Query 006577
Match_columns 640
No_of_seqs 274 out of 1443
Neff 4.7
Searched_HMMs 46136
Date Thu Mar 28 11:26:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006577.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006577hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1467 Translation initiation 100.0 8.1E-96 2E-100 779.6 33.9 521 40-627 6-554 (556)
2 TIGR00512 salvage_mtnA S-methy 100.0 4.3E-66 9.3E-71 543.4 28.4 298 298-619 8-325 (331)
3 COG0182 Predicted translation 100.0 6.9E-66 1.5E-70 531.5 24.2 294 299-613 13-322 (346)
4 PRK05720 mtnA methylthioribose 100.0 3.3E-65 7.2E-70 539.5 29.9 294 297-613 10-319 (344)
5 PRK06036 translation initiatio 100.0 5E-64 1.1E-68 529.2 28.8 294 298-615 11-320 (339)
6 PRK05772 translation initiatio 100.0 7.7E-64 1.7E-68 530.9 29.6 299 297-615 23-341 (363)
7 PRK08334 translation initiatio 100.0 9.5E-63 2.1E-67 520.8 29.3 297 298-615 22-333 (356)
8 TIGR00511 ribulose_e2b2 ribose 100.0 1.8E-62 4E-67 511.0 29.6 286 318-626 2-300 (301)
9 PRK08535 translation initiatio 100.0 3.5E-62 7.6E-67 510.7 31.1 291 327-626 2-305 (310)
10 PRK06371 translation initiatio 100.0 2.7E-62 5.9E-67 513.4 27.4 283 298-622 20-326 (329)
11 TIGR00524 eIF-2B_rel eIF-2B al 100.0 6.1E-61 1.3E-65 500.1 27.6 282 315-618 1-296 (303)
12 COG1184 GCD2 Translation initi 100.0 1E-58 2.2E-63 479.5 30.7 287 328-624 2-296 (301)
13 PF01008 IF-2B: Initiation fac 100.0 9.5E-59 2.1E-63 474.7 22.9 270 343-617 1-274 (282)
14 PRK08335 translation initiatio 100.0 1.3E-57 2.8E-62 468.9 26.4 256 318-615 6-261 (275)
15 KOG1468 Predicted translation 100.0 7.2E-56 1.6E-60 447.9 21.5 295 299-614 12-331 (354)
16 KOG1465 Translation initiation 100.0 7.6E-48 1.7E-52 393.7 26.9 287 331-622 10-340 (353)
17 KOG1466 Translation initiation 100.0 7.4E-45 1.6E-49 365.8 27.0 281 337-626 18-310 (313)
18 PRK06372 translation initiatio 100.0 1.6E-42 3.6E-47 353.1 23.2 205 384-615 34-238 (253)
19 TIGR00021 rpiA ribose 5-phosph 97.5 0.0017 3.8E-08 66.1 13.1 124 442-582 3-133 (218)
20 PRK00702 ribose-5-phosphate is 97.4 0.0026 5.6E-08 65.0 13.3 127 440-582 6-137 (220)
21 cd01398 RPI_A RPI_A: Ribose 5- 97.2 0.0029 6.4E-08 64.0 11.7 126 442-582 3-133 (213)
22 PF00455 DeoRC: DeoR C termina 96.6 0.036 7.9E-07 53.6 12.5 124 440-572 5-143 (161)
23 PRK10434 srlR DNA-bindng trans 96.5 0.022 4.7E-07 59.0 10.9 124 440-572 77-215 (256)
24 PRK13509 transcriptional repre 96.0 0.042 9.1E-07 56.8 9.9 122 440-572 79-214 (251)
25 PRK09802 DNA-binding transcrip 96.0 0.12 2.6E-06 54.1 13.3 123 441-572 93-230 (269)
26 PRK10411 DNA-binding transcrip 95.6 0.2 4.3E-06 51.6 13.0 122 440-571 79-215 (240)
27 COG1349 GlpR Transcriptional r 95.3 0.25 5.5E-06 51.2 12.8 125 440-573 77-216 (253)
28 PRK10906 DNA-binding transcrip 95.1 0.21 4.6E-06 51.7 11.4 124 440-572 77-215 (252)
29 PRK10681 DNA-binding transcrip 93.8 0.63 1.4E-05 48.2 11.5 122 441-571 79-215 (252)
30 PLN02384 ribose-5-phosphate is 93.7 0.92 2E-05 47.9 12.4 117 443-572 38-159 (264)
31 PRK13978 ribose-5-phosphate is 92.5 1.7 3.7E-05 45.1 12.0 127 442-581 9-139 (228)
32 PF02254 TrkA_N: TrkA-N domain 87.0 3.4 7.3E-05 36.6 8.0 93 458-567 1-100 (116)
33 COG0120 RpiA Ribose 5-phosphat 85.4 10 0.00022 39.5 11.4 119 442-572 8-128 (227)
34 PRK05973 replicative DNA helic 83.6 11 0.00024 39.2 11.0 114 451-568 60-195 (237)
35 PF03853 YjeF_N: YjeF-related 81.6 22 0.00047 34.7 11.6 123 437-562 5-137 (169)
36 KOG0259 Tyrosine aminotransfer 80.9 8.9 0.00019 42.9 9.4 115 440-561 108-237 (447)
37 PF01073 3Beta_HSD: 3-beta hyd 80.8 4.1 8.9E-05 42.7 6.7 105 460-567 2-118 (280)
38 TIGR01437 selA_rel uncharacter 80.1 18 0.0004 39.1 11.6 137 418-561 26-184 (363)
39 PRK10886 DnaA initiator-associ 79.2 60 0.0013 32.8 14.2 99 442-565 28-145 (196)
40 COG0426 FpaA Uncharacterized f 78.6 32 0.0007 38.5 12.9 141 424-568 183-341 (388)
41 TIGR00474 selA seryl-tRNA(sec) 77.4 76 0.0016 36.1 15.8 111 448-562 131-251 (454)
42 PRK11557 putative DNA-binding 74.2 46 0.001 34.4 12.1 43 488-530 185-227 (278)
43 cd00293 USP_Like Usp: Universa 74.1 55 0.0012 27.9 11.6 89 470-562 19-130 (130)
44 PRK00414 gmhA phosphoheptose i 74.0 71 0.0015 31.9 13.0 38 521-565 110-147 (192)
45 cd01989 STK_N The N-terminal d 73.9 38 0.00083 30.8 10.3 60 501-563 74-144 (146)
46 TIGR00273 iron-sulfur cluster- 72.9 31 0.00067 39.0 11.2 51 522-573 181-232 (432)
47 PRK02947 hypothetical protein; 72.4 1.1E+02 0.0024 31.7 14.4 39 492-530 120-169 (246)
48 cd01424 MGS_CPS_II Methylglyox 71.9 45 0.00097 29.8 10.0 94 456-565 2-104 (110)
49 PRK01438 murD UDP-N-acetylmura 71.3 20 0.00043 40.1 9.2 72 454-530 15-86 (480)
50 PRK14106 murD UDP-N-acetylmura 70.9 30 0.00065 38.2 10.4 75 454-532 4-78 (450)
51 cd05005 SIS_PHI Hexulose-6-pho 68.9 57 0.0012 31.6 10.8 36 494-529 91-126 (179)
52 PLN02651 cysteine desulfurase 68.2 82 0.0018 33.7 12.8 102 454-561 60-173 (364)
53 PRK04311 selenocysteine syntha 67.7 81 0.0018 35.9 13.2 113 447-563 135-257 (464)
54 TIGR03127 RuMP_HxlB 6-phospho 67.1 65 0.0014 31.0 10.8 38 493-530 87-124 (179)
55 PRK11337 DNA-binding transcrip 66.4 90 0.0019 32.6 12.4 49 482-530 191-239 (292)
56 PRK09496 trkA potassium transp 65.9 62 0.0013 35.6 11.6 62 449-512 199-261 (453)
57 PRK09932 glycerate kinase II; 65.7 7.8 0.00017 43.1 4.5 62 493-568 267-328 (381)
58 TIGR01470 cysG_Nterm siroheme 65.0 51 0.0011 33.3 9.9 94 454-564 8-102 (205)
59 PF10087 DUF2325: Uncharacteri 64.7 31 0.00068 30.4 7.4 59 497-562 15-81 (97)
60 cd00532 MGS-like MGS-like doma 63.7 83 0.0018 28.5 10.1 86 467-567 14-110 (112)
61 PRK07582 cystathionine gamma-l 63.4 69 0.0015 34.8 11.2 99 454-561 65-167 (366)
62 TIGR03235 DNA_S_dndA cysteine 63.0 1.2E+02 0.0027 31.9 12.9 102 455-561 60-173 (353)
63 PRK00025 lpxB lipid-A-disaccha 62.9 97 0.0021 32.9 12.0 70 478-564 218-288 (380)
64 PF02142 MGS: MGS-like domain 62.5 12 0.00026 32.9 4.3 79 468-560 3-94 (95)
65 PRK08134 O-acetylhomoserine am 62.5 80 0.0017 35.5 11.8 96 457-561 82-184 (433)
66 cd06451 AGAT_like Alanine-glyo 62.1 1.1E+02 0.0025 32.1 12.3 98 456-561 51-159 (356)
67 TIGR02006 IscS cysteine desulf 62.0 1.5E+02 0.0032 32.3 13.5 103 454-561 64-177 (402)
68 cd06454 KBL_like KBL_like; thi 61.4 83 0.0018 32.7 11.0 101 451-561 58-167 (349)
69 TIGR03402 FeS_nifS cysteine de 61.3 1.3E+02 0.0028 32.1 12.7 102 454-561 59-171 (379)
70 cd03466 Nitrogenase_NifN_2 Nit 61.0 2.7E+02 0.0058 31.2 15.5 96 454-563 299-397 (429)
71 KOG3075 Ribose 5-phosphate iso 60.5 61 0.0013 34.5 9.6 119 442-571 29-151 (261)
72 PF05368 NmrA: NmrA-like famil 60.5 43 0.00093 33.2 8.4 99 458-565 1-103 (233)
73 TIGR01140 L_thr_O3P_dcar L-thr 60.3 68 0.0015 33.9 10.3 100 453-561 63-163 (330)
74 PF00535 Glycos_transf_2: Glyc 60.2 58 0.0013 28.8 8.5 81 457-537 3-94 (169)
75 PLN03209 translocon at the inn 60.2 33 0.00072 40.3 8.4 110 453-565 78-208 (576)
76 PF01488 Shikimate_DH: Shikima 60.2 42 0.00091 31.3 7.8 73 454-530 11-83 (135)
77 TIGR00045 glycerate kinase. Th 59.5 11 0.00024 41.9 4.3 50 517-568 278-327 (375)
78 PRK05613 O-acetylhomoserine am 58.6 96 0.0021 35.0 11.5 98 457-561 87-190 (437)
79 TIGR03458 YgfH_subfam succinat 57.9 1E+02 0.0022 35.6 11.7 116 446-562 6-155 (485)
80 PRK15116 sulfur acceptor prote 57.7 1.3E+02 0.0029 31.9 11.8 117 443-570 19-161 (268)
81 PRK01710 murD UDP-N-acetylmura 57.5 85 0.0018 35.2 10.9 72 455-530 14-85 (458)
82 PRK05839 hypothetical protein; 57.4 1.1E+02 0.0023 33.1 11.4 105 452-561 81-193 (374)
83 PLN02409 serine--glyoxylate am 57.3 95 0.0021 34.0 11.0 97 457-561 63-174 (401)
84 PRK12475 thiamine/molybdopteri 57.2 1E+02 0.0022 33.7 11.1 109 443-562 13-147 (338)
85 PRK10342 glycerate kinase I; P 57.1 14 0.00029 41.3 4.5 63 493-569 267-329 (381)
86 PRK08133 O-succinylhomoserine 57.1 1.4E+02 0.003 32.9 12.3 98 456-561 78-181 (390)
87 PF04016 DUF364: Domain of unk 56.8 31 0.00067 33.2 6.4 101 452-576 8-108 (147)
88 COG1929 Glycerate kinase [Carb 56.5 12 0.00027 41.3 4.0 51 516-568 278-328 (378)
89 PRK05414 urocanate hydratase; 56.4 85 0.0019 36.5 10.6 115 373-491 215-371 (556)
90 PRK15482 transcriptional regul 55.8 1.3E+02 0.0029 31.3 11.4 43 488-530 192-234 (285)
91 PLN02206 UDP-glucuronate decar 55.8 53 0.0012 36.9 8.9 109 454-566 118-235 (442)
92 COG4635 HemG Flavodoxin [Energ 55.6 12 0.00026 37.4 3.3 65 496-562 20-85 (175)
93 PTZ00433 tyrosine aminotransfe 54.8 1.1E+02 0.0024 33.4 11.1 103 452-561 102-215 (412)
94 PRK13938 phosphoheptose isomer 54.5 2.5E+02 0.0053 28.4 13.4 37 492-528 127-163 (196)
95 CHL00194 ycf39 Ycf39; Provisio 54.4 75 0.0016 33.3 9.3 102 457-565 2-110 (317)
96 COG1104 NifS Cysteine sulfinat 54.3 1.2E+02 0.0025 34.2 11.1 101 453-561 60-176 (386)
97 TIGR01329 cysta_beta_ly_E cyst 54.2 1.5E+02 0.0033 32.3 12.0 98 456-561 64-166 (378)
98 PRK07810 O-succinylhomoserine 54.1 1.9E+02 0.0042 32.0 12.9 98 456-561 87-190 (403)
99 PRK08574 cystathionine gamma-s 54.0 1.3E+02 0.0028 33.1 11.4 97 456-561 70-172 (385)
100 COG1737 RpiR Transcriptional r 53.5 1.8E+02 0.004 30.6 12.0 45 487-531 186-230 (281)
101 PF05159 Capsule_synth: Capsul 53.0 62 0.0014 33.3 8.3 93 457-566 131-228 (269)
102 cd01423 MGS_CPS_I_III Methylgl 52.5 46 0.00099 30.1 6.5 88 457-562 3-107 (116)
103 TIGR03392 FeS_syn_CsdA cystein 52.0 2.5E+02 0.0055 30.3 13.1 101 455-561 79-192 (398)
104 PRK08248 O-acetylhomoserine am 51.9 1.1E+02 0.0024 34.3 10.7 98 456-561 81-184 (431)
105 PRK10892 D-arabinose 5-phospha 51.8 3.1E+02 0.0067 29.1 13.5 63 497-566 65-131 (326)
106 TIGR01228 hutU urocanate hydra 51.7 1E+02 0.0023 35.7 10.2 115 373-491 206-362 (545)
107 PRK13520 L-tyrosine decarboxyl 51.7 2.4E+02 0.0052 29.7 12.7 100 455-561 77-186 (371)
108 PLN02260 probable rhamnose bio 51.6 62 0.0013 37.9 9.0 89 479-568 379-485 (668)
109 cd01974 Nitrogenase_MoFe_beta 51.3 4E+02 0.0086 29.9 17.5 94 454-563 302-402 (435)
110 PF01175 Urocanase: Urocanase; 50.9 97 0.0021 36.1 9.9 115 373-491 205-361 (546)
111 PRK05958 8-amino-7-oxononanoat 50.8 3.3E+02 0.0071 28.8 13.8 100 452-561 97-203 (385)
112 PRK15118 universal stress glob 50.8 1.4E+02 0.0031 27.1 9.5 35 522-562 103-137 (144)
113 COG1091 RfbD dTDP-4-dehydrorha 50.7 53 0.0011 35.3 7.5 96 458-572 3-108 (281)
114 TIGR01325 O_suc_HS_sulf O-succ 50.5 1.8E+02 0.0039 31.8 11.8 97 456-561 71-174 (380)
115 TIGR01979 sufS cysteine desulf 50.5 3.5E+02 0.0076 29.1 14.1 102 455-562 81-195 (403)
116 PF00148 Oxidored_nitro: Nitro 50.5 3.7E+02 0.008 29.3 16.6 106 440-563 258-366 (398)
117 PRK10874 cysteine sulfinate de 50.2 3.1E+02 0.0068 29.6 13.5 101 455-561 82-195 (401)
118 cd00287 ribokinase_pfkB_like r 49.9 51 0.0011 31.2 6.7 69 478-563 23-91 (196)
119 PLN02778 3,5-epimerase/4-reduc 49.7 77 0.0017 33.3 8.5 26 540-565 86-111 (298)
120 PF02595 Gly_kinase: Glycerate 49.3 10 0.00022 42.2 2.0 52 516-569 278-329 (377)
121 PLN02656 tyrosine transaminase 49.3 2.1E+02 0.0047 31.2 12.2 97 452-561 94-207 (409)
122 PRK09331 Sep-tRNA:Cys-tRNA syn 49.2 1.8E+02 0.0038 31.7 11.4 15 547-561 179-193 (387)
123 cd06453 SufS_like Cysteine des 49.2 2.6E+02 0.0057 29.6 12.6 101 456-562 63-175 (373)
124 cd01972 Nitrogenase_VnfE_like 49.2 4.2E+02 0.0091 29.6 14.6 95 454-562 292-399 (426)
125 PRK11302 DNA-binding transcrip 49.0 2.6E+02 0.0056 28.8 12.1 46 483-529 180-225 (284)
126 cd01973 Nitrogenase_VFe_beta_l 48.6 4.6E+02 0.0099 29.9 15.5 150 394-566 258-410 (454)
127 cd00614 CGS_like CGS_like: Cys 48.3 1.4E+02 0.0029 32.4 10.4 97 456-561 57-160 (369)
128 PRK05749 3-deoxy-D-manno-octul 48.0 1.2E+02 0.0027 33.0 10.0 97 454-563 49-154 (425)
129 PRK06702 O-acetylhomoserine am 47.9 2.1E+02 0.0045 32.4 12.0 97 457-561 79-182 (432)
130 PRK07812 O-acetylhomoserine am 47.9 1.7E+02 0.0037 33.0 11.4 97 457-561 87-190 (436)
131 PRK12320 hypothetical protein; 47.9 39 0.00084 40.6 6.5 99 457-565 2-103 (699)
132 cd01494 AAT_I Aspartate aminot 47.6 2.1E+02 0.0046 25.7 11.0 100 453-561 16-127 (170)
133 smart00851 MGS MGS-like domain 47.3 1.5E+02 0.0033 25.5 8.7 78 469-560 4-89 (90)
134 PRK14012 cysteine desulfurase; 47.2 4.1E+02 0.0089 28.9 14.6 101 456-561 68-179 (404)
135 PLN02591 tryptophan synthase 46.6 2.2E+02 0.0048 30.0 11.2 102 456-562 81-195 (250)
136 PF00266 Aminotran_5: Aminotra 46.5 2E+02 0.0042 30.8 11.1 101 455-561 62-174 (371)
137 cd01965 Nitrogenase_MoFe_beta_ 46.3 4.6E+02 0.01 29.2 15.8 99 454-563 298-396 (428)
138 cd04235 AAK_CK AAK_CK: Carbama 46.0 3E+02 0.0066 30.0 12.4 49 514-562 172-228 (308)
139 PF01113 DapB_N: Dihydrodipico 46.0 43 0.00092 30.9 5.3 96 457-566 2-101 (124)
140 PRK09295 bifunctional cysteine 46.0 2.9E+02 0.0063 30.0 12.5 101 455-561 86-199 (406)
141 PRK12454 carbamate kinase-like 45.9 2.4E+02 0.0052 30.9 11.6 49 514-562 176-232 (313)
142 PRK05764 aspartate aminotransf 45.6 2E+02 0.0044 30.8 11.1 96 452-561 89-202 (393)
143 TIGR02371 ala_DH_arch alanine 45.6 1.4E+02 0.003 32.3 9.8 97 448-547 119-225 (325)
144 PRK08462 biotin carboxylase; V 45.4 45 0.00098 37.0 6.3 80 456-537 5-91 (445)
145 PRK14101 bifunctional glucokin 45.2 2.2E+02 0.0047 33.6 12.1 45 483-528 520-564 (638)
146 cd00609 AAT_like Aspartate ami 45.1 1.2E+02 0.0026 31.0 9.0 102 454-562 59-171 (350)
147 COG3109 ProQ Activator of osmo 45.1 34 0.00073 34.6 4.6 24 197-220 103-126 (208)
148 TIGR03590 PseG pseudaminic aci 45.1 2.3E+02 0.005 29.6 11.2 91 456-564 172-268 (279)
149 PRK05234 mgsA methylglyoxal sy 45.1 1.6E+02 0.0035 28.3 9.2 88 467-565 19-115 (142)
150 PRK07568 aspartate aminotransf 45.0 2.1E+02 0.0046 30.7 11.2 95 453-561 87-200 (397)
151 cd05006 SIS_GmhA Phosphoheptos 44.9 2.9E+02 0.0064 26.6 11.7 44 487-530 110-153 (177)
152 PRK13479 2-aminoethylphosphona 44.9 3.2E+02 0.007 29.0 12.4 98 456-561 57-166 (368)
153 PRK09028 cystathionine beta-ly 44.8 2E+02 0.0044 32.0 11.2 94 456-561 78-181 (394)
154 COG0279 GmhA Phosphoheptose is 44.6 3.5E+02 0.0076 27.4 11.5 66 451-526 106-174 (176)
155 PF03709 OKR_DC_1_N: Orn/Lys/A 44.3 34 0.00073 31.3 4.3 67 495-566 7-77 (115)
156 PF02844 GARS_N: Phosphoribosy 44.1 87 0.0019 28.7 6.8 86 457-560 2-90 (100)
157 CHL00144 odpB pyruvate dehydro 44.0 79 0.0017 34.3 7.7 68 498-570 220-299 (327)
158 cd01987 USP_OKCHK USP domain i 43.7 2.3E+02 0.0049 24.9 10.6 61 499-562 56-123 (124)
159 PLN02683 pyruvate dehydrogenas 43.7 84 0.0018 34.6 7.9 86 450-564 223-320 (356)
160 PRK10481 hypothetical protein; 43.7 1.4E+02 0.003 31.1 9.0 86 470-561 121-211 (224)
161 PRK08056 threonine-phosphate d 43.5 2.4E+02 0.0052 30.1 11.3 94 452-561 70-180 (356)
162 TIGR01326 OAH_OAS_sulfhy OAH/O 43.4 3E+02 0.0065 30.5 12.3 97 456-561 74-177 (418)
163 COG0451 WcaG Nucleoside-diphos 43.3 67 0.0015 32.6 6.8 100 458-565 3-116 (314)
164 cd06450 DOPA_deC_like DOPA dec 43.3 4E+02 0.0088 27.7 12.9 100 455-561 58-183 (345)
165 cd01988 Na_H_Antiporter_C The 43.3 2.3E+02 0.0049 24.8 11.2 60 500-562 64-131 (132)
166 PRK05678 succinyl-CoA syntheta 43.2 1.6E+02 0.0035 31.7 9.8 103 456-560 67-173 (291)
167 PRK07865 N-succinyldiaminopime 43.2 1.5E+02 0.0033 31.6 9.7 94 452-561 84-186 (364)
168 TIGR01328 met_gam_lyase methio 43.2 2.6E+02 0.0057 30.8 11.7 97 457-561 77-179 (391)
169 TIGR01977 am_tr_V_EF2568 cyste 43.1 4.3E+02 0.0093 28.0 13.7 98 456-561 64-172 (376)
170 PF04392 ABC_sub_bind: ABC tra 43.1 15 0.00033 38.3 2.0 39 521-566 183-221 (294)
171 PRK05968 hypothetical protein; 42.9 2.9E+02 0.0063 30.3 12.0 98 456-561 80-182 (389)
172 PRK07309 aromatic amino acid a 42.5 2.6E+02 0.0056 30.3 11.4 101 454-561 91-204 (391)
173 PRK05647 purN phosphoribosylgl 42.1 1E+02 0.0022 31.1 7.7 76 457-535 5-94 (200)
174 TIGR03539 DapC_actino succinyl 41.6 1.5E+02 0.0031 31.7 9.2 94 452-561 78-180 (357)
175 TIGR02429 pcaI_scoA_fam 3-oxoa 41.3 2E+02 0.0044 29.8 9.8 97 447-562 11-122 (222)
176 TIGR03538 DapC_gpp succinyldia 41.2 2.4E+02 0.0052 30.5 10.9 94 456-561 92-203 (393)
177 TIGR00639 PurN phosphoribosylg 41.1 1.4E+02 0.0031 29.9 8.5 70 457-529 4-86 (190)
178 PRK07178 pyruvate carboxylase 40.8 62 0.0013 36.6 6.6 82 456-537 3-88 (472)
179 TIGR03217 4OH_2_O_val_ald 4-hy 40.7 78 0.0017 34.5 7.1 65 457-521 105-172 (333)
180 PRK03369 murD UDP-N-acetylmura 40.5 1.6E+02 0.0035 33.4 9.8 90 452-560 9-98 (488)
181 TIGR03537 DapC succinyldiamino 40.4 2.5E+02 0.0055 29.8 10.8 99 452-561 57-174 (350)
182 PLN02214 cinnamoyl-CoA reducta 40.3 2.1E+02 0.0045 30.6 10.1 107 454-562 9-124 (342)
183 PTZ00187 succinyl-CoA syntheta 40.3 1.2E+02 0.0027 33.1 8.4 103 456-561 90-198 (317)
184 COG0794 GutQ Predicted sugar p 40.2 3.2E+02 0.0069 28.2 10.8 95 427-528 18-136 (202)
185 TIGR02326 transamin_PhnW 2-ami 40.1 4E+02 0.0087 28.3 12.2 98 457-561 57-164 (363)
186 cd06436 GlcNAc-1-P_transferase 40.1 98 0.0021 29.8 7.0 30 458-487 3-32 (191)
187 PRK09288 purT phosphoribosylgl 39.8 71 0.0015 34.6 6.6 72 456-533 13-86 (395)
188 PRK07683 aminotransferase A; V 39.7 2.8E+02 0.0061 30.0 11.2 93 456-561 91-199 (387)
189 PRK08861 cystathionine gamma-s 39.6 2.4E+02 0.0052 31.3 10.7 98 456-561 70-173 (388)
190 PRK07503 methionine gamma-lyas 39.4 3.1E+02 0.0067 30.3 11.6 97 457-561 83-185 (403)
191 PRK13566 anthranilate synthase 39.2 1E+02 0.0022 37.3 8.2 80 477-563 523-605 (720)
192 PRK07504 O-succinylhomoserine 39.0 3.3E+02 0.0071 30.1 11.7 74 482-561 106-185 (398)
193 PLN02166 dTDP-glucose 4,6-dehy 38.3 1.4E+02 0.003 33.6 8.7 108 454-565 119-235 (436)
194 cd01980 Chlide_reductase_Y Chl 38.3 4.4E+02 0.0095 29.4 12.6 112 431-564 260-376 (416)
195 PF13580 SIS_2: SIS domain; PD 38.2 60 0.0013 30.4 5.1 28 452-479 101-131 (138)
196 TIGR01142 purT phosphoribosylg 38.1 84 0.0018 33.8 6.8 72 457-534 1-74 (380)
197 PRK13789 phosphoribosylamine-- 38.1 59 0.0013 36.5 5.8 77 456-537 5-83 (426)
198 KOG3349 Predicted glycosyltran 37.9 51 0.0011 32.8 4.6 54 449-506 75-128 (170)
199 TIGR00853 pts-lac PTS system, 37.9 1.2E+02 0.0026 27.1 6.7 77 456-563 4-82 (95)
200 PRK08045 cystathionine gamma-s 37.9 3.5E+02 0.0077 29.8 11.7 98 456-561 69-172 (386)
201 PRK06234 methionine gamma-lyas 37.9 3.8E+02 0.0082 29.6 12.0 98 456-561 81-186 (400)
202 COG0771 MurD UDP-N-acetylmuram 37.6 1.1E+02 0.0023 35.1 7.7 92 455-561 7-98 (448)
203 cd01483 E1_enzyme_family Super 37.5 2.3E+02 0.005 26.2 8.8 97 458-564 2-122 (143)
204 PF04321 RmlD_sub_bind: RmlD s 37.5 51 0.0011 34.5 4.9 97 457-571 2-108 (286)
205 PRK10537 voltage-gated potassi 37.4 5.8E+02 0.013 28.6 13.3 92 455-565 240-338 (393)
206 TIGR01019 sucCoAalpha succinyl 37.4 2.2E+02 0.0047 30.6 9.6 103 456-560 65-171 (286)
207 PRK12767 carbamoyl phosphate s 37.3 45 0.00097 34.9 4.5 41 457-498 3-43 (326)
208 PRK11543 gutQ D-arabinose 5-ph 37.2 4.9E+02 0.011 27.4 12.3 37 493-529 104-140 (321)
209 PRK13527 glutamine amidotransf 37.0 81 0.0018 31.3 6.0 83 481-568 3-89 (200)
210 PRK02910 light-independent pro 36.8 7.2E+02 0.016 28.7 16.5 92 454-563 292-387 (519)
211 TIGR03499 FlhF flagellar biosy 36.6 5.4E+02 0.012 27.2 14.4 76 452-528 191-278 (282)
212 TIGR02356 adenyl_thiF thiazole 36.5 3.4E+02 0.0073 27.2 10.4 109 444-563 11-143 (202)
213 PRK06836 aspartate aminotransf 36.5 3.7E+02 0.008 29.2 11.5 103 452-561 94-212 (394)
214 PRK09136 5'-methylthioadenosin 36.3 1.5E+02 0.0033 31.0 8.1 76 459-566 127-206 (245)
215 PRK07765 para-aminobenzoate sy 36.3 1.7E+02 0.0037 29.7 8.3 79 482-566 2-86 (214)
216 TIGR01181 dTDP_gluc_dehyt dTDP 36.2 1.4E+02 0.003 30.3 7.8 107 458-564 2-125 (317)
217 TIGR03576 pyridox_MJ0158 pyrid 36.2 5.9E+02 0.013 27.6 15.2 135 419-561 36-173 (346)
218 PRK08762 molybdopterin biosynt 35.6 4.9E+02 0.011 28.6 12.3 108 444-562 125-256 (376)
219 PRK05562 precorrin-2 dehydroge 35.5 2.7E+02 0.0058 29.0 9.6 95 454-564 24-118 (223)
220 PRK08175 aminotransferase; Val 35.3 98 0.0021 33.5 6.8 99 456-561 93-202 (395)
221 PRK07050 cystathionine beta-ly 35.3 4.9E+02 0.011 28.7 12.3 98 457-561 83-185 (394)
222 PRK13936 phosphoheptose isomer 35.3 4.7E+02 0.01 26.1 14.6 36 495-530 128-166 (197)
223 cd00611 PSAT_like Phosphoserin 35.3 4.2E+02 0.0091 28.5 11.6 94 455-561 63-168 (355)
224 PRK02705 murD UDP-N-acetylmura 35.2 2.3E+02 0.0049 31.5 9.8 71 458-530 3-76 (459)
225 PLN02828 formyltetrahydrofolat 35.1 1.4E+02 0.003 32.0 7.6 73 456-529 73-154 (268)
226 PRK13111 trpA tryptophan synth 35.1 5.3E+02 0.011 27.2 11.9 101 456-562 92-206 (258)
227 PRK15181 Vi polysaccharide bio 35.0 1.6E+02 0.0035 31.4 8.3 109 453-563 13-140 (348)
228 PRK08591 acetyl-CoA carboxylas 34.9 1.2E+02 0.0026 33.6 7.6 80 456-537 3-89 (451)
229 TIGR01214 rmlD dTDP-4-dehydror 34.8 1E+02 0.0022 31.2 6.6 27 540-566 76-102 (287)
230 PRK05443 polyphosphate kinase; 34.8 1.1E+02 0.0023 37.0 7.4 52 461-512 376-429 (691)
231 PRK05967 cystathionine beta-ly 34.7 3.6E+02 0.0077 30.2 11.1 98 456-561 81-184 (395)
232 PLN02187 rooty/superroot1 34.7 4.1E+02 0.0088 30.0 11.7 103 452-561 129-242 (462)
233 PRK05784 phosphoribosylamine-- 34.5 53 0.0011 37.7 4.8 77 457-534 2-81 (486)
234 PRK05597 molybdopterin biosynt 34.3 3.7E+02 0.0081 29.5 11.1 108 444-562 18-149 (355)
235 PRK10310 PTS system galactitol 34.2 1.5E+02 0.0033 26.3 6.7 54 457-531 4-59 (94)
236 PRK06108 aspartate aminotransf 34.2 3.7E+02 0.0081 28.5 10.9 96 452-561 82-196 (382)
237 PRK06225 aspartate aminotransf 34.2 3.1E+02 0.0068 29.4 10.4 102 453-561 82-195 (380)
238 TIGR01133 murG undecaprenyldip 34.1 3.2E+02 0.0069 28.3 10.2 53 496-562 223-276 (348)
239 cd00615 Orn_deC_like Ornithine 34.1 4.6E+02 0.01 27.3 11.4 96 456-562 76-189 (294)
240 PRK13937 phosphoheptose isomer 34.0 4.7E+02 0.01 25.8 12.5 35 495-529 123-157 (188)
241 PRK08618 ornithine cyclodeamin 34.0 2.6E+02 0.0057 30.0 9.7 89 454-546 126-223 (325)
242 PLN02695 GDP-D-mannose-3',5'-e 34.0 1.9E+02 0.0041 31.4 8.7 108 450-565 16-137 (370)
243 PRK11892 pyruvate dehydrogenas 34.0 1.7E+02 0.0037 33.5 8.7 66 498-568 359-436 (464)
244 TIGR00858 bioF 8-amino-7-oxono 33.9 4.5E+02 0.0097 27.3 11.2 93 456-561 78-181 (360)
245 cd01491 Ube1_repeat1 Ubiquitin 33.8 2.6E+02 0.0056 30.1 9.5 113 444-568 9-141 (286)
246 PTZ00182 3-methyl-2-oxobutanat 33.6 2.3E+02 0.005 31.2 9.4 49 516-569 278-330 (355)
247 COG2014 Uncharacterized conser 33.6 72 0.0016 33.4 5.0 100 448-572 106-206 (250)
248 PRK07324 transaminase; Validat 33.6 2.7E+02 0.006 30.0 9.9 103 452-561 78-191 (373)
249 PRK05957 aspartate aminotransf 33.5 4.3E+02 0.0094 28.6 11.4 93 455-561 90-198 (389)
250 TIGR00215 lpxB lipid-A-disacch 33.4 4.3E+02 0.0093 29.0 11.4 42 505-562 251-292 (385)
251 PLN02331 phosphoribosylglycina 33.2 2E+02 0.0044 29.4 8.2 70 457-529 3-85 (207)
252 TIGR02080 O_succ_thio_ly O-suc 33.2 4.3E+02 0.0093 29.1 11.4 98 456-561 68-171 (382)
253 COG0855 Ppk Polyphosphate kina 33.2 99 0.0021 37.0 6.6 44 467-511 386-432 (696)
254 PF13241 NAD_binding_7: Putati 33.1 85 0.0018 27.9 5.0 86 454-562 6-91 (103)
255 PRK06141 ornithine cyclodeamin 33.0 3.3E+02 0.007 29.2 10.2 90 454-546 124-221 (314)
256 TIGR03609 S_layer_CsaB polysac 33.0 1.3E+02 0.0027 31.4 7.0 81 479-566 27-109 (298)
257 PRK05690 molybdopterin biosynt 32.8 5.8E+02 0.013 26.4 12.4 110 443-562 21-153 (245)
258 PF00582 Usp: Universal stress 32.6 3.2E+02 0.0068 23.3 10.5 38 522-562 102-139 (140)
259 cd05017 SIS_PGI_PMI_1 The memb 32.4 1E+02 0.0022 27.9 5.5 53 505-564 26-78 (119)
260 TIGR01110 mdcA malonate decarb 32.4 4.4E+02 0.0094 31.1 11.4 134 426-564 12-182 (543)
261 cd05564 PTS_IIB_chitobiose_lic 32.4 1.4E+02 0.0029 26.6 6.1 57 497-562 19-77 (96)
262 PRK08912 hypothetical protein; 32.3 5.8E+02 0.012 27.4 12.1 92 456-561 89-197 (387)
263 PRK07550 hypothetical protein; 32.3 4.4E+02 0.0095 28.3 11.1 102 452-561 88-201 (386)
264 TIGR02931 anfK_nitrog Fe-only 32.3 8E+02 0.017 27.9 15.9 147 393-562 264-412 (461)
265 PF08659 KR: KR domain; Inter 32.3 4.2E+02 0.0091 25.6 10.1 107 458-566 3-137 (181)
266 cd05212 NAD_bind_m-THF_DH_Cycl 32.0 1.9E+02 0.0041 27.8 7.4 43 488-530 35-79 (140)
267 PRK08644 thiamine biosynthesis 31.8 5.4E+02 0.012 26.1 11.1 111 443-564 17-151 (212)
268 PRK03244 argD acetylornithine 31.6 6E+02 0.013 27.4 12.1 101 456-561 105-222 (398)
269 PRK08249 cystathionine gamma-s 31.6 4.2E+02 0.0091 29.4 11.0 98 456-561 81-184 (398)
270 PRK14478 nitrogenase molybdenu 31.6 7.4E+02 0.016 28.3 13.2 141 396-562 271-417 (475)
271 PRK14852 hypothetical protein; 31.6 5.4E+02 0.012 32.6 12.8 130 426-564 304-457 (989)
272 COG0074 SucD Succinyl-CoA synt 31.5 2.2E+02 0.0048 31.0 8.4 103 456-560 67-173 (293)
273 COG2057 AtoA Acyl CoA:acetate/ 31.5 65 0.0014 33.7 4.4 121 440-567 7-150 (225)
274 PRK12452 cardiolipin synthetas 31.5 2.9E+02 0.0063 31.9 10.0 80 457-550 361-447 (509)
275 PRK07340 ornithine cyclodeamin 31.4 3.4E+02 0.0074 29.0 10.0 95 448-546 116-219 (304)
276 cd06433 GT_2_WfgS_like WfgS an 31.3 3.2E+02 0.0069 25.2 8.7 47 457-503 3-50 (202)
277 PRK15029 arginine decarboxylas 31.2 1.7E+02 0.0038 35.6 8.5 83 482-567 2-96 (755)
278 TIGR03589 PseB UDP-N-acetylglu 31.1 2.6E+02 0.0056 29.6 9.0 109 454-565 3-125 (324)
279 PRK06084 O-acetylhomoserine am 31.0 3.4E+02 0.0074 30.4 10.3 97 457-561 76-178 (425)
280 PRK00421 murC UDP-N-acetylmura 30.7 2.3E+02 0.005 31.7 9.0 68 454-530 6-74 (461)
281 CHL00041 rps11 ribosomal prote 30.7 97 0.0021 29.0 5.0 45 467-514 62-108 (116)
282 COG1648 CysG Siroheme synthase 30.6 1.9E+02 0.0041 29.6 7.6 94 454-563 11-104 (210)
283 PRK06348 aspartate aminotransf 30.6 3.8E+02 0.0083 28.9 10.4 103 452-561 87-200 (384)
284 cd00757 ThiF_MoeB_HesA_family 30.5 3.3E+02 0.0071 27.7 9.3 108 444-562 11-142 (228)
285 TIGR00441 gmhA phosphoheptose 30.4 1.1E+02 0.0025 29.1 5.7 29 449-477 74-105 (154)
286 COG0424 Maf Nucleotide-binding 30.4 1.4E+02 0.003 30.6 6.4 72 468-550 15-91 (193)
287 PLN02855 Bifunctional selenocy 30.4 7.1E+02 0.015 27.2 12.5 101 455-561 95-208 (424)
288 PRK09147 succinyldiaminopimela 30.4 3.8E+02 0.0082 29.0 10.3 94 456-561 92-204 (396)
289 TIGR01825 gly_Cac_T_rel pyrido 30.3 4.5E+02 0.0097 28.0 10.7 16 546-561 183-198 (385)
290 PRK05939 hypothetical protein; 30.3 4.8E+02 0.01 28.9 11.2 94 456-561 64-166 (397)
291 PLN00143 tyrosine/nicotianamin 30.2 5.2E+02 0.011 28.3 11.4 107 441-561 80-208 (409)
292 PRK08960 hypothetical protein; 30.1 3.7E+02 0.0081 28.9 10.2 96 452-561 90-203 (387)
293 KOG1549 Cysteine desulfurase N 30.1 9E+02 0.019 27.8 13.9 109 450-561 96-216 (428)
294 PRK07688 thiamine/molybdopteri 30.1 5.6E+02 0.012 28.0 11.5 110 443-563 13-148 (339)
295 cd02525 Succinoglycan_BP_ExoA 30.0 1.7E+02 0.0037 28.3 7.0 56 457-512 5-63 (249)
296 cd01485 E1-1_like Ubiquitin ac 29.9 5.5E+02 0.012 25.7 10.6 108 444-562 9-144 (198)
297 TIGR01264 tyr_amTase_E tyrosin 29.8 4.5E+02 0.0097 28.5 10.8 96 452-561 93-206 (401)
298 PRK15005 universal stress prot 29.7 1.4E+02 0.003 27.0 5.8 36 522-562 107-143 (144)
299 PRK08064 cystathionine beta-ly 29.2 7.3E+02 0.016 27.3 12.4 97 456-561 71-173 (390)
300 PRK03803 murD UDP-N-acetylmura 29.1 3.3E+02 0.0071 30.3 9.8 75 453-535 4-80 (448)
301 PF01053 Cys_Met_Meta_PP: Cys/ 29.0 4.2E+02 0.0092 29.5 10.5 103 452-561 67-176 (386)
302 PRK06460 hypothetical protein; 28.9 6.9E+02 0.015 27.3 12.1 58 500-561 104-165 (376)
303 TIGR01814 kynureninase kynuren 28.7 5.8E+02 0.013 27.8 11.4 103 454-561 86-206 (406)
304 PRK00048 dihydrodipicolinate r 28.6 2.2E+02 0.0047 29.6 7.8 87 457-562 3-90 (257)
305 PRK08114 cystathionine beta-ly 28.6 5E+02 0.011 29.1 11.0 100 452-561 74-184 (395)
306 PRK05994 O-acetylhomoserine am 28.6 5.6E+02 0.012 28.6 11.5 96 457-561 81-183 (427)
307 PRK08361 aspartate aminotransf 28.5 5.6E+02 0.012 27.6 11.2 103 452-561 91-204 (391)
308 PRK13011 formyltetrahydrofolat 28.5 1.6E+02 0.0035 31.5 6.9 68 456-529 92-172 (286)
309 KOG1430 C-3 sterol dehydrogena 28.5 4.3E+02 0.0092 29.6 10.3 107 455-566 4-127 (361)
310 PRK07681 aspartate aminotransf 28.5 4.5E+02 0.0098 28.5 10.5 100 455-561 94-204 (399)
311 PRK02472 murD UDP-N-acetylmura 28.5 3.9E+02 0.0084 29.5 10.1 71 455-530 5-76 (447)
312 COG1737 RpiR Transcriptional r 28.3 1.9E+02 0.0042 30.4 7.4 111 423-566 98-214 (281)
313 PF02302 PTS_IIB: PTS system, 28.3 1.6E+02 0.0034 25.0 5.6 35 499-533 22-58 (90)
314 PRK09987 dTDP-4-dehydrorhamnos 28.3 1.4E+02 0.0031 31.0 6.5 95 457-568 2-108 (299)
315 PRK12771 putative glutamate sy 28.2 4.4E+02 0.0095 30.4 10.9 78 452-531 134-231 (564)
316 PRK00726 murG undecaprenyldiph 28.1 6.5E+02 0.014 26.4 11.4 93 455-564 183-280 (357)
317 PRK00207 sulfur transfer compl 27.9 1.9E+02 0.0041 27.2 6.6 72 483-566 4-82 (128)
318 TIGR01521 FruBisAldo_II_B fruc 27.8 2E+02 0.0043 32.0 7.6 104 455-561 15-139 (347)
319 PRK09191 two-component respons 27.8 4.9E+02 0.011 25.8 10.0 93 465-564 119-218 (261)
320 COG0608 RecJ Single-stranded D 27.8 2E+02 0.0044 32.8 8.0 77 441-519 22-103 (491)
321 PRK12727 flagellar biosynthesi 27.7 7.5E+02 0.016 29.4 12.4 81 450-530 345-436 (559)
322 PLN02918 pyridoxine (pyridoxam 27.7 1.1E+03 0.023 28.0 15.9 96 437-537 115-217 (544)
323 TIGR01324 cysta_beta_ly_B cyst 27.6 5.9E+02 0.013 28.0 11.3 94 456-561 67-170 (377)
324 TIGR03492 conserved hypothetic 27.5 6.1E+02 0.013 28.0 11.4 33 515-562 289-321 (396)
325 PRK07777 aminotransferase; Val 27.4 7.5E+02 0.016 26.6 11.9 99 456-561 87-197 (387)
326 PRK09196 fructose-1,6-bisphosp 27.4 2E+02 0.0042 32.0 7.4 95 463-560 27-140 (347)
327 PLN02735 carbamoyl-phosphate s 27.2 3.7E+02 0.008 34.2 10.7 96 455-565 973-1077(1102)
328 PRK12655 fructose-6-phosphate 27.1 5.8E+02 0.013 26.4 10.4 97 464-567 62-168 (220)
329 TIGR00441 gmhA phosphoheptose 27.1 3.8E+02 0.0082 25.5 8.6 39 520-565 77-115 (154)
330 PRK07589 ornithine cyclodeamin 27.0 4.9E+02 0.011 28.7 10.4 98 447-547 119-228 (346)
331 PLN02896 cinnamyl-alcohol dehy 27.0 6.3E+02 0.014 26.8 11.1 108 454-565 9-138 (353)
332 PF01451 LMWPc: Low molecular 26.8 98 0.0021 28.5 4.4 70 462-531 10-85 (138)
333 PF04413 Glycos_transf_N: 3-De 26.7 2E+02 0.0043 28.6 6.8 96 456-565 22-127 (186)
334 cd05017 SIS_PGI_PMI_1 The memb 26.6 1.9E+02 0.0041 26.2 6.1 58 451-515 40-100 (119)
335 PRK02006 murD UDP-N-acetylmura 26.5 3.7E+02 0.0081 30.4 9.8 71 455-530 7-77 (498)
336 PRK08363 alanine aminotransfer 26.2 4.3E+02 0.0094 28.6 9.9 40 453-496 92-131 (398)
337 PLN02662 cinnamyl-alcohol dehy 26.0 5.1E+02 0.011 26.6 10.0 107 455-565 4-127 (322)
338 TIGR02434 CobF precorrin-6A sy 25.9 2.8E+02 0.006 29.1 8.0 24 539-563 183-206 (249)
339 PRK13143 hisH imidazole glycer 25.8 2.9E+02 0.0063 27.5 7.9 83 482-570 2-85 (200)
340 PRK06939 2-amino-3-ketobutyrat 25.8 2.4E+02 0.0052 30.0 7.7 28 538-566 182-213 (397)
341 PRK08247 cystathionine gamma-s 25.8 8.6E+02 0.019 26.3 12.1 100 457-566 70-175 (366)
342 PRK06111 acetyl-CoA carboxylas 25.8 1.4E+02 0.003 33.1 6.0 32 457-490 4-35 (450)
343 cd00640 Trp-synth-beta_II Tryp 25.7 4.5E+02 0.0097 26.5 9.3 56 455-514 50-105 (244)
344 PF05185 PRMT5: PRMT5 arginine 25.7 1.9E+02 0.0041 33.0 7.2 71 455-527 187-263 (448)
345 PRK00885 phosphoribosylamine-- 25.6 1.8E+02 0.0039 32.0 7.0 70 457-533 2-73 (420)
346 PRK07049 methionine gamma-lyas 25.6 7.6E+02 0.016 27.7 11.8 55 455-513 99-155 (427)
347 cd01748 GATase1_IGP_Synthase T 25.6 2.1E+02 0.0045 28.2 6.7 69 496-567 13-82 (198)
348 PLN00175 aminotransferase fami 25.5 7.6E+02 0.016 27.2 11.7 92 456-561 117-225 (413)
349 TIGR01777 yfcH conserved hypot 25.4 2.1E+02 0.0045 28.8 6.8 92 458-558 1-103 (292)
350 TIGR03693 ocin_ThiF_like putat 25.4 4.9E+02 0.011 31.3 10.5 99 454-560 128-235 (637)
351 PRK06767 methionine gamma-lyas 25.4 7.5E+02 0.016 27.1 11.6 98 456-561 78-181 (386)
352 PF01380 SIS: SIS domain SIS d 25.3 1.3E+02 0.0028 26.7 4.8 39 492-530 67-105 (131)
353 PRK07366 succinyldiaminopimela 25.3 5.9E+02 0.013 27.4 10.7 51 456-512 94-144 (388)
354 PRK05749 3-deoxy-D-manno-octul 25.3 3.8E+02 0.0083 29.1 9.3 76 477-562 259-350 (425)
355 cd03807 GT1_WbnK_like This fam 25.2 6.2E+02 0.013 25.1 10.1 95 456-561 194-297 (365)
356 cd06452 SepCysS Sep-tRNA:Cys-t 25.2 8.4E+02 0.018 25.9 11.8 96 456-561 61-174 (361)
357 TIGR01426 MGT glycosyltransfer 25.2 1.8E+02 0.0039 31.3 6.7 32 529-566 92-123 (392)
358 COG3980 spsG Spore coat polysa 25.2 4.4E+02 0.0094 29.0 9.3 91 455-563 159-253 (318)
359 PF02550 AcetylCoA_hydro: Acet 25.1 2.9E+02 0.0064 27.5 7.7 109 445-554 12-156 (198)
360 PLN00145 tyrosine/nicotianamin 25.1 3.3E+02 0.0071 30.3 8.9 54 452-511 115-168 (430)
361 PF06574 FAD_syn: FAD syntheta 25.1 3.3E+02 0.0072 26.4 7.9 103 456-562 6-143 (157)
362 cd03822 GT1_ecORF704_like This 25.0 4.7E+02 0.01 26.4 9.3 99 454-561 184-298 (366)
363 PF13460 NAD_binding_10: NADH( 24.9 2.8E+02 0.0062 26.0 7.3 98 458-569 1-102 (183)
364 PF13685 Fe-ADH_2: Iron-contai 24.9 37 0.00081 35.6 1.4 71 491-565 32-108 (250)
365 PRK15456 universal stress prot 24.9 2.1E+02 0.0045 26.1 6.2 37 522-562 105-141 (142)
366 PLN00203 glutamyl-tRNA reducta 24.8 4E+02 0.0086 31.1 9.6 71 455-529 266-336 (519)
367 PRK06719 precorrin-2 dehydroge 24.8 3.3E+02 0.0071 26.4 7.7 90 454-563 12-101 (157)
368 PRK00451 glycine dehydrogenase 24.7 9.6E+02 0.021 26.4 13.1 98 456-561 131-238 (447)
369 PRK01362 putative translaldola 24.7 7.1E+02 0.015 25.7 10.5 66 464-535 60-128 (214)
370 PLN02509 cystathionine beta-ly 24.6 8.4E+02 0.018 27.9 12.1 81 469-561 162-252 (464)
371 TIGR01963 PHB_DH 3-hydroxybuty 24.6 4.4E+02 0.0096 25.8 8.9 104 456-563 2-135 (255)
372 PLN02242 methionine gamma-lyas 24.6 5.6E+02 0.012 28.7 10.5 99 456-561 93-198 (418)
373 COG0373 HemA Glutamyl-tRNA red 24.5 2.6E+02 0.0057 31.8 7.9 71 454-531 177-247 (414)
374 PRK08195 4-hyroxy-2-oxovalerat 24.5 3.2E+02 0.0069 29.9 8.4 63 457-519 106-171 (337)
375 COG0031 CysK Cysteine synthase 24.4 1.8E+02 0.0039 31.7 6.4 176 345-530 70-264 (300)
376 PRK00377 cbiT cobalt-precorrin 24.4 3E+02 0.0065 27.0 7.6 76 451-529 37-118 (198)
377 PF01135 PCMT: Protein-L-isoas 24.3 1.6E+02 0.0034 30.1 5.7 75 452-530 70-149 (209)
378 COG2987 HutU Urocanate hydrata 24.1 7.1E+02 0.015 29.1 11.0 113 375-491 217-371 (561)
379 TIGR00644 recJ single-stranded 24.1 3.3E+02 0.0072 31.6 8.9 72 448-519 47-125 (539)
380 PRK08506 replicative DNA helic 24.0 4.3E+02 0.0093 30.2 9.6 38 453-490 190-232 (472)
381 PRK04308 murD UDP-N-acetylmura 23.9 5.3E+02 0.012 28.6 10.2 69 455-530 5-75 (445)
382 PRK13399 fructose-1,6-bisphosp 23.9 2.5E+02 0.0055 31.1 7.5 95 463-560 27-140 (347)
383 PF01118 Semialdhyde_dh: Semia 23.9 2E+02 0.0043 26.1 5.8 107 457-574 1-108 (121)
384 CHL00076 chlB photochlorophyll 23.8 1.2E+03 0.025 27.1 17.3 94 454-563 304-399 (513)
385 PRK11071 esterase YqiA; Provis 23.7 5.5E+02 0.012 25.2 9.2 83 457-567 4-94 (190)
386 TIGR03403 nifS_epsilon cystein 23.6 9.2E+02 0.02 25.8 12.8 102 454-561 60-175 (382)
387 cd00613 GDC-P Glycine cleavage 23.6 9.1E+02 0.02 25.8 12.6 99 456-561 83-194 (398)
388 PRK12342 hypothetical protein; 23.5 3.6E+02 0.0077 28.6 8.3 92 456-569 54-149 (254)
389 PRK08776 cystathionine gamma-s 23.3 9.7E+02 0.021 26.6 12.1 98 456-561 77-180 (405)
390 PRK04663 murD UDP-N-acetylmura 23.3 4.9E+02 0.011 29.0 9.8 89 456-560 8-96 (438)
391 TIGR00514 accC acetyl-CoA carb 23.3 1.3E+02 0.0028 33.6 5.2 31 457-489 4-34 (449)
392 PRK15062 hydrogenase isoenzyme 23.2 2.2E+02 0.0049 31.8 6.9 101 512-619 171-284 (364)
393 PRK08636 aspartate aminotransf 23.1 7.9E+02 0.017 26.7 11.2 99 456-561 97-213 (403)
394 cd00956 Transaldolase_FSA Tran 23.1 8.1E+02 0.018 24.9 12.1 97 464-567 60-166 (211)
395 TIGR01139 cysK cysteine syntha 23.0 1.2E+02 0.0026 31.9 4.7 58 452-513 54-111 (298)
396 PF00670 AdoHcyase_NAD: S-aden 23.0 4.3E+02 0.0092 26.4 8.2 68 449-528 17-84 (162)
397 PRK14571 D-alanyl-alanine synt 22.9 1.8E+02 0.0039 30.5 6.0 41 493-533 20-64 (299)
398 cd01065 NAD_bind_Shikimate_DH 22.8 3.5E+02 0.0077 24.8 7.4 72 454-530 18-89 (155)
399 PRK12656 fructose-6-phosphate 22.6 6.1E+02 0.013 26.4 9.6 50 466-518 65-118 (222)
400 PF13090 PP_kinase_C: Polyphos 22.6 70 0.0015 35.5 2.9 47 465-512 50-99 (352)
401 PRK11543 gutQ D-arabinose 5-ph 22.5 5.2E+02 0.011 27.2 9.4 63 497-566 60-126 (321)
402 PRK07811 cystathionine gamma-s 22.5 7.7E+02 0.017 27.1 11.0 88 466-561 88-181 (388)
403 PF08032 SpoU_sub_bind: RNA 2' 22.4 2.6E+02 0.0056 22.9 5.7 53 469-521 6-59 (76)
404 TIGR01746 Thioester-redct thio 22.4 8.6E+02 0.019 25.0 11.7 107 458-564 2-136 (367)
405 PTZ00129 40S ribosomal protein 22.3 2.4E+02 0.0052 27.9 6.2 48 467-514 78-132 (149)
406 PRK15473 cbiF cobalt-precorrin 22.3 5.2E+02 0.011 26.8 9.2 52 469-521 71-125 (257)
407 cd05710 SIS_1 A subgroup of th 22.3 1.2E+02 0.0026 27.6 4.0 27 451-477 44-73 (120)
408 cd00079 HELICc Helicase superf 22.3 5.1E+02 0.011 22.4 9.1 62 452-515 25-87 (131)
409 PRK09212 pyruvate dehydrogenas 22.2 5.9E+02 0.013 27.6 9.9 62 499-565 221-294 (327)
410 PRK07454 short chain dehydroge 22.2 6.9E+02 0.015 24.4 9.7 74 454-530 5-91 (241)
411 PRK07671 cystathionine beta-ly 22.2 9.6E+02 0.021 26.3 11.6 93 461-561 71-169 (377)
412 PRK11337 DNA-binding transcrip 22.2 2.8E+02 0.006 28.9 7.2 90 446-566 131-224 (292)
413 cd06442 DPM1_like DPM1_like re 22.1 2.5E+02 0.0055 26.9 6.5 8 507-514 80-87 (224)
414 cd04185 GT_2_like_b Subfamily 22.1 3.3E+02 0.0071 25.8 7.2 45 457-501 2-47 (202)
415 PRK12414 putative aminotransfe 22.0 8.2E+02 0.018 26.4 11.0 93 455-561 91-200 (384)
416 PRK05865 hypothetical protein; 22.0 2.2E+02 0.0048 35.2 7.2 98 457-565 2-103 (854)
417 cd00984 DnaB_C DnaB helicase C 22.0 4.8E+02 0.01 26.0 8.6 46 522-567 123-174 (242)
418 PRK00141 murD UDP-N-acetylmura 21.9 5.9E+02 0.013 28.8 10.2 69 454-530 14-82 (473)
419 PF00072 Response_reg: Respons 21.9 1.9E+02 0.0041 24.4 5.0 76 483-566 1-81 (112)
420 TIGR01465 cobM_cbiF precorrin- 21.8 3E+02 0.0066 27.5 7.2 54 467-521 60-116 (229)
421 PRK01747 mnmC bifunctional tRN 21.8 2.7E+02 0.0059 32.8 7.8 34 441-474 185-218 (662)
422 COG0707 MurG UDP-N-acetylgluco 21.8 3.8E+02 0.0081 29.7 8.4 96 454-566 182-282 (357)
423 PF06026 Rib_5-P_isom_A: Ribos 21.6 1.7E+02 0.0038 29.2 5.2 79 497-582 10-89 (173)
424 PRK02948 cysteine desulfurase; 21.5 1E+03 0.022 25.4 15.9 103 454-561 60-173 (381)
425 PF00070 Pyr_redox: Pyridine n 21.4 4.8E+02 0.01 21.6 7.5 53 458-510 2-59 (80)
426 TIGR01822 2am3keto_CoA 2-amino 21.3 4.2E+02 0.0091 28.3 8.5 16 546-561 190-205 (393)
427 PRK00208 thiG thiazole synthas 21.2 3.8E+02 0.0082 28.6 7.8 66 498-566 116-185 (250)
428 TIGR01694 MTAP 5'-deoxy-5'-met 21.1 4.4E+02 0.0095 27.1 8.3 29 529-565 175-203 (241)
429 PRK09148 aminotransferase; Val 21.1 6.1E+02 0.013 27.7 9.9 103 452-561 89-203 (405)
430 TIGR02208 lipid_A_msbB lipid A 21.0 1E+03 0.022 25.2 17.6 105 456-563 123-239 (305)
431 PRK05600 thiamine biosynthesis 21.0 1.1E+03 0.024 26.1 11.9 109 443-562 30-162 (370)
432 cd00755 YgdL_like Family of ac 21.0 6.7E+02 0.014 26.0 9.6 114 446-570 3-142 (231)
433 PRK05653 fabG 3-ketoacyl-(acyl 20.9 7.1E+02 0.015 24.0 9.4 106 455-564 5-140 (246)
434 PRK06835 DNA replication prote 20.9 4.4E+02 0.0095 28.8 8.6 14 453-466 181-194 (329)
435 PF13692 Glyco_trans_1_4: Glyc 20.8 3.6E+02 0.0077 23.8 6.7 78 470-562 24-101 (135)
436 COG2022 ThiG Uncharacterized e 20.8 68 0.0015 34.0 2.2 86 449-539 124-214 (262)
437 PF02589 DUF162: Uncharacteris 20.7 68 0.0015 31.3 2.2 54 519-573 81-135 (189)
438 PRK02186 argininosuccinate lya 20.7 2.7E+02 0.0058 34.3 7.7 20 469-490 18-37 (887)
439 PRK05294 carB carbamoyl phosph 20.7 6.7E+02 0.014 31.7 11.1 98 454-567 937-1043(1066)
440 PF00185 OTCace: Aspartate/orn 20.6 3.4E+02 0.0074 26.2 7.0 73 454-528 1-79 (158)
441 PRK11263 cardiolipin synthase 20.6 4E+02 0.0088 30.0 8.5 49 465-513 48-96 (411)
442 PRK09257 aromatic amino acid a 20.6 1.1E+03 0.024 25.5 11.9 98 458-561 98-210 (396)
443 cd05569 PTS_IIB_fructose PTS_I 20.6 2.6E+02 0.0056 24.9 5.6 71 457-563 2-79 (96)
444 PLN02427 UDP-apiose/xylose syn 20.5 3.8E+02 0.0082 28.9 8.0 103 456-564 15-136 (386)
445 PLN02686 cinnamoyl-CoA reducta 20.5 7E+02 0.015 27.0 10.1 109 452-565 50-180 (367)
446 COG2242 CobL Precorrin-6B meth 20.4 5.8E+02 0.013 26.1 8.7 88 451-551 31-123 (187)
447 TIGR01265 tyr_nico_aTase tyros 20.4 6.4E+02 0.014 27.4 9.8 94 454-561 96-207 (403)
448 PRK11908 NAD-dependent epimera 20.4 4.6E+02 0.01 27.6 8.5 103 457-565 3-119 (347)
449 TIGR01306 GMP_reduct_2 guanosi 20.3 5.5E+02 0.012 28.2 9.2 48 461-512 118-165 (321)
450 PRK04690 murD UDP-N-acetylmura 20.3 5.9E+02 0.013 28.8 9.8 70 455-530 8-77 (468)
451 PRK08558 adenine phosphoribosy 20.2 8.1E+02 0.018 25.5 10.0 112 444-563 99-235 (238)
452 TIGR02113 coaC_strep phosphopa 20.2 1.4E+02 0.003 29.7 4.3 32 458-489 4-38 (177)
453 cd01743 GATase1_Anthranilate_S 20.2 2.4E+02 0.0052 27.4 5.9 66 496-567 13-82 (184)
454 PRK08063 enoyl-(acyl carrier p 20.1 5.5E+02 0.012 25.2 8.5 97 455-554 4-126 (250)
455 PRK07179 hypothetical protein; 20.1 8.9E+02 0.019 26.3 10.8 102 455-567 115-221 (407)
No 1
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.1e-96 Score=779.61 Aligned_cols=521 Identities=49% Similarity=0.723 Sum_probs=416.5
Q ss_pred CCCCCCCC-CCCCCCCcccccCCCC-CCCCCCCCCCC---CCCCCCCCCCCCCCccccccCCCCCCccccCCCCCcchhh
Q 006577 40 HSTPLADA-SSPGNFLSPVMIPPPR-HPSSSLLPRLP---HSPSDAFPPPSPTTTTTTTSLGDFSDDVTAASSPPSAAAA 114 (640)
Q Consensus 40 ~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (640)
+.+...+. .+.+|.++|+|+|++| |.+|.+..++- ..+.....+..++ ..-.++.+.+ .|.+. .
T Consensus 6 ~tt~e~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~kk~~k~~~~ep~~~~------~~~~~p~~~t--~s~~~---~ 74 (556)
T KOG1467|consen 6 STTDELSPIDKLKELPEPANNPVARLGTIDQVKSERNAKKVAKQAAKEPAQGE------DKNAEPKDLT--ASAKQ---A 74 (556)
T ss_pred ccccccCccchhhhccccccCccccccchHHHHHHHHHhhcCccccccccCCC------ccccCccccc--ccccc---c
Confidence 33444444 5889999999999999 88888887761 1111111111000 0111111222 11111 0
Q ss_pred hhhhccCCCccccccccccCCCCCCCCCCCcCCCCCCCCCCCeeeeeecCCCCccccCCCCcceeecccccCCCCCcccc
Q 006577 115 AARVRGRGSSVKQQGAASSFPGGGFEVPPSVKAPSSVPASGLTTVSVVKLPPGISENAGGSVSVEVQSDRALNSKPLKEK 194 (640)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (640)
...+..++|.||+|++...+++ .+. . +..+.+....+.++..+.+
T Consensus 75 ------------~~~~~~s~~~~~~e~t~a~~a~---~~a-----------------~---~s~~~~p~~~~~~ka~~~~ 119 (556)
T KOG1467|consen 75 ------------RVAVKASLPKGGAELTVANKAA---AAA-----------------G---SSATQSPKKEKPPKAGLAV 119 (556)
T ss_pred ------------ccchhhcccCCcceecccccch---hhh-----------------c---cccccCCcccCCccccccc
Confidence 1455789999999999773222 111 0 1112222233445667778
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhcCCCCcchhhhccCCCCCCCCCCC-CCCCCCccccccccCCCCccccccccCCCCCCC
Q 006577 195 TSKAERRAIQEAQRAAKAAAKAEGIKTPAATALANAKPTKSTRPSP-QRNDSPVVVAASEKKGGDRSVEKDRKKDVPHPR 273 (640)
Q Consensus 195 ~~kAERra~Qeaqraak~a~k~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~e~~~~~~~~~~~ 273 (640)
.|+||||+.||++||+|+++|++++........+.+.+......|. .|.+.+..+...+ +- .+.++++|.
T Consensus 120 ~t~a~~~a~~Ea~~a~K~a~kg~~~~~a~~~~~~kA~~s~a~~~P~~~k~~~p~~t~~~~-------~~--~~~~~~~pq 190 (556)
T KOG1467|consen 120 PTRAERKAIQEAKRAAKTAEKGEGARKAQVIERAKANASTAPAIPAVKKNALPVTTSVDQ-------AL--KRRAVQNPQ 190 (556)
T ss_pred ccHHHHhhHHHHHHHHHHhhhcccccccccccccccCcccccCCCccccccccccccccc-------hH--Hhhcccchh
Confidence 8999999999999999999999976422111121112222222222 3333232211111 11 567889999
Q ss_pred CccCcHHHHHHhhhcccccccccCCcceecccCCCceecccCcchhhhhhcccchhHHHHHHHHHhhcCCChhHHHHHHH
Q 006577 274 MQYDDKSRVQKLKKRSVVKPTEARNRVELFRHLPQYEHGTQLPVLQSKFFQLDTLHPAVYKVGLQYLSGDICGGNARCIA 353 (640)
Q Consensus 274 ~q~d~~~~~~k~~~~~v~~~~~~~~~V~lf~hLP~~~~~~~l~~~e~~~~ai~~mhPavv~Lgl~~~rGa~~Gsnaraia 353 (640)
+|+++..+.. ++|++|..+ +|.||+||||+.+.. ..|..+..|||+|++||+||+.|.|.|+|+|||+
T Consensus 191 ~q~kt~~~~~-~~rk~V~~~-----~v~lf~hL~q~~~~t------t~f~~~~~IHPAv~~Lglq~a~~kI~GsnaRCIa 258 (556)
T KOG1467|consen 191 NQAKTLASAS-ASRKAVASQ-----KVSLFTHLPQYDRAT------TQFIFLDSIHPAVLRLGLQYALGKISGSNARCIA 258 (556)
T ss_pred hhhhhhcccC-ccccccccc-----eehhhhhhhHhhccc------ccccccccccHHHHHHHHHHhhcccCCccHHHHH
Confidence 9999876655 778888866 799999999998875 2345566699999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCCCccchHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 006577 354 MLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFI 433 (640)
Q Consensus 354 ml~Alk~vI~dy~~p~~~t~srdL~~~L~~~i~~L~~aRPtsvsm~NAIr~lk~~I~~l~~~~~~~eaK~~L~e~Id~fi 433 (640)
||.+|+++|+||.+|+++++.|||..+|+.++.||.+|||++++|||||||+|++|..++.+.++.|+|+.|++.|++||
T Consensus 259 ~L~afqevi~Dy~TP~~ktlsrdLt~~i~~qv~~L~~cRPLs~SmgNAiRflK~eI~~L~~s~~e~eaKe~L~~~I~~~i 338 (556)
T KOG1467|consen 259 MLQAFQEVIKDYTTPPEKTLSRDLTAAISPQVSFLTQCRPLSISMGNAIRFLKNEISKLPISLSESEAKEELQSDIDRFI 338 (556)
T ss_pred HHHHHHHHHHhccCCCccccchhhHhhhhhHHHHHhhcCCccchhhHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEec
Q 006577 434 NEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI 513 (640)
Q Consensus 434 ~E~i~~A~~~Ia~~a~~~I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D 513 (640)
+|+|..|++.|++++.++|+|||+||||++|++|..+|.+||+.|++|+|+|+||||++||++|++.|.+.||+|||+++
T Consensus 339 ~eki~~A~qaI~q~a~~KI~dgdviltyg~s~vV~~ill~A~~~~k~frVvVVDSRP~~EG~~~lr~Lv~~GinctYv~I 418 (556)
T KOG1467|consen 339 AEKIILADQAISQHAVTKIQDGDVLLTYGSSSVVNMILLEAKELGKKFRVVVVDSRPNLEGRKLLRRLVDRGINCTYVLI 418 (556)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCEEEEecchHHHHHHHHHHHHhCcceEEEEEeCCCCcchHHHHHHHHHcCCCeEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEecccccccccccCCCcccccccCccCcccCCC
Q 006577 514 NAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGMHSKNMGTPN 593 (640)
Q Consensus 514 sAv~~iM~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~aetyKf~~~~~~ds~i~nElrdP~Evl~~~g 593 (640)
++++|+|.+|++|||||++|++||.|++++||+++||+|++|||||+||||+|||++|+|+|++++|||+||+++..++|
T Consensus 419 ~a~syim~evtkvfLGahailsNG~vysR~GTa~valvAna~nVPVlVCCE~yKF~eRvQlDsi~~NEL~dpn~l~~v~g 498 (556)
T KOG1467|consen 419 NAASYIMLEVTKVFLGAHAILSNGAVYSRVGTACVALVANAFNVPVLVCCEAYKFHERVQLDSIVSNELGDPNALQEVRG 498 (556)
T ss_pred hhHHHHHHhcceeeechhhhhcCcchhhhcchHHHHHHhcccCCCEEEEechhhhhhhhhhhhhhhcccCChhhhhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred CCcc-----------cCccccccccCCCC--------cccccchh---hhhccccc
Q 006577 594 TSFR-----------THALWLLIQVSCLQ--------VILIPFQR---FLGERTSI 627 (640)
Q Consensus 594 ~~~~-----------~~~~nPaFDVTP~e--------li~iP~s~---~~~~~~~~ 627 (640)
.... ...+|-.||+||+| +++||+++ +++|++..
T Consensus 499 ~~~~~~L~~wqn~~~L~~lnl~YD~TPpelIs~vVTe~g~lp~TSVPvilr~~~~~ 554 (556)
T KOG1467|consen 499 REDKVALAGWQNNANLKFLNLMYDVTPPELISAVVTELGMLPPTSVPVILREKKLT 554 (556)
T ss_pred cchhhhhhccccccccchhheeeccCcHHHHHHHHhhccccCCccchHHHhhhhcc
Confidence 3221 15678889999995 55779888 88988763
No 2
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=100.00 E-value=4.3e-66 Score=543.37 Aligned_cols=298 Identities=19% Similarity=0.267 Sum_probs=275.6
Q ss_pred Ccceec--ccCCCceecccCcchhhhhhcccchhHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHccCCCCCccchH
Q 006577 298 NRVELF--RHLPQYEHGTQLPVLQSKFFQLDTLHPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSR 375 (640)
Q Consensus 298 ~~V~lf--~hLP~~~~~~~l~~~e~~~~ai~~mhPavv~Lgl~~~rGa~~Gsnaraiaml~Alk~vI~dy~~p~~~t~sr 375 (640)
+.|.|| +.||++.+|+.|.++++++.+|++|. + ||++.+|.++|++|++++++. . ...
T Consensus 8 ~~l~~ldq~~lP~~~~~~~~~~~~~~~~aI~~m~---v-------RGApaig~~aa~~~~l~~~~~----~------~~~ 67 (331)
T TIGR00512 8 GSLELLDQRLLPHESEYIEVTTVEDVADAIRDMR---V-------RGAPAIGIVAAYGLALAAREA----D------ERE 67 (331)
T ss_pred CEEEEEecCCCCCeeEEEEeCCHHHHHHHHHhCc---c-------cCchHHHHHHHHHHHHHHhhc----C------CHH
Confidence 468999 99999999999999999999999999 8 999999999999999888763 1 246
Q ss_pred HHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 006577 376 DLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDG 455 (640)
Q Consensus 376 dL~~~L~~~i~~L~~aRPtsvsm~NAIr~lk~~I~~l~~~~~~~eaK~~L~e~Id~fi~E~i~~A~~~Ia~~a~~~I~dg 455 (640)
++.+.|+..+++|.+||||++||+||+++|++.+..+ .+.+++|+.+++.+++|++|. ..+++.|+++|.++|++|
T Consensus 68 ~~~~~l~~~~~~L~~~RPtavnL~~A~~~~~~~i~~~---~~~~~~k~~l~e~a~~~~~e~-~~~~~~I~~~g~~~I~dg 143 (331)
T TIGR00512 68 EFKALLEEKLQYLVSSRPTAVNLSWALDRMRAALEAA---KTVADIKEALLAEAERILEED-LEDNRAIGENGAALIKKG 143 (331)
T ss_pred HHHHHHHHHHHHHHHhCCcHhhHHHHHHHHHHHHhcc---CCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCC
Confidence 7889999999999999999999999999999988763 468899999999999999886 679999999999999999
Q ss_pred C----EEEeecCcH--------HHHHHHHHHHHcCCeeEEEEcCCCCCchHHHH-HHHHHhCCCceEEEechHHHHHhh-
Q 006577 456 D----VLLTYGSSS--------AVEMILQHAHELGKQFRVVIVDSRPKHEGKLL-LRRLVRKGLSCTYTHINAISYIIH- 521 (640)
Q Consensus 456 d----vILT~g~Ss--------tV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~L-a~eL~~~GI~vTlI~DsAv~~iM~- 521 (640)
+ +|||||||+ +|+++|+.|+++|++|+|||+||||++||.+| +++|.+.||+||||+|||++|+|+
T Consensus 144 ~~~~~~ILThcnsg~lat~~~gtal~~l~~A~~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsav~~~m~~ 223 (331)
T TIGR00512 144 VAAPLRVLTHCNTGSLATAGYGTALGVIRSAHEKGRLEHVYADETRPRLQGARLTAWELVQEGIPATLITDSMAAHLMKH 223 (331)
T ss_pred CCCCceEEeecCCccccccccchHHHHHHHHHHcCCceEEEECCCCchhhHHHHHHHHHHHCCCCEEEEcccHHHHHhcc
Confidence 9 999999985 78999999999999999999999999999977 599999999999999999999999
Q ss_pred -hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEecccccccccccCCCcccccccCccCcccCCCCCcc---
Q 006577 522 -EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGMHSKNMGTPNTSFR--- 597 (640)
Q Consensus 522 -~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~aetyKf~~~~~~ds~i~nElrdP~Evl~~~g~~~~--- 597 (640)
+||+||+|||+|++||+++||+|||++|++||+|+||||||||+|||++.++.+..+.+|+|||+|+..+.|....
T Consensus 224 ~~vd~VivGAd~v~~nG~v~nkiGT~~lA~~Ak~~~vPfyV~a~~~kfd~~~~~~~~i~iE~r~p~ev~~~~g~~~~~~~ 303 (331)
T TIGR00512 224 GEVDAVIVGADRIAANGDTANKIGTYQLAVLAKHHGVPFYVAAPTSTIDLETKDGAEIPIEERPPEEVTHVGGVRIAPPG 303 (331)
T ss_pred cCCCEEEEcccEEecCCCEeehhhHHHHHHHHHHhCCCEEEeccccccccCCCCccccccccCCHHHhcccCCcccCCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999988765543
Q ss_pred cCccccccccCCCCcccccchh
Q 006577 598 THALWLLIQVSCLQVILIPFQR 619 (640)
Q Consensus 598 ~~~~nPaFDVTP~eli~iP~s~ 619 (640)
..++||+||+||++||..-+++
T Consensus 304 ~~v~Np~FD~TP~~lIt~iITe 325 (331)
T TIGR00512 304 IDVWNPAFDVTPAELITGIITE 325 (331)
T ss_pred ceeecccccCCCHHHCCEEEcc
Confidence 3789999999999988654443
No 3
>COG0182 Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.9e-66 Score=531.51 Aligned_cols=294 Identities=22% Similarity=0.260 Sum_probs=273.9
Q ss_pred cceec--ccCCCceecccCcchhhhhhcccchhHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHccCCCCCccchHH
Q 006577 299 RVELF--RHLPQYEHGTQLPVLQSKFFQLDTLHPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRD 376 (640)
Q Consensus 299 ~V~lf--~hLP~~~~~~~l~~~e~~~~ai~~mhPavv~Lgl~~~rGa~~Gsnaraiaml~Alk~vI~dy~~p~~~t~srd 376 (640)
.|.|| +.||++.+|+.|+++++++.+|++|. + ||+|+++.+++++|++++++.-.+- ..++
T Consensus 13 ~v~llDQr~LP~e~~~v~~~~~~dva~AIk~M~---V-------RGAPAIgv~AayG~alaa~~~~~~~-------~~~e 75 (346)
T COG0182 13 SVKLLDQRLLPFEEKYVECKTYEDVAEAIKDMV---V-------RGAPAIGVAAAYGLALAARESKNDS-------KGEE 75 (346)
T ss_pred eEEEEecccCCceEEEEEeccHHHHHHHHHhhh---c-------cCCcHHHHHHHHHHHHHHHhccccc-------chHH
Confidence 58888 99999999999999999999999999 8 9999999999999999998753221 2468
Q ss_pred HHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 006577 377 LTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGD 456 (640)
Q Consensus 377 L~~~L~~~i~~L~~aRPtsvsm~NAIr~lk~~I~~l~~~~~~~eaK~~L~e~Id~fi~E~i~~A~~~Ia~~a~~~I~dgd 456 (640)
+.+.|..+.+.|.++|||++||+|++++|+..+.+.. +.++.++.+.+...++.+|+ ..+|..|+++++++|.+|+
T Consensus 76 ~~~~le~a~~~l~~tRPTAvNLfwal~rm~~~~~~~~---~v~~~~~~~~~eA~~i~~ED-~e~n~~iG~~G~~ll~~~~ 151 (346)
T COG0182 76 FIEALEKAAETLKSTRPTAVNLFWALDRMLNAAKEAI---EVKEPKESILQEAEEIAEED-LEANRAIGENGAELLPDGD 151 (346)
T ss_pred HHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHhhcc---chhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhccCC
Confidence 8999999999999999999999999999999887643 26788888988888888886 6799999999999999999
Q ss_pred EEEeecCcHH--------HHHHHHHHHHcCCeeEEEEcCCCCCchHHHHH-HHHHhCCCceEEEechHHHHHhh--hccE
Q 006577 457 VLLTYGSSSA--------VEMILQHAHELGKQFRVVIVDSRPKHEGKLLL-RRLVRKGLSCTYTHINAISYIIH--EVTR 525 (640)
Q Consensus 457 vILT~g~Sst--------V~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La-~eL~~~GI~vTlI~DsAv~~iM~--~Vdk 525 (640)
+||||||.+. ++++++.||++||.++||++||||++||.+|+ |+|.+.|||+|+|+|||++|+|+ .||+
T Consensus 152 ~VLThCNaGaLAt~~~GTAlgviR~a~~~gk~i~v~a~ETRP~lQGARLTawEL~~~GIpvtLItD~aag~~M~~g~Id~ 231 (346)
T COG0182 152 TVLTHCNAGALATVGYGTALGVIRSAHEEGKDIRVFADETRPYLQGARLTAWELVQDGIPVTLITDNAAGHLMQQGMIDA 231 (346)
T ss_pred eEEeeecCCceeecCccchHHHHHHHHHCCCeeEEEeCCCccccccceeeHHHHhhcCCceEEEeccHHHHHHHhCCCcE
Confidence 9999999864 79999999999999999999999999999997 99999999999999999999999 5999
Q ss_pred EEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEecccccccccccCCCcccccccCccCcccCCCCCccc---Cccc
Q 006577 526 VFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGMHSKNMGTPNTSFRT---HALW 602 (640)
Q Consensus 526 VlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~aetyKf~~~~~~ds~i~nElrdP~Evl~~~g~~~~~---~~~n 602 (640)
||+|||+|+.||+++||||||++|++||+|||||||++|..+||.....+.++.+|+|||+||+.+.|..+.+ ++||
T Consensus 232 viVGADRI~~nGdvaNKIGTY~lAvlAk~~gIPFyVaAP~sTiD~~~~~G~~I~IEER~p~Ev~~v~g~riap~~v~~yN 311 (346)
T COG0182 232 VIVGADRIAANGDVANKIGTYQLAVLAKHHGIPFYVAAPLSTIDFELKSGEDIPIEERDPEEVLEVGGVRIAPEGVEAYN 311 (346)
T ss_pred EEEccceeecCCcchhhhhHHHHHHHHHHcCCCeEEEcccCccccccCCCCccceeecCHHHeEeeccEEeCCCCccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988765 7899
Q ss_pred cccccCCCCcc
Q 006577 603 LLIQVSCLQVI 613 (640)
Q Consensus 603 PaFDVTP~eli 613 (640)
|+|||||++||
T Consensus 312 PAFDvTP~~lI 322 (346)
T COG0182 312 PAFDVTPPELI 322 (346)
T ss_pred ccccCChHHhc
Confidence 99999999887
No 4
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=100.00 E-value=3.3e-65 Score=539.47 Aligned_cols=294 Identities=20% Similarity=0.250 Sum_probs=270.5
Q ss_pred CCcceec--ccCCCceecccCcchhhhhhcccchhHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHccCCCCCccch
Q 006577 297 RNRVELF--RHLPQYEHGTQLPVLQSKFFQLDTLHPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLS 374 (640)
Q Consensus 297 ~~~V~lf--~hLP~~~~~~~l~~~e~~~~ai~~mhPavv~Lgl~~~rGa~~Gsnaraiaml~Alk~vI~dy~~p~~~t~s 374 (640)
.+.|.|| +.||+++.|+.|.++++++.+|++|. + ||++.++.+++++|++++++.-. ...
T Consensus 10 ~~~l~~ldq~~lP~~~~~~~~~~~~~v~~aI~~m~---v-------rGApaig~aaa~~lal~~~~~~~--------~~~ 71 (344)
T PRK05720 10 DGAVRILDQRKLPHEVEYVELTTAEEVADAIRDMV---V-------RGAPAIGIAAAYGMALAAREDAS--------DDG 71 (344)
T ss_pred CCEEEEEecCCCCCeeEEEEeCCHHHHHHHHHhCe---e-------cCCcHHHHHHHHHHHHHHhhccC--------CCH
Confidence 3569999 99999999999999999999999999 8 99999999999999888765311 134
Q ss_pred HHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 006577 375 RDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRD 454 (640)
Q Consensus 375 rdL~~~L~~~i~~L~~aRPtsvsm~NAIr~lk~~I~~l~~~~~~~eaK~~L~e~Id~fi~E~i~~A~~~Ia~~a~~~I~d 454 (640)
.++.+.|+.++++|.+||||++||+|+++++++.+... +.+++++.+++.+++|++|+ ..+++.|+++|+++|++
T Consensus 72 ~~~~~~l~~~~~~L~~~RPtavnL~~ai~~~~~~i~~~----~~~~~~~~l~~~a~~~~~e~-~~~~~~I~~~g~~~I~~ 146 (344)
T PRK05720 72 EEFLKKLEEAAAYLAASRPTAVNLFWALDRMREVLAPL----PGAERKAALEEEAIEIHEED-VEINRAIGEHGLTLIRK 146 (344)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHccC
Confidence 67888999999999999999999999999999888642 57899999999999999997 57999999999999999
Q ss_pred CCEEEeecCcH--------HHHHHHHHHHHcCCeeEEEEcCCCCCchHHHH-HHHHHhCCCceEEEechHHHHHhh--hc
Q 006577 455 GDVLLTYGSSS--------AVEMILQHAHELGKQFRVVIVDSRPKHEGKLL-LRRLVRKGLSCTYTHINAISYIIH--EV 523 (640)
Q Consensus 455 gdvILT~g~Ss--------tV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~L-a~eL~~~GI~vTlI~DsAv~~iM~--~V 523 (640)
|++|||||||+ +++++|+.|+++|++|+|||+||||++||.+| +++|.+.||+||||+|+|++|+|+ +|
T Consensus 147 g~~ILThc~sg~lat~~~gTal~~i~~A~~~gk~~~V~v~EsRP~~qG~~lta~eL~~~GI~vtlI~Dsa~~~~M~~~~v 226 (344)
T PRK05720 147 GQGILTHCNAGWLATAGYGTALAPIYAAKEKGIDIHVYADETRPRLQGARLTAWELYQAGIDVTVITDNMAAHLMQTGKI 226 (344)
T ss_pred CCEEEEecCCCcceecchhHHHHHHHHHHHcCCceEEEEcCCCChhhhHHHHHHHHHHCCCCEEEEcccHHHHHhcccCC
Confidence 99999999996 57889999999999999999999999999977 699999999999999999999998 59
Q ss_pred cEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEecccccccccccCCCcccccccCccCcccCCCCCcc---cCc
Q 006577 524 TRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGMHSKNMGTPNTSFR---THA 600 (640)
Q Consensus 524 dkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~aetyKf~~~~~~ds~i~nElrdP~Evl~~~g~~~~---~~~ 600 (640)
|+||+|||+|++||+++||+|||++|++||+|+||||||||+|||+++++.|..+.+|+|||+|++.+.|.... ..+
T Consensus 227 d~VivGAd~I~~nG~v~NkiGT~~lAl~Ak~~~vPfyV~a~~~kfd~~~~~g~~i~iE~r~~~ev~~~~~~~~~~~~v~v 306 (344)
T PRK05720 227 DAVIVGADRIAANGDVANKIGTYQLAIAAKYHGVPFYVAAPSSTIDLTLADGKEIPIEERDPEEVTEVGGVRIAPEGVKV 306 (344)
T ss_pred CEEEEcccEEecCCCEeehhhHHHHHHHHHHhCCCEEEeccccccCcCCCCCcccccccCCHHHhcccCCcccCCCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999988776543 378
Q ss_pred cccccccCCCCcc
Q 006577 601 LWLLIQVSCLQVI 613 (640)
Q Consensus 601 ~nPaFDVTP~eli 613 (640)
+||+||+||++||
T Consensus 307 ~Np~FDvTP~~lI 319 (344)
T PRK05720 307 YNPAFDVTPAELI 319 (344)
T ss_pred ecccccCCCHHHC
Confidence 9999999999655
No 5
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional
Probab=100.00 E-value=5e-64 Score=529.21 Aligned_cols=294 Identities=18% Similarity=0.222 Sum_probs=268.0
Q ss_pred Ccceec--ccCCCceecccCcchhhhhhcccchhHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHccCCCCCccchH
Q 006577 298 NRVELF--RHLPQYEHGTQLPVLQSKFFQLDTLHPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSR 375 (640)
Q Consensus 298 ~~V~lf--~hLP~~~~~~~l~~~e~~~~ai~~mhPavv~Lgl~~~rGa~~Gsnaraiaml~Alk~vI~dy~~p~~~t~sr 375 (640)
+.|.|| +.||+++.|+.|+++++++.+|++|. + ||++.+|.++|++|++++++... ...+
T Consensus 11 ~~l~~ldq~~lP~~~~~~~~~~~~~v~~aI~~m~---v-------RGApaig~aaa~g~~l~~~~~~~--------~~~~ 72 (339)
T PRK06036 11 NSVKLIDQTLLPEEYKVIECKTLESLCEAIKSLR---V-------RGAPALGAAGGYGIALAARLSKA--------KDVD 72 (339)
T ss_pred CeEEEEEcCCCCCeEEEEEeCCHHHHHHHHHhCc---c-------cCchHHHHHHHHHHHHHHHhccc--------CCHH
Confidence 469999 99999999999999999999999999 8 99999999999999999876311 1346
Q ss_pred HHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 006577 376 DLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDG 455 (640)
Q Consensus 376 dL~~~L~~~i~~L~~aRPtsvsm~NAIr~lk~~I~~l~~~~~~~eaK~~L~e~Id~fi~E~i~~A~~~Ia~~a~~~I~dg 455 (640)
+|.+.|+..+++|.++|||++||+|+++++++.+.. ..+.+++++.+.+.+++|++|. ..++++|+++|.++|++|
T Consensus 73 ~~~~~l~~~~~~L~~aRPTavnL~~a~~r~~~~~~~---~~~~~~~~~~~~e~a~~~~~e~-~~~~~~I~~~g~~~I~~g 148 (339)
T PRK06036 73 ELLKDLKVAAETLKSTRPTAVNLSWGVDRVLKAALD---AEDVEEIRDIALREAERIAEED-VARNKLIGKHGAKLLEDG 148 (339)
T ss_pred HHHHHHHHHHHHHHHhCCcHhhHHHHHHHHHHHhhc---cCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHccCC
Confidence 788999999999999999999999999998876653 2467899999999999999885 689999999999999999
Q ss_pred CEEEeecCcH--------HHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHH-HHHHhCCCceEEEechHHHHHhhh--cc
Q 006577 456 DVLLTYGSSS--------AVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL-RRLVRKGLSCTYTHINAISYIIHE--VT 524 (640)
Q Consensus 456 dvILT~g~Ss--------tV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La-~eL~~~GI~vTlI~DsAv~~iM~~--Vd 524 (640)
++|||||||+ +++++|+.|+++||+|+|||+||||++||.+|+ |+|.+.||+||||+|+|++|+|++ ||
T Consensus 149 ~~ILThc~sg~lat~~~gTal~~l~~A~~~gk~~~V~v~EtRP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~M~~~~Vd 228 (339)
T PRK06036 149 DTVLTHCNAGRLACVDWGTALGVIRSAVEQGKEIKVIACETRPLNQGSRLTTWELMQDNIPVTLITDSMAGIVMRQGMVD 228 (339)
T ss_pred CEEEEecCCccccccccchHHHHHHHHHHcCCceEEEEcCCCchhhHHHHHHHHHHHcCCCEEEEehhHHHHHhccCCCC
Confidence 9999999996 678999999999999999999999999999985 999999999999999999999987 99
Q ss_pred EEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEecccccccccccCCCcccccccCccCcccCCCCCcc---cCcc
Q 006577 525 RVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGMHSKNMGTPNTSFR---THAL 601 (640)
Q Consensus 525 kVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~aetyKf~~~~~~ds~i~nElrdP~Evl~~~g~~~~---~~~~ 601 (640)
+||+|||+|++|| ++||+|||++|++||+|+||||||||++||+.....| .+.+|+|+|+|+..+.+.... ..++
T Consensus 229 ~VivGAd~I~anG-v~NKiGT~~lA~~Ak~~~vPfyV~ap~s~~d~~~~~g-~i~iE~r~~~Ev~~~~~~~~~~~~v~v~ 306 (339)
T PRK06036 229 KVIVGADRITRDA-VFNKIGTYTHSVLAKEHEIPFYVAAPLSTFDFEGWEG-SVKIEERDPDELRYCGKTQIAPKDVPVY 306 (339)
T ss_pred EEEECccchhhcC-eehhhhHHHHHHHHHHhCCCEEEEeecCccCCCcCCC-CcccccCCHHHhccccCcccCCCCceee
Confidence 9999999999997 9999999999999999999999999999999988777 778999999999987765543 3689
Q ss_pred ccccccCCCCcccc
Q 006577 602 WLLIQVSCLQVILI 615 (640)
Q Consensus 602 nPaFDVTP~eli~i 615 (640)
||+|||||++||..
T Consensus 307 Np~FDvTP~~lIt~ 320 (339)
T PRK06036 307 NPAFDATPMENVTA 320 (339)
T ss_pred CcccccCCHHHCCE
Confidence 99999999976643
No 6
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=100.00 E-value=7.7e-64 Score=530.92 Aligned_cols=299 Identities=19% Similarity=0.212 Sum_probs=269.8
Q ss_pred CCcceec--ccCCCceecccCcchhhhhhcccchhHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHccCCCCCccch
Q 006577 297 RNRVELF--RHLPQYEHGTQLPVLQSKFFQLDTLHPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLS 374 (640)
Q Consensus 297 ~~~V~lf--~hLP~~~~~~~l~~~e~~~~ai~~mhPavv~Lgl~~~rGa~~Gsnaraiaml~Alk~vI~dy~~p~~~t~s 374 (640)
.+.|.|| +.||+++.|+.|.++++++.+|++|. + ||++.++.+++++|++++++.-. ...
T Consensus 23 ~~~l~~lDq~~lP~~~~~~~~~~~~~v~~aI~~M~---v-------RGApaigiaAa~glal~~~~~~~--------~~~ 84 (363)
T PRK05772 23 DNTLTLLDQSLLPFETVYVDLKTVEEVALAIRNMQ---V-------RGAPAIGITAGYGMVLALIENNV--------KTL 84 (363)
T ss_pred CCEEEEEecCCCCCeEEEEEeCCHHHHHHHHHhCc---c-------cCCcHHHHHHHHHHHHHHHhccC--------CCH
Confidence 3469999 99999999999999999999999999 8 99999999999999998877311 134
Q ss_pred HHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006577 375 RDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIP---ISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTK 451 (640)
Q Consensus 375 rdL~~~L~~~i~~L~~aRPtsvsm~NAIr~lk~~I~~l~---~~~~~~eaK~~L~e~Id~fi~E~i~~A~~~Ia~~a~~~ 451 (640)
.++.+.|+..+++|.++|||++||.|++++|++.+.... ...+.+++++.+.+.+++|++|+ ..++++|+++|+++
T Consensus 85 ~~~~~~l~~~~~~L~~aRPTaVnL~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~A~~i~~ed-~~~~~~I~~~g~~~ 163 (363)
T PRK05772 85 DDAIRELTRAKTILDSARPTAVNLVWATSRMLNKAKNTVESGNAKSVNELIELLKVEAKKIFEEE-YDAEIQMGLYGLEK 163 (363)
T ss_pred HHHHHHHHHHHHHHHhcCCcHHhHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhh
Confidence 678889999999999999999999999999999876431 12367899999999999999987 56999999999999
Q ss_pred ccCCCEEEeecCcH---------HHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHH-HHHHhCCCceEEEechHHHHHhh
Q 006577 452 IRDGDVLLTYGSSS---------AVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL-RRLVRKGLSCTYTHINAISYIIH 521 (640)
Q Consensus 452 I~dgdvILT~g~Ss---------tV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La-~eL~~~GI~vTlI~DsAv~~iM~ 521 (640)
|.+|++|||||||+ +++++|+.|+++|++|+|||+||||++||.+|+ |+|.+.||+||||+|||++|+|+
T Consensus 164 I~dg~~ILThcnsg~Lat~~g~gtal~~i~~a~~~gk~f~V~v~EsRP~~qG~rlta~eL~~~GIpvtlI~Dsa~~~~m~ 243 (363)
T PRK05772 164 LNDGDTVLTQCNAGGLATGTGLGTALAPVKLAKALGMSVSVIAPETRPWLQGSRLTVYELMEEGIKVTLITDTAVGLVMY 243 (363)
T ss_pred cCCCCEEEEecCCcchhhccccccHHHHHHHHHHCCCeEEEEECCCCccchhHHHHHHHHHHCCCCEEEEehhHHHHHHh
Confidence 99999999999985 478999999999999999999999999999885 99999999999999999999996
Q ss_pred --hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEecccccccccccCCCcccccccCccCcccCCCCCcc--
Q 006577 522 --EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGMHSKNMGTPNTSFR-- 597 (640)
Q Consensus 522 --~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~aetyKf~~~~~~ds~i~nElrdP~Evl~~~g~~~~-- 597 (640)
+||+||+|||+|++||+++||+|||++|++||+||||||||||+|||+++++. ..+.+|+|+|+|++.+.|....
T Consensus 244 ~~~Vd~VivGAD~I~~NG~v~NKiGTy~lA~~Ak~~~vPfyV~ap~~k~d~~~~~-~~i~ieer~p~ev~~~~~~~~~~~ 322 (363)
T PRK05772 244 KDMVNNVMVGADRILRDGHVFNKIGTFKEAVIAHELGIPFYALAPTSTFDLKSDV-NDVKIEERDPNEVRTIRGVPITPE 322 (363)
T ss_pred hcCCCEEEECccEEecCCCEeehhhhHHHHHHHHHhCCCEEEEccccccCccccc-cccccccCCHHHhcccCCceecCC
Confidence 59999999999999999999999999999999999999999999999999887 5567899999999988775543
Q ss_pred -cCccccccccCCCCcccc
Q 006577 598 -THALWLLIQVSCLQVILI 615 (640)
Q Consensus 598 -~~~~nPaFDVTP~eli~i 615 (640)
..++||+|||||++||..
T Consensus 323 ~~~v~Np~FDvTP~~lIt~ 341 (363)
T PRK05772 323 DVNVYNPVFDVTPPKYITG 341 (363)
T ss_pred CceeeccCccCCCHHHCCE
Confidence 378999999999976643
No 7
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=100.00 E-value=9.5e-63 Score=520.76 Aligned_cols=297 Identities=15% Similarity=0.188 Sum_probs=270.7
Q ss_pred Ccceec--ccCCCceecccCcchhhhhhcccchhHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHccCCCCCccchH
Q 006577 298 NRVELF--RHLPQYEHGTQLPVLQSKFFQLDTLHPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSR 375 (640)
Q Consensus 298 ~~V~lf--~hLP~~~~~~~l~~~e~~~~ai~~mhPavv~Lgl~~~rGa~~Gsnaraiaml~Alk~vI~dy~~p~~~t~sr 375 (640)
+.|.|| +.||++..|+.|.++++++.+|++|. + ||++.+|.+++++|++++++... ....
T Consensus 22 ~~l~ilDQ~~lP~~~~~~~~~~~~~v~~aI~~M~---v-------RGApaIgvaAa~glal~~~~~~~--------~~~~ 83 (356)
T PRK08334 22 GKVYMIDQRLLPREFKVIELRTVEEVAEAIKTMT---V-------RGAPAIGAAAAFGLALYAETSKA--------KTKD 83 (356)
T ss_pred CEEEEEecCCCCCeEEEEEeCCHHHHHHHHHhCc---c-------cCcHHHHHHHHHHHHHHHHhccc--------CCHH
Confidence 469999 99999999999999999999999999 8 99999999999999999877321 1346
Q ss_pred HHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 006577 376 DLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDG 455 (640)
Q Consensus 376 dL~~~L~~~i~~L~~aRPtsvsm~NAIr~lk~~I~~l~~~~~~~eaK~~L~e~Id~fi~E~i~~A~~~Ia~~a~~~I~dg 455 (640)
++.+.|+..+++|.++|||++||.|++++|++.+.... ..+.+++++.+.+.+++|++++ ..++++|+++|+++|.+|
T Consensus 84 ~~~~~l~~~~~~L~~~RPTavnL~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~a~~i~~~d-~~~~~~Ig~~g~~li~dg 161 (356)
T PRK08334 84 EFMDGFYKAYETLKNTRPTAVNLFWALNRIKKLVEEHL-EDPLDEIKRLIVEEAQKIADED-VEANLRMGHYGAEVLPEG 161 (356)
T ss_pred HHHHHHHHHHHHHHHcCCcHHhHHHHHHHHHHHHHhhc-cCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhcCCC
Confidence 78889999999999999999999999999998886432 1467889999999999999886 678999999999999999
Q ss_pred CEEEeecCc--------HHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHH-HHHHhCCCceEEEechHHHHHhh--hcc
Q 006577 456 DVLLTYGSS--------SAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL-RRLVRKGLSCTYTHINAISYIIH--EVT 524 (640)
Q Consensus 456 dvILT~g~S--------stV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La-~eL~~~GI~vTlI~DsAv~~iM~--~Vd 524 (640)
+ ||||||+ ++++++|+.|+++|+.|+|||+||||++||.+|+ |+|.+.||+||+|+|||++|+|+ +||
T Consensus 162 ~-ILTHcnaG~LAt~~~gTal~vi~~A~~~gk~~~V~v~EtRP~~qG~rlta~eL~~~GI~vtlI~Dsav~~~M~~~~Vd 240 (356)
T PRK08334 162 N-VLTHCNAGSLATVHLGTVGAVLRVMHKDGTLKLLWVDETRPVLQGARLSAWEYHYDGIPLKLISDNMAGFVMQQGKVD 240 (356)
T ss_pred C-EEEecCcchhhhcccchHHHHHHHHHHcCCeEEEEECCCCchhhHHHHHHHHHHHCCCCEEEEehhHHHHHhhhcCCC
Confidence 9 9999974 6699999999999999999999999999999996 99999999999999999999997 799
Q ss_pred EEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEecccccccccccCCCcccccccCccCcccCCCCCc--ccCccc
Q 006577 525 RVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGMHSKNMGTPNTSF--RTHALW 602 (640)
Q Consensus 525 kVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~aetyKf~~~~~~ds~i~nElrdP~Evl~~~g~~~--~~~~~n 602 (640)
+||+|||+|++||+++||+|||++|++||+|+|||||||+++||+..+..+..+.+|+|+|+|++.+.|... ...++|
T Consensus 241 ~VivGAd~I~~nG~v~NKiGTy~lA~~Ak~~~vPfyV~Ap~~t~d~~~~~~~~i~iE~r~~~ev~~~~~~~~~~~~~v~N 320 (356)
T PRK08334 241 AIIVGADRIVANGDFANKIGTYTLAVLAKEHGIPFFTVAPLSTIDMSLKSGKEIPIEERSPEEVLTCGGCRIAPDVDVYN 320 (356)
T ss_pred EEEECccEEecCCCEeehhhHHHHHHHHHHhCCCEEEEcccCccCCCCCCCcccccccCChHHheeccCcccCCCcceec
Confidence 999999999999999999999999999999999999999999999998888889999999999998766544 347899
Q ss_pred cccccCCCCcccc
Q 006577 603 LLIQVSCLQVILI 615 (640)
Q Consensus 603 PaFDVTP~eli~i 615 (640)
|+|||||++||..
T Consensus 321 PaFDvTPp~lIt~ 333 (356)
T PRK08334 321 PAFDVTPHKYLTG 333 (356)
T ss_pred ccccCCCHHHCCE
Confidence 9999999966633
No 8
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=100.00 E-value=1.8e-62 Score=511.04 Aligned_cols=286 Identities=23% Similarity=0.350 Sum_probs=258.3
Q ss_pred hhhhhhcccchhHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHccCCCCCccchHHHHHHHHHHHHHHHhcCCcccc
Q 006577 318 LQSKFFQLDTLHPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVS 397 (640)
Q Consensus 318 ~e~~~~ai~~mhPavv~Lgl~~~rGa~~Gsnaraiaml~Alk~vI~dy~~p~~~t~srdL~~~L~~~i~~L~~aRPtsvs 397 (640)
+++++.+|+.|+ + +|++.++.+++++|++++.+ ..+ ...++|.+.|+..+++|.++||++++
T Consensus 2 ~~~~~~~ik~~~---v-------rGa~~ia~~aa~~l~~~~~~----~~~----~~~~~~~~~l~~~~~~L~~arPt~v~ 63 (301)
T TIGR00511 2 VEETAEKIRSME---I-------RGAGRIARAAAAALMEQAAK----AES----ASPEEFRAEMREAANILISTRPTAVS 63 (301)
T ss_pred HHHHHHHHHhCc---c-------cCcHHHHHHHHHHHHHHHHh----ccc----CCHHHHHHHHHHHHHHHHHcCCchhh
Confidence 578899999999 8 99999998888887777654 222 24678999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEeecCcHHHHHHHHHHHHc
Q 006577 398 MGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHEL 477 (640)
Q Consensus 398 m~NAIr~lk~~I~~l~~~~~~~eaK~~L~e~Id~fi~E~i~~A~~~Ia~~a~~~I~dgdvILT~g~SstV~~vL~~A~e~ 477 (640)
|+|+++++++.++. .+.+++|+.+++.+++|++| +..+++.|+++|.++|++|++|||||||++|+++|+.|+++
T Consensus 64 l~nai~~~~~~i~~----~~~~~~k~~l~~~~~~~~~e-~~~a~~~I~~~a~~~i~~g~~ILT~~~S~tv~~~l~~a~~~ 138 (301)
T TIGR00511 64 LPNAVRYVLKYMSG----EDVETLRETVIERADAFINQ-SDKAQERIGEIGAKRIRDGDVVMTHCNSEAALSVIKTAFEQ 138 (301)
T ss_pred HHHHHHHHHHHhcc----CCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCCCEEEEECCcHHHHHHHHHHHHc
Confidence 99999999998854 36789999999999999977 68899999999999999999999999999999999999999
Q ss_pred CCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCC
Q 006577 478 GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHI 557 (640)
Q Consensus 478 Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~V 557 (640)
|++|+|||+||||++||+.|+++|.+.||+||||+|++++|+|++||+||+|||+|++||+++||+|||++|++||+|+|
T Consensus 139 ~~~f~V~v~EsrP~~~G~~~a~~L~~~gI~vtlI~Dsa~~~~m~~vd~VivGad~v~~nG~v~nkiGT~~lA~~Ak~~~v 218 (301)
T TIGR00511 139 GKDIEVIATETRPRKQGHITAKELRDYGIPVTLIVDSAVRYFMKEVDHVVVGADAITANGALINKIGTSQLALAAREARV 218 (301)
T ss_pred CCcEEEEEecCCCcchHHHHHHHHHHCCCCEEEEehhHHHHHHHhCCEEEECccEEecCCCEEEHHhHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEecccccccccccCCCcccccccCccCcccCCCCCc--ccCccccccccCCC--------Ccccccchhh---hhcc
Q 006577 558 PVLVCCEAYKFHERVQLDSICSNELGMHSKNMGTPNTSF--RTHALWLLIQVSCL--------QVILIPFQRF---LGER 624 (640)
Q Consensus 558 PVyV~aetyKf~~~~~~ds~i~nElrdP~Evl~~~g~~~--~~~~~nPaFDVTP~--------eli~iP~s~~---~~~~ 624 (640)
|||||||+|||++.++.|+.+.+|++||+|++.+.+... ....+||+||+||+ |+|++||+++ ++|+
T Consensus 219 Pv~V~a~~~K~~~~~~~~~~~~ie~~~~~ev~~~~~~~~~~~~~v~np~fD~tP~~lIt~iITe~Gi~~p~~i~~~l~~~ 298 (301)
T TIGR00511 219 PFMVAAETYKFHPKTITGELVEIEERDPTEVLDEEDLKQLGAVKVRNPAFDVTPAEYIDAIITEVGQIPPEMAYTIIKEL 298 (301)
T ss_pred CEEEEcccceecCCCCCCCcccccccCHHHhccccCccCCCCccccCcceecCCHHHCCEEEeCCCcCCcHHHHHHHHHH
Confidence 999999999999999999999999999999987654321 34789999999999 5557788885 4555
Q ss_pred cc
Q 006577 625 TS 626 (640)
Q Consensus 625 ~~ 626 (640)
++
T Consensus 299 ~~ 300 (301)
T TIGR00511 299 LG 300 (301)
T ss_pred cC
Confidence 44
No 9
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=100.00 E-value=3.5e-62 Score=510.70 Aligned_cols=291 Identities=24% Similarity=0.365 Sum_probs=264.4
Q ss_pred chhHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHccCCCCCccchHHHHHHHHHHHHHHHhcCCccccHHHHHHHHH
Q 006577 327 TLHPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLK 406 (640)
Q Consensus 327 ~mhPavv~Lgl~~~rGa~~Gsnaraiaml~Alk~vI~dy~~p~~~t~srdL~~~L~~~i~~L~~aRPtsvsm~NAIr~lk 406 (640)
.||+.+.+++.++.++.+.|+.+.|++++.+|..+++++.++ ...+|++.|+..+++|.+|||++++|+|++|+++
T Consensus 2 ~~~~~v~~~~~~i~~~~v~Ga~~i~~~a~~~l~~~~~~~~~~----~~~~l~~~l~~~~~~L~~arPt~v~l~nair~v~ 77 (310)
T PRK08535 2 EVMPEVLETAEKIKTMEIRGAGRIARAAAEALKDQAEKSDAE----SPEEFKAEMRAAANILISTRPTAVSLPNAVRYVM 77 (310)
T ss_pred CCchhHHHHHHHHHcCcccCcHHHHHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHH
Confidence 478888889999999999999999999999999999887764 4568999999999999999999999999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEc
Q 006577 407 SQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIV 486 (640)
Q Consensus 407 ~~I~~l~~~~~~~eaK~~L~e~Id~fi~E~i~~A~~~Ia~~a~~~I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ 486 (640)
+... ..+.+++|+.+++.+++|++| +..+++.|++++.++|++|++|||||||++|+++|+.|+++|++|+|||+
T Consensus 78 ~~~~----~~~~~~~k~~l~e~~~~~~~e-~~~~~~~I~~~a~~~i~~g~~ILT~~~S~tv~~~l~~A~~~~k~~~V~v~ 152 (310)
T PRK08535 78 RYYS----GETVEEARESVIERAEEFIES-SENAVEKIGEIGAKRIRDGDVIMTHCNSSAALSVIKTAHEQGKDIEVIAT 152 (310)
T ss_pred Hhhc----cCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCCCEEEEeCCcHHHHHHHHHHHHCCCeEEEEEe
Confidence 8642 346899999999999999987 58899999999999999999999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEecccc
Q 006577 487 DSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAY 566 (640)
Q Consensus 487 ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~aety 566 (640)
||||++||+.|+++|.+.||+||||+|++++|+|++||+||+|||+|++||+++||+|||++|++||+|+||||||||+|
T Consensus 153 EsrP~~~G~~~a~~L~~~GI~vtlI~Dsav~~~m~~vd~VivGAd~v~~nG~v~nkiGT~~~A~~Ak~~~vPv~V~a~~~ 232 (310)
T PRK08535 153 ETRPRNQGHITAKELAEYGIPVTLIVDSAVRYFMKDVDKVVVGADAITANGAVINKIGTSQIALAAHEARVPFMVAAETY 232 (310)
T ss_pred cCCchhhHHHHHHHHHHCCCCEEEEehhHHHHHHHhCCEEEECccEEecCCCEEeHHhHHHHHHHHHHhCCCEEEecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCcccccccCccCcccCCCC--CcccCccccccccCCCC--------cccccchhh---hhcccc
Q 006577 567 KFHERVQLDSICSNELGMHSKNMGTPNT--SFRTHALWLLIQVSCLQ--------VILIPFQRF---LGERTS 626 (640)
Q Consensus 567 Kf~~~~~~ds~i~nElrdP~Evl~~~g~--~~~~~~~nPaFDVTP~e--------li~iP~s~~---~~~~~~ 626 (640)
||++.++.|..+.+|++||+|++..... .-....+||+||+||++ +|++||+++ ++|++.
T Consensus 233 K~~~~~~~~~~~~ie~~~~~ev~~~~~~~~~~~v~v~np~fD~tP~~lIt~iiTe~Gi~~ps~v~~~~~~~~~ 305 (310)
T PRK08535 233 KFSPKTLLGELVEIEERDPTEVLPEEILAKLPGVKVRNPAFDVTPPEYIDAIITEIGAIPPEMAYTIIKEYLG 305 (310)
T ss_pred eecCCCCCCCcceecccCHHHhcccccccCCCCceeeccCcccCCHHHCCEEEeCCCcCChHHHHHHHHHHhC
Confidence 9999999999999999999999865211 11346899999999994 556788884 566655
No 10
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=100.00 E-value=2.7e-62 Score=513.43 Aligned_cols=283 Identities=20% Similarity=0.251 Sum_probs=250.0
Q ss_pred Ccceec--ccCCCceecccCcchhhhhhcccchhHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHccCCCCCccchH
Q 006577 298 NRVELF--RHLPQYEHGTQLPVLQSKFFQLDTLHPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSR 375 (640)
Q Consensus 298 ~~V~lf--~hLP~~~~~~~l~~~e~~~~ai~~mhPavv~Lgl~~~rGa~~Gsnaraiaml~Alk~vI~dy~~p~~~t~sr 375 (640)
+.|.|| +.||+++.|+.|.++++++.+|++|. + ||++.++.+++++|+++.++.
T Consensus 20 ~~l~~lDq~~lP~~~~~~~~~~~~~~~~aI~~m~---v-------RGAp~ig~~aa~g~~l~~~~~-------------- 75 (329)
T PRK06371 20 GEVKLIDQRKLPDKIEIFEAKNSDDVAYAIKNMV---V-------RGAPAIGVTAAYGLAMASKNG-------------- 75 (329)
T ss_pred CEEEEEecCCCCCeEEEEEeCCHHHHHHHHHhCe---e-------cChHHHHHHHHHHHHHHHHhH--------------
Confidence 469999 99999999999999999999999999 8 999999999999998877542
Q ss_pred HHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 006577 376 DLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDG 455 (640)
Q Consensus 376 dL~~~L~~~i~~L~~aRPtsvsm~NAIr~lk~~I~~l~~~~~~~eaK~~L~e~Id~fi~E~i~~A~~~Ia~~a~~~I~dg 455 (640)
+.+...+++|.+||||++||+||+++|+... .+.+++++ +++|. ..++++|+++|.++|++|
T Consensus 76 ---~~~~~~~~~L~~~RPtavnL~~a~~~~~~~~------~~~~~a~~--------~~~e~-~~~~~~I~~~g~~~I~~g 137 (329)
T PRK06371 76 ---ENMDEAVEKIRSTRPTAYDLFKAIRYMNSNE------FDMNAARR--------YAMEI-IGRSKKIGEYGNELIKNG 137 (329)
T ss_pred ---HHHHHHHHHHHhcCcchhhHHHHHHHHHhhc------CcHHHHHH--------HHHHH-HHHHHHHHHHHHHHcCCC
Confidence 3466778999999999999999999997542 23455554 33342 457889999999999999
Q ss_pred CEEEeecCcH--------HHHHHHHHHHHcCCeeEEEEcCCCCCchHHHH-HHHHHhCCCceEEEechHHHHHhh--hcc
Q 006577 456 DVLLTYGSSS--------AVEMILQHAHELGKQFRVVIVDSRPKHEGKLL-LRRLVRKGLSCTYTHINAISYIIH--EVT 524 (640)
Q Consensus 456 dvILT~g~Ss--------tV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~L-a~eL~~~GI~vTlI~DsAv~~iM~--~Vd 524 (640)
++|||||||+ +++++|+.|+++|++|+|||+||||++||.+| +|+|.+.||+||||+|||++|+|+ +||
T Consensus 138 ~~ILThcnsg~la~~~~gTal~~l~~A~~~gk~f~V~v~EsRP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~M~~~~Vd 217 (329)
T PRK06371 138 ARILTHCNAGALAVVDWGTALAPIRIAHRNGKNIFVFVDETRPRLQGARLTAWELAQEGIDHAIIADNAAGYFMRKKEID 217 (329)
T ss_pred CEEEEeCCCCcceeccchhHHHHHHHHHHcCCeeEEEECCCCCcchHHHHHHHHHHHCCCCEEEEcccHHHHHhhhcCCC
Confidence 9999999984 46899999999999999999999999999997 599999999999999999999998 599
Q ss_pred EEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEecccccccccccCCCcccccccCccCcccCCCCCcc---cCcc
Q 006577 525 RVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGMHSKNMGTPNTSFR---THAL 601 (640)
Q Consensus 525 kVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~aetyKf~~~~~~ds~i~nElrdP~Evl~~~g~~~~---~~~~ 601 (640)
+||+|||+|++||+++||+|||++|++||+||||||||||+++|+.....+..+.+|+|+|+|++.+.|.... ..++
T Consensus 218 ~VivGAd~I~aNG~v~NKiGT~~lAl~Ak~~~VPfyV~a~~~t~d~~~~~g~~i~iEer~~~ev~~~~g~~~~p~~~~v~ 297 (329)
T PRK06371 218 LVIVGADRIASNGDFANKIGTYEKAVLAKVNGIPFYVAAPGSTFDFSIKSGDEIPIEERDENEVLEINGCRIGPQESHAR 297 (329)
T ss_pred EEEECccEEecCCCEeehhhHHHHHHHHHHcCCCEEEeccccccCCCCCCcCccccccCCHHHeeccCCeecCCCCcccc
Confidence 9999999999999999999999999999999999999999888888777777889999999999988776543 3689
Q ss_pred ccccccCCCCcc--------cccchhhhh
Q 006577 602 WLLIQVSCLQVI--------LIPFQRFLG 622 (640)
Q Consensus 602 nPaFDVTP~eli--------~iP~s~~~~ 622 (640)
||+||+||++|| +++|+++++
T Consensus 298 Np~FDvTP~elIt~iITE~Gv~~p~~i~~ 326 (329)
T PRK06371 298 NPAFDVTPNEYVTGFITEYGIFKPNELWK 326 (329)
T ss_pred CcCccCCCHHHCCEEEccCCccChHHhhh
Confidence 999999999554 567777776
No 11
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=100.00 E-value=6.1e-61 Score=500.06 Aligned_cols=282 Identities=21% Similarity=0.291 Sum_probs=255.5
Q ss_pred CcchhhhhhcccchhHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHccCCCCCccchHHHHHHHHHHHHHHHhcCCc
Q 006577 315 LPVLQSKFFQLDTLHPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPL 394 (640)
Q Consensus 315 l~~~e~~~~ai~~mhPavv~Lgl~~~rGa~~Gsnaraiaml~Alk~vI~dy~~p~~~t~srdL~~~L~~~i~~L~~aRPt 394 (640)
|+++++.+.+|+.|. + +|++.++.+++++|+++++. +.+ ...++|.+.|+..+++|.+|||+
T Consensus 1 ~~~~~~~~~~I~~m~---v-------rGa~~ia~aa~~~l~~~~~~----~~~----~~~~e~~~~l~~~~~~L~~~RPt 62 (303)
T TIGR00524 1 CRTYEDVADAIKSMV---V-------RGAPAIGVAAAYGLALAARK----IET----DNVEEFKEDLEKAADFLLSTRPT 62 (303)
T ss_pred CCCHHHHHHHHHhCe---e-------cChHHHHHHHHHHHHHHHHh----ccC----CCHHHHHHHHHHHHHHHHHhCCc
Confidence 567899999999999 8 99999998888887777654 222 14578889999999999999999
Q ss_pred cccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEeecCc--------HH
Q 006577 395 SVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSS--------SA 466 (640)
Q Consensus 395 svsm~NAIr~lk~~I~~l~~~~~~~eaK~~L~e~Id~fi~E~i~~A~~~Ia~~a~~~I~dgdvILT~g~S--------st 466 (640)
+++|+|+++++++.+.. ..+.+++|+.+++.+++|++|. ..+++.|+++|.++|.+|++||||||| ++
T Consensus 63 ~v~l~na~~~~~~~i~~---~~~~~~~k~~l~~~~~~~~~e~-~~~~~~Ia~~a~~~I~~g~~ILT~~~Sg~lat~~~~t 138 (303)
T TIGR00524 63 AVNLFWALERVLNSAEN---GESVEEAKESLLREAIEIIEED-LETNRKIGENGAKLIKDGDTVLTHCNAGALATSDYGT 138 (303)
T ss_pred hhhHHHHHHHHHHHHhc---cCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHccCCCEEEEecCCccccccCcch
Confidence 99999999999998853 2468899999999999999997 468999999999999999999999999 99
Q ss_pred HHHHHHHHHHcCCeeEEEEcCCCCCchH-HHHHHHHHhCCCceEEEechHHHHHhh--hccEEEEcceeEecCCCeeccc
Q 006577 467 VEMILQHAHELGKQFRVVIVDSRPKHEG-KLLLRRLVRKGLSCTYTHINAISYIIH--EVTRVFLGASSVLSNGTVCSRV 543 (640)
Q Consensus 467 V~~vL~~A~e~Gk~f~ViV~ESRP~~eG-~~La~eL~~~GI~vTlI~DsAv~~iM~--~VdkVlvGADaIlaNG~VvNKi 543 (640)
|+++|+.|+++|++|+|||+||||++|| +.++++|.+.||+||||+|++++|+|+ +||+||+|||+|++||+++||+
T Consensus 139 v~~~l~~A~~~g~~~~V~v~EsrP~~~G~~~~a~~L~~~gI~vtlI~Dsa~~~~m~~~~vd~VlvGAd~v~~nG~v~nk~ 218 (303)
T TIGR00524 139 ALGVIRSAWEDGKRIRVIACETRPRNQGSRLTAWELMQDGIDVTLITDSMAAYFMQKGEIDAVIVGADRIARNGDVANKI 218 (303)
T ss_pred HHHHHHHHHHcCCceEEEECCCCCccchHHHHHHHHHHCCCCEEEEChhHHHHHccccCCCEEEEcccEEecCCCEeEhh
Confidence 9999999999999999999999999999 666899999999999999999999999 9999999999999999999999
Q ss_pred chHHHHHHHhhCCCcEEEecccccccccccCCCcccccccCccCcccCCCCCc---ccCccccccccCCCCcccccch
Q 006577 544 GTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGMHSKNMGTPNTSF---RTHALWLLIQVSCLQVILIPFQ 618 (640)
Q Consensus 544 GT~~lAlaAk~~~VPVyV~aetyKf~~~~~~ds~i~nElrdP~Evl~~~g~~~---~~~~~nPaFDVTP~eli~iP~s 618 (640)
|||++|++||+|+||||||||+|||+++++.+..+.+|++||+|+..+.|... ...++||+||+||++||..-++
T Consensus 219 GT~~lA~~Ak~~~vPv~V~a~s~K~~~~~~~g~~i~~e~~~~~ev~~~~~~~~~~~~~~v~np~fD~TP~~lIt~iiT 296 (303)
T TIGR00524 219 GTYQLAVLAKEFRIPFFVAAPLSTFDTKTSCGEDIVIEERDPEEVAQVGGVRIAPLGVKVYNPAFDITPHDLIDAIIT 296 (303)
T ss_pred hHHHHHHHHHHhCCCEEEecccccccCCCCCccccccccCCHHHhccccCcccCCCCceeecccccCCCHHHCCEEEc
Confidence 99999999999999999999999999999999999999999999987766543 3478999999999988865443
No 12
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1e-58 Score=479.51 Aligned_cols=287 Identities=26% Similarity=0.393 Sum_probs=266.3
Q ss_pred hhHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHccCCCCCccchHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHH
Q 006577 328 LHPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKS 407 (640)
Q Consensus 328 mhPavv~Lgl~~~rGa~~Gsnaraiaml~Alk~vI~dy~~p~~~t~srdL~~~L~~~i~~L~~aRPtsvsm~NAIr~lk~ 407 (640)
+||.|..+...+.+..+.|+...|++++.+|+.++.++.++ ..++|++.|+...+.|.++||++++|+|++|++++
T Consensus 2 ~~~~v~~~~~~lk~~~i~Ga~~ia~~a~eal~~~~~~~~~~----~~~~l~~~i~~~~~~L~~~~P~~~Sl~n~~r~v~~ 77 (301)
T COG1184 2 IMPEVDETAEKLKSMEIRGASWIAIAAAEALEILASDSQAP----TVEELIDAIRELSETLVKARPTAVSLGNLIRFVLR 77 (301)
T ss_pred chHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhccccc----cHHHHHHHHHHHHHHHHhcCCcceeHHHHHHHHHh
Confidence 67889999999999999999999999999999999999886 47899999999999999999999999999999987
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcC
Q 006577 408 QIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVD 487 (640)
Q Consensus 408 ~I~~l~~~~~~~eaK~~L~e~Id~fi~E~i~~A~~~Ia~~a~~~I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~E 487 (640)
.....+.++.++.+.+.+++|+++ +..+.+.|++.++++|+||++|||||+|++|+.+|+.|++.|++|+|||+|
T Consensus 78 ----~~~~~~~~~~~~~~~~~~~~~i~~-~~~a~~~ia~~~a~~i~dg~~IlTh~~S~~v~~~l~~A~~~~k~~~V~VtE 152 (301)
T COG1184 78 ----DSSGGDKENRRQSLIKAAQEFIDR-VEKAKERIAEIGAERIHDGDVILTHSFSKTVLEVLKTAADRGKRFKVIVTE 152 (301)
T ss_pred ----cccccchhhHHHHHHHhHHHHHHH-HHHHHHHHHHHHHhhccCCCEEEEecCcHHHHHHHHHhhhcCCceEEEEEc
Confidence 223346788899999999999976 688999999999999999999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEeccccc
Q 006577 488 SRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYK 567 (640)
Q Consensus 488 SRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~aetyK 567 (640)
|||.+||+.|++.|.+.||+|++|+|++++++|++||+||||||+|++||+++||+||++||++||++++|||||||+||
T Consensus 153 SRP~~eG~~~ak~L~~~gI~~~~I~Dsa~~~~~~~vd~VivGad~I~~nG~lvnkiGT~~lA~~A~e~~~Pf~v~aesyK 232 (301)
T COG1184 153 SRPRGEGRIMAKELRQSGIPVTVIVDSAVGAFMSRVDKVLVGADAILANGALVNKIGTSPLALAARELRVPFYVVAESYK 232 (301)
T ss_pred CCCcchHHHHHHHHHHcCCceEEEechHHHHHHHhCCEEEECccceecCCcEEeccchHHHHHHHHHhCCCEEEEeeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCcccccccCccCcccCCCCCcccCccccccccCCC--------Ccccccchhhhhcc
Q 006577 568 FHERVQLDSICSNELGMHSKNMGTPNTSFRTHALWLLIQVSCL--------QVILIPFQRFLGER 624 (640)
Q Consensus 568 f~~~~~~ds~i~nElrdP~Evl~~~g~~~~~~~~nPaFDVTP~--------eli~iP~s~~~~~~ 624 (640)
|++++++|....+|++|++|+.... .+......||+||+||+ |+|++|++.+++++
T Consensus 233 f~p~~~~~~~~~~~~~~~~e~~~~~-~~~~~~v~Np~fD~TP~~~Id~iITe~G~~pp~~~~~i~ 296 (301)
T COG1184 233 FVPKTLLDTLVEIELRDPLEVAREE-PLGNLKVRNPAFDVTPPEYIDAIITELGIIPPSSIYRIL 296 (301)
T ss_pred ccccccCCCcceeeccChhhccccC-cccCccccccccCCCcHHHhheeeecCCCCCchhHHHHH
Confidence 9999999999999999999998432 22256889999999999 56678999866643
No 13
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=100.00 E-value=9.5e-59 Score=474.73 Aligned_cols=270 Identities=36% Similarity=0.519 Sum_probs=236.4
Q ss_pred CChhHHHHHHHHHHHHHHHHHccCCCCCccchHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHhcCCCCCHHHHH
Q 006577 343 DICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAK 422 (640)
Q Consensus 343 a~~Gsnaraiaml~Alk~vI~dy~~p~~~t~srdL~~~L~~~i~~L~~aRPtsvsm~NAIr~lk~~I~~l~~~~~~~eaK 422 (640)
++.|++++|++++.+|++++.++.++ ...+|++.|+.++++|.++||++++|+|+++++++.+..+....+.++.+
T Consensus 1 qi~Gs~~~ai~al~~L~~~i~~~~~~----~~~el~~~L~~~~~~L~~arP~~~~l~n~v~~~~~~i~~~~~~~~~~~~~ 76 (282)
T PF01008_consen 1 QIRGSPAIAIAALEALRQVISDSKAT----TVQELIEELRKAAKRLIKARPTSVSLGNAVRRILREIRKLDESEDFEEAK 76 (282)
T ss_dssp SSSSHHHHHHHHHHHHHHHHHHCHCS----SHHHHHHHHHHHHHHHHTSSTS-HHHHHHHHHHHHHHHHHHTTSSHHHHH
T ss_pred CccChHHHHHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHhhhhhhhhcccchHHHH
Confidence 36789999999999999999998764 57789999999999999999999999999999999887766677899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHH
Q 006577 423 ATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLV 502 (640)
Q Consensus 423 ~~L~e~Id~fi~E~i~~A~~~Ia~~a~~~I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~ 502 (640)
+.+++.+++|++| +..+.+.|++++.++|++|++|||||||++|+.+|+.|+++|++|+|||+||||++||+.|+++|.
T Consensus 77 ~~l~~~i~~~~~e-~~~~~~~I~~~~~~~I~~~~~ILT~~~S~~v~~~l~~a~~~~~~~~V~v~es~P~~eG~~~a~~L~ 155 (282)
T PF01008_consen 77 QSLLEAIDEFLDE-IEQAREKIADHASELINDGDTILTHGYSSTVERFLLSAKKKGKKFRVIVLESRPYNEGRLMAKELA 155 (282)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHHCCC-TTEEEEEES--SHHHHHHHHHHHTTEEEEEEEE--TTTTHHHTHHHHHH
T ss_pred HHHHHHHHHHHhH-HHHHHHHHHHHHHHhccCCeEEEEeCCchHHHHHHHHHHHcCCeEEEEEccCCcchhhhhHHHHhh
Confidence 9999999999998 789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCceEEEechHHHHHhhh-ccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEecccccccccccCCCccccc
Q 006577 503 RKGLSCTYTHINAISYIIHE-VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNE 581 (640)
Q Consensus 503 ~~GI~vTlI~DsAv~~iM~~-VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~aetyKf~~~~~~ds~i~nE 581 (640)
+.||+|+||+|++++|+|++ ||+||+|||+|++||+++||+||+++|++||+|+|||||||++|||+++++++....||
T Consensus 156 ~~gi~v~~i~d~~~~~~m~~~vd~VliGad~v~~nG~v~nk~Gt~~~a~~Ak~~~vPv~v~~~~~K~~~~~~~~~~~~~e 235 (282)
T PF01008_consen 156 EAGIPVTLIPDSAVGYVMPRDVDKVLIGADAVLANGGVVNKVGTLQLALAAKEFNVPVYVLAESYKFSPRYPLDQDSFNE 235 (282)
T ss_dssp HTT-EEEEE-GGGHHHHHHCTESEEEEE-SEEETTS-EEEETTHHHHHHHHHHTT-EEEEE--GGGBETTCSSGGGSSS-
T ss_pred hcceeEEEEechHHHHHHHHhCCeeEEeeeEEecCCCEeehhhHHHHHHHHHhhCCCEEEEcccccccccccccchhhhh
Confidence 99999999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccCcccCCCCCc---ccCccccccccCCCCcccccc
Q 006577 582 LGMHSKNMGTPNTSF---RTHALWLLIQVSCLQVILIPF 617 (640)
Q Consensus 582 lrdP~Evl~~~g~~~---~~~~~nPaFDVTP~eli~iP~ 617 (640)
+++|+|++...+... ....+||.||+||+++|.+-+
T Consensus 236 ~~~~~~v~~~~~~~~~~~~v~~~~p~~D~tP~~~It~~i 274 (282)
T PF01008_consen 236 LRDPQEVLPFDGSSIVPENVDVINPLFDYTPPDLITLII 274 (282)
T ss_dssp B--THHHHEETTEEESTTTEEEE-BSEEEEEGGG-SEEE
T ss_pred ccccceeeccCCcccccceeeccCccEeecCHHHCCEEE
Confidence 999999998777654 447899999999998886543
No 14
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=100.00 E-value=1.3e-57 Score=468.85 Aligned_cols=256 Identities=23% Similarity=0.272 Sum_probs=227.0
Q ss_pred hhhhhhcccchhHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHccCCCCCccchHHHHHHHHHHHHHHHhcCCcccc
Q 006577 318 LQSKFFQLDTLHPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVS 397 (640)
Q Consensus 318 ~e~~~~ai~~mhPavv~Lgl~~~rGa~~Gsnaraiaml~Alk~vI~dy~~p~~~t~srdL~~~L~~~i~~L~~aRPtsvs 397 (640)
+.+....+++|. + ||++.++.+++++++++.+.. + ..++++.|+...++|.++|||++|
T Consensus 6 ~~~~~~~i~~m~---v-------rGAp~i~~~aa~~l~~~a~~~-~----------~~~~~~~l~~~~~~L~~aRPTavn 64 (275)
T PRK08335 6 VREILEEMKAER---I-------RGASWLAKKGAEAYLLLAEEL-D----------GEELENALKELREEIPEVNPTMAS 64 (275)
T ss_pred HHHHHHHHhhce---e-------cCHHHHHHHHHHHHHHHHHhc-C----------hHHHHHHHHHHHHHHHHcCCcHHh
Confidence 344455567777 7 999999999999988776542 1 146778899999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEeecCcHHHHHHHHHHHHc
Q 006577 398 MGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHEL 477 (640)
Q Consensus 398 m~NAIr~lk~~I~~l~~~~~~~eaK~~L~e~Id~fi~E~i~~A~~~Ia~~a~~~I~dgdvILT~g~SstV~~vL~~A~e~ 477 (640)
|.|++++|. .++.++.+.+.+++|++| +..++++|+++|.++|.+|++|||||||++|+++|+.|+++
T Consensus 65 L~~a~~~~~-----------~~~~~~~~~~~a~~~~~~-~~~~~~~I~~~a~~~I~~g~~ILTh~~S~tv~~~l~~A~~~ 132 (275)
T PRK08335 65 LYNLARFIP-----------ITNNPELVKSRAEEFLRL-MEEAKREIGNIGSELIDDGDVIITHSFSSAVLEILKTAKRK 132 (275)
T ss_pred HHHHHHHhc-----------hhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCCCEEEEECCcHHHHHHHHHHHHc
Confidence 999999971 245677889999999987 57899999999999999999999999999999999999999
Q ss_pred CCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCC
Q 006577 478 GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHI 557 (640)
Q Consensus 478 Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~V 557 (640)
|++|+|||+||||++||++|+|+|.+.||+||||+|++++|+|++||+||+|||+|++||+++||+|||++|++||+|+|
T Consensus 133 gk~~~V~v~EsrP~~qG~~la~eL~~~GI~vtlI~Dsa~~~~m~~vd~VivGAD~I~~nG~v~NKiGT~~lA~~Ak~~~v 212 (275)
T PRK08335 133 GKRFKVILTESAPDYEGLALANELEFLGIEFEVITDAQLGLFAKEATLALVGADNVTRDGYVVNKAGTYLLALACHDNGV 212 (275)
T ss_pred CCceEEEEecCCCchhHHHHHHHHHHCCCCEEEEeccHHHHHHHhCCEEEECccEEecCCCEeehhhHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEecccccccccccCCCcccccccCccCcccCCCCCcccCccccccccCCCCcccc
Q 006577 558 PVLVCCEAYKFHERVQLDSICSNELGMHSKNMGTPNTSFRTHALWLLIQVSCLQVILI 615 (640)
Q Consensus 558 PVyV~aetyKf~~~~~~ds~i~nElrdP~Evl~~~g~~~~~~~~nPaFDVTP~eli~i 615 (640)
|||||||+|||++.+..+ .+.+|++++. .....++||+||+||++||..
T Consensus 213 PfyV~a~~~k~~~~~~~~-~i~ieer~~~--------~~~~~v~Np~FDvTP~~lIt~ 261 (275)
T PRK08335 213 PFYVAAETFKFHPELKSE-EVELVERPYA--------RQGHRVRNVLFDVTPWKYVRG 261 (275)
T ss_pred CEEEECccceecccCCCC-CccccccCCC--------CCCceecCcCccCCCHHHCCE
Confidence 999999999999998877 6667777652 112368999999999977744
No 15
>KOG1468 consensus Predicted translation initiation factor related to eIF-2B alpha/beta/delta subunits (CIG2/IDI2) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.2e-56 Score=447.86 Aligned_cols=295 Identities=18% Similarity=0.227 Sum_probs=266.1
Q ss_pred cceec--ccCCCceecccCcchhhhhhcccchhHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHccCCCCCccchHH
Q 006577 299 RVELF--RHLPQYEHGTQLPVLQSKFFQLDTLHPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRD 376 (640)
Q Consensus 299 ~V~lf--~hLP~~~~~~~l~~~e~~~~ai~~mhPavv~Lgl~~~rGa~~Gsnaraiaml~Alk~vI~dy~~p~~~t~srd 376 (640)
.+++| +.||.+..|+.+.+++|.|..|+.|+ + ||+|+++...|+.++..++. ..+. .++.
T Consensus 12 sl~vLDQllLP~e~kYi~v~~v~d~~~vIk~Mq---V-------RGAPaIAivg~Lslaveiq~--~~~~------~~ds 73 (354)
T KOG1468|consen 12 SLEVLDQLLLPYETKYIPVRGVSDAWAVIKSMQ---V-------RGAPAIAIVGSLSLAVEIQK--KGFP------GSDS 73 (354)
T ss_pred hHhHHHHhhCcCceeEEEecchhHHHHHHHHHh---h-------cCccHHHHHHHHHHHHHHhh--ccCC------chHH
Confidence 57888 89999999999999999999999999 8 99999999999998888766 3333 3456
Q ss_pred HHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--
Q 006577 377 LTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRD-- 454 (640)
Q Consensus 377 L~~~L~~~i~~L~~aRPtsvsm~NAIr~lk~~I~~l~~~~~~~eaK~~L~e~Id~fi~E~i~~A~~~Ia~~a~~~I~d-- 454 (640)
+.++|...++||.++|||+|||.|+.+.|+..+.+... ++...++.++++.+++++++ ...|..|+.++++++.+
T Consensus 74 ~~~~i~~kl~fLvssRPTAVnl~~aa~~lk~i~~~~~~--~~~~~~~~~~~~~e~ml~~d-l~~N~~ig~~g~~~Llq~~ 150 (354)
T KOG1468|consen 74 LKEFIINKLNFLVSSRPTAVNLANAANELKPIAASEDK--SEKAKREKCISYTEDMLEKD-LADNRAIGDNGAKELLQAV 150 (354)
T ss_pred HHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHHHHHHHH-HhhhhhhhHHHHHHHHHhc
Confidence 78899999999999999999999999999999877532 34667888888888888775 56788999999988743
Q ss_pred ----CCEEEeecCcH--------HHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHH-HHHHhCCCceEEEechHHHHHhh
Q 006577 455 ----GDVLLTYGSSS--------AVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL-RRLVRKGLSCTYTHINAISYIIH 521 (640)
Q Consensus 455 ----gdvILT~g~Ss--------tV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La-~eL~~~GI~vTlI~DsAv~~iM~ 521 (640)
.-+||||||++ +.+++|+..|+.|+.-+|||+|||||+||.||+ .||+...||.|+|+|||++|+|+
T Consensus 151 ~~~~kltVlThCNTGSLATagyGTALGVIRsLh~~grLehvyctETRPyNQGsRLTA~ELvhekiPatLItDS~vA~~m~ 230 (354)
T KOG1468|consen 151 KDKGKLTVLTHCNTGSLATAGYGTALGVIRSLHSLGRLEHVYCTETRPYNQGSRLTAFELVHEKIPATLITDSMVAAAMK 230 (354)
T ss_pred CCCCceEEEEeecCCchhhcccchHHHHHHHHHhcCCcceEEecccccCCcccchhhHHHHhccCcchhhhhHHHHHHHh
Confidence 35899999985 479999999999999999999999999999997 99999999999999999999999
Q ss_pred --hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEecccccccccccCCCcccccccCccCcccCCC---CCc
Q 006577 522 --EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGMHSKNMGTPN---TSF 596 (640)
Q Consensus 522 --~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~aetyKf~~~~~~ds~i~nElrdP~Evl~~~g---~~~ 596 (640)
+||.|++|||+|..||+.+||||||++|++||||||||||++|...++.....+..+.+|+|+|.|+..+.| +.+
T Consensus 231 ~~~vdavvvGADrVarNGDTANKIGTy~LAv~aKhhgipFyvaaP~tsid~~l~tG~eIiIEERp~~Em~~v~gg~~v~I 310 (354)
T KOG1468|consen 231 NHQVDAVVVGADRVARNGDTANKIGTYQLAVLAKHHGIPFYVAAPFTSIDLSLATGDEIIIEERPPAEMTHVTGGEGVRI 310 (354)
T ss_pred cCCCCEEEEcccceeccCcchhhhhhhHHHHHHHhcCCceEEeccccccccccCCCCeeEEeecCchHheeecCCcceEe
Confidence 899999999999999999999999999999999999999999999999999999999999999999999984 444
Q ss_pred cc---CccccccccCCCCccc
Q 006577 597 RT---HALWLLIQVSCLQVIL 614 (640)
Q Consensus 597 ~~---~~~nPaFDVTP~eli~ 614 (640)
.. .+|||+|||||++||.
T Consensus 311 aapgi~vwnPAFDvTPa~LIt 331 (354)
T KOG1468|consen 311 AAPGINVWNPAFDVTPAELIT 331 (354)
T ss_pred cCCCCCccCccccCCHHHHHH
Confidence 33 7899999999999883
No 16
>KOG1465 consensus Translation initiation factor 2B, beta subunit (eIF-2Bbeta/GCD7) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.6e-48 Score=393.73 Aligned_cols=287 Identities=23% Similarity=0.299 Sum_probs=265.0
Q ss_pred HHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHccCCCCCccchHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHH
Q 006577 331 AVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIA 410 (640)
Q Consensus 331 avv~Lgl~~~rGa~~Gsnaraiaml~Alk~vI~dy~~p~~~t~srdL~~~L~~~i~~L~~aRPtsvsm~NAIr~lk~~I~ 410 (640)
.+..+...+..+.+.|+.+.|+.++..|+++|.+..|+ ...+|.+.++..++.|..+.|+..+.+|.+||+++.|+
T Consensus 10 ~i~~fI~~lk~r~v~gS~aiA~eTl~llr~iIs~~rw~----~~n~Li~~vr~~g~~L~~A~psE~~~gNiirrIlkliR 85 (353)
T KOG1465|consen 10 EISEFIAALKKRLVRGSYAIAIETLNLLRQIISRERWS----TANDLIESVRDVGKKLHAAQPSELSCGNIIRRILKLIR 85 (353)
T ss_pred HHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHhhCcc----cHHHHHHHHHHHHHHhhhcCCchhhhhHHHHHHHHHHH
Confidence 44566777779999999999999999999999988885 57799999999999999999999999999999999998
Q ss_pred hcCC---------C-------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 006577 411 KIPI---------S-------------------------LSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGD 456 (640)
Q Consensus 411 ~l~~---------~-------------------------~~~~eaK~~L~e~Id~fi~E~i~~A~~~Ia~~a~~~I~dgd 456 (640)
++.. + .+..+.|+.+++.|++.+.| |+..++.|+.++.++|++++
T Consensus 86 eE~~~l~~~~~s~~s~~~~Sl~kLl~~~~e~~~~~~~S~~~~~~lr~~~i~~I~eli~E-ie~~~E~Ia~Qa~ehihsnE 164 (353)
T KOG1465|consen 86 EEVLELTGGATSDESSPSESLHKLLQSTEESHTNKKLSSADAKKLRKDLIEGIKELITE-IEGSRENIAVQAIEHIHSNE 164 (353)
T ss_pred HHHHHHhccCCCCCCchHHHHHHHHhCCCccccccccccccHHHHHHHHHHHHHHHHHH-HhhhhHhHHHHHHHHhccCc
Confidence 7421 0 01234789999999999998 78999999999999999999
Q ss_pred EEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEcceeEecC
Q 006577 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSN 536 (640)
Q Consensus 457 vILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGADaIlaN 536 (640)
+|||+|.|.+|+.||+.|.++|++|+|+|.|.-|.+||+.|++.|.++||.+|+|+|++++.+|++|+|||+|+++|++|
T Consensus 165 viLT~g~SrTV~~FL~~A~kk~Rkf~viVaE~~p~~qgH~~Ak~la~~giettVI~daaVfA~MsrVnKVIigt~avl~N 244 (353)
T KOG1465|consen 165 VILTLGSSRTVENFLKHAAKKGRKFRVIVAEGAPNNQGHELAKPLAQAGIETTVIPDAAVFAMMSRVNKVIIGTHAVLAN 244 (353)
T ss_pred eEEecCccHHHHHHHHHHHhccCceEEEEeecCCcccchHhhHHHHHcCCeeEEeccHHHHHHhhhcceEEEEeeeEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeecccchHHHHHHHhhCCCcEEEecccccccccccCCCcccccccCccCcccCCCCCc--ccCccccccccCCCCccc
Q 006577 537 GTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGMHSKNMGTPNTSF--RTHALWLLIQVSCLQVIL 614 (640)
Q Consensus 537 G~VvNKiGT~~lAlaAk~~~VPVyV~aetyKf~~~~~~ds~i~nElrdP~Evl~~~g~~~--~~~~~nPaFDVTP~eli~ 614 (640)
|++....|++++|++||+|.+|||||++.||+|+-++++.+..+|++.|+++++++..+. ...++||.||+.|+||+.
T Consensus 245 Ggl~~~~G~~~vAlaAk~h~vPv~VlAp~yKLsPlyp~~~ds~~~f~s~~~il~~~e~~~~~~~~v~nP~fDyvppeLVt 324 (353)
T KOG1465|consen 245 GGLRAPSGVHTVALAAKHHSVPVIVLAPMYKLSPLYPTNPDSFHEFRSPSEILPFSEGDPAGRVDVLNPAFDYVPPELVT 324 (353)
T ss_pred CCeeccchHHHHHHHHHhcCCcEEEecchhhcCCCCCCCHHHHHhcCCcccccCccccCcccceeecccccccCChhhee
Confidence 999999999999999999999999999999999999999999999999999999876433 347899999999999997
Q ss_pred c--------cchhhhh
Q 006577 615 I--------PFQRFLG 622 (640)
Q Consensus 615 i--------P~s~~~~ 622 (640)
| +||.+||
T Consensus 325 LFIsNtgg~~PSyvyR 340 (353)
T KOG1465|consen 325 LFISNTGGVAPSYVYR 340 (353)
T ss_pred EEEecCCCCChHHHHH
Confidence 7 7999998
No 17
>KOG1466 consensus Translation initiation factor 2B, alpha subunit (eIF-2Balpha/GCN3) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.4e-45 Score=365.81 Aligned_cols=281 Identities=23% Similarity=0.271 Sum_probs=234.0
Q ss_pred HHhhcCCChhHHHHHHHHHHHHHHHHHccCCCCCccchHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHhc--CC
Q 006577 337 LQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKI--PI 414 (640)
Q Consensus 337 l~~~rGa~~Gsnaraiaml~Alk~vI~dy~~p~~~t~srdL~~~L~~~i~~L~~aRPtsvsm~NAIr~lk~~I~~l--~~ 414 (640)
+++.+..+-.+ -++|.+.+|-++++... .++..+|...|+...+.|++.-++++++..+.+.+.+.+..- .+
T Consensus 18 ~~~l~eDpd~a--~~vAAIraL~~vL~~s~----a~Ti~el~~~l~~a~~tL~~~d~ss~Sl~agcdlF~Rfvtr~slld 91 (313)
T KOG1466|consen 18 LSFLQEDPDLA--MAVAAIRALLEVLRRSQ----ATTIAELENELKSASATLKKTDTSSISLRAGCDLFMRFVTRASLLD 91 (313)
T ss_pred HHHHhcCchhh--hHHHHHHHHHHHHhhcc----cchHHHHHHHHHHHHHHHHccCccchhhhhhhHHHHHHHHhhhhhh
Confidence 33444545433 45667777777776432 357889999999999999999999999999988887776542 34
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchH
Q 006577 415 SLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEG 494 (640)
Q Consensus 415 ~~~~~eaK~~L~e~Id~fi~E~i~~A~~~Ia~~a~~~I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG 494 (640)
..+.+++|++++|..+.|++. ...++..|+..+.+||.||++|||||||.+|+.+|..|+++++.|+|||+||||..+|
T Consensus 92 ~~Df~~ck~~l~erg~~F~~~-~~~sR~~IA~l~~~Fi~dg~~ILtHg~SRvVl~~L~~Aa~~~~~F~V~vTEsrPd~sG 170 (313)
T KOG1466|consen 92 YEDFEQCKQHLLERGELFIER-ARKSRQKIAMLAQDFITDGCTILTHGYSRVVLEVLLTAAQNKKRFRVYVTESRPDGSG 170 (313)
T ss_pred hhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhHhhCCCEEEEcchhHHHHHHHHHHHhcCceEEEEEecCCCCCch
Confidence 457899999999999999965 5788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCceEEEechHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEecccccccccccC
Q 006577 495 KLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQL 574 (640)
Q Consensus 495 ~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~aetyKf~~~~~~ 574 (640)
..|+++|.+.|||||++.|+|++|.|.+||+||||||.|..||+++|+||||++|++||+.++|||||+|+|||.+.+++
T Consensus 171 ~lm~~~L~~~~IPvtlvlDSaVgyvMe~vD~VlVGAEGVvEsGGIIN~iGTyq~~v~Ak~~~kPfYV~AES~KFvRlfPL 250 (313)
T KOG1466|consen 171 KLMAKELKKLGIPVTLVLDSAVGYVMERVDLVLVGAEGVVESGGIINKIGTYQVAVCAKSMNKPFYVVAESHKFVRLFPL 250 (313)
T ss_pred hHHHHHHHhcCCCeEEEehhhHHHHHhhccEEEEccceeeecCceeeecccchhhhhHHhcCCCeEEEeeccceeeeccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC-cccccccCccCccc-CCCCCcccCccccccccCCCCcc--------cccchhhhhcccc
Q 006577 575 DS-ICSNELGMHSKNMG-TPNTSFRTHALWLLIQVSCLQVI--------LIPFQRFLGERTS 626 (640)
Q Consensus 575 ds-~i~nElrdP~Evl~-~~g~~~~~~~~nPaFDVTP~eli--------~iP~s~~~~~~~~ 626 (640)
++ +++++++ |-+... .+. ..+...-+|..|+||+|++ +|-||.+..||-+
T Consensus 251 nQ~Dlp~~~~-p~~f~~~~~~-~~~~~~e~p~vDYTpPeyiTlL~TDLGvltPSaVsdELIK 310 (313)
T KOG1466|consen 251 NQKDLPPALP-PFKFSRPVPE-REDVEREHPTVDYTPPEYLTLLFTDLGVLTPSAVSDELIK 310 (313)
T ss_pred cccccccccC-CcccCCCCCc-HHhhhhcCCCcccChHHHHHHHHhhccccChhhhhHHHHH
Confidence 76 3555532 222211 110 0122455799999999655 4445667777654
No 18
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=100.00 E-value=1.6e-42 Score=353.13 Aligned_cols=205 Identities=18% Similarity=0.159 Sum_probs=168.2
Q ss_pred HHHHHHhcCCccccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEeecC
Q 006577 384 YVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGS 463 (640)
Q Consensus 384 ~i~~L~~aRPtsvsm~NAIr~lk~~I~~l~~~~~~~eaK~~L~e~Id~fi~E~i~~A~~~Ia~~a~~~I~dgdvILT~g~ 463 (640)
.++.|.+.||.+.-+.|..++++..- +...++.+.. +..+.+.|+++|.++| +|++|||||+
T Consensus 34 ~~~~l~~~~~~Ma~~~n~~~~~~~~~-----~~~~~~~~~~------------~~~~~~~~~~~A~~~i-~~dvILT~s~ 95 (253)
T PRK06372 34 IIKDLKNYFFGMGLVRNVCDSIISGP-----NLRPKNLKLG------------IEKHEKMAIEHAKPLF-NDSVIGTISS 95 (253)
T ss_pred HHHHHHHhCcchHHHHHHHHHHHccC-----cCCHHHHHHH------------HHHHHHHHHHHHHhhc-CCCEEEEeCC
Confidence 67778889999999999988887432 1223333322 2357788999999999 6799999999
Q ss_pred cHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEcceeEecCCCeeccc
Q 006577 464 SSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRV 543 (640)
Q Consensus 464 SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGADaIlaNG~VvNKi 543 (640)
|++|+.+|..+ ++.|+|||+||||++||+.|+++|.+.||+||||+|++++++|++||+||+|||+|++||+++||+
T Consensus 96 S~~v~~~l~~~---~~~~~V~v~ESrP~~eG~~~a~~L~~~GI~vtli~Dsa~~~~m~~vd~VlvGAd~V~~nG~v~nkv 172 (253)
T PRK06372 96 SQVLKAFISSS---EKIKSVYILESRPMLEGIDMAKLLVKSGIDVVLLTDASMCEAVLNVDAVIVGSDSVLYDGGLIHKN 172 (253)
T ss_pred cHHHHHHHHhc---CCCCEEEEecCCCchHHHHHHHHHHHCCCCEEEEehhHHHHHHHhCCEEEECccEEecCCCEeehh
Confidence 99999999764 345899999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHhhCCCcEEEecccccccccccCCCcccccccCccCcccCCCCCcccCccccccccCCCCcccc
Q 006577 544 GTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGMHSKNMGTPNTSFRTHALWLLIQVSCLQVILI 615 (640)
Q Consensus 544 GT~~lAlaAk~~~VPVyV~aetyKf~~~~~~ds~i~nElrdP~Evl~~~g~~~~~~~~nPaFDVTP~eli~i 615 (640)
||+++|++||+|+|||||||++|||+++++.+.....+.. |. .........+||.||+||++||.+
T Consensus 173 GT~~~Al~A~~~~vPv~V~~~s~Kf~~~~~~~~~~~~~~~-~~-----~~~~~~l~v~Np~FD~TPpelI~~ 238 (253)
T PRK06372 173 GTFPLALCARYLKKPFYSLTISMKIERNFLYSTYPNFKNH-PC-----SEWNIDIPCINRYFDKTPPDLIDY 238 (253)
T ss_pred hHHHHHHHHHHcCCCEEEEeeccccCCCCccccccccccc-cc-----ccCCCCCceeCcCcCCCCHHHCCE
Confidence 9999999999999999999999999998776543211111 10 111124578999999999976643
No 19
>TIGR00021 rpiA ribose 5-phosphate isomerase. This model describes ribose 5-phosphate isomerase, an enzyme of the non-oxidative branch of the pentose phosphate pathway.
Probab=97.47 E-value=0.0017 Score=66.14 Aligned_cols=124 Identities=19% Similarity=0.167 Sum_probs=81.3
Q ss_pred HHHHHHHHHhccCCCEEEeecCcHHHHHHHHHHHHcCC----eeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHH
Q 006577 442 RVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGK----QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAIS 517 (640)
Q Consensus 442 ~~Ia~~a~~~I~dgdvILT~g~SstV~~vL~~A~e~Gk----~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~ 517 (640)
+.|++.|+++|++|++|. .+.++++..+++...+..+ +++|+- .+...+..|.+.||++..+
T Consensus 3 ~~IA~~A~~~I~~g~~I~-ldsGST~~~~~~~L~~~~~~~~l~itvVt-------~S~~~a~~l~~~gi~v~~l------ 68 (218)
T TIGR00021 3 RAAAEAAAEYVEDGMVVG-LGTGSTVAYFIEALGERVKQEGLDIVGVP-------TSKQTAELARELGIPLSSL------ 68 (218)
T ss_pred HHHHHHHHHhCCCCCEEE-ECCcHHHHHHHHHHHHhhhccCCCEEEEe-------CCHHHHHHHHHCCCCEEcH------
Confidence 468889999999999875 5777777777766654322 344432 1234457777789987511
Q ss_pred HHhhhccEEEEcceeEecCCCeecccchHHHH---HHHhhCCCcEEEecccccccccccCCCcccccc
Q 006577 518 YIIHEVTRVFLGASSVLSNGTVCSRVGTACVA---MVAYGFHIPVLVCCEAYKFHERVQLDSICSNEL 582 (640)
Q Consensus 518 ~iM~~VdkVlvGADaIlaNG~VvNKiGT~~lA---laAk~~~VPVyV~aetyKf~~~~~~ds~i~nEl 582 (640)
.-+.++|..|.|||.|-.|++++ |-|.-.+. ++| ....-++++|+..||.++.- ...++.|.
T Consensus 69 ~~~~~iDiafdGaD~id~~~~~i-kg~g~a~~~eKiia-~~A~~~i~l~D~sK~~~~lg-~~plPvEV 133 (218)
T TIGR00021 69 DEVPELDLAIDGADEVDPNLQLI-KGGGGALLREKIVA-SASKRFIVIADESKLVDKLG-KFPLPVEV 133 (218)
T ss_pred hHCCccCEEEECCCeECCCCCEe-cccHHHHHHHHHHH-HhhCcEEEEEEchhhhcccC-CCCccEEE
Confidence 12337999999999999999885 44332211 222 23347899999999987543 33455663
No 20
>PRK00702 ribose-5-phosphate isomerase A; Provisional
Probab=97.40 E-value=0.0026 Score=64.97 Aligned_cols=127 Identities=13% Similarity=0.092 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHhccCCCEEEeecCcHHHHHHHHHHHHcCC---eeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHH
Q 006577 440 ADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGK---QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAI 516 (640)
Q Consensus 440 A~~~Ia~~a~~~I~dgdvILT~g~SstV~~vL~~A~e~Gk---~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv 516 (640)
..+.|++.|+++|++|++|. .+.++++..+++...+..+ +++++ - .....+..|.+.||++..+.
T Consensus 6 ~K~~IA~~Aa~lI~dg~~Ig-LgsGST~~~l~~~L~~~~~~~~~itvV--t-----~S~~~a~~l~~~gi~v~~l~---- 73 (220)
T PRK00702 6 LKKAAAEAAAEYVEDGMIVG-LGTGSTAAYFIDALGERVKEGLIIGGV--P-----TSEASTELAKELGIPLFDLN---- 73 (220)
T ss_pred HHHHHHHHHHHhCCCCCEEE-ECCcHHHHHHHHHHHhhhccCCCEEEE--C-----CcHHHHHHHHhCCCeEEcHH----
Confidence 35678999999999999874 5777888777777654321 34443 1 12334566667888865221
Q ss_pred HHHhhhccEEEEcceeEecCCCeecccchHHH--HHHHhhCCCcEEEecccccccccccCCCcccccc
Q 006577 517 SYIIHEVTRVFLGASSVLSNGTVCSRVGTACV--AMVAYGFHIPVLVCCEAYKFHERVQLDSICSNEL 582 (640)
Q Consensus 517 ~~iM~~VdkVlvGADaIlaNG~VvNKiGT~~l--AlaAk~~~VPVyV~aetyKf~~~~~~ds~i~nEl 582 (640)
-+.++|..|.|||.|-.+++++---|-..+ -++|+.-+ -+|+++...||.++.- ...++.|.
T Consensus 74 --~~~~iD~afdGaD~vd~~~~~ikg~g~a~~~ekiva~~A~-~~vil~D~sK~v~~lg-~~~lPvEV 137 (220)
T PRK00702 74 --EVDSLDLYVDGADEIDPHLNLIKGGGAALTREKIVAAAAK-RFICIVDESKLVDVLG-KFPLPVEV 137 (220)
T ss_pred --HCCccCEEEECCCeECCCCCcEECcHHHHHHHHHHHHhcC-cEEEEEEcchhhhhcC-CCCccEEE
Confidence 124799999999999999887777554433 44544443 4888999999988643 23455553
No 21
>cd01398 RPI_A RPI_A: Ribose 5-phosphate isomerase type A (RPI_A) subfamily; RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. This reaction leads to the conversion of phosphosugars into glycolysis intermediates, which are precursors for the synthesis of amino acids, vitamins, nucleotides, and cell wall components. In plants, RPI is part of the Calvin cycle as ribulose 5-phosphate is the carbon dioxide receptor in the first dark reaction of photosynthesis. There are two unrelated types of RPIs (A and B), which catalyze the same reaction, at least one type of RPI is present in an organism. RPI_A is more widely distributed than RPI_B in bacteria, eukaryotes, and archaea.
Probab=97.25 E-value=0.0029 Score=64.00 Aligned_cols=126 Identities=19% Similarity=0.128 Sum_probs=81.2
Q ss_pred HHHHHHHHHhccCCCEEEeecCcHHHHHHHHHHHHcC----CeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHH
Q 006577 442 RVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELG----KQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAIS 517 (640)
Q Consensus 442 ~~Ia~~a~~~I~dgdvILT~g~SstV~~vL~~A~e~G----k~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~ 517 (640)
+.|++.|+++|.+|++|. .+.++++..+++...+.. ++++|+ +-| ...+..|.+.|+++..+-
T Consensus 3 ~~IA~~A~~~I~~g~~I~-ldsGST~~~l~~~L~~~~~~~~~~itvV-TnS------~~~a~~l~~~~i~vi~lg----- 69 (213)
T cd01398 3 RAAARAAVDYVEDGMVIG-LGTGSTVAYFIEALGERVREEGLNIVGV-PTS------FQTEELARELGIPLTDLD----- 69 (213)
T ss_pred HHHHHHHHHhCCCCCEEE-ECchHHHHHHHHHHHHhhhccCCCEEEE-eCc------HHHHHHHHhCCCeEEeCC-----
Confidence 468889999999999876 477777777777665432 345554 211 223456666688765544
Q ss_pred HHhhhccEEEEcceeEecCCCeecccchHHHHH-HHhhCCCcEEEecccccccccccCCCcccccc
Q 006577 518 YIIHEVTRVFLGASSVLSNGTVCSRVGTACVAM-VAYGFHIPVLVCCEAYKFHERVQLDSICSNEL 582 (640)
Q Consensus 518 ~iM~~VdkVlvGADaIlaNG~VvNKiGT~~lAl-aAk~~~VPVyV~aetyKf~~~~~~ds~i~nEl 582 (640)
---++|+.|+|||.|-.++.++.--|-..+-- +......-+|++++..||..+.- ...++.|.
T Consensus 70 -~~~~~D~af~Gad~id~~~~~~~~~~~a~~kek~i~~~a~~~illaD~sK~~~~l~-~~~lPvEV 133 (213)
T cd01398 70 -EVPRLDLAIDGADEVDPDLNLIKGGGGALLREKIVASAAKKFIVIADESKLVERLG-EFPLPVEV 133 (213)
T ss_pred -CccccCEEEECCCcCCCCcCcccChHHHHHHHHHHHHhcCeEEEEEecchhcccCC-CCCeeEEE
Confidence 11269999999999998875544434333321 22234567899999999988653 23455553
No 22
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after Escherichia coli deoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].
Probab=96.58 E-value=0.036 Score=53.57 Aligned_cols=124 Identities=18% Similarity=0.216 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHhccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhC-CCceEEE-------
Q 006577 440 ADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRK-GLSCTYT------- 511 (640)
Q Consensus 440 A~~~Ia~~a~~~I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~-GI~vTlI------- 511 (640)
..++|++.|+++|++|++|.- +.++++..+.....+. ++++|+-- ....+..|.+. ++++.++
T Consensus 5 ~K~~IA~~A~~~I~~~~~Ifl-d~GtT~~~la~~L~~~-~~ltVvTn-------sl~ia~~l~~~~~~~vi~~GG~~~~~ 75 (161)
T PF00455_consen 5 EKRAIARKAASLIEDGDTIFL-DSGTTTLELAKYLPDK-KNLTVVTN-------SLPIANELSENPNIEVILLGGEVNPK 75 (161)
T ss_pred HHHHHHHHHHHhCCCCCEEEE-ECchHHHHHHHHhhcC-CceEEEEC-------CHHHHHHHHhcCceEEEEeCCEEEcC
Confidence 356899999999999999876 5555666666655432 25555532 23345666665 3333222
Q ss_pred ----echHHHHHhh--hccEEEEcceeEecC-CCeecccchHHHHHHHhhCCCcEEEecccccccccc
Q 006577 512 ----HINAISYIIH--EVTRVFLGASSVLSN-GTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERV 572 (640)
Q Consensus 512 ----~DsAv~~iM~--~VdkVlvGADaIlaN-G~VvNKiGT~~lAlaAk~~~VPVyV~aetyKf~~~~ 572 (640)
.....-..|+ ++|+.|+|+++|..+ |-......-..+--+.-...--+|++|+..||....
T Consensus 76 ~~~~~G~~a~~~l~~~~~d~afi~~~gi~~~~G~~~~~~~~a~vk~~~~~~s~~~ill~D~sKf~~~~ 143 (161)
T PF00455_consen 76 SLSFVGPIALEALRQFRFDKAFIGADGISEEGGLTTSDEEEAEVKRAMIENSKQVILLADSSKFGRNS 143 (161)
T ss_pred CCcEECchHHHHHHhhccceEEecccEecCCCccccchHHHHHHHHHHHHhcCeEEEEeChhhcCCee
Confidence 1112222233 799999999999985 544455666666666666777899999999997753
No 23
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional
Probab=96.47 E-value=0.022 Score=59.02 Aligned_cols=124 Identities=15% Similarity=0.212 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHhccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHh-CC-CceEEEe-----
Q 006577 440 ADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVR-KG-LSCTYTH----- 512 (640)
Q Consensus 440 A~~~Ia~~a~~~I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~-~G-I~vTlI~----- 512 (640)
..+.|++.|+.+|.+|++|+. +.++++..+.+...+. .+++|+.- +...+..|.+ .+ +.+.++-
T Consensus 77 ~K~~IA~~Aa~~I~~g~tIfl-d~GtT~~~la~~L~~~-~~ltVvTn-------sl~ia~~l~~~~~~~~v~l~GG~~~~ 147 (256)
T PRK10434 77 KKELIAEAAVSLIHDGDSIIL-DAGSTVLQMVPLLSRF-NNITVMTN-------SLHIVNALSELDNEQTILMPGGTFRK 147 (256)
T ss_pred HHHHHHHHHHhhCCCCCEEEE-cCcHHHHHHHHHhccC-CCeEEEEC-------CHHHHHHHhhCCCCCEEEEECCEEeC
Confidence 356899999999999999985 6666766666665432 34666532 3345667765 22 4544321
Q ss_pred --chHH----HHHhh--hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEecccccccccc
Q 006577 513 --INAI----SYIIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERV 572 (640)
Q Consensus 513 --DsAv----~~iM~--~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~aetyKf~~~~ 572 (640)
.+.+ -..++ .+|+.|+||+.|-.++++...--...+--++-....-+|++|+..||....
T Consensus 148 ~~~~~~G~~a~~~l~~~~~D~afi~~~gi~~~~G~t~~~~~~~~k~~~~~~a~~~illaD~sKf~~~~ 215 (256)
T PRK10434 148 KSASFHGQLAENAFEHFTFDKLFIGTDGIDLNAGVTTFNEVYTVSKAMCNAAREIILMADSSKFGRKS 215 (256)
T ss_pred CCCeEECHHHHHHHHhCcCCEEEEcCceecCCCCcCCCCHHHHHHHHHHHHcCcEEEEECCcccCCce
Confidence 1122 22233 699999999999988766543323444445555688889999999998653
No 24
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=95.98 E-value=0.042 Score=56.80 Aligned_cols=122 Identities=15% Similarity=0.076 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHhccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhC-CCceEE--------
Q 006577 440 ADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRK-GLSCTY-------- 510 (640)
Q Consensus 440 A~~~Ia~~a~~~I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~-GI~vTl-------- 510 (640)
..+.|++.|+.+|++|++|+. +.++++..+...... ++++|+.- +...+..|.+. ++++.+
T Consensus 79 ~K~~IA~~Aa~~I~~g~~Ifl-d~GsT~~~la~~L~~--~~ltVvTn-------sl~ia~~l~~~~~~~v~l~GG~~~~~ 148 (251)
T PRK13509 79 EKVRIAKAASQLCNPGESVVI-NCGSTAFLLGRELCG--KPVQIITN-------YLPLANYLIDQEHDSVIIMGGQYNKS 148 (251)
T ss_pred HHHHHHHHHHHhCCCCCEEEE-CCcHHHHHHHHHhCC--CCeEEEeC-------CHHHHHHHHhCCCCEEEEECCeEcCC
Confidence 346899999999999999886 455555555655532 34555532 22345666543 333322
Q ss_pred ---EechHHHHHhh--hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEecccccccccc
Q 006577 511 ---THINAISYIIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERV 572 (640)
Q Consensus 511 ---I~DsAv~~iM~--~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~aetyKf~~~~ 572 (640)
+.... ...|. .+|+.|+||+.|-.+|-.........+--++-....-+|++|++.||....
T Consensus 149 ~~~~~G~~-~~~l~~~~~d~aFig~~gi~~~G~~~~~~~e~~~k~~~~~~s~~~illaDssKfg~~~ 214 (251)
T PRK13509 149 QSITLSPQ-GSENSLYAGHWMFTSGKGLTADGLYKTDMLTAMAEQKMLSVVGKLVVLVDSSKIGERA 214 (251)
T ss_pred cceeECHH-HHHHHhCcCCEEEECCCcCCCCcCCCCCHHHHHHHHHHHHHhCcEEEEEcccccCcee
Confidence 12222 24445 689999999999877754444444444444445567789999999998653
No 25
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=95.95 E-value=0.12 Score=54.09 Aligned_cols=123 Identities=16% Similarity=0.184 Sum_probs=79.8
Q ss_pred HHHHHHHHHHhccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHh-CCCceEEE--------
Q 006577 441 DRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVR-KGLSCTYT-------- 511 (640)
Q Consensus 441 ~~~Ia~~a~~~I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~-~GI~vTlI-------- 511 (640)
.+.|++.|+++|.+|++|+- +.++++..+.+... ..++++|+.- +...+..|.+ .++++.++
T Consensus 93 K~~IA~~Aa~~I~dgd~Ifl-d~GtT~~~la~~L~-~~~~ltVvTn-------sl~ia~~l~~~~~~~v~llGG~~~~~~ 163 (269)
T PRK09802 93 KRSVAKAAVELIQPGHRVIL-DSGTTTFEIARLMR-KHTDVIAMTN-------GMNVANALLEAEGVELLMTGGHLRRQS 163 (269)
T ss_pred HHHHHHHHHhhCCCCCEEEE-CCchHHHHHHHhcC-cCCCeEEEeC-------CHHHHHHHHhCCCCEEEEECCEEecCC
Confidence 46799999999999999986 55556555555553 2345776642 2334566664 35555432
Q ss_pred ---echHHHHHhh--hccEEEEcceeEecCCCeec-ccchHHHHHHHhhCCCcEEEecccccccccc
Q 006577 512 ---HINAISYIIH--EVTRVFLGASSVLSNGTVCS-RVGTACVAMVAYGFHIPVLVCCEAYKFHERV 572 (640)
Q Consensus 512 ---~DsAv~~iM~--~VdkVlvGADaIlaNG~VvN-KiGT~~lAlaAk~~~VPVyV~aetyKf~~~~ 572 (640)
.....-..+. .+|+.|+||+.|-.++++.. -.--..+--++-...--+|++|+..||....
T Consensus 164 ~~~~G~~a~~~l~~~~~d~afig~~gi~~~~G~t~~~~~ea~~kr~~i~~s~~~ill~D~sKf~~~~ 230 (269)
T PRK09802 164 QSFYGDQAEQSLQNYHFDMLFLGVDAIDLERGVSTHNEDEARLNRRMCEVAERIIVVTDSSKFNRSS 230 (269)
T ss_pred CceECHHHHHHHHhccCCEEEEcCceecCCCCcCCCCHHHHHHHHHHHHHcCcEEEEEeccccCCcc
Confidence 1122222333 69999999999987766643 4444555555555667779999999997643
No 26
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=95.59 E-value=0.2 Score=51.59 Aligned_cols=122 Identities=13% Similarity=0.139 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHhccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHh-CCCceEEE-------
Q 006577 440 ADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVR-KGLSCTYT------- 511 (640)
Q Consensus 440 A~~~Ia~~a~~~I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~-~GI~vTlI------- 511 (640)
..+.|++.|+++|++|++|+- +.++++..+.....+ +.++|+.- +...+..|.. .++.+.++
T Consensus 79 ~K~~IA~~Aa~lI~~gd~Ifl-d~GtT~~~l~~~L~~--~~ltVvTN-------s~~ia~~l~~~~~~~vil~GG~~~~~ 148 (240)
T PRK10411 79 HKADIAREALAWIEEGMVIAL-DASSTCWYLARQLPD--INIQVFTN-------SHPICQELGKRERIQLISSGGTLERK 148 (240)
T ss_pred HHHHHHHHHHHhCCCCCEEEE-cCcHHHHHHHHhhCC--CCeEEEeC-------CHHHHHHHhcCCCCEEEEECCEEeCC
Confidence 346899999999999999886 555565555555532 24565532 2334555653 34443222
Q ss_pred ----echHHHHHhh--hccEEEEcceeEecCCCeec-ccchHHHHHHHhhCCCcEEEeccccccccc
Q 006577 512 ----HINAISYIIH--EVTRVFLGASSVLSNGTVCS-RVGTACVAMVAYGFHIPVLVCCEAYKFHER 571 (640)
Q Consensus 512 ----~DsAv~~iM~--~VdkVlvGADaIlaNG~VvN-KiGT~~lAlaAk~~~VPVyV~aetyKf~~~ 571 (640)
.....-..++ ++|+.|+||+.|..+|++.. -.=.+.+--.+-....-+|++|+..||...
T Consensus 149 ~~~~~G~~a~~~l~~~~~d~afis~~gi~~~~G~~~~~~~ea~~k~~~~~~a~~~ill~D~sKf~~~ 215 (240)
T PRK10411 149 YGCYVNPSLISQLKSLEIDLFIFSCEGIDSSGALWDSNAINADYKSMLLKRAAQSLLLIDKSKFNRS 215 (240)
T ss_pred CCceECHHHHHHHHhcCCCEEEEeceeECCCCCcccCCHHHHHHHHHHHHHhCcEEEEEeccccCCc
Confidence 1222222333 69999999999987665554 444455555555667778999999999764
No 27
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]
Probab=95.33 E-value=0.25 Score=51.23 Aligned_cols=125 Identities=17% Similarity=0.192 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHhccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCC-CceE---------
Q 006577 440 ADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKG-LSCT--------- 509 (640)
Q Consensus 440 A~~~Ia~~a~~~I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~G-I~vT--------- 509 (640)
....|++.|+++|++|++|+--| +++.+.+.....+ ..+++|+.- +...+..|.... +.+.
T Consensus 77 eK~~IA~~Aa~lI~~g~~ifld~-GTT~~~la~~L~~-~~~ltviTN-------sl~ia~~l~~~~~~~vi~~GG~~~~~ 147 (253)
T COG1349 77 EKRAIAKAAATLIEDGDTIFLDA-GTTTLALARALPD-DNNLTVITN-------SLNIAAALLEKPNIEVILLGGTVRKK 147 (253)
T ss_pred HHHHHHHHHHhhCCCCCEEEECC-CcHHHHHHHHhCc-CCCeEEEeC-------CHHHHHHHHhCCCCeEEEeCcEEEcC
Confidence 35679999999999999998744 4444444444432 233666642 344566666653 3221
Q ss_pred --EEechHHHHHhh--hccEEEEcceeEecCCCeeccc-chHHHHHHHhhCCCcEEEeccccccccccc
Q 006577 510 --YTHINAISYIIH--EVTRVFLGASSVLSNGTVCSRV-GTACVAMVAYGFHIPVLVCCEAYKFHERVQ 573 (640)
Q Consensus 510 --lI~DsAv~~iM~--~VdkVlvGADaIlaNG~VvNKi-GT~~lAlaAk~~~VPVyV~aetyKf~~~~~ 573 (640)
-+.....-..++ .+|+.|+|++.|-.++++...- .-..+.-.+-....-+|+++.+.||.....
T Consensus 148 ~~~~~G~~a~~~l~~~~~d~aFig~~gi~~~~g~~~~~~~ea~~k~~~~~~a~~~~ll~D~sKf~~~~~ 216 (253)
T COG1349 148 SGSFVGPLAEEFLRQFNFDKAFIGADGIDLEGGLTTFNEEEAEVKRAMIEAAREVILLADSSKFGRVAP 216 (253)
T ss_pred CCeEEcHHHHHHHHhCcccEEEEeccccCCCCCcCcCCHHHHHHHHHHHHhhCcEEEEEcCCccCCcee
Confidence 112222333333 7999999999999887776554 344444555566777888899999977543
No 28
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=95.08 E-value=0.21 Score=51.74 Aligned_cols=124 Identities=15% Similarity=0.176 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHhccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHh-CCCceEEE-------
Q 006577 440 ADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVR-KGLSCTYT------- 511 (640)
Q Consensus 440 A~~~Ia~~a~~~I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~-~GI~vTlI------- 511 (640)
..+.|++.|+++|++|++|+- +.++++..+...... .++++|+- .+...+..|.. .++.+.++
T Consensus 77 ~K~~IA~~Aa~~I~~g~tIfl-D~GtT~~~la~~L~~-~~~ltVvT-------Nsl~ia~~l~~~~~~~villGG~~~~~ 147 (252)
T PRK10906 77 EKERIARKVASQIPNGATLFI-DIGTTPEAVAHALLN-HSNLRIVT-------NNLNVANTLMAKEDFRIILAGGELRSR 147 (252)
T ss_pred HHHHHHHHHHhhCCCCCEEEE-cCcHHHHHHHHHhcC-CCCcEEEE-------CcHHHHHHHhhCCCCEEEEECCEEecC
Confidence 346899999999999999986 445555555555532 23455552 22334566654 34443322
Q ss_pred echHHHH----Hhh--hccEEEEcceeEecCCCe-ecccchHHHHHHHhhCCCcEEEecccccccccc
Q 006577 512 HINAISY----IIH--EVTRVFLGASSVLSNGTV-CSRVGTACVAMVAYGFHIPVLVCCEAYKFHERV 572 (640)
Q Consensus 512 ~DsAv~~----iM~--~VdkVlvGADaIlaNG~V-vNKiGT~~lAlaAk~~~VPVyV~aetyKf~~~~ 572 (640)
..+.++. .++ .+|+.|+||+.|-.++++ .+-..-..+--..-....-+|++|+..||....
T Consensus 148 ~~~~~G~~a~~~l~~~~~d~afi~~~Gi~~~~G~t~~~~~ea~~k~~~~~~a~~~illaD~sKf~~~~ 215 (252)
T PRK10906 148 DGGIIGEATLDFISQFRLDFGILGISGIDSDGSLLEFDYHEVRTKRAIIENSRHVMLVVDHSKFGRNA 215 (252)
T ss_pred CCccCCHHHHHHHHhccCCEEEEcCCEECCCCCcCCCCHHHHHHHHHHHHhcCcEEEEEccchhCCcc
Confidence 1122222 222 699999999999876544 445455555555555666789999999997643
No 29
>PRK10681 DNA-binding transcriptional repressor DeoR; Provisional
Probab=93.84 E-value=0.63 Score=48.16 Aligned_cols=122 Identities=14% Similarity=0.094 Sum_probs=74.3
Q ss_pred HHHHHHHHHHhccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhC-CCceEEE--------
Q 006577 441 DRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRK-GLSCTYT-------- 511 (640)
Q Consensus 441 ~~~Ia~~a~~~I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~-GI~vTlI-------- 511 (640)
.+.|++.|+++|.+|++|+.=+ ++++..+.+.... .++++|+-. +...+.+|.+. ++.+.++
T Consensus 79 K~~IA~~Aa~lI~~g~tIflD~-GtT~~~la~~L~~-~~~ltvvTn-------sl~i~~~l~~~~~~~villGG~~~~~~ 149 (252)
T PRK10681 79 KRRAAQLAATLVEPNQTLFFDC-GTTTPWIIEAIDN-ELPFTAVCY-------SLNTFLALQEKPHCRAILCGGEFHASN 149 (252)
T ss_pred HHHHHHHHHhhcCCCCEEEEEC-CccHHHHHHhcCC-CCCeEEEEC-------CHHHHHHHhhCCCCEEEEECcEEecCc
Confidence 4679999999999999999744 4444445544422 124555532 22344566543 3433322
Q ss_pred ---echHHHHHhh--hccEEEEcceeEecCCCe-ecccchHHHHHHHhhCCCcEEEeccccccccc
Q 006577 512 ---HINAISYIIH--EVTRVFLGASSVLSNGTV-CSRVGTACVAMVAYGFHIPVLVCCEAYKFHER 571 (640)
Q Consensus 512 ---~DsAv~~iM~--~VdkVlvGADaIlaNG~V-vNKiGT~~lAlaAk~~~VPVyV~aetyKf~~~ 571 (640)
.....-..+. .+|+.|+||++|-..+++ ..-.--..+.-+.-....-+|++|+..||...
T Consensus 150 ~~~~G~~~~~~l~~~~~D~afig~~gi~~~~G~~~~~~~ea~vk~~~~~~a~~~illaD~sKf~~~ 215 (252)
T PRK10681 150 AIFKPLDFQQTLDNICPDIAFYSAAGVHVSKGATCFNLEELPVKHWAMAMAQKHVLVVDHSKFGKV 215 (252)
T ss_pred ceeeCHHHHHHHHhhCCCEEEEeCceecCCCCcCCCCHHHHHHHHHHHHhhCcEEEEEcccccCce
Confidence 1111112233 699999999999876554 34444445544444556678999999999754
No 30
>PLN02384 ribose-5-phosphate isomerase
Probab=93.68 E-value=0.92 Score=47.93 Aligned_cols=117 Identities=19% Similarity=0.200 Sum_probs=78.2
Q ss_pred HHHHHHHHhccCCCEEEeecCcHHHHHHHHHHHHcCCe--eE-EEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHH
Q 006577 443 VIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQ--FR-VVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYI 519 (640)
Q Consensus 443 ~Ia~~a~~~I~dgdvILT~g~SstV~~vL~~A~e~Gk~--f~-ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~i 519 (640)
..+..|+++|++|.+ +=.|..+||..+|....++.+. ++ +.++-|. .+....+.+.||+++-+.+
T Consensus 38 ~aA~~A~~~V~~gmv-VGLGTGSTv~~~I~~La~r~~~~~l~~I~~VpTS-----~~T~~~a~~~GIpl~~l~~------ 105 (264)
T PLN02384 38 IAAYKAVEFVESGMV-LGLGTGSTAKHAVDRIGELLRQGKLKNIIGIPTS-----KKTHEQAVSLGIPLSDLDS------ 105 (264)
T ss_pred HHHHHHHHhccCCCE-EEecchHHHHHHHHHHHHhhhhccccceEEEcCc-----HHHHHHHHHcCCcEecccc------
Confidence 355667889999876 5678888888887766553322 33 5544332 2234556678999776544
Q ss_pred hhhccEEEEcceeEecCCCeecccchHHHH--HHHhhCCCcEEEecccccccccc
Q 006577 520 IHEVTRVFLGASSVLSNGTVCSRVGTACVA--MVAYGFHIPVLVCCEAYKFHERV 572 (640)
Q Consensus 520 M~~VdkVlvGADaIlaNG~VvNKiGT~~lA--laAk~~~VPVyV~aetyKf~~~~ 572 (640)
..++|..|=|||-|-.|+.++--=|...+- ++|. ...-|+++++..|+.++.
T Consensus 106 v~~iDiaiDGADEId~~lnlIKGGGgallrEKivA~-~A~~~IiI~DesK~V~~L 159 (264)
T PLN02384 106 HPVVDLAIDGADEVDPNLNLVKGRGGSLLREKMIEG-ACKKFVVIVDESKLVKHI 159 (264)
T ss_pred CCcccEEEECCceeCCCCCEEEeCcHHHHHHHHHHH-hcCeEEEEEeCcceeccc
Confidence 457999999999999998877666643321 1222 233678889999997743
No 31
>PRK13978 ribose-5-phosphate isomerase A; Provisional
Probab=92.47 E-value=1.7 Score=45.09 Aligned_cols=127 Identities=14% Similarity=0.131 Sum_probs=81.4
Q ss_pred HHHHHHHHHhccCCCEEEeecCcHHHHHHHHHHHHcCC--eeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHH
Q 006577 442 RVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGK--QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYI 519 (640)
Q Consensus 442 ~~Ia~~a~~~I~dgdvILT~g~SstV~~vL~~A~e~Gk--~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~i 519 (640)
+..++.|+++|++|.+ +=.|..+|+..+|....++.+ .+++.++-|.. +....+.+.||+..-+.+
T Consensus 9 ~~aa~~A~~~V~~gmv-vGLGTGSTv~~~i~~L~~~~~~~~l~i~~VptS~-----~t~~~a~~~Gipl~~l~~------ 76 (228)
T PRK13978 9 LMTLNDVLSQINGDMT-LGIGTGSTMELLLPQMAQLIKERGYNITGVCTSN-----KIAFLAKELGIKICEIND------ 76 (228)
T ss_pred HHHHHHHHHhCCCCCE-EEeCchHHHHHHHHHHHHHhhccCccEEEEeCcH-----HHHHHHHHcCCcEechhh------
Confidence 3456778899999876 667888898888876654322 24555553321 233455678999766544
Q ss_pred hhhccEEEEcceeEecCCCeecccchHHHH--HHHhhCCCcEEEecccccccccccCCCccccc
Q 006577 520 IHEVTRVFLGASSVLSNGTVCSRVGTACVA--MVAYGFHIPVLVCCEAYKFHERVQLDSICSNE 581 (640)
Q Consensus 520 M~~VdkVlvGADaIlaNG~VvNKiGT~~lA--laAk~~~VPVyV~aetyKf~~~~~~ds~i~nE 581 (640)
..++|..|=|||-|-.|+.++--=|-..+= ++|. ...-|++++...|+.++.-....++.|
T Consensus 77 ~~~iDiaiDGADevd~~lnlIKGgGgal~rEKiva~-~A~~~iii~D~sK~v~~Lg~~~plPVE 139 (228)
T PRK13978 77 VDHIDLAIDGADEVDPSLNIIKGGGGALFREKVIDE-MASRFVVVVDETKIVQYLGETFKLPVE 139 (228)
T ss_pred CCceeEEEecCceecCCccEEecCcHHHHHHHHHHH-hcCcEEEEEeCcceecccCCCCCeEEE
Confidence 257999999999999998877555533211 1222 233678888999997753222234455
No 32
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=87.02 E-value=3.4 Score=36.63 Aligned_cols=93 Identities=16% Similarity=0.243 Sum_probs=64.5
Q ss_pred EEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhh-----hccEEEEccee
Q 006577 458 LLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIH-----EVTRVFLGASS 532 (640)
Q Consensus 458 ILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~-----~VdkVlvGADa 532 (640)
|+..|++.....+++...+.+ +.|+++|..|.. ...+.+.|+++.+ -|..=...++ +++.||+..+
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~--~~vvvid~d~~~-----~~~~~~~~~~~i~-gd~~~~~~l~~a~i~~a~~vv~~~~- 71 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGG--IDVVVIDRDPER-----VEELREEGVEVIY-GDATDPEVLERAGIEKADAVVILTD- 71 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTT--SEEEEEESSHHH-----HHHHHHTTSEEEE-S-TTSHHHHHHTTGGCESEEEEESS-
T ss_pred eEEEcCCHHHHHHHHHHHhCC--CEEEEEECCcHH-----HHHHHhccccccc-ccchhhhHHhhcCccccCEEEEccC-
Confidence 577888888888888887743 788888888753 7788889987665 3433333333 6788877765
Q ss_pred EecCCCeecccchHHHHHHHhh-CC-CcEEEeccccc
Q 006577 533 VLSNGTVCSRVGTACVAMVAYG-FH-IPVLVCCEAYK 567 (640)
Q Consensus 533 IlaNG~VvNKiGT~~lAlaAk~-~~-VPVyV~aetyK 567 (640)
+...+..+++.|+. +. +++++.+...+
T Consensus 72 --------~d~~n~~~~~~~r~~~~~~~ii~~~~~~~ 100 (116)
T PF02254_consen 72 --------DDEENLLIALLARELNPDIRIIARVNDPE 100 (116)
T ss_dssp --------SHHHHHHHHHHHHHHTTTSEEEEEESSHH
T ss_pred --------CHHHHHHHHHHHHHHCCCCeEEEEECCHH
Confidence 66788899999997 43 66666655543
No 33
>COG0120 RpiA Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=85.36 E-value=10 Score=39.49 Aligned_cols=119 Identities=15% Similarity=0.139 Sum_probs=82.7
Q ss_pred HHHHHHHHHhccCCCEEEeecCcHHHHHHHHHHHHcCC-eeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHh
Q 006577 442 RVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGK-QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYII 520 (640)
Q Consensus 442 ~~Ia~~a~~~I~dgdvILT~g~SstV~~vL~~A~e~Gk-~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM 520 (640)
+..+..|++++.+|. |+=.|..+|+..+|+.+.+..+ .+.+..+-|. .+....+.+.||+++-+.+ .
T Consensus 8 ~~aa~~A~~~v~~gm-viGlGTGST~~~fI~~Lg~~~~~e~~i~~V~TS-----~~t~~l~~~~GI~v~~l~~------~ 75 (227)
T COG0120 8 KAAAKAALEYVKDGM-VIGLGTGSTAAYFIEALGRRVKGELDIGGVPTS-----FQTEELARELGIPVSSLNE------V 75 (227)
T ss_pred HHHHHHHHHHhcCCC-EEEEcCcHHHHHHHHHHHHhhccCccEEEEeCC-----HHHHHHHHHcCCeecCccc------c
Confidence 445667889999854 5667899999999988863111 1445544333 3455778889998876654 3
Q ss_pred hhccEEEEcceeEecCCCeecccchHHHHH-HHhhCCCcEEEecccccccccc
Q 006577 521 HEVTRVFLGASSVLSNGTVCSRVGTACVAM-VAYGFHIPVLVCCEAYKFHERV 572 (640)
Q Consensus 521 ~~VdkVlvGADaIlaNG~VvNKiGT~~lAl-aAk~~~VPVyV~aetyKf~~~~ 572 (640)
..+|..|=|||-|-.++.++--=|.+.+== +-.+...-|+|+++..|+.+..
T Consensus 76 ~~lDl~iDGADEvd~~~~lIKGGGgAl~rEKIva~~ak~~IvIvDesKlV~~L 128 (227)
T COG0120 76 DSLDLAIDGADEVDPNLNLIKGGGGALLREKIVASAAKRFIVIVDESKLVEVL 128 (227)
T ss_pred CccceEeecccccCCCCCEEccChHHHHHHHHHHHhcCeEEEEEeCccchhhc
Confidence 459999999999999988876666554321 2224466789999999996653
No 34
>PRK05973 replicative DNA helicase; Provisional
Probab=83.63 E-value=11 Score=39.18 Aligned_cols=114 Identities=13% Similarity=0.112 Sum_probs=61.8
Q ss_pred hccCCCEEEeecCcH-----HHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceE-----EEec---h-HH
Q 006577 451 KIRDGDVLLTYGSSS-----AVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCT-----YTHI---N-AI 516 (640)
Q Consensus 451 ~I~dgdvILT~g~Ss-----tV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vT-----lI~D---s-Av 516 (640)
=+..|+.+|..|.++ ..+.++.++.++|.+.-.|-.|-.| ..+..++...|++.. ++.| . ..
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~----~~i~~R~~s~g~d~~~~~~~~~~d~~d~~~~ 135 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTE----QDVRDRLRALGADRAQFADLFEFDTSDAICA 135 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCH----HHHHHHHHHcCCChHHhccceEeecCCCCCH
Confidence 346788999888765 3666777777777654445455444 234455555565421 1111 1 12
Q ss_pred HHHhh------hccEEEEcceeEecCCCeecccch--HHHHHHHhhCCCcEEEecccccc
Q 006577 517 SYIIH------EVTRVFLGASSVLSNGTVCSRVGT--ACVAMVAYGFHIPVLVCCEAYKF 568 (640)
Q Consensus 517 ~~iM~------~VdkVlvGADaIlaNG~VvNKiGT--~~lAlaAk~~~VPVyV~aetyKf 568 (640)
.+++. +++.|||=-=..+....--...+. ..+-..|+.+|+|++++++...-
T Consensus 136 ~~ii~~l~~~~~~~lVVIDsLq~l~~~~~~~el~~~~~~Lk~~Ak~~gitvIl~sQl~r~ 195 (237)
T PRK05973 136 DYIIARLASAPRGTLVVIDYLQLLDQRREKPDLSVQVRALKSFARERGLIIVFISQIDRS 195 (237)
T ss_pred HHHHHHHHHhhCCCEEEEEcHHHHhhcccchhHHHHHHHHHHHHHhCCCeEEEEecCccc
Confidence 23332 356665532122211111112222 33556899999999999888654
No 35
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=81.57 E-value=22 Score=34.70 Aligned_cols=123 Identities=15% Similarity=0.126 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHhc--cCCCEEEeecCcH----HHHHHHHHHHHcCCeeEEEEcCCCCCchH-HHH-HHHHHhCCCce
Q 006577 437 IILADRVIVKHAVTKI--RDGDVLLTYGSSS----AVEMILQHAHELGKQFRVVIVDSRPKHEG-KLL-LRRLVRKGLSC 508 (640)
Q Consensus 437 i~~A~~~Ia~~a~~~I--~dgdvILT~g~Ss----tV~~vL~~A~e~Gk~f~ViV~ESRP~~eG-~~L-a~eL~~~GI~v 508 (640)
++.|-..++++...++ ..+..|+.+|-++ --..+.+++++.|.+..|+++.-...... .+. .+.+.+.|+++
T Consensus 5 ME~Ag~~~a~~i~~~~~~~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~ 84 (169)
T PF03853_consen 5 MENAGRAIAELIRKLFGSPKGPRVLILCGPGNNGGDGLVAARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMGIKI 84 (169)
T ss_dssp HHHHHHHHHHHHHHHSTCCTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT-EE
T ss_pred HHHHHHHHHHHHHHHhcccCCCeEEEEECCCCChHHHHHHHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcCCcE
Confidence 3457778888888888 6778888887553 24455677777888888876754443333 333 37777889877
Q ss_pred EE-EechHHHHHhhhccEEEEcceeEecCCCeecccchHH-HHHHHhhCCCcEEEe
Q 006577 509 TY-THINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTAC-VAMVAYGFHIPVLVC 562 (640)
Q Consensus 509 Tl-I~DsAv~~iM~~VdkVlvGADaIlaNG~VvNKiGT~~-lAlaAk~~~VPVyV~ 562 (640)
.. ..+......+..+|.|| |+|+-.|---.--|.+. +.-.++.++.|++-+
T Consensus 85 ~~~~~~~~~~~~~~~~dlII---Dal~G~G~~~~l~~~~~~~i~~iN~~~~~viAi 137 (169)
T PF03853_consen 85 IELDSDEDLSEALEPADLII---DALFGTGFSGPLRGPIAELIDWINASRAPVIAI 137 (169)
T ss_dssp ESSCCGSGGGHHGSCESEEE---EES-STTGGSCGSTCHHHHHHHHHHHCSEEEEE
T ss_pred eeccccchhhcccccccEEE---EecccCCCCCCcCHHHHHHHHHHhccCCcEEEe
Confidence 65 34555556667888886 77887764333334333 333556667776543
No 36
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=80.94 E-value=8.9 Score=42.85 Aligned_cols=115 Identities=23% Similarity=0.296 Sum_probs=75.7
Q ss_pred HHHHHHHHHH----HhccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHH-HhCCCceEEE---
Q 006577 440 ADRVIVKHAV----TKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRL-VRKGLSCTYT--- 511 (640)
Q Consensus 440 A~~~Ia~~a~----~~I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL-~~~GI~vTlI--- 511 (640)
|+++|+++.. .+|..+|++||-|++..++-+|......|.++ +--||.+- +-..+ .-.||.|.+.
T Consensus 108 AR~AVAeYl~~~l~~kl~a~DV~ltsGC~qAIe~~i~~LA~p~aNI----LlPrPGfp---~Y~~~a~~~~lEVR~ydlL 180 (447)
T KOG0259|consen 108 ARRAVAEYLNRDLPNKLTADDVVLTSGCSQAIELAISSLANPGANI----LLPRPGFP---LYDTRAIYSGLEVRYYDLL 180 (447)
T ss_pred HHHHHHHHhhcCCCCccCcCceEEeccchHHHHHHHHHhcCCCCce----ecCCCCCc---hHHHhhhhcCceeEeeccc
Confidence 4555555532 35667899999999999999888877655542 33577653 22222 2246666653
Q ss_pred -------echHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 512 -------HINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 512 -------~DsAv~~iM~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
-...+-++..+=++.++=-.==-.+|+|+.+-=--.+|-+|+.++++|+.
T Consensus 181 Pe~~weIDL~~veal~DENT~AivviNP~NPcGnVys~~HL~kiae~A~klgi~vIa 237 (447)
T KOG0259|consen 181 PEKDWEIDLDGVEALADENTVAIVVINPNNPCGNVYSEDHLKKIAETAKKLGIMVIA 237 (447)
T ss_pred CcccceechHHHHHhhccCeeEEEEeCCCCCCcccccHHHHHHHHHHHHHhCCeEEe
Confidence 33456666665444443222234679999999999999999999999874
No 37
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=80.78 E-value=4.1 Score=42.69 Aligned_cols=105 Identities=23% Similarity=0.247 Sum_probs=72.2
Q ss_pred eecCcHHH-HHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCC----ceEEEechHHHHHhhhccEEEEcceeEe
Q 006577 460 TYGSSSAV-EMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGL----SCTYTHINAISYIIHEVTRVFLGASSVL 534 (640)
Q Consensus 460 T~g~SstV-~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI----~vTlI~DsAv~~iM~~VdkVlvGADaIl 534 (640)
+.|-|+.+ ..+++.+.++|...+|.+.+-++...- ...+...++ .+-+....++..+|+.||.||--|..+.
T Consensus 2 VTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~---~~~~~~~~~~~~~~~Di~d~~~l~~a~~g~d~V~H~Aa~~~ 78 (280)
T PF01073_consen 2 VTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKF---LKDLQKSGVKEYIQGDITDPESLEEALEGVDVVFHTAAPVP 78 (280)
T ss_pred EEcCCcHHHHHHHHHHHHCCCceEEEEccccccccc---chhhhcccceeEEEeccccHHHHHHHhcCCceEEEeCcccc
Confidence 34555554 456677778886566777765554322 223333343 3444445677888999999999888777
Q ss_pred cCCC-------eecccchHHHHHHHhhCCCcEEEeccccc
Q 006577 535 SNGT-------VCSRVGTACVAMVAYGFHIPVLVCCEAYK 567 (640)
Q Consensus 535 aNG~-------VvNKiGT~~lAlaAk~~~VPVyV~aetyK 567 (640)
..|. -+|--||-.|--+|+.++|+.+|.+.+.-
T Consensus 79 ~~~~~~~~~~~~vNV~GT~nvl~aa~~~~VkrlVytSS~~ 118 (280)
T PF01073_consen 79 PWGDYPPEEYYKVNVDGTRNVLEAARKAGVKRLVYTSSIS 118 (280)
T ss_pred ccCcccHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCcc
Confidence 7762 34679999999999999999998877654
No 38
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.
Probab=80.05 E-value=18 Score=39.11 Aligned_cols=137 Identities=12% Similarity=0.099 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEeecCcHHHHHHHHHHHHcCC-------------eeEEE
Q 006577 418 ESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGK-------------QFRVV 484 (640)
Q Consensus 418 ~~eaK~~L~e~Id~fi~E~i~~A~~~Ia~~a~~~I~dgdvILT~g~SstV~~vL~~A~e~Gk-------------~f~Vi 484 (640)
.+++.+.+.+.++.|... ....+.+.+..++++.....++|-|.+..+..+|..+.+.|. ...|+
T Consensus 26 ~~~v~~a~~~~~~~~~~~--~~~~~~~~~~~a~~~g~~~~~~~~g~t~al~~al~al~~~Gd~~~~~~~~~s~~~~~eVi 103 (363)
T TIGR01437 26 SDEVADAQKRGAQNYFEI--KELVNKTGEYIANLLGVEDAVIVSSASAGIAQSVAAVITRGNRYLVENLHDSKIEVNEVV 103 (363)
T ss_pred CHHHHHHHHHHHhcCCCH--HHHHHHHHHHHHHhhCCCeEEEEcCHHHHHHHHHHHHhcCCCcchhhcccccccccceEE
Confidence 345555555555444322 122334444455555444678887777777777776665554 23677
Q ss_pred EcCCCCCch--HHHHHHHHHhCCCceEEEe------chHHHHHhh-hccEEEEcceeEecCCCeecccchHHHHHHHhhC
Q 006577 485 IVDSRPKHE--GKLLLRRLVRKGLSCTYTH------INAISYIIH-EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGF 555 (640)
Q Consensus 485 V~ESRP~~e--G~~La~eL~~~GI~vTlI~------DsAv~~iM~-~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~ 555 (640)
+ .+|.+. |.....-+...|....++. -..+...+. +...+++-..--...|.+.. + -.++-+|+.|
T Consensus 104 ~--~~~~~~~~~~~~~~~~~~~g~~~v~v~~~~~~d~~~le~ai~~~t~ai~~v~~~~~~~g~~~~-~--~~i~~~a~~~ 178 (363)
T TIGR01437 104 L--PKGHNVDYGAPVETMVRLGGGKVVEAGYANECSAEQLEAAITEKTAAILYIKSHHCVQKSMLS-V--EDAAQVAQEH 178 (363)
T ss_pred E--ECccchhcCCchHHHHHhcCCeEEEEcCCCCCCHHHHHHhcChhceEEEEEecCCCCcCCcCC-H--HHHHHHHHHc
Confidence 6 345442 1112223344565554432 222333333 33222210000012333333 2 4578899999
Q ss_pred CCcEEE
Q 006577 556 HIPVLV 561 (640)
Q Consensus 556 ~VPVyV 561 (640)
|+||+|
T Consensus 179 gi~viv 184 (363)
T TIGR01437 179 NLPLIV 184 (363)
T ss_pred CCeEEE
Confidence 999987
No 39
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=79.21 E-value=60 Score=32.80 Aligned_cols=99 Identities=12% Similarity=0.113 Sum_probs=54.5
Q ss_pred HHHHHHHHHhccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEe-chHHHHH-
Q 006577 442 RVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-INAISYI- 519 (640)
Q Consensus 442 ~~Ia~~a~~~I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~-DsAv~~i- 519 (640)
++.++...+.+.++..|+.+|+.++.....--+.+-.++|. ....|+++.... |......
T Consensus 28 ~~a~~~l~~~l~~~~rI~~~G~GgSa~~A~~~a~~l~~~~~------------------~~r~gl~a~~l~~d~~~~ta~ 89 (196)
T PRK10886 28 SRAAMTLVQSLLNGNKILCCGNGTSAANAQHFAASMINRFE------------------TERPSLPAIALNTDNVVLTAI 89 (196)
T ss_pred HHHHHHHHHHHHcCCEEEEEECcHHHHHHHHHHHHHhcccc------------------ccCCCcceEEecCcHHHHHHH
Confidence 34444555667889999999998763322222221111111 112366666443 3333222
Q ss_pred -----------------hhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEeccc
Q 006577 520 -----------------IHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEA 565 (640)
Q Consensus 520 -----------------M~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~aet 565 (640)
+.+=|.+|+ |...|.--+ ...++-.||.+|+|+++++..
T Consensus 90 and~~~~~~f~~ql~~~~~~gDvli~----iS~SG~s~~---v~~a~~~Ak~~G~~vI~IT~~ 145 (196)
T PRK10886 90 ANDRLHDEVYAKQVRALGHAGDVLLA----ISTRGNSRD---IVKAVEAAVTRDMTIVALTGY 145 (196)
T ss_pred hccccHHHHHHHHHHHcCCCCCEEEE----EeCCCCCHH---HHHHHHHHHHCCCEEEEEeCC
Confidence 345566664 334553222 455667899999999998654
No 40
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=78.62 E-value=32 Score=38.52 Aligned_cols=141 Identities=16% Similarity=0.198 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC---------CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchH
Q 006577 424 TLHSDIERFINEKIILADRVIVKHAVTKIRDG---------DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEG 494 (640)
Q Consensus 424 ~L~e~Id~fi~E~i~~A~~~Ia~~a~~~I~dg---------dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG 494 (640)
.+....+.|.+. +...+......+.+.+.+. -.|..+.-...+.+...=+..+-+. +|.++-..=+..-
T Consensus 183 ~~~~~~~~Y~~~-lm~p~~~~v~~~l~~~~~l~i~~IaP~HG~i~~~~~~~i~~~Y~~W~~~~~~~-~V~l~Y~smyg~T 260 (388)
T COG0426 183 ELLPDMRKYYAN-LMAPNARLVLWALKKIKLLKIEMIAPSHGPIWRGNPKEIVEAYRDWAEGQPKG-KVDLIYDSMYGNT 260 (388)
T ss_pred HHHHHHHHHHHH-hhcccHHHHHHHHhhhcccCccEEEcCCCceeeCCHHHHHHHHHHHHccCCcc-eEEEEEecccCCH
Confidence 555666666654 4455666677777777651 1222222233444444433333234 4555544334444
Q ss_pred HHH----HHHHHhCCCceEEEe--chHHHHHhh---hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEeccc
Q 006577 495 KLL----LRRLVRKGLSCTYTH--INAISYIIH---EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEA 565 (640)
Q Consensus 495 ~~L----a~eL~~~GI~vTlI~--DsAv~~iM~---~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~aet 565 (640)
..| +..|.+.|+.|.++- ++..+.+++ +++.+++|.-++ |++..-++++..--+.+..+.-...++-++
T Consensus 261 ~~ma~aiaegl~~~gv~v~~~~~~~~~~~eI~~~i~~a~~~vvGsPT~--~~~~~p~i~~~l~~v~~~~~~~k~~~vfgS 338 (388)
T COG0426 261 EKMAQAIAEGLMKEGVDVEVINLEDADPSEIVEEILDAKGLVVGSPTI--NGGAHPPIQTALGYVLALAPKNKLAGVFGS 338 (388)
T ss_pred HHHHHHHHHHhhhcCCceEEEEcccCCHHHHHHHHhhcceEEEecCcc--cCCCCchHHHHHHHHHhccCcCceEEEEec
Confidence 444 467888999988766 445788887 689999999888 678999999999999888876555666677
Q ss_pred ccc
Q 006577 566 YKF 568 (640)
Q Consensus 566 yKf 568 (640)
|-.
T Consensus 339 ~GW 341 (388)
T COG0426 339 YGW 341 (388)
T ss_pred cCC
Confidence 744
No 41
>TIGR00474 selA seryl-tRNA(sec) selenium transferase. In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.
Probab=77.36 E-value=76 Score=36.08 Aligned_cols=111 Identities=14% Similarity=0.090 Sum_probs=58.9
Q ss_pred HHHhccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCC-C-CchHHHHHHHHHhCCCceEEEec------hHHHHH
Q 006577 448 AVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSR-P-KHEGKLLLRRLVRKGLSCTYTHI------NAISYI 519 (640)
Q Consensus 448 a~~~I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESR-P-~~eG~~La~eL~~~GI~vTlI~D------sAv~~i 519 (640)
.++++...+.+++-+++..+..+| .+...| -+|+|.+.. + +....++.+.+...|+.+..+.- ..+...
T Consensus 131 lA~l~gae~alvv~sg~aAi~l~l-~~l~~G--deVIvs~~e~v~~ggs~~i~~~~~~~G~~~~~v~~~~~~~l~dle~a 207 (454)
T TIGR00474 131 LCELTGAEDALVVNNNAAAVLLAL-NTLAKG--KEVIVSRGELVEIGGSFRIPDVMEQSGAKLVEVGTTNRTHLKDYEDA 207 (454)
T ss_pred HHHHhCCCcEEEECCHHHHHHHHH-HHhCCc--CEEEECCChhhhhcchhhHHHHHHHcCCEEEEeCCCCCCCHHHHHHh
Confidence 344544345565544444444444 444444 378887643 3 22333555667778998887732 122223
Q ss_pred hh-hccEEEEcceeEec-CCCeecccchHHHHHHHhhCCCcEEEe
Q 006577 520 IH-EVTRVFLGASSVLS-NGTVCSRVGTACVAMVAYGFHIPVLVC 562 (640)
Q Consensus 520 M~-~VdkVlvGADaIla-NG~VvNKiGT~~lAlaAk~~~VPVyV~ 562 (640)
+. +...|++-....+. +|. ...+-...++-+||.||++++|=
T Consensus 208 I~~~T~lv~~~h~sN~~~~G~-~~~~dl~~I~~la~~~g~~vivD 251 (454)
T TIGR00474 208 ITENTALLLKVHTSNYRIVGF-TEEVSIAELVALGREHGLPVMED 251 (454)
T ss_pred cCcCCEEEEEEccCcccccCC-CCCCCHHHHHHHHHHcCCeEEEE
Confidence 33 33333333222221 231 12344667888999999999984
No 42
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=74.17 E-value=46 Score=34.38 Aligned_cols=43 Identities=12% Similarity=0.036 Sum_probs=35.1
Q ss_pred CCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEcc
Q 006577 488 SRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA 530 (640)
Q Consensus 488 SRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGA 530 (640)
++-..+-..+++.+.+.|+++..|+|+..+.+-+.+|.+|...
T Consensus 185 sg~~~~~~~~~~~ak~~ga~iI~IT~~~~s~la~~ad~~l~~~ 227 (278)
T PRK11557 185 SGERRELNLAADEALRVGAKVLAITGFTPNALQQRASHCLYTI 227 (278)
T ss_pred CCCCHHHHHHHHHHHHcCCCEEEEcCCCCCchHHhCCEEEEeC
Confidence 3334455667799999999999999999999999999999753
No 43
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=74.06 E-value=55 Score=27.92 Aligned_cols=89 Identities=20% Similarity=0.261 Sum_probs=47.2
Q ss_pred HHHHHHHcCCeeEEEEcCCCCCc-----------hHHHHHHHHH----hCCCceEEE--echHHHHHhh-----hccEEE
Q 006577 470 ILQHAHELGKQFRVVIVDSRPKH-----------EGKLLLRRLV----RKGLSCTYT--HINAISYIIH-----EVTRVF 527 (640)
Q Consensus 470 vL~~A~e~Gk~f~ViV~ESRP~~-----------eG~~La~eL~----~~GI~vTlI--~DsAv~~iM~-----~VdkVl 527 (640)
.+..|...+..++++.+...+.. +..+....+. ..|+++++. .......++. ++|+|+
T Consensus 19 a~~~a~~~~~~i~~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~dlvv 98 (130)
T cd00293 19 AARLARRLGAELVLLHVVDPPPSSAAELAELLEEEARALLEALREALAEAGVKVETVVLEGDPAEAILEAAEELGADLIV 98 (130)
T ss_pred HHHHHHhcCCEEEEEEEecCCCCcchhHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHcCCCEEE
Confidence 33444445667776655443322 3444443333 358877654 3332333433 579999
Q ss_pred EcceeEecCCCee-cccchHHHHHHHhhCCCcEEEe
Q 006577 528 LGASSVLSNGTVC-SRVGTACVAMVAYGFHIPVLVC 562 (640)
Q Consensus 528 vGADaIlaNG~Vv-NKiGT~~lAlaAk~~~VPVyV~ 562 (640)
+|+..- +.+. ...|+..- -+.+..++||+++
T Consensus 99 ig~~~~---~~~~~~~~~~~~~-~ll~~~~~pvliv 130 (130)
T cd00293 99 MGSRGR---SGLRRLLLGSVAE-RVLRHAPCPVLVV 130 (130)
T ss_pred EcCCCC---CccceeeeccHHH-HHHhCCCCCEEeC
Confidence 998643 2222 23344333 3446688999874
No 44
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=73.98 E-value=71 Score=31.88 Aligned_cols=38 Identities=11% Similarity=0.008 Sum_probs=25.7
Q ss_pred hhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEeccc
Q 006577 521 HEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEA 565 (640)
Q Consensus 521 ~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~aet 565 (640)
.+=|.+|+ |...| +.--+..++-.||.+|+|++.++..
T Consensus 110 ~~~Dv~I~----iS~SG---~t~~~i~~~~~ak~~g~~iI~iT~~ 147 (192)
T PRK00414 110 REGDVLLG----ISTSG---NSGNIIKAIEAARAKGMKVITLTGK 147 (192)
T ss_pred CCCCEEEE----EeCCC---CCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 34566654 44455 3344556777999999999998765
No 45
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=73.87 E-value=38 Score=30.82 Aligned_cols=60 Identities=22% Similarity=0.268 Sum_probs=36.8
Q ss_pred HHhCCCceEEEe---chHHHHHhh-----hccEEEEcceeEecCCCeecc-cchHHHHHHHhhCC--CcEEEec
Q 006577 501 LVRKGLSCTYTH---INAISYIIH-----EVTRVFLGASSVLSNGTVCSR-VGTACVAMVAYGFH--IPVLVCC 563 (640)
Q Consensus 501 L~~~GI~vTlI~---DsAv~~iM~-----~VdkVlvGADaIlaNG~VvNK-iGT~~lAlaAk~~~--VPVyV~a 563 (640)
+...|+++..+. ++....+++ ++|++++|++.- |.+... .|+.....+.++.. +||+|+.
T Consensus 74 ~~~~~~~~~~~~~~g~~~~~~I~~~a~~~~~dlIV~Gs~g~---~~l~~~~~gssva~~Vi~~a~~~c~Vlvv~ 144 (146)
T cd01989 74 CSRKGVQCEDVVLEDDDVAKAIVEYVADHGITKLVMGASSD---NHFSMKFKKSDVASSVLKEAPDFCTVYVVS 144 (146)
T ss_pred HhhcCCeEEEEEEeCCcHHHHHHHHHHHcCCCEEEEeccCC---CceeecccCCchhHHHHhcCCCCceEEEEe
Confidence 334677665433 243444444 689999999864 333222 35444445677888 9999985
No 46
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=72.87 E-value=31 Score=39.02 Aligned_cols=51 Identities=6% Similarity=0.023 Sum_probs=38.9
Q ss_pred hccEEEEcce-eEecCCCeecccchHHHHHHHhhCCCcEEEeccccccccccc
Q 006577 522 EVTRVFLGAS-SVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQ 573 (640)
Q Consensus 522 ~VdkVlvGAD-aIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~aetyKf~~~~~ 573 (640)
.+|..|.||+ +|..+|++++-.|..+.-+++ ..-.=+++++...|+.+.+.
T Consensus 181 ~advgit~an~aiAetGtlv~~~~~gn~R~~~-~lP~~hI~vvg~~kivp~~~ 232 (432)
T TIGR00273 181 SADIGISGCNFAIAETGSIFLVENEGNGRLST-TLPKTHIAVMGIEKIVPTFD 232 (432)
T ss_pred cCCEEEeccchHhhcCceEEEecCCCCchhhc-cCCCeEEEEEEHHHccCCHH
Confidence 6999999999 999999999999888755554 33333456678888877643
No 47
>PRK02947 hypothetical protein; Provisional
Probab=72.41 E-value=1.1e+02 Score=31.67 Aligned_cols=39 Identities=8% Similarity=-0.091 Sum_probs=30.5
Q ss_pred chHHHHHHHHHhCCCceEEEechHH-----------HHHhhhccEEEEcc
Q 006577 492 HEGKLLLRRLVRKGLSCTYTHINAI-----------SYIIHEVTRVFLGA 530 (640)
Q Consensus 492 ~eG~~La~eL~~~GI~vTlI~DsAv-----------~~iM~~VdkVlvGA 530 (640)
.+=.++++.+.+.|+++..|+++.- ..+.+.+|.||.-.
T Consensus 120 ~~~i~~~~~a~~~g~~vI~iT~~~~s~~~~~~h~~gs~l~~~ad~~l~~~ 169 (246)
T PRK02947 120 PVPIEMALEAKERGAKVIAVTSLAYSASVASRHSSGKRLAEVADVVLDNG 169 (246)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCcccccccccCCCcCchhHhCCEEEEcC
Confidence 3445667999999999999999863 57777899888543
No 48
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=71.85 E-value=45 Score=29.85 Aligned_cols=94 Identities=16% Similarity=0.244 Sum_probs=59.8
Q ss_pred CEEEeecCcH--HHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEec-----hHHHHHhh--hccEE
Q 006577 456 DVLLTYGSSS--AVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI-----NAISYIIH--EVTRV 526 (640)
Q Consensus 456 dvILT~g~Ss--tV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D-----sAv~~iM~--~VdkV 526 (640)
.++++.+.+. -+..+++..++ ..|++|.+++ .++.|.+.||+|+.+.. ..+..+++ ++|.|
T Consensus 2 ~vl~s~~~~~k~~~~~~~~~l~~--~G~~l~aT~g--------T~~~l~~~gi~~~~v~~~~~~~~~i~~~i~~~~id~v 71 (110)
T cd01424 2 TVFISVADRDKPEAVEIAKRLAE--LGFKLVATEG--------TAKYLQEAGIPVEVVNKVSEGRPNIVDLIKNGEIQLV 71 (110)
T ss_pred eEEEEEEcCcHhHHHHHHHHHHH--CCCEEEEchH--------HHHHHHHcCCeEEEEeecCCCchhHHHHHHcCCeEEE
Confidence 4566666443 23445555554 4688887642 56788899999887643 33444444 79999
Q ss_pred EEcceeEecCCCeecccchHHHHHHHhhCCCcEEEeccc
Q 006577 527 FLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEA 565 (640)
Q Consensus 527 lvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~aet 565 (640)
|--.+ +.- ...-.|.+=-+|-.|+||++-..++
T Consensus 72 In~~~-----~~~-~~~~~~~iRR~Av~~~ipl~T~~~t 104 (110)
T cd01424 72 INTPS-----GKR-AIRDGFSIRRAALEYKVPYFTTLDT 104 (110)
T ss_pred EECCC-----CCc-cCccHHHHHHHHHHhCCCEEecHHH
Confidence 87642 221 1234578888999999999965443
No 49
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=71.28 E-value=20 Score=40.12 Aligned_cols=72 Identities=18% Similarity=0.138 Sum_probs=48.7
Q ss_pred CCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEcc
Q 006577 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA 530 (640)
Q Consensus 454 dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGA 530 (640)
.+..|+.+|...+=+.+.+.+.+.| ++|++.|.++......+.+.|.+.||.+.+-.+.. ....+|.||++.
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G--~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~---~~~~~D~Vv~s~ 86 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELG--ARVTVVDDGDDERHRALAAILEALGATVRLGPGPT---LPEDTDLVVTSP 86 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCcc---ccCCCCEEEECC
Confidence 4668888888766555555555555 57888898876555566788999998775433222 334688888775
No 50
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=70.88 E-value=30 Score=38.17 Aligned_cols=75 Identities=17% Similarity=0.233 Sum_probs=46.3
Q ss_pred CCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEccee
Q 006577 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASS 532 (640)
Q Consensus 454 dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGADa 532 (640)
.+.+|+..|.+..-+.+.+.+.+.|. .|++.|..+...=.....+|.+.|+.+ +........+..+|.||+++..
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~--~V~~~d~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~d~vv~~~g~ 78 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGA--KVILTDEKEEDQLKEALEELGELGIEL--VLGEYPEEFLEGVDLVVVSPGV 78 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHhcCCEE--EeCCcchhHhhcCCEEEECCCC
Confidence 36788888988765556666666664 566666654322233346777778763 3222223456679999887753
No 51
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=68.89 E-value=57 Score=31.60 Aligned_cols=36 Identities=11% Similarity=-0.062 Sum_probs=30.2
Q ss_pred HHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEc
Q 006577 494 GKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLG 529 (640)
Q Consensus 494 G~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvG 529 (640)
=..+++.+.+.|+++..|+++.-+.+-+.+|.+|.-
T Consensus 91 ~i~~~~~ak~~g~~iI~IT~~~~s~la~~ad~~l~~ 126 (179)
T cd05005 91 VVNAAEKAKKAGAKVVLITSNPDSPLAKLADVVVVI 126 (179)
T ss_pred HHHHHHHHHHCCCeEEEEECCCCCchHHhCCEEEEe
Confidence 345668889999999999999998888889987753
No 52
>PLN02651 cysteine desulfurase
Probab=68.25 E-value=82 Score=33.67 Aligned_cols=102 Identities=13% Similarity=0.190 Sum_probs=51.0
Q ss_pred CCCEEEeecCcHHHHHHHHHHHH--cCCeeEEEEcCCCCCchHHHH-HHHHHhCCCceEEEech--------HHHHHhh-
Q 006577 454 DGDVLLTYGSSSAVEMILQHAHE--LGKQFRVVIVDSRPKHEGKLL-LRRLVRKGLSCTYTHIN--------AISYIIH- 521 (640)
Q Consensus 454 dgdvILT~g~SstV~~vL~~A~e--~Gk~f~ViV~ESRP~~eG~~L-a~eL~~~GI~vTlI~Ds--------Av~~iM~- 521 (640)
.+.+++|-|.|..+..+|..+.. .++.-+|++.+..- .+... ...|...|+++.++.-. .+-..+.
T Consensus 60 ~~~v~~t~~~t~a~~~~l~~~~~~~~~~g~~vl~~~~~h--~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~ 137 (364)
T PLN02651 60 PKEIIFTSGATESNNLAIKGVMHFYKDKKKHVITTQTEH--KCVLDSCRHLQQEGFEVTYLPVKSDGLVDLDELAAAIRP 137 (364)
T ss_pred CCeEEEeCCHHHHHHHHHHHHHHhccCCCCEEEEccccc--HHHHHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhcCC
Confidence 34677776666654444444322 12234666654322 22111 23455678888877421 2333333
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 522 ~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
+...|++. ..-...|.+.. -..|+-+||.+|++++|
T Consensus 138 ~t~lv~v~-~~~n~tG~~~~---l~~I~~~~~~~g~~~~v 173 (364)
T PLN02651 138 DTALVSVM-AVNNEIGVIQP---VEEIGELCREKKVLFHT 173 (364)
T ss_pred CcEEEEEE-CCCCCceeccc---HHHHHHHHHHcCCEEEE
Confidence 33334332 22223343322 23578889999998876
No 53
>PRK04311 selenocysteine synthase; Provisional
Probab=67.73 E-value=81 Score=35.95 Aligned_cols=113 Identities=17% Similarity=0.137 Sum_probs=58.5
Q ss_pred HHHHhccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCC--chHHHHHHHHHhCCCceEEEec------hHHHH
Q 006577 447 HAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPK--HEGKLLLRRLVRKGLSCTYTHI------NAISY 518 (640)
Q Consensus 447 ~a~~~I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~--~eG~~La~eL~~~GI~vTlI~D------sAv~~ 518 (640)
..++++...+.++|-+++..+..+| .+...| -+|+|.+..-+ ....++.+.+...|+.+.++.- ..+..
T Consensus 135 ~lA~l~Gae~a~vv~sgtaAl~l~l-~~l~~G--deVIvs~~e~~~~ggs~~i~~~~~~~G~~l~~v~~~~~t~~~dle~ 211 (464)
T PRK04311 135 LLCALTGAEDALVVNNNAAAVLLAL-NALAAG--KEVIVSRGELVEIGGAFRIPDVMRQAGARLVEVGTTNRTHLRDYEQ 211 (464)
T ss_pred HHHHHhCCCeEEEECCHHHHHHHHH-HHhCCC--CEEEEcchhhhhcCcchhhHHHHHHCCcEEEEECCCCCCCHHHHHH
Confidence 3344444345666655555555455 444434 46887654222 1223444566778988776642 12233
Q ss_pred HhhhccEEEEccee-Ee-cCCCeecccchHHHHHHHhhCCCcEEEec
Q 006577 519 IIHEVTRVFLGASS-VL-SNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (640)
Q Consensus 519 iM~~VdkVlvGADa-Il-aNG~VvNKiGT~~lAlaAk~~~VPVyV~a 563 (640)
.+..=++.++-.+. -+ -.| ....+---.++-+||.||+|++|=+
T Consensus 212 aI~~~TklV~~vh~sN~~i~G-~~~~~dl~eI~~lak~~gi~vivD~ 257 (464)
T PRK04311 212 AINENTALLLKVHTSNYRIEG-FTKEVSLAELAALGKEHGLPVVYDL 257 (464)
T ss_pred hcCccCeEEEEEcCCCccccc-cCCcCCHHHHHHHHHHcCCeEEEEC
Confidence 34332333332222 11 122 1122345668889999999999854
No 54
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=67.14 E-value=65 Score=31.05 Aligned_cols=38 Identities=11% Similarity=-0.081 Sum_probs=32.1
Q ss_pred hHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEcc
Q 006577 493 EGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA 530 (640)
Q Consensus 493 eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGA 530 (640)
+=.++++.+.+.|+++..|+++.-+.+-+.+|.+|.-.
T Consensus 87 ~~i~~~~~ak~~g~~ii~IT~~~~s~la~~ad~~l~~~ 124 (179)
T TIGR03127 87 SLVTVAKKAKEIGATVAAITTNPESTLGKLADVVVEIP 124 (179)
T ss_pred HHHHHHHHHHHCCCeEEEEECCCCCchHHhCCEEEEeC
Confidence 33566688899999999999999999999999988644
No 55
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=66.41 E-value=90 Score=32.55 Aligned_cols=49 Identities=12% Similarity=-0.010 Sum_probs=38.1
Q ss_pred EEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEcc
Q 006577 482 RVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA 530 (640)
Q Consensus 482 ~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGA 530 (640)
-+++.-++-..+-..+++.+.+.|+++..|+++.-+.+-+.+|.+|.-.
T Consensus 191 ~I~iS~sG~t~~~~~~~~~ak~~g~~ii~IT~~~~s~la~~ad~~l~~~ 239 (292)
T PRK11337 191 VLVVSHSGRTSDVIEAVELAKKNGAKIICITNSYHSPIAKLADYVICST 239 (292)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEEcC
Confidence 3444445545556667788899999999999999999999999999743
No 56
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=65.94 E-value=62 Score=35.55 Aligned_cols=62 Identities=24% Similarity=0.314 Sum_probs=37.4
Q ss_pred HHhccCCCEEEeecCcHHHHHHHHHHHHc-CCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEe
Q 006577 449 VTKIRDGDVLLTYGSSSAVEMILQHAHEL-GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH 512 (640)
Q Consensus 449 ~~~I~dgdvILT~g~SstV~~vL~~A~e~-Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~ 512 (640)
...|+.||+|+..|....+..+.+...+. ...-+++|+-. ..-|+.+++.|.+.|+++++|.
T Consensus 199 ~~~l~~gD~l~v~g~~~~l~~~~~~~~~~~~~~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid 261 (453)
T PRK09496 199 DTVIEAGDEVYFIGAREHIRAVMSEFGRLEKPVKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIE 261 (453)
T ss_pred CcEecCCCEEEEEeCHHHHHHHHHHhCccCCCCCEEEEECC--CHHHHHHHHHHHhCCCeEEEEE
Confidence 34556677777777777665555433221 12345666655 4456777777777777777664
No 57
>PRK09932 glycerate kinase II; Provisional
Probab=65.68 E-value=7.8 Score=43.12 Aligned_cols=62 Identities=19% Similarity=0.205 Sum_probs=44.6
Q ss_pred hHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEecccccc
Q 006577 493 EGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKF 568 (640)
Q Consensus 493 eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~aetyKf 568 (640)
.|..+.-++.. .-..|+.+|+||.|=-++-. ....--..+.+|-.|+.|+|||+++|.+...
T Consensus 267 ~G~d~v~~~~~------------l~~~l~~ADlVITGEG~~D~--Qt~~GK~p~~Va~~A~~~~~Pvi~i~G~~~~ 328 (381)
T PRK09932 267 PGIEIVLNAVN------------LEQAVQGAALVITGEGRIDS--QTAGGKAPLGVASVAKQFNVPVIGIAGVLGD 328 (381)
T ss_pred cHHHHHHHhcC------------hHHHhccCCEEEECCCcccc--cccCCccHHHHHHHHHHcCCCEEEEecccCC
Confidence 67777655542 23567789999999766632 2333344677888999999999999998643
No 58
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=64.97 E-value=51 Score=33.31 Aligned_cols=94 Identities=20% Similarity=0.176 Sum_probs=61.5
Q ss_pred CCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEcceeE
Q 006577 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSV 533 (640)
Q Consensus 454 dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGADaI 533 (640)
.|..||..|-..+...-++...+.|-.++|+-.+ +. .-..+|.+.| .++++.-.--...+..++.||+..
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~--~~----~~l~~l~~~~-~i~~~~~~~~~~dl~~~~lVi~at--- 77 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEE--LE----SELTLLAEQG-GITWLARCFDADILEGAFLVIAAT--- 77 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC--CC----HHHHHHHHcC-CEEEEeCCCCHHHhCCcEEEEECC---
Confidence 4678999999998888888888878765555433 32 1234566666 677766432233455666665443
Q ss_pred ecCCCe-ecccchHHHHHHHhhCCCcEEEecc
Q 006577 534 LSNGTV-CSRVGTACVAMVAYGFHIPVLVCCE 564 (640)
Q Consensus 534 laNG~V-vNKiGT~~lAlaAk~~~VPVyV~ae 564 (640)
|+- +| ..++..|+..++||.++-+
T Consensus 78 ---~d~~ln----~~i~~~a~~~~ilvn~~d~ 102 (205)
T TIGR01470 78 ---DDEELN----RRVAHAARARGVPVNVVDD 102 (205)
T ss_pred ---CCHHHH----HHHHHHHHHcCCEEEECCC
Confidence 222 33 3688889999999998743
No 59
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=64.65 E-value=31 Score=30.44 Aligned_cols=59 Identities=19% Similarity=0.112 Sum_probs=41.5
Q ss_pred HHHHHHhCCCceEEE------echH--HHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEe
Q 006577 497 LLRRLVRKGLSCTYT------HINA--ISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (640)
Q Consensus 497 La~eL~~~GI~vTlI------~DsA--v~~iM~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~ 562 (640)
+...|.+.|...... .... +...++++|+||+=.|.|- ---+..+--.||.+++||+.+
T Consensus 15 ~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vs-------H~~~~~vk~~akk~~ip~~~~ 81 (97)
T PF10087_consen 15 YKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVS-------HNAMWKVKKAAKKYGIPIIYS 81 (97)
T ss_pred HHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcC-------hHHHHHHHHHHHHcCCcEEEE
Confidence 445666677777776 4444 5556667899988776653 344566667899999999986
No 60
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=63.71 E-value=83 Score=28.49 Aligned_cols=86 Identities=13% Similarity=0.095 Sum_probs=55.8
Q ss_pred HHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEec------h-HHHHHhh--hccEEEEcceeEecCC
Q 006577 467 VEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI------N-AISYIIH--EVTRVFLGASSVLSNG 537 (640)
Q Consensus 467 V~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D------s-Av~~iM~--~VdkVlvGADaIlaNG 537 (640)
.+.+.+...+ ..|++|.+++ .++.|.+.||+|+.+.. . ....+.. ++|+||-=. +|
T Consensus 14 ~~~~a~~l~~--~G~~i~AT~g--------Ta~~L~~~Gi~~~~v~~~~~~g~~~i~~~i~~~g~idlVIn~~-----~~ 78 (112)
T cd00532 14 LVDLAPKLSS--DGFPLFATGG--------TSRVLADAGIPVRAVSKRHEDGEPTVDAAIAEKGKFDVVINLR-----DP 78 (112)
T ss_pred HHHHHHHHHH--CCCEEEECcH--------HHHHHHHcCCceEEEEecCCCCCcHHHHHHhCCCCEEEEEEcC-----CC
Confidence 3344444443 4588988742 56788889999988632 2 3444444 688887543 33
Q ss_pred Ce--ecccchHHHHHHHhhCCCcEEEeccccc
Q 006577 538 TV--CSRVGTACVAMVAYGFHIPVLVCCEAYK 567 (640)
Q Consensus 538 ~V--vNKiGT~~lAlaAk~~~VPVyV~aetyK 567 (640)
.- -.....+.+=-+|-.|+||++....+..
T Consensus 79 ~~~~~~~~dg~~iRR~A~~~~Ip~~T~~~ta~ 110 (112)
T cd00532 79 RRDRCTDEDGTALLRLARLYKIPVTTPNATAM 110 (112)
T ss_pred CcccccCCChHHHHHHHHHcCCCEEECHHHHh
Confidence 32 1255677888899999999997655543
No 61
>PRK07582 cystathionine gamma-lyase; Validated
Probab=63.37 E-value=69 Score=34.83 Aligned_cols=99 Identities=16% Similarity=0.105 Sum_probs=55.3
Q ss_pred CCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHH-HHHH-HHHhCCCceEEEechHHH-HHhhhccEEEEcc
Q 006577 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLLR-RLVRKGLSCTYTHINAIS-YIIHEVTRVFLGA 530 (640)
Q Consensus 454 dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~-~La~-eL~~~GI~vTlI~DsAv~-~iM~~VdkVlvGA 530 (640)
..+.|++-+-+..+..+|......| -+|++.+ |.+.+. .+++ .|...|+++.++...... .+++++..|++-
T Consensus 65 ~~~~v~~~sG~~Ai~~~l~all~~G--d~Vl~~~--~~y~~~~~~~~~~l~~~G~~v~~v~~~~~~~~~~~~t~lV~le- 139 (366)
T PRK07582 65 GAEALVFPSGMAAITAVLRALLRPG--DTVVVPA--DGYYQVRALAREYLAPLGVTVREAPTAGMAEAALAGADLVLAE- 139 (366)
T ss_pred CCCEEEECCHHHHHHHHHHHhcCCC--CEEEEeC--CCcHhHHHHHHHHHhcCeEEEEEECCCChHHHhccCceEEEEE-
Confidence 3466666555555555554444333 4666653 555443 4443 466789999988744222 445566666653
Q ss_pred eeEe-cCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 531 SSVL-SNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 531 DaIl-aNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
... ..|.+ .--..|+-+|+.+++.++|
T Consensus 140 -~p~NPtg~v---~di~~I~~~a~~~g~~lvV 167 (366)
T PRK07582 140 -TPSNPGLDV---CDLAALAAAAHAAGALLVV 167 (366)
T ss_pred -CCCCCCCCc---cCHHHHHHHHHHcCCEEEE
Confidence 211 11222 1235677788899987766
No 62
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=62.99 E-value=1.2e+02 Score=31.94 Aligned_cols=102 Identities=18% Similarity=0.203 Sum_probs=50.2
Q ss_pred CCEEEeecCcHHHHHHHHHHHHcC--Ce-eEEEEcCC-CCCchHHHHHHHHHhCCCceEEEech--------HHHHHhhh
Q 006577 455 GDVLLTYGSSSAVEMILQHAHELG--KQ-FRVVIVDS-RPKHEGKLLLRRLVRKGLSCTYTHIN--------AISYIIHE 522 (640)
Q Consensus 455 gdvILT~g~SstV~~vL~~A~e~G--k~-f~ViV~ES-RP~~eG~~La~eL~~~GI~vTlI~Ds--------Av~~iM~~ 522 (640)
.++++|-|.+..+..+|......+ +. -+|++.+. .|.+.. ....+...|+++.++... .+-..+..
T Consensus 60 ~~v~~~~g~t~a~~~~l~~l~~~~~~~g~~~vi~~~~~~~s~~~--~~~~~~~~G~~v~~v~~~~~~~~d~~~l~~~l~~ 137 (353)
T TIGR03235 60 EEVIFTSGATESNNLAILGLARAGEQKGKKHIITSAIEHPAVLE--PIRALERNGFTVTYLPVDESGRIDVDELADAIRP 137 (353)
T ss_pred CeEEEeCCHHHHHHHHHHHHHHhcccCCCCeeeEcccccHHHHH--HHHHHHhcCCEEEEEccCCCCcCCHHHHHHhCCC
Confidence 457777665555555555443211 11 35555432 232211 123455679988887621 12222222
Q ss_pred ccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 523 VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 523 VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
-.++++-...-...|.+.. --.|+-+|+.++++|+|
T Consensus 138 ~~~lv~~~~~~n~tG~~~~---~~~I~~l~~~~~~~~iv 173 (353)
T TIGR03235 138 DTLLVSIMHVNNETGSIQP---IREIAEVLEAHEAFFHV 173 (353)
T ss_pred CCEEEEEEcccCCceeccC---HHHHHHHHHHcCCEEEE
Confidence 1233322222223444432 25577889999998887
No 63
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=62.86 E-value=97 Score=32.88 Aligned_cols=70 Identities=17% Similarity=0.217 Sum_probs=43.7
Q ss_pred CCeeEEEEcCCCCCchHHHHHHHHHhC-CCceEEEechHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCC
Q 006577 478 GKQFRVVIVDSRPKHEGKLLLRRLVRK-GLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFH 556 (640)
Q Consensus 478 Gk~f~ViV~ESRP~~eG~~La~eL~~~-GI~vTlI~DsAv~~iM~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~ 556 (640)
..+++++++-..+.. -..+.+.+.+. |+.+.++. ..+..+|..+|.+|+.+ |+..+ =|-.+|
T Consensus 218 ~~~~~~ii~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~aDl~v~~s-------------G~~~l--Ea~a~G 280 (380)
T PRK00025 218 YPDLRFVLPLVNPKR-REQIEEALAEYAGLEVTLLD-GQKREAMAAADAALAAS-------------GTVTL--ELALLK 280 (380)
T ss_pred CCCeEEEEecCChhh-HHHHHHHHhhcCCCCeEEEc-ccHHHHHHhCCEEEECc-------------cHHHH--HHHHhC
Confidence 345666665322321 22333445556 78876654 56788899999998842 55444 456689
Q ss_pred CcEEEecc
Q 006577 557 IPVLVCCE 564 (640)
Q Consensus 557 VPVyV~ae 564 (640)
+|++++-.
T Consensus 281 ~PvI~~~~ 288 (380)
T PRK00025 281 VPMVVGYK 288 (380)
T ss_pred CCEEEEEc
Confidence 99998743
No 64
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=62.55 E-value=12 Score=32.91 Aligned_cols=79 Identities=15% Similarity=0.183 Sum_probs=49.4
Q ss_pred HHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCce----EEEech---H----HHHHhh--hccEEEEcceeEe
Q 006577 468 EMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSC----TYTHIN---A----ISYIIH--EVTRVFLGASSVL 534 (640)
Q Consensus 468 ~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~v----TlI~Ds---A----v~~iM~--~VdkVlvGADaIl 534 (640)
+.+.+...+.| |++|.+++ .++.|.++||+| .++... . +..+|+ ++|+||.=-+
T Consensus 3 ~~~a~~l~~lG--~~i~AT~g--------Ta~~L~~~Gi~~~~v~~~~~~~~~~~g~~~i~~~i~~~~IdlVIn~~~--- 69 (95)
T PF02142_consen 3 VPLAKRLAELG--FEIYATEG--------TAKFLKEHGIEVTEVVNKIGEGESPDGRVQIMDLIKNGKIDLVINTPY--- 69 (95)
T ss_dssp HHHHHHHHHTT--SEEEEEHH--------HHHHHHHTT--EEECCEEHSTG-GGTHCHHHHHHHHTTSEEEEEEE-----
T ss_pred HHHHHHHHHCC--CEEEEChH--------HHHHHHHcCCCceeeeeecccCccCCchhHHHHHHHcCCeEEEEEeCC---
Confidence 34555666666 89998842 568999999993 344444 1 555665 6998875332
Q ss_pred cCCCeecccchHHHHHHHhhCCCcEE
Q 006577 535 SNGTVCSRVGTACVAMVAYGFHIPVL 560 (640)
Q Consensus 535 aNG~VvNKiGT~~lAlaAk~~~VPVy 560 (640)
.+.-......+.+--+|-.++||++
T Consensus 70 -~~~~~~~~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 70 -PFSDQEHTDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp -THHHHHTHHHHHHHHHHHHTTSHEE
T ss_pred -CCcccccCCcHHHHHHHHHcCCCCc
Confidence 2211122377888999999999975
No 65
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=62.45 E-value=80 Score=35.48 Aligned_cols=96 Identities=21% Similarity=0.246 Sum_probs=47.2
Q ss_pred EEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHH-HHH-HHHHhCCCceEEEec---hHHHHHhh-hccEEEEcc
Q 006577 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLL-RRLVRKGLSCTYTHI---NAISYIIH-EVTRVFLGA 530 (640)
Q Consensus 457 vILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~-~La-~eL~~~GI~vTlI~D---sAv~~iM~-~VdkVlvGA 530 (640)
.|+|-+-+..+..+|......|. +|++... .+.|. .+. +.|...|+.++++.. ..+-..+. +...|++-
T Consensus 82 av~~sSGt~Al~~al~~ll~~Gd--~Vi~~~~--~y~~t~~~~~~~l~~~Gi~v~~vd~~d~~~l~~~i~~~TklV~~e- 156 (433)
T PRK08134 82 AIATASGQAALHLAIATLMGAGS--HIVASSA--LYGGSHNLLHYTLRRFGIETTFVKPGDIDGWRAAIRPNTRLLFGE- 156 (433)
T ss_pred EEEeCCHHHHHHHHHHHHhCCCC--EEEEeCC--ccHHHHHHHHHHHhhCCeEEEEECCCCHHHHHHhcCCCCeEEEEE-
Confidence 45544434444444444443343 5555432 23232 332 556677888877742 23334443 33334332
Q ss_pred eeEec-CCCeecccchHHHHHHHhhCCCcEEE
Q 006577 531 SSVLS-NGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 531 DaIla-NG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
.+.. .|.+.. --.|+-+|+.+|++|+|
T Consensus 157 -~~~np~g~v~D---i~~I~~la~~~gi~liv 184 (433)
T PRK08134 157 -TLGNPGLEVLD---IPTVAAIAHEAGVPLLV 184 (433)
T ss_pred -CCCcccCcccC---HHHHHHHHHHcCCEEEE
Confidence 2211 111221 34578899999999887
No 66
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=62.09 E-value=1.1e+02 Score=32.06 Aligned_cols=98 Identities=19% Similarity=0.177 Sum_probs=49.6
Q ss_pred CEEEeecC-cHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEec--------hHHHHHhh--hcc
Q 006577 456 DVLLTYGS-SSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--------NAISYIIH--EVT 524 (640)
Q Consensus 456 dvILT~g~-SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D--------sAv~~iM~--~Vd 524 (640)
..++..++ +..+..++......| -+|++.+ +..-+..+...+...|.+++++.. ..+...+. +..
T Consensus 51 ~~~~~~~~~t~al~~~~~~~~~~g--~~vl~~~--~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~i~~~~~~ 126 (356)
T cd06451 51 LTFLLSGSGTGAMEAALSNLLEPG--DKVLVGV--NGVFGDRWADMAERYGADVDVVEKPWGEAVSPEEIAEALEQHDIK 126 (356)
T ss_pred CEEEEecCcHHHHHHHHHHhCCCC--CEEEEec--CCchhHHHHHHHHHhCCCeEEeecCCCCCCCHHHHHHHHhccCCC
Confidence 44444444 444444444333333 3566654 222232233445557887777641 23333332 455
Q ss_pred EEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 525 RVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 525 kVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
.|++ .+.-...|.+.. --.++-+|+++++++++
T Consensus 127 ~v~i-~~~~~~~G~~~~---~~~i~~~a~~~~~~li~ 159 (356)
T cd06451 127 AVTL-THNETSTGVLNP---LEGIGALAKKHDALLIV 159 (356)
T ss_pred EEEE-eccCCCcccccC---HHHHHHHHHhcCCEEEE
Confidence 5554 233344555433 33477788999998887
No 67
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=61.99 E-value=1.5e+02 Score=32.31 Aligned_cols=103 Identities=17% Similarity=0.206 Sum_probs=51.2
Q ss_pred CCCEEEeecCcHHHHHHHHHHHH--cCCeeEEEEcCCCCCchHHHHH-HHHHhCCCceEEEech--------HHHHHhhh
Q 006577 454 DGDVLLTYGSSSAVEMILQHAHE--LGKQFRVVIVDSRPKHEGKLLL-RRLVRKGLSCTYTHIN--------AISYIIHE 522 (640)
Q Consensus 454 dgdvILT~g~SstV~~vL~~A~e--~Gk~f~ViV~ESRP~~eG~~La-~eL~~~GI~vTlI~Ds--------Av~~iM~~ 522 (640)
.+.+++|-|.+..+..+|..+.. .++.-+|++.+ +.+.....+ ..+...|+.+.++... .+...+..
T Consensus 64 ~~~v~~~~g~t~a~~~~l~~l~~~~~~~g~~Vi~~~--~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~ 141 (402)
T TIGR02006 64 SREIVFTSGATESNNLAIKGIAHFYKSKGNHIITSK--TEHKAVLDTCRYLEREGFEVTYLPPKSNGLIDLEELKAAIRD 141 (402)
T ss_pred CCeEEEeCCHHHHHHHHHHHHHHhhcCCCCEEEECC--CccHHHHHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhcCC
Confidence 34577776655555555443321 12333566653 344443333 4556679988887532 12222222
Q ss_pred ccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 523 VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 523 VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
-+++++-...=...| ++..+ ..|+-+|+.+++.|+|
T Consensus 142 ~~~lv~v~~~~n~tG-~~~~~--~~I~~l~~~~g~~liv 177 (402)
T TIGR02006 142 DTILVSIMHVNNEIG-VIQDI--AAIGEICRERKVFFHV 177 (402)
T ss_pred CCEEEEEECCCcCce-ecccH--HHHHHHHHHcCCEEEE
Confidence 123322222112223 22322 3578889999998876
No 68
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=61.37 E-value=83 Score=32.72 Aligned_cols=101 Identities=11% Similarity=0.095 Sum_probs=49.8
Q ss_pred hccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEec---hHHHHHhhh-----
Q 006577 451 KIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI---NAISYIIHE----- 522 (640)
Q Consensus 451 ~I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D---sAv~~iM~~----- 522 (640)
++...+.|++.+.+.....++..+...| -+|++ ++|.+..... .+...|+++..+.. ..+-.++.+
T Consensus 58 ~~~~~~~iv~~sg~~a~~~~~~~~~~~g--d~Vl~--~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~le~~i~~~~~~~ 131 (349)
T cd06454 58 FHGKEAALVFSSGYAANDGVLSTLAGKG--DLIIS--DSLNHASIID--GIRLSGAKKRIFKHNDMEDLEKLLREARRPY 131 (349)
T ss_pred HhCCCCEEEeccHHHHHHHHHHHhcCCC--CEEEE--ehhhhHHHHH--HHHHcCCceEEecCCCHHHHHHHHHHhhccC
Confidence 3433355655444444444444443333 24554 3455444332 23446887776532 233334433
Q ss_pred ccEEEEcceeEe-cCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 523 VTRVFLGASSVL-SNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 523 VdkVlvGADaIl-aNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
-.++++ ...+. ..| ++..+ -.|+-+|++|+++|++
T Consensus 132 ~~~~v~-~~~~~~~tG-~~~~~--~~i~~~~~~~~~~liv 167 (349)
T cd06454 132 GKKLIV-TEGVYSMDG-DIAPL--PELVDLAKKYGAILFV 167 (349)
T ss_pred CCeEEE-EeccccCCC-CccCH--HHHHHHHHHcCCEEEE
Confidence 123333 22333 234 33443 4567789999998887
No 69
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=61.29 E-value=1.3e+02 Score=32.14 Aligned_cols=102 Identities=15% Similarity=0.182 Sum_probs=51.3
Q ss_pred CCCEEEeecCcHHHHHHHHHHHH--cCCeeEEEEcCCCCCchHHHH-HHHHHhCCCceEEEech--------HHHHHhhh
Q 006577 454 DGDVLLTYGSSSAVEMILQHAHE--LGKQFRVVIVDSRPKHEGKLL-LRRLVRKGLSCTYTHIN--------AISYIIHE 522 (640)
Q Consensus 454 dgdvILT~g~SstV~~vL~~A~e--~Gk~f~ViV~ESRP~~eG~~L-a~eL~~~GI~vTlI~Ds--------Av~~iM~~ 522 (640)
...+++|.|.+..+..+|..+.. .+. -+|++.+. .+.+... ...+...|+.+.++... .+-..+..
T Consensus 59 ~~~i~~t~~~t~a~~~al~~~~~~~~~~-~~vv~~~~--~~~s~~~~~~~~~~~G~~v~~v~~~~~g~~~~~~l~~~i~~ 135 (379)
T TIGR03402 59 PDEIIFTSGGTESDNTAIKSALAAQPEK-RHIITTAV--EHPAVLSLCQHLEKQGYKVTYLPVDEEGRLDLEELRAAITD 135 (379)
T ss_pred CCeEEEeCcHHHHHHHHHHHHHHhcCCC-CeEEEccc--ccHHHHHHHHHHHHcCCEEEEEccCCCCcCCHHHHHHhcCC
Confidence 34577887766666666655432 222 23443322 2223222 34566679888887521 12222322
Q ss_pred ccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 523 VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 523 VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
=+++++-...-...|.+ ..+ -.|+-+|+.|+++++|
T Consensus 136 ~~~lv~i~~~~n~tG~~-~~~--~~I~~l~~~~g~~viv 171 (379)
T TIGR03402 136 DTALVSVMWANNETGTI-FPI--EEIGEIAKERGALFHT 171 (379)
T ss_pred CcEEEEEEcccCCeeec-ccH--HHHHHHHHHcCCEEEE
Confidence 12333222222233433 333 3588889999998876
No 70
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=60.95 E-value=2.7e+02 Score=31.21 Aligned_cols=96 Identities=19% Similarity=0.142 Sum_probs=57.8
Q ss_pred CCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEech---HHHHHhhhccEEEEcc
Q 006577 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN---AISYIIHEVTRVFLGA 530 (640)
Q Consensus 454 dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds---Av~~iM~~VdkVlvGA 530 (640)
.|.+++.++....+..+.+.+.+.|-...++++++.+..--..+...+.+.+.++.++.+. .+..++++. .+
T Consensus 299 ~gkrv~v~g~~~~~~~l~~~L~elG~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~d~~e~~~~l~~~-----~~ 373 (429)
T cd03466 299 FGRKAAIYGEPDFVVAITRFVLENGMVPVLIATGSESKKLKEKLEEDLKEYVEKCVILDGADFFDIESYAKEL-----KI 373 (429)
T ss_pred CCCEEEEEcCHHHHHHHHHHHHHCCCEEEEEEeCCCChHHHHHHHHHHHhcCCceEEEeCCCHHHHHHHHHhc-----CC
Confidence 5778899998877776666666778766556666554433333434555566666666553 333334432 23
Q ss_pred eeEecCCCeecccchHHHHHHHhhCCCcEEEec
Q 006577 531 SSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (640)
Q Consensus 531 DaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~a 563 (640)
|-++.| ..-..+|+..+||++.++
T Consensus 374 dliiG~---------s~~~~~a~~~~ip~~~~~ 397 (429)
T cd03466 374 DVLIGN---------SYGRRIAEKLGIPLIRIG 397 (429)
T ss_pred CEEEEC---------chhHHHHHHcCCCEEEec
Confidence 333322 223467899999998664
No 71
>KOG3075 consensus Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=60.50 E-value=61 Score=34.48 Aligned_cols=119 Identities=17% Similarity=0.078 Sum_probs=80.3
Q ss_pred HHHHHHHHHhccCCCEEEeecCcHHHHHHHHHH---HHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHH
Q 006577 442 RVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHA---HELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISY 518 (640)
Q Consensus 442 ~~Ia~~a~~~I~dgdvILT~g~SstV~~vL~~A---~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~ 518 (640)
+.-+.++.+....+-.|+=.|..++|...+... +.+|..-+|+++-+. .+.+..+.+.||++.+..+-
T Consensus 29 r~Aa~~avd~~~k~g~ViGiGsGstv~~~v~~i~q~l~~~~l~~vvgVPts-----~~s~q~~~~~gi~l~~~d~h---- 99 (261)
T KOG3075|consen 29 RLAAYKAVDNYVKNGMVIGIGSGSTVVYAVDRIGQLLFDGDLGNVVGVPTS-----FRSAQLALEYGIPLSDLDSH---- 99 (261)
T ss_pred HHHHhhhhhhhccCCeEEEecCccHHHHHHHHHHHHhcCCCcCceEecccc-----hhhHHHHHhcCCccccCCCC----
Confidence 344556666665566777888888876655554 445666667766443 34467888999999887653
Q ss_pred HhhhccEEEEcceeEecCCCeecccchHHH-HHHHhhCCCcEEEeccccccccc
Q 006577 519 IIHEVTRVFLGASSVLSNGTVCSRVGTACV-AMVAYGFHIPVLVCCEAYKFHER 571 (640)
Q Consensus 519 iM~~VdkVlvGADaIlaNG~VvNKiGT~~l-AlaAk~~~VPVyV~aetyKf~~~ 571 (640)
..+|+.|=|||-+-+|..++---|-... -..=--...-|||++...|++..
T Consensus 100 --p~iDlaidgADEvd~nln~ikggGg~l~qEk~v~~~akkfiviad~~k~~~~ 151 (261)
T KOG3075|consen 100 --PVIDLAIDGADEVDENLNLIKGGGGCLLQEKDVEGAAKKFIVIADSRKGSKG 151 (261)
T ss_pred --ceeEEEecCchhhCcCcceEEeccchhhHHHHHHHhhhceEEEeeccccchh
Confidence 3799999999999999987755554321 11222234567888888888843
No 72
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=60.46 E-value=43 Score=33.19 Aligned_cols=99 Identities=12% Similarity=0.066 Sum_probs=57.4
Q ss_pred EEeecCcHHHHH-HHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEe---chHHHHHhhhccEEEEcceeE
Q 006577 458 LLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH---INAISYIIHEVTRVFLGASSV 533 (640)
Q Consensus 458 ILT~g~SstV~~-vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~---DsAv~~iM~~VdkVlvGADaI 533 (640)
|+.+|-++.+-. ++..+.+ ..++|.++=-.+ -...+..|.+.|+.+.... ..++...++.+|.||+--...
T Consensus 1 I~V~GatG~~G~~v~~~L~~--~~~~V~~l~R~~---~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~ 75 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLS--AGFSVRALVRDP---SSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPS 75 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHH--TTGCEEEEESSS---HHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCS
T ss_pred CEEECCccHHHHHHHHHHHh--CCCCcEEEEecc---chhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcc
Confidence 678888766543 3344444 345555442222 3456788999998765333 256667777888887543222
Q ss_pred ecCCCeecccchHHHHHHHhhCCCcEEEeccc
Q 006577 534 LSNGTVCSRVGTACVAMVAYGFHIPVLVCCEA 565 (640)
Q Consensus 534 laNG~VvNKiGT~~lAlaAk~~~VPVyV~aet 565 (640)
. -.-.-....+.-+|+..||..||..+.
T Consensus 76 ~----~~~~~~~~~li~Aa~~agVk~~v~ss~ 103 (233)
T PF05368_consen 76 H----PSELEQQKNLIDAAKAAGVKHFVPSSF 103 (233)
T ss_dssp C----CCHHHHHHHHHHHHHHHT-SEEEESEE
T ss_pred h----hhhhhhhhhHHHhhhccccceEEEEEe
Confidence 1 111223455667888889999996544
No 73
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=60.26 E-value=68 Score=33.88 Aligned_cols=100 Identities=15% Similarity=0.114 Sum_probs=59.7
Q ss_pred cCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEec-hHHHHHhhhccEEEEcce
Q 006577 453 RDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI-NAISYIIHEVTRVFLGAS 531 (640)
Q Consensus 453 ~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D-sAv~~iM~~VdkVlvGAD 531 (640)
....+++|.|.+..+.. +..+...| +|++. .|.+.+... .+...|+.+..+.| ..+-..+++.+.|++ ..
T Consensus 63 ~~~~i~~t~G~~~~i~~-~~~~l~~g---~vl~~--~p~y~~~~~--~~~~~g~~~~~~~d~~~l~~~~~~~~~v~i-~~ 133 (330)
T TIGR01140 63 PAASVLPVNGAQEAIYL-LPRLLAPG---RVLVL--APTYSEYAR--AWRAAGHEVVELPDLDRLPAALEELDVLVL-CN 133 (330)
T ss_pred ChhhEEECCCHHHHHHH-HHHHhCCC---eEEEe--CCCcHHHHH--HHHHcCCEEEEeCCHHHHHhhcccCCEEEE-eC
Confidence 34567888776666554 44444333 45554 577766543 45678999988874 223334456665655 22
Q ss_pred eEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 532 SVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 532 aIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
-=-.-|.++..-.-..++-+|+.+++++++
T Consensus 134 p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~ 163 (330)
T TIGR01140 134 PNNPTGRLIPPETLLALAARLRARGGWLVV 163 (330)
T ss_pred CCCCCCCCCCHHHHHHHHHHhHhcCCEEEE
Confidence 222445555555555677788899997775
No 74
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=60.24 E-value=58 Score=28.82 Aligned_cols=81 Identities=19% Similarity=0.294 Sum_probs=51.0
Q ss_pred EEEeecCcHHHHHHHHHHHHc-CCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEech---HHHHHhh------hcc-E
Q 006577 457 VLLTYGSSSAVEMILQHAHEL-GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN---AISYIIH------EVT-R 525 (640)
Q Consensus 457 vILT~g~SstV~~vL~~A~e~-Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds---Av~~iM~------~Vd-k 525 (640)
+|-||.....+..+|....++ ...++|+|++..+.-+-...++++.+.+.+++++.-. ..+..+. .-+ .
T Consensus 3 vip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~~~~~~~~~~~~~~~i~~i~~~~n~g~~~~~n~~~~~a~~~~i 82 (169)
T PF00535_consen 3 VIPTYNEAEYLERTLESLLKQTDPDFEIIVVDDGSTDETEEILEEYAESDPNIRYIRNPENLGFSAARNRGIKHAKGEYI 82 (169)
T ss_dssp EEEESS-TTTHHHHHHHHHHHSGCEEEEEEEECS-SSSHHHHHHHHHCCSTTEEEEEHCCCSHHHHHHHHHHHH--SSEE
T ss_pred EEEeeCCHHHHHHHHHHHhhccCCCEEEEEeccccccccccccccccccccccccccccccccccccccccccccceeEE
Confidence 456666667788888877776 5678999999888666677778887777777777633 3333222 223 3
Q ss_pred EEEcceeEecCC
Q 006577 526 VFLGASSVLSNG 537 (640)
Q Consensus 526 VlvGADaIlaNG 537 (640)
+++-+|.++..+
T Consensus 83 ~~ld~D~~~~~~ 94 (169)
T PF00535_consen 83 LFLDDDDIISPD 94 (169)
T ss_dssp EEEETTEEE-TT
T ss_pred EEeCCCceEcHH
Confidence 455555555554
No 75
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=60.24 E-value=33 Score=40.29 Aligned_cols=110 Identities=15% Similarity=0.177 Sum_probs=61.0
Q ss_pred cCCCEEEeecCcHHHH-HHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhC-----C----CceEEE-----echHHH
Q 006577 453 RDGDVLLTYGSSSAVE-MILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRK-----G----LSCTYT-----HINAIS 517 (640)
Q Consensus 453 ~dgdvILT~g~SstV~-~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~-----G----I~vTlI-----~DsAv~ 517 (640)
.+|.+||+.|-++.+- .+++.+.++| ++|+++. |-......+...|.+. | ..+.++ ....+.
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LLk~G--~~Vval~-Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~ 154 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELLKLG--FRVRAGV-RSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIG 154 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC--CeEEEEe-CCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHH
Confidence 4688999999887654 4556666666 4666553 3222233444444331 2 112222 123344
Q ss_pred HHhhhccEEEEcceeEecC-----C-CeecccchHHHHHHHhhCCCcEEEeccc
Q 006577 518 YIIHEVTRVFLGASSVLSN-----G-TVCSRVGTACVAMVAYGFHIPVLVCCEA 565 (640)
Q Consensus 518 ~iM~~VdkVlvGADaIlaN-----G-~VvNKiGT~~lAlaAk~~~VPVyV~aet 565 (640)
..+..+|.||..+-....+ + .-+|..|+..+.-+|+.+++.-||+..+
T Consensus 155 ~aLggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVgRIV~VSS 208 (576)
T PLN03209 155 PALGNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKVNHFILVTS 208 (576)
T ss_pred HHhcCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCCCEEEEEcc
Confidence 5567888887654221100 0 1136678888888888888876665544
No 76
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=60.19 E-value=42 Score=31.32 Aligned_cols=73 Identities=18% Similarity=0.321 Sum_probs=53.6
Q ss_pred CCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEcc
Q 006577 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA 530 (640)
Q Consensus 454 dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGA 530 (640)
.|..||.+|..++...++..+++.|-+ +|+|+. |-......|+..+ .+..+.++.......++.++|.||...
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~-~i~i~n-Rt~~ra~~l~~~~--~~~~~~~~~~~~~~~~~~~~DivI~aT 83 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAK-EITIVN-RTPERAEALAEEF--GGVNIEAIPLEDLEEALQEADIVINAT 83 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSS-EEEEEE-SSHHHHHHHHHHH--TGCSEEEEEGGGHCHHHHTESEEEE-S
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCC-EEEEEE-CCHHHHHHHHHHc--CccccceeeHHHHHHHHhhCCeEEEec
Confidence 478999999999999999999887644 344443 5444556666666 556677777777778899999887553
No 77
>TIGR00045 glycerate kinase. The only characterized member of this family so far is the glycerate kinase GlxK (EC 2.7.1.31) of E. coli. This enzyme acts after glyoxylate carboligase and 2-hydroxy-3-oxopropionate reductase (tartronate semialdehyde reductase) in the conversion of glyoxylate to 3-phosphoglycerate (the D-glycerate pathway) as a part of allantoin degradation.
Probab=59.47 E-value=11 Score=41.87 Aligned_cols=50 Identities=16% Similarity=0.114 Sum_probs=37.7
Q ss_pred HHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEecccccc
Q 006577 517 SYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKF 568 (640)
Q Consensus 517 ~~iM~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~aetyKf 568 (640)
-..++++|+||.|==++- .....--..+.+|-.|+.|+|||+++|.+...
T Consensus 278 ~~~l~~ADlVITGEG~~D--~Qtl~GK~p~~Va~~A~~~~vPviai~G~v~~ 327 (375)
T TIGR00045 278 EQKIKDADLVITGEGRLD--RQSLMGKAPVGVAKRAKKYGVPVIAIAGSLGD 327 (375)
T ss_pred HHHhcCCCEEEECCCccc--ccccCCchHHHHHHHHHHhCCeEEEEecccCC
Confidence 445678999999976663 23333335678888999999999999998643
No 78
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=58.62 E-value=96 Score=35.00 Aligned_cols=98 Identities=18% Similarity=0.224 Sum_probs=47.0
Q ss_pred EEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHH-HH-HHHHHhCCCceEEEec----hHHHHHhhhccEEEEcc
Q 006577 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LL-LRRLVRKGLSCTYTHI----NAISYIIHEVTRVFLGA 530 (640)
Q Consensus 457 vILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~-~L-a~eL~~~GI~vTlI~D----sAv~~iM~~VdkVlvGA 530 (640)
.|++-+....+..+|....+.|. +|++... .+.|. .+ ...|...|+.++++.| ..+...+..=+++|+ .
T Consensus 87 ~v~fsSG~~Ai~~al~~ll~~Gd--~VI~~~~--~y~~t~~~~~~~l~~~Gi~v~~vd~~~d~e~l~~~l~~~tk~V~-~ 161 (437)
T PRK05613 87 AVAFASGQAAETAAILNLAGAGD--HIVTSPR--LYGGTETLFLVTLNRLGIEVTFVENPDDPESWQAAVQPNTKAFF-G 161 (437)
T ss_pred EEEeCCHHHHHHHHHHHhcCCCC--EEEECCC--ccHHHHHHHHHHHHhcCeEEEEECCCCCHHHHHHhCCccCeEEE-E
Confidence 44444444444444444333332 5665422 33332 22 3556667888887752 123333433233443 2
Q ss_pred eeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 531 SSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 531 DaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
+.+..+-..+. ---.|+-+|+.+|++|+|
T Consensus 162 e~~~Np~~~v~--di~~I~~la~~~gi~liv 190 (437)
T PRK05613 162 ETFANPQADVL--DIPAVAEVAHRNQVPLIV 190 (437)
T ss_pred ECCCCCCCccc--CHHHHHHHHHHcCCeEEE
Confidence 33222111222 244577788999998887
No 79
>TIGR03458 YgfH_subfam succinate CoA transferases. A closely related clade not included in this family are the Ach1p proteins of fungi which are acetyl-CoA hydrolases. This name has been applied to many of the proteins detected by this model, possibly erroneously.
Probab=57.92 E-value=1e+02 Score=35.58 Aligned_cols=116 Identities=16% Similarity=0.198 Sum_probs=66.2
Q ss_pred HHHHHhccCCCEEEeecCc--HH----HHHHHHHHHH---cC--CeeEEEEcCC-CC------CchH----------HHH
Q 006577 446 KHAVTKIRDGDVLLTYGSS--SA----VEMILQHAHE---LG--KQFRVVIVDS-RP------KHEG----------KLL 497 (640)
Q Consensus 446 ~~a~~~I~dgdvILT~g~S--st----V~~vL~~A~e---~G--k~f~ViV~ES-RP------~~eG----------~~L 497 (640)
+.|+.+|++|++|..-+++ +. +..+.++..+ .| ++++++..-+ .+ ...| ...
T Consensus 6 eEAv~lIkDGdtI~iGgftg~~~P~aLl~ALa~r~~~~~~~g~p~~vtll~~~~~g~~~~~~l~~~g~v~~~is~~~sp~ 85 (485)
T TIGR03458 6 DEAAALIKDGMTVGMSGFTPAGYPKAVPAALAKRAKAAHAAGEPFKITLLTGASTGPELDGVLAEADAIARRLPYQSDPT 85 (485)
T ss_pred HHHHHhCCCCCEEEECCCCCCCCHHHHHHHHHHHHHhhhccCCCccEEEEEecccCCcccccccccCCEEEEecccCCHH
Confidence 4467799999999887652 22 2223333322 12 3555554211 11 1111 122
Q ss_pred HHHHHhCC-CceEEEechHHHHHhh-----hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEe
Q 006577 498 LRRLVRKG-LSCTYTHINAISYIIH-----EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (640)
Q Consensus 498 a~eL~~~G-I~vTlI~DsAv~~iM~-----~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~ 562 (640)
.+++.+.| ++++-+.-+.+...++ ++|.+|+=+...-.+|.+.=-..+.....+++. ..-|+|-
T Consensus 86 ~Rkai~~G~i~y~P~~ls~ip~~lrag~~g~~DValI~VSp~D~~Gn~slg~s~~~~~~aa~a-Ak~VIvE 155 (485)
T TIGR03458 86 LRKKINAGEVMYVDMHLSHVAQQLRYGFLGKVDVAVIEAAAITEDGRIIPTSSVGNNPTFLEL-ADKVIVE 155 (485)
T ss_pred HHHHHHcCCCEEEeccHHHHHHHHHhcCCCCCCEEEEEEEeCCCCceEEEecccchHHHHHHh-CCEEEEE
Confidence 45666666 4555566777777774 689999999999999988655544433334444 3345543
No 80
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=57.67 E-value=1.3e+02 Score=31.95 Aligned_cols=117 Identities=13% Similarity=0.154 Sum_probs=67.1
Q ss_pred HHHHHHHHhccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCC------Cch--------H----HHHHHHHHhC
Q 006577 443 VIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRP------KHE--------G----KLLLRRLVRK 504 (640)
Q Consensus 443 ~Ia~~a~~~I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP------~~e--------G----~~La~eL~~~ 504 (640)
.+++.+.+.|.+ ..|+.+|..++=-.+...+...|.. ++.++|... ..| | ..|+++|.+.
T Consensus 19 L~G~e~~~kL~~-s~VlVvG~GGVGs~vae~Lar~GVg-~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~I 96 (268)
T PRK15116 19 LYGEKALQLFAD-AHICVVGIGGVGSWAAEALARTGIG-AITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQI 96 (268)
T ss_pred HhCHHHHHHhcC-CCEEEECcCHHHHHHHHHHHHcCCC-EEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhH
Confidence 467777778764 6788888887655555555566733 344444221 111 1 1334666665
Q ss_pred C--CceEEEec----hHHHHHh-hhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEeccc-ccccc
Q 006577 505 G--LSCTYTHI----NAISYII-HEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEA-YKFHE 570 (640)
Q Consensus 505 G--I~vTlI~D----sAv~~iM-~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~aet-yKf~~ 570 (640)
. +.++.+.+ ..+..++ .+.|.||...|.+. .| ..+.-.|+.+++|||.+... -|+++
T Consensus 97 NP~~~V~~i~~~i~~e~~~~ll~~~~D~VIdaiD~~~------~k---~~L~~~c~~~~ip~I~~gGag~k~dp 161 (268)
T PRK15116 97 NPECRVTVVDDFITPDNVAEYMSAGFSYVIDAIDSVR------PK---AALIAYCRRNKIPLVTTGGAGGQIDP 161 (268)
T ss_pred CCCcEEEEEecccChhhHHHHhcCCCCEEEEcCCCHH------HH---HHHHHHHHHcCCCEEEECCcccCCCC
Confidence 4 33443322 1222333 46888877766542 22 24566789999999987655 44444
No 81
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=57.50 E-value=85 Score=35.16 Aligned_cols=72 Identities=13% Similarity=0.113 Sum_probs=45.0
Q ss_pred CCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEcc
Q 006577 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA 530 (640)
Q Consensus 455 gdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGA 530 (640)
+..|+.+|...+=..+.+.+++.| +.|++.|.++.-.=..++.+|.+.||.+.+-.+. ...+.+.|.||+..
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G--~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~--~~~~~~~dlVV~Sp 85 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLG--AKVTAFDKKSEEELGEVSNELKELGVKLVLGENY--LDKLDGFDVIFKTP 85 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCC--CEEEEECCCCCccchHHHHHHHhCCCEEEeCCCC--hHHhccCCEEEECC
Confidence 457788777655444444555555 6888899776432223445688889877654432 23346789988874
No 82
>PRK05839 hypothetical protein; Provisional
Probab=57.45 E-value=1.1e+02 Score=33.05 Aligned_cols=105 Identities=11% Similarity=0.070 Sum_probs=55.2
Q ss_pred ccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechH-HHHH-------hhhc
Q 006577 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA-ISYI-------IHEV 523 (640)
Q Consensus 452 I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsA-v~~i-------M~~V 523 (640)
+....+++|.|.+..+..++......+.. ..++++ .|.+.+...+ +...|+++..+.... -++. .+++
T Consensus 81 ~~~~~I~it~G~~~al~~~~~~~~~~~~g-d~vlv~-~P~y~~~~~~--~~~~g~~v~~v~~~~~~~~~~d~~~~~~~~~ 156 (374)
T PRK05839 81 LKENELIPTFGTREVLFNFPQFVLFDKQN-PTIAYP-NPFYQIYEGA--AIASRAKVLLMPLTKENDFTPSLNEKELQEV 156 (374)
T ss_pred CCcceEEEecCcHHHHHHHHHHHhcCCCC-CEEEEC-CCCchhhHHH--HHhcCCEEEEeecccccCCcCCcchhhhccc
Confidence 45567888888887665544433211111 344444 4777665443 346788887775431 1121 2234
Q ss_pred cEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 524 TRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 524 dkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
..|++- .-=-..|.++.+-=-..++-.|+.|++.+++
T Consensus 157 k~v~i~-nP~NPTG~~~s~~~l~~i~~~~~~~~~~ii~ 193 (374)
T PRK05839 157 DLVILN-SPNNPTGRTLSLEELIEWVKLALKHDFILIN 193 (374)
T ss_pred cEEEEe-CCCCCcCcccCHHHHHHHHHHHHHcCCEEEe
Confidence 444431 1111124444444445566678999998875
No 83
>PLN02409 serine--glyoxylate aminotransaminase
Probab=57.27 E-value=95 Score=33.99 Aligned_cols=97 Identities=15% Similarity=0.137 Sum_probs=47.9
Q ss_pred EEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEech--------HHHHHhh-----hc
Q 006577 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN--------AISYIIH-----EV 523 (640)
Q Consensus 457 vILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds--------Av~~iM~-----~V 523 (640)
+|+|-+-+..++.++....+.| -+|++.+ +..-+..+...+...|+++..+... .+-..+. ++
T Consensus 63 vi~~~~gt~a~~~a~~~~~~~G--d~Vlv~~--~~~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~l~~~l~~~~~~~~ 138 (401)
T PLN02409 63 FIFPTTGTGAWESALTNTLSPG--DKVVSFR--IGQFSLLWIDQMQRLNFDVDVVESPWGQGADLDILKSKLRQDTNHKI 138 (401)
T ss_pred EEEeCCcHHHHHHHHHhcCCCC--CEEEEeC--CCchhHHHHHHHHHcCCceEEEECCCCCCCCHHHHHHHHhhCcCCCc
Confidence 3444333344444454444333 3566666 3444555555556678887777522 2222332 23
Q ss_pred cEEEEcceeEecCCCeecccchHHHHHH--HhhCCCcEEE
Q 006577 524 TRVFLGASSVLSNGTVCSRVGTACVAMV--AYGFHIPVLV 561 (640)
Q Consensus 524 dkVlvGADaIlaNG~VvNKiGT~~lAla--Ak~~~VPVyV 561 (640)
..|++ .+.-...|.+.. --.++-+ |+.+++.++|
T Consensus 139 k~v~~-~~~~~~tG~~~~---~~~i~~l~~~~~~g~~~vv 174 (401)
T PLN02409 139 KAVCV-VHNETSTGVTND---LAGVRKLLDCAQHPALLLV 174 (401)
T ss_pred cEEEE-EeecccccccCC---HHHHHHHHhhhccCcEEEE
Confidence 33433 333334554433 2234455 7888877665
No 84
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=57.22 E-value=1e+02 Score=33.65 Aligned_cols=109 Identities=13% Similarity=0.148 Sum_probs=67.9
Q ss_pred HHHHHHHHhccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCC------Cc----------hH----HHHHHHHH
Q 006577 443 VIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRP------KH----------EG----KLLLRRLV 502 (640)
Q Consensus 443 ~Ia~~a~~~I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP------~~----------eG----~~La~eL~ 502 (640)
.|+..+.++|.+ ..||..|..+.--.++..+...|.. ++.++|..- .. +| ..+++.|.
T Consensus 13 ~~G~~~Q~~L~~-~~VlIiG~GglGs~va~~La~aGvg-~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~ 90 (338)
T PRK12475 13 GIGEEGQRKIRE-KHVLIVGAGALGAANAEALVRAGIG-KLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLR 90 (338)
T ss_pred hcCHHHHHhhcC-CcEEEECCCHHHHHHHHHHHHcCCC-EEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHH
Confidence 467777777764 6789999887756666666666754 344333321 00 12 12235666
Q ss_pred hC--CCceEEEe----chHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEe
Q 006577 503 RK--GLSCTYTH----INAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (640)
Q Consensus 503 ~~--GI~vTlI~----DsAv~~iM~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~ 562 (640)
+. ++.++.+. ...+..+++++|.||.+.|.... -+.+.-+|+.+++|++..
T Consensus 91 ~inp~v~i~~~~~~~~~~~~~~~~~~~DlVid~~D~~~~---------r~~in~~~~~~~ip~i~~ 147 (338)
T PRK12475 91 KINSEVEIVPVVTDVTVEELEELVKEVDLIIDATDNFDT---------RLLINDLSQKYNIPWIYG 147 (338)
T ss_pred HHCCCcEEEEEeccCCHHHHHHHhcCCCEEEEcCCCHHH---------HHHHHHHHHHcCCCEEEE
Confidence 54 45555443 23355667889999999875432 255777899999999865
No 85
>PRK10342 glycerate kinase I; Provisional
Probab=57.13 E-value=14 Score=41.30 Aligned_cols=63 Identities=21% Similarity=0.235 Sum_probs=44.3
Q ss_pred hHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEeccccccc
Q 006577 493 EGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFH 569 (640)
Q Consensus 493 eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~aetyKf~ 569 (640)
.|..+.-+|.. .-..|+.+|.||.|==++ |.....--....||-.|+.|+||||++|.+...+
T Consensus 267 ~G~d~v~~~~~------------l~~~l~~ADLVITGEG~~--D~QTl~GK~p~gVa~~A~~~~vPviai~G~~~~~ 329 (381)
T PRK10342 267 SGIEIVTTALN------------LEEHIHDCTLVITGEGRI--DSQSIHGKVPIGVANVAKKYHKPVIGIAGSLTDD 329 (381)
T ss_pred CHHHHHHHhcC------------HHHHhccCCEEEECCCcC--cccccCCccHHHHHHHHHHhCCCEEEEecccCCC
Confidence 67777655542 345567899999996555 2333333446678889999999999999986443
No 86
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=57.11 E-value=1.4e+02 Score=32.85 Aligned_cols=98 Identities=17% Similarity=0.217 Sum_probs=51.4
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHH-HHH-HHHHhCCCceEEEec---hHHHHHhh-hccEEEEc
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLL-RRLVRKGLSCTYTHI---NAISYIIH-EVTRVFLG 529 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~-~La-~eL~~~GI~vTlI~D---sAv~~iM~-~VdkVlvG 529 (640)
+.|+|-+-...+..+|......|. +|++. ++.+.+. .+. ..+...|+.++++.- ..+...+. +...|++-
T Consensus 78 ~~v~~ssG~~Ai~~al~al~~~Gd--~Vi~~--~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i~~~tklV~ie 153 (390)
T PRK08133 78 ACVATASGMAAILAVVMALLQAGD--HVVSS--RSLFGSTVSLFEKIFARFGIETTFVDLTDLDAWRAAVRPNTKLFFLE 153 (390)
T ss_pred cEEEECCHHHHHHHHHHHHhCCCC--EEEEc--cCcchhHHHHHHHHHHHcCcEEEEECCCCHHHHHHhcCcCCeEEEEE
Confidence 456665444555555555444443 56553 3444443 333 456678999888743 23333343 33344431
Q ss_pred ceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 530 ADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
.---..|.+.. --.|+-+|++++++++|
T Consensus 154 -~p~NptG~v~d---l~~I~~la~~~gi~liv 181 (390)
T PRK08133 154 -TPSNPLTELAD---IAALAEIAHAAGALLVV 181 (390)
T ss_pred -CCCCCCCCcCC---HHHHHHHHHHcCCEEEE
Confidence 11112343332 14567789999998886
No 87
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=56.75 E-value=31 Score=33.19 Aligned_cols=101 Identities=17% Similarity=0.160 Sum_probs=65.4
Q ss_pred ccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEcce
Q 006577 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGAS 531 (640)
Q Consensus 452 I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGAD 531 (640)
+..|+.|...||=.- ++.... .+..+|+|+|=.|.+.|.. +-. +.+....++++++|.||+-..
T Consensus 8 ~~~~~~V~~VG~f~P---~~~~l~--~~~~~v~v~d~~~~~~~~~----------~~~-~~~~~~~~~l~~aD~viiTGs 71 (147)
T PF04016_consen 8 IGPGDKVGMVGYFQP---LVEKLK--ERGAEVRVFDLNPDNIGEE----------PGD-VPDEDAEEILPWADVVIITGS 71 (147)
T ss_dssp TTTTSEEEEES--HC---CHHHHC--CCCSEEEEEESSGGG--SS----------CT--EEGGGHHHHGGG-SEEEEECH
T ss_pred hcCCCEEEEEcCcHH---HHHHHh--cCCCCEEEEECCCCCCCCC----------CCc-CCHHHHHHHHccCCEEEEEee
Confidence 567899999997422 233332 3667899999998765431 111 188999999999999999887
Q ss_pred eEecCCCeecccchHHHHHHHhhCCCcEEEecccccccccccCCC
Q 006577 532 SVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDS 576 (640)
Q Consensus 532 aIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~aetyKf~~~~~~ds 576 (640)
++. ||+ +.-=|.....+.++++..+|.-+++....+.
T Consensus 72 Tlv-N~T-------i~~iL~~~~~~~~vil~GpS~~~~P~~l~~~ 108 (147)
T PF04016_consen 72 TLV-NGT-------IDDILELARNAREVILYGPSAPLHPEALFDY 108 (147)
T ss_dssp HCC-TTT-------HHHHHHHTTTSSEEEEESCCGGS-GGGGCCT
T ss_pred eee-cCC-------HHHHHHhCccCCeEEEEecCchhhHHHHHhC
Confidence 765 543 3322222225899999999998888665543
No 88
>COG1929 Glycerate kinase [Carbohydrate transport and metabolism]
Probab=56.48 E-value=12 Score=41.34 Aligned_cols=51 Identities=16% Similarity=0.255 Sum_probs=37.8
Q ss_pred HHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEecccccc
Q 006577 516 ISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKF 568 (640)
Q Consensus 516 v~~iM~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~aetyKf 568 (640)
.-..++++|+||.|==++-+. ++..|+ ..-+|-+||.|+|||+++|.+.+-
T Consensus 278 le~~v~daDLVITGEGr~D~Q-s~~GK~-pigVA~~Akk~~vPvIaiaGs~~~ 328 (378)
T COG1929 278 LEDAVKDADLVITGEGRIDSQ-SLHGKT-PIGVAKLAKKYGVPVIAIAGSLGE 328 (378)
T ss_pred HHHhhccCCEEEeCCCccccc-ccCCcc-chHHHHhhhhhCCCEEEEeccccc
Confidence 345678999999997776433 343333 445778999999999999998644
No 89
>PRK05414 urocanate hydratase; Provisional
Probab=56.41 E-value=85 Score=36.53 Aligned_cols=115 Identities=23% Similarity=0.341 Sum_probs=79.5
Q ss_pred chHHHHHHHHHHHHHHHhcCCcccc-HHHHHHHHHHHHHhc--------------------CCCCCHHHHHHHHHHHHHH
Q 006577 373 LSRDLTAKISSYVSFLIDCRPLSVS-MGNAIRFLKSQIAKI--------------------PISLSESEAKATLHSDIER 431 (640)
Q Consensus 373 ~srdL~~~L~~~i~~L~~aRPtsvs-m~NAIr~lk~~I~~l--------------------~~~~~~~eaK~~L~e~Id~ 431 (640)
...+|.+.|+.+-+...+.+|.|++ ++|+.+-+-..++.. +...+.+|+.+...++-+.
T Consensus 215 ~~~~Ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~~~i~pDlvtDQTSaHdp~~GY~P~G~t~ee~~~lr~~dp~~ 294 (556)
T PRK05414 215 KADDLDEALALAEEAKAAGEPLSIGLLGNAADVLPELVRRGIRPDLVTDQTSAHDPLNGYLPVGWTLEEAAELRAEDPEE 294 (556)
T ss_pred EcCCHHHHHHHHHHHHHcCCceEEEEeccHHHHHHHHHHcCCCCCccCcCccccCcccccCCCCCCHHHHHHHHHhCHHH
Confidence 4556777788877888888999987 899988777666541 1234688999888888888
Q ss_pred HHHHHHHHHHHHHHHHHH---HhccCCCEEEeecCcHH-----------------HHHHHHHHHHcCC-eeEEEEcCCCC
Q 006577 432 FINEKIILADRVIVKHAV---TKIRDGDVLLTYGSSSA-----------------VEMILQHAHELGK-QFRVVIVDSRP 490 (640)
Q Consensus 432 fi~E~i~~A~~~Ia~~a~---~~I~dgdvILT~g~Sst-----------------V~~vL~~A~e~Gk-~f~ViV~ESRP 490 (640)
|.+ .+.+.|.+|.. ++-..|..+.-|||+-. |..+|+-.+..|+ .||=+|+-..|
T Consensus 295 ~~~----~~~~Sm~rhv~Am~~~~~~G~~~fDYGN~~r~~a~~aG~~~aF~~P~fV~~~irplF~~G~GPFRWvalSGdp 370 (556)
T PRK05414 295 FVK----AAKASMARHVEAMLAFQARGAYVFDYGNNIRQMAFDAGVENAFDFPGFVPAYIRPLFCEGKGPFRWVALSGDP 370 (556)
T ss_pred HHH----HHHHHHHHHHHHHHHHHHCCCeeeeccHHHHHHHHHCCccccCCCCCchhhhcchhhhcCCCCceEEEcCCCH
Confidence 864 35666766653 44457888888887632 5556655555554 36666666655
Q ss_pred C
Q 006577 491 K 491 (640)
Q Consensus 491 ~ 491 (640)
.
T Consensus 371 e 371 (556)
T PRK05414 371 E 371 (556)
T ss_pred H
Confidence 3
No 90
>PRK15482 transcriptional regulator MurR; Provisional
Probab=55.80 E-value=1.3e+02 Score=31.26 Aligned_cols=43 Identities=16% Similarity=-0.053 Sum_probs=34.6
Q ss_pred CCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEcc
Q 006577 488 SRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA 530 (640)
Q Consensus 488 SRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGA 530 (640)
++-..+-..+++.+.+.|+++..|+|+..+.+-+.+|.+|.-.
T Consensus 192 sg~t~~~~~~~~~a~~~g~~iI~IT~~~~s~la~~ad~~l~~~ 234 (285)
T PRK15482 192 SGSKKEIVLCAEAARKQGATVIAITSLADSPLRRLAHFTLDTV 234 (285)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchHHhCCEEEEcC
Confidence 3333455666788999999999999999999999999998753
No 91
>PLN02206 UDP-glucuronate decarboxylase
Probab=55.76 E-value=53 Score=36.89 Aligned_cols=109 Identities=15% Similarity=0.132 Sum_probs=61.9
Q ss_pred CCCEEEeecCcHHHHH-HHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEccee
Q 006577 454 DGDVLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASS 532 (640)
Q Consensus 454 dgdvILT~g~SstV~~-vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGADa 532 (640)
.+.+||..|-++.|=. +++.+.++| .+|++++.........+...+. ...+.++.-...-.++.++|.||=-|..
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G--~~V~~ld~~~~~~~~~~~~~~~--~~~~~~i~~D~~~~~l~~~D~ViHlAa~ 193 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARG--DSVIVVDNFFTGRKENVMHHFS--NPNFELIRHDVVEPILLEVDQIYHLACP 193 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCc--CEEEEEeCCCccchhhhhhhcc--CCceEEEECCccChhhcCCCEEEEeeee
Confidence 4578999999988755 444455555 5677765332211112212222 2334554322222334578888876632
Q ss_pred EecCCC--------eecccchHHHHHHHhhCCCcEEEecccc
Q 006577 533 VLSNGT--------VCSRVGTACVAMVAYGFHIPVLVCCEAY 566 (640)
Q Consensus 533 IlaNG~--------VvNKiGT~~lAlaAk~~~VPVyV~aety 566 (640)
...... -.|-.||..+.-+|+.++++|+.+.-..
T Consensus 194 ~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g~r~V~~SS~~ 235 (442)
T PLN02206 194 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSE 235 (442)
T ss_pred cchhhhhcCHHHHHHHHHHHHHHHHHHHHHhCCEEEEECChH
Confidence 211111 1677899999999999999877665543
No 92
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=55.61 E-value=12 Score=37.37 Aligned_cols=65 Identities=15% Similarity=0.168 Sum_probs=49.2
Q ss_pred HHHHHHHhCCCceEEEechHHHH-HhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEe
Q 006577 496 LLLRRLVRKGLSCTYTHINAISY-IIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (640)
Q Consensus 496 ~La~eL~~~GI~vTlI~DsAv~~-iM~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~ 562 (640)
.++..|.+.|++|.+...+++.. -+.+.|.|||||..= -|..--.++...-.-...-.+.|+-+.
T Consensus 20 ~iA~~L~e~g~qvdi~dl~~~~~~~l~~ydavVIgAsI~--~~h~~~~~~~Fv~k~~e~L~~kP~A~f 85 (175)
T COG4635 20 YIASHLRESGIQVDIQDLHAVEEPALEDYDAVVIGASIR--YGHFHEAVQSFVKKHAEALSTKPSAFF 85 (175)
T ss_pred HHHHHhhhcCCeeeeeehhhhhccChhhCceEEEecchh--hhhhHHHHHHHHHHHHHHHhcCCceEE
Confidence 55678999999999999999987 567999999999643 355556666666666666667776543
No 93
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=54.76 E-value=1.1e+02 Score=33.40 Aligned_cols=103 Identities=16% Similarity=0.258 Sum_probs=51.5
Q ss_pred ccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEech----------HHHHHhh
Q 006577 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN----------AISYIIH 521 (640)
Q Consensus 452 I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds----------Av~~iM~ 521 (640)
+....+++|.|.+..+..++....+.|. +|++. .|.+.+.. ..+...|+++..+... .+-..+.
T Consensus 102 ~~~~~i~it~G~~~al~~~~~~~~~~gd--~vlv~--~P~y~~~~--~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~ 175 (412)
T PTZ00433 102 IKKDNVVLCSGVSHAILMALTALCDEGD--NILVP--APGFPHYE--TVCKAYGIEMRFYNCRPEKDWEADLDEIRRLVD 175 (412)
T ss_pred CChhhEEEeCChHHHHHHHHHHhcCCCC--EEEEc--cCCcccHH--HHHHHcCCEEEEEecCccccCcCCHHHHHHHhc
Confidence 4455788888888776666655443332 44443 35555433 3355568777766521 1111122
Q ss_pred -hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 522 -EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 522 -~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
++.+|++ +.-=-..|.++.+-=-..++-+|++|++.+++
T Consensus 176 ~~~~~i~~-~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~ 215 (412)
T PTZ00433 176 DRTKALIM-TNPSNPCGSNFSRKHVEDIIRLCEELRLPLIS 215 (412)
T ss_pred cCceEEEE-eCCCCCCCcccCHHHHHHHHHHHHHcCCeEEE
Confidence 3334433 11111123333322234556677888887765
No 94
>PRK13938 phosphoheptose isomerase; Provisional
Probab=54.48 E-value=2.5e+02 Score=28.44 Aligned_cols=37 Identities=3% Similarity=-0.175 Sum_probs=29.3
Q ss_pred chHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEE
Q 006577 492 HEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFL 528 (640)
Q Consensus 492 ~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlv 528 (640)
.+=..+++.+.+.|+++..|+.+.-+.+.+.+|.+|.
T Consensus 127 ~~vi~a~~~Ak~~G~~vI~iT~~~~s~La~~aD~~l~ 163 (196)
T PRK13938 127 MSVLRAAKTARELGVTVVAMTGESGGQLAEFADFLIN 163 (196)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCChhhhhCCEEEE
Confidence 3444566888889999999998888888888888774
No 95
>CHL00194 ycf39 Ycf39; Provisional
Probab=54.42 E-value=75 Score=33.33 Aligned_cols=102 Identities=17% Similarity=0.167 Sum_probs=61.4
Q ss_pred EEEeecCcHHHHH-HHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEE--ec-hHHHHHhhhccEEEEccee
Q 006577 457 VLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT--HI-NAISYIIHEVTRVFLGASS 532 (640)
Q Consensus 457 vILT~g~SstV~~-vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI--~D-sAv~~iM~~VdkVlvGADa 532 (640)
+||..|-++.+=. +++.+.++| ++|+++.-++. . +..|...|+.+... .| ..+..+++.+|.||--+..
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g--~~V~~l~R~~~----~-~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~~ 74 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEG--YQVRCLVRNLR----K-ASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDASTS 74 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCC--CeEEEEEcChH----H-hhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCCC
Confidence 5888898887755 445666666 45655532221 1 23344456655432 22 3566778889988865433
Q ss_pred EecCCC---eecccchHHHHHHHhhCCCcEEEeccc
Q 006577 533 VLSNGT---VCSRVGTACVAMVAYGFHIPVLVCCEA 565 (640)
Q Consensus 533 IlaNG~---VvNKiGT~~lAlaAk~~~VPVyV~aet 565 (640)
...+.. -+|..|+..+.-+|++.+|.-+|...+
T Consensus 75 ~~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss 110 (317)
T CHL00194 75 RPSDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSI 110 (317)
T ss_pred CCCCccchhhhhHHHHHHHHHHHHHcCCCEEEEecc
Confidence 222211 236678888988999999976665444
No 96
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=54.33 E-value=1.2e+02 Score=34.21 Aligned_cols=101 Identities=15% Similarity=0.218 Sum_probs=62.3
Q ss_pred cCCCEEEeecCcHHHHHHHHH---HHH-cCCeeEEEEcCCCCCchHH-HHHHHHHhCCCceEEEechHHHHH-----hh-
Q 006577 453 RDGDVLLTYGSSSAVEMILQH---AHE-LGKQFRVVIVDSRPKHEGK-LLLRRLVRKGLSCTYTHINAISYI-----IH- 521 (640)
Q Consensus 453 ~dgdvILT~g~SstV~~vL~~---A~e-~Gk~f~ViV~ESRP~~eG~-~La~eL~~~GI~vTlI~DsAv~~i-----M~- 521 (640)
...++|.|-|-+.....+|.- ++. +.+.-++|+.... .... ..++.|...|++|||+.-..-+.+ .+
T Consensus 60 ~~~eIiFTSG~TEsnNlaI~g~~~a~~~~~~~~HIIts~iE--H~aVl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~L~~a 137 (386)
T COG1104 60 DPEEIIFTSGATESNNLAIKGAALAYRNAQKGKHIITSAIE--HPAVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEA 137 (386)
T ss_pred CCCeEEEecCCcHHHHHHHHhhHHhhhcccCCCeEEEcccc--cHHHHHHHHHHHhcCCeEEEeCCCCCCeEcHHHHHHh
Confidence 346899999999877666654 222 1234566665432 1111 234778778999999985532221 11
Q ss_pred -hccEEEEcceeEecCCCeecccchHH----HHHHHhhCCCcEEE
Q 006577 522 -EVTRVFLGASSVLSNGTVCSRVGTAC----VAMVAYGFHIPVLV 561 (640)
Q Consensus 522 -~VdkVlvGADaIlaNG~VvNKiGT~~----lAlaAk~~~VPVyV 561 (640)
+=|.++|. .+. +=|-+||.| |+-+||+++|+|.|
T Consensus 138 l~~~T~LVS--im~----aNnE~G~IQpI~ei~~i~k~~~i~fHv 176 (386)
T COG1104 138 LRPDTILVS--IMH----ANNETGTIQPIAEIGEICKERGILFHV 176 (386)
T ss_pred cCCCceEEE--EEe----cccCeeecccHHHHHHHHHHcCCeEEE
Confidence 12333333 233 447889865 88899999999987
No 97
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=54.17 E-value=1.5e+02 Score=32.33 Aligned_cols=98 Identities=15% Similarity=0.136 Sum_probs=49.0
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHH-HHH-HHHHhCCCceEEEech---HHHHHhhhccEEEEcc
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLL-RRLVRKGLSCTYTHIN---AISYIIHEVTRVFLGA 530 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~-~La-~eL~~~GI~vTlI~Ds---Av~~iM~~VdkVlvGA 530 (640)
+.|++-+.+..+..++ ...+.| -+|++.+ +.+.|. .+. ..+...|+.++++... .+-..+..=+++|+-.
T Consensus 64 ~~l~~~sG~~al~~~l-~ll~~G--d~Vl~~~--~~y~~~~~~~~~~~~~~G~~v~~vd~~d~~~le~~i~~~tklv~le 138 (378)
T TIGR01329 64 RAFAFSSGMAALDVIT-RLLNNG--DEIIAGD--DLYGGTDRLLTQVVPRSGVVVVHVDTTDLDKVKAALGPKTKLVLLE 138 (378)
T ss_pred cEEEECCHHHHHHHHH-HHhCCC--CEEEEcC--CCchHHHHHHHHHHHHcCcEEEEeCCCCHHHHHHhcCcCceEEEEE
Confidence 4555544344343333 344444 3566653 455553 333 3455679998887632 2333333222333322
Q ss_pred eeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 531 SSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 531 DaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
..--..|.+.. --.++-+|++++++++|
T Consensus 139 ~psnptg~v~d---l~~I~~la~~~g~~viv 166 (378)
T TIGR01329 139 SPTNPLQKIVD---IRKISEMAHAQNALVVV 166 (378)
T ss_pred CCCCCCCeeec---HHHHHHHHHHcCCEEEE
Confidence 12122343332 34567788999988887
No 98
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=54.08 E-value=1.9e+02 Score=31.98 Aligned_cols=98 Identities=18% Similarity=0.131 Sum_probs=52.7
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHH-HHH-HHHHhCCCceEEEech---HHHHHhh-hccEEEEc
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLL-RRLVRKGLSCTYTHIN---AISYIIH-EVTRVFLG 529 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~-~La-~eL~~~GI~vTlI~Ds---Av~~iM~-~VdkVlvG 529 (640)
+.|++-+-+..+..+|......| -+|++.+. .+.+. .+. ..+...|+.++++... .+...+. +...|++
T Consensus 87 ~al~~~sG~~Ai~~~l~all~~G--d~Vl~~~~--~~~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~ai~~~tklV~~- 161 (403)
T PRK07810 87 ACFATASGMSAVFTALGALLGAG--DRLVAARS--LFGSCFVVCNEILPRWGVETVFVDGEDLSQWEEALSVPTQAVFF- 161 (403)
T ss_pred cEEEECChHHHHHHHHHHHhCCC--CEEEEccC--CcchHHHHHHHHHHHcCcEEEEECCCCHHHHHHhcCcCceEEEE-
Confidence 56666555555555555544434 36666653 23232 333 4566789999888533 2333333 3333433
Q ss_pred ceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 530 ADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
..-.-..|.++. --.|+-+|++++++|+|
T Consensus 162 esp~Nptg~v~d---l~~I~~la~~~g~~viv 190 (403)
T PRK07810 162 ETPSNPMQSLVD---IAAVSELAHAAGAKVVL 190 (403)
T ss_pred ECCCCCCCeecC---HHHHHHHHHHcCCEEEE
Confidence 111112343332 44577789999998876
No 99
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=53.97 E-value=1.3e+02 Score=33.14 Aligned_cols=97 Identities=21% Similarity=0.208 Sum_probs=52.5
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHH-HHHHHHHhCCCceEEEe--chHHHHHhh--hccEEEEcc
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLLRRLVRKGLSCTYTH--INAISYIIH--EVTRVFLGA 530 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~-~La~eL~~~GI~vTlI~--DsAv~~iM~--~VdkVlvGA 530 (640)
+.|+|-+-+..+..+|......|. +|++. .|.+.+. .+...+...|+.+.++. ...+...+. +...|++
T Consensus 70 ~~l~~~sG~~Ai~~~l~~ll~~GD--~Vlv~--~~~y~~~~~~~~~~~~~g~~v~~~~~d~~~l~~~i~~~~tklV~i-- 143 (385)
T PRK08574 70 DALAFNSGMAAISTLFFSLLKAGD--RVVLP--MEAYGTTLRLLKSLEKFGVKVVLAYPSTEDIIEAIKEGRTKLVFI-- 143 (385)
T ss_pred cEEEeCCHHHHHHHHHHHHhCCCC--EEEEc--CCCchhHHHHHHHhhccCcEEEEECCCHHHHHHhcCccCceEEEE--
Confidence 556654444445555555544443 45543 4555553 33455566788887653 233444443 3444443
Q ss_pred eeEe-cCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 531 SSVL-SNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 531 DaIl-aNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
+.+. .+|.++. --.|+-+|+.++++++|
T Consensus 144 e~p~NPtG~v~d---l~~I~~la~~~gi~liv 172 (385)
T PRK08574 144 ETMTNPTLKVID---VPEVAKAAKELGAILVV 172 (385)
T ss_pred ECCCCCCCEecC---HHHHHHHHHHcCCEEEE
Confidence 3332 3455554 23677789999998886
No 100
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=53.45 E-value=1.8e+02 Score=30.60 Aligned_cols=45 Identities=16% Similarity=-0.113 Sum_probs=36.8
Q ss_pred CCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEcce
Q 006577 487 DSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGAS 531 (640)
Q Consensus 487 ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGAD 531 (640)
-|+--.+-.+.++...+.|+++..|||+..+-+-+.+|.+|....
T Consensus 186 ~sG~t~e~i~~a~~ak~~ga~vIaiT~~~~spla~~Ad~~L~~~~ 230 (281)
T COG1737 186 FSGYTREIVEAAELAKERGAKVIAITDSADSPLAKLADIVLLVPV 230 (281)
T ss_pred CCCCcHHHHHHHHHHHHCCCcEEEEcCCCCCchhhhhceEEeccC
Confidence 344345666777899999999999999999999999999988743
No 101
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=52.98 E-value=62 Score=33.31 Aligned_cols=93 Identities=15% Similarity=0.111 Sum_probs=58.9
Q ss_pred EEEeecCc-HHHHHHHHHHHHcCCeeEEEEcCCCCCch---HHHHHHHHHhCCCceE-EEechHHHHHhhhccEEEEcce
Q 006577 457 VLLTYGSS-SAVEMILQHAHELGKQFRVVIVDSRPKHE---GKLLLRRLVRKGLSCT-YTHINAISYIIHEVTRVFLGAS 531 (640)
Q Consensus 457 vILT~g~S-stV~~vL~~A~e~Gk~f~ViV~ESRP~~e---G~~La~eL~~~GI~vT-lI~DsAv~~iM~~VdkVlvGAD 531 (640)
.|..++.+ ...+.+|..+.+.....+++|=+ .|... ..++..++.. ...+. +..+..+..+|+.+|.|++-
T Consensus 131 ~i~~~~~~~~~~~~~l~~~~~~~p~~~lvvK~-HP~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~Ll~~s~~Vvti-- 206 (269)
T PF05159_consen 131 QIRYHSPSQADFLDMLESFAKENPDAKLVVKP-HPDERGGNKYSYLEELPN-LPNVVIIDDDVNLYELLEQSDAVVTI-- 206 (269)
T ss_pred chhccCCcHhHHHHHHHHHHHHCCCCEEEEEE-CchhhCCCChhHhhhhhc-CCCeEEECCCCCHHHHHHhCCEEEEE--
Confidence 44444442 44677888777665566766544 66322 2233344433 33444 45577889999999999643
Q ss_pred eEecCCCeecccchHHHHHHHhhCCCcEEEecccc
Q 006577 532 SVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAY 566 (640)
Q Consensus 532 aIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~aety 566 (640)
| .++++=|-.+|+||+|+...+
T Consensus 207 ----n---------StvGlEAll~gkpVi~~G~~~ 228 (269)
T PF05159_consen 207 ----N---------STVGLEALLHGKPVIVFGRAF 228 (269)
T ss_pred ----C---------CHHHHHHHHcCCceEEecCcc
Confidence 3 246677888999999997664
No 102
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=52.45 E-value=46 Score=30.13 Aligned_cols=88 Identities=16% Similarity=0.257 Sum_probs=53.2
Q ss_pred EEEeecCc--HHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEec---------hHHHHHhh--hc
Q 006577 457 VLLTYGSS--SAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI---------NAISYIIH--EV 523 (640)
Q Consensus 457 vILT~g~S--stV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D---------sAv~~iM~--~V 523 (640)
++++++.. .-+..+++..++ ..|++|.++. .++.|.+.||+|+.+.. ..+--+++ ++
T Consensus 3 vlisv~~~dk~~~~~~a~~l~~--~G~~i~aT~g--------Ta~~L~~~gi~~~~v~~~~~~~~~~~~~i~~~i~~~~i 72 (116)
T cd01423 3 ILISIGSYSKPELLPTAQKLSK--LGYKLYATEG--------TADFLLENGIPVTPVAWPSEEPQNDKPSLRELLAEGKI 72 (116)
T ss_pred EEEecCcccchhHHHHHHHHHH--CCCEEEEccH--------HHHHHHHcCCCceEeeeccCCCCCCchhHHHHHHcCCc
Confidence 34444433 234445555554 4588887642 56788899999988732 22333333 79
Q ss_pred cEEEE----cceeEecCCCeecccchHHHHHHHhhCCCcEEEe
Q 006577 524 TRVFL----GASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (640)
Q Consensus 524 dkVlv----GADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~ 562 (640)
|.||- |.+....+| |.+=-.|-.++||++-.
T Consensus 73 dlVIn~~~~~~~~~~~~~--------~~iRr~Av~~~ip~iT~ 107 (116)
T cd01423 73 DLVINLPSNRGKRVLDND--------YVMRRAADDFAVPLITN 107 (116)
T ss_pred eEEEECCCCCCCccccCc--------EeeehhhHhhCCccccc
Confidence 99987 444334445 34445788999999743
No 103
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=52.00 E-value=2.5e+02 Score=30.25 Aligned_cols=101 Identities=14% Similarity=0.204 Sum_probs=50.6
Q ss_pred CCEEEeecCcHHHHHHHHHHHH--cCCeeEEEEcCCCCCchHHHHH--HHHHhCCCceEEEech--------HHHHHhh-
Q 006577 455 GDVLLTYGSSSAVEMILQHAHE--LGKQFRVVIVDSRPKHEGKLLL--RRLVRKGLSCTYTHIN--------AISYIIH- 521 (640)
Q Consensus 455 gdvILT~g~SstV~~vL~~A~e--~Gk~f~ViV~ESRP~~eG~~La--~eL~~~GI~vTlI~Ds--------Av~~iM~- 521 (640)
.++|+|-|.+..+..++..... .+..-+|++.+ |.+.+.... ..+...|+.+.++... .+...+.
T Consensus 79 ~~i~~t~g~t~~l~~~~~~~~~~~~~~gd~Vl~~~--~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~l~~~i~~ 156 (398)
T TIGR03392 79 ENIVWTRGTTESINLVAQSYARPRLQPGDEIIVSE--AEHHANLIPWLMVAQQTGAKVVKLPIGADLLPDIRQLPELLTP 156 (398)
T ss_pred CeEEEeCChHHHHHHHHHHhhhccCCCCCEEEECC--cchhHHHHHHHHHHHHcCcEEEEEecCCCCCcCHHHHHHHhcc
Confidence 4567776666665555544321 11223566654 444343222 2335578888777521 2222232
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 522 ~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
+...|++ ++.=...|.+.. --.|+-+|+.+|+.++|
T Consensus 157 ~t~lv~i-~~~~n~tG~~~~---~~~i~~~~~~~~~~~iv 192 (398)
T TIGR03392 157 RTRILAL-GQMSNVTGGCPD---LARAITLAHQYGAVVVV 192 (398)
T ss_pred CceEEEE-ECccccccccCC---HHHHHHHHHHcCCEEEE
Confidence 3333433 222223444432 23467788999988776
No 104
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=51.95 E-value=1.1e+02 Score=34.26 Aligned_cols=98 Identities=18% Similarity=0.276 Sum_probs=56.9
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHH-HH-HHHHhCCCceEEEech---HHHHHhh-hccEEEEc
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKL-LL-RRLVRKGLSCTYTHIN---AISYIIH-EVTRVFLG 529 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~-La-~eL~~~GI~vTlI~Ds---Av~~iM~-~VdkVlvG 529 (640)
+.|+|-+-+..+..+|....+.|. +|++.+ +.+.|.. +. ..+...|+++.++... .+-..+. ++..|++-
T Consensus 81 ~al~~~sG~~Ai~~al~~ll~~GD--~Vlv~~--~~y~~t~~~~~~~~~~~Gv~v~~vd~~d~e~l~~ai~~~tklV~l~ 156 (431)
T PRK08248 81 GALAVSSGQAAITYSILNIASAGD--EIVSSS--SLYGGTYNLFAHTLPKLGITVKFVDPSDPENFEAAITDKTKALFAE 156 (431)
T ss_pred cEEEECCHHHHHHHHHHHHhCCCC--EEEEcc--CchhhHHHHHHHHHHhCCEEEEEECCCCHHHHHHhcCCCCeEEEEE
Confidence 567776666666666666554443 566654 5554532 33 4567789998887532 3333343 45555542
Q ss_pred ceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 530 ADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
.---..|.++.- ..|+-+|+.++++|+|
T Consensus 157 -sp~NPtG~v~di---~~I~~la~~~gi~vIv 184 (431)
T PRK08248 157 -TIGNPKGDVLDI---EAVAAIAHEHGIPLIV 184 (431)
T ss_pred -CCCCCCCcccCH---HHHHHHHHHcCCEEEE
Confidence 111223544442 3677788999998876
No 105
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=51.80 E-value=3.1e+02 Score=29.08 Aligned_cols=63 Identities=11% Similarity=0.209 Sum_probs=38.7
Q ss_pred HHHHHHhCCCceEEEechHHHH----HhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEecccc
Q 006577 497 LLRRLVRKGLSCTYTHINAISY----IIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAY 566 (640)
Q Consensus 497 La~eL~~~GI~vTlI~DsAv~~----iM~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~aety 566 (640)
+...|...|+++.++.+....+ .+.+=|.||+ |...| ..--+..++-.||+.|+|+++++...
T Consensus 65 ~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~I~----iS~sG---~t~~~~~~~~~ak~~g~~vi~iT~~~ 131 (326)
T PRK10892 65 MAATFASTGTPSFFVHPGEAAHGDLGMVTPQDVVIA----ISNSG---ESSEILALIPVLKRLHVPLICITGRP 131 (326)
T ss_pred HHHHHhcCCceeEEeChHHhhccccccCCCCCEEEE----EeCCC---CCHHHHHHHHHHHHCCCcEEEEECCC
Confidence 3455666788887765543332 2334455443 33445 33445667778999999999987653
No 106
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=51.71 E-value=1e+02 Score=35.74 Aligned_cols=115 Identities=21% Similarity=0.353 Sum_probs=77.5
Q ss_pred chHHHHHHHHHHHHHHHhcCCcccc-HHHHHHHHHHHHHhc--------------------CCCCCHHHHHHHHHHHHHH
Q 006577 373 LSRDLTAKISSYVSFLIDCRPLSVS-MGNAIRFLKSQIAKI--------------------PISLSESEAKATLHSDIER 431 (640)
Q Consensus 373 ~srdL~~~L~~~i~~L~~aRPtsvs-m~NAIr~lk~~I~~l--------------------~~~~~~~eaK~~L~e~Id~ 431 (640)
..++|.+.|..+-+...+.+|.|++ ++|+.+-+...++.. +...+.+|+.+...++-+.
T Consensus 206 ~~~~ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~r~i~pDlvtDQTSaHdp~~GY~P~g~t~ee~~~lr~~dp~~ 285 (545)
T TIGR01228 206 QTDSLDEALARAEEAKAEGKPISIGLLGNAAEVLPELLKRGVVPDVVTDQTSAHDPLNGYIPEGYTVEDADKLRQEEPEA 285 (545)
T ss_pred EcCCHHHHHHHHHHHHHcCCceEEEeeccHHHHHHHHHHcCCCCCCcCCCCcccCcccccCCCCCCHHHHHHHHHhCHHH
Confidence 4557777888888888889999987 899988777766541 1234688999988888888
Q ss_pred HHHHHHHHHHHHHHHHHH---HhccCCCEEEeecCcHH-----------------HHHHHHHHHHcCC-eeEEEEcCCCC
Q 006577 432 FINEKIILADRVIVKHAV---TKIRDGDVLLTYGSSSA-----------------VEMILQHAHELGK-QFRVVIVDSRP 490 (640)
Q Consensus 432 fi~E~i~~A~~~Ia~~a~---~~I~dgdvILT~g~Sst-----------------V~~vL~~A~e~Gk-~f~ViV~ESRP 490 (640)
|.+ .+.+.|.+|.. ++-..|..+.-|||+-. |..+|+-.+..|+ .||=+|+-..|
T Consensus 286 ~~~----~~~~Sm~rhv~Am~~~~~~Ga~~fDYGN~~r~~a~~aG~~~aF~~PgfV~~~irplF~~G~GPFRWvaLSGdp 361 (545)
T TIGR01228 286 YVK----AAKQSMAKHVRAMLAFQKQGSVTFDYGNNIRQVAKEEGVEDAFDFPGFVPAYIRPLFCRGKGPFRWVALSGDP 361 (545)
T ss_pred HHH----HHHHHHHHHHHHHHHHHHCCCeeeeccHHHHHHHHHcCccccCCCCCchhhhcchhhhCcCCCceeEecCCCH
Confidence 864 35666776654 44456888888887632 4444444444444 35555555555
Q ss_pred C
Q 006577 491 K 491 (640)
Q Consensus 491 ~ 491 (640)
.
T Consensus 362 e 362 (545)
T TIGR01228 362 A 362 (545)
T ss_pred H
Confidence 3
No 107
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=51.67 E-value=2.4e+02 Score=29.73 Aligned_cols=100 Identities=18% Similarity=0.168 Sum_probs=51.5
Q ss_pred CCEEEeecCcHHHHHHHHHHHHc--CCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEec--------hHHHHHhhhcc
Q 006577 455 GDVLLTYGSSSAVEMILQHAHEL--GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--------NAISYIIHEVT 524 (640)
Q Consensus 455 gdvILT~g~SstV~~vL~~A~e~--Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D--------sAv~~iM~~Vd 524 (640)
...++|-|.+.....++..+... ++.-+|++.+.. +.. +.+.+...|+.+..+.. ..+-..+.+-+
T Consensus 77 ~~~~~~~ggt~a~~~a~~~~~~~~~~~~~~vl~~~~~--h~s--~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~ 152 (371)
T PRK13520 77 AYGYITSGGTEANIQAVRAARNLAKAEKPNIVVPESA--HFS--FDKAADMLGVELRRAPLDDDYRVDVKAVEDLIDDNT 152 (371)
T ss_pred CCeEEecCcHHHHHHHHHHHHhhccCCCceEEecCcc--hHH--HHHHHHHcCceEEEecCCCCCcCCHHHHHHHHhhCC
Confidence 34577666555555555555442 123467776632 211 22333445888777652 12222332223
Q ss_pred EEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 525 RVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 525 kVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
..++....-...|.+.. --.|+-+|++|++.|+|
T Consensus 153 ~~vi~~~~~~~tG~~~~---l~~I~~l~~~~g~~liv 186 (371)
T PRK13520 153 IGIVGIAGTTELGQVDP---IPELSKIALENGIFLHV 186 (371)
T ss_pred EEEEEEcCCcCCcccCC---HHHHHHHHHHcCCCEEE
Confidence 33332222234454433 34577789999998887
No 108
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=51.59 E-value=62 Score=37.89 Aligned_cols=89 Identities=20% Similarity=0.195 Sum_probs=58.6
Q ss_pred CeeEEEEcCCCCCchHHHHHHHHHhCCCceEEE----ec-hHHHHHhh--hccEEEEcceeEe-cCCC----------ee
Q 006577 479 KQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT----HI-NAISYIIH--EVTRVFLGASSVL-SNGT----------VC 540 (640)
Q Consensus 479 k~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI----~D-sAv~~iM~--~VdkVlvGADaIl-aNG~----------Vv 540 (640)
...+|+|+-. -.+=|+.|++.|.+.|+++++. +| ..+...+. +.|.||=-|--.. .+-+ -+
T Consensus 379 ~~mkiLVtGa-~G~iG~~l~~~L~~~g~~v~~~~~~l~d~~~v~~~i~~~~pd~Vih~Aa~~~~~~~~~~~~~~~~~~~~ 457 (668)
T PLN02260 379 PSLKFLIYGR-TGWIGGLLGKLCEKQGIAYEYGKGRLEDRSSLLADIRNVKPTHVFNAAGVTGRPNVDWCESHKVETIRA 457 (668)
T ss_pred CCceEEEECC-CchHHHHHHHHHHhCCCeEEeeccccccHHHHHHHHHhhCCCEEEECCcccCCCCCChHHhCHHHHHHH
Confidence 3456666543 3567888999998888888543 22 23444555 5788886663221 0111 27
Q ss_pred cccchHHHHHHHhhCCCcEEEecccccc
Q 006577 541 SRVGTACVAMVAYGFHIPVLVCCEAYKF 568 (640)
Q Consensus 541 NKiGT~~lAlaAk~~~VPVyV~aetyKf 568 (640)
|-.||..++-+|+.+++++++++-.+=|
T Consensus 458 N~~gt~~l~~a~~~~g~~~v~~Ss~~v~ 485 (668)
T PLN02260 458 NVVGTLTLADVCRENGLLMMNFATGCIF 485 (668)
T ss_pred HhHHHHHHHHHHHHcCCeEEEEccccee
Confidence 8999999999999999998877544433
No 109
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=51.28 E-value=4e+02 Score=29.91 Aligned_cols=94 Identities=17% Similarity=0.135 Sum_probs=54.8
Q ss_pred CCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHh--CCCceEEEechHHHHHhh-----hccEE
Q 006577 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVR--KGLSCTYTHINAISYIIH-----EVTRV 526 (640)
Q Consensus 454 dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~--~GI~vTlI~DsAv~~iM~-----~VdkV 526 (640)
.|.++..++.+..+..+-+-+.+.|-...++++......--.++...|.+ .+.++.++.+.-..-+.. +.|.+
T Consensus 302 ~gkrv~i~g~~~~~~~la~~L~elGm~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~d~~e~~~~i~~~~pDli 381 (435)
T cd01974 302 HGKKFALYGDPDFLIGLTSFLLELGMEPVHVLTGNGGKRFEKEMQALLDASPYGAGAKVYPGKDLWHLRSLLFTEPVDLL 381 (435)
T ss_pred CCCEEEEEcChHHHHHHHHHHHHCCCEEEEEEeCCCCHHHHHHHHHHHhhcCCCCCcEEEECCCHHHHHHHHhhcCCCEE
Confidence 57888888988887776666667787775566544333222333344444 233444444433333332 24443
Q ss_pred EEcceeEecCCCeecccchHHHHHHHhhCCCcEEEec
Q 006577 527 FLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (640)
Q Consensus 527 lvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~a 563 (640)
+|+..-..+|+..+||++.++
T Consensus 382 ----------------iG~s~~~~~a~~~gip~v~~~ 402 (435)
T cd01974 382 ----------------IGNTYGKYIARDTDIPLVRFG 402 (435)
T ss_pred ----------------EECccHHHHHHHhCCCEEEee
Confidence 233344578999999998765
No 110
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=50.85 E-value=97 Score=36.08 Aligned_cols=115 Identities=22% Similarity=0.319 Sum_probs=75.8
Q ss_pred chHHHHHHHHHHHHHHHhcCCcccc-HHHHHHHHHHHHHhc--------------------CCCCCHHHHHHHHHHHHHH
Q 006577 373 LSRDLTAKISSYVSFLIDCRPLSVS-MGNAIRFLKSQIAKI--------------------PISLSESEAKATLHSDIER 431 (640)
Q Consensus 373 ~srdL~~~L~~~i~~L~~aRPtsvs-m~NAIr~lk~~I~~l--------------------~~~~~~~eaK~~L~e~Id~ 431 (640)
...+|.+.|+.+-++..+-+|.|++ ++|+.+.+...++.. +..++.+|+++...++-+.
T Consensus 205 ~~~~ldea~~~~~ea~~~~~~~SIg~~GN~ad~~~~l~~~~i~pDl~tDQTS~Hdp~~GY~P~g~t~eea~~l~~~dp~~ 284 (546)
T PF01175_consen 205 VTDDLDEALARAKEARAKKEPLSIGLLGNAADLWEELVERGIIPDLVTDQTSAHDPLNGYYPAGLTFEEANELRAEDPEE 284 (546)
T ss_dssp EESSHHHHHHHHHHHHHTT--EEEEEES-HHHHHHHHHHTT---SEE---SSTT-TTTS---TT--HHHHHHHHHHSHHH
T ss_pred EcCCHHHHHHHHHHhhccCCeeEEEEeccHHHHHHHHHHcCCCCCcccCCCccccccccCCCCCCCHHHHHHHHhhCHHH
Confidence 4456788888888888899999987 899988777666541 1234688999998888888
Q ss_pred HHHHHHHHHHHHHHHHHH---HhccCCCEEEeecCcHH-----------------HHHHHHHHHHcCCe-eEEEEcCCCC
Q 006577 432 FINEKIILADRVIVKHAV---TKIRDGDVLLTYGSSSA-----------------VEMILQHAHELGKQ-FRVVIVDSRP 490 (640)
Q Consensus 432 fi~E~i~~A~~~Ia~~a~---~~I~dgdvILT~g~Sst-----------------V~~vL~~A~e~Gk~-f~ViV~ESRP 490 (640)
|.+ .+.+.|.+|.. ++-..|..+.=|||+-. |..+|+-.+..|+. ||=+|+-..|
T Consensus 285 ~~~----~v~~Sl~rhv~Am~~~~~~G~~~fDYGN~~r~~a~~aG~~~aF~~P~fV~~~irplF~~G~GPFRWv~lSGdp 360 (546)
T PF01175_consen 285 FKE----RVQESLARHVEAMLELQDRGAYFFDYGNNFRLEAFDAGVDEAFDYPSFVPAYIRPLFCEGFGPFRWVCLSGDP 360 (546)
T ss_dssp HHH----HHHHHHHHHHHHHHHHHHTT-EE-B-SSSHHHHHHHTT-TTGGGS-BHHHHTTHHHHTTT-EEEEEEETT--H
T ss_pred HHH----HHHHHHHHHHHHHHHHHHCCCEEEecCchHHHHHHHcCcceeecccccHHHHhhHHhhcCCCCceeeecCCCH
Confidence 864 35666666653 44457888888998742 67778877877874 8888887777
Q ss_pred C
Q 006577 491 K 491 (640)
Q Consensus 491 ~ 491 (640)
.
T Consensus 361 e 361 (546)
T PF01175_consen 361 E 361 (546)
T ss_dssp H
T ss_pred H
Confidence 4
No 111
>PRK05958 8-amino-7-oxononanoate synthase; Reviewed
Probab=50.77 E-value=3.3e+02 Score=28.77 Aligned_cols=100 Identities=17% Similarity=0.101 Sum_probs=47.6
Q ss_pred ccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEe--c-hHHHHHhhh---ccE
Q 006577 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH--I-NAISYIIHE---VTR 525 (640)
Q Consensus 452 I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~--D-sAv~~iM~~---Vdk 525 (640)
+...+.|++.+.+.....++....+.| -.|++. .|.+.....+.. ..|.++..+. | ..+-.++.. ..+
T Consensus 97 ~~~~~~i~~~~g~~~~~~~l~~~~~~g--d~V~~~--~~~~~~~~~~~~--~~g~~~~~~~~~d~~~l~~~i~~~~~~~~ 170 (385)
T PRK05958 97 FGAERALLFSSGYAANLAVLTALAGKG--DLIVSD--KLNHASLIDGAR--LSRARVRRYPHNDVDALEALLAKWRAGRA 170 (385)
T ss_pred hCCCcEEEECcHHHHHHHHHHHhCCCC--CEEEEe--CccCHHHHHHHH--hcCCceEEeCCCCHHHHHHHHHhccCCCe
Confidence 333456666544444444443333333 345543 355544333333 3576666553 2 344444443 233
Q ss_pred EEEcceeEec-CCCeecccchHHHHHHHhhCCCcEEE
Q 006577 526 VFLGASSVLS-NGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 526 VlvGADaIla-NG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
+++ ...+.. .|.+.. -..|+-+|+.|++.+++
T Consensus 171 lvi-~~~~~~~~G~~~~---l~~i~~ia~~~~~~li~ 203 (385)
T PRK05958 171 LIV-TESVFSMDGDLAP---LAELVALARRHGAWLLV 203 (385)
T ss_pred EEE-EEecccCCCCcCC---HHHHHHHHHHhCCEEEE
Confidence 333 222322 222211 34677889999998775
No 112
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=50.76 E-value=1.4e+02 Score=27.15 Aligned_cols=35 Identities=14% Similarity=0.265 Sum_probs=26.9
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEe
Q 006577 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (640)
Q Consensus 522 ~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~ 562 (640)
++|++++|.+. + ...+.| ....-+.++-++||+|+
T Consensus 103 ~~DLIV~Gs~~----~-~~~~lg-Sva~~v~~~a~~pVLvv 137 (144)
T PRK15118 103 DMDLVVCGHHQ----D-FWSKLM-SSARQLINTVHVDMLIV 137 (144)
T ss_pred CCCEEEEeCcc----c-HHHHHH-HHHHHHHhhCCCCEEEe
Confidence 79999999985 2 344577 44556788889999997
No 113
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=50.72 E-value=53 Score=35.31 Aligned_cols=96 Identities=19% Similarity=0.211 Sum_probs=62.9
Q ss_pred EEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhc--cEEEEcceeEec
Q 006577 458 LLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEV--TRVFLGASSVLS 535 (640)
Q Consensus 458 ILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~V--dkVlvGADaIla 535 (640)
||..|.++-+-.-|+.+.. ..+.|+.+..+.. -+.-...+..++.+. |.||=.|--..-
T Consensus 3 iLi~G~~GqLG~~L~~~l~--~~~~v~a~~~~~~-----------------Ditd~~~v~~~i~~~~PDvVIn~AAyt~v 63 (281)
T COG1091 3 ILITGANGQLGTELRRALP--GEFEVIATDRAEL-----------------DITDPDAVLEVIRETRPDVVINAAAYTAV 63 (281)
T ss_pred EEEEcCCChHHHHHHHHhC--CCceEEeccCccc-----------------cccChHHHHHHHHhhCCCEEEECcccccc
Confidence 7888888887777776653 5678887765551 112222333344422 444444322222
Q ss_pred CC--------CeecccchHHHHHHHhhCCCcEEEecccccccccc
Q 006577 536 NG--------TVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERV 572 (640)
Q Consensus 536 NG--------~VvNKiGT~~lAlaAk~~~VPVyV~aetyKf~~~~ 572 (640)
|+ ..+|-.|+..+|.+|++.|.+++-++--|=|+-.-
T Consensus 64 D~aE~~~e~A~~vNa~~~~~lA~aa~~~ga~lVhiSTDyVFDG~~ 108 (281)
T COG1091 64 DKAESEPELAFAVNATGAENLARAAAEVGARLVHISTDYVFDGEK 108 (281)
T ss_pred ccccCCHHHHHHhHHHHHHHHHHHHHHhCCeEEEeecceEecCCC
Confidence 22 24899999999999999999999999888887643
No 114
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=50.51 E-value=1.8e+02 Score=31.76 Aligned_cols=97 Identities=19% Similarity=0.229 Sum_probs=50.9
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHH-HHH-HHHHhCCCceEEEechHHHH---Hhh-hccEEEEc
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLL-RRLVRKGLSCTYTHINAISY---IIH-EVTRVFLG 529 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~-~La-~eL~~~GI~vTlI~DsAv~~---iM~-~VdkVlvG 529 (640)
+.+++-+-+..+..+|....+.|. +|++. ++.+.+. .+. ..+...|+.++++....... .+. +...|++-
T Consensus 71 ~~~~~~sG~~Ai~~al~al~~~Gd--~Vl~~--~~~~~~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~~tklV~le 146 (380)
T TIGR01325 71 RAVATATGMSAIQAALMTLLQAGD--HVVAS--RSLFGSTVGFISEILPRFGIEVSFVDPTDLNAWEAAVKPNTKLVFVE 146 (380)
T ss_pred cEEEECCHHHHHHHHHHHHhCCCC--EEEEe--cCCcchHHHHHHHHHHHhCCEEEEECCCCHHHHHHhcCCCceEEEEE
Confidence 455554444455555554444454 45553 4444443 333 45677899998886432222 222 33344431
Q ss_pred ceeE-ecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 530 ASSV-LSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 530 ADaI-laNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
.. -..|.+.. --.++-+|+.+|++|+|
T Consensus 147 --~p~np~g~~~d---l~~I~~la~~~gi~liv 174 (380)
T TIGR01325 147 --TPSNPLGELVD---IAALAELAHAIGALLVV 174 (380)
T ss_pred --CCCCCCCeeeC---HHHHHHHHHHcCCEEEE
Confidence 11 12233332 24566778999998886
No 115
>TIGR01979 sufS cysteine desulfurases, SufS subfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.
Probab=50.51 E-value=3.5e+02 Score=29.08 Aligned_cols=102 Identities=18% Similarity=0.264 Sum_probs=48.1
Q ss_pred CCEEEeecCcHHHHHHHHHHHH--cCCeeEEEEcCCCCCchHHHHH-HHH-HhCCCceEEEec--------hHHHHHhh-
Q 006577 455 GDVLLTYGSSSAVEMILQHAHE--LGKQFRVVIVDSRPKHEGKLLL-RRL-VRKGLSCTYTHI--------NAISYIIH- 521 (640)
Q Consensus 455 gdvILT~g~SstV~~vL~~A~e--~Gk~f~ViV~ESRP~~eG~~La-~eL-~~~GI~vTlI~D--------sAv~~iM~- 521 (640)
.++++|.|.+..+..++..... .+..-+|++.+.. +.+.... +.+ ...|+.+.++.. ..+-..+.
T Consensus 81 ~~v~~~~g~t~~l~~~~~~~~~~~~~~g~~vl~~~~~--~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~i~~ 158 (403)
T TIGR01979 81 EEIVFTRGTTESINLVAYSWGDSNLKAGDEIVISEME--HHANIVPWQLLAERTGATLKFIPLDDDGTLDLDDLEKLLTE 158 (403)
T ss_pred CeEEEeCCHHHHHHHHHHHhhhhcCCCCCEEEECcch--hhHHHHHHHHHHHhcCcEEEEEecCCCCCCCHHHHHHHhcc
Confidence 3577775555544444433211 1233466666432 2222222 223 356888776642 11211222
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEe
Q 006577 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (640)
Q Consensus 522 ~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~ 562 (640)
+...|++. ..-...|.+.. ...|+-+|++|+++++|=
T Consensus 159 ~~~lv~~~-~~~~~tG~~~~---~~~i~~~~~~~~~~~ivD 195 (403)
T TIGR01979 159 KTKLVAIT-HVSNVLGTVNP---VEEIAKLAHQVGAKVLVD 195 (403)
T ss_pred CCeEEEEE-cccccccccCC---HHHHHHHHHHcCCEEEEE
Confidence 33334332 22223344443 345777889999988773
No 116
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=50.47 E-value=3.7e+02 Score=29.28 Aligned_cols=106 Identities=16% Similarity=0.205 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHhccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEech-HHHH
Q 006577 440 ADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN-AISY 518 (640)
Q Consensus 440 A~~~Ia~~a~~~I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds-Av~~ 518 (640)
+.+.+.+ ....+. |..|+.++.......+.+-+.+.|....++++......+=.++-+.|.+....+..-.|. .+..
T Consensus 258 ~~~~l~~-~~~~l~-g~~v~i~~~~~~~~~l~~~L~elG~~v~~v~~~~~~~~~~e~~~~~~~~~~~~v~~~~~~~~~~~ 335 (398)
T PF00148_consen 258 AEDALAD-YRERLG-GKRVAIYGDPDRALGLARFLEELGMEVVAVGCDDKSPEDEERLRWLLEESDPEVIIDPDPEEIEE 335 (398)
T ss_dssp HHHHHHH-HHHHHT-T-EEEEESSHHHHHHHHHHHHHTT-EEEEEEESSGGHHHHHHHHHHHHTTCSEEEESCBHHHHHH
T ss_pred HHHHHHh-hHHhhc-CceEEEEcCchhHHHHHHHHHHcCCeEEEEEEccCchhHHHHHHHHhhCCCcEEEeCCCHHHHHH
Confidence 3444444 334444 778888999887777777777778766655555543322233344444442222222222 3444
Q ss_pred Hhhh--ccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEec
Q 006577 519 IIHE--VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (640)
Q Consensus 519 iM~~--VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~a 563 (640)
++++ .|.+| |+..-..+|+..++|++.++
T Consensus 336 ~l~~~~pdl~i----------------g~~~~~~~a~~~~~~~~~~~ 366 (398)
T PF00148_consen 336 LLEELKPDLLI----------------GSSHERYLAKKLGIPLIRIG 366 (398)
T ss_dssp HHHHHT-SEEE----------------ESHHHHHHHHHTT--EEE-S
T ss_pred HHHhcCCCEEE----------------echhhHHHHHHhCCCeEEEe
Confidence 4443 66553 33445567888888888754
No 117
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=50.22 E-value=3.1e+02 Score=29.58 Aligned_cols=101 Identities=14% Similarity=0.185 Sum_probs=49.7
Q ss_pred CCEEEeecCcHHHHHHHHHHHH--cCCeeEEEEcCCCCCchHHHHH--HHHHhCCCceEEEech--------HHHHHhh-
Q 006577 455 GDVLLTYGSSSAVEMILQHAHE--LGKQFRVVIVDSRPKHEGKLLL--RRLVRKGLSCTYTHIN--------AISYIIH- 521 (640)
Q Consensus 455 gdvILT~g~SstV~~vL~~A~e--~Gk~f~ViV~ESRP~~eG~~La--~eL~~~GI~vTlI~Ds--------Av~~iM~- 521 (640)
.++++|-|.+..+..++..... -...-+|++.+ |.+.+.... ......|++++++... .+...+.
T Consensus 82 ~~i~~~~~~t~~i~~~~~~~~~~~~~~gd~vl~~~--~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~ 159 (401)
T PRK10874 82 KNIVWTRGTTESINLVAQSYARPRLQPGDEIIVSE--AEHHANLVPWLMVAQQTGAKVVKLPLGADRLPDVDLLPELITP 159 (401)
T ss_pred CEEEEECCHHHHHHHHHHHhhhccCCCcCEEEECC--cchHHHHHHHHHHHHHhCCEEEEEecCCCCcCCHHHHHHhcCc
Confidence 3566665555555555544321 12223667664 444443322 2234568888877521 1222222
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 522 ~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
+...|++ +..-...|.+. -.-.|+-+|+.+|+.|+|
T Consensus 160 ~t~lv~i-~~~~n~tG~~~---~~~~i~~l~~~~g~~~iv 195 (401)
T PRK10874 160 RTRILAL-GQMSNVTGGCP---DLARAITLAHQAGMVVMV 195 (401)
T ss_pred CcEEEEE-eCCcccccCcC---CHHHHHHHHHHcCCEEEE
Confidence 2333333 32223344332 123577789999988776
No 118
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=49.88 E-value=51 Score=31.21 Aligned_cols=69 Identities=19% Similarity=0.104 Sum_probs=44.7
Q ss_pred CCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCC
Q 006577 478 GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHI 557 (640)
Q Consensus 478 Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~V 557 (640)
|...++--.+..+...|...+.-|...|++|.++. +|.|+++ |.....--...++-.|+++++
T Consensus 23 ~~~~~~~~~~~~~GG~~~n~a~~l~~LG~~~~~~~----------~~~v~i~-------~~~~~~~~~~~~~~~~~~~~~ 85 (196)
T cd00287 23 GGLVRPGDTEERAGGGAANVAVALARLGVSVTLVG----------ADAVVIS-------GLSPAPEAVLDALEEARRRGV 85 (196)
T ss_pred CCeEEeceeeecCCCcHHHHHHHHHHCCCcEEEEE----------ccEEEEe-------cccCcHHHHHHHHHHHHHcCC
Confidence 33344444456677788899999999999999998 4444444 433221223345557888999
Q ss_pred cEEEec
Q 006577 558 PVLVCC 563 (640)
Q Consensus 558 PVyV~a 563 (640)
|+++=.
T Consensus 86 ~v~~D~ 91 (196)
T cd00287 86 PVVLDP 91 (196)
T ss_pred eEEEeC
Confidence 987643
No 119
>PLN02778 3,5-epimerase/4-reductase
Probab=49.68 E-value=77 Score=33.28 Aligned_cols=26 Identities=19% Similarity=0.102 Sum_probs=21.9
Q ss_pred ecccchHHHHHHHhhCCCcEEEeccc
Q 006577 540 CSRVGTACVAMVAYGFHIPVLVCCEA 565 (640)
Q Consensus 540 vNKiGT~~lAlaAk~~~VPVyV~aet 565 (640)
.|-.||..++-+|+.+++.+++..-.
T Consensus 86 ~Nv~gt~~ll~aa~~~gv~~v~~sS~ 111 (298)
T PLN02778 86 ANVVGTLTLADVCRERGLVLTNYATG 111 (298)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEecc
Confidence 67889999999999999998776433
No 120
>PF02595 Gly_kinase: Glycerate kinase family; InterPro: IPR004381 This family includes glycerate kinase 2 (2.7.1.31 from EC), which catalyses the phosphorylation of (R)-glycerate to 3-phospho-(R)-glycerate in the presence of ATP. These proteins consist of two different alpha/beta domains: domain 1 has a flavodoxin-like fold, while domain 2 has a restriction enzyme-like fold (domain 2 is inserted into domain 1).; GO: 0008887 glycerate kinase activity, 0031388 organic acid phosphorylation; PDB: 3CWC_B 1TO6_A.
Probab=49.32 E-value=10 Score=42.18 Aligned_cols=52 Identities=13% Similarity=0.204 Sum_probs=32.0
Q ss_pred HHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEeccccccc
Q 006577 516 ISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFH 569 (640)
Q Consensus 516 v~~iM~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~aetyKf~ 569 (640)
+-..+..+|+||.|-=++ |.....--....||-+|+.|+|||+++|.....+
T Consensus 278 l~~~l~~aDlVITGEG~~--D~Qtl~GK~p~~Va~~A~~~~vPviav~G~~~~~ 329 (377)
T PF02595_consen 278 LEERLEDADLVITGEGRL--DAQTLAGKVPGGVARLAKKHGVPVIAVAGSVDLD 329 (377)
T ss_dssp HHHHCCC-SEEEE--CEC--STTTTTTCHHHHHHCCHCCTT--EEEEECEC-TT
T ss_pred HHHHhcCCCEEEECcccc--ccccCCCcHHHHHHHHHHHcCCcEEEEeCCCCCC
Confidence 445677899999998664 2222233345667888999999999999986443
No 121
>PLN02656 tyrosine transaminase
Probab=49.32 E-value=2.1e+02 Score=31.25 Aligned_cols=97 Identities=21% Similarity=0.313 Sum_probs=51.4
Q ss_pred ccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEec---h-------HHHHHhh
Q 006577 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI---N-------AISYIIH 521 (640)
Q Consensus 452 I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D---s-------Av~~iM~ 521 (640)
+....+++|.|.+..+..++....+.|. +|++. .|.+.+...+..+ .|+.+.++.. . .+...+.
T Consensus 94 ~~~~~i~~t~G~~~al~~~~~~l~~~gd--~Vlv~--~p~y~~~~~~~~~--~g~~~~~i~~~~~~~~~~d~~~l~~~~~ 167 (409)
T PLN02656 94 LSLDDVFITSGCTQAIDVALSMLARPGA--NILLP--RPGFPIYELCAAF--RHLEVRYVDLLPEKGWEVDLDAVEALAD 167 (409)
T ss_pred CCcccEEEeCChHHHHHHHHHHHhCCCC--eEEEe--CCCCCcHHHHHHH--cCCEEEEEeCCCcCCCCCCHHHHHHHhc
Confidence 4455788888877776655555444443 45554 4555554444333 5777666642 1 1122222
Q ss_pred hccEEEEcceeEecCCCeecccchH-------HHHHHHhhCCCcEEE
Q 006577 522 EVTRVFLGASSVLSNGTVCSRVGTA-------CVAMVAYGFHIPVLV 561 (640)
Q Consensus 522 ~VdkVlvGADaIlaNG~VvNKiGT~-------~lAlaAk~~~VPVyV 561 (640)
.-+++++ +.|- -|.+|+. .++-+|+.|++++++
T Consensus 168 ~~~~~v~-----l~~P--~NPtG~~~s~~~~~~i~~~a~~~~~~ii~ 207 (409)
T PLN02656 168 QNTVALV-----IINP--GNPCGNVYSYQHLKKIAETAEKLKILVIA 207 (409)
T ss_pred cCceEEE-----EECC--CCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 2122222 2222 3566644 456678899988775
No 122
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=49.23 E-value=1.8e+02 Score=31.67 Aligned_cols=15 Identities=47% Similarity=0.569 Sum_probs=11.4
Q ss_pred HHHHHHhhCCCcEEE
Q 006577 547 CVAMVAYGFHIPVLV 561 (640)
Q Consensus 547 ~lAlaAk~~~VPVyV 561 (640)
.|+-+|++||++|+|
T Consensus 179 ~I~~la~~~g~~liv 193 (387)
T PRK09331 179 KVAKVAHEYGIPFLL 193 (387)
T ss_pred HHHHHHHHcCCEEEE
Confidence 466778888888776
No 123
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=49.22 E-value=2.6e+02 Score=29.56 Aligned_cols=101 Identities=17% Similarity=0.243 Sum_probs=53.1
Q ss_pred CEEEeecCcHHHHHHHHHHHHc-CCeeEEEEcCCCCCchHHHH-HHHHH-hCCCceEEEech--------HHHHHhh-hc
Q 006577 456 DVLLTYGSSSAVEMILQHAHEL-GKQFRVVIVDSRPKHEGKLL-LRRLV-RKGLSCTYTHIN--------AISYIIH-EV 523 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~-Gk~f~ViV~ESRP~~eG~~L-a~eL~-~~GI~vTlI~Ds--------Av~~iM~-~V 523 (640)
.+++|-|.+..+..++..+... ++.-+|++.+ +.+.+... ...+. ..|+.+.+|... .+-..+. ++
T Consensus 63 ~v~~~~g~t~a~~~~~~~l~~~~~~g~~vl~~~--~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~ 140 (373)
T cd06453 63 EIIFTRNTTEAINLVAYGLGRANKPGDEIVTSV--MEHHSNIVPWQQLAERTGAKLKVVPVDDDGQLDLEALEKLLTERT 140 (373)
T ss_pred eEEEeCCHHHHHHHHHHHhhhcCCCCCEEEECc--chhHHHHHHHHHHHhhcCcEEEEeecCCCCCcCHHHHHHHhcCCc
Confidence 5667776666666666665541 1334566654 33334322 23343 578888777522 1222222 34
Q ss_pred cEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEe
Q 006577 524 TRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (640)
Q Consensus 524 dkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~ 562 (640)
+.|++. ..-...|.+.. + -.|+-+|+.|+++++|=
T Consensus 141 ~~v~~~-~~~~~tG~~~~-~--~~i~~~~~~~~~~li~D 175 (373)
T cd06453 141 KLVAVT-HVSNVLGTINP-V--KEIGEIAHEAGVPVLVD 175 (373)
T ss_pred eEEEEe-CcccccCCcCC-H--HHHHHHHHHcCCEEEEE
Confidence 455442 22223454433 2 36777889999988873
No 124
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=49.16 E-value=4.2e+02 Score=29.60 Aligned_cols=95 Identities=17% Similarity=0.234 Sum_probs=54.7
Q ss_pred CCCEEEeecCcHHHHHHHHHHHHcC-CeeEEEEc-CCCCCchHHHHHHHHHhCCCce--E---EEech----HHHHHhh-
Q 006577 454 DGDVLLTYGSSSAVEMILQHAHELG-KQFRVVIV-DSRPKHEGKLLLRRLVRKGLSC--T---YTHIN----AISYIIH- 521 (640)
Q Consensus 454 dgdvILT~g~SstV~~vL~~A~e~G-k~f~ViV~-ESRP~~eG~~La~eL~~~GI~v--T---lI~Ds----Av~~iM~- 521 (640)
.|..++.++....+..++..+.+.| ...-+..+ -..+..++....+++.+.|++. . ++.|+ .+..+++
T Consensus 292 ~Gk~~~i~~~~~~~~~~~~~l~elG~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ 371 (426)
T cd01972 292 KGKKAIVETGAAYGHLLIAVLRELGFGEVPVVLVFHHDPTYDRGDSEKDLLEHGVDPEIDITKYTVSNGQYYQFYNLLKR 371 (426)
T ss_pred CCCEEEEEeCCccHHHHHHHHHHcCCceEEEEEeccCchhhhcchhHHHHhcCCcccccccceeeecCCCHHHHHHHHHH
Confidence 5888888888777777777777878 55443323 2444445444445666767632 2 55665 3444444
Q ss_pred -hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEe
Q 006577 522 -EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (640)
Q Consensus 522 -~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~ 562 (640)
+.|.+|.+... +. ...|+..|+|++-+
T Consensus 372 ~~pDl~i~~~~~-------------~~-~~~~~~~gip~~~~ 399 (426)
T cd01972 372 VKPDFIIFRHGG-------------LF-PDATVYLGIPVVPL 399 (426)
T ss_pred hCCCEEEEcCCC-------------cc-HHHHHhcCCCEEec
Confidence 45665543211 11 12347799999865
No 125
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=48.98 E-value=2.6e+02 Score=28.83 Aligned_cols=46 Identities=17% Similarity=0.015 Sum_probs=34.4
Q ss_pred EEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEc
Q 006577 483 VVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLG 529 (640)
Q Consensus 483 ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvG 529 (640)
+++.-++-..+-.++++.+.+.|+++..|++ .-+.+.+.+|.+|.-
T Consensus 180 I~iS~sG~t~~~~~~~~~ak~~g~~vI~IT~-~~s~l~~~ad~~l~~ 225 (284)
T PRK11302 180 VLISHTGRTKSLVELAQLARENGATVIAITS-AGSPLAREATLALTL 225 (284)
T ss_pred EEEeCCCCCHHHHHHHHHHHHcCCeEEEECC-CCChhHHhCCEEEec
Confidence 3344455455666777899999999999997 456777789998864
No 126
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=48.63 E-value=4.6e+02 Score=29.85 Aligned_cols=150 Identities=11% Similarity=0.124 Sum_probs=78.0
Q ss_pred ccccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEeecCcHHHHHHHHH
Q 006577 394 LSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQH 473 (640)
Q Consensus 394 tsvsm~NAIr~lk~~I~~l~~~~~~~eaK~~L~e~Id~fi~E~i~~A~~~Ia~~a~~~I~dgdvILT~g~SstV~~vL~~ 473 (640)
+-+++.+.-+||....+-.....+ +. +++|+ ....+.|.+....++ .|..+..++-+..+.++-+-
T Consensus 258 ~P~G~~~T~~~l~~ia~~~g~~~~-----e~-------i~~er-~~~~~~~~~~~~~~l-~Gkrv~i~g~~~~~~~l~~f 323 (454)
T cd01973 258 TPIGIKNTDAFLQNIKELTGKPIP-----ES-------LVRER-GIAIDALADLAHMFF-ANKKVAIFGHPDLVIGLAEF 323 (454)
T ss_pred CCcChHHHHHHHHHHHHHHCCCCC-----HH-------HHHHH-HHHHHHHHHHHHHHh-CCCeEEEEcCHHHHHHHHHH
Confidence 346778887777766543322211 11 22222 122333444333333 58888888888777766666
Q ss_pred HHHcCCeeEEEEcCC-CCCchHHHHHHHHHh-CCCceEEEechHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHH
Q 006577 474 AHELGKQFRVVIVDS-RPKHEGKLLLRRLVR-KGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMV 551 (640)
Q Consensus 474 A~e~Gk~f~ViV~ES-RP~~eG~~La~eL~~-~GI~vTlI~DsAv~~iM~~VdkVlvGADaIlaNG~VvNKiGT~~lAla 551 (640)
+.+.|....+.++-+ .+..+.....++|.+ .+..+.++.+.-..-+...+..--.++|-|+.| ..---+
T Consensus 324 l~elGm~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vi~~~d~~e~~~~i~~~~~~~dliig~---------s~~~~~ 394 (454)
T cd01973 324 CLEVEMKPVLLLLGDDNSKYKKDPRIKALKEKADYDMEIVTNADLWELEKRIKNKGLELDLILGH---------SKGRYI 394 (454)
T ss_pred HHHCCCeEEEEEECCCCcccchhHHHHHHHhhcCCCceEEECCCHHHHHHHHHhcCCCCCEEEEC---------CccHHH
Confidence 667788776655554 455556555556632 344444555544443332111100113333322 122357
Q ss_pred HhhCCCcEEEe-cccc
Q 006577 552 AYGFHIPVLVC-CEAY 566 (640)
Q Consensus 552 Ak~~~VPVyV~-aety 566 (640)
|+..+||++.+ .|.|
T Consensus 395 A~~~gip~~~~g~Pv~ 410 (454)
T cd01973 395 AIDNNIPMVRVGFPTF 410 (454)
T ss_pred HHHcCCCEEEecCCee
Confidence 88899999876 3443
No 127
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=48.33 E-value=1.4e+02 Score=32.40 Aligned_cols=97 Identities=23% Similarity=0.272 Sum_probs=52.3
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHH-HH-HHHHhCCCceEEEech---HHHHHhh-hccEEEEc
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKL-LL-RRLVRKGLSCTYTHIN---AISYIIH-EVTRVFLG 529 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~-La-~eL~~~GI~vTlI~Ds---Av~~iM~-~VdkVlvG 529 (640)
+.|++-+-+..+..+|......|. +|++.. +.+.+.. +. ..+...|+.+.++... .+...+. +...|++
T Consensus 57 ~a~~~~sG~~Ai~~~l~~l~~~gd--~Vl~~~--~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~~~v~~- 131 (369)
T cd00614 57 AALAFSSGMAAISTVLLALLKAGD--HVVASD--DLYGGTYRLFERLLPKLGIEVTFVDPDDPEALEAAIKPETKLVYV- 131 (369)
T ss_pred CEEEEcCHHHHHHHHHHHHcCCCC--EEEECC--CCcchHHHHHHHHHhhcCeEEEEeCCCCHHHHHHhcCCCCeEEEE-
Confidence 556664444555555555544443 455443 4555533 23 3455779988887543 3333343 3444443
Q ss_pred ceeEec-CCCeecccchHHHHHHHhhCCCcEEE
Q 006577 530 ASSVLS-NGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 530 ADaIla-NG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
+.+.. .|.+.. --.|+-+|+.||++++|
T Consensus 132 -e~~~np~g~~~d---l~~i~~la~~~g~~liv 160 (369)
T cd00614 132 -ESPTNPTLKVVD---IEAIAELAHEHGALLVV 160 (369)
T ss_pred -ECCCCCCCeecC---HHHHHHHHHHcCCEEEE
Confidence 23322 333332 23577788999998887
No 128
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=47.96 E-value=1.2e+02 Score=32.96 Aligned_cols=97 Identities=10% Similarity=0.106 Sum_probs=60.6
Q ss_pred CCCEEEeecCcH----HHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEe-ch--HHHHHhh--hcc
Q 006577 454 DGDVLLTYGSSS----AVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-IN--AISYIIH--EVT 524 (640)
Q Consensus 454 dgdvILT~g~Ss----tV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~-Ds--Av~~iM~--~Vd 524 (640)
.|..|-.||-|- .+..+++...+++..++|+|+-+. ..|..++..+...++.+.|.+ |. .+..+++ +-|
T Consensus 49 ~~~~iW~Ha~s~Ge~~~~~~l~~~l~~~~~~~~i~~t~~t--~~~~~~~~~~~~~~~~~~~~P~d~~~~~~~~l~~~~Pd 126 (425)
T PRK05749 49 KGPLIWFHAVSVGETRAAIPLIRALRKRYPDLPILVTTMT--PTGSERAQALFGDDVEHRYLPYDLPGAVRRFLRFWRPK 126 (425)
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHHHHhCCCCcEEEeCCC--ccHHHHHHHhcCCCceEEEecCCcHHHHHHHHHhhCCC
Confidence 467899999993 355566666677777787766553 346677765555678888877 43 3444454 457
Q ss_pred EEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEec
Q 006577 525 RVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (640)
Q Consensus 525 kVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~a 563 (640)
.|++.-.-+.. .+...|+..++|++++.
T Consensus 127 ~v~~~~~~~~~-----------~~l~~~~~~~ip~vl~~ 154 (425)
T PRK05749 127 LVIIMETELWP-----------NLIAELKRRGIPLVLAN 154 (425)
T ss_pred EEEEEecchhH-----------HHHHHHHHCCCCEEEEe
Confidence 77542111111 12335788899999864
No 129
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=47.94 E-value=2.1e+02 Score=32.45 Aligned_cols=97 Identities=18% Similarity=0.256 Sum_probs=55.1
Q ss_pred EEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHH-HHH-HHHHhCCCceEEEec----hHHHHHhhhccEEEEcc
Q 006577 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLL-RRLVRKGLSCTYTHI----NAISYIIHEVTRVFLGA 530 (640)
Q Consensus 457 vILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~-~La-~eL~~~GI~vTlI~D----sAv~~iM~~VdkVlvGA 530 (640)
.|+|-+-...+..+|..+.+.|. +|++ +.+.+.|- .+. ..|...|+.++++.. ..+...+..-+++|+ .
T Consensus 79 av~~~SG~aAi~~al~all~~GD--~VI~--~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~~~d~~~l~~~I~~~Tk~I~-~ 153 (432)
T PRK06702 79 AVATASGQAAIMLAVLNICSSGD--HLLC--SSTVYGGTFNLFGVSLRKLGIDVTFFNPNLTADEIVALANDKTKLVY-A 153 (432)
T ss_pred EEEECCHHHHHHHHHHHhcCCCC--EEEE--CCCchHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHhCCcCCeEEE-E
Confidence 45543334444445555544443 6666 44555553 333 447889999998753 345555554456655 3
Q ss_pred eeEecCCCeecc-cchHHHHHHHhhCCCcEEE
Q 006577 531 SSVLSNGTVCSR-VGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 531 DaIlaNG~VvNK-iGT~~lAlaAk~~~VPVyV 561 (640)
+.. .| ...+ +---.|+-+|+.+|++++|
T Consensus 154 e~p-gn--P~~~v~Di~~I~~iA~~~gi~liv 182 (432)
T PRK06702 154 ESL-GN--PAMNVLNFKEFSDAAKELEVPFIV 182 (432)
T ss_pred EcC-CC--ccccccCHHHHHHHHHHcCCEEEE
Confidence 432 11 1111 1356678899999998877
No 130
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=47.90 E-value=1.7e+02 Score=32.97 Aligned_cols=97 Identities=20% Similarity=0.270 Sum_probs=48.7
Q ss_pred EEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHH-HH-HHHHhCCCceEEEec-hHH---HHHhhhccEEEEcc
Q 006577 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKL-LL-RRLVRKGLSCTYTHI-NAI---SYIIHEVTRVFLGA 530 (640)
Q Consensus 457 vILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~-La-~eL~~~GI~vTlI~D-sAv---~~iM~~VdkVlvGA 530 (640)
.|++-+-+..+..+|....+.|. +|++..+ .+.|.. +. ..|...|+.++++.| ... -..+..=+++|+ .
T Consensus 87 av~~sSG~aAi~~al~all~~Gd--~Vv~~~~--~y~~t~~~~~~~l~~~Gi~v~~vdd~~d~e~l~~ai~~~tklV~-i 161 (436)
T PRK07812 87 ALLLASGQAAETFAILNLAGAGD--HIVSSPR--LYGGTYNLFHYTLPKLGIEVSFVEDPDDLDAWRAAVRPNTKAFF-A 161 (436)
T ss_pred EEEEccHHHHHHHHHHHHhCCCC--EEEEeCC--cchHHHHHHHHHhhcCeEEEEEECCCCCHHHHHHhCCCCCeEEE-E
Confidence 44544434444555555544443 5565543 334432 22 446667888888742 122 222222233333 2
Q ss_pred eeEe-cCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 531 SSVL-SNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 531 DaIl-aNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
+.+. ..|.+.. --.|+-+||.+|++|+|
T Consensus 162 e~~sNp~G~v~D---l~~I~~la~~~gi~liV 190 (436)
T PRK07812 162 ETISNPQIDVLD---IPGVAEVAHEAGVPLIV 190 (436)
T ss_pred ECCCCCCCeecC---HHHHHHHHHHcCCEEEE
Confidence 2222 2243332 13577889999998877
No 131
>PRK12320 hypothetical protein; Provisional
Probab=47.88 E-value=39 Score=40.61 Aligned_cols=99 Identities=17% Similarity=0.101 Sum_probs=61.0
Q ss_pred EEEeecCcHHHHH-HHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEE--EechHHHHHhhhccEEEEcceeE
Q 006577 457 VLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTY--THINAISYIIHEVTRVFLGASSV 533 (640)
Q Consensus 457 vILT~g~SstV~~-vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTl--I~DsAv~~iM~~VdkVlvGADaI 533 (640)
+||..|-++.+-. ++..+.++| .+|++++..+.. +...++.+.. +.|..+..++.++|.||--|...
T Consensus 2 kILVTGAaGFIGs~La~~Ll~~G--~~Vi~ldr~~~~--------~~~~~ve~v~~Dl~d~~l~~al~~~D~VIHLAa~~ 71 (699)
T PRK12320 2 QILVTDATGAVGRSVTRQLIAAG--HTVSGIAQHPHD--------ALDPRVDYVCASLRNPVLQELAGEADAVIHLAPVD 71 (699)
T ss_pred EEEEECCCCHHHHHHHHHHHhCC--CEEEEEeCChhh--------cccCCceEEEccCCCHHHHHHhcCCCEEEEcCccC
Confidence 5888888877654 445555555 577777654321 1112322211 23444555567889888777432
Q ss_pred ecCCCeecccchHHHHHHHhhCCCcEEEeccc
Q 006577 534 LSNGTVCSRVGTACVAMVAYGFHIPVLVCCEA 565 (640)
Q Consensus 534 laNG~VvNKiGT~~lAlaAk~~~VPVyV~aet 565 (640)
..+..-.|-.||..+.-+|+.+++.++.++..
T Consensus 72 ~~~~~~vNv~Gt~nLleAA~~~GvRiV~~SS~ 103 (699)
T PRK12320 72 TSAPGGVGITGLAHVANAAARAGARLLFVSQA 103 (699)
T ss_pred ccchhhHHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 22222368899999999999999988876654
No 132
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=47.64 E-value=2.1e+02 Score=25.70 Aligned_cols=100 Identities=13% Similarity=0.109 Sum_probs=50.3
Q ss_pred cCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHH----------HHh--
Q 006577 453 RDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAIS----------YII-- 520 (640)
Q Consensus 453 ~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~----------~iM-- 520 (640)
....+++|.+.+..+..++..+... ..+|++.+. .+.|... ..+...|.++..+....-. ...
T Consensus 16 ~~~~~~~~~~~t~a~~~~~~~~~~~--~~~v~~~~~--~~~~~~~-~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~ 90 (170)
T cd01494 16 GNDKAVFVPSGTGANEAALLALLGP--GDEVIVDAN--GHGSRYW-VAAELAGAKPVPVPVDDAGYGGLDVAILEELKAK 90 (170)
T ss_pred CCCcEEEeCCcHHHHHHHHHHhCCC--CCEEEEeec--ccceehh-hHHHhcCCEEEEeccCCCCccchhhhhhhhcccc
Confidence 4446777776666666666655432 345666552 2223221 3445567777665422111 111
Q ss_pred hhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 521 HEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 521 ~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
.+...|++.. ...+++....+ -.++-+|+.+++++++
T Consensus 91 ~~~~~v~~~~--~~~~~g~~~~~--~~l~~~~~~~~~~li~ 127 (170)
T cd01494 91 PNVALIVITP--NTTSGGVLVPL--KEIRKIAKEYGILLLV 127 (170)
T ss_pred CceEEEEEec--CcCCCCeEcCH--HHHHHHHHHcCCEEEE
Confidence 1333333332 22233333322 5677888999998886
No 133
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=47.34 E-value=1.5e+02 Score=25.52 Aligned_cols=78 Identities=21% Similarity=0.164 Sum_probs=47.1
Q ss_pred HHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceE-EEe---c--hHHHHHhh--hccEEEEcceeEecCCCee
Q 006577 469 MILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCT-YTH---I--NAISYIIH--EVTRVFLGASSVLSNGTVC 540 (640)
Q Consensus 469 ~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vT-lI~---D--sAv~~iM~--~VdkVlvGADaIlaNG~Vv 540 (640)
.+++..++. .|++|.+++ .++.|.+.||+|. ++. + ..+...++ ++|+||.=.+. .+...
T Consensus 4 ~~~~~l~~l--G~~i~AT~g--------Ta~~L~~~Gi~~~~~~~ki~~~~~~i~~~i~~g~id~VIn~~~~---~~~~~ 70 (90)
T smart00851 4 ELAKRLAEL--GFELVATGG--------TAKFLREAGLPVKTLHPKVHGGILAILDLIKNGEIDLVINTLYP---LGAQP 70 (90)
T ss_pred HHHHHHHHC--CCEEEEccH--------HHHHHHHCCCcceeccCCCCCCCHHHHHHhcCCCeEEEEECCCc---Cccee
Confidence 344555543 588887753 3677888999985 331 1 11333333 79999874422 13333
Q ss_pred cccchHHHHHHHhhCCCcEE
Q 006577 541 SRVGTACVAMVAYGFHIPVL 560 (640)
Q Consensus 541 NKiGT~~lAlaAk~~~VPVy 560 (640)
.+ -.+.+=-+|-.++||++
T Consensus 71 ~~-d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 71 HE-DGKALRRAAENIDIPGA 89 (90)
T ss_pred cc-CcHHHHHHHHHcCCCee
Confidence 33 45667778999999975
No 134
>PRK14012 cysteine desulfurase; Provisional
Probab=47.16 E-value=4.1e+02 Score=28.87 Aligned_cols=101 Identities=17% Similarity=0.230 Sum_probs=48.9
Q ss_pred CEEEeecCcHHHHHHHHHHHH--cCCeeEEEEcCCCCCchHHHHH-HHHHhCCCceEEEech--------HHHHHhhhcc
Q 006577 456 DVLLTYGSSSAVEMILQHAHE--LGKQFRVVIVDSRPKHEGKLLL-RRLVRKGLSCTYTHIN--------AISYIIHEVT 524 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e--~Gk~f~ViV~ESRP~~eG~~La-~eL~~~GI~vTlI~Ds--------Av~~iM~~Vd 524 (640)
++++|-|-+..+..+|..+.. .+..-+|++. .+.+.....+ +.|...|+.+.++... .+-..+..=+
T Consensus 68 ~v~~~~g~t~al~~~l~~l~~~~~~~gd~Vi~~--~~~~~s~~~~~~~~~~~g~~~~~v~~~~~g~~d~~~l~~~i~~~t 145 (404)
T PRK14012 68 EIVFTSGATESDNLAIKGAAHFYQKKGKHIITS--KTEHKAVLDTCRQLEREGFEVTYLDPQSNGIIDLEKLEAAMRDDT 145 (404)
T ss_pred eEEEeCCHHHHHHHHHHHHHHhhcCCCCEEEEe--cCccHHHHHHHHHHHhCCCEEEEEccCCCCcCCHHHHHHhcCCCC
Confidence 466665555444444433321 1222356654 3334333333 4566679888877421 1222232223
Q ss_pred EEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 525 RVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 525 kVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
++++-.+.-...|.+.. + -.|+-+|+.+++.|+|
T Consensus 146 ~lv~~~~~~n~tG~~~~-~--~~I~~la~~~g~~viv 179 (404)
T PRK14012 146 ILVSIMHVNNEIGVIQD-I--AAIGEICRERGIIFHV 179 (404)
T ss_pred EEEEEECcCCCccchhh-H--HHHHHHHHHcCCEEEE
Confidence 33332222222343332 2 4577789999998886
No 135
>PLN02591 tryptophan synthase
Probab=46.59 E-value=2.2e+02 Score=29.98 Aligned_cols=102 Identities=20% Similarity=0.230 Sum_probs=65.8
Q ss_pred CEEEeecCc---HHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEe-chH----HHHHhhhccEEE
Q 006577 456 DVLLTYGSS---SAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-INA----ISYIIHEVTRVF 527 (640)
Q Consensus 456 dvILT~g~S---stV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~-DsA----v~~iM~~VdkVl 527 (640)
-++|||-|- .-+++|+..+.+.|-. -|++.|= |..|...+...+.++||+...+. .+. +..+....+-.|
T Consensus 81 ~ilm~Y~N~i~~~G~~~F~~~~~~aGv~-GviipDL-P~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFI 158 (250)
T PLN02591 81 IVLFTYYNPILKRGIDKFMATIKEAGVH-GLVVPDL-PLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFV 158 (250)
T ss_pred EEEEecccHHHHhHHHHHHHHHHHcCCC-EEEeCCC-CHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcE
Confidence 468888874 3578999999988743 5666664 66788888899999999876554 444 344444433222
Q ss_pred EcceeEecCCCeecccc-----hHHHHHHHhhCCCcEEEe
Q 006577 528 LGASSVLSNGTVCSRVG-----TACVAMVAYGFHIPVLVC 562 (640)
Q Consensus 528 vGADaIlaNG~VvNKiG-----T~~lAlaAk~~~VPVyV~ 562 (640)
..|..+|-.-.+.+ ...+..+-++.++|++|=
T Consensus 159 ---Y~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~Pv~vG 195 (250)
T PLN02591 159 ---YLVSSTGVTGARASVSGRVESLLQELKEVTDKPVAVG 195 (250)
T ss_pred ---EEeeCCCCcCCCcCCchhHHHHHHHHHhcCCCceEEe
Confidence 33333544433333 233666667779999984
No 136
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=46.52 E-value=2e+02 Score=30.76 Aligned_cols=101 Identities=15% Similarity=0.183 Sum_probs=57.3
Q ss_pred CCEEEeecCcHHHHHHHHHHHH-cCCeeEEEEcCCCCCchHHHHH-HHHH-hCCCceEEEec--------hHHHHHh-hh
Q 006577 455 GDVLLTYGSSSAVEMILQHAHE-LGKQFRVVIVDSRPKHEGKLLL-RRLV-RKGLSCTYTHI--------NAISYII-HE 522 (640)
Q Consensus 455 gdvILT~g~SstV~~vL~~A~e-~Gk~f~ViV~ESRP~~eG~~La-~eL~-~~GI~vTlI~D--------sAv~~iM-~~ 522 (640)
.++++|.+.+..+..++..... ....-+|+++... +.+.... .++. ..|+++++|.. ..+...+ ++
T Consensus 62 ~~v~~~~~~t~a~~~~~~~l~~~~~~g~~vl~~~~~--~~s~~~~~~~~~~~~g~~v~~i~~~~~~~~~~~~~~~~l~~~ 139 (371)
T PF00266_consen 62 EEVVFTSNGTEALNAVASSLLNPLKPGDEVLVTSNE--HPSNRYPWEEIAKRKGAEVRVIPADPGGSLDLEDLEEALNPD 139 (371)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHGTTTCEEEEEESS--HHHHHHHHHHHHHHTTEEEEEEEEGTTSSCSHHHHHHHHHTT
T ss_pred cccccccccchhhhhhhhcccccccccccccccccc--ccccccccccccccchhhhccccccccchhhhhhhhhhhccc
Confidence 4677776666656666665521 2233356555443 3344433 4444 67999998864 2233333 35
Q ss_pred ccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 523 VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 523 VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
.+.|++-. .-..+|. .+. .-.|+-+||++++.++|
T Consensus 140 ~~lv~~~~-~~~~tG~-~~p--i~~I~~~~~~~~~~~~v 174 (371)
T PF00266_consen 140 TRLVSISH-VENSTGV-RNP--IEEIAKLAHEYGALLVV 174 (371)
T ss_dssp ESEEEEES-BETTTTB-BSS--HHHHHHHHHHTTSEEEE
T ss_pred cceEEeec-ccccccE-Eee--eceehhhhhccCCceeE
Confidence 66665543 2234554 333 44677888999998887
No 137
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=46.32 E-value=4.6e+02 Score=29.21 Aligned_cols=99 Identities=10% Similarity=0.083 Sum_probs=55.5
Q ss_pred CCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEcceeE
Q 006577 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSV 533 (640)
Q Consensus 454 dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGADaI 533 (640)
.|..|+.++....+..+.+-+.+.|-....+++.+.-.....++...+...++....+.+.-..-+...+... ..|-|
T Consensus 298 ~gk~v~i~~~~~~~~~l~~~L~e~G~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~el~~~i~~~--~pdli 375 (428)
T cd01965 298 GGKRVAIAGDPDLLLGLSRFLLEMGAEPVAAVTGTDNPPFEKRMELLASLEGIPAEVVFVGDLWDLESLAKEE--PVDLL 375 (428)
T ss_pred cCCEEEEEcChHHHHHHHHHHHHcCCcceEEEEcCCCchhHHHHHHhhhhcCCCceEEECCCHHHHHHHhhcc--CCCEE
Confidence 5788888888877777767777777766555554443333344432333356666555554444443311110 23333
Q ss_pred ecCCCeecccchHHHHHHHhhCCCcEEEec
Q 006577 534 LSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (640)
Q Consensus 534 laNG~VvNKiGT~~lAlaAk~~~VPVyV~a 563 (640)
+.| ..-.-+|+..++|++.++
T Consensus 376 ig~---------~~~~~~a~~~~ip~i~~~ 396 (428)
T cd01965 376 IGN---------SHGRYLARDLGIPLVRVG 396 (428)
T ss_pred EEC---------chhHHHHHhcCCCEEEec
Confidence 322 223467888999998653
No 138
>cd04235 AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes both the ATP-phosphorylation of carbamate and carbamoyl phosphate (CP) utilization with the production of ATP from ADP and CP. Both CK (this CD) and nonhomologous CP synthetase synthesize carbamoyl phosphate, an essential precursor of arginine and pyrimidine bases, in the presence of ATP, bicarbonate, and ammonia. CK is a homodimer of 33 kDa subunits and is a member of the Amino Acid Kinase Superfamily (AAK).
Probab=46.03 E-value=3e+02 Score=29.97 Aligned_cols=49 Identities=18% Similarity=0.174 Sum_probs=31.3
Q ss_pred hHHHHHhhhccEEEEcce----eEecCCCeeccc----chHHHHHHHhhCCCcEEEe
Q 006577 514 NAISYIIHEVTRVFLGAS----SVLSNGTVCSRV----GTACVAMVAYGFHIPVLVC 562 (640)
Q Consensus 514 sAv~~iM~~VdkVlvGAD----aIlaNG~VvNKi----GT~~lAlaAk~~~VPVyV~ 562 (640)
.++-.++.+=-.+|+..+ .+..||.+.|-- +=...+++|.+.+.-.+++
T Consensus 172 ~~I~~Ll~~g~IpI~~GggGiPv~~~~~~~~gveaVid~D~~AallA~~l~Ad~Lii 228 (308)
T cd04235 172 EAIKTLVDNGVIVIAAGGGGIPVVREGGGLKGVEAVIDKDLASALLAEEINADLLVI 228 (308)
T ss_pred HHHHHHHHCCCEEEEECCCccCEEEcCCceeeeeeccCccHHHHHHHHHcCCCEEEE
Confidence 556666766666777766 455566554432 2466778899998876655
No 139
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=45.98 E-value=43 Score=30.93 Aligned_cols=96 Identities=17% Similarity=0.163 Sum_probs=58.5
Q ss_pred EEEeecCcHHHHHHHHHHHHcCCeeE-EEEcCCCC-CchHHHHHHHHH--hCCCceEEEechHHHHHhhhccEEEEccee
Q 006577 457 VLLTYGSSSAVEMILQHAHELGKQFR-VVIVDSRP-KHEGKLLLRRLV--RKGLSCTYTHINAISYIIHEVTRVFLGASS 532 (640)
Q Consensus 457 vILT~g~SstV~~vL~~A~e~Gk~f~-ViV~ESRP-~~eG~~La~eL~--~~GI~vTlI~DsAv~~iM~~VdkVlvGADa 532 (640)
.|+.+|+++-.=+.|.++..+...++ |-+++.++ .+.|+.+..-+. ..|++++ ..+..++.++|.||
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~----~~l~~~~~~~DVvI----- 72 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVT----DDLEELLEEADVVI----- 72 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEB----S-HHHHTTH-SEEE-----
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccc----hhHHHhcccCCEEE-----
Confidence 58889998877666666665556676 55667776 456655442222 3444444 44566666688664
Q ss_pred EecCCCeecccchHHHHHHHhhCCCcEEEecccc
Q 006577 533 VLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAY 566 (640)
Q Consensus 533 IlaNG~VvNKiGT~~lAlaAk~~~VPVyV~aety 566 (640)
++-+.-+++..+-.|.++++|+++.+--+
T Consensus 73 -----DfT~p~~~~~~~~~~~~~g~~~ViGTTG~ 101 (124)
T PF01113_consen 73 -----DFTNPDAVYDNLEYALKHGVPLVIGTTGF 101 (124)
T ss_dssp -----EES-HHHHHHHHHHHHHHT-EEEEE-SSS
T ss_pred -----EcCChHHhHHHHHHHHhCCCCEEEECCCC
Confidence 23366777888888888899999965443
No 140
>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated
Probab=45.96 E-value=2.9e+02 Score=29.98 Aligned_cols=101 Identities=13% Similarity=0.195 Sum_probs=49.2
Q ss_pred CCEEEeecCcHHHHHHHHHHH--HcCCeeEEEEcCCCCCchHHHHH-HHH-HhCCCceEEEec--------hHHHHHhh-
Q 006577 455 GDVLLTYGSSSAVEMILQHAH--ELGKQFRVVIVDSRPKHEGKLLL-RRL-VRKGLSCTYTHI--------NAISYIIH- 521 (640)
Q Consensus 455 gdvILT~g~SstV~~vL~~A~--e~Gk~f~ViV~ESRP~~eG~~La-~eL-~~~GI~vTlI~D--------sAv~~iM~- 521 (640)
.++++|.|.+..+..++.... ...+.-+|++.+. .+.+.... ..+ ...|+++.++.. ..+...+.
T Consensus 86 ~~v~~t~g~t~~l~~~~~~~~~~~~~~gd~vl~~~~--~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~ 163 (406)
T PRK09295 86 EELVFVRGTTEGINLVANSWGNSNVRAGDNIIISEM--EHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPALFDE 163 (406)
T ss_pred CeEEEeCCHHHHHHHHHHHhhhhcCCCcCEEEECcc--hhhHHHHHHHHHHHHcCcEEEEEecCCCCCCCHHHHHHhcCC
Confidence 467888666555554443321 1122235666642 22222222 233 346888887752 12222332
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 522 ~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
+...|++. ..=...|.+.. ...|+-+||.+++.|+|
T Consensus 164 ~t~lv~l~-~~~n~tG~~~~---~~~i~~~~~~~~~~viv 199 (406)
T PRK09295 164 RTRLLAIT-HVSNVLGTENP---LAEMIALAHQHGAKVLV 199 (406)
T ss_pred CcEEEEEe-cchhcccccCC---HHHHHHHHHHcCCEEEE
Confidence 34444433 22234454433 23577788888887765
No 141
>PRK12454 carbamate kinase-like carbamoyl phosphate synthetase; Reviewed
Probab=45.90 E-value=2.4e+02 Score=30.89 Aligned_cols=49 Identities=8% Similarity=0.147 Sum_probs=33.3
Q ss_pred hHHHHHhhhccEEEEccee----EecCCCeeccc----chHHHHHHHhhCCCcEEEe
Q 006577 514 NAISYIIHEVTRVFLGASS----VLSNGTVCSRV----GTACVAMVAYGFHIPVLVC 562 (640)
Q Consensus 514 sAv~~iM~~VdkVlvGADa----IlaNG~VvNKi----GT~~lAlaAk~~~VPVyV~ 562 (640)
.++-.++..=..||++.+. +-.||.+.|-- +=...+++|...+--.+++
T Consensus 176 ~aI~~LLe~G~IvI~~GgGGiPV~~~~g~~~gveaViD~D~aAa~LA~~L~AD~LIi 232 (313)
T PRK12454 176 EVIKALVENGFIVIASGGGGIPVIEEDGELKGVEAVIDKDLASELLAEELNADIFII 232 (313)
T ss_pred HHHHHHHHCCCEEEEeCCCccceEcCCCcEEeeeeecCccHHHHHHHHHcCCCEEEE
Confidence 5666777777778888775 44677766643 2445578899998875554
No 142
>PRK05764 aspartate aminotransferase; Provisional
Probab=45.61 E-value=2e+02 Score=30.80 Aligned_cols=96 Identities=20% Similarity=0.208 Sum_probs=49.8
Q ss_pred ccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEech----------HHHHHhh
Q 006577 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN----------AISYIIH 521 (640)
Q Consensus 452 I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds----------Av~~iM~ 521 (640)
+..+.+++|.|.+..+..++..+.+.|. +|++ ++ |.+.+.. ..+...|+++..+.-. .+...+.
T Consensus 89 ~~~~~i~~~~g~~~a~~~~~~~~~~~gd--~vl~-~~-p~y~~~~--~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~ 162 (393)
T PRK05764 89 YDPSQVIVTTGAKQALYNAFMALLDPGD--EVII-PA-PYWVSYP--EMVKLAGGVPVFVPTGEENGFKLTVEQLEAAIT 162 (393)
T ss_pred CCHHHEEEeCCcHHHHHHHHHHhcCCCC--EEEe-cC-CCCcchH--HHHHHcCCEEEEEecCcccCCcCCHHHHHHhhC
Confidence 3345678887777766666665544443 3444 33 5554432 2334568777665421 2222222
Q ss_pred -hccEEEEcceeEecCCCeecccchH-------HHHHHHhhCCCcEEE
Q 006577 522 -EVTRVFLGASSVLSNGTVCSRVGTA-------CVAMVAYGFHIPVLV 561 (640)
Q Consensus 522 -~VdkVlvGADaIlaNG~VvNKiGT~-------~lAlaAk~~~VPVyV 561 (640)
++..|++- . .-|..|.. .++-+|++|++.++|
T Consensus 163 ~~~~~v~~~-~-------p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~ 202 (393)
T PRK05764 163 PKTKALILN-S-------PSNPTGAVYSPEELEAIADVAVEHDIWVLS 202 (393)
T ss_pred ccceEEEEE-C-------CCCCCCcccCHHHHHHHHHHHHHCCcEEEE
Confidence 23333321 1 23455553 456678899987776
No 143
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=45.56 E-value=1.4e+02 Score=32.25 Aligned_cols=97 Identities=13% Similarity=0.082 Sum_probs=58.9
Q ss_pred HHHhcc--CCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhccE
Q 006577 448 AVTKIR--DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTR 525 (640)
Q Consensus 448 a~~~I~--dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vdk 525 (640)
+.+++. +-.+|..+|.......-++.......--+|+|. +|-...-..++.++.+.|+++....|. ..+++++|.
T Consensus 119 aa~~La~~~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~-~r~~~~~~~~~~~~~~~g~~v~~~~~~--~eav~~aDi 195 (325)
T TIGR02371 119 AAKYLARKDSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVY-CRTPSTREKFALRASDYEVPVRAATDP--REAVEGCDI 195 (325)
T ss_pred HHHHhCCCCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEE-CCCHHHHHHHHHHHHhhCCcEEEeCCH--HHHhccCCE
Confidence 344442 346788888776655444333222222345555 443333456777777788887766543 345589999
Q ss_pred EEEcc---e-----eEecCCCeecccchHH
Q 006577 526 VFLGA---S-----SVLSNGTVCSRVGTAC 547 (640)
Q Consensus 526 VlvGA---D-----aIlaNG~VvNKiGT~~ 547 (640)
|++.. + ..+..|..+|-+|++.
T Consensus 196 VitaT~s~~P~~~~~~l~~g~~v~~vGs~~ 225 (325)
T TIGR02371 196 LVTTTPSRKPVVKADWVSEGTHINAIGADA 225 (325)
T ss_pred EEEecCCCCcEecHHHcCCCCEEEecCCCC
Confidence 98755 2 2457788999999753
No 144
>PRK08462 biotin carboxylase; Validated
Probab=45.41 E-value=45 Score=36.99 Aligned_cols=80 Identities=16% Similarity=0.132 Sum_probs=47.5
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCc--hHHHHHHHHHhCCCc---eEEEechHHHHHhh--hccEEEE
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKH--EGKLLLRRLVRKGLS---CTYTHINAISYIIH--EVTRVFL 528 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~--eG~~La~eL~~~GI~---vTlI~DsAv~~iM~--~VdkVlv 528 (640)
.+||..+.+.....+++.|++.| ++|+++.+.+.. .+..++-+....|-. -.|+.-.++-.+.+ ++|.|+-
T Consensus 5 k~ili~~~g~~~~~~~~~~~~~G--~~~v~~~~~~d~~~~~~~~ad~~~~~~~~~~~~~y~~~~~l~~~~~~~~~D~i~p 82 (445)
T PRK08462 5 KRILIANRGEIALRAIRTIQEMG--KEAIAIYSTADKDALYLKYADAKICIGGAKSSESYLNIPAIISAAEIFEADAIFP 82 (445)
T ss_pred CEEEEECCcHHHHHHHHHHHHcC--CCEEEEechhhcCCchhhhCCEEEEeCCCchhcccCCHHHHHHHHHHcCCCEEEE
Confidence 47999999999999999999887 456666555543 444444221111111 13332233333333 6899998
Q ss_pred cceeEecCC
Q 006577 529 GASSVLSNG 537 (640)
Q Consensus 529 GADaIlaNG 537 (640)
|.+.+..|.
T Consensus 83 g~g~lse~~ 91 (445)
T PRK08462 83 GYGFLSENQ 91 (445)
T ss_pred CCCccccCH
Confidence 876544444
No 145
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=45.19 E-value=2.2e+02 Score=33.62 Aligned_cols=45 Identities=13% Similarity=0.034 Sum_probs=34.7
Q ss_pred EEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEE
Q 006577 483 VVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFL 528 (640)
Q Consensus 483 ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlv 528 (640)
+++..++-..+-.++++.+.+.|+++..|+++ -+.+.+.+|.+|.
T Consensus 520 I~iS~sG~t~e~i~~~~~Ak~~Ga~vIaIT~~-~spLa~~aD~~L~ 564 (638)
T PRK14101 520 VAVSKSGRAPELLRVLDVAMQAGAKVIAITSS-NTPLAKRATVALE 564 (638)
T ss_pred EEEeCCCCCHHHHHHHHHHHHCCCeEEEEcCC-CChhHhhCCEEEE
Confidence 34444555556677789999999999999996 5777788998874
No 146
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=45.10 E-value=1.2e+02 Score=31.00 Aligned_cols=102 Identities=16% Similarity=0.164 Sum_probs=53.8
Q ss_pred CCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHH----------HHh-hh
Q 006577 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAIS----------YII-HE 522 (640)
Q Consensus 454 dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~----------~iM-~~ 522 (640)
....++|.+-+..+..++..+...| -+|++. .|.+.+. ...+...|+.+.++....-. ... ++
T Consensus 59 ~~~~~~~~~~t~a~~~~~~~~~~~g--~~vl~~--~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 132 (350)
T cd00609 59 PEEIVVTNGAQEALSLLLRALLNPG--DEVLVP--DPTYPGY--EAAARLAGAEVVPVPLDEEGGFLLDLELLEAAKTPK 132 (350)
T ss_pred cceEEEecCcHHHHHHHHHHhCCCC--CEEEEc--CCCchhH--HHHHHHCCCEEEEEecccccCCccCHHHHHhhcCcc
Confidence 3457777777777776666664333 345554 3444443 33444566766665543221 111 14
Q ss_pred ccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEe
Q 006577 523 VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (640)
Q Consensus 523 VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~ 562 (640)
+..|++-. .-...|.+..----..+.-+|+.+|++|+|=
T Consensus 133 ~~~v~i~~-~~~~tG~~~~~~~l~~l~~~~~~~~~~~ivD 171 (350)
T cd00609 133 TKLLYLNN-PNNPTGAVLSEEELEELAELAKKHGILIISD 171 (350)
T ss_pred ceEEEEEC-CCCCCCcccCHHHHHHHHHHHHhCCeEEEEe
Confidence 55555533 3333454443222223446789999998873
No 147
>COG3109 ProQ Activator of osmoprotectant transporter ProP [Signal transduction mechanisms]
Probab=45.07 E-value=34 Score=34.60 Aligned_cols=24 Identities=42% Similarity=0.358 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCC
Q 006577 197 KAERRAIQEAQRAAKAAAKAEGIK 220 (640)
Q Consensus 197 kAERra~Qeaqraak~a~k~~~~~ 220 (640)
-+|+.|.|++||++|.+.|.+..+
T Consensus 103 laeakarv~a~r~~q~a~k~e~a~ 126 (208)
T COG3109 103 LAEAKARVQAQRAEQQAKKREEAP 126 (208)
T ss_pred HHHHHHHHHHHHHHHHHhcccccc
Confidence 478999999999999999888765
No 148
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=45.06 E-value=2.3e+02 Score=29.60 Aligned_cols=91 Identities=15% Similarity=0.185 Sum_probs=49.1
Q ss_pred CEEEeecCcHH---HHHHHHHHHHcCCe--eEEEEcCCCCCchHHHHHHHHHhCCCceEEEec-hHHHHHhhhccEEEEc
Q 006577 456 DVLLTYGSSSA---VEMILQHAHELGKQ--FRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI-NAISYIIHEVTRVFLG 529 (640)
Q Consensus 456 dvILT~g~Sst---V~~vL~~A~e~Gk~--f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D-sAv~~iM~~VdkVlvG 529 (640)
.+++|+|-+.. ...+|..+.+.... +.|++=...|.. .++-...... -++.+... +-+..+|..+|.+|..
T Consensus 172 ~iLi~~GG~d~~~~~~~~l~~l~~~~~~~~i~vv~G~~~~~~--~~l~~~~~~~-~~i~~~~~~~~m~~lm~~aDl~Is~ 248 (279)
T TIGR03590 172 RVLVSFGGADPDNLTLKLLSALAESQINISITLVTGSSNPNL--DELKKFAKEY-PNIILFIDVENMAELMNEADLAIGA 248 (279)
T ss_pred eEEEEeCCcCCcCHHHHHHHHHhccccCceEEEEECCCCcCH--HHHHHHHHhC-CCEEEEeCHHHHHHHHHHCCEEEEC
Confidence 46788875532 34555544443344 444443444543 2332222222 24555443 4588899999999773
Q ss_pred ceeEecCCCeecccchHHHHHHHhhCCCcEEEecc
Q 006577 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCE 564 (640)
Q Consensus 530 ADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~ae 564 (640)
.|+ ...=+-..|+|+++++-
T Consensus 249 -------------~G~--T~~E~~a~g~P~i~i~~ 268 (279)
T TIGR03590 249 -------------AGS--TSWERCCLGLPSLAICL 268 (279)
T ss_pred -------------Cch--HHHHHHHcCCCEEEEEe
Confidence 231 12233447999998744
No 149
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=45.05 E-value=1.6e+02 Score=28.31 Aligned_cols=88 Identities=13% Similarity=0.097 Sum_probs=52.8
Q ss_pred HHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhC-CCceEEEec------hHHHHHhh--hccEEEEcceeEecCC
Q 006577 467 VEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRK-GLSCTYTHI------NAISYIIH--EVTRVFLGASSVLSNG 537 (640)
Q Consensus 467 V~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~-GI~vTlI~D------sAv~~iM~--~VdkVlvGADaIlaNG 537 (640)
+..+.+...+.=..|++|.+++ .++.|.+. ||+|+.+.. ..+..+++ ++|+||-=.|-. |
T Consensus 19 l~~~a~~l~~ll~Gf~l~AT~g--------Ta~~L~~~~Gi~v~~vi~~~~gg~~~i~~~I~~g~i~lVInt~dp~---~ 87 (142)
T PRK05234 19 LVAWVKAHKDLLEQHELYATGT--------TGGLIQEATGLDVTRLLSGPLGGDQQIGALIAEGKIDMLIFFRDPL---T 87 (142)
T ss_pred HHHHHHHHHHHhcCCEEEEeCh--------HHHHHHhccCCeeEEEEcCCCCCchhHHHHHHcCceeEEEEecCCC---C
Confidence 4445555544301488887753 46778888 999987631 22333333 799997643322 2
Q ss_pred CeecccchHHHHHHHhhCCCcEEEeccc
Q 006577 538 TVCSRVGTACVAMVAYGFHIPVLVCCEA 565 (640)
Q Consensus 538 ~VvNKiGT~~lAlaAk~~~VPVyV~aet 565 (640)
.-......+.|=-+|-.|+||++-.-.+
T Consensus 88 ~~~~~~D~~~IRR~Av~~~IP~~T~l~t 115 (142)
T PRK05234 88 AQPHDPDVKALLRLADVWNIPVATNRAT 115 (142)
T ss_pred CCcccchHHHHHHHHHHcCCCEEcCHHH
Confidence 2111334557777899999999975444
No 150
>PRK07568 aspartate aminotransferase; Provisional
Probab=44.98 E-value=2.1e+02 Score=30.68 Aligned_cols=95 Identities=15% Similarity=0.225 Sum_probs=49.9
Q ss_pred cCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEec---h--------HHHHHhh
Q 006577 453 RDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI---N--------AISYIIH 521 (640)
Q Consensus 453 ~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D---s--------Av~~iM~ 521 (640)
....+++|-|.+..+..++....+.| -+|++.+ |.+.+.. ..+...|+.+..+.. . .+...+.
T Consensus 87 ~~~~i~~t~G~~~al~~~~~~l~~~g--d~Vl~~~--p~y~~~~--~~~~~~g~~~~~v~~~~~~g~~~~~~~~l~~~~~ 160 (397)
T PRK07568 87 EPDEILITNGGSEAILFAMMAICDPG--DEILVPE--PFYANYN--GFATSAGVKIVPVTTKIEEGFHLPSKEEIEKLIT 160 (397)
T ss_pred CcceEEEcCChHHHHHHHHHHhcCCC--CEEEEec--CCCccHH--HHHHHcCCEEEEeecCcccCCCCCCHHHHHHhcC
Confidence 34467777777766655554443333 3566654 6554432 224456877766641 1 1112222
Q ss_pred -hccEEEEcceeEecCCCeecccch-------HHHHHHHhhCCCcEEE
Q 006577 522 -EVTRVFLGASSVLSNGTVCSRVGT-------ACVAMVAYGFHIPVLV 561 (640)
Q Consensus 522 -~VdkVlvGADaIlaNG~VvNKiGT-------~~lAlaAk~~~VPVyV 561 (640)
++.+|++. | .-|..|+ ..|+-+|+++++.+++
T Consensus 161 ~~~~~v~i~------~--p~NPtG~~~~~~~~~~i~~~~~~~~~~ii~ 200 (397)
T PRK07568 161 PKTKAILIS------N--PGNPTGVVYTKEELEMLAEIAKKHDLFLIS 200 (397)
T ss_pred ccceEEEEE------C--CCCCCCccCCHHHHHHHHHHHHHCCcEEEE
Confidence 23333222 2 2255664 4466778899987765
No 151
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=44.93 E-value=2.9e+02 Score=26.58 Aligned_cols=44 Identities=7% Similarity=-0.114 Sum_probs=33.4
Q ss_pred CCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEcc
Q 006577 487 DSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA 530 (640)
Q Consensus 487 ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGA 530 (640)
-|.-..+=.++++.+.+.|+++..|+++.-+.+-+.+|.+|.-.
T Consensus 110 ~SG~t~~~i~~~~~ak~~Ga~vI~IT~~~~s~La~~aD~~l~~~ 153 (177)
T cd05006 110 TSGNSPNVLKALEAAKERGMKTIALTGRDGGKLLELADIEIHVP 153 (177)
T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCCEEEEeC
Confidence 33433455666788899999999999988888888888887653
No 152
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=44.85 E-value=3.2e+02 Score=28.96 Aligned_cols=98 Identities=15% Similarity=0.123 Sum_probs=49.2
Q ss_pred CEEEeecC-cHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechH-----HHHH---hhh---c
Q 006577 456 DVLLTYGS-SSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA-----ISYI---IHE---V 523 (640)
Q Consensus 456 dvILT~g~-SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsA-----v~~i---M~~---V 523 (640)
+.|+..++ |..+..++......|. +|+|.+ +..-|..+...+...|+++.+|.... +..+ +.. +
T Consensus 57 ~~i~~~~~gt~~l~~~~~~l~~~~~--~vlv~~--~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~d~~~l~~~l~~~~~~ 132 (368)
T PRK13479 57 TCVPLQGSGTFSVEAAIGSLVPRDG--KVLVPD--NGAYGARIAQIAEYLGIAHVVLDTGEDEPPDAAEVEAALAADPRI 132 (368)
T ss_pred eEEEEcCCcHHHHHHHHHhccCCCC--eEEEEe--CCchHHHHHHHHHHcCCcEEEEECCCCCCCCHHHHHHHHHhCCCC
Confidence 44544444 4555666665543332 455543 33445445555666798888876421 2222 221 1
Q ss_pred cEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 524 TRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 524 dkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
..|+ -++.=...|.+.. ...|+-+|+.++++++|
T Consensus 133 ~~v~-~~~~~~~tG~~~~---~~~i~~l~~~~~~~liv 166 (368)
T PRK13479 133 THVA-LVHCETTTGILNP---LDEIAAVAKRHGKRLIV 166 (368)
T ss_pred cEEE-EEcccCccccccC---HHHHHHHHHHcCCEEEE
Confidence 1222 1111122343332 35788888999886665
No 153
>PRK09028 cystathionine beta-lyase; Provisional
Probab=44.82 E-value=2e+02 Score=31.98 Aligned_cols=94 Identities=21% Similarity=0.221 Sum_probs=53.7
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHH-HHH-HHHHhCCCceEEEec---hHHHHHhh-hccEEEEc
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLL-RRLVRKGLSCTYTHI---NAISYIIH-EVTRVFLG 529 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~-~La-~eL~~~GI~vTlI~D---sAv~~iM~-~VdkVlvG 529 (640)
++++|-|-+..+..++....+.|. +|++.+ |.+.|. .+. ..|...|+.+.++.. ..+...+. +..+|++-
T Consensus 78 ~~~~~~sG~~Ai~~~l~all~~GD--~Vvv~~--~~Y~~t~~l~~~~l~~~Gi~v~~v~~~~~e~l~~~l~~~TklV~le 153 (394)
T PRK09028 78 GTALYPSGAAAISNALLSFLKAGD--HLLMVD--SCYEPTRDLCDKILKGFGIETTYYDPMIGEGIRELIRPNTKVLFLE 153 (394)
T ss_pred cEEEECCHHHHHHHHHHHHhCCCC--EEEEEC--CCcHHHHHHHHHhhhhcceEEEEECCCCHHHHHHhcCcCceEEEEE
Confidence 456665555555556655555553 566653 445443 445 456778999987642 33444443 34444432
Q ss_pred ceeEecCCCeecccch----HHHHHHHhhCCCcEEE
Q 006577 530 ASSVLSNGTVCSRVGT----ACVAMVAYGFHIPVLV 561 (640)
Q Consensus 530 ADaIlaNG~VvNKiGT----~~lAlaAk~~~VPVyV 561 (640)
+.-|..|. ..|+-+||.+++.++|
T Consensus 154 --------spsNPtg~v~dl~~I~~la~~~g~~lvv 181 (394)
T PRK09028 154 --------SPGSITMEVQDVPTLSRIAHEHDIVVML 181 (394)
T ss_pred --------CCCCCCCcHHHHHHHHHHHHHcCCEEEE
Confidence 23344442 4566788999987775
No 154
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=44.65 E-value=3.5e+02 Score=27.44 Aligned_cols=66 Identities=23% Similarity=0.244 Sum_probs=40.7
Q ss_pred hccCCCEEE---eecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhccEE
Q 006577 451 KIRDGDVLL---TYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRV 526 (640)
Q Consensus 451 ~I~dgdvIL---T~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkV 526 (640)
+=+.||+++ |-|||..|++.+..|++. ..+|+++-++-..+ |.. |. ++.+...+--..-+++++.+
T Consensus 106 ~g~~GDvLigISTSGNS~nVl~Ai~~Ak~~--gm~vI~ltG~~GG~---~~~-~~----D~~i~VPs~~t~RIQE~Hi~ 174 (176)
T COG0279 106 LGQPGDVLIGISTSGNSKNVLKAIEAAKEK--GMTVIALTGKDGGK---LAG-LL----DVEIRVPSTDTARIQEMHIL 174 (176)
T ss_pred cCCCCCEEEEEeCCCCCHHHHHHHHHHHHc--CCEEEEEecCCCcc---ccc-cc----ceEEecCCCcchhhhhhhee
Confidence 336799865 557788899999999875 57888887665442 221 11 55555544444444444443
No 155
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=44.33 E-value=34 Score=31.33 Aligned_cols=67 Identities=18% Similarity=0.224 Sum_probs=41.9
Q ss_pred HHHHHHHHhCCCceEEEech--HHHHHhh--hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEecccc
Q 006577 495 KLLLRRLVRKGLSCTYTHIN--AISYIIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAY 566 (640)
Q Consensus 495 ~~La~eL~~~GI~vTlI~Ds--Av~~iM~--~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~aety 566 (640)
.+|..+|.+.|..+..+... +...+.. .+.+|++..| +.--....-..-.+-...+++||+++.+..
T Consensus 7 ~~l~~~L~~~~~~vv~~~~~dd~~~~i~~~~~i~avvi~~d-----~~~~~~~~~ll~~i~~~~~~iPVFl~~~~~ 77 (115)
T PF03709_consen 7 RELAEALEQRGREVVDADSTDDALAIIESFTDIAAVVISWD-----GEEEDEAQELLDKIRERNFGIPVFLLAERD 77 (115)
T ss_dssp HHHHHHHHHTTTEEEEESSHHHHHHHHHCTTTEEEEEEECH-----HHHHHHHHHHHHHHHHHSTT-EEEEEESCC
T ss_pred HHHHHHHHHCCCEEEEeCChHHHHHHHHhCCCeeEEEEEcc-----cccchhHHHHHHHHHHhCCCCCEEEEecCC
Confidence 35668888889988887744 4555544 7899999887 111111112222344557899999998854
No 156
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=44.12 E-value=87 Score=28.74 Aligned_cols=86 Identities=17% Similarity=0.214 Sum_probs=49.8
Q ss_pred EEEeecCcHHHHHHHHHHHHcC-CeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhh--hccEEEEcceeE
Q 006577 457 VLLTYGSSSAVEMILQHAHELG-KQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIH--EVTRVFLGASSV 533 (640)
Q Consensus 457 vILT~g~SstV~~vL~~A~e~G-k~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~--~VdkVlvGADaI 533 (640)
+||.+|+.+- ++.|..+..+. +.-+|||.-..|..... .. .+++....-..+..+.+ ++|+||+|-+.-
T Consensus 2 kVLviGsGgR-EHAia~~l~~s~~v~~v~~aPGN~G~~~~------~~-~~~~~~~d~~~l~~~a~~~~idlvvvGPE~p 73 (100)
T PF02844_consen 2 KVLVIGSGGR-EHAIAWKLSQSPSVEEVYVAPGNPGTAEL------GK-NVPIDITDPEELADFAKENKIDLVVVGPEAP 73 (100)
T ss_dssp EEEEEESSHH-HHHHHHHHTTCTTEEEEEEEE--TTGGGT------SE-EE-S-TT-HHHHHHHHHHTTESEEEESSHHH
T ss_pred EEEEECCCHH-HHHHHHHHhcCCCCCEEEEeCCCHHHHhh------ce-ecCCCCCCHHHHHHHHHHcCCCEEEECChHH
Confidence 6888887754 55565555444 44689998776654211 00 01111111123333333 799999999999
Q ss_pred ecCCCeecccchHHHHHHHhhCCCcEE
Q 006577 534 LSNGTVCSRVGTACVAMVAYGFHIPVL 560 (640)
Q Consensus 534 laNG~VvNKiGT~~lAlaAk~~~VPVy 560 (640)
+.+| ++=.-+..|||++
T Consensus 74 L~~G----------l~D~l~~~gi~vf 90 (100)
T PF02844_consen 74 LVAG----------LADALRAAGIPVF 90 (100)
T ss_dssp HHTT----------HHHHHHHTT-CEE
T ss_pred HHHH----------HHHHHHHCCCcEE
Confidence 9998 5666677888876
No 157
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=44.04 E-value=79 Score=34.33 Aligned_cols=68 Identities=15% Similarity=0.231 Sum_probs=46.8
Q ss_pred HHHHHhCCCceEEEechH--------HHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhh----CCCcEEEeccc
Q 006577 498 LRRLVRKGLSCTYTHINA--------ISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYG----FHIPVLVCCEA 565 (640)
Q Consensus 498 a~eL~~~GI~vTlI~DsA--------v~~iM~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~----~~VPVyV~aet 565 (640)
+..|.+.||+|++|.... +-...++..+|+ ++.++....-.|....+.++.+ ..+||.-++-.
T Consensus 220 a~~L~~~Gi~~~VId~~~ikPlD~~~i~~~~~~t~~vv-----~vEE~~~~gGlG~~va~~l~e~~f~~~~~pv~rl~~~ 294 (327)
T CHL00144 220 VKVLVEKGYDPEIIDLISLKPLDLGTISKSVKKTHKVL-----IVEECMKTGGIGAELIAQINEHLFDELDAPIVRLSSQ 294 (327)
T ss_pred HHHHHhcCCCEEEEecCcCCCCCHHHHHHHHHhhCcEE-----EEECCCCCCCHHHHHHHHHHHhchhhcCCCeEEEccC
Confidence 345666777777765433 334445666665 4678888888999999999887 47799877665
Q ss_pred ccccc
Q 006577 566 YKFHE 570 (640)
Q Consensus 566 yKf~~ 570 (640)
..|.+
T Consensus 295 d~~~~ 299 (327)
T CHL00144 295 DVPTP 299 (327)
T ss_pred CCcCC
Confidence 55543
No 158
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=43.71 E-value=2.3e+02 Score=24.93 Aligned_cols=61 Identities=16% Similarity=0.138 Sum_probs=34.7
Q ss_pred HHHHhCCCceEEEechHH-HHHhh-----hccEEEEcceeEecCCCeec-ccchHHHHHHHhhCCCcEEEe
Q 006577 499 RRLVRKGLSCTYTHINAI-SYIIH-----EVTRVFLGASSVLSNGTVCS-RVGTACVAMVAYGFHIPVLVC 562 (640)
Q Consensus 499 ~eL~~~GI~vTlI~DsAv-~~iM~-----~VdkVlvGADaIlaNG~VvN-KiGT~~lAlaAk~~~VPVyV~ 562 (640)
..+.+.|+++.++....+ ..++. ++|.+++|++.- |.+-. -.|+..--++-+.-++||+|+
T Consensus 56 ~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~dllviG~~~~---~~~~~~~~Gs~~~~v~~~a~~~~v~v~ 123 (124)
T cd01987 56 RLAEELGAEVVTLPGDDVAEAIVEFAREHNVTQIVVGKSRR---SRWRELFRGSLVDRLLRRAGNIDVHIV 123 (124)
T ss_pred HHHHHcCCEEEEEeCCcHHHHHHHHHHHcCCCEEEeCCCCC---chHHHHhcccHHHHHHHhCCCCeEEEe
Confidence 345567888766654333 22332 589999999853 22222 234433334333348999886
No 159
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=43.67 E-value=84 Score=34.59 Aligned_cols=86 Identities=21% Similarity=0.255 Sum_probs=51.9
Q ss_pred HhccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEech--------HHHHHhh
Q 006577 450 TKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN--------AISYIIH 521 (640)
Q Consensus 450 ~~I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds--------Av~~iM~ 521 (640)
..+++|+-|+..+++..|...+..+ ..|.+.||+|++|.-. .+-...+
T Consensus 223 ~v~r~G~dvtIia~G~~v~~Al~Aa------------------------~~L~~~GI~v~VId~~~ikPlD~~~l~~~~~ 278 (356)
T PLN02683 223 KIEREGKDVTIVAFSKMVGYALKAA------------------------EILAKEGISAEVINLRSIRPLDRDTINASVR 278 (356)
T ss_pred EEEEcCCCEEEEEccHHHHHHHHHH------------------------HHHHhcCCCEEEEECCCCCccCHHHHHHHHh
Confidence 3445565555555555555554433 3455566666665433 2334455
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHHHhh----CCCcEEEecc
Q 006577 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYG----FHIPVLVCCE 564 (640)
Q Consensus 522 ~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~----~~VPVyV~ae 564 (640)
+.++|| ++.++....-.|+...+.++.. ...|+..++-
T Consensus 279 ~t~~vv-----tvEE~~~~GGlGs~Va~~l~e~~f~~~~~~v~rlg~ 320 (356)
T PLN02683 279 KTNRLV-----TVEEGWPQHGVGAEICASVVEESFDYLDAPVERIAG 320 (356)
T ss_pred hcCeEE-----EEeCCCcCCCHHHHHHHHHHHhchhccCCCeEEecc
Confidence 667764 5567777777899998888887 3567776543
No 160
>PRK10481 hypothetical protein; Provisional
Probab=43.66 E-value=1.4e+02 Score=31.15 Aligned_cols=86 Identities=13% Similarity=0.072 Sum_probs=52.4
Q ss_pred HHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEech----HHHHHhhhcc-EEEEcceeEecCCCeecccc
Q 006577 470 ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN----AISYIIHEVT-RVFLGASSVLSNGTVCSRVG 544 (640)
Q Consensus 470 vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds----Av~~iM~~Vd-kVlvGADaIlaNG~VvNKiG 544 (640)
-+..|.-.|++|-|++..- -++.+..++..+.|+++.+...+ ....+..-+. ..--|||.|+-++.=++.
T Consensus 121 ~lv~Al~~g~riGVitP~~---~qi~~~~~kw~~~G~~v~~~~aspy~~~~~~l~~aa~~L~~~gaD~Ivl~C~G~~~-- 195 (224)
T PRK10481 121 PLVAAIVGGHQVGVIVPVE---EQLAQQAQKWQVLQKPPVFALASPYHGSEEELIDAGKELLDQGADVIVLDCLGYHQ-- 195 (224)
T ss_pred HHHHHhcCCCeEEEEEeCH---HHHHHHHHHHHhcCCceeEeecCCCCCCHHHHHHHHHHhhcCCCCEEEEeCCCcCH--
Confidence 3444555678898887642 25556667777779998877622 1111111111 112466777666655544
Q ss_pred hHHHHHHHhhCCCcEEE
Q 006577 545 TACVAMVAYGFHIPVLV 561 (640)
Q Consensus 545 T~~lAlaAk~~~VPVyV 561 (640)
-....+.+..++||+-
T Consensus 196 -~~~~~le~~lg~PVI~ 211 (224)
T PRK10481 196 -RHRDLLQKALDVPVLL 211 (224)
T ss_pred -HHHHHHHHHHCcCEEc
Confidence 4477899999999984
No 161
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=43.54 E-value=2.4e+02 Score=30.07 Aligned_cols=94 Identities=18% Similarity=0.250 Sum_probs=50.1
Q ss_pred ccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEech---------HH-HHHhh
Q 006577 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN---------AI-SYIIH 521 (640)
Q Consensus 452 I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds---------Av-~~iM~ 521 (640)
+...++++|.|.+..+..+++. ...| .|++. .|.+.... ..+...|+++..+... .+ ..+-+
T Consensus 70 ~~~~~i~it~Ga~~~l~~~~~~-l~~g---~viv~--~P~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~ 141 (356)
T PRK08056 70 VPASWILAGNGETESIFAVVSG-LKPR---RAMIV--TPGFAEYR--RALQQVGCEIRRYSLREADGWQLTDAILEALTP 141 (356)
T ss_pred cChhhEEECCCHHHHHHHHHHH-hCCC---CEEEe--CCCcHHHH--HHHHHcCCeEEEEecccccCCCccHHHHHhccC
Confidence 3444677777766665555553 4333 34444 36655433 2344568777766421 11 11223
Q ss_pred hccEEEEcceeEecCCCeecccch-------HHHHHHHhhCCCcEEE
Q 006577 522 EVTRVFLGASSVLSNGTVCSRVGT-------ACVAMVAYGFHIPVLV 561 (640)
Q Consensus 522 ~VdkVlvGADaIlaNG~VvNKiGT-------~~lAlaAk~~~VPVyV 561 (640)
++.+|++. +.-|.+|. ..|+-.|+++++.+++
T Consensus 142 ~~k~v~l~--------~p~NPTG~~~~~~~~~~i~~~a~~~~~~ii~ 180 (356)
T PRK08056 142 DLDCLFLC--------TPNNPTGLLPERQLLQAIAERCKSLNIALIL 180 (356)
T ss_pred CCCEEEEe--------CCcCCCCCCCCHHHHHHHHHHHHhcCCEEEE
Confidence 45555541 23456664 3456678888987765
No 162
>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.
Probab=43.38 E-value=3e+02 Score=30.55 Aligned_cols=97 Identities=19% Similarity=0.267 Sum_probs=54.8
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHH-HH-HHHHhCCCceEEEech---HHHHHhh-hccEEEEc
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKL-LL-RRLVRKGLSCTYTHIN---AISYIIH-EVTRVFLG 529 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~-La-~eL~~~GI~vTlI~Ds---Av~~iM~-~VdkVlvG 529 (640)
+.|+|-+-+..+..+|..+.+.|. +|++. .+.+.|.. +. ..+...|+.++++... .+-..+. +...|++
T Consensus 74 ~~v~~~sG~~Ai~~al~~l~~~Gd--~Vl~~--~~~y~~t~~~~~~~~~~~G~~v~~v~~~d~~~l~~~l~~~t~~V~l- 148 (418)
T TIGR01326 74 AALAVASGQAAITYAILNLAQAGD--NIVSS--SYLYGGTYNLFKHTLKRLGIEVRFVDPDDPEEFEKAIDENTKAVFA- 148 (418)
T ss_pred eEEEEccHHHHHHHHHHHHhCCCC--EEEEE--CCCcHHHHHHHHHHHHHcCcEEEEECCCCHHHHHHhcCcCCeEEEE-
Confidence 466665555666666665555454 45554 46665543 22 4566789998887632 2333333 4555554
Q ss_pred ceeEe-cCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 530 ASSVL-SNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 530 ADaIl-aNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
+... .+|.+.. --.|+-+|+.++++++|
T Consensus 149 -e~p~NPtg~v~d---l~~I~~la~~~~i~liv 177 (418)
T TIGR01326 149 -ETIGNPAINVPD---IEAIAEVAHAHGVPLIV 177 (418)
T ss_pred -ECCCCCCCeecC---HHHHHHHHHHcCCEEEE
Confidence 2221 2233332 24566779999998887
No 163
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=43.34 E-value=67 Score=32.64 Aligned_cols=100 Identities=15% Similarity=0.061 Sum_probs=61.5
Q ss_pred EEeecCcHHHHHHHHH-HHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceE--EEec-hHHHHHhhhc-cEEEEccee
Q 006577 458 LLTYGSSSAVEMILQH-AHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCT--YTHI-NAISYIIHEV-TRVFLGASS 532 (640)
Q Consensus 458 ILT~g~SstV~~vL~~-A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vT--lI~D-sAv~~iM~~V-dkVlvGADa 532 (640)
||+.|-++-|=.-|.. +.++ ..+|+.++..+....... .++... -+.| ..+...+..+ |.||--|-.
T Consensus 3 ILVtG~tGfiG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~------~~~~~~~~d~~~~~~~~~~~~~~~d~vih~aa~ 74 (314)
T COG0451 3 ILVTGGAGFIGSHLVERLLAA--GHDVRGLDRLRDGLDPLL------SGVEFVVLDLTDRDLVDELAKGVPDAVIHLAAQ 74 (314)
T ss_pred EEEEcCcccHHHHHHHHHHhC--CCeEEEEeCCCccccccc------cccceeeecccchHHHHHHHhcCCCEEEEcccc
Confidence 8888888777655544 4443 456666664443222111 122111 1233 5666667777 888776665
Q ss_pred EecCCC---------eecccchHHHHHHHhhCCCcEEEeccc
Q 006577 533 VLSNGT---------VCSRVGTACVAMVAYGFHIPVLVCCEA 565 (640)
Q Consensus 533 IlaNG~---------VvNKiGT~~lAlaAk~~~VPVyV~aet 565 (640)
....+. -+|-.||..+.-+|+..+++-+|.+.+
T Consensus 75 ~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~~~~v~~ss 116 (314)
T COG0451 75 SSVPDSNASDPAEFLDVNVDGTLNLLEAARAAGVKRFVFASS 116 (314)
T ss_pred CchhhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCC
Confidence 544443 589999999999999988877776544
No 164
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=43.32 E-value=4e+02 Score=27.71 Aligned_cols=100 Identities=16% Similarity=0.131 Sum_probs=51.8
Q ss_pred CCEEEeecCcHHHHHHHHHHHHc------------CCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEe-c-------h
Q 006577 455 GDVLLTYGSSSAVEMILQHAHEL------------GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-I-------N 514 (640)
Q Consensus 455 gdvILT~g~SstV~~vL~~A~e~------------Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~-D-------s 514 (640)
...|.|.|-+......+..+... +....|++.+ +.+.....+ +...|+.+..+. | .
T Consensus 58 ~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~h~~~~~~--~~~~g~~~~~v~~~~~~~~d~~ 133 (345)
T cd06450 58 ADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSD--QAHVSVEKA--AAYLDVKVRLVPVDEDGRMDPE 133 (345)
T ss_pred CCEEEeCChhHHHHHHHHHHHHHhhhhhhcccccccCCeEEEEcC--cchhHHHHH--HHHHhcCeEEeeeCCCCCcCHH
Confidence 46788877777655555444321 1233444443 333222222 222377777664 2 1
Q ss_pred HHHHHhhh------ccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 515 AISYIIHE------VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 515 Av~~iM~~------VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
.+-..+.+ -.++++....-...|.+.. -..++-+|+.|+++++|
T Consensus 134 ~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~---~~~i~~~~~~~~~~l~v 183 (345)
T cd06450 134 ALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDP---LEEIADLAEKYDLWLHV 183 (345)
T ss_pred HHHHHHHHHHHCCCCcEEEEEecccCCCCCCCC---HHHHHHHHHHhCCeEEE
Confidence 22333333 3344444444444555422 35677889999998887
No 165
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=43.30 E-value=2.3e+02 Score=24.81 Aligned_cols=60 Identities=13% Similarity=0.017 Sum_probs=35.9
Q ss_pred HHHhCCCceEEEec---h---HHHHHhh--hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEe
Q 006577 500 RLVRKGLSCTYTHI---N---AISYIIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (640)
Q Consensus 500 eL~~~GI~vTlI~D---s---Av~~iM~--~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~ 562 (640)
.+.+.|+++..+.. + ++..+.. ++|.|++|...=...+. --.|+.... +.++-+.||+|+
T Consensus 64 ~~~~~g~~~~~~~~~~~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~--~~lGs~~~~-v~~~~~~pvlvv 131 (132)
T cd01988 64 IAASLGVPVHTIIRIDHDIASGILRTAKERQADLIIMGWHGSTSLRD--RLFGGVIDQ-VLESAPCDVAVV 131 (132)
T ss_pred HhhhcCCceEEEEEecCCHHHHHHHHHHhcCCCEEEEecCCCCCccc--eecCchHHH-HHhcCCCCEEEe
Confidence 44457888876542 1 2333333 59999999975332211 224664444 457778999985
No 166
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=43.24 E-value=1.6e+02 Score=31.70 Aligned_cols=103 Identities=17% Similarity=0.119 Sum_probs=68.0
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEcceeEec
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLS 535 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGADaIla 535 (640)
|..+..-....|..+|+++.+.|.+.-|++.+.-+..+.++|.....+.|+. ++==|.++.+-........-......
T Consensus 67 DlAvi~vp~~~v~~~l~e~~~~gvk~avI~s~Gf~~~~~~~l~~~a~~~gir--vlGPNc~Gi~~~~~~~~~~~~~~~~~ 144 (291)
T PRK05678 67 NASVIYVPPPFAADAILEAIDAGIDLIVCITEGIPVLDMLEVKAYLERKKTR--LIGPNCPGIITPGECKIGIMPGHIHK 144 (291)
T ss_pred CEEEEEcCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCE--EECCCCCcccccccceeeecCCCCCC
Confidence 6666666778889999999999988888888887765566777777777663 34344444443333222221222233
Q ss_pred CC--CeecccchHHHHHH--HhhCCCcEE
Q 006577 536 NG--TVCSRVGTACVAMV--AYGFHIPVL 560 (640)
Q Consensus 536 NG--~VvNKiGT~~lAla--Ak~~~VPVy 560 (640)
-| .+++..|++..+++ ++..++-|-
T Consensus 145 ~G~valiSQSGal~~~~~~~~~~~giG~s 173 (291)
T PRK05678 145 KGRVGVVSRSGTLTYEAVAQLTDLGFGQS 173 (291)
T ss_pred CCCEEEEeccHHHHHHHHHHHHHcCCCeE
Confidence 45 57899999888876 677777664
No 167
>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed
Probab=43.17 E-value=1.5e+02 Score=31.59 Aligned_cols=94 Identities=17% Similarity=0.060 Sum_probs=52.5
Q ss_pred ccCCCEEEeecCcHHHHHHHHHH-HHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHh-hhccEEEEc
Q 006577 452 IRDGDVLLTYGSSSAVEMILQHA-HELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYII-HEVTRVFLG 529 (640)
Q Consensus 452 I~dgdvILT~g~SstV~~vL~~A-~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM-~~VdkVlvG 529 (640)
+...++++|.|.+..+..++... ...|. +|++ + .|.+.+...+.+ ..|+.+..+.+ ...+- .++.
T Consensus 84 ~~~~~I~it~G~~~~i~~~~~~l~~~~gd--~Vl~-~-~p~y~~~~~~~~--~~g~~~~~~~~--~~~l~~~~~~----- 150 (364)
T PRK07865 84 LDPAAVLPVIGSKELVAWLPTLLGLGPGD--VVVI-P-ELAYPTYEVGAR--LAGATVVRADS--LTELGPQRPA----- 150 (364)
T ss_pred CCcccEEEccChHHHHHHHHHHHcCCCCC--EEEE-C-CCCcccHHHHHH--hcCCEEEecCC--hhhCCcccce-----
Confidence 44567899999888776544443 23342 4444 3 366666544433 35777766643 11111 1233
Q ss_pred ceeEecCCCeecccchH-------HHHHHHhhCCCcEEE
Q 006577 530 ASSVLSNGTVCSRVGTA-------CVAMVAYGFHIPVLV 561 (640)
Q Consensus 530 ADaIlaNG~VvNKiGT~-------~lAlaAk~~~VPVyV 561 (640)
.|+-+ ..-|..|+. .++-+|++|++.+++
T Consensus 151 --~v~~~-~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~ 186 (364)
T PRK07865 151 --LIWLN-SPSNPTGRVLGVDHLRKVVAWARERGAVVAS 186 (364)
T ss_pred --EEEEc-CCCCCCCccCCHHHHHHHHHHHHHcCCEEEE
Confidence 33333 345777743 566678899987664
No 168
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=43.16 E-value=2.6e+02 Score=30.77 Aligned_cols=97 Identities=13% Similarity=0.126 Sum_probs=48.9
Q ss_pred EEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHH-HHH-HHHHhCCCceEEEechHHHHHhh----hccEEEEcc
Q 006577 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLL-RRLVRKGLSCTYTHINAISYIIH----EVTRVFLGA 530 (640)
Q Consensus 457 vILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~-~La-~eL~~~GI~vTlI~DsAv~~iM~----~VdkVlvGA 530 (640)
.|+|-+-+..+..+|......|. +|++. .|.+.+. .+. ..+...|+.+.++.......+.. +..+|++-
T Consensus 77 av~~~sG~~Ai~~~l~al~~~Gd--~Vi~~--~~~y~~t~~~~~~~~~~~G~~~~~vd~~d~e~l~~~i~~~tklV~le- 151 (391)
T TIGR01328 77 AVATSSGMGAIAATLLTILKAGD--HLISD--ECLYGCTFALLEHALTKFGIQVDFINMAIPEEVKAHIKDNTKIVYFE- 151 (391)
T ss_pred EEEECCHHHHHHHHHHHHhCCCC--EEEEe--cCcchHHHHHHHHHHhcCCeEEEEECCCCHHHHHHhhccCCeEEEEE-
Confidence 45444334444444444443443 45553 3555443 233 44566798888876443333333 33333321
Q ss_pred eeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 531 SSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 531 DaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
.-.-..|.++. --.|+-+|+++|++++|
T Consensus 152 ~p~Np~G~v~d---l~~I~~la~~~gi~liv 179 (391)
T TIGR01328 152 TPANPTMKLID---MERVCRDAHSQGVKVIV 179 (391)
T ss_pred CCCCCCCcccC---HHHHHHHHHHcCCEEEE
Confidence 11123444443 23466778999998887
No 169
>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.
Probab=43.14 E-value=4.3e+02 Score=27.95 Aligned_cols=98 Identities=16% Similarity=0.189 Sum_probs=47.7
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHH-HHHHH-hCCCceEEEechH-----HH---HHhh-hcc
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLL-LRRLV-RKGLSCTYTHINA-----IS---YIIH-EVT 524 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~L-a~eL~-~~GI~vTlI~DsA-----v~---~iM~-~Vd 524 (640)
.+++|.|.+..+..++....+.| -+|++.+ +.+.+..- ...+. ..|+++.++.... .. ..+. +..
T Consensus 64 ~v~~~~g~t~al~~~~~~~~~~g--d~vl~~~--~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~ 139 (376)
T TIGR01977 64 HVVFTNNATTALNIALKGLLKEG--DHVITTP--MEHNSVARPLECLKEQIGVEITIVKCDNEGLISPERIKRAIKTNTK 139 (376)
T ss_pred eEEEeCCHHHHHHHHHHhccCCC--CEEEECc--chhhHHHHHHHHHHHHcCcEEEEEecCCCCCcCHHHHHHhcCCCCe
Confidence 46666666666655555433333 4666654 33333221 12333 3488877765221 11 1222 223
Q ss_pred EEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 525 RVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 525 kVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
.|++ .+.-...|.+.. --.|+-+|++++++|+|
T Consensus 140 ~v~~-~~~~n~tG~~~~---~~~i~~l~~~~~~~liv 172 (376)
T TIGR01977 140 LIVV-SHASNVTGTILP---IEEIGELAQENGIFFIL 172 (376)
T ss_pred EEEE-ECCCCCccccCC---HHHHHHHHHHcCCEEEE
Confidence 3332 222223454443 23477788999988876
No 170
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=43.06 E-value=15 Score=38.33 Aligned_cols=39 Identities=21% Similarity=0.350 Sum_probs=22.0
Q ss_pred hhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEecccc
Q 006577 521 HEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAY 566 (640)
Q Consensus 521 ~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~aety 566 (640)
.++|.+++..|..+. +. ...+...+.+++||+|...+.+
T Consensus 183 ~~~da~~~~~~~~~~-----~~--~~~i~~~~~~~~iPv~~~~~~~ 221 (294)
T PF04392_consen 183 EKVDALYLLPDNLVD-----SN--FEAILQLANEAKIPVFGSSDFY 221 (294)
T ss_dssp TT-SEEEE-S-HHHH-----HT--HHHHHHHCCCTT--EEESSHHH
T ss_pred ccCCEEEEECCcchH-----hH--HHHHHHHHHhcCCCEEECCHHH
Confidence 468888887665432 22 2226678899999999875443
No 171
>PRK05968 hypothetical protein; Provisional
Probab=42.87 E-value=2.9e+02 Score=30.33 Aligned_cols=98 Identities=19% Similarity=0.177 Sum_probs=49.5
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchH-HHHH-HHHHhCCCceEEEech---HHHHHhhhccEEEEcc
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEG-KLLL-RRLVRKGLSCTYTHIN---AISYIIHEVTRVFLGA 530 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG-~~La-~eL~~~GI~vTlI~Ds---Av~~iM~~VdkVlvGA 530 (640)
..|++-+-+..+..+|....+.|. +|++.+ +.+.+ ..+. ..+...|+.+.++... .+-..+.+...|++-
T Consensus 80 ~av~~~sG~~Ai~~al~al~~~Gd--~Vl~~~--~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i~~tklV~ie- 154 (389)
T PRK05968 80 DARGFASGMAAISSTVLSFVEPGD--RIVAVR--HVYPDAFRLFETILKRMGVEVDYVDGRDEEAVAKALPGAKLLYLE- 154 (389)
T ss_pred cEEEECCHHHHHHHHHHHHhCCCC--EEEEeC--CCchHHHHHHHHHHHHcCceEEEeCCCCHHHHHHhcccCCEEEEE-
Confidence 445553333333334443334443 455544 44444 2333 4566779988887422 233334455555552
Q ss_pred eeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 531 SSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 531 DaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
. ..|-+....=-..++-+|+.|+++|+|
T Consensus 155 -~--pt~~~~~~~dl~~i~~la~~~gi~viv 182 (389)
T PRK05968 155 -S--PTSWVFELQDVAALAALAKRHGVVTMI 182 (389)
T ss_pred -C--CCCCCCcHHHHHHHHHHHHHcCCEEEE
Confidence 1 222222222233467788999998887
No 172
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=42.46 E-value=2.6e+02 Score=30.31 Aligned_cols=101 Identities=21% Similarity=0.247 Sum_probs=53.6
Q ss_pred CCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechH---------HHHHhh---
Q 006577 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA---------ISYIIH--- 521 (640)
Q Consensus 454 dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsA---------v~~iM~--- 521 (640)
+.++++|-|.+..+..++....+.|. .|++. .|.+.+... .+...|+.+.++.... +...+.
T Consensus 91 ~~~i~it~G~~~al~~~~~~~~~~gd--~vl~~--~p~y~~~~~--~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~ 164 (391)
T PRK07309 91 ENEILVTIGATEALSASLTAILEPGD--KVLLP--APAYPGYEP--IVNLVGAEIVEIDTTENDFVLTPEMLEKAILEQG 164 (391)
T ss_pred CCcEEEeCChHHHHHHHHHHhcCCCC--EEEEe--CCCCcchHH--HHHHcCCEEEEEecCCcCCcCCHHHHHHHhhccC
Confidence 35688888877777666665544333 45554 366666433 3334687777665321 111221
Q ss_pred -hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 522 -EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 522 -~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
++..|++- .---..|.+++..--..++-+|+.|++++++
T Consensus 165 ~~~~~i~l~-~P~NPtG~~~s~~~~~~l~~~~~~~~~~ii~ 204 (391)
T PRK07309 165 DKLKAVILN-YPANPTGVTYSREQIKALADVLKKYDIFVIS 204 (391)
T ss_pred CCeEEEEEE-CCCCCCCcCcCHHHHHHHHHHHHHcCcEEEE
Confidence 23344431 0001224444443345567788999988876
No 173
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=42.10 E-value=1e+02 Score=31.13 Aligned_cols=76 Identities=24% Similarity=0.303 Sum_probs=44.7
Q ss_pred EEEeecCcHHHHHHHHHHHHcCCeeEEEEc-CCCCCchHHHHHHHHHhCCCceEEEe----------chHHHHHhh--hc
Q 006577 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIV-DSRPKHEGKLLLRRLVRKGLSCTYTH----------INAISYIIH--EV 523 (640)
Q Consensus 457 vILT~g~SstV~~vL~~A~e~Gk~f~ViV~-ESRP~~eG~~La~eL~~~GI~vTlI~----------DsAv~~iM~--~V 523 (640)
.||.-|+++....++...++.+....|.++ --++...+ .....+.||+|..+. |..+...++ ++
T Consensus 5 ~vl~sg~gs~~~~ll~~~~~~~~~~~I~~vvs~~~~~~~---~~~a~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 81 (200)
T PRK05647 5 VVLASGNGSNLQAIIDACAAGQLPAEIVAVISDRPDAYG---LERAEAAGIPTFVLDHKDFPSREAFDAALVEALDAYQP 81 (200)
T ss_pred EEEEcCCChhHHHHHHHHHcCCCCcEEEEEEecCccchH---HHHHHHcCCCEEEECccccCchhHhHHHHHHHHHHhCc
Confidence 466667788888777776655545555433 33344433 345567799998865 233344454 68
Q ss_pred cEEEE-cceeEec
Q 006577 524 TRVFL-GASSVLS 535 (640)
Q Consensus 524 dkVlv-GADaIla 535 (640)
|.+|+ |-..|+.
T Consensus 82 D~iv~~~~~~ii~ 94 (200)
T PRK05647 82 DLVVLAGFMRILG 94 (200)
T ss_pred CEEEhHHhhhhCC
Confidence 87766 3334443
No 174
>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=41.63 E-value=1.5e+02 Score=31.74 Aligned_cols=94 Identities=15% Similarity=0.038 Sum_probs=55.7
Q ss_pred ccCCCEEEeecCcHHHHHHHHHH-HHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHh-hhccEEEEc
Q 006577 452 IRDGDVLLTYGSSSAVEMILQHA-HELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYII-HEVTRVFLG 529 (640)
Q Consensus 452 I~dgdvILT~g~SstV~~vL~~A-~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM-~~VdkVlvG 529 (640)
+...++++|.|.+..+..++... .+.|. .|++ + .|.+.+.... +...|..+..+.|- ..+- .+...|++
T Consensus 78 ~~~~~I~it~G~~~~i~~~~~~l~~~~gd--~Vl~-~-~p~y~~~~~~--~~~~g~~~~~v~~~--~~l~~~~~~~v~~- 148 (357)
T TIGR03539 78 LDPTAVLPVIGTKELVAWLPTLLGLGPGD--TVVI-P-ELAYPTYEVG--ALLAGATPVAADDP--TELDPVGPDLIWL- 148 (357)
T ss_pred CCcCeEEEccChHHHHHHHHHHHcCCCCC--EEEE-C-CCCcHHHHHH--HHhcCCEEeccCCh--hhcCccCccEEEE-
Confidence 55568899999888877666544 23342 4444 3 6776665543 33467777766431 1111 12333333
Q ss_pred ceeEecCCCeecccchH-------HHHHHHhhCCCcEEE
Q 006577 530 ASSVLSNGTVCSRVGTA-------CVAMVAYGFHIPVLV 561 (640)
Q Consensus 530 ADaIlaNG~VvNKiGT~-------~lAlaAk~~~VPVyV 561 (640)
+ ...|..|+. .++-+|++|++.+++
T Consensus 149 ------~-~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~ 180 (357)
T TIGR03539 149 ------N-SPGNPTGRVLSVDELRAIVAWARERGAVVAS 180 (357)
T ss_pred ------e-CCCCCcCccCCHHHHHHHHHHHHHcCeEEEE
Confidence 2 366777753 366778999998886
No 175
>TIGR02429 pcaI_scoA_fam 3-oxoacid CoA-transferase, A subunit. Various members of this family are characterized as the A subunits of succinyl-CoA:3-ketoacid-CoA transferase (EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase (EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase (EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase (EC 2.8.3.9). This represents a very distinct clade with strong sequence conservation within the larger family defined by Pfam model pfam01144. The B subunit represents a different clade in pfam01144, described by TIGR02428. The two are found in general as tandem genes and occasionally as a fusion.
Probab=41.28 E-value=2e+02 Score=29.76 Aligned_cols=97 Identities=20% Similarity=0.282 Sum_probs=56.0
Q ss_pred HHHHhccCCCEEEeecCc--HHHHHHHHHHHHcC-CeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhc
Q 006577 447 HAVTKIRDGDVLLTYGSS--SAVEMILQHAHELG-KQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEV 523 (640)
Q Consensus 447 ~a~~~I~dgdvILT~g~S--stV~~vL~~A~e~G-k~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~V 523 (640)
.|+.+|+||++|..=|+. +.-..++....++| +++++|-........| ...|...|. |
T Consensus 11 eAv~~I~DG~ti~~gGf~~~~~P~ali~~l~r~~~~~Ltlv~~~~g~~~~g---~~~L~~~G~----------------V 71 (222)
T TIGR02429 11 EAVSVIPDGATIMIGGFGTAGQPFELIDALIDTGAKDLTIVSNNAGNGEIG---LAALLKAGQ----------------V 71 (222)
T ss_pred HHHhhCCCCCEEEECCcCCccCcHHHHHHHHhcCCCCcEEEecCCCCCCcc---HHHHHhCCC----------------E
Confidence 355689999999987654 44555666666666 5688887543222122 233444442 2
Q ss_pred cEEEEcc---------eeEecCCCe---ecccchHHHHHHHhhCCCcEEEe
Q 006577 524 TRVFLGA---------SSVLSNGTV---CSRVGTACVAMVAYGFHIPVLVC 562 (640)
Q Consensus 524 dkVlvGA---------DaIlaNG~V---vNKiGT~~lAlaAk~~~VPVyV~ 562 (640)
.+++.|- ...+.+|.+ ...-||+.-.+-|-..|+|++..
T Consensus 72 kr~i~s~~~~~~~~~~~~~~~~g~ie~~~~p~g~l~~~lrA~a~G~P~~~t 122 (222)
T TIGR02429 72 RKLICSFPRQSDSYVFDELYRAGKIELELVPQGTLAERIRAAGAGLGAFFT 122 (222)
T ss_pred eEEEccccCCCCCHHHHHHHHcCCeEEEECCHHHHHHHHHHHHCCCCceee
Confidence 3332220 011112222 12678888889999999998864
No 176
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=41.18 E-value=2.4e+02 Score=30.48 Aligned_cols=94 Identities=16% Similarity=0.112 Sum_probs=52.6
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEec---h-------HHHHHh-hhcc
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI---N-------AISYII-HEVT 524 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D---s-------Av~~iM-~~Vd 524 (640)
.+++|.|.+..+..+++...+.|....|++. .|.+.+.... ....|+++..+.. + .+-..+ +++.
T Consensus 92 ~i~it~Ga~~al~~~~~~l~~~gd~~~vlv~--~P~y~~~~~~--~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k 167 (393)
T TIGR03538 92 HVLPVNGTREALFAFAQAVINPGQAPLVVMP--NPFYQIYEGA--ALLAGAEPYFLNCTAENGFLPDFDAVPESVWRRCQ 167 (393)
T ss_pred eEEECCCcHHHHHHHHHHHcCCCCcceEEec--CCCCcchHHH--HHhcCCeEEEeeccccCCCCCCHHHHHHHHhhcce
Confidence 4677888888777776666555544334443 5777665543 3346776666542 1 111111 2344
Q ss_pred EEEEcceeEecCCCeecccch-------HHHHHHHhhCCCcEEE
Q 006577 525 RVFLGASSVLSNGTVCSRVGT-------ACVAMVAYGFHIPVLV 561 (640)
Q Consensus 525 kVlvGADaIlaNG~VvNKiGT-------~~lAlaAk~~~VPVyV 561 (640)
.|++ + +--|.+|+ ..++-+|+.|++.+++
T Consensus 168 ~i~l-------~-~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~ 203 (393)
T TIGR03538 168 LLFV-------C-SPGNPTGAVLSLDTLKKLIELADQYGFIIAS 203 (393)
T ss_pred EEEE-------e-CCCCCcCcccCHHHHHHHHHHHHHCCEEEEE
Confidence 4444 2 23456664 5567778888876553
No 177
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=41.08 E-value=1.4e+02 Score=29.93 Aligned_cols=70 Identities=26% Similarity=0.327 Sum_probs=42.9
Q ss_pred EEEeecCcHHHHHHHHHHHHcCCeeEEEE-cCCCCCchHHHHHHHHHhCCCceEEEe----------chHHHHHhh--hc
Q 006577 457 VLLTYGSSSAVEMILQHAHELGKQFRVVI-VDSRPKHEGKLLLRRLVRKGLSCTYTH----------INAISYIIH--EV 523 (640)
Q Consensus 457 vILT~g~SstV~~vL~~A~e~Gk~f~ViV-~ESRP~~eG~~La~eL~~~GI~vTlI~----------DsAv~~iM~--~V 523 (640)
.||.-|+++....+|....+.+....|.+ +-.+|..++. ....+.||++.++. |..+...++ ++
T Consensus 4 ail~sg~gs~~~~ll~~~~~~~l~~~I~~vi~~~~~~~~~---~~A~~~gip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (190)
T TIGR00639 4 VVLISGNGSNLQAIIDACKEGKIPASVVLVISNKPDAYGL---ERAAQAGIPTFVLSLKDFPSREAFDQAIIEELRAHEV 80 (190)
T ss_pred EEEEcCCChhHHHHHHHHHcCCCCceEEEEEECCccchHH---HHHHHcCCCEEEECccccCchhhhhHHHHHHHHhcCC
Confidence 46666778888877777765555555543 3445555443 44566799988755 223444454 58
Q ss_pred cEEEEc
Q 006577 524 TRVFLG 529 (640)
Q Consensus 524 dkVlvG 529 (640)
|.+|+-
T Consensus 81 D~iv~~ 86 (190)
T TIGR00639 81 DLVVLA 86 (190)
T ss_pred CEEEEe
Confidence 887664
No 178
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=40.84 E-value=62 Score=36.57 Aligned_cols=82 Identities=10% Similarity=0.052 Sum_probs=46.2
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCC--CceEEEechHHHHHhh--hccEEEEcce
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKG--LSCTYTHINAISYIIH--EVTRVFLGAS 531 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~G--I~vTlI~DsAv~~iM~--~VdkVlvGAD 531 (640)
.+||..+++.....+++.|++.|....++..+..+...+.+++.+....| ..-.|+....+-.+.+ ++|.|+-|..
T Consensus 3 ~kvLi~~~geia~~ii~a~~~~Gi~~v~v~~~~d~~a~~~~~aD~~~~i~~~~~~~y~d~~~i~~~a~~~~~D~I~pg~g 82 (472)
T PRK07178 3 KKILIANRGEIAVRIVRACAEMGIRSVAIYSEADRHALHVKRADEAYSIGADPLAGYLNPRRLVNLAVETGCDALHPGYG 82 (472)
T ss_pred cEEEEECCcHHHHHHHHHHHHcCCeEEEEeCCCccCCccHhhCCEEEEcCCCchhhhcCHHHHHHHHHHHCCCEEEeCCC
Confidence 37999999999999999999887554444444333334444442211111 0112333334444443 6888887764
Q ss_pred eEecCC
Q 006577 532 SVLSNG 537 (640)
Q Consensus 532 aIlaNG 537 (640)
-+..|.
T Consensus 83 ~lse~~ 88 (472)
T PRK07178 83 FLSENA 88 (472)
T ss_pred CcccCH
Confidence 444443
No 179
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=40.72 E-value=78 Score=34.53 Aligned_cols=65 Identities=17% Similarity=0.105 Sum_probs=45.8
Q ss_pred EEEeecCc-HHHHHHHHHHHHcCCeeEEEEcCCCCCchH--HHHHHHHHhCCCceEEEechHHHHHhh
Q 006577 457 VLLTYGSS-SAVEMILQHAHELGKQFRVVIVDSRPKHEG--KLLLRRLVRKGLSCTYTHINAISYIIH 521 (640)
Q Consensus 457 vILT~g~S-stV~~vL~~A~e~Gk~f~ViV~ESRP~~eG--~~La~eL~~~GI~vTlI~DsAv~~iM~ 521 (640)
.|.|||+- ..++..+..|++.|....+.+..+...-.. .++++.+.+.|.++.||+|++-.....
T Consensus 105 ri~~~~~e~d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~ 172 (333)
T TIGR03217 105 RVATHCTEADVSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESYGADCVYIVDSAGAMLPD 172 (333)
T ss_pred EEEeccchHHHHHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHhcCCCEEEEccCCCCCCHH
Confidence 47777653 457778888888888777777776544333 344577888899999999987554433
No 180
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=40.49 E-value=1.6e+02 Score=33.41 Aligned_cols=90 Identities=22% Similarity=0.268 Sum_probs=53.1
Q ss_pred ccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEcce
Q 006577 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGAS 531 (640)
Q Consensus 452 I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGAD 531 (640)
+..|..|+.+|...+=+..++.++..| .+|++.|.++. + ...|.+.|+.+....+ . ...+..+|.||+..=
T Consensus 9 ~~~~~~v~V~G~G~sG~aa~~~L~~~G--~~v~~~D~~~~----~-~~~l~~~g~~~~~~~~-~-~~~l~~~D~VV~SpG 79 (488)
T PRK03369 9 LLPGAPVLVAGAGVTGRAVLAALTRFG--ARPTVCDDDPD----A-LRPHAERGVATVSTSD-A-VQQIADYALVVTSPG 79 (488)
T ss_pred ccCCCeEEEEcCCHHHHHHHHHHHHCC--CEEEEEcCCHH----H-HHHHHhCCCEEEcCcc-h-HhHhhcCCEEEECCC
Confidence 345788999888766555555566556 57888887653 1 3346677885532212 1 234567787766531
Q ss_pred eEecCCCeecccchHHHHHHHhhCCCcEE
Q 006577 532 SVLSNGTVCSRVGTACVAMVAYGFHIPVL 560 (640)
Q Consensus 532 aIlaNG~VvNKiGT~~lAlaAk~~~VPVy 560 (640)
|-. ...+-..|+..+|||+
T Consensus 80 -i~~---------~~p~~~~a~~~gi~v~ 98 (488)
T PRK03369 80 -FRP---------TAPVLAAAAAAGVPIW 98 (488)
T ss_pred -CCC---------CCHHHHHHHHCCCcEe
Confidence 211 2345556677777777
No 181
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=40.37 E-value=2.5e+02 Score=29.77 Aligned_cols=99 Identities=17% Similarity=0.060 Sum_probs=55.0
Q ss_pred ccCC-CEEEeecCcHHHHHHHHHHHHcCC-eeEEEEcCCCCCchHHHHHHHHHhCCCceEEEech-H---------HHHH
Q 006577 452 IRDG-DVLLTYGSSSAVEMILQHAHELGK-QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN-A---------ISYI 519 (640)
Q Consensus 452 I~dg-dvILT~g~SstV~~vL~~A~e~Gk-~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds-A---------v~~i 519 (640)
+..+ .+|+|.|.+..+..++......|. .-.|++. .|.+.+...+ +...|+.+..+... . +-..
T Consensus 57 ~~~~~~Iiit~Gs~~ai~~~~~~~~~~g~~~d~Vl~~--~p~y~~~~~~--~~~~g~~~~~v~~~~~~~~~~d~~~l~~~ 132 (350)
T TIGR03537 57 LDPDAQVLPSAGSKEAIFHFPLVFIDPEEDRRRVIFG--TPGYPVYERG--ALFAGGEPTAVKLKKEDGFLLRLEKVEKS 132 (350)
T ss_pred CCCCCcEEEcCChHHHHHHHHHHHcCCCCCCceEEEc--CCCCcchHHH--HHhcCCEEEEcccCcccCCccCHHHHHHh
Confidence 3344 789999988887776665544442 1244444 5777665444 34478777766432 1 1112
Q ss_pred hhhccEEEEcceeEecCCCeecccch-------HHHHHHHhhCCCcEEE
Q 006577 520 IHEVTRVFLGASSVLSNGTVCSRVGT-------ACVAMVAYGFHIPVLV 561 (640)
Q Consensus 520 M~~VdkVlvGADaIlaNG~VvNKiGT-------~~lAlaAk~~~VPVyV 561 (640)
+.+-.++ |+-+ ..-|..|+ ..++-+|+.|++.+++
T Consensus 133 ~~~~~~~------i~i~-~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~ 174 (350)
T TIGR03537 133 ILEETKI------VWIN-YPHNPTGATAPRSYLKETIAMCREHGIILCS 174 (350)
T ss_pred hhhccEE------EEEe-CCCCCcCcccCHHHHHHHHHHHHHcCcEEEE
Confidence 2221222 2212 13477773 4466678899987775
No 182
>PLN02214 cinnamoyl-CoA reductase
Probab=40.33 E-value=2.1e+02 Score=30.57 Aligned_cols=107 Identities=20% Similarity=0.130 Sum_probs=59.3
Q ss_pred CCCEEEeecCcHHHHH-HHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEe-c----hHHHHHhhhccEEE
Q 006577 454 DGDVLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-I----NAISYIIHEVTRVF 527 (640)
Q Consensus 454 dgdvILT~g~SstV~~-vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~-D----sAv~~iM~~VdkVl 527 (640)
.+.+||..|.++.+-. ++..+.++|. +|+++.-.+..........|...+-.++++. | ..+..+|+.+|.||
T Consensus 9 ~~~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vi 86 (342)
T PLN02214 9 AGKTVCVTGAGGYIASWIVKILLERGY--TVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVF 86 (342)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEE
Confidence 3567888888876654 4455666664 4554432222111111223332111344432 2 34566778899888
Q ss_pred EcceeEecCC---CeecccchHHHHHHHhhCCCcEEEe
Q 006577 528 LGASSVLSNG---TVCSRVGTACVAMVAYGFHIPVLVC 562 (640)
Q Consensus 528 vGADaIlaNG---~VvNKiGT~~lAlaAk~~~VPVyV~ 562 (640)
--|-....+- .-.|-.||..+.-+|+.+++.-+|.
T Consensus 87 h~A~~~~~~~~~~~~~nv~gt~~ll~aa~~~~v~r~V~ 124 (342)
T PLN02214 87 HTASPVTDDPEQMVEPAVNGAKFVINAAAEAKVKRVVI 124 (342)
T ss_pred EecCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 8774332111 1136789999998999899864443
No 183
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=40.26 E-value=1.2e+02 Score=33.09 Aligned_cols=103 Identities=17% Similarity=0.159 Sum_probs=66.7
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEcc--eeE
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA--SSV 533 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGA--DaI 533 (640)
|..+.+=-...+...+.+|.+.|.+.-|++.|.-|...+.++.+.+. ..-.+.+|=-|..+.+-+.. ..+|. ..+
T Consensus 90 D~avI~VPa~~v~dai~Ea~~aGI~~~ViiteGfpe~d~~~l~~~~~-~~~g~rliGPNc~Gii~p~~--~~~gi~p~~~ 166 (317)
T PTZ00187 90 DASVIYVPPPHAASAIIEAIEAEIPLVVCITEGIPQHDMVKVKHALL-SQNKTRLIGPNCPGIIKPGE--CKIGIMPGHI 166 (317)
T ss_pred CEEEEecCHHHHHHHHHHHHHcCCCEEEEECCCCchhhHHHHHHHHh-hcCCCEEECCCCceEEcchh--hccccCCcCC
Confidence 56666667778889999999999999999999999988877774443 22233555555555444432 12222 123
Q ss_pred ecCC--CeecccchHHHHHH--HhhCCCcEEE
Q 006577 534 LSNG--TVCSRVGTACVAMV--AYGFHIPVLV 561 (640)
Q Consensus 534 laNG--~VvNKiGT~~lAla--Ak~~~VPVyV 561 (640)
+.-| +++++.||+...++ +...++-+--
T Consensus 167 ~~~G~VgiVSqSGtl~~ei~~~~~~~GlG~S~ 198 (317)
T PTZ00187 167 HKKGKIGIVSRSGTLTYEAVAQTTAVGLGQST 198 (317)
T ss_pred CCCCCEEEEeCCHHHHHHHHHHHHHcCCCEEE
Confidence 3345 57899997766654 5555655543
No 184
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=40.16 E-value=3.2e+02 Score=28.23 Aligned_cols=95 Identities=19% Similarity=0.144 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEE-eecCcHHHHHHHHHHHHcCCeeEEEEcC--------CCCC------
Q 006577 427 SDIERFINEKIILADRVIVKHAVTKIRDGDVLL-TYGSSSAVEMILQHAHELGKQFRVVIVD--------SRPK------ 491 (640)
Q Consensus 427 e~Id~fi~E~i~~A~~~Ia~~a~~~I~dgdvIL-T~g~SstV~~vL~~A~e~Gk~f~ViV~E--------SRP~------ 491 (640)
+..+.+.+|.+..+.+.|.+. .|.+++ =.|.|+.|-+-|..-. .--.+.+|++- ....
T Consensus 18 ~~~~~~~~~~~~~a~~~i~~~------~gkv~V~G~GkSG~Igkk~Aa~L-~s~G~~a~fv~p~ea~hgdlg~i~~~Dvv 90 (202)
T COG0794 18 ELAERLDDEDFVRAVELILEC------KGKVFVTGVGKSGLIGKKFAARL-ASTGTPAFFVGPAEALHGDLGMITPGDVV 90 (202)
T ss_pred HHHHhcCHHHHHHHHHHHHhc------CCcEEEEcCChhHHHHHHHHHHH-HccCCceEEecCchhccCCccCCCCCCEE
Confidence 333333334455566655543 344433 3678988766553211 12345666653 1111
Q ss_pred ------chHH---HHHHHHHhCCCceEEEechHHHHHhhhccEEEE
Q 006577 492 ------HEGK---LLLRRLVRKGLSCTYTHINAISYIIHEVTRVFL 528 (640)
Q Consensus 492 ------~eG~---~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlv 528 (640)
.|-. .++..+.+.|+++.-|+-+-=+.+-+..|.||.
T Consensus 91 iaiS~SGeT~el~~~~~~aK~~g~~liaiT~~~~SsLak~aDvvl~ 136 (202)
T COG0794 91 IAISGSGETKELLNLAPKAKRLGAKLIAITSNPDSSLAKAADVVLV 136 (202)
T ss_pred EEEeCCCcHHHHHHHHHHHHHcCCcEEEEeCCCCChHHHhcCeEEE
Confidence 1222 334788899999999887766666677777765
No 185
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=40.09 E-value=4e+02 Score=28.27 Aligned_cols=98 Identities=16% Similarity=0.149 Sum_probs=49.7
Q ss_pred EEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEec--------hHHHHHhhh-cc-EE
Q 006577 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--------NAISYIIHE-VT-RV 526 (640)
Q Consensus 457 vILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D--------sAv~~iM~~-Vd-kV 526 (640)
+++|-+-+..+..++......|. +|+|... ..-|.++...+...|+++.++.. ..+..++.. .+ ++
T Consensus 57 i~~t~~~t~al~~~~~~l~~~~~--~vlv~~~--~~~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~ 132 (363)
T TIGR02326 57 VLLQGSGTFAVEAVIGSAVPKDG--KLLVVIN--GAYGARIVQIAEYLGIPHHVVDTGEVEPPDVVEVEAILAADPAITH 132 (363)
T ss_pred EEEcCCCHHHHHHHHHhcCCCCC--eEEEEeC--ChhhHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHhhCCCccE
Confidence 44554545555656655544332 3343321 22244444445567888887753 233344432 11 22
Q ss_pred EEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 527 FLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 527 lvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
+.-++.=...|.+ +.+ ..|+-+|+.|+++++|
T Consensus 133 v~~~~~~~~tG~~-~~i--~~I~~l~~~~g~~liv 164 (363)
T TIGR02326 133 IALVHCETTTGIL-NPI--EAVAKLAHRHGKVTIV 164 (363)
T ss_pred EEEEeecCCcccc-CcH--HHHHHHHHHcCCEEEE
Confidence 3333333335543 333 5688889999987766
No 186
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=40.09 E-value=98 Score=29.78 Aligned_cols=30 Identities=13% Similarity=0.238 Sum_probs=13.7
Q ss_pred EEeecCcHHHHHHHHHHHHcCCeeEEEEcC
Q 006577 458 LLTYGSSSAVEMILQHAHELGKQFRVVIVD 487 (640)
Q Consensus 458 ILT~g~SstV~~vL~~A~e~Gk~f~ViV~E 487 (640)
|-||.....+..+|....++...++|+|++
T Consensus 3 Ip~~Ne~~~l~~~l~sl~~~~~~~eIivvd 32 (191)
T cd06436 3 VPCLNEEAVIQRTLASLLRNKPNFLVLVID 32 (191)
T ss_pred EeccccHHHHHHHHHHHHhCCCCeEEEEEE
Confidence 334444444444554444433345555544
No 187
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=39.83 E-value=71 Score=34.55 Aligned_cols=72 Identities=14% Similarity=0.143 Sum_probs=46.5
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhh--hccEEEEcceeE
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIH--EVTRVFLGASSV 533 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~--~VdkVlvGADaI 533 (640)
.+||..|.+.....++..+++. .++|++++..|...|..++... +.+-+....++..+.+ ++|.|+.+.+.+
T Consensus 13 ~~ilIiG~g~~~~~~~~a~~~~--G~~v~~~~~~~~~~~~~~ad~~----~~~~~~d~~~l~~~~~~~~id~vi~~~e~~ 86 (395)
T PRK09288 13 TRVMLLGSGELGKEVAIEAQRL--GVEVIAVDRYANAPAMQVAHRS----HVIDMLDGDALRAVIEREKPDYIVPEIEAI 86 (395)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCCCCchHHhhhhe----EECCCCCHHHHHHHHHHhCCCEEEEeeCcC
Confidence 4899999887777777777765 5788999999987776654321 1111111134444555 688888887654
No 188
>PRK07683 aminotransferase A; Validated
Probab=39.69 E-value=2.8e+02 Score=29.98 Aligned_cols=93 Identities=22% Similarity=0.283 Sum_probs=51.4
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechH---------HHHHhhhccEE
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA---------ISYIIHEVTRV 526 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsA---------v~~iM~~VdkV 526 (640)
++++|.|.+..+..++....+.|. +|++ ..|.+.+...+. ...|+++.++.... +...+..-+++
T Consensus 91 ~I~~t~G~~~al~~~~~~l~~~gd--~Vl~--~~p~y~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 164 (387)
T PRK07683 91 EIIVTIGASEAIDIAFRTILEPGT--EVIL--PAPIYPGYEPII--RLCGAKPVFIDTRSTGFRLTAEALENAITEKTRC 164 (387)
T ss_pred cEEEeCChHHHHHHHHHHhCCCCC--EEEE--cCCCccchHHHH--HHcCCEEEEeecCcccCCCCHHHHHHhcCcCceE
Confidence 688888888776666655544443 4444 356666544432 34688887775322 22222222222
Q ss_pred EEcceeEecCCCeecccch-------HHHHHHHhhCCCcEEE
Q 006577 527 FLGASSVLSNGTVCSRVGT-------ACVAMVAYGFHIPVLV 561 (640)
Q Consensus 527 lvGADaIlaNG~VvNKiGT-------~~lAlaAk~~~VPVyV 561 (640)
++ | . ..-|..|+ ..++-+|+.+++.+++
T Consensus 165 i~----i-~--~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~ 199 (387)
T PRK07683 165 VV----L-P--YPSNPTGVTLSKEELQDIADVLKDKNIFVLS 199 (387)
T ss_pred EE----E-e--CCCCCCCcCCCHHHHHHHHHHHHHcCeEEEE
Confidence 21 1 1 22355555 4567788889987664
No 189
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=39.61 E-value=2.4e+02 Score=31.28 Aligned_cols=98 Identities=14% Similarity=0.093 Sum_probs=50.3
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchH-HHHH-HHHHhCCCceEEEech---HHHHHhh-hccEEEEc
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEG-KLLL-RRLVRKGLSCTYTHIN---AISYIIH-EVTRVFLG 529 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG-~~La-~eL~~~GI~vTlI~Ds---Av~~iM~-~VdkVlvG 529 (640)
.+|+|.|-+..+..++....+.|. +|++. .|.+.| ..+. ..+...|+.++++... .+...+. +...|++.
T Consensus 70 ~ivvt~gg~~Ai~~~l~all~~Gd--~Il~~--~~~y~~~~~~~~~~~~~~gi~v~~vd~~d~e~l~~~i~~~tklV~le 145 (388)
T PRK08861 70 GAVVTNCGTSALNLWVSALLGPDD--LIVAP--HDCYGGTYRLFNTRANKGDFKVQFVDQSDAAALDAALAKKPKLILLE 145 (388)
T ss_pred eEEEECCHHHHHHHHHHHHcCCCC--EEEEc--CCchHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHhcCcCCeEEEEE
Confidence 455555544555555544444343 45543 466665 3333 3344567888887522 2323332 44555543
Q ss_pred ceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 530 ADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
.---..|.++.. ..|+-+|+.++++|+|
T Consensus 146 -sP~NPtG~v~dl---~~I~~la~~~gi~vIv 173 (388)
T PRK08861 146 -TPSNPLVRVVDI---AELCQKAKAVGALVAV 173 (388)
T ss_pred -CCCCCCCcccCH---HHHHHHHHHcCCEEEE
Confidence 111223444432 3567788889987765
No 190
>PRK07503 methionine gamma-lyase; Provisional
Probab=39.43 E-value=3.1e+02 Score=30.32 Aligned_cols=97 Identities=19% Similarity=0.196 Sum_probs=50.3
Q ss_pred EEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHH-HHH-HHHHhCCCceEEEech---HHHHHhh-hccEEEEcc
Q 006577 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLL-RRLVRKGLSCTYTHIN---AISYIIH-EVTRVFLGA 530 (640)
Q Consensus 457 vILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~-~La-~eL~~~GI~vTlI~Ds---Av~~iM~-~VdkVlvGA 530 (640)
.|++-+-+..+..+|......|. +|++. .|.+.+. .+. ..+...|+.+..+... .+...+. +...|++ .
T Consensus 83 ~i~~~sG~~Al~~~l~~ll~~Gd--~Viv~--~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i~~~tklV~l-e 157 (403)
T PRK07503 83 AVALASGMGAITATLWTLLRPGD--EVIVD--QTLYGCTFAFLHHGLGEFGVTVRHVDLTDPAALKAAISDKTRMVYF-E 157 (403)
T ss_pred EEEEcCHHHHHHHHHHHHcCCCC--EEEEc--cCccchHHHHHHHHHhhCCEEEEEeCCCCHHHHHHhcCccCcEEEE-e
Confidence 45544333444444444433443 56653 3444332 222 4566789988887532 2333332 4445544 2
Q ss_pred eeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 531 SSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 531 DaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
.-.-..|.+.. --.|+-+|+.++++++|
T Consensus 158 ~p~NPtG~~~d---i~~I~~la~~~gi~lIv 185 (403)
T PRK07503 158 TPANPNMRLVD---IAAVAEIAHGAGAKVVV 185 (403)
T ss_pred CCCCCCCeeeC---HHHHHHHHHHcCCEEEE
Confidence 22223454443 25677788999998877
No 191
>PRK13566 anthranilate synthase; Provisional
Probab=39.19 E-value=1e+02 Score=37.31 Aligned_cols=80 Identities=19% Similarity=0.239 Sum_probs=50.0
Q ss_pred cCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHh--hhccEEEE-cceeEecCCCeecccchHHHHHHHh
Q 006577 477 LGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYII--HEVTRVFL-GASSVLSNGTVCSRVGTACVAMVAY 553 (640)
Q Consensus 477 ~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM--~~VdkVlv-GADaIlaNG~VvNKiGT~~lAlaAk 553 (640)
.|+..+|.|+|-...+ -..+++.|.+.|++|+++........+ .++|.||| |- .|+ .+..+...+--.|.
T Consensus 523 ~~~g~~IlvID~~dsf-~~~l~~~Lr~~G~~v~vv~~~~~~~~~~~~~~DgVVLsgG-----pgs-p~d~~~~~lI~~a~ 595 (720)
T PRK13566 523 VGEGKRVLLVDHEDSF-VHTLANYFRQTGAEVTTVRYGFAEEMLDRVNPDLVVLSPG-----PGR-PSDFDCKATIDAAL 595 (720)
T ss_pred CCCCCEEEEEECCCch-HHHHHHHHHHCCCEEEEEECCCChhHhhhcCCCEEEECCC-----CCC-hhhCCcHHHHHHHH
Confidence 3556688888877544 336779999999999998865432332 25788766 21 111 12234444444555
Q ss_pred hCCCcEEEec
Q 006577 554 GFHIPVLVCC 563 (640)
Q Consensus 554 ~~~VPVyV~a 563 (640)
..++||+-+|
T Consensus 596 ~~~iPILGIC 605 (720)
T PRK13566 596 ARNLPIFGVC 605 (720)
T ss_pred HCCCcEEEEe
Confidence 6799999655
No 192
>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed
Probab=38.98 E-value=3.3e+02 Score=30.09 Aligned_cols=74 Identities=22% Similarity=0.150 Sum_probs=37.9
Q ss_pred EEEEcCCCCCchHHHHH--HHHHhCCCceEEEech---HHHHHhh-hccEEEEcceeEecCCCeecccchHHHHHHHhhC
Q 006577 482 RVVIVDSRPKHEGKLLL--RRLVRKGLSCTYTHIN---AISYIIH-EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGF 555 (640)
Q Consensus 482 ~ViV~ESRP~~eG~~La--~eL~~~GI~vTlI~Ds---Av~~iM~-~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~ 555 (640)
+|++. .|.+.|.... ..+...|++++.+... .+...+. +...|++ ..---..|.++. --.|+-+|+++
T Consensus 106 ~Vl~~--~~~y~~~~~~~~~~~~~~G~~v~~vd~~d~e~l~~ai~~~tklV~l-esp~NptG~v~d---l~~I~~la~~~ 179 (398)
T PRK07504 106 HVVAA--RALFGSCRYVVETLLPRYGIESTLVDGLDLDNWEKAVRPNTKVFFL-ESPTNPTLEVID---IAAVAKIANQA 179 (398)
T ss_pred EEEEc--CCchhHHHHHHHHHHhhcCeEEEEECCCCHHHHHHhcCcCceEEEE-ECCCCCCcEecC---HHHHHHHHHHc
Confidence 45554 3566665443 2344568877776422 2222232 3333333 222223354443 35667778888
Q ss_pred CCcEEE
Q 006577 556 HIPVLV 561 (640)
Q Consensus 556 ~VPVyV 561 (640)
+++++|
T Consensus 180 gi~lvv 185 (398)
T PRK07504 180 GAKLVV 185 (398)
T ss_pred CCEEEE
Confidence 988776
No 193
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=38.28 E-value=1.4e+02 Score=33.62 Aligned_cols=108 Identities=14% Similarity=0.105 Sum_probs=61.2
Q ss_pred CCCEEEeecCcHHHHH-HHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEccee
Q 006577 454 DGDVLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASS 532 (640)
Q Consensus 454 dgdvILT~g~SstV~~-vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGADa 532 (640)
...+||..|-++.|-. ++..+.++| .+|++++.........+ ..+.. ...+.++.-......+.++|.||--|-.
T Consensus 119 ~~mkILVTGatGFIGs~Lv~~Ll~~G--~~V~~ldr~~~~~~~~~-~~~~~-~~~~~~~~~Di~~~~~~~~D~ViHlAa~ 194 (436)
T PLN02166 119 KRLRIVVTGGAGFVGSHLVDKLIGRG--DEVIVIDNFFTGRKENL-VHLFG-NPRFELIRHDVVEPILLEVDQIYHLACP 194 (436)
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCC--CEEEEEeCCCCccHhHh-hhhcc-CCceEEEECccccccccCCCEEEECcee
Confidence 3468999999987755 445455555 56777764322111111 11211 1234444433333345678888877632
Q ss_pred EecCCC--------eecccchHHHHHHHhhCCCcEEEeccc
Q 006577 533 VLSNGT--------VCSRVGTACVAMVAYGFHIPVLVCCEA 565 (640)
Q Consensus 533 IlaNG~--------VvNKiGT~~lAlaAk~~~VPVyV~aet 565 (640)
...... -.|-.||..+.-+|+.+++.|+.+.-.
T Consensus 195 ~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~r~V~~SS~ 235 (436)
T PLN02166 195 ASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGARFLLTSTS 235 (436)
T ss_pred ccchhhccCHHHHHHHHHHHHHHHHHHHHHhCCEEEEECcH
Confidence 211111 167889999999999999977665443
No 194
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=38.25 E-value=4.4e+02 Score=29.43 Aligned_cols=112 Identities=16% Similarity=0.098 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCC--CCCchHHHHHHHHHhCCCce
Q 006577 431 RFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDS--RPKHEGKLLLRRLVRKGLSC 508 (640)
Q Consensus 431 ~fi~E~i~~A~~~Ia~~a~~~I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ES--RP~~eG~~La~eL~~~GI~v 508 (640)
++++++.......+-.| .++. | ++..++....+..+.+-+.+.|-..-.+++.. +++. ......|...|+.+
T Consensus 260 ~~~~~e~~~~~~~ld~~--~~l~-g-kv~v~g~~~~~~~la~~L~elGmevv~~~t~~~~~~~~--~~~~~~l~~~~~~v 333 (416)
T cd01980 260 KVANEEKAAAKGAIRAF--SPIK-G-RVLVSGYEGNELLVARLLIESGAEVPYVSTSIPKTSLS--APDYEWLSALGVEV 333 (416)
T ss_pred HHHHHHHHHHHHHHhhH--HhhC-c-eEEEECCCchhHHHHHHHHHcCCEEEEEecCCCChhhh--HHHHHHHHhcCCcc
Confidence 34444433444444333 2454 5 67778888877777777777776544444432 2222 23334454455543
Q ss_pred EEEechH-HHHHhh--hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEecc
Q 006577 509 TYTHINA-ISYIIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCE 564 (640)
Q Consensus 509 TlI~DsA-v~~iM~--~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~ae 564 (640)
.+-.|-. ....++ ++|.+|- | +....+|++.+||++-+..
T Consensus 334 ~~~~~~~~~~~~~~~~~pDl~Ig-------~---------s~~~~~a~~~giP~~r~~~ 376 (416)
T cd01980 334 RYRKSLEDDIAAVEEYRPDLAIG-------T---------TPLVQYAKEKGIPALYYTN 376 (416)
T ss_pred ccCCCHHHHHHHHhhcCCCEEEe-------C---------ChhhHHHHHhCCCEEEecC
Confidence 3222211 122222 4555542 2 2234679999999987653
No 195
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=38.22 E-value=60 Score=30.40 Aligned_cols=28 Identities=39% Similarity=0.487 Sum_probs=20.1
Q ss_pred ccCCCEEEeecCcH---HHHHHHHHHHHcCC
Q 006577 452 IRDGDVLLTYGSSS---AVEMILQHAHELGK 479 (640)
Q Consensus 452 I~dgdvILT~g~Ss---tV~~vL~~A~e~Gk 479 (640)
++.||+++.++.|+ .+...++.|+++|-
T Consensus 101 ~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~ 131 (138)
T PF13580_consen 101 IRPGDVLIVISNSGNSPNVIEAAEEAKERGM 131 (138)
T ss_dssp --TT-EEEEEESSS-SHHHHHHHHHHHHTT-
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
Confidence 78999999987764 58888999988764
No 196
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=38.08 E-value=84 Score=33.78 Aligned_cols=72 Identities=14% Similarity=0.156 Sum_probs=46.2
Q ss_pred EEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhh--hccEEEEcceeEe
Q 006577 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIH--EVTRVFLGASSVL 534 (640)
Q Consensus 457 vILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~--~VdkVlvGADaIl 534 (640)
+||..|.+..-..+++.|.+. .++|++++..|..-+..++. .-+...+....++..+.+ ++|.|+.+.+.+.
T Consensus 1 kililG~g~~~~~l~~aa~~~--G~~v~~~d~~~~~~~~~~ad----~~~~~~~~d~~~l~~~~~~~~id~v~~~~e~v~ 74 (380)
T TIGR01142 1 RVLLLGSGELGKEVAIEAQRL--GVEVIAVDRYANAPAMQVAH----RSYVINMLDGDALRAVIEREKPDYIVPEIEAIA 74 (380)
T ss_pred CEEEECCCHHHHHHHHHHHHc--CCEEEEEeCCCCCchhhhCc----eEEEcCCCCHHHHHHHHHHhCCCEEEeccCccC
Confidence 478889887777888888775 47899999998877665442 111111111123444444 6898888876654
No 197
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=38.07 E-value=59 Score=36.45 Aligned_cols=77 Identities=14% Similarity=0.086 Sum_probs=46.6
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhh--hccEEEEcceeE
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIH--EVTRVFLGASSV 533 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~--~VdkVlvGADaI 533 (640)
..||.+|..+-=..+...+++.+.--+||+ -|.+.|....... ..+++.+..-.++..+.+ ++|.|++|.+..
T Consensus 5 ~kvLviG~g~rehal~~~~~~~~~~~~~~~---~pgn~g~~~~~~~--~~~~~~~~d~~~l~~~a~~~~iD~Vv~g~E~~ 79 (426)
T PRK13789 5 LKVLLIGSGGRESAIAFALRKSNLLSELKV---FPGNGGFPDDELL--PADSFSILDKSSVQSFLKSNPFDLIVVGPEDP 79 (426)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCCCEEEE---ECCchHHhccccc--cccCcCcCCHHHHHHHHHHcCCCEEEECCchH
Confidence 589999999876666666767666668888 4555554321100 112233333344444555 499999998776
Q ss_pred ecCC
Q 006577 534 LSNG 537 (640)
Q Consensus 534 laNG 537 (640)
+..|
T Consensus 80 l~~g 83 (426)
T PRK13789 80 LVAG 83 (426)
T ss_pred HHHH
Confidence 5544
No 198
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=37.94 E-value=51 Score=32.84 Aligned_cols=54 Identities=26% Similarity=0.389 Sum_probs=44.9
Q ss_pred HHhccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCC
Q 006577 449 VTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGL 506 (640)
Q Consensus 449 ~~~I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI 506 (640)
.+.|++-|.|.-|+-+++.+..|+ .||.+-|++-|+==.+--.+||+.|.+.|.
T Consensus 75 ~e~I~~AdlVIsHAGaGS~letL~----l~KPlivVvNd~LMDNHQ~ELA~qL~~egy 128 (170)
T KOG3349|consen 75 TEDIRSADLVISHAGAGSCLETLR----LGKPLIVVVNDSLMDNHQLELAKQLAEEGY 128 (170)
T ss_pred HHHHhhccEEEecCCcchHHHHHH----cCCCEEEEeChHhhhhHHHHHHHHHHhcCc
Confidence 345667788888988888776664 589999999999888888899999999995
No 199
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=37.93 E-value=1.2e+02 Score=27.10 Aligned_cols=77 Identities=12% Similarity=0.038 Sum_probs=48.4
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechH--HHHHhhhccEEEEcceeE
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA--ISYIIHEVTRVFLGASSV 533 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsA--v~~iM~~VdkVlvGADaI 533 (640)
-.||+.|.++.--.++.. .+-+.+.+.|+++.+..-+. +.....+.|.||+|.+--
T Consensus 4 ~~ILl~C~~G~sSS~l~~----------------------k~~~~~~~~gi~~~v~a~~~~~~~~~~~~~Dvill~pqi~ 61 (95)
T TIGR00853 4 TNILLLCAAGMSTSLLVN----------------------KMNKAAEEYGVPVKIAAGSYGAAGEKLDDADVVLLAPQVA 61 (95)
T ss_pred cEEEEECCCchhHHHHHH----------------------HHHHHHHHCCCcEEEEEecHHHHHhhcCCCCEEEECchHH
Confidence 468888887654433322 13456677888887766554 333667889999887644
Q ss_pred ecCCCeecccchHHHHHHHhhCCCcEEEec
Q 006577 534 LSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (640)
Q Consensus 534 laNG~VvNKiGT~~lAlaAk~~~VPVyV~a 563 (640)
+.- ..+--.+..+|+||.++-
T Consensus 62 ~~~---------~~i~~~~~~~~ipv~~I~ 82 (95)
T TIGR00853 62 YML---------PDLKKETDKKGIPVEVIN 82 (95)
T ss_pred HHH---------HHHHHHhhhcCCCEEEeC
Confidence 321 123344667899999863
No 200
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=37.92 E-value=3.5e+02 Score=29.79 Aligned_cols=98 Identities=17% Similarity=0.094 Sum_probs=48.9
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchH-HHHHHHHH-hCCCceEEEec---hHHHHHhh-hccEEEEc
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEG-KLLLRRLV-RKGLSCTYTHI---NAISYIIH-EVTRVFLG 529 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG-~~La~eL~-~~GI~vTlI~D---sAv~~iM~-~VdkVlvG 529 (640)
+.|+|.|-+..+..+|....+.| -+|++.+ |.+.| ..+...+. ..|+.+.++.. ..+...+. +..+|++.
T Consensus 69 ~~i~~~sg~~Ai~~~l~~l~~~G--D~Vl~~~--~~y~~~~~~~~~~~~~~gi~v~~vd~~d~e~l~~~l~~~tklV~l~ 144 (386)
T PRK08045 69 GAVLTNTGMSAIHLVTTVFLKPG--DLLVAPH--DCYGGSYRLFDSLAKRGCYRVLFVDQGDEQALRAALAEKPKLVLVE 144 (386)
T ss_pred eEEEECCHHHHHHHHHHHHcCCC--CEEEEcC--CCcHHHHHHHHHHHhhCCeEEEEeCCCCHHHHHHhcccCCeEEEEE
Confidence 45665555555555555444333 3555553 66665 34444444 34567777631 12222332 44555542
Q ss_pred ceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 530 ADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
.---..|.++. -..++-+|+.++++++|
T Consensus 145 -sP~NPtG~v~d---i~~I~~ia~~~g~~viv 172 (386)
T PRK08045 145 -SPSNPLLRVVD---IAKICHLAREAGAVSVV 172 (386)
T ss_pred -CCCCCCCEecC---HHHHHHHHHHcCCEEEE
Confidence 11112243433 23577778889987765
No 201
>PRK06234 methionine gamma-lyase; Provisional
Probab=37.90 E-value=3.8e+02 Score=29.57 Aligned_cols=98 Identities=19% Similarity=0.238 Sum_probs=49.9
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHH-HH-HHHHhCCCceEEEechH---HHHHhh-hccEEEEc
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKL-LL-RRLVRKGLSCTYTHINA---ISYIIH-EVTRVFLG 529 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~-La-~eL~~~GI~vTlI~DsA---v~~iM~-~VdkVlvG 529 (640)
+.|+|-+-+..+..+|......|. +|++.+ |.+.+.. +. ..+...|+++.++.... +-..+. +..+|++-
T Consensus 81 ~~l~~~sG~~Ai~~al~~ll~~Gd--~Vl~~~--~~y~~~~~~~~~~~~~~G~~v~~vd~~d~e~l~~~i~~~tklI~ie 156 (400)
T PRK06234 81 AAVVAASGMGAISSSLWSALKAGD--HVVASD--TLYGCTFALLNHGLTRYGVEVTFVDTSNLEEVRNALKANTKVVYLE 156 (400)
T ss_pred cEEEEcCHHHHHHHHHHHHhCCCC--EEEEec--CccchHHHHHHHHHhhCCeEEEEECCCCHHHHHHHhccCCeEEEEE
Confidence 455554445555555554444454 555544 5554432 22 45667899888875332 222332 33334332
Q ss_pred ceeEecCCCeecccchHHHHHHHhhC--CCcEEE
Q 006577 530 ASSVLSNGTVCSRVGTACVAMVAYGF--HIPVLV 561 (640)
Q Consensus 530 ADaIlaNG~VvNKiGT~~lAlaAk~~--~VPVyV 561 (640)
.---..|.+.. --.|+-+|+.+ ++.|+|
T Consensus 157 -sP~NPtG~v~d---l~~I~~la~~~~~~i~liv 186 (400)
T PRK06234 157 -TPANPTLKVTD---IKAISNIAHENNKECLVFV 186 (400)
T ss_pred -CCCCCCCCcCC---HHHHHHHHHhcCCCCEEEE
Confidence 11122344433 34567778886 776665
No 202
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=37.61 E-value=1.1e+02 Score=35.12 Aligned_cols=92 Identities=20% Similarity=0.196 Sum_probs=59.2
Q ss_pred CCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEcceeEe
Q 006577 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVL 534 (640)
Q Consensus 455 gdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGADaIl 534 (640)
+..|+.+|...+=+.+.+..++.| ..|+|.|.||.-++.... .|...||.+..-.... .....+|.|++.-
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G--~~v~v~D~~~~~~~~~~~-~~~~~~i~~~~g~~~~--~~~~~~d~vV~SP---- 77 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLG--AEVTVSDDRPAPEGLAAQ-PLLLEGIEVELGSHDD--EDLAEFDLVVKSP---- 77 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCC--CeEEEEcCCCCccchhhh-hhhccCceeecCccch--hccccCCEEEECC----
Confidence 677888776544345555566555 789999999998665444 7777888776654333 4444667775432
Q ss_pred cCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 535 SNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 535 aNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
++ -.+..+-..|+..+|||+-
T Consensus 78 ---Gi---~~~~p~v~~A~~~gi~i~~ 98 (448)
T COG0771 78 ---GI---PPTHPLVEAAKAAGIEIIG 98 (448)
T ss_pred ---CC---CCCCHHHHHHHHcCCcEEe
Confidence 22 2344466678888888763
No 203
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=37.54 E-value=2.3e+02 Score=26.23 Aligned_cols=97 Identities=18% Similarity=0.188 Sum_probs=56.1
Q ss_pred EEeecCcHHHHHHHHHHHHcCCeeEEEEcCCC---------C-Cc----hHH----HHHHHHHhC--CCceEEEech---
Q 006577 458 LLTYGSSSAVEMILQHAHELGKQFRVVIVDSR---------P-KH----EGK----LLLRRLVRK--GLSCTYTHIN--- 514 (640)
Q Consensus 458 ILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESR---------P-~~----eG~----~La~eL~~~--GI~vTlI~Ds--- 514 (640)
|+..|..+.=..+++.+...|.. ++.++|.. - ++ -|+ .+++.|.+. +++++.+...
T Consensus 2 VliiG~GglGs~ia~~L~~~Gv~-~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~ 80 (143)
T cd01483 2 VLLVGLGGLGSEIALNLARSGVG-KITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISE 80 (143)
T ss_pred EEEECCCHHHHHHHHHHHHCCCC-EEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecCh
Confidence 66677766655566666666653 33333322 1 11 132 223455544 3555554432
Q ss_pred -HHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEecc
Q 006577 515 -AISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCE 564 (640)
Q Consensus 515 -Av~~iM~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~ae 564 (640)
....++.+.|.||.+.|.. --...+.-.|+.+++||+.+.-
T Consensus 81 ~~~~~~~~~~diVi~~~d~~---------~~~~~l~~~~~~~~i~~i~~~~ 122 (143)
T cd01483 81 DNLDDFLDGVDLVIDAIDNI---------AVRRALNRACKELGIPVIDAGG 122 (143)
T ss_pred hhHHHHhcCCCEEEECCCCH---------HHHHHHHHHHHHcCCCEEEEcC
Confidence 2235667899998887652 2356677889999999998643
No 204
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=37.47 E-value=51 Score=34.48 Aligned_cols=97 Identities=18% Similarity=0.147 Sum_probs=58.7
Q ss_pred EEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhh--hccEEEEcceeE-
Q 006577 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIH--EVTRVFLGASSV- 533 (640)
Q Consensus 457 vILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~--~VdkVlvGADaI- 533 (640)
+||..|.|+.+-..|..+.++ +.+.|+.+ +|..+.- ....++..++. +.|.||--|--.
T Consensus 2 riLI~GasG~lG~~l~~~l~~-~~~~v~~~-~r~~~dl----------------~d~~~~~~~~~~~~pd~Vin~aa~~~ 63 (286)
T PF04321_consen 2 RILITGASGFLGSALARALKE-RGYEVIAT-SRSDLDL----------------TDPEAVAKLLEAFKPDVVINCAAYTN 63 (286)
T ss_dssp EEEEETTTSHHHHHHHHHHTT-TSEEEEEE-STTCS-T----------------TSHHHHHHHHHHH--SEEEE------
T ss_pred EEEEECCCCHHHHHHHHHHhh-CCCEEEEe-CchhcCC----------------CCHHHHHHHHHHhCCCeEeccceeec
Confidence 689999999988888777654 55788887 5553211 11123333333 245555443110
Q ss_pred ----ecC---CCeecccchHHHHHHHhhCCCcEEEeccccccccc
Q 006577 534 ----LSN---GTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHER 571 (640)
Q Consensus 534 ----laN---G~VvNKiGT~~lAlaAk~~~VPVyV~aetyKf~~~ 571 (640)
-.| -.-+|-.|+..+|-+|+.++++++-++-.+=|+..
T Consensus 64 ~~~ce~~p~~a~~iN~~~~~~la~~~~~~~~~li~~STd~VFdG~ 108 (286)
T PF04321_consen 64 VDACEKNPEEAYAINVDATKNLAEACKERGARLIHISTDYVFDGD 108 (286)
T ss_dssp HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT-EEEEEEEGGGS-SS
T ss_pred HHhhhhChhhhHHHhhHHHHHHHHHHHHcCCcEEEeeccEEEcCC
Confidence 001 23468899999999999999999998888777654
No 205
>PRK10537 voltage-gated potassium channel; Provisional
Probab=37.42 E-value=5.8e+02 Score=28.59 Aligned_cols=92 Identities=11% Similarity=0.074 Sum_probs=55.5
Q ss_pred CCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhh-----hccEEEEc
Q 006577 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIH-----EVTRVFLG 529 (640)
Q Consensus 455 gdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~-----~VdkVlvG 529 (640)
.+.|+..|++.....+.+..+++|..+.| +|... ..+....|+++..- |..=-..++ +++.|++-
T Consensus 240 k~HvII~G~g~lg~~v~~~L~~~g~~vvV--Id~d~-------~~~~~~~g~~vI~G-D~td~e~L~~AgI~~A~aVI~~ 309 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLGLRQRGQAVTV--IVPLG-------LEHRLPDDADLIPG-DSSDSAVLKKAGAARARAILAL 309 (393)
T ss_pred CCeEEEECCChHHHHHHHHHHHCCCCEEE--EECch-------hhhhccCCCcEEEe-CCCCHHHHHhcCcccCCEEEEc
Confidence 46788889998888888887776665444 34221 13344567765433 444444444 66777664
Q ss_pred ceeEecCCCeecccchHHHHHHHhhCCC--cEEEeccc
Q 006577 530 ASSVLSNGTVCSRVGTACVAMVAYGFHI--PVLVCCEA 565 (640)
Q Consensus 530 ADaIlaNG~VvNKiGT~~lAlaAk~~~V--PVyV~aet 565 (640)
.+ +..-...+++.||+.+. .+++.+..
T Consensus 310 t~---------dD~~Nl~ivL~ar~l~p~~kIIa~v~~ 338 (393)
T PRK10537 310 RD---------NDADNAFVVLAAKEMSSDVKTVAAVND 338 (393)
T ss_pred CC---------ChHHHHHHHHHHHHhCCCCcEEEEECC
Confidence 43 23445678899999874 45554444
No 206
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=37.39 E-value=2.2e+02 Score=30.65 Aligned_cols=103 Identities=16% Similarity=0.130 Sum_probs=67.1
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEcceeEec
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLS 535 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGADaIla 535 (640)
|..+.+-....|..+|+++.+.|.+.-|++.+.-+....++|.....+.|+ .++==|.++.+-....+...-......
T Consensus 65 Dlavi~vpa~~v~~~l~e~~~~Gvk~avIis~Gf~e~~~~~l~~~a~~~gi--rilGPNc~Giin~~~~~~~~~~~~~~~ 142 (286)
T TIGR01019 65 NASVIFVPAPFAADAIFEAIDAGIELIVCITEGIPVHDMLKVKRYMEESGT--RLIGPNCPGIITPGECKIGIMPGHIHK 142 (286)
T ss_pred CEEEEecCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCC--EEECCCCceEEcccccceeeccccCCC
Confidence 677777778889999999999998888888887766655667666666665 333333433333322222221222333
Q ss_pred CC--CeecccchHHHHHH--HhhCCCcEE
Q 006577 536 NG--TVCSRVGTACVAMV--AYGFHIPVL 560 (640)
Q Consensus 536 NG--~VvNKiGT~~lAla--Ak~~~VPVy 560 (640)
.| .+++..|++..+++ +++.++-|.
T Consensus 143 ~G~ValiSQSG~l~~~~~~~a~~~giG~S 171 (286)
T TIGR01019 143 PGNVGIVSRSGTLTYEAVHQLTKAGFGQS 171 (286)
T ss_pred CCcEEEEeccHHHHHHHHHHHHHcCCCeE
Confidence 56 37899998888875 677788765
No 207
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=37.26 E-value=45 Score=34.92 Aligned_cols=41 Identities=12% Similarity=0.040 Sum_probs=31.8
Q ss_pred EEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHH
Q 006577 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL 498 (640)
Q Consensus 457 vILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La 498 (640)
+||..|.+... .+++.+++.|..++|++++..|...|..++
T Consensus 3 ~vLv~g~~~~~-~~~~~l~~~~~g~~vi~~d~~~~~~~~~~~ 43 (326)
T PRK12767 3 NILVTSAGRRV-QLVKALKKSLLKGRVIGADISELAPALYFA 43 (326)
T ss_pred eEEEecCCccH-HHHHHHHHhccCCEEEEECCCCcchhhHhc
Confidence 57777776555 778888887778999999999988776543
No 208
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=37.18 E-value=4.9e+02 Score=27.41 Aligned_cols=37 Identities=19% Similarity=0.043 Sum_probs=31.4
Q ss_pred hHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEc
Q 006577 493 EGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLG 529 (640)
Q Consensus 493 eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvG 529 (640)
+-.++++.+.+.|+++..|+++.-+.+-+.+|.+|.-
T Consensus 104 ~~~~~~~~ak~~g~~vI~iT~~~~s~la~~ad~~l~~ 140 (321)
T PRK11543 104 ELDLIIPRLEDKSIALLAMTGKPTSPLGLAAKAVLDI 140 (321)
T ss_pred HHHHHHHHHHHcCCeEEEEECCCCChhHHhCCEEEEc
Confidence 4456678999999999999998888888899999854
No 209
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=37.00 E-value=81 Score=31.31 Aligned_cols=83 Identities=13% Similarity=0.162 Sum_probs=45.5
Q ss_pred eEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEcceeEecCCCee----cccchHHHHHHHhhCC
Q 006577 481 FRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVC----SRVGTACVAMVAYGFH 556 (640)
Q Consensus 481 f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGADaIlaNG~Vv----NKiGT~~lAlaAk~~~ 556 (640)
+-|.+...-+.-....+.+.|...|+++.++...... -+.++|.+|++-- .+.+. ...+....-.-+...+
T Consensus 3 i~vl~~~~~~~e~~~~~~~~l~~~g~~~~~~~~~~~~-~l~~~d~iii~GG----~~~~~~~~~~~~~~~~~i~~~~~~~ 77 (200)
T PRK13527 3 IGVLALQGDVEEHIDALKRALDELGIDGEVVEVRRPG-DLPDCDALIIPGG----ESTTIGRLMKREGILDEIKEKIEEG 77 (200)
T ss_pred EEEEEECCccHHHHHHHHHHHHhcCCCeEEEEeCChH-HhccCCEEEECCC----cHHHHHHHHhhccHHHHHHHHHHCC
Confidence 4566666555444445557888888887766654432 3456777766542 11111 1122222222233478
Q ss_pred CcEEEecccccc
Q 006577 557 IPVLVCCEAYKF 568 (640)
Q Consensus 557 VPVyV~aetyKf 568 (640)
+|++-+|--+-+
T Consensus 78 ~pilGIC~G~Ql 89 (200)
T PRK13527 78 LPILGTCAGLIL 89 (200)
T ss_pred CeEEEECHHHHH
Confidence 999977755543
No 210
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=36.83 E-value=7.2e+02 Score=28.75 Aligned_cols=92 Identities=18% Similarity=0.184 Sum_probs=56.6
Q ss_pred CCCEEEeecCcHHHHHHHHHHH-HcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEech-HHHHHhhh--ccEEEEc
Q 006577 454 DGDVLLTYGSSSAVEMILQHAH-ELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN-AISYIIHE--VTRVFLG 529 (640)
Q Consensus 454 dgdvILT~g~SstV~~vL~~A~-e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds-Av~~iM~~--VdkVlvG 529 (640)
.|..++.++....+..+.+-+. +.|... +.+-+.-......+...|...+..+.+..|. .+...+++ .|+||
T Consensus 292 ~Gkrv~I~gd~~~a~~l~~~L~~ElGm~v--v~~gt~~~~~~~~~~~~~~~~~~~~~i~~D~~el~~~i~~~~Pdlii-- 367 (519)
T PRK02910 292 TGKRVFVFGDATHAVAAARILSDELGFEV--VGAGTYLREDARWVRAAAKEYGDEALITDDYLEVEDAIAEAAPELVL-- 367 (519)
T ss_pred cCCEEEEEcCcHHHHHHHHHHHHhcCCeE--EEEecCCcchhHHHHHHHHhcCCCeEEecCHHHHHHHHHhcCCCEEE--
Confidence 5778999998877777666666 567554 4443322233445556677777666665663 23333332 44442
Q ss_pred ceeEecCCCeecccchHHHHHHHhhCCCcEEEec
Q 006577 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (640)
Q Consensus 530 ADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~a 563 (640)
|+..-..+|+..+||+++++
T Consensus 368 --------------G~~~er~~a~~lgiP~~~i~ 387 (519)
T PRK02910 368 --------------GTQMERHSAKRLGIPCAVIS 387 (519)
T ss_pred --------------EcchHHHHHHHcCCCEEEec
Confidence 44555668999999998775
No 211
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=36.58 E-value=5.4e+02 Score=27.18 Aligned_cols=76 Identities=11% Similarity=0.176 Sum_probs=41.3
Q ss_pred ccCCCEEEeecCcH-----HHHHHHHHHHHc-CCeeEEEEcCCCCCchHH--HHHHHHHhCCCceEEEech-HHHHHhh-
Q 006577 452 IRDGDVLLTYGSSS-----AVEMILQHAHEL-GKQFRVVIVDSRPKHEGK--LLLRRLVRKGLSCTYTHIN-AISYIIH- 521 (640)
Q Consensus 452 I~dgdvILT~g~Ss-----tV~~vL~~A~e~-Gk~f~ViV~ESRP~~eG~--~La~eL~~~GI~vTlI~Ds-Av~~iM~- 521 (640)
+..+.+|+-.|.++ ++..+...+..+ | ..+|.++...++.-|. .|...-...|+++..+.+. .+...+.
T Consensus 191 ~~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g-~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~ 269 (282)
T TIGR03499 191 LEQGGVIALVGPTGVGKTTTLAKLAARFVLEHG-NKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDR 269 (282)
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHHHHcC-CCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHH
Confidence 34466777777664 344444444443 3 2466777777776554 2223333468888766543 3344443
Q ss_pred --hccEEEE
Q 006577 522 --EVTRVFL 528 (640)
Q Consensus 522 --~VdkVlv 528 (640)
+.|.||+
T Consensus 270 ~~~~d~vli 278 (282)
T TIGR03499 270 LRDKDLILI 278 (282)
T ss_pred ccCCCEEEE
Confidence 4566655
No 212
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=36.54 E-value=3.4e+02 Score=27.16 Aligned_cols=109 Identities=15% Similarity=0.175 Sum_probs=65.9
Q ss_pred HHHHHHHhccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCC---Cch-----------H----HHHHHHHHhC-
Q 006577 444 IVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRP---KHE-----------G----KLLLRRLVRK- 504 (640)
Q Consensus 444 Ia~~a~~~I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP---~~e-----------G----~~La~eL~~~- 504 (640)
++..+.++|. +.+||..|..++-..++..+...|.. +++++|... .+- | ..+++.|.+.
T Consensus 11 ~g~~~q~kl~-~~~VlviG~GglGs~ia~~La~~Gv~-~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n 88 (202)
T TIGR02356 11 IGEEGQQRLL-NSHVLIIGAGGLGSPAALYLAGAGVG-TIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELN 88 (202)
T ss_pred cCHHHHHHhc-CCCEEEECCCHHHHHHHHHHHHcCCC-eEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhC
Confidence 4555566665 47888999988777777777777753 444444221 111 1 1233566654
Q ss_pred -CCceEEEe----chHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEec
Q 006577 505 -GLSCTYTH----INAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (640)
Q Consensus 505 -GI~vTlI~----DsAv~~iM~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~a 563 (640)
.++++.+. ...+-.+++++|.||...|..- --..+.-.|+.+++|++.+.
T Consensus 89 p~v~i~~~~~~i~~~~~~~~~~~~D~Vi~~~d~~~---------~r~~l~~~~~~~~ip~i~~~ 143 (202)
T TIGR02356 89 SDIQVTALKERVTAENLELLINNVDLVLDCTDNFA---------TRYLINDACVALGTPLISAA 143 (202)
T ss_pred CCCEEEEehhcCCHHHHHHHHhCCCEEEECCCCHH---------HHHHHHHHHHHcCCCEEEEE
Confidence 34554443 2234456788999988776531 12346678999999998754
No 213
>PRK06836 aspartate aminotransferase; Provisional
Probab=36.49 E-value=3.7e+02 Score=29.18 Aligned_cols=103 Identities=16% Similarity=0.183 Sum_probs=52.9
Q ss_pred ccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEech-H-----HHHH---hh-
Q 006577 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN-A-----ISYI---IH- 521 (640)
Q Consensus 452 I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds-A-----v~~i---M~- 521 (640)
+....+|+|.|.+..+..++....+.| -.|++.+ |.+.+.. ..+...|+++.++... . +..+ +.
T Consensus 94 ~~~~~i~~t~G~~~al~~~~~~l~~~g--d~Vli~~--p~~~~~~--~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~~~~ 167 (394)
T PRK06836 94 LTADHIVMTCGAAGALNVALKAILNPG--DEVIVFA--PYFVEYR--FYVDNHGGKLVVVPTDTDTFQPDLDALEAAITP 167 (394)
T ss_pred CCcCcEEEeCChHHHHHHHHHHhcCCC--CEEEEcC--CCCccHH--HHHHHcCCEEEEEecCCccCcCCHHHHHhhcCc
Confidence 445567788777666655555544333 3555544 7766643 3345678888777521 1 1122 21
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHHHhh------CCCcEEE
Q 006577 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYG------FHIPVLV 561 (640)
Q Consensus 522 ~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~------~~VPVyV 561 (640)
++.+|++- ..-...|.++..----.++-+|+. |++.+++
T Consensus 168 ~~~~v~~~-~p~NPtG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~ 212 (394)
T PRK06836 168 KTKAVIIN-SPNNPTGVVYSEETLKALAALLEEKSKEYGRPIYLIS 212 (394)
T ss_pred CceEEEEe-CCCCCCCcCCCHHHHHHHHHHHHHhhhccCCCeEEEE
Confidence 34444432 222223444443333445556666 7766664
No 214
>PRK09136 5'-methylthioadenosine phosphorylase; Validated
Probab=36.32 E-value=1.5e+02 Score=31.00 Aligned_cols=76 Identities=20% Similarity=0.105 Sum_probs=48.6
Q ss_pred EeecCcHHHHHHHHHH-HHcCCe-eE--EEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEcceeEe
Q 006577 459 LTYGSSSAVEMILQHA-HELGKQ-FR--VVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVL 534 (640)
Q Consensus 459 LT~g~SstV~~vL~~A-~e~Gk~-f~--ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGADaIl 534 (640)
+++-|+......++++ .+.|-+ ++ ||+.-+-|.+|-..-.+.|. . +|||+|-
T Consensus 127 ~~~~~d~~L~~~~~~~a~~~~~~~~~~Gvy~~~~GP~feT~AE~r~lr-------------------~-----~Gad~Vg 182 (245)
T PRK09136 127 FTHPYSPMLRQRLLAAARAAGVSLVDGGVYAATQGPRLETAAEIARLE-------------------R-----DGCDLVG 182 (245)
T ss_pred CcccCCHHHHHHHHHHHHHcCCcEEeccEEEEeeCCCcCCHHHHHHHH-------------------H-----cCCCEEc
Confidence 4455665555555444 334444 32 88888888887554333332 2 3777775
Q ss_pred cCCCeecccchHHHHHHHhhCCCcEEEecccc
Q 006577 535 SNGTVCSRVGTACVAMVAYGFHIPVLVCCEAY 566 (640)
Q Consensus 535 aNG~VvNKiGT~~lAlaAk~~~VPVyV~aety 566 (640)
.. |...|++|+++++||.+++--.
T Consensus 183 Ms--------~~pEa~~A~~~gi~~~~i~~Vt 206 (245)
T PRK09136 183 MT--------GMPEAALARELGLPYACLALVA 206 (245)
T ss_pred Cc--------HHHHHHHHHHcCCCEEEEEEEe
Confidence 44 5788999999999999876543
No 215
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=36.30 E-value=1.7e+02 Score=29.70 Aligned_cols=79 Identities=19% Similarity=0.246 Sum_probs=48.4
Q ss_pred EEEEcCCCCCchHHHHHHHHHhCCCceEEEechH-----HHHHhhhccEEEEcceeEecCCCeecccch-HHHHHHHhhC
Q 006577 482 RVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA-----ISYIIHEVTRVFLGASSVLSNGTVCSRVGT-ACVAMVAYGF 555 (640)
Q Consensus 482 ~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsA-----v~~iM~~VdkVlvGADaIlaNG~VvNKiGT-~~lAlaAk~~ 555 (640)
+|+|++..+.+.+. +...|.+.|+.+.++.-.. ...++.+.|.+|++=- .|+. .+.+. ..+.--+...
T Consensus 2 ~ilv~d~~~~~~~~-~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~dgliisGG----p~~~-~~~~~~~~~i~~~~~~ 75 (214)
T PRK07765 2 RILVVDNYDSFVFN-LVQYLGQLGVEAEVWRNDDPRLADEAAVAAQFDGVLLSPG----PGTP-ERAGASIDMVRACAAA 75 (214)
T ss_pred eEEEEECCCcHHHH-HHHHHHHcCCcEEEEECCCcCHHHHHHhhcCCCEEEECCC----CCCh-hhcchHHHHHHHHHhC
Confidence 67888888766663 6688899999999887543 2223457888877411 1221 22332 2333344557
Q ss_pred CCcEEEecccc
Q 006577 556 HIPVLVCCEAY 566 (640)
Q Consensus 556 ~VPVyV~aety 566 (640)
++|++-+|=-+
T Consensus 76 ~~PiLGIC~G~ 86 (214)
T PRK07765 76 GTPLLGVCLGH 86 (214)
T ss_pred CCCEEEEccCH
Confidence 99999766443
No 216
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=36.21 E-value=1.4e+02 Score=30.31 Aligned_cols=107 Identities=12% Similarity=0.046 Sum_probs=56.1
Q ss_pred EEeecCcHHHHH-HHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHh-CCCceEE---EechHHHHHhhh--ccEEEEcc
Q 006577 458 LLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVR-KGLSCTY---THINAISYIIHE--VTRVFLGA 530 (640)
Q Consensus 458 ILT~g~SstV~~-vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~-~GI~vTl---I~DsAv~~iM~~--VdkVlvGA 530 (640)
||..|-++.+-. +++.+.+.|..++|++++..........+..+.. .++.+.. .....+..+++. +|.||-.|
T Consensus 2 ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi~~a 81 (317)
T TIGR01181 2 ILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADLEDNPRYRFVKGDIGDRELVSRLFTEHQPDAVVHFA 81 (317)
T ss_pred EEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhhhhhhhccCCCcEEEEcCCcCHHHHHHHHhhcCCCEEEEcc
Confidence 666677766543 4455555565578887763222111111222221 2333321 122355566765 89888777
Q ss_pred eeEecCC--------CeecccchHHHHHHHhhC--CCcEEEecc
Q 006577 531 SSVLSNG--------TVCSRVGTACVAMVAYGF--HIPVLVCCE 564 (640)
Q Consensus 531 DaIlaNG--------~VvNKiGT~~lAlaAk~~--~VPVyV~ae 564 (640)
-....+- --+|-.|+..++-+|+.+ ++.++.++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~~Ss 125 (317)
T TIGR01181 82 AESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRFHHIST 125 (317)
T ss_pred cccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEeec
Confidence 4332111 124677888888888875 456555443
No 217
>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family. Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.
Probab=36.18 E-value=5.9e+02 Score=27.57 Aligned_cols=135 Identities=16% Similarity=0.066 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--CCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcC-CCCCchHH
Q 006577 419 SEAKATLHSDIERFINEKIILADRVIVKHAVTKIRD--GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVD-SRPKHEGK 495 (640)
Q Consensus 419 ~eaK~~L~e~Id~fi~E~i~~A~~~Ia~~a~~~I~d--gdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~E-SRP~~eG~ 495 (640)
.+.++...+.++.|--. ....+.+-+..+++..- ..+++|-|.+.....++......| -+|++.. .+|.+--.
T Consensus 36 ~~~~~~~~~~~~~~~g~--~~~~~~Le~~lA~~~g~~~e~ilv~~gg~~a~~~~~~al~~~g--d~Vli~~~d~p~~~s~ 111 (346)
T TIGR03576 36 FKIDEEDLELLETYVGP--AIFEEKVQELGREHLGGPEEKILVFNRTSSAILATILALEPPG--RKVVHYLPEKPAHPSI 111 (346)
T ss_pred hhHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHcCCCcceEEEECCHHHHHHHHHHHhCCCC--CEEEECCCCCCCchhH
Confidence 34555566666655100 11223333444445432 455555555555555555444333 3565532 35544322
Q ss_pred HHHHHHHhCCCceEEEechHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 496 LLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 496 ~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
. ..+.-.|.++....|-.--....+..+|++- .-..+|+++.+.=-..++-+|+.|++.|+|
T Consensus 112 ~--~~~~l~ga~~~~~~~l~~l~~~~~~~lIiit--g~s~~G~v~~~~~L~~i~~la~~~~~~liv 173 (346)
T TIGR03576 112 P--RSCKLAGAEYFESDELSELKKIDGTSLVVIT--GSTMDLKVVSEEDLKRVIKQAKSKEAIVLV 173 (346)
T ss_pred H--HHHHHcCCEEeccCCHHHHhhCcCceEEEEE--CCCCCCcccCHHHHHHHHHHHHHcCCEEEE
Confidence 1 2222245554333221110011233444441 113456666544445566678889988776
No 218
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=35.63 E-value=4.9e+02 Score=28.60 Aligned_cols=108 Identities=12% Similarity=0.097 Sum_probs=65.3
Q ss_pred HHHHHHHhccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCC---------CC---------chHHHHHHHHHhC-
Q 006577 444 IVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSR---------PK---------HEGKLLLRRLVRK- 504 (640)
Q Consensus 444 Ia~~a~~~I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESR---------P~---------~eG~~La~eL~~~- 504 (640)
++..+...+. +.+||.+|..++-..++..+...|.. +++++|-. -. .--..+++.|.+.
T Consensus 125 ~g~~~q~~l~-~~~VlvvG~GG~Gs~ia~~La~~Gvg-~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~n 202 (376)
T PRK08762 125 VGEEGQRRLL-EARVLLIGAGGLGSPAALYLAAAGVG-TLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALN 202 (376)
T ss_pred cCHHHHHHHh-cCcEEEECCCHHHHHHHHHHHHcCCC-eEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHC
Confidence 4444555664 45788889988766667766667754 33333321 10 0112334566554
Q ss_pred -CCceEEEe----chHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEe
Q 006577 505 -GLSCTYTH----INAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (640)
Q Consensus 505 -GI~vTlI~----DsAv~~iM~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~ 562 (640)
.+.++.+. ...+..+++++|.||-..|.+.. -+.+.-+|+.++|||+.+
T Consensus 203 p~v~v~~~~~~~~~~~~~~~~~~~D~Vv~~~d~~~~---------r~~ln~~~~~~~ip~i~~ 256 (376)
T PRK08762 203 PDVQVEAVQERVTSDNVEALLQDVDVVVDGADNFPT---------RYLLNDACVKLGKPLVYG 256 (376)
T ss_pred CCCEEEEEeccCChHHHHHHHhCCCEEEECCCCHHH---------HHHHHHHHHHcCCCEEEE
Confidence 34444333 23455677899999988886531 234667899999999875
No 219
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=35.47 E-value=2.7e+02 Score=29.01 Aligned_cols=95 Identities=9% Similarity=0.013 Sum_probs=64.5
Q ss_pred CCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEcceeE
Q 006577 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSV 533 (640)
Q Consensus 454 dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGADaI 533 (640)
.|..||..|-.....+=+..+.+.|-.++|+-.+-.|..+ .|.+.| .++++.-.--...+..+++||...|
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~------~l~~~~-~i~~~~r~~~~~dl~g~~LViaATd-- 94 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFL------DLKKYG-NLKLIKGNYDKEFIKDKHLIVIATD-- 94 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHH------HHHhCC-CEEEEeCCCChHHhCCCcEEEECCC--
Confidence 4678999999999877677777778889999877655543 234333 2555553333334567788877764
Q ss_pred ecCCCeecccchHHHHHHHhhCCCcEEEecc
Q 006577 534 LSNGTVCSRVGTACVAMVAYGFHIPVLVCCE 564 (640)
Q Consensus 534 laNG~VvNKiGT~~lAlaAk~~~VPVyV~ae 564 (640)
++.=.-.++-.|++.+++|.++..
T Consensus 95 -------D~~vN~~I~~~a~~~~~lvn~vd~ 118 (223)
T PRK05562 95 -------DEKLNNKIRKHCDRLYKLYIDCSD 118 (223)
T ss_pred -------CHHHHHHHHHHHHHcCCeEEEcCC
Confidence 222234677899999999998754
No 220
>PRK08175 aminotransferase; Validated
Probab=35.34 E-value=98 Score=33.55 Aligned_cols=99 Identities=14% Similarity=0.178 Sum_probs=51.2
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEe-chH------HHHHhh----hcc
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-INA------ISYIIH----EVT 524 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~-DsA------v~~iM~----~Vd 524 (640)
.+|+|.|.+..+..++....+.|. +|++. +|.+.+..... ...|+.+..+. |.. +-..++ ++.
T Consensus 93 ~i~~t~G~~~~l~~~~~~~~~~gd--~Vlv~--~P~y~~~~~~~--~~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~~ 166 (395)
T PRK08175 93 EAIVTIGSKEGLAHLMLATLDHGD--TVLVP--NPSYPIHIYGA--VIAGAQVRSVPLVEGVDFFNELERAIRESYPKPK 166 (395)
T ss_pred cEEEccCcHHHHHHHHHHhCCCCC--EEEEc--CCCCcchHHHH--HHcCCeEEEEecccCCCcHHHHHHHHhhccCCce
Confidence 588888877766655555444443 44443 66666544443 24677777664 211 112222 233
Q ss_pred EEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 525 RVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 525 kVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
.|++. .-=-..|.+++.-=-..++-+|++|++.+++
T Consensus 167 ~v~i~-~p~NPtG~~~~~~~~~~i~~~a~~~~i~ii~ 202 (395)
T PRK08175 167 MMILG-FPSNPTAQCVELEFFEKVVALAKRYDVLVVH 202 (395)
T ss_pred EEEEe-CCCCCCCCCCCHHHHHHHHHHHHHcCcEEEE
Confidence 33331 0001223333332225777789999997765
No 221
>PRK07050 cystathionine beta-lyase; Provisional
Probab=35.33 E-value=4.9e+02 Score=28.71 Aligned_cols=98 Identities=13% Similarity=0.087 Sum_probs=46.0
Q ss_pred EEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHH-HH-HHHHhCCCceEEEec---hHHHHHhhhccEEEEcce
Q 006577 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKL-LL-RRLVRKGLSCTYTHI---NAISYIIHEVTRVFLGAS 531 (640)
Q Consensus 457 vILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~-La-~eL~~~GI~vTlI~D---sAv~~iM~~VdkVlvGAD 531 (640)
+++|-|-+..+..+|....+.| -+|++.+ |.+.+.. +. ..+...|+.++++.. ..+...+..=+++|+-.
T Consensus 83 ~l~~~sgt~Ai~~~l~al~~~G--D~Vl~~~--~~y~~~~~~~~~~~~~~Gi~v~~vd~~~~~~l~~~i~~~tklV~le- 157 (394)
T PRK07050 83 ALLQPSGLAAISLVYFGLVKAG--DDVLIPD--NAYGPNRDHGEWLARDFGITVRFYDPLIGAGIADLIQPNTRLIWLE- 157 (394)
T ss_pred EEEeccHHHHHHHHHHHHhCCC--CEEEEec--CCcccHHHHHHHHHHhcCeEEEEECCCCHHHHHHhcCCCCeEEEEE-
Confidence 4444343444444444443333 3555543 4444433 23 345567888877642 23444443323333211
Q ss_pred eEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 532 SVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 532 aIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
. .+.-.....=-..|+-+|+.++++|++
T Consensus 158 ~--p~Np~~~~~di~~I~~ia~~~gi~liv 185 (394)
T PRK07050 158 A--PGSVTMEVPDVPAITAAARARGVVTAI 185 (394)
T ss_pred C--CCCCCccHhhHHHHHHHHHHcCCEEEE
Confidence 0 111112222234566778889988776
No 222
>PRK13936 phosphoheptose isomerase; Provisional
Probab=35.30 E-value=4.7e+02 Score=26.11 Aligned_cols=36 Identities=0% Similarity=-0.117 Sum_probs=23.8
Q ss_pred HHHHHHHHhCCCceEEEec---hHHHHHhhhccEEEEcc
Q 006577 495 KLLLRRLVRKGLSCTYTHI---NAISYIIHEVTRVFLGA 530 (640)
Q Consensus 495 ~~La~eL~~~GI~vTlI~D---sAv~~iM~~VdkVlvGA 530 (640)
.++++.+.+.|+++..|++ +.++-+...+|.+|.-.
T Consensus 128 ~~~~~~ak~~g~~iI~IT~~~~s~l~~l~~~ad~~l~v~ 166 (197)
T PRK13936 128 IQAIQAAHEREMHVVALTGRDGGKMASLLLPEDVEIRVP 166 (197)
T ss_pred HHHHHHHHHCCCeEEEEECCCCChhhhhhccCCEEEEeC
Confidence 3456788888999988887 44444433577666443
No 223
>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.
Probab=35.26 E-value=4.2e+02 Score=28.48 Aligned_cols=94 Identities=11% Similarity=0.014 Sum_probs=51.5
Q ss_pred CCEEEeec-CcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEe-chH------HH---HHhh-h
Q 006577 455 GDVLLTYG-SSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-INA------IS---YIIH-E 522 (640)
Q Consensus 455 gdvILT~g-~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~-DsA------v~---~iM~-~ 522 (640)
..+|+|-+ -+..++.++......+++..+++. +|+ |.+++..+...|++++++. |.. .. ..+. +
T Consensus 63 ~~vvf~~gs~T~a~~~~~~~l~~~~~~~~~i~~--g~~--~~~~~~~a~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 138 (355)
T cd00611 63 YKVLFLQGGATGQFAAVPLNLLGDKGTADYVVT--GAW--SAKAAKEAKRYGGVVVIVAAKEEGKYTKIPDVETWDLAPD 138 (355)
T ss_pred ceEEEEcCCchHHHHHHHHhcCCCCCeEEEEEC--CHH--HHHHHHHHHhcCCCcEEEecccccCCCCCCCHhhcCCCCC
Confidence 46888877 556667676666433444433333 554 3444555566799888876 311 11 1122 3
Q ss_pred ccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 523 VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 523 VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
.+. |.-++.-...|..+. -+++.||+.|+|
T Consensus 139 ~~l-V~~~h~~t~tG~~~~--------~i~~~~g~~~~V 168 (355)
T cd00611 139 AAY-VHYCSNETIHGVEFD--------EVPDTGGVPLVA 168 (355)
T ss_pred CCE-EEEeCCcccccEEcc--------eecccCCCeEEE
Confidence 443 444455555555433 344558887776
No 224
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=35.19 E-value=2.3e+02 Score=31.47 Aligned_cols=71 Identities=13% Similarity=0.098 Sum_probs=41.7
Q ss_pred EEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHH---HHHhhhccEEEEcc
Q 006577 458 LLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAI---SYIIHEVTRVFLGA 530 (640)
Q Consensus 458 ILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv---~~iM~~VdkVlvGA 530 (640)
|+.+|...+=....+.++++| ..|.+.|.++...=..+...|.+.||.+..-.+... .....+.|.|+++.
T Consensus 3 v~viG~G~sG~s~a~~l~~~G--~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s~ 76 (459)
T PRK02705 3 AHVIGLGRSGIAAARLLKAQG--WEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQPWLDQPDLVVVSP 76 (459)
T ss_pred EEEEccCHHHHHHHHHHHHCC--CEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCCEEEECC
Confidence 455544333222344455555 589999988764333344568888988765443321 13456789888854
No 225
>PLN02828 formyltetrahydrofolate deformylase
Probab=35.10 E-value=1.4e+02 Score=31.98 Aligned_cols=73 Identities=16% Similarity=0.221 Sum_probs=43.2
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCC-eeEEEEcCCCC-CchHHHHHHHHHhCCCceEEEec-------hHHHHHhhhccEE
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGK-QFRVVIVDSRP-KHEGKLLLRRLVRKGLSCTYTHI-------NAISYIIHEVTRV 526 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk-~f~ViV~ESRP-~~eG~~La~eL~~~GI~vTlI~D-------sAv~~iM~~VdkV 526 (640)
-.||.-++.+....+|...+ .|. +..|.++=|.+ ...+..+.....+.|||+.+++. ..+...+.++|.+
T Consensus 73 iavlvSg~g~nl~~ll~~~~-~g~l~~eI~~ViSn~~~~~~a~~~~~A~~~gIP~~~~~~~~~~~~e~~~~~~l~~~Dli 151 (268)
T PLN02828 73 IAVLASKQDHCLIDLLHRWQ-DGRLPVDITCVISNHERGPNTHVMRFLERHGIPYHYLPTTKENKREDEILELVKGTDFL 151 (268)
T ss_pred EEEEEcCCChhHHHHHHhhh-cCCCCceEEEEEeCCCCCCCchHHHHHHHcCCCEEEeCCCCCCCHHHHHHHHHhcCCEE
Confidence 35777777777777776554 453 45555444433 22233344455677999997753 2344455578877
Q ss_pred EEc
Q 006577 527 FLG 529 (640)
Q Consensus 527 lvG 529 (640)
++.
T Consensus 152 VLA 154 (268)
T PLN02828 152 VLA 154 (268)
T ss_pred EEe
Confidence 765
No 226
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=35.09 E-value=5.3e+02 Score=27.25 Aligned_cols=101 Identities=25% Similarity=0.247 Sum_probs=62.0
Q ss_pred CEEEeecCc---HHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEE-EechHHH----HHhhh-ccEE
Q 006577 456 DVLLTYGSS---SAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTY-THINAIS----YIIHE-VTRV 526 (640)
Q Consensus 456 dvILT~g~S---stV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTl-I~DsAv~----~iM~~-VdkV 526 (640)
-++|||.|- .-+++++..+.+.|-. -|+|.|= |..|...+...+.+.|++... ++-+.-. .+.+. -++|
T Consensus 92 ~vlm~Y~N~i~~~G~e~f~~~~~~aGvd-GviipDL-p~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s~gfI 169 (258)
T PRK13111 92 IVLMTYYNPIFQYGVERFAADAAEAGVD-GLIIPDL-PPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHASGFV 169 (258)
T ss_pred EEEEecccHHhhcCHHHHHHHHHHcCCc-EEEECCC-CHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcE
Confidence 478998864 4578999999988743 4555554 556888888999999998776 5544422 22222 2333
Q ss_pred EEcceeEecCCC-----eecccchHHHHHHHhhCCCcEEEe
Q 006577 527 FLGASSVLSNGT-----VCSRVGTACVAMVAYGFHIPVLVC 562 (640)
Q Consensus 527 lvGADaIlaNG~-----VvNKiGT~~lAlaAk~~~VPVyV~ 562 (640)
-+ |..+|. -...-....+..+.+..++|++|=
T Consensus 170 Y~----vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~pv~vG 206 (258)
T PRK13111 170 YY----VSRAGVTGARSADAADLAELVARLKAHTDLPVAVG 206 (258)
T ss_pred EE----EeCCCCCCcccCCCccHHHHHHHHHhcCCCcEEEE
Confidence 21 112221 112223345666777779999883
No 227
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=34.97 E-value=1.6e+02 Score=31.36 Aligned_cols=109 Identities=13% Similarity=0.010 Sum_probs=62.0
Q ss_pred cCCCEEEeecCcHHHHH-HHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHH---hCCC-ceEEEe-----chHHHHHhhh
Q 006577 453 RDGDVLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLV---RKGL-SCTYTH-----INAISYIIHE 522 (640)
Q Consensus 453 ~dgdvILT~g~SstV~~-vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~---~~GI-~vTlI~-----DsAv~~iM~~ 522 (640)
..+.+||..|-++.+-. +++.+.++| .+|++++-++......+..... ...+ .+.++. ...+..++++
T Consensus 13 ~~~~~vlVtGatGfiG~~lv~~L~~~g--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~ 90 (348)
T PRK15181 13 LAPKRWLITGVAGFIGSGLLEELLFLN--QTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACKN 90 (348)
T ss_pred ccCCEEEEECCccHHHHHHHHHHHHCC--CEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhhC
Confidence 34578999998887644 344455544 5788777554322222211111 1110 122222 2356677888
Q ss_pred ccEEEEcceeEe---cCC-----CeecccchHHHHHHHhhCCCc-EEEec
Q 006577 523 VTRVFLGASSVL---SNG-----TVCSRVGTACVAMVAYGFHIP-VLVCC 563 (640)
Q Consensus 523 VdkVlvGADaIl---aNG-----~VvNKiGT~~lAlaAk~~~VP-VyV~a 563 (640)
+|.||--|-... .+. .-.|-.||..+.-+|+++++. |+.+.
T Consensus 91 ~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~v~~S 140 (348)
T PRK15181 91 VDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSSFTYAA 140 (348)
T ss_pred CCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEee
Confidence 998887774321 111 125778999999999999985 55443
No 228
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=34.85 E-value=1.2e+02 Score=33.61 Aligned_cols=80 Identities=23% Similarity=0.213 Sum_probs=44.0
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCc--hHHHHHHHHHh--CCCc-eEEEechHHHHHhh--hccEEEE
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKH--EGKLLLRRLVR--KGLS-CTYTHINAISYIIH--EVTRVFL 528 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~--eG~~La~eL~~--~GI~-vTlI~DsAv~~iM~--~VdkVlv 528 (640)
.+||..+.+.....+++.|++.| ++|+++.+.+.. .+..++.+... -+.+ -.|+...++-.+.+ ++|.|+-
T Consensus 3 k~iLi~g~g~~a~~i~~aa~~~G--~~vv~~~~~~d~~a~~~~~ad~~~~~~~~~~~~~y~d~~~l~~~a~~~~id~I~p 80 (451)
T PRK08591 3 DKILIANRGEIALRIIRACKELG--IKTVAVHSTADRDALHVQLADEAVCIGPAPSKKSYLNIPAIISAAEITGADAIHP 80 (451)
T ss_pred ceEEEECCCHHHHHHHHHHHHcC--CeEEEEcChhhccCCCHhHCCEEEEeCCCCcccccCCHHHHHHHHHHhCCCEEEE
Confidence 37899999999999999999876 556666444332 33333311100 0000 02222123333322 6899888
Q ss_pred cceeEecCC
Q 006577 529 GASSVLSNG 537 (640)
Q Consensus 529 GADaIlaNG 537 (640)
|.+-+..++
T Consensus 81 ~~~~~~e~~ 89 (451)
T PRK08591 81 GYGFLSENA 89 (451)
T ss_pred CCCccccCH
Confidence 876555554
No 229
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=34.81 E-value=1e+02 Score=31.18 Aligned_cols=27 Identities=11% Similarity=0.092 Sum_probs=20.4
Q ss_pred ecccchHHHHHHHhhCCCcEEEecccc
Q 006577 540 CSRVGTACVAMVAYGFHIPVLVCCEAY 566 (640)
Q Consensus 540 vNKiGT~~lAlaAk~~~VPVyV~aety 566 (640)
.|-.||..++-+|+.+++.|+.++..+
T Consensus 76 ~n~~~~~~l~~~~~~~~~~~v~~Ss~~ 102 (287)
T TIGR01214 76 VNALAPQNLARAAARHGARLVHISTDY 102 (287)
T ss_pred HHHHHHHHHHHHHHHcCCeEEEEeeee
Confidence 456789999988988888877765543
No 230
>PRK05443 polyphosphate kinase; Provisional
Probab=34.80 E-value=1.1e+02 Score=37.00 Aligned_cols=52 Identities=27% Similarity=0.235 Sum_probs=37.2
Q ss_pred ecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCch--HHHHHHHHHhCCCceEEEe
Q 006577 461 YGSSSAVEMILQHAHELGKQFRVVIVDSRPKHE--GKLLLRRLVRKGLSCTYTH 512 (640)
Q Consensus 461 ~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~e--G~~La~eL~~~GI~vTlI~ 512 (640)
.+..+.+...|..|.++|+..+|+|---.+..+ ....+++|.++|+.|.|-.
T Consensus 376 ~~~~s~iv~aL~~Aa~~Gk~V~vlve~karfde~~n~~~~~~L~~aGv~V~y~~ 429 (691)
T PRK05443 376 TSKDSPIVDALIEAAENGKQVTVLVELKARFDEEANIRWARRLEEAGVHVVYGV 429 (691)
T ss_pred ecCCHHHHHHHHHHHHcCCEEEEEEccCccccHHHHHHHHHHHHHcCCEEEEcc
Confidence 344566777888888899998888765554444 3445689999999997743
No 231
>PRK05967 cystathionine beta-lyase; Provisional
Probab=34.72 E-value=3.6e+02 Score=30.20 Aligned_cols=98 Identities=16% Similarity=0.113 Sum_probs=55.3
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHH-HH-HHHHhCCCceEEEec---hHHHHHhh-hccEEEEc
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKL-LL-RRLVRKGLSCTYTHI---NAISYIIH-EVTRVFLG 529 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~-La-~eL~~~GI~vTlI~D---sAv~~iM~-~VdkVlvG 529 (640)
+.|+|.+-+..+..++....+.|. +|++. .|.+.|-. +. ..|...||.++++.. ..+...+. +..+|++-
T Consensus 81 ~~v~~sSG~aAi~~~l~all~~GD--~Vlv~--~~~Y~~~~~l~~~~l~~~Gi~v~~vd~~~~e~l~~al~~~TklV~le 156 (395)
T PRK05967 81 GTILVPSGLAAVTVPFLGFLSPGD--HALIV--DSVYYPTRHFCDTMLKRLGVEVEYYDPEIGAGIAKLMRPNTKVVHTE 156 (395)
T ss_pred CEEEECcHHHHHHHHHHHhcCCCC--EEEEc--cCCcHHHHHHHHHHHHhcCeEEEEeCCCCHHHHHHhcCcCceEEEEE
Confidence 467776655555556655555554 56665 56666644 34 456678999988853 23444454 34444333
Q ss_pred ceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 530 ADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
. .. | -+....=-..|+-+|++++++|+|
T Consensus 157 s--Ps-N-P~l~v~dl~~I~~la~~~g~~vvV 184 (395)
T PRK05967 157 A--PG-S-NTFEMQDIPAIAEAAHRHGAIVMM 184 (395)
T ss_pred C--CC-C-CCCcHHHHHHHHHHHHHhCCEEEE
Confidence 2 11 1 122222234577788999987776
No 232
>PLN02187 rooty/superroot1
Probab=34.71 E-value=4.1e+02 Score=30.00 Aligned_cols=103 Identities=18% Similarity=0.214 Sum_probs=52.5
Q ss_pred ccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEec---h-------HHHHHhh
Q 006577 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI---N-------AISYIIH 521 (640)
Q Consensus 452 I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D---s-------Av~~iM~ 521 (640)
+...++++|.|.+..+..++....+.| -+|++.+ |.+.+... .+...|+.+..+.. . .+-..+.
T Consensus 129 ~~~~~I~it~G~~~al~~~~~~l~~pG--d~Vlv~~--P~y~~y~~--~~~~~g~~~~~~~l~~~~~~~~d~~~l~~~~~ 202 (462)
T PLN02187 129 LTPEDIFLTAGCNQGIEIVFESLARPN--ANILLPR--PGFPHYDA--RAAYSGLEVRKFDLLPEKEWEIDLEGIEAIAD 202 (462)
T ss_pred CCcccEEEeCCHHHHHHHHHHHhcCCC--CEEEEeC--CCCccHHH--HHHHcCCEEEEEeCccccCCccCHHHHHHhcC
Confidence 455678888888877766666554444 2444443 66555432 23446776665532 1 1112222
Q ss_pred -hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 522 -EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 522 -~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
+..+|++.-=. -.-|.++++-=-..|+-+|+.|++.+++
T Consensus 203 ~~~~~v~i~nP~-NPTG~v~s~e~l~~i~~~a~~~~i~iI~ 242 (462)
T PLN02187 203 ENTVAMVVINPN-NPCGNVYSHDHLKKVAETARKLGIMVIS 242 (462)
T ss_pred CCcEEEEEeCCC-CCCCCccCHHHHHHHHHHHHHCCCEEEE
Confidence 22233322100 1224444433334566678888877765
No 233
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=34.45 E-value=53 Score=37.65 Aligned_cols=77 Identities=12% Similarity=0.123 Sum_probs=42.8
Q ss_pred EEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHH-HHHHHhCCCceEEEechHHHHHhh--hccEEEEcceeE
Q 006577 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLL-LRRLVRKGLSCTYTHINAISYIIH--EVTRVFLGASSV 533 (640)
Q Consensus 457 vILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~L-a~eL~~~GI~vTlI~DsAv~~iM~--~VdkVlvGADaI 533 (640)
+||..|..+-...+...+++..+..+||++.+.+ +-|... +......-+.+.+.....+..+.+ ++|.||+|.+.-
T Consensus 2 kVLviG~Ggrehal~~~l~~s~~g~~v~~~~g~~-Npg~~~~~~~~~~~~~~~~~~d~~~l~~~a~~~~id~Vi~g~E~~ 80 (486)
T PRK05784 2 KVLLVGDGAREHALAEALEKSTKGYKVYALSSYL-NPGINSVVKATGGEYFIGNINSPEEVKKVAKEVNPDLVVIGPEEP 80 (486)
T ss_pred EEEEECCchhHHHHHHHHHhCCCCCEEEEEECCC-ChhheeecccccCceEecCCCCHHHHHHHHHHhCCCEEEECCchH
Confidence 6899998887655555666554567999996633 445432 121111101111122233444444 599999998764
Q ss_pred e
Q 006577 534 L 534 (640)
Q Consensus 534 l 534 (640)
+
T Consensus 81 l 81 (486)
T PRK05784 81 L 81 (486)
T ss_pred H
Confidence 4
No 234
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=34.30 E-value=3.7e+02 Score=29.46 Aligned_cols=108 Identities=12% Similarity=0.100 Sum_probs=66.3
Q ss_pred HHHHHHHhccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCC---------CCC-----chHH----HHHHHHHhC-
Q 006577 444 IVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDS---------RPK-----HEGK----LLLRRLVRK- 504 (640)
Q Consensus 444 Ia~~a~~~I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ES---------RP~-----~eG~----~La~eL~~~- 504 (640)
++..+.+++. +.+||..|..++--.++..+...|.. ++.++|. |-. .-|+ .+++.|.+.
T Consensus 18 ~g~~~q~~L~-~~~VlivG~GGlGs~~a~~La~~Gvg-~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~n 95 (355)
T PRK05597 18 IGQQGQQSLF-DAKVAVIGAGGLGSPALLYLAGAGVG-HITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALN 95 (355)
T ss_pred cCHHHHHHHh-CCeEEEECCCHHHHHHHHHHHHcCCC-eEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHC
Confidence 5566666665 47899999988766666666666754 3333321 111 1121 223667665
Q ss_pred -CCceEEEe----chHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEe
Q 006577 505 -GLSCTYTH----INAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (640)
Q Consensus 505 -GI~vTlI~----DsAv~~iM~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~ 562 (640)
.+.++.+. ...+..+++++|.||.+.|.+ .--+.+.-+|+.++|||+..
T Consensus 96 p~v~v~~~~~~i~~~~~~~~~~~~DvVvd~~d~~---------~~r~~~n~~c~~~~ip~v~~ 149 (355)
T PRK05597 96 PDVKVTVSVRRLTWSNALDELRDADVILDGSDNF---------DTRHLASWAAARLGIPHVWA 149 (355)
T ss_pred CCcEEEEEEeecCHHHHHHHHhCCCEEEECCCCH---------HHHHHHHHHHHHcCCCEEEE
Confidence 34444432 223345678999999988753 23356778899999998864
No 235
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=34.24 E-value=1.5e+02 Score=26.29 Aligned_cols=54 Identities=6% Similarity=0.034 Sum_probs=33.0
Q ss_pred EEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechH--HHHHhhhccEEEEcce
Q 006577 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA--ISYIIHEVTRVFLGAS 531 (640)
Q Consensus 457 vILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsA--v~~iM~~VdkVlvGAD 531 (640)
.||+.|.++..-..+... .+-..|.+.||++.+..-+. +...+.++|.||.+.+
T Consensus 4 kILvvCgsG~~TS~m~~~---------------------ki~~~l~~~gi~~~v~~~~~~e~~~~~~~~D~iv~t~~ 59 (94)
T PRK10310 4 KIIVACGGAVATSTMAAE---------------------EIKELCQSHNIPVELIQCRVNEIETYMDGVHLICTTAR 59 (94)
T ss_pred eEEEECCCchhHHHHHHH---------------------HHHHHHHHCCCeEEEEEecHHHHhhhcCCCCEEEECCc
Confidence 589999888765554322 12245667888777665222 3334457788877763
No 236
>PRK06108 aspartate aminotransferase; Provisional
Probab=34.22 E-value=3.7e+02 Score=28.54 Aligned_cols=96 Identities=14% Similarity=0.126 Sum_probs=50.2
Q ss_pred ccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEech-----------HHHHHh
Q 006577 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN-----------AISYII 520 (640)
Q Consensus 452 I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds-----------Av~~iM 520 (640)
+....+++|.|.+..+..++....+.|. +|++. .|.+.+.. ..+...|+.+..+... .+-..+
T Consensus 82 ~~~~~i~~t~g~~~al~~~~~~l~~~gd--~vl~~--~p~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~ 155 (382)
T PRK06108 82 TPPERIAVTSSGVQALMLAAQALVGPGD--EVVAV--TPLWPNLV--AAPKILGARVVCVPLDFGGGGWTLDLDRLLAAI 155 (382)
T ss_pred cCcceEEEeCChHHHHHHHHHHhcCCCC--EEEEe--CCCccchH--HHHHHCCCEEEEeeCCCCCCCccCCHHHHHHhc
Confidence 3445677887777766555554444343 45553 35544332 3344568877766431 121222
Q ss_pred h-hccEEEEcceeEecCCCeecccchH-------HHHHHHhhCCCcEEE
Q 006577 521 H-EVTRVFLGASSVLSNGTVCSRVGTA-------CVAMVAYGFHIPVLV 561 (640)
Q Consensus 521 ~-~VdkVlvGADaIlaNG~VvNKiGT~-------~lAlaAk~~~VPVyV 561 (640)
. ++..|++ + ..-|..|+. .++-+|+++++.+++
T Consensus 156 ~~~~~~i~l-------~-~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~ 196 (382)
T PRK06108 156 TPRTRALFI-------N-SPNNPTGWTASRDDLRAILAHCRRHGLWIVA 196 (382)
T ss_pred CccceEEEE-------E-CCCCCCCcccCHHHHHHHHHHHHHCCcEEEE
Confidence 2 2333333 1 133566643 366678889987664
No 237
>PRK06225 aspartate aminotransferase; Provisional
Probab=34.17 E-value=3.1e+02 Score=29.38 Aligned_cols=102 Identities=15% Similarity=0.114 Sum_probs=51.2
Q ss_pred cCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEe-ch----------HHHHHhh
Q 006577 453 RDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-IN----------AISYIIH 521 (640)
Q Consensus 453 ~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~-Ds----------Av~~iM~ 521 (640)
....+++|.|.+..+..++..+...|. +|++.+ |.+.... ..+...|..+..+. +. .+...+.
T Consensus 82 ~~~~v~~~~g~t~al~~~~~~~~~~gd--~vl~~~--p~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~ 155 (380)
T PRK06225 82 DDDEALITAGATESLYLVMRAFLSPGD--NAVTPD--PGYLIID--NFASRFGAEVIEVPIYSEECNYKLTPELVKENMD 155 (380)
T ss_pred CCCcEEEeCCHHHHHHHHHHHhcCCCC--EEEEcC--CCCcchH--HHHHHhCceEEeeccccccCCccCCHHHHHhhcC
Confidence 445788888888777766665544443 455554 5443222 34445677777665 21 1111111
Q ss_pred -hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 522 -EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 522 -~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
++..|++- .--...|.++++-=-..++-+|++|++++++
T Consensus 156 ~~~~~v~l~-~p~NptG~~~~~~~~~~i~~~a~~~~~~ii~ 195 (380)
T PRK06225 156 ENTRLIYLI-DPLNPLGSSYTEEEIKEFAEIARDNDAFLLH 195 (380)
T ss_pred CCceEEEEe-CCCCCCCcCCCHHHHHHHHHHHHHCCcEEEE
Confidence 22222211 1111223332222123466678999998876
No 238
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=34.11 E-value=3.2e+02 Score=28.30 Aligned_cols=53 Identities=8% Similarity=0.019 Sum_probs=32.2
Q ss_pred HHHHHHHhCCCc-eEEEechHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEe
Q 006577 496 LLLRRLVRKGLS-CTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (640)
Q Consensus 496 ~La~eL~~~GI~-vTlI~DsAv~~iM~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~ 562 (640)
.+-..+.+.|+. .......-+..+|+.+|.+++- .|+ ...+=|-..|+|++++
T Consensus 223 ~l~~~~~~~~l~~~v~~~~~~~~~~l~~ad~~v~~-------------~g~-~~l~Ea~~~g~Pvv~~ 276 (348)
T TIGR01133 223 KVKNVYQELGIEAIVTFIDENMAAAYAAADLVISR-------------AGA-STVAELAAAGVPAILI 276 (348)
T ss_pred HHHHHHhhCCceEEecCcccCHHHHHHhCCEEEEC-------------CCh-hHHHHHHHcCCCEEEe
Confidence 444555566763 2222333678899999998852 131 2334556689999986
No 239
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=34.09 E-value=4.6e+02 Score=27.28 Aligned_cols=96 Identities=19% Similarity=0.199 Sum_probs=50.0
Q ss_pred CEE-EeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEec--------------hHHHHHh
Q 006577 456 DVL-LTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--------------NAISYII 520 (640)
Q Consensus 456 dvI-LT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D--------------sAv~~iM 520 (640)
.++ +|-|.+..+..+|..+...| -+|++. ||.+....- .+...|+.+.++.- ..+-..+
T Consensus 76 ~~~~~~~Gst~a~~~~l~al~~~g--d~Vlv~--~~~h~s~~~--~~~~~g~~~~~v~~~~~~~~~~~~~i~~~~l~~~l 149 (294)
T cd00615 76 HTFFLVNGTSSSNKAVILAVCGPG--DKILID--RNCHKSVIN--GLVLSGAVPVYLKPERNPYYGIAGGIPPETFKKAL 149 (294)
T ss_pred CEEEEcCcHHHHHHHHHHHcCCCC--CEEEEe--CCchHHHHH--HHHHCCCEEEEecCccCcccCcCCCCCHHHHHHHH
Confidence 344 46554455555555544333 345544 454444322 23335666555521 1233333
Q ss_pred h---hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEe
Q 006577 521 H---EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (640)
Q Consensus 521 ~---~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~ 562 (640)
. ++..|++... ...|.++. --.|+-+|+.++++++|=
T Consensus 150 ~~~~~~k~v~l~~p--~~~G~~~d---l~~I~~~~~~~g~~livD 189 (294)
T cd00615 150 IEHPDAKAAVITNP--TYYGICYN---LRKIVEEAHHRGLPVLVD 189 (294)
T ss_pred HhCCCceEEEEECC--CCCCEecC---HHHHHHHHHhcCCeEEEE
Confidence 2 3556666532 23565554 346888899999998873
No 240
>PRK13937 phosphoheptose isomerase; Provisional
Probab=34.05 E-value=4.7e+02 Score=25.78 Aligned_cols=35 Identities=6% Similarity=-0.076 Sum_probs=27.4
Q ss_pred HHHHHHHHhCCCceEEEechHHHHHhhhccEEEEc
Q 006577 495 KLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLG 529 (640)
Q Consensus 495 ~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvG 529 (640)
.+.++.+.+.|+++..|+.+.-+.+.+.+|.+|.-
T Consensus 123 ~~~~~~ak~~g~~~I~iT~~~~s~L~~~ad~~l~~ 157 (188)
T PRK13937 123 LAALEKARELGMKTIGLTGRDGGKMKELCDHLLIV 157 (188)
T ss_pred HHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEEe
Confidence 44557888889999999988878887788887753
No 241
>PRK08618 ornithine cyclodeaminase; Validated
Probab=34.04 E-value=2.6e+02 Score=30.04 Aligned_cols=89 Identities=16% Similarity=0.168 Sum_probs=55.1
Q ss_pred CCCEEEeecCcHHHHHHHHHHHHcCCee-EEEEcCCCCCchHHHHHHHHHh-CCCceEEEechHHHHHhhhccEEEEcce
Q 006577 454 DGDVLLTYGSSSAVEMILQHAHELGKQF-RVVIVDSRPKHEGKLLLRRLVR-KGLSCTYTHINAISYIIHEVTRVFLGAS 531 (640)
Q Consensus 454 dgdvILT~g~SstV~~vL~~A~e~Gk~f-~ViV~ESRP~~eG~~La~eL~~-~GI~vTlI~DsAv~~iM~~VdkVlvGAD 531 (640)
+..+|+.+|........+...... +.+ +|+|. +|-.-...+++.+|.+ .|+++....| ...++.++|.|+...-
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~-~~~~~v~v~-~r~~~~a~~~~~~~~~~~~~~~~~~~~--~~~~~~~aDiVi~aT~ 201 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAV-RDIERVRVY-SRTFEKAYAFAQEIQSKFNTEIYVVNS--ADEAIEEADIIVTVTN 201 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhc-CCccEEEEE-CCCHHHHHHHHHHHHHhcCCcEEEeCC--HHHHHhcCCEEEEccC
Confidence 567899999988776666544332 233 45555 4444456677777764 3777665544 2345578999887421
Q ss_pred -------eEecCCCeecccchH
Q 006577 532 -------SVLSNGTVCSRVGTA 546 (640)
Q Consensus 532 -------aIlaNG~VvNKiGT~ 546 (640)
..+..|..++-+|++
T Consensus 202 s~~p~i~~~l~~G~hV~~iGs~ 223 (325)
T PRK08618 202 AKTPVFSEKLKKGVHINAVGSF 223 (325)
T ss_pred CCCcchHHhcCCCcEEEecCCC
Confidence 344667777777775
No 242
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=33.97 E-value=1.9e+02 Score=31.40 Aligned_cols=108 Identities=9% Similarity=-0.048 Sum_probs=59.7
Q ss_pred HhccCCCEEEeecCcHHHHHHH-HHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEec----hHHHHHhhhcc
Q 006577 450 TKIRDGDVLLTYGSSSAVEMIL-QHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI----NAISYIIHEVT 524 (640)
Q Consensus 450 ~~I~dgdvILT~g~SstV~~vL-~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D----sAv~~iM~~Vd 524 (640)
.+...+.+||..|-++.|-.-| ..+.++| .+|++++-++.. ..... ..++.. +..| ..+..++.++|
T Consensus 16 ~~~~~~~~IlVtGgtGfIG~~l~~~L~~~G--~~V~~v~r~~~~----~~~~~-~~~~~~-~~~Dl~d~~~~~~~~~~~D 87 (370)
T PLN02695 16 YWPSEKLRICITGAGGFIASHIARRLKAEG--HYIIASDWKKNE----HMSED-MFCHEF-HLVDLRVMENCLKVTKGVD 87 (370)
T ss_pred CCCCCCCEEEEECCccHHHHHHHHHHHhCC--CEEEEEEecccc----ccccc-cccceE-EECCCCCHHHHHHHHhCCC
Confidence 3455678899999988775544 4454555 567766533210 00000 011111 2223 23444567899
Q ss_pred EEEEcceeEe------cCCC---eecccchHHHHHHHhhCCCcEEEeccc
Q 006577 525 RVFLGASSVL------SNGT---VCSRVGTACVAMVAYGFHIPVLVCCEA 565 (640)
Q Consensus 525 kVlvGADaIl------aNG~---VvNKiGT~~lAlaAk~~~VPVyV~aet 565 (640)
.||--|-.+. .+-. -.|-.||..+.-+|+.+++.-+|.+.+
T Consensus 88 ~Vih~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~~V~~SS 137 (370)
T PLN02695 88 HVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASS 137 (370)
T ss_pred EEEEcccccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCEEEEeCc
Confidence 8887663221 1111 136779999999999999865554443
No 243
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=33.96 E-value=1.7e+02 Score=33.52 Aligned_cols=66 Identities=20% Similarity=0.243 Sum_probs=45.0
Q ss_pred HHHHHhCCCceEEEechH--------HHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhh----CCCcEEEeccc
Q 006577 498 LRRLVRKGLSCTYTHINA--------ISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYG----FHIPVLVCCEA 565 (640)
Q Consensus 498 a~eL~~~GI~vTlI~DsA--------v~~iM~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~----~~VPVyV~aet 565 (640)
+..|.+.||++++|.... +-...++...|| ++.+|....-+|+...+.++.+ ...||.-++-.
T Consensus 359 a~~L~~~GI~~~VIdl~tlkPlD~~~i~~sv~kt~~vv-----tvEE~~~~gGlG~~va~~l~e~~f~~l~~pv~ri~~~ 433 (464)
T PRK11892 359 AEELAKEGIDAEVIDLRTIRPMDTETIVESVKKTNRLV-----TVEEGWPQSGVGAEIAARVMEQAFDYLDAPVLRVTGK 433 (464)
T ss_pred HHHHHhcCCCEEEEECCCCCcCCHHHHHHHHHhcCeEE-----EEeCCCcCCcHHHHHHHHHHHhCccccCCCeEEeccC
Confidence 456666777777775443 334444666664 5678888888999999998886 36788877654
Q ss_pred ccc
Q 006577 566 YKF 568 (640)
Q Consensus 566 yKf 568 (640)
..|
T Consensus 434 d~~ 436 (464)
T PRK11892 434 DVP 436 (464)
T ss_pred Ccc
Confidence 433
No 244
>TIGR00858 bioF 8-amino-7-oxononanoate synthase. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.
Probab=33.93 E-value=4.5e+02 Score=27.31 Aligned_cols=93 Identities=13% Similarity=0.064 Sum_probs=43.3
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEech---HHHHHhhhc----cEEEE
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN---AISYIIHEV----TRVFL 528 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds---Av~~iM~~V----dkVlv 528 (640)
+.|++.+.+..+..+|..+.+.|. .|++. .|.+...... +...|+++..+... .+-..+... .++++
T Consensus 78 ~~i~~~~G~~~~~~~l~~~~~~gd--~v~~~--~~~~~~~~~~--~~~~g~~~~~~~~~d~~~l~~~~~~~~~~~~~~v~ 151 (360)
T TIGR00858 78 AALLFSSGYLANVGVISALVGKGD--LILSD--ALNHASLIDG--CRLSGARVRRYRHNDVEHLERLLEKNRGERRKLIV 151 (360)
T ss_pred CEEEECchHHHHHHHHHHhCCCCC--EEEEE--ccccHHHHHH--HHhcCCceEEecCCCHHHHHHHHHHcccCCCeEEE
Confidence 344443334444445544433332 34443 3554433322 33457777665422 233333321 23333
Q ss_pred cceeEecCCCeecccc----hHHHHHHHhhCCCcEEE
Q 006577 529 GASSVLSNGTVCSRVG----TACVAMVAYGFHIPVLV 561 (640)
Q Consensus 529 GADaIlaNG~VvNKiG----T~~lAlaAk~~~VPVyV 561 (640)
-+.+.|..| -..|+-+|+.+++.+++
T Consensus 152 -------~~~~~~~~G~~~~~~~i~~l~~~~~~~li~ 181 (360)
T TIGR00858 152 -------TDGVFSMDGDIAPLPQLVALAERYGAWLMV 181 (360)
T ss_pred -------EeCCccCCCCCcCHHHHHHHHHHcCcEEEE
Confidence 122334444 34566788999987776
No 245
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=33.80 E-value=2.6e+02 Score=30.12 Aligned_cols=113 Identities=16% Similarity=0.126 Sum_probs=68.2
Q ss_pred HHHHHHHhccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCc--------------hHH----HHHHHHHhCC
Q 006577 444 IVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKH--------------EGK----LLLRRLVRKG 505 (640)
Q Consensus 444 Ia~~a~~~I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~--------------eG~----~La~eL~~~G 505 (640)
++..+..+|. +..||..|..+.-..+++...-.|.+ ++.++|..+.- -|+ .++..|.+.+
T Consensus 9 ~G~eaq~kL~-~s~VLIvG~gGLG~EiaKnLalaGVg-~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLN 86 (286)
T cd01491 9 LGHEAMKKLQ-KSNVLISGLGGLGVEIAKNLILAGVK-SVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELN 86 (286)
T ss_pred cCHHHHHHHh-cCcEEEEcCCHHHHHHHHHHHHcCCC-eEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHC
Confidence 3444555554 46788899998877777777777865 55555544311 122 2235666654
Q ss_pred --CceEEEechHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEecccccc
Q 006577 506 --LSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKF 568 (640)
Q Consensus 506 --I~vTlI~DsAv~~iM~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~aetyKf 568 (640)
++++.+...-....+.+.|.||...|.+. . -..+.-+|+.++|||+.+ .++-|
T Consensus 87 p~V~V~~~~~~~~~~~l~~fdvVV~~~~~~~------~---~~~in~~c~~~~ipfI~a-~~~G~ 141 (286)
T cd01491 87 PYVPVTVSTGPLTTDELLKFQVVVLTDASLE------D---QLKINEFCHSPGIKFISA-DTRGL 141 (286)
T ss_pred CCCEEEEEeccCCHHHHhcCCEEEEecCCHH------H---HHHHHHHHHHcCCEEEEE-ecccc
Confidence 66666665433456678998877655321 1 123445788899999884 44443
No 246
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=33.63 E-value=2.3e+02 Score=31.21 Aligned_cols=49 Identities=14% Similarity=0.225 Sum_probs=33.6
Q ss_pred HHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhC----CCcEEEeccccccc
Q 006577 516 ISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGF----HIPVLVCCEAYKFH 569 (640)
Q Consensus 516 v~~iM~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~----~VPVyV~aetyKf~ 569 (640)
+-..+++.+.||+ +.++....-.|+.....++.+. .+|+.-+|-...|.
T Consensus 278 i~~~~~~~~~Ivv-----vEE~~~~GGlG~~Va~~l~e~~~~~l~~pv~ri~~~d~~~ 330 (355)
T PTZ00182 278 IVKSVKKTGRCVI-----VHEAPPTCGIGAEIAAQIMEDCFLYLEAPIKRVCGADTPF 330 (355)
T ss_pred HHHHHhcCCEEEE-----EEeCCCCCCHHHHHHHHHHHhhhhhcCCCeEEeCCCCccC
Confidence 3445566777754 5677777778888888888775 67888766554443
No 247
>COG2014 Uncharacterized conserved protein [Function unknown]
Probab=33.62 E-value=72 Score=33.41 Aligned_cols=100 Identities=15% Similarity=0.185 Sum_probs=60.7
Q ss_pred HHHhccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhccEEE
Q 006577 448 AVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVF 527 (640)
Q Consensus 448 a~~~I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVl 527 (640)
..++|+.+|.|--+++=+-.--.++... .+|.||+.|-.|.+--+ -..+|.....+++++|.++
T Consensus 106 il~li~~~d~IkmI~~fg~m~p~v~~l~---ek~~v~~~er~~~~pkr-------------~t~~d~~e~~iLP~~Dvii 169 (250)
T COG2014 106 ILDLIQRDDKIKMIAEFGNMPPVVRTLK---EKFEVYVFERNPKLPKR-------------GTLSDTLEYQILPEVDVII 169 (250)
T ss_pred HHHHHcCCCceeEEEecCCCChHHHHhh---hheEEEEeccCccCccc-------------ccccchhhhhhcccccEEE
Confidence 3567777775444433322222333333 47999999988875322 2467888899999999999
Q ss_pred EcceeEecCCCeecccchHHHHHHHhhCCCc-EEEecccccccccc
Q 006577 528 LGASSVLSNGTVCSRVGTACVAMVAYGFHIP-VLVCCEAYKFHERV 572 (640)
Q Consensus 528 vGADaIlaNG~VvNKiGT~~lAlaAk~~~VP-VyV~aetyKf~~~~ 572 (640)
+.|.++. ||+ .-.- ++.+-.-. |+.+.||--+.+.+
T Consensus 170 ~SaStlv-N~T-------~d~~-Ld~ak~ak~vvl~GPTa~l~pe~ 206 (250)
T COG2014 170 ASASTLV-NGT-------LDMI-LDRAKKAKLVVLTGPTAQLLPEF 206 (250)
T ss_pred Eechhhh-cCc-------HHHH-HhhhccCcEEEEeCCCcccchhH
Confidence 9998876 653 3332 33333333 44456665554433
No 248
>PRK07324 transaminase; Validated
Probab=33.58 E-value=2.7e+02 Score=30.01 Aligned_cols=103 Identities=17% Similarity=0.235 Sum_probs=56.4
Q ss_pred ccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEec----------hHHHHHhh
Q 006577 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI----------NAISYIIH 521 (640)
Q Consensus 452 I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D----------sAv~~iM~ 521 (640)
+....+|+|.|.+..+..++......|. +|++. .|.+.+.. ..+...|..+..+.. ..+...+.
T Consensus 78 ~~~~~vi~t~G~~~al~~~~~~l~~~gd--~Vl~~--~P~y~~~~--~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~ 151 (373)
T PRK07324 78 VKPENILQTNGATGANFLVLYALVEPGD--HVISV--YPTYQQLY--DIPESLGAEVDYWQLKEENGWLPDLDELRRLVR 151 (373)
T ss_pred CChhhEEEcCChHHHHHHHHHHhCCCCC--EEEEc--CCCchhHH--HHHHHcCCEEEEEecccccCCCCCHHHHHHhCC
Confidence 3445678888888776666655544443 45553 46665433 233446777766652 12222222
Q ss_pred -hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 522 -EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 522 -~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
++..|++. .-=-..|.++++.--..++-+|++|++.+++
T Consensus 152 ~~~kli~i~-~p~NPtG~~~~~~~l~~i~~~a~~~~~~ii~ 191 (373)
T PRK07324 152 PNTKLICIN-NANNPTGALMDRAYLEEIVEIARSVDAYVLS 191 (373)
T ss_pred CCCcEEEEe-CCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 34444332 2222345555554456677788999986664
No 249
>PRK05957 aspartate aminotransferase; Provisional
Probab=33.49 E-value=4.3e+02 Score=28.56 Aligned_cols=93 Identities=14% Similarity=0.143 Sum_probs=51.9
Q ss_pred CCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEech--------HHHHHhh-hccE
Q 006577 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN--------AISYIIH-EVTR 525 (640)
Q Consensus 455 gdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds--------Av~~iM~-~Vdk 525 (640)
.++++|.|.+..+..++....+.|. +|++. .|.+.+.... +...|+.+.++... .+-..+. ++..
T Consensus 90 ~~i~~t~G~~~~l~~~~~~~~~~gd--~Vlv~--~P~y~~~~~~--~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~kl 163 (389)
T PRK05957 90 QAIVVTAGSNMAFMNAILAITDPGD--EIILN--TPYYFNHEMA--ITMAGCQPILVPTDDNYQLQPEAIEQAITPKTRA 163 (389)
T ss_pred CeEEEeCChHHHHHHHHHHhcCCCC--EEEEe--CCCCcCHHHH--HHhcCCEEEEeecCCCCCcCHHHHHHhcCcCceE
Confidence 4577788877766655655444442 45543 4766555433 34578887776432 1222222 3333
Q ss_pred EEEcceeEecCCCeecccchH-------HHHHHHhhCCCcEEE
Q 006577 526 VFLGASSVLSNGTVCSRVGTA-------CVAMVAYGFHIPVLV 561 (640)
Q Consensus 526 VlvGADaIlaNG~VvNKiGT~-------~lAlaAk~~~VPVyV 561 (640)
|++- | .-|..|+. .++-+|+.+++.+++
T Consensus 164 v~~~------~--p~NPtG~~~~~~~~~~i~~~a~~~~~~li~ 198 (389)
T PRK05957 164 IVTI------S--PNNPTGVVYPEALLRAVNQICAEHGIYHIS 198 (389)
T ss_pred EEEe------C--CCCCCCcCcCHHHHHHHHHHHHHcCcEEEE
Confidence 3321 2 34677743 366778999987775
No 250
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=33.42 E-value=4.3e+02 Score=28.95 Aligned_cols=42 Identities=21% Similarity=0.240 Sum_probs=29.7
Q ss_pred CCceEEEechHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEe
Q 006577 505 GLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (640)
Q Consensus 505 GI~vTlI~DsAv~~iM~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~ 562 (640)
+..+..+.+.+ ..+|..+|.+|+-+ ||..+ =|-.+|+|++++
T Consensus 251 ~~~v~~~~~~~-~~~l~aADl~V~~S-------------Gt~tl--Ea~a~G~P~Vv~ 292 (385)
T TIGR00215 251 DLQLHLIDGDA-RKAMFAADAALLAS-------------GTAAL--EAALIKTPMVVG 292 (385)
T ss_pred CCcEEEECchH-HHHHHhCCEEeecC-------------CHHHH--HHHHcCCCEEEE
Confidence 45666565544 46889999987765 66544 455689999998
No 251
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=33.22 E-value=2e+02 Score=29.40 Aligned_cols=70 Identities=19% Similarity=0.226 Sum_probs=42.1
Q ss_pred EEEeecCcHHHHHHHHHHHHcCCeeE-EEEcCCCCCchHHHHHHHHHhCCCceEEEe----------chHHHHHhh--hc
Q 006577 457 VLLTYGSSSAVEMILQHAHELGKQFR-VVIVDSRPKHEGKLLLRRLVRKGLSCTYTH----------INAISYIIH--EV 523 (640)
Q Consensus 457 vILT~g~SstV~~vL~~A~e~Gk~f~-ViV~ESRP~~eG~~La~eL~~~GI~vTlI~----------DsAv~~iM~--~V 523 (640)
.||.-|+.+.++.++....+...+.+ ++|+-++|..++.+++. +.||++..+. +..+...|+ ++
T Consensus 3 ~vl~Sg~Gsn~~al~~~~~~~~l~~~i~~visn~~~~~~~~~A~---~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 79 (207)
T PLN02331 3 AVFVSGGGSNFRAIHDACLDGRVNGDVVVVVTNKPGCGGAEYAR---ENGIPVLVYPKTKGEPDGLSPDELVDALRGAGV 79 (207)
T ss_pred EEEEeCCChhHHHHHHHHHcCCCCeEEEEEEEeCCCChHHHHHH---HhCCCEEEeccccCCCcccchHHHHHHHHhcCC
Confidence 46666666776666655443333444 44556778887766544 4599987654 234444455 58
Q ss_pred cEEEEc
Q 006577 524 TRVFLG 529 (640)
Q Consensus 524 dkVlvG 529 (640)
|.+++.
T Consensus 80 Dliv~a 85 (207)
T PLN02331 80 DFVLLA 85 (207)
T ss_pred CEEEEe
Confidence 888773
No 252
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=33.20 E-value=4.3e+02 Score=29.05 Aligned_cols=98 Identities=15% Similarity=0.125 Sum_probs=50.0
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchH-HHHHHHHH-hCCCceEEEec---hHHHHHhh-hccEEEEc
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEG-KLLLRRLV-RKGLSCTYTHI---NAISYIIH-EVTRVFLG 529 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG-~~La~eL~-~~GI~vTlI~D---sAv~~iM~-~VdkVlvG 529 (640)
.+++|-|.+..+..++....+.|. +|++ ..|.+.| ..+...+. ..|+.+.++.. ..+...+. +..+|++.
T Consensus 68 ~v~~~~gg~~Ai~~~l~all~~GD--~Vl~--~~p~y~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~ai~~~tklV~l~ 143 (382)
T TIGR02080 68 GAVVTNTGMSAIHLVTTALLGPDD--LLVA--PHDCYGGTYRLLNALAKKGCFRVLFVDQGDEQALRAALAQKPKLVLIE 143 (382)
T ss_pred cEEEEcCHHHHHHHHHHHHcCCCC--EEEE--cCCCcHHHHHHHHHHHhhcCeEEEEECCCCHHHHHHhcCcCceEEEEE
Confidence 455555555555555555544443 4444 3466665 34444443 44678877632 22333332 34444432
Q ss_pred ceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 530 ADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
.---..|.++. -..|+-+|+.+++.++|
T Consensus 144 -~p~NPtG~~~d---l~~I~~la~~~g~~vvv 171 (382)
T TIGR02080 144 -TPSNPLLRVVD---IAKICHLAKAVGAVVVV 171 (382)
T ss_pred -CCCCCCCEecC---HHHHHHHHHHcCCEEEE
Confidence 11223354443 24677778889987665
No 253
>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]
Probab=33.17 E-value=99 Score=36.95 Aligned_cols=44 Identities=30% Similarity=0.425 Sum_probs=29.1
Q ss_pred HHHHHHHHHHcCCeeEEEEcCCCCCc-hH--HHHHHHHHhCCCceEEE
Q 006577 467 VEMILQHAHELGKQFRVVIVDSRPKH-EG--KLLLRRLVRKGLSCTYT 511 (640)
Q Consensus 467 V~~vL~~A~e~Gk~f~ViV~ESRP~~-eG--~~La~eL~~~GI~vTlI 511 (640)
+...|.+|.++||+..|.| |=.-++ |- ...|+.|.++|+.|.|-
T Consensus 386 IV~ALi~AA~nGKqVtvlV-ELkARFDEE~NI~WAk~LE~AGvhVvyG 432 (696)
T COG0855 386 IVRALIDAAENGKQVTVLV-ELKARFDEEANIHWAKRLERAGVHVVYG 432 (696)
T ss_pred HHHHHHHHHHcCCeEEEEE-EEhhhcChhhhhHHHHHHHhCCcEEEec
Confidence 4455666667899887765 333222 22 34578999999998874
No 254
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=33.06 E-value=85 Score=27.94 Aligned_cols=86 Identities=14% Similarity=0.053 Sum_probs=54.5
Q ss_pred CCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEcceeE
Q 006577 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSV 533 (640)
Q Consensus 454 dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGADaI 533 (640)
.|..||..|.+.....-++.+.+.|-+++||-.+. ...+ ..+ +++...- ...|..+++|++..+-
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~-------~~~~----~~i--~~~~~~~-~~~l~~~~lV~~at~d- 70 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI-------EFSE----GLI--QLIRREF-EEDLDGADLVFAATDD- 70 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE-------HHHH----TSC--EEEESS--GGGCTTESEEEE-SS--
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch-------hhhh----hHH--HHHhhhH-HHHHhhheEEEecCCC-
Confidence 46789999999988888888887787777776655 1111 222 2333322 2346677877765432
Q ss_pred ecCCCeecccchHHHHHHHhhCCCcEEEe
Q 006577 534 LSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (640)
Q Consensus 534 laNG~VvNKiGT~~lAlaAk~~~VPVyV~ 562 (640)
..-.-.+...|+.+++||.++
T Consensus 71 --------~~~n~~i~~~a~~~~i~vn~~ 91 (103)
T PF13241_consen 71 --------PELNEAIYADARARGILVNVV 91 (103)
T ss_dssp --------HHHHHHHHHHHHHTTSEEEET
T ss_pred --------HHHHHHHHHHHhhCCEEEEEC
Confidence 223356788999999999996
No 255
>PRK06141 ornithine cyclodeaminase; Validated
Probab=33.02 E-value=3.3e+02 Score=29.22 Aligned_cols=90 Identities=17% Similarity=0.197 Sum_probs=55.0
Q ss_pred CCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEccee-
Q 006577 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASS- 532 (640)
Q Consensus 454 dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGADa- 532 (640)
+..+|+.+|........+..........+|+|.. |-......|+.++.+.|+++... ++ ....+.++|.|+.....
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~-Rs~~~a~~~a~~~~~~g~~~~~~-~~-~~~av~~aDIVi~aT~s~ 200 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWG-RDPAKAEALAAELRAQGFDAEVV-TD-LEAAVRQADIISCATLST 200 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEc-CCHHHHHHHHHHHHhcCCceEEe-CC-HHHHHhcCCEEEEeeCCC
Confidence 5678999998776666655444322234566554 54445667788887777766543 32 34456789988664321
Q ss_pred -------EecCCCeecccchH
Q 006577 533 -------VLSNGTVCSRVGTA 546 (640)
Q Consensus 533 -------IlaNG~VvNKiGT~ 546 (640)
.+..|.+++-+|++
T Consensus 201 ~pvl~~~~l~~g~~i~~ig~~ 221 (314)
T PRK06141 201 EPLVRGEWLKPGTHLDLVGNF 221 (314)
T ss_pred CCEecHHHcCCCCEEEeeCCC
Confidence 23456777777765
No 256
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=32.97 E-value=1.3e+02 Score=31.38 Aligned_cols=81 Identities=15% Similarity=0.183 Sum_probs=47.5
Q ss_pred CeeEEEEcCCCCCchHHHHHHHHHhCCCceEE-EechHHHHHhhhccEEEEcceeEecCCCeeccc-chHHHHHHHhhCC
Q 006577 479 KQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTY-THINAISYIIHEVTRVFLGASSVLSNGTVCSRV-GTACVAMVAYGFH 556 (640)
Q Consensus 479 k~f~ViV~ESRP~~eG~~La~eL~~~GI~vTl-I~DsAv~~iM~~VdkVlvGADaIlaNG~VvNKi-GT~~lAlaAk~~~ 556 (640)
...+++|+-..|... .+ ..||.... ..--.+-..+.++|.||+|-..++.|..-.... --+.+..+|+.++
T Consensus 27 ~~~~~~v~s~~p~~~----~~---~~~v~~~~r~~~~~~~~~l~~~D~vI~gGG~l~~d~~~~~~~~~~~~~~~~a~~~~ 99 (298)
T TIGR03609 27 PGVEPTVLSNDPAET----AK---LYGVEAVNRRSLLAVLRALRRADVVIWGGGSLLQDVTSFRSLLYYLGLMRLARLFG 99 (298)
T ss_pred CCCeEEEecCChHHH----Hh---hcCceEEccCCHHHHHHHHHHCCEEEECCcccccCCcccccHHHHHHHHHHHHHcC
Confidence 445566664455432 11 12554332 122245556779999999998888765322111 1123567889999
Q ss_pred CcEEEecccc
Q 006577 557 IPVLVCCEAY 566 (640)
Q Consensus 557 VPVyV~aety 566 (640)
+|+++++.+.
T Consensus 100 k~~~~~g~gi 109 (298)
T TIGR03609 100 KPVILWGQGI 109 (298)
T ss_pred CCEEEEeccc
Confidence 9999887654
No 257
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=32.75 E-value=5.8e+02 Score=26.43 Aligned_cols=110 Identities=14% Similarity=0.070 Sum_probs=65.8
Q ss_pred HHHHHHHHhccCCCEEEeecCcHHHHHHHHHHHHcCCe-eEEE---EcC-CCC---Cc-----hHH----HHHHHHHhCC
Q 006577 443 VIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQ-FRVV---IVD-SRP---KH-----EGK----LLLRRLVRKG 505 (640)
Q Consensus 443 ~Ia~~a~~~I~dgdvILT~g~SstV~~vL~~A~e~Gk~-f~Vi---V~E-SRP---~~-----eG~----~La~eL~~~G 505 (640)
.++..+.++|.+ ..|+..|..++--.++..+...|.. |.++ ++| +.= .+ -|+ .++++|.+..
T Consensus 21 ~~g~~~Q~~L~~-~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~ln 99 (245)
T PRK05690 21 GFDFDGQEKLKA-ARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARIN 99 (245)
T ss_pred hcCHHHHHHhcC-CeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHC
Confidence 356666677754 7888889887766666666666754 4443 111 111 00 121 2235666543
Q ss_pred --CceEEEe----chHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEe
Q 006577 506 --LSCTYTH----INAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (640)
Q Consensus 506 --I~vTlI~----DsAv~~iM~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~ 562 (640)
+.++.+. ...+..+++++|.||...|... --+.+.-+|+.+++|++..
T Consensus 100 p~v~i~~~~~~i~~~~~~~~~~~~DiVi~~~D~~~---------~r~~ln~~~~~~~ip~v~~ 153 (245)
T PRK05690 100 PHIAIETINARLDDDELAALIAGHDLVLDCTDNVA---------TRNQLNRACFAAKKPLVSG 153 (245)
T ss_pred CCCEEEEEeccCCHHHHHHHHhcCCEEEecCCCHH---------HHHHHHHHHHHhCCEEEEe
Confidence 4444433 2234556789999998887431 2356777899999999864
No 258
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=32.57 E-value=3.2e+02 Score=23.33 Aligned_cols=38 Identities=13% Similarity=0.094 Sum_probs=24.8
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEe
Q 006577 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (640)
Q Consensus 522 ~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~ 562 (640)
++|+||+|++..- .+-...-+...--++++..+||+|+
T Consensus 102 ~~dliv~G~~~~~---~~~~~~~gs~~~~l~~~~~~pVlvv 139 (140)
T PF00582_consen 102 NADLIVMGSRGRS---GLERLLFGSVAEKLLRHAPCPVLVV 139 (140)
T ss_dssp TCSEEEEESSSTT---STTTSSSHHHHHHHHHHTSSEEEEE
T ss_pred cceeEEEeccCCC---CccCCCcCCHHHHHHHcCCCCEEEe
Confidence 7999999998822 2222223333445567888999986
No 259
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=32.44 E-value=1e+02 Score=27.88 Aligned_cols=53 Identities=11% Similarity=0.021 Sum_probs=32.7
Q ss_pred CCceEEEechHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEecc
Q 006577 505 GLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCE 564 (640)
Q Consensus 505 GI~vTlI~DsAv~~iM~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~ae 564 (640)
|+++.++.|......+.+=|.+|+ |...| +..-+..++-.|+++++|+++++.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~dl~I~----iS~SG---~t~e~i~~~~~a~~~g~~iI~IT~ 78 (119)
T cd05017 26 KIPVYVVKDYTLPAFVDRKTLVIA----VSYSG---NTEETLSAVEQAKERGAKIVAITS 78 (119)
T ss_pred CCCEEEecCccCcCCCCCCCEEEE----EECCC---CCHHHHHHHHHHHHCCCEEEEEeC
Confidence 677777766443333444555543 33444 223355666788999999998875
No 260
>TIGR01110 mdcA malonate decarboxylase, alpha subunit. This model describes malonate decarboxylase alpha subunit, from both the water-soluble form as found in Klebsiella pneumoniae and the form couple to sodium ion pumping in Malonomonas rubra. Malonate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases. Essentially, it couples the energy derived from decarboxylation of a carboxylic acid substrate to move Na+ ion across the bilayer. Functional malonate decarboylase is a multi subunit protein. The alpha subunit enzymatically performs the transfer of malonate (substrate) to an acyl carrier protein subunit for subsequent decarboxylation, hence the name: acetyl-S-acyl carrier protein:malonate carrier protein-SH transferase.
Probab=32.43 E-value=4.4e+02 Score=31.11 Aligned_cols=134 Identities=12% Similarity=0.107 Sum_probs=80.2
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHhccCCCEEEeecCcHHHHHHHHHHH----HcC-CeeEEEEc-CCCCC-------
Q 006577 426 HSDIERFI-NEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAH----ELG-KQFRVVIV-DSRPK------- 491 (640)
Q Consensus 426 ~e~Id~fi-~E~i~~A~~~Ia~~a~~~I~dgdvILT~g~SstV~~vL~~A~----e~G-k~f~ViV~-ESRP~------- 491 (640)
++.+..|. +.+ ....+.|+......|++||+|-.=|+-.-.-.+|.++. .++ +.++++.. -++|.
T Consensus 12 ~~~~~~~~~~~~-~~~~~~~~~~l~~~i~~Gdrv~leg~~q~~a~~l~~~l~~~~~~~~~dLh~v~~~~~~~~~~~l~~~ 90 (543)
T TIGR01110 12 LNAANELFSDGK-VVPTQNGVELLEAVIAPGDRVVLEGNNQKQADFLSRCLASCDPEKINDLHMVQSSVPLPEHLDLFEK 90 (543)
T ss_pred HHHHHhhhcCCc-EeeHHHHHHHHHHhCCCCCEEEECCccccchHHHHhhHHhhCccccCCcEEEEecCCchhHHHHHhc
Confidence 34444444 222 22345677778889999999998888766555554422 223 45676665 34442
Q ss_pred ------------chHHHHHHHHHhCCCceEEEe--c--hHHHHHhh--hccEEEEcceeEecCCCeecccch-----HHH
Q 006577 492 ------------HEGKLLLRRLVRKGLSCTYTH--I--NAISYIIH--EVTRVFLGASSVLSNGTVCSRVGT-----ACV 548 (640)
Q Consensus 492 ------------~eG~~La~eL~~~GI~vTlI~--D--sAv~~iM~--~VdkVlvGADaIlaNG~VvNKiGT-----~~l 548 (640)
-|+.+|+ .+.+.| .+.|++ - +.+..++. .+|.+|+=+...-.+|.+. .|+ ..+
T Consensus 91 G~a~kl~fs~~g~~~~R~~-~av~~G-~id~iPih~~lse~pRlf~~L~pDVALI~aSpAD~~GN~s--lG~s~~~~~aa 166 (543)
T TIGR01110 91 GIARKLDFSFAGPQSLRIA-QLLEDG-KLEIGAIHTYLELYSRYFVDLTPNVSLIAAYEADRDGNLY--TGPNTEDTPAI 166 (543)
T ss_pred CceeeEEEeecCcchHHHH-HHHHcC-CeeEeehhchHhhhhhhhhccCCcEEEEECCcCCCCCeEE--ecCcccchHHH
Confidence 2444544 445555 344444 3 33444432 5899999999999999994 465 455
Q ss_pred HHHHhhCCCcEEEecc
Q 006577 549 AMVAYGFHIPVLVCCE 564 (640)
Q Consensus 549 AlaAk~~~VPVyV~ae 564 (640)
+.+|+..+--|+|-++
T Consensus 167 aeAAk~~agiVIVEVN 182 (543)
T TIGR01110 167 VEATAFRDGIVIAQVN 182 (543)
T ss_pred HHhhhhcCCEEEEEEC
Confidence 6666665555665433
No 261
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=32.42 E-value=1.4e+02 Score=26.64 Aligned_cols=57 Identities=19% Similarity=0.244 Sum_probs=35.7
Q ss_pred HHHHHHhCCCceEEEechHHH--HHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEe
Q 006577 497 LLRRLVRKGLSCTYTHINAIS--YIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (640)
Q Consensus 497 La~eL~~~GI~vTlI~DsAv~--~iM~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~ 562 (640)
+-+.|.++|+++.+..-+... -.+.++|.|+++-+.-+.=- .+--.+..+++||.++
T Consensus 19 i~~~~~~~~~~~~v~~~~~~~~~~~~~~~Diil~~Pqv~~~~~---------~i~~~~~~~~~pv~~I 77 (96)
T cd05564 19 MKKAAEKRGIDAEIEAVPESELEEYIDDADVVLLGPQVRYMLD---------EVKKKAAEYGIPVAVI 77 (96)
T ss_pred HHHHHHHCCCceEEEEecHHHHHHhcCCCCEEEEChhHHHHHH---------HHHHHhccCCCcEEEc
Confidence 345677788887776655443 36778999988865443111 1111245679999986
No 262
>PRK08912 hypothetical protein; Provisional
Probab=32.35 E-value=5.8e+02 Score=27.44 Aligned_cols=92 Identities=21% Similarity=0.261 Sum_probs=50.0
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEec---------hHHHHHhh-hccE
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI---------NAISYIIH-EVTR 525 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D---------sAv~~iM~-~Vdk 525 (640)
++|+|.|.+..+..++....+.|. +|++.+ |.+.+... .+...|+.+..+.. ..+-..+. ++..
T Consensus 89 ~i~~t~G~~~al~~~~~~~~~~gd--~Vlv~~--p~y~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 162 (387)
T PRK08912 89 EVMVTSGATEALAAALLALVEPGD--EVVLFQ--PLYDAYLP--LIRRAGGVPRLVRLEPPHWRLPRAALAAAFSPRTKA 162 (387)
T ss_pred cEEEeCCcHHHHHHHHHHhcCCCC--EEEEeC--CCchhhHH--HHHHcCCEEEEEecCcccCcCCHHHHHHHhCccceE
Confidence 788998888877666655444442 555543 66655433 33456776655542 11112221 3334
Q ss_pred EEEcceeEecCCCeecccchH-------HHHHHHhhCCCcEEE
Q 006577 526 VFLGASSVLSNGTVCSRVGTA-------CVAMVAYGFHIPVLV 561 (640)
Q Consensus 526 VlvGADaIlaNG~VvNKiGT~-------~lAlaAk~~~VPVyV 561 (640)
|++ + ..-|..|+. .++-+|+.|++.+++
T Consensus 163 v~l-------~-~p~NPtG~~~s~~~~~~i~~~~~~~~~~ii~ 197 (387)
T PRK08912 163 VLL-------N-NPLNPAGKVFPREELALLAEFCQRHDAVAIC 197 (387)
T ss_pred EEE-------e-CCCCCcCcccCHHHHHHHHHHHHHCCeEEEE
Confidence 433 2 234666653 256678888875554
No 263
>PRK07550 hypothetical protein; Provisional
Probab=32.32 E-value=4.4e+02 Score=28.35 Aligned_cols=102 Identities=17% Similarity=0.117 Sum_probs=51.6
Q ss_pred ccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEech---H----HHHH---hh
Q 006577 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN---A----ISYI---IH 521 (640)
Q Consensus 452 I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds---A----v~~i---M~ 521 (640)
+....+++|.|.+..+..++....+.|. +|+|. + |.+-+... .+...|+.+..+... . ...+ +.
T Consensus 88 ~~~~~i~~t~G~~~al~~~~~~l~~~gd--~Vlv~-~-p~y~~~~~--~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~~~ 161 (386)
T PRK07550 88 ISPEQVHITSGCNQAFWAAMVTLAGAGD--EVILP-L-PWYFNHKM--WLDMLGIRPVYLPCDEGPGLLPDPAAAEALIT 161 (386)
T ss_pred CCcceEEEecCcHHHHHHHHHHhcCCCC--EEEEc-C-CCCcchHH--HHHhcCCEEEEEecCCCcCCCCCHHHHHHHhc
Confidence 4455778888776665555544433343 44443 3 66655433 334678777665521 1 1222 22
Q ss_pred -hccEEEEc-ceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 522 -EVTRVFLG-ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 522 -~VdkVlvG-ADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
+...|++- .+ -..|.+++.-=--.|+-+|++|++++++
T Consensus 162 ~~~~~v~~~~P~--NPtG~~~~~~~~~~i~~~~~~~~~~iI~ 201 (386)
T PRK07550 162 PRTRAIALVTPN--NPTGVVYPPELLHELYDLARRHGIALIL 201 (386)
T ss_pred ccCcEEEEeCCC--CCCCcccCHHHHHHHHHHHHHcCeEEEE
Confidence 23333321 10 1224444333344577788999987764
No 264
>TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively.
Probab=32.30 E-value=8e+02 Score=27.94 Aligned_cols=147 Identities=11% Similarity=0.142 Sum_probs=74.4
Q ss_pred CccccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEeecCcHHHHHHHH
Q 006577 393 PLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQ 472 (640)
Q Consensus 393 Ptsvsm~NAIr~lk~~I~~l~~~~~~~eaK~~L~e~Id~fi~E~i~~A~~~Ia~~a~~~I~dgdvILT~g~SstV~~vL~ 472 (640)
|.-+++.+.-+||+...+-.....+ + .+++|+ ....+.|.+....++ .|..+..++-+..+..+..
T Consensus 264 ~~piGi~~T~~fl~~l~~~~g~~~~-----e-------~i~~er-~~~~~~~~d~~~~~l-~Gkrvai~~~~~~~~~l~~ 329 (461)
T TIGR02931 264 PTPIGIRNTDTFLQNLKKMTGKPIP-----E-------SLVKER-GIAIDAIADLTHMFL-ADKRVAIYGNPDLVIGLAE 329 (461)
T ss_pred CCCcchHHHHHHHHHHHHHHCCCCC-----H-------HHHHHH-HHHHHHHHhhhhHHh-CCCeEEEEeCHHHHHHHHH
Confidence 4456777776666655443221111 1 122222 123334444333333 5889999998887777766
Q ss_pred HHHHcCCeeEEEEcCCC-CCchHHHHHHHHHh-CCCceEEEechHHHHHhhhccEEEEcceeEecCCCeecccchHHHHH
Q 006577 473 HAHELGKQFRVVIVDSR-PKHEGKLLLRRLVR-KGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAM 550 (640)
Q Consensus 473 ~A~e~Gk~f~ViV~ESR-P~~eG~~La~eL~~-~GI~vTlI~DsAv~~iM~~VdkVlvGADaIlaNG~VvNKiGT~~lAl 550 (640)
-+.+.|....++++-+. +........++|.+ .+.++.++.+.-...+...+...-..+|-++.| ..-..
T Consensus 330 ~l~elGm~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~~~d~~~l~~~i~~~~~~~Dliig~---------s~~~~ 400 (461)
T TIGR02931 330 FCLDLEMKPVLLLLGDDNSGYVDDPRIKALQENVDYDMEIVTNADFWELESRIKNQGLELDLILGH---------SKGRF 400 (461)
T ss_pred HHHHCCCEEEEEEECCCCcccchhHHHHHHHhhCCCCceEEeCCCHHHHHHHHHhcCCCCCEEEEC---------cchHH
Confidence 66677887776655443 33333334455543 333444455433333332211100112223222 22246
Q ss_pred HHhhCCCcEEEe
Q 006577 551 VAYGFHIPVLVC 562 (640)
Q Consensus 551 aAk~~~VPVyV~ 562 (640)
+|+.++||++.+
T Consensus 401 ~a~k~gip~~~~ 412 (461)
T TIGR02931 401 ISIDYNIPMVRV 412 (461)
T ss_pred HHHHcCCCEEEe
Confidence 788999999976
No 265
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=32.27 E-value=4.2e+02 Score=25.61 Aligned_cols=107 Identities=15% Similarity=0.217 Sum_probs=60.2
Q ss_pred EEeec-CcHHHHHHHHHHHHcCCeeEEEEcCCC--CCchHHHHHHHHHhCCCceEEEe-c----hHHHHHhh-------h
Q 006577 458 LLTYG-SSSAVEMILQHAHELGKQFRVVIVDSR--PKHEGKLLLRRLVRKGLSCTYTH-I----NAISYIIH-------E 522 (640)
Q Consensus 458 ILT~g-~SstV~~vL~~A~e~Gk~f~ViV~ESR--P~~eG~~La~eL~~~GI~vTlI~-D----sAv~~iM~-------~ 522 (640)
+|..| ..+.-..+.+...+++ .-+|+++-.+ +..+..++..+|.+.|..+.|+. | ..+..++. .
T Consensus 3 ylitGG~gglg~~la~~La~~~-~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~~~~~~~~ 81 (181)
T PF08659_consen 3 YLITGGLGGLGQSLARWLAERG-ARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCDVTDPEAVAAALAQLRQRFGP 81 (181)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT--SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--TTSHHHHHHHHHTSHTTSS-
T ss_pred EEEECCccHHHHHHHHHHHHcC-CCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccCccCHHHHHHHHHHHHhccCC
Confidence 34444 4445455556666666 4466666555 45566778899999999999885 3 23333333 4
Q ss_pred ccEEEEcceeEecCCCeecc-------------cchHHHHHHHhhCCCcEEEecccc
Q 006577 523 VTRVFLGASSVLSNGTVCSR-------------VGTACVAMVAYGFHIPVLVCCEAY 566 (640)
Q Consensus 523 VdkVlvGADaIlaNG~VvNK-------------iGT~~lAlaAk~~~VPVyV~aety 566 (640)
++-||-+|-. +.++.+.++ .|+..+.-+...+.+.|+|++.+.
T Consensus 82 i~gVih~ag~-~~~~~~~~~t~~~~~~~~~~Kv~g~~~L~~~~~~~~l~~~i~~SSi 137 (181)
T PF08659_consen 82 IDGVIHAAGV-LADAPIQDQTPDEFDAVLAPKVRGLWNLHEALENRPLDFFILFSSI 137 (181)
T ss_dssp EEEEEE--------B-GCC--HHHHHHHHHHHHHHHHHHHHHHTTTTTSEEEEEEEH
T ss_pred cceeeeeeee-ecccccccCCHHHHHHHHhhhhhHHHHHHHHhhcCCCCeEEEECCh
Confidence 6777777754 557777663 355566556666788888876553
No 266
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=32.00 E-value=1.9e+02 Score=27.77 Aligned_cols=43 Identities=21% Similarity=0.262 Sum_probs=28.0
Q ss_pred CCCCchHHHHHHHHHhCCCceEEEech--HHHHHhhhccEEEEcc
Q 006577 488 SRPKHEGKLLLRRLVRKGLSCTYTHIN--AISYIIHEVTRVFLGA 530 (640)
Q Consensus 488 SRP~~eG~~La~eL~~~GI~vTlI~Ds--Av~~iM~~VdkVlvGA 530 (640)
.|=..-|+.|+..|.+.|..++.+.-. .+...++++|.|+...
T Consensus 35 Grs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~v~~ADIVvsAt 79 (140)
T cd05212 35 GRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKVHDADVVVVGS 79 (140)
T ss_pred CCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHHHhhCCEEEEec
Confidence 455556777777777777777766521 2455778889887653
No 267
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=31.78 E-value=5.4e+02 Score=26.07 Aligned_cols=111 Identities=11% Similarity=0.058 Sum_probs=62.5
Q ss_pred HHHHHHHHhccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCC------CCch-------H----HHHHHHHHhC-
Q 006577 443 VIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSR------PKHE-------G----KLLLRRLVRK- 504 (640)
Q Consensus 443 ~Ia~~a~~~I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESR------P~~e-------G----~~La~eL~~~- 504 (640)
.++..+.++|.+ ..|+..|..++=-.++......|.. +++++|-. -..| | ..+++.|.+.
T Consensus 17 ~~g~~~q~~L~~-~~V~ViG~GglGs~ia~~La~~Gvg-~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~ln 94 (212)
T PRK08644 17 RHTPKLLEKLKK-AKVGIAGAGGLGSNIAVALARSGVG-NLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEIN 94 (212)
T ss_pred hcCHHHHHHHhC-CCEEEECcCHHHHHHHHHHHHcCCC-eEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHC
Confidence 366667777764 5788888887655566666566764 33333322 1111 2 1233566654
Q ss_pred -CCceEEE----echHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhC-CCcEEEecc
Q 006577 505 -GLSCTYT----HINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGF-HIPVLVCCE 564 (640)
Q Consensus 505 -GI~vTlI----~DsAv~~iM~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~-~VPVyV~ae 564 (640)
.+.++.+ .+..+..+++++|.||-..|... -.+.+.-.|..+ ++|++.++.
T Consensus 95 p~v~v~~~~~~i~~~~~~~~~~~~DvVI~a~D~~~---------~r~~l~~~~~~~~~~p~I~~~~ 151 (212)
T PRK08644 95 PFVEIEAHNEKIDEDNIEELFKDCDIVVEAFDNAE---------TKAMLVETVLEHPGKKLVAASG 151 (212)
T ss_pred CCCEEEEEeeecCHHHHHHHHcCCCEEEECCCCHH---------HHHHHHHHHHHhCCCCEEEeeh
Confidence 4555443 33344456778998887765443 123333445555 999998643
No 268
>PRK03244 argD acetylornithine aminotransferase; Provisional
Probab=31.60 E-value=6e+02 Score=27.42 Aligned_cols=101 Identities=16% Similarity=0.210 Sum_probs=54.3
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHH-HHHHh----------CCCceEEEe--c-hHHHHHh-
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL-RRLVR----------KGLSCTYTH--I-NAISYII- 520 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La-~eL~~----------~GI~vTlI~--D-sAv~~iM- 520 (640)
.+++|.+-+..++.+++.+...|+. +|++.|. .+-|..+. ..+.. .+.++..+. | ..+-.++
T Consensus 105 ~v~~~~sgsea~~~al~~~~~~g~~-~ii~~~~--~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~ 181 (398)
T PRK03244 105 RVFFCNSGAEANEAAFKLARLTGRT-KIVAAEG--GFHGRTMGALALTGQPAKRAPFEPLPGGVEHVPYGDVDALAAAVD 181 (398)
T ss_pred EEEEeCchHHHHHHHHHHHHHHCCC-eEEEECC--CcCCccHHHHhccCCcccccCCCCCCCCceEeCCCCHHHHHHhhc
Confidence 5677777777888888877766653 5555553 33333222 11111 122344443 2 2333333
Q ss_pred hhccEEEEcceeEec-CCCeecccc-hHHHHHHHhhCCCcEEE
Q 006577 521 HEVTRVFLGASSVLS-NGTVCSRVG-TACVAMVAYGFHIPVLV 561 (640)
Q Consensus 521 ~~VdkVlvGADaIla-NG~VvNKiG-T~~lAlaAk~~~VPVyV 561 (640)
.++-.|++ +.+.. .|.++-.-+ -..+.-+|++|++.+++
T Consensus 182 ~~~~avii--ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~ 222 (398)
T PRK03244 182 DDTAAVFL--EPIQGEAGVVPPPAGYLAAAREITDRHGALLVL 222 (398)
T ss_pred CCeEEEEE--ecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEE
Confidence 24555555 33433 344444545 34566789999998876
No 269
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=31.58 E-value=4.2e+02 Score=29.35 Aligned_cols=98 Identities=18% Similarity=0.155 Sum_probs=49.4
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHH-HH-HHHHhCCCceEEEech---HHHHHhh-hccEEEEc
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKL-LL-RRLVRKGLSCTYTHIN---AISYIIH-EVTRVFLG 529 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~-La-~eL~~~GI~vTlI~Ds---Av~~iM~-~VdkVlvG 529 (640)
..|++-+-+..+..+|......|. +|++. .|.+.|.. +. ..+...|+++.++... .+...+. +...|++-
T Consensus 81 ~~i~~ssG~~Ai~~~l~all~~GD--~Vi~~--~~~y~~~~~~~~~~~~~~Gi~v~~vd~~d~e~l~~~i~~~tklV~ie 156 (398)
T PRK08249 81 AATAFSTGMAAISNTLYTFLKPGD--RVVSI--KDTYGGTNKIFTEFLPRMGVDVTLCETGDHEQIEAEIAKGCDLLYLE 156 (398)
T ss_pred eEEEeCChHHHHHHHHHHhcCCCC--EEEEc--CCchHHHHHHHHHHHhhCCeEEEEcCCCCHHHHHHhcCCCCeEEEEE
Confidence 344443333444444444444443 45544 35555543 33 3466779888875422 2333333 34455442
Q ss_pred ceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 530 ADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
. ---..|.+.. --.|+-+|+.++++++|
T Consensus 157 ~-p~NPtg~v~d---l~~I~~la~~~gi~liv 184 (398)
T PRK08249 157 T-PTNPTLKIVD---IERLAAAAKKVGALVVV 184 (398)
T ss_pred C-CCCCCCccCC---HHHHHHHHHHcCCEEEE
Confidence 1 1122343333 23577789999998876
No 270
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=31.56 E-value=7.4e+02 Score=28.30 Aligned_cols=141 Identities=12% Similarity=0.113 Sum_probs=68.4
Q ss_pred ccHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEeecCcHHHHHHHHHH
Q 006577 396 VSMGNAIRFLKSQIAKI-PISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHA 474 (640)
Q Consensus 396 vsm~NAIr~lk~~I~~l-~~~~~~~eaK~~L~e~Id~fi~E~i~~A~~~Ia~~a~~~I~dgdvILT~g~SstV~~vL~~A 474 (640)
+++.+.-+++.....-+ ....+. .+.+..+.+|++....+.+.|.++ ..++ .|..|..++.+..+..+.+-+
T Consensus 271 ~G~~~T~~~l~~la~~~~~~~~~~-----~~~~~~e~~i~~e~~~~~~~l~~~-~~~l-~Gk~vaI~~~~~~~~~la~~l 343 (475)
T PRK14478 271 YGIEDTSDSLRQIARLLVERGADA-----ELVERTEALIAEEEAKAWAALEPY-RPRL-EGKRVLLYTGGVKSWSVVKAL 343 (475)
T ss_pred CcHHHHHHHHHHHHHHHhhcCCCh-----HHHHHHHHHHHHHHHHHHHHHHHH-HHHh-CCCEEEEEcCCchHHHHHHHH
Confidence 56666666665443322 001111 122333344444323344444432 3344 467777777776666666666
Q ss_pred HHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHH---HHHhh--hccEEEEcceeEecCCCeecccchHHHH
Q 006577 475 HELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAI---SYIIH--EVTRVFLGASSVLSNGTVCSRVGTACVA 549 (640)
Q Consensus 475 ~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv---~~iM~--~VdkVlvGADaIlaNG~VvNKiGT~~lA 549 (640)
.+.|.....+++......+=..+.+.| .. .+.++.|... ..++. ++|++|-+ ..-.
T Consensus 344 ~ElGm~v~~~~~~~~~~~~~~~l~~~~-~~--~~~v~~d~~~~e~~~~i~~~~pDliig~----------------s~~~ 404 (475)
T PRK14478 344 QELGMEVVGTSVKKSTDEDKERIKELM-GP--DAHMIDDANPRELYKMLKEAKADIMLSG----------------GRSQ 404 (475)
T ss_pred HHCCCEEEEEEEECCCHHHHHHHHHHc-CC--CcEEEeCCCHHHHHHHHhhcCCCEEEec----------------Cchh
Confidence 677876665655544332212222333 22 3455555323 33333 35555443 1122
Q ss_pred HHHhhCCCcEEEe
Q 006577 550 MVAYGFHIPVLVC 562 (640)
Q Consensus 550 laAk~~~VPVyV~ 562 (640)
-+|+..+||++.+
T Consensus 405 ~~a~k~giP~~~~ 417 (475)
T PRK14478 405 FIALKAGMPWLDI 417 (475)
T ss_pred hhhhhcCCCEEEc
Confidence 5688899999843
No 271
>PRK14852 hypothetical protein; Provisional
Probab=31.55 E-value=5.4e+02 Score=32.57 Aligned_cols=130 Identities=11% Similarity=0.091 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcC------CCCCch------
Q 006577 426 HSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVD------SRPKHE------ 493 (640)
Q Consensus 426 ~e~Id~fi~E~i~~A~~~Ia~~a~~~I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~E------SRP~~e------ 493 (640)
.+.-+.|.+++...-...|+..+.++|. +.+|+..|.+++--.++......|.. ++.++| |.-..|
T Consensus 304 ~~~~~~~~~~ry~Rqi~lig~e~Q~kL~-~srVlVvGlGGlGs~ia~~LAraGVG-~I~L~D~D~Ve~SNLNRQ~l~~~~ 381 (989)
T PRK14852 304 LETRDAYTDIAFSRNLGLVDYAGQRRLL-RSRVAIAGLGGVGGIHLMTLARTGIG-NFNLADFDAYSPVNLNRQYGASIA 381 (989)
T ss_pred HHHHHHHHHHHhhchHhhcCHHHHHHHh-cCcEEEECCcHHHHHHHHHHHHcCCC-eEEEEcCCEecccccccccCCChh
Confidence 4555667666422222335555666665 57899999997766666666666764 333333 111111
Q ss_pred --HH----HHHHHHHhC--CCceEEEe----chHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 494 --GK----LLLRRLVRK--GLSCTYTH----INAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 494 --G~----~La~eL~~~--GI~vTlI~----DsAv~~iM~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
|+ .+++.|.+. .++++.+. ...+..++..+|.||-+.|.+.. .+--+... .|..++|||+.
T Consensus 382 dIG~~Kaevaa~~l~~INP~v~I~~~~~~I~~en~~~fl~~~DiVVDa~D~~~~------~~rr~l~~-~c~~~~IP~I~ 454 (989)
T PRK14852 382 SFGRGKLDVMTERALSVNPFLDIRSFPEGVAAETIDAFLKDVDLLVDGIDFFAL------DIRRRLFN-RALELGIPVIT 454 (989)
T ss_pred hCCChHHHHHHHHHHHHCCCCeEEEEecCCCHHHHHHHhhCCCEEEECCCCccH------HHHHHHHH-HHHHcCCCEEE
Confidence 21 233566654 46665553 34566678899999977775421 12223333 36889999997
Q ss_pred ecc
Q 006577 562 CCE 564 (640)
Q Consensus 562 ~ae 564 (640)
++.
T Consensus 455 ag~ 457 (989)
T PRK14852 455 AGP 457 (989)
T ss_pred eec
Confidence 543
No 272
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=31.53 E-value=2.2e+02 Score=30.97 Aligned_cols=103 Identities=16% Similarity=0.120 Sum_probs=73.5
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEcceeEec
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLS 535 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGADaIla 535 (640)
+.-+.|=....+...+.+|.+.|.+.-|++.|.=|...=.++.+++.+.| +.+|=-|..+.+.+...++=+=...|+.
T Consensus 67 ~~svI~Vp~~~aadai~EAida~i~liv~ITEgIP~~D~~~~~~~a~~~g--~~iiGPncpGiI~Pg~~kiGimp~~i~~ 144 (293)
T COG0074 67 NASVIFVPPPFAADAILEAIDAGIKLVVIITEGIPVLDMLELKRYAREKG--TRLIGPNCPGIITPGECKIGIMPGNIYK 144 (293)
T ss_pred CEEEEecCcHHHHHHHHHHHhCCCcEEEEEeCCCCHHHHHHHHHHHHhcC--CEEECCCCCccCcCCcceeeechhhhcc
Confidence 45555666777788888899999999999999999999888889999988 6777777778777765333222256666
Q ss_pred CCC--eecccchH--HHHHHHhhCCCcEE
Q 006577 536 NGT--VCSRVGTA--CVAMVAYGFHIPVL 560 (640)
Q Consensus 536 NG~--VvNKiGT~--~lAlaAk~~~VPVy 560 (640)
-|. +++|.||+ .++--=.+.+.=++
T Consensus 145 ~G~IGiVSrSGTLTyE~~~qlt~~G~GqS 173 (293)
T COG0074 145 PGNIGIVSRSGTLTYEAVSQLTEAGLGQS 173 (293)
T ss_pred CCceEEEecCcchHHHHHHHHHhcCCceE
Confidence 664 57888764 44443344444444
No 273
>COG2057 AtoA Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit [Lipid metabolism]
Probab=31.51 E-value=65 Score=33.70 Aligned_cols=121 Identities=23% Similarity=0.282 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHhccCCCEE-EeecCcHHHHHHHHHHHH---cCCeeEEEEcCCCCCchHHHHHHHHHhCC-CceEE----
Q 006577 440 ADRVIVKHAVTKIRDGDVL-LTYGSSSAVEMILQHAHE---LGKQFRVVIVDSRPKHEGKLLLRRLVRKG-LSCTY---- 510 (640)
Q Consensus 440 A~~~Ia~~a~~~I~dgdvI-LT~g~SstV~~vL~~A~e---~Gk~f~ViV~ESRP~~eG~~La~eL~~~G-I~vTl---- 510 (640)
.++.|+..++..|+||+.| |=+|--+.|-.++.+-.+ +-.+ -++-+..-|.. |. --..|...| -+|+.
T Consensus 7 ~~e~ia~r~A~el~dG~~VnlGIGlPtlvan~~~~~~~~~~~sen-g~Lg~g~~p~~-~~-~d~~linaG~~~vt~~pg~ 83 (225)
T COG2057 7 EREMIAKRAARELKDGDYVNLGIGLPTLVANYAPEGMNVLLQSEN-GLLGVGPAPLP-GE-EDADLINAGKQPVTALPGA 83 (225)
T ss_pred hHHHHHHHHHHhccCCCEEEecCCchHHhHhhcccccceEEecCc-eeEEecCCCCC-CC-CCcchhhCCCceeEecCCc
Confidence 4567888888899999754 456666666655542110 0011 12222333321 11 112344443 56666
Q ss_pred -EechHHHHHhh---hccEEEEcceeEecCCCeeccc----------chHHHHHHHhhCCCcEEEeccccc
Q 006577 511 -THINAISYIIH---EVTRVFLGASSVLSNGTVCSRV----------GTACVAMVAYGFHIPVLVCCEAYK 567 (640)
Q Consensus 511 -I~DsAv~~iM~---~VdkVlvGADaIlaNG~VvNKi----------GT~~lAlaAk~~~VPVyV~aetyK 567 (640)
+.|++.+..|- ++|.-||||--|-.+|++.|-+ |+--++.-||. |||.-+..|
T Consensus 84 ~~f~sa~sf~~irGGhidv~vLGa~QVd~~Gnlanw~Ipgk~vpGmGGAmdl~~gakk----vii~m~H~~ 150 (225)
T COG2057 84 SVFDSADSFAMIRGGHIDVAVLGAAQVDEYGNLANWMIPGKMVPGMGGAMDLVTGAKK----VIVVMEHTK 150 (225)
T ss_pred eEEchHHHHHHHhCCceEEEEecceeecccCceeeeeECCccccCCccchhhhcCCcE----EEEEeeeec
Confidence 66888877766 7999999999999999999964 44444433332 777766543
No 274
>PRK12452 cardiolipin synthetase; Reviewed
Probab=31.49 E-value=2.9e+02 Score=31.94 Aligned_cols=80 Identities=18% Similarity=0.212 Sum_probs=52.2
Q ss_pred EEEe--ecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchH-----HHHHHHHHhCCCceEEEechHHHHHhhhccEEEEc
Q 006577 457 VLLT--YGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEG-----KLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLG 529 (640)
Q Consensus 457 vILT--~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG-----~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvG 529 (640)
.|.| +.....+...|+.|..+|.+.++++.+ ++...+ +....+|.+.||++...... ++=
T Consensus 361 ~I~tpYf~pd~~l~~aL~~Aa~rGV~Vrii~p~-~~D~~~~~~a~~~~~~~L~~aGv~I~~y~~~------------~lH 427 (509)
T PRK12452 361 WIATPYFIPDQETLTLLRLSAISGIDVRILYPG-KSDSIISDQASQSYFTPLLKAGASIYSYKDG------------FMH 427 (509)
T ss_pred EEECCccCCCHHHHHHHHHHHHcCCEEEEEcCC-CCChHHHHHHHHHHHHHHHHcCCEEEEecCC------------Cee
Confidence 4666 244467788888888899888888764 444433 23347899999998765542 344
Q ss_pred ceeEecCCCeecccchHHHHH
Q 006577 530 ASSVLSNGTVCSRVGTACVAM 550 (640)
Q Consensus 530 ADaIlaNG~VvNKiGT~~lAl 550 (640)
+-.+.-||. +.-+||.++-.
T Consensus 428 aK~~ivD~~-~a~vGS~Nld~ 447 (509)
T PRK12452 428 AKIVLVDDK-IATIGTANMDV 447 (509)
T ss_pred eeEEEECCC-EEEEeCcccCH
Confidence 445555664 45677777654
No 275
>PRK07340 ornithine cyclodeaminase; Validated
Probab=31.37 E-value=3.4e+02 Score=28.99 Aligned_cols=95 Identities=16% Similarity=0.093 Sum_probs=56.2
Q ss_pred HHHhc--cCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhccE
Q 006577 448 AVTKI--RDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTR 525 (640)
Q Consensus 448 a~~~I--~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vdk 525 (640)
+.+++ .+..+|+.+|........+..+......-+|+|.. |-.-.-.+|+.++.+.|+++. .++ ...++.++|.
T Consensus 116 a~~~La~~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~-r~~~~a~~~a~~~~~~~~~~~--~~~-~~~av~~aDi 191 (304)
T PRK07340 116 AARTLAPAPPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRG-RTAASAAAFCAHARALGPTAE--PLD-GEAIPEAVDL 191 (304)
T ss_pred HHHHhCCCCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEc-CCHHHHHHHHHHHHhcCCeeE--ECC-HHHHhhcCCE
Confidence 34444 35678999998877666665554322223455553 433345567788877777665 332 3344578998
Q ss_pred EEEcc-------eeEecCCCeecccchH
Q 006577 526 VFLGA-------SSVLSNGTVCSRVGTA 546 (640)
Q Consensus 526 VlvGA-------DaIlaNG~VvNKiGT~ 546 (640)
|+... +..+.-|..+|-+|++
T Consensus 192 VitaT~s~~Pl~~~~~~~g~hi~~iGs~ 219 (304)
T PRK07340 192 VVTATTSRTPVYPEAARAGRLVVAVGAF 219 (304)
T ss_pred EEEccCCCCceeCccCCCCCEEEecCCC
Confidence 87632 1124677777777765
No 276
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=31.26 E-value=3.2e+02 Score=25.20 Aligned_cols=47 Identities=9% Similarity=0.216 Sum_probs=26.6
Q ss_pred EEEeecCcHHHHHHHHHHHHcC-CeeEEEEcCCCCCchHHHHHHHHHh
Q 006577 457 VLLTYGSSSAVEMILQHAHELG-KQFRVVIVDSRPKHEGKLLLRRLVR 503 (640)
Q Consensus 457 vILT~g~SstV~~vL~~A~e~G-k~f~ViV~ESRP~~eG~~La~eL~~ 503 (640)
+|.||.....+...|....++. ..|+|+|+|.....+-.+.++++..
T Consensus 3 vi~~~n~~~~l~~~l~sl~~q~~~~~evivvDd~s~d~~~~~~~~~~~ 50 (202)
T cd06433 3 ITPTYNQAETLEETIDSVLSQTYPNIEYIVIDGGSTDGTVDIIKKYED 50 (202)
T ss_pred EEeccchHHHHHHHHHHHHhCCCCCceEEEEeCCCCccHHHHHHHhHh
Confidence 3455655566666676665543 3477777765544444455544443
No 277
>PRK15029 arginine decarboxylase; Provisional
Probab=31.23 E-value=1.7e+02 Score=35.61 Aligned_cols=83 Identities=13% Similarity=0.149 Sum_probs=53.1
Q ss_pred EEEEcCCCCCc-------hHHHHHHHHHhCCCceEEEech--HHHHHhh--hccEEEEcceeEecCCCeecccchHHHHH
Q 006577 482 RVVIVDSRPKH-------EGKLLLRRLVRKGLSCTYTHIN--AISYIIH--EVTRVFLGASSVLSNGTVCSRVGTACVAM 550 (640)
Q Consensus 482 ~ViV~ESRP~~-------eG~~La~eL~~~GI~vTlI~Ds--Av~~iM~--~VdkVlvGADaIlaNG~VvNKiGT~~lAl 550 (640)
+|+++|..+.. ....|...|.+.|+.|....+. +...+-. ..|+||+ |..+.+++-+. .|...+--
T Consensus 2 kILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l~~~~~~DlVLL--D~~LPd~dG~~-~~~ell~~ 78 (755)
T PRK15029 2 KVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSNEAIDCLMF--SYQMEHPDEHQ-NVRQLIGK 78 (755)
T ss_pred eEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhcCCCcEEEE--ECCCCCCccch-hHHHHHHH
Confidence 57788877753 3455668999999999988754 3334333 4899999 56677776332 12222222
Q ss_pred HHh-hCCCcEEEeccccc
Q 006577 551 VAY-GFHIPVLVCCEAYK 567 (640)
Q Consensus 551 aAk-~~~VPVyV~aetyK 567 (640)
+-+ ..++|||+++..-.
T Consensus 79 IR~~~~~iPIIlLTar~~ 96 (755)
T PRK15029 79 LHERQQNVPVFLLGDREK 96 (755)
T ss_pred HHhhCCCCCEEEEEcCCc
Confidence 322 35899999987664
No 278
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=31.11 E-value=2.6e+02 Score=29.61 Aligned_cols=109 Identities=10% Similarity=0.049 Sum_probs=60.7
Q ss_pred CCCEEEeecCcHHHHH-HHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEE-ec----hHHHHHhhhccEEE
Q 006577 454 DGDVLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT-HI----NAISYIIHEVTRVF 527 (640)
Q Consensus 454 dgdvILT~g~SstV~~-vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI-~D----sAv~~iM~~VdkVl 527 (640)
.|.+||..|-++.+-. +.+.+.++|...+|++++.++.. ...+...+.. -.++++ .| ..+..++.++|.||
T Consensus 3 ~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~-~~~~~~~~~~--~~~~~v~~Dl~d~~~l~~~~~~iD~Vi 79 (324)
T TIGR03589 3 NNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELK-QWEMQQKFPA--PCLRFFIGDVRDKERLTRALRGVDYVV 79 (324)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhH-HHHHHHHhCC--CcEEEEEccCCCHHHHHHHHhcCCEEE
Confidence 3668888888876644 44445555534567776543321 1223333322 133332 12 34566777889888
Q ss_pred EcceeEec---CCC-----eecccchHHHHHHHhhCCCcEEEeccc
Q 006577 528 LGASSVLS---NGT-----VCSRVGTACVAMVAYGFHIPVLVCCEA 565 (640)
Q Consensus 528 vGADaIla---NG~-----VvNKiGT~~lAlaAk~~~VPVyV~aet 565 (640)
--|-.... +-+ -+|-.||..+.-+|+.+++.-+|...+
T Consensus 80 h~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~~iV~~SS 125 (324)
T TIGR03589 80 HAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVKRVVALST 125 (324)
T ss_pred ECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 76532100 000 145679999999999998865554433
No 279
>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=30.98 E-value=3.4e+02 Score=30.41 Aligned_cols=97 Identities=25% Similarity=0.331 Sum_probs=48.8
Q ss_pred EEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHH-HHH-HHHHhCCCceEEEe---chHHHHHhh-hccEEEEcc
Q 006577 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLL-RRLVRKGLSCTYTH---INAISYIIH-EVTRVFLGA 530 (640)
Q Consensus 457 vILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~-~La-~eL~~~GI~vTlI~---DsAv~~iM~-~VdkVlvGA 530 (640)
.+++-+-+..+..+|....+.|. +|++.+ +.+.|. .+. ..+...|+.+.++. ...+-..+. +...|++ .
T Consensus 76 ~l~~ssG~~Ai~~al~al~~~Gd--~Vl~~~--~~Y~~t~~~~~~~l~~~gi~v~~~d~~d~e~le~ai~~~tklV~l-e 150 (425)
T PRK06084 76 ALAVASGMAAITYAIQTIAEAGD--NIVSVA--KLYGGTYNLLAHTLPRIGIETRFAAHDDIAALEALIDERTKAVFC-E 150 (425)
T ss_pred eeEehhHHHHHHHHHHHHhCCCC--EEEEeC--CCcchHHHHHHHhcccceeEEEEECCCCHHHHHHHhccCCcEEEE-e
Confidence 44443223334444544444443 455543 344432 222 33444688887664 123333443 4555555 2
Q ss_pred eeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 531 SSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 531 DaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
.---..|.++. -..++-+|+.++++|+|
T Consensus 151 sp~NPtG~v~d---l~~I~~la~~~~i~vVv 178 (425)
T PRK06084 151 SIGNPAGNIID---IQALADAAHRHGVPLIV 178 (425)
T ss_pred CCCCCCCeecC---HHHHHHHHHHcCCEEEE
Confidence 22233455544 36677789999988876
No 280
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=30.74 E-value=2.3e+02 Score=31.69 Aligned_cols=68 Identities=15% Similarity=0.093 Sum_probs=41.7
Q ss_pred CCCEEEeecCcHHHHH-HHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEcc
Q 006577 454 DGDVLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA 530 (640)
Q Consensus 454 dgdvILT~g~SstV~~-vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGA 530 (640)
++..|+.+|-..+=.. +.+.+++.| .+|++.|.++.. ...+|.+.||.+.+ .. .. ..+..+|.||++.
T Consensus 6 ~~~~v~viG~G~sG~s~~a~~L~~~G--~~V~~~D~~~~~----~~~~l~~~gi~~~~-~~-~~-~~~~~~d~vv~sp 74 (461)
T PRK00421 6 RIKRIHFVGIGGIGMSGLAEVLLNLG--YKVSGSDLKESA----VTQRLLELGAIIFI-GH-DA-ENIKDADVVVYSS 74 (461)
T ss_pred CCCEEEEEEEchhhHHHHHHHHHhCC--CeEEEECCCCCh----HHHHHHHCCCEEeC-CC-CH-HHCCCCCEEEECC
Confidence 3456777776654444 234444444 679999988763 23458888987765 22 22 2345788887765
No 281
>CHL00041 rps11 ribosomal protein S11
Probab=30.70 E-value=97 Score=28.98 Aligned_cols=45 Identities=20% Similarity=0.197 Sum_probs=33.9
Q ss_pred HHHHHHHHHHcCCe-eEEEEcCCCCCchHHHHH-HHHHhCCCceEEEech
Q 006577 467 VEMILQHAHELGKQ-FRVVIVDSRPKHEGKLLL-RRLVRKGLSCTYTHIN 514 (640)
Q Consensus 467 V~~vL~~A~e~Gk~-f~ViV~ESRP~~eG~~La-~eL~~~GI~vTlI~Ds 514 (640)
++.+++.|.+.|.+ ++|++=- ...|++.+ +.|...|+.+..|.|-
T Consensus 62 a~~~~~~~~~~gi~~v~I~ikG---~G~Gr~~~ir~l~~~glkI~~I~D~ 108 (116)
T CHL00041 62 AENAIRTVIDQGMKRAEVMIKG---PGLGRDTALRAIRRSGLKLSSIRDV 108 (116)
T ss_pred HHHHHHHHHHcCCcEEEEEEEC---CCCcHHHHHHHHHHCCCEEEEEEEc
Confidence 57778888887744 5566532 34677776 9999999999999984
No 282
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=30.56 E-value=1.9e+02 Score=29.63 Aligned_cols=94 Identities=15% Similarity=0.050 Sum_probs=59.9
Q ss_pred CCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEcceeE
Q 006577 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSV 533 (640)
Q Consensus 454 dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGADaI 533 (640)
.|..||.+|.....+.=++...+.|-..+||..|.-|.+ ..-..+.+ ++.+-+.--......++.||+..|--
T Consensus 11 ~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el-----~~~~~~~~--i~~~~~~~~~~~~~~~~lviaAt~d~ 83 (210)
T COG1648 11 EGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPEL-----KALIEEGK--IKWIEREFDAEDLDDAFLVIAATDDE 83 (210)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHH-----HHHHHhcC--cchhhcccChhhhcCceEEEEeCCCH
Confidence 477899999999987777777778889999988873333 22222222 22222222222233477777665432
Q ss_pred ecCCCeecccchHHHHHHHhhCCCcEEEec
Q 006577 534 LSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (640)
Q Consensus 534 laNG~VvNKiGT~~lAlaAk~~~VPVyV~a 563 (640)
----.++-+|+.+++||.|+-
T Consensus 84 ---------~ln~~i~~~a~~~~i~vNv~D 104 (210)
T COG1648 84 ---------ELNERIAKAARERRILVNVVD 104 (210)
T ss_pred ---------HHHHHHHHHHHHhCCceeccC
Confidence 223468889999999999963
No 283
>PRK06348 aspartate aminotransferase; Provisional
Probab=30.56 E-value=3.8e+02 Score=28.88 Aligned_cols=103 Identities=17% Similarity=0.212 Sum_probs=51.6
Q ss_pred ccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEe---c-------hHHHHHhh
Q 006577 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH---I-------NAISYIIH 521 (640)
Q Consensus 452 I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~---D-------sAv~~iM~ 521 (640)
+...++++|.|.+..+..++....+.|. +|++. .|.+.+...+.+ ..|..+..+. + ..+-..+.
T Consensus 87 ~~~~~i~it~G~~~al~~~~~~~~~~gd--~vlv~--~p~y~~~~~~~~--~~g~~~~~~~~~~~~~~~~d~~~l~~~~~ 160 (384)
T PRK06348 87 FKRNEIMATVGACHGMYLALQSILDPGD--EVIIH--EPYFTPYKDQIE--MVGGKPIILETYEEDGFQINVKKLEALIT 160 (384)
T ss_pred CChhhEEEcCChHHHHHHHHHHhcCCCC--EEEEe--CCCCcchHHHHH--HcCCEEEEecCCcCcCCcCCHHHHHHhhC
Confidence 4455788888887776666665544443 55553 477766544332 3455555442 1 12222222
Q ss_pred -hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 522 -EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 522 -~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
++..|++- .-=-..|.++..-=-..++-+|++|++.+++
T Consensus 161 ~~~~~v~l~-~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~ 200 (384)
T PRK06348 161 SKTKAIILN-SPNNPTGAVFSKETLEEIAKIAIEYDLFIIS 200 (384)
T ss_pred cCccEEEEe-CCCCCCCcCCCHHHHHHHHHHHHHCCeEEEE
Confidence 34444432 1111123333222224466678888876654
No 284
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=30.49 E-value=3.3e+02 Score=27.68 Aligned_cols=108 Identities=13% Similarity=0.091 Sum_probs=66.8
Q ss_pred HHHHHHHhccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcC------CCCCc--------hH----HHHHHHHHhCC
Q 006577 444 IVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVD------SRPKH--------EG----KLLLRRLVRKG 505 (640)
Q Consensus 444 Ia~~a~~~I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~E------SRP~~--------eG----~~La~eL~~~G 505 (640)
++..+.++|. +.+|+..|..++--.++..+...|.. +++++| +.-.. -| ..+++.|.+..
T Consensus 11 ~g~~~q~~L~-~~~VlivG~GglGs~va~~La~~Gvg-~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n 88 (228)
T cd00757 11 IGEEGQEKLK-NARVLVVGAGGLGSPAAEYLAAAGVG-KLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAIN 88 (228)
T ss_pred cCHHHHHHHh-CCcEEEECCCHHHHHHHHHHHHcCCC-EEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhC
Confidence 4555566665 47899999988877777777777754 333332 11111 13 22336666654
Q ss_pred --CceEEEec----hHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEe
Q 006577 506 --LSCTYTHI----NAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (640)
Q Consensus 506 --I~vTlI~D----sAv~~iM~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~ 562 (640)
++++.+.. .....++.++|.||...|... .-..+.-.|+.+++|++.+
T Consensus 89 p~~~i~~~~~~i~~~~~~~~~~~~DvVi~~~d~~~---------~r~~l~~~~~~~~ip~i~~ 142 (228)
T cd00757 89 PDVEIEAYNERLDAENAEELIAGYDLVLDCTDNFA---------TRYLINDACVKLGKPLVSG 142 (228)
T ss_pred CCCEEEEecceeCHHHHHHHHhCCCEEEEcCCCHH---------HHHHHHHHHHHcCCCEEEE
Confidence 45544432 234456788999998877552 2356777889999999875
No 285
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=30.44 E-value=1.1e+02 Score=29.09 Aligned_cols=29 Identities=28% Similarity=0.288 Sum_probs=19.4
Q ss_pred HHhccCCCEEEeecCcHH---HHHHHHHHHHc
Q 006577 449 VTKIRDGDVLLTYGSSSA---VEMILQHAHEL 477 (640)
Q Consensus 449 ~~~I~dgdvILT~g~Sst---V~~vL~~A~e~ 477 (640)
...+.++|.++.+++|+. +..+++.|+++
T Consensus 74 ~~~~~~~D~~i~iS~sG~t~~~~~~~~~a~~~ 105 (154)
T TIGR00441 74 EALGQKGDVLLGISTSGNSKNVLKAIEAAKDK 105 (154)
T ss_pred HHhCCCCCEEEEEcCCCCCHHHHHHHHHHHHC
Confidence 345688999999988864 55555555543
No 286
>COG0424 Maf Nucleotide-binding protein implicated in inhibition of septum formation [Cell division and chromosome partitioning]
Probab=30.42 E-value=1.4e+02 Score=30.58 Aligned_cols=72 Identities=19% Similarity=0.274 Sum_probs=47.3
Q ss_pred HHHHHHHHHcCCeeEEEEcC--CCCC--chHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEcceeEec-CCCeecc
Q 006577 468 EMILQHAHELGKQFRVVIVD--SRPK--HEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLS-NGTVCSR 542 (640)
Q Consensus 468 ~~vL~~A~e~Gk~f~ViV~E--SRP~--~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGADaIla-NG~VvNK 542 (640)
..+|..+ |..|.|++.+ ..+. ..-..++.+|+..+- .+++...+ -|.+|||||.|+. ||-++.|
T Consensus 15 ~elL~~~---gi~f~~~~~~iDE~~~~~~~P~~~v~~LA~~KA-------~~va~~~~-~~~~VigaDtvv~ldgrilgK 83 (193)
T COG0424 15 RELLEQL---GIPFEVIPSDIDEPLLKAEEPREYVLRLAEEKA-------RAVAARLP-PDALVIGADTVVVLDGRILGK 83 (193)
T ss_pred HHHHHHC---CCCeEEecCCCCCCcccCCCHHHHHHHHHHHHH-------HHHHHhCC-CCCEEEecCeEEEECCEEecC
Confidence 3455544 8899999774 3332 224667777776431 12222222 5899999998876 9999999
Q ss_pred cchHHHHH
Q 006577 543 VGTACVAM 550 (640)
Q Consensus 543 iGT~~lAl 550 (640)
-.+..-|.
T Consensus 84 P~~~~eA~ 91 (193)
T COG0424 84 PKDEEEAR 91 (193)
T ss_pred CCCHHHHH
Confidence 99987764
No 287
>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase
Probab=30.41 E-value=7.1e+02 Score=27.25 Aligned_cols=101 Identities=12% Similarity=0.174 Sum_probs=48.8
Q ss_pred CCEEEeecCcHHHHHHHHHH-H-HcCCeeEEEEcCCCCCchHHHHH-HHH-HhCCCceEEEech--------HHHHHhh-
Q 006577 455 GDVLLTYGSSSAVEMILQHA-H-ELGKQFRVVIVDSRPKHEGKLLL-RRL-VRKGLSCTYTHIN--------AISYIIH- 521 (640)
Q Consensus 455 gdvILT~g~SstV~~vL~~A-~-e~Gk~f~ViV~ESRP~~eG~~La-~eL-~~~GI~vTlI~Ds--------Av~~iM~- 521 (640)
.++|+|.|.+..+..+++.. . ..+..-+|++.+ +.+.+.... ..+ ...|+.+.++... .+...+.
T Consensus 95 ~~v~~t~g~t~al~~i~~~~~~~~~~~gd~vl~~~--~~~~s~~~~~~~~a~~~g~~v~~v~~~~~~~~~~~~l~~~i~~ 172 (424)
T PLN02855 95 REIVFTRNATEAINLVAYTWGLANLKPGDEVILSV--AEHHSNIVPWQLVAQKTGAVLKFVGLTPDEVLDVEQLKELLSE 172 (424)
T ss_pred CEEEEeCCHHHHHHHHHHHhhhhcCCCcCEEEECC--CccHHHHHHHHHHHHHcCCEEEEEecCCCCCcCHHHHHHHhcc
Confidence 46777766665555555431 0 112223566554 333322222 233 3568887777521 1222222
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 522 ~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
+..+|++. +.-...|.+.. -..|+-+|+.+++.|+|
T Consensus 173 ~t~lv~i~-~~~n~tG~~~~---~~~I~~l~~~~g~~viv 208 (424)
T PLN02855 173 KTKLVATH-HVSNVLGSILP---VEDIVHWAHAVGAKVLV 208 (424)
T ss_pred CceEEEEe-CccccccccCC---HHHHHHHHHHcCCEEEE
Confidence 34444333 22233454443 23567788889887775
No 288
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=30.39 E-value=3.8e+02 Score=28.98 Aligned_cols=94 Identities=15% Similarity=0.077 Sum_probs=53.1
Q ss_pred CEEEeecCcHHHHHHHHHHHHc-CCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEech----------HH-HHHhhhc
Q 006577 456 DVLLTYGSSSAVEMILQHAHEL-GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN----------AI-SYIIHEV 523 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~-Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds----------Av-~~iM~~V 523 (640)
.+++|.|.+..+..++....+. |..-.|+|. .|.+.+...+ +...|+++..|... ++ ..+.+++
T Consensus 92 ~i~it~G~~~al~~~~~~l~~~~~~gd~vlv~--~P~y~~~~~~--~~~~g~~~~~vp~~~~~~~~~d~~~l~~~~~~~~ 167 (396)
T PRK09147 92 QVLPVNGSREALFAFAQTVIDRDGPGPLVVCP--NPFYQIYEGA--ALLAGAEPYFLNCDPANNFAPDFDAVPAEVWART 167 (396)
T ss_pred eEEECCChHHHHHHHHHHHcCCCCCCCEEEEc--CCCccchHHH--HHhcCCEEEEeccCccccCccCHHHHHHHHhhcc
Confidence 5778888888776666655544 223445554 7777765544 33457777666421 11 1112244
Q ss_pred cEEEEcceeEecCCCeecccc-------hHHHHHHHhhCCCcEEE
Q 006577 524 TRVFLGASSVLSNGTVCSRVG-------TACVAMVAYGFHIPVLV 561 (640)
Q Consensus 524 dkVlvGADaIlaNG~VvNKiG-------T~~lAlaAk~~~VPVyV 561 (640)
..+++ + +--|..| -..++-+|+.|++.+++
T Consensus 168 k~i~l-------~-nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~ 204 (396)
T PRK09147 168 QLLFV-------C-SPGNPTGAVLPLDDWKKLFALSDRYGFVIAS 204 (396)
T ss_pred EEEEE-------c-CCCCCcCccCCHHHHHHHHHHHHHcCeEEEe
Confidence 44443 2 2346666 44566678888887664
No 289
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative. This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.
Probab=30.27 E-value=4.5e+02 Score=27.97 Aligned_cols=16 Identities=13% Similarity=0.075 Sum_probs=12.5
Q ss_pred HHHHHHHhhCCCcEEE
Q 006577 546 ACVAMVAYGFHIPVLV 561 (640)
Q Consensus 546 ~~lAlaAk~~~VPVyV 561 (640)
..++-+|+.|++.+++
T Consensus 183 ~~i~~l~~~~~~~li~ 198 (385)
T TIGR01825 183 PEIVELAERYGAVTYV 198 (385)
T ss_pred HHHHHHHHHhCCEEEE
Confidence 4567788999987776
No 290
>PRK05939 hypothetical protein; Provisional
Probab=30.27 E-value=4.8e+02 Score=28.93 Aligned_cols=94 Identities=14% Similarity=0.139 Sum_probs=50.5
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHH-HHHHHHHhCCCceEEEech---HHHHHhh-hccEEEEcc
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLLRRLVRKGLSCTYTHIN---AISYIIH-EVTRVFLGA 530 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~-~La~eL~~~GI~vTlI~Ds---Av~~iM~-~VdkVlvGA 530 (640)
..|++-+-...+..+|......|. +|++.+ +.+-+. .+...|...|+.++++... .+-..+. +...|++
T Consensus 64 ~~v~~ssG~~Ai~~~l~all~~Gd--~Vv~~~--~~y~~t~~~~~~l~~~G~~v~~v~~~d~e~l~~~l~~~tklV~v-- 137 (397)
T PRK05939 64 GTVCFATGMAAIAAVFLTLLRAGD--HLVSSQ--FLFGNTNSLFGTLRGLGVEVTMVDATDVQNVAAAIRPNTRMVFV-- 137 (397)
T ss_pred eEEEeCCHHHHHHHHHHHHcCCCC--EEEECC--CccccHHHHHHHHHhcCCEEEEECCCCHHHHHHhCCCCCeEEEE--
Confidence 345544434445555555544443 566644 444333 3345577789988887532 3333333 3334433
Q ss_pred eeEecCCCeecccch----HHHHHHHhhCCCcEEE
Q 006577 531 SSVLSNGTVCSRVGT----ACVAMVAYGFHIPVLV 561 (640)
Q Consensus 531 DaIlaNG~VvNKiGT----~~lAlaAk~~~VPVyV 561 (640)
+ .+.|..|. ..|+-+|+.++++++|
T Consensus 138 -----e-sp~NptG~v~dl~~I~~la~~~gi~liv 166 (397)
T PRK05939 138 -----E-TIANPGTQVADLAGIGALCRERGLLYVV 166 (397)
T ss_pred -----E-CCCCCCCCHHhHHHHHHHHHHcCCEEEE
Confidence 1 23444443 3466788999988776
No 291
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=30.16 E-value=5.2e+02 Score=28.34 Aligned_cols=107 Identities=19% Similarity=0.230 Sum_probs=55.4
Q ss_pred HHHHHHHHHHh----ccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEec---
Q 006577 441 DRVIVKHAVTK----IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--- 513 (640)
Q Consensus 441 ~~~Ia~~a~~~----I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D--- 513 (640)
.+.|+++.... +....+|+|.|.+..+..++....+.|. .|++.+ |.+.+.... +...|+.+..+..
T Consensus 80 r~aia~~~~~~~g~~~~~~~I~it~G~~~al~~~~~~l~~~gd--~v~v~~--P~y~~~~~~--~~~~g~~~~~~~~~~~ 153 (409)
T PLN00143 80 RRAIADYLSNDLPYQLSPDDVYLTLGCKHAAEIIIKVLARPEA--NILLPR--PGFPDVETY--AIFHHLEIRHFDLLPE 153 (409)
T ss_pred HHHHHHHHHhhcCCCCCHhhEEEecChHHHHHHHHHHHcCCCC--EEEEcC--CCCcCHHHH--HHHcCCEEEEEeccCC
Confidence 44555554332 4445788888877776666665544443 444433 665544322 2335666655531
Q ss_pred -------hHHHHHhh-hccEEEEcceeEecCCCeecccchH-------HHHHHHhhCCCcEEE
Q 006577 514 -------NAISYIIH-EVTRVFLGASSVLSNGTVCSRVGTA-------CVAMVAYGFHIPVLV 561 (640)
Q Consensus 514 -------sAv~~iM~-~VdkVlvGADaIlaNG~VvNKiGT~-------~lAlaAk~~~VPVyV 561 (640)
.++-.++. +..++++ .|= -|.+|+. .++-+|+.|++.+++
T Consensus 154 ~~~~~d~~~l~~~~~~~~~~~~~------~nP--~NPTG~~~s~~~~~~l~~~a~~~~~~ii~ 208 (409)
T PLN00143 154 KGWEVDLDAVEAIADENTIAMVI------INP--GNPCGSVYSYEHLNKIAETARKLGILVIA 208 (409)
T ss_pred CCCcCCHHHHHHhcccCCEEEEE------ECC--CCCCCCccCHHHHHHHHHHHHHcCCeEEE
Confidence 12222222 2333332 222 2677764 455678889987764
No 292
>PRK08960 hypothetical protein; Provisional
Probab=30.14 E-value=3.7e+02 Score=28.95 Aligned_cols=96 Identities=11% Similarity=0.074 Sum_probs=49.4
Q ss_pred ccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEe-chH------HHHHhh---
Q 006577 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-INA------ISYIIH--- 521 (640)
Q Consensus 452 I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~-DsA------v~~iM~--- 521 (640)
+..+++++|.|.+..+..++....+.| -+|+|. .|.+.+...... ..|..+..+. |.. +..+.+
T Consensus 90 ~~~~~i~it~G~~~al~~~~~~~~~~g--d~vlv~--~p~y~~~~~~~~--~~g~~~~~v~~~~~~~~~~d~~~l~~~~~ 163 (387)
T PRK08960 90 VDPERILVTPGGSGALLLASSLLVDPG--KHWLLA--DPGYPCNRHFLR--LVEGAAQLVPVGPDSRYQLTPALVERHWN 163 (387)
T ss_pred CChhhEEEccCcHHHHHHHHHHhcCCC--CEEEEc--CCCCcchHHHHH--hcCCeEEEEecCcccCCCCCHHHHHHHhC
Confidence 445678888888877666665444333 345543 466655443333 2355554443 211 222222
Q ss_pred -hccEEEEcceeEecCCCeecccchH-------HHHHHHhhCCCcEEE
Q 006577 522 -EVTRVFLGASSVLSNGTVCSRVGTA-------CVAMVAYGFHIPVLV 561 (640)
Q Consensus 522 -~VdkVlvGADaIlaNG~VvNKiGT~-------~lAlaAk~~~VPVyV 561 (640)
+..+|++ .| .-|..|+. .++-+|++|++.+++
T Consensus 164 ~~~~~i~i------~~--p~NPtG~~~~~~~~~~l~~~~~~~~~~li~ 203 (387)
T PRK08960 164 ADTVGALV------AS--PANPTGTLLSRDELAALSQALRARGGHLVV 203 (387)
T ss_pred ccceEEEE------EC--CCCCCCcCcCHHHHHHHHHHHHHcCCEEEE
Confidence 2223322 22 23666664 466678889887654
No 293
>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]
Probab=30.13 E-value=9e+02 Score=27.83 Aligned_cols=109 Identities=15% Similarity=0.183 Sum_probs=67.4
Q ss_pred Hhcc--CCCEEEeecCcHHHHHHHHHHHH-c--CCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhh---
Q 006577 450 TKIR--DGDVLLTYGSSSAVEMILQHAHE-L--GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIH--- 521 (640)
Q Consensus 450 ~~I~--dgdvILT~g~SstV~~vL~~A~e-~--Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~--- 521 (640)
++|. +.|+|+|-+-+....-+|+.-.. . +.+-+|+.+.+.-...+. -.+.|.+.|+.|||++-.--+.+.-
T Consensus 96 klInAd~~dIiFts~ATEs~Nlvl~~v~~~~~~~~~k~iitl~~eH~~v~~-s~~~l~~~g~~Vt~lpv~~~~~~d~~~~ 174 (428)
T KOG1549|consen 96 KLINADPSDIVFTSGATESNNLVLKGVARFFGDKTKKHIITLQTEHPCVLD-SCRALQEEGLEVTYLPVEDSGLVDISKL 174 (428)
T ss_pred HHhCCCCCcEEEeCCchHHHHHHHHHhhccccccccceEEEecccCcchhH-HHHHHHhcCeEEEEeccCccccccHHHH
Confidence 3664 34688887777776666665432 1 222366666655443321 2478899999999998663332221
Q ss_pred ----hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 522 ----EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 522 ----~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
+-+-.+++.+.|..-=++++.+ --|..+|+..+|.|++
T Consensus 175 ~~~i~~~T~lv~I~~Vnn~~gv~~Pv--~EI~~icr~~~v~v~~ 216 (428)
T KOG1549|consen 175 REAIRSKTRLVSIMHVNNEIGVLQPV--KEIVKICREEGVQVHV 216 (428)
T ss_pred HHhcCCCceEEEEEecccCccccccH--HHHHHHhCcCCcEEEe
Confidence 3467777777776543444433 3477899999996665
No 294
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=30.12 E-value=5.6e+02 Score=28.03 Aligned_cols=110 Identities=15% Similarity=0.127 Sum_probs=66.3
Q ss_pred HHHHHHHHhccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCC----------Cc------hH----HHHHHHHH
Q 006577 443 VIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRP----------KH------EG----KLLLRRLV 502 (640)
Q Consensus 443 ~Ia~~a~~~I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP----------~~------eG----~~La~eL~ 502 (640)
.|+..+.++|.+ .+||..|..+.=-.++..+...|.. ++.++|..- ++ .| ..+.+.|.
T Consensus 13 ~~G~~~Q~~L~~-~~VlVvG~GglGs~va~~La~aGvg-~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~ 90 (339)
T PRK07688 13 PIGEEGQQKLRE-KHVLIIGAGALGTANAEMLVRAGVG-KVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLE 90 (339)
T ss_pred hcCHHHHHHhcC-CcEEEECCCHHHHHHHHHHHHcCCC-eEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHH
Confidence 366667777754 6788888887655555555556764 455554321 00 02 11225555
Q ss_pred hC--CCceEEEe----chHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEec
Q 006577 503 RK--GLSCTYTH----INAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (640)
Q Consensus 503 ~~--GI~vTlI~----DsAv~~iM~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~a 563 (640)
+. .|.++.+. ...+..+++++|.||.+.|.. ---+.+.-+|..+++|++.++
T Consensus 91 ~inp~v~v~~~~~~~~~~~~~~~~~~~DlVid~~Dn~---------~~r~~ln~~~~~~~iP~i~~~ 148 (339)
T PRK07688 91 EINSDVRVEAIVQDVTAEELEELVTGVDLIIDATDNF---------ETRFIVNDAAQKYGIPWIYGA 148 (339)
T ss_pred HHCCCcEEEEEeccCCHHHHHHHHcCCCEEEEcCCCH---------HHHHHHHHHHHHhCCCEEEEe
Confidence 44 35554443 234456688899999987743 234567778999999998643
No 295
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=30.03 E-value=1.7e+02 Score=28.34 Aligned_cols=56 Identities=9% Similarity=0.189 Sum_probs=32.8
Q ss_pred EEEeecCcHHHHHHHHHHHHcC---CeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEe
Q 006577 457 VLLTYGSSSAVEMILQHAHELG---KQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH 512 (640)
Q Consensus 457 vILT~g~SstV~~vL~~A~e~G---k~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~ 512 (640)
+|-||.....+..+|....++. ..++|+|+|.....+=..+++.+.+....+.++.
T Consensus 5 iip~~n~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~~~~~~~~~v~~i~ 63 (249)
T cd02525 5 IIPVRNEEKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQEYAAKDPRIRLID 63 (249)
T ss_pred EEEcCCchhhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHHHHHhcCCeEEEEe
Confidence 3455555566666676666544 3567777776665555555556655444455554
No 296
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=29.91 E-value=5.5e+02 Score=25.66 Aligned_cols=108 Identities=22% Similarity=0.227 Sum_probs=63.5
Q ss_pred HHHHHHHhccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCC----------------chHH----HHHHHHHh
Q 006577 444 IVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPK----------------HEGK----LLLRRLVR 503 (640)
Q Consensus 444 Ia~~a~~~I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~----------------~eG~----~La~eL~~ 503 (640)
++..+.++|.+ ..|+..|.++.-..+++.....|.. +++++|..-. .-|+ .++..|.+
T Consensus 9 ~G~~~q~~L~~-s~VlviG~gglGsevak~L~~~GVg-~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~ 86 (198)
T cd01485 9 WGDEAQNKLRS-AKVLIIGAGALGAEIAKNLVLAGID-SITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQE 86 (198)
T ss_pred cCHHHHHHHhh-CcEEEECCCHHHHHHHHHHHHcCCC-EEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHH
Confidence 44555666654 6788889998766777777777765 3333332110 0121 22355666
Q ss_pred CC--CceEEEec------hHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEe
Q 006577 504 KG--LSCTYTHI------NAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (640)
Q Consensus 504 ~G--I~vTlI~D------sAv~~iM~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~ 562 (640)
.+ +.++.+.. .-...+.+++|.||...|. ..--..+.-.|+.+++||+.+
T Consensus 87 lNp~v~i~~~~~~~~~~~~~~~~~~~~~dvVi~~~d~---------~~~~~~ln~~c~~~~ip~i~~ 144 (198)
T cd01485 87 LNPNVKLSIVEEDSLSNDSNIEEYLQKFTLVIATEEN---------YERTAKVNDVCRKHHIPFISC 144 (198)
T ss_pred HCCCCEEEEEecccccchhhHHHHHhCCCEEEECCCC---------HHHHHHHHHHHHHcCCCEEEE
Confidence 54 45544432 2344567788888765442 222344566899999999985
No 297
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=29.80 E-value=4.5e+02 Score=28.49 Aligned_cols=96 Identities=20% Similarity=0.331 Sum_probs=49.5
Q ss_pred ccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEec----------hHHHHHhh
Q 006577 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI----------NAISYIIH 521 (640)
Q Consensus 452 I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D----------sAv~~iM~ 521 (640)
+....+++|.|.+..+..++....+.|. +|++. .|.+.... ..+...|+.+..+.. ..+-..+.
T Consensus 93 ~~~~~i~~t~G~~~al~~~~~~l~~~gd--~v~i~--~P~y~~~~--~~~~~~g~~v~~~~~~~~~~~~~d~~~l~~~~~ 166 (401)
T TIGR01264 93 IEADDVVLCSGCSHAIEMCIAALANAGQ--NILVP--RPGFPLYE--TLAESMGIEVKLYNLLPDKSWEIDLKQLESLID 166 (401)
T ss_pred CCHHHEEECcChHHHHHHHHHHhCCCCC--EEEEe--CCCChhHH--HHHHHcCCEEEEeecCCccCCCCCHHHHHHHhc
Confidence 3344567777777766555554443333 45554 36554332 334556777666531 11222222
Q ss_pred -hccEEEEcceeEecCCCeecccchH-------HHHHHHhhCCCcEEE
Q 006577 522 -EVTRVFLGASSVLSNGTVCSRVGTA-------CVAMVAYGFHIPVLV 561 (640)
Q Consensus 522 -~VdkVlvGADaIlaNG~VvNKiGT~-------~lAlaAk~~~VPVyV 561 (640)
+..+|++. | .-|..|+. .++-+|+++++.+++
T Consensus 167 ~~~~~v~~~------~--p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~ 206 (401)
T TIGR01264 167 EKTAALIVN------N--PSNPCGSVFSRQHLEEILAVAERQCLPIIA 206 (401)
T ss_pred cCceEEEEc------C--CCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 34444331 1 23566654 456677888887765
No 298
>PRK15005 universal stress protein F; Provisional
Probab=29.69 E-value=1.4e+02 Score=27.05 Aligned_cols=36 Identities=17% Similarity=0.255 Sum_probs=22.2
Q ss_pred hccEEEEcceeEecCCCeec-ccchHHHHHHHhhCCCcEEEe
Q 006577 522 EVTRVFLGASSVLSNGTVCS-RVGTACVAMVAYGFHIPVLVC 562 (640)
Q Consensus 522 ~VdkVlvGADaIlaNG~VvN-KiGT~~lAlaAk~~~VPVyV~ 562 (640)
++|+|++|++. +| +.. -+|+-. .-+.++..+||+|+
T Consensus 107 ~~DLIV~Gs~~---~~-~~~~llGS~a-~~vl~~a~cpVlvV 143 (144)
T PRK15005 107 PADMIIIASHR---PD-ITTYLLGSNA-AAVVRHAECSVLVV 143 (144)
T ss_pred CCCEEEEeCCC---CC-chheeecchH-HHHHHhCCCCEEEe
Confidence 68888888763 23 222 236533 33567778888885
No 299
>PRK08064 cystathionine beta-lyase; Provisional
Probab=29.24 E-value=7.3e+02 Score=27.27 Aligned_cols=97 Identities=14% Similarity=0.155 Sum_probs=48.8
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHH-HHH-HHHHhCCCceEEEech---HHHHHhh-hccEEEEc
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLL-RRLVRKGLSCTYTHIN---AISYIIH-EVTRVFLG 529 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~-~La-~eL~~~GI~vTlI~Ds---Av~~iM~-~VdkVlvG 529 (640)
..|++-+-+..+..+|. +.+.|. +|++. .|.+.|. .+. ..+...|+.+.++... .+-..+. +...|++
T Consensus 71 ~~v~~~sG~~ai~~~l~-~l~~Gd--~Vlv~--~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~~l~~~tklV~l- 144 (390)
T PRK08064 71 KGFAFASGMAAISTAFL-LLSKGD--HVLIS--EDVYGGTYRMITEVLSRFGIEHTFVDMTNLEEVAQNIKPNTKLFYV- 144 (390)
T ss_pred CeEEECCHHHHHHHHHH-HhCCCC--EEEEc--cCccchHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCCCceEEEE-
Confidence 34554222333444443 444444 46664 4555543 233 4566789999887643 2323332 3444443
Q ss_pred ceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 530 ADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
..---..|.+.. --.|+-+|+.+++.|+|
T Consensus 145 ~~p~NptG~~~d---l~~I~~la~~~g~~vvv 173 (390)
T PRK08064 145 ETPSNPLLKVTD---IRGVVKLAKAIGCLTFV 173 (390)
T ss_pred ECCCCCCcEecc---HHHHHHHHHHcCCEEEE
Confidence 211112343321 23566788999987776
No 300
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=29.14 E-value=3.3e+02 Score=30.29 Aligned_cols=75 Identities=11% Similarity=0.196 Sum_probs=43.9
Q ss_pred cCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHh--CCCceEEEechHHHHHhhhccEEEEcc
Q 006577 453 RDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVR--KGLSCTYTHINAISYIIHEVTRVFLGA 530 (640)
Q Consensus 453 ~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~--~GI~vTlI~DsAv~~iM~~VdkVlvGA 530 (640)
+...+|+.+|..++=..+.+.+++.| ++|++.|.++.. .+..+|.+ .||.+.+-... . ..+.++|.||+..
T Consensus 4 ~~~~~~~v~G~G~sG~s~a~~L~~~G--~~v~~~D~~~~~---~~~~~l~~~~~g~~~~~~~~~-~-~~~~~~d~vV~sp 76 (448)
T PRK03803 4 QSDGLHIVVGLGKTGLSVVRFLARQG--IPFAVMDSREQP---PGLDTLAREFPDVELRCGGFD-C-ELLVQASEIIISP 76 (448)
T ss_pred ccCCeEEEEeecHhHHHHHHHHHhCC--CeEEEEeCCCCc---hhHHHHHhhcCCcEEEeCCCC-h-HHhcCCCEEEECC
Confidence 44456777776654334445555555 689999987643 23345766 37766653211 1 2346789888876
Q ss_pred eeEec
Q 006577 531 SSVLS 535 (640)
Q Consensus 531 DaIla 535 (640)
+|-.
T Consensus 77 -~i~~ 80 (448)
T PRK03803 77 -GLAL 80 (448)
T ss_pred -CCCC
Confidence 5543
No 301
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=29.01 E-value=4.2e+02 Score=29.53 Aligned_cols=103 Identities=23% Similarity=0.233 Sum_probs=55.5
Q ss_pred ccCCCEEEeecCcH-HHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHH-HHHHhCCCceEEEech---HHHHHhh-hccE
Q 006577 452 IRDGDVLLTYGSSS-AVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL-RRLVRKGLSCTYTHIN---AISYIIH-EVTR 525 (640)
Q Consensus 452 I~dgdvILT~g~Ss-tV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La-~eL~~~GI~vTlI~Ds---Av~~iM~-~Vdk 525 (640)
|..|+-.+.++..- .+-..|....+.|. +|++. ..-|..-.++. +.|...||.++++... .+...+. ++..
T Consensus 67 Le~g~~a~~~~SGmaAi~~~l~~ll~~Gd--~iv~~-~~~Y~~t~~~~~~~l~~~gv~v~~~d~~d~~~l~~~l~~~t~~ 143 (386)
T PF01053_consen 67 LEGGEDALLFSSGMAAISAALLALLKPGD--HIVAS-DDLYGGTYRLLEELLPRFGVEVTFVDPTDLEALEAALRPNTKL 143 (386)
T ss_dssp HHT-SEEEEESSHHHHHHHHHHHHS-TTB--EEEEE-SSSSHHHHHHHHHCHHHTTSEEEEESTTSHHHHHHHHCTTEEE
T ss_pred hhcccceeeccchHHHHHHHHHhhcccCC--ceEec-CCccCcchhhhhhhhcccCcEEEEeCchhHHHHHhhccccceE
Confidence 34555555555433 33345555555554 44443 34455556666 4688899999998654 3333444 4566
Q ss_pred EEEcceeEecCCCeecccchHHHHHHHhhCC-CcEEE
Q 006577 526 VFLGASSVLSNGTVCSRVGTACVAMVAYGFH-IPVLV 561 (640)
Q Consensus 526 VlvGADaIlaNG~VvNKiGT~~lAlaAk~~~-VPVyV 561 (640)
|++- ... |= .+.-.=-..++-+||.+| ++++|
T Consensus 144 v~~E--sps-NP-~l~v~Dl~~i~~~a~~~g~~~~vV 176 (386)
T PF01053_consen 144 VFLE--SPS-NP-TLEVPDLEAIAKLAKEHGDILVVV 176 (386)
T ss_dssp EEEE--SSB-TT-TTB---HHHHHHHHHHTTT-EEEE
T ss_pred EEEE--cCC-Cc-ccccccHHHHHHHHHHhCCceEEe
Confidence 6554 222 21 122223345777899998 88777
No 302
>PRK06460 hypothetical protein; Provisional
Probab=28.90 E-value=6.9e+02 Score=27.31 Aligned_cols=58 Identities=14% Similarity=0.020 Sum_probs=28.0
Q ss_pred HHHhCCCceEEEech---HHHHHh-hhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 500 RLVRKGLSCTYTHIN---AISYII-HEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 500 eL~~~GI~vTlI~Ds---Av~~iM-~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
.+...|+.+.++... .+..+. ++...|++ ..---..|.+... -.|+-+|+.++++|+|
T Consensus 104 ~~~~~G~~v~~~~~~~~~~l~~~~~~~tklV~l-~sp~NPtG~v~d~---~~I~~la~~~g~~viv 165 (376)
T PRK06460 104 YLKNWGVNVDASNPGSDNIIEKAKSKRYDVVFV-ENITNPLLRVVDI---TELSKVCKENGSILIV 165 (376)
T ss_pred HHHhhCcEEEEECCCCHHHHHHhcCCCceEEEE-ECCCCCCCcccCH---HHHHHHHHHcCCEEEE
Confidence 344456666555311 122222 23445555 2112234555543 2466677888887665
No 303
>TIGR01814 kynureninase kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.
Probab=28.66 E-value=5.8e+02 Score=27.78 Aligned_cols=103 Identities=13% Similarity=0.075 Sum_probs=46.7
Q ss_pred CCCEEEeecCcHHHHHHHHHHHHcCC-eeEEEEcCCCCCchHHHHH--HHHHhCCCce----EEEe-ch-------HHHH
Q 006577 454 DGDVLLTYGSSSAVEMILQHAHELGK-QFRVVIVDSRPKHEGKLLL--RRLVRKGLSC----TYTH-IN-------AISY 518 (640)
Q Consensus 454 dgdvILT~g~SstV~~vL~~A~e~Gk-~f~ViV~ESRP~~eG~~La--~eL~~~GI~v----TlI~-Ds-------Av~~ 518 (640)
..++++|-+.|..+..++....+.+. .-.|++. ...+-....+ ..+...|+.+ .++. +. .+-.
T Consensus 86 ~~~v~~~~~~t~~l~~~~~~~~~~~~~~~~i~~~--~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~l~~ 163 (406)
T TIGR01814 86 EDEVVVMNTLTINLHLLLASFYKPTPKRYKILLE--AKAFPSDHYAIESQLQLHGLTVEESMVQIEPREEETLRLEDILD 163 (406)
T ss_pred CCcEEEeCCchHHHHHHHHHhcCCcCCccEEEec--CCCCChHHHHHHHHHHhcCCCcccceEEeccCCCCccCHHHHHH
Confidence 34677877776666555555433322 2233332 2222222222 2344567775 3332 21 2333
Q ss_pred Hhhhc---cEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 519 IIHEV---TRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 519 iM~~V---dkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
++... +++ |-...+...-++++. --.|+-+|+.+|+.|+|
T Consensus 164 ~~~~~~~~t~l-v~~~~v~~~tG~~~~--~~~i~~~~~~~g~~~~v 206 (406)
T TIGR01814 164 TIEKNGDDIAV-ILLSGVQYYTGQLFD--MAAITRAAHAKGALVGF 206 (406)
T ss_pred HHHhcCCCeEE-EEEeccccccceecC--HHHHHHHHHHcCCEEEE
Confidence 33211 122 222223322223333 33477788888888876
No 304
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=28.62 E-value=2.2e+02 Score=29.64 Aligned_cols=87 Identities=15% Similarity=0.086 Sum_probs=48.0
Q ss_pred EEEeecCcHHHHHHHHHHHHcCCeeEEE-EcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEcceeEec
Q 006577 457 VLLTYGSSSAVEMILQHAHELGKQFRVV-IVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLS 535 (640)
Q Consensus 457 vILT~g~SstV~~vL~~A~e~Gk~f~Vi-V~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGADaIla 535 (640)
.|..+|.++.+-..+..+..+...+++. +++..+...... ...|+. ... .+..++.++|.|+.-+
T Consensus 3 kV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~-----~~~~i~--~~~--dl~~ll~~~DvVid~t----- 68 (257)
T PRK00048 3 KVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ-----GALGVA--ITD--DLEAVLADADVLIDFT----- 68 (257)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc-----CCCCcc--ccC--CHHHhccCCCEEEECC-----
Confidence 5778887554433333333333446544 466555432211 223442 222 2334455677665433
Q ss_pred CCCeecccchHHHHHHHhhCCCcEEEe
Q 006577 536 NGTVCSRVGTACVAMVAYGFHIPVLVC 562 (640)
Q Consensus 536 NG~VvNKiGT~~lAlaAk~~~VPVyV~ 562 (640)
+.-..+.++..|-.+++||++.
T Consensus 69 -----~p~~~~~~~~~al~~G~~vvig 90 (257)
T PRK00048 69 -----TPEATLENLEFALEHGKPLVIG 90 (257)
T ss_pred -----CHHHHHHHHHHHHHcCCCEEEE
Confidence 5556688999999999999964
No 305
>PRK08114 cystathionine beta-lyase; Provisional
Probab=28.60 E-value=5e+02 Score=29.09 Aligned_cols=100 Identities=16% Similarity=0.198 Sum_probs=49.6
Q ss_pred ccCCCEEEeecCc-HHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHH-HHHHhCCCceEEEec---hHHHHHhhhccEE
Q 006577 452 IRDGDVLLTYGSS-SAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL-RRLVRKGLSCTYTHI---NAISYIIHEVTRV 526 (640)
Q Consensus 452 I~dgdvILT~g~S-stV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La-~eL~~~GI~vTlI~D---sAv~~iM~~VdkV 526 (640)
|..|+-.+.++.. ..+..++....+.|. +|++. ...+..-..+. ..|.+.||+|+++.- ..+...+..-+++
T Consensus 74 LEg~~~a~~~~SGmaAi~~~~~~ll~~GD--~Vv~~-~~~Yg~t~~l~~~~l~~~Gi~v~~vd~~d~~~l~~~l~~~Trl 150 (395)
T PRK08114 74 LEGGAGCALYPCGAAAVANAILAFVEQGD--HVLMT-GTAYEPTQDFCSKILSKLGVTTTWFDPLIGADIAKLIQPNTKV 150 (395)
T ss_pred HhCCCeEEEEhHHHHHHHHHHHHHcCCCC--EEEEe-CCCcHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCCCceE
Confidence 3445433333333 334445555554454 45544 33343444555 457778998888752 2344444432333
Q ss_pred EEcceeEecCCCeecccch----HHHHHHHhhCC--CcEEE
Q 006577 527 FLGASSVLSNGTVCSRVGT----ACVAMVAYGFH--IPVLV 561 (640)
Q Consensus 527 lvGADaIlaNG~VvNKiGT----~~lAlaAk~~~--VPVyV 561 (640)
|. .+. +.|..|. ..|+-+||.++ ++++|
T Consensus 151 V~-~Et------psNp~~~v~DI~~Ia~ia~~~g~g~~lvV 184 (395)
T PRK08114 151 VF-LES------PGSITMEVHDVPAIVAAVRSVNPDAVIMI 184 (395)
T ss_pred EE-EEC------CCCCCCEeecHHHHHHHHHHhCCCCEEEE
Confidence 31 222 2333332 34677788874 77765
No 306
>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=28.58 E-value=5.6e+02 Score=28.65 Aligned_cols=96 Identities=18% Similarity=0.273 Sum_probs=49.4
Q ss_pred EEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHH-H-HHHHhCCCceEEEech---HHHHHhh-hccEEEEcc
Q 006577 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLL-L-RRLVRKGLSCTYTHIN---AISYIIH-EVTRVFLGA 530 (640)
Q Consensus 457 vILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~L-a-~eL~~~GI~vTlI~Ds---Av~~iM~-~VdkVlvGA 530 (640)
.|++-+-+..+..+|......| -+|++.. +.+.|... . ..+...|+.++++.-. .+-..+. +...|++
T Consensus 81 al~~~SG~~Ai~~al~all~pG--d~VIv~~--~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~ai~~~tklV~v-- 154 (427)
T PRK05994 81 ALAVASGHAAQFLVFHTLLQPG--DEFIAAR--KLYGGSINQFGHAFKSFGWQVRWADADDPASFERAITPRTKAIFI-- 154 (427)
T ss_pred EEEEcCHHHHHHHHHHHHhCCC--CEEEEec--CcchhHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCcCCeEEEE--
Confidence 4444333334455555444444 3455543 44555432 2 4466788888887522 3333333 3444444
Q ss_pred eeEe-cCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 531 SSVL-SNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 531 DaIl-aNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
+.+. ..|.++. -..|+-+|++|+++++|
T Consensus 155 esp~NptG~v~d---l~~I~~la~~~gi~liv 183 (427)
T PRK05994 155 ESIANPGGTVTD---IAAIAEVAHRAGLPLIV 183 (427)
T ss_pred ECCCCCCCeecC---HHHHHHHHHHcCCEEEE
Confidence 2222 2344432 24577789999998886
No 307
>PRK08361 aspartate aminotransferase; Provisional
Probab=28.53 E-value=5.6e+02 Score=27.64 Aligned_cols=103 Identities=15% Similarity=0.149 Sum_probs=49.8
Q ss_pred ccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEe-chH------HHHHhh---
Q 006577 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-INA------ISYIIH--- 521 (640)
Q Consensus 452 I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~-DsA------v~~iM~--- 521 (640)
+...++++|.|.+..+..++....+.| -+|++.+ |.+.+.. ..+...|+.+..+. |.. +..+..
T Consensus 91 ~~~~~i~~t~G~~~al~~~~~~l~~~g--~~Vlv~~--p~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~ 164 (391)
T PRK08361 91 VDVDNVIVTAGAYEATYLAFESLLEEG--DEVIIPD--PAFVCYV--EDAKIAEAKPIRIPLREENEFQPDPDELLELIT 164 (391)
T ss_pred CCcccEEEeCChHHHHHHHHHHhcCCC--CEEEEcC--CCCcccH--HHHHHcCCEEEEEecCCccCCCCCHHHHHHhcc
Confidence 444567888777766665555544334 3555554 5554432 33344677766554 211 222222
Q ss_pred -hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 522 -EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 522 -~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
++..|++- .---..|.++..-=-..++-+|+++++.+++
T Consensus 165 ~~~~~v~i~-~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~ 204 (391)
T PRK08361 165 KRTRMIVIN-YPNNPTGATLDKEVAKAIADIAEDYNIYILS 204 (391)
T ss_pred cccEEEEEe-CCCCCCCcCcCHHHHHHHHHHHHHcCeEEEE
Confidence 33334332 1111223333322124466678888885554
No 308
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=28.51 E-value=1.6e+02 Score=31.52 Aligned_cols=68 Identities=15% Similarity=0.169 Sum_probs=38.3
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCC-eeEEEEcCC-CCCchHHHHHHHHHhCCCceEEEe---------chHHHHHhh--h
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGK-QFRVVIVDS-RPKHEGKLLLRRLVRKGLSCTYTH---------INAISYIIH--E 522 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk-~f~ViV~ES-RP~~eG~~La~eL~~~GI~vTlI~---------DsAv~~iM~--~ 522 (640)
-.||..++.+..+.+|. +.+.|. +.+|.++=| +|...+. ..+.|||+.++. +..+...|+ +
T Consensus 92 i~vl~Sg~g~nl~al~~-~~~~~~~~~~i~~visn~~~~~~l-----A~~~gIp~~~~~~~~~~~~~~~~~~~~~l~~~~ 165 (286)
T PRK13011 92 VLIMVSKFDHCLNDLLY-RWRIGELPMDIVGVVSNHPDLEPL-----AAWHGIPFHHFPITPDTKPQQEAQVLDVVEESG 165 (286)
T ss_pred EEEEEcCCcccHHHHHH-HHHcCCCCcEEEEEEECCccHHHH-----HHHhCCCEEEeCCCcCchhhhHHHHHHHHHHhC
Confidence 45677776666665554 455554 456555433 6653332 556799999863 112233344 5
Q ss_pred ccEEEEc
Q 006577 523 VTRVFLG 529 (640)
Q Consensus 523 VdkVlvG 529 (640)
+|.+++.
T Consensus 166 ~Dlivla 172 (286)
T PRK13011 166 AELVVLA 172 (286)
T ss_pred cCEEEEe
Confidence 7877654
No 309
>KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=28.49 E-value=4.3e+02 Score=29.57 Aligned_cols=107 Identities=19% Similarity=0.102 Sum_probs=65.8
Q ss_pred CCEEEeecCcHH-HHHHHHHHHHcCCeeEEEEcCCCCCc--hHHHHHHHHHhCCCceEEEe-----chHHHHHhhhccEE
Q 006577 455 GDVLLTYGSSSA-VEMILQHAHELGKQFRVVIVDSRPKH--EGKLLLRRLVRKGLSCTYTH-----INAISYIIHEVTRV 526 (640)
Q Consensus 455 gdvILT~g~Sst-V~~vL~~A~e~Gk~f~ViV~ESRP~~--eG~~La~eL~~~GI~vTlI~-----DsAv~~iM~~VdkV 526 (640)
+.++|..|-|+- .++++....+.+...+++++|-.|.. -..+.... ..-.++++. .+.+......+ .|
T Consensus 4 ~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~~~~e~~~~---~~~~v~~~~~D~~~~~~i~~a~~~~-~V 79 (361)
T KOG1430|consen 4 KLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSNLPAELTGF---RSGRVTVILGDLLDANSISNAFQGA-VV 79 (361)
T ss_pred CCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCccccccchhhhcc---cCCceeEEecchhhhhhhhhhccCc-eE
Confidence 467777777665 56677777777778999999988863 11111111 334455552 23344444455 33
Q ss_pred EEcceeEecCCC---------eecccchHHHHHHHhhCCCcEEEecccc
Q 006577 527 FLGASSVLSNGT---------VCSRVGTACVAMVAYGFHIPVLVCCEAY 566 (640)
Q Consensus 527 lvGADaIlaNG~---------VvNKiGT~~lAlaAk~~~VPVyV~aety 566 (640)
+.-|.... .+- -+|-.||..+=-+|+..||+.+|-..+.
T Consensus 80 vh~aa~~~-~~~~~~~~~~~~~vNV~gT~nvi~~c~~~~v~~lIYtSs~ 127 (361)
T KOG1430|consen 80 VHCAASPV-PDFVENDRDLAMRVNVNGTLNVIEACKELGVKRLIYTSSA 127 (361)
T ss_pred EEeccccC-ccccccchhhheeecchhHHHHHHHHHHhCCCEEEEecCc
Confidence 33222221 221 3578999999999999999999965543
No 310
>PRK07681 aspartate aminotransferase; Provisional
Probab=28.48 E-value=4.5e+02 Score=28.49 Aligned_cols=100 Identities=15% Similarity=0.077 Sum_probs=52.2
Q ss_pred CCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEech-H------HHHHh----hhc
Q 006577 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN-A------ISYII----HEV 523 (640)
Q Consensus 455 gdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds-A------v~~iM----~~V 523 (640)
.++|+|.|.+..+..++....+.| -+|++. .|.+.+.... +...|+.+..+... . +..+. +++
T Consensus 94 ~~I~it~G~~~al~~~~~~~~~~G--d~Vlv~--~P~y~~~~~~--~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~ 167 (399)
T PRK07681 94 KEVLLLMGSQDGLVHLPMVYANPG--DIILVP--DPGYTAYETG--IQMAGATSYYMPLKKENDFLPDLELIPEEIADKA 167 (399)
T ss_pred CeEEECCCcHHHHHHHHHHhCCCC--CEEEEC--CCCccchHHH--HHhcCCEEEEEecCCCCCCcCCHHHHHHhccccc
Confidence 567888887777665555443334 345554 3666554433 34568877766521 1 11121 234
Q ss_pred cEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 524 TRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 524 dkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
..|++- .-=-..|.++++-=-..|+-+|+.|++.+++
T Consensus 168 k~v~l~-~P~NPTG~~~s~~~~~~i~~~a~~~~~~iI~ 204 (399)
T PRK07681 168 KMMILN-FPGNPVPAMAHEDFFKEVIAFAKKHNIIVVH 204 (399)
T ss_pred eEEEEe-CCCCCcCcCCCHHHHHHHHHHHHHcCeEEEE
Confidence 444332 0000124444443355677788999986653
No 311
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=28.47 E-value=3.9e+02 Score=29.50 Aligned_cols=71 Identities=17% Similarity=0.231 Sum_probs=42.9
Q ss_pred CCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhh-ccEEEEcc
Q 006577 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHE-VTRVFLGA 530 (640)
Q Consensus 455 gdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~-VdkVlvGA 530 (640)
|.+|+..|..+.=..+.+.+++.| .+|++.|..+... ...+.+|.+.|+.+..-.+.. .+..+ +|.||..+
T Consensus 5 ~k~v~v~G~g~~G~s~a~~l~~~G--~~V~~~d~~~~~~-~~~~~~l~~~g~~~~~~~~~~--~~~~~~~d~vV~s~ 76 (447)
T PRK02472 5 NKKVLVLGLAKSGYAAAKLLHKLG--ANVTVNDGKPFSE-NPEAQELLEEGIKVICGSHPL--ELLDEDFDLMVKNP 76 (447)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCC--CEEEEEcCCCccc-hhHHHHHHhcCCEEEeCCCCH--HHhcCcCCEEEECC
Confidence 567888887764444455555555 5788888665322 234567888898765433322 22333 77777765
No 312
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=28.33 E-value=1.9e+02 Score=30.44 Aligned_cols=111 Identities=16% Similarity=0.111 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEeecC--cHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHH
Q 006577 423 ATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGS--SSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRR 500 (640)
Q Consensus 423 ~~L~e~Id~fi~E~i~~A~~~Ia~~a~~~I~dgdvILT~g~--SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~e 500 (640)
+.+.+.....+++-...-+....+.++++|.+-..|.-+|. |+.|- ..|.+.
T Consensus 98 ~~~~~~~~~~l~~t~~~l~~~~l~~av~~L~~A~rI~~~G~g~S~~vA--------------------------~~~~~~ 151 (281)
T COG1737 98 EKLLAANIAALERTLNLLDEEALERAVELLAKARRIYFFGLGSSGLVA--------------------------SDLAYK 151 (281)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCeEEEEEechhHHHH--------------------------HHHHHH
Confidence 33333333333333333344555667777877776666653 33321 235678
Q ss_pred HHhCCCceEEEechHHHHH----hhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEecccc
Q 006577 501 LVRKGLSCTYTHINAISYI----IHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAY 566 (640)
Q Consensus 501 L~~~GI~vTlI~DsAv~~i----M~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~aety 566 (640)
|...|++|.++.|....+. |..=|.||+ |.-.|. .-=+..++-.||++|+|++.++...
T Consensus 152 l~~ig~~~~~~~d~~~~~~~~~~~~~~Dv~i~----iS~sG~---t~e~i~~a~~ak~~ga~vIaiT~~~ 214 (281)
T COG1737 152 LMRIGLNVVALSDTHGQLMQLALLTPGDVVIA----ISFSGY---TREIVEAAELAKERGAKVIAITDSA 214 (281)
T ss_pred HHHcCCceeEecchHHHHHHHHhCCCCCEEEE----EeCCCC---cHHHHHHHHHHHHCCCcEEEEcCCC
Confidence 8999999999999988872 123455543 333442 2335677889999999999987663
No 313
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=28.33 E-value=1.6e+02 Score=25.00 Aligned_cols=35 Identities=11% Similarity=0.190 Sum_probs=23.2
Q ss_pred HHHHhCCCceEEEech--HHHHHhhhccEEEEcceeE
Q 006577 499 RRLVRKGLSCTYTHIN--AISYIIHEVTRVFLGASSV 533 (640)
Q Consensus 499 ~eL~~~GI~vTlI~Ds--Av~~iM~~VdkVlvGADaI 533 (640)
+.|.+.||+++...-. .......++|.||++.+--
T Consensus 22 ~~~~~~gi~~~~~~~~~~~~~~~~~~~D~il~~~~i~ 58 (90)
T PF02302_consen 22 KALKELGIEVEVSAGSILEVEEIADDADLILLTPQIA 58 (90)
T ss_dssp HHHHHTTECEEEEEEETTTHHHHHTT-SEEEEEESSG
T ss_pred HHHHhccCceEEEEecccccccccCCCcEEEEcCccc
Confidence 4566677777765544 5566666799999987644
No 314
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=28.28 E-value=1.4e+02 Score=31.04 Aligned_cols=95 Identities=14% Similarity=0.185 Sum_probs=52.1
Q ss_pred EEEeecCcHHHHHHH-HHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEech-HHHHHhh--hccEEEEccee
Q 006577 457 VLLTYGSSSAVEMIL-QHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN-AISYIIH--EVTRVFLGASS 532 (640)
Q Consensus 457 vILT~g~SstV~~vL-~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds-Av~~iM~--~VdkVlvGADa 532 (640)
+||..|-++.+-.-| ..+.++| +|++++-++.. +... +.|. ++..++. ++|.||=-|-.
T Consensus 2 ~iLVtG~~GfiGs~l~~~L~~~g---~V~~~~~~~~~-------------~~~D-l~d~~~~~~~~~~~~~D~Vih~Aa~ 64 (299)
T PRK09987 2 NILLFGKTGQVGWELQRALAPLG---NLIALDVHSTD-------------YCGD-FSNPEGVAETVRKIRPDVIVNAAAH 64 (299)
T ss_pred eEEEECCCCHHHHHHHHHhhccC---CEEEecccccc-------------ccCC-CCCHHHHHHHHHhcCCCEEEECCcc
Confidence 578888887765444 3344455 46666543210 0000 1222 3334444 35666533321
Q ss_pred EecC---C-----CeecccchHHHHHHHhhCCCcEEEecccccc
Q 006577 533 VLSN---G-----TVCSRVGTACVAMVAYGFHIPVLVCCEAYKF 568 (640)
Q Consensus 533 IlaN---G-----~VvNKiGT~~lAlaAk~~~VPVyV~aetyKf 568 (640)
...+ . .-+|-.||..++-+|+.++++|+.++..+=|
T Consensus 65 ~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g~~~v~~Ss~~Vy 108 (299)
T PRK09987 65 TAVDKAESEPEFAQLLNATSVEAIAKAANEVGAWVVHYSTDYVF 108 (299)
T ss_pred CCcchhhcCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEccceEE
Confidence 1111 0 1368889999999999999987776655544
No 315
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=28.15 E-value=4.4e+02 Score=30.43 Aligned_cols=78 Identities=21% Similarity=0.319 Sum_probs=47.7
Q ss_pred ccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchH-------------HHH---HHHHHhCCCceEEEe---
Q 006577 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEG-------------KLL---LRRLVRKGLSCTYTH--- 512 (640)
Q Consensus 452 I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG-------------~~L---a~eL~~~GI~vTlI~--- 512 (640)
+..|+.|+.+|-...=+.+...+.+.|. +|+|+|.++...| ..+ ...+.+.|+++.+-+
T Consensus 134 ~~~g~~V~VIGaGpaGL~aA~~l~~~G~--~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~ 211 (564)
T PRK12771 134 PDTGKRVAVIGGGPAGLSAAYHLRRMGH--AVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVG 211 (564)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC--eEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEEC
Confidence 4578999999988765555566666664 6888987765433 111 234566787765422
Q ss_pred -chHHHHHhhhccEEEEcce
Q 006577 513 -INAISYIIHEVTRVFLGAS 531 (640)
Q Consensus 513 -DsAv~~iM~~VdkVlvGAD 531 (640)
|-....+....|.||++.=
T Consensus 212 ~~~~~~~~~~~~D~Vi~AtG 231 (564)
T PRK12771 212 EDITLEQLEGEFDAVFVAIG 231 (564)
T ss_pred CcCCHHHHHhhCCEEEEeeC
Confidence 2123334446788887553
No 316
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=28.09 E-value=6.5e+02 Score=26.44 Aligned_cols=93 Identities=14% Similarity=0.170 Sum_probs=51.2
Q ss_pred CCEEEeecCcHH---HHHHHHHHHH-cCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEe-chHHHHHhhhccEEEEc
Q 006577 455 GDVLLTYGSSSA---VEMILQHAHE-LGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-INAISYIIHEVTRVFLG 529 (640)
Q Consensus 455 gdvILT~g~Sst---V~~vL~~A~e-~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~-DsAv~~iM~~VdkVlvG 529 (640)
.-+|+.++.+.. ...+|..|.+ -.....+++.-++... ..+...+. .|+.+.++- ...+..+|..+|.+++.
T Consensus 183 ~~~i~~~gg~~~~~~~~~~l~~a~~~~~~~~~~~~~~G~g~~--~~~~~~~~-~~~~v~~~g~~~~~~~~~~~~d~~i~~ 259 (357)
T PRK00726 183 KPTLLVVGGSQGARVLNEAVPEALALLPEALQVIHQTGKGDL--EEVRAAYA-AGINAEVVPFIDDMAAAYAAADLVICR 259 (357)
T ss_pred CeEEEEECCcHhHHHHHHHHHHHHHHhhhCcEEEEEcCCCcH--HHHHHHhh-cCCcEEEeehHhhHHHHHHhCCEEEEC
Confidence 346788887643 2334434432 1222233333222222 34445555 788755443 14678899999999863
Q ss_pred ceeEecCCCeecccchHHHHHHHhhCCCcEEEecc
Q 006577 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCE 564 (640)
Q Consensus 530 ADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~ae 564 (640)
+ | + ...+=|-.+|+|++++..
T Consensus 260 ~------g-------~-~~~~Ea~~~g~Pvv~~~~ 280 (357)
T PRK00726 260 A------G-------A-STVAELAAAGLPAILVPL 280 (357)
T ss_pred C------C-------H-HHHHHHHHhCCCEEEecC
Confidence 2 2 1 233456668999998754
No 317
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=27.91 E-value=1.9e+02 Score=27.19 Aligned_cols=72 Identities=10% Similarity=0.086 Sum_probs=43.5
Q ss_pred EEEcCCCCC-----chHHHHHHHHHhCCCce-E-EEechHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhC
Q 006577 483 VVIVDSRPK-----HEGKLLLRRLVRKGLSC-T-YTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGF 555 (640)
Q Consensus 483 ViV~ESRP~-----~eG~~La~eL~~~GI~v-T-lI~DsAv~~iM~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~ 555 (640)
+|++-+.|+ .+|-++++.+.+.|.++ + +..+.+|....+.. ...+.-.|- +.+...++..|
T Consensus 4 ~iv~~~~Py~~~~~~~al~~A~aa~~~gh~v~~vFf~~DgV~~a~~~q----------~p~~~~~n~--~~~~~~L~~~~ 71 (128)
T PRK00207 4 AIAVTGPAYGTQQASSAYQFAQALLAEGHELVSVFFYQDGVLNANALT----------VPASDEFDL--VRAWQQLAAEH 71 (128)
T ss_pred EEEEcCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEEehHHHHHHhcCC----------CCchhhhhH--HHHHHHHHHhc
Confidence 456667777 46777888888888763 3 33344555554432 122221122 34555778889
Q ss_pred CCcEEEecccc
Q 006577 556 HIPVLVCCEAY 566 (640)
Q Consensus 556 ~VPVyV~aety 566 (640)
+||+|||...-
T Consensus 72 ~v~l~vC~~~a 82 (128)
T PRK00207 72 GVALNVCVAAA 82 (128)
T ss_pred CCEEEEeHHHH
Confidence 99999987664
No 318
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=27.81 E-value=2e+02 Score=31.96 Aligned_cols=104 Identities=13% Similarity=0.112 Sum_probs=71.1
Q ss_pred CCEEEeec--CcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHH----HHHHHHhC--CCceEEEechH--HHHHhhhcc
Q 006577 455 GDVLLTYG--SSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKL----LLRRLVRK--GLSCTYTHINA--ISYIIHEVT 524 (640)
Q Consensus 455 gdvILT~g--~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~----La~eL~~~--GI~vTlI~DsA--v~~iM~~Vd 524 (640)
+--|.-+. +..++..+|+.|-+.+..+-+-+.++.=.+-|.. |++.+.+. .|||.+-+|-+ ...+++-++
T Consensus 15 ~yAV~AfN~~n~e~~~aii~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~~~~~ae~~~~VPValHLDHg~~~e~i~~Ai~ 94 (347)
T TIGR01521 15 GYGVPAFNVNNMEQMRAIMEAADKTDSPVILQASRGARSYAGAPFLRHLILAAIEEYPHIPVVMHQDHGNSPATCQRAIQ 94 (347)
T ss_pred CceEEEEeeCCHHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHH
Confidence 33444432 4467888888887776665544444332333433 34555544 38999999987 444554444
Q ss_pred EEEEcceeEecCCCee-----------cccchHHHHHHHhhCCCcEEE
Q 006577 525 RVFLGASSVLSNGTVC-----------SRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 525 kVlvGADaIlaNG~Vv-----------NKiGT~~lAlaAk~~~VPVyV 561 (640)
. |-.+|+-||+-. |--=|-.++-.||.+||.|=.
T Consensus 95 ~---GFtSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~GvsVEa 139 (347)
T TIGR01521 95 L---GFTSVMMDGSLREDAKTPADYDYNVRVTAEVVAFAHAVGASVEG 139 (347)
T ss_pred c---CCCEEeecCcCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 4 899999999998 888899999999999998643
No 319
>PRK09191 two-component response regulator; Provisional
Probab=27.78 E-value=4.9e+02 Score=25.78 Aligned_cols=93 Identities=19% Similarity=0.237 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHH---cCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEech---HHHHHhh-hccEEEEcceeEecCC
Q 006577 465 SAVEMILQHAHE---LGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN---AISYIIH-EVTRVFLGASSVLSNG 537 (640)
Q Consensus 465 stV~~vL~~A~e---~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds---Av~~iM~-~VdkVlvGADaIlaNG 537 (640)
++|..-+..|.+ .....+|++++..+.... .+...|...|+.+..+.++ +...+.. ..|.||+..+ +.+|
T Consensus 119 ~tV~~~l~ra~~~l~~~~~~~~liidd~~~~~~-~l~~~L~~~~~~~~~~~~~~~~~l~~l~~~~~dlvi~d~~--~~~~ 195 (261)
T PRK09191 119 AEAEALLDDARAEIARQVATRVLIIEDEPIIAM-DLEQLVESLGHRVTGIARTRAEAVALAKKTRPGLILADIQ--LADG 195 (261)
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEcCcHHHHH-HHHHHHhcCCCEEEEEECCHHHHHHHHhccCCCEEEEecC--CCCC
Confidence 456555555543 234457888877655432 3446777788887744433 2222222 4888988764 2222
Q ss_pred CeecccchHHHHHHHhhCCCcEEEecc
Q 006577 538 TVCSRVGTACVAMVAYGFHIPVLVCCE 564 (640)
Q Consensus 538 ~VvNKiGT~~lAlaAk~~~VPVyV~ae 564 (640)
.-|.-.+..+.+.+++|+++++.
T Consensus 196 ----~~g~e~l~~l~~~~~~pii~ls~ 218 (261)
T PRK09191 196 ----SSGIDAVNDILKTFDVPVIFITA 218 (261)
T ss_pred ----CCHHHHHHHHHHhCCCCEEEEeC
Confidence 11333333444444899999865
No 320
>COG0608 RecJ Single-stranded DNA-specific exonuclease [DNA replication, recombination, and repair]
Probab=27.78 E-value=2e+02 Score=32.78 Aligned_cols=77 Identities=22% Similarity=0.289 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhccCCCEEEeecCcH----HHHHHHHHH-HHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechH
Q 006577 441 DRVIVKHAVTKIRDGDVLLTYGSSS----AVEMILQHA-HELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA 515 (640)
Q Consensus 441 ~~~Ia~~a~~~I~dgdvILT~g~Ss----tV~~vL~~A-~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsA 515 (640)
.+..++...+.|..++.|+.|+.-- +--.++..+ ...|.++.+++....-..-| ....+...+.+..+++|+.
T Consensus 22 ~~~a~~~i~~ai~~~~~I~I~~d~DaDGitS~ail~~~L~~~g~~~~~~ip~~~~~~~g--~~~~~~~~~~~liItvD~G 99 (491)
T COG0608 22 MEKAAARIAEAIEKGEKILIYGDYDADGITSAAILAKALRRLGADVDYYIPNRFEEGYG--AIRKLKEEGADLIITVDNG 99 (491)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEecCcccHHHHHHHHHHHHHcCCceEEEeCCCccccch--HHHHHHhcCCCEEEEECCC
Confidence 3445555566777888888876321 111222222 23488999999987766666 3358889999999999988
Q ss_pred HHHH
Q 006577 516 ISYI 519 (640)
Q Consensus 516 v~~i 519 (640)
.+.+
T Consensus 100 ~~~~ 103 (491)
T COG0608 100 SGSL 103 (491)
T ss_pred cccH
Confidence 7765
No 321
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=27.71 E-value=7.5e+02 Score=29.41 Aligned_cols=81 Identities=12% Similarity=0.188 Sum_probs=43.8
Q ss_pred HhccCCCEEEeecCcH-----HHHHHHHHHHHcCCeeEEEEcCCCCCchHHHH-H-HHHHhCCCceEEEec-hHHHHHhh
Q 006577 450 TKIRDGDVLLTYGSSS-----AVEMILQHAHELGKQFRVVIVDSRPKHEGKLL-L-RRLVRKGLSCTYTHI-NAISYIIH 521 (640)
Q Consensus 450 ~~I~dgdvILT~g~Ss-----tV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~L-a-~eL~~~GI~vTlI~D-sAv~~iM~ 521 (640)
+++..|.+|+.+|-++ ++..+...+...+...+|.++.+.++.-|..- . ..-...|+++....+ ..+..++.
T Consensus 345 ~~l~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~ 424 (559)
T PRK12727 345 DPLERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLE 424 (559)
T ss_pred ccccCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHH
Confidence 4667788988887664 34444444444433345666666666555321 2 222345777776543 23444443
Q ss_pred ---hccEEEEcc
Q 006577 522 ---EVTRVFLGA 530 (640)
Q Consensus 522 ---~VdkVlvGA 530 (640)
+.|.|||=.
T Consensus 425 ~l~~~DLVLIDT 436 (559)
T PRK12727 425 RLRDYKLVLIDT 436 (559)
T ss_pred HhccCCEEEecC
Confidence 567666643
No 322
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=27.71 E-value=1.1e+03 Score=27.98 Aligned_cols=96 Identities=10% Similarity=0.047 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHhccC--CCEEEeecCcH----HHHHHHHHHHHcCCeeEEEEcCCCCCchHH-HHHHHHHhCCCceE
Q 006577 437 IILADRVIVKHAVTKIRD--GDVLLTYGSSS----AVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLLRRLVRKGLSCT 509 (640)
Q Consensus 437 i~~A~~~Ia~~a~~~I~d--gdvILT~g~Ss----tV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~-~La~eL~~~GI~vT 509 (640)
++.|...+++...+.+.. +..||.+|-.+ --+-+-++++..|.+..||+.. +....-. .+...|...|+++.
T Consensus 115 ME~AG~avA~~I~~~~~~~~~~~VlVlcGpGNNGGDGLVaAR~L~~~G~~V~V~~~~-~~~~~~~~~~~~~~~~~gi~~~ 193 (544)
T PLN02918 115 MELAGLSVAASIAEVYKPGEYSRVLAICGPGNNGGDGLVAARHLHHFGYKPFVCYPK-RTAKPLYTGLVTQLESLSVPFV 193 (544)
T ss_pred HHHHHHHHHHHHHHhcccccCCEEEEEECCCcCHHHHHHHHHHHHHCCCceEEEEcC-CCCcHHHHHHHHHHHHcCCCee
Confidence 344666666666655543 36788887543 2333345566678888887743 3222112 24467778888754
Q ss_pred EEechHHHHHhhhccEEEEcceeEecCC
Q 006577 510 YTHINAISYIIHEVTRVFLGASSVLSNG 537 (640)
Q Consensus 510 lI~DsAv~~iM~~VdkVlvGADaIlaNG 537 (640)
.+.+-. ..+....|.|| |+|+--|
T Consensus 194 ~~~~~~-~~l~~~~DlIV---DALFGtG 217 (544)
T PLN02918 194 SVEDLP-ADLSKDFDIIV---DAMFGFS 217 (544)
T ss_pred eccccc-hhhccCCCEEE---EeccccC
Confidence 332200 11114567654 7777666
No 323
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=27.64 E-value=5.9e+02 Score=28.04 Aligned_cols=94 Identities=21% Similarity=0.216 Sum_probs=50.9
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchH-HHHH-HHHHhCCCceEEEec---hHHHHHhh-hccEEEEc
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEG-KLLL-RRLVRKGLSCTYTHI---NAISYIIH-EVTRVFLG 529 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG-~~La-~eL~~~GI~vTlI~D---sAv~~iM~-~VdkVlvG 529 (640)
++++|-+-+..+..+|......|. +|++. .|.+.+ ..++ ..+...|++++++.. ..+...+. +...|++-
T Consensus 67 ~~~~~~sG~~Ai~~al~all~~GD--~Vl~~--~~~y~~t~~~~~~~~~~~gi~v~~~d~~~~e~l~~~i~~~tklV~le 142 (377)
T TIGR01324 67 GCYLYPSGLAAVTNSILAFVKAGD--HVLMV--DSAYEPTRYFCDIVLKRMGVDITYYDPLIGEDIATLIQPNTKVLFLE 142 (377)
T ss_pred cEEEECcHHHHHHHHHHHhcCCCC--EEEEc--CCCcHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCCCceEEEEE
Confidence 456655544555555555544443 56655 455544 3444 346677898887632 34444444 33333331
Q ss_pred ceeEecCCCeecccchH----HHHHHHhhCCCcEEE
Q 006577 530 ASSVLSNGTVCSRVGTA----CVAMVAYGFHIPVLV 561 (640)
Q Consensus 530 ADaIlaNG~VvNKiGT~----~lAlaAk~~~VPVyV 561 (640)
+..|..|.. .|+-+|+.+++.++|
T Consensus 143 --------sp~Np~g~~~dl~~I~~la~~~g~~liv 170 (377)
T TIGR01324 143 --------APSSITFEIQDIPAIAKAARNPGIVIMI 170 (377)
T ss_pred --------CCCCCCCcHHHHHHHHHHHHHcCCEEEE
Confidence 233444433 466788899988876
No 324
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=27.45 E-value=6.1e+02 Score=28.04 Aligned_cols=33 Identities=30% Similarity=0.282 Sum_probs=23.4
Q ss_pred HHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEe
Q 006577 515 AISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (640)
Q Consensus 515 Av~~iM~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~ 562 (640)
.+..+|..+|+||. +.||.+ .=+-.+++|++++
T Consensus 289 ~~~~~l~~ADlvI~-------------rSGt~T--~E~a~lg~P~Ili 321 (396)
T TIGR03492 289 AFAEILHWADLGIA-------------MAGTAT--EQAVGLGKPVIQL 321 (396)
T ss_pred hHHHHHHhCCEEEE-------------CcCHHH--HHHHHhCCCEEEE
Confidence 35678888887753 367755 3355689999986
No 325
>PRK07777 aminotransferase; Validated
Probab=27.44 E-value=7.5e+02 Score=26.55 Aligned_cols=99 Identities=19% Similarity=0.269 Sum_probs=47.6
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEec-----------hHHHHHhh-hc
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI-----------NAISYIIH-EV 523 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D-----------sAv~~iM~-~V 523 (640)
.+|+|.|.+..+..++......| -+|++. +|.+.+...+ +...|..+..+.. ..+-..+. ++
T Consensus 87 ~i~~t~G~~~al~~~~~~~~~~g--d~vli~--~p~y~~~~~~--~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~ 160 (387)
T PRK07777 87 EVLVTVGATEAIAAAVLGLVEPG--DEVLLI--EPYYDSYAAV--IAMAGAHRVPVPLVPDGRGFALDLDALRAAVTPRT 160 (387)
T ss_pred cEEEeCCcHHHHHHHHHHhcCCC--CEEEEe--CCCchhhHHH--HHHCCCEEEEeecCCccCCCcCCHHHHHHhcCccc
Confidence 58888888877766665443333 245553 3666654333 3344655544321 11112222 33
Q ss_pred cEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 524 TRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 524 dkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
..|++- .---.-|.++..---..++-+|+.|++.+++
T Consensus 161 ~~v~l~-~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~ 197 (387)
T PRK07777 161 RALIVN-SPHNPTGTVLTAAELAAIAELAVEHDLLVIT 197 (387)
T ss_pred EEEEEc-CCCCCCCccCCHHHHHHHHHHHHhcCcEEEE
Confidence 333321 1111123333322233456678889987765
No 326
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=27.42 E-value=2e+02 Score=32.02 Aligned_cols=95 Identities=18% Similarity=0.153 Sum_probs=68.5
Q ss_pred CcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHH----HHHHHHh-C-CCceEEEechHH--HHHhhhccEEEEcceeEe
Q 006577 463 SSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKL----LLRRLVR-K-GLSCTYTHINAI--SYIIHEVTRVFLGASSVL 534 (640)
Q Consensus 463 ~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~----La~eL~~-~-GI~vTlI~DsAv--~~iM~~VdkVlvGADaIl 534 (640)
+..++..+|+.|.+.+..+-+-+.++.=.+-|.. +++.+.+ . .|||.+-+|-+- -.+++-++ .|-.+|+
T Consensus 27 n~e~~~avi~AAee~~sPvIiq~s~~~~~~~g~~~~~~~~~~~a~~~~~VPValHLDHg~~~e~i~~ai~---~GftSVM 103 (347)
T PRK09196 27 NLEQVQAIMEAADETDSPVILQASAGARKYAGEPFLRHLILAAVEEYPHIPVVMHQDHGNSPATCQRAIQ---LGFTSVM 103 (347)
T ss_pred CHHHHHHHHHHHHHhCCCEEEECCccHhhhCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHH---cCCCEEE
Confidence 4567888888888777665555544433334433 3455554 3 389999999873 34444444 5899999
Q ss_pred cCCCee-----------cccchHHHHHHHhhCCCcEE
Q 006577 535 SNGTVC-----------SRVGTACVAMVAYGFHIPVL 560 (640)
Q Consensus 535 aNG~Vv-----------NKiGT~~lAlaAk~~~VPVy 560 (640)
-||+-. |--=|..+.-.||.+||.|=
T Consensus 104 iDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~Gv~VE 140 (347)
T PRK09196 104 MDGSLKADGKTPASYEYNVDVTRKVVEMAHACGVSVE 140 (347)
T ss_pred ecCCCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 999999 88999999999999999876
No 327
>PLN02735 carbamoyl-phosphate synthase
Probab=27.16 E-value=3.7e+02 Score=34.21 Aligned_cols=96 Identities=16% Similarity=0.260 Sum_probs=55.8
Q ss_pred CCEEEeecC--cHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEe------chHHHHHhh-hccE
Q 006577 455 GDVLLTYGS--SSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH------INAISYIIH-EVTR 525 (640)
Q Consensus 455 gdvILT~g~--SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~------DsAv~~iM~-~Vdk 525 (640)
|.++++.+. -.-+..+.+..++ ..|++|.++ | +++.|.+.||+|+.+. .+.+-.+.. ++|+
T Consensus 973 g~vliSv~d~~K~~~~~~a~~L~~--lG~~i~aT~------G--Ta~~L~~~Gi~~~~v~~~~~~~~~~~~~i~~~~i~~ 1042 (1102)
T PLN02735 973 GTVFISLNDLTKPHLVPIARGFLE--LGFRIVSTS------G--TAHFLELAGIPVERVLKLHEGRPHAGDMLANGQIQL 1042 (1102)
T ss_pred CeEEEEEecCCchhHHHHHHHHHH--CCCEEEEcc------H--HHHHHHHCCCceEEEeeccCCCccHHHHHHcCCeEE
Confidence 344554443 1233344444443 346666553 2 4577888999988763 223333333 7999
Q ss_pred EEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEeccc
Q 006577 526 VFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEA 565 (640)
Q Consensus 526 VlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~aet 565 (640)
||-- .+|.-.-..-.|.+=-+|-.++||++--..+
T Consensus 1043 vin~-----~~~~~~~~~d~~~iRr~a~~~~ip~~t~~~~ 1077 (1102)
T PLN02735 1043 MVIT-----SSGDALDQKDGRQLRRMALAYKVPIITTVAG 1077 (1102)
T ss_pred EEEC-----CCCccccccccHHHHHHHHHcCCCEEecHHH
Confidence 9753 2443321334678888999999999854333
No 328
>PRK12655 fructose-6-phosphate aldolase; Reviewed
Probab=27.13 E-value=5.8e+02 Score=26.43 Aligned_cols=97 Identities=16% Similarity=0.122 Sum_probs=55.2
Q ss_pred cHHHHHHHHHHHH---cCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHH----hhhccEEEEcceeEecC
Q 006577 464 SSAVEMILQHAHE---LGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYI----IHEVTRVFLGASSVLSN 536 (640)
Q Consensus 464 SstV~~vL~~A~e---~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~i----M~~VdkVlvGADaIlaN 536 (640)
+...+.++.+|++ .+.++-|=|.=|. +|.+.++.|.+.||+|..+..-++.-. ...++.|=....++-.+
T Consensus 62 ~~d~e~mi~eA~~l~~~~~nv~IKIP~T~---~Gl~Ai~~L~~~GI~vn~T~vfs~~Qa~~Aa~aGa~yIspyvgR~~~~ 138 (220)
T PRK12655 62 SRDAQGMVEEAKRLRNAIPGIVVKIPVTA---EGLAAIKKLKKEGIPTLGTAVYSAAQGLLAALAGAKYVAPYVNRVDAQ 138 (220)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEEeCCCH---HHHHHHHHHHHCCCceeEeEecCHHHHHHHHHcCCeEEEeecchHhHc
Confidence 4456677777664 3445444444444 898889999999999886654333333 33566665555566554
Q ss_pred CCeecccchHHHHH---HHhhCCCcEEEeccccc
Q 006577 537 GTVCSRVGTACVAM---VAYGFHIPVLVCCEAYK 567 (640)
Q Consensus 537 G~VvNKiGT~~lAl---aAk~~~VPVyV~aetyK 567 (640)
|. -|.-.+.- +-+.|+.+.=|++-++|
T Consensus 139 g~----dg~~~i~~~~~~~~~~~~~tkILaAS~r 168 (220)
T PRK12655 139 GG----DGIRMVQELQTLLEMHAPESMVLAASFK 168 (220)
T ss_pred CC----CHHHHHHHHHHHHHhcCCCcEEEEEecC
Confidence 42 23222222 22244556666666654
No 329
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=27.08 E-value=3.8e+02 Score=25.52 Aligned_cols=39 Identities=5% Similarity=-0.057 Sum_probs=26.6
Q ss_pred hhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEeccc
Q 006577 520 IHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEA 565 (640)
Q Consensus 520 M~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~aet 565 (640)
+++=|.+|+ |...| +.--+..++-.||.+|+|+++++..
T Consensus 77 ~~~~D~~i~----iS~sG---~t~~~~~~~~~a~~~g~~ii~iT~~ 115 (154)
T TIGR00441 77 GQKGDVLLG----ISTSG---NSKNVLKAIEAAKDKGMKTITLAGK 115 (154)
T ss_pred CCCCCEEEE----EcCCC---CCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 345566664 33344 3445667788999999999998763
No 330
>PRK07589 ornithine cyclodeaminase; Validated
Probab=27.04 E-value=4.9e+02 Score=28.72 Aligned_cols=98 Identities=14% Similarity=0.142 Sum_probs=59.2
Q ss_pred HHHHhcc--CCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhcc
Q 006577 447 HAVTKIR--DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVT 524 (640)
Q Consensus 447 ~a~~~I~--dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd 524 (640)
.+.+++. +-.+++.+|.......-++.+..-..--+|+|. +|-...-..++.++.+.|+++....+ +-.+..++|
T Consensus 119 la~~~Lar~da~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~-~r~~~~a~~~~~~~~~~~~~v~~~~~--~~~av~~AD 195 (346)
T PRK07589 119 LAAKYLARPDSRTMALIGNGAQSEFQALAFKALLGIEEIRLY-DIDPAATAKLARNLAGPGLRIVACRS--VAEAVEGAD 195 (346)
T ss_pred HHHHHhccCCCcEEEEECCcHHHHHHHHHHHHhCCceEEEEE-eCCHHHHHHHHHHHHhcCCcEEEeCC--HHHHHhcCC
Confidence 3455552 346777888776554444333332222345555 33333345677888888888886543 556668899
Q ss_pred EEEEcc---e-------eEecCCCeecccchHH
Q 006577 525 RVFLGA---S-------SVLSNGTVCSRVGTAC 547 (640)
Q Consensus 525 kVlvGA---D-------aIlaNG~VvNKiGT~~ 547 (640)
.|+.-. + ..+..|..+|-||++.
T Consensus 196 IIvtaT~S~~~~Pvl~~~~lkpG~hV~aIGs~~ 228 (346)
T PRK07589 196 IITTVTADKTNATILTDDMVEPGMHINAVGGDC 228 (346)
T ss_pred EEEEecCCCCCCceecHHHcCCCcEEEecCCCC
Confidence 888744 2 2446788888888765
No 331
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=26.99 E-value=6.3e+02 Score=26.77 Aligned_cols=108 Identities=14% Similarity=0.116 Sum_probs=59.6
Q ss_pred CCCEEEeecCcHHHHH-HHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEe-----chHHHHHhhhccEEE
Q 006577 454 DGDVLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-----INAISYIIHEVTRVF 527 (640)
Q Consensus 454 dgdvILT~g~SstV~~-vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~-----DsAv~~iM~~VdkVl 527 (640)
.+.+||..|-++.+-. +.+.+.++| .+|+++.-.+ .....+...+.. +-.++++. +..+..++.++|.||
T Consensus 9 ~~~~vLVtG~~GfIG~~l~~~L~~~G--~~V~~~~r~~-~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 84 (353)
T PLN02896 9 ATGTYCVTGATGYIGSWLVKLLLQRG--YTVHATLRDP-AKSLHLLSKWKE-GDRLRLFRADLQEEGSFDEAVKGCDGVF 84 (353)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC--CEEEEEeCCh-HHHHHHHHhhcc-CCeEEEEECCCCCHHHHHHHHcCCCEEE
Confidence 4568888898876654 445555555 5677664332 223333333332 33444443 234556677899888
Q ss_pred EcceeEecCC-----Ce-----ec-----ccchHHHHHHHhhCC-CcEEEeccc
Q 006577 528 LGASSVLSNG-----TV-----CS-----RVGTACVAMVAYGFH-IPVLVCCEA 565 (640)
Q Consensus 528 vGADaIlaNG-----~V-----vN-----KiGT~~lAlaAk~~~-VPVyV~aet 565 (640)
--|-..-.+. +. .| -.||..+.-+|+.++ +.-+|...+
T Consensus 85 h~A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~~~~~~v~~SS 138 (353)
T PLN02896 85 HVAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSKTVKRVVFTSS 138 (353)
T ss_pred ECCccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcCCccEEEEEec
Confidence 8774322111 00 12 268888888777664 655555444
No 332
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....
Probab=26.79 E-value=98 Score=28.51 Aligned_cols=70 Identities=17% Similarity=0.179 Sum_probs=46.3
Q ss_pred cCcHHHHHHHHHHHHc--CCeeEEEEcCCC--CCchHHHH-HHHHHhCCCceE-EEechHHHHHhhhccEEEEcce
Q 006577 462 GSSSAVEMILQHAHEL--GKQFRVVIVDSR--PKHEGKLL-LRRLVRKGLSCT-YTHINAISYIIHEVTRVFLGAS 531 (640)
Q Consensus 462 g~SstV~~vL~~A~e~--Gk~f~ViV~ESR--P~~eG~~L-a~eL~~~GI~vT-lI~DsAv~~iM~~VdkVlvGAD 531 (640)
|+|..++.++++..++ +.+|.|+-.-+. |...=... ...|.+.||+.. ..+-.--...+.+.|.||.=.+
T Consensus 10 cRS~mAEai~~~~~~~~~~~~~~v~SAG~~~~~~~~~~~~a~~~l~~~gid~~~~~s~~l~~~~~~~~D~Ii~m~~ 85 (138)
T PF01451_consen 10 CRSPMAEAILRHLLKQRLGDRFEVESAGTEAWPGEPVDPRAIAVLKEHGIDISGHRSRQLTEEDLDEADLIITMDD 85 (138)
T ss_dssp SHHHHHHHHHHHHHHHTHTTTEEEEEEESSSTTTSSSTHHHHHHHHHTTSSCTTSBBCBGGHHHHHHSSEEEESSH
T ss_pred chHHHHHHHHHHhccccccCCcEEEEEeecccccccccchHHHHHHHhCCCcccceeccccccccccCCEEEEccH
Confidence 5667788888887553 678999987666 33332333 488999999876 3333333455678999976544
No 333
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=26.72 E-value=2e+02 Score=28.62 Aligned_cols=96 Identities=15% Similarity=0.271 Sum_probs=47.4
Q ss_pred CEEEeecCcH----HHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEec---hHHHHHhhh--ccEE
Q 006577 456 DVLLTYGSSS----AVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI---NAISYIIHE--VTRV 526 (640)
Q Consensus 456 dvILT~g~Ss----tV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D---sAv~~iM~~--VdkV 526 (640)
..|..||-|- .+..++....++....+|+++-+.| .|.+++..+...++.+.|.+. .++..++.. -+.+
T Consensus 22 ~~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~--tg~~~~~~~~~~~v~~~~~P~D~~~~~~rfl~~~~P~~~ 99 (186)
T PF04413_consen 22 PLIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTP--TGREMARKLLPDRVDVQYLPLDFPWAVRRFLDHWRPDLL 99 (186)
T ss_dssp T-EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-C--CHHHHHHGG-GGG-SEEE---SSHHHHHHHHHHH--SEE
T ss_pred CcEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCC--chHHHHHHhCCCCeEEEEeCccCHHHHHHHHHHhCCCEE
Confidence 8999999983 3455666666555567888776644 577888666556888999883 234455553 3554
Q ss_pred E-EcceeEecCCCeecccchHHHHHHHhhCCCcEEEeccc
Q 006577 527 F-LGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEA 565 (640)
Q Consensus 527 l-vGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~aet 565 (640)
| ++.|- -.| +-..|+..|||++.+...
T Consensus 100 i~~EtEl-WPn-----------ll~~a~~~~ip~~LvNar 127 (186)
T PF04413_consen 100 IWVETEL-WPN-----------LLREAKRRGIPVVLVNAR 127 (186)
T ss_dssp EEES-----HH-----------HHHH-----S-EEEEEE-
T ss_pred EEEcccc-CHH-----------HHHHHhhcCCCEEEEeee
Confidence 4 44443 333 556788899999987543
No 334
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=26.56 E-value=1.9e+02 Score=26.15 Aligned_cols=58 Identities=17% Similarity=0.223 Sum_probs=36.2
Q ss_pred hccCCCEEEeecCcHH---HHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechH
Q 006577 451 KIRDGDVLLTYGSSSA---VEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA 515 (640)
Q Consensus 451 ~I~dgdvILT~g~Sst---V~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsA 515 (640)
.+..+|+++.+++|+. +...++.|+++|.+ ++.+-+. + .|+..-.+.|+.+..+++..
T Consensus 40 ~~~~~dl~I~iS~SG~t~e~i~~~~~a~~~g~~--iI~IT~~----~-~l~~~~~~~~~~~~~~p~~~ 100 (119)
T cd05017 40 FVDRKTLVIAVSYSGNTEETLSAVEQAKERGAK--IVAITSG----G-KLLEMAREHGVPVIIIPKGL 100 (119)
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCE--EEEEeCC----c-hHHHHHHHcCCcEEECCCCC
Confidence 5667899999887754 66677788877643 3333221 1 25554444677777777644
No 335
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=26.47 E-value=3.7e+02 Score=30.43 Aligned_cols=71 Identities=17% Similarity=0.155 Sum_probs=41.2
Q ss_pred CCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEcc
Q 006577 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA 530 (640)
Q Consensus 455 gdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGA 530 (640)
+..|+.+|...+=..+.+.+++.| ++|++.|.++... ....|.+.|+.+.+....-....+..+|.||+..
T Consensus 7 ~~~i~v~G~G~sG~s~a~~L~~~G--~~v~~~D~~~~~~---~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~sp 77 (498)
T PRK02006 7 GPMVLVLGLGESGLAMARWCARHG--ARLRVADTREAPP---NLAALRAELPDAEFVGGPFDPALLDGVDLVALSP 77 (498)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCC--CEEEEEcCCCCch---hHHHHHhhcCCcEEEeCCCchhHhcCCCEEEECC
Confidence 455666665443334555566556 6889999887543 2345777765544443221123445788888864
No 336
>PRK08363 alanine aminotransferase; Validated
Probab=26.16 E-value=4.3e+02 Score=28.58 Aligned_cols=40 Identities=20% Similarity=0.228 Sum_probs=22.1
Q ss_pred cCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHH
Q 006577 453 RDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKL 496 (640)
Q Consensus 453 ~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~ 496 (640)
...++++|.|.+..+..++....+.| -+|++. .|.+.+..
T Consensus 92 ~~~~i~it~G~~~al~~~~~~~~~~g--d~Vl~~--~p~y~~~~ 131 (398)
T PRK08363 92 TPDDVRVTAAVTEALQLIFGALLDPG--DEILIP--GPSYPPYT 131 (398)
T ss_pred ChhhEEEeCCHHHHHHHHHHHhCCCC--CEEEEc--CCCCcchH
Confidence 34467777777766665555443333 345554 35555543
No 337
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=25.97 E-value=5.1e+02 Score=26.63 Aligned_cols=107 Identities=16% Similarity=0.153 Sum_probs=58.6
Q ss_pred CCEEEeecCcHHHHH-HHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHh-CC--CceEEE-----echHHHHHhhhccE
Q 006577 455 GDVLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVR-KG--LSCTYT-----HINAISYIIHEVTR 525 (640)
Q Consensus 455 gdvILT~g~SstV~~-vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~-~G--I~vTlI-----~DsAv~~iM~~Vdk 525 (640)
|.+||..|-++.+-. +++.+.++|.. |+++.-++.... .+ ..|.. .+ -.++++ -...+..+++++|.
T Consensus 4 ~~~ilVtGatGfIG~~l~~~L~~~g~~--V~~~~r~~~~~~-~~-~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~ 79 (322)
T PLN02662 4 GKVVCVTGASGYIASWLVKLLLQRGYT--VKATVRDPNDPK-KT-EHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEG 79 (322)
T ss_pred CCEEEEECChHHHHHHHHHHHHHCCCE--EEEEEcCCCchh-hH-HHHHhccCCCCceEEEeccccCcchHHHHHcCCCE
Confidence 467999998887644 44556666654 444432222211 11 11211 11 123333 22456777889999
Q ss_pred EEEcceeEec---CCC----eecccchHHHHHHHhhC-CCcEEEeccc
Q 006577 526 VFLGASSVLS---NGT----VCSRVGTACVAMVAYGF-HIPVLVCCEA 565 (640)
Q Consensus 526 VlvGADaIla---NG~----VvNKiGT~~lAlaAk~~-~VPVyV~aet 565 (640)
||--|-.+.. +.. -.|-.||..+.-+|+.+ ++.-+|.+.+
T Consensus 80 Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~~v~~SS 127 (322)
T PLN02662 80 VFHTASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKVPSVKRVVVTSS 127 (322)
T ss_pred EEEeCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEccC
Confidence 9887754322 111 12678999888877776 7754444333
No 338
>TIGR02434 CobF precorrin-6A synthase (deacetylating). This model identifies CobF in High GC gram positive, alphaproteobacteria and pseudomonas-related species.
Probab=25.89 E-value=2.8e+02 Score=29.14 Aligned_cols=24 Identities=17% Similarity=0.012 Sum_probs=12.0
Q ss_pred eecccchHHHHHHHhhCCCcEEEec
Q 006577 539 VCSRVGTACVAMVAYGFHIPVLVCC 563 (640)
Q Consensus 539 VvNKiGT~~lAlaAk~~~VPVyV~a 563 (640)
++-+.|......+++ .+.+++|+.
T Consensus 183 vilk~~~~~~~~l~~-~~~~~~v~e 206 (249)
T TIGR02434 183 VVMLDGEQAFQRVDP-EDIDIYWGA 206 (249)
T ss_pred EEEECCccCHHHhcC-CCCEEEEEE
Confidence 444555553444443 355666653
No 339
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=25.81 E-value=2.9e+02 Score=27.47 Aligned_cols=83 Identities=18% Similarity=0.159 Sum_probs=42.6
Q ss_pred EEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEcceeEecCCCeeccc-chHHHHHHHhhCCCcEE
Q 006577 482 RVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRV-GTACVAMVAYGFHIPVL 560 (640)
Q Consensus 482 ~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGADaIlaNG~VvNKi-GT~~lAlaAk~~~VPVy 560 (640)
+|.|++-.=.+- ..+++.|.+.|+.+.++.+. .-+.++|.+|++--... +.....+ +.....--+...++|++
T Consensus 2 ~~~v~~~~~~~~-~~~~~~l~~~G~~~~~~~~~---~~~~~~d~iii~G~~~~--~~~~~~~~~~~~~i~~~~~~~~Pil 75 (200)
T PRK13143 2 MIVIIDYGVGNL-RSVSKALERAGAEVVITSDP---EEILDADGIVLPGVGAF--GAAMENLSPLRDVILEAARSGKPFL 75 (200)
T ss_pred eEEEEECCCccH-HHHHHHHHHCCCeEEEECCH---HHHccCCEEEECCCCCH--HHHHHHHHHHHHHHHHHHHcCCCEE
Confidence 344444332222 45667788888887777542 23457888777641000 0111111 11122223445689999
Q ss_pred Eecccccccc
Q 006577 561 VCCEAYKFHE 570 (640)
Q Consensus 561 V~aetyKf~~ 570 (640)
-+|--+-+--
T Consensus 76 gIC~G~q~l~ 85 (200)
T PRK13143 76 GICLGMQLLF 85 (200)
T ss_pred EECHHHHHHh
Confidence 8887655433
No 340
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=25.80 E-value=2.4e+02 Score=29.96 Aligned_cols=28 Identities=21% Similarity=0.172 Sum_probs=17.0
Q ss_pred Ceecccch----HHHHHHHhhCCCcEEEecccc
Q 006577 538 TVCSRVGT----ACVAMVAYGFHIPVLVCCEAY 566 (640)
Q Consensus 538 ~VvNKiGT----~~lAlaAk~~~VPVyV~aety 566 (640)
.+.|..|+ -.|+-+|++|++++++ =+.|
T Consensus 182 ~v~~~~G~~~~~~~l~~la~~~~~~li~-De~~ 213 (397)
T PRK06939 182 GVFSMDGDIAPLPEICDLADKYDALVMV-DDSH 213 (397)
T ss_pred cCcCCCCCcCCHHHHHHHHHHhCCEEEE-ECcc
Confidence 34455443 3456678999998765 3444
No 341
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=25.79 E-value=8.6e+02 Score=26.32 Aligned_cols=100 Identities=13% Similarity=0.236 Sum_probs=49.5
Q ss_pred EEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHH-HHH-HHHHhCCCceEEEech---HHHHHhh-hccEEEEcc
Q 006577 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLL-RRLVRKGLSCTYTHIN---AISYIIH-EVTRVFLGA 530 (640)
Q Consensus 457 vILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~-~La-~eL~~~GI~vTlI~Ds---Av~~iM~-~VdkVlvGA 530 (640)
.|++-+-+..+.. +..+...|. +|++. .|.+.|. .+. ..+...|+.+.++... .+-..+. +...|++-
T Consensus 70 ~~~~~sG~~ai~~-~~~ll~~Gd--~Vl~~--~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~l~~~i~~~tklv~le- 143 (366)
T PRK08247 70 GFACSSGMAAIQL-VMSLFRSGD--ELIVS--SDLYGGTYRLFEEHWKKWNVRFVYVNTASLKAIEQAITPNTKAIFIE- 143 (366)
T ss_pred EEEEcCHHHHHHH-HHHHhCCCC--EEEEe--cCCcCcHHHHHHHHhhccCceEEEECCCCHHHHHHhcccCceEEEEE-
Confidence 4555444444443 334444443 55554 3555553 233 4566789988887532 2222332 34444441
Q ss_pred eeEecCCCeecccchHHHHHHHhhCCCcEEEecccc
Q 006577 531 SSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAY 566 (640)
Q Consensus 531 DaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~aety 566 (640)
..|.-+....--..|+-+|+.|+++++| =++|
T Consensus 144 ---~P~NP~~~~~dl~~I~~la~~~g~~lIv-D~t~ 175 (366)
T PRK08247 144 ---TPTNPLMQETDIAAIAKIAKKHGLLLIV-DNTF 175 (366)
T ss_pred ---CCCCCCCcHHHHHHHHHHHHHcCCEEEE-ECCC
Confidence 1221122222234467788999987765 3444
No 342
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=25.79 E-value=1.4e+02 Score=33.11 Aligned_cols=32 Identities=22% Similarity=0.322 Sum_probs=24.7
Q ss_pred EEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCC
Q 006577 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRP 490 (640)
Q Consensus 457 vILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP 490 (640)
+||..|.+.....+++.|++.| ++|+++++.+
T Consensus 4 ~ililg~g~~~~~~~~~a~~lG--~~~v~~~~~~ 35 (450)
T PRK06111 4 KVLIANRGEIAVRIIRTCQKLG--IRTVAIYSEA 35 (450)
T ss_pred eEEEECCcHHHHHHHHHHHHcC--CeEEEEechh
Confidence 6899999999899999999877 4555555443
No 343
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=25.74 E-value=4.5e+02 Score=26.52 Aligned_cols=56 Identities=11% Similarity=0.119 Sum_probs=36.7
Q ss_pred CCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEech
Q 006577 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN 514 (640)
Q Consensus 455 gdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds 514 (640)
+.+|++.+.+.....+-..|...|.++.|++.+.-|. .-...|...|..|..+...
T Consensus 50 ~~~vv~~ssGN~g~alA~~a~~~g~~~~v~~p~~~~~----~~~~~~~~~Ga~v~~~~~~ 105 (244)
T cd00640 50 KGVIIESTGGNTGIALAAAAARLGLKCTIVMPEGASP----EKVAQMRALGAEVVLVPGD 105 (244)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCCH----HHHHHHHHCCCEEEEECCC
Confidence 5678887766666666666666788888887766531 2235566667777766543
No 344
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=25.66 E-value=1.9e+02 Score=33.00 Aligned_cols=71 Identities=20% Similarity=0.261 Sum_probs=42.5
Q ss_pred CCEEEeecCcH--HHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHH-HhCCC--ceEEEechHHHHHhh-hccEEE
Q 006577 455 GDVLLTYGSSS--AVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRL-VRKGL--SCTYTHINAISYIIH-EVTRVF 527 (640)
Q Consensus 455 gdvILT~g~Ss--tV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL-~~~GI--~vTlI~DsAv~~iM~-~VdkVl 527 (640)
+.+||..|..+ .+..+++.+.+.+...+||.+|-.|.-- ..++.+ ...|. .|++|...+=-.-.+ +||.+|
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~--~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIV 263 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAV--VTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIV 263 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHH--HHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHH--HHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEE
Confidence 46899988764 4555666666778899999999887421 222333 44443 578777554444444 566664
No 345
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=25.64 E-value=1.8e+02 Score=32.02 Aligned_cols=70 Identities=17% Similarity=0.215 Sum_probs=38.4
Q ss_pred EEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhh--hccEEEEcceeE
Q 006577 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIH--EVTRVFLGASSV 533 (640)
Q Consensus 457 vILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~--~VdkVlvGADaI 533 (640)
+||.+|..+.-..+...+++.+...+||| -|.+.|..+.-+ .+...+.....+-.+.+ ++|.|+.|.+..
T Consensus 2 kvliiG~G~~~~~l~~~l~~~~~~~~i~~---~~~n~g~~~~~~----~~~~~~~d~~~l~~~~~~~~id~vi~~~e~~ 73 (420)
T PRK00885 2 KVLVIGSGGREHALAWKLAQSPLVEKVYV---APGNAGTALLAE----NVVIDVTDIEALVAFAKEEGIDLTVVGPEAP 73 (420)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCCEEEE---eCCCHHHHhhcc----ccCCCCCCHHHHHHHHHHhCCCEEEECCchH
Confidence 68999998776666666666543346666 455666544311 12211122223333333 478888777643
No 346
>PRK07049 methionine gamma-lyase; Validated
Probab=25.59 E-value=7.6e+02 Score=27.68 Aligned_cols=55 Identities=16% Similarity=0.094 Sum_probs=32.9
Q ss_pred CCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHH--HHHHhCCCceEEEec
Q 006577 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL--RRLVRKGLSCTYTHI 513 (640)
Q Consensus 455 gdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La--~eL~~~GI~vTlI~D 513 (640)
.+.|+|-+-+..+..+|....+.|. +|++. .|.+.|.... ..|...|+.+..+.|
T Consensus 99 ~~~iv~~sG~~Ai~~~l~al~~~Gd--~Vv~~--~p~Y~~~~~~~~~~l~~~Gi~~v~~~~ 155 (427)
T PRK07049 99 ESAALFSSGMSAIATTLLAFVRPGD--VILHS--QPLYGGTETLLAKTFRNFGVGAVGFAD 155 (427)
T ss_pred CcEEEEccHHHHHHHHHHHHhCCCC--EEEEc--CCCcccHHHHHHHHHHhcCcEEEEEeC
Confidence 3677776656655556655555554 45543 4777665443 446778998555544
No 347
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=25.59 E-value=2.1e+02 Score=28.22 Aligned_cols=69 Identities=16% Similarity=0.115 Sum_probs=38.6
Q ss_pred HHHHHHHhCCCceEEEechHHHHHhhhccEEEEcceeEecCC-CeecccchHHHHHHHhhCCCcEEEeccccc
Q 006577 496 LLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNG-TVCSRVGTACVAMVAYGFHIPVLVCCEAYK 567 (640)
Q Consensus 496 ~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGADaIlaNG-~VvNKiGT~~lAlaAk~~~VPVyV~aetyK 567 (640)
.+++.|.+.|++++++.+.. -+.+.|.||++--.....- ......|....-.-+...++|++-+|--+-
T Consensus 13 ~~~~~l~~~g~~v~v~~~~~---~l~~~d~iiipG~~~~~~~~~~~~~~~~~~~i~~~~~~~~pilGiC~G~q 82 (198)
T cd01748 13 SVANALERLGAEVIITSDPE---EILSADKLILPGVGAFGDAMANLRERGLIEALKEAIASGKPFLGICLGMQ 82 (198)
T ss_pred HHHHHHHHCCCeEEEEcChH---HhccCCEEEECCCCcHHHHHHHHHHcChHHHHHHHHHCCCcEEEECHHHH
Confidence 45688888899888887532 2457888877541110000 001122443333344456999997775543
No 348
>PLN00175 aminotransferase family protein; Provisional
Probab=25.51 E-value=7.6e+02 Score=27.20 Aligned_cols=92 Identities=13% Similarity=0.174 Sum_probs=49.5
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEech---------HHHHHh-hhccE
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN---------AISYII-HEVTR 525 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds---------Av~~iM-~~Vdk 525 (640)
++++|.|.+..+..++....+.| -+|++.+ |.+.+...+ +...|+.+..+... .+-..+ +++..
T Consensus 117 ~I~vt~G~~~al~~~~~~l~~~g--d~Vlv~~--P~y~~~~~~--~~~~g~~~~~v~~~~~~~~~~~~~l~~~~~~~~k~ 190 (413)
T PLN00175 117 EVTVTSGCTEAIAATILGLINPG--DEVILFA--PFYDSYEAT--LSMAGAKIKTVTLRPPDFAVPEDELKAAFTSKTRA 190 (413)
T ss_pred CEEEeCCHHHHHHHHHHHhCCCC--CEEEEeC--CCchhHHHH--HHHcCCEEEEEECCcccCCCCHHHHHHhcCcCceE
Confidence 57778777776655555444334 3566653 776654433 34467777766421 111111 13333
Q ss_pred EEEcceeEecCCCeecccchH-------HHHHHHhhCCCcEEE
Q 006577 526 VFLGASSVLSNGTVCSRVGTA-------CVAMVAYGFHIPVLV 561 (640)
Q Consensus 526 VlvGADaIlaNG~VvNKiGT~-------~lAlaAk~~~VPVyV 561 (640)
|++. +.-|..|+. .++-+|+.|++.+++
T Consensus 191 i~i~--------~p~NPtG~~~s~~~l~~l~~~a~~~~~~ii~ 225 (413)
T PLN00175 191 ILIN--------TPHNPTGKMFTREELELIASLCKENDVLAFT 225 (413)
T ss_pred EEec--------CCCCCCCcCCCHHHHHHHHHHHHHcCcEEEE
Confidence 3332 223666654 466778888875553
No 349
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=25.38 E-value=2.1e+02 Score=28.79 Aligned_cols=92 Identities=14% Similarity=0.051 Sum_probs=49.8
Q ss_pred EEeecCcHHHHH-HHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEcceeEecC
Q 006577 458 LLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSN 536 (640)
Q Consensus 458 ILT~g~SstV~~-vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGADaIlaN 536 (640)
||..|-++.+=. +++.+.++| .+|+++.-++..... +. ..+ +..+.+......+.++|.||--|-....+
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~-~~----~~~--~~~~~~~~~~~~~~~~D~Vvh~a~~~~~~ 71 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDG--HEVTILTRSPPAGAN-TK----WEG--YKPWAPLAESEALEGADAVINLAGEPIAD 71 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcC--CEEEEEeCCCCCCCc-cc----cee--eecccccchhhhcCCCCEEEECCCCCccc
Confidence 466677766544 334455555 567766544432211 00 011 11111222334556789888766443323
Q ss_pred CCe----------ecccchHHHHHHHhhCCCc
Q 006577 537 GTV----------CSRVGTACVAMVAYGFHIP 558 (640)
Q Consensus 537 G~V----------vNKiGT~~lAlaAk~~~VP 558 (640)
++. .|-.||..+.-+|+.+++.
T Consensus 72 ~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~ 103 (292)
T TIGR01777 72 KRWTEERKQEIRDSRIDTTRALVEAIAAAEQK 103 (292)
T ss_pred ccCCHHHHHHHHhcccHHHHHHHHHHHhcCCC
Confidence 322 3778899999999999873
No 350
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=25.38 E-value=4.9e+02 Score=31.32 Aligned_cols=99 Identities=10% Similarity=0.119 Sum_probs=69.2
Q ss_pred CCCEEEeecCcHHHHHHHHHHHHcC-CeeEEEEcCCCCCchHH-----HHHHHHHhCCCceEEEe---chHHHHHhhhcc
Q 006577 454 DGDVLLTYGSSSAVEMILQHAHELG-KQFRVVIVDSRPKHEGK-----LLLRRLVRKGLSCTYTH---INAISYIIHEVT 524 (640)
Q Consensus 454 dgdvILT~g~SstV~~vL~~A~e~G-k~f~ViV~ESRP~~eG~-----~La~eL~~~GI~vTlI~---DsAv~~iM~~Vd 524 (640)
...+|+..|-.+....++..+.+.| .+|+.++.|.-+.+-++ ++++. .+.+|++..|. +..+-.+++..|
T Consensus 128 R~akVlVlG~Gg~~s~lv~sL~~sG~~~I~~vd~D~v~SNlnRIgEl~e~A~~-~n~~v~v~~i~~~~~~dl~ev~~~~D 206 (637)
T TIGR03693 128 RNAKILAAGSGDFLTKLVRSLIDSGFPRFHAIVTDAEEHALDRIHELAEIAEE-TDDALLVQEIDFAEDQHLHEAFEPAD 206 (637)
T ss_pred hcccEEEEecCchHHHHHHHHHhcCCCcEEEEeccccchhhhHHHHHHHHHHH-hCCCCceEeccCCcchhHHHhhcCCc
Confidence 4678999999998888888888888 56888888877765552 23333 23478888877 556667777889
Q ss_pred EEEEcceeEecCCCeecccchHHHHHHHhhCCCcEE
Q 006577 525 RVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVL 560 (640)
Q Consensus 525 kVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVy 560 (640)
.||.-+| |+ +.-....+--.|...|.|++
T Consensus 207 iVi~vsD----dy---~~~~Lr~lN~acvkegk~~I 235 (637)
T TIGR03693 207 WVLYVSD----NG---DIDDLHALHAFCKEEGKGFI 235 (637)
T ss_pred EEEEECC----CC---ChHHHHHHHHHHHHcCCCeE
Confidence 9987765 22 22245666667778884444
No 351
>PRK06767 methionine gamma-lyase; Provisional
Probab=25.36 E-value=7.5e+02 Score=27.06 Aligned_cols=98 Identities=13% Similarity=0.087 Sum_probs=46.9
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHH-HHHHH-HHhCCCceEEEec---hHHHHHhh-hccEEEEc
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLLRR-LVRKGLSCTYTHI---NAISYIIH-EVTRVFLG 529 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~-~La~e-L~~~GI~vTlI~D---sAv~~iM~-~VdkVlvG 529 (640)
+.|++-+-+..+..+|....+.| -+|++.+ |.+.+. .+... +...|+++.++.. ..+-..+. +..+|++-
T Consensus 78 ~al~~~sG~~Ai~~~l~al~~~G--d~Vv~~~--~~y~~~~~~~~~~~~~~gi~~~~~~~~d~~~l~~~i~~~tklV~le 153 (386)
T PRK06767 78 EALAFGSGMAAISATLIGFLKAG--DHIICSN--GLYGCTYGFLEVLEEKFMITHSFCDMETEADIENKIRPNTKLIFVE 153 (386)
T ss_pred cEEEECCHHHHHHHHHHHHhCCC--CEEEEcC--CcHHHHHHHHHHHHhhcCeEEEEeCCCCHHHHHHhhCcCceEEEEe
Confidence 44554333333444444433334 3555543 444332 22322 3446888776632 22322232 34444442
Q ss_pred ceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 530 ADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
.---..|.+.. -..|+-+|++++++|+|
T Consensus 154 -sp~NptG~v~d---l~~I~~la~~~g~~viv 181 (386)
T PRK06767 154 -TPINPTMKLID---LKQVIRVAKRNGLLVIV 181 (386)
T ss_pred -CCCCCCceecC---HHHHHHHHHHcCCEEEE
Confidence 12223444443 24677788999988776
No 352
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=25.32 E-value=1.3e+02 Score=26.74 Aligned_cols=39 Identities=21% Similarity=0.063 Sum_probs=30.0
Q ss_pred chHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEcc
Q 006577 492 HEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA 530 (640)
Q Consensus 492 ~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGA 530 (640)
.+-.++++.+.+.|+++..|+++.-..+-+.+|.+|.-.
T Consensus 67 ~~~~~~~~~ak~~g~~vi~iT~~~~~~l~~~ad~~l~~~ 105 (131)
T PF01380_consen 67 RELIELLRFAKERGAPVILITSNSESPLARLADIVLYIP 105 (131)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSTTSHHHHHSSEEEEEE
T ss_pred hhhhhhhHHHHhcCCeEEEEeCCCCCchhhhCCEEEEec
Confidence 344455677788889999999888888888888887654
No 353
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=25.29 E-value=5.9e+02 Score=27.36 Aligned_cols=51 Identities=14% Similarity=0.046 Sum_probs=29.8
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEe
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH 512 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~ 512 (640)
.+++|.|.+..+..++....+.|. +|+|. .|.+.+.... +...|..+..+.
T Consensus 94 ~I~it~Gs~~al~~~~~~l~~~gd--~Vlv~--~P~y~~~~~~--~~~~g~~~~~v~ 144 (388)
T PRK07366 94 EVLPLIGSQEGTAHLPLAVLNPGD--FALLL--DPGYPSHAGG--VYLAGGQIYPMP 144 (388)
T ss_pred eEEECCCcHHHHHHHHHHhCCCCC--EEEEc--CCCCcchHHH--HHhcCCEEEEEE
Confidence 477788888776666555444443 44443 3776665433 334677776654
No 354
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=25.28 E-value=3.8e+02 Score=29.14 Aligned_cols=76 Identities=20% Similarity=0.292 Sum_probs=46.1
Q ss_pred cCCeeEEEEcCCCCCchHHHHHHHHHhCCCce--------------EEEec--hHHHHHhhhccEEEEcceeEecCCCee
Q 006577 477 LGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSC--------------TYTHI--NAISYIIHEVTRVFLGASSVLSNGTVC 540 (640)
Q Consensus 477 ~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~v--------------TlI~D--sAv~~iM~~VdkVlvGADaIlaNG~Vv 540 (640)
...+++++++-..|.. ..++...+.+.|+.. .++.| .-+..++..+|.+|+|..- ...|
T Consensus 259 ~~~~~~liivG~g~~r-~~~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l~~~~~el~~~y~~aDi~~v~~S~-~e~~--- 333 (425)
T PRK05749 259 QFPNLLLILVPRHPER-FKEVEELLKKAGLSYVRRSQGEPPSADTDVLLGDTMGELGLLYAIADIAFVGGSL-VKRG--- 333 (425)
T ss_pred hCCCcEEEEcCCChhh-HHHHHHHHHhCCCcEEEccCCCCCCCCCcEEEEecHHHHHHHHHhCCEEEECCCc-CCCC---
Confidence 3456787777554432 234556667778753 22333 3577888899998886542 2222
Q ss_pred cccchHHHHHHHhhCCCcEEEe
Q 006577 541 SRVGTACVAMVAYGFHIPVLVC 562 (640)
Q Consensus 541 NKiGT~~lAlaAk~~~VPVyV~ 562 (640)
|.. .+=|-.+|+||++.
T Consensus 334 ---g~~--~lEAma~G~PVI~g 350 (425)
T PRK05749 334 ---GHN--PLEPAAFGVPVISG 350 (425)
T ss_pred ---CCC--HHHHHHhCCCEEEC
Confidence 211 35566789999974
No 355
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=25.24 E-value=6.2e+02 Score=25.14 Aligned_cols=95 Identities=15% Similarity=0.132 Sum_probs=52.7
Q ss_pred CEEEeecCcH------HHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCc--eEEEe-chHHHHHhhhccEE
Q 006577 456 DVLLTYGSSS------AVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLS--CTYTH-INAISYIIHEVTRV 526 (640)
Q Consensus 456 dvILT~g~Ss------tV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~--vTlI~-DsAv~~iM~~VdkV 526 (640)
-+|++.|+-. .+...+....+.+.+++++++-..+..+-...... .+.|+. +.++. ..-+..+|..+|.+
T Consensus 194 ~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~-~~~~~~~~v~~~g~~~~~~~~~~~adi~ 272 (365)
T cd03807 194 FLIGIVARLHPQKDHATLLRAAALLLKKFPNARLLLVGDGPDRANLELLAL-KELGLEDKVILLGERSDVPALLNALDVF 272 (365)
T ss_pred eEEEEecccchhcCHHHHHHHHHHHHHhCCCeEEEEecCCcchhHHHHHHH-HhcCCCceEEEccccccHHHHHHhCCEE
Confidence 3566666532 23444444545566788888865544332222211 244543 33332 34467888999999
Q ss_pred EEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 527 FLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 527 lvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
|+.... .| .-...+=|-.+|+|+++
T Consensus 273 v~ps~~---e~-------~~~~~~Ea~a~g~PvI~ 297 (365)
T cd03807 273 VLSSLS---EG-------FPNVLLEAMACGLPVVA 297 (365)
T ss_pred EeCCcc---cc-------CCcHHHHHHhcCCCEEE
Confidence 876543 22 12234456667999987
No 356
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=25.20 E-value=8.4e+02 Score=25.90 Aligned_cols=96 Identities=18% Similarity=0.176 Sum_probs=45.4
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEech----------HHHHHhh----
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN----------AISYIIH---- 521 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds----------Av~~iM~---- 521 (640)
.+++|.|.+..+..+|....+.| -+|++. ++.+-+.. ..+...|+.+.++... .+...+.
T Consensus 61 ~i~~~~g~t~al~~~l~~~~~~g--d~Vl~~--~~~~~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~ 134 (361)
T cd06452 61 EARVTPGAREGKFAVMHSLCEKG--DWVVVD--GLAHYTSY--VAAERAGLNVREVPNTGHPEYHITPEGYAEVIEEVKD 134 (361)
T ss_pred eEEEeCCHHHHHHHHHHHhcCCC--CEEEEc--CCcchHHH--HHHHhcCCEEEEEecCCCCCcccCHHHHHHHHHHHhh
Confidence 45666555555555554443333 244443 23222221 2355567777766411 1222222
Q ss_pred ----hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 522 ----EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 522 ----~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
++..|++. +.=...|.+ .. -..++-+|+.++++|+|
T Consensus 135 ~~~~~~~lv~l~-~p~n~tG~~-~~--~~~i~~~~~~~~~~viv 174 (361)
T cd06452 135 EFGKPPALALLT-HVDGNYGNL-HD--AKKIAKVCHEYGVPLLL 174 (361)
T ss_pred ccCCCceEEEEE-CCCCCCeee-cc--HHHHHHHHHHcCCeEEE
Confidence 34566653 111112322 11 23566678899998876
No 357
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=25.19 E-value=1.8e+02 Score=31.27 Aligned_cols=32 Identities=9% Similarity=0.219 Sum_probs=23.2
Q ss_pred cceeEecCCCeecccchHHHHHHHhhCCCcEEEecccc
Q 006577 529 GASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAY 566 (640)
Q Consensus 529 GADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~aety 566 (640)
+.|.|..|. .++...++|..+|||++.+++.+
T Consensus 92 ~pDlVi~d~------~~~~~~~~A~~~giP~v~~~~~~ 123 (392)
T TIGR01426 92 RPDLIVYDI------ASWTGRLLARKWDVPVISSFPTF 123 (392)
T ss_pred CCCEEEECC------ccHHHHHHHHHhCCCEEEEehhh
Confidence 567777665 23456778999999999877654
No 358
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=25.16 E-value=4.4e+02 Score=29.01 Aligned_cols=91 Identities=19% Similarity=0.226 Sum_probs=56.0
Q ss_pred CCEEEeecCcH---HHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEE-EechHHHHHhhhccEEEEcc
Q 006577 455 GDVLLTYGSSS---AVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTY-THINAISYIIHEVTRVFLGA 530 (640)
Q Consensus 455 gdvILT~g~Ss---tV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTl-I~DsAv~~iM~~VdkVlvGA 530 (640)
.++..|.|-|- +...++..+.....+++|++--+.|.+.-.+ ...+.-=+..+ +--+-++-+|+++|+.|..|
T Consensus 159 r~ilI~lGGsDpk~lt~kvl~~L~~~~~nl~iV~gs~~p~l~~l~---k~~~~~~~i~~~~~~~dma~LMke~d~aI~Aa 235 (318)
T COG3980 159 RDILITLGGSDPKNLTLKVLAELEQKNVNLHIVVGSSNPTLKNLR---KRAEKYPNINLYIDTNDMAELMKEADLAISAA 235 (318)
T ss_pred heEEEEccCCChhhhHHHHHHHhhccCeeEEEEecCCCcchhHHH---HHHhhCCCeeeEecchhHHHHHHhcchheecc
Confidence 46788888873 5667777776656789999887777765322 22222222333 33344888999999987654
Q ss_pred eeEecCCCeecccchHHHHHHHhhCCCcEEEec
Q 006577 531 SSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (640)
Q Consensus 531 DaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~a 563 (640)
|.. +|-.+ -.++|++|+|
T Consensus 236 ------Gst-----lyEa~----~lgvP~l~l~ 253 (318)
T COG3980 236 ------GST-----LYEAL----LLGVPSLVLP 253 (318)
T ss_pred ------chH-----HHHHH----HhcCCceEEe
Confidence 322 22323 3589977654
No 359
>PF02550 AcetylCoA_hydro: Acetyl-CoA hydrolase/transferase N-terminal domain; InterPro: IPR003702 This family contains several enzymes which take part in pathways involving acetyl-CoA. Acetyl-CoA hydrolase 3.1.2.1 from EC from yeast catalyses the formation of acetate from acetyl-CoA, CoA transferase (CAT1) 2.8.3 from EC produces succinyl-CoA, and acetate-CoA transferase 2.8.3.8 from EC utilises acyl-CoA and acetate to form acetyl-CoA.; GO: 0003824 catalytic activity, 0006084 acetyl-CoA metabolic process; PDB: 2NVV_C 2G39_A 3D3U_A 3S8D_B 3QLI_B 3QLK_B 3GK7_B 3QDQ_A 3EH7_A 2OAS_A ....
Probab=25.13 E-value=2.9e+02 Score=27.49 Aligned_cols=109 Identities=16% Similarity=0.185 Sum_probs=61.2
Q ss_pred HHHHHHhccCCCEEEeec--CcHH---HHHHH-HHHHHcC-----CeeEEEEcC---CC-----------------CCch
Q 006577 445 VKHAVTKIRDGDVLLTYG--SSSA---VEMIL-QHAHELG-----KQFRVVIVD---SR-----------------PKHE 493 (640)
Q Consensus 445 a~~a~~~I~dgdvILT~g--~Sst---V~~vL-~~A~e~G-----k~f~ViV~E---SR-----------------P~~e 493 (640)
++.|+.+|++|+.|.+-+ ..+. +...| +++.+.. ..+.++... .. +++-
T Consensus 12 a~eA~~~Ik~g~~I~~~~~~~~~~p~~l~~aL~~r~~e~~~~~~~~~~~l~~~~~l~~~P~~~~~~~~~~~~~~~~s~f~ 91 (198)
T PF02550_consen 12 AEEAASLIKSGDWIAFGGFTFAGEPKALPEALAQRAEELENVKVYSFISLFHGASLSADPEDPYLAPESAFHFRHNSFFV 91 (198)
T ss_dssp HHHHHTTS-TT-EEEE-SCTGGGS-HHHHHHHHHHHHGHCSEECTCSEEEEEECSSBTTHHHCCHSGCCTCCEEEEESS-
T ss_pred HHHHHHhCCCCCEEEeCCcccccCHHHHHHHHHHHHHHHhccccceeeccccceeecccccccccchhhhhhcccCcccC
Confidence 456889999999999877 3332 33333 3443321 235555544 12 2233
Q ss_pred HHHHHHHHHhCC-CceEEEechHHHHHhh----hccEEEEcceeEecCCCeecccchHHHHHHHhh
Q 006577 494 GKLLLRRLVRKG-LSCTYTHINAISYIIH----EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYG 554 (640)
Q Consensus 494 G~~La~eL~~~G-I~vTlI~DsAv~~iM~----~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~ 554 (640)
|. ..+.+.+.| ++.+=+..+.+..++. .+|.+++-+.-+-.+|.+.--+|....-.+++.
T Consensus 92 ~~-~~R~~~~~G~~~y~p~~ls~~p~~~~~~~~~~Dvaii~vSp~De~Gy~slG~s~~~~~~~ie~ 156 (198)
T PF02550_consen 92 GP-NERKAINQGRVDYVPIHLSEIPRLFRRGFIPIDVAIIQVSPMDEHGYFSLGTSVDYTKAAIEQ 156 (198)
T ss_dssp -H-HHHHHHHTTSSEES--BGGGHHHHHHTTSSH-SEEEEEECEE-TTSEEECTTBHBTHHHHHHH
T ss_pred CH-HHHHHHHCCCeEEECccHHHhHHHHHcCCCCCCEEEEEecCcCCCCCEeecHHHHhHHHHHhc
Confidence 33 346666666 4555567888887776 389999999999999988776664333333443
No 360
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=25.13 E-value=3.3e+02 Score=30.27 Aligned_cols=54 Identities=22% Similarity=0.282 Sum_probs=29.6
Q ss_pred ccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEE
Q 006577 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT 511 (640)
Q Consensus 452 I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI 511 (640)
+...++|+|.|.+..+..++....+.|. +|++. +|.+........ ..|+.+.++
T Consensus 115 ~~~~~v~it~G~~~al~l~~~~l~~~Gd--~Vlv~--~P~y~~y~~~~~--~~g~~~~~~ 168 (430)
T PLN00145 115 LSTDDIYLTAGCAQAIEIIMSVLAQPGA--NILLP--RPGYPLYEARAV--FSGLEVRHF 168 (430)
T ss_pred CChhhEEEeCCHHHHHHHHHHHhcCCCC--EEEEc--CCCCccHHHHHH--HcCCEEEEe
Confidence 3445788888888777666665544343 45544 465554333222 245555544
No 361
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=25.12 E-value=3.3e+02 Score=26.44 Aligned_cols=103 Identities=17% Similarity=0.226 Sum_probs=61.8
Q ss_pred CEEEeecCc--------HHHHHHHHHHHHcCCeeEEEEcCCCCC------------chHHHHHHHHHhCCCceEEEech-
Q 006577 456 DVLLTYGSS--------SAVEMILQHAHELGKQFRVVIVDSRPK------------HEGKLLLRRLVRKGLSCTYTHIN- 514 (640)
Q Consensus 456 dvILT~g~S--------stV~~vL~~A~e~Gk~f~ViV~ESRP~------------~eG~~La~eL~~~GI~vTlI~Ds- 514 (640)
..++|+|+= ..+..++..|.+.+..--|+.-+..|. ..-.+=.+.|.+.||+..++.|=
T Consensus 6 ~~~v~iG~FDGvH~GHq~Li~~~~~~a~~~~~~~~v~tF~~~P~~~~~~~~~~~~l~s~~ek~~~l~~~Gvd~~~~~~F~ 85 (157)
T PF06574_consen 6 KSVVAIGNFDGVHLGHQKLIKKAVEIAKEKGLKSVVLTFDPHPKEVLNPDKPPKLLTSLEEKLELLESLGVDYVIVIPFT 85 (157)
T ss_dssp -EEEEES--TT--HHHHHHHHHHHHHHHHCT-EEEEEEESS-CHHHHSCTCCGGBSS-HHHHHHHHHHTTESEEEEE-CC
T ss_pred CcEEEEeCCCCccHHHHHHHHHHhhhhhhcccceEEEEcccCHHHHhcCCCcccCCCCHHHHHHHHHHcCCCEEEEecch
Confidence 467777653 235556666666666666777776662 23344457788899998877642
Q ss_pred -HH---------HHHhh---hccEEEEcceeEecCCCeecccch-HHHHHHHhhCCCcEEEe
Q 006577 515 -AI---------SYIIH---EVTRVFLGASSVLSNGTVCSRVGT-ACVAMVAYGFHIPVLVC 562 (640)
Q Consensus 515 -Av---------~~iM~---~VdkVlvGADaIlaNG~VvNKiGT-~~lAlaAk~~~VPVyV~ 562 (640)
.+ -.++. ++..+++|.|-=+-. ++.|+ ..+.-.++.+++.|+++
T Consensus 86 ~~~~~ls~~~Fi~~iL~~~l~~~~ivvG~DfrFG~----~~~G~~~~L~~~~~~~g~~v~~v 143 (157)
T PF06574_consen 86 EEFANLSPEDFIEKILKEKLNVKHIVVGEDFRFGK----NRSGDVELLKELGKEYGFEVEVV 143 (157)
T ss_dssp CHHCCS-HHHHHHHHCCCHCTEEEEEEETT-EESG----GGEEEHHHHHHCTTTT-SEEEEE
T ss_pred HHHHcCCHHHHHHHHHHhcCCccEEEEccCccCCC----CCCCCHHHHHHhcccCceEEEEE
Confidence 21 12222 688999999988855 44454 44555778889999986
No 362
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=24.98 E-value=4.7e+02 Score=26.38 Aligned_cols=99 Identities=19% Similarity=0.178 Sum_probs=55.3
Q ss_pred CCCEEEeecCcH------HHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHH----HHHHhCCC--ceEEE----echHHH
Q 006577 454 DGDVLLTYGSSS------AVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL----RRLVRKGL--SCTYT----HINAIS 517 (640)
Q Consensus 454 dgdvILT~g~Ss------tV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La----~eL~~~GI--~vTlI----~DsAv~ 517 (640)
+.-+|+..|+-. .+..++....+++.+++++++-..+...- ... ..+.+.|+ .++++ .+.-+.
T Consensus 184 ~~~~i~~~G~~~~~K~~~~ll~a~~~~~~~~~~~~l~i~G~~~~~~~-~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~ 262 (366)
T cd03822 184 GRPVLLTFGLLRPYKGLELLLEALPLLVAKHPDVRLLVAGETHPDLE-RYRGEAYALAERLGLADRVIFINRYLPDEELP 262 (366)
T ss_pred CCeEEEEEeeccCCCCHHHHHHHHHHHHhhCCCeEEEEeccCccchh-hhhhhhHhHHHhcCCCCcEEEecCcCCHHHHH
Confidence 345677766432 23444555555667788887765432211 111 11344454 45543 357788
Q ss_pred HHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 518 YIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 518 ~iM~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
.+|+.+|.+++-... .+ -|.....+=|-.+|+||++
T Consensus 263 ~~~~~ad~~v~ps~~--e~------~~~~~~~~Ea~a~G~PvI~ 298 (366)
T cd03822 263 ELFSAADVVVLPYRS--AD------QTQSGVLAYAIGFGKPVIS 298 (366)
T ss_pred HHHhhcCEEEecccc--cc------cccchHHHHHHHcCCCEEe
Confidence 999999999875321 11 1222334456778999987
No 363
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=24.95 E-value=2.8e+02 Score=25.99 Aligned_cols=98 Identities=11% Similarity=0.114 Sum_probs=57.4
Q ss_pred EEeecCcHHH-HHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEe--c-hHHHHHhhhccEEEEcceeE
Q 006577 458 LLTYGSSSAV-EMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH--I-NAISYIIHEVTRVFLGASSV 533 (640)
Q Consensus 458 ILT~g~SstV-~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~--D-sAv~~iM~~VdkVlvGADaI 533 (640)
|+..|-++.+ ..+++.+.++| ++|+++--+|.. +-. ..++.+.... | .++...+..+|.||.-+-.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~--~~V~~~~R~~~~----~~~---~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~- 70 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG--HEVTALVRSPSK----AED---SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGP- 70 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT--SEEEEEESSGGG----HHH---CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHS-
T ss_pred eEEECCCChHHHHHHHHHHHCC--CEEEEEecCchh----ccc---ccccccceeeehhhhhhhhhhhhcchhhhhhhh-
Confidence 6777776655 44666677777 566655444431 111 4555544332 2 3566677788888876521
Q ss_pred ecCCCeecccchHHHHHHHhhCCCcEEEeccccccc
Q 006577 534 LSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFH 569 (640)
Q Consensus 534 laNG~VvNKiGT~~lAlaAk~~~VPVyV~aetyKf~ 569 (640)
+.. ..-.+-.+.-+++.++++-+|+..+....
T Consensus 71 --~~~--~~~~~~~~~~a~~~~~~~~~v~~s~~~~~ 102 (183)
T PF13460_consen 71 --PPK--DVDAAKNIIEAAKKAGVKRVVYLSSAGVY 102 (183)
T ss_dssp --TTT--HHHHHHHHHHHHHHTTSSEEEEEEETTGT
T ss_pred --hcc--cccccccccccccccccccceeeeccccC
Confidence 111 24555666667888999988876655443
No 364
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=24.91 E-value=37 Score=35.65 Aligned_cols=71 Identities=15% Similarity=0.185 Sum_probs=36.0
Q ss_pred CchHHHHHHHHHhCCCceEEEe----chHHHHHhhhccEE-EEcceeEec-CCCeecccchHHHHHHHhhCCCcEEEecc
Q 006577 491 KHEGKLLLRRLVRKGLSCTYTH----INAISYIIHEVTRV-FLGASSVLS-NGTVCSRVGTACVAMVAYGFHIPVLVCCE 564 (640)
Q Consensus 491 ~~eG~~La~eL~~~GI~vTlI~----DsAv~~iM~~VdkV-lvGADaIla-NG~VvNKiGT~~lAlaAk~~~VPVyV~ae 564 (640)
..-|.++...|.+.|+++.++. +.....+++-++.+ -.++|.|+. .|+.+|.+.= .+|.+.++||+++.-
T Consensus 32 ~~~g~~v~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vGgG~i~D~~K----~~A~~~~~p~isVPT 107 (250)
T PF13685_consen 32 KAAGEKVEESLKSAGIEVAVIEEFVGDADEDEVEKLVEALRPKDADLIIGVGGGTIIDIAK----YAAFELGIPFISVPT 107 (250)
T ss_dssp HHHHHHHHHHHHTTT-EEEEEE-EE---BHHHHHHHHTTS--TT--EEEEEESHHHHHHHH----HHHHHHT--EEEEES
T ss_pred HHHHHHHHHHHHHcCCeEEEEecCCCCCCHHHHHHHHHHhcccCCCEEEEeCCcHHHHHHH----HHHHhcCCCEEEecc
Confidence 3457777788888888888654 33333333322222 134444443 4455555444 457778999998744
Q ss_pred c
Q 006577 565 A 565 (640)
Q Consensus 565 t 565 (640)
.
T Consensus 108 a 108 (250)
T PF13685_consen 108 A 108 (250)
T ss_dssp -
T ss_pred c
Confidence 3
No 365
>PRK15456 universal stress protein UspG; Provisional
Probab=24.91 E-value=2.1e+02 Score=26.09 Aligned_cols=37 Identities=27% Similarity=0.344 Sum_probs=25.4
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEe
Q 006577 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (640)
Q Consensus 522 ~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~ 562 (640)
++|+|++|.+.- ..+.. -+|+-.-. +.++-++||+|+
T Consensus 105 ~~DLIVmG~~g~-~~~~~--llGS~a~~-v~~~a~~pVLvV 141 (142)
T PRK15456 105 GADVVVIGSRNP-SISTH--LLGSNASS-VIRHANLPVLVV 141 (142)
T ss_pred CCCEEEEcCCCC-Cccce--ecCccHHH-HHHcCCCCEEEe
Confidence 799999999862 22222 25765444 467788999986
No 366
>PLN00203 glutamyl-tRNA reductase
Probab=24.82 E-value=4e+02 Score=31.10 Aligned_cols=71 Identities=17% Similarity=0.285 Sum_probs=45.3
Q ss_pred CCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEc
Q 006577 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLG 529 (640)
Q Consensus 455 gdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvG 529 (640)
+..|+.+|.......++..+...|. -+|+|++ |-......|+.++. |+.+.++.......++.++|.||..
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~G~-~~V~V~n-Rs~era~~La~~~~--g~~i~~~~~~dl~~al~~aDVVIsA 336 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSKGC-TKMVVVN-RSEERVAALREEFP--DVEIIYKPLDEMLACAAEADVVFTS 336 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhCCC-CeEEEEe-CCHHHHHHHHHHhC--CCceEeecHhhHHHHHhcCCEEEEc
Confidence 6789999998877777777776652 2466653 33222334444442 5556665545566677899998875
No 367
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=24.77 E-value=3.3e+02 Score=26.37 Aligned_cols=90 Identities=16% Similarity=0.140 Sum_probs=51.6
Q ss_pred CCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEcceeE
Q 006577 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSV 533 (640)
Q Consensus 454 dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGADaI 533 (640)
.|..||..|......+-++...+.|-.++|| + |.. ..+|.+.+ .++++...--..-+..+|.||...|-
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VI---s-p~~-----~~~l~~l~-~i~~~~~~~~~~dl~~a~lViaaT~d- 80 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVV---S-PEI-----CKEMKELP-YITWKQKTFSNDDIKDAHLIYAATNQ- 80 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEE---c-Ccc-----CHHHHhcc-CcEEEecccChhcCCCceEEEECCCC-
Confidence 5789999999999888887777777766666 2 332 22333322 22232221112224456666654332
Q ss_pred ecCCCeecccchHHHHHHHhhCCCcEEEec
Q 006577 534 LSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (640)
Q Consensus 534 laNG~VvNKiGT~~lAlaAk~~~VPVyV~a 563 (640)
.-+| ..++..|+.+ ++|.++.
T Consensus 81 ----~e~N----~~i~~~a~~~-~~vn~~d 101 (157)
T PRK06719 81 ----HAVN----MMVKQAAHDF-QWVNVVS 101 (157)
T ss_pred ----HHHH----HHHHHHHHHC-CcEEECC
Confidence 2233 5677788874 6877653
No 368
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=24.74 E-value=9.6e+02 Score=26.41 Aligned_cols=98 Identities=13% Similarity=0.158 Sum_probs=52.2
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHH-HHHH-hCCCceEEEech-------HHHHHhh-hccE
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL-RRLV-RKGLSCTYTHIN-------AISYIIH-EVTR 525 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La-~eL~-~~GI~vTlI~Ds-------Av~~iM~-~Vdk 525 (640)
.+++|-|.+..++.++.... ..+.-+|++.+ +.+....-+ ..+. ..|+.+.++.-. .+-..+. ++..
T Consensus 131 ~v~~~~g~t~~~~~~~~a~~-~~~g~~Vlv~~--~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~d~~~l~~~i~~~t~~ 207 (447)
T PRK00451 131 NASMYDGATALAEAALMAVR-ITKRKKVLVSG--AVHPEYREVLKTYLKGQGIEVVEVPYEDGVTDLEALEAAVDDDTAA 207 (447)
T ss_pred eEEecCcHHHHHHHHHHHHH-hcCCCEEEEeC--ccCHHHHHHHHHHHHhCCcEEEEecCCCCCCCHHHHHHhcCCCeEE
Confidence 46677666665555554332 12334677754 444333333 3333 368888877532 1222222 4444
Q ss_pred EEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 526 VFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 526 VlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
|++.. . ...|.+ .. --.|+-+|+++++.|+|
T Consensus 208 v~l~~-p-n~tG~v-~~--l~~I~~~a~~~~~~~iv 238 (447)
T PRK00451 208 VVVQY-P-NFFGVI-ED--LEEIAEIAHAGGALFIV 238 (447)
T ss_pred EEEEC-C-CCCCee-CC--HHHHHHHHHHCCCEEEE
Confidence 54443 2 334443 33 34577899999999887
No 369
>PRK01362 putative translaldolase; Provisional
Probab=24.69 E-value=7.1e+02 Score=25.67 Aligned_cols=66 Identities=20% Similarity=0.245 Sum_probs=40.1
Q ss_pred cHHHHHHHHHHHH---cCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEcceeEec
Q 006577 464 SSAVEMILQHAHE---LGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLS 535 (640)
Q Consensus 464 SstV~~vL~~A~e---~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGADaIla 535 (640)
+...+.++.+|++ .+.++-|=|.=|. +|.+.++.|.+.||+|.....-++...+--+. .||+-|..
T Consensus 60 ~~d~~~m~~~a~~l~~~~~~i~iKIP~T~---~G~~a~~~L~~~Gi~v~~T~vfs~~Qa~~Aa~---aGa~yisp 128 (214)
T PRK01362 60 ALDAEGMIKEGRELAKIAPNVVVKIPMTP---EGLKAVKALSKEGIKTNVTLIFSANQALLAAK---AGATYVSP 128 (214)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEEeCCCH---HHHHHHHHHHHCCCceEEeeecCHHHHHHHHh---cCCcEEEe
Confidence 3445666666654 3444444344343 89888899999999998777655554443221 26655543
No 370
>PLN02509 cystathionine beta-lyase
Probab=24.61 E-value=8.4e+02 Score=27.95 Aligned_cols=81 Identities=20% Similarity=0.213 Sum_probs=42.8
Q ss_pred HHHHHHHHcCCeeEEEEcCCCCCchHH-HHH-HHHHhCCCceEEEechHHHHH---hh-hccEEEEcceeEecCCCeecc
Q 006577 469 MILQHAHELGKQFRVVIVDSRPKHEGK-LLL-RRLVRKGLSCTYTHINAISYI---IH-EVTRVFLGASSVLSNGTVCSR 542 (640)
Q Consensus 469 ~vL~~A~e~Gk~f~ViV~ESRP~~eG~-~La-~eL~~~GI~vTlI~DsAv~~i---M~-~VdkVlvGADaIlaNG~VvNK 542 (640)
..+..+.+.|. +|++ +.|.+.|. ++. ..+...|+.+.++.....-.+ +. +..+|++ . +..|.
T Consensus 162 ~~il~ll~~GD--~VI~--~~~~y~~t~~ll~~~l~~~G~~v~~vd~~d~e~l~~ai~~~TklV~l-e-------sPsNP 229 (464)
T PLN02509 162 SAVTHLIKNGE--EIVA--GDDVYGGSDRLLSQVVPRSGVVVKRVNTTNLDEVAAAIGPQTKLVWL-E-------SPTNP 229 (464)
T ss_pred HHHHHHhCCCC--EEEE--cCCchhhHHHHHHHHHHHCCeEEEEeCCCCHHHHHHhCCcCCeEEEE-E-------CCCCC
Confidence 33344444444 5555 45566664 344 446678998887643322222 22 2222322 1 23344
Q ss_pred cchH----HHHHHHhhCCCcEEE
Q 006577 543 VGTA----CVAMVAYGFHIPVLV 561 (640)
Q Consensus 543 iGT~----~lAlaAk~~~VPVyV 561 (640)
.|.. .++-+|++|+++++|
T Consensus 230 tG~i~Dl~~I~~lAk~~g~~lIV 252 (464)
T PLN02509 230 RQQISDIRKIAEMAHAQGALVLV 252 (464)
T ss_pred CCCHHHHHHHHHHHHHcCCEEEE
Confidence 4443 356678999998887
No 371
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=24.60 E-value=4.4e+02 Score=25.80 Aligned_cols=104 Identities=13% Similarity=0.062 Sum_probs=52.2
Q ss_pred CEEEeecCcHHHHH-HHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEe----c-hHHHHH-------hhh
Q 006577 456 DVLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH----I-NAISYI-------IHE 522 (640)
Q Consensus 456 dvILT~g~SstV~~-vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~----D-sAv~~i-------M~~ 522 (640)
.+||..|.++.+-. +.+...++| .+|+++..++ .....+..+|...+.++.++. | .++..+ +..
T Consensus 2 ~~vlItGa~g~lG~~l~~~l~~~g--~~v~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (255)
T TIGR01963 2 KTALVTGAASGIGLAIALALAAAG--ANVVVNDLGE-AGAEAAAKVATDAGGSVIYLVADVTKEDEIADMIAAAAAEFGG 78 (255)
T ss_pred CEEEEcCCcchHHHHHHHHHHHCC--CEEEEEeCCH-HHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence 35777777665543 334444445 4677775554 233344455555554443321 1 222222 234
Q ss_pred ccEEEEcceeEecCCCe-------------ecccchHHHHHHH----hhCCCcEEEec
Q 006577 523 VTRVFLGASSVLSNGTV-------------CSRVGTACVAMVA----YGFHIPVLVCC 563 (640)
Q Consensus 523 VdkVlvGADaIlaNG~V-------------vNKiGT~~lAlaA----k~~~VPVyV~a 563 (640)
+|.||..|-.. ..+.. .|-.|+..+.-.+ +..++..+|..
T Consensus 79 ~d~vi~~a~~~-~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~~v~~ 135 (255)
T TIGR01963 79 LDILVNNAGIQ-HVAPIEEFPPEDWDRIIAIMLTSAFHTIRAALPHMKKQGWGRIINI 135 (255)
T ss_pred CCEEEECCCCC-CCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEE
Confidence 68777766322 11111 3667777766555 44566555443
No 372
>PLN02242 methionine gamma-lyase
Probab=24.60 E-value=5.6e+02 Score=28.66 Aligned_cols=99 Identities=24% Similarity=0.213 Sum_probs=48.6
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHH-HHH-HHHHh-CCCceEEEec---hHHHHHhhh-ccEEEE
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLL-RRLVR-KGLSCTYTHI---NAISYIIHE-VTRVFL 528 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~-~La-~eL~~-~GI~vTlI~D---sAv~~iM~~-VdkVlv 528 (640)
..++|-+-+..+..+|....+.|. +|++.+ |.+.+. .+. ..+.. .|+.++++.. ..+-..+.. -+++|+
T Consensus 93 ~~l~~~sG~~Ai~~al~al~~~GD--~Vl~~~--~~Y~~~~~~~~~~~~~~~G~~~~~~d~~d~e~l~~~i~~~~tklV~ 168 (418)
T PLN02242 93 AAYCTASGMSAISSVLLQLCSSGG--HVVASN--TLYGGTHALLAHFLPRKCNITTTFVDITDLEAVKKAVVPGKTKVLY 168 (418)
T ss_pred eEEEEccHHHHHHHHHHHHhCCCC--EEEEcC--CcHHHHHHHHHHhhhhccCceEEEcCCCCHHHHHHhcCcCCCEEEE
Confidence 345554434444555554444443 455443 555444 333 23333 7888776642 233344432 133333
Q ss_pred cceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 529 GASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 529 GADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
-..---..|.++. --.|+-+|++|+++++|
T Consensus 169 lesp~NPtG~v~d---l~~I~~la~~~gi~liv 198 (418)
T PLN02242 169 FESISNPTLTVAD---IPELARIAHEKGVTVVV 198 (418)
T ss_pred EecCCCCCCcccC---HHHHHHHHHHhCCEEEE
Confidence 2222222344432 23566788999998876
No 373
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=24.55 E-value=2.6e+02 Score=31.75 Aligned_cols=71 Identities=17% Similarity=0.260 Sum_probs=54.6
Q ss_pred CCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEcce
Q 006577 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGAS 531 (640)
Q Consensus 454 dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGAD 531 (640)
.+.+||.+|.+.....+.++.++.|. +.+.+=.|-+--..+|+++|. ..++..+-+..++.++|.||.+..
T Consensus 177 ~~~~vlvIGAGem~~lva~~L~~~g~--~~i~IaNRT~erA~~La~~~~-----~~~~~l~el~~~l~~~DvVissTs 247 (414)
T COG0373 177 KDKKVLVIGAGEMGELVAKHLAEKGV--KKITIANRTLERAEELAKKLG-----AEAVALEELLEALAEADVVISSTS 247 (414)
T ss_pred ccCeEEEEcccHHHHHHHHHHHhCCC--CEEEEEcCCHHHHHHHHHHhC-----CeeecHHHHHHhhhhCCEEEEecC
Confidence 36789999999998888888887663 334444677777777777775 677888888888889999988743
No 374
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=24.48 E-value=3.2e+02 Score=29.88 Aligned_cols=63 Identities=17% Similarity=0.117 Sum_probs=42.9
Q ss_pred EEEeecCc-HHHHHHHHHHHHcCCeeEEEEcCCCCCchH--HHHHHHHHhCCCceEEEechHHHHH
Q 006577 457 VLLTYGSS-SAVEMILQHAHELGKQFRVVIVDSRPKHEG--KLLLRRLVRKGLSCTYTHINAISYI 519 (640)
Q Consensus 457 vILT~g~S-stV~~vL~~A~e~Gk~f~ViV~ESRP~~eG--~~La~eL~~~GI~vTlI~DsAv~~i 519 (640)
.|.|||+- ..+...+..|++.|....+.+..+.-.-.. .++++.+.+.|.++.+|+|+.-...
T Consensus 106 ri~~~~~e~~~~~~~i~~ak~~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~ 171 (337)
T PRK08195 106 RVATHCTEADVSEQHIGLARELGMDTVGFLMMSHMAPPEKLAEQAKLMESYGAQCVYVVDSAGALL 171 (337)
T ss_pred EEEEecchHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHhCCCCEEEeCCCCCCCC
Confidence 46676654 456778888888888777776666433222 3445778888999999999765433
No 375
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=24.40 E-value=1.8e+02 Score=31.68 Aligned_cols=176 Identities=15% Similarity=0.098 Sum_probs=95.3
Q ss_pred hhHHHHHHHHHHHHHHHHHccCCCCCccchHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHhcCCC-CCHHHHHH
Q 006577 345 CGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPIS-LSESEAKA 423 (640)
Q Consensus 345 ~Gsnaraiaml~Alk~vI~dy~~p~~~t~srdL~~~L~~~i~~L~~aRPtsvsm~NAIr~lk~~I~~l~~~-~~~~eaK~ 423 (640)
.|....++||+-+++-.---...| .+.+.+-...|+.+...|.-+....-+|..+++++++..++.+.. .-..+..
T Consensus 70 SGNTGI~LA~vaa~~Gy~~iivmP--~~~S~er~~~l~a~GAevi~t~~~~g~~~~a~~~a~el~~~~p~~~~~~~Qf~- 146 (300)
T COG0031 70 SGNTGIALAMVAAAKGYRLIIVMP--ETMSQERRKLLRALGAEVILTPGAPGNMKGAIERAKELAAEIPGYAVWLNQFE- 146 (300)
T ss_pred CChHHHHHHHHHHHcCCcEEEEeC--CCCCHHHHHHHHHcCCEEEEcCCCCCchHHHHHHHHHHHHhCCCceEchhhcC-
Confidence 344445666665555321111223 246777788888888777766654555999999988777665431 1010100
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCC--CCc---------
Q 006577 424 TLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSR--PKH--------- 492 (640)
Q Consensus 424 ~L~e~Id~fi~E~i~~A~~~Ia~~a~~~I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESR--P~~--------- 492 (640)
...+--.++ ......|.+.....+ .-.|.-.|..+++.++-+..+++...++++++|.. |.+
T Consensus 147 ---NpaN~~aH~--~tT~~EI~~~~~g~~--d~fVagvGTGGTitGvar~Lk~~~p~i~iv~vdP~~S~~~~~G~g~~~i 219 (300)
T COG0031 147 ---NPANPEAHY--ETTGPEIWQQTDGKV--DAFVAGVGTGGTITGVARYLKERNPNVRIVAVDPEGSVLLSGGEGPHKI 219 (300)
T ss_pred ---CCccHHHHH--hhhHHHHHHHhCCCC--CEEEEeCCcchhHHHHHHHHHhhCCCcEEEEECCCCCcccCCCCCCccc
Confidence 000000001 112223333333221 23567788889999998888888888999999843 333
Q ss_pred hH--HHHH-HHHHhCCCc-eEEEechHHHHHhh---hccEEEEcc
Q 006577 493 EG--KLLL-RRLVRKGLS-CTYTHINAISYIIH---EVTRVFLGA 530 (640)
Q Consensus 493 eG--~~La-~eL~~~GI~-vTlI~DsAv~~iM~---~VdkVlvGA 530 (640)
|| ..+. ..|...=|+ +..|.|..+...++ +-+-+++|.
T Consensus 220 ~GIG~~~ip~~~~~~~iD~v~~V~d~~A~~~~r~La~~eGilvG~ 264 (300)
T COG0031 220 EGIGAGFVPENLDLDLIDEVIRVSDEEAIATARRLAREEGLLVGI 264 (300)
T ss_pred CCCCCCcCCcccccccCceEEEECHHHHHHHHHHHHHHhCeeecc
Confidence 22 1122 122222233 45567776666666 456777775
No 376
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=24.36 E-value=3e+02 Score=27.02 Aligned_cols=76 Identities=22% Similarity=0.381 Sum_probs=44.6
Q ss_pred hccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHH-HHHHhCCC--ceEEEechHHHHHh---hhcc
Q 006577 451 KIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL-RRLVRKGL--SCTYTHINAISYII---HEVT 524 (640)
Q Consensus 451 ~I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La-~eL~~~GI--~vTlI~DsAv~~iM---~~Vd 524 (640)
-+..|++||-+|..+-...+ ..|...+..-+|+.+|-.|.. ..++ +.+...|+ +++++...+..++. ...|
T Consensus 37 ~~~~~~~vlDlG~GtG~~s~-~~a~~~~~~~~v~avD~~~~~--~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D 113 (198)
T PRK00377 37 RLRKGDMILDIGCGTGSVTV-EASLLVGETGKVYAVDKDEKA--INLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFD 113 (198)
T ss_pred CCCCcCEEEEeCCcCCHHHH-HHHHHhCCCCEEEEEECCHHH--HHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCC
Confidence 35678899998876532221 112223455689999998864 3344 34555664 57777655543322 2467
Q ss_pred EEEEc
Q 006577 525 RVFLG 529 (640)
Q Consensus 525 kVlvG 529 (640)
.||+|
T Consensus 114 ~V~~~ 118 (198)
T PRK00377 114 RIFIG 118 (198)
T ss_pred EEEEC
Confidence 77664
No 377
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=24.29 E-value=1.6e+02 Score=30.06 Aligned_cols=75 Identities=24% Similarity=0.327 Sum_probs=46.6
Q ss_pred ccCCCEEEeecCc-HHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHH-HHHHhCCC-ceEEEe-chHHHHHhh-hccEE
Q 006577 452 IRDGDVLLTYGSS-SAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL-RRLVRKGL-SCTYTH-INAISYIIH-EVTRV 526 (640)
Q Consensus 452 I~dgdvILT~g~S-stV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La-~eL~~~GI-~vTlI~-DsAv~~iM~-~VdkV 526 (640)
|+.|++||=.|.. +-.-.+|.... |+..+|+-+|-.|.+- ..+ +.|...|+ +++++. |...++--. ..|.+
T Consensus 70 l~pg~~VLeIGtGsGY~aAlla~lv--g~~g~Vv~vE~~~~l~--~~A~~~l~~~~~~nv~~~~gdg~~g~~~~apfD~I 145 (209)
T PF01135_consen 70 LKPGDRVLEIGTGSGYQAALLAHLV--GPVGRVVSVERDPELA--ERARRNLARLGIDNVEVVVGDGSEGWPEEAPFDRI 145 (209)
T ss_dssp C-TT-EEEEES-TTSHHHHHHHHHH--STTEEEEEEESBHHHH--HHHHHHHHHHTTHSEEEEES-GGGTTGGG-SEEEE
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhc--CccceEEEECccHHHH--HHHHHHHHHhccCceeEEEcchhhccccCCCcCEE
Confidence 7899999998874 44444554443 6777999999887542 233 67777888 577777 554444322 46777
Q ss_pred EEcc
Q 006577 527 FLGA 530 (640)
Q Consensus 527 lvGA 530 (640)
+++|
T Consensus 146 ~v~~ 149 (209)
T PF01135_consen 146 IVTA 149 (209)
T ss_dssp EESS
T ss_pred EEee
Confidence 7765
No 378
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=24.10 E-value=7.1e+02 Score=29.08 Aligned_cols=113 Identities=20% Similarity=0.314 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHHhcCCcccc-HHHHHHHHHHHHHhc--------------------CCCCCHHHHHHHHHHHHHHHH
Q 006577 375 RDLTAKISSYVSFLIDCRPLSVS-MGNAIRFLKSQIAKI--------------------PISLSESEAKATLHSDIERFI 433 (640)
Q Consensus 375 rdL~~~L~~~i~~L~~aRPtsvs-m~NAIr~lk~~I~~l--------------------~~~~~~~eaK~~L~e~Id~fi 433 (640)
.+|.+.|.-+-+....--|+|++ ++||.+.+-..++.- +...+.+|+.+...+.-+.|+
T Consensus 217 ~~ldeAl~~a~~~~~ag~p~SIgl~GNaaei~~~l~~r~~~pD~vtDQTsaHdp~~GY~P~G~s~ee~~~lr~~d~~~~~ 296 (561)
T COG2987 217 ETLDEALALAEEATAAGEPISIGLLGNAAEILPELLRRGIRPDLVTDQTSAHDPLNGYLPVGYTVEEADELREEDPDKYR 296 (561)
T ss_pred CCHHHHHHHHHHHHhcCCceEEEEeccHHHHHHHHHHcCCCCceecccccccCcccCcCCCcCCHHHHHHHHhhCHHHHH
Confidence 35666666666677777899986 799988777666541 112357888888888888775
Q ss_pred HHHHHHHHHHHHHHHH---HhccCCCEEEeecCcHH-----------------HHHHHHHHHHcCC-eeEEEEcCCCCC
Q 006577 434 NEKIILADRVIVKHAV---TKIRDGDVLLTYGSSSA-----------------VEMILQHAHELGK-QFRVVIVDSRPK 491 (640)
Q Consensus 434 ~E~i~~A~~~Ia~~a~---~~I~dgdvILT~g~Sst-----------------V~~vL~~A~e~Gk-~f~ViV~ESRP~ 491 (640)
+ .+...|..|.. .+=..|...+-|||+-- |...|+-++-.|+ .||=.++-..|.
T Consensus 297 ~----~a~~sm~~hv~Aml~~q~~G~~~fDYGNnirq~a~d~G~~~aF~fPgfVpayIrPLFc~G~GPFRW~aLSgdpe 371 (561)
T COG2987 297 K----LARASMARHVEAMLAFQDRGVPTFDYGNNIRQVAKDEGVENAFDFPGFVPAYIRPLFCEGIGPFRWVALSGDPE 371 (561)
T ss_pred H----HHHHHHHHHHHHHHHHHHcCCeeeecchHHHHHHHhccccccccCCcchHHhhhhhhhcCcCCeeEEEecCCHH
Confidence 3 46777777654 33356888888887621 5666666666665 377777766663
No 379
>TIGR00644 recJ single-stranded-DNA-specific exonuclease RecJ. All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair.
Probab=24.05 E-value=3.3e+02 Score=31.58 Aligned_cols=72 Identities=21% Similarity=0.329 Sum_probs=38.1
Q ss_pred HHHhccCCCEEEeecCc-----HHHHHHHHHHHHcCCeeEEEEcCCCCCchH--HHHHHHHHhCCCceEEEechHHHHH
Q 006577 448 AVTKIRDGDVLLTYGSS-----SAVEMILQHAHELGKQFRVVIVDSRPKHEG--KLLLRRLVRKGLSCTYTHINAISYI 519 (640)
Q Consensus 448 a~~~I~dgdvILT~g~S-----stV~~vL~~A~e~Gk~f~ViV~ESRP~~eG--~~La~eL~~~GI~vTlI~DsAv~~i 519 (640)
..+.|..++.|+.+|.- ++...+.....+.|+.+++++.+.-|..-| ......+...|.+..+++|++....
T Consensus 47 i~~~i~~~~~I~I~gh~D~DGi~S~~~L~~~L~~~g~~v~~~ip~r~~~~yg~~~~~i~~~~~~~~~LiI~vD~G~~~~ 125 (539)
T TIGR00644 47 IIEAIENNEKILIFGDYDVDGITSTAILVEFLKDLGVNVDYYIPNRITEGYGLSPEALREAIENGVSLIITVDNGISAH 125 (539)
T ss_pred HHHHHhcCCeEEEEEccCCCcHHHHHHHHHHHHHCCCceEEEeCCCCcccCCCCHHHHHHHHhcCCCEEEEeCCCcccH
Confidence 34566677776666532 111111122234588888888764443222 1223445556777777777766543
No 380
>PRK08506 replicative DNA helicase; Provisional
Probab=24.01 E-value=4.3e+02 Score=30.21 Aligned_cols=38 Identities=11% Similarity=0.150 Sum_probs=25.9
Q ss_pred cCCCEEEeec-----CcHHHHHHHHHHHHcCCeeEEEEcCCCC
Q 006577 453 RDGDVLLTYG-----SSSAVEMILQHAHELGKQFRVVIVDSRP 490 (640)
Q Consensus 453 ~dgdvILT~g-----~SstV~~vL~~A~e~Gk~f~ViV~ESRP 490 (640)
+.|+.|+.-+ .|..++.+..++.++|+..-+|-+|-.+
T Consensus 190 ~~G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~ 232 (472)
T PRK08506 190 NKGDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPA 232 (472)
T ss_pred CCCceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCH
Confidence 4567777644 4456788888887778777777777544
No 381
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=23.93 E-value=5.3e+02 Score=28.60 Aligned_cols=69 Identities=14% Similarity=0.145 Sum_probs=42.6
Q ss_pred CCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHh--CCCceEEEechHHHHHhhhccEEEEcc
Q 006577 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVR--KGLSCTYTHINAISYIIHEVTRVFLGA 530 (640)
Q Consensus 455 gdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~--~GI~vTlI~DsAv~~iM~~VdkVlvGA 530 (640)
+.+|+.+|..++=..+.+.+.++| .+|.+.|..+... ...+|.+ .||.+.+-... .......|.||+..
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g--~~v~~~d~~~~~~---~~~~l~~~~~gi~~~~g~~~--~~~~~~~d~vv~sp 75 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNG--AEVAAYDAELKPE---RVAQIGKMFDGLVFYTGRLK--DALDNGFDILALSP 75 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCCCch---hHHHHhhccCCcEEEeCCCC--HHHHhCCCEEEECC
Confidence 567888888766555555565555 5788888777642 2334654 47766543322 22446789988765
No 382
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=23.90 E-value=2.5e+02 Score=31.14 Aligned_cols=95 Identities=13% Similarity=0.095 Sum_probs=68.1
Q ss_pred CcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHH----HHHHHHh-C-CCceEEEechHH--HHHhhhccEEEEcceeEe
Q 006577 463 SSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKL----LLRRLVR-K-GLSCTYTHINAI--SYIIHEVTRVFLGASSVL 534 (640)
Q Consensus 463 ~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~----La~eL~~-~-GI~vTlI~DsAv--~~iM~~VdkVlvGADaIl 534 (640)
+-.++..+|..|.+.+..+-+-+.++.=.+-|.. +++.+.+ . +|||.+-+|-+- -.+++-++ .|-++|+
T Consensus 27 n~e~~~avi~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~v~~~ae~~~~VPVaLHLDHg~~~e~i~~Ai~---~GFtSVM 103 (347)
T PRK13399 27 NMEQILAIMEAAEATDSPVILQASRGARKYAGDAMLRHMVLAAAEMYPDIPICLHQDHGNSPATCQSAIR---SGFTSVM 103 (347)
T ss_pred CHHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhcCCCcEEEECCCCCCHHHHHHHHh---cCCCEEE
Confidence 4467888888887776665555555443444543 3355554 3 489999999873 44555455 5899999
Q ss_pred cCCCee-----------cccchHHHHHHHhhCCCcEE
Q 006577 535 SNGTVC-----------SRVGTACVAMVAYGFHIPVL 560 (640)
Q Consensus 535 aNG~Vv-----------NKiGT~~lAlaAk~~~VPVy 560 (640)
-||+-. |--=|-.+.-.||.+||.|=
T Consensus 104 iDgS~l~~~~~~~~~eeNI~~Trevve~Ah~~GvsVE 140 (347)
T PRK13399 104 MDGSLLADGKTPASYDYNVDVTRRVTEMAHAVGVSVE 140 (347)
T ss_pred EeCCCCCCCCCccCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 999988 77889999999999999876
No 383
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=23.86 E-value=2e+02 Score=26.10 Aligned_cols=107 Identities=19% Similarity=0.170 Sum_probs=60.6
Q ss_pred EEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHh-CCCceEEEechHHHHHhhhccEEEEcceeEec
Q 006577 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVR-KGLSCTYTHINAISYIIHEVTRVFLGASSVLS 535 (640)
Q Consensus 457 vILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~-~GI~vTlI~DsAv~~iM~~VdkVlvGADaIla 535 (640)
+|...|-++.+-.-|.+...+...+.+..+-++..-.|..+...... .++ ..+.....-...+.++|.||+..+.=
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Dvvf~a~~~~-- 77 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGF-EDLSVEDADPEELSDVDVVFLALPHG-- 77 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTT-EEEBEEETSGHHHTTESEEEE-SCHH--
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccc-cceeEeecchhHhhcCCEEEecCchh--
Confidence 36677877766554444444467787665555544667666644332 233 22323223334448999998874321
Q ss_pred CCCeecccchHHHHHHHhhCCCcEEEecccccccccccC
Q 006577 536 NGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQL 574 (640)
Q Consensus 536 NG~VvNKiGT~~lAlaAk~~~VPVyV~aetyKf~~~~~~ 574 (640)
-+..++-.+-..|+.|+=++..|.|++..++
T Consensus 78 --------~~~~~~~~~~~~g~~ViD~s~~~R~~~~~~~ 108 (121)
T PF01118_consen 78 --------ASKELAPKLLKAGIKVIDLSGDFRLDDDVPY 108 (121)
T ss_dssp --------HHHHHHHHHHHTTSEEEESSSTTTTSTTSEE
T ss_pred --------HHHHHHHHHhhCCcEEEeCCHHHhCCCCCCE
Confidence 1233334445678888888888888775443
No 384
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=23.80 E-value=1.2e+03 Score=27.09 Aligned_cols=94 Identities=17% Similarity=0.250 Sum_probs=58.4
Q ss_pred CCCEEEeecCcHHHHHHHHHHH-HcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechH-HHHHhhhccEEEEcce
Q 006577 454 DGDVLLTYGSSSAVEMILQHAH-ELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA-ISYIIHEVTRVFLGAS 531 (640)
Q Consensus 454 dgdvILT~g~SstV~~vL~~A~-e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsA-v~~iM~~VdkVlvGAD 531 (640)
.|..++.++-+..+.++-+-+. +.| +.|+++.+.+......+..+|...+-.+.++.|.. +...+.+ ...|
T Consensus 304 ~Gkrv~I~gd~~~a~~l~~~L~~ELG--m~vv~~g~~~~~~~~~~~~~~~~~~~~~~i~~D~~ei~~~I~~-----~~pd 376 (513)
T CHL00076 304 TGKKAVVFGDATHAASMTKILAREMG--IRVSCAGTYCKHDAEWFKEQVQGFCDEILITDDHTEVGDMIAR-----VEPS 376 (513)
T ss_pred CCCEEEEEcCchHHHHHHHHHHHhCC--CEEEEecCcccchhHHHHHHHHHhccCcEEecCHHHHHHHHHh-----cCCC
Confidence 4678899988887777665553 445 56778888777665555566666555566666643 2333333 2233
Q ss_pred eEecCCCeecccchHHHHHHHhhCCCcEEEec
Q 006577 532 SVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (640)
Q Consensus 532 aIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~a 563 (640)
-|+ |+..--.+|+..+||+++++
T Consensus 377 lii---------Gs~~er~ia~~lgiP~~~is 399 (513)
T CHL00076 377 AIF---------GTQMERHIGKRLDIPCGVIS 399 (513)
T ss_pred EEE---------ECchhhHHHHHhCCCEEEee
Confidence 333 22233345899999999876
No 385
>PRK11071 esterase YqiA; Provisional
Probab=23.71 E-value=5.5e+02 Score=25.18 Aligned_cols=83 Identities=17% Similarity=0.204 Sum_probs=48.1
Q ss_pred EEEeecCcHHHHH----HHHHH-HHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhh---ccEEEE
Q 006577 457 VLLTYGSSSAVEM----ILQHA-HELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHE---VTRVFL 528 (640)
Q Consensus 457 vILT~g~SstV~~----vL~~A-~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~---VdkVlv 528 (640)
+|+.||+.+.... .+... .+.+..++|++.|-+.. |..++..|. .++.. -+.+++
T Consensus 4 illlHGf~ss~~~~~~~~~~~~l~~~~~~~~v~~~dl~g~--~~~~~~~l~---------------~l~~~~~~~~~~lv 66 (190)
T PRK11071 4 LLYLHGFNSSPRSAKATLLKNWLAQHHPDIEMIVPQLPPY--PADAAELLE---------------SLVLEHGGDPLGLV 66 (190)
T ss_pred EEEECCCCCCcchHHHHHHHHHHHHhCCCCeEEeCCCCCC--HHHHHHHHH---------------HHHHHcCCCCeEEE
Confidence 6899997654321 23332 23466899999997754 333332221 12221 134444
Q ss_pred cceeEecCCCeecccchHHHHHHHhhCCCcEEEeccccc
Q 006577 529 GASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYK 567 (640)
Q Consensus 529 GADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~aetyK 567 (640)
| +..|.+....+|..++++++++++...
T Consensus 67 G-----------~S~Gg~~a~~~a~~~~~~~vl~~~~~~ 94 (190)
T PRK11071 67 G-----------SSLGGYYATWLSQCFMLPAVVVNPAVR 94 (190)
T ss_pred E-----------ECHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 4 456777777777777777777777654
No 386
>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type. Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.
Probab=23.65 E-value=9.2e+02 Score=25.78 Aligned_cols=102 Identities=14% Similarity=0.157 Sum_probs=50.3
Q ss_pred CCCEEEeecCcHHHHHHHHHHHH----cCCeeEEEEcCC-CCCchHHHHHHHHHhCCCceEEEech--------HHHHHh
Q 006577 454 DGDVLLTYGSSSAVEMILQHAHE----LGKQFRVVIVDS-RPKHEGKLLLRRLVRKGLSCTYTHIN--------AISYII 520 (640)
Q Consensus 454 dgdvILT~g~SstV~~vL~~A~e----~Gk~f~ViV~ES-RP~~eG~~La~eL~~~GI~vTlI~Ds--------Av~~iM 520 (640)
..++++|.|.+..+..+++.+.. ...+-+|++.+. .|-+.. ....+...|+++.++.-. .+...+
T Consensus 60 ~~~i~~t~g~teal~~~~~~~~~~~~~~~~~~~vi~~~~e~ps~~~--~~~~~~~~G~~v~~v~~~~~g~~d~~~l~~~i 137 (382)
T TIGR03403 60 LDDIIITSCATESNNWVLKGVYFDEILKGGKNHIITTEVEHPAVRA--TCAFLESLGVEVTYLPINEQGTITAEQVREAI 137 (382)
T ss_pred CCeEEEeCCHHHHHHHHHHHHHHhhcccCCCCEEEEcCCccHHHHH--HHHHHHHCCCEEEEEecCCCCCCCHHHHHHhc
Confidence 34677777666555555554321 121235666653 233322 224456679888887521 122222
Q ss_pred h-hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 521 H-EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 521 ~-~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
. +...|++ ...=...|.+.. + ..|+-+|+.+++.++|
T Consensus 138 ~~~t~lv~~-~~~~n~tG~~~~-~--~~I~~la~~~g~~~iv 175 (382)
T TIGR03403 138 TEKTALVSV-MWANNETGMIFP-I--KEIGEICKERGVLFHT 175 (382)
T ss_pred ccCCeEEEE-EcccCCCccccC-H--HHHHHHHHHcCCEEEE
Confidence 2 2233333 211122343333 2 3577788999988775
No 387
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=23.63 E-value=9.1e+02 Score=25.75 Aligned_cols=99 Identities=17% Similarity=0.099 Sum_probs=46.1
Q ss_pred CEEEeecCcHHHHHHHHHHHHc-CCeeEEEEcCCCCCchHHHHHHHHH--hCCCceEEEec--------hHHHHHhh-hc
Q 006577 456 DVLLTYGSSSAVEMILQHAHEL-GKQFRVVIVDSRPKHEGKLLLRRLV--RKGLSCTYTHI--------NAISYIIH-EV 523 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~-Gk~f~ViV~ESRP~~eG~~La~eL~--~~GI~vTlI~D--------sAv~~iM~-~V 523 (640)
.+++|.+.+..++..+..+... ++.-.|++. .|.+.....+..+. ..|+.+.++.- ..+-..+. ++
T Consensus 83 ~v~~~~~g~~~~~~~~~~~~~~~~~gd~Vl~~--~~~h~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~t 160 (398)
T cd00613 83 NASLQDEATAAAEAAGLAAIRAYHKRNKVLVP--DSAHPTNPAVARTRGEPLGIEVVEVPSDEGGTVDLEALKEEVSEEV 160 (398)
T ss_pred ceeccCchHHHHHHHHHHHHhcccCCCEEEEc--CccCcchHHHHHHhcccCCcEEEEeccCCCCCcCHHHHHHhcCCCe
Confidence 4555543333344444444322 223355553 44444333333332 23465555532 12222222 34
Q ss_pred cEEEEcceeEecCCCeecccch-HHHHHHHhhCCCcEEE
Q 006577 524 TRVFLGASSVLSNGTVCSRVGT-ACVAMVAYGFHIPVLV 561 (640)
Q Consensus 524 dkVlvGADaIlaNG~VvNKiGT-~~lAlaAk~~~VPVyV 561 (640)
..|++-. .-..|.+ ..- -.|+-+|++|++.++|
T Consensus 161 ~~viv~~--~~~~G~~---~~~l~~i~~la~~~g~~liv 194 (398)
T cd00613 161 AALMVQY--PNTLGVF---EDLIKEIADIAHSAGALVYV 194 (398)
T ss_pred EEEEEEC--CCCCcee---cchHHHHHHHHHhcCCEEEE
Confidence 4444433 2334544 243 5567789999998877
No 388
>PRK12342 hypothetical protein; Provisional
Probab=23.54 E-value=3.6e+02 Score=28.59 Aligned_cols=92 Identities=16% Similarity=0.113 Sum_probs=55.9
Q ss_pred CEEEeecCcHHHHH-HHHHHHHcCCeeEEEEcCCCCCchHH---HHHHHHHhCCCceEEEechHHHHHhhhccEEEEcce
Q 006577 456 DVLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGK---LLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGAS 531 (640)
Q Consensus 456 dvILT~g~SstV~~-vL~~A~e~Gk~f~ViV~ESRP~~eG~---~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGAD 531 (640)
-+++|+|..+.-.. ++++|...|-.--|.+. .+ .+.|. ..++-|+. ++-. + ..|.||.|-.
T Consensus 54 Vtvls~Gp~~a~~~~l~r~alamGaD~avli~-d~-~~~g~D~~ata~~La~-----------~i~~-~-~~DLVl~G~~ 118 (254)
T PRK12342 54 IAALTVGGSLLQNSKVRKDVLSRGPHSLYLVQ-DA-QLEHALPLDTAKALAA-----------AIEK-I-GFDLLLFGEG 118 (254)
T ss_pred EEEEEeCCChHhHHHHHHHHHHcCCCEEEEEe-cC-ccCCCCHHHHHHHHHH-----------HHHH-h-CCCEEEEcCC
Confidence 36789998776555 56888888876444443 33 23332 22344432 1111 1 4899999987
Q ss_pred eEecCCCeecccchHHHHHHHhhCCCcEEEeccccccc
Q 006577 532 SVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFH 569 (640)
Q Consensus 532 aIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~aetyKf~ 569 (640)
++-.+.+. + =+++|...++|++-.+...++.
T Consensus 119 s~D~~tgq---v----g~~lA~~Lg~P~vt~v~~~~~~ 149 (254)
T PRK12342 119 SGDLYAQQ---V----GLLLGELLQLPVINAVSKIQRQ 149 (254)
T ss_pred cccCCCCC---H----HHHHHHHhCCCcEeeEEEEEEe
Confidence 77554332 2 2478999999998766555553
No 389
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=23.31 E-value=9.7e+02 Score=26.61 Aligned_cols=98 Identities=11% Similarity=0.115 Sum_probs=47.2
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHH-HH-HHHHhCCCceEEEech---HHHHHhh-hccEEEEc
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKL-LL-RRLVRKGLSCTYTHIN---AISYIIH-EVTRVFLG 529 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~-La-~eL~~~GI~vTlI~Ds---Av~~iM~-~VdkVlvG 529 (640)
+.|+|-+-+..+..++....+.|. +|++ ..|.+.+.. +. ..+...|+.+..+... .+-..+. +...|++-
T Consensus 77 ~~v~~~sG~~Ai~~~l~all~pGD--~Vvv--~~p~Y~~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~~tklV~l~ 152 (405)
T PRK08776 77 GGVITATGMGAINLVLNALLQPGD--TLVV--PHDAYGGSWRLFNALAKKGHFALITADLTDPRSLADALAQSPKLVLIE 152 (405)
T ss_pred ceEEEcCHHHHHHHHHHHHhCCCC--EEEE--ccCCchHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCcCCeEEEEE
Confidence 345554444444444444444443 4444 346665532 33 3344567877776421 2333332 33334332
Q ss_pred ceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 530 ADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
.---..|.+.. -..|+-+|+.++++++|
T Consensus 153 -~P~NPtG~v~d---l~~I~~la~~~gi~vIv 180 (405)
T PRK08776 153 -TPSNPLLRITD---LRFVIEAAHKVGALTVV 180 (405)
T ss_pred -CCCCCCCccCC---HHHHHHHHHHcCCEEEE
Confidence 22223343322 23566678899988776
No 390
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=23.29 E-value=4.9e+02 Score=28.96 Aligned_cols=89 Identities=15% Similarity=0.150 Sum_probs=50.8
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEcceeEec
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLS 535 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGADaIla 535 (640)
..|+.+|...+=...++.+...+-.+.|.+.|.++... +...|.+ ||.+.+-... .. .+.++|.||++. +|-.
T Consensus 8 ~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~---~~~~l~~-g~~~~~g~~~-~~-~~~~~d~vV~Sp-gI~~ 80 (438)
T PRK04663 8 KNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPP---GQEQLPE-DVELHSGGWN-LE-WLLEADLVVTNP-GIAL 80 (438)
T ss_pred ceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCch---hHHHhhc-CCEEEeCCCC-hH-HhccCCEEEECC-CCCC
Confidence 45777776665555555555554448999999887532 2345644 8776654211 12 236788887654 2221
Q ss_pred CCCeecccchHHHHHHHhhCCCcEE
Q 006577 536 NGTVCSRVGTACVAMVAYGFHIPVL 560 (640)
Q Consensus 536 NG~VvNKiGT~~lAlaAk~~~VPVy 560 (640)
+...-..|++.+||++
T Consensus 81 ---------~~p~~~~a~~~gi~i~ 96 (438)
T PRK04663 81 ---------ATPEIQQVLAAGIPVV 96 (438)
T ss_pred ---------CCHHHHHHHHCCCcEE
Confidence 1234455566666665
No 391
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=23.26 E-value=1.3e+02 Score=33.64 Aligned_cols=31 Identities=29% Similarity=0.367 Sum_probs=25.2
Q ss_pred EEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCC
Q 006577 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSR 489 (640)
Q Consensus 457 vILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESR 489 (640)
+||..|.+.....+++.|++.| ++|+++++.
T Consensus 4 kili~g~g~~~~~~~~aa~~lG--~~vv~~~~~ 34 (449)
T TIGR00514 4 KILIANRGEIALRILRACKELG--IKTVAVHST 34 (449)
T ss_pred eEEEeCCCHHHHHHHHHHHHcC--CeEEEEECh
Confidence 7899999999999999999876 566666553
No 392
>PRK15062 hydrogenase isoenzymes formation protein HypD; Provisional
Probab=23.20 E-value=2.2e+02 Score=31.82 Aligned_cols=101 Identities=14% Similarity=0.144 Sum_probs=61.1
Q ss_pred echHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEecccccccccccC---------C-Cccccc
Q 006577 512 HINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQL---------D-SICSNE 581 (640)
Q Consensus 512 ~DsAv~~iM~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~aetyKf~~~~~~---------d-s~i~nE 581 (640)
+-.++.++|..=+. .-|.++.=|.|..-+|+-.-.-++.+|++|++|. ..-..+--... + ..+.|+
T Consensus 171 ~PPa~~~ll~~~~~---~idgfi~PGHVstI~G~~~y~~l~~~y~~P~VVa-GFEp~DiL~ai~~lv~q~~~g~~~v~N~ 246 (364)
T PRK15062 171 VPPAMRALLEDPEL---RIDGFIAPGHVSTIIGTEPYEFLAEEYGIPVVVA-GFEPLDILQSILMLVRQLEEGRAEVENQ 246 (364)
T ss_pred cHHHHHHHHcCCCC---CccEEEecCEeEEEeccchhHHHHHHcCCCeEEe-ccCHHHHHHHHHHHHHHHHCCCceEEEc
Confidence 45677778764332 5677888999999999999999999999999984 32222111000 0 112222
Q ss_pred ccCccCcccCCCCCcccCccccccccCCC---Ccccccchh
Q 006577 582 LGMHSKNMGTPNTSFRTHALWLLIQVSCL---QVILIPFQR 619 (640)
Q Consensus 582 lrdP~Evl~~~g~~~~~~~~nPaFDVTP~---eli~iP~s~ 619 (640)
+. .++...|.......++-.|++... .+|.||-|.
T Consensus 247 Y~---r~V~~eGN~~A~~~i~~vFe~~d~~WRGlG~Ip~SG 284 (364)
T PRK15062 247 YT---RVVKEEGNLKAQELIAEVFEVRDAFWRGLGVIPNSG 284 (364)
T ss_pred cc---eeeCcccCHHHHHHHHHHcCcCCCcccCCCccCchh
Confidence 21 111112222223456677777777 588888666
No 393
>PRK08636 aspartate aminotransferase; Provisional
Probab=23.08 E-value=7.9e+02 Score=26.73 Aligned_cols=99 Identities=10% Similarity=0.027 Sum_probs=55.3
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEe---ch-----------HHHHHhh
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH---IN-----------AISYIIH 521 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~---Ds-----------Av~~iM~ 521 (640)
.+++|.|....+..++....+.|. .|+| + .|.+.+...+.. ..|+.+..+. |. .+..+++
T Consensus 97 ~I~it~G~~~al~~~~~~l~~~gd--~Vlv-~-~P~y~~~~~~~~--~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~ 170 (403)
T PRK08636 97 EVVATMGSKEGYVHLVQAITNPGD--VAIV-P-DPAYPIHSQAFI--LAGGNVHKMPLEYNEDFELDEDQFFENLEKALR 170 (403)
T ss_pred eEEECCChHHHHHHHHHHhCCCCC--EEEE-c-CCCCcchHHHHH--hcCCEEEEEeccccccCccChhhhhhHHHHHHh
Confidence 588999988877766665544443 4444 3 387777655433 3677766553 12 1222232
Q ss_pred ----hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 522 ----EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 522 ----~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
++..+++- .-=-.-|.++..-=-..|+-+|++|++.+++
T Consensus 171 ~~~~~~~~i~~~-~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~ 213 (403)
T PRK08636 171 ESSPKPKYVVVN-FPHNPTTATVEKSFYERLVALAKKERFYIIS 213 (403)
T ss_pred hccCCceEEEEe-CCCCCCCccCCHHHHHHHHHHHHHcCcEEEE
Confidence 33344332 1012335555544446677789999988775
No 394
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=23.05 E-value=8.1e+02 Score=24.95 Aligned_cols=97 Identities=16% Similarity=0.187 Sum_probs=51.7
Q ss_pred cHHHHHHHHHHHH---cCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhh----hccEEEEcceeEecC
Q 006577 464 SSAVEMILQHAHE---LGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIH----EVTRVFLGASSVLSN 536 (640)
Q Consensus 464 SstV~~vL~~A~e---~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~----~VdkVlvGADaIlaN 536 (640)
+...+.++..|+. .+.++-|=|.=|. +|.+..+.|.+.||+|...+.-.+...+- .++.|=.-..++-..
T Consensus 60 ~~~~e~~i~~a~~l~~~~~~~~iKIP~T~---~gl~ai~~L~~~gi~v~~T~V~s~~Qa~~Aa~AGA~yvsP~vgR~~~~ 136 (211)
T cd00956 60 STDAEGMVAEARKLASLGGNVVVKIPVTE---DGLKAIKKLSEEGIKTNVTAIFSAAQALLAAKAGATYVSPFVGRIDDL 136 (211)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEEEcCcH---hHHHHHHHHHHcCCceeeEEecCHHHHHHHHHcCCCEEEEecChHhhc
Confidence 4445555555553 2233333233333 89999999999999887655433333322 344443333344333
Q ss_pred CCeecccchH---HHHHHHhhCCCcEEEeccccc
Q 006577 537 GTVCSRVGTA---CVAMVAYGFHIPVLVCCEAYK 567 (640)
Q Consensus 537 G~VvNKiGT~---~lAlaAk~~~VPVyV~aetyK 567 (640)
|. -|.. .+.-+++.++.+.=|++.+++
T Consensus 137 g~----dg~~~i~~i~~~~~~~~~~tkil~As~r 166 (211)
T cd00956 137 GG----DGMELIREIRTIFDNYGFDTKILAASIR 166 (211)
T ss_pred CC----CHHHHHHHHHHHHHHcCCCceEEecccC
Confidence 32 1222 233355667777777666653
No 395
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=22.99 E-value=1.2e+02 Score=31.93 Aligned_cols=58 Identities=12% Similarity=0.080 Sum_probs=39.4
Q ss_pred ccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEec
Q 006577 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI 513 (640)
Q Consensus 452 I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D 513 (640)
+..|++|.+.+.+..-..+=..|+..|.+++|++.++-|.. ....+...|-+++++..
T Consensus 54 ~~~g~~vv~aSsGN~g~alA~~a~~~Gl~~~i~vp~~~~~~----k~~~~~~~GA~v~~~~~ 111 (298)
T TIGR01139 54 LKPGKTIVEPTSGNTGIALAMVAAARGYKLILTMPETMSIE----RRKLLKAYGAELVLTPG 111 (298)
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHHcCCeEEEEeCCccCHH----HHHHHHHcCCEEEEECC
Confidence 45567777776666655555566667888888888876632 24556678888887754
No 396
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=22.98 E-value=4.3e+02 Score=26.36 Aligned_cols=68 Identities=15% Similarity=0.222 Sum_probs=40.4
Q ss_pred HHhccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEE
Q 006577 449 VTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFL 528 (640)
Q Consensus 449 ~~~I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlv 528 (640)
-+++-.|.++++.||..+=.++-+.++..| -+|+|+|..|.. .+ +-...|+.+.- +..+.+..|.+|.
T Consensus 17 t~~~l~Gk~vvV~GYG~vG~g~A~~lr~~G--a~V~V~e~DPi~----al-qA~~dGf~v~~-----~~~a~~~adi~vt 84 (162)
T PF00670_consen 17 TNLMLAGKRVVVIGYGKVGKGIARALRGLG--ARVTVTEIDPIR----AL-QAAMDGFEVMT-----LEEALRDADIFVT 84 (162)
T ss_dssp H-S--TTSEEEEE--SHHHHHHHHHHHHTT---EEEEE-SSHHH----HH-HHHHTT-EEE------HHHHTTT-SEEEE
T ss_pred CceeeCCCEEEEeCCCcccHHHHHHHhhCC--CEEEEEECChHH----HH-HhhhcCcEecC-----HHHHHhhCCEEEE
Confidence 456677999999999987777777776544 799999999942 22 23337887763 3445678887764
No 397
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=22.90 E-value=1.8e+02 Score=30.45 Aligned_cols=41 Identities=15% Similarity=0.177 Sum_probs=21.6
Q ss_pred hHHHHHHHHHhCCCceEEEechH-HHHH---hhhccEEEEcceeE
Q 006577 493 EGKLLLRRLVRKGLSCTYTHINA-ISYI---IHEVTRVFLGASSV 533 (640)
Q Consensus 493 eG~~La~eL~~~GI~vTlI~DsA-v~~i---M~~VdkVlvGADaI 533 (640)
.|+.+++.|.+.|+++.+|.... .... +.+.|.||.-++..
T Consensus 20 s~~~i~~al~~~g~~~~~i~~~~~~~~~~~~~~~~D~v~~~~~g~ 64 (299)
T PRK14571 20 SGERVKKALEKLGYEVTVFDVDEDFLKKVDQLKSFDVVFNVLHGT 64 (299)
T ss_pred HHHHHHHHHHHcCCeEEEEccCchHHHHhhhccCCCEEEEeCCCC
Confidence 45555566666666665554221 1111 23567777776654
No 398
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=22.75 E-value=3.5e+02 Score=24.85 Aligned_cols=72 Identities=22% Similarity=0.356 Sum_probs=40.1
Q ss_pred CCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEcc
Q 006577 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA 530 (640)
Q Consensus 454 dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGA 530 (640)
++.+|+..|....-..+.+...+.| ..+|++.+.++. ....++.++...++.+.+. | ...++.++|.||+..
T Consensus 18 ~~~~i~iiG~G~~g~~~a~~l~~~g-~~~v~v~~r~~~-~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~Dvvi~~~ 89 (155)
T cd01065 18 KGKKVLILGAGGAARAVAYALAELG-AAKIVIVNRTLE-KAKALAERFGELGIAIAYL-D--LEELLAEADLIINTT 89 (155)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC-CCEEEEEcCCHH-HHHHHHHHHhhcccceeec-c--hhhccccCCEEEeCc
Confidence 4577888888665555555555554 346777765433 3344555554433333332 2 122256788887754
No 399
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=22.64 E-value=6.1e+02 Score=26.40 Aligned_cols=50 Identities=26% Similarity=0.303 Sum_probs=31.5
Q ss_pred HHHHHHHHHHH----cCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHH
Q 006577 466 AVEMILQHAHE----LGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISY 518 (640)
Q Consensus 466 tV~~vL~~A~e----~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~ 518 (640)
..+.++.+|++ -|.++-|=|.=|. +|.+..+.|.+.||+|..+..-++..
T Consensus 65 ~~~~mi~eA~~l~~~~~~nv~VKIP~T~---~Gl~Ai~~L~~~Gi~vn~T~ifs~~Q 118 (222)
T PRK12656 65 DYEGILKDAHEIRRQCGDDVYIKVPVTP---AGLAAIKTLKAEGYHITATAIYTVFQ 118 (222)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCH---HHHHHHHHHHHCCCceEEeeeCCHHH
Confidence 34555555543 3455555444333 59999999999999988666444433
No 400
>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=22.63 E-value=70 Score=35.49 Aligned_cols=47 Identities=28% Similarity=0.376 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHcCCeeEEEEcCCCCCc-hHHH--HHHHHHhCCCceEEEe
Q 006577 465 SAVEMILQHAHELGKQFRVVIVDSRPKH-EGKL--LLRRLVRKGLSCTYTH 512 (640)
Q Consensus 465 stV~~vL~~A~e~Gk~f~ViV~ESRP~~-eG~~--La~eL~~~GI~vTlI~ 512 (640)
|-+...|..|.++||+.+|+| |=+-+| |-.. .+++|.++|+.|.|-.
T Consensus 50 S~iv~aLi~AA~nGK~Vtv~v-ELkARFDEe~Ni~Wa~~Le~aGv~ViyG~ 99 (352)
T PF13090_consen 50 SPIVNALIEAAENGKQVTVLV-ELKARFDEENNIHWAKRLEEAGVHVIYGV 99 (352)
T ss_dssp -HHHHHHHHHHHTT-EEEEEE-STTSSSTTCCCCCCCHHHHHCT-EEEE--
T ss_pred CHHHHHHHHHHHcCCEEEEEE-EEeccccHHHHhHHHhhHHhcCeEEEcCC
Confidence 345556667778899988765 544443 3333 3589999999988743
No 401
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=22.53 E-value=5.2e+02 Score=27.22 Aligned_cols=63 Identities=11% Similarity=0.082 Sum_probs=40.6
Q ss_pred HHHHHHhCCCceEEEechHHHH----HhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEecccc
Q 006577 497 LLRRLVRKGLSCTYTHINAISY----IIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAY 566 (640)
Q Consensus 497 La~eL~~~GI~vTlI~DsAv~~----iM~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~aety 566 (640)
+...|...|++|.++.|.-... .+.+=|.+|+ |.-.|. .--+..++-.||..|+|++.++...
T Consensus 60 ~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~i~----iS~sG~---t~~~~~~~~~ak~~g~~vI~iT~~~ 126 (321)
T PRK11543 60 IAATLASTGTPAFFVHPAEALHGDLGMIESRDVMLF----ISYSGG---AKELDLIIPRLEDKSIALLAMTGKP 126 (321)
T ss_pred HHHHHHcCCCceeecChHHHhhCCcCccCCCCEEEE----EeCCCC---cHHHHHHHHHHHHcCCeEEEEECCC
Confidence 4456677888888887642211 1234456554 334553 3346778889999999999987643
No 402
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=22.48 E-value=7.7e+02 Score=27.06 Aligned_cols=88 Identities=18% Similarity=0.266 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHcCCeeEEEEcCCCCCchHH-HHH-HHHHhCCCceEEEechHHHHH---hh-hccEEEEcceeEecCCCe
Q 006577 466 AVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLL-RRLVRKGLSCTYTHINAISYI---IH-EVTRVFLGASSVLSNGTV 539 (640)
Q Consensus 466 tV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~-~La-~eL~~~GI~vTlI~DsAv~~i---M~-~VdkVlvGADaIlaNG~V 539 (640)
.+..+|....+.|. +|++ +.|.+.|. .+. ..+...|+.+.++.......+ +. +...|++- .---..|.+
T Consensus 88 Ai~~~l~all~~Gd--~Vl~--~~~~y~~t~~~~~~~~~~~gi~~~~~d~~d~e~l~~~i~~~tklV~ie-~p~NPtg~~ 162 (388)
T PRK07811 88 ATDCLLRAVLRPGD--HIVI--PNDAYGGTFRLIDKVFTRWGVEYTPVDLSDLDAVRAAITPRTKLIWVE-TPTNPLLSI 162 (388)
T ss_pred HHHHHHHHHhCCCC--EEEE--cCCCchHHHHHHHHhCcCCCeEEEEeCCCCHHHHHHhcCcCCeEEEEE-CCCCCccee
Confidence 33334443433333 4555 33666543 232 334446777776542222222 22 33334332 111112322
Q ss_pred ecccchHHHHHHHhhCCCcEEE
Q 006577 540 CSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 540 vNKiGT~~lAlaAk~~~VPVyV 561 (640)
.---.|+-+|+.++++++|
T Consensus 163 ---~dl~~I~~la~~~gi~lIv 181 (388)
T PRK07811 163 ---TDIAALAELAHDAGAKVVV 181 (388)
T ss_pred ---cCHHHHHHHHHHcCCEEEE
Confidence 2334567788999988776
No 403
>PF08032 SpoU_sub_bind: RNA 2'-O ribose methyltransferase substrate binding; InterPro: IPR013123 Most cellular RNAs undergo a number of post-transcriptional nucleoside modifications. While the biological role of many of these modifications is unknown, some have been shown to be necessary for cell growth or for resistance to antibiotics [, ]. One of the most common modifications is 2'O-ribose methylation catalysed by the RNA 2'O-ribose methyltransferases, a large enzyme family that transfer a methyl group from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of the backbone ribose []. This entry represents a substrate-binding domain found in a variety of bacterial and mitochondrial RNA 2'-O ribose methyltransferases. These include the bacterial enzyme RlmB, which specifically methylates the conserved nucleotide guanosine 2251 in 23S RNA, and PET56, which specifically methylates the equivalent guanosine in mitochondrial 21S RNA [, ]. This domain forms a four-stranded mixed beta sheet similar to that found in other RNA binding enzymes []. It shows considerable conformational flexibility which is thought to be important for its ability to bind RNA.; GO: 0008168 methyltransferase activity; PDB: 1GZ0_D 1IPA_A.
Probab=22.44 E-value=2.6e+02 Score=22.90 Aligned_cols=53 Identities=11% Similarity=0.190 Sum_probs=33.5
Q ss_pred HHHHHHHHcCC-eeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhh
Q 006577 469 MILQHAHELGK-QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIH 521 (640)
Q Consensus 469 ~vL~~A~e~Gk-~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~ 521 (640)
+.+.+|.+.+. -.+||+.+..-...-..+...+.+.|+++.++.+.-+..+-.
T Consensus 6 ~~V~eaL~~~~~i~~l~~~~~~~~~~~~~i~~~~~~~~i~v~~v~~~~l~~ls~ 59 (76)
T PF08032_consen 6 HAVEEALKSGPRIKKLFVTEEKADKRIKEILKLAKKKGIPVYEVSKKVLDKLSD 59 (76)
T ss_dssp HHHHHHHHCTGGEEEEEEETT---CCTHHHHHHHHHCT-EEEEE-HHHHHHCTT
T ss_pred HHHHHHHcCCCCccEEEEEcCccchhHHHHHHHHHHcCCeEEEeCHHHHHHHcC
Confidence 34556666665 456888888333334567788888999999998877665543
No 404
>TIGR01746 Thioester-redct thioester reductase domain. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.
Probab=22.37 E-value=8.6e+02 Score=25.01 Aligned_cols=107 Identities=14% Similarity=0.058 Sum_probs=53.4
Q ss_pred EEeecCcHHHH-HHHHHHHHcCCeeEEEEcCCCCCch-HH-HHHHHHHhCCC--------ceEEEe-c----------hH
Q 006577 458 LLTYGSSSAVE-MILQHAHELGKQFRVVIVDSRPKHE-GK-LLLRRLVRKGL--------SCTYTH-I----------NA 515 (640)
Q Consensus 458 ILT~g~SstV~-~vL~~A~e~Gk~f~ViV~ESRP~~e-G~-~La~eL~~~GI--------~vTlI~-D----------sA 515 (640)
||..|-++.+- .+++.+.++|...+|+++.-.+..+ +. ++...+...++ .++++. | ..
T Consensus 2 vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~gl~~~~ 81 (367)
T TIGR01746 2 VLLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEPRLGLSDAE 81 (367)
T ss_pred EEEeccchHHHHHHHHHHHhCCCCCEEEEEEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccCCcCHHH
Confidence 45556665543 3455555666445677774332211 21 33333333221 233322 3 12
Q ss_pred HHHHhhhccEEEEcceeEecCCC-----eecccchHHHHHHHhhCCCc-EEEecc
Q 006577 516 ISYIIHEVTRVFLGASSVLSNGT-----VCSRVGTACVAMVAYGFHIP-VLVCCE 564 (640)
Q Consensus 516 v~~iM~~VdkVlvGADaIlaNG~-----VvNKiGT~~lAlaAk~~~VP-VyV~ae 564 (640)
...+...+|.||-.|-.+-..+. -.|-.||..+.-+|...++. |+.+..
T Consensus 82 ~~~~~~~~d~vih~a~~~~~~~~~~~~~~~nv~g~~~ll~~a~~~~~~~~v~iSS 136 (367)
T TIGR01746 82 WERLAENVDTIVHNGALVNWVYPYSELRAANVLGTREVLRLAASGRAKPLHYVST 136 (367)
T ss_pred HHHHHhhCCEEEeCCcEeccCCcHHHHhhhhhHHHHHHHHHHhhCCCceEEEEcc
Confidence 33344567777665543321111 14667888888888888776 555443
No 405
>PTZ00129 40S ribosomal protein S14; Provisional
Probab=22.34 E-value=2.4e+02 Score=27.86 Aligned_cols=48 Identities=21% Similarity=0.286 Sum_probs=35.0
Q ss_pred HHHHHHHHHHcCC-eeEEEE-----cCCCCCchHHHHH-HHHHhCCCceEEEech
Q 006577 467 VEMILQHAHELGK-QFRVVI-----VDSRPKHEGKLLL-RRLVRKGLSCTYTHIN 514 (640)
Q Consensus 467 V~~vL~~A~e~Gk-~f~ViV-----~ESRP~~eG~~La-~eL~~~GI~vTlI~Ds 514 (640)
++.+...+.+.|. .++|+| .-+.=...|++.+ +.|...|+.+..|.|-
T Consensus 78 a~~~a~k~~~~Gi~~v~V~vr~~gg~~~kg~GpGr~~airaL~~~glkI~~I~Dv 132 (149)
T PTZ00129 78 AQDVAARCKELGINALHIKLRATGGVRTKTPGPGAQAALRALARAGLKIGRIEDV 132 (149)
T ss_pred HHHHHHHHHHcCCeEEEEEEEecCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEec
Confidence 4666777777774 467777 2234445777877 9999999999999884
No 406
>PRK15473 cbiF cobalt-precorrin-4 C(11)-methyltransferase; Provisional
Probab=22.32 E-value=5.2e+02 Score=26.77 Aligned_cols=52 Identities=12% Similarity=0.140 Sum_probs=33.6
Q ss_pred HHHHHHHHcCCeeEEEEcCCCCCchH--HHHHHHHHhCCCceEEEe-chHHHHHhh
Q 006577 469 MILQHAHELGKQFRVVIVDSRPKHEG--KLLLRRLVRKGLSCTYTH-INAISYIIH 521 (640)
Q Consensus 469 ~vL~~A~e~Gk~f~ViV~ESRP~~eG--~~La~eL~~~GI~vTlI~-DsAv~~iM~ 521 (640)
..|.+..++|++ -|+++...|.+-| ..|.+.|.+.||++++|+ .+++.++..
T Consensus 71 ~~i~~~~~~g~~-Vv~L~sGDP~~yg~~~~l~~~l~~~~i~veiiPGISS~~aaaA 125 (257)
T PRK15473 71 DLMEAGVKAGKT-VVRLQTGDVSLYGSIREQGEELTKRGIDFQVVPGVSSFLGAAA 125 (257)
T ss_pred HHHHHHHHCCCe-EEEEeCcCchhhhhHHHHHHHHHHCCCCEEEeCChhHHHHHHH
Confidence 334444445655 3444577786654 567788888888888888 666666655
No 407
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=22.31 E-value=1.2e+02 Score=27.60 Aligned_cols=27 Identities=15% Similarity=0.196 Sum_probs=16.8
Q ss_pred hccCCCEEEeecCcHH---HHHHHHHHHHc
Q 006577 451 KIRDGDVLLTYGSSSA---VEMILQHAHEL 477 (640)
Q Consensus 451 ~I~dgdvILT~g~Sst---V~~vL~~A~e~ 477 (640)
.+.++|.++.+++|+. +...++.|+++
T Consensus 44 ~~~~~dl~I~iS~SG~t~~~~~~~~~a~~~ 73 (120)
T cd05710 44 RLTEKSVVILASHSGNTKETVAAAKFAKEK 73 (120)
T ss_pred cCCCCcEEEEEeCCCCChHHHHHHHHHHHc
Confidence 5667788888877754 44445555443
No 408
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=22.27 E-value=5.1e+02 Score=22.35 Aligned_cols=62 Identities=11% Similarity=0.186 Sum_probs=32.0
Q ss_pred ccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcC-CCCCchHHHHHHHHHhCCCceEEEechH
Q 006577 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVD-SRPKHEGKLLLRRLVRKGLSCTYTHINA 515 (640)
Q Consensus 452 I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~E-SRP~~eG~~La~eL~~~GI~vTlI~DsA 515 (640)
...+..+|.||.+......+....++ ..+.+++.. +-+..+...+...+.+..+ ..+++-++
T Consensus 25 ~~~~~~~lvf~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~f~~~~~-~ili~t~~ 87 (131)
T cd00079 25 LKKGGKVLIFCPSKKMLDELAELLRK-PGIKVAALHGDGSQEEREEVLKDFREGEI-VVLVATDV 87 (131)
T ss_pred ccCCCcEEEEeCcHHHHHHHHHHHHh-cCCcEEEEECCCCHHHHHHHHHHHHcCCC-cEEEEcCh
Confidence 33677899999887655555555433 233343332 3333444444455655443 33444333
No 409
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=22.22 E-value=5.9e+02 Score=27.64 Aligned_cols=62 Identities=19% Similarity=0.275 Sum_probs=38.7
Q ss_pred HHHHhCCCceEEEech--------HHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhC----CCcEEEeccc
Q 006577 499 RRLVRKGLSCTYTHIN--------AISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGF----HIPVLVCCEA 565 (640)
Q Consensus 499 ~eL~~~GI~vTlI~Ds--------Av~~iM~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~----~VPVyV~aet 565 (640)
+.|.+.||++++|.-. .+...+++..+|| ++.++....-.|.....+++.+. ..|+.-++..
T Consensus 221 ~~L~~~Gi~v~vi~~~~l~Pld~~~i~~~~~~~~~vv-----~vEe~~~~gGlg~~la~~l~~~~~~~~~~~i~r~~~~ 294 (327)
T PRK09212 221 ELLEKEGISVEVIDLRTLRPLDTETIIESVKKTNRLV-----VVEEGWPFAGVGAEIAALIMKEAFDYLDAPVERVTGK 294 (327)
T ss_pred HHHHhcCCcEEEEEEecCCCCCHHHHHHHHHhCCeEE-----EEcCCCCCCCHHHHHHHHHHHhCccccCCCeEEEcCC
Confidence 3445556655554322 3455566777775 56777777778888888888764 3466554443
No 410
>PRK07454 short chain dehydrogenase; Provisional
Probab=22.22 E-value=6.9e+02 Score=24.44 Aligned_cols=74 Identities=19% Similarity=0.095 Sum_probs=41.9
Q ss_pred CCCEEEeecCcHHH-HHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEE-ec----hHHHHHhh------
Q 006577 454 DGDVLLTYGSSSAV-EMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT-HI----NAISYIIH------ 521 (640)
Q Consensus 454 dgdvILT~g~SstV-~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI-~D----sAv~~iM~------ 521 (640)
++.+||..|.++.+ ..+.+.+.++|- +|+++. |.......+...+.+.+-.+.++ +| ..+..++.
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~--~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGW--DLALVA-RSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQF 81 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEe-CCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 45677777776654 445566666664 677775 44344455556666655555433 23 23333443
Q ss_pred -hccEEEEcc
Q 006577 522 -EVTRVFLGA 530 (640)
Q Consensus 522 -~VdkVlvGA 530 (640)
.+|.||-.|
T Consensus 82 ~~id~lv~~a 91 (241)
T PRK07454 82 GCPDVLINNA 91 (241)
T ss_pred CCCCEEEECC
Confidence 478887765
No 411
>PRK07671 cystathionine beta-lyase; Provisional
Probab=22.18 E-value=9.6e+02 Score=26.26 Aligned_cols=93 Identities=14% Similarity=0.229 Sum_probs=45.1
Q ss_pred ecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHH-HHH-HHHHhCCCceEEEechHHHHHhh----hccEEEEcceeEe
Q 006577 461 YGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLL-RRLVRKGLSCTYTHINAISYIIH----EVTRVFLGASSVL 534 (640)
Q Consensus 461 ~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~-~La-~eL~~~GI~vTlI~DsAv~~iM~----~VdkVlvGADaIl 534 (640)
+++.......+..+.+.|. +|+|.+ |.+.|. .+. ..+...|+.++++...-...+.+ +..+|++- .---
T Consensus 71 ~~sG~aai~~~~~~l~~Gd--~Viv~~--~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~ai~~~tklV~le-~P~N 145 (377)
T PRK07671 71 FGSGMAAITAVMMLFSSGD--HVILTD--DVYGGTYRVMTKVLNRFGIEHTFVDTSNLEEVEEAIRPNTKAIYVE-TPTN 145 (377)
T ss_pred eCCHHHHHHHHHHHhCCCC--EEEECC--CccchHHHHHHHHHhcCCeEEEEECCCCHHHHHHhcCCCCeEEEEE-CCCC
Confidence 3443333333333444443 566544 555543 333 45667899888875322222322 34444441 1111
Q ss_pred cCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 535 SNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 535 aNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
..|.+ .---.|+-+|++++++++|
T Consensus 146 Ptg~~---~dl~~I~~la~~~g~~lvv 169 (377)
T PRK07671 146 PLLKI---TDIKKISTIAKEKGLLTIV 169 (377)
T ss_pred CCCcc---cCHHHHHHHHHHcCCEEEE
Confidence 11222 2233567788999987776
No 412
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=22.15 E-value=2.8e+02 Score=28.94 Aligned_cols=90 Identities=14% Similarity=0.203 Sum_probs=55.1
Q ss_pred HHHHHhccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHH----Hhh
Q 006577 446 KHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISY----IIH 521 (640)
Q Consensus 446 ~~a~~~I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~----iM~ 521 (640)
+.++++|.+-..|..+|...+.. + | ..+...|...|++|.++.|..... .+.
T Consensus 131 ~~~~~~i~~A~~I~i~G~G~S~~--~--A--------------------~~l~~~l~~~g~~~~~~~d~~~~~~~~~~~~ 186 (292)
T PRK11337 131 HRAARFFYQARQRDLYGAGGSAA--I--A--------------------RDVQHKFLRIGVRCQAYDDAHIMLMSAALLQ 186 (292)
T ss_pred HHHHHHHHcCCeEEEEEecHHHH--H--H--------------------HHHHHHHhhCCCeEEEcCCHHHHHHHHhcCC
Confidence 45666777777777777654411 0 1 123455666788877777754332 344
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEecccc
Q 006577 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAY 566 (640)
Q Consensus 522 ~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~aety 566 (640)
+=|.||+- .-.|..- -+..++-.||.+|+++++++...
T Consensus 187 ~~Dl~I~i----S~sG~t~---~~~~~~~~ak~~g~~ii~IT~~~ 224 (292)
T PRK11337 187 EGDVVLVV----SHSGRTS---DVIEAVELAKKNGAKIICITNSY 224 (292)
T ss_pred CCCEEEEE----eCCCCCH---HHHHHHHHHHHCCCeEEEEeCCC
Confidence 55666542 2334322 26677889999999999987664
No 413
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=22.11 E-value=2.5e+02 Score=26.86 Aligned_cols=8 Identities=0% Similarity=-0.272 Sum_probs=4.2
Q ss_pred ceEEEech
Q 006577 507 SCTYTHIN 514 (640)
Q Consensus 507 ~vTlI~Ds 514 (640)
++.++.|+
T Consensus 80 d~i~~lD~ 87 (224)
T cd06442 80 DVIVVMDA 87 (224)
T ss_pred CEEEEEEC
Confidence 55555543
No 414
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=22.05 E-value=3.3e+02 Score=25.81 Aligned_cols=45 Identities=16% Similarity=0.211 Sum_probs=26.3
Q ss_pred EEEeecCcHHHHHHHHHHHHcC-CeeEEEEcCCCCCchHHHHHHHH
Q 006577 457 VLLTYGSSSAVEMILQHAHELG-KQFRVVIVDSRPKHEGKLLLRRL 501 (640)
Q Consensus 457 vILT~g~SstV~~vL~~A~e~G-k~f~ViV~ESRP~~eG~~La~eL 501 (640)
+|.||.....+..+|....++. ..++|||+|....-+-...++.+
T Consensus 2 iI~~~n~~~~l~~~l~sl~~q~~~~~eiiivD~~s~d~t~~~~~~~ 47 (202)
T cd04185 2 VVVTYNRLDLLKECLDALLAQTRPPDHIIVIDNASTDGTAEWLTSL 47 (202)
T ss_pred EEEeeCCHHHHHHHHHHHHhccCCCceEEEEECCCCcchHHHHHHh
Confidence 4666766667777777666543 34677777655554434444433
No 415
>PRK12414 putative aminotransferase; Provisional
Probab=22.04 E-value=8.2e+02 Score=26.38 Aligned_cols=93 Identities=15% Similarity=0.198 Sum_probs=48.3
Q ss_pred CCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEech---------HHHHHhh-hcc
Q 006577 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN---------AISYIIH-EVT 524 (640)
Q Consensus 455 gdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds---------Av~~iM~-~Vd 524 (640)
.++|+|.|.+..+..++......|. +|++. .|.+.+.... +...|..+..+... .+-..+. ++.
T Consensus 91 ~~i~it~g~~~al~~~~~~l~~~gd--~Vlv~--~p~y~~~~~~--~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~ 164 (384)
T PRK12414 91 SEVTVIASASEGLYAAISALVHPGD--EVIYF--EPSFDSYAPI--VRLQGATPVAIKLSPEDFRVNWDEVAAAITPRTR 164 (384)
T ss_pred CcEEEECChHHHHHHHHHHhcCCCC--EEEEe--CCCccchHHH--HHHcCCEEEEEecCccccccCHHHHHhhcCcccE
Confidence 3588887776666555555444443 45553 4666543333 23356665554421 1111221 233
Q ss_pred EEEEcceeEecCCCeecccch-------HHHHHHHhhCCCcEEE
Q 006577 525 RVFLGASSVLSNGTVCSRVGT-------ACVAMVAYGFHIPVLV 561 (640)
Q Consensus 525 kVlvGADaIlaNG~VvNKiGT-------~~lAlaAk~~~VPVyV 561 (640)
.|++ + ..-|.+|+ ..++-+|++|++.+++
T Consensus 165 ~v~i-------~-~p~NPTG~~~s~~~~~~i~~~a~~~~~~ii~ 200 (384)
T PRK12414 165 MIIV-------N-TPHNPSATVFSAADLARLAQLTRNTDIVILS 200 (384)
T ss_pred EEEE-------c-CCCCCCCcCCCHHHHHHHHHHHHHCCeEEEE
Confidence 3332 2 23466665 4456678889987775
No 416
>PRK05865 hypothetical protein; Provisional
Probab=22.00 E-value=2.2e+02 Score=35.23 Aligned_cols=98 Identities=14% Similarity=0.023 Sum_probs=55.9
Q ss_pred EEEeecCcHHHHH-HHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEE--Eec-hHHHHHhhhccEEEEccee
Q 006577 457 VLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTY--THI-NAISYIIHEVTRVFLGASS 532 (640)
Q Consensus 457 vILT~g~SstV~~-vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTl--I~D-sAv~~iM~~VdkVlvGADa 532 (640)
+||..|-++.+-. +++.+.++| .+|+++..++.. .+ ..++.... +.| ..+..+++++|.||--|-
T Consensus 2 kILVTGATGfIGs~La~~Ll~~G--~~Vv~l~R~~~~-------~~-~~~v~~v~gDL~D~~~l~~al~~vD~VVHlAa- 70 (854)
T PRK05865 2 RIAVTGASGVLGRGLTARLLSQG--HEVVGIARHRPD-------SW-PSSADFIAADIRDATAVESAMTGADVVAHCAW- 70 (854)
T ss_pred EEEEECCCCHHHHHHHHHHHHCc--CEEEEEECCchh-------hc-ccCceEEEeeCCCHHHHHHHHhCCCEEEECCC-
Confidence 5788888776654 444555555 466666433210 01 11322211 112 355666778898888763
Q ss_pred EecCCCeecccchHHHHHHHhhCCCcEEEeccc
Q 006577 533 VLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEA 565 (640)
Q Consensus 533 IlaNG~VvNKiGT~~lAlaAk~~~VPVyV~aet 565 (640)
......-+|-.||..+.-+|+.+++.-+|...+
T Consensus 71 ~~~~~~~vNv~GT~nLLeAa~~~gvkr~V~iSS 103 (854)
T PRK05865 71 VRGRNDHINIDGTANVLKAMAETGTGRIVFTSS 103 (854)
T ss_pred cccchHHHHHHHHHHHHHHHHHcCCCeEEEECC
Confidence 222233457789999888888888865554433
No 417
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=21.99 E-value=4.8e+02 Score=25.97 Aligned_cols=46 Identities=11% Similarity=0.244 Sum_probs=27.6
Q ss_pred hccEEEEcceeEecCCC-eecccc-----hHHHHHHHhhCCCcEEEeccccc
Q 006577 522 EVTRVFLGASSVLSNGT-VCSRVG-----TACVAMVAYGFHIPVLVCCEAYK 567 (640)
Q Consensus 522 ~VdkVlvGADaIlaNG~-VvNKiG-----T~~lAlaAk~~~VPVyV~aetyK 567 (640)
+++.|||=-=..+..+. -.++.. ...+.-+|+++++++++++...|
T Consensus 123 ~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~L~~la~~~~~~ii~~~q~~r 174 (242)
T cd00984 123 GLGLIVIDYLQLMSGSKKKGNRQQEVAEISRSLKLLAKELNVPVIALSQLSR 174 (242)
T ss_pred CCCEEEEcCchhcCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEecccCh
Confidence 56777764333333332 112211 23466789999999999997755
No 418
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=21.94 E-value=5.9e+02 Score=28.81 Aligned_cols=69 Identities=17% Similarity=0.124 Sum_probs=43.3
Q ss_pred CCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEcc
Q 006577 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA 530 (640)
Q Consensus 454 dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGA 530 (640)
++..|+.+|..++-..+.+.+++.|. .|++.|.++. ...+.|.+.||.+..-.+. .. .+...|.||+..
T Consensus 14 ~~~~v~v~G~G~sG~a~a~~L~~~G~--~V~~~D~~~~----~~~~~l~~~gi~~~~~~~~-~~-~~~~~d~vV~Sp 82 (473)
T PRK00141 14 LSGRVLVAGAGVSGRGIAAMLSELGC--DVVVADDNET----ARHKLIEVTGVADISTAEA-SD-QLDSFSLVVTSP 82 (473)
T ss_pred cCCeEEEEccCHHHHHHHHHHHHCCC--EEEEECCChH----HHHHHHHhcCcEEEeCCCc-hh-HhcCCCEEEeCC
Confidence 35678999988776677777777674 7888885543 1233345568877543222 12 235788887654
No 419
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=21.92 E-value=1.9e+02 Score=24.44 Aligned_cols=76 Identities=18% Similarity=0.274 Sum_probs=41.4
Q ss_pred EEEcCCCCCchHHHHHHHHHhCCC-ceEEEechHHHH-Hhh--hccEEEEcceeEecCCCeecccchHHHHHHHhh-CCC
Q 006577 483 VVIVDSRPKHEGKLLLRRLVRKGL-SCTYTHINAISY-IIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYG-FHI 557 (640)
Q Consensus 483 ViV~ESRP~~eG~~La~eL~~~GI-~vTlI~DsAv~~-iM~--~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~-~~V 557 (640)
|+|+|..|... ..+.+.|...|+ .|+...+..-+. .+. ..|.+|+.. ..-..-|-..+..+.+. +++
T Consensus 1 Ilivd~~~~~~-~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~d~iiid~-------~~~~~~~~~~~~~i~~~~~~~ 72 (112)
T PF00072_consen 1 ILIVDDDPEIR-ELLEKLLERAGYEEVTTASSGEEALELLKKHPPDLIIIDL-------ELPDGDGLELLEQIRQINPSI 72 (112)
T ss_dssp EEEEESSHHHH-HHHHHHHHHTTEEEEEEESSHHHHHHHHHHSTESEEEEES-------SSSSSBHHHHHHHHHHHTTTS
T ss_pred cEEEECCHHHH-HHHHHHHHhCCCCEEEEECCHHHHHHHhcccCceEEEEEe-------eeccccccccccccccccccc
Confidence 34445544432 123356667787 666666443322 223 467776663 33334455555555554 489
Q ss_pred cEEEecccc
Q 006577 558 PVLVCCEAY 566 (640)
Q Consensus 558 PVyV~aety 566 (640)
|+++++...
T Consensus 73 ~ii~~t~~~ 81 (112)
T PF00072_consen 73 PIIVVTDED 81 (112)
T ss_dssp EEEEEESST
T ss_pred cEEEecCCC
Confidence 999987554
No 420
>TIGR01465 cobM_cbiF precorrin-4 C11-methyltransferase. This model represents precorrin-4 C11-methyltransferase, one of two methyltransferases commonly referred to as precorrin-3 methylase (the other is precorrin-3B C17-methyltransferase, EC 2.1.1.131). This enzyme participates in the pathway toward the biosynthesis of cobalamin and related products.
Probab=21.84 E-value=3e+02 Score=27.49 Aligned_cols=54 Identities=17% Similarity=0.147 Sum_probs=36.0
Q ss_pred HHHHHHHHHHcCCeeEEEEcCCCCCc--hHHHHHHHHHhCCCceEEEe-chHHHHHhh
Q 006577 467 VEMILQHAHELGKQFRVVIVDSRPKH--EGKLLLRRLVRKGLSCTYTH-INAISYIIH 521 (640)
Q Consensus 467 V~~vL~~A~e~Gk~f~ViV~ESRP~~--eG~~La~eL~~~GI~vTlI~-DsAv~~iM~ 521 (640)
+...|....++|++ -|+++-..|.+ -|..+.+.|.+.|+++++|+ .|++.+++.
T Consensus 60 ~~~~i~~~~~~g~~-V~~L~~GDP~~~~~~~~l~~~~~~~g~~veviPGiSS~~aa~a 116 (229)
T TIGR01465 60 IVDIMSDAHREGKL-VVRLHTGDPSIYGAIAEQMQLLEALGIPYEVVPGVSSFFAAAA 116 (229)
T ss_pred HHHHHHHHHHCCCe-EEEEeCcCccccccHHHHHHHHHHCCCCEEEECChhHHHHHHH
Confidence 33444444455654 45555788854 45666788888899999998 667666665
No 421
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=21.79 E-value=2.7e+02 Score=32.81 Aligned_cols=34 Identities=26% Similarity=0.239 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhccCCCEEEeecCcHHHHHHHHHH
Q 006577 441 DRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHA 474 (640)
Q Consensus 441 ~~~Ia~~a~~~I~dgdvILT~g~SstV~~vL~~A 474 (640)
.+.+-...+.+..+|-++.||+.++.|..-|..|
T Consensus 185 ~~~~~~~l~~~~~~~~~~~t~t~a~~vr~~l~~~ 218 (662)
T PRK01747 185 SPNLFNALARLARPGATLATFTSAGFVRRGLQEA 218 (662)
T ss_pred cHHHHHHHHHHhCCCCEEEEeehHHHHHHHHHHc
Confidence 3445555566788899999999999998887765
No 422
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=21.76 E-value=3.8e+02 Score=29.66 Aligned_cols=96 Identities=16% Similarity=0.180 Sum_probs=60.4
Q ss_pred CCCEEEeecCcHH---HHHHHHHHHHcCC-eeEEEEcCCCCCchHHHHHHHHHhCC-CceEEEechHHHHHhhhccEEEE
Q 006577 454 DGDVLLTYGSSSA---VEMILQHAHELGK-QFRVVIVDSRPKHEGKLLLRRLVRKG-LSCTYTHINAISYIIHEVTRVFL 528 (640)
Q Consensus 454 dgdvILT~g~Sst---V~~vL~~A~e~Gk-~f~ViV~ESRP~~eG~~La~eL~~~G-I~vTlI~DsAv~~iM~~VdkVlv 528 (640)
+-.+||+.|-|.- +..++..+..... ++.|+..-.+-.++ ++-..+.+.| +.+....|+ +..+|+.+|.|
T Consensus 182 ~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~~~~v~~~~G~~~~~--~~~~~~~~~~~~~v~~f~~d-m~~~~~~ADLv-- 256 (357)
T COG0707 182 DKKTILVTGGSQGAKALNDLVPEALAKLANRIQVIHQTGKNDLE--ELKSAYNELGVVRVLPFIDD-MAALLAAADLV-- 256 (357)
T ss_pred CCcEEEEECCcchhHHHHHHHHHHHHHhhhCeEEEEEcCcchHH--HHHHHHhhcCcEEEeeHHhh-HHHHHHhccEE--
Confidence 5579999998853 4556666654433 46666554443322 3335555666 555555566 56667788886
Q ss_pred cceeEecCCCeecccchHHHHHHHhhCCCcEEEecccc
Q 006577 529 GASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAY 566 (640)
Q Consensus 529 GADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~aety 566 (640)
+.|.|...++=++ ..++|.+++=.-+
T Consensus 257 -----------IsRaGa~Ti~E~~-a~g~P~IliP~p~ 282 (357)
T COG0707 257 -----------ISRAGALTIAELL-ALGVPAILVPYPP 282 (357)
T ss_pred -----------EeCCcccHHHHHH-HhCCCEEEeCCCC
Confidence 4677877777644 4799999874443
No 423
>PF06026 Rib_5-P_isom_A: Ribose 5-phosphate isomerase A (phosphoriboisomerase A); InterPro: IPR004788 Ribose 5-phosphate isomerase, also known as phosphoriboisomerase, catalyses the reversible conversion of D-ribose 5-phosphate to D-ribulose 5-phosphate, the first step in the non-oxidative branch of the pentose phosphate pathway []. This reaction enables ribose to be synthesized from sugars, as well as the recycling of sugars during the degradation of nucleotides. There are two unrelated types of ribose 5-phosphate isomerases: type A (RpiA) is the most common and is found in most organisms, while type B (RpiB) is restricted to specific eukaryotic and prokaryotic species. Escherichia coli produces both RpiA and RpiB (also known as AlsB), although RpiA accounts for 99% of total RPI enzymes []. This entry represents type A (RpiA) enzymes found in eukaryotes (plants, Metazoa and fungi), bacteria and archaea.; GO: 0004751 ribose-5-phosphate isomerase activity, 0009052 pentose-phosphate shunt, non-oxidative branch; PDB: 1M0S_B 3HHE_B 1LKZ_B 1KS2_A 1O8B_A 3UW1_A 3U7J_A 3L7O_A 1XTZ_A 1UJ6_A ....
Probab=21.60 E-value=1.7e+02 Score=29.22 Aligned_cols=79 Identities=11% Similarity=0.029 Sum_probs=49.4
Q ss_pred HHHHHHhCCCceEEEechHHHHHhhhccEEEEcceeEecCCCeecccchHHHH-HHHhhCCCcEEEecccccccccccCC
Q 006577 497 LLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVA-MVAYGFHIPVLVCCEAYKFHERVQLD 575 (640)
Q Consensus 497 La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGADaIlaNG~VvNKiGT~~lA-laAk~~~VPVyV~aetyKf~~~~~~d 575 (640)
....+.+.||+++-+.+- .++|..|=|||-|-.|..++--=|...+= =+-.....-++++++..|+.++.- .
T Consensus 10 T~~~a~~~Gi~l~~~~~~------~~iDl~iDGaDevd~~l~lIKGgGgallrEKiva~~a~~~I~i~DesK~v~~Lg-~ 82 (173)
T PF06026_consen 10 TELLARKLGIPLVDLDEV------DRIDLAIDGADEVDPDLNLIKGGGGALLREKIVASAAKRFIIIVDESKLVEKLG-K 82 (173)
T ss_dssp HHHHHHHTT-EBE-GGGS------SSEEEEEEE-SEEETTSEEE--TTS-HHHHHHHHHTEEEEEEEEEGGGBESSBT-S
T ss_pred HHHHHHHcCCcEEccccC------CcceEEEECchhhcCCCCEEECCCccchhhhhHHHhhceEEEEECCCcEeeEcC-C
Confidence 345667789988766553 68999999999999998888555543221 022234556788899999988654 3
Q ss_pred Ccccccc
Q 006577 576 SICSNEL 582 (640)
Q Consensus 576 s~i~nEl 582 (640)
..++.|.
T Consensus 83 ~plPvEV 89 (173)
T PF06026_consen 83 FPLPVEV 89 (173)
T ss_dssp S-EEEEE
T ss_pred CceeEEE
Confidence 4455554
No 424
>PRK02948 cysteine desulfurase; Provisional
Probab=21.48 E-value=1e+03 Score=25.43 Aligned_cols=103 Identities=12% Similarity=0.111 Sum_probs=48.3
Q ss_pred CCCEEEeecCcHHHHHHHHHHHHc--CCeeEEEEcCCCCCchHHHH-HHHHHhCCCceEEEe-ch-------HHHHHhhh
Q 006577 454 DGDVLLTYGSSSAVEMILQHAHEL--GKQFRVVIVDSRPKHEGKLL-LRRLVRKGLSCTYTH-IN-------AISYIIHE 522 (640)
Q Consensus 454 dgdvILT~g~SstV~~vL~~A~e~--Gk~f~ViV~ESRP~~eG~~L-a~eL~~~GI~vTlI~-Ds-------Av~~iM~~ 522 (640)
...+++|-|-+.....++..+.+. +..-+|++.+ ..+..-.. .+.+...|+++..+. |. .+...+.+
T Consensus 60 ~~~i~~~~g~t~a~~~~~~~~~~~~~~~g~~vv~~~--~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~ 137 (381)
T PRK02948 60 EQGIYFTSGGTESNYLAIQSLLNALPQNKKHIITTP--MEHASIHSYFQSLESQGYTVTEIPVDKSGLIRLVDLERAITP 137 (381)
T ss_pred CCeEEEeCcHHHHHHHHHHHHHHhccCCCCEEEECC--cccHHHHHHHHHHHhCCCEEEEEeeCCCCCCCHHHHHHhcCC
Confidence 345666655555544444444321 1223455432 22222222 245566798888875 21 12222222
Q ss_pred ccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 523 VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 523 VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
-+++|+=...-...|.+.. + -.|+-+|+.+++.|+|
T Consensus 138 ~~~lv~~~~~~n~tG~~~~-~--~~I~~l~~~~~~~viv 173 (381)
T PRK02948 138 DTVLASIQHANSEIGTIQP-I--AEIGALLKKYNVLFHS 173 (381)
T ss_pred CCEEEEEECCcCCcEeehh-H--HHHHHHHHHcCCEEEE
Confidence 1233322222223444433 2 2466778889987766
No 425
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=21.43 E-value=4.8e+02 Score=21.64 Aligned_cols=53 Identities=19% Similarity=0.262 Sum_probs=31.5
Q ss_pred EEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCc----h-HHHHHHHHHhCCCceEE
Q 006577 458 LLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKH----E-GKLLLRRLVRKGLSCTY 510 (640)
Q Consensus 458 ILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~----e-G~~La~eL~~~GI~vTl 510 (640)
|+.+|.+-.-..+-..+.+.|+.++++.-..++.. + ...+.+.|.+.||++.+
T Consensus 2 vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~ 59 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHT 59 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEE
T ss_pred EEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEe
Confidence 66777776655666666667765555554444441 1 23334788888876543
No 426
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=21.28 E-value=4.2e+02 Score=28.34 Aligned_cols=16 Identities=19% Similarity=0.202 Sum_probs=11.6
Q ss_pred HHHHHHHhhCCCcEEE
Q 006577 546 ACVAMVAYGFHIPVLV 561 (640)
Q Consensus 546 ~~lAlaAk~~~VPVyV 561 (640)
-.|+-+|++|++.+++
T Consensus 190 ~~i~~la~~~~~~li~ 205 (393)
T TIGR01822 190 DEICDLADKYDALVMV 205 (393)
T ss_pred HHHHHHHHHcCCEEEE
Confidence 3566678888887665
No 427
>PRK00208 thiG thiazole synthase; Reviewed
Probab=21.15 E-value=3.8e+02 Score=28.61 Aligned_cols=66 Identities=14% Similarity=0.143 Sum_probs=40.9
Q ss_pred HHHHHhCCCceE-EEechHH-HHHhh--hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEecccc
Q 006577 498 LRRLVRKGLSCT-YTHINAI-SYIIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAY 566 (640)
Q Consensus 498 a~eL~~~GI~vT-lI~DsAv-~~iM~--~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~aety 566 (640)
+++|.+.|+.+- |++|+-+ +..+. .++.|..-+.-|-+|-++.| -+.+..+.+..++||++=+.-.
T Consensus 116 a~~L~~~Gf~vlpyc~~d~~~ak~l~~~G~~~vmPlg~pIGsg~gi~~---~~~i~~i~e~~~vpVIveaGI~ 185 (250)
T PRK00208 116 AEILVKEGFVVLPYCTDDPVLAKRLEEAGCAAVMPLGAPIGSGLGLLN---PYNLRIIIEQADVPVIVDAGIG 185 (250)
T ss_pred HHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeCCCCcCCCCCCCCCC---HHHHHHHHHhcCCeEEEeCCCC
Confidence 478888888888 7776543 33333 34555444444444544545 5567777777899998865543
No 428
>TIGR01694 MTAP 5'-deoxy-5'-methylthioadenosine phosphorylase. In between the trusted and noise cutoffs are: 1) several archaeal sequences which appear to contain several residues characteristic of phosphorylases which act on guanosine or inosine (according to the crystal structure of MTAP and alignments). In any case, these residues are not conserved. 2) sequences from Mycobacterium tuberculosis and Streptomyces coelicolor which have better, although not perfect retention of the active site residues, but considering the general observation that bacteria utilize the MTA/SAH nucleotidase enzyme and a kinase to do this reaction, these have been excluded pending stronger evidence of their function, and 3) a sequence from Drosophila which appears to be a recent divergence (long branch in neighbor-joining trees) and lacks some of the conserved active site residues.
Probab=21.14 E-value=4.4e+02 Score=27.11 Aligned_cols=29 Identities=17% Similarity=0.020 Sum_probs=22.0
Q ss_pred cceeEecCCCeecccchHHHHHHHhhCCCcEEEeccc
Q 006577 529 GASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEA 565 (640)
Q Consensus 529 GADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~aet 565 (640)
|||+|=.- ++.++.+|+++|+|+.+++--
T Consensus 175 Ga~aVeME--------~aa~~~vA~~~gv~~~~i~~V 203 (241)
T TIGR01694 175 GADIVGMT--------GVPEAVLARELELCYATLALV 203 (241)
T ss_pred CCeEEecc--------HHHHHHHHHHCCCCEEEEEEE
Confidence 66666544 577999999999999987543
No 429
>PRK09148 aminotransferase; Validated
Probab=21.10 E-value=6.1e+02 Score=27.69 Aligned_cols=103 Identities=14% Similarity=0.058 Sum_probs=55.5
Q ss_pred ccCC-CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEech-------HHHHHh---
Q 006577 452 IRDG-DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN-------AISYII--- 520 (640)
Q Consensus 452 I~dg-dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds-------Av~~iM--- 520 (640)
+... .+++|.|.+..+..++....+.|. +|++. .|.+.+..... ...|+.+..+... .+-..+
T Consensus 89 ~~~~~~I~it~G~~~al~~~~~~l~~~gd--~Vl~~--~P~y~~~~~~~--~~~g~~v~~v~~~~~~~~~~~l~~~~~~~ 162 (405)
T PRK09148 89 LNPDTQVVATLGSKEGFANMAQAITAPGD--VILCP--NPSYPIHAFGF--IMAGGVIRSVPAEPDEEFFPALERAVRHS 162 (405)
T ss_pred CCCCCcEEEcCChHHHHHHHHHHhcCCCC--EEEEc--CCCCcccHHHH--HhcCCEEEEEeCCCCCCCccCHHHHHhhc
Confidence 3334 689998888877666665544443 44443 47776654433 3468877666421 112222
Q ss_pred -hhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 521 -HEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 521 -~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
.+...|++-- -=-..|.+++.-=-..++-+|+.|++.+++
T Consensus 163 ~~~~~~v~l~~-P~NPtG~~~s~~~l~~l~~~a~~~~~~ii~ 203 (405)
T PRK09148 163 IPKPIALIVNY-PSNPTAYVADLDFYKDVVAFAKKHDIIILS 203 (405)
T ss_pred cccceEEEEeC-CCCCCCcCCCHHHHHHHHHHHHHcCeEEEE
Confidence 2333343321 001335555544445666778899886554
No 430
>TIGR02208 lipid_A_msbB lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase. This family consists of MsbB in E. coli and closely related proteins in other species. MsbB is homologous to HtrB (TIGR02207) and acts immediately after it in the biosynthesis of KDO-2 lipid A (also called Re LPS and Re endotoxin). These two enzymes act after creation of KDO-2 lipid IV-A by addition of the KDO sugars.
Probab=21.00 E-value=1e+03 Score=25.24 Aligned_cols=105 Identities=11% Similarity=0.053 Sum_probs=58.9
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcC-CCCCchHHHHHHHHHh-CCCceEEEechHHHHHhh---hccEEEEcc
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVD-SRPKHEGKLLLRRLVR-KGLSCTYTHINAISYIIH---EVTRVFLGA 530 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~E-SRP~~eG~~La~eL~~-~GI~vTlI~DsAv~~iM~---~VdkVlvGA 530 (640)
-+|+.-++-+..+-.-......|..+.++.-. ..|.. .++..++.+ .|+.+. ...+++-.+++ +-..|.+-+
T Consensus 123 gvi~~t~H~gnwE~~~~~~~~~~~~~~~v~r~~~n~~~--d~~~~~~R~~~g~~~i-~~~~~~r~i~~aLk~g~~v~il~ 199 (305)
T TIGR02208 123 PVIFLVPHGWAIDYAGLRLASQGLPMVTMFNNHKNPLF--DWLWNRVRSRFGGHVY-AREAGIKALLASLKRGESGYYLP 199 (305)
T ss_pred CEEEEecchhHHHHHHHHHHhcCCCceEEeeCCCCHHH--HHHHHHHHhcCCCcee-cChhhHHHHHHHHhCCCeEEEeC
Confidence 46666676665543222222345555544322 22333 334455533 455543 24456666655 556777778
Q ss_pred eeEe--cCCCeecccch-----HHHHHHHhhCCCcEEEec
Q 006577 531 SSVL--SNGTVCSRVGT-----ACVAMVAYGFHIPVLVCC 563 (640)
Q Consensus 531 DaIl--aNG~VvNKiGT-----~~lAlaAk~~~VPVyV~a 563 (640)
|.-. .+|-.+.=.|. -..|++|+.+|.||+.+.
T Consensus 200 Dq~~~~~~gv~v~FfG~~a~t~~~~a~LA~~~~apvv~~~ 239 (305)
T TIGR02208 200 DEDHGPEQSVFVPFFATYKATLPVVGRLAKAGNAQVVPVF 239 (305)
T ss_pred CCCCCCCCCeEeccCCCcchhHHHHHHHHHhcCCeEEEEE
Confidence 8765 45655555553 345689999999999653
No 431
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=21.00 E-value=1.1e+03 Score=26.08 Aligned_cols=109 Identities=15% Similarity=0.122 Sum_probs=67.4
Q ss_pred HHHHHHHHhccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCC------CCch--------H----HHHHHHHHhC
Q 006577 443 VIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSR------PKHE--------G----KLLLRRLVRK 504 (640)
Q Consensus 443 ~Ia~~a~~~I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESR------P~~e--------G----~~La~eL~~~ 504 (640)
.++..+..+|. +.+||..|..++-..++..+...|.. +++++|.. -..| | ..+++.|.+.
T Consensus 30 ~~g~~~q~~l~-~~~VliiG~GglG~~v~~~La~~Gvg-~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~ 107 (370)
T PRK05600 30 GFGIEQQERLH-NARVLVIGAGGLGCPAMQSLASAGVG-TITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEI 107 (370)
T ss_pred hhCHHHHHHhc-CCcEEEECCCHHHHHHHHHHHHcCCC-EEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHH
Confidence 35666666665 46799999998877777777666753 33433321 1111 2 1223566654
Q ss_pred C--CceEEEe----chHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEe
Q 006577 505 G--LSCTYTH----INAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (640)
Q Consensus 505 G--I~vTlI~----DsAv~~iM~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~ 562 (640)
. ++++.+. ...+..+++++|.||-+.|.+. --+.+.-+|..+++|++-.
T Consensus 108 np~v~i~~~~~~i~~~~~~~~~~~~DlVid~~Dn~~---------~r~~in~~~~~~~iP~v~~ 162 (370)
T PRK05600 108 QPDIRVNALRERLTAENAVELLNGVDLVLDGSDSFA---------TKFLVADAAEITGTPLVWG 162 (370)
T ss_pred CCCCeeEEeeeecCHHHHHHHHhCCCEEEECCCCHH---------HHHHHHHHHHHcCCCEEEE
Confidence 3 5555443 2234456789999998888643 2345667889999998854
No 432
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=21.00 E-value=6.7e+02 Score=26.01 Aligned_cols=114 Identities=13% Similarity=0.134 Sum_probs=65.0
Q ss_pred HHHHHhccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCC------Cc--------hH----HHHHHHHHhCC--
Q 006577 446 KHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRP------KH--------EG----KLLLRRLVRKG-- 505 (640)
Q Consensus 446 ~~a~~~I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP------~~--------eG----~~La~eL~~~G-- 505 (640)
+.+.+.|. +..||..|..++--.++..+...|.. +++++|..- .. -| ..|+++|.+.+
T Consensus 3 ~e~~~~L~-~~~VlVvG~GGvGs~va~~Lar~GVg-~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~ 80 (231)
T cd00755 3 EEGLEKLR-NAHVAVVGLGGVGSWAAEALARSGVG-KLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPE 80 (231)
T ss_pred HHHHHHHh-CCCEEEECCCHHHHHHHHHHHHcCCC-EEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCC
Confidence 34555564 36788889887765666666666754 333333211 11 12 23346666654
Q ss_pred CceEEEe-----chHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEecccc-cccc
Q 006577 506 LSCTYTH-----INAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAY-KFHE 570 (640)
Q Consensus 506 I~vTlI~-----DsAv~~iM~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~aety-Kf~~ 570 (640)
+.++.+. ++....+..+.|.||...|.+- . -..+.-.|+.+++||+.+...- |+++
T Consensus 81 ~~V~~~~~~i~~~~~~~l~~~~~D~VvdaiD~~~------~---k~~L~~~c~~~~ip~I~s~g~g~~~dp 142 (231)
T cd00755 81 CEVDAVEEFLTPDNSEDLLGGDPDFVVDAIDSIR------A---KVALIAYCRKRKIPVISSMGAGGKLDP 142 (231)
T ss_pred cEEEEeeeecCHhHHHHHhcCCCCEEEEcCCCHH------H---HHHHHHHHHHhCCCEEEEeCCcCCCCC
Confidence 4444443 3444444456898888776653 2 2345667899999999765543 3443
No 433
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=20.90 E-value=7.1e+02 Score=24.02 Aligned_cols=106 Identities=21% Similarity=0.180 Sum_probs=56.1
Q ss_pred CCEEEeecCcHHH-HHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEE-ec----hHHHHHhh-------
Q 006577 455 GDVLLTYGSSSAV-EMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT-HI----NAISYIIH------- 521 (640)
Q Consensus 455 gdvILT~g~SstV-~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI-~D----sAv~~iM~------- 521 (640)
+.+||..|.|+.+ ..+.+...++|. +|+++...+. ....+...+...|...+++ +| ..+..++.
T Consensus 5 ~~~ilItGasg~iG~~l~~~l~~~g~--~v~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (246)
T PRK05653 5 GKTALVTGASRGIGRAIALRLAADGA--KVVIYDSNEE-AAEALAAELRAAGGEARVLVFDVSDEAAVRALIEAAVEAFG 81 (246)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCChh-HHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 4578888877665 445555566654 4776665443 3344556666666555443 22 23333333
Q ss_pred hccEEEEcceeEecCCCe-------------ecccchHHHHHHH----hhCCCcEEEecc
Q 006577 522 EVTRVFLGASSVLSNGTV-------------CSRVGTACVAMVA----YGFHIPVLVCCE 564 (640)
Q Consensus 522 ~VdkVlvGADaIlaNG~V-------------vNKiGT~~lAlaA----k~~~VPVyV~ae 564 (640)
.+|.||..|-.... +.. .|-.|++.+.-.+ +..+++.+|+..
T Consensus 82 ~id~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~ii~~s 140 (246)
T PRK05653 82 ALDILVNNAGITRD-ALLPRMSEEDWDRVIDVNLTGTFNVVRAALPPMIKARYGRIVNIS 140 (246)
T ss_pred CCCEEEECCCcCCC-CChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEC
Confidence 35888777643221 111 3445666665444 244555555443
No 434
>PRK06835 DNA replication protein DnaC; Validated
Probab=20.90 E-value=4.4e+02 Score=28.80 Aligned_cols=14 Identities=29% Similarity=0.700 Sum_probs=10.3
Q ss_pred cCCCEEEeecCcHH
Q 006577 453 RDGDVLLTYGSSSA 466 (640)
Q Consensus 453 ~dgdvILT~g~Sst 466 (640)
..+..++-||.+++
T Consensus 181 ~~~~~Lll~G~~Gt 194 (329)
T PRK06835 181 KNNENLLFYGNTGT 194 (329)
T ss_pred ccCCcEEEECCCCC
Confidence 34577888888765
No 435
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=20.84 E-value=3.6e+02 Score=23.80 Aligned_cols=78 Identities=17% Similarity=0.198 Sum_probs=42.8
Q ss_pred HHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEcceeEecCCCeecccchHHHH
Q 006577 470 ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVA 549 (640)
Q Consensus 470 vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGADaIlaNG~VvNKiGT~~lA 549 (640)
++...+++..+++++++-..|. ++ +++...+|...=..+ -+..+|+.+|.++.-.+ .+. |+....
T Consensus 24 ~~~~l~~~~p~~~l~i~G~~~~----~l-~~~~~~~v~~~g~~~-e~~~~l~~~dv~l~p~~----~~~-----~~~~k~ 88 (135)
T PF13692_consen 24 ALERLKEKHPDIELIIIGNGPD----EL-KRLRRPNVRFHGFVE-ELPEILAAADVGLIPSR----FNE-----GFPNKL 88 (135)
T ss_dssp HHHHHHHHSTTEEEEEECESS-----HH-CCHHHCTEEEE-S-H-HHHHHHHC-SEEEE-BS----S-S-----CC-HHH
T ss_pred HHHHHHHHCcCEEEEEEeCCHH----HH-HHhcCCCEEEcCCHH-HHHHHHHhCCEEEEEee----CCC-----cCcHHH
Confidence 4555666667788888766555 22 222344554432233 57778889999986442 222 444555
Q ss_pred HHHhhCCCcEEEe
Q 006577 550 MVAYGFHIPVLVC 562 (640)
Q Consensus 550 laAk~~~VPVyV~ 562 (640)
+=+-.+|+|+++.
T Consensus 89 ~e~~~~G~pvi~~ 101 (135)
T PF13692_consen 89 LEAMAAGKPVIAS 101 (135)
T ss_dssp HHHHCTT--EEEE
T ss_pred HHHHHhCCCEEEC
Confidence 5666699999985
No 436
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=20.76 E-value=68 Score=33.97 Aligned_cols=86 Identities=21% Similarity=0.217 Sum_probs=56.0
Q ss_pred HHhccCCCEEEeecCcHHHH-HHHHHHHHcCCeeEEEEcCCCCCchHHHHH--H--HHHhCCCceEEEechHHHHHhhhc
Q 006577 449 VTKIRDGDVLLTYGSSSAVE-MILQHAHELGKQFRVVIVDSRPKHEGKLLL--R--RLVRKGLSCTYTHINAISYIIHEV 523 (640)
Q Consensus 449 ~~~I~dgdvILT~g~SstV~-~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La--~--eL~~~GI~vTlI~DsAv~~iM~~V 523 (640)
-.++.+|.+||-||+--.|. +-|.+ -| ..++..=..|...|.-+. . ++.-..++|-+|.|..++.--.-+
T Consensus 124 e~Lv~eGF~VlPY~~dD~v~arrLee---~G--caavMPl~aPIGSg~G~~n~~~l~iiie~a~VPviVDAGiG~pSdAa 198 (262)
T COG2022 124 EQLVKEGFVVLPYTTDDPVLARRLEE---AG--CAAVMPLGAPIGSGLGLQNPYNLEIIIEEADVPVIVDAGIGTPSDAA 198 (262)
T ss_pred HHHHhCCCEEeeccCCCHHHHHHHHh---cC--ceEeccccccccCCcCcCCHHHHHHHHHhCCCCEEEeCCCCChhHHH
Confidence 34678999999999987643 22332 23 456666677876665442 1 222345588889998877665555
Q ss_pred cEEEEcceeEecCCCe
Q 006577 524 TRVFLGASSVLSNGTV 539 (640)
Q Consensus 524 dkVlvGADaIlaNG~V 539 (640)
...=+|||+|+-|-.|
T Consensus 199 ~aMElG~DaVL~NTAi 214 (262)
T COG2022 199 QAMELGADAVLLNTAI 214 (262)
T ss_pred HHHhcccceeehhhHh
Confidence 5556888888888543
No 437
>PF02589 DUF162: Uncharacterised ACR, YkgG family COG1556; InterPro: IPR003741 This entry represents a domain found in lactate utilization proteins B (LutB) and C (LutC), as well as several uncharacterised proteins. Lactate utilization proteins B and C are involved in L-lactate degradation and allows cells to grow with lactate as the sole carbon source. LutB probably has a role as an electron transporter during oxidation of L-lactate.; PDB: 2G40_A.
Probab=20.75 E-value=68 Score=31.30 Aligned_cols=54 Identities=15% Similarity=0.106 Sum_probs=34.5
Q ss_pred HhhhccEEEEcce-eEecCCCeecccchHHHHHHHhhCCCcEEEeccccccccccc
Q 006577 519 IIHEVTRVFLGAS-SVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQ 573 (640)
Q Consensus 519 iM~~VdkVlvGAD-aIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~aetyKf~~~~~ 573 (640)
.+..+|..|.||+ +|..+|++++.-|...- -+....-.=++|+....|+.+...
T Consensus 81 ~~~~ad~gIt~a~~aIAetGtlvl~~~~~~~-r~~s~lP~~hi~vv~~~kIv~~l~ 135 (189)
T PF02589_consen 81 EAEDADVGITGANYAIAETGTLVLSSGPGNR-RAVSLLPPVHIVVVGASKIVPNLE 135 (189)
T ss_dssp HHHH-SEEEE--SEEETTTTEEEE---TTT--GGGGTSSSEEEEEEEGGGEESSHH
T ss_pred HHhcCCEEEECccHHHHhCCeEEEeCCCCCh-hhhhhCCCeEEEEEcHHHcCCCHH
Confidence 3457999999999 99999999999988776 223333344567788888877654
No 438
>PRK02186 argininosuccinate lyase; Provisional
Probab=20.72 E-value=2.7e+02 Score=34.30 Aligned_cols=20 Identities=15% Similarity=0.225 Sum_probs=9.3
Q ss_pred HHHHHHHHcCCeeEEEEcCCCC
Q 006577 469 MILQHAHELGKQFRVVIVDSRP 490 (640)
Q Consensus 469 ~vL~~A~e~Gk~f~ViV~ESRP 490 (640)
.++..|++. .++|+++.+.|
T Consensus 18 ~l~~aa~~l--G~~vi~v~~~~ 37 (887)
T PRK02186 18 LLLRKALLR--GFTPYFLTANR 37 (887)
T ss_pred HHHHHHHHc--CCEEEEEeCCc
Confidence 344455443 35555554443
No 439
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=20.70 E-value=6.7e+02 Score=31.71 Aligned_cols=98 Identities=15% Similarity=0.241 Sum_probs=63.9
Q ss_pred CCCEEEeec--CcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEec-----hHHHHHhh--hcc
Q 006577 454 DGDVLLTYG--SSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI-----NAISYIIH--EVT 524 (640)
Q Consensus 454 dgdvILT~g--~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D-----sAv~~iM~--~Vd 524 (640)
.|.++++.+ .-.-++.+.+..++ ..|++|.++. +++.|.+.||+|+.+.. ..+--+++ ++|
T Consensus 937 ~~~~lisv~~~dK~~l~~~a~~l~~--~G~~i~aT~g--------T~~~l~~~gi~~~~v~~~~~~~~~i~~~i~~~~id 1006 (1066)
T PRK05294 937 SGTVFLSVRDRDKEEVVELAKRLLE--LGFKILATSG--------TAKFLREAGIPVELVNKVHEGRPHIVDLIKNGEID 1006 (1066)
T ss_pred CCeEEEEeccccHHHHHHHHHHHHH--cCCEEEEccH--------HHHHHHHCCCeeEEEeeccCcCccHHHHHHcCCeE
Confidence 345666666 33445556666665 4588888753 56889999999988763 22333333 799
Q ss_pred EEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEeccccc
Q 006577 525 RVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYK 567 (640)
Q Consensus 525 kVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~aetyK 567 (640)
+||--.+ |.- .....|.+=-+|-.+|||++-..++.+
T Consensus 1007 lvIn~~~-----~~~-~~~~g~~iRr~Av~~~ip~~T~~~~a~ 1043 (1066)
T PRK05294 1007 LVINTPT-----GRQ-AIRDGFSIRRAALEYKVPYITTLAGAR 1043 (1066)
T ss_pred EEEECCC-----Ccc-cccccHHHHHHHHHcCCCEEecHHHHH
Confidence 9986543 321 233567788899999999996555443
No 440
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=20.65 E-value=3.4e+02 Score=26.23 Aligned_cols=73 Identities=14% Similarity=0.187 Sum_probs=46.1
Q ss_pred CCCEEEeec--CcHHHHHHHHHHHHcCCeeEEEEcCC--CCCc-hHHHHH-HHHHhCCCceEEEechHHHHHhhhccEEE
Q 006577 454 DGDVLLTYG--SSSAVEMILQHAHELGKQFRVVIVDS--RPKH-EGKLLL-RRLVRKGLSCTYTHINAISYIIHEVTRVF 527 (640)
Q Consensus 454 dgdvILT~g--~SstV~~vL~~A~e~Gk~f~ViV~ES--RP~~-eG~~La-~eL~~~GI~vTlI~DsAv~~iM~~VdkVl 527 (640)
+|-+|.-.| ++.++..++..+..-|..+.++..+. -|.. +-...+ ....+.|..+++. ..+-..++.+|.|.
T Consensus 1 ~gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~--~~~~e~l~~aDvvy 78 (158)
T PF00185_consen 1 KGLKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITIT--DDIEEALKGADVVY 78 (158)
T ss_dssp TTEEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEE--SSHHHHHTT-SEEE
T ss_pred CCCEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEE--eCHHHhcCCCCEEE
Confidence 356677777 47888888887877887777776666 2321 222233 3445568777777 45666777777765
Q ss_pred E
Q 006577 528 L 528 (640)
Q Consensus 528 v 528 (640)
.
T Consensus 79 ~ 79 (158)
T PF00185_consen 79 T 79 (158)
T ss_dssp E
T ss_pred E
Confidence 4
No 441
>PRK11263 cardiolipin synthase 2; Provisional
Probab=20.63 E-value=4e+02 Score=29.96 Aligned_cols=49 Identities=14% Similarity=0.181 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEec
Q 006577 465 SAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI 513 (640)
Q Consensus 465 stV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D 513 (640)
..+...|..|.++|.+++|++..-.-......+.++|.+.||++.+...
T Consensus 48 ~~l~~aL~~aa~rGV~Vril~D~~gs~~~~~~~~~~L~~aGv~v~~~~p 96 (411)
T PRK11263 48 KQLHAALLAAAQRGVKVEVLVDGYGSPDLSDEFVNELTAAGVRFRYFDP 96 (411)
T ss_pred HHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHCCeEEEEeCC
Confidence 4577788888889988888876421112356678999999999987643
No 442
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=20.58 E-value=1.1e+03 Score=25.51 Aligned_cols=98 Identities=13% Similarity=0.034 Sum_probs=52.7
Q ss_pred EEeecCcHHHHHHHHHHH--HcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEe----ch------HHHHHhh---h
Q 006577 458 LLTYGSSSAVEMILQHAH--ELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH----IN------AISYIIH---E 522 (640)
Q Consensus 458 ILT~g~SstV~~vL~~A~--e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~----Ds------Av~~iM~---~ 522 (640)
|+|.|.+..+..++.... +.|. +|+ +++ |.+.+...+.+ ..|+.+..+. |. .+-..+. .
T Consensus 98 ~iT~Ga~~al~~~~~~l~~~~pGd--~Vl-v~~-P~y~~~~~~~~--~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~~ 171 (396)
T PRK09257 98 VQTPGGTGALRVGADFLKRAFPDA--KVW-VSD-PTWPNHRAIFE--AAGLEVKTYPYYDAATKGLDFDAMLADLSQAPA 171 (396)
T ss_pred EecCCccHHHHHHHHHHHHhCCCC--eEE-ECC-CCcccHHHHHH--HcCCcEEEEeccccccCccCHHHHHHHHHhCCC
Confidence 788888887666553322 3443 333 333 77776654433 3676666553 11 1212221 1
Q ss_pred ccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 523 VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 523 VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
.+++++=..-=-.-|.++++-=-..|+-+|++|++.++.
T Consensus 172 ~~~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~ 210 (396)
T PRK09257 172 GDVVLLHGCCHNPTGADLTPEQWDELAELLKERGLIPFL 210 (396)
T ss_pred CCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEE
Confidence 245544333333445555555556777788999987664
No 443
>cd05569 PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-p
Probab=20.58 E-value=2.6e+02 Score=24.93 Aligned_cols=71 Identities=14% Similarity=0.060 Sum_probs=43.2
Q ss_pred EEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHH-------HHhhhccEEEEc
Q 006577 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAIS-------YIIHEVTRVFLG 529 (640)
Q Consensus 457 vILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~-------~iM~~VdkVlvG 529 (640)
.++|.|-++.+..+|-.- .|.+.+.+.|+.+.+..-+..+ .....+|.||+-
T Consensus 2 ~~i~ac~~G~a~s~laa~---------------------~L~~aa~~~g~~~~ve~~~~~g~~~~l~~~~i~~Ad~vi~~ 60 (96)
T cd05569 2 VAVTACPTGIAHTYMAAE---------------------ALEKAAKKLGWEIKVETQGSLGIENELTAEDIAEADAVILA 60 (96)
T ss_pred EEEEECCCchhHHHHHHH---------------------HHHHHHHHCCCeEEEEEecCcCccCcCCHHHHhhCCEEEEe
Confidence 467778777665544221 2345666677777765444432 445689999988
Q ss_pred ceeEecCCCeecccchHHHHHHHhhCCCcEEEec
Q 006577 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (640)
Q Consensus 530 ADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~a 563 (640)
+|.-..+ ++.-++|+|-..
T Consensus 61 ~~~~~~~---------------~rf~gk~v~~~~ 79 (96)
T cd05569 61 ADVPVDD---------------ERFAGKRVYEVS 79 (96)
T ss_pred cCCCCch---------------hhhCCCeEEEec
Confidence 8765322 455677777653
No 444
>PLN02427 UDP-apiose/xylose synthase
Probab=20.51 E-value=3.8e+02 Score=28.88 Aligned_cols=103 Identities=7% Similarity=0.024 Sum_probs=58.8
Q ss_pred CEEEeecCcHHHHH-HHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCC-----CceEEEe-----chHHHHHhhhcc
Q 006577 456 DVLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKG-----LSCTYTH-----INAISYIIHEVT 524 (640)
Q Consensus 456 dvILT~g~SstV~~-vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~G-----I~vTlI~-----DsAv~~iM~~Vd 524 (640)
.+||..|-++.+=. +++.+.++| ..+|++++-++.. ...|...+ -.++++. ...+..+++.+|
T Consensus 15 ~~VlVTGgtGfIGs~lv~~L~~~~-g~~V~~l~r~~~~-----~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d 88 (386)
T PLN02427 15 LTICMIGAGGFIGSHLCEKLMTET-PHKVLALDVYNDK-----IKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMAD 88 (386)
T ss_pred cEEEEECCcchHHHHHHHHHHhcC-CCEEEEEecCchh-----hhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCC
Confidence 47888898887755 444455442 2577777643321 11222211 1244432 234566778899
Q ss_pred EEEEcceeEecCC--------CeecccchHHHHHHHhhCCCcEEEecc
Q 006577 525 RVFLGASSVLSNG--------TVCSRVGTACVAMVAYGFHIPVLVCCE 564 (640)
Q Consensus 525 kVlvGADaIlaNG--------~VvNKiGT~~lAlaAk~~~VPVyV~ae 564 (640)
.||=-|-.+.... -..|-.||..+.-+|++.+..|+.+..
T Consensus 89 ~ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~~r~v~~SS 136 (386)
T PLN02427 89 LTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFST 136 (386)
T ss_pred EEEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcCCEEEEEee
Confidence 8887663221111 125778999888889888866665543
No 445
>PLN02686 cinnamoyl-CoA reductase
Probab=20.45 E-value=7e+02 Score=26.97 Aligned_cols=109 Identities=13% Similarity=0.084 Sum_probs=60.1
Q ss_pred ccCCCEEEeecCcHHHHH-HHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhC---C---CceEEE----ec-hHHHHH
Q 006577 452 IRDGDVLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRK---G---LSCTYT----HI-NAISYI 519 (640)
Q Consensus 452 I~dgdvILT~g~SstV~~-vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~---G---I~vTlI----~D-sAv~~i 519 (640)
...+.+||+.|-++.+=. +.+.+.++|- +|+++...+ ..-..+ ..|... + -.+.++ .| ..+..+
T Consensus 50 ~~~~k~VLVTGatGfIG~~lv~~L~~~G~--~V~~~~r~~-~~~~~l-~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~ 125 (367)
T PLN02686 50 DAEARLVCVTGGVSFLGLAIVDRLLRHGY--SVRIAVDTQ-EDKEKL-REMEMFGEMGRSNDGIWTVMANLTEPESLHEA 125 (367)
T ss_pred CCCCCEEEEECCchHHHHHHHHHHHHCCC--EEEEEeCCH-HHHHHH-HHHhhhccccccCCceEEEEcCCCCHHHHHHH
Confidence 345778999998887654 4455556664 555432111 111111 333211 1 123332 33 235567
Q ss_pred hhhccEEEEcceeEecCCC---------eecccchHHHHHHHhhC-CCcEEEeccc
Q 006577 520 IHEVTRVFLGASSVLSNGT---------VCSRVGTACVAMVAYGF-HIPVLVCCEA 565 (640)
Q Consensus 520 M~~VdkVlvGADaIlaNG~---------VvNKiGT~~lAlaAk~~-~VPVyV~aet 565 (640)
+..+|.|| ..+++..+++ -+|-.||..+.-+|+.. +|+=+|.+.+
T Consensus 126 i~~~d~V~-hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~~~v~r~V~~SS 180 (367)
T PLN02686 126 FDGCAGVF-HTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRTESVRKCVFTSS 180 (367)
T ss_pred HHhccEEE-ecCeeecccccccccchhhhhhHHHHHHHHHHHHhcCCccEEEEecc
Confidence 78899888 5556554433 14667888888888875 7875554444
No 446
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=20.45 E-value=5.8e+02 Score=26.10 Aligned_cols=88 Identities=19% Similarity=0.252 Sum_probs=56.3
Q ss_pred hccCCCEEEeecCc-HHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHH-HHHHhCCCceEEEechHHHHHhhh---ccE
Q 006577 451 KIRDGDVLLTYGSS-SAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL-RRLVRKGLSCTYTHINAISYIIHE---VTR 525 (640)
Q Consensus 451 ~I~dgdvILT~g~S-stV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La-~eL~~~GI~vTlI~DsAv~~iM~~---Vdk 525 (640)
-+++|+.++.+|.. ++|- +.-| ..+..-+||.+|..+. ..+++ +.+.+.|++-..+.-.-+..++++ .|.
T Consensus 31 ~~~~g~~l~DIGaGtGsi~--iE~a-~~~p~~~v~AIe~~~~--a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~da 105 (187)
T COG2242 31 RPRPGDRLWDIGAGTGSIT--IEWA-LAGPSGRVIAIERDEE--ALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDA 105 (187)
T ss_pred CCCCCCEEEEeCCCccHHH--HHHH-HhCCCceEEEEecCHH--HHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCE
Confidence 45789999999874 4432 2222 3467789999998764 45566 788889997666666666666553 555
Q ss_pred EEEcceeEecCCCeecccchHHHHHH
Q 006577 526 VFLGASSVLSNGTVCSRVGTACVAMV 551 (640)
Q Consensus 526 VlvGADaIlaNG~VvNKiGT~~lAla 551 (640)
+|+| |+ .+--+-+..++.
T Consensus 106 iFIG-------Gg-~~i~~ile~~~~ 123 (187)
T COG2242 106 IFIG-------GG-GNIEEILEAAWE 123 (187)
T ss_pred EEEC-------CC-CCHHHHHHHHHH
Confidence 5554 55 444444444443
No 447
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=20.44 E-value=6.4e+02 Score=27.44 Aligned_cols=94 Identities=22% Similarity=0.356 Sum_probs=47.2
Q ss_pred CCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEec----------hHHHHHhh-h
Q 006577 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI----------NAISYIIH-E 522 (640)
Q Consensus 454 dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D----------sAv~~iM~-~ 522 (640)
..++|+|-|.+..+..++....+.|. +|++. +|.+.+... .+...|+.+.++.. ..+-..+. +
T Consensus 96 ~~~ii~t~G~t~al~~~~~~l~~~gd--~Vlv~--~p~y~~~~~--~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 169 (403)
T TIGR01265 96 ADDVVLTSGCSQAIEICIEALANPGA--NILVP--RPGFPLYDT--RAAFSGLEVRLYDLLPEKDWEIDLDGLEALADEK 169 (403)
T ss_pred HHHEEEecChHHHHHHHHHHhCCCCC--EEEEe--CCCchhHHH--HHHHcCCEEEEecCCcccCCccCHHHHHHHhCcC
Confidence 34567777666665555554433343 34443 355554332 23445776665531 11111111 3
Q ss_pred ccEEEEcceeEecCCCeecccchH-------HHHHHHhhCCCcEEE
Q 006577 523 VTRVFLGASSVLSNGTVCSRVGTA-------CVAMVAYGFHIPVLV 561 (640)
Q Consensus 523 VdkVlvGADaIlaNG~VvNKiGT~-------~lAlaAk~~~VPVyV 561 (640)
..+|++ .|- -|..|+. .++-+|+.+++++++
T Consensus 170 ~~~v~i------~~p--~NPtG~~~~~~~~~~i~~~a~~~~~~ii~ 207 (403)
T TIGR01265 170 TVAIVV------INP--SNPCGSVFSRDHLQKIAEVARKLGIPIIA 207 (403)
T ss_pred ccEEEE------ecC--CCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 344433 221 2566654 355578888988776
No 448
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=20.38 E-value=4.6e+02 Score=27.64 Aligned_cols=103 Identities=12% Similarity=0.060 Sum_probs=56.2
Q ss_pred EEEeecCcHHHHHHHHHH-HHcCCeeEEEEcCCCCCchHHHHHHHHH-hCCCceEEEe---c-hHHHHHhhhccEEEEcc
Q 006577 457 VLLTYGSSSAVEMILQHA-HELGKQFRVVIVDSRPKHEGKLLLRRLV-RKGLSCTYTH---I-NAISYIIHEVTRVFLGA 530 (640)
Q Consensus 457 vILT~g~SstV~~vL~~A-~e~Gk~f~ViV~ESRP~~eG~~La~eL~-~~GI~vTlI~---D-sAv~~iM~~VdkVlvGA 530 (640)
+||..|-++.+-..|... .+. ..++|++++-++. .+ ..|. ..++...... | ..+..+++++|.||=-|
T Consensus 3 ~ilVtGatGfiGs~l~~~L~~~-~~~~V~~~~r~~~----~~-~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~d~ViH~a 76 (347)
T PRK11908 3 KVLILGVNGFIGHHLSKRILET-TDWEVYGMDMQTD----RL-GDLVNHPRMHFFEGDITINKEWIEYHVKKCDVILPLV 76 (347)
T ss_pred EEEEECCCcHHHHHHHHHHHhC-CCCeEEEEeCcHH----HH-HHhccCCCeEEEeCCCCCCHHHHHHHHcCCCEEEECc
Confidence 588888887766555443 332 2367887763221 11 2222 2344333211 2 23445677888887322
Q ss_pred eeEe-----cCCC---eecccchHHHHHHHhhCCCcEEEeccc
Q 006577 531 SSVL-----SNGT---VCSRVGTACVAMVAYGFHIPVLVCCEA 565 (640)
Q Consensus 531 DaIl-----aNG~---VvNKiGT~~lAlaAk~~~VPVyV~aet 565 (640)
-... .+-. -.|-.||..+.-+|+.++..|+.+...
T Consensus 77 a~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~~~~v~~SS~ 119 (347)
T PRK11908 77 AIATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFPSTS 119 (347)
T ss_pred ccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 2111 1111 125679999998999988887776544
No 449
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=20.35 E-value=5.5e+02 Score=28.21 Aligned_cols=48 Identities=19% Similarity=0.131 Sum_probs=33.9
Q ss_pred ecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEe
Q 006577 461 YGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH 512 (640)
Q Consensus 461 ~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~ 512 (640)
||+|..+...|+...+.-....|++=+.- ....++.|.+.|++...+.
T Consensus 118 hg~s~~~~~~i~~i~~~~p~~~vi~GnV~----t~e~a~~l~~aGad~I~V~ 165 (321)
T TIGR01306 118 HGHSNSVINMIKHIKTHLPDSFVIAGNVG----TPEAVRELENAGADATKVG 165 (321)
T ss_pred cCchHHHHHHHHHHHHhCCCCEEEEecCC----CHHHHHHHHHcCcCEEEEC
Confidence 89999999999888765444445544332 4566788889888776654
No 450
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=20.31 E-value=5.9e+02 Score=28.78 Aligned_cols=70 Identities=9% Similarity=-0.048 Sum_probs=37.9
Q ss_pred CCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEcc
Q 006577 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA 530 (640)
Q Consensus 455 gdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGA 530 (640)
|..|+++|...+=..+.+.+++. ..+|++.|.++...-.. ..+|.+ ++...+...+ . -.+.++|.||+..
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~~~--g~~v~~~d~~~~~~~~~-~~~l~~-~~~~~~~~~~-~-~~~~~~d~vV~Sp 77 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALRAH--LPAQALTLFCNAVEARE-VGALAD-AALLVETEAS-A-QRLAAFDVVVKSP 77 (468)
T ss_pred CCEEEEEccchhhHHHHHHHHHc--CCEEEEEcCCCcccchH-HHHHhh-cCEEEeCCCC-h-HHccCCCEEEECC
Confidence 55778877654333344444443 45788899886643222 234655 4433333222 1 2346788887754
No 451
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=20.25 E-value=8.1e+02 Score=25.49 Aligned_cols=112 Identities=16% Similarity=0.133 Sum_probs=56.4
Q ss_pred HHHHHHHhccC-C-CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCC----Cc-------hHH--HH--HHHHHhCCC
Q 006577 444 IVKHAVTKIRD-G-DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRP----KH-------EGK--LL--LRRLVRKGL 506 (640)
Q Consensus 444 Ia~~a~~~I~d-g-dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP----~~-------eG~--~L--a~eL~~~GI 506 (640)
+++..++.+.+ + |+|+|....+...+... |..-|..|-+.==+..+ .. .|. .| -+.....|=
T Consensus 99 v~~~la~~~~~~~~D~Vvtv~~~GI~lA~~l-A~~L~~p~vi~Rk~~~~~~~~~v~~y~s~s~~~~~~~~l~~~~l~~G~ 177 (238)
T PRK08558 99 IAPVVAERFMGLRVDVVLTAATDGIPLAVAI-ASYFGADLVYAKKSKETGVEKFYEEYQRLASGIEVTLYLPASALKKGD 177 (238)
T ss_pred HHHHHHHHccCCCCCEEEEECcccHHHHHHH-HHHHCcCEEEEEecCCCCCcceEEEeeccCCCceeEEEecHHHcCCcC
Confidence 34334444444 2 89999999887766543 33345554432101000 00 011 01 122234565
Q ss_pred ceEEEec--------hHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEec
Q 006577 507 SCTYTHI--------NAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (640)
Q Consensus 507 ~vTlI~D--------sAv~~iM~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~a 563 (640)
.|-+|-| .++..++++.+.-++|+-+++..|.. | .--+...+++||+.+.
T Consensus 178 rVLIVDDvi~TG~Tl~~~~~ll~~~ga~vvgv~vlv~~~~~----~---~~~l~~~~~vpv~sl~ 235 (238)
T PRK08558 178 RVLIVDDIIRSGETQRALLDLARQAGADVVGVFFLIAVGEV----G---IDRAREETDAPVDALY 235 (238)
T ss_pred EEEEEecccccCHHHHHHHHHHHHcCCEEEEEEEEEecCch----H---HHHHhHhcCCCEEEEE
Confidence 6666554 34445556777777777777766532 1 2222344778887653
No 452
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=20.23 E-value=1.4e+02 Score=29.72 Aligned_cols=32 Identities=22% Similarity=0.290 Sum_probs=18.9
Q ss_pred EEeecCcHHH---HHHHHHHHHcCCeeEEEEcCCC
Q 006577 458 LLTYGSSSAV---EMILQHAHELGKQFRVVIVDSR 489 (640)
Q Consensus 458 ILT~g~SstV---~~vL~~A~e~Gk~f~ViV~ESR 489 (640)
++-.|-|+.+ ..+++.+.+.|-..+|++.++-
T Consensus 4 ~lgvtGs~~a~~~~~ll~~L~~~g~~V~vi~T~~A 38 (177)
T TIGR02113 4 LLAVTGSIAAYKAADLTSQLTKLGYDVTVLMTQAA 38 (177)
T ss_pred EEEEcCHHHHHHHHHHHHHHHHCCCEEEEEEChHH
Confidence 3444444432 3566667667777777777653
No 453
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=20.20 E-value=2.4e+02 Score=27.36 Aligned_cols=66 Identities=15% Similarity=0.224 Sum_probs=36.4
Q ss_pred HHHHHHHhCCCceEEEechHHHHH---hhhccEEEE-cceeEecCCCeecccchHHHHHHHhhCCCcEEEeccccc
Q 006577 496 LLLRRLVRKGLSCTYTHINAISYI---IHEVTRVFL-GASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYK 567 (640)
Q Consensus 496 ~La~eL~~~GI~vTlI~DsAv~~i---M~~VdkVlv-GADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~aetyK 567 (640)
.+++.|.+.|+++.++........ ..++|.||+ |-. |+. ...+.+...+-+-..++||+-+|=-+-
T Consensus 13 ~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~dgvil~gG~-----~~~-~~~~~~~~i~~~~~~~~PvlGIC~G~Q 82 (184)
T cd01743 13 NLVQYLRELGAEVVVVRNDEITLEELELLNPDAIVISPGP-----GHP-EDAGISLEIIRALAGKVPILGVCLGHQ 82 (184)
T ss_pred HHHHHHHHcCCceEEEeCCCCCHHHHhhcCCCEEEECCCC-----CCc-ccchhHHHHHHHHhcCCCEEEECHhHH
Confidence 345777788888888876544332 246888776 332 111 122222222222245799997764443
No 454
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=20.12 E-value=5.5e+02 Score=25.20 Aligned_cols=97 Identities=15% Similarity=0.110 Sum_probs=53.4
Q ss_pred CCEEEeecCcHHH-HHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEE-ec----hHHHHHhh-------
Q 006577 455 GDVLLTYGSSSAV-EMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT-HI----NAISYIIH------- 521 (640)
Q Consensus 455 gdvILT~g~SstV-~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI-~D----sAv~~iM~------- 521 (640)
|.+||+.|-++.+ ..+.+...++| .+|+++-.|.......+..++...|-.+.++ .| ..+..++.
T Consensus 4 ~~~vlItGa~g~iG~~~a~~l~~~g--~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (250)
T PRK08063 4 GKVALVTGSSRGIGKAIALRLAEEG--YDIAVNYARSRKAAEETAEEIEALGRKALAVKANVGDVEKIKEMFAQIDEEFG 81 (250)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC--CEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 4567777777654 34455555555 4666655565555666667777666554443 33 23333333
Q ss_pred hccEEEEcceeEecCCCe-------------ecccchHHHHHHHhh
Q 006577 522 EVTRVFLGASSVLSNGTV-------------CSRVGTACVAMVAYG 554 (640)
Q Consensus 522 ~VdkVlvGADaIlaNG~V-------------vNKiGT~~lAlaAk~ 554 (640)
.+|.||-.|- +...+.. +|..|++.++-.+..
T Consensus 82 ~id~vi~~ag-~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~ 126 (250)
T PRK08063 82 RLDVFVNNAA-SGVLRPAMELEESHWDWTMNINAKALLFCAQEAAK 126 (250)
T ss_pred CCCEEEECCC-CCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3676666552 1111211 567788877766653
No 455
>PRK07179 hypothetical protein; Provisional
Probab=20.07 E-value=8.9e+02 Score=26.31 Aligned_cols=102 Identities=19% Similarity=0.070 Sum_probs=48.7
Q ss_pred CCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEe--c-hHHHHHhhh--ccEEEEc
Q 006577 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH--I-NAISYIIHE--VTRVFLG 529 (640)
Q Consensus 455 gdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~--D-sAv~~iM~~--VdkVlvG 529 (640)
...|+|.+-+.....+|......| -+|++.. +... .+...+...|+++..+. | ..+...+.+ ...|+
T Consensus 115 ~~~~~~~sG~~An~~~l~~l~~~g--~~v~~~~--~~h~--s~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~lV~-- 186 (407)
T PRK07179 115 ESCLLCQSGWAANVGLLQTIADPN--TPVYIDF--FAHM--SLWEGVRAAGAQAHPFRHNDVDHLRRQIERHGPGIIV-- 186 (407)
T ss_pred CcEEEECCHHHHHHHHHHHhCCCC--CEEEEEC--CcCH--HHHHHHHHCCCeEEEecCCCHHHHHHHHHhcCCeEEE--
Confidence 355665554455555555544333 3555532 2211 11223334576665442 2 334444543 22333
Q ss_pred ceeEecCCCeecccchHHHHHHHhhCCCcEEEeccccc
Q 006577 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYK 567 (640)
Q Consensus 530 ADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~aetyK 567 (640)
.+.+....+.+..+ ..|+-+|+.|++.++| =+.|-
T Consensus 187 v~~v~n~tG~i~pl--~~I~~l~~~~~~~liv-Dea~~ 221 (407)
T PRK07179 187 VDSVYSTTGTIAPL--ADIVDIAEEFGCVLVV-DESHS 221 (407)
T ss_pred ECCCCCCCCccccH--HHHHHHHHHcCCEEEE-ECccc
Confidence 34454333333332 4677788999987665 34443
Done!