSPQRFANTVGLVVER 106 (286)
T ss_dssp CCEE-ECSSCEEEEEEESCEEEEEEETTE-EEEEEECTTEEEEEC---TTCC--EEEEECTTCEEEEEEE
T ss_pred ccCc-CCCCCeEEEEEeCeEEEEEEeCCc-eeeEEECCCeEEEeC---CCCC--cCCcccCCeEEEEEee
Confidence 4555 566789999999999997766564 233588999887322 1233 2333466777777764
No 210
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=53.10 E-value=11 Score=37.66 Aligned_cols=21 Identities=14% Similarity=0.120 Sum_probs=13.2
Q ss_pred cchhhhhHHHHHHHHHHHHHH
Q 006573 165 QSYGLFNMLRLWRLRRVSALF 185 (640)
Q Consensus 165 ~~~~~l~~lrllrl~r~~~~~ 185 (640)
+.++++|++|++|..+..+.+
T Consensus 98 r~lr~~R~lrl~r~~~~~~~l 118 (355)
T 3beh_A 98 SLYCAVWLLKPLRDSTFFPVL 118 (355)
T ss_dssp GGGGGGGGSHHHHTCSSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 556777777777765544433
No 211
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=52.11 E-value=76 Score=27.34 Aligned_cols=69 Identities=10% Similarity=0.030 Sum_probs=42.3
Q ss_pred ccccccCCCeEEEeCCCCCeEEEEEeceEEEEEeeCCceEEEEEecCCCeeechhhhcCCCeeeEEEE-ccceEEEEe
Q 006573 400 KAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQVVGEAKTGEICGEIGVLCYRPQLFTVRT-KRLSQLLRL 476 (640)
Q Consensus 400 ~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~a-~~~~~v~~i 476 (640)
....++||...-..--...++++|++|.+.+.. +|+ ...+.+||++=- -.+.+....... .+++.++.+
T Consensus 59 ~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~i--~~~---~~~l~~Gd~i~i---p~~~~H~~~n~~~~~~~~~l~i 128 (167)
T 3ibm_A 59 RYFEVEPGGYTTLERHEHTHVVMVVRGHAEVVL--DDR---VEPLTPLDCVYI---APHAWHQIHATGANEPLGFLCI 128 (167)
T ss_dssp EEEEECTTCBCCCBBCSSCEEEEEEESEEEEEE--TTE---EEEECTTCEEEE---CTTCCEEEEEESSSCCEEEEEE
T ss_pred EEEEECCCCCCCCccCCCcEEEEEEeCEEEEEE--CCE---EEEECCCCEEEE---CCCCcEEEEeCCCCCCEEEEEE
Confidence 344566776554333457889999999998876 443 457899997632 234454444444 445555554
No 212
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=51.80 E-value=18 Score=31.70 Aligned_cols=68 Identities=15% Similarity=0.242 Sum_probs=39.5
Q ss_pred cccccCCCeEEEeCCCCCeEEEEEeceEEEEEeeCCceEEEEEecCCCeeechhhhcCCCeeeEEEEccceEEEEe
Q 006573 401 AEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQVVGEAKTGEICGEIGVLCYRPQLFTVRTKRLSQLLRL 476 (640)
Q Consensus 401 ~~~~~~ge~i~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~a~~~~~v~~i 476 (640)
...++||...-..-....++.+|++|++++... +|+ ...+++||.+ . -.+.+..+.-...+.++++.+
T Consensus 83 ~v~l~PG~~~~~H~H~~eE~~~VLeGel~l~ld-~ge---~~~L~~GDsi-~---~~g~~H~~~N~g~~~ar~l~V 150 (172)
T 3es1_A 83 VVDMLPGKESPMHRTNSIDYGIVLEGEIELELD-DGA---KRTVRQGGII-V---QRGTNHLWRNTTDKPCRIAFI 150 (172)
T ss_dssp EEEECTTCBCCCBCCSEEEEEEEEESCEEEECG-GGC---EEEECTTCEE-E---ECSCCBEEECCSSSCEEEEEE
T ss_pred EEEECCCCCCCCeecCceEEEEEEeCEEEEEEC-CCe---EEEECCCCEE-E---eCCCcEEEEeCCCCCEEEEEE
Confidence 344566653222222345688999999999763 133 3478999997 2 235555444444455655543
No 213
>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}
Probab=51.65 E-value=83 Score=26.23 Aligned_cols=64 Identities=11% Similarity=0.187 Sum_probs=41.3
Q ss_pred EEeCCCCCeEEEEEeceEEEEEeeC--C-ceEEEEEecCCCeeechhhhcCCCeeeEEEEccceEEEEeeHH
Q 006573 411 ILQNEAPTDFYILVTGAVDLLVLKN--G-VEQVVGEAKTGEICGEIGVLCYRPQLFTVRTKRLSQLLRLNRT 479 (640)
Q Consensus 411 ~~~g~~~~~ly~I~~G~v~v~~~~~--g-~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~a~~~~~v~~i~~~ 479 (640)
.+.-+..|++|+|++|.+.+...+. + .+.-...+++|+++--- .| -...-.|.+.|.++.+...
T Consensus 44 ~h~H~~tDE~Fivl~G~l~i~~rd~~~~~~~d~~V~l~~Ge~yvVP---kG--veH~p~a~~e~~vLLiEp~ 110 (140)
T 3d0j_A 44 LEIHHSTDEQFILSAGKAILITAEKENDKFNIELTLMEKGKVYNVP---AE--CWFYSITQKDTKMMYVQDS 110 (140)
T ss_dssp EEEESSCCEEEEEEESCEEEEEEEEETTEEEEEEEECCTTCCEEEC---TT--CEEEEEECTTCEEEEEEES
T ss_pred hccCCCCCeEEEEEecEEEEEEecCcCCCCccceEEecCCCEEEeC---CC--ccCcccCCCceEEEEEEeC
Confidence 4556678999999999999876421 1 11224578899876321 12 1334556788888887654
No 214
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=51.60 E-value=22 Score=31.25 Aligned_cols=52 Identities=8% Similarity=0.095 Sum_probs=36.8
Q ss_pred cccccccCCCeEEEeCCCCCeEEEEEeceEEEEEeeCCceEEEEEecCCCeee
Q 006573 399 MKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQVVGEAKTGEICG 451 (640)
Q Consensus 399 ~~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fG 451 (640)
+....+.||......-..++++++|++|++++.....+.. ....+++||++=
T Consensus 43 ~~~~~l~pg~~~~pHh~~a~E~~yVl~G~~~v~v~~~~~~-~~~~l~~GDv~~ 94 (178)
T 1dgw_A 43 VLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGR-DTYKLDQGDAIK 94 (178)
T ss_dssp EEEEEECTTEEEEEEEESSEEEEEEEESEEEEEEEETTEE-EEEEEETTEEEE
T ss_pred EEEEEecCCcEecCcCCCCCEEEEEEeEEEEEEEEeCCCc-EEEEECCCCEEE
Confidence 4456788887765554456899999999998876433222 355899999863
No 215
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=51.22 E-value=48 Score=30.36 Aligned_cols=68 Identities=18% Similarity=0.127 Sum_probs=47.2
Q ss_pred cccccccCCCeEEEeCCCCCeEEEEEeceEEEEEeeCCceEEEEEecCCCeeechhhhcCCCeeeEEEE-ccceEEEEe
Q 006573 399 MKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQVVGEAKTGEICGEIGVLCYRPQLFTVRT-KRLSQLLRL 476 (640)
Q Consensus 399 ~~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~a-~~~~~v~~i 476 (640)
+....++||+.+-..-.+.+.++++++|.+++.. +|+ ...+.+||.+=- -.+.+ ..+++ .++++++.+
T Consensus 155 ~~~~~~~~G~~~~~H~H~~~e~~~Vl~G~~~~~i--~g~---~~~l~~Gd~i~i---p~~~~--H~~~~~~~~~~~ll~ 223 (227)
T 3rns_A 155 MTIMSFWKGESLDPHKAPGDALVTVLDGEGKYYV--DGK---PFIVKKGESAVL---PANIP--HAVEAETENFKMLLI 223 (227)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEEEEEEEE--TTE---EEEEETTEEEEE---CTTSC--EEEECCSSCEEEEEE
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEeEEEEEEE--CCE---EEEECCCCEEEE---CCCCc--EEEEeCCCCEEEEEE
Confidence 4456789999877666667789999999999876 443 357889987531 12333 45566 777776543
No 216
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=50.85 E-value=35 Score=29.22 Aligned_cols=44 Identities=14% Similarity=0.159 Sum_probs=29.6
Q ss_pred ccccCCCeEEEeCCCCCeEEEEEeceEEEEEeeCCceEEEEEecCCCee
Q 006573 402 EYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQVVGEAKTGEIC 450 (640)
Q Consensus 402 ~~~~~ge~i~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~f 450 (640)
..+.||...-..--...++++|++|.+++.. +|+ ...+.+||++
T Consensus 49 ~~l~pG~~~~~H~H~~~E~~~Vl~G~~~v~v--~g~---~~~l~~Gd~i 92 (156)
T 3kgz_A 49 FEVDEGGYSTLERHAHVHAVMIHRGHGQCLV--GET---ISDVAQGDLV 92 (156)
T ss_dssp EEEEEEEECCCBBCSSCEEEEEEEEEEEEEE--TTE---EEEEETTCEE
T ss_pred EEECCCCccCceeCCCcEEEEEEeCEEEEEE--CCE---EEEeCCCCEE
Confidence 3455665443333345679999999999876 443 4578899976
No 217
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=49.56 E-value=53 Score=25.64 Aligned_cols=45 Identities=11% Similarity=0.028 Sum_probs=32.1
Q ss_pred cccccCCCeEEEeCCCCCeEEEEEeceEEEEEeeCCceEEEEEecCCCeee
Q 006573 401 AEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQVVGEAKTGEICG 451 (640)
Q Consensus 401 ~~~~~~ge~i~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fG 451 (640)
...+.||+.-.. -..+++++|++|.+.+... +|+ ...+.+||.+=
T Consensus 35 ~~~~~pg~~~~h--H~~~E~~~Vl~G~~~~~i~-~g~---~~~l~~GD~i~ 79 (101)
T 1o5u_A 35 IWEKEVSEFDWY--YDTNETCYILEGKVEVTTE-DGK---KYVIEKGDLVT 79 (101)
T ss_dssp EEEECSEEEEEE--CSSCEEEEEEEEEEEEEET-TCC---EEEEETTCEEE
T ss_pred EEEeCCCccccc--CCceEEEEEEeCEEEEEEC-CCC---EEEECCCCEEE
Confidence 456677775443 4468899999999998762 143 34789999863
No 218
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=47.99 E-value=31 Score=31.63 Aligned_cols=19 Identities=21% Similarity=-0.104 Sum_probs=10.5
Q ss_pred HHHHHHhhhhhhcccccCC
Q 006573 251 YVTSMYWSITTLTTVGYGD 269 (640)
Q Consensus 251 y~~s~yw~~~t~ttvGygd 269 (640)
..+++..|+.|+..+--|+
T Consensus 162 ~F~~~~~a~~~lf~~~t~~ 180 (229)
T 4dxw_A 162 RWGDLGISLITLFQVLTLS 180 (229)
T ss_dssp TTSSHHHHHHHHHHHHTTS
T ss_pred cccCHHHHHHHHHHHHccC
Confidence 4456666666665544443
No 219
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=46.97 E-value=63 Score=25.08 Aligned_cols=69 Identities=10% Similarity=0.108 Sum_probs=41.4
Q ss_pred ccccccCCCeEEEe--CCC-CCeEEEEEeceEEEEEeeCCceEEEEEecCCCeeechhhhcCCCeeeEEEEccceEEEEe
Q 006573 400 KAEYFPPKEDVILQ--NEA-PTDFYILVTGAVDLLVLKNGVEQVVGEAKTGEICGEIGVLCYRPQLFTVRTKRLSQLLRL 476 (640)
Q Consensus 400 ~~~~~~~ge~i~~~--g~~-~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~a~~~~~v~~i 476 (640)
....++||..+-.. --. ..++++|++|.+.+.. +++ ...+.+||.+=-- .+.+........+++.++.+
T Consensus 24 ~~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~--~~~---~~~l~~Gd~~~i~---~~~~H~~~~~~~~~~~~~~v 95 (113)
T 2gu9_A 24 AEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIV--DGH---TQALQAGSLIAIE---RGQAHEIRNTGDTPLKTVNF 95 (113)
T ss_dssp EEEEECTTCEEECCCSSSCCCEEEEEEEECCEEEEE--TTE---EEEECTTEEEEEC---TTCCEEEECCSSSCEEEEEE
T ss_pred EEEEECCCCccCCcccccCCCcEEEEEEeCEEEEEE--CCE---EEEeCCCCEEEEC---CCCcEEeEcCCCCCEEEEEE
Confidence 34567888766543 334 6789999999998876 443 3478899876321 23443333323344555544
No 220
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=45.32 E-value=37 Score=27.38 Aligned_cols=77 Identities=10% Similarity=0.133 Sum_probs=47.4
Q ss_pred cccccccCCCeEEEeCCCCCeEEEEEeceEEEEEeeCCceEEEEEecCCCeeechhhhcCCCeeeEEEEccc-eEEEEe-
Q 006573 399 MKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQVVGEAKTGEICGEIGVLCYRPQLFTVRTKRL-SQLLRL- 476 (640)
Q Consensus 399 ~~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~a~~~-~~v~~i- 476 (640)
+....++||..+-..--....+++|++|.+.+.. +|+ ...+.+||.+=. -.+.+. ..++.++ +.++.+
T Consensus 43 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~--~~~---~~~l~~Gd~~~i---p~~~~H--~~~~~~~~~~~l~v~ 112 (126)
T 4e2g_A 43 LNWVRIEPNTEMPAHEHPHEQAGVMLEGTLELTI--GEE---TRVLRPGMAYTI---PGGVRH--RARTFEDGCLVLDIF 112 (126)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEECEEEEE--TTE---EEEECTTEEEEE---CTTCCE--EEECCTTCEEEEEEE
T ss_pred EEEEEECCCCcCCCccCCCceEEEEEEeEEEEEE--CCE---EEEeCCCCEEEE---CCCCcE--EeEECCCCEEEEEEE
Confidence 3456678888776555556889999999999876 443 358889987621 123333 3444444 655433
Q ss_pred --eHHHHHHHH
Q 006573 477 --NRTTFLNIV 485 (640)
Q Consensus 477 --~~~~f~~ll 485 (640)
+++++.+.+
T Consensus 113 ~p~~~d~~~~~ 123 (126)
T 4e2g_A 113 SPPREDYARMA 123 (126)
T ss_dssp ESCCHHHHHHH
T ss_pred CCCCcchhhhh
Confidence 345555444
No 221
>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A
Probab=44.52 E-value=90 Score=27.81 Aligned_cols=53 Identities=15% Similarity=0.110 Sum_probs=35.2
Q ss_pred cccccccCCCeEEEeC-CCCCeEEEEEeceEEEEEeeCC---ceEEEEEecCCCeee
Q 006573 399 MKAEYFPPKEDVILQN-EAPTDFYILVTGAVDLLVLKNG---VEQVVGEAKTGEICG 451 (640)
Q Consensus 399 ~~~~~~~~ge~i~~~g-~~~~~ly~I~~G~v~v~~~~~g---~~~~~~~l~~G~~fG 451 (640)
+....+.||...-..- ...+++++|++|.+++.....+ .+.....+.+||.+=
T Consensus 74 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~v~~~~~~~~~~~~~~~~l~~GD~~~ 130 (201)
T 1fi2_A 74 MNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVRAGETFV 130 (201)
T ss_dssp EEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECCGGGTTCEEEEEEETTCEEE
T ss_pred EEEEEECCCCCCCCeECCCCCEEEEEEeCEEEEEEEcCCCCCCeEEEEEECCCCEEE
Confidence 3445678887654433 3357999999999998663221 333356899999873
No 222
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=43.39 E-value=46 Score=27.33 Aligned_cols=45 Identities=24% Similarity=0.411 Sum_probs=31.4
Q ss_pred cccccCCCeEEEeCCC-CCeEEEEEeceEEEEEeeCCceEEEEEecCCCee
Q 006573 401 AEYFPPKEDVILQNEA-PTDFYILVTGAVDLLVLKNGVEQVVGEAKTGEIC 450 (640)
Q Consensus 401 ~~~~~~ge~i~~~g~~-~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~f 450 (640)
...++||..+-..--. ..++++|++|.+.+.. +|+ ...+.+||++
T Consensus 61 ~~~~~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i--~~~---~~~l~~Gd~i 106 (133)
T 1o4t_A 61 RMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHD--NGK---DVPIKAGDVC 106 (133)
T ss_dssp EEEECTTCEEEEEECCSEEEEEEEEESEEEEEE--TTE---EEEEETTEEE
T ss_pred EEEECCCCccCceECCCccEEEEEEeCEEEEEE--CCE---EEEeCCCcEE
Confidence 4567788765433333 4689999999998876 443 3478899976
No 223
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=39.60 E-value=23 Score=29.36 Aligned_cols=20 Identities=25% Similarity=0.321 Sum_probs=7.5
Q ss_pred hhhhHHHHHHHHHHHHHHHH
Q 006573 168 GLFNMLRLWRLRRVSALFSR 187 (640)
Q Consensus 168 ~~l~~lrllrl~r~~~~~~~ 187 (640)
+++|++|++|+.|..+.++.
T Consensus 98 RllRv~Rvlkl~r~~~~l~~ 117 (132)
T 1ors_C 98 RLVRLLRFLRILLIISRGSK 117 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHH
Confidence 33333333333333333333
No 224
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=39.39 E-value=53 Score=26.58 Aligned_cols=68 Identities=12% Similarity=-0.043 Sum_probs=39.9
Q ss_pred cccccCCCeEEEeCCCCCeEEEEEeceEEEEEeeCCceEEEEEecCCCeeechhhhcCCCeeeEEEEccceEEEEe
Q 006573 401 AEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQVVGEAKTGEICGEIGVLCYRPQLFTVRTKRLSQLLRL 476 (640)
Q Consensus 401 ~~~~~~ge~i~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~a~~~~~v~~i 476 (640)
...++||...-..--...++++|++|.+.+.. +++ ...+.+||++=.- .+.+........+++.++.+
T Consensus 52 ~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i--~~~---~~~l~~Gd~i~ip---~g~~H~~~~~~~~~~~~l~v 119 (126)
T 1vj2_A 52 LFTVEPGGLIDRHSHPWEHEIFVLKGKLTVLK--EQG---EETVEEGFYIFVE---PNEIHGFRNDTDSEVEFLCL 119 (126)
T ss_dssp EEEEEEEEEEEEECCSSCEEEEEEESEEEEEC--SSC---EEEEETTEEEEEC---TTCCEEEECCSSSCEEEEEE
T ss_pred EEEECCCCcCCceeCCCcEEEEEEEeEEEEEE--CCE---EEEECCCCEEEEC---CCCcEEeEeCCCCCEEEEEE
Confidence 34566666554444446789999999998875 343 2478899876321 24444333333345555544
No 225
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=37.99 E-value=78 Score=26.50 Aligned_cols=70 Identities=10% Similarity=0.066 Sum_probs=41.9
Q ss_pred cccccCCCeEEEeCCCCCeEEEEEeceEEEEEeeCCceEEEEEecCCCeeechhhhcCCCeeeEEEEccceEEEEee
Q 006573 401 AEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQVVGEAKTGEICGEIGVLCYRPQLFTVRTKRLSQLLRLN 477 (640)
Q Consensus 401 ~~~~~~ge~i~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~a~~~~~v~~i~ 477 (640)
...++||..+-..--....+++|++|.+.+.. +++. ...+.+||++= +-.+.+........+.+.++.+.
T Consensus 52 ~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~--~~~~--~~~l~~Gd~i~---ip~~~~H~~~n~~~~~~~~l~v~ 121 (147)
T 2f4p_A 52 DVVFEPGARTHWHSHPGGQILIVTRGKGFYQE--RGKP--ARILKKGDVVE---IPPNVVHWHGAAPDEELVHIGIS 121 (147)
T ss_dssp EEEECTTCEECSEECTTCEEEEEEEEEEEEEE--TTSC--CEEEETTCEEE---ECTTCCEEEEEBTTBCEEEEEEE
T ss_pred EEEECCCCccCceECCCceEEEEEeCEEEEEE--CCEE--EEEECCCCEEE---ECCCCcEEeEeCCCCCEEEEEEE
Confidence 44567776553333345789999999998876 3432 14788999773 22344554444444555555543
No 226
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=37.65 E-value=32 Score=26.90 Aligned_cols=66 Identities=8% Similarity=-0.055 Sum_probs=38.9
Q ss_pred cCCCeEEEeCCCCCeEEEEEeceEEEEEeeCC-ceEEEEEecCCCeeechhhhcCCCeeeEEEEccceEEEEeeHHH
Q 006573 405 PPKEDVILQNEAPTDFYILVTGAVDLLVLKNG-VEQVVGEAKTGEICGEIGVLCYRPQLFTVRTKRLSQLLRLNRTT 480 (640)
Q Consensus 405 ~~ge~i~~~g~~~~~ly~I~~G~v~v~~~~~g-~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~a~~~~~v~~i~~~~ 480 (640)
.+|+......+..+++++|++|.+.+.. +| + ...+.+||.+=- -.+.+.... +.+++.++.+....
T Consensus 36 ~~g~~~~H~H~~~~E~~~Vl~G~~~~~~--~~~~---~~~l~~Gd~~~i---p~~~~H~~~--~~~~~~~l~i~~~~ 102 (107)
T 2i45_A 36 LLGDYGWHTHGYSDKVLFAVEGDMAVDF--ADGG---SMTIREGEMAVV---PKSVSHRPR--SENGCSLVLIELSD 102 (107)
T ss_dssp EEEECCCBCC--CCEEEEESSSCEEEEE--TTSC---EEEECTTEEEEE---CTTCCEEEE--EEEEEEEEEEECC-
T ss_pred CCCCCcceeCCCCCEEEEEEeCEEEEEE--CCCc---EEEECCCCEEEE---CCCCcEeeE--eCCCeEEEEEECCC
Confidence 4454332333333789999999998876 33 3 347899987631 234444333 34677777776543
No 227
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=37.40 E-value=64 Score=25.85 Aligned_cols=71 Identities=13% Similarity=0.099 Sum_probs=41.3
Q ss_pred cccccccCCCeEEEeCCC-CCeEEEEEeceEEEEEeeCCceEEEEEecCCCeeechhhhcCCCeeeEEEEccceEEEEe
Q 006573 399 MKAEYFPPKEDVILQNEA-PTDFYILVTGAVDLLVLKNGVEQVVGEAKTGEICGEIGVLCYRPQLFTVRTKRLSQLLRL 476 (640)
Q Consensus 399 ~~~~~~~~ge~i~~~g~~-~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~a~~~~~v~~i 476 (640)
+....++||..+-..--. ...+++|++|.+.+... +|+ ...+++||++= +-.+.+........+++.++.+
T Consensus 41 ~~~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~-~~~---~~~l~~Gd~~~---i~~~~~H~~~n~~~~~~~~l~v 112 (125)
T 3h8u_A 41 VVVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQG-NGI---VTHLKAGDIAI---AKPGQVHGAMNSGPEPFIFVSV 112 (125)
T ss_dssp EEEEEECTTCEECCC-CTTCEEEEEEEECEEEEECS-TTC---EEEEETTEEEE---ECTTCCCEEEECSSSCEEEEEE
T ss_pred EEEEEECCCCcCCcccCCCCeEEEEEEEeEEEEEEC-CCe---EEEeCCCCEEE---ECCCCEEEeEeCCCCCEEEEEE
Confidence 344567788765444344 36789999999988641 343 34788999753 1234444443333455555543
No 228
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=37.39 E-value=54 Score=29.00 Aligned_cols=71 Identities=13% Similarity=0.037 Sum_probs=40.2
Q ss_pred ccccCCCeEE---EeCCCCCeEEEEEeceEEEEEeeCCceEEEEEecCCCeeechhhhcCCCeeeEEE-EccceEEEEe
Q 006573 402 EYFPPKEDVI---LQNEAPTDFYILVTGAVDLLVLKNGVEQVVGEAKTGEICGEIGVLCYRPQLFTVR-TKRLSQLLRL 476 (640)
Q Consensus 402 ~~~~~ge~i~---~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~-a~~~~~v~~i 476 (640)
..++||...- ....+.+++++|++|.+++...++|. .....+.+||.+-.- .+.++.+... ..++++++.+
T Consensus 122 ~~~~pg~~~~~~~~h~h~~~E~~~Vl~G~~~~~~~~~~~-~~~~~l~~GD~~~~~---~~~~H~~~n~~~~~~~~~l~v 196 (198)
T 2bnm_A 122 VDVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKWGDKEN-PKEALLPTGASMFVE---EHVPHAFTAAKGTGSAKLIAV 196 (198)
T ss_dssp EEECCCCGGGCCCCCCCSSCEEEEEEESCEEEEESCTTS-CEEEEECTTCEEEEC---TTCCEEEEESTTSCCEEEEEE
T ss_pred EEEcCCCCCcccccccCCCeEEEEEEeeeEEEEECCcCC-cccEEECCCCEEEeC---CCCceEEEecCCCCCeEEEEE
Confidence 3456665443 12234468999999999998733211 124589999987322 2444433322 2256666554
No 229
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=37.36 E-value=42 Score=27.79 Aligned_cols=64 Identities=13% Similarity=-0.005 Sum_probs=38.7
Q ss_pred cccccCCCeEEEeCCCCCeEEEEEeceEEEEEeeCCceEEEEEecCCCeeechhhhcCCCeeeEEEEccceEEEEe
Q 006573 401 AEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQVVGEAKTGEICGEIGVLCYRPQLFTVRTKRLSQLLRL 476 (640)
Q Consensus 401 ~~~~~~ge~i~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~a~~~~~v~~i 476 (640)
...+.||+.-. ....+++++|++|.+.+.. +|+ ...+++||.+--- .+.+.... ..++++++.+
T Consensus 61 ~~~~~pG~~~~--h~~~~E~~~VLeG~~~l~~--~g~---~~~l~~GD~i~~p---~g~~h~~~--~~~~~~~l~v 124 (133)
T 2pyt_A 61 FMQWDNAFFPW--TLNYDEIDMVLEGELHVRH--EGE---TMIAKAGDVMFIP---KGSSIEFG--TPTSVRFLYV 124 (133)
T ss_dssp EEEEEEEEEEE--ECSSEEEEEEEEEEEEEEE--TTE---EEEEETTCEEEEC---TTCEEEEE--EEEEEEEEEE
T ss_pred EEEECCCCccc--cCCCCEEEEEEECEEEEEE--CCE---EEEECCCcEEEEC---CCCEEEEE--eCCCEEEEEE
Confidence 34567774222 2246889999999999876 454 2389999987422 23333332 3455555443
No 230
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=37.00 E-value=38 Score=25.96 Aligned_cols=48 Identities=19% Similarity=0.172 Sum_probs=29.9
Q ss_pred cccccCCCeEE-EeCCCCCeEEEEEeceEEEEEeeCCceEEEEEecCCCeee
Q 006573 401 AEYFPPKEDVI-LQNEAPTDFYILVTGAVDLLVLKNGVEQVVGEAKTGEICG 451 (640)
Q Consensus 401 ~~~~~~ge~i~-~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fG 451 (640)
...++||...- ..-+..+.+++|++|.+++... +|. ....+.+||.+=
T Consensus 22 ~~~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~-~g~--~~~~l~~Gd~~~ 70 (97)
T 2fqp_A 22 EWRFPPGGETGWHRHSMDYVVVPMTTGPLLLETP-EGS--VTSQLTRGVSYT 70 (97)
T ss_dssp EEEECTTCBCCSEECCSCEEEEESSCEEEEEEET-TEE--EEEEECTTCCEE
T ss_pred EEEECCCCCCCCEECCCCcEEEEEeecEEEEEeC-CCC--EEEEEcCCCEEE
Confidence 34567776542 2222234599999999998762 221 234789999873
No 231
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=36.73 E-value=75 Score=27.20 Aligned_cols=47 Identities=13% Similarity=0.151 Sum_probs=31.8
Q ss_pred ccccccCCCeE--EEeCCCCCeEEEEEeceEEEEEeeCCceEEEEEecCCCeee
Q 006573 400 KAEYFPPKEDV--ILQNEAPTDFYILVTGAVDLLVLKNGVEQVVGEAKTGEICG 451 (640)
Q Consensus 400 ~~~~~~~ge~i--~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fG 451 (640)
....++||... .+..+..+++++|++|.+++.. +++ ...+.+||.+-
T Consensus 46 ~~~~l~pG~~~~~~H~H~~~eE~~~Vl~G~~~~~~--~~~---~~~l~~GD~i~ 94 (163)
T 3i7d_A 46 NLVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLVD--DQG---EHPMVPGDCAA 94 (163)
T ss_dssp EEEEECTTCBSSSSEEESSCCEEEEEEESCEEEEE--TTE---EEEECTTCEEE
T ss_pred EEEEECCCCcCCCCccCCCCcEEEEEEECEEEEEE--CCE---EEEeCCCCEEE
Confidence 34566777643 2333344789999999999876 443 35889999763
No 232
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=36.17 E-value=95 Score=27.21 Aligned_cols=44 Identities=9% Similarity=0.141 Sum_probs=30.8
Q ss_pred ccccCCCeEEE--eCCCCCeEEEEEeceEEEEEeeCCceEEEEEecCCCee
Q 006573 402 EYFPPKEDVIL--QNEAPTDFYILVTGAVDLLVLKNGVEQVVGEAKTGEIC 450 (640)
Q Consensus 402 ~~~~~ge~i~~--~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~f 450 (640)
..++||..... .....+++++|++|.+.+.. +|+ ...+.+||.+
T Consensus 109 ~~~~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~~--~~~---~~~l~~GD~i 154 (192)
T 1y9q_A 109 ITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFF--DEQ---WHELQQGEHI 154 (192)
T ss_dssp EEECTTCEEEECCCSTTCEEEEEEEESCEEEEE--TTE---EEEECTTCEE
T ss_pred EEECCCCCccCCCCCCCCEEEEEEEEeEEEEEE--CCE---EEEeCCCCEE
Confidence 45677765542 22334689999999999876 443 3489999976
No 233
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}
Probab=35.65 E-value=52 Score=29.87 Aligned_cols=44 Identities=18% Similarity=0.272 Sum_probs=29.9
Q ss_pred cccCCCeEEEeCCCCCeEEEEEeceEEEEEeeCCceEEEEEecCCCee
Q 006573 403 YFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQVVGEAKTGEIC 450 (640)
Q Consensus 403 ~~~~ge~i~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~f 450 (640)
.+.||...=.-..+.+++|+|++|.+++...+ |. ...+++||.+
T Consensus 138 ~l~PG~~yP~HsHp~EEiy~VLsG~~e~~v~~-g~---~~~l~pGd~v 181 (217)
T 4b29_A 138 YWGPGLDYGWHEHLPEELYSVVSGRALFHLRN-AP---DLMLEPGQTR 181 (217)
T ss_dssp EECSSCEEEEEECSSEEEEEEEEECEEEEETT-SC---CEEECTTCEE
T ss_pred EECCCCcCCCCCCCCceEEEEEeCCEEEEECC-CC---EEecCCCCEE
Confidence 35555544334456789999999999887632 32 3478899876
No 234
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}
Probab=35.39 E-value=75 Score=26.98 Aligned_cols=46 Identities=9% Similarity=0.096 Sum_probs=31.4
Q ss_pred ccccccCCCe-E-EEeCCCCCeEEEEEeceEEEEEeeCCceEEEEEecCCCee
Q 006573 400 KAEYFPPKED-V-ILQNEAPTDFYILVTGAVDLLVLKNGVEQVVGEAKTGEIC 450 (640)
Q Consensus 400 ~~~~~~~ge~-i-~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~f 450 (640)
....++||.. . .+.-...+++++|++|.+.+.. +|+ ...+.+||++
T Consensus 49 ~~~~l~pg~~~~~~H~H~~~~E~~~Vl~G~~~~~~--~~~---~~~l~~Gd~i 96 (162)
T 3l2h_A 49 HLIQIEPGKESTEYHLHHYEEEAVYVLSGKGTLTM--END---QYPIAPGDFV 96 (162)
T ss_dssp EEEEECTTCBSSSSBEESSCCEEEEEEESCEEEEE--TTE---EEEECTTCEE
T ss_pred EEEEECCCCcCCCCccCCCCCEEEEEEEEEEEEEE--CCE---EEEeCCCCEE
Confidence 3456677763 2 2222356789999999999876 443 3578999986
No 235
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=34.80 E-value=95 Score=23.46 Aligned_cols=51 Identities=10% Similarity=0.133 Sum_probs=33.0
Q ss_pred CCeEEEEEeceEEEEEeeCCceEEEEEecCCCeeechhhhcCCCeeeEEEEccceEEEEee
Q 006573 417 PTDFYILVTGAVDLLVLKNGVEQVVGEAKTGEICGEIGVLCYRPQLFTVRTKRLSQLLRLN 477 (640)
Q Consensus 417 ~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~a~~~~~v~~i~ 477 (640)
...++++++|.+.+.. +++ ...+.+||.+=- -.+.+.. ..+.+++.++.++
T Consensus 50 ~~e~~~v~~G~~~~~~--~~~---~~~l~~Gd~~~i---p~~~~H~--~~~~~~~~~l~i~ 100 (102)
T 3d82_A 50 TDEVFIVMEGTLQIAF--RDQ---NITLQAGEMYVI---PKGVEHK--PMAKEECKIMIIE 100 (102)
T ss_dssp CCEEEEEEESEEEEEC--SSC---EEEEETTEEEEE---CTTCCBE--EEEEEEEEEEEEE
T ss_pred CcEEEEEEeCEEEEEE--CCE---EEEEcCCCEEEE---CCCCeEe--eEcCCCCEEEEEE
Confidence 3789999999998865 343 346789987521 1244443 3344678877765
No 236
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=34.21 E-value=1.8e+02 Score=23.16 Aligned_cols=78 Identities=9% Similarity=0.120 Sum_probs=44.1
Q ss_pred ccccCCCeEEEeCCCCCeEEEEEeceEEEEEeeCCceEEEEEecCCCeeechhhhcCCCeeeEEEEccceEE--EEeeHH
Q 006573 402 EYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQVVGEAKTGEICGEIGVLCYRPQLFTVRTKRLSQL--LRLNRT 479 (640)
Q Consensus 402 ~~~~~ge~i~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~a~~~~~v--~~i~~~ 479 (640)
..++||...-..--...++++|++|...+.. +|+ ...+.+||++=-- .+.+........++++. +.++.+
T Consensus 39 ~~~~pg~~~~~H~H~~~Ei~~v~~G~~~~~i--~~~---~~~l~~Gd~~~i~---~~~~H~~~~~~~~~~~~~~i~f~~~ 110 (128)
T 4i4a_A 39 CIVRPETKSFRHSHNEYELFIVIQGNAIIRI--NDE---DFPVTKGDLIIIP---LDSEHHVINNNQEDFHFYTIWWDKE 110 (128)
T ss_dssp EEECTTEECCCBCCSSEEEEEEEESEEEEEE--TTE---EEEEETTCEEEEC---TTCCEEEEECSSSCEEEEEEEECHH
T ss_pred EEECCCCccCCEecCCeEEEEEEeCEEEEEE--CCE---EEEECCCcEEEEC---CCCcEEeEeCCCCCEEEEEEEECHH
Confidence 4455665332222346679999999998876 443 4578899876321 24444333333444444 445665
Q ss_pred HHHHHHHh
Q 006573 480 TFLNIVQA 487 (640)
Q Consensus 480 ~f~~ll~~ 487 (640)
-+..++.+
T Consensus 111 ~~~~~~~~ 118 (128)
T 4i4a_A 111 STLNFLTR 118 (128)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55554443
No 237
>2q1z_B Anti-sigma factor CHRR, transcriptional activator; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_B
Probab=33.69 E-value=55 Score=29.19 Aligned_cols=65 Identities=12% Similarity=0.005 Sum_probs=44.5
Q ss_pred ccccccccCCCeEEEeCCCCCeEEEEEeceEEEEEeeCCceEEEEEecCCCeeechhhhcCCCeeeEEEE--ccceEEEE
Q 006573 398 EMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQVVGEAKTGEICGEIGVLCYRPQLFTVRT--KRLSQLLR 475 (640)
Q Consensus 398 ~~~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~a--~~~~~v~~ 475 (640)
.+....+.||..+-...-.+.++.+|++|..+ +.+ ..+.+||++=.- .+.+ .+..+ .+.|.++.
T Consensus 126 ~v~l~~~~pG~~~p~H~H~g~E~~~VL~G~f~---de~------~~~~~Gd~~~~p---~g~~--H~p~a~~~~gc~~l~ 191 (195)
T 2q1z_B 126 IARLLWIPGGQAVPDHGHRGLELTLVLQGAFR---DET------DRFGAGDIEIAD---QELE--HTPVAERGLDCICLA 191 (195)
T ss_dssp EEEEEEECTTCBCCCCCCSSCEEEEEEESEEE---CSS------SEEETTCEEEEC---SSCC--CCCEECSSSCEEEEE
T ss_pred EEEEEEECCCCCCCCcCCCCeEEEEEEEEEEE---CCc------EEECCCeEEEeC---cCCc--cCCEeCCCCCEEEEE
Confidence 34567789999888888888999999999864 222 268899886322 1222 33444 67888876
Q ss_pred e
Q 006573 476 L 476 (640)
Q Consensus 476 i 476 (640)
.
T Consensus 192 ~ 192 (195)
T 2q1z_B 192 A 192 (195)
T ss_dssp E
T ss_pred E
Confidence 5
No 238
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=33.48 E-value=1.2e+02 Score=27.94 Aligned_cols=70 Identities=13% Similarity=0.077 Sum_probs=45.0
Q ss_pred ccccccccCCCeEEE-eCCCCCeEEEEEeceEEEEEeeCCceEEEEEecCCCeeechhhhcCCCeeeEEEEccceEEEE
Q 006573 398 EMKAEYFPPKEDVIL-QNEAPTDFYILVTGAVDLLVLKNGVEQVVGEAKTGEICGEIGVLCYRPQLFTVRTKRLSQLLR 475 (640)
Q Consensus 398 ~~~~~~~~~ge~i~~-~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~a~~~~~v~~ 475 (640)
.+....++||..+-. .-...++.++|++|+..+.. +|+ ...+++||++--- .+.|..+.....++++.+.
T Consensus 166 ~~~~~tl~PG~~~~~~~~h~~ee~~~vLeG~~~~~~--~~~---~~~l~~GD~~~~~---~~~pH~~~n~g~~~~~yl~ 236 (246)
T 1sfn_A 166 MVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKL--EEN---YYPVTAGDIIWMG---AHCPQWYGALGRNWSKYLL 236 (246)
T ss_dssp EEEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEE--TTE---EEEEETTCEEEEC---TTCCEEEEEESSSCEEEEE
T ss_pred EEEEEEECCCCccCcccCCCceEEEEEEECEEEEEE--CCE---EEEcCCCCEEEEC---CCCCEEEEcCCCCCEEEEE
Confidence 345667888876553 33456689999999998876 554 3489999986422 2445544444455565544
No 239
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=33.40 E-value=1.6e+02 Score=29.27 Aligned_cols=75 Identities=9% Similarity=0.033 Sum_probs=46.8
Q ss_pred cccccccCCCeEEEeCCCC-CeEEEEEeceEEEEEe-eCCceEEEEEecCCCeeechhhhcCCCeeeEEEEccceEEEEe
Q 006573 399 MKAEYFPPKEDVILQNEAP-TDFYILVTGAVDLLVL-KNGVEQVVGEAKTGEICGEIGVLCYRPQLFTVRTKRLSQLLRL 476 (640)
Q Consensus 399 ~~~~~~~~ge~i~~~g~~~-~~ly~I~~G~v~v~~~-~~g~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~a~~~~~v~~i 476 (640)
+....++||...-..-... +++++|++|++++... .+|+. ....+.+||++--- .+.+........++++++.+
T Consensus 259 ~~~~~l~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i~~~~g~~-~~~~l~~GD~~~ip---~~~~H~~~n~~~~~~~~l~v 334 (385)
T 1j58_A 259 SALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHA-RTFNYQAGDVGYVP---FAMGHYVENIGDEPLVFLEI 334 (385)
T ss_dssp EEEEEECTTCEEEEEECSSSCEEEEEEESEEEEEEEEETTEE-EEEEEESSCEEEEC---TTCBEEEEECSSSCEEEEEE
T ss_pred EEEEEECCCcccCceeCCCCCEEEEEEeCeEEEEEEcCCCcE-EEEEEcCCCEEEEC---CCCeEEEEECCCCCEEEEEE
Confidence 3455678887765443344 8999999999998764 44532 24588999987322 24444333333456766666
Q ss_pred e
Q 006573 477 N 477 (640)
Q Consensus 477 ~ 477 (640)
-
T Consensus 335 ~ 335 (385)
T 1j58_A 335 F 335 (385)
T ss_dssp E
T ss_pred E
Confidence 4
No 240
>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B
Probab=32.03 E-value=57 Score=33.45 Aligned_cols=53 Identities=8% Similarity=0.096 Sum_probs=38.7
Q ss_pred ccccccccCCCeEEEeCCCCCeEEEEEeceEEEEEeeCCceEEEEEecCCCeee
Q 006573 398 EMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQVVGEAKTGEICG 451 (640)
Q Consensus 398 ~~~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fG 451 (640)
.+....++||...-..-..++++++|++|+..+.....+.. ....+++||++-
T Consensus 87 s~~~~~l~Pgg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~-~~~~l~~GDv~~ 139 (445)
T 2cav_A 87 RVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGR-DTYKLDQGDAIK 139 (445)
T ss_dssp EEEEEEECSSEEEEEEEESSEEEEEEEESEEEEEEEETTEE-EEEEEETTEEEE
T ss_pred EEEEEEECCCcCccCcCCCCceEEEEEeCEEEEEEEeCCCC-EEEEecCCCEEE
Confidence 34456788998776665567899999999998865333322 466899999873
No 241
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}
Probab=31.82 E-value=1.7e+02 Score=22.31 Aligned_cols=66 Identities=14% Similarity=0.164 Sum_probs=38.6
Q ss_pred cccccCCCeEEEeCCCC-CeE-EEEEeceEEEEEeeCCceEEEEEecCCCeeechhhhcCCCeeeEEEEccceEEEE
Q 006573 401 AEYFPPKEDVILQNEAP-TDF-YILVTGAVDLLVLKNGVEQVVGEAKTGEICGEIGVLCYRPQLFTVRTKRLSQLLR 475 (640)
Q Consensus 401 ~~~~~~ge~i~~~g~~~-~~l-y~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~a~~~~~v~~ 475 (640)
...+.+|..+-..--.. ..+ ++|++|.+.+... +|+ ...+.+||.+=-- .+.+. ..++.+++.++.
T Consensus 37 ~~~~~~g~~~~~H~H~~~~e~~~~vl~G~~~~~~~-~~~---~~~l~~Gd~~~ip---~~~~H--~~~~~~~~~~l~ 104 (110)
T 2q30_A 37 SFTFKAGQELPVHSHNIEGELNIVVLEGEGEFVGD-GDA---VIPAPRGAVLVAP---ISTPH--GVRAVTDMKVLV 104 (110)
T ss_dssp EEEECTTCEEEEECCSSSCEEEEEEEESCEEEECG-GGC---EEEECTTEEEEEE---TTSCE--EEEESSSEEEEE
T ss_pred EEEECCCCcCCcccCCCCccEEEEEEeCEEEEEeC-CCE---EEEECCCCEEEeC---CCCcE--EEEEcCCcEEEE
Confidence 34567887665433332 466 8999999988652 133 3478899875211 23333 445556665544
No 242
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=30.76 E-value=1.6e+02 Score=25.00 Aligned_cols=52 Identities=15% Similarity=0.254 Sum_probs=34.0
Q ss_pred CCCeEEEEEeceEEEEEeeCCceEEEEEecCCCeeechhhhcCCCeeeEEEEccceEEEEee
Q 006573 416 APTDFYILVTGAVDLLVLKNGVEQVVGEAKTGEICGEIGVLCYRPQLFTVRTKRLSQLLRLN 477 (640)
Q Consensus 416 ~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~a~~~~~v~~i~ 477 (640)
..+++++|++|.+++.. +|+ ...+++||.+=-- .+.+..+.. .++|+++.+.
T Consensus 83 ~~eE~~yVLeG~~~l~i--~g~---~~~l~~GD~i~iP---~G~~h~~~n--~~~a~~l~V~ 134 (151)
T 4axo_A 83 NYDEIDYVIDGTLDIII--DGR---KVSASSGELIFIP---KGSKIQFSV--PDYARFIYVT 134 (151)
T ss_dssp SSEEEEEEEEEEEEEEE--TTE---EEEEETTCEEEEC---TTCEEEEEE--EEEEEEEEEE
T ss_pred CCcEEEEEEEeEEEEEE--CCE---EEEEcCCCEEEEC---CCCEEEEEe--CCCEEEEEEE
Confidence 46789999999999986 554 3588999986321 244433333 3667666554
No 243
>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}
Probab=30.72 E-value=79 Score=32.93 Aligned_cols=59 Identities=14% Similarity=0.094 Sum_probs=41.3
Q ss_pred HHHHHhccccccccCCCeEEEeCC-CCCeEEEEEeceEEEEEe-eCCceEEEEEecCCCee
Q 006573 392 LFQLVSEMKAEYFPPKEDVILQNE-APTDFYILVTGAVDLLVL-KNGVEQVVGEAKTGEIC 450 (640)
Q Consensus 392 l~~l~~~~~~~~~~~ge~i~~~g~-~~~~ly~I~~G~v~v~~~-~~g~~~~~~~l~~G~~f 450 (640)
+..+-..+....+.||.++-..-- .++++++|++|.+.+... .+|+......+.+||++
T Consensus 367 L~~l~is~a~v~L~PG~~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~G~~~~~~~l~~GDv~ 427 (510)
T 3c3v_A 367 LRWLGLSAEYGNLYRNALFVPHYNTNAHSIIYALRGRAHVQVVDSNGNRVYDEELQEGHVL 427 (510)
T ss_dssp HHHHTCEEEEEEEETTCEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred cccceEEEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEeCCCCEEEeEEEcCCcEE
Confidence 344444566677888886654433 378999999999998663 44554445679999987
No 244
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=30.31 E-value=1.1e+02 Score=26.42 Aligned_cols=53 Identities=9% Similarity=0.018 Sum_probs=33.5
Q ss_pred CCCCeEEEEEeceEEEEEeeCCceEEEEEecCCCeeechhhhcCCCeeeEEEEccceEEEE
Q 006573 415 EAPTDFYILVTGAVDLLVLKNGVEQVVGEAKTGEICGEIGVLCYRPQLFTVRTKRLSQLLR 475 (640)
Q Consensus 415 ~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~a~~~~~v~~ 475 (640)
..++.+++|++|.+++.. +|+ ...+.+||.|=-- .+.++...-...+.++++.
T Consensus 108 h~gEE~~yVLeG~v~vtl--~g~---~~~L~~Gds~~iP---~g~~H~~~N~~d~~Arll~ 160 (166)
T 2vpv_A 108 FRTYITFHVIQGIVEVTV--CKN---KFLSVKGSTFQIP---AFNEYAIANRGNDEAKMFF 160 (166)
T ss_dssp CSEEEEEEEEESEEEEEE--TTE---EEEEETTCEEEEC---TTCEEEEEECSSSCEEEEE
T ss_pred CCceEEEEEEEeEEEEEE--CCE---EEEEcCCCEEEEC---CCCCEEEEECCCCCEEEEE
Confidence 345779999999999987 443 3478999987422 2344443333444555544
No 245
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=30.26 E-value=1.3e+02 Score=27.63 Aligned_cols=68 Identities=16% Similarity=0.139 Sum_probs=43.0
Q ss_pred cccccC-CCeEEEeCCCCCeEEEEEeceEEEEEeeCCceEEEEEecCCCeeechhhhcCCCeeeEEEEccceEEEEe
Q 006573 401 AEYFPP-KEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQVVGEAKTGEICGEIGVLCYRPQLFTVRTKRLSQLLRL 476 (640)
Q Consensus 401 ~~~~~~-ge~i~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~a~~~~~v~~i 476 (640)
...++| |..+-..--....+++|++|.+++.. +|+ ...+.+||.+--- .+.+........+++.++.+
T Consensus 149 ~~~~~p~g~~~~~H~H~~~e~~~Vl~G~~~~~i--~~~---~~~l~~Gd~i~ip---~~~~H~~~n~~~~~~~~l~v 217 (243)
T 3h7j_A 149 LAKIPGNGGEMPFHKHRNEQIGICIGGGYDMTV--EGC---TVEMKFGTAYFCE---PREDHGAINRSEKESKSINI 217 (243)
T ss_dssp EEEECTTTEEEEEECCSSEEEEEECSSCEEEEE--TTE---EEEECTTCEEEEC---TTCCEEEEECSSSCEEEEEE
T ss_pred EEEECCCCCcCCCEeCCCcEEEEEEECEEEEEE--CCE---EEEECCCCEEEEC---CCCcEEeEeCCCCCEEEEEE
Confidence 345778 77665555556789999999999876 443 3469999986422 24444443333355655544
No 246
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=29.87 E-value=82 Score=31.05 Aligned_cols=50 Identities=10% Similarity=0.201 Sum_probs=34.3
Q ss_pred ccccccCCCeEEEe-CCCCCeEEEEEeceEEEEEee-CCceEEEEEecCCCee
Q 006573 400 KAEYFPPKEDVILQ-NEAPTDFYILVTGAVDLLVLK-NGVEQVVGEAKTGEIC 450 (640)
Q Consensus 400 ~~~~~~~ge~i~~~-g~~~~~ly~I~~G~v~v~~~~-~g~~~~~~~l~~G~~f 450 (640)
....+.||...-.. ....+++++|++|++++.... +|+. ....+++||++
T Consensus 55 ~~~~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~g~~-~~~~l~~GD~~ 106 (361)
T 2vqa_A 55 VYMSLEPGAIRELHWHANAAEWAYVMEGRTRITLTSPEGKV-EIADVDKGGLW 106 (361)
T ss_dssp EEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECTTSCE-EEEEEETTEEE
T ss_pred EEEEEcCCCCCCceeCCCCCEEEEEEEeEEEEEEEeCCCcE-EEEEEcCCCEE
Confidence 34557788765443 333789999999999987643 4432 34689999976
No 247
>2xp1_A SPT6; transcription, IWS1, histone chaperone, mRNA export; 2.20A {Antonospora locustae}
Probab=29.60 E-value=80 Score=27.67 Aligned_cols=37 Identities=11% Similarity=0.046 Sum_probs=30.2
Q ss_pred hccccccCCHHHHHHHHhccccccccCCCeEEEeCCCCCeEEE
Q 006573 380 KVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYI 422 (640)
Q Consensus 380 ~~~~f~~ls~~~l~~l~~~~~~~~~~~ge~i~~~g~~~~~ly~ 422 (640)
++|.|.+++..+.++++.. .+||.|+++...++++-+
T Consensus 13 ~HP~F~n~s~~qAe~~L~~------~~G~~liRPSsk~~~lti 49 (178)
T 2xp1_A 13 KHPLFKNFNVTESENYLRS------STDDFLIRKGSRHGYCVL 49 (178)
T ss_dssp GSTTEECCCHHHHHHHHHH------SSCCEEEEECSSTTEEEE
T ss_pred cCCCcCCCCHHHHHHHHhc------CCCCEEEeecCCCCcEEE
Confidence 5799999999988887766 259999999888776444
No 248
>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A
Probab=29.16 E-value=84 Score=32.50 Aligned_cols=53 Identities=13% Similarity=0.164 Sum_probs=38.3
Q ss_pred ccccccccCCCeEEEeCCC-CCeEEEEEeceEEEEEe-eCCceEEEEEecCCCee
Q 006573 398 EMKAEYFPPKEDVILQNEA-PTDFYILVTGAVDLLVL-KNGVEQVVGEAKTGEIC 450 (640)
Q Consensus 398 ~~~~~~~~~ge~i~~~g~~-~~~ly~I~~G~v~v~~~-~~g~~~~~~~l~~G~~f 450 (640)
.+....+.||.++-..--+ ++++++|++|...+... .+|+......+.+||++
T Consensus 339 s~~~v~l~pGa~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~G~~~~~~~l~~GDv~ 393 (476)
T 1fxz_A 339 SAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGERVFDGELQEGRVL 393 (476)
T ss_dssp CEEEEEECTTCEEEEEEETTCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred eEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEecCCCEEeeeEEcCCCEE
Confidence 3456678888866554333 68999999999998664 44554455679999987
No 249
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=29.07 E-value=73 Score=31.80 Aligned_cols=51 Identities=10% Similarity=0.239 Sum_probs=35.5
Q ss_pred cccccccCCCeEEEeCCCCCeEEEEEeceEEEEEee-CCceEEEEEecCCCee
Q 006573 399 MKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLK-NGVEQVVGEAKTGEIC 450 (640)
Q Consensus 399 ~~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~v~~~~-~g~~~~~~~l~~G~~f 450 (640)
+....+.||...-..--...++++|++|++++...+ +|+. ....+++||++
T Consensus 81 ~~~~~l~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~g~~-~~~~l~~GD~~ 132 (385)
T 1j58_A 81 SVNMRLKPGAIRELHWHKEAEWAYMIYGSARVTIVDEKGRS-FIDDVGEGDLW 132 (385)
T ss_dssp EEEEEECTTCEEEEEEESSCEEEEEEEEEEEEEEECTTSCE-EEEEEETTEEE
T ss_pred EEEEEECCCCCCCCccCChheEEEEEeeeEEEEEEeCCCcE-EEEEeCCCCEE
Confidence 344567888865444334789999999999987744 3542 23489999976
No 250
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=28.91 E-value=1.6e+02 Score=26.96 Aligned_cols=72 Identities=15% Similarity=0.145 Sum_probs=45.8
Q ss_pred cccccccCCCeEEEeCCCCCeEEEEEeceEEEEEeeCCceEEEEEecCCCeeechhhhcCCCeeeEEEEccceEEEEee
Q 006573 399 MKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQVVGEAKTGEICGEIGVLCYRPQLFTVRTKRLSQLLRLN 477 (640)
Q Consensus 399 ~~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~a~~~~~v~~i~ 477 (640)
+....++||..+-..--+...+++|++|.+++.. +|+ ...+.+||.+=. +-.+.+........++|.++.+.
T Consensus 36 ~~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~~--~~~---~~~l~~Gd~i~~--ip~~~~H~~~n~~~~~~~~l~i~ 107 (243)
T 3h7j_A 36 VLMSYVPPHTNVEPHQHKEVQIGMVVSGELMMTV--GDV---TRKMTALESAYI--APPHVPHGARNDTDQEVIAIDIK 107 (243)
T ss_dssp EEEEEECTTEEEEEECCSSEEEEEEEESEEEEEE--TTE---EEEEETTTCEEE--ECTTCCEEEEECSSSCEEEEEEE
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEEeEEEEEE--CCE---EEEECCCCEEEE--cCCCCcEeeEeCCCCcEEEEEEe
Confidence 3445588888776666667889999999999876 443 357889984310 11244444333334557776654
No 251
>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A
Probab=28.69 E-value=93 Score=32.32 Aligned_cols=59 Identities=14% Similarity=0.058 Sum_probs=40.9
Q ss_pred HHHHHhccccccccCCCeEEEeC-CCCCeEEEEEeceEEEEEe-eCCceEEEEEecCCCee
Q 006573 392 LFQLVSEMKAEYFPPKEDVILQN-EAPTDFYILVTGAVDLLVL-KNGVEQVVGEAKTGEIC 450 (640)
Q Consensus 392 l~~l~~~~~~~~~~~ge~i~~~g-~~~~~ly~I~~G~v~v~~~-~~g~~~~~~~l~~G~~f 450 (640)
+..+-..+....+.||..+-..- ..++++++|++|.+.+... .+|+...-..+.+||+|
T Consensus 362 L~~lgls~a~v~l~pG~~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~g~~~~~~~l~~GDv~ 422 (493)
T 2d5f_A 362 LRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNAQGNAVFDGELRRGQLL 422 (493)
T ss_dssp HHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred ccccceEEEEEEccCCceeeeeECCCCCEEEEEEeceEEEEEEcCCCCEEEeEEEcCCCEE
Confidence 34444556667788888655443 3478999999999998664 34554334679999987
No 252
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}
Probab=28.41 E-value=44 Score=27.00 Aligned_cols=44 Identities=11% Similarity=0.060 Sum_probs=29.8
Q ss_pred cccCCCeEEEeCCCCCeEEEEEeceEEEEEeeCCceEEEEEecCCCeee
Q 006573 403 YFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQVVGEAKTGEICG 451 (640)
Q Consensus 403 ~~~~ge~i~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fG 451 (640)
...||..-... +..++++.|++|.+.+..+ +|. ...+++||.+-
T Consensus 48 e~tPG~~~~~~-~~~~E~~~iLeG~~~lt~d-dG~---~~~l~aGD~~~ 91 (116)
T 3es4_A 48 MAEPGIYNYAG-RDLEETFVVVEGEALYSQA-DAD---PVKIGPGSIVS 91 (116)
T ss_dssp EECSEEEEECC-CSEEEEEEEEECCEEEEET-TCC---CEEECTTEEEE
T ss_pred ecCCceeECee-CCCcEEEEEEEeEEEEEeC-CCe---EEEECCCCEEE
Confidence 45555544433 3345899999999999763 453 34889999874
No 253
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}
Probab=27.47 E-value=1.6e+02 Score=23.41 Aligned_cols=68 Identities=12% Similarity=0.135 Sum_probs=37.6
Q ss_pred cccccCCCeEE--EeCCCCCeEEEEEeceEEEEEeeCCceEEEEEecCCCeeechhhhcCCCeeeEEEEccceEEEEe
Q 006573 401 AEYFPPKEDVI--LQNEAPTDFYILVTGAVDLLVLKNGVEQVVGEAKTGEICGEIGVLCYRPQLFTVRTKRLSQLLRL 476 (640)
Q Consensus 401 ~~~~~~ge~i~--~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~a~~~~~v~~i 476 (640)
...++||..+- ..-+..+.+|+|++|.+.+.. +++ ...+.+||++=- -.+.+........+++.++.+
T Consensus 30 ~~~~~pg~~~~~~H~H~~~e~~~~vl~G~~~~~i--~~~---~~~l~~Gd~i~i---~~~~~H~~~~~~~~~~~~~~i 99 (125)
T 3cew_A 30 INHLPAGAGVPFVHSHKQNEEIYGILSGKGFITI--DGE---KIELQAGDWLRI---APDGKRQISAASDSPIGFLCI 99 (125)
T ss_dssp EEEECTTCBCSSEEEESSEEEEEEEEEEEEEEEE--TTE---EEEEETTEEEEE---CTTCCEEEEEBTTBCEEEEEE
T ss_pred EEEECCCCCCCCCccCCCceEEEEEEeCEEEEEE--CCE---EEEeCCCCEEEE---CCCCcEEEEcCCCCCEEEEEE
Confidence 34566666542 233333457779999998876 443 347889987631 124444333322344555443
No 254
>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A
Probab=27.24 E-value=1.1e+02 Score=32.01 Aligned_cols=60 Identities=17% Similarity=0.182 Sum_probs=43.4
Q ss_pred HHHHHHhccccccccCCCeEEEe-CCCCCeEEEEEeceEEEEE-eeCCceEEEEEecCCCee
Q 006573 391 LLFQLVSEMKAEYFPPKEDVILQ-NEAPTDFYILVTGAVDLLV-LKNGVEQVVGEAKTGEIC 450 (640)
Q Consensus 391 ~l~~l~~~~~~~~~~~ge~i~~~-g~~~~~ly~I~~G~v~v~~-~~~g~~~~~~~l~~G~~f 450 (640)
.+..+-..+....+.||-+.-.. .-.++++.+|++|.+.+.. ..+|+......+.+||+|
T Consensus 388 ~L~~LgiS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~G~~v~~~~L~~GDV~ 449 (531)
T 3fz3_A 388 ILRFLRLSAERGFFYRNGIYSPHWNVNAHSVVYVIRGNARVQVVNENGDAILDQEVQQGQLF 449 (531)
T ss_dssp HHHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred ccccCceeEEEEEeecCccccceEcCCCCEEEEEEeCcEEEEEEeCCCcEEEEEEecCCeEE
Confidence 34444445667788888876554 3347899999999999866 345665567789999987
No 255
>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A*
Probab=27.24 E-value=1.6e+02 Score=25.84 Aligned_cols=58 Identities=10% Similarity=0.062 Sum_probs=34.3
Q ss_pred CCeEEEEEeceEEEEEeeCCceEEEEEecCCCeeechhhhcCCCeeeEEEEccceEEEEee
Q 006573 417 PTDFYILVTGAVDLLVLKNGVEQVVGEAKTGEICGEIGVLCYRPQLFTVRTKRLSQLLRLN 477 (640)
Q Consensus 417 ~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~a~~~~~v~~i~ 477 (640)
.+++++|++|+..+...+...+.....+++||.+=- -.+.+........+++.++.+-
T Consensus 96 ~~E~~~Vl~G~~~~~i~~~~g~~~~~~l~~GD~v~i---p~g~~H~~~N~g~~~~~~l~v~ 153 (190)
T 1x82_A 96 RAEVYVALKGKGGMLLQTPEGDAKWISMEPGTVVYV---PPYWAHRTVNIGDEPFIFLAIY 153 (190)
T ss_dssp CCEEEEEEESCEEEEEECTTCCEEEEEECTTCEEEE---CTTCEEEEEECSSSCEEEEEEE
T ss_pred CCEEEEEEcCEEEEEEcCcCCcEEEEEECCCcEEEE---CCCCeEEEEECCcccEEEEEEE
Confidence 368999999999987753311234468999997621 1233333333334556555543
No 256
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=27.21 E-value=1.1e+02 Score=30.02 Aligned_cols=52 Identities=17% Similarity=0.244 Sum_probs=35.9
Q ss_pred cccccccCCCeEEEeCCC-CCeEEEEEeceEEEEEe-eCCceEEEEEecCCCeee
Q 006573 399 MKAEYFPPKEDVILQNEA-PTDFYILVTGAVDLLVL-KNGVEQVVGEAKTGEICG 451 (640)
Q Consensus 399 ~~~~~~~~ge~i~~~g~~-~~~ly~I~~G~v~v~~~-~~g~~~~~~~l~~G~~fG 451 (640)
+....++||..+-..-.. .+++++|++|.+.+... .+|+ .....+++||++=
T Consensus 236 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~v~~~~g~-~~~~~l~~GD~~~ 289 (361)
T 2vqa_A 236 GALIHLEPGAMRQLHWHPNADEWQYVLDGEMDLTVFASEGK-ASVSRLQQGDVGY 289 (361)
T ss_dssp EEEEEECTTCEEEEEECSSCCEEEEEEESCEEEEEECSTTC-EEEEEECTTCEEE
T ss_pred EEEEEECCCcccccccCCCCCEEEEEEeCEEEEEEEcCCCc-EEEEEECCCCEEE
Confidence 445678888876544333 48999999999998753 3443 2345889999874
No 257
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=27.18 E-value=47 Score=28.14 Aligned_cols=16 Identities=31% Similarity=0.486 Sum_probs=6.9
Q ss_pred hhHHHHHHHHHHHHHH
Q 006573 170 FNMLRLWRLRRVSALF 185 (640)
Q Consensus 170 l~~lrllrl~r~~~~~ 185 (640)
++++|++|+.|+.+.+
T Consensus 106 lr~lRvlRllRv~Rll 121 (147)
T 2kyh_A 106 LAGLGLFRLVRLLRFL 121 (147)
T ss_dssp HHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 258
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=27.01 E-value=37 Score=27.74 Aligned_cols=44 Identities=14% Similarity=0.117 Sum_probs=28.9
Q ss_pred cccCCCeEEEeCCCCCeEEEEEeceEEEEEeeCCceEEEEEecCCCeee
Q 006573 403 YFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQVVGEAKTGEICG 451 (640)
Q Consensus 403 ~~~~ge~i~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fG 451 (640)
...||..-....+ .+++++|++|.+.+... +|. ...+++||.+-
T Consensus 55 ~~~pG~~~~~~~~-~~E~~~Vl~G~~~l~~~-~g~---~~~l~~GD~~~ 98 (123)
T 3bcw_A 55 ESTSGSFQSNTTG-YIEYCHIIEGEARLVDP-DGT---VHAVKAGDAFI 98 (123)
T ss_dssp EEEEEEEECCCTT-EEEEEEEEEEEEEEECT-TCC---EEEEETTCEEE
T ss_pred EECCCceeeEcCC-CcEEEEEEEEEEEEEEC-CCe---EEEECCCCEEE
Confidence 3455554433222 27899999999998752 343 34789999874
No 259
>3pjz_A Potassium uptake protein TRKH; structural genomics, PSI-2, protein structure initiative, NE consortium on membrane protein structure; 3.51A {Vibrio parahaemolyticus}
Probab=26.99 E-value=86 Score=32.57 Aligned_cols=44 Identities=11% Similarity=0.095 Sum_probs=31.6
Q ss_pred chHHHHHHHHHhhhhhhcccccCCc--ccCCchhhHHHHHHHHHHH
Q 006573 246 SLWIRYVTSMYWSITTLTTVGYGDL--HPVNTREMVFDILFMLFNL 289 (640)
Q Consensus 246 ~~~~~y~~s~yw~~~t~ttvGygd~--~p~t~~e~~~~i~~~i~g~ 289 (640)
+..+....|++-+++..||.||... ...+..-+++.++.|++|-
T Consensus 302 ~~~~~l~~a~Fq~vS~~TttGF~t~d~~~w~~~~~~ll~~LMfIGG 347 (494)
T 3pjz_A 302 SPYDAFDQALFQTVSISTTAGFTTTGFADWPLFLPVLLLFSSFIGG 347 (494)
T ss_dssp SHHHHHHHHHHHHHHTTTTCCCCSCCCSSCCTHHHHHHHHHTTSCS
T ss_pred CHHHHHHHHHHheeecccCCcccccChHhCCHHHHHHHHHHHHHcC
Confidence 4567788999999999999999743 3344455666677777664
No 260
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=26.86 E-value=58 Score=25.78 Aligned_cols=44 Identities=20% Similarity=0.297 Sum_probs=27.9
Q ss_pred cccCCCeEEEeCCCCCeEEEEEeceEEEEEeeCCceEEEEEecCCCee
Q 006573 403 YFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQVVGEAKTGEIC 450 (640)
Q Consensus 403 ~~~~ge~i~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~f 450 (640)
.++||...-..--....+++|++|.+.+.. +++. ...+.+||.+
T Consensus 33 ~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i--~~~~--~~~l~~Gd~i 76 (117)
T 2b8m_A 33 VLPRGEQMPKHYSNSYVHLIIIKGEMTLTL--EDQE--PHNYKEGNIV 76 (117)
T ss_dssp EEETTCBCCCEECSSCEEEEEEESEEEEEE--TTSC--CEEEETTCEE
T ss_pred EECCCCcCCCEeCCCcEEEEEEeCEEEEEE--CCEE--EEEeCCCCEE
Confidence 455555432222245679999999998876 3432 2278899976
No 261
>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}
Probab=26.59 E-value=1.4e+02 Score=24.74 Aligned_cols=73 Identities=11% Similarity=-0.063 Sum_probs=39.3
Q ss_pred cccccCCCeEEEe-CCCCCeEEEEEeceEEEEEeeCC-ceEEEEEecCCCeeechhhhcCCCeeeEEEEccceEEEEe
Q 006573 401 AEYFPPKEDVILQ-NEAPTDFYILVTGAVDLLVLKNG-VEQVVGEAKTGEICGEIGVLCYRPQLFTVRTKRLSQLLRL 476 (640)
Q Consensus 401 ~~~~~~ge~i~~~-g~~~~~ly~I~~G~v~v~~~~~g-~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~a~~~~~v~~i 476 (640)
...++||..+-.. -...+.+++|++|.+.+...+.. .......+.+||++= +-.+.+........+++.++.+
T Consensus 47 ~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~~~~~~~~~~~~l~~Gd~i~---ip~g~~H~~~n~~~~~~~~l~i 121 (148)
T 2oa2_A 47 LMSIQVGEDIGLEIHPHLDQFLRVEEGRGLVQMGHRQDNLHFQEEVFDDYAIL---IPAGTWHNVRNTGNRPLKLYSI 121 (148)
T ss_dssp EEEECTTCBCCCBCCTTCEEEEEEEESEEEEEEESBTTBCCEEEEEETTCEEE---ECTTCEEEEEECSSSCEEEEEE
T ss_pred EEEECCCCccCceECCCCcEEEEEEeCEEEEEECCccccceeeEEECCCCEEE---ECCCCcEEEEECCCCCEEEEEE
Confidence 3456677654322 22345899999999998764221 000125788999752 1124444333333345555544
No 262
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=26.50 E-value=52 Score=26.10 Aligned_cols=34 Identities=12% Similarity=0.288 Sum_probs=24.2
Q ss_pred CCCCeEEEEEeceEEEEEeeCCceEEEEEecCCCeee
Q 006573 415 EAPTDFYILVTGAVDLLVLKNGVEQVVGEAKTGEICG 451 (640)
Q Consensus 415 ~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fG 451 (640)
...+++++|++|.+++.. +|++ ....+++||.+-
T Consensus 51 ~~~~E~~~Vl~G~~~l~~--~~~~-~~~~l~~Gd~i~ 84 (112)
T 2opk_A 51 SPQDEWVMVVSGSAGIEC--EGDT-APRVMRPGDWLH 84 (112)
T ss_dssp CSSEEEEEEEESCEEEEE--TTCS-SCEEECTTEEEE
T ss_pred CCccEEEEEEeCeEEEEE--CCEE-EEEEECCCCEEE
Confidence 356789999999999976 3332 014789999764
No 263
>2qjv_A Uncharacterized IOLB-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.90A {Salmonella typhimurium LT2}
Probab=25.38 E-value=1.9e+02 Score=27.16 Aligned_cols=77 Identities=12% Similarity=0.050 Sum_probs=53.2
Q ss_pred ccccccccCCCeEEEeCCCCCeEEEEEeceEEEEEeeCCceEEEEEe-cCCCeeech---hhhcCCCeeeEEEEccceEE
Q 006573 398 EMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQVVGEA-KTGEICGEI---GVLCYRPQLFTVRTKRLSQL 473 (640)
Q Consensus 398 ~~~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l-~~G~~fGe~---~l~~~~~~~~~~~a~~~~~v 473 (640)
.+....+++|+..-.+-+..+-..+++.|.+.+.. +|. ....+ ...++|.+. ++.-+....+++.|.+++++
T Consensus 30 ~f~~~~L~~Ge~~~~~~~~~E~~iv~l~G~~~V~~--~g~--~~~~~g~R~svF~~~~p~~lYvp~g~~v~i~a~~~~~~ 105 (270)
T 2qjv_A 30 GFDVWQLXAGESITLPSDERERCLVLVAGLASVXA--ADS--FFYRIGQRMSPFERIPAYSVYLPHHTEAXVTAETDLEL 105 (270)
T ss_dssp EEEEEEECTTCEEEECCSSEEEEEEEEESCEEEEE--TTE--EEEEECCCSSGGGCSCCCEEEECSSCCEEEEESSSEEE
T ss_pred EEEEEEecCCCEEEecCCCcEEEEEEecceEEEEE--CCE--EEeccccccccccCCCCcEEEECCCCEEEEEecCCceE
Confidence 35567789999888887766777888999998876 453 22222 345667654 33334444788999999999
Q ss_pred EEeeH
Q 006573 474 LRLNR 478 (640)
Q Consensus 474 ~~i~~ 478 (640)
+....
T Consensus 106 ~v~sA 110 (270)
T 2qjv_A 106 AVCSA 110 (270)
T ss_dssp EEEEE
T ss_pred EEEee
Confidence 87764
No 264
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=25.10 E-value=52 Score=26.74 Aligned_cols=17 Identities=6% Similarity=0.067 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 006573 208 TLFAVHCAGCFYYLLAA 224 (640)
Q Consensus 208 ~~~~~h~~ac~~~~~~~ 224 (640)
+++++...|+++|.++.
T Consensus 36 ~~~~~~~~a~~~~~~E~ 52 (122)
T 2ih3_C 36 LVIVLLAGSYLAVLAER 52 (122)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhheeee
Confidence 33444556666776663
No 265
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=24.71 E-value=1.7e+02 Score=29.32 Aligned_cols=78 Identities=12% Similarity=0.087 Sum_probs=50.1
Q ss_pred ccccccCCCeEEEeCCCCCeEEEEEeceEEEEEeeCCceEEEEEecCCCeeechhhhcCCCeeeEEEE-ccceEEEEeeH
Q 006573 400 KAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQVVGEAKTGEICGEIGVLCYRPQLFTVRT-KRLSQLLRLNR 478 (640)
Q Consensus 400 ~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~a-~~~~~v~~i~~ 478 (640)
....++||+..-..-...+.+|+|++|...+.. +|+ ...+++||+|-.- .+......-.. .+++.++.+..
T Consensus 297 ~~~~l~PG~~~~~HrH~~~~v~~VleG~G~~~V--~ge---~~~~~~GD~~~iP---~g~~H~~~N~g~~e~~~ll~i~D 368 (394)
T 3bu7_A 297 SMQMLRPGEHTKAHRHTGNVIYNVAKGQGYSIV--GGK---RFDWSEHDIFCVP---AWTWHEHCNTQERDDACLFSFND 368 (394)
T ss_dssp EEEEECTTCBCCCEEESSCEEEEEEECCEEEEE--TTE---EEEECTTCEEEEC---TTCCEEEEECCSSCCEEEEEEES
T ss_pred EEEEECCCCcCCCcccCCcEEEEEEeCeEEEEE--CCE---EEEEeCCCEEEEC---CCCeEEeEeCCCCCCeEEEEeeC
Confidence 456778888766555556789999999986654 553 4588999987432 13333332222 46788888876
Q ss_pred HHHHHHH
Q 006573 479 TTFLNIV 485 (640)
Q Consensus 479 ~~f~~ll 485 (640)
.-+.+-+
T Consensus 369 ~Pl~~~L 375 (394)
T 3bu7_A 369 FPVMEKL 375 (394)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 6555433
No 266
>2lcm_A Voltage-dependent N-type calcium channel subunit; voltage sensor peptide, membrane protein; NMR {Homo sapiens}
Probab=24.12 E-value=60 Score=18.70 Aligned_cols=19 Identities=26% Similarity=0.319 Sum_probs=10.6
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 006573 169 LFNMLRLWRLRRVSALFSR 187 (640)
Q Consensus 169 ~l~~lrllrl~r~~~~~~~ 187 (640)
.++.+|.+|.+|-.+.++.
T Consensus 5 ~l~~lrtlR~LRpLr~isr 23 (28)
T 2lcm_A 5 TIKSLRVLRVLRPLKTIKR 23 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHhcchHHHhh
Confidence 4555666666665555543
No 267
>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*
Probab=23.57 E-value=78 Score=32.09 Aligned_cols=52 Identities=10% Similarity=0.093 Sum_probs=38.0
Q ss_pred ccccccccCCCeEEEeCCCCCeEEEEEeceEEEEEeeCCceEEEEEecCCCee
Q 006573 398 EMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQVVGEAKTGEIC 450 (640)
Q Consensus 398 ~~~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~f 450 (640)
.+....+.||..+-..-..++++++|++|+..+.....+.. ....+++||++
T Consensus 50 s~~~~~l~PGg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~-~~~~l~~GDv~ 101 (416)
T 1uij_A 50 RIVQFQSKPNTILLPHHADADFLLFVLSGRAILTLVNNDDR-DSYNLHPGDAQ 101 (416)
T ss_dssp EEEEEEECTTEEEEEEEESEEEEEEEEESCEEEEEECSSCE-EEEEECTTEEE
T ss_pred EEEEEEeccCcCcccccCCCceEEEEEeeEEEEEEEECCCC-eEEEecCCCEE
Confidence 34567788998776666667889999999998865322322 35689999987
No 268
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=22.31 E-value=98 Score=29.12 Aligned_cols=70 Identities=11% Similarity=0.013 Sum_probs=43.1
Q ss_pred ccccccCCCeEEEeCCCCCeEEEEEeceEEEEEeeCCceEEEEEecCCCeeechhhhcCCCeeeEEEEccceEEEEeeH
Q 006573 400 KAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQVVGEAKTGEICGEIGVLCYRPQLFTVRTKRLSQLLRLNR 478 (640)
Q Consensus 400 ~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~a~~~~~v~~i~~ 478 (640)
....++||..--......+++.+|++|++++... +|+ ...+++||.+=.- .+.+. +.+..+.++++.+.+
T Consensus 73 ~lv~l~PGg~s~~~~h~~EEfiyVleG~l~l~l~-~g~---~~~L~~Gds~y~p---~~~~H--~~~N~~~Ar~l~V~k 142 (266)
T 4e2q_A 73 YLAKMKEMSSSGLPPQDIERLIFVVEGAVTLTNT-SSS---SKKLTVDSYAYLP---PNFHH--SLDCVESATLVVFER 142 (266)
T ss_dssp EEEEECSSEECCCCCTTEEEEEEEEEECEEEEC---CC---CEEECTTEEEEEC---TTCCC--EEEESSCEEEEEEEE
T ss_pred EEEEECcCCcCCCCCCCCeEEEEEEEEEEEEEEC-CCc---EEEEcCCCEEEEC---CCCCE--EEEeCCCEEEEEEEe
Confidence 3456777765322233457899999999999762 143 2478999876322 23333 333457888888765
No 269
>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A
Probab=22.22 E-value=92 Score=31.78 Aligned_cols=52 Identities=8% Similarity=0.060 Sum_probs=38.8
Q ss_pred ccccccccCCCeEEEeCCCCCeEEEEEeceEEEEEeeCCceEEEEEecCCCee
Q 006573 398 EMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQVVGEAKTGEIC 450 (640)
Q Consensus 398 ~~~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~f 450 (640)
.+....+.||..+-..-..++++++|++|+..+....++. .....+++||++
T Consensus 62 s~~~~~l~PGg~~~pHh~~a~Ei~yVl~G~g~v~~v~~~~-~~~~~l~~GDv~ 113 (434)
T 2ea7_A 62 RVVEFKSKPNTLLLPHHADADFLLVVLNGTAVLTLVNPDS-RDSYILEQGHAQ 113 (434)
T ss_dssp EEEEEEECTTEEEEEEEESEEEEEEEEESEEEEEEECSSC-EEEEEEETTEEE
T ss_pred EEEEEEecCCcCccCccCCCceEEEEEecEEEEEEEeCCC-CEEEEeCCCCEE
Confidence 4556788899888777666788999999999886643332 245689999987
No 270
>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A
Probab=21.82 E-value=1.5e+02 Score=30.37 Aligned_cols=59 Identities=15% Similarity=0.159 Sum_probs=41.6
Q ss_pred HHHHHhccccccccCCCeEEEe-CCCCCeEEEEEeceEEEEEe-eCCceEEEEEecCCCee
Q 006573 392 LFQLVSEMKAEYFPPKEDVILQ-NEAPTDFYILVTGAVDLLVL-KNGVEQVVGEAKTGEIC 450 (640)
Q Consensus 392 l~~l~~~~~~~~~~~ge~i~~~-g~~~~~ly~I~~G~v~v~~~-~~g~~~~~~~l~~G~~f 450 (640)
+..+--.+....+.||-+.... .-.+.++++|++|.+.+..- .+|+...-..+.+||+|
T Consensus 317 L~~l~iS~a~v~l~pG~~~~pH~Hp~A~Ei~yV~~G~~~v~vv~~~g~~~~~~~l~~GDv~ 377 (459)
T 2e9q_A 317 LRQVRLSAERGVLYSNAMVAPHYTVNSHSVMYATRGNARVQVVDNFGQSVFDGEVREGQVL 377 (459)
T ss_dssp HHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred ccccccceEEEEeeCCcCccceECCCCCEEEEEEeeEEEEEEEeCCCCEEEeeEEeCCcEE
Confidence 4444455666778888766544 34578999999999988663 45554444679999987
No 271
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=21.64 E-value=2.3e+02 Score=25.97 Aligned_cols=65 Identities=12% Similarity=0.149 Sum_probs=41.7
Q ss_pred cccccCCCeEEEeCCCCCeEEEEEeceEEEEEeeCCceEEEEEecCCCeeechhhhcCCCeeeEEEEccceEEEEee
Q 006573 401 AEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQVVGEAKTGEICGEIGVLCYRPQLFTVRTKRLSQLLRLN 477 (640)
Q Consensus 401 ~~~~~~ge~i~~~g~~~~~ly~I~~G~v~v~~~~~g~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~a~~~~~v~~i~ 477 (640)
...++||...-..- .+++++|++|++++.. +|+ ...+++||.+--- .+.+...... ++++++.+.
T Consensus 54 ~~~l~Pg~~~~~~~--~ee~~~Vl~G~~~~~~--~~~---~~~l~~Gd~~~~p---~~~~H~~~n~--~~~~~l~v~ 118 (246)
T 1sfn_A 54 TAEMPAGAQATESV--YQRFAFVLSGEVDVAV--GGE---TRTLREYDYVYLP---AGEKHMLTAK--TDARVSVFE 118 (246)
T ss_dssp EEEECTTCEEECCS--SEEEEEEEEEEEEEEC--SSC---EEEECTTEEEEEC---TTCCCEEEEE--EEEEEEEEE
T ss_pred EEEECCCCcCCCCc--eeEEEEEEECEEEEEE--CCE---EEEECCCCEEEEC---CCCCEEEEeC--CCEEEEEEE
Confidence 45677876554432 7789999999999876 444 3479999976422 2444443333 667766654
No 272
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*
Probab=21.44 E-value=91 Score=26.49 Aligned_cols=73 Identities=10% Similarity=0.075 Sum_probs=40.0
Q ss_pred cccccCCCeEEEeCCCCCeEEEEEeceEEEEEeeCCc----eEEEEEecCCCeeechhhhcCCCeeeEEEE-ccceEEEE
Q 006573 401 AEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGV----EQVVGEAKTGEICGEIGVLCYRPQLFTVRT-KRLSQLLR 475 (640)
Q Consensus 401 ~~~~~~ge~i~~~g~~~~~ly~I~~G~v~v~~~~~g~----~~~~~~l~~G~~fGe~~l~~~~~~~~~~~a-~~~~~v~~ 475 (640)
...++||...-..-....++++|++|.+.+...+.+. +.....+.+||++=- -.+.++...... .+++.++.
T Consensus 45 ~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~~~~~~~~~~~~l~~Gd~i~i---p~~~~H~~~n~~~~~~~~~l~ 121 (163)
T 1lr5_A 45 LQTISPGQRTPIHRHSCEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTFSI---PVNDPHQVWNSDEHEDLQVLV 121 (163)
T ss_dssp EEEECTTCBCCEEEESSCEEEEEEECCEEEEECCSSSSSCCSCEEEEECTTEEEEE---CTTCCEEEECCCSSSCEEEEE
T ss_pred EEEECCCCcCCCeECCCCeEEEEEeCEEEEEECCccccccCccEEEEeCCCCEEEE---CCCCcEEeEeCCCCCCEEEEE
Confidence 4456677654222224567999999999988743211 112457899997632 124444333222 33555554
Q ss_pred e
Q 006573 476 L 476 (640)
Q Consensus 476 i 476 (640)
+
T Consensus 122 i 122 (163)
T 1lr5_A 122 I 122 (163)
T ss_dssp E
T ss_pred E
Confidence 4
No 273
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23
Probab=20.16 E-value=1.8e+02 Score=28.66 Aligned_cols=75 Identities=12% Similarity=0.046 Sum_probs=46.1
Q ss_pred ccccccCCCeEEEeCCCCCeEEEEEeceEEE-EEeeCCceEEEEEecCCCeeechhhhcCCCeeeEEEEccceEEEEeeH
Q 006573 400 KAEYFPPKEDVILQNEAPTDFYILVTGAVDL-LVLKNGVEQVVGEAKTGEICGEIGVLCYRPQLFTVRTKRLSQLLRLNR 478 (640)
Q Consensus 400 ~~~~~~~ge~i~~~g~~~~~ly~I~~G~v~v-~~~~~g~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~a~~~~~v~~i~~ 478 (640)
....++||+..-..--....+++|++|+..+ .. +|+ ...+++||+|=- -.+.+........+++.++.+..
T Consensus 103 ~~~~l~PG~~~~~H~H~~~e~~yVl~G~g~~t~v--~g~---~~~l~~GD~~~i---P~g~~H~~~n~~~~~~~~l~v~d 174 (354)
T 2d40_A 103 GLQLIMPGEVAPSHRHNQSALRFIVEGKGAFTAV--DGE---RTPMNEGDFILT---PQWRWHDHGNPGDEPVIWLDGLD 174 (354)
T ss_dssp EEEEECTTCEEEEEEESSCEEEEEEECSSCEEEE--TTE---EEECCTTCEEEE---CTTSCEEEECCSSSCEEEEEEEC
T ss_pred EEEEECCCCCcCCeecCcceEEEEEEEEEEEEEE--CCE---EEEEcCCCEEEE---CCCCcEEeEeCCCCCEEEEEEEC
Confidence 3456788877644334567999999999866 33 443 358999998732 12444433333345677776664
Q ss_pred HHHH
Q 006573 479 TTFL 482 (640)
Q Consensus 479 ~~f~ 482 (640)
..+.
T Consensus 175 ~p~~ 178 (354)
T 2d40_A 175 LPLV 178 (354)
T ss_dssp HHHH
T ss_pred chhH
Confidence 4443
Done!