BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006577
(640 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VM6|A Chain A, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakarensis Kod1 In Complex With
Alpha-D-Ribose-1,5- Bisphosphate
pdb|3VM6|B Chain B, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakarensis Kod1 In Complex With
Alpha-D-Ribose-1,5- Bisphosphate
pdb|3VM6|C Chain C, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakarensis Kod1 In Complex With
Alpha-D-Ribose-1,5- Bisphosphate
Length = 338
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 104/224 (46%), Gaps = 16/224 (7%)
Query: 387 FLIDCRPLSVSMGNAIRFLKSQIAKIPISLSE--SEAKATLHSDIERFINEKIILADRVI 444
L + RP +VS+ NA+R++ + KI S + + + + + FI+ +R I
Sbjct: 74 ILFETRPTAVSLPNALRYVMHR-GKIAYSSGADLEQLRFVIINAAKEFIHNSEKALER-I 131
Query: 445 VKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEXXXXXXXXXXX 504
+ +I DGDV++T+ S A +++ A E GK +V++ ++RPK +
Sbjct: 132 GEFGAKRIEDGDVIMTHSHSKAAISVMKTAWEQGKDIKVIVTETRPKWQGKITAKELASY 191
Query: 505 XXSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCE 564
Y +A + + +V +GA S+ NG V +++GTA +A+ A + ++ E
Sbjct: 192 GIPVIYVVDSAARHYMKMTDKVVMGADSITVNGAVINKIGTALIALTAKEHRVWTMIAAE 251
Query: 565 AYKFHERVQL------------DSICSNELGMHSKNMGTPNTSF 596
YKFH L + I +EL KN+ N +F
Sbjct: 252 TYKFHPETMLGQLVEIEMRDPTEVIPEDELKTWPKNIEVWNPAF 295
>pdb|3A11|A Chain A, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1
pdb|3A11|B Chain B, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1
pdb|3A11|C Chain C, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1
pdb|3A11|D Chain D, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1
pdb|3A11|E Chain E, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1
pdb|3A11|F Chain F, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1
Length = 338
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 104/224 (46%), Gaps = 16/224 (7%)
Query: 387 FLIDCRPLSVSMGNAIRFLKSQIAKIPISLSE--SEAKATLHSDIERFINEKIILADRVI 444
L + RP +VS+ NA+R++ + KI S + + + + + FI+ +R I
Sbjct: 74 ILFETRPTAVSLPNALRYVMHR-GKIAYSSGADLEQLRFVIINAAKEFIHNSEKALER-I 131
Query: 445 VKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEXXXXXXXXXXX 504
+ +I DGDV++T+ S A +++ A E GK +V++ ++RPK +
Sbjct: 132 GEFGAKRIEDGDVIMTHCHSKAAISVMKTAWEQGKDIKVIVTETRPKWQGKITAKELASY 191
Query: 505 XXSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCE 564
Y +A + + +V +GA S+ NG V +++GTA +A+ A + ++ E
Sbjct: 192 GIPVIYVVDSAARHYMKMTDKVVMGADSITVNGAVINKIGTALIALTAKEHRVWTMIAAE 251
Query: 565 AYKFHERVQL------------DSICSNELGMHSKNMGTPNTSF 596
YKFH L + I +EL KN+ N +F
Sbjct: 252 TYKFHPETMLGQLVEIEMRDPTEVIPEDELKTWPKNIEVWNPAF 295
>pdb|3A9C|B Chain B, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1 In Complex With
Ribulose-1,5- Bisphosphate
Length = 326
Score = 82.4 bits (202), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 104/222 (46%), Gaps = 14/222 (6%)
Query: 387 FLIDCRPLSVSMGNAIRFLKSQIAKIPISLSE--SEAKATLHSDIERFINEKIILADRVI 444
L + RP +VS+ NA+R++ + KI S + + + + + FI+ +R I
Sbjct: 64 ILFETRPTAVSLPNALRYVMHR-GKIAYSSGADLEQLRFVIINAAKEFIHNSEKALER-I 121
Query: 445 VKHAVTKIRDGDVLLTYG-SSSAVEMILQHAHELGKQFRVVIVDSRPKHEXXXXXXXXXX 503
+ +I DGDV++T+ S A +++ A E GK +V++ ++RPK +
Sbjct: 122 GEFGAKRIEDGDVIMTHXCHSKAAISVMKTAWEQGKDIKVIVTETRPKWQGKITAKELAS 181
Query: 504 XXXSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563
Y +A + + +V +GA S+ NG V +++GTA +A+ A + ++
Sbjct: 182 YGIPVIYVVDSAARHYMKMTDKVVMGADSITVNGAVINKIGTALIALTAKEHRVWTMIAA 241
Query: 564 EAYKFHERVQL---------DSICSNELGMHSKNMGTPNTSF 596
E YKFH L + I +EL KN+ N +F
Sbjct: 242 ETYKFHPETMLVEIEMRDPTEVIPEDELKTWPKNIEVWNPAF 283
>pdb|3A9C|C Chain C, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1 In Complex With
Ribulose-1,5- Bisphosphate
pdb|3A9C|E Chain E, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1 In Complex With
Ribulose-1,5- Bisphosphate
Length = 322
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 104/225 (46%), Gaps = 17/225 (7%)
Query: 387 FLIDCRPLSVSMGNAIRFLKSQIAKIPISLSE--SEAKATLHSDIERFINEKIILADRVI 444
L + RP +VS+ NA+R++ + KI S + + + + + FI+ +R I
Sbjct: 57 ILFETRPTAVSLPNALRYVMHR-GKIAYSSGADLEQLRFVIINAAKEFIHNSEKALER-I 114
Query: 445 VKHAVTKIRDGDVLLTYG-SSSAVEMILQHAHELGKQFRVVIVDSRPKHEXXXXXXXXXX 503
+ +I DGDV++T+ S A +++ A E GK +V++ ++RPK +
Sbjct: 115 GEFGAKRIEDGDVIMTHXCHSKAAISVMKTAWEQGKDIKVIVTETRPKWQGKITAKELAS 174
Query: 504 XXXSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563
Y +A + + +V +GA S+ NG V +++GTA +A+ A + ++
Sbjct: 175 YGIPVIYVVDSAARHYMKMTDKVVMGADSITVNGAVINKIGTALIALTAKEHRVWTMIAA 234
Query: 564 EAYKFHERVQL------------DSICSNELGMHSKNMGTPNTSF 596
E YKFH L + I +EL KN+ N +F
Sbjct: 235 ETYKFHPETMLGQLVEIEMRDPTEVIPEDELKTWPKNIEVWNPAF 279
>pdb|3A9C|A Chain A, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1 In Complex With
Ribulose-1,5- Bisphosphate
Length = 321
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 104/225 (46%), Gaps = 17/225 (7%)
Query: 387 FLIDCRPLSVSMGNAIRFLKSQIAKIPISLSE--SEAKATLHSDIERFINEKIILADRVI 444
L + RP +VS+ NA+R++ + KI S + + + + + FI+ +R I
Sbjct: 56 ILFETRPTAVSLPNALRYVMHR-GKIAYSSGADLEQLRFVIINAAKEFIHNSEKALER-I 113
Query: 445 VKHAVTKIRDGDVLLTYG-SSSAVEMILQHAHELGKQFRVVIVDSRPKHEXXXXXXXXXX 503
+ +I DGDV++T+ S A +++ A E GK +V++ ++RPK +
Sbjct: 114 GEFGAKRIEDGDVIMTHXCHSKAAISVMKTAWEQGKDIKVIVTETRPKWQGKITAKELAS 173
Query: 504 XXXSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563
Y +A + + +V +GA S+ NG V +++GTA +A+ A + ++
Sbjct: 174 YGIPVIYVVDSAARHYMKMTDKVVMGADSITVNGAVINKIGTALIALTAKEHRVWTMIAA 233
Query: 564 EAYKFHERVQL------------DSICSNELGMHSKNMGTPNTSF 596
E YKFH L + I +EL KN+ N +F
Sbjct: 234 ETYKFHPETMLGQLVEIEMRDPTEVIPEDELKTWPKNIEVWNPAF 278
>pdb|3A9C|D Chain D, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1 In Complex With
Ribulose-1,5- Bisphosphate
pdb|3A9C|F Chain F, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1 In Complex With
Ribulose-1,5- Bisphosphate
Length = 323
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 104/225 (46%), Gaps = 17/225 (7%)
Query: 387 FLIDCRPLSVSMGNAIRFLKSQIAKIPISLSE--SEAKATLHSDIERFINEKIILADRVI 444
L + RP +VS+ NA+R++ + KI S + + + + + FI+ +R I
Sbjct: 58 ILFETRPTAVSLPNALRYVMHR-GKIAYSSGADLEQLRFVIINAAKEFIHNSEKALER-I 115
Query: 445 VKHAVTKIRDGDVLLTYG-SSSAVEMILQHAHELGKQFRVVIVDSRPKHEXXXXXXXXXX 503
+ +I DGDV++T+ S A +++ A E GK +V++ ++RPK +
Sbjct: 116 GEFGAKRIEDGDVIMTHXCHSKAAISVMKTAWEQGKDIKVIVTETRPKWQGKITAKELAS 175
Query: 504 XXXSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563
Y +A + + +V +GA S+ NG V +++GTA +A+ A + ++
Sbjct: 176 YGIPVIYVVDSAARHYMKMTDKVVMGADSITVNGAVINKIGTALIALTAKEHRVWTMIAA 235
Query: 564 EAYKFHERVQL------------DSICSNELGMHSKNMGTPNTSF 596
E YKFH L + I +EL KN+ N +F
Sbjct: 236 ETYKFHPETMLGQLVEIEMRDPTEVIPEDELKTWPKNIEVWNPAF 280
>pdb|1VB5|A Chain A, Crystal Structure Analysis Of The Pyrococcus Horikoshii
Ot3 Translation Initiation Factor Eif-2b
pdb|1VB5|B Chain B, Crystal Structure Analysis Of The Pyrococcus Horikoshii
Ot3 Translation Initiation Factor Eif-2b
Length = 276
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 64/145 (44%)
Query: 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEXXXXXXXXXXXXXSCTYT 511
I DGDV++T+ SS V I++ A E K+F+V++ +S P +E
Sbjct: 107 IDDGDVIITHSFSSTVLEIIRTAKERKKRFKVILTESSPDYEGLHLARELEFSGIEFEVI 166
Query: 512 HINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHER 571
+ E + +GA + +G V ++ GT +A+ + IP V E YKFH
Sbjct: 167 TDAQMGLFCREASIAIVGADMITKDGYVVNKAGTYLLALACHENAIPFYVAAETYKFHPT 226
Query: 572 VQLDSICSNELGMHSKNMGTPNTSF 596
++ + E + N+ N F
Sbjct: 227 LKSGDVMLMERDLIRGNVRIRNVLF 251
>pdb|3ECS|A Chain A, Crystal Structure Of Human Eif2b Alpha
pdb|3ECS|B Chain B, Crystal Structure Of Human Eif2b Alpha
pdb|3ECS|C Chain C, Crystal Structure Of Human Eif2b Alpha
pdb|3ECS|D Chain D, Crystal Structure Of Human Eif2b Alpha
pdb|3ECS|E Chain E, Crystal Structure Of Human Eif2b Alpha
pdb|3ECS|F Chain F, Crystal Structure Of Human Eif2b Alpha
pdb|3ECS|G Chain G, Crystal Structure Of Human Eif2b Alpha
pdb|3ECS|H Chain H, Crystal Structure Of Human Eif2b Alpha
Length = 315
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 56/119 (47%)
Query: 450 TKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEXXXXXXXXXXXXXSCT 509
T I+DG +LT+ S V +L+ A K+F V + +S+P T
Sbjct: 117 TFIKDGATILTHAYSRVVLRVLEAAVAAKKRFSVYVTESQPDLSGKKXAKALCHLNVPVT 176
Query: 510 YTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKF 568
A+ YI + V +GA V+ NG + +++GT A+ A + P V E++KF
Sbjct: 177 VVLDAAVGYIXEKADLVIVGAEGVVENGGIINKIGTNQXAVCAKAQNKPFYVVAESFKF 235
>pdb|1T5O|A Chain A, Crystal Structure Of The Translation Initiation Factor
Eif-2b, Subunit Delta, From A. Fulgidus
pdb|1T5O|B Chain B, Crystal Structure Of The Translation Initiation Factor
Eif-2b, Subunit Delta, From A. Fulgidus
pdb|1T5O|C Chain C, Crystal Structure Of The Translation Initiation Factor
Eif-2b, Subunit Delta, From A. Fulgidus
pdb|1T5O|D Chain D, Crystal Structure Of The Translation Initiation Factor
Eif-2b, Subunit Delta, From A. Fulgidus
Length = 351
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 95/219 (43%), Gaps = 27/219 (12%)
Query: 376 DLTAKISSYVSFLIDCRPLSVSMGNAIR-----FLKSQIAKIPISLSESEAKATLHSDIE 430
+L + FL RP +V++ I LK + + L+ EA+ D+E
Sbjct: 72 ELKEHLKKAADFLASTRPTAVNLFVGIERALNAALKGESVEEVKELALREAEKLAEEDVE 131
Query: 431 RFINEKIILADRVIVKHAVTKIRDGDVLLTY---GSSSAVEM-----ILQHAHELGKQFR 482
R +R + ++ + DGDV+LTY G + V+ +++ A E GK+ R
Sbjct: 132 R---------NRKMGEYGAELLEDGDVVLTYCNAGRLATVDWGTALGVVRSAVEQGKEIR 182
Query: 483 VVIVDSRPKHEXXXXXXXXXXXXXSCTYTHINAISYIIHE---VTRVFLGASSVLSNGTV 539
V+ ++RP ++ +++ I+ + V +V +GA ++ + V
Sbjct: 183 VIACETRPLNQGSRLTCWELMEDGIDVTLITDSMVGIVMQKGMVDKVIVGADRIVRDA-V 241
Query: 540 CSRVGTACVAMVAYGFHIPVLVCCEAYKF-HERVQLDSI 577
+++GT V++VA +IP V F ER D +
Sbjct: 242 FNKIGTYTVSVVAKHHNIPFYVAAPKATFDWERTAKDVV 280
>pdb|1T9K|A Chain A, X-ray Crystal Structure Of Aif-2b Alpha Subunit-related
Translation Initiation Factor [thermotoga Maritima]
pdb|1T9K|B Chain B, X-ray Crystal Structure Of Aif-2b Alpha Subunit-related
Translation Initiation Factor [thermotoga Maritima]
pdb|1T9K|C Chain C, X-ray Crystal Structure Of Aif-2b Alpha Subunit-related
Translation Initiation Factor [thermotoga Maritima]
pdb|1T9K|D Chain D, X-ray Crystal Structure Of Aif-2b Alpha Subunit-related
Translation Initiation Factor [thermotoga Maritima]
Length = 347
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 93/234 (39%), Gaps = 32/234 (13%)
Query: 346 GGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIR-- 403
G A +A + +RDY T LT L RP +V++ A+
Sbjct: 51 GAPAIGVAAAFGYVLGLRDYKTG-------SLTDWXKQVKETLARTRPTAVNLFWALNRX 103
Query: 404 ---FLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLT 460
F ++ + + E+EA + DIE ++ I K+ I+DG +LT
Sbjct: 104 EKVFFENADRENLFEILENEALKXAYEDIE---------VNKAIGKNGAQLIKDGSTILT 154
Query: 461 YGSSSAVEMI--------LQHAHELGKQFRVVIVDSRPKHEXXXXXXXXXXXXXSCTYTH 512
+ ++ A+ + ++ A E GK+ RV ++RP + Y
Sbjct: 155 HCNAGALATVDYGTALGVIRAAVESGKRIRVFADETRPYLQGARLTAWELXKDGIEVYVI 214
Query: 513 I-NAISYIIHE--VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563
N ++ + V +GA + NG +++GT +A++A +IP V
Sbjct: 215 TDNXAGWLXKRGLIDAVVVGADRIALNGDTANKIGTYSLAVLAKRNNIPFYVAA 268
>pdb|2YRF|A Chain A, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase From Bacillus Subtilis Complexed With Sulfate
Ion
pdb|2YRF|B Chain B, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase From Bacillus Subtilis Complexed With Sulfate
Ion
pdb|2YVK|A Chain A, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase Product Complex From Bacillus Subtilis
pdb|2YVK|B Chain B, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase Product Complex From Bacillus Subtilis
pdb|2YVK|C Chain C, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase Product Complex From Bacillus Subtilis
pdb|2YVK|D Chain D, Crystal Structure Of 5-Methylthioribose 1-Phosphate
Isomerase Product Complex From Bacillus Subtilis
Length = 374
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 51/242 (21%), Positives = 100/242 (41%), Gaps = 29/242 (11%)
Query: 349 ARCIAMLQAFQEAI--RDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLK 406
A I + AF A+ +D T R ++ +L RP ++++ A+ L
Sbjct: 74 APAIGITAAFGLALAAKDIETDNVTEFRR----RLEDIKQYLNSSRPTAINLSWALERLS 129
Query: 407 SQIAKIPISLSESEAKATL-HSDIERFINEKIILADRVIVKHAVTKIRDGDVLLT----- 460
+ ++S +EAK L H I+ + ++ R+I ++A+ + GD ++T
Sbjct: 130 HSVEN---AISVNEAKTNLVHEAIQIQVEDEETC--RLIGQNALQLFKKGDRIMTICNAG 184
Query: 461 ------YGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEXXXXXXXXXXXX-XSCTYTHI 513
YG++ A L +LG + ++RP + T
Sbjct: 185 SIATSRYGTALA-PFYLAKQKDLG--LHIYACETRPVLQGSRLTAWELMQGGIDVTLITD 241
Query: 514 NAISYIIHE--VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHER 571
+ ++ + E ++ V +GA + NG +++GT +A++A F IP V F +
Sbjct: 242 SMAAHTMKEKQISAVIVGADRIAKNGDTANKIGTYGLAILANAFDIPFFVAAPLSTFDTK 301
Query: 572 VQ 573
V+
Sbjct: 302 VK 303
>pdb|2A0U|A Chain A, Crystal Structure Of The Eukaryotic Initiation Factor 2b
From Leishmania Major At 2.1 A Resolution
pdb|2A0U|B Chain B, Crystal Structure Of The Eukaryotic Initiation Factor 2b
From Leishmania Major At 2.1 A Resolution
Length = 383
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 44/202 (21%), Positives = 85/202 (42%), Gaps = 23/202 (11%)
Query: 375 RDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKI-PISLSESEAKATLHSDIERFI 433
R++ + + F+ RP +V++ N +R LK+Q+ K+ P + A+A + +
Sbjct: 91 REVQTFLLTSCDFVXTSRPTAVNLFNCLRDLKAQVDKLDPTKAAAEVAQAFVELAEAVYT 150
Query: 434 NEKIILADRVIVKHAVTKI--------RDGDVLLTYGSSSAVEM--------ILQHAHEL 477
N+ + + I +H I RD +LT ++ A+ +++
Sbjct: 151 ND--VAFNEGIXRHGAAHILAAAKAEGRDKVSILTICNTGALATSRYGTALGVVRQLFYD 208
Query: 478 GKQFRVVIVDSRPKHEXXXXXXXX-XXXXXSCTYTHINAISYII--HEVTRVFLGASSVL 534
GK RV ++RP ++ CT A S + ++ V +GA +
Sbjct: 209 GKLERVYACETRPWNQGARLTVYECVQEDIPCTLICDGAASSLXLNRKIDAVVVGADRIC 268
Query: 535 SNGTVCSRVGTACVAMVAYGFH 556
NG +++GT +A+ A FH
Sbjct: 269 QNGDTANKIGTYNLAVSA-KFH 289
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,058,215
Number of Sequences: 62578
Number of extensions: 516398
Number of successful extensions: 903
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 877
Number of HSP's gapped (non-prelim): 12
length of query: 640
length of database: 14,973,337
effective HSP length: 105
effective length of query: 535
effective length of database: 8,402,647
effective search space: 4495416145
effective search space used: 4495416145
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)