Query 006577
Match_columns 640
No_of_seqs 274 out of 1443
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 03:18:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006577.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006577hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a0u_A Initiation factor 2B; S 100.0 1E-66 3.5E-71 556.5 27.8 302 298-614 26-355 (383)
2 2yvk_A Methylthioribose-1-phos 100.0 6.6E-67 2.2E-71 556.5 22.8 294 298-613 37-346 (374)
3 1t9k_A Probable methylthioribo 100.0 2.7E-66 9.1E-71 547.4 22.7 298 298-620 15-336 (347)
4 3a11_A Translation initiation 100.0 1.2E-65 4.2E-70 540.8 26.0 298 309-626 14-327 (338)
5 1t5o_A EIF2BD, translation ini 100.0 6.1E-66 2.1E-70 545.4 23.6 303 300-627 12-338 (351)
6 1vb5_A Translation initiation 100.0 1.3E-57 4.3E-62 467.8 25.2 258 328-613 2-259 (276)
7 3ecs_A Translation initiation 100.0 1.2E-57 3.9E-62 476.0 22.3 274 350-629 22-305 (315)
8 1w2w_B 5-methylthioribose-1-ph 100.0 1.1E-41 3.8E-46 333.4 8.0 150 478-627 2-190 (191)
9 1w2w_A 5-methylthioribose-1-ph 99.9 2.6E-25 8.8E-30 220.7 12.6 171 298-482 16-209 (211)
10 1uj6_A Ribose 5-phosphate isom 98.1 1E-05 3.5E-10 81.1 10.5 127 440-583 8-141 (227)
11 1m0s_A Ribose-5-phosphate isom 97.8 4.3E-05 1.5E-09 76.2 8.7 129 440-582 6-136 (219)
12 2f8m_A Ribose 5-phosphate isom 97.8 7.2E-05 2.5E-09 75.8 10.3 131 438-582 10-148 (244)
13 1lk5_A D-ribose-5-phosphate is 97.8 9.5E-05 3.3E-09 74.2 10.8 128 440-582 6-140 (229)
14 3kwm_A Ribose-5-phosphate isom 97.6 0.00014 4.9E-09 72.8 9.2 129 440-582 12-141 (224)
15 3l7o_A Ribose-5-phosphate isom 97.4 0.00052 1.8E-08 68.8 9.4 127 440-582 4-136 (225)
16 1o8b_A Ribose 5-phosphate isom 97.4 5.8E-05 2E-09 75.3 2.3 128 440-582 6-135 (219)
17 3hhe_A Ribose-5-phosphate isom 97.3 0.00072 2.4E-08 69.0 10.2 128 440-582 27-158 (255)
18 1xtz_A Ribose-5-phosphate isom 97.3 0.0005 1.7E-08 70.5 8.7 119 440-572 21-153 (264)
19 2pjm_A Ribose-5-phosphate isom 97.2 0.002 6.8E-08 64.6 11.9 128 440-582 6-139 (226)
20 3uw1_A Ribose-5-phosphate isom 96.6 0.0038 1.3E-07 63.2 8.1 115 441-572 15-138 (239)
21 4gmk_A Ribose-5-phosphate isom 90.8 2.1 7.1E-05 43.0 12.0 115 440-572 7-130 (228)
22 3ixq_A Ribose-5-phosphate isom 87.1 1.5 5.3E-05 43.9 8.1 128 441-582 7-139 (226)
23 3ic5_A Putative saccharopine d 81.0 15 0.00052 30.3 10.6 98 455-568 5-105 (118)
24 3i6i_A Putative leucoanthocyan 80.3 5.4 0.00018 40.2 8.9 100 455-563 10-118 (346)
25 3rrl_A Succinyl-COA:3-ketoacid 79.9 6.7 0.00023 39.2 9.2 98 446-543 12-172 (235)
26 1jw9_B Molybdopterin biosynthe 79.2 6.9 0.00024 38.7 9.1 113 444-568 21-157 (249)
27 3g0t_A Putative aminotransfera 78.2 15 0.00052 37.5 11.7 104 453-561 104-220 (437)
28 3e8x_A Putative NAD-dependent 76.7 5.2 0.00018 37.9 7.1 106 454-566 20-132 (236)
29 1jeo_A MJ1247, hypothetical pr 76.1 18 0.00063 33.0 10.5 84 446-530 31-133 (180)
30 1k6d_A Acetate COA-transferase 75.9 11 0.00039 36.8 9.5 43 522-570 148-194 (220)
31 3hgm_A Universal stress protei 74.8 29 0.001 29.7 11.0 60 499-562 77-147 (147)
32 3dqp_A Oxidoreductase YLBE; al 73.2 5.8 0.0002 37.1 6.4 100 457-565 2-106 (219)
33 3s3t_A Nucleotide-binding prot 71.8 35 0.0012 29.2 10.8 59 500-562 77-145 (146)
34 1vim_A Hypothetical protein AF 71.6 29 0.00099 32.7 10.9 83 447-529 39-140 (200)
35 4gx0_A TRKA domain protein; me 71.4 5.8 0.0002 43.4 6.8 106 447-563 315-440 (565)
36 4dq6_A Putative pyridoxal phos 70.5 24 0.00081 35.2 10.6 101 454-561 90-202 (391)
37 2oas_A ATOA, 4-hydroxybutyrate 68.8 6.6 0.00023 42.5 6.4 97 446-542 10-130 (436)
38 1m3s_A Hypothetical protein YC 68.6 31 0.0011 31.6 10.2 37 493-529 94-130 (186)
39 3qli_A Coenzyme A transferase; 67.8 10 0.00036 41.5 7.7 96 445-541 29-159 (455)
40 3h14_A Aminotransferase, class 67.0 32 0.0011 34.7 10.7 102 453-561 90-199 (391)
41 1qyd_A Pinoresinol-lariciresin 67.0 19 0.00066 35.1 8.8 102 456-562 5-114 (313)
42 3ruf_A WBGU; rossmann fold, UD 66.6 35 0.0012 34.0 10.8 109 454-565 24-151 (351)
43 4egb_A DTDP-glucose 4,6-dehydr 65.2 11 0.00037 37.6 6.8 112 454-565 23-149 (346)
44 2gas_A Isoflavone reductase; N 63.8 22 0.00074 34.7 8.5 99 455-562 2-110 (307)
45 2hj0_A Putative citrate lyase, 63.7 36 0.0012 37.7 11.1 113 448-561 55-205 (519)
46 3cdk_A Succinyl-COA:3-ketoacid 63.6 33 0.0011 34.1 9.9 44 522-571 151-198 (241)
47 1qz9_A Kynureninase; kynurenin 63.3 39 0.0013 34.2 10.6 101 455-561 89-200 (416)
48 2o8r_A Polyphosphate kinase; s 63.0 7.4 0.00025 44.9 5.6 47 465-511 384-432 (705)
49 2bfw_A GLGA glycogen synthase; 62.7 33 0.0011 30.9 9.0 99 453-562 34-145 (200)
50 3c85_A Putative glutathione-re 62.7 35 0.0012 31.0 9.3 86 455-556 39-130 (183)
51 3sho_A Transcriptional regulat 62.4 40 0.0014 30.8 9.6 38 493-530 102-139 (187)
52 1x92_A APC5045, phosphoheptose 62.4 97 0.0033 28.6 12.5 38 493-530 128-168 (199)
53 1xr4_A Putative citrate lyase 61.2 42 0.0014 37.1 11.0 114 447-561 51-202 (509)
54 2r6j_A Eugenol synthase 1; phe 61.2 18 0.00063 35.6 7.5 96 457-562 13-113 (318)
55 3dlo_A Universal stress protei 60.9 89 0.0031 27.7 12.3 103 457-562 27-154 (155)
56 2yvq_A Carbamoyl-phosphate syn 60.7 34 0.0012 31.2 8.7 93 453-561 24-130 (143)
57 3kax_A Aminotransferase, class 60.2 39 0.0013 33.6 9.8 101 454-561 82-194 (383)
58 1t3i_A Probable cysteine desul 59.5 1.5E+02 0.005 29.7 14.4 99 455-561 91-204 (420)
59 2dr1_A PH1308 protein, 386AA l 58.4 90 0.0031 30.8 12.1 97 457-561 74-181 (386)
60 2gm3_A Unknown protein; AT3G01 58.4 26 0.0009 31.4 7.5 64 500-567 95-166 (175)
61 2yv1_A Succinyl-COA ligase [AD 57.8 15 0.00052 37.4 6.4 105 455-561 71-179 (294)
62 3l9w_A Glutathione-regulated p 57.3 20 0.0007 38.2 7.5 92 455-563 4-102 (413)
63 2w48_A Sorbitol operon regulat 57.2 16 0.00054 37.2 6.4 89 442-531 93-213 (315)
64 3dzz_A Putative pyridoxal 5'-p 57.0 53 0.0018 32.7 10.1 101 454-561 85-198 (391)
65 2nvv_A Acetyl-COA hydrolase/tr 56.8 82 0.0028 34.7 12.4 96 446-542 9-139 (506)
66 1y8q_A Ubiquitin-like 1 activa 56.3 1.5E+02 0.0053 30.6 13.8 108 444-562 26-156 (346)
67 3lvm_A Cysteine desulfurase; s 56.1 1.3E+02 0.0044 30.3 13.0 102 455-561 86-198 (423)
68 1qyc_A Phenylcoumaran benzylic 56.1 33 0.0011 33.3 8.3 99 455-562 4-111 (308)
69 2g39_A Acetyl-COA hydrolase; c 56.1 1.1E+02 0.0039 33.5 13.3 94 447-542 20-144 (497)
70 1eg5_A Aminotransferase; PLP-d 56.1 1.6E+02 0.0054 28.9 14.0 99 455-561 62-176 (384)
71 3cwc_A Putative glycerate kina 55.8 9 0.00031 41.1 4.4 50 516-567 281-330 (383)
72 1oi7_A Succinyl-COA synthetase 55.7 16 0.00056 37.1 6.2 106 454-561 64-173 (288)
73 3dhn_A NAD-dependent epimerase 55.7 28 0.00094 32.3 7.3 102 456-565 5-112 (227)
74 3idf_A USP-like protein; unive 55.5 37 0.0013 28.8 7.6 60 499-562 73-137 (138)
75 3c1o_A Eugenol synthase; pheny 55.2 36 0.0012 33.4 8.5 98 456-562 5-111 (321)
76 3llv_A Exopolyphosphatase-rela 55.1 81 0.0028 27.2 9.9 90 455-561 6-100 (141)
77 1svv_A Threonine aldolase; str 55.0 32 0.0011 33.7 8.0 101 455-561 67-182 (359)
78 3fdb_A Beta C-S lyase, putativ 54.8 58 0.002 32.3 10.0 102 453-561 80-188 (377)
79 2xhz_A KDSD, YRBH, arabinose 5 54.7 53 0.0018 29.8 9.0 39 492-530 110-148 (183)
80 3l4e_A Uncharacterized peptida 53.9 24 0.00082 34.2 6.8 103 458-566 5-124 (206)
81 1kmj_A Selenocysteine lyase; p 53.8 1.8E+02 0.006 28.8 15.0 101 455-561 86-199 (406)
82 3isl_A Purine catabolism prote 53.8 1.6E+02 0.0053 29.5 13.1 89 465-561 73-171 (416)
83 2h1q_A Hypothetical protein; Z 53.5 20 0.00069 36.5 6.4 89 453-571 139-227 (270)
84 3ezs_A Aminotransferase ASPB; 53.3 80 0.0027 31.3 10.8 104 453-561 81-192 (376)
85 2huf_A Alanine glyoxylate amin 53.3 76 0.0026 31.6 10.6 98 456-561 72-179 (393)
86 2xbl_A Phosphoheptose isomeras 53.2 1.3E+02 0.0046 27.4 12.0 37 493-529 131-167 (198)
87 3npg_A Uncharacterized DUF364 53.0 30 0.001 34.7 7.5 96 453-575 114-209 (249)
88 1zud_1 Adenylyltransferase THI 52.7 99 0.0034 30.4 11.2 108 444-562 18-149 (251)
89 2z61_A Probable aspartate amin 52.4 59 0.002 32.3 9.6 97 454-561 89-188 (370)
90 1yaa_A Aspartate aminotransfer 52.4 96 0.0033 31.4 11.4 102 454-561 96-214 (412)
91 3dfz_A SIRC, precorrin-2 dehyd 52.3 14 0.0005 36.4 5.0 92 454-562 30-121 (223)
92 1xq6_A Unknown protein; struct 51.6 47 0.0016 30.9 8.2 106 454-565 3-133 (253)
93 3lk7_A UDP-N-acetylmuramoylala 51.5 36 0.0012 36.3 8.3 71 455-530 9-80 (451)
94 2zc0_A Alanine glyoxylate tran 51.3 63 0.0022 32.5 9.7 101 454-561 98-213 (407)
95 3l8a_A METC, putative aminotra 51.2 1.2E+02 0.0041 30.9 12.0 100 455-561 120-232 (421)
96 2fr1_A Erythromycin synthase, 50.9 72 0.0025 34.5 10.6 112 452-565 223-361 (486)
97 2g1u_A Hypothetical protein TM 50.7 61 0.0021 28.8 8.5 93 453-562 17-116 (155)
98 2cb1_A O-acetyl homoserine sul 50.4 45 0.0015 34.4 8.6 98 456-561 73-175 (412)
99 3cvj_A Putative phosphoheptose 50.3 1E+02 0.0035 29.7 10.6 42 488-529 118-170 (243)
100 2hmt_A YUAA protein; RCK, KTN, 50.1 54 0.0018 27.8 7.8 92 455-562 6-102 (144)
101 3f9t_A TDC, L-tyrosine decarbo 49.9 1.4E+02 0.0049 29.2 11.9 100 454-561 86-206 (397)
102 3ab8_A Putative uncharacterize 49.8 81 0.0028 30.0 9.8 99 457-562 157-267 (268)
103 1lss_A TRK system potassium up 49.7 63 0.0022 27.3 8.1 89 456-561 5-99 (140)
104 4ds3_A Phosphoribosylglycinami 49.6 35 0.0012 33.4 7.2 71 457-530 11-94 (209)
105 2dum_A Hypothetical protein PH 49.5 36 0.0012 30.2 6.8 60 500-563 86-155 (170)
106 1vjo_A Alanine--glyoxylate ami 49.4 64 0.0022 32.2 9.4 98 456-561 87-194 (393)
107 3cai_A Possible aminotransfera 49.4 1.3E+02 0.0044 30.1 11.7 99 455-561 87-200 (406)
108 2wm3_A NMRA-like family domain 49.1 47 0.0016 32.3 8.1 108 455-566 5-116 (299)
109 2ch1_A 3-hydroxykynurenine tra 49.0 83 0.0028 31.4 10.1 98 456-561 71-178 (396)
110 3hdj_A Probable ornithine cycl 48.4 73 0.0025 32.7 9.7 87 454-546 120-215 (313)
111 2o8n_A APOA-I binding protein; 48.4 2.3E+02 0.0078 28.6 13.2 121 437-562 55-188 (265)
112 3tnj_A Universal stress protei 48.2 1.3E+02 0.0044 25.7 10.3 57 503-563 82-146 (150)
113 4id9_A Short-chain dehydrogena 48.2 60 0.0021 32.1 8.9 98 455-565 19-126 (347)
114 3jtx_A Aminotransferase; NP_28 47.8 59 0.002 32.6 8.8 104 453-561 89-206 (396)
115 1lc5_A COBD, L-threonine-O-3-p 47.7 1E+02 0.0035 30.6 10.5 98 455-561 77-184 (364)
116 2yva_A DNAA initiator-associat 47.6 1.7E+02 0.0057 26.8 13.2 35 495-529 126-163 (196)
117 1vp4_A Aminotransferase, putat 47.6 98 0.0033 31.7 10.6 102 454-561 109-226 (425)
118 3vax_A Putative uncharacterize 47.5 2.2E+02 0.0076 28.2 14.0 101 455-561 81-194 (400)
119 1c7n_A Cystalysin; transferase 47.3 97 0.0033 31.0 10.4 101 454-561 89-202 (399)
120 2nu8_A Succinyl-COA ligase [AD 47.3 18 0.00062 36.7 4.9 104 455-560 65-172 (288)
121 3mad_A Sphingosine-1-phosphate 47.0 57 0.002 34.6 9.0 98 458-562 164-275 (514)
122 3ilh_A Two component response 46.9 57 0.002 27.3 7.4 57 457-513 37-100 (146)
123 3etn_A Putative phosphosugar i 46.6 59 0.002 31.1 8.3 38 493-530 121-160 (220)
124 4eb5_A Probable cysteine desul 46.5 2.2E+02 0.0076 27.9 14.4 96 456-558 62-170 (382)
125 2q7w_A Aspartate aminotransfer 46.4 1.4E+02 0.0049 29.7 11.4 104 454-561 92-210 (396)
126 2z08_A Universal stress protei 46.4 1.3E+02 0.0046 25.3 11.6 55 504-562 73-136 (137)
127 2ctz_A O-acetyl-L-homoserine s 46.2 1.2E+02 0.0041 31.4 11.1 97 456-561 75-179 (421)
128 2yv2_A Succinyl-COA synthetase 46.1 24 0.00083 36.0 5.7 105 455-561 72-180 (297)
129 3qhx_A Cystathionine gamma-syn 46.1 73 0.0025 32.7 9.4 97 456-561 83-186 (392)
130 3loq_A Universal stress protei 46.1 1.5E+02 0.0052 28.6 11.3 104 457-564 173-290 (294)
131 1sb8_A WBPP; epimerase, 4-epim 46.0 1.2E+02 0.0042 30.0 10.8 109 454-565 26-153 (352)
132 1mjh_A Protein (ATP-binding do 46.0 58 0.002 28.5 7.5 60 500-563 91-158 (162)
133 2gn4_A FLAA1 protein, UDP-GLCN 46.0 61 0.0021 32.8 8.7 112 453-567 19-144 (344)
134 1nri_A Hypothetical protein HI 46.0 2.5E+02 0.0085 28.3 13.3 56 492-549 154-212 (306)
135 2x5d_A Probable aminotransfera 45.9 66 0.0022 32.7 8.9 100 455-561 100-210 (412)
136 3m2p_A UDP-N-acetylglucosamine 45.6 41 0.0014 32.9 7.1 99 456-564 3-108 (311)
137 2e7j_A SEP-tRNA:Cys-tRNA synth 45.2 1.6E+02 0.0055 28.9 11.4 96 456-561 71-182 (371)
138 3gk7_A 4-hydroxybutyrate COA-t 45.2 43 0.0015 36.5 7.7 96 446-542 15-135 (448)
139 1tq8_A Hypothetical protein RV 44.8 1.6E+02 0.0054 26.2 10.4 61 499-563 88-157 (163)
140 1hdo_A Biliverdin IX beta redu 44.7 40 0.0014 30.3 6.4 104 456-566 4-112 (206)
141 3rss_A Putative uncharacterize 44.4 1.7E+02 0.006 32.1 12.5 117 439-562 34-158 (502)
142 3h5i_A Response regulator/sens 44.4 75 0.0026 26.8 7.8 80 480-566 5-88 (140)
143 3f6p_A Transcriptional regulat 44.2 61 0.0021 26.6 7.0 77 482-566 4-83 (120)
144 3gpi_A NAD-dependent epimerase 44.2 22 0.00075 34.5 4.8 98 456-565 4-109 (286)
145 1byr_A Protein (endonuclease); 44.0 83 0.0028 27.6 8.2 56 457-512 31-88 (155)
146 3q2o_A Phosphoribosylaminoimid 43.6 7.6 0.00026 40.3 1.4 75 451-531 10-84 (389)
147 3tqr_A Phosphoribosylglycinami 43.6 59 0.002 31.9 7.8 70 457-530 9-91 (215)
148 3eh7_A 4-hydroxybutyrate COA-t 43.6 46 0.0016 36.0 7.6 94 447-541 20-138 (434)
149 1qgn_A Protein (cystathionine 43.5 1.3E+02 0.0046 31.9 11.2 98 456-561 131-235 (445)
150 3ew7_A LMO0794 protein; Q8Y8U8 43.4 77 0.0026 28.9 8.2 97 457-563 2-101 (221)
151 3kgw_A Alanine-glyoxylate amin 43.4 1E+02 0.0035 30.4 9.7 97 457-561 77-183 (393)
152 3fwz_A Inner membrane protein 43.2 85 0.0029 27.4 8.2 93 455-563 7-103 (140)
153 2i2w_A Phosphoheptose isomeras 43.1 2.1E+02 0.0073 26.8 13.2 35 494-528 147-181 (212)
154 2ay1_A Aroat, aromatic amino a 42.9 1.4E+02 0.0047 29.9 10.6 101 455-561 90-207 (394)
155 3fxa_A SIS domain protein; str 42.8 1.1E+02 0.0038 28.3 9.3 37 494-530 108-144 (201)
156 3rsc_A CALG2; TDP, enediyne, s 42.5 54 0.0018 33.2 7.6 21 547-567 131-151 (415)
157 2bkw_A Alanine-glyoxylate amin 42.4 1.6E+02 0.0055 29.0 10.9 99 455-561 60-174 (385)
158 2z5l_A Tylkr1, tylactone synth 42.4 1E+02 0.0034 33.7 10.2 112 452-565 256-391 (511)
159 2lpm_A Two-component response 42.3 27 0.00093 31.0 4.7 78 478-564 6-87 (123)
160 2ahu_A Putative enzyme YDIF; C 42.2 1.5E+02 0.0051 32.8 11.6 44 522-565 180-228 (531)
161 2z9v_A Aspartate aminotransfer 42.2 1.6E+02 0.0056 29.1 11.0 99 455-561 60-169 (392)
162 1m32_A 2-aminoethylphosphonate 42.1 1.1E+02 0.0036 29.9 9.4 98 456-561 58-166 (366)
163 1ek6_A UDP-galactose 4-epimera 42.0 1.2E+02 0.0042 29.8 10.0 108 456-565 3-132 (348)
164 3ia7_A CALG4; glycosysltransfe 41.9 59 0.002 32.5 7.7 21 547-567 115-135 (402)
165 2fp4_A Succinyl-COA ligase [GD 41.8 33 0.0011 35.2 5.9 105 455-561 72-181 (305)
166 3trj_A Phosphoheptose isomeras 41.5 2.3E+02 0.0079 26.6 11.5 36 493-528 129-167 (201)
167 3fdx_A Putative filament prote 41.4 1.6E+02 0.0055 24.8 10.7 36 522-562 106-142 (143)
168 3cis_A Uncharacterized protein 41.3 2.3E+02 0.0077 27.7 11.8 59 505-567 100-164 (309)
169 2okj_A Glutamate decarboxylase 41.0 2.3E+02 0.0077 30.0 12.5 103 454-561 151-280 (504)
170 3acz_A Methionine gamma-lyase; 40.8 92 0.0031 31.8 9.1 98 456-561 76-179 (389)
171 3kcq_A Phosphoribosylglycinami 40.6 44 0.0015 32.8 6.3 72 457-531 12-91 (215)
172 2dou_A Probable N-succinyldiam 40.6 1.4E+02 0.0048 29.6 10.3 99 456-561 89-196 (376)
173 4gqb_A Protein arginine N-meth 40.3 33 0.0011 39.0 6.1 69 456-527 359-433 (637)
174 1n8p_A Cystathionine gamma-lya 40.3 82 0.0028 32.4 8.7 97 456-561 72-177 (393)
175 3t6k_A Response regulator rece 40.1 1.1E+02 0.0038 25.7 8.2 79 480-566 4-88 (136)
176 1ajs_A Aspartate aminotransfer 40.0 1.8E+02 0.006 29.3 11.0 104 454-561 97-221 (412)
177 2qzj_A Two-component response 40.0 1.1E+02 0.0038 25.7 8.2 78 480-565 4-84 (136)
178 4ggj_A Mitochondrial cardiolip 40.0 43 0.0015 31.8 6.0 56 457-513 63-119 (196)
179 4e4t_A Phosphoribosylaminoimid 40.0 29 0.001 36.7 5.3 77 451-533 31-107 (419)
180 3h2s_A Putative NADH-flavin re 40.0 53 0.0018 30.2 6.6 99 457-563 2-104 (224)
181 3nbm_A PTS system, lactose-spe 39.9 29 0.00099 30.6 4.4 55 500-563 29-85 (108)
182 1o1y_A Conserved hypothetical 39.9 24 0.00084 34.5 4.4 86 479-564 11-101 (239)
183 1elu_A L-cysteine/L-cystine C- 39.8 2.1E+02 0.0072 28.2 11.3 99 455-561 77-193 (390)
184 3e48_A Putative nucleoside-dip 39.7 40 0.0014 32.5 5.9 101 457-566 2-107 (289)
185 3ftb_A Histidinol-phosphate am 39.6 84 0.0029 30.9 8.3 97 454-561 78-182 (361)
186 2aef_A Calcium-gated potassium 39.4 40 0.0014 32.1 5.7 91 455-564 9-106 (234)
187 2fq6_A Cystathionine beta-lyas 39.4 73 0.0025 33.4 8.3 74 481-561 122-204 (415)
188 1d2f_A MALY protein; aminotran 39.4 1.2E+02 0.0043 30.2 9.7 101 454-561 87-200 (390)
189 3d3u_A 4-hydroxybutyrate COA-t 39.3 28 0.00097 37.5 5.1 118 445-565 14-158 (439)
190 4dqv_A Probable peptide synthe 39.3 54 0.0018 34.9 7.3 110 453-564 71-214 (478)
191 3zrp_A Serine-pyruvate aminotr 39.1 1.2E+02 0.004 29.9 9.3 97 456-561 56-162 (384)
192 1mio_B Nitrogenase molybdenum 39.0 3.9E+02 0.013 28.5 14.6 94 454-563 311-410 (458)
193 1x87_A Urocanase protein; stru 38.9 1.1E+02 0.0038 34.1 9.6 115 373-491 210-366 (551)
194 2x4g_A Nucleoside-diphosphate- 38.8 71 0.0024 31.4 7.6 103 456-565 14-126 (342)
195 1tk9_A Phosphoheptose isomeras 38.7 2.2E+02 0.0076 25.6 11.3 37 492-528 124-160 (188)
196 3mt0_A Uncharacterized protein 38.7 2.8E+02 0.0094 26.8 13.4 97 466-568 23-132 (290)
197 2ydy_A Methionine adenosyltran 38.5 62 0.0021 31.5 7.1 100 455-566 2-112 (315)
198 2yrr_A Aminotransferase, class 38.5 87 0.003 30.3 8.1 96 456-561 54-159 (353)
199 1jkx_A GART;, phosphoribosylgl 38.4 81 0.0028 30.6 7.8 71 457-531 4-88 (212)
200 1oc2_A DTDP-glucose 4,6-dehydr 38.3 20 0.00069 35.6 3.5 109 456-564 5-125 (348)
201 4f4e_A Aromatic-amino-acid ami 38.1 1.8E+02 0.0063 29.5 10.9 100 456-561 119-233 (420)
202 1poi_B Glutaconate coenzyme A- 38.1 1.3E+02 0.0046 30.2 9.6 93 441-540 8-116 (260)
203 2zcu_A Uncharacterized oxidore 37.7 87 0.003 29.8 7.9 99 458-565 2-104 (286)
204 3orq_A N5-carboxyaminoimidazol 37.6 23 0.0008 36.6 4.0 71 452-532 9-83 (377)
205 1u08_A Hypothetical aminotrans 37.4 2.1E+02 0.0072 28.4 11.0 99 456-561 93-201 (386)
206 2pln_A HP1043, response regula 37.3 1.3E+02 0.0043 25.1 8.1 77 478-566 16-96 (137)
207 3olq_A Universal stress protei 37.2 2.2E+02 0.0075 27.6 10.9 62 499-564 235-305 (319)
208 1jmv_A USPA, universal stress 37.0 1.9E+02 0.0064 24.4 11.5 57 501-563 73-137 (141)
209 3ndn_A O-succinylhomoserine su 36.9 1E+02 0.0035 32.2 8.8 98 456-561 98-201 (414)
210 1j32_A Aspartate aminotransfer 36.8 1.1E+02 0.0037 30.5 8.7 101 454-561 90-201 (388)
211 1e5e_A MGL, methionine gamma-l 36.8 2.3E+02 0.0078 29.1 11.4 98 456-561 79-183 (404)
212 1iay_A ACC synthase 2, 1-amino 36.8 1.5E+02 0.005 30.2 9.9 103 452-561 106-226 (428)
213 3st7_A Capsular polysaccharide 36.7 74 0.0025 32.0 7.5 31 457-488 2-33 (369)
214 2jl1_A Triphenylmethane reduct 36.5 85 0.0029 30.0 7.6 102 457-565 2-107 (287)
215 2rfv_A Methionine gamma-lyase; 36.5 1.7E+02 0.0057 29.7 10.2 98 456-561 81-184 (398)
216 1gd9_A Aspartate aminotransfer 36.4 1.6E+02 0.0055 29.3 9.9 102 453-561 85-198 (389)
217 3cg0_A Response regulator rece 36.4 1.1E+02 0.0038 25.3 7.5 82 478-566 7-92 (140)
218 3fsl_A Aromatic-amino-acid ami 36.2 3E+02 0.01 27.3 12.0 100 456-561 97-211 (397)
219 1bw0_A TAT, protein (tyrosine 36.2 1.4E+02 0.0047 30.2 9.5 102 454-561 104-215 (416)
220 3jvi_A Protein tyrosine phosph 36.0 35 0.0012 31.7 4.6 68 462-529 16-90 (161)
221 3nhm_A Response regulator; pro 35.7 1.4E+02 0.0047 24.5 7.9 56 454-514 26-86 (133)
222 3eod_A Protein HNR; response r 35.2 1.4E+02 0.0047 24.5 7.8 79 480-566 7-89 (130)
223 1zgz_A Torcad operon transcrip 35.1 1.7E+02 0.0057 23.6 8.3 78 481-566 3-83 (122)
224 1v4v_A UDP-N-acetylglucosamine 35.1 2.4E+02 0.0081 27.9 10.9 70 476-562 226-299 (376)
225 1id1_A Putative potassium chan 34.9 1.8E+02 0.0062 25.5 9.0 98 456-565 4-107 (153)
226 1uwk_A Urocanate hydratase; hy 34.4 1.1E+02 0.0038 34.1 8.7 115 373-491 215-371 (557)
227 3nra_A Aspartate aminotransfer 34.3 1.1E+02 0.0038 30.5 8.4 100 455-561 103-217 (407)
228 1lnq_A MTHK channels, potassiu 33.9 59 0.002 32.8 6.3 90 455-563 115-209 (336)
229 1yiz_A Kynurenine aminotransfe 33.9 1.8E+02 0.0063 29.4 10.0 99 456-561 103-220 (429)
230 3s2u_A UDP-N-acetylglucosamine 33.9 2.3E+02 0.0079 28.8 10.8 92 455-562 180-278 (365)
231 1zh2_A KDP operon transcriptio 33.8 1.8E+02 0.006 23.2 8.2 78 481-566 2-82 (121)
232 1e6u_A GDP-fucose synthetase; 33.7 91 0.0031 30.3 7.4 92 456-565 4-107 (321)
233 4b4o_A Epimerase family protei 33.5 67 0.0023 31.2 6.4 85 457-558 2-99 (298)
234 3ec7_A Putative dehydrogenase; 33.4 2.7E+02 0.0093 28.3 11.2 114 456-573 24-155 (357)
235 3rui_A Ubiquitin-like modifier 33.4 4.4E+02 0.015 27.5 13.1 103 455-569 34-175 (340)
236 3la8_A SMU.1229, putative puri 33.3 1E+02 0.0035 31.9 8.0 76 459-566 188-266 (303)
237 4adb_A Succinylornithine trans 33.2 3.7E+02 0.013 26.7 12.1 102 455-561 97-222 (406)
238 3m6m_D Sensory/regulatory prot 33.0 81 0.0028 26.9 6.2 79 479-565 13-99 (143)
239 2zyj_A Alpha-aminodipate amino 32.8 1.3E+02 0.0044 30.2 8.6 102 454-561 91-201 (397)
240 1orr_A CDP-tyvelose-2-epimeras 32.8 49 0.0017 32.5 5.3 104 457-563 3-124 (347)
241 3oy2_A Glycosyltransferase B73 32.8 61 0.0021 32.6 6.2 98 455-562 184-303 (413)
242 1smk_A Malate dehydrogenase, g 32.8 1.5E+02 0.0052 30.2 9.2 99 456-557 9-117 (326)
243 1tt5_A APPBP1, amyloid protein 32.7 3.8E+02 0.013 29.5 12.9 108 444-562 22-155 (531)
244 3da8_A Probable 5'-phosphoribo 32.7 68 0.0023 31.5 6.2 69 458-530 17-97 (215)
245 3rht_A (gatase1)-like protein; 32.6 27 0.00092 35.3 3.4 81 482-569 6-92 (259)
246 3auf_A Glycinamide ribonucleot 32.4 1.2E+02 0.0041 29.9 8.0 71 458-531 27-110 (229)
247 3ua3_A Protein arginine N-meth 32.3 62 0.0021 37.6 6.6 84 442-527 394-500 (745)
248 2fkn_A Urocanate hydratase; ro 32.2 1.1E+02 0.0038 34.1 8.2 115 373-491 211-367 (552)
249 3ilh_A Two component response 32.2 1.9E+02 0.0064 23.9 8.3 82 477-566 6-102 (146)
250 7aat_A Aspartate aminotransfer 32.0 2.2E+02 0.0074 28.5 10.1 102 454-561 94-213 (401)
251 3eag_A UDP-N-acetylmuramate:L- 32.0 1.7E+02 0.0059 29.6 9.4 68 456-530 5-74 (326)
252 3ke3_A Putative serine-pyruvat 31.8 4E+02 0.014 26.6 13.0 99 457-562 54-174 (379)
253 3ez1_A Aminotransferase MOCR f 31.6 1.6E+02 0.0055 29.8 9.1 105 453-561 86-212 (423)
254 3a2b_A Serine palmitoyltransfe 31.6 2.5E+02 0.0084 28.1 10.4 96 456-561 105-208 (398)
255 2hq1_A Glucose/ribitol dehydro 31.5 2.4E+02 0.0081 26.3 9.7 75 455-531 5-92 (247)
256 1vl0_A DTDP-4-dehydrorhamnose 31.5 76 0.0026 30.5 6.4 92 455-565 12-114 (292)
257 4gek_A TRNA (CMO5U34)-methyltr 31.5 1.2E+02 0.004 29.9 7.8 84 441-527 57-144 (261)
258 4eu9_A Succinyl-COA:acetate co 31.5 1.2E+02 0.004 33.4 8.5 96 446-541 18-147 (514)
259 3cis_A Uncharacterized protein 31.3 3.7E+02 0.013 26.1 12.4 57 504-564 244-306 (309)
260 3jyo_A Quinate/shikimate dehyd 31.2 1.7E+02 0.0058 29.4 9.1 72 454-527 126-199 (283)
261 3dyd_A Tyrosine aminotransfera 31.2 1.4E+02 0.0048 30.6 8.7 102 453-561 117-229 (427)
262 3l5o_A Uncharacterized protein 31.1 88 0.003 31.9 6.9 88 454-571 140-227 (270)
263 2o1b_A Aminotransferase, class 31.0 1.9E+02 0.0065 29.3 9.6 100 455-561 110-219 (404)
264 1iz0_A Quinone oxidoreductase; 30.8 1.5E+02 0.005 29.2 8.4 52 452-510 123-175 (302)
265 3two_A Mannitol dehydrogenase; 30.7 82 0.0028 31.8 6.7 55 451-513 173-227 (348)
266 2dgk_A GAD-beta, GADB, glutama 30.7 4E+02 0.014 27.5 12.2 97 457-561 106-228 (452)
267 2vqe_K 30S ribosomal protein S 30.6 62 0.0021 29.6 5.1 45 467-514 65-111 (129)
268 1qkk_A DCTD, C4-dicarboxylate 30.5 1.2E+02 0.0042 25.8 6.9 79 480-566 3-85 (155)
269 2zay_A Response regulator rece 30.5 1.2E+02 0.0041 25.5 6.8 81 478-566 6-92 (147)
270 3tqx_A 2-amino-3-ketobutyrate 30.4 3.7E+02 0.013 26.5 11.4 96 456-561 105-210 (399)
271 2r2n_A Kynurenine/alpha-aminoa 30.4 3.2E+02 0.011 27.8 11.2 100 456-561 110-229 (425)
272 4dik_A Flavoprotein; TM0755, e 30.2 3.7E+02 0.012 28.5 11.9 83 482-567 267-362 (410)
273 1u2p_A Ptpase, low molecular w 30.2 54 0.0018 30.3 4.8 67 461-529 15-89 (163)
274 3mz0_A Inositol 2-dehydrogenas 30.2 2.5E+02 0.0085 28.2 10.2 112 457-573 4-134 (344)
275 1pjq_A CYSG, siroheme synthase 30.2 1.2E+02 0.004 32.7 8.1 95 454-565 11-106 (457)
276 2rjn_A Response regulator rece 29.8 1.3E+02 0.0046 25.5 7.1 80 479-566 6-89 (154)
277 3fro_A GLGA glycogen synthase; 29.8 1.9E+02 0.0064 28.8 9.1 99 453-562 249-360 (439)
278 3hzh_A Chemotaxis response reg 29.7 1.5E+02 0.0052 25.5 7.5 81 478-566 34-121 (157)
279 3cog_A Cystathionine gamma-lya 29.7 1.7E+02 0.0058 30.2 9.0 97 456-561 84-187 (403)
280 3rqi_A Response regulator prot 29.7 1.8E+02 0.0061 26.0 8.2 79 480-566 7-89 (184)
281 2b4a_A BH3024; flavodoxin-like 29.6 1.8E+02 0.0063 24.1 7.8 79 479-565 14-98 (138)
282 3h4t_A Glycosyltransferase GTF 29.6 1.5E+02 0.0052 30.3 8.6 98 457-565 4-125 (404)
283 3slg_A PBGP3 protein; structur 29.6 38 0.0013 34.0 4.0 104 455-564 24-141 (372)
284 3g7q_A Valine-pyruvate aminotr 29.5 79 0.0027 31.9 6.3 107 452-561 96-218 (417)
285 1mvo_A PHOP response regulator 29.5 2E+02 0.007 23.5 8.0 77 481-565 4-84 (136)
286 3asa_A LL-diaminopimelate amin 29.5 1.6E+02 0.0054 29.8 8.6 100 454-561 95-201 (400)
287 3nnk_A Ureidoglycine-glyoxylat 29.3 3.2E+02 0.011 27.1 10.8 96 458-561 67-173 (411)
288 3j20_M 30S ribosomal protein S 29.3 87 0.003 29.0 5.9 48 467-514 64-118 (137)
289 3sc6_A DTDP-4-dehydrorhamnose 29.1 25 0.00085 33.9 2.4 90 457-565 7-107 (287)
290 3ri6_A O-acetylhomoserine sulf 29.1 2.5E+02 0.0085 29.6 10.3 87 467-561 110-202 (430)
291 1qg8_A Protein (spore coat pol 29.0 1.3E+02 0.0044 28.1 7.4 80 457-537 6-104 (255)
292 2ejb_A Probable aromatic acid 29.0 1.2E+02 0.0039 29.2 7.0 21 468-488 18-38 (189)
293 1gc0_A Methionine gamma-lyase; 28.9 2.3E+02 0.0079 28.7 9.8 98 456-561 82-185 (398)
294 1y1p_A ARII, aldehyde reductas 28.8 1.8E+02 0.006 28.3 8.6 110 453-565 9-132 (342)
295 1v2d_A Glutamine aminotransfer 28.7 2E+02 0.0069 28.5 9.2 100 455-561 79-190 (381)
296 3rft_A Uronate dehydrogenase; 28.7 80 0.0027 30.4 6.0 98 455-565 3-111 (267)
297 1fc4_A 2-amino-3-ketobutyrate 28.7 3.8E+02 0.013 26.6 11.3 96 456-561 107-212 (401)
298 3hv2_A Response regulator/HD d 28.6 1.1E+02 0.0039 26.0 6.4 80 479-566 13-96 (153)
299 3uwc_A Nucleotide-sugar aminot 28.6 1.2E+02 0.004 30.1 7.3 95 451-561 50-157 (374)
300 3r8n_K 30S ribosomal protein S 28.6 46 0.0016 29.9 3.9 45 467-514 55-101 (117)
301 3fwk_A FMN adenylyltransferase 28.5 5.1E+02 0.018 26.8 12.2 111 394-512 3-140 (308)
302 1wv2_A Thiazole moeity, thiazo 28.5 3.1E+02 0.011 28.0 10.4 115 448-566 65-197 (265)
303 3av3_A Phosphoribosylglycinami 28.5 1.5E+02 0.0051 28.7 7.8 71 457-530 7-90 (212)
304 2jba_A Phosphate regulon trans 28.5 1.9E+02 0.0064 23.4 7.5 78 481-566 3-86 (127)
305 3b46_A Aminotransferase BNA3; 28.3 1.6E+02 0.0056 30.4 8.7 100 455-561 119-239 (447)
306 3ffh_A Histidinol-phosphate am 28.3 1.5E+02 0.0051 29.2 8.0 97 455-561 85-192 (363)
307 3mt0_A Uncharacterized protein 28.2 3.6E+02 0.012 25.9 10.7 61 500-564 207-276 (290)
308 3sho_A Transcriptional regulat 28.0 3.3E+02 0.011 24.5 10.7 90 445-565 29-123 (187)
309 2cwd_A Low molecular weight ph 27.7 58 0.002 30.1 4.5 74 457-531 6-92 (161)
310 3h1g_A Chemotaxis protein CHEY 27.5 2.2E+02 0.0075 23.4 7.9 78 480-565 5-90 (129)
311 1cs1_A CGS, protein (cystathio 27.4 4.3E+02 0.015 26.4 11.4 98 456-561 69-172 (386)
312 2z1d_A Hydrogenase expression/ 27.3 56 0.0019 34.9 4.8 49 510-562 178-226 (372)
313 3awd_A GOX2181, putative polyo 27.3 3.9E+02 0.013 25.0 10.7 106 454-562 12-147 (260)
314 1db3_A GDP-mannose 4,6-dehydra 27.2 1.3E+02 0.0044 29.9 7.4 108 456-565 2-132 (372)
315 3r0j_A Possible two component 27.1 1.8E+02 0.0061 27.4 8.0 80 479-566 22-105 (250)
316 3tsa_A SPNG, NDP-rhamnosyltran 27.1 1.4E+02 0.0049 29.8 7.7 19 546-564 125-143 (391)
317 2bwn_A 5-aminolevulinate synth 27.1 4.8E+02 0.016 26.0 12.9 72 482-561 134-213 (401)
318 1piw_A Hypothetical zinc-type 26.8 1.5E+02 0.005 30.1 7.8 53 451-510 176-228 (360)
319 2o0m_A Transcriptional regulat 26.7 86 0.0029 32.2 6.1 91 442-533 125-246 (345)
320 1b5p_A Protein (aspartate amin 26.6 2.5E+02 0.0087 28.0 9.5 100 455-561 92-202 (385)
321 3i16_A Aluminum resistance pro 26.6 1.7E+02 0.0058 31.1 8.5 95 460-561 97-217 (427)
322 4hv4_A UDP-N-acetylmuramate--L 26.6 1.6E+02 0.0054 31.8 8.4 68 454-530 21-89 (494)
323 1gy8_A UDP-galactose 4-epimera 26.5 1.9E+02 0.0064 29.1 8.5 109 455-565 2-144 (397)
324 3e9k_A Kynureninase; kynurenin 26.4 2.4E+02 0.0081 29.2 9.5 101 455-561 129-249 (465)
325 3enk_A UDP-glucose 4-epimerase 26.4 2.2E+02 0.0076 27.8 8.8 109 454-565 4-129 (341)
326 3vps_A TUNA, NAD-dependent epi 26.4 62 0.0021 31.3 4.7 26 541-566 95-120 (321)
327 1pff_A Methionine gamma-lyase; 26.3 2.2E+02 0.0075 27.6 8.8 98 456-561 15-119 (331)
328 1qo0_D AMIR; binding protein, 26.3 51 0.0017 29.8 3.8 78 479-566 11-89 (196)
329 3aow_A Putative uncharacterize 26.2 2.1E+02 0.0071 29.8 9.0 102 454-561 140-255 (448)
330 3tqh_A Quinone oxidoreductase; 26.2 88 0.003 31.2 5.9 69 451-527 149-220 (321)
331 1f0k_A MURG, UDP-N-acetylgluco 26.2 3.6E+02 0.012 26.3 10.4 66 480-562 212-280 (364)
332 2ord_A Acoat, acetylornithine 26.1 4.1E+02 0.014 26.5 10.9 16 546-561 207-222 (397)
333 2o0r_A RV0858C (N-succinyldiam 26.0 2.7E+02 0.0092 28.0 9.6 99 456-561 88-198 (411)
334 4hvk_A Probable cysteine desul 26.0 4.6E+02 0.016 25.4 14.5 98 456-561 62-172 (382)
335 4dad_A Putative pilus assembly 26.0 63 0.0022 27.3 4.2 80 479-566 19-105 (146)
336 1b93_A Protein (methylglyoxal 26.0 3.1E+02 0.011 25.6 9.2 100 455-565 12-122 (152)
337 3ius_A Uncharacterized conserv 25.9 1.3E+02 0.0044 28.8 6.8 95 456-565 6-103 (286)
338 1i24_A Sulfolipid biosynthesis 25.6 1.3E+02 0.0046 30.2 7.2 112 451-565 7-155 (404)
339 2x5o_A UDP-N-acetylmuramoylala 25.5 47 0.0016 35.2 3.9 68 455-530 5-72 (439)
340 3ly1_A Putative histidinol-pho 25.5 2.3E+02 0.008 27.6 8.8 98 454-561 68-178 (354)
341 3bh0_A DNAB-like replicative h 25.4 3.2E+02 0.011 27.4 10.0 39 451-489 64-107 (315)
342 3uog_A Alcohol dehydrogenase; 25.3 2.1E+02 0.0072 29.1 8.7 54 451-511 186-239 (363)
343 3h5n_A MCCB protein; ubiquitin 25.2 4E+02 0.014 27.5 10.9 102 450-562 114-240 (353)
344 3beo_A UDP-N-acetylglucosamine 25.2 2.7E+02 0.0091 27.3 9.2 70 477-562 235-307 (375)
345 4fzr_A SSFS6; structural genom 25.1 1.1E+02 0.0039 30.7 6.6 49 456-512 16-69 (398)
346 3fbg_A Putative arginate lyase 25.1 1.8E+02 0.0061 29.3 8.1 52 454-512 150-202 (346)
347 3ehe_A UDP-glucose 4-epimerase 25.0 76 0.0026 30.9 5.1 101 457-565 3-114 (313)
348 3e2y_A Kynurenine-oxoglutarate 24.8 2E+02 0.0068 28.8 8.3 100 455-561 86-205 (410)
349 3nmy_A Xometc, cystathionine g 24.7 2.2E+02 0.0075 29.5 8.8 73 482-561 107-187 (400)
350 3ele_A Amino transferase; RER0 24.6 3.7E+02 0.013 26.6 10.3 103 453-561 98-216 (398)
351 4gsl_A Ubiquitin-like modifier 24.5 6.3E+02 0.022 28.7 12.9 105 448-563 320-463 (615)
352 1jbe_A Chemotaxis protein CHEY 24.4 2.6E+02 0.0089 22.6 7.7 79 479-565 3-88 (128)
353 1to6_A Glycerate kinase; glyce 24.4 36 0.0012 36.4 2.7 48 517-567 273-320 (371)
354 2j48_A Two-component sensor ki 24.4 1.6E+02 0.0056 23.0 6.2 77 482-566 3-85 (119)
355 2l82_A Designed protein OR32; 24.3 1.3E+02 0.0046 27.2 6.0 58 456-515 81-139 (162)
356 3ip3_A Oxidoreductase, putativ 24.3 1.4E+02 0.0048 30.1 7.0 113 457-572 4-135 (337)
357 3p9x_A Phosphoribosylglycinami 24.2 1.5E+02 0.0053 28.9 7.0 71 457-531 6-90 (211)
358 4gud_A Imidazole glycerol phos 24.2 44 0.0015 31.4 3.0 74 482-565 4-81 (211)
359 1d1q_A Tyrosine phosphatase (E 24.1 69 0.0024 29.5 4.3 72 457-529 9-94 (161)
360 2z1m_A GDP-D-mannose dehydrata 24.1 1E+02 0.0034 30.2 5.8 107 455-564 3-126 (345)
361 4eye_A Probable oxidoreductase 24.1 2.1E+02 0.0073 28.7 8.4 53 451-510 156-209 (342)
362 1xdp_A Polyphosphate kinase; P 24.0 78 0.0027 36.4 5.5 48 465-512 379-428 (687)
363 2b69_A UDP-glucuronate decarbo 24.0 60 0.002 32.2 4.2 108 454-565 26-142 (343)
364 3fg9_A Protein of universal st 23.9 3.4E+02 0.012 23.2 10.9 37 522-562 119-155 (156)
365 2pl1_A Transcriptional regulat 23.9 2.7E+02 0.0091 22.2 7.6 76 482-565 2-81 (121)
366 1xi9_A Putative transaminase; 23.9 4.1E+02 0.014 26.6 10.5 100 455-561 102-212 (406)
367 2ywr_A Phosphoribosylglycinami 23.9 2.5E+02 0.0086 27.1 8.5 71 458-531 6-89 (216)
368 3heb_A Response regulator rece 23.8 1.8E+02 0.0061 24.7 6.7 59 457-515 32-99 (152)
369 1fg7_A Histidinol phosphate am 23.8 2.3E+02 0.0078 28.2 8.5 53 455-512 76-128 (356)
370 3oh8_A Nucleoside-diphosphate 23.8 2.8E+02 0.0096 29.7 9.7 97 455-565 147-254 (516)
371 3hvy_A Cystathionine beta-lyas 23.8 1.7E+02 0.0059 31.0 7.9 95 460-561 98-217 (427)
372 4ffl_A PYLC; amino acid, biosy 23.7 33 0.0011 34.8 2.3 68 456-533 2-74 (363)
373 2r5f_A Transcriptional regulat 23.7 1.4E+02 0.0047 29.7 6.7 99 445-545 48-174 (264)
374 3kht_A Response regulator; PSI 23.6 1.8E+02 0.0061 24.3 6.7 80 479-566 4-91 (144)
375 1fmc_A 7 alpha-hydroxysteroid 23.6 4.2E+02 0.014 24.6 9.9 106 454-563 10-144 (255)
376 3kcn_A Adenylate cyclase homol 23.5 1.5E+02 0.0051 25.2 6.2 58 453-514 25-85 (151)
377 1omo_A Alanine dehydrogenase; 23.5 3.7E+02 0.013 27.2 10.1 74 453-531 123-196 (322)
378 2qbu_A Precorrin-2 methyltrans 23.4 2E+02 0.0067 27.3 7.6 48 473-521 89-139 (232)
379 3ppl_A Aspartate aminotransfer 23.3 4.4E+02 0.015 26.7 10.7 99 452-561 93-220 (427)
380 2fnu_A Aminotransferase; prote 23.3 1.9E+02 0.0063 28.4 7.6 94 456-561 49-153 (375)
381 2iss_D Glutamine amidotransfer 23.3 93 0.0032 29.3 5.2 81 478-567 18-102 (208)
382 2r25_B Osmosensing histidine p 23.2 1.8E+02 0.0061 24.2 6.5 57 457-513 29-89 (133)
383 2a9v_A GMP synthase; structura 23.2 83 0.0028 30.0 4.8 81 480-564 13-93 (212)
384 3gt7_A Sensor protein; structu 23.2 2.3E+02 0.0078 24.2 7.4 80 479-566 6-91 (154)
385 1bs0_A Protein (8-amino-7-oxon 23.1 3.7E+02 0.013 26.5 9.9 97 456-561 101-203 (384)
386 2jis_A Cysteine sulfinic acid 23.1 6.4E+02 0.022 26.6 12.3 103 454-562 165-295 (515)
387 1wta_A 5'-methylthioadenosine 23.0 2.3E+02 0.0079 28.4 8.3 73 462-565 141-217 (275)
388 1meo_A Phosophoribosylglycinam 23.0 1.7E+02 0.0058 28.4 7.0 70 457-530 4-87 (209)
389 2qr3_A Two-component system re 23.0 1.7E+02 0.0058 24.1 6.3 84 480-566 3-90 (140)
390 2rh8_A Anthocyanidin reductase 22.8 3.8E+02 0.013 26.1 9.8 108 455-565 9-131 (338)
391 1e3j_A NADP(H)-dependent ketos 22.8 2.1E+02 0.0072 28.8 8.1 54 451-511 165-218 (352)
392 3qvo_A NMRA family protein; st 22.7 2.2E+02 0.0074 26.7 7.7 98 456-565 24-125 (236)
393 1s8n_A Putative antiterminator 22.6 2.8E+02 0.0097 24.9 8.2 80 479-566 12-95 (205)
394 1eq2_A ADP-L-glycero-D-mannohe 22.5 2.1E+02 0.0071 27.4 7.7 104 457-564 1-116 (310)
395 3ruy_A Ornithine aminotransfer 22.5 3.7E+02 0.013 26.7 9.8 39 522-561 182-221 (392)
396 1n2s_A DTDP-4-, DTDP-glucose o 22.5 1.3E+02 0.0044 28.9 6.2 94 457-565 2-105 (299)
397 2xci_A KDO-transferase, 3-deox 22.5 2.5E+02 0.0084 28.7 8.6 75 477-561 222-307 (374)
398 3n8i_A Low molecular weight ph 22.4 97 0.0033 28.6 5.0 75 457-531 7-93 (157)
399 2wsi_A FAD synthetase; transfe 22.4 5.9E+02 0.02 25.7 11.3 55 478-532 99-167 (306)
400 1a9x_B Carbamoyl phosphate syn 22.4 1.6E+02 0.0054 31.3 7.2 74 480-563 190-268 (379)
401 3frk_A QDTB; aminotransferase, 22.4 1.2E+02 0.0043 30.0 6.2 94 456-561 53-156 (373)
402 3i42_A Response regulator rece 22.4 2.1E+02 0.0072 23.2 6.7 79 480-566 3-87 (127)
403 2x6t_A ADP-L-glycero-D-manno-h 22.3 1.8E+02 0.0061 28.9 7.3 106 455-564 46-163 (357)
404 3ay3_A NAD-dependent epimerase 22.3 90 0.0031 29.8 4.9 96 457-565 4-110 (267)
405 3rq1_A Aminotransferase class 22.2 4E+02 0.014 26.8 10.0 100 456-561 104-224 (418)
406 3goh_A Alcohol dehydrogenase, 22.1 1.1E+02 0.0039 30.2 5.8 52 451-510 139-190 (315)
407 2a8y_A 5'-methylthioadenosine 22.1 2.5E+02 0.0086 28.1 8.3 73 462-565 136-212 (270)
408 2xzm_K RPS14E; ribosome, trans 22.1 1.9E+02 0.0063 27.2 6.8 47 468-514 79-132 (151)
409 1p0f_A NADP-dependent alcohol 22.0 2.9E+02 0.01 28.0 9.0 55 451-511 188-242 (373)
410 2jhf_A Alcohol dehydrogenase E 21.9 3.1E+02 0.01 27.8 9.1 54 451-510 188-241 (374)
411 5nul_A Flavodoxin; electron tr 21.9 1.7E+02 0.0058 25.1 6.2 64 498-563 20-86 (138)
412 3grc_A Sensor protein, kinase; 21.8 2.6E+02 0.0088 23.1 7.2 79 480-566 6-90 (140)
413 3mm4_A Histidine kinase homolo 21.8 2.9E+02 0.0099 25.3 8.2 78 479-564 60-159 (206)
414 1vgv_A UDP-N-acetylglucosamine 21.8 2.5E+02 0.0086 27.6 8.3 76 471-562 229-307 (384)
415 2ggs_A 273AA long hypothetical 21.7 1E+02 0.0036 29.1 5.2 97 457-565 2-108 (273)
416 1o4s_A Aspartate aminotransfer 21.7 3.9E+02 0.013 26.6 9.8 101 454-561 101-212 (389)
417 3u7q_B Nitrogenase molybdenum- 21.7 8.2E+02 0.028 26.8 17.6 97 454-563 363-470 (523)
418 3hn7_A UDP-N-acetylmuramate-L- 21.6 2.3E+02 0.0077 30.9 8.4 70 454-530 18-88 (524)
419 2r85_A PURP protein PF1517; AT 21.5 1.2E+02 0.0042 29.7 5.9 30 457-489 4-33 (334)
420 3czc_A RMPB; alpha/beta sandwi 21.4 2.6E+02 0.009 23.9 7.3 56 456-532 19-77 (110)
421 1rpn_A GDP-mannose 4,6-dehydra 21.4 90 0.0031 30.6 4.8 109 454-565 13-138 (335)
422 2f9f_A First mannosyl transfer 21.3 3E+02 0.01 24.3 8.0 97 454-562 22-127 (177)
423 3d6k_A Putative aminotransfera 21.2 5.5E+02 0.019 26.0 10.9 106 452-561 91-218 (422)
424 2xhz_A KDSD, YRBH, arabinose 5 21.2 2.4E+02 0.0081 25.4 7.4 62 497-565 67-132 (183)
425 3jzl_A Putative cystathionine 21.2 3.1E+02 0.011 28.7 9.2 90 465-561 88-200 (409)
426 1yio_A Response regulatory pro 21.1 2.9E+02 0.01 24.7 7.9 79 480-566 4-86 (208)
427 3ps9_A TRNA 5-methylaminomethy 21.0 1.8E+02 0.006 32.4 7.6 66 446-513 203-303 (676)
428 1pl8_A Human sorbitol dehydrog 21.0 2.4E+02 0.0083 28.5 8.1 55 451-511 168-222 (356)
429 4b8w_A GDP-L-fucose synthase; 21.0 80 0.0027 30.2 4.2 52 515-566 52-114 (319)
430 1e3i_A Alcohol dehydrogenase, 20.9 3.2E+02 0.011 27.7 9.0 54 451-510 192-245 (376)
431 3ip1_A Alcohol dehydrogenase, 20.8 2.8E+02 0.0095 28.6 8.7 54 451-510 210-263 (404)
432 3fxa_A SIS domain protein; str 20.8 1.2E+02 0.0042 28.0 5.4 89 446-565 35-128 (201)
433 2c5a_A GDP-mannose-3', 5'-epim 20.8 4.1E+02 0.014 26.7 9.8 104 455-565 29-145 (379)
434 3t18_A Aminotransferase class 20.8 4.1E+02 0.014 26.6 9.8 100 456-561 103-223 (413)
435 3nzo_A UDP-N-acetylglucosamine 20.8 6.3E+02 0.022 25.9 11.4 109 455-565 35-165 (399)
436 1mb3_A Cell division response 20.7 3.3E+02 0.011 21.8 8.1 76 482-565 3-84 (124)
437 3osu_A 3-oxoacyl-[acyl-carrier 20.7 2E+02 0.0068 27.2 7.0 105 455-562 4-138 (246)
438 2w8t_A SPT, serine palmitoyltr 20.6 6.8E+02 0.023 25.4 12.9 95 456-561 126-229 (427)
439 4etn_A LMPTP, low molecular we 20.6 1.2E+02 0.004 29.0 5.2 72 457-530 36-118 (184)
440 1tcv_A Purine-nucleoside phosp 20.6 1.9E+02 0.0064 29.5 7.1 75 460-566 165-244 (287)
441 3op7_A Aminotransferase class 20.5 2.5E+02 0.0084 27.8 7.9 100 455-561 82-192 (375)
442 1uuf_A YAHK, zinc-type alcohol 20.5 1.8E+02 0.0062 29.8 7.1 53 451-510 191-243 (369)
443 2cf5_A Atccad5, CAD, cinnamyl 20.5 2.6E+02 0.0089 28.3 8.2 55 452-512 177-232 (357)
444 3sxp_A ADP-L-glycero-D-mannohe 20.5 2.1E+02 0.0073 28.4 7.5 109 454-564 9-138 (362)
445 3vh1_A Ubiquitin-like modifier 20.5 8E+02 0.027 27.7 12.7 103 450-562 323-463 (598)
446 1g0o_A Trihydroxynaphthalene r 20.4 2.3E+02 0.0078 27.5 7.5 99 454-555 28-152 (283)
447 3k5i_A Phosphoribosyl-aminoimi 20.3 1.7E+02 0.006 30.4 7.0 78 451-533 20-97 (403)
448 3lkv_A Uncharacterized conserv 20.3 46 0.0016 33.0 2.5 39 520-565 191-229 (302)
449 3cnb_A DNA-binding response re 20.3 2.2E+02 0.0074 23.5 6.4 80 479-566 7-94 (143)
450 2vsy_A XCC0866; transferase, g 20.3 5.4E+02 0.019 27.0 10.9 97 454-563 375-483 (568)
451 1z45_A GAL10 bifunctional prot 20.2 2.8E+02 0.0096 30.7 9.0 109 455-565 11-135 (699)
452 3f0h_A Aminotransferase; RER07 20.2 4.3E+02 0.015 25.8 9.6 98 456-561 72-179 (376)
453 3euc_A Histidinol-phosphate am 20.1 4.2E+02 0.014 26.0 9.5 100 455-561 86-197 (367)
454 2qsj_A DNA-binding response re 20.1 2.6E+02 0.0089 23.6 7.0 79 480-566 3-88 (154)
No 1
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein structure initiative eukaryotic initiation factor; 2.10A {Leishmania major} SCOP: c.124.1.5
Probab=100.00 E-value=1e-66 Score=556.49 Aligned_cols=302 Identities=17% Similarity=0.214 Sum_probs=279.2
Q ss_pred Ccceec--ccCCCceecccCcchhhhhhcccchhHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHccCCCCCccchH
Q 006577 298 NRVELF--RHLPQYEHGTQLPVLQSKFFQLDTLHPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSR 375 (640)
Q Consensus 298 ~~V~lf--~hLP~~~~~~~l~~~e~~~~ai~~mhPavv~Lgl~~~rGa~~Gsnaraiaml~Alk~vI~dy~~p~~~t~sr 375 (640)
..|.|| +.||+++.|+.|.++++++.+|+.|. + ||++.++.++|++|+++++++.....|. ..+
T Consensus 26 ~~l~ildq~~lP~~~~~~~~~~~~~~~~aIk~m~---V-------rGApaIgiaaa~~l~l~~~~~~~~~~~~----~~~ 91 (383)
T 2a0u_A 26 GSLRLLDQRKLPLETVFDDVLTVEDIWSAIKEMR---V-------RGAPAIAVSAALGIAVATQRKAANGELK----SGR 91 (383)
T ss_dssp TEEEEECTTTTTTCCCEEEECSHHHHHHHHHTTS---S-------CSHHHHHHHHHHHHHHHHHHHHHHSSCC----CHH
T ss_pred CEEEEEecCCCCCceEEEEcCCHHHHHHHHHhCC---C-------CCcHHHHHHHHHHHHHHHHhhcccccCC----CHH
Confidence 469999 99999999999999999999999999 8 9999999999999999999987654442 367
Q ss_pred HHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--
Q 006577 376 DLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIR-- 453 (640)
Q Consensus 376 dL~~~L~~~i~~L~~aRPtsvsm~NAIr~lk~~I~~l~~~~~~~eaK~~L~e~Id~fi~E~i~~A~~~Ia~~a~~~I~-- 453 (640)
+|.+.|+..+++|.++|||++||+|++++|++.++....+.+.+++|+.+++.+++|++|+ ..+++.|+++|+++|.
T Consensus 92 ~l~~~l~~~~~~L~~aRPtavnL~na~~r~~~~i~~~~~~~~~~~~k~~l~~~a~~i~~e~-~~~~~~I~~~g~~~I~~~ 170 (383)
T 2a0u_A 92 EVQTFLLTSCDFVMTSRPTAVNLFNCLRDLKAQVDKLDPTKAAAEVAQAFVELAEAVYTND-VAFNEGIMRHGAAHILAA 170 (383)
T ss_dssp HHHHHHHHHHHHHTTSCCSCSHHHHHHHHHHHHHHHSCTTSCSHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhh
Confidence 8999999999999999999999999999999999864333467899999999999999996 5799999999999999
Q ss_pred ------CCCEEEeecCc--------HHHHHHHHHHHHcCCeeEEEEcCCCCCchHHH-HHHHHHhCCCceEEEechHHHH
Q 006577 454 ------DGDVLLTYGSS--------SAVEMILQHAHELGKQFRVVIVDSRPKHEGKL-LLRRLVRKGLSCTYTHINAISY 518 (640)
Q Consensus 454 ------dgdvILT~g~S--------stV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~-La~eL~~~GI~vTlI~DsAv~~ 518 (640)
+|++||||||| ++|+++|+.|+++|++|+|||+||||++||.+ ++|+|.+.||+||||+|||++|
T Consensus 171 ~~~~~~~g~~ILThcnsg~Lat~g~gTal~~l~~A~~~gk~~~V~v~EtRP~~qGarltA~eL~~~GIpvtlI~Dsa~~~ 250 (383)
T 2a0u_A 171 AKAEGRDKVSILTICNTGALATSRYGTALGVVRQLFYDGKLERVYACETRPWNQGARLTVYECVQEDIPCTLICDGAASS 250 (383)
T ss_dssp HHHTTCSSEEEEECSCCSTTTSSSSCSHHHHHHHHHHTTCEEEEEEECCTTTTHHHHTHHHHHHHTTCCEEEECGGGHHH
T ss_pred ccccCCCCCEEEEecCCcchhcCCCchHHHHHHHHHHcCCeEEEEEeCCCCccchHHHHHHHHHHcCCCEEEEehhHHHH
Confidence 99999999998 58999999999999999999999999999986 5699999999999999999999
Q ss_pred Hhhh--ccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEecccccccccccCCCcccccccCccCcccC--CCC
Q 006577 519 IIHE--VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGMHSKNMGT--PNT 594 (640)
Q Consensus 519 iM~~--VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~aetyKf~~~~~~ds~i~nElrdP~Evl~~--~g~ 594 (640)
+|++ ||+||||||+|++||+++||+|||++|++||+||||||||||+|||++.++.|..+.||+|+|+|++.+ .|.
T Consensus 251 ~M~~~~Vd~ViVGAD~V~aNG~v~NKiGTy~lAl~Ak~~~vPfyV~ap~~k~d~~~~~g~~i~iEer~~~Ev~~~~~~g~ 330 (383)
T 2a0u_A 251 LMLNRKIDAVVVGADRICQNGDTANKIGTYNLAVSAKFHGVKLYVAAPTTTLDVKTASGNHVEIEEREPTEITTNLVTKQ 330 (383)
T ss_dssp HHHHSCCCEEEECCSEECTTCCEEEETTHHHHHHHHHHTTCCEEEECCGGGBCTTCCSGGGSCCCBCCTHHHHBCTTTCC
T ss_pred HhhcCCCCEEEECccEEecCCCEeecccHHHHHHHHHHcCCCEEEeCCcceecCcCCCccccccccCCHHHhcccccCCc
Confidence 9998 999999999999999999999999999999999999999999999999999999999999999999987 565
Q ss_pred Ccc-----cCccccccccCCCCccc
Q 006577 595 SFR-----THALWLLIQVSCLQVIL 614 (640)
Q Consensus 595 ~~~-----~~~~nPaFDVTP~eli~ 614 (640)
... ..++||+|||||++||.
T Consensus 331 ~~a~~~~~v~v~NPaFDvTP~~lIt 355 (383)
T 2a0u_A 331 RVVADGPHLSIWNPVFDITPSELIT 355 (383)
T ss_dssp BCSCCCTTEEECCBSEEEECGGGCC
T ss_pred eecCCCCceeeecccccccChHHCC
Confidence 442 46799999999998887
No 2
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A*
Probab=100.00 E-value=6.6e-67 Score=556.50 Aligned_cols=294 Identities=18% Similarity=0.252 Sum_probs=272.5
Q ss_pred Ccceec--ccCCCceecccCcchhhhhhcccchhHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHccCCCCCccchH
Q 006577 298 NRVELF--RHLPQYEHGTQLPVLQSKFFQLDTLHPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSR 375 (640)
Q Consensus 298 ~~V~lf--~hLP~~~~~~~l~~~e~~~~ai~~mhPavv~Lgl~~~rGa~~Gsnaraiaml~Alk~vI~dy~~p~~~t~sr 375 (640)
..|.|| +.||++++|+.|.++++++.+|+.|. + ||++.++.++|++|++++++.. . ...+
T Consensus 37 ~~l~ilDq~~lP~~~~~~~~~~~~~~~~aIk~m~---V-------rGApaIgiaaa~~l~l~~~~~~--~------~~~~ 98 (374)
T 2yvk_A 37 TAITILNQQKLPDETEYLELTTKEDVFDAIVTLK---V-------RGAPAIGITAAFGLALAAKDIE--T------DNVT 98 (374)
T ss_dssp SCEEEECGGGTTTCCCEEEECSHHHHHHHHHTTS---S-------CSHHHHHHHHHHHHHHHHTTCC--C------SCHH
T ss_pred CEEEEEecCCCCCeEEEEEeCCHHHHHHHHHhCc---c-------CCcHHHHHHHHHHHHHHHHhcc--C------CCHH
Confidence 469999 99999999999999999999999999 8 9999999999999999987642 1 2467
Q ss_pred HHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 006577 376 DLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDG 455 (640)
Q Consensus 376 dL~~~L~~~i~~L~~aRPtsvsm~NAIr~lk~~I~~l~~~~~~~eaK~~L~e~Id~fi~E~i~~A~~~Ia~~a~~~I~dg 455 (640)
+|.+.|+.++++|.++|||++||+|++++|++.+.+. .+.+++|+.+++.+++|++|+ ..+++.|+++|+++|++|
T Consensus 99 ~l~~~l~~~~~~L~~aRPtavnL~~ai~r~~~~i~~~---~~~~~~k~~l~~~a~~~~~e~-~~~~~~I~~~g~~~I~~g 174 (374)
T 2yvk_A 99 EFRRRLEDIKQYLNSSRPTAINLSWALERLSHSVENA---ISVNEAKTNLVHEAIQIQVED-EETCRLIGQNALQLFKKG 174 (374)
T ss_dssp HHHHHHHHHHHHHHTTCSSCHHHHHHHHHHHHHTTTC---SSHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHGGGCCTT
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCC
Confidence 8999999999999999999999999999999988643 468899999999999999986 579999999999999999
Q ss_pred CEEEeecCc--------HHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHH-HHHHHhCCCceEEEechHHHHHhhh--cc
Q 006577 456 DVLLTYGSS--------SAVEMILQHAHELGKQFRVVIVDSRPKHEGKLL-LRRLVRKGLSCTYTHINAISYIIHE--VT 524 (640)
Q Consensus 456 dvILT~g~S--------stV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~L-a~eL~~~GI~vTlI~DsAv~~iM~~--Vd 524 (640)
++||||||| ++|+++|+.|+++|++|+|||+||||++||.+| +|+|.+.||+||||+|||++|+|++ ||
T Consensus 175 ~~ILThcnsg~Lat~g~gTal~~l~~A~~~gk~~~V~v~EtRP~~qG~rltA~eL~~~GIpvtlI~Dsa~~~~M~~~~Vd 254 (374)
T 2yvk_A 175 DRIMTICNAGSIATSRYGTALAPFYLAKQKDLGLHIYACETRPVLQGSRLTAWELMQGGIDVTLITDSMAAHTMKEKQIS 254 (374)
T ss_dssp CEEEECSCCSTTTSSSSCSTTHHHHHHHHTTCCCEEEEECCTTTTHHHHTHHHHHHTTTCEEEEECGGGHHHHHHHTTCC
T ss_pred CEEEEecCCCccccCCCcHHHHHHHHHHHcCCEEEEEEeCCCCccccHHHHHHHHHHcCCCEEEEehhHHHHHhhhcCCC
Confidence 999999998 579999999999999999999999999999875 6999999999999999999999998 99
Q ss_pred EEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEecccccccccccCCCcccccccCccCcccCCCCCc---ccCcc
Q 006577 525 RVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGMHSKNMGTPNTSF---RTHAL 601 (640)
Q Consensus 525 kVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~aetyKf~~~~~~ds~i~nElrdP~Evl~~~g~~~---~~~~~ 601 (640)
+||||||+|++||+++||+|||++|++||+||||||||||+|||++.++.|..+.||+|+|+|++.+.|... ...++
T Consensus 255 ~ViVGAD~V~aNG~v~NKiGTy~lAl~Ak~~~vPfyV~ap~~k~d~~~~~g~~i~iEer~~~Ev~~~~g~~~~~~~v~v~ 334 (374)
T 2yvk_A 255 AVIVGADRIAKNGDTANKIGTYGLAILANAFDIPFFVAAPLSTFDTKVKCGADIPIEERDPEEVRQISGVRTAPSNVPVF 334 (374)
T ss_dssp EEEECCSEEETTCCEEEETTHHHHHHHHHHTTCCEEEECCGGGEETTCSSGGGSCCCBCCTHHHHEETTEECSCTTCCBC
T ss_pred EEEECccEEecCCCEEecccHHHHHHHHHHcCCCEEEecccceeCccCCCccccccccCCHHHhcccCCceecCCCccee
Confidence 999999999999999999999999999999999999999999999999999999999999999998876544 34789
Q ss_pred ccccccCCCCcc
Q 006577 602 WLLIQVSCLQVI 613 (640)
Q Consensus 602 nPaFDVTP~eli 613 (640)
||+|||||++||
T Consensus 335 NPaFDvTP~~lI 346 (374)
T 2yvk_A 335 NPAFDITPHDLI 346 (374)
T ss_dssp CBSEEEECGGGC
T ss_pred CcceeccCHHHC
Confidence 999999999655
No 3
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5
Probab=100.00 E-value=2.7e-66 Score=547.42 Aligned_cols=298 Identities=19% Similarity=0.230 Sum_probs=271.6
Q ss_pred Ccceec--ccCCCceecccCcchhhhhhcccchhHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHccCCCCCccchH
Q 006577 298 NRVELF--RHLPQYEHGTQLPVLQSKFFQLDTLHPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSR 375 (640)
Q Consensus 298 ~~V~lf--~hLP~~~~~~~l~~~e~~~~ai~~mhPavv~Lgl~~~rGa~~Gsnaraiaml~Alk~vI~dy~~p~~~t~sr 375 (640)
..|.|| +.||++++|+.|.++++.+.+|++|+ + ||++.++.++|++|++++++... . .
T Consensus 15 ~~~~~ldq~~lP~~~~~~~~~~~~~~~~aIk~m~---V-------rGAp~ig~aaa~~l~l~~~~~~~--~------~-- 74 (347)
T 1t9k_A 15 NSLKLLDQRKLPFIEEYVECKTHEEVAHAIKEMI---V-------RGAPAIGVAAAFGYVLGLRDYKT--G------S-- 74 (347)
T ss_dssp SCEEEECTTTTTTCCCEEEECSHHHHHHHHHHTS---S-------CSHHHHHHHHHHHHHHHHHTCCS--S------C--
T ss_pred CEEEEEeCCCCCCceEEEEeCCHHHHHHHHHhCC---c-------CCcHHHHHHHHHHHHHHHHhccc--C------C--
Confidence 469999 99999999999999999999999999 8 99999999999999999987431 1 1
Q ss_pred HHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 006577 376 DLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDG 455 (640)
Q Consensus 376 dL~~~L~~~i~~L~~aRPtsvsm~NAIr~lk~~I~~l~~~~~~~eaK~~L~e~Id~fi~E~i~~A~~~Ia~~a~~~I~dg 455 (640)
..++|+.++++|.++|||++||+|++++|++.+.+.. +.+++|+.+++.+++|++|. ..+++.|+++++++|++|
T Consensus 75 -~~~~l~~~~~~L~~aRPtav~l~~a~~~~~~~i~~~~---~~~~~k~~l~~~~~~~~~e~-~~~~~~I~~~g~~~I~~g 149 (347)
T 1t9k_A 75 -LTDWMKQVKETLARTRPTAVNLFWALNRMEKVFFENA---DRENLFEILENEALKMAYED-IEVNKAIGKNGAQLIKDG 149 (347)
T ss_dssp -HHHHHHHHHHHHHTSCSSCTHHHHHHHHHHHHHHTTT---TCTTHHHHHHHHHHHHHHHH-HHHHHHHHHHHHTTSCTT
T ss_pred -HHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCC
Confidence 1255999999999999999999999999999997542 45679999999999999986 578999999999999999
Q ss_pred CEEEeecCcH--------HHHHHHHHHHHcCCeeEEEEcCCCCCchHHHH-HHHHHhCCCceEEEechHHHHHhhh--cc
Q 006577 456 DVLLTYGSSS--------AVEMILQHAHELGKQFRVVIVDSRPKHEGKLL-LRRLVRKGLSCTYTHINAISYIIHE--VT 524 (640)
Q Consensus 456 dvILT~g~Ss--------tV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~L-a~eL~~~GI~vTlI~DsAv~~iM~~--Vd 524 (640)
++|||||||+ +|+++|+.|+++|++|+|||+||||++||.+| +|+|.+.||+||||+|||++|+|++ ||
T Consensus 150 ~~ILThcns~~lat~~~gtvl~~l~~A~~~gk~~~V~v~EtRP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~M~~~~Vd 229 (347)
T 1t9k_A 150 STILTHCNAGALATVDYGTALGVIRAAVESGKRIRVFADETRPYLQGARLTAWELMKDGIEVYVITDNMAGWLMKRGLID 229 (347)
T ss_dssp EEEEECSCCSGGGSSSSCSHHHHHHHHHHTTCCEEEEEECCTTTTHHHHTHHHHHHTTTCEEEEECGGGHHHHHHTTCCS
T ss_pred CEEEEecCCCccccCCccHHHHHHHHHHHCCCeEEEEEeCCCCccccHHHHHHHHHhCCCCEEEEehhHHHHHhhcCCCC
Confidence 9999999999 99999999999999999999999999999875 6999999999999999999999987 99
Q ss_pred EEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEecccccccccccCCCcccccccCccCcccCCCCCcc---cCcc
Q 006577 525 RVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGMHSKNMGTPNTSFR---THAL 601 (640)
Q Consensus 525 kVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~aetyKf~~~~~~ds~i~nElrdP~Evl~~~g~~~~---~~~~ 601 (640)
+||||||+|++||+++||+|||++|++||+|+||||||||+|||++.++.+..+.||+|+|+|++.+.|.... ..++
T Consensus 230 ~VivGAd~V~aNG~v~NKiGT~~lAl~Ak~~~vPfyV~ap~~k~d~~~~~g~~i~iE~r~~~ev~~~~g~~~~~~~v~v~ 309 (347)
T 1t9k_A 230 AVVVGADRIALNGDTANKIGTYSLAVLAKRNNIPFYVAAPVSTIDPTIRSGEEIPIEERRPEEVTHCGGNRIAPEGVKVL 309 (347)
T ss_dssp EEEECCSEEETTSCEEEETTHHHHHHHHHHTTCCEEEECCGGGEETTCSSGGGSCCCBCCTHHHHEETTEECSCTTCEEC
T ss_pred EEEECccEEecCCCEEecccHHHHHHHHHHcCCCEEEecccceeccccCCccccccccCChHhccccCCeeccCCCcccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999988765443 3689
Q ss_pred ccccccCCCCcc--------cccchhh
Q 006577 602 WLLIQVSCLQVI--------LIPFQRF 620 (640)
Q Consensus 602 nPaFDVTP~eli--------~iP~s~~ 620 (640)
||+|||||++|| +++++..
T Consensus 310 NPaFDvTP~~lIt~iITE~Gv~~p~~~ 336 (347)
T 1t9k_A 310 NPAFDVTENTLITAIITEKGVIRPPFE 336 (347)
T ss_dssp CBSEEEECGGGCSEEEETTEEECSSHH
T ss_pred CcccccCCHHHCCEEeccCCccCcchH
Confidence 999999999655 5566653
No 4
>3a11_A Translation initiation factor EIF-2B, delta subun; isomerase, hexamer, rossmann fold; 2.50A {Thermococcus kodakaraensis} PDB: 3a9c_A* 3vm6_A*
Probab=100.00 E-value=1.2e-65 Score=540.85 Aligned_cols=298 Identities=20% Similarity=0.283 Sum_probs=263.0
Q ss_pred ceecccCcchhhhhhcccchhHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHccCCCCCccchHHHHHHHHHHHHHH
Q 006577 309 YEHGTQLPVLQSKFFQLDTLHPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFL 388 (640)
Q Consensus 309 ~~~~~~l~~~e~~~~ai~~mhPavv~Lgl~~~rGa~~Gsnaraiaml~Alk~vI~dy~~p~~~t~srdL~~~L~~~i~~L 388 (640)
-.+|+.|.++++.+.+|+.|+ + ||++.++.+++++|.+++++ +.+. ...+|.+.|+.++++|
T Consensus 14 ~~~~~~~~~~~~~~~aI~~m~---V-------rGApai~iaaa~~l~~~~~~----~~~~----~~~~l~~~l~~~~~~L 75 (338)
T 3a11_A 14 GRHMAVVKEVLEIAEKIKNME---I-------RGAGKIARSAAYALQLQAEK----SKAT----NVDEFWKEMKQAAKIL 75 (338)
T ss_dssp -----CCSHHHHHHHHHHTCS---S-------CSHHHHHHHHHHHHHHHHHH----CCCC----SHHHHHHHHHHHHHHH
T ss_pred eEEEEEeCCHHHHHHHHHhCc---E-------eCcHHHHHHHHHHHHHHHHh----ccCC----CHHHHHHHHHHHHHHH
Confidence 457788999999999999999 8 89988887777777776654 3321 3578999999999999
Q ss_pred HhcCCccccHHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEeecCcHHH
Q 006577 389 IDCRPLSVSMGNAIRFLKSQIAK-IPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAV 467 (640)
Q Consensus 389 ~~aRPtsvsm~NAIr~lk~~I~~-l~~~~~~~eaK~~L~e~Id~fi~E~i~~A~~~Ia~~a~~~I~dgdvILT~g~SstV 467 (640)
.++|||++||+|++++|++.++. +....+.+++|+.+++.+++|++|. ..+++.|+++|+++|++|++|||||||++|
T Consensus 76 ~~aRPtav~L~~a~~~~~~~i~~~~~~~~~~~~~k~~l~~~a~~~~~e~-~~~~~~I~~~g~~~I~~g~~ILTh~~S~tv 154 (338)
T 3a11_A 76 FETRPTAVSLPNALRYVMHRGKIAYSSGADLEQLRFVIINAAKEFIHNS-EKALERIGEFGAKRIEDGDVIMTHCHSKAA 154 (338)
T ss_dssp HTTCTTCSHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHTTCCTTCEEEECSCCHHH
T ss_pred HHhCCChHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCCEEEEeCCcHHH
Confidence 99999999999999999999875 1223478899999999999999996 578999999999999999999999999999
Q ss_pred HHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEcceeEecCCCeecccchHH
Q 006577 468 EMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTAC 547 (640)
Q Consensus 468 ~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGADaIlaNG~VvNKiGT~~ 547 (640)
+++|+.|+++|++|+|||+||||++||+.++++|.+.||+||||+|||++|+|++||+||||||+|++||+++||+|||+
T Consensus 155 l~~l~~A~~~gk~~~V~v~EtRP~~qGrltA~eL~~~GI~vtlI~Dsa~~~~M~~Vd~VivGAd~V~anG~v~NKiGT~~ 234 (338)
T 3a11_A 155 ISVMKTAWEQGKDIKVIVTETRPKWQGKITAKELASYGIPVIYVVDSAARHYMKMTDKVVMGADSITVNGAVINKIGTAL 234 (338)
T ss_dssp HHHHHHHHHTTCCCEEEEECCTTTTHHHHHHHHHHHTTCCEEEECGGGTTTTGGGCSEEEECCSEECTTSCEEEETTHHH
T ss_pred HHHHHHHHHCCCeEEEEEeCCCCchhhHHHHHHHHhCCCCEEEEehHHHHHHHHhCCEEEECccEEecCCCEeecccHHH
Confidence 99999999999999999999999999987789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCcEEEecccccccccccCCCcccccccCccCcccCCCCCc----ccCccccccccCCCCc--------ccc
Q 006577 548 VAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGMHSKNMGTPNTSF----RTHALWLLIQVSCLQV--------ILI 615 (640)
Q Consensus 548 lAlaAk~~~VPVyV~aetyKf~~~~~~ds~i~nElrdP~Evl~~~g~~~----~~~~~nPaFDVTP~el--------i~i 615 (640)
+|++||+||||||||||+|||++.++.|.++.||+|+|+|++.+ |... ...++||+|||||++| |++
T Consensus 235 lAl~Ak~~~vPfyV~a~~~k~d~~~~~g~~i~iE~r~~~ev~~~-g~~~~w~~~v~v~NPaFDvTP~~lIt~iITE~Gv~ 313 (338)
T 3a11_A 235 IALTAKEHRVWTMIAAETYKFHPETMLGQLVEIEMRDPTEVIPE-DELKTWPKNIEVWNPAFDVTPPEYVDVIITERGII 313 (338)
T ss_dssp HHHHHHHTTCEEEEECCGGGBCSCCSSSSCCCCCBCCGGGTSCH-HHHTTSCTTEEECCBSEEEECGGGCSEEEETTEEE
T ss_pred HHHHHHHcCCCEEEecccceecccCCCCcccccccCCHHHcccc-cccccCCCCceecCcceeccCHHHcCEEecCCCcc
Confidence 99999999999999999999999999999999999999999976 4322 2368999999999955 466
Q ss_pred cchh---hhhcccc
Q 006577 616 PFQR---FLGERTS 626 (640)
Q Consensus 616 P~s~---~~~~~~~ 626 (640)
++++ +++||+.
T Consensus 314 ~p~~v~~~L~e~y~ 327 (338)
T 3a11_A 314 PPYAAIDILREEFG 327 (338)
T ss_dssp CGGGHHHHHHHHHC
T ss_pred CchhHHHHHHHHhC
Confidence 7777 5555554
No 5
>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit delta, structural GEN PSI, protein structure initiative; 1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5
Probab=100.00 E-value=6.1e-66 Score=545.37 Aligned_cols=303 Identities=19% Similarity=0.241 Sum_probs=275.1
Q ss_pred ceec--ccCCCceecccCcchhhhhhcccchhHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHccCCCCCccchHHH
Q 006577 300 VELF--RHLPQYEHGTQLPVLQSKFFQLDTLHPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDL 377 (640)
Q Consensus 300 V~lf--~hLP~~~~~~~l~~~e~~~~ai~~mhPavv~Lgl~~~rGa~~Gsnaraiaml~Alk~vI~dy~~p~~~t~srdL 377 (640)
|.|| +.||++++|+.|.++++++.+|+.|. + ||++.++.++|++|++++++.. + ....+|
T Consensus 12 l~~ldq~~lP~~~~~~~~~~~~~~~~aIk~m~---V-------rGApai~iaaa~~l~l~~~~~~----~----~~~~~l 73 (351)
T 1t5o_A 12 LKLIDQTKLPEKLEVIECRNVEELADAIKKLA---V-------RGAPALEAAGAYGIALAARERE----F----ADVDEL 73 (351)
T ss_dssp EEEECGGGTTTCCCEEEECSHHHHHHHHHTTS---S-------CSHHHHHHHHHHHHHHHTTSSC----C----SCHHHH
T ss_pred EEEEecCCCCCeEEEEEeCCHHHHHHHHHhCC---c-------CCcHHHHHHHHHHHHHHHHhcc----C----CCHHHH
Confidence 8999 99999999999999999999999999 8 9999999999999999887531 1 246789
Q ss_pred HHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCE
Q 006577 378 TAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDV 457 (640)
Q Consensus 378 ~~~L~~~i~~L~~aRPtsvsm~NAIr~lk~~I~~l~~~~~~~eaK~~L~e~Id~fi~E~i~~A~~~Ia~~a~~~I~dgdv 457 (640)
.+.|+.++++|.++|||++||+|++++|++.+.+ ..+.+++|+.+++.+++|++|. ..+++.|+++|+++|++|++
T Consensus 74 ~~~l~~~~~~L~~aRPtav~l~~a~~~~~~~i~~---~~~~~~~k~~l~~~~~~~~~e~-~~~~~~I~~~g~~~I~~g~~ 149 (351)
T 1t5o_A 74 KEHLKKAADFLASTRPTAVNLFVGIERALNAALK---GESVEEVKELALREAEKLAEED-VERNRKMGEYGAELLEDGDV 149 (351)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHTT---CSSHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHTTCCTTCE
T ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhh---cCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCCE
Confidence 9999999999999999999999999999999865 2478899999999999999996 57999999999999999999
Q ss_pred EEeecCc--------HHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHH-HHHHHhCCCceEEEechHHHHHhhh--ccEE
Q 006577 458 LLTYGSS--------SAVEMILQHAHELGKQFRVVIVDSRPKHEGKLL-LRRLVRKGLSCTYTHINAISYIIHE--VTRV 526 (640)
Q Consensus 458 ILT~g~S--------stV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~L-a~eL~~~GI~vTlI~DsAv~~iM~~--VdkV 526 (640)
||||||| ++|+++|+.|+++|++|+|||+||||++||.+| +|+|.+.||+||||+|||++|+|++ ||+|
T Consensus 150 ILThcnsg~lat~g~gtal~~l~~A~~~gk~~~V~v~EtRP~~qG~rlta~eL~~~GI~vtlI~Dsa~~~~M~~~~Vd~V 229 (351)
T 1t5o_A 150 VLTYCNAGRLATVDWGTALGVVRSAVEQGKEIRVIACETRPLNQGSRLTCWELMEDGIDVTLITDSMVGIVMQKGMVDKV 229 (351)
T ss_dssp EEECSCCSSSSSSSSCSHHHHHHHHHHTTCCCEEEEECCTTTTHHHHTHHHHHHHTTCCEEEECGGGHHHHHHTTCCSEE
T ss_pred EEEecCCccccccCCChHHHHHHHHHHCCCEEEEEEeCCCcccccHHHHHHHHHhCCCCEEEEehhHHHHHhhcCCCCEE
Confidence 9999987 579999999999999999999999999999875 6999999999999999999999987 9999
Q ss_pred EEcceeEecCCCeecccchHHHHHHHhhCCCcEEEecccccccccccCCCcccccccCccCcccCCCCCcc---cCcccc
Q 006577 527 FLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGMHSKNMGTPNTSFR---THALWL 603 (640)
Q Consensus 527 lvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~aetyKf~~~~~~ds~i~nElrdP~Evl~~~g~~~~---~~~~nP 603 (640)
|||||+|++|| ++||+|||++|++||+|+||||||||+|||++. +.+..+.||+|+|+|++.+.|.... ..++||
T Consensus 230 ivGAd~V~aNG-v~NKiGT~~lAl~Ak~~~vPfyV~a~~~k~d~~-~~g~~i~iEer~~~ev~~~~g~~~~~~~v~v~NP 307 (351)
T 1t5o_A 230 IVGADRIVRDA-VFNKIGTYTVSVVAKHHNIPFYVAAPKATFDWE-RTAKDVVIEERPREELIFCGKRQIAPLNVKVYNP 307 (351)
T ss_dssp EECCSEEETTE-EEEETTHHHHHHHHHHTTCCEEEECCGGGBCTT-CCGGGCCCCBCCTHHHHEETTEECSCTTCEECCB
T ss_pred EECccchhhcC-cccccCHHHHHHHHHHcCCCEEEeCccceeccc-cCCCccccccCCHHHhcccCCeeecCCCcceeCc
Confidence 99999999999 999999999999999999999999999999999 8888899999999999988765443 368999
Q ss_pred ccccCCCCcc--------cccchhhhhccccc
Q 006577 604 LIQVSCLQVI--------LIPFQRFLGERTSI 627 (640)
Q Consensus 604 aFDVTP~eli--------~iP~s~~~~~~~~~ 627 (640)
+|||||++|| +++|++.+ ++.++
T Consensus 308 aFDvTP~~lIt~iITE~Gv~~p~~~~-~l~~~ 338 (351)
T 1t5o_A 308 AFDPTPLENVTALITEYGVIYPPYEV-NVPKV 338 (351)
T ss_dssp SEEEEEGGGCSEEEETTEEECSCHHH-HHHHH
T ss_pred cccCCCHHHCCEEEeCCCccCcchHH-HHHHH
Confidence 9999999555 55776643 34444
No 6
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5
Probab=100.00 E-value=1.3e-57 Score=467.79 Aligned_cols=258 Identities=23% Similarity=0.264 Sum_probs=235.8
Q ss_pred hhHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHccCCCCCccchHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHH
Q 006577 328 LHPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKS 407 (640)
Q Consensus 328 mhPavv~Lgl~~~rGa~~Gsnaraiaml~Alk~vI~dy~~p~~~t~srdL~~~L~~~i~~L~~aRPtsvsm~NAIr~lk~ 407 (640)
+|+.+.++...+++..+.|+.+.|++++.+|..++.++ + ..+|++.|+.++++|.++|||+++|+|++++|
T Consensus 2 l~~~~~~~~~~i~~~~vrGa~~i~~aa~~~l~~~~~~~-~------~~~~~~~l~~~~~~L~~~RPtav~l~~a~~~~-- 72 (276)
T 1vb5_A 2 LPERVLEILREMKRERIKGASWLAKKGAEAFLTLAEEL-D------ESLLEDAIMELREEVVKVNPSMASLYNLARFI-- 72 (276)
T ss_dssp CCHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHS-C------TTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHS--
T ss_pred CcccHHHHHHHHHhCcEeCcHHHHHHHHHHHHHHHHhc-C------HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHc--
Confidence 56677777777777778888888888888888888776 2 24688999999999999999999999999998
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcC
Q 006577 408 QIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVD 487 (640)
Q Consensus 408 ~I~~l~~~~~~~eaK~~L~e~Id~fi~E~i~~A~~~Ia~~a~~~I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~E 487 (640)
. .+++|+.+++.+++|++| +..+++.|+++++++|++|++|||||+|++++++|+.|+++|++|+|||+|
T Consensus 73 ---~------~~~~k~~l~~~~~~~~~~-~~~~~~~Ia~~a~~~I~~g~~IlT~~~s~Tv~~~l~~a~~~~~~~~V~v~e 142 (276)
T 1vb5_A 73 ---P------VTNRRDILKSRALEFLRR-MEEAKRELASIGAQLIDDGDVIITHSFSSTVLEIIRTAKERKKRFKVILTE 142 (276)
T ss_dssp ---C------CCSCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCTTEEEECCSCCHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred ---C------HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHccCCCEEEEeCCChHHHHHHHHHHHcCCeEEEEEeC
Confidence 1 235688899999999987 578999999999999999999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEeccccc
Q 006577 488 SRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYK 567 (640)
Q Consensus 488 SRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~aetyK 567 (640)
|||++||+.++++|.+.||+|+||+|++++++|++||+||+|||+|++||+++||+|||++|++||+|+||||||||+||
T Consensus 143 trP~~qG~~~a~~L~~~gI~vtli~dsa~~~~m~~vd~vivGAd~i~~nG~v~nkiGt~~iA~~A~~~~vp~~V~a~~~K 222 (276)
T 1vb5_A 143 SSPDYEGLHLARELEFSGIEFEVITDAQMGLFCREASIAIVGADMITKDGYVVNKAGTYLLALACHENAIPFYVAAETYK 222 (276)
T ss_dssp CTTTTHHHHHHHHHHHTTCCEEEECGGGHHHHHTTCSEEEECCSEECTTSCEEEETTHHHHHHHHHHTTCCEEEECCGGG
T ss_pred CCcchhhHHHHHHHHHCCCCEEEEcHHHHHHHHccCCEEEEcccEEecCCCEeechhHHHHHHHHHHcCCCEEEeccccc
Confidence 99999998889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCcccccccCccCcccCCCCCcccCccccccccCCCCcc
Q 006577 568 FHERVQLDSICSNELGMHSKNMGTPNTSFRTHALWLLIQVSCLQVI 613 (640)
Q Consensus 568 f~~~~~~ds~i~nElrdP~Evl~~~g~~~~~~~~nPaFDVTP~eli 613 (640)
|++. ..+.++.||+|+|+| ....++||+||+||+++|
T Consensus 223 ~~~~-~~~~~i~iE~r~~~e--------~~v~v~np~fD~tP~~lI 259 (276)
T 1vb5_A 223 FHPT-LKSGDVMLMERDLIR--------GNVRIRNVLFDVTPWKYV 259 (276)
T ss_dssp BCSS-CCGGGCCCCBCCCEE--------TTEECCCBCEEEECGGGC
T ss_pred cCcc-cCccccccccCCccc--------cCccccCCCeEecCHHHC
Confidence 9999 888889999999998 234689999999999666
No 7
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens}
Probab=100.00 E-value=1.2e-57 Score=476.01 Aligned_cols=274 Identities=21% Similarity=0.281 Sum_probs=229.0
Q ss_pred HHHHHHHHHHHHHHccCCCCCccchHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHH
Q 006577 350 RCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIP-ISLSESEAKATLHSD 428 (640)
Q Consensus 350 raiaml~Alk~vI~dy~~p~~~t~srdL~~~L~~~i~~L~~aRPtsvsm~NAIr~lk~~I~~l~-~~~~~~eaK~~L~e~ 428 (640)
.+++.+.+|.++++...+ ++..+|.+.|+.++++|.++|| +++|+|+++++++.|.... ...+.+++|+.|++.
T Consensus 22 ~aiAAi~aL~~~l~~s~~----~T~~el~~~l~~a~~~L~~~r~-avsl~~a~~~~~~~i~~~~~~~~~~~~~k~~l~~~ 96 (315)
T 3ecs_A 22 SAVAAIRTLLEFLKRDKG----ETIQGLRANLTSAIETLCGVDS-SVAVSSGGELFLRFISLASLEYSDYSKCKKIMIER 96 (315)
T ss_dssp HHHHHHHHHHHHHTCCC--------CHHHHHHHHHHHTTTTTSC-CHHHHHHHHHHHHHCC-----------CTTHHHHH
T ss_pred HHHHHHHHHHHHHHhCCC----CCHHHHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHH
Confidence 457788889999886554 3567999999999999999997 8899999999998764321 223678999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCce
Q 006577 429 IERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSC 508 (640)
Q Consensus 429 Id~fi~E~i~~A~~~Ia~~a~~~I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~v 508 (640)
++.|++ ++..+++.|+++|.++|++|++|||||+|++|+++|+.|+++|++|+|||+||||++||.+|+++|.+.||+|
T Consensus 97 ~~~~~~-~~~~a~~~I~~~~~~~I~~g~~ILTh~~S~tv~~~l~~A~~~gk~~~V~v~EsrP~~qG~~la~~L~~~gI~v 175 (315)
T 3ecs_A 97 GELFLR-RISLSRNKIADLCHTFIKDGATILTHAYSRVVLRVLEAAVAAKKRFSVYVTESQPDLSGKKMAKALCHLNVPV 175 (315)
T ss_dssp HHHHHH-HHTTHHHHHHHHHGGGCCTTEEEEECSCCHHHHHHHHHHHTTTCCEEEEEECCTTTTHHHHHHHHHHTTTCCE
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHcCCCCEEEEcCCcHHHHHHHHHHHHcCCeEEEEEecCCCcchHHHHHHHHHHcCCCE
Confidence 999985 4788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEechHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEecccccccccccCCC-cccccccCccC
Q 006577 509 TYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDS-ICSNELGMHSK 587 (640)
Q Consensus 509 TlI~DsAv~~iM~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~aetyKf~~~~~~ds-~i~nElrdP~E 587 (640)
|||+|+|++|+|++||+||+|||+|++||+++||+|||++|++||+|+||||||||+|||++.++.+. .+.+|++++.|
T Consensus 176 tli~Dsa~~~~m~~vd~VivGAd~i~~nG~v~nkiGT~~iAl~Ak~~~vP~~V~a~~~K~~~~~~~~~~~i~~e~~~~~e 255 (315)
T 3ecs_A 176 TVVLDAAVGYIMEKADLVIVGAEGVVENGGIINKIGTNQMAVCAKAQNKPFYVVAESFKFVRLFPLNQQDVPDKFKYKAD 255 (315)
T ss_dssp EEECGGGHHHHGGGCSEEEEECSEECTTSCEEEETTHHHHHHHHHHTTCCEEEECCGGGBCSCCCSSGGGSCGGGTC---
T ss_pred EEEehhHHHHHHHhCCEEEECceEEecCCCeeehhhhHHHHHHHHHhCCCEEEEeccccccccCCCCcccCCccccChhh
Confidence 99999999999999999999999999999999999999999999999999999999999999988764 45799999999
Q ss_pred cccCCCCCcccCccccccccCCCCcc--------cccchhhhhccccccc
Q 006577 588 NMGTPNTSFRTHALWLLIQVSCLQVI--------LIPFQRFLGERTSITW 629 (640)
Q Consensus 588 vl~~~g~~~~~~~~nPaFDVTP~eli--------~iP~s~~~~~~~~~~~ 629 (640)
++.+.+......++||+|||||++|| +++|+++..||-++-+
T Consensus 256 v~~~~~~~~~v~v~NP~fDvTP~~lIt~iITe~Gv~~p~~vs~eLik~~~ 305 (315)
T 3ecs_A 256 TLKVAQTGQDLKEEHPWVDYTAPSLITLLFTDLGVLTPSAVSDELIKLYL 305 (315)
T ss_dssp ----------CCBCCCSEEEECGGGCSEEEETTEEECGGGHHHHHHHHHT
T ss_pred ccccccCCCcCcCCCCCccCCCHHHcCEEEcCCCCCCcchhhHHHHHHHH
Confidence 98765444456889999999999654 6689998888877544
No 8
>1w2w_B 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5
Probab=100.00 E-value=1.1e-41 Score=333.43 Aligned_cols=150 Identities=17% Similarity=0.220 Sum_probs=133.7
Q ss_pred CCeeEEEEcCCCCCchHHHH-HHHHHhCCCceEEEechHHHHHhhh----ccEEEEcceeEecCCCeecccchHHHHHHH
Q 006577 478 GKQFRVVIVDSRPKHEGKLL-LRRLVRKGLSCTYTHINAISYIIHE----VTRVFLGASSVLSNGTVCSRVGTACVAMVA 552 (640)
Q Consensus 478 Gk~f~ViV~ESRP~~eG~~L-a~eL~~~GI~vTlI~DsAv~~iM~~----VdkVlvGADaIlaNG~VvNKiGT~~lAlaA 552 (640)
||+|+|||+||||++||.+| +++|.+.||+||||+|+|++|+|++ ||+||||||+|++||+++||+|||++|++|
T Consensus 2 ~k~~~V~v~EsRP~~qG~rlta~eL~~~gI~vtlI~Dsa~~~~m~~~~~~Vd~VivGAd~v~~nG~v~nkiGT~~~Al~A 81 (191)
T 1w2w_B 2 PRMGHVFPLETRPYNQGSRLTAYELVYDKIPSTLITDSSIAYRIRTSPIPIKAAFVGADRIVRNGDTANKIGTLQLAVIC 81 (191)
T ss_dssp CEEEEEEEBCCTTTTHHHHTHHHHHHHHTCCBEEBCGGGHHHHHHHCSSCEEEEEECCSEECTTSCEEEETTHHHHHHHH
T ss_pred CcEEEEEEcCCCCccccHHHHHHHHHHcCCCEEEEechHHHHHHHhCCCCCCEEEECccEEecCCCEEecccHHHHHHHH
Confidence 68999999999999999875 7999999999999999999999998 999999999999999999999999999999
Q ss_pred hhCCCcEEEecccccccccccCCCcccccccCccCcccCCCC----------------------C---cccCcccccccc
Q 006577 553 YGFHIPVLVCCEAYKFHERVQLDSICSNELGMHSKNMGTPNT----------------------S---FRTHALWLLIQV 607 (640)
Q Consensus 553 k~~~VPVyV~aetyKf~~~~~~ds~i~nElrdP~Evl~~~g~----------------------~---~~~~~~nPaFDV 607 (640)
|+|+||||||||+|||+++++.+..+.||+|+|+|++.+.+. . ....++||+||+
T Consensus 82 k~~~vPf~V~a~~~k~~~~~~~g~~i~iE~r~~~ev~~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~v~Np~fDv 161 (191)
T 1w2w_B 82 KQFGIKFFVVAPKTTIDNVTETGDDIIVEERNPEEFKVVTGTVINPENGSLILNESGEPITGKVGIAPLEINVWNPAFDI 161 (191)
T ss_dssp HHHTCEEEEECCGGGBCSSCCSGGGCCCCBCCTHHHHEEEEEEBCTTTCCBCBCTTSCBCEEEEECSCTTCEECCBSEEE
T ss_pred HHcCCCEEEecccceeeeccCCcceeecccCCHHHhccccCccccccccccccccccccccccccccCCCcccccccccc
Confidence 999999999999999999999999999999999999876442 1 123679999999
Q ss_pred CCCCcc--------cccchhhhh-ccccc
Q 006577 608 SCLQVI--------LIPFQRFLG-ERTSI 627 (640)
Q Consensus 608 TP~eli--------~iP~s~~~~-~~~~~ 627 (640)
||++|| +++++.+-. ||.++
T Consensus 162 TP~~lIt~iITE~Gv~~ps~~~~~~l~~~ 190 (191)
T 1w2w_B 162 TPHELIDGIITEEGVFTKNSSGEFQLESL 190 (191)
T ss_dssp ECGGGCSEEEETTEEECCCTTSCCCCGGG
T ss_pred CCHHHcCEEEecCcccCCCCcchhhHHhh
Confidence 999655 556666555 66553
No 9
>1w2w_A 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5
Probab=99.92 E-value=2.6e-25 Score=220.66 Aligned_cols=171 Identities=12% Similarity=0.130 Sum_probs=147.2
Q ss_pred Ccceec--ccCCCceecccCcchhhhhhcccchhHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHH-H-ccC--CCCCc
Q 006577 298 NRVELF--RHLPQYEHGTQLPVLQSKFFQLDTLHPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAI-R-DYS--TPPAK 371 (640)
Q Consensus 298 ~~V~lf--~hLP~~~~~~~l~~~e~~~~ai~~mhPavv~Lgl~~~rGa~~Gsnaraiaml~Alk~vI-~-dy~--~p~~~ 371 (640)
..|.|| +.||++++|+.|++++++|.+|++|. + ||+|.++.++|++|++++++.- . +.. +-..-
T Consensus 16 ~~l~iLDQ~~LP~e~~~~~~~~~~~v~~AIk~M~---V-------RGAPaIgiaAA~glal~a~~~~~~~~~~~~~~~~~ 85 (211)
T 1w2w_A 16 VSVKVLDQLLLPYTTKYVPIHTIDDGYSVIKSMQ---V-------RGAPAIAIVGSLSVLTEVQLIKHNPTSDVATLYSL 85 (211)
T ss_dssp CEEEEECTTTTTTCCCEEECCSHHHHHHHHHTTS---S-------CSHHHHHHHHHHHHHHHHHHHHHCTTSTGGGGSCT
T ss_pred CEEEEEecCCCCCcEEEEEeCCHHHHHHHHHCCc---c-------cCchHHHHHHHHHHHHHHHhccccCChhhcccccc
Confidence 469999 99999999999999999999999999 8 9999999999999999998753 1 111 00000
Q ss_pred cchHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006577 372 TLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTK 451 (640)
Q Consensus 372 t~srdL~~~L~~~i~~L~~aRPtsvsm~NAIr~lk~~I~~l~~~~~~~eaK~~L~e~Id~fi~E~i~~A~~~Ia~~a~~~ 451 (640)
....+|..+|+..+++|.++|||+|||.|++++|+..+... .+.+++++.+++.++.|++|+ ..+++.|++||+++
T Consensus 86 ~~~~~~~~~l~~~~~~L~~sRPTAVNL~~Al~r~~~~~~~~---~~~~~~~~~l~~~a~~i~~ed-~~~n~~IG~~Ga~l 161 (211)
T 1w2w_A 86 VNWESTKTVLNKRLDFLLSSRPTAVNLSNSLVEIKNILKSS---SDLKAFDGSLYNYVCELIDED-LANNMKMGDNGAKY 161 (211)
T ss_dssp TCHHHHHHHHHHHHHHHHTSCCSCSHHHHHHHHHHHHHHTC---SSHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 11237889999999999999999999999999999988643 367889999999999999996 57999999999999
Q ss_pred c------c---CCCEEEeecCc--------HHHHHHHHHHHHcCCeeE
Q 006577 452 I------R---DGDVLLTYGSS--------SAVEMILQHAHELGKQFR 482 (640)
Q Consensus 452 I------~---dgdvILT~g~S--------stV~~vL~~A~e~Gk~f~ 482 (640)
| . +|++||||||| ++++++|+.||++|+.|+
T Consensus 162 I~~~~~~~~~~dg~~ILTHCNtG~LAT~g~GTALgvIr~a~~~Gk~~~ 209 (211)
T 1w2w_A 162 LIDVLQKDGFKDEFAVLTICNTGSLATSGYGTALGVIRSLWKDSLAKT 209 (211)
T ss_dssp HHHHHHHTTCCSEEEEEECSCCSGGGSSSSCSHHHHHHHHHHHHHHHH
T ss_pred HHHhcccccCCCCCeEEeECCCchHhhcCcchHHHHHHHHHHcCCccc
Confidence 9 8 89999999999 689999999999988653
No 10
>1uj6_A Ribose 5-phosphate isomerase; enzyme-inhibitor complex, riken structural genomics/proteomi initiative, RSGI, structural genomics; HET: A5P; 1.74A {Thermus thermophilus} SCOP: c.124.1.4 d.58.40.1 PDB: 1uj5_A* 1uj4_A*
Probab=98.11 E-value=1e-05 Score=81.09 Aligned_cols=127 Identities=13% Similarity=0.082 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHhccCCCEEEeecCcHHHHHHHHHHHHc----CCe-eEEEEcCCCCCchHHHHHHHHHhCCCceEEEech
Q 006577 440 ADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHEL----GKQ-FRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN 514 (640)
Q Consensus 440 A~~~Ia~~a~~~I~dgdvILT~g~SstV~~vL~~A~e~----Gk~-f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds 514 (640)
..+.|++.|+++|++|++|.. +.++++..+++...+. +.+ ++| |+. +...+..|.+.||++.++.+
T Consensus 8 ~K~~IA~~Aa~~I~dg~~I~L-gsGST~~~~~~~L~~~~~~~~l~~itv-VTn------S~~~a~~l~~~gi~v~~l~~- 78 (227)
T 1uj6_A 8 YKKEAAHAAIAYVQDGMVVGL-GTGSTARYAVLELARRLREGELKGVVG-VPT------SRATEELAKREGIPLVDLPP- 78 (227)
T ss_dssp HHHHHHHHHHTTCCTTCEEEE-CCSHHHHHHHHHHHHHHHTTSSCSCEE-EES------SHHHHHHHHHTTCCBCCCCT-
T ss_pred HHHHHHHHHHHHCCCCCEEEE-cCCHHHHHHHHHHhhhhhhcCCCCEEE-ECC------cHHHHHHHHhCCCeEEEcCC-
Confidence 456799999999999999986 5556666677666443 224 776 443 35567788888999887722
Q ss_pred HHHHHhhhccEEEEcceeEecCCCeecccchHHH--HHHHhhCCCcEEEecccccccccccCCCccccccc
Q 006577 515 AISYIIHEVTRVFLGASSVLSNGTVCSRVGTACV--AMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELG 583 (640)
Q Consensus 515 Av~~iM~~VdkVlvGADaIlaNG~VvNKiGT~~l--AlaAk~~~VPVyV~aetyKf~~~~~~ds~i~nElr 583 (640)
-++|++|+|||.|-.++......|.+.+ +++++. ...+||+++..||....- ...+++|.-
T Consensus 79 ------~~~D~af~Gadgvd~~~~~~~~~g~a~~kekiva~~-a~~~ivlaD~sK~~~~lg-~~~lPvEV~ 141 (227)
T 1uj6_A 79 ------EGVDLAIDGADEIAPGLALIKGMGGALLREKIVERV-AKEFIVIADHTKKVPVLG-RGPVPVEIV 141 (227)
T ss_dssp ------TCEEEEEECCSEEEGGGEEECCTTSCHHHHHHHHHT-EEEEEEEEEGGGBCSSSC-SSCEEEEEC
T ss_pred ------CcCCEEEECCCccCccccEECCHHHHHHHHHHHHhc-cCCEEEEEEcchhccccC-CCceeEEEC
Confidence 3799999999999999855555565655 455553 458999999999998632 234555543
No 11
>1m0s_A Ribose-5-phosphate isomerase A; D-ribose 5-phosphate isomerase, northeast structural genomics consortium, IR21, structural genomics, PSI; HET: CIT; 1.90A {Haemophilus influenzae} SCOP: c.124.1.4 d.58.40.1
Probab=97.81 E-value=4.3e-05 Score=76.24 Aligned_cols=129 Identities=14% Similarity=0.148 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHhccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHH
Q 006577 440 ADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYI 519 (640)
Q Consensus 440 A~~~Ia~~a~~~I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~i 519 (640)
..+.|++.|+++|++|++|. .+.++|+..+++...+.+.+++|.|+-| ...+..|.+.||++..+ . .
T Consensus 6 ~K~~IA~~Aa~~I~dg~~I~-LdsGST~~~la~~L~~~~~~itv~VTnS------~~~a~~l~~~gi~vi~l--~----~ 72 (219)
T 1m0s_A 6 MKKLAAQAALQYVKADRIVG-VGSGSTVNCFIEALGTIKDKIQGAVAAS------KESEELLRKQGIEVFNA--N----D 72 (219)
T ss_dssp HHHHHHHHHGGGCCTTSEEE-ECCSHHHHHHHHHHHTTGGGSCEEEESS------HHHHHHHHHTTCCBCCG--G----G
T ss_pred HHHHHHHHHHHhCCCCCEEE-EcChHHHHHHHHHHhccCCCEEEEECCh------HHHHHHHHhCCCeEEEe--C----c
Confidence 45679999999999999998 6888888888887754311577745533 34567777788887654 2 1
Q ss_pred hhhccEEEEcceeEecCCCeecccchHHHH--HHHhhCCCcEEEecccccccccccCCCcccccc
Q 006577 520 IHEVTRVFLGASSVLSNGTVCSRVGTACVA--MVAYGFHIPVLVCCEAYKFHERVQLDSICSNEL 582 (640)
Q Consensus 520 M~~VdkVlvGADaIlaNG~VvNKiGT~~lA--laAk~~~VPVyV~aetyKf~~~~~~ds~i~nEl 582 (640)
+.++|+.|+|||.|-.++++..-.|-..+- ++++ ...-+|++++..||....-....++.|.
T Consensus 73 ~~~~D~af~Gadgid~~~g~~~~~~~a~~kekiv~~-~A~~~ivlaD~SK~~~~lg~~~~lPvEV 136 (219)
T 1m0s_A 73 VSSLDIYVDGADEINPQKMMIKGGGAALTREKIVAA-LAKKFICIVDSSKQVDVLGSTFPLPVEV 136 (219)
T ss_dssp CSCEEEEEECCSEECTTSCEECCTTSCHHHHHHHHH-HEEEEEEEEEGGGBCSSTTSSSCEEEEE
T ss_pred cccCCEEEECcCeECCCCCeecCHHHHHHHHHHHHH-hcCcEEEEEeCcHHhhccCCCCCEEEEE
Confidence 248999999999999876665543333332 3332 3348999999999988643233455554
No 12
>2f8m_A Ribose 5-phosphate isomerase; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium; 2.09A {Plasmodium falciparum}
Probab=97.80 E-value=7.2e-05 Score=75.84 Aligned_cols=131 Identities=14% Similarity=0.117 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHH-hccCCCEEEeecCcHHHHHHHHHHHHc---C-C-eeEEEEcCCCCCchHHHHHHHHHhCCCceEEE
Q 006577 438 ILADRVIVKHAVT-KIRDGDVLLTYGSSSAVEMILQHAHEL---G-K-QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT 511 (640)
Q Consensus 438 ~~A~~~Ia~~a~~-~I~dgdvILT~g~SstV~~vL~~A~e~---G-k-~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI 511 (640)
..+.+.|++.|++ +|++|++|. .+.++|+..+++...+. + . +++| |+- +...+..|.+.||++..+
T Consensus 10 ~~~K~~iA~~Aa~~~I~dg~~Ig-LgsGST~~~~~~~L~~~~~~~~l~~itv-VTn------S~~~a~~l~~~gi~v~~l 81 (244)
T 2f8m_A 10 DSLKKIVAYKAVDEYVQSNMTIG-LGTGSTVFYVLERIDNLLKSGKLKDVVC-IPT------SIDTELKARKLGIPLTTL 81 (244)
T ss_dssp HHHHHHHHHHHHHHHCCTTCEEE-ECCSTTTHHHHHHHHHHHHHTSSCSCEE-EES------SHHHHHHHHHHTCCBCCC
T ss_pred HHHHHHHHHHHHHHhCCCCCEEE-EcChHHHHHHHHHHhhhhhccCCCCEEE-ECC------cHHHHHHHHHCCCeEEEe
Confidence 3467789999999 999999988 68888887777776533 2 2 5666 332 334567777779988776
Q ss_pred echHHHHHhhhccEEEEcceeEecCCCeecccchHHHHH-HHhhCCCcEEEeccccccc-ccccCCCcccccc
Q 006577 512 HINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAM-VAYGFHIPVLVCCEAYKFH-ERVQLDSICSNEL 582 (640)
Q Consensus 512 ~DsAv~~iM~~VdkVlvGADaIlaNG~VvNKiGT~~lAl-aAk~~~VPVyV~aetyKf~-~~~~~ds~i~nEl 582 (640)
- .+.++|+.|+|||.|-.+++++.--|-..+-- +.-....-|||+++..||. +..-....++.|.
T Consensus 82 ~------~~~~iD~afdGaDeId~~~glikg~g~Al~kekiva~~A~~~ivlaD~SK~~~~~Lg~~~plPvEV 148 (244)
T 2f8m_A 82 E------KHSNIDITIDGTDEIDLNLNLIKGRGGALVREKLVASSSSLLIIIGDESKLCTNGLGMTGAVPIEI 148 (244)
T ss_dssp C------SSCCBSEEEECCSEECTTCCEECCTTSCHHHHHHHHHTBSCEEEEEEGGGBCSSCTTCSSCEEEEE
T ss_pred c------ccCcCCEEEECCcccCCCCCcccCHHHHHHHHHHHHHhhCcEEEEEECCccccccCCCCCcEEEEE
Confidence 2 44489999999999999977766666555444 2445677899999999999 6543223455554
No 13
>1lk5_A D-ribose-5-phosphate isomerase; alpha/beta structure; 1.75A {Pyrococcus horikoshii} SCOP: c.124.1.4 d.58.40.1 PDB: 1lk7_A*
Probab=97.79 E-value=9.5e-05 Score=74.18 Aligned_cols=128 Identities=14% Similarity=0.104 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHhccCCCEEEeecCcHHHHHHHHHHHHc---C-C-eeEEEEcCCCCCchHHHHHHHHHhCCCceEEEech
Q 006577 440 ADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHEL---G-K-QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN 514 (640)
Q Consensus 440 A~~~Ia~~a~~~I~dgdvILT~g~SstV~~vL~~A~e~---G-k-~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds 514 (640)
..+.|++.|+++|++|++|. .+.++|+..+++...+. + . +++| |+- +...+..|.+.||++..+-
T Consensus 6 ~K~~IA~~Aa~~I~dg~~I~-LdsGST~~~~a~~L~~~~~~~~l~~itv-VTn------S~~~a~~l~~~gi~vi~l~-- 75 (229)
T 1lk5_A 6 MKKIAAKEALKFIEDDMVIG-LGTGSTTAYFIKLLGEKLKRGEISDIVG-VPT------SYQAKLLAIEHDIPIASLD-- 75 (229)
T ss_dssp HHHHHHHHHGGGCCTTCEEE-ECCSHHHHHHHHHHHHHHHTTSSCSCEE-EES------SHHHHHHHHHTTCCBCCGG--
T ss_pred HHHHHHHHHHHhCCCCCEEE-EcChHHHHHHHHHHhhhhhhccCCCEEE-ECC------cHHHHHHHHhCCCeEEEeC--
Confidence 45679999999999999988 68888888888777543 2 1 5666 332 3345677777888876542
Q ss_pred HHHHHhhhccEEEEcceeEecCCCeecccchHHHH--HHHhhCCCcEEEecccccccccccCCCcccccc
Q 006577 515 AISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVA--MVAYGFHIPVLVCCEAYKFHERVQLDSICSNEL 582 (640)
Q Consensus 515 Av~~iM~~VdkVlvGADaIlaNG~VvNKiGT~~lA--laAk~~~VPVyV~aetyKf~~~~~~ds~i~nEl 582 (640)
.+.++|+.|+|||.|-.++++..-.|-..+- +++ ....-+|++++..||....-....++.|.
T Consensus 76 ----~~~~~D~af~Gadgid~~~g~~~~~~~a~~kekiv~-~~A~~~ivlaD~SK~~~~lg~~~~lPvEV 140 (229)
T 1lk5_A 76 ----QVDAIDVAVDGADEVDPNLNLIKGRGAALTMEKIIE-YRAGTFIVLVDERKLVDYLCQKMPVPIEV 140 (229)
T ss_dssp ----GCSCEEEEEECCSEECTTCCEECCTTSCHHHHHHHH-HTEEEEEEEEEGGGBCSSTTSSCCEEEEE
T ss_pred ----CcccCCEEEECCCeECCCCCeecCHHHHHHHHHHHH-HhcCCeEEEEchhhhhhhcCCCCCEEEEE
Confidence 1248999999999999887665544444333 233 34458999999999988643233455554
No 14
>3kwm_A Ribose-5-phosphate isomerase A; structural genomics, IDP02119, center for structu genomics of infectious diseases, csgid; 2.32A {Francisella tularensis subsp}
Probab=97.63 E-value=0.00014 Score=72.81 Aligned_cols=129 Identities=14% Similarity=0.131 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHhccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHH
Q 006577 440 ADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYI 519 (640)
Q Consensus 440 A~~~Ia~~a~~~I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~i 519 (640)
..+.|++.|+++|++|++|.. +.++|+..+++...+..+++++.|+-| ...+..|.+.||++..+-+
T Consensus 12 ~K~~iA~~A~~~V~~g~~Igl-gsGST~~~~i~~L~~~~~~itv~VtnS------~~~a~~l~~~gi~l~~l~~------ 78 (224)
T 3kwm_A 12 LKKLAATEAAKSITTEITLGV-GTGSTVGFLIEELVNYRDKIKTVVSSS------EDSTRKLKALGFDVVDLNY------ 78 (224)
T ss_dssp HHHHHHHHHHTTCCSSEEEEE-CCSHHHHHHHHHGGGCTTTEEEEEESC------HHHHHHHHHTTCCBCCHHH------
T ss_pred HHHHHHHHHHHhCCCCCEEEE-CCcHHHHHHHHHHHhhcCceEEEECCc------HHHHHHHHHcCCeEEecCc------
Confidence 456789999999999987765 788888888887766545777756543 3456778888998765422
Q ss_pred hhhccEEEEcceeEecCCCeecccchHHHH-HHHhhCCCcEEEecccccccccccCCCcccccc
Q 006577 520 IHEVTRVFLGASSVLSNGTVCSRVGTACVA-MVAYGFHIPVLVCCEAYKFHERVQLDSICSNEL 582 (640)
Q Consensus 520 M~~VdkVlvGADaIlaNG~VvNKiGT~~lA-laAk~~~VPVyV~aetyKf~~~~~~ds~i~nEl 582 (640)
..++|+.|.|||.|-.++.++---|...+= =+......-|||+++..||.++.- ...++.|.
T Consensus 79 ~~~iD~afdGADevd~~~~liKGgg~al~rEKiva~~A~~~iviaD~sK~~~~Lg-~~plPvEV 141 (224)
T 3kwm_A 79 AGEIDLYIDGADECNNHKELIKGGGAALTREKICVAAAKKFICIIDESKKVNTLG-NFPLPIEV 141 (224)
T ss_dssp HCSEEEEEECCSEECTTSCEECCSSSCHHHHHHHHHTEEEEEEEEEGGGBCSSBC-SSCEEEEE
T ss_pred cccccEEEECCCccccccCeecCchhhHHHHHHHHHhcCcEEEEEeCchhhhhcC-CCCeEEEE
Confidence 258999999999999998876644443321 122234557899999999997643 22344443
No 15
>3l7o_A Ribose-5-phosphate isomerase A; RPIA; 1.70A {Streptococcus mutans}
Probab=97.37 E-value=0.00052 Score=68.84 Aligned_cols=127 Identities=15% Similarity=0.104 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHhccCCCEEEeecCcHHHHHHHHHHHHc----CCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechH
Q 006577 440 ADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHEL----GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA 515 (640)
Q Consensus 440 A~~~Ia~~a~~~I~dgdvILT~g~SstV~~vL~~A~e~----Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsA 515 (640)
..+.|++.|+++|++|++|.. +.++|+..+++...+. +.++++ |.-| ...+..|.+.||++..+.+
T Consensus 4 ~K~~iA~~A~~~V~dg~vIgL-GsGST~~~~i~~L~~~~~~~~~~i~~-VttS------~~t~~~l~~~Gi~l~~l~~-- 73 (225)
T 3l7o_A 4 LKKIAGVRAAQYVEDGMIVGL-GTGSTAYYFVEEVGRRVQEEGLQVIG-VTTS------SRTTAQAQALGIPLKSIDE-- 73 (225)
T ss_dssp HHHHHHHHHHTTCCTTCEEEE-CCSTTHHHHHHHHHHHHHHHCCCCEE-EESS------HHHHHHHHHHTCCBCCGGG--
T ss_pred HHHHHHHHHHHhCCCCCEEEE-CCcHHHHHHHHHHHHhhhhcCCCEEE-EcCC------HHHHHHHhccCceEEecCc--
Confidence 356789999999999997765 6777777777665543 556666 3322 3345677778998865432
Q ss_pred HHHHhhhccEEEEcceeEecCCCeecccchHHH--HHHHhhCCCcEEEecccccccccccCCCcccccc
Q 006577 516 ISYIIHEVTRVFLGASSVLSNGTVCSRVGTACV--AMVAYGFHIPVLVCCEAYKFHERVQLDSICSNEL 582 (640)
Q Consensus 516 v~~iM~~VdkVlvGADaIlaNG~VvNKiGT~~l--AlaAk~~~VPVyV~aetyKf~~~~~~ds~i~nEl 582 (640)
..++|+.|.|||-|-.+..++---|...+ -++| ....-|||+++..||.++.- ...++.|.
T Consensus 74 ----~~~iD~a~dGADevd~~~~liKGgG~al~rEKiva-~~A~~~iviaD~sK~~~~Lg-~~plPvEV 136 (225)
T 3l7o_A 74 ----VDSVDVTVDGADEVDPNFNGIKGGGGALLMEKIVG-TLTKDYIWVVDESKMVDTLG-AFRLPVEV 136 (225)
T ss_dssp ----SSCEEEEEECCSEECTTSCEECCTTSCHHHHHHHH-HTEEEEEEEEEGGGBCSSSC-SSCEEEEE
T ss_pred ----ccccCEEEEcCCccCcccCeecCchhhhHHHHHHH-HhCCeEEEEEecccchhhcC-CCCEEEEE
Confidence 34899999999999999888664444333 2222 33456899999999997642 22344554
No 16
>1o8b_A Ribose 5-phosphate isomerase; RPIA, PSI, protein ST initiative, MCSG, midwest center for structural genomics; HET: ABF; 1.25A {Escherichia coli} SCOP: c.124.1.4 d.58.40.1 PDB: 1lkz_A 1ks2_A* 3enq_A 3env_A* 3enw_A*
Probab=97.35 E-value=5.8e-05 Score=75.33 Aligned_cols=128 Identities=13% Similarity=0.130 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHhccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHH
Q 006577 440 ADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYI 519 (640)
Q Consensus 440 A~~~Ia~~a~~~I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~i 519 (640)
..+.|++.|+++|++|++|. .+.++|+..+++...+...+++|.|+-|-+- +..|.+.||++..+ +.
T Consensus 6 ~K~~IA~~Aa~lI~dg~~I~-LdsGST~~~la~~L~~~~~~itv~VTnS~~~------a~~l~~~gi~vi~l--~~---- 72 (219)
T 1o8b_A 6 LKKAVGWAALQYVQPGTIVG-VGTGSTAAHFIDALGTMKGQIEGAVSSSDAS------TEKLKSLGIHVFDL--NE---- 72 (219)
T ss_dssp -----------------CEE-ECCSCC---------------CCEEESCCC------------------CCG--GG----
T ss_pred HHHHHHHHHHHhCCCCCEEE-EcChHHHHHHHHHHhccCCCEEEEECCcHHH------HHHHHhCCCeEEEe--Cc----
Confidence 35678999999999999988 5777777777776644321566645655432 44555567766544 22
Q ss_pred hhhccEEEEcceeEecCCCeecccchHHHH--HHHhhCCCcEEEecccccccccccCCCcccccc
Q 006577 520 IHEVTRVFLGASSVLSNGTVCSRVGTACVA--MVAYGFHIPVLVCCEAYKFHERVQLDSICSNEL 582 (640)
Q Consensus 520 M~~VdkVlvGADaIlaNG~VvNKiGT~~lA--laAk~~~VPVyV~aetyKf~~~~~~ds~i~nEl 582 (640)
+.++|+.|+|||.|-.++.+..--|-..+- +++. ...-+|++++..||....- ...++.|.
T Consensus 73 ~~~~D~af~Gadgid~~~~~~~~~~~a~~kekiv~~-~A~~~ivlaD~SK~~~~lg-~~~lPvEV 135 (219)
T 1o8b_A 73 VDSLGIYVDGADEINGHMQMIKGGGAALTREKIIAS-VAEKFICIADASKQVDILG-KFPLPVEV 135 (219)
T ss_dssp CSCEEEEEECCSEECTTSCEECCCCC-HHHHHHHHH-HEEEEEEEEEGGGBCSSBT-SSCEEEEE
T ss_pred cCcCCEEEECcceECCCCCeecCHHHHHHHHHHHHH-hcCcEEEEEeCcccccccC-CCcEEEEE
Confidence 258999999999999887766433333333 3332 3337899999999987643 23455554
No 17
>3hhe_A Ribose-5-phosphate isomerase A; niaid, ssgcid, decode, SBRI, UW, STRU genomics, seattle structural genomics center for infectious; HET: 5RP; 2.30A {Bartonella henselae}
Probab=97.35 E-value=0.00072 Score=69.01 Aligned_cols=128 Identities=16% Similarity=0.112 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHhccCCCEEEeecCcHHHHHHHHHHHH---cCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHH
Q 006577 440 ADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHE---LGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAI 516 (640)
Q Consensus 440 A~~~Ia~~a~~~I~dgdvILT~g~SstV~~vL~~A~e---~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv 516 (640)
..+.|++.|+++|++|++|.. |..+|+..+++...+ .|.+++++ .- +...+..|.+.||++..+.+
T Consensus 27 ~K~~iA~~A~~~V~dg~vIgL-GsGST~~~~i~~L~~~~~~gl~ItvV-tt------S~~ta~~l~~~GI~l~~l~~--- 95 (255)
T 3hhe_A 27 LKKMAALKALEFVEDDMRLGI-GSGSTVNEFIPLLGERVANGLRVTCV-AT------SQYSEQLCHKFGVPISTLEK--- 95 (255)
T ss_dssp HHHHHHHHHHTTCCTTEEEEE-CCSHHHHHHHHHHHHHHHTTCCEEEE-ES------SHHHHHHHHHTTCCBCCTTT---
T ss_pred HHHHHHHHHHHhCCCCCEEEE-CCcHHHHHHHHHHHHhhccCCcEEEE-cC------CHHHHHHHHHcCCcEEeccc---
Confidence 356788899999999987665 777888777776644 24355533 32 23456778888999775532
Q ss_pred HHHhhhccEEEEcceeEecCCCeecccchHHHH-HHHhhCCCcEEEecccccccccccCCCcccccc
Q 006577 517 SYIIHEVTRVFLGASSVLSNGTVCSRVGTACVA-MVAYGFHIPVLVCCEAYKFHERVQLDSICSNEL 582 (640)
Q Consensus 517 ~~iM~~VdkVlvGADaIlaNG~VvNKiGT~~lA-laAk~~~VPVyV~aetyKf~~~~~~ds~i~nEl 582 (640)
+.++|+.|.|||-|-.+..++---|...+= =+......-|||+++..||.++.- ...++.|.
T Consensus 96 ---~~~iD~afdGADeVD~~~~lIKGgG~al~rEKiva~~A~~~ivIaD~SK~v~~LG-~~plPVEV 158 (255)
T 3hhe_A 96 ---IPELDLDIDGADEIGPEMTLIKGGGGALLHEKIVASASRAMFVIADETKMVKTLG-AFALPIEV 158 (255)
T ss_dssp ---CCSBSEEEECCSEECGGGCEECCTTSCHHHHHHHHHTBSCEEEEEEGGGBCSSSC-SSCEEEEE
T ss_pred ---ccccCEEEECCCccccccCeeeCchhhhHHHHHHHHhcCcEEEEEeCCCChhhhC-CCCeEEEE
Confidence 348999999999999987776533332211 122344567899999999998643 23355554
No 18
>1xtz_A Ribose-5-phosphate isomerase; yeast; 2.10A {Saccharomyces cerevisiae}
Probab=97.31 E-value=0.0005 Score=70.46 Aligned_cols=119 Identities=18% Similarity=0.181 Sum_probs=84.0
Q ss_pred HHHHHHHHHHH-hcc--CCCEEEeecCcHHHHHHHHHHHHc---CC------eeEEEEcCCCCCchHHHHHHHHHhCCCc
Q 006577 440 ADRVIVKHAVT-KIR--DGDVLLTYGSSSAVEMILQHAHEL---GK------QFRVVIVDSRPKHEGKLLLRRLVRKGLS 507 (640)
Q Consensus 440 A~~~Ia~~a~~-~I~--dgdvILT~g~SstV~~vL~~A~e~---Gk------~f~ViV~ESRP~~eG~~La~eL~~~GI~ 507 (640)
..+.|++.|++ +|+ +|++|. .+.++|+..+++...+. +. +++| |+- +...+..|.+.||+
T Consensus 21 ~K~~IA~~Aa~~~I~~~dg~~Ig-LgsGST~~~~a~~L~~~~~~~~l~~~~~~itv-VTn------S~~~a~~l~~~gi~ 92 (264)
T 1xtz_A 21 AKRAAAYRAVDENLKFDDHKIIG-IGSGSTVVYVAERIGQYLHDPKFYEVASKFIC-IPT------GFQSRNLILDNKLQ 92 (264)
T ss_dssp HHHHHHHHHHHHHCCTTTCCEEE-ECCCSSTHHHHHHHHHHHTSTTTHHHHTTCEE-EES------SHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHhccCCCCCCEEE-EcChHHHHHHHHHHhHhhhccccccccCCEEE-ECC------cHHHHHHHHHCCCe
Confidence 45679999998 999 999987 67777777777776543 22 3665 332 33456777788887
Q ss_pred eEEEechHHHHHhhhccEEEEcceeEecCCCeecccchHHHHH-HHhhCCCcEEEeccccccc-ccc
Q 006577 508 CTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAM-VAYGFHIPVLVCCEAYKFH-ERV 572 (640)
Q Consensus 508 vTlI~DsAv~~iM~~VdkVlvGADaIlaNG~VvNKiGT~~lAl-aAk~~~VPVyV~aetyKf~-~~~ 572 (640)
+..+ . .+.++|+.|+|||.|-.++.++.--|-..+-- +......-|||+++..||. +..
T Consensus 93 v~~l--~----~~~~iD~afdGADgId~~~~likg~g~A~~kekiva~~A~~~IvlaD~SK~~~~~L 153 (264)
T 1xtz_A 93 LGSI--E----QYPRIDIAFDGADEVDENLQLIKGGGACLFQEKLVSTSAKTFIVVADSRKKSPKHL 153 (264)
T ss_dssp ECCT--T----TCCSEEEEEECCSEECTTSCEECCTTSCHHHHHHHHTTEEEEEEEEEGGGBCSSSB
T ss_pred EEEe--h----hcCcCCEEEECCcccCCCCCeecCHHHHHHHHHHHHHhhCcEEEEEEccccccccc
Confidence 7655 2 22589999999999998876665555444433 2334566899999999999 543
No 19
>2pjm_A Ribose-5-phosphate isomerase A; 3D-structure, structural genomics, pentose phosphate pathway, carbon fixation, NPPSFA; 1.78A {Methanocaldococcus jannaschii} PDB: 3ixq_A*
Probab=97.24 E-value=0.002 Score=64.65 Aligned_cols=128 Identities=13% Similarity=0.050 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHhccCCCEEEeecCcHHHHHHHHHHHHc----CCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechH
Q 006577 440 ADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHEL----GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA 515 (640)
Q Consensus 440 A~~~Ia~~a~~~I~dgdvILT~g~SstV~~vL~~A~e~----Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsA 515 (640)
..+.|++.|+++|++|++|.. +.++|+..+++...+. +.+++++ +- +...+..|.+.||++.-+. .
T Consensus 6 ~K~~iA~~A~~~I~~g~~Igl-gsGST~~~~~~~L~~~~~~~~l~itvV-tn------S~~~a~~l~~~gi~v~~l~--~ 75 (226)
T 2pjm_A 6 LKLKVAKEAVKLVKDGMVIGL-GTGSTAALFIRELGNRIREEELTVFGI-PT------SFEAKMLAMQYEIPLVTLD--E 75 (226)
T ss_dssp HHHHHHHHHGGGCCTTCEEEE-CCSHHHHHHHHHHHHHHHHHTCCCEEE-ES------SHHHHHHHHHTTCCBCCTT--T
T ss_pred HHHHHHHHHHHHCCCCCEEEE-CCCHHHHHHHHHHHhhhhccCCcEEEE-eC------cHHHHHHHHhcCCeEEeec--c
Confidence 456799999999999998776 7777777777665442 3456643 32 2345567888999876322 1
Q ss_pred HHHHhhhccEEEEcceeEecC-CCeecccchHHH-HHHHhhCCCcEEEecccccccccccCCCcccccc
Q 006577 516 ISYIIHEVTRVFLGASSVLSN-GTVCSRVGTACV-AMVAYGFHIPVLVCCEAYKFHERVQLDSICSNEL 582 (640)
Q Consensus 516 v~~iM~~VdkVlvGADaIlaN-G~VvNKiGT~~l-AlaAk~~~VPVyV~aetyKf~~~~~~ds~i~nEl 582 (640)
+. +|+.|.|||.|-.+ +.++---|...+ --+-.....-|||+++..||.++.-....++.|.
T Consensus 76 ----~~-iD~afdGaDevd~~t~~likGgg~al~rEKiva~~A~~~IviaD~sK~~~~Lg~~~~lPvEV 139 (226)
T 2pjm_A 76 ----YD-VDIAFDGADEVEETTLFLIKGGGGCHTQEKIVDYNANEFVVLVDESKLVKKLGEKFPIPVEV 139 (226)
T ss_dssp ----CC-CSEEEECCSEEETTTCCEECCTTSCHHHHHHHHHHSSEEEEEEEGGGEESSTTSSSCEEEEE
T ss_pred ----cc-CCEEEEcCceeccccCceeeccchhhHHHHHHHHHhCcEEEEEecchhhhccCCCCCEEEEE
Confidence 33 99999999999999 776554443222 1111223456899999999998653223455554
No 20
>3uw1_A Ribose-5-phosphate isomerase A; ssgcid, seattle structural genomics center for infectious DI isomerase, ribose isomerase; HET: R5P; 1.71A {Burkholderia thailandensis} PDB: 3u7j_A*
Probab=96.65 E-value=0.0038 Score=63.17 Aligned_cols=115 Identities=19% Similarity=0.231 Sum_probs=80.7
Q ss_pred HHHHHHHHHHhccC----CCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHH
Q 006577 441 DRVIVKHAVTKIRD----GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAI 516 (640)
Q Consensus 441 ~~~Ia~~a~~~I~d----gdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv 516 (640)
.+.+++.|+++|++ |++|.. |..+|+..++....+..++++.+|.- +...+..|.+.||++..+.+
T Consensus 15 K~~aA~~A~~~V~d~~~~g~vIGL-GtGST~~~~i~~L~~~~~~i~~~V~t------S~~t~~~~~~~Gi~l~~l~~--- 84 (239)
T 3uw1_A 15 KRLVGEAAARYVTDNVPQGAVIGV-GTGSTANCFIDALAAVKDRYRGAVSS------SVATTERLKSHGIRVFDLNE--- 84 (239)
T ss_dssp HHHHHHHHHHHHHHHSCTTCEEEE-CCSHHHHHHHHHHHTTGGGSCEEEES------SHHHHHHHHHTTCCBCCGGG---
T ss_pred HHHHHHHHHHHhhccCcCCCEEEE-CccHHHHHHHHHHHhhhccceEEeCC------cHHHHHHHHHcCCcEEeccc---
Confidence 45677777888877 887665 88888888888876644456544443 34556788889998865332
Q ss_pred HHHhhhccEEEEcceeEecCCCeecccchH-----HHHHHHhhCCCcEEEecccccccccc
Q 006577 517 SYIIHEVTRVFLGASSVLSNGTVCSRVGTA-----CVAMVAYGFHIPVLVCCEAYKFHERV 572 (640)
Q Consensus 517 ~~iM~~VdkVlvGADaIlaNG~VvNKiGT~-----~lAlaAk~~~VPVyV~aetyKf~~~~ 572 (640)
..++|+.|.|||-|-.++.++--=|.. .+|-. ..-|||+++..||.++.
T Consensus 85 ---~~~iD~a~DGADeVd~~l~lIKGgGgal~rEKiva~~----A~~~ivIaD~sK~v~~L 138 (239)
T 3uw1_A 85 ---IESLQVYVDGADEIDESGAMIKGGGGALTREKIVASV----AETFVCIADASKRVAML 138 (239)
T ss_dssp ---CSCEEEEEECCSEECTTCCEECCSSSCHHHHHHHHHH----EEEEEEEEEGGGBCSSB
T ss_pred ---ccccCEEEECCcccCcccCEecCchHHHHHHHHHHHh----CCcEEEEEecchhhhhc
Confidence 258999999999999988776633322 23333 34679999999998764
No 21
>4gmk_A Ribose-5-phosphate isomerase A; D-ribose-5-phosphate isomerase family, ribose 5-phosphate isomerisation; 1.72A {Lactobacillus salivarius}
Probab=90.76 E-value=2.1 Score=42.99 Aligned_cols=115 Identities=17% Similarity=0.183 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHhccCCCEEEeecCcHHHHHHHHHHHH----cCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechH
Q 006577 440 ADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHE----LGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA 515 (640)
Q Consensus 440 A~~~Ia~~a~~~I~dgdvILT~g~SstV~~vL~~A~e----~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsA 515 (640)
..+..++.|+++|++|. |+=.|..||+..++....+ .+.. +.++-| ..+.+..+.+.||++.-+.+
T Consensus 7 ~K~~aa~~A~~~V~~gm-vvGlGTGSTv~~~i~~L~~~~~~~~l~--i~~V~t-----S~~t~~~a~~~Gi~l~~l~~-- 76 (228)
T 4gmk_A 7 LKQLVGTKAVEWIKDGM-IVGLGTGSTVKYMVDALGKRVNEEGLD--IVGVTT-----SIRTAEQAKSLGIVIKDIDE-- 76 (228)
T ss_dssp HHHHHHHHHGGGCCTTC-EEEECCSHHHHHHHHHHHHHHHHHCCC--CEEEES-----SHHHHHHHHHTTCCBCCGGG--
T ss_pred HHHHHHHHHHHhCCCCC-EEEECchHHHHHHHHHHHHHHhhcCCc--EEEEeC-----cHHHHHHHHHcCCceeChHH--
Confidence 45567788899999987 5566888888888876643 3433 333322 22345677778999876554
Q ss_pred HHHHhhhccEEEEcceeEecCCCeecccchH-----HHHHHHhhCCCcEEEecccccccccc
Q 006577 516 ISYIIHEVTRVFLGASSVLSNGTVCSRVGTA-----CVAMVAYGFHIPVLVCCEAYKFHERV 572 (640)
Q Consensus 516 v~~iM~~VdkVlvGADaIlaNG~VvNKiGT~-----~lAlaAk~~~VPVyV~aetyKf~~~~ 572 (640)
..++|..|=|||-|-.|..++--=|.+ .+|.+|++ |+|+++..|+.+..
T Consensus 77 ----~~~iD~~iDGADEvd~~l~lIKGGGgal~rEKivA~~a~~----fI~IaD~sK~v~~L 130 (228)
T 4gmk_A 77 ----VDHIDLTIDGADEISSDFQGIKGGGAALLYEKIVATKSNK----NMWIVDESKMVDDL 130 (228)
T ss_dssp ----SSCEEEEEECCSEECTTSCEECCTTSCHHHHHHHHHHEEE----EEEEEEGGGBCSSS
T ss_pred ----CCccceEeccHHHhhhchhhhhcchHHHHHHHHHHHhhhh----eEEEeccccccCcc
Confidence 247999999999999998877555533 34555554 79999999998764
No 22
>3ixq_A Ribose-5-phosphate isomerase A; structural genomics, pentose phosphate pathway, carbon fixation, NPPSFA; HET: PGO; 1.78A {Methanocaldococcus jannaschii}
Probab=87.14 E-value=1.5 Score=43.87 Aligned_cols=128 Identities=15% Similarity=0.116 Sum_probs=77.5
Q ss_pred HHHHHHHHHHhccCCCEEEeecCcHHHHHHHHHHHHcC--CeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHH
Q 006577 441 DRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELG--KQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISY 518 (640)
Q Consensus 441 ~~~Ia~~a~~~I~dgdvILT~g~SstV~~vL~~A~e~G--k~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~ 518 (640)
.+..++.|+++|++|.+ +=.|..+||..++....++. ....|+++.|. .+....+.+.||+++.+.+ +
T Consensus 7 K~~aa~~A~~~V~~gmv-vGlGTGSTv~~~I~~L~~~~~~~~l~i~~v~tS-----~~t~~~a~~~gi~l~~l~~--~-- 76 (226)
T 3ixq_A 7 KLKVAKEAVKLVKDGMV-IGLGTGSTAALFIRELGNRIREEELTVFGIPTS-----FEAKMLAMQYEIPLVTLDE--Y-- 76 (226)
T ss_dssp HHHHHHHHGGGCCTTCE-EEECCSHHHHHHHHHHHHHHHHHTCCCEEEESS-----HHHHHHHHHTTCCBCCTTT--C--
T ss_pred HHHHHHHHHHhCCCCCE-EEeCcHHHHHHHHHHHHHhhhhcCCeeEeeccc-----HHHHHHHHhcCCCcccccc--c--
Confidence 45677888999999874 56788899888887765421 12335544432 2233556668998765533 1
Q ss_pred HhhhccEEEEcceeEecCC-CeecccchHHHH--HHHhhCCCcEEEecccccccccccCCCcccccc
Q 006577 519 IIHEVTRVFLGASSVLSNG-TVCSRVGTACVA--MVAYGFHIPVLVCCEAYKFHERVQLDSICSNEL 582 (640)
Q Consensus 519 iM~~VdkVlvGADaIlaNG-~VvNKiGT~~lA--laAk~~~VPVyV~aetyKf~~~~~~ds~i~nEl 582 (640)
.+|..|=|||-|-..+ .++--=|...+= ++| ....-|+|+++..|+.+..-....++.|.
T Consensus 77 ---~iDl~iDGADEvd~~~l~lIKGGGgAl~rEKivA-~~a~~~I~I~D~sK~v~~LG~~fplPVEV 139 (226)
T 3ixq_A 77 ---DVDIAFDGADEVEETTLFLIKGGGGCHTQEKIVD-YNANEFVVLVDESKLVKKLGEKFPIPVEV 139 (226)
T ss_dssp ---CCSEEEECCSEEETTTCCEECCTTSCHHHHHHHH-HHSSEEEEEEEGGGEESSTTSSSCEEEEE
T ss_pred ---cccEEEeCcchhccccceEEecchHHHHHHHHHH-HHhhheEEEeccccchhhcCCCCCccEEE
Confidence 3899999999996433 333322322211 122 23456788999999987542223344553
No 23
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=80.96 E-value=15 Score=30.26 Aligned_cols=98 Identities=15% Similarity=0.071 Sum_probs=62.4
Q ss_pred CCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEec---hHHHHHhhhccEEEEcce
Q 006577 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI---NAISYIIHEVTRVFLGAS 531 (640)
Q Consensus 455 gdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D---sAv~~iM~~VdkVlvGAD 531 (640)
+.+|+..|....=..++..+.+.| .++|++++-.+. -+..+...|+....... ..+..++.++|.||..+
T Consensus 5 ~~~v~I~G~G~iG~~~~~~l~~~g-~~~v~~~~r~~~-----~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~- 77 (118)
T 3ic5_A 5 RWNICVVGAGKIGQMIAALLKTSS-NYSVTVADHDLA-----ALAVLNRMGVATKQVDAKDEAGLAKALGGFDAVISAA- 77 (118)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCS-SEEEEEEESCHH-----HHHHHHTTTCEEEECCTTCHHHHHHHTTTCSEEEECS-
T ss_pred cCeEEEECCCHHHHHHHHHHHhCC-CceEEEEeCCHH-----HHHHHHhCCCcEEEecCCCHHHHHHHHcCCCEEEECC-
Confidence 457888888444445556666665 367887775432 12344466765543221 34556677888888766
Q ss_pred eEecCCCeecccchHHHHHHHhhCCCcEEEecccccc
Q 006577 532 SVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKF 568 (640)
Q Consensus 532 aIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~aetyKf 568 (640)
| -..+..++..|...+++++.++....+
T Consensus 78 -----~----~~~~~~~~~~~~~~g~~~~~~~~~~~~ 105 (118)
T 3ic5_A 78 -----P----FFLTPIIAKAAKAAGAHYFDLTEDVAA 105 (118)
T ss_dssp -----C----GGGHHHHHHHHHHTTCEEECCCSCHHH
T ss_pred -----C----chhhHHHHHHHHHhCCCEEEecCcHHH
Confidence 1 123678888999999999987765543
No 24
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Probab=80.30 E-value=5.4 Score=40.18 Aligned_cols=100 Identities=14% Similarity=0.104 Sum_probs=65.0
Q ss_pred CCEEEeecCcHHHHH-HHHHHHHcCCeeEEEEcCCCC--CchHHHHHHHHHhCCCceEEEe--c-hHHHHHhh--hccEE
Q 006577 455 GDVLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRP--KHEGKLLLRRLVRKGLSCTYTH--I-NAISYIIH--EVTRV 526 (640)
Q Consensus 455 gdvILT~g~SstV~~-vL~~A~e~Gk~f~ViV~ESRP--~~eG~~La~eL~~~GI~vTlI~--D-sAv~~iM~--~VdkV 526 (640)
+.+||..|-++.+-. +++.+.+.| .+|+++.-.+ ..+-......|...|+.+...- | ..+..++. ++|.|
T Consensus 10 ~~~IlVtGatG~iG~~l~~~L~~~g--~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~V 87 (346)
T 3i6i_A 10 KGRVLIAGATGFIGQFVATASLDAH--RPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEHEIDIV 87 (346)
T ss_dssp -CCEEEECTTSHHHHHHHHHHHHTT--CCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHHTTCCEE
T ss_pred CCeEEEECCCcHHHHHHHHHHHHCC--CCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhhCCCCEE
Confidence 357899998877654 445555666 5566665444 2233334467777887665433 2 34566666 55555
Q ss_pred EEcceeEecCCCeecccchHHHHHHHhhCC-CcEEEec
Q 006577 527 FLGASSVLSNGTVCSRVGTACVAMVAYGFH-IPVLVCC 563 (640)
Q Consensus 527 lvGADaIlaNG~VvNKiGT~~lAlaAk~~~-VPVyV~a 563 (640)
| .+.+..|-.|+..+.-+|+..+ ++.+|.+
T Consensus 88 i-------~~a~~~n~~~~~~l~~aa~~~g~v~~~v~S 118 (346)
T 3i6i_A 88 V-------STVGGESILDQIALVKAMKAVGTIKRFLPS 118 (346)
T ss_dssp E-------ECCCGGGGGGHHHHHHHHHHHCCCSEEECS
T ss_pred E-------ECCchhhHHHHHHHHHHHHHcCCceEEeec
Confidence 4 4445568999999999999999 9998864
No 25
>3rrl_A Succinyl-COA:3-ketoacid-coenzyme A transferase SU; MCSG,PSI-biology, structural genomics, midwest center for ST genomics; 2.29A {Helicobacter pylori}
Probab=79.88 E-value=6.7 Score=39.23 Aligned_cols=98 Identities=18% Similarity=0.218 Sum_probs=57.8
Q ss_pred HHHHHhccCCCEEEeecCc--HHHHHHHHHHHHcC-CeeEEEEcCCC---------------------CCchHHHHHHHH
Q 006577 446 KHAVTKIRDGDVLLTYGSS--SAVEMILQHAHELG-KQFRVVIVDSR---------------------PKHEGKLLLRRL 501 (640)
Q Consensus 446 ~~a~~~I~dgdvILT~g~S--stV~~vL~~A~e~G-k~f~ViV~ESR---------------------P~~eG~~La~eL 501 (640)
+.|+.+|+||++|++.|+. +.-..++....+++ ++++++-...- +......|.+..
T Consensus 12 ~eAv~~IkdG~tV~~gGf~~~g~P~~li~aL~~~~~kdLtli~~~~g~~~~g~~~L~~~G~v~r~i~s~~g~~~~~~~~~ 91 (235)
T 3rrl_A 12 DKALSALKDGDTILVGGFGLCGIPEYAIDYIYKKGIKDLIVVSNNCGVDDFGLGILLEKKQIKKIIASYVGENKIFESQM 91 (235)
T ss_dssp HHHHTTCCTTCEEEECCBTTBTCCHHHHHHHHHHTCCSEEEECSCCCCSSSGGGGGGTTTCEEEEEESCCCSCHHHHHHH
T ss_pred HHHHhhCCCCCEEEECCcCccCCHHHHHHHHHhcCCCcEEEEEcCCCCCCcCHHHHHhCCCeeEEEeccccCCHHHHHHH
Confidence 3467789999999998853 33344555544444 56777755221 122223333333
Q ss_pred HhCCCceEEEechHHHHHhh---------------------------------------hccEEEEcceeEecCCCeecc
Q 006577 502 VRKGLSCTYTHINAISYIIH---------------------------------------EVTRVFLGASSVLSNGTVCSR 542 (640)
Q Consensus 502 ~~~GI~vTlI~DsAv~~iM~---------------------------------------~VdkVlvGADaIlaNG~VvNK 542 (640)
.+-.|.+..++-..++..++ ++|..|+.|..+-.+|.+.-.
T Consensus 92 ~~G~ie~~~~pqg~la~~~rag~~G~P~~~t~~glgT~v~~gk~~~~~~G~~~l~~~a~~~DvAli~a~~aD~~GN~~~~ 171 (235)
T 3rrl_A 92 LNGEIEVVLTPQGTLAENLHAGGAGIPAYYTPTGVGTLIAQGKESREFNGKEYILERAITGDYGLIKAYKSDTLGNLVFR 171 (235)
T ss_dssp HHTSSEEEECCHHHHHHHHHHHHHTCCEEEESTTTTSGGGTTCCEEEETTEEEEEEECCCEEEEEEECSEEETTCCEECC
T ss_pred HcCCeEEEECCHHHHHHHHHHHhCCCCEEEeccccCcccccCceEEeeCCEEEEEEcCCCCeEEEEEeeecCCCceEEEe
Confidence 33334444444333332222 679999999999999998765
Q ss_pred c
Q 006577 543 V 543 (640)
Q Consensus 543 i 543 (640)
.
T Consensus 172 ~ 172 (235)
T 3rrl_A 172 K 172 (235)
T ss_dssp G
T ss_pred c
Confidence 4
No 26
>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*
Probab=79.23 E-value=6.9 Score=38.71 Aligned_cols=113 Identities=12% Similarity=0.073 Sum_probs=70.8
Q ss_pred HHHHHHHhccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCC------------------chHHHHHHHHHhC-
Q 006577 444 IVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPK------------------HEGKLLLRRLVRK- 504 (640)
Q Consensus 444 Ia~~a~~~I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~------------------~eG~~La~eL~~~- 504 (640)
++..+...+. +..||..|..+.-..++..+...|.. ++.++|.... ..-..++..|.+.
T Consensus 21 ~g~~~q~~l~-~~~VlVvG~Gg~G~~va~~La~~Gv~-~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~n 98 (249)
T 1jw9_B 21 FDFDGQEALK-DSRVLIVGLGGLGCAASQYLASAGVG-NLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRIN 98 (249)
T ss_dssp THHHHHHHHH-HCEEEEECCSHHHHHHHHHHHHHTCS-EEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHC
T ss_pred cCHHHHHHHh-CCeEEEEeeCHHHHHHHHHHHHcCCC-eEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHC
Confidence 4444555554 46899999988777777777777753 4555554441 1223445667664
Q ss_pred -CCceEEEe----chHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEecccccc
Q 006577 505 -GLSCTYTH----INAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKF 568 (640)
Q Consensus 505 -GI~vTlI~----DsAv~~iM~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~aetyKf 568 (640)
++.++.+. +..+..++.++|.||.+.|..- --+.+.-.|+.+++|++.+ ....|
T Consensus 99 p~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~d~~~---------~~~~l~~~~~~~~~p~i~~-~~~g~ 157 (249)
T 1jw9_B 99 PHIAITPVNALLDDAELAALIAEHDLVLDCTDNVA---------VRNQLNAGCFAAKVPLVSG-AAIRM 157 (249)
T ss_dssp TTSEEEEECSCCCHHHHHHHHHTSSEEEECCSSHH---------HHHHHHHHHHHHTCCEEEE-EEEBT
T ss_pred CCcEEEEEeccCCHhHHHHHHhCCCEEEEeCCCHH---------HHHHHHHHHHHcCCCEEEe-eeccc
Confidence 45555533 3345566789999998876542 2356777888899999875 33344
No 27
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=78.15 E-value=15 Score=37.54 Aligned_cols=104 Identities=9% Similarity=0.056 Sum_probs=58.2
Q ss_pred cCCCEEEeecCcHHHHHHHHHHH--HcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEech---------HHHHHh-
Q 006577 453 RDGDVLLTYGSSSAVEMILQHAH--ELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN---------AISYII- 520 (640)
Q Consensus 453 ~dgdvILT~g~SstV~~vL~~A~--e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds---------Av~~iM- 520 (640)
....+++|-|.+..+..++..+. +.|...+|++. .|.+.+...+ +...|+.+..+.-. .+-..+
T Consensus 104 ~~~~i~~t~g~t~al~~~~~~l~~~~~gd~~~Vl~~--~p~~~~~~~~--~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~ 179 (437)
T 3g0t_A 104 PARACVPTVGSMQGCFVSFLVANRTHKNREYGTLFI--DPGFNLNKLQ--CRILGQKFESFDLFEYRGEKLREKLESYLQ 179 (437)
T ss_dssp CGGGEEEESHHHHHHHHHHHHHTTSCTTCSCCEEEE--ESCCHHHHHH--HHHHTCCCEEEEGGGGCTTHHHHHHHHHHT
T ss_pred CcccEEEeCCHHHHHHHHHHHHhcCCCCCccEEEEe--CCCcHhHHHH--HHHcCCEEEEEeecCCCCccCHHHHHHHHh
Confidence 34567888776666666666654 44542255555 5666664433 33468877777532 222333
Q ss_pred -hhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 521 -HEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 521 -~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
.++..|++ +.---..|.++..---..|+-+|++|++.+++
T Consensus 180 ~~~~~~v~l-~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~ 220 (437)
T 3g0t_A 180 TGQFCSIIY-SNPNNPTWQCMTDEELRIIGELATKHDVIVIE 220 (437)
T ss_dssp TTCCCEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred cCCceEEEE-eCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEE
Confidence 24556655 22222334443333334467789999998887
No 28
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=76.68 E-value=5.2 Score=37.90 Aligned_cols=106 Identities=17% Similarity=0.123 Sum_probs=61.1
Q ss_pred CCCEEEeecCcHHHHH-HHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEech--HHHHHhhhccEEEEcc
Q 006577 454 DGDVLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN--AISYIIHEVTRVFLGA 530 (640)
Q Consensus 454 dgdvILT~g~SstV~~-vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds--Av~~iM~~VdkVlvGA 530 (640)
.|.+||..|-|+.+=. +.+.+.++| .+|+++.-++.. ..+|...++...+..|- .+...+..+|.||--|
T Consensus 20 ~~~~ilVtGatG~iG~~l~~~L~~~G--~~V~~~~R~~~~-----~~~~~~~~~~~~~~~Dl~~~~~~~~~~~D~vi~~a 92 (236)
T 3e8x_A 20 QGMRVLVVGANGKVARYLLSELKNKG--HEPVAMVRNEEQ-----GPELRERGASDIVVANLEEDFSHAFASIDAVVFAA 92 (236)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESSGGG-----HHHHHHTTCSEEEECCTTSCCGGGGTTCSEEEECC
T ss_pred CCCeEEEECCCChHHHHHHHHHHhCC--CeEEEEECChHH-----HHHHHhCCCceEEEcccHHHHHHHHcCCCEEEECC
Confidence 3678999998876644 455566666 567776544332 23455566622233443 3333444566665544
Q ss_pred eeEecCC----CeecccchHHHHHHHhhCCCcEEEecccc
Q 006577 531 SSVLSNG----TVCSRVGTACVAMVAYGFHIPVLVCCEAY 566 (640)
Q Consensus 531 DaIlaNG----~VvNKiGT~~lAlaAk~~~VPVyV~aety 566 (640)
-....+. --+|-.|+..+.-+|+..++.-+|...+|
T Consensus 93 g~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~ 132 (236)
T 3e8x_A 93 GSGPHTGADKTILIDLWGAIKTIQEAEKRGIKRFIMVSSV 132 (236)
T ss_dssp CCCTTSCHHHHHHTTTHHHHHHHHHHHHHTCCEEEEECCT
T ss_pred CCCCCCCccccchhhHHHHHHHHHHHHHcCCCEEEEEecC
Confidence 2111000 01277899999999999898877765554
No 29
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=76.09 E-value=18 Score=32.97 Aligned_cols=84 Identities=7% Similarity=0.041 Sum_probs=49.5
Q ss_pred HHHHHhccCCCEEEeecCcHH--HHHHH-HHHHHcCCeeEE----------------EEcCCCCCchHHHHHHHHHhCCC
Q 006577 446 KHAVTKIRDGDVLLTYGSSSA--VEMIL-QHAHELGKQFRV----------------VIVDSRPKHEGKLLLRRLVRKGL 506 (640)
Q Consensus 446 ~~a~~~I~dgdvILT~g~Sst--V~~vL-~~A~e~Gk~f~V----------------iV~ESRP~~eG~~La~eL~~~GI 506 (640)
+.+++.|.+...|..+|..+. +-..+ .....-|+...+ ++.-|+-..+-.++++.+.+.|+
T Consensus 31 ~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vi~iS~sG~t~~~~~~~~~ak~~g~ 110 (180)
T 1jeo_A 31 DSLIDRIIKAKKIFIFGVGRSGYIGRCFAMRLMHLGFKSYFVGETTTPSYEKDDLLILISGSGRTESVLTVAKKAKNINN 110 (180)
T ss_dssp HHHHHHHHHCSSEEEECCHHHHHHHHHHHHHHHHTTCCEEETTSTTCCCCCTTCEEEEEESSSCCHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHhCCEEEEEeecHHHHHHHHHHHHHHHcCCeEEEeCCCccccCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCC
Confidence 344555666678888877543 32222 222233432221 11112222234556688889999
Q ss_pred ceEEEechHHHHHhhhccEEEEcc
Q 006577 507 SCTYTHINAISYIIHEVTRVFLGA 530 (640)
Q Consensus 507 ~vTlI~DsAv~~iM~~VdkVlvGA 530 (640)
++..|+++.-+ +.+.+|.+|.-.
T Consensus 111 ~vi~IT~~~~s-l~~~ad~~l~~~ 133 (180)
T 1jeo_A 111 NIIAIVCECGN-VVEFADLTIPLE 133 (180)
T ss_dssp CEEEEESSCCG-GGGGCSEEEECC
T ss_pred cEEEEeCCCCh-HHHhCCEEEEeC
Confidence 99999998777 777899887654
No 30
>1k6d_A Acetate COA-transferase alpha subunit; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Escherichia coli} SCOP: c.124.1.2
Probab=75.91 E-value=11 Score=36.79 Aligned_cols=43 Identities=14% Similarity=0.172 Sum_probs=29.0
Q ss_pred hccEEEEcceeEecCCCeeccc--c--hHHHHHHHhhCCCcEEEecccccccc
Q 006577 522 EVTRVFLGASSVLSNGTVCSRV--G--TACVAMVAYGFHIPVLVCCEAYKFHE 570 (640)
Q Consensus 522 ~VdkVlvGADaIlaNG~VvNKi--G--T~~lAlaAk~~~VPVyV~aetyKf~~ 570 (640)
++|..|+-|...-.+|.+.-.. + +..+|.+|+ .|+++.-++.+
T Consensus 148 ~~DVAli~a~~aD~~Gn~~~~~~~~~~~~~~a~aA~------~VIveVn~~vp 194 (220)
T 1k6d_A 148 RADLALIRAHRCDTLGNLTYQLSARNFNPLIALAAD------ITLVEPDELVE 194 (220)
T ss_dssp CEEEEEEEEEEEETTCCEECCHHHHTTHHHHHHHEE------EEEEEEEEEEC
T ss_pred CCcEEEEEeecCCCCceEEEecCCccccHHHHHhcC------EEEEEEccccC
Confidence 5899999999999999987653 2 223455555 55555544444
No 31
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=74.77 E-value=29 Score=29.68 Aligned_cols=60 Identities=25% Similarity=0.280 Sum_probs=35.6
Q ss_pred HHHHhCCCce---EE-Ee-chHHHHHhh-----hccEEEEcceeEecCCCeec-ccchHHHHHHHhhCCCcEEEe
Q 006577 499 RRLVRKGLSC---TY-TH-INAISYIIH-----EVTRVFLGASSVLSNGTVCS-RVGTACVAMVAYGFHIPVLVC 562 (640)
Q Consensus 499 ~eL~~~GI~v---Tl-I~-DsAv~~iM~-----~VdkVlvGADaIlaNG~VvN-KiGT~~lAlaAk~~~VPVyV~ 562 (640)
..+.+.|+++ +. +. ......++. ++|++++|+.. .|.+-. -.|+..-.+ .++-++||+|+
T Consensus 77 ~~~~~~g~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~---~~~~~~~~~Gs~~~~v-l~~~~~pVlvV 147 (147)
T 3hgm_A 77 TRATELGVPADKVRAFVKGGRPSRTIVRFARKRECDLVVIGAQG---TNGDKSLLLGSVAQRV-AGSAHCPVLVV 147 (147)
T ss_dssp HHHHHTTCCGGGEEEEEEESCHHHHHHHHHHHTTCSEEEECSSC---TTCCSCCCCCHHHHHH-HHHCSSCEEEC
T ss_pred HHHHhcCCCccceEEEEecCCHHHHHHHHHHHhCCCEEEEeCCC---CccccceeeccHHHHH-HhhCCCCEEEC
Confidence 4455679877 43 22 333333333 69999999975 223332 256655444 55667999985
No 32
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}
Probab=73.21 E-value=5.8 Score=37.08 Aligned_cols=100 Identities=8% Similarity=0.069 Sum_probs=59.7
Q ss_pred EEEeecCcHHHHH-HHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEE--ec--hHHHHHhhhccEEEEcce
Q 006577 457 VLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT--HI--NAISYIIHEVTRVFLGAS 531 (640)
Q Consensus 457 vILT~g~SstV~~-vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI--~D--sAv~~iM~~VdkVlvGAD 531 (640)
+||..|-++.+-. +++.+.++| .+|+++.-++...- .+ .++.+... .| ..+..++.++|.||--|-
T Consensus 2 ~ilItGatG~iG~~l~~~L~~~g--~~V~~~~R~~~~~~-----~~--~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~ag 72 (219)
T 3dqp_A 2 KIFIVGSTGRVGKSLLKSLSTTD--YQIYAGARKVEQVP-----QY--NNVKAVHFDVDWTPEEMAKQLHGMDAIINVSG 72 (219)
T ss_dssp EEEEESTTSHHHHHHHHHHTTSS--CEEEEEESSGGGSC-----CC--TTEEEEECCTTSCHHHHHTTTTTCSEEEECCC
T ss_pred eEEEECCCCHHHHHHHHHHHHCC--CEEEEEECCccchh-----hc--CCceEEEecccCCHHHHHHHHcCCCEEEECCc
Confidence 5788887776654 445555555 67777654432100 01 23332221 12 345566778888887665
Q ss_pred eEecCCCeecccchHHHHHHHhhCCCcEEEeccc
Q 006577 532 SVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEA 565 (640)
Q Consensus 532 aIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~aet 565 (640)
....+-.-+|-.|+..+.-+|+..+++-+|...+
T Consensus 73 ~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS 106 (219)
T 3dqp_A 73 SGGKSLLKVDLYGAVKLMQAAEKAEVKRFILLST 106 (219)
T ss_dssp CTTSSCCCCCCHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCCCCcEeEeHHHHHHHHHHHHHhCCCEEEEECc
Confidence 4433334468899999999999999876654443
No 33
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=71.83 E-value=35 Score=29.21 Aligned_cols=59 Identities=15% Similarity=0.077 Sum_probs=34.7
Q ss_pred HHHhCCC-ceEEE--echHHHHHhh------hccEEEEcceeEecCCCeec-ccchHHHHHHHhhCCCcEEEe
Q 006577 500 RLVRKGL-SCTYT--HINAISYIIH------EVTRVFLGASSVLSNGTVCS-RVGTACVAMVAYGFHIPVLVC 562 (640)
Q Consensus 500 eL~~~GI-~vTlI--~DsAv~~iM~------~VdkVlvGADaIlaNG~VvN-KiGT~~lAlaAk~~~VPVyV~ 562 (640)
.+.+.|+ +++.. .......++. ++|+|++|+..- |.+-. -.|+..-.+ .++-++||+|+
T Consensus 77 ~~~~~g~~~~~~~~~~g~~~~~I~~~~a~~~~~dliV~G~~~~---~~~~~~~~Gs~~~~v-l~~~~~pVlvV 145 (146)
T 3s3t_A 77 FVATTSAPNLKTEISYGIPKHTIEDYAKQHPEIDLIVLGATGT---NSPHRVAVGSTTSYV-VDHAPCNVIVI 145 (146)
T ss_dssp HHTTSSCCCCEEEEEEECHHHHHHHHHHHSTTCCEEEEESCCS---SCTTTCSSCHHHHHH-HHHCSSEEEEE
T ss_pred HHHhcCCcceEEEEecCChHHHHHHHHHhhcCCCEEEECCCCC---CCcceEEEcchHHHH-hccCCCCEEEe
Confidence 4445688 66643 2333333333 699999999753 22222 256655444 55667999986
No 34
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=71.64 E-value=29 Score=32.68 Aligned_cols=83 Identities=12% Similarity=0.062 Sum_probs=50.3
Q ss_pred HHHHhccCCCEEEeecCcHH--HHH-HHHHHHHcCCeeEE----------------EEcCCCCCchHHHHHHHHHhCCCc
Q 006577 447 HAVTKIRDGDVLLTYGSSSA--VEM-ILQHAHELGKQFRV----------------VIVDSRPKHEGKLLLRRLVRKGLS 507 (640)
Q Consensus 447 ~a~~~I~dgdvILT~g~Sst--V~~-vL~~A~e~Gk~f~V----------------iV~ESRP~~eG~~La~eL~~~GI~ 507 (640)
.+++.|.+...|..+|..++ +-. +-.....-|+...+ ++.-|+-..+-.++++.+.+.|++
T Consensus 39 ~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~ 118 (200)
T 1vim_A 39 EMIKLIDSARSIFVIGAGRSGYIAKAFAMRLMHLGYTVYVVGETVTPRITDQDVLVGISGSGETTSVVNISKKAKDIGSK 118 (200)
T ss_dssp HHHHHHHHSSCEEEECSHHHHHHHHHHHHHHHHTTCCEEETTSTTCCCCCTTCEEEEECSSSCCHHHHHHHHHHHHHTCE
T ss_pred HHHHHHhcCCEEEEEEecHHHHHHHHHHHHHHhcCCeEEEeCCccccCCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCe
Confidence 34455665667888876543 322 22233333432221 111122222445667888899999
Q ss_pred eEEEechHHHHHhhhccEEEEc
Q 006577 508 CTYTHINAISYIIHEVTRVFLG 529 (640)
Q Consensus 508 vTlI~DsAv~~iM~~VdkVlvG 529 (640)
+..|+++.-+.+.+.+|.+|.-
T Consensus 119 vI~IT~~~~s~La~~ad~~l~~ 140 (200)
T 1vim_A 119 LVAVTGKRDSSLAKMADVVMVV 140 (200)
T ss_dssp EEEEESCTTSHHHHHCSEEEEC
T ss_pred EEEEECCCCChHHHhCCEEEEE
Confidence 9999998888888889998863
No 35
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=71.42 E-value=5.8 Score=43.40 Aligned_cols=106 Identities=11% Similarity=0.106 Sum_probs=48.4
Q ss_pred HHHHhccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHH----------
Q 006577 447 HAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAI---------- 516 (640)
Q Consensus 447 ~a~~~I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv---------- 516 (640)
.+-..|+.||+|+..|....+..+..........-+|+|+-. ..-|..+++.|.+.|+++++|-.+.-
T Consensus 315 ~~~~~l~~GD~L~v~g~~~~l~~~~~~~~~~~~~~~viIiG~--G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~i~ 392 (565)
T 4gx0_A 315 QRETVLTEQSLLVLAGTKSQLAALEYLIGEAPEDELIFIIGH--GRIGCAAAAFLDRKPVPFILIDRQESPVCNDHVVVY 392 (565)
T ss_dssp --------------------------------CCCCEEEECC--SHHHHHHHHHHHHTTCCEEEEESSCCSSCCSSCEEE
T ss_pred CCCcEeCCCCEEEEEeCHHHHHHHHHHhcCCCCCCCEEEECC--CHHHHHHHHHHHHCCCCEEEEECChHHHhhcCCEEE
Confidence 445677889999999988776665443322111256777754 45688999999999999999873321
Q ss_pred ----------HHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEec
Q 006577 517 ----------SYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (640)
Q Consensus 517 ----------~~iM~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~a 563 (640)
..=+.++|.|++..+. .-=+..+++.||+.+....+++
T Consensus 393 gD~t~~~~L~~agi~~ad~vi~~~~~---------d~~ni~~~~~ak~l~~~~~iia 440 (565)
T 4gx0_A 393 GDATVGQTLRQAGIDRASGIIVTTND---------DSTNIFLTLACRHLHSHIRIVA 440 (565)
T ss_dssp SCSSSSTHHHHHTTTSCSEEEECCSC---------HHHHHHHHHHHHHHCSSSEEEE
T ss_pred eCCCCHHHHHhcCccccCEEEEECCC---------chHHHHHHHHHHHHCCCCEEEE
Confidence 1113356766655432 2345778899999988754444
No 36
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=70.54 E-value=24 Score=35.23 Aligned_cols=101 Identities=9% Similarity=0.160 Sum_probs=56.2
Q ss_pred CCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEech------------HHHHHhh
Q 006577 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN------------AISYIIH 521 (640)
Q Consensus 454 dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds------------Av~~iM~ 521 (640)
...+++|-|.+..+..++..+.+.| -+|++.+ |.+.|...+ +...|+.+..+... .+-..+.
T Consensus 90 ~~~v~~~~g~~~a~~~~~~~~~~~g--d~vl~~~--~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l~ 163 (391)
T 4dq6_A 90 SEWLIYSPGVIPAISLLINELTKAN--DKIMIQE--PVYSPFNSV--VKNNNRELIISPLQKLENGNYIMDYEDIENKIK 163 (391)
T ss_dssp GGGEEEESCHHHHHHHHHHHHSCTT--CEEEECS--SCCTHHHHH--HHHTTCEEEECCCEECTTSCEECCHHHHHHHCT
T ss_pred HHHeEEcCChHHHHHHHHHHhCCCC--CEEEEcC--CCCHHHHHH--HHHcCCeEEeeeeeecCCCceEeeHHHHHHHhh
Confidence 3467777776666666666654334 3555543 666665433 34567777665422 3333444
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 522 ~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
+ .++++=...-...|.++..---..++-+|++|++.+++
T Consensus 164 ~-~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~ 202 (391)
T 4dq6_A 164 D-VKLFILCNPHNPVGRVWTKDELKKLGDICLKHNVKIIS 202 (391)
T ss_dssp T-EEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred c-CCEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEe
Confidence 4 34333222222345444444445666789999998887
No 37
>2oas_A ATOA, 4-hydroxybutyrate coenzyme A transferase; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; HET: COA; 2.40A {Shewanella oneidensis}
Probab=68.75 E-value=6.6 Score=42.53 Aligned_cols=97 Identities=12% Similarity=0.145 Sum_probs=61.3
Q ss_pred HHHHHhccCCCEEEeecCcHHHHHHHHHHHHcC---CeeEEEEcCC-C----------------CCchHHHHHHHHHhCC
Q 006577 446 KHAVTKIRDGDVLLTYGSSSAVEMILQHAHELG---KQFRVVIVDS-R----------------PKHEGKLLLRRLVRKG 505 (640)
Q Consensus 446 ~~a~~~I~dgdvILT~g~SstV~~vL~~A~e~G---k~f~ViV~ES-R----------------P~~eG~~La~eL~~~G 505 (640)
+.|+++|++|++|...++.+.-..++....+++ ++++++..-+ . +++-|..+.+...+-+
T Consensus 10 eeAv~~IkdG~tI~~ggf~g~P~~Li~AL~~r~~~~kdLtl~~~~s~g~~~~~~~~l~~~i~~~~~~~~~~lr~~i~~G~ 89 (436)
T 2oas_A 10 LEAVSLIRSGETLWTHSMGATPKVLLDALAKHALTLDNITLLQLHTEGAESLSHPSLLGHLRHRCFFGGVPTRPLLQSGD 89 (436)
T ss_dssp HHHHTTCCTTCEEEECCBTTCCHHHHHHHHHHGGGCCSEEEEESSBSSCGGGGSGGGTTTEEEEESSCCTTTHHHHHTTS
T ss_pred HHHHhhCCCCCEEEECCccCcHHHHHHHHHHhhccCCCEEEEEecccCChhhhHHHhcCcEEEeecCCCHHHHHHHHcCC
Confidence 346778999999999888765555555544443 6788876321 1 1222223334444444
Q ss_pred CceEEEechHHHHHhh----hccEEEEcceeEecCCCeecc
Q 006577 506 LSCTYTHINAISYIIH----EVTRVFLGASSVLSNGTVCSR 542 (640)
Q Consensus 506 I~vTlI~DsAv~~iM~----~VdkVlvGADaIlaNG~VvNK 542 (640)
+..+-+..+.+..++. .+|..|+.|...-.+|.+.-.
T Consensus 90 ~~y~P~~ls~~~~~l~~~~l~~DVAlI~as~aD~~Gn~s~~ 130 (436)
T 2oas_A 90 ADYVPIFLSEVPKLFRSGEQKIDTAIIQVSPPDKHGMCSLG 130 (436)
T ss_dssp SEECCCCGGGHHHHHHTTSSCCSEEEEEECCCCTTCEEECT
T ss_pred CeeeCCccccHHHHHHcCCCCCCEEEEEeccCCCCceEEEe
Confidence 5444444555554444 589999999999999987654
No 38
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=68.63 E-value=31 Score=31.58 Aligned_cols=37 Identities=11% Similarity=-0.184 Sum_probs=30.1
Q ss_pred hHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEc
Q 006577 493 EGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLG 529 (640)
Q Consensus 493 eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvG 529 (640)
+-.++++.+.+.|+++..|+++.-+.+.+.+|.+|.-
T Consensus 94 ~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l~~ 130 (186)
T 1m3s_A 94 SLIHTAAKAKSLHGIVAALTINPESSIGKQADLIIRM 130 (186)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCTTSHHHHHCSEEEEC
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCCchHHhCCEEEEe
Confidence 4455668889999999999998877787889988754
No 39
>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis} PDB: 3qlk_A 3s8d_A
Probab=67.79 E-value=10 Score=41.48 Aligned_cols=96 Identities=15% Similarity=0.153 Sum_probs=63.5
Q ss_pred HHHHHHhccCCCEEEeecCcHHHHHHHHHHHH-----cCCeeEEEEcC---------C----------CCCchHHHHHHH
Q 006577 445 VKHAVTKIRDGDVLLTYGSSSAVEMILQHAHE-----LGKQFRVVIVD---------S----------RPKHEGKLLLRR 500 (640)
Q Consensus 445 a~~a~~~I~dgdvILT~g~SstV~~vL~~A~e-----~Gk~f~ViV~E---------S----------RP~~eG~~La~e 500 (640)
++.|+.+|++|++|.+-+..+.-..++....+ .-+++++|..- . ++++.| ...+.
T Consensus 29 aeEAv~lIkdGdtV~~gG~~g~P~~L~~AL~~r~~~g~~~~ltl~~~~~~G~~~~~~~~~~~~~~~~~~~~f~~-~~~R~ 107 (455)
T 3qli_A 29 PEEAVSSIASGSHLSMGMFAAEPPALLKALADRATRGDIGDLRVYYFETAKIAGDTILRYELNNRIKPYSMFVT-AVERA 107 (455)
T ss_dssp HHHHTTTCCTTCEEEECSGGGSCHHHHHHHHHHHHTTCCCSEEEEESSCCHHHHHTTTCGGGTTTEEEEESSCC-HHHHH
T ss_pred HHHHHHhCCCCCEEEECCcccCHHHHHHHHHHHHhhCCCcceEEEEecccccchhhhhChhhcCcEEEeeCcCC-hhHHH
Confidence 34577899999999998876543333333222 22557776421 1 134555 33466
Q ss_pred HHhCC--------CceEEEechHHHHHhh---hccEEEEcceeEecCCCeec
Q 006577 501 LVRKG--------LSCTYTHINAISYIIH---EVTRVFLGASSVLSNGTVCS 541 (640)
Q Consensus 501 L~~~G--------I~vTlI~DsAv~~iM~---~VdkVlvGADaIlaNG~VvN 541 (640)
+.+.| ++.+-+..+.+..+++ .+|.+|+.|..+-.+|.+.-
T Consensus 108 ~i~~G~~~~~~~~~~y~p~~ls~~p~~~~~~~~iDVAli~vs~~D~~G~~s~ 159 (455)
T 3qli_A 108 LIRRGIEDGGRKVVNYVPSNFHQAPRLLAEEIGIDTFMHTVSPMDCHGYFSL 159 (455)
T ss_dssp HHHHHHHTTTCCCCCCCCCCGGGHHHHHHTTTCCSEEEEEECCCCTTSEEEC
T ss_pred HHhCCCcccCcCcEEEECccHHHHHHHHHhcCCCCEEEEEEecCCCCceEEE
Confidence 66666 5555566788888876 58999999999999998764
No 40
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}
Probab=67.01 E-value=32 Score=34.66 Aligned_cols=102 Identities=18% Similarity=0.163 Sum_probs=56.3
Q ss_pred cCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEech-------HHHHHhh-hcc
Q 006577 453 RDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN-------AISYIIH-EVT 524 (640)
Q Consensus 453 ~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds-------Av~~iM~-~Vd 524 (640)
....+++|-|.+..+..++....+.|. +|++. .|.+.+.. ..+...|+.+..+.-. -+..+-+ ++.
T Consensus 90 ~~~~v~~t~g~~~al~~~~~~l~~~gd--~vl~~--~p~~~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~ 163 (391)
T 3h14_A 90 DPGRVVITPGSSGGFLLAFTALFDSGD--RVGIG--APGYPSYR--QILRALGLVPVDLPTAPENRLQPVPADFAGLDLA 163 (391)
T ss_dssp CGGGEEEESSHHHHHHHHHHHHCCTTC--EEEEE--ESCCHHHH--HHHHHTTCEEEEEECCGGGTTSCCHHHHTTSCCS
T ss_pred CHHHEEEecChHHHHHHHHHHhcCCCC--EEEEc--CCCCccHH--HHHHHcCCEEEEeecCcccCCCCCHHHHHhcCCe
Confidence 345677877766666666665544443 45544 35665544 3444578888777532 1222222 345
Q ss_pred EEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 525 RVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 525 kVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
.|++. ..--..|.++..---..++-+|+.|++.+++
T Consensus 164 ~v~i~-~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 199 (391)
T 3h14_A 164 GLMVA-SPANPTGTMLDHAAMGALIEAAQAQGASFIS 199 (391)
T ss_dssp EEEEE-SSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred EEEEC-CCCCCCCccCCHHHHHHHHHHHHHcCCEEEE
Confidence 55443 1112234444333345567789999998876
No 41
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2
Probab=66.97 E-value=19 Score=35.13 Aligned_cols=102 Identities=10% Similarity=0.034 Sum_probs=61.2
Q ss_pred CEEEeecCcHHHHH-HHHHHHHcCCeeEEEEcCCCCCc---hHHHHHHHHHhCCCceEEE--ec-hHHHHHhhhccEEEE
Q 006577 456 DVLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKH---EGKLLLRRLVRKGLSCTYT--HI-NAISYIIHEVTRVFL 528 (640)
Q Consensus 456 dvILT~g~SstV~~-vL~~A~e~Gk~f~ViV~ESRP~~---eG~~La~eL~~~GI~vTlI--~D-sAv~~iM~~VdkVlv 528 (640)
.+||..|-++.+-. +++.+.++| ++|+++.-++.. +.......|...|+.+... .| .++..+++.+|.||.
T Consensus 5 ~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~ 82 (313)
T 1qyd_A 5 SRVLIVGGTGYIGKRIVNASISLG--HPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVIS 82 (313)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHTT--CCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEE
T ss_pred CEEEEEcCCcHHHHHHHHHHHhCC--CcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHhCCCEEEE
Confidence 46888887765533 445555556 566666443321 2222334565667654322 22 356677778888876
Q ss_pred cceeEecCCCeecccchHHHHHHHhhCC-CcEEEe
Q 006577 529 GASSVLSNGTVCSRVGTACVAMVAYGFH-IPVLVC 562 (640)
Q Consensus 529 GADaIlaNG~VvNKiGT~~lAlaAk~~~-VPVyV~ 562 (640)
-|-.... + .|-.|+..+.-+|+..+ +.-+|.
T Consensus 83 ~a~~~~~-~--~~~~~~~~l~~aa~~~g~v~~~v~ 114 (313)
T 1qyd_A 83 ALAGGVL-S--HHILEQLKLVEAIKEAGNIKRFLP 114 (313)
T ss_dssp CCCCSSS-S--TTTTTHHHHHHHHHHSCCCSEEEC
T ss_pred CCccccc-h--hhHHHHHHHHHHHHhcCCCceEEe
Confidence 5532211 1 26778999999999998 988874
No 42
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Probab=66.57 E-value=35 Score=33.96 Aligned_cols=109 Identities=11% Similarity=0.077 Sum_probs=65.0
Q ss_pred CCCEEEeecCcHHHHH-HHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHh-------CCCceEEEe---chHHHHHhhh
Q 006577 454 DGDVLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVR-------KGLSCTYTH---INAISYIIHE 522 (640)
Q Consensus 454 dgdvILT~g~SstV~~-vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~-------~GI~vTlI~---DsAv~~iM~~ 522 (640)
.+.+||..|-++.+-. +++.+.++| .+|+++.-++...-. ....|.. .++.+...- ...+..++.+
T Consensus 24 ~~~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 100 (351)
T 3ruf_A 24 SPKTWLITGVAGFIGSNLLEKLLKLN--QVVIGLDNFSTGHQY-NLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKG 100 (351)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEECCSSCCHH-HHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTT
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHCC--CEEEEEeCCCCCchh-hhhhhhhccccccCCceEEEEccCCCHHHHHHHhcC
Confidence 4678999998887654 445555666 577777655443222 2233333 344433221 2345667778
Q ss_pred ccEEEEcceeEecCC--------CeecccchHHHHHHHhhCCCcEEEeccc
Q 006577 523 VTRVFLGASSVLSNG--------TVCSRVGTACVAMVAYGFHIPVLVCCEA 565 (640)
Q Consensus 523 VdkVlvGADaIlaNG--------~VvNKiGT~~lAlaAk~~~VPVyV~aet 565 (640)
+|.||--|-....+. .-+|-.||..+.-+|+.+++.-+|.+.+
T Consensus 101 ~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS 151 (351)
T 3ruf_A 101 VDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYAAS 151 (351)
T ss_dssp CSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred CCEEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEec
Confidence 888876663211110 1357889999999999999866665544
No 43
>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}
Probab=65.15 E-value=11 Score=37.58 Aligned_cols=112 Identities=10% Similarity=0.064 Sum_probs=65.6
Q ss_pred CCCEEEeecCcHHHHH-HHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHh-CCCceEEE---echHHHHHhhh--ccEE
Q 006577 454 DGDVLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVR-KGLSCTYT---HINAISYIIHE--VTRV 526 (640)
Q Consensus 454 dgdvILT~g~SstV~~-vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~-~GI~vTlI---~DsAv~~iM~~--VdkV 526 (640)
.+.+||..|-++.+-. +++.+.++|..++|++.+..+..........+.. .++.+... ....+..++.. +|.|
T Consensus 23 ~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~V 102 (346)
T 4egb_A 23 NAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGNLNNVKSIQDHPNYYFVKGEIQNGELLEHVIKERDVQVI 102 (346)
T ss_dssp -CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHTCCEE
T ss_pred CCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEeccccccchhhhhhhccCCCeEEEEcCCCCHHHHHHHHhhcCCCEE
Confidence 4568999999887654 4566667787889998875542211111111111 23322211 12345666776 9998
Q ss_pred EEcceeEecCC--------CeecccchHHHHHHHhhCCCcEEEeccc
Q 006577 527 FLGASSVLSNG--------TVCSRVGTACVAMVAYGFHIPVLVCCEA 565 (640)
Q Consensus 527 lvGADaIlaNG--------~VvNKiGT~~lAlaAk~~~VPVyV~aet 565 (640)
|--|-....+. .-+|-.||..+.-+|+.++++-+|.+.+
T Consensus 103 ih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS 149 (346)
T 4egb_A 103 VNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYPHIKLVQVST 149 (346)
T ss_dssp EECCCCC---------CHHHHHHTHHHHHHHHHHHHSTTSEEEEEEE
T ss_pred EECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 87664332211 1357789999999999999985554443
No 44
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}
Probab=63.83 E-value=22 Score=34.65 Aligned_cols=99 Identities=11% Similarity=0.050 Sum_probs=57.9
Q ss_pred CCEEEeecCcHHHHH-HHHHHHHcCCeeEEEEcCCCC-C--c--hHHHHHHHHHhCCCceEEEe--c-hHHHHHhhhccE
Q 006577 455 GDVLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRP-K--H--EGKLLLRRLVRKGLSCTYTH--I-NAISYIIHEVTR 525 (640)
Q Consensus 455 gdvILT~g~SstV~~-vL~~A~e~Gk~f~ViV~ESRP-~--~--eG~~La~eL~~~GI~vTlI~--D-sAv~~iM~~Vdk 525 (640)
+.+||..|-++.+=. +++.+.++| ++|+++.-++ . . +-......|...|+.+...- | .++..+++.+|.
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~ 79 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAG--NPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIKQVDI 79 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHT--CCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSE
T ss_pred CcEEEEECCCchHHHHHHHHHHhCC--CcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhCCCE
Confidence 346888888765533 445555566 4555554333 1 1 22223356667787654322 2 355666777777
Q ss_pred EEEcceeEecCCCeecccchHHHHHHHhhCC-CcEEEe
Q 006577 526 VFLGASSVLSNGTVCSRVGTACVAMVAYGFH-IPVLVC 562 (640)
Q Consensus 526 VlvGADaIlaNG~VvNKiGT~~lAlaAk~~~-VPVyV~ 562 (640)
||.-|- ...-.|+..+.-+|+..+ |.-+|.
T Consensus 80 vi~~a~-------~~~~~~~~~l~~aa~~~g~v~~~v~ 110 (307)
T 2gas_A 80 VICAAG-------RLLIEDQVKIIKAIKEAGNVKKFFP 110 (307)
T ss_dssp EEECSS-------SSCGGGHHHHHHHHHHHCCCSEEEC
T ss_pred EEECCc-------ccccccHHHHHHHHHhcCCceEEee
Confidence 765442 223567888888888887 888874
No 45
>2hj0_A Putative citrate lyase, ALFA subunit; alpha beta protein., structural genomics, PSI-2, protein STR initiative; HET: CIT; 2.70A {Streptococcus mutans}
Probab=63.66 E-value=36 Score=37.72 Aligned_cols=113 Identities=19% Similarity=0.262 Sum_probs=70.0
Q ss_pred HHHh--ccCCCEEEeecCcHH----HHHHHHHHHHcC-CeeEEEEcCCCCCc-------------------hHHHHHHHH
Q 006577 448 AVTK--IRDGDVLLTYGSSSA----VEMILQHAHELG-KQFRVVIVDSRPKH-------------------EGKLLLRRL 501 (640)
Q Consensus 448 a~~~--I~dgdvILT~g~Sst----V~~vL~~A~e~G-k~f~ViV~ESRP~~-------------------eG~~La~eL 501 (640)
|+.+ |+||++|+..++.+. +..++....+++ ++++++.....+.. -|.. .+++
T Consensus 55 Av~~~~IkdG~tV~~gGf~g~P~~l~~~Li~AL~~r~~kdLtli~~s~g~~~~~l~~~~~~g~v~r~~~~~~g~~-~r~~ 133 (519)
T 2hj0_A 55 AIEKTRLKDGMTISFHHHFREGDYVMNMVLDEIAKMGIKDISIAPSSIANVHEPLIDHIKNGVVTNITSSGLRDK-VGAA 133 (519)
T ss_dssp HHHHTTCCTTCEEEECCTTGGGBCHHHHHHHHHHHTTCCSEEEEESCCCGGGTTHHHHHHTTSEEEEEESBCHHH-HHHH
T ss_pred HHhcCCCCCCCEEEECCccCCchHHHHHHHHHHHhcCCCCeEEEeecCCCcchhHHhHhhcCcEEEEEecCCCcH-HHHH
Confidence 4557 999999999988754 335566555545 56788765332221 1111 2344
Q ss_pred HhCC---CceEEEechHHHHHhh----hccEEEEcceeEecCCCeec---cc--chHHHHHHHhhCCCcEEE
Q 006577 502 VRKG---LSCTYTHINAISYIIH----EVTRVFLGASSVLSNGTVCS---RV--GTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 502 ~~~G---I~vTlI~DsAv~~iM~----~VdkVlvGADaIlaNG~VvN---Ki--GT~~lAlaAk~~~VPVyV 561 (640)
.+.| +|+.|-......+++. .+|..|+.|...-.+|.+.- +. |+...+.++.....-|++
T Consensus 134 i~~G~~~~P~~l~~~gG~~~ll~~~~l~~DVAlI~as~aD~~Gnls~~~g~s~~~s~~~~~~~a~~A~~VIa 205 (519)
T 2hj0_A 134 ISEGIMENPVIIRSHGGRARAIATDDIHIDVAFLGAPSSDAYGNANGTRGKTTCGSLGYAMIDAKYADQVVI 205 (519)
T ss_dssp HHTTCCSSCEEECCHHHHHHHHHHTSSCCSEEEEEESEECTTSCEESSSSSSCCSCCHHHHHHHHHCSEEEE
T ss_pred HHCCCCCCCceeeccCCHHHHHhcCCCCCcEEEEEecccCCCCcEEEecCccccccchhhHHHHhhCCEEEE
Confidence 4455 4665543333677775 58999999999999999873 22 344555555555554554
No 46
>3cdk_A Succinyl-COA:3-ketoacid-coenzyme A transferase subunit A; CO-expressed complex, hetero-tetramer, structural genomics, PSI-2; 2.59A {Bacillus subtilis}
Probab=63.61 E-value=33 Score=34.06 Aligned_cols=44 Identities=18% Similarity=0.104 Sum_probs=30.4
Q ss_pred hccEEEEcceeEecCCCeecc-c-c--hHHHHHHHhhCCCcEEEeccccccccc
Q 006577 522 EVTRVFLGASSVLSNGTVCSR-V-G--TACVAMVAYGFHIPVLVCCEAYKFHER 571 (640)
Q Consensus 522 ~VdkVlvGADaIlaNG~VvNK-i-G--T~~lAlaAk~~~VPVyV~aetyKf~~~ 571 (640)
++|..|+-|...-.+|.+.-. . + ...+|.+|+ +|+++.-++.++
T Consensus 151 ~~DVAlI~a~~aD~~Gn~~~~~~~~~~~~~~a~aAk------~VIveVn~~vp~ 198 (241)
T 3cdk_A 151 TGDVAIVKAWKADTMGNLIFRKTARNFNPIAAMAGK------ITIAEAEEIVEA 198 (241)
T ss_dssp CEEEEEEEEEEEETTCCEECCGGGCTTHHHHHHHEE------EEEEEEEEEECT
T ss_pred CCcEEEEEeccCCCCCeEEEecCchhhHHHHHHhCC------EEEEEEeCCCCc
Confidence 589999999999999997765 2 2 344566666 555565444443
No 47
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3
Probab=63.26 E-value=39 Score=34.15 Aligned_cols=101 Identities=15% Similarity=0.184 Sum_probs=51.1
Q ss_pred CCEEEeecCcHHHHHHHHHHH------HcCCeeEEEEcCCCCCchHHHHH-HHHHhC---CCceEEEe-chHHHHHhhhc
Q 006577 455 GDVLLTYGSSSAVEMILQHAH------ELGKQFRVVIVDSRPKHEGKLLL-RRLVRK---GLSCTYTH-INAISYIIHEV 523 (640)
Q Consensus 455 gdvILT~g~SstV~~vL~~A~------e~Gk~f~ViV~ESRP~~eG~~La-~eL~~~---GI~vTlI~-DsAv~~iM~~V 523 (640)
..+++|-|.+..+..+|..+. +.|. +|+++ +.+.+.+...+ ..+.+. |+.+.++. ...+-..+..-
T Consensus 89 ~~v~~~~g~t~al~~al~~~~~~~~~~~~gd--~vii~-~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~l~~~i~~~ 165 (416)
T 1qz9_A 89 GEVVVTDTTSINLFKVLSAALRVQATRSPER--RVIVT-ETSNFPTDLYIAEGLADMLQQGYTLRLVDSPEELPQAIDQD 165 (416)
T ss_dssp TSEEECSCHHHHHHHHHHHHHHHHHHHSTTC--CEEEE-ETTSCHHHHHHHHHHHHHHCSSCEEEEESSGGGHHHHCSTT
T ss_pred ccEEEeCChhHHHHHHHHhhcccccccCCCC--cEEEE-cCCCCCchHHHHHHHHHHhcCCceEEEeCcHHHHHHHhCCC
Confidence 456777554444544555443 3343 34444 23444433222 233333 88888775 33444444322
Q ss_pred cEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 524 TRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 524 dkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
.++|+-...-...|.+.. --.|+-+|++||+.+++
T Consensus 166 ~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~ 200 (416)
T 1qz9_A 166 TAVVMLTHVNYKTGYMHD---MQALTALSHECGALAIW 200 (416)
T ss_dssp EEEEEEESBCTTTCBBCC---HHHHHHHHHHHTCEEEE
T ss_pred ceEEEEeccccCcccccC---HHHHHHHHHHcCCEEEE
Confidence 233332222223355544 35677789999998776
No 48
>2o8r_A Polyphosphate kinase; structural genomics, protein structure initiative, PSI, nysgrc, NEW YORK structural genomics research consortium; HET: MSE; 2.70A {Porphyromonas gingivalis} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4
Probab=62.99 E-value=7.4 Score=44.90 Aligned_cols=47 Identities=26% Similarity=0.320 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHcCCeeEEEEcCCCCCch--HHHHHHHHHhCCCceEEE
Q 006577 465 SAVEMILQHAHELGKQFRVVIVDSRPKHE--GKLLLRRLVRKGLSCTYT 511 (640)
Q Consensus 465 stV~~vL~~A~e~Gk~f~ViV~ESRP~~e--G~~La~eL~~~GI~vTlI 511 (640)
+-+...|..|+++|++.+|+|.-.....+ ....++.|.++|+.|.|-
T Consensus 384 s~Iv~ALi~AA~rGv~V~vLvel~arfdee~ni~wa~~Le~aGv~Vv~g 432 (705)
T 2o8r_A 384 SSIISALEAAAQSGKKVSVFVELKARFDEENNLRLSERMRRSGIRIVYS 432 (705)
T ss_dssp CHHHHHHHHHHHTTCEEEEEECCCSCC----CHHHHHHHHHHTCEEEEC
T ss_pred HHHHHHHHHHHHCCCEEEEEEeCCCCcchhhhHHHHHHHHHCCCEEEEc
Confidence 44566677777788888888774333333 566778888888888774
No 49
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=62.74 E-value=33 Score=30.85 Aligned_cols=99 Identities=11% Similarity=0.080 Sum_probs=60.2
Q ss_pred cCCCEEEeecCcH-------HHHHHHHHHH--HcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEE----EechHHHHH
Q 006577 453 RDGDVLLTYGSSS-------AVEMILQHAH--ELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTY----THINAISYI 519 (640)
Q Consensus 453 ~dgdvILT~g~Ss-------tV~~vL~~A~--e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTl----I~DsAv~~i 519 (640)
.++.+|+..|+-. .+..++.... +.+.+++++++-..+...-..+-..+.+.+ .+++ +...-+..+
T Consensus 34 ~~~~~i~~~G~~~~~~K~~~~li~a~~~l~~~~~~~~~~l~i~G~~~~~~~~~l~~~~~~~~-~v~~~~g~~~~~~~~~~ 112 (200)
T 2bfw_A 34 DEGVTFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEKHG-NVKVITEMLSREFVREL 112 (200)
T ss_dssp CSCEEEEEESCBCSSSSCHHHHHHHHHHHTTSGGGGGEEEEEECCBCHHHHHHHHHHHHHCT-TEEEECSCCCHHHHHHH
T ss_pred CCCCEEEEeeccccccCCHHHHHHHHHHHHhhccCCCeEEEEECCCChHHHHHHHHHHHhcC-CEEEEeccCCHHHHHHH
Confidence 4455788777654 2344444444 445678888886654112233445555566 7777 344578899
Q ss_pred hhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEe
Q 006577 520 IHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (640)
Q Consensus 520 M~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~ 562 (640)
|..+|.+|+.... .| .|. ..+=|-.+|+||++.
T Consensus 113 ~~~ad~~l~ps~~---e~-----~~~--~~~Ea~a~G~PvI~~ 145 (200)
T 2bfw_A 113 YGSVDFVIIPSYF---EP-----FGL--VALEAMCLGAIPIAS 145 (200)
T ss_dssp HTTCSEEEECCSC---CS-----SCH--HHHHHHHTTCEEEEE
T ss_pred HHHCCEEEECCCC---CC-----ccH--HHHHHHHCCCCEEEe
Confidence 9999999986432 22 232 345566689998874
No 50
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=62.71 E-value=35 Score=31.04 Aligned_cols=86 Identities=12% Similarity=0.016 Sum_probs=50.1
Q ss_pred CCEEEeecCcHHHHHHHHHHHHc-CCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEe--chH-HHHH--hhhccEEEE
Q 006577 455 GDVLLTYGSSSAVEMILQHAHEL-GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH--INA-ISYI--IHEVTRVFL 528 (640)
Q Consensus 455 gdvILT~g~SstV~~vL~~A~e~-Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~--DsA-v~~i--M~~VdkVlv 528 (640)
++.|+.+|+...-..+.+.+.+. | ++|+++|..|. -+..|.+.|+.+.+.. |.. +..+ +.++|.||+
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~~g--~~V~vid~~~~-----~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~ 111 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARYG--KISLGIEIREE-----AAQQHRSEGRNVISGDATDPDFWERILDTGHVKLVLL 111 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHHHC--SCEEEEESCHH-----HHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCCEEEE
T ss_pred CCcEEEECCCHHHHHHHHHHHhccC--CeEEEEECCHH-----HHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCCEEEE
Confidence 56788889876656666666666 6 46777776652 2455677888765432 211 2222 456677766
Q ss_pred cceeEecCCCeecccchHHHHHHHhhCC
Q 006577 529 GASSVLSNGTVCSRVGTACVAMVAYGFH 556 (640)
Q Consensus 529 GADaIlaNG~VvNKiGT~~lAlaAk~~~ 556 (640)
.... ......++..++..+
T Consensus 112 ~~~~---------~~~~~~~~~~~~~~~ 130 (183)
T 3c85_A 112 AMPH---------HQGNQTALEQLQRRN 130 (183)
T ss_dssp CCSS---------HHHHHHHHHHHHHTT
T ss_pred eCCC---------hHHHHHHHHHHHHHC
Confidence 4321 223345556777766
No 51
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=62.42 E-value=40 Score=30.79 Aligned_cols=38 Identities=13% Similarity=0.103 Sum_probs=31.4
Q ss_pred hHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEcc
Q 006577 493 EGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA 530 (640)
Q Consensus 493 eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGA 530 (640)
+-..+++.+.+.|+++..|+++.-+.+-+.+|.+|.-.
T Consensus 102 ~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l~~~ 139 (187)
T 3sho_A 102 DTVAALAGAAERGVPTMALTDSSVSPPARIADHVLVAA 139 (187)
T ss_dssp HHHHHHHHHHHTTCCEEEEESCTTSHHHHHCSEEEECC
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCCCcchhhCcEEEEec
Confidence 44566688889999999999988888888899988754
No 52
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=62.35 E-value=97 Score=28.56 Aligned_cols=38 Identities=0% Similarity=-0.279 Sum_probs=30.4
Q ss_pred hHHHHHHHHHhCCCceEEEechHHHHHhhh---ccEEEEcc
Q 006577 493 EGKLLLRRLVRKGLSCTYTHINAISYIIHE---VTRVFLGA 530 (640)
Q Consensus 493 eG~~La~eL~~~GI~vTlI~DsAv~~iM~~---VdkVlvGA 530 (640)
+=.++++.+.+.|+++..|+++.-+.+.+. +|.+|.-.
T Consensus 128 ~~i~~~~~ak~~g~~vI~IT~~~~s~La~~~~~ad~~l~~~ 168 (199)
T 1x92_A 128 NVIQAIQAAHDREMLVVALTGRDGGGMASLLLPEDVEIRVP 168 (199)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHCCTTCEEEECS
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCCcHHhccccCCEEEEeC
Confidence 335566888899999999999887888777 99887643
No 53
>1xr4_A Putative citrate lyase alpha chain/citrate-ACP TR; the midwest center for structural genomics, MCSG, structural genomics; 2.37A {Salmonella typhimurium} SCOP: c.124.1.2 c.124.1.2
Probab=61.25 E-value=42 Score=37.11 Aligned_cols=114 Identities=14% Similarity=0.153 Sum_probs=68.6
Q ss_pred HHHHh--ccCCCEEEeecCcHH----HHHHHHHHHHcC-CeeEEEEcCCCCC-------------------chHHHHHHH
Q 006577 447 HAVTK--IRDGDVLLTYGSSSA----VEMILQHAHELG-KQFRVVIVDSRPK-------------------HEGKLLLRR 500 (640)
Q Consensus 447 ~a~~~--I~dgdvILT~g~Sst----V~~vL~~A~e~G-k~f~ViV~ESRP~-------------------~eG~~La~e 500 (640)
.|+++ |++|++|...+..+. +..+..++.++| ++++++-....+. +-|..+. +
T Consensus 51 EAv~~~~IkdG~tV~~gg~~G~P~~Li~AL~~r~~~~g~kdLtli~~s~g~~~~~l~~~i~~g~v~r~~~~~~g~~~r-~ 129 (509)
T 1xr4_A 51 EAIRRSGLKNGMTISFHHAFRGGDKVVNMVMAKLAEMGFRDLTLASSSLIDAHWPLIEHIKNGVVRQIYTSGLRGKLG-E 129 (509)
T ss_dssp HHHHHTTCCTTCEEEECCTTGGGCCHHHHHHHHHHHTTCCSEEEEESCCCGGGTTHHHHHHTTSEEEEEESBCCHHHH-H
T ss_pred HHhcCCCCCCcCEEEECCccCCHHHHHHHHHHHHHhcCCcceEEEecCCcCcchhHHHHhhcCceEEEEEccCCHHHH-H
Confidence 35567 899999998876643 444445555444 5678875432221 1122222 2
Q ss_pred HHh---CCCceEEEechHHHHHhh----hccEEEEcceeEecCCCeecccc-----hHHHHHHHhhCCCcEEE
Q 006577 501 LVR---KGLSCTYTHINAISYIIH----EVTRVFLGASSVLSNGTVCSRVG-----TACVAMVAYGFHIPVLV 561 (640)
Q Consensus 501 L~~---~GI~vTlI~DsAv~~iM~----~VdkVlvGADaIlaNG~VvNKiG-----T~~lAlaAk~~~VPVyV 561 (640)
+.+ ..+++.|..-....+++. .+|..|+.|...-.+|.+.-+-| +...+.++.....-|++
T Consensus 130 ~i~~G~~~~P~~~s~~~g~p~ll~~~~l~iDVAlI~as~aD~~Gnls~~~g~~~~~s~~~~~a~a~~A~~VIa 202 (509)
T 1xr4_A 130 EISAGLMENPVQIHSHGGRVKLIQSGELNIDVAFLGVPCCDEFGNANGFSGKSRCGSLGYAQVDAQYAKCVVL 202 (509)
T ss_dssp HHHHTCCSSCEEECCHHHHHHHHHTTSSCCSEEEEEESEEETTCCEESSSSSSCCCCCTTHHHHHHHCSEEEE
T ss_pred HHHcCCCcCCeeEeccCCHHHHHhcCCCCceEEEEEeccCCCCceEEEeCCCCcccchHHHHHHHhhCCEEEE
Confidence 222 246777764334667775 68999999999999999875333 44445555555554554
No 54
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*
Probab=61.22 E-value=18 Score=35.58 Aligned_cols=96 Identities=10% Similarity=0.095 Sum_probs=58.7
Q ss_pred EEEeecCcHHHHH-HHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEe--c-hHHHHHhhhccEEEEccee
Q 006577 457 VLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH--I-NAISYIIHEVTRVFLGASS 532 (640)
Q Consensus 457 vILT~g~SstV~~-vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~--D-sAv~~iM~~VdkVlvGADa 532 (640)
+||..|-++.+-. +++.+.++| ++|+++.-++. .-......|...|+.+...- | .++..+++.+|.||.-|.
T Consensus 13 ~ilVtGatG~iG~~l~~~L~~~g--~~V~~l~R~~~-~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~~a~- 88 (318)
T 2r6j_A 13 KILIFGGTGYIGNHMVKGSLKLG--HPTYVFTRPNS-SKTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVDVVISALA- 88 (318)
T ss_dssp CEEEETTTSTTHHHHHHHHHHTT--CCEEEEECTTC-SCHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCC-
T ss_pred eEEEECCCchHHHHHHHHHHHCC--CcEEEEECCCC-chhhHHHHhhcCCCEEEEecCCCHHHHHHHHcCCCEEEECCc-
Confidence 6888888765433 445555566 45666544332 22233455667787654322 2 356667777777766542
Q ss_pred EecCCCeecccchHHHHHHHhhCC-CcEEEe
Q 006577 533 VLSNGTVCSRVGTACVAMVAYGFH-IPVLVC 562 (640)
Q Consensus 533 IlaNG~VvNKiGT~~lAlaAk~~~-VPVyV~ 562 (640)
..+-.++..+.-+|+..+ +..+|.
T Consensus 89 ------~~~~~~~~~l~~aa~~~g~v~~~v~ 113 (318)
T 2r6j_A 89 ------FPQILDQFKILEAIKVAGNIKRFLP 113 (318)
T ss_dssp ------GGGSTTHHHHHHHHHHHCCCCEEEC
T ss_pred ------hhhhHHHHHHHHHHHhcCCCCEEEe
Confidence 223567888888888887 988874
No 55
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=60.87 E-value=89 Score=27.65 Aligned_cols=103 Identities=17% Similarity=0.216 Sum_probs=55.5
Q ss_pred EEEeecC-cHHHHHHHHHH----HHcCCeeEEE-EcCCCCCc------hHHHH----HHHHHhCCCceEE---Ee-chHH
Q 006577 457 VLLTYGS-SSAVEMILQHA----HELGKQFRVV-IVDSRPKH------EGKLL----LRRLVRKGLSCTY---TH-INAI 516 (640)
Q Consensus 457 vILT~g~-SstV~~vL~~A----~e~Gk~f~Vi-V~ESRP~~------eG~~L----a~eL~~~GI~vTl---I~-DsAv 516 (640)
+++-+.. |..-...|..| ...+-.+.++ |.+..+.. ++.+. ...|.+.|+++.+ +. ....
T Consensus 27 ILv~vD~~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~v~~G~~~ 106 (155)
T 3dlo_A 27 IVVAVDKKSDRAERVLRFAAEEARLRGVPVYVVHSLPGGGRTKDEDIIEAKETLSWAVSIIRKEGAEGEEHLLVRGKEPP 106 (155)
T ss_dssp EEEECCSSSHHHHHHHHHHHHHHHHHTCCEEEEEEECCSTTSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEESSSCHH
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCCcccHHHHHHHHHHHHHHHHHHHhcCCCceEEEEecCCCHH
Confidence 4555677 76544444443 3345566544 44432211 12222 2455667988764 22 2222
Q ss_pred HHH---hh--hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEe
Q 006577 517 SYI---IH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (640)
Q Consensus 517 ~~i---M~--~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~ 562 (640)
-.+ .. ++|.|++|+..--.-+.+ -.|+..-. +.++-.+||+|+
T Consensus 107 ~~I~~~a~~~~~DLIV~G~~g~~~~~~~--~lGSv~~~-vl~~a~~PVLvV 154 (155)
T 3dlo_A 107 DDIVDFADEVDAIAIVIGIRKRSPTGKL--IFGSVARD-VILKANKPVICI 154 (155)
T ss_dssp HHHHHHHHHTTCSEEEEECCEECTTSCE--ECCHHHHH-HHHHCSSCEEEE
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCCCCE--EeccHHHH-HHHhCCCCEEEe
Confidence 333 33 699999999875322221 25655444 456778999986
No 56
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=60.72 E-value=34 Score=31.17 Aligned_cols=93 Identities=15% Similarity=0.178 Sum_probs=60.9
Q ss_pred cCCCEEEeecCc--HHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEec----------hHHHHHh
Q 006577 453 RDGDVLLTYGSS--SAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI----------NAISYII 520 (640)
Q Consensus 453 ~dgdvILT~g~S--stV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D----------sAv~~iM 520 (640)
..| ++++.+.. .-+..+.+..++ ..|++|.++ | .++.|.+.||+|+.+.. ..+..++
T Consensus 24 ~~g-vliSv~d~dK~~l~~~a~~l~~--lGf~i~AT~------G--Ta~~L~~~Gi~v~~v~k~~egg~~~~~~~i~d~i 92 (143)
T 2yvq_A 24 QKG-ILIGIQQSFRPRFLGVAEQLHN--EGFKLFATE------A--TSDWLNANNVPATPVAWPSQEGQNPSLSSIRKLI 92 (143)
T ss_dssp CSE-EEEECCGGGHHHHHHHHHHHHT--TTCEEEEEH------H--HHHHHHHTTCCCEEECCGGGC-----CBCHHHHH
T ss_pred CCC-EEEEecccchHHHHHHHHHHHH--CCCEEEECc------h--HHHHHHHcCCeEEEEEeccCCCcccccccHHHHH
Confidence 356 77776653 224445555543 468888773 2 35788899999999863 3355555
Q ss_pred h--hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 521 H--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 521 ~--~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
+ ++|+||--.+. .--...-.|.+=-+|-.|+||++-
T Consensus 93 ~~g~i~lVInt~~~-----~~~~~~d~~~iRR~Av~~~IP~~T 130 (143)
T 2yvq_A 93 RDGSIDLVINLPNN-----NTKFVHDNYVIRRTAVDSGIPLLT 130 (143)
T ss_dssp HTTSCCEEEECCCC-----CGGGHHHHHHHHHHHHHTTCCEEC
T ss_pred HCCCceEEEECCCC-----CCcCCccHHHHHHHHHHhCCCeEc
Confidence 5 79999865432 111134567777889999999984
No 57
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=60.22 E-value=39 Score=33.57 Aligned_cols=101 Identities=11% Similarity=0.098 Sum_probs=55.6
Q ss_pred CCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEec-----------hHHHHHhh-
Q 006577 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI-----------NAISYIIH- 521 (640)
Q Consensus 454 dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D-----------sAv~~iM~- 521 (640)
...+++|-|.+..+..++..+.+.| -+|++.+ |.+.|... .+...|+.+..+.- ..+-..+.
T Consensus 82 ~~~v~~~~g~~~a~~~~~~~l~~~g--d~vl~~~--~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~ 155 (383)
T 3kax_A 82 KEWIVFSAGIVPALSTSIQAFTKEN--ESVLVQP--PIYPPFFE--MVTTNNRQLCVSPLQKQNDTYAIDFEHLEKQFQQ 155 (383)
T ss_dssp GGGEEEESCHHHHHHHHHHHHCCTT--CEEEECS--SCCHHHHH--HHHHTTCEEEECCCEEETTEEECCHHHHHHHHTT
T ss_pred hhhEEEcCCHHHHHHHHHHHhCCCC--CEEEEcC--CCcHHHHH--HHHHcCCEEEeccceecCCcEEEcHHHHHHHhCc
Confidence 3467777776666666666664444 3455543 66666443 34456776665541 22333333
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 522 ~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
++..|++ ...--..|.++..---..++-+|++|++.+++
T Consensus 156 ~~~~v~i-~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 194 (383)
T 3kax_A 156 GVKLMLL-CSPHNPIGRVWKKEELTKLGSLCTKYNVIVVA 194 (383)
T ss_dssp TCCEEEE-ESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred CCeEEEE-eCCCCCCCcCcCHHHHHHHHHHHHHCCCEEEE
Confidence 5666665 33323344444333334455569999998887
No 58
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Probab=59.48 E-value=1.5e+02 Score=29.66 Aligned_cols=99 Identities=14% Similarity=0.192 Sum_probs=53.2
Q ss_pred CCEEEeecCcHHHHHHHHHH----HHcCCeeEEEEcCCCCCchHHHHH--HHHHhCCCceEEEec--------hHHHHHh
Q 006577 455 GDVLLTYGSSSAVEMILQHA----HELGKQFRVVIVDSRPKHEGKLLL--RRLVRKGLSCTYTHI--------NAISYII 520 (640)
Q Consensus 455 gdvILT~g~SstV~~vL~~A----~e~Gk~f~ViV~ESRP~~eG~~La--~eL~~~GI~vTlI~D--------sAv~~iM 520 (640)
..+++|.|.+..+..++..+ .+.| -+|++. .|.+.|.... ..+...|+.+..+.. ..+-..+
T Consensus 91 ~~v~~~~g~t~a~~~~~~~~~~~~~~~g--d~Vl~~--~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l 166 (420)
T 1t3i_A 91 REIVYTRNATEAINLVAYSWGMNNLKAG--DEIITT--VMEHHSNLVPWQMVAAKTGAVLKFVQLDEQESFDLEHFKTLL 166 (420)
T ss_dssp GGEEEESSHHHHHHHHHHHTHHHHCCTT--CEEEEE--TTCCGGGTHHHHHHHHHHCCEEEEECBCTTSSBCHHHHHHHC
T ss_pred CeEEEcCChHHHHHHHHHHhhhcccCCC--CEEEEC--cchhHHHHHHHHHHHHhcCcEEEEeccCCCCCcCHHHHHHhh
Confidence 45777766666666666655 2233 355554 4555554321 223346887777653 1222233
Q ss_pred h-hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 521 H-EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 521 ~-~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
. ++..|++ ..--...|.+.. --.|+-+|++|++.+++
T Consensus 167 ~~~~~~v~~-~~~~nptG~~~~---l~~i~~l~~~~~~~li~ 204 (420)
T 1t3i_A 167 SEKTKLVTV-VHISNTLGCVNP---AEEIAQLAHQAGAKVLV 204 (420)
T ss_dssp CTTEEEEEE-ESBCTTTCBBCC---HHHHHHHHHHTTCEEEE
T ss_pred CCCceEEEE-eCCcccccCcCC---HHHHHHHHHHcCCEEEE
Confidence 2 3333333 222223455554 35677789999998876
No 59
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=58.43 E-value=90 Score=30.83 Aligned_cols=97 Identities=16% Similarity=0.150 Sum_probs=55.7
Q ss_pred EEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEec--------hHHHHHh---hhccE
Q 006577 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--------NAISYII---HEVTR 525 (640)
Q Consensus 457 vILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D--------sAv~~iM---~~Vdk 525 (640)
+++|.|-+..+..++..+.+.| -+|++. .|.+.|..+...+...|+.+..+.. ..+-..+ +++..
T Consensus 74 v~~~~g~t~a~~~~~~~l~~~g--d~vl~~--~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~ 149 (386)
T 2dr1_A 74 LLVPSSGTGIMEASIRNGVSKG--GKVLVT--IIGAFGKRYKEVVESNGRKAVVLEYEPGKAVKPEDLDDALRKNPDVEA 149 (386)
T ss_dssp EEESSCHHHHHHHHHHHHSCTT--CEEEEE--ESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHCTTCCE
T ss_pred EEEeCChHHHHHHHHHHhhcCC--CeEEEE--cCCchhHHHHHHHHHhCCceEEEecCCCCCCCHHHHHHHHhcCCCCcE
Confidence 5566666666666666554333 355554 4566664444555667887776652 2233334 24555
Q ss_pred EEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 526 VFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 526 VlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
|++- ..-...|.+.. --.|+-+|++|++.+++
T Consensus 150 v~~~-~~~nptG~~~~---l~~i~~l~~~~~~~li~ 181 (386)
T 2dr1_A 150 VTIT-YNETSTGVLNP---LPELAKVAKEHDKLVFV 181 (386)
T ss_dssp EEEE-SEETTTTEECC---HHHHHHHHHHTTCEEEE
T ss_pred EEEE-eecCCcchhCC---HHHHHHHHHHcCCeEEE
Confidence 5553 33333455543 36677789999998776
No 60
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=58.36 E-value=26 Score=31.36 Aligned_cols=64 Identities=16% Similarity=0.161 Sum_probs=34.7
Q ss_pred HHHhCCCceEEEe--chHHHHHhh-----hccEEEEcceeEecCCCeec-ccchHHHHHHHhhCCCcEEEeccccc
Q 006577 500 RLVRKGLSCTYTH--INAISYIIH-----EVTRVFLGASSVLSNGTVCS-RVGTACVAMVAYGFHIPVLVCCEAYK 567 (640)
Q Consensus 500 eL~~~GI~vTlI~--DsAv~~iM~-----~VdkVlvGADaIlaNG~VvN-KiGT~~lAlaAk~~~VPVyV~aetyK 567 (640)
.|...|++++... ....-.++. ++|+||+|++.- |.+-. -.|+..-.+ .++-.+||+|+-...+
T Consensus 95 ~~~~~g~~~~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~g~---~~~~~~~~Gsva~~v-l~~a~~pVlvv~~~~~ 166 (175)
T 2gm3_A 95 KCHEIGVGCEAWIKTGDPKDVICQEVKRVRPDFLVVGSRGL---GRFQKVFVGTVSAFC-VKHAECPVMTIKRNAD 166 (175)
T ss_dssp HHHHHTCEEEEEEEESCHHHHHHHHHHHHCCSEEEEEECCC---C--------CHHHHH-HHHCSSCEEEEECCGG
T ss_pred HHHHCCCceEEEEecCCHHHHHHHHHHHhCCCEEEEeCCCC---ChhhhhhcCchHHHH-HhCCCCCEEEEcCCcC
Confidence 3455688776432 223333333 599999998753 22211 256554444 4556799999865543
No 61
>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}
Probab=57.80 E-value=15 Score=37.41 Aligned_cols=105 Identities=17% Similarity=0.155 Sum_probs=70.1
Q ss_pred CCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEcceeEe
Q 006577 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVL 534 (640)
Q Consensus 455 gdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGADaIl 534 (640)
-|+++.+-....+..++.+|.+.|.+.-|++.+.-|..+-.+|.....+.|+ .++-.|+++.+-....+.......+.
T Consensus 71 ~Dv~ii~vp~~~~~~~v~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi--~viGPNc~Gii~~~~~~~~~~~~~~~ 148 (294)
T 2yv1_A 71 ANASVIFVPAPFAKDAVFEAIDAGIELIVVITEHIPVHDTMEFVNYAEDVGV--KIIGPNTPGIASPKVGKLGIIPMEVL 148 (294)
T ss_dssp CCEEEECCCHHHHHHHHHHHHHTTCSEEEECCSCCCHHHHHHHHHHHHHHTC--EEECSSCCEEEETTTEEEECCCGGGC
T ss_pred CCEEEEccCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCC--EEEcCCCceeeccCcceeeecccCCC
Confidence 4778888888899999999999887766666666665454566666667776 45656666555544333322222233
Q ss_pred cCC--CeecccchHHHHH--HHhhCCCcEEE
Q 006577 535 SNG--TVCSRVGTACVAM--VAYGFHIPVLV 561 (640)
Q Consensus 535 aNG--~VvNKiGT~~lAl--aAk~~~VPVyV 561 (640)
.-| +++++.|++..++ .+...++.|--
T Consensus 149 ~~G~va~vSqSG~l~~~~~~~~~~~g~G~s~ 179 (294)
T 2yv1_A 149 KEGSVGMVSRSGTLTYEIAHQIKKAGFGVST 179 (294)
T ss_dssp CEEEEEEEESCSHHHHHHHHHHHHTTCCEEE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCCCeEE
Confidence 344 5789999998887 45677787753
No 62
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=57.27 E-value=20 Score=38.22 Aligned_cols=92 Identities=10% Similarity=0.102 Sum_probs=60.7
Q ss_pred CCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHH-----hhhccEEEEc
Q 006577 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYI-----IHEVTRVFLG 529 (640)
Q Consensus 455 gdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~i-----M~~VdkVlvG 529 (640)
++.|+..|+...-..+.+.+.+.| +.|+|+|..|. .+..|.+.|+++.+- |..=..+ +.+++.||+.
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~~g--~~vvvId~d~~-----~v~~~~~~g~~vi~G-Dat~~~~L~~agi~~A~~viv~ 75 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLSSG--VKMVVLDHDPD-----HIETLRKFGMKVFYG-DATRMDLLESAGAAKAEVLINA 75 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTT--CCEEEEECCHH-----HHHHHHHTTCCCEES-CTTCHHHHHHTTTTTCSEEEEC
T ss_pred CCeEEEECCCHHHHHHHHHHHHCC--CCEEEEECCHH-----HHHHHHhCCCeEEEc-CCCCHHHHHhcCCCccCEEEEC
Confidence 456888888876666666666655 56788888764 356777889987553 4333333 3468888876
Q ss_pred ceeEecCCCeecccchHHHHHHHhhCCCc--EEEec
Q 006577 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIP--VLVCC 563 (640)
Q Consensus 530 ADaIlaNG~VvNKiGT~~lAlaAk~~~VP--VyV~a 563 (640)
.+ +..-+..+++.|+.++.. +++-+
T Consensus 76 ~~---------~~~~n~~i~~~ar~~~p~~~Iiara 102 (413)
T 3l9w_A 76 ID---------DPQTNLQLTEMVKEHFPHLQIIARA 102 (413)
T ss_dssp CS---------SHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred CC---------ChHHHHHHHHHHHHhCCCCeEEEEE
Confidence 54 245567788889988754 55443
No 63
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=57.23 E-value=16 Score=37.21 Aligned_cols=89 Identities=13% Similarity=0.210 Sum_probs=55.7
Q ss_pred HHHHHHHHHh----ccCCCEEEeecCcHHHHHHHHHHHHc--CCeeEEEEcCC------CCCchHHHHHHHHHhC-CCce
Q 006577 442 RVIVKHAVTK----IRDGDVLLTYGSSSAVEMILQHAHEL--GKQFRVVIVDS------RPKHEGKLLLRRLVRK-GLSC 508 (640)
Q Consensus 442 ~~Ia~~a~~~----I~dgdvILT~g~SstV~~vL~~A~e~--Gk~f~ViV~ES------RP~~eG~~La~eL~~~-GI~v 508 (640)
+.|++.|+++ |.+|++|. .++++++..+....... .++++|+-+.. .|......|++.|.+. |+++
T Consensus 93 ~~ia~~AA~~l~~~i~~~~~ig-l~~GsT~~~~~~~L~~~~~~~~~~vv~l~ggl~~~~~~~~~~~~i~~~la~~~~~~~ 171 (315)
T 2w48_A 93 SAMGQHGALLVDRLLEPGDIIG-FSWGRAVRSLVENLPQRSQSRQVICVPIIGGPSGKLESRYHVNTLTYGAAARLKAES 171 (315)
T ss_dssp HHHHHHHHHHHHHHCCTTCEEE-ECCSHHHHHHHTTSCCCSSCCCCEEEESBCBCTTSSCGGGCHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHhCCCCCEEE-ECChHHHHHHHHhhccccCCCCcEEEEcCCCCCCCCccccCHHHHHHHHHHHHCCce
Confidence 3466666664 88888755 58888888877666432 24677777643 3444556677888775 7766
Q ss_pred EEEec-----hH-H-HHHh------------hhccEEEEcce
Q 006577 509 TYTHI-----NA-I-SYII------------HEVTRVFLGAS 531 (640)
Q Consensus 509 TlI~D-----sA-v-~~iM------------~~VdkVlvGAD 531 (640)
.++.- +. . -.++ .++|+.|+|.-
T Consensus 172 ~~l~~P~~~~~~~~~~~l~~~~~~~~~l~~~~~~DiailGIG 213 (315)
T 2w48_A 172 HLADFPALLDNPLIRNGIMQSQHFKTISSYWDSLDVALVGIG 213 (315)
T ss_dssp CCCCSBSBCSSHHHHHHHHHSHHHHHHHHHHTTCSEEEECCB
T ss_pred eEeeCCcccCCHHHHHHHHhChHHHHHHHHHhcCCEEEEccC
Confidence 54421 11 2 1112 26999999987
No 64
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=56.97 E-value=53 Score=32.66 Aligned_cols=101 Identities=9% Similarity=0.115 Sum_probs=55.9
Q ss_pred CCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEec-----------hHHHHHhh-
Q 006577 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI-----------NAISYIIH- 521 (640)
Q Consensus 454 dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D-----------sAv~~iM~- 521 (640)
...+++|-|.+..+..++..+.+.| -+|++. .|.+.+.. ..+...|..+..+.. ..+-..+.
T Consensus 85 ~~~i~~~~g~~~a~~~~~~~l~~~g--d~vl~~--~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~ 158 (391)
T 3dzz_A 85 EDWCVFASGVVPAISAMVRQFTSPG--DQILVQ--EPVYNMFY--SVIEGNGRRVISSDLIYENSKYSVNWADLEEKLAT 158 (391)
T ss_dssp GGGEEEESCHHHHHHHHHHHHSCTT--CEEEEC--SSCCHHHH--HHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTS
T ss_pred HHHEEECCCHHHHHHHHHHHhCCCC--CeEEEC--CCCcHHHH--HHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhc
Confidence 3456777666666666666654334 345543 35565533 334456766665432 23334443
Q ss_pred -hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 522 -EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 522 -~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
++..|++ ...--..|.++..----.|+-+|+.|++.+++
T Consensus 159 ~~~~~v~i-~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~ 198 (391)
T 3dzz_A 159 PSVRMMVF-CNPHNPIGYAWSEEEVKRIAELCAKHQVLLIS 198 (391)
T ss_dssp TTEEEEEE-ESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred cCceEEEE-ECCCCCCCcccCHHHHHHHHHHHHHCCCEEEE
Confidence 4445544 22333345555444455667789999998887
No 65
>2nvv_A Acetyl-COA hydrolase/transferase family protein; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Porphyromonas gingivalis}
Probab=56.80 E-value=82 Score=34.75 Aligned_cols=96 Identities=17% Similarity=0.212 Sum_probs=56.9
Q ss_pred HHHHHhccCCCEEEeecCcH------HHHHHHHHHHH---cC--CeeEEEEc-CCCC-----------------CchHHH
Q 006577 446 KHAVTKIRDGDVLLTYGSSS------AVEMILQHAHE---LG--KQFRVVIV-DSRP-----------------KHEGKL 496 (640)
Q Consensus 446 ~~a~~~I~dgdvILT~g~Ss------tV~~vL~~A~e---~G--k~f~ViV~-ESRP-----------------~~eG~~ 496 (640)
+.|+.+|+||++|...++.. .+..+.+.+.+ .| .+++++.. -..| ++.|..
T Consensus 9 eEAv~~IkdGdtV~~gGf~~~G~P~~Li~AL~~r~~~~~~~g~~~~Ltl~~~~s~g~~~~~~l~~~g~v~~~~~~~~~~~ 88 (506)
T 2nvv_A 9 EEAAEFVHHNDNVGFSGFTPAGNPKVVPAAIAKRAIAAHEKGNPFKIGMFTGASTGARLDGVLAQADAVKFRTPYQSNKD 88 (506)
T ss_dssp HHHHTTCCTTCEEEECCSSSTTCCCSHHHHHHHHHHHHHTTTCCCCEEEECSSCCCTTTHHHHHHTTCEEEEESCCCCHH
T ss_pred HHHHhhCCCCCEEEECCCCCCCCHHHHHHHHHHhHHhhccccCCceEEEEEecCCCcchhHHhccCCceEEEeeeCCCHH
Confidence 34567899999999988752 34445555443 33 24555542 2222 223333
Q ss_pred HHHHHHhCC-CceEEEechHHHHHhh-----hccEEEEcceeEecCCCeecc
Q 006577 497 LLRRLVRKG-LSCTYTHINAISYIIH-----EVTRVFLGASSVLSNGTVCSR 542 (640)
Q Consensus 497 La~eL~~~G-I~vTlI~DsAv~~iM~-----~VdkVlvGADaIlaNG~VvNK 542 (640)
+ +++.+.| ++.+-+..+.+..++. ++|..|+-|...-.+|.+.-.
T Consensus 89 ~-r~~i~~G~i~~~P~~ls~v~~~l~~~~l~~~DVAlI~as~aDe~Gnls~~ 139 (506)
T 2nvv_A 89 L-RNLINNGSTSYFDLHLSTLAQDLRYGFYGKVDVAIIEVADVTEDGKILPT 139 (506)
T ss_dssp H-HHHHHTTSSEECCCCGGGHHHHHHTTSSCCCCEEEEEESEECTTSEEECC
T ss_pred H-HHHHHcCCCeEeCCCcccHHHHHHcCCcCCCCEEEEEecccCCCceEEEe
Confidence 3 3334444 4433344555554443 489999999999999987654
No 66
>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*
Probab=56.32 E-value=1.5e+02 Score=30.61 Aligned_cols=108 Identities=13% Similarity=0.050 Sum_probs=68.8
Q ss_pred HHHHHHHhccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCC------Cc------------hHHHHHHHHHhC-
Q 006577 444 IVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRP------KH------------EGKLLLRRLVRK- 504 (640)
Q Consensus 444 Ia~~a~~~I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP------~~------------eG~~La~eL~~~- 504 (640)
++..+...+. +..||..|..++--.++..+...|.. ++.++|... .. --..++..|.+.
T Consensus 26 ~G~~~q~~L~-~~~VlivG~GGlG~~ia~~La~~Gvg-~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~ln 103 (346)
T 1y8q_A 26 WGLEAQKRLR-ASRVLLVGLKGLGAEIAKNLILAGVK-GLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLN 103 (346)
T ss_dssp HCHHHHHHHH-TCEEEEECCSHHHHHHHHHHHHHTCS-EEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTC
T ss_pred hCHHHHHHHh-CCeEEEECCCHHHHHHHHHHHHcCCC-EEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhHC
Confidence 5566666666 46888999988877777777777854 333333211 11 123345777775
Q ss_pred -CCceEEEechH---HHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEe
Q 006577 505 -GLSCTYTHINA---ISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (640)
Q Consensus 505 -GI~vTlI~DsA---v~~iM~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~ 562 (640)
++.++.+...- ...++...|.||.+.|.+ ---+.+.-.|+.+++|++.+
T Consensus 104 p~v~v~~~~~~~~~~~~~~~~~~dvVv~~~d~~---------~~r~~ln~~~~~~~ip~i~~ 156 (346)
T 1y8q_A 104 PMVDVKVDTEDIEKKPESFFTQFDAVCLTCCSR---------DVIVKVDQICHKNSIKFFTG 156 (346)
T ss_dssp TTSEEEEECSCGGGCCHHHHTTCSEEEEESCCH---------HHHHHHHHHHHHTTCEEEEE
T ss_pred CCeEEEEEecccCcchHHHhcCCCEEEEcCCCH---------HHHHHHHHHHHHcCCCEEEE
Confidence 56677665421 345677899998776543 22345667889999999875
No 67
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=56.14 E-value=1.3e+02 Score=30.33 Aligned_cols=102 Identities=18% Similarity=0.208 Sum_probs=56.0
Q ss_pred CCEEEeecCcHHHHHHHHHHHH--cCCeeEEEEcCCCCCchHHHHH-HHHHhCCCceEEEech--------HHHHHhhhc
Q 006577 455 GDVLLTYGSSSAVEMILQHAHE--LGKQFRVVIVDSRPKHEGKLLL-RRLVRKGLSCTYTHIN--------AISYIIHEV 523 (640)
Q Consensus 455 gdvILT~g~SstV~~vL~~A~e--~Gk~f~ViV~ESRP~~eG~~La-~eL~~~GI~vTlI~Ds--------Av~~iM~~V 523 (640)
..+++|.|.+..+..+|+.+.+ .+..-+|++. .|.+.+...+ ..+...|+.+.++... .+-..+.+=
T Consensus 86 ~~v~~~~ggt~a~~~a~~~l~~~~~~~gd~Vl~~--~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~ 163 (423)
T 3lvm_A 86 REIVFTSGATESDNLAIKGAANFYQKKGKHIITS--KTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMRDD 163 (423)
T ss_dssp GGEEEESSHHHHHHHHHHHHHHHHTTTCCEEEEE--TTSCHHHHHHHHHHHHTTCEEEEECCCTTSCCCHHHHHHHCCTT
T ss_pred CeEEEeCChHHHHHHHHHHHHHhhccCCCEEEEC--CccchHHHHHHHHHHHcCCEEEEeccCCCCccCHHHHHHhcCCC
Confidence 3677777766666666655543 1223355554 4555554333 4556678888887632 223333322
Q ss_pred cEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 524 TRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 524 dkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
.++|+-...-...|.+.. --.|+-+|+.|++.+++
T Consensus 164 ~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~ 198 (423)
T 3lvm_A 164 TILVSIMHVNNEIGVVQD---IAAIGEMCRARGIIYHV 198 (423)
T ss_dssp EEEEECCSBCTTTCBBCC---HHHHHHHHHHHTCEEEE
T ss_pred cEEEEEeCCCCCCccccC---HHHHHHHHHHcCCEEEE
Confidence 234432222233455554 34577789999998876
No 68
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2
Probab=56.13 E-value=33 Score=33.33 Aligned_cols=99 Identities=10% Similarity=0.093 Sum_probs=59.5
Q ss_pred CCEEEeecCcHHHHH-HHHHHHHcCCeeEEEEcCCCCCc----hHHHHHHHHHhCCCceEEEe--c-hHHHHHhhhccEE
Q 006577 455 GDVLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKH----EGKLLLRRLVRKGLSCTYTH--I-NAISYIIHEVTRV 526 (640)
Q Consensus 455 gdvILT~g~SstV~~-vL~~A~e~Gk~f~ViV~ESRP~~----eG~~La~eL~~~GI~vTlI~--D-sAv~~iM~~VdkV 526 (640)
+.+||..|-++.+=. +++.+.++| ++|+++.-++.. +-......|...|+.+...- | .++..+++.+|.|
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g--~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~v 81 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLG--HPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVV 81 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTT--CCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCC--CCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHcCCCEE
Confidence 356888888765533 445555666 566665433321 22233456666776543321 2 3566677777777
Q ss_pred EEcceeEecCCCeecccchHHHHHHHhhCC-CcEEEe
Q 006577 527 FLGASSVLSNGTVCSRVGTACVAMVAYGFH-IPVLVC 562 (640)
Q Consensus 527 lvGADaIlaNG~VvNKiGT~~lAlaAk~~~-VPVyV~ 562 (640)
|.-|. ..+-.|+..++-+|+..+ ++-+|.
T Consensus 82 i~~a~-------~~~~~~~~~l~~aa~~~g~v~~~v~ 111 (308)
T 1qyc_A 82 ISTVG-------SLQIESQVNIIKAIKEVGTVKRFFP 111 (308)
T ss_dssp EECCC-------GGGSGGGHHHHHHHHHHCCCSEEEC
T ss_pred EECCc-------chhhhhHHHHHHHHHhcCCCceEee
Confidence 65542 334567888888888888 988874
No 69
>2g39_A Acetyl-COA hydrolase; coenzyme A transferase, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: c.124.1.2 c.124.1.2
Probab=56.09 E-value=1.1e+02 Score=33.53 Aligned_cols=94 Identities=13% Similarity=0.163 Sum_probs=53.8
Q ss_pred HHHHhccCCCEEEeecCc------HHHHHHHHHHHHcCCeeEEEEc-CCCCCc-----------------hHHHHHHHHH
Q 006577 447 HAVTKIRDGDVLLTYGSS------SAVEMILQHAHELGKQFRVVIV-DSRPKH-----------------EGKLLLRRLV 502 (640)
Q Consensus 447 ~a~~~I~dgdvILT~g~S------stV~~vL~~A~e~Gk~f~ViV~-ESRP~~-----------------eG~~La~eL~ 502 (640)
.|+.+|+||++|...++. ..+..+.+.+.+.+.+++++.. ...|.. .|.. .+++.
T Consensus 20 EAv~~IkdGdtV~~gGf~~~G~P~~Li~AL~~r~~~~dl~Ltl~~~~~~g~~~~~~l~~~g~v~~~~~~~~~~~-~r~~i 98 (497)
T 2g39_A 20 EAADLIQDGMTVGMSGFTRAGEAKAVPQALAMRAKERPLRISLMTGASLGNDLDKQLTEAGVLARRMPFQVDST-LRKAI 98 (497)
T ss_dssp HHHTTCCTTCEEEECCBTTBSCCCHHHHHHHHHHHHSCCCEEEECSSCCCTTHHHHHHHTTCEEEEESCCCCHH-HHHHH
T ss_pred HHHhhCCCCCEEEECCCCCCCCHHHHHHHHHHhhhcCCceEEEEecccccccchHHHhcCCceEEEEeeCCCHH-HHHHH
Confidence 456789999999998875 2234444443322223555542 333332 2222 23444
Q ss_pred hCCCceEEEe--chHHHHHhh-----hccEEEEcceeEecCCCeecc
Q 006577 503 RKGLSCTYTH--INAISYIIH-----EVTRVFLGASSVLSNGTVCSR 542 (640)
Q Consensus 503 ~~GI~vTlI~--DsAv~~iM~-----~VdkVlvGADaIlaNG~VvNK 542 (640)
+.|- +.|++ .+.+..++. ++|..|+-|...-.+|.+.-.
T Consensus 99 ~~G~-v~fvP~~ls~~~~~l~~~~l~~~DVAlI~as~aDe~Gnls~~ 144 (497)
T 2g39_A 99 NAGE-VMFIDQHLSETVEQLRNHQLKLPDIAVIEAAAITEQGHIVPT 144 (497)
T ss_dssp HTTS-SEECCCCTTTHHHHHHTTSSCCCSEEEEEESEECTTSCEECC
T ss_pred HcCC-CeEECCccccHHHHHHcCCcCCCCEEEEEecccCCCceEEEe
Confidence 4453 33332 343443433 489999999999999987654
No 70
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=56.07 E-value=1.6e+02 Score=28.95 Aligned_cols=99 Identities=15% Similarity=0.235 Sum_probs=55.5
Q ss_pred CCEEEeecCcHHHHHHHHHHH----HcCCeeEEEEcCCCCCchHHHH-HHHHHhCCCceEEEec--------hHHHHHhh
Q 006577 455 GDVLLTYGSSSAVEMILQHAH----ELGKQFRVVIVDSRPKHEGKLL-LRRLVRKGLSCTYTHI--------NAISYIIH 521 (640)
Q Consensus 455 gdvILT~g~SstV~~vL~~A~----e~Gk~f~ViV~ESRP~~eG~~L-a~eL~~~GI~vTlI~D--------sAv~~iM~ 521 (640)
..+++|-|.+..+..++..+. +.| -+|++. .|.+.+... +..+...|+.+..+.. ..+-..+.
T Consensus 62 ~~v~~~~g~t~a~~~~~~~~~~~~~~~g--d~vl~~--~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~ 137 (384)
T 1eg5_A 62 SEIFFTSCATESINWILKTVAETFEKRK--RTIITT--PIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVD 137 (384)
T ss_dssp GGEEEESCHHHHHHHHHHHHHHHTTTTC--CEEEEC--TTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCC
T ss_pred CeEEEECCHHHHHHHHHHhhhhhccCCC--CEEEEC--CCCchHHHHHHHHHHhcCCEEEEEccCCCCccCHHHHHHHhC
Confidence 467777666666666666654 234 355553 456666533 3555667888777652 12222232
Q ss_pred -hccEEEEcceeEecCCCeecccchHHHHHHHhhCC--CcEEE
Q 006577 522 -EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFH--IPVLV 561 (640)
Q Consensus 522 -~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~--VPVyV 561 (640)
++..|++ ..--...|.++. --.|+-+|+.|+ +.+++
T Consensus 138 ~~~~~v~~-~~~~nptG~~~~---~~~i~~l~~~~~~~~~li~ 176 (384)
T 1eg5_A 138 EDTFLVSI-MAANNEVGTIQP---VEDVTRIVKKKNKETLVHV 176 (384)
T ss_dssp TTEEEEEE-ESBCTTTCBBCC---HHHHHHHHHHHCTTCEEEE
T ss_pred CCCeEEEE-ECCCCCcccccC---HHHHHHHHHhcCCceEEEE
Confidence 3334443 232233466655 256777889999 76665
No 71
>3cwc_A Putative glycerate kinase 2; structural genomics, center for structural genomics of infec diseases, csgid, IDP122, transferase; 2.23A {Salmonella typhimurium LT2}
Probab=55.80 E-value=9 Score=41.15 Aligned_cols=50 Identities=14% Similarity=0.191 Sum_probs=34.8
Q ss_pred HHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEeccccc
Q 006577 516 ISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYK 567 (640)
Q Consensus 516 v~~iM~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~aetyK 567 (640)
.-..++.+|+||.|==++ |.....----..+|-.||.|+|||+++|.+..
T Consensus 281 l~~~l~~ADLVITGEG~~--D~Qtl~GK~p~gVa~~A~~~~vPviaiaG~~~ 330 (383)
T 3cwc_A 281 LEACLADADLVITGEGRI--DSQTIHGKVPIGVANIAKRYNKPVIGIAGSLT 330 (383)
T ss_dssp HHHHHHHCSEEEECCEES--CC----CHHHHHHHHHHHHTTCCEEEEEEECC
T ss_pred hHhhhcCCCEEEECCCCC--cCcCCCCcHHHHHHHHHHHhCCCEEEEeCCCC
Confidence 345667899999997555 22233323346678899999999999998863
No 72
>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1
Probab=55.73 E-value=16 Score=37.07 Aligned_cols=106 Identities=17% Similarity=0.134 Sum_probs=72.0
Q ss_pred CCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEcceeE
Q 006577 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSV 533 (640)
Q Consensus 454 dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGADaI 533 (640)
+-|+++.+-....+..++.+|.+.|.+.-|++.+.-|..+-.++.....+.|+ .++-.|+++.+-....+.......+
T Consensus 64 ~~Dv~Ii~vp~~~~~~~~~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~a~~~gi--~vigPNc~Gii~~~~~~~~~~~~~~ 141 (288)
T 1oi7_A 64 EVDASIIFVPAPAAADAALEAAHAGIPLIVLITEGIPTLDMVRAVEEIKALGS--RLIGGNCPGIISAEETKIGIMPGHV 141 (288)
T ss_dssp CCSEEEECCCHHHHHHHHHHHHHTTCSEEEECCSCCCHHHHHHHHHHHHHHTC--EEEESSSCEEEETTTEEEESSCGGG
T ss_pred CCCEEEEecCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCC--EEEeCCCCeEEcCCCceeEEcccCC
Confidence 34778888888899999999999887766667776665444566666666776 4666676666655443333322333
Q ss_pred ecCC--CeecccchHHHHHH--HhhCCCcEEE
Q 006577 534 LSNG--TVCSRVGTACVAMV--AYGFHIPVLV 561 (640)
Q Consensus 534 laNG--~VvNKiGT~~lAla--Ak~~~VPVyV 561 (640)
..-| +++++.||+..+++ +...++.|--
T Consensus 142 ~~~G~va~vsqSG~l~~~~~~~~~~~g~G~s~ 173 (288)
T 1oi7_A 142 FKRGRVGIISRSGTLTYEAAAALSQAGLGTTT 173 (288)
T ss_dssp CCEEEEEEEESCHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCCCEEEEECCHHHHHHHHHHHHhCCCCEEE
Confidence 3344 57899999988875 6677787753
No 73
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=55.72 E-value=28 Score=32.33 Aligned_cols=102 Identities=13% Similarity=0.067 Sum_probs=59.4
Q ss_pred CEEEeecCcHHHHHH-HHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEE---EechHHHHHhhhccEEEEcce
Q 006577 456 DVLLTYGSSSAVEMI-LQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTY---THINAISYIIHEVTRVFLGAS 531 (640)
Q Consensus 456 dvILT~g~SstV~~v-L~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTl---I~DsAv~~iM~~VdkVlvGAD 531 (640)
.+||..|-++.+-.. ++.+.++| .+|+++.-++...- .+ ..++.+.. .....+..+++++|.||--|-
T Consensus 5 ~~ilItGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~-----~~-~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~ 76 (227)
T 3dhn_A 5 KKIVLIGASGFVGSALLNEALNRG--FEVTAVVRHPEKIK-----IE-NEHLKVKKADVSSLDEVCEVCKGADAVISAFN 76 (227)
T ss_dssp CEEEEETCCHHHHHHHHHHHHTTT--CEEEEECSCGGGCC-----CC-CTTEEEECCCTTCHHHHHHHHTTCSEEEECCC
T ss_pred CEEEEEcCCchHHHHHHHHHHHCC--CEEEEEEcCcccch-----hc-cCceEEEEecCCCHHHHHHHhcCCCEEEEeCc
Confidence 478999988877554 45555555 67887765543210 00 12222211 112346667778998887763
Q ss_pred eEecCCC--eecccchHHHHHHHhhCCCcEEEeccc
Q 006577 532 SVLSNGT--VCSRVGTACVAMVAYGFHIPVLVCCEA 565 (640)
Q Consensus 532 aIlaNG~--VvNKiGT~~lAlaAk~~~VPVyV~aet 565 (640)
....+-. -.|-.|+..+.-+|+..++.-+|...+
T Consensus 77 ~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss 112 (227)
T 3dhn_A 77 PGWNNPDIYDETIKVYLTIIDGVKKAGVNRFLMVGG 112 (227)
T ss_dssp C------CCSHHHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 3322211 127889999999999999876665444
No 74
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=55.46 E-value=37 Score=28.82 Aligned_cols=60 Identities=13% Similarity=0.092 Sum_probs=33.9
Q ss_pred HHHHhCCCceEEEe--chH---HHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEe
Q 006577 499 RRLVRKGLSCTYTH--INA---ISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (640)
Q Consensus 499 ~eL~~~GI~vTlI~--DsA---v~~iM~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~ 562 (640)
..+.+.|++++... ... +..+.+++|+|++|+..- |.+-...|+..-. +.++-.+||+|+
T Consensus 73 ~~~~~~g~~~~~~v~~g~~~~~I~~~a~~~dliV~G~~~~---~~~~~~~Gs~~~~-vl~~~~~pVlvv 137 (138)
T 3idf_A 73 TFFTEKGINPFVVIKEGEPVEMVLEEAKDYNLLIIGSSEN---SFLNKIFASHQDD-FIQKAPIPVLIV 137 (138)
T ss_dssp HHHHTTTCCCEEEEEESCHHHHHHHHHTTCSEEEEECCTT---STTSSCCCCTTCH-HHHHCSSCEEEE
T ss_pred HHHHHCCCCeEEEEecCChHHHHHHHHhcCCEEEEeCCCc---chHHHHhCcHHHH-HHhcCCCCEEEe
Confidence 34555788875432 222 222333899999998742 2222222544333 345667999986
No 75
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}
Probab=55.20 E-value=36 Score=33.40 Aligned_cols=98 Identities=8% Similarity=0.091 Sum_probs=58.2
Q ss_pred CEEEeecCcHHHH-HHHHHHHHcCCeeEEEEcCCCC-C---chHHHHHHHHHhCCCceEEEe--c-hHHHHHhhhccEEE
Q 006577 456 DVLLTYGSSSAVE-MILQHAHELGKQFRVVIVDSRP-K---HEGKLLLRRLVRKGLSCTYTH--I-NAISYIIHEVTRVF 527 (640)
Q Consensus 456 dvILT~g~SstV~-~vL~~A~e~Gk~f~ViV~ESRP-~---~eG~~La~eL~~~GI~vTlI~--D-sAv~~iM~~VdkVl 527 (640)
.+||..|-++.+- .+++.+.++| ++|+++.-++ . .+-......|...|+.+...- | .++..+++.+|.||
T Consensus 5 ~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a~~~~d~vi 82 (321)
T 3c1o_A 5 EKIIIYGGTGYIGKFMVRASLSFS--HPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVLKQVDIVI 82 (321)
T ss_dssp CCEEEETTTSTTHHHHHHHHHHTT--CCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred cEEEEEcCCchhHHHHHHHHHhCC--CcEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHHHcCCCEEE
Confidence 4688888776543 3445555556 4566654443 1 122233345666776554322 2 35667777777776
Q ss_pred EcceeEecCCCeecccchHHHHHHHhhCC-CcEEEe
Q 006577 528 LGASSVLSNGTVCSRVGTACVAMVAYGFH-IPVLVC 562 (640)
Q Consensus 528 vGADaIlaNG~VvNKiGT~~lAlaAk~~~-VPVyV~ 562 (640)
.-|- ...-.++..+.-+|+..+ |.-+|.
T Consensus 83 ~~a~-------~~~~~~~~~l~~aa~~~g~v~~~v~ 111 (321)
T 3c1o_A 83 SALP-------FPMISSQIHIINAIKAAGNIKRFLP 111 (321)
T ss_dssp ECCC-------GGGSGGGHHHHHHHHHHCCCCEEEC
T ss_pred ECCC-------ccchhhHHHHHHHHHHhCCccEEec
Confidence 5442 223567888888888888 988874
No 76
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=55.11 E-value=81 Score=27.20 Aligned_cols=90 Identities=13% Similarity=0.095 Sum_probs=53.4
Q ss_pred CCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHH-----hhhccEEEEc
Q 006577 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYI-----IHEVTRVFLG 529 (640)
Q Consensus 455 gdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~i-----M~~VdkVlvG 529 (640)
+..|+..|+...-..+.+.+.++| ++|+++|..|. -+..+.+.|+.+.+. |..-... +.++|.||+.
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~g--~~V~~id~~~~-----~~~~~~~~~~~~~~g-d~~~~~~l~~~~~~~~d~vi~~ 77 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAAG--KKVLAVDKSKE-----KIELLEDEGFDAVIA-DPTDESFYRSLDLEGVSAVLIT 77 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTT--CCEEEEESCHH-----HHHHHHHTTCEEEEC-CTTCHHHHHHSCCTTCSEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC--CeEEEEECCHH-----HHHHHHHCCCcEEEC-CCCCHHHHHhCCcccCCEEEEe
Confidence 456888888765455556666655 46777776542 345666778765443 3332222 2467777765
Q ss_pred ceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 530 ADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
.. +.-....++..|+..+++.++
T Consensus 78 ~~---------~~~~n~~~~~~a~~~~~~~ii 100 (141)
T 3llv_A 78 GS---------DDEFNLKILKALRSVSDVYAI 100 (141)
T ss_dssp CS---------CHHHHHHHHHHHHHHCCCCEE
T ss_pred cC---------CHHHHHHHHHHHHHhCCceEE
Confidence 43 223346677888887755444
No 77
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=55.03 E-value=32 Score=33.68 Aligned_cols=101 Identities=13% Similarity=0.092 Sum_probs=56.2
Q ss_pred CCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEech-------HHHHHhhh-----
Q 006577 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN-------AISYIIHE----- 522 (640)
Q Consensus 455 gdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds-------Av~~iM~~----- 522 (640)
..+++|.|-+..+..++..+.+.| -+|++. .|.+.+...+..+...|+++..+... .+-..+.+
T Consensus 67 ~~v~~~~g~t~a~~~~~~~~~~~g--d~vl~~--~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~d~~~l~~~l~~~~~~~ 142 (359)
T 1svv_A 67 ADVHFISGGTQTNLIACSLALRPW--EAVIAT--QLGHISTHETGAIEATGHKVVTAPCPDGKLRVADIESALHENRSEH 142 (359)
T ss_dssp SEEEEESCHHHHHHHHHHHHCCTT--EEEEEE--TTSHHHHSSTTHHHHTTCCEEEECCTTSCCCHHHHHHHHHHSCSTT
T ss_pred ccEEEeCCchHHHHHHHHHHhCCC--CEEEEc--ccchHHHHHHHHHhcCCCeeEEEeCCCCeecHHHHHHHHHHHHhcc
Confidence 456777777777777776664433 355554 45555543321355678888887632 33333333
Q ss_pred ---ccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 523 ---VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 523 ---VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
+..|++- . ....|.++..-=--.++-+|++|++.+++
T Consensus 143 ~~~~~~v~~~-~-~~ptG~~~~~~~l~~i~~~~~~~~~~li~ 182 (359)
T 1svv_A 143 MVIPKLVYIS-N-TTEVGTQYTKQELEDISASCKEHGLYLFL 182 (359)
T ss_dssp SCEEEEEEEE-S-SCTTSCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred CCCceEEEEE-c-CCCCceecCHHHHHHHHHHHHHhCCEEEE
Confidence 3444443 2 23335555431123466688999998776
No 78
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=54.77 E-value=58 Score=32.27 Aligned_cols=102 Identities=12% Similarity=0.079 Sum_probs=55.6
Q ss_pred cCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEec------hHHHHHhh-hccE
Q 006577 453 RDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI------NAISYIIH-EVTR 525 (640)
Q Consensus 453 ~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D------sAv~~iM~-~Vdk 525 (640)
....+++|-|.+..+..+++.+.+.|. +|++.+ |.+.+... .+...|+.+..+.- ..+-..+. +...
T Consensus 80 ~~~~i~~t~g~~~a~~~~~~~~~~~gd--~vl~~~--~~~~~~~~--~~~~~g~~~~~~~~~~~~d~~~l~~~l~~~~~~ 153 (377)
T 3fdb_A 80 RPEWIFPIPDVVRGLYIAIDHFTPAQS--KVIVPT--PAYPPFFH--LLSATQREGIFIDATGGINLHDVEKGFQAGARS 153 (377)
T ss_dssp CGGGEEEESCHHHHHHHHHHHHSCTTC--CEEEEE--SCCTHHHH--HHHHHTCCEEEEECTTSCCHHHHHHHHHTTCCE
T ss_pred CHHHEEEeCChHHHHHHHHHHhcCCCC--EEEEcC--CCcHhHHH--HHHHcCCEEEEccCCCCCCHHHHHHHhccCCCE
Confidence 344677777766666666665544443 455443 55655433 34446888887753 23333343 3444
Q ss_pred EEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 526 VFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 526 VlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
|++- ..--..|.++..---..++-+|+.|++.+++
T Consensus 154 v~i~-~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 188 (377)
T 3fdb_A 154 ILLC-NPYNPLGMVFAPEWLNELCDLAHRYDARVLV 188 (377)
T ss_dssp EEEE-SSBTTTTBCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred EEEe-CCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 4432 2222234444333334466679999998887
No 79
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=54.73 E-value=53 Score=29.85 Aligned_cols=39 Identities=13% Similarity=-0.059 Sum_probs=32.1
Q ss_pred chHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEcc
Q 006577 492 HEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA 530 (640)
Q Consensus 492 ~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGA 530 (640)
.+-.++++.+.+.|+++..|+++.-+.+.+.+|.+|.-.
T Consensus 110 ~~~~~~~~~ak~~g~~vi~IT~~~~s~la~~ad~~l~~~ 148 (183)
T 2xhz_A 110 SEITALIPVLKRLHVPLICITGRPESSMARAADVHLCVK 148 (183)
T ss_dssp HHHHHHHHHHHTTTCCEEEEESCTTSHHHHHSSEEEECC
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCChhHHhCCEEEEeC
Confidence 344566788899999999999998888888899987654
No 80
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=53.92 E-value=24 Score=34.17 Aligned_cols=103 Identities=13% Similarity=0.046 Sum_probs=54.8
Q ss_pred EEeecCcHHHHHHHHHHHHcCCeeEEEEcC--CC--CC-chHHHHHHHHHhCCCceEEEe----c-hHHHHHhhhccEEE
Q 006577 458 LLTYGSSSAVEMILQHAHELGKQFRVVIVD--SR--PK-HEGKLLLRRLVRKGLSCTYTH----I-NAISYIIHEVTRVF 527 (640)
Q Consensus 458 ILT~g~SstV~~vL~~A~e~Gk~f~ViV~E--SR--P~-~eG~~La~eL~~~GI~vTlI~----D-sAv~~iM~~VdkVl 527 (640)
++-.+++..+...|..-.+.-..-+|.++. +. .. .-.....+.|.+.|+.+..+. + ......+.++|.++
T Consensus 5 l~l~s~~~~~~~~~~~f~~~~~~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~~ad~I~ 84 (206)
T 3l4e_A 5 LFLTSSFKDVVPLFTEFESNLQGKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATESLGEITTKLRKNDFIY 84 (206)
T ss_dssp EEEESCGGGCHHHHHHHSCCCTTCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHHHSSEEE
T ss_pred eEEeecccchHHHHHHHHHHcCCCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCChHHHHHHHHhCCEEE
Confidence 455566655655555442211123444444 32 11 234556688999999988873 2 22334567888887
Q ss_pred EcceeEecCCCee------cccchHHHHHHHhhCCCcEE-Eecccc
Q 006577 528 LGASSVLSNGTVC------SRVGTACVAMVAYGFHIPVL-VCCEAY 566 (640)
Q Consensus 528 vGADaIlaNG~Vv------NKiGT~~lAlaAk~~~VPVy-V~aety 566 (640)
++ .|+.. .+.|...+=.-+-..|+|++ +|+...
T Consensus 85 l~------GG~~~~l~~~L~~~gl~~~l~~~~~~G~p~~G~sAGa~ 124 (206)
T 3l4e_A 85 VT------GGNTFFLLQELKRTGADKLILEEIAAGKLYIGESAGAV 124 (206)
T ss_dssp EC------CSCHHHHHHHHHHHTHHHHHHHHHHTTCEEEEETHHHH
T ss_pred EC------CCCHHHHHHHHHHCChHHHHHHHHHcCCeEEEECHHHH
Confidence 75 34332 23333332222234599999 555554
No 81
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Probab=53.83 E-value=1.8e+02 Score=28.84 Aligned_cols=101 Identities=12% Similarity=0.179 Sum_probs=53.3
Q ss_pred CCEEEeecCcHHHHHHHHHHHH--cCCeeEEEEcCCCCCchHHHHH-HH-HHhCCCceEEEec--------hHHHHHhh-
Q 006577 455 GDVLLTYGSSSAVEMILQHAHE--LGKQFRVVIVDSRPKHEGKLLL-RR-LVRKGLSCTYTHI--------NAISYIIH- 521 (640)
Q Consensus 455 gdvILT~g~SstV~~vL~~A~e--~Gk~f~ViV~ESRP~~eG~~La-~e-L~~~GI~vTlI~D--------sAv~~iM~- 521 (640)
..+++|.|.+..+..++..+.+ .+..-+|++. .|.+.|.... .. +...|+.+..+.. ..+-..+.
T Consensus 86 ~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~vl~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~ 163 (406)
T 1kmj_A 86 EELVFVRGTTEGINLVANSWGNSNVRAGDNIIIS--QMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFDE 163 (406)
T ss_dssp GGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEE--TTCCGGGTHHHHHHHHHHTCEEEEECBCTTSCBCGGGHHHHCCT
T ss_pred CeEEEeCChhHHHHHHHHHhhhhcCCCCCEEEEe--cccchHHHHHHHHHHHhCCCEEEEEecCCCCCcCHHHHHHHhcc
Confidence 4577777766666666665521 1223356665 3444443222 22 3345887777652 23333333
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 522 ~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
++..|++ ...-...|.+.. --.|+-+|++|++.+++
T Consensus 164 ~~~~v~~-~~~~nptG~~~~---l~~i~~l~~~~~~~li~ 199 (406)
T 1kmj_A 164 KTRLLAI-THVSNVLGTENP---LAEMITLAHQHGAKVLV 199 (406)
T ss_dssp TEEEEEE-ESBCTTTCCBCC---HHHHHHHHHHTTCEEEE
T ss_pred CCeEEEE-eCCCccccCcCC---HHHHHHHHHHcCCEEEE
Confidence 3333333 222223365555 45677789999998776
No 82
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=53.76 E-value=1.6e+02 Score=29.49 Aligned_cols=89 Identities=18% Similarity=0.089 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEech--------HHHHHhh--hccEEEEcceeEe
Q 006577 465 SAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN--------AISYIIH--EVTRVFLGASSVL 534 (640)
Q Consensus 465 stV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds--------Av~~iM~--~VdkVlvGADaIl 534 (640)
..+..++..+.+.| -+|++.+ |.+-|..+...+...|+.+..+... .+-..+. ++..|++- .--.
T Consensus 73 ~al~~~~~~l~~~g--d~Vl~~~--~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~-~~~n 147 (416)
T 3isl_A 73 AGIEAVLASVIEPE--DDVLIPI--YGRFGYLLTEIAERYGANVHMLECEWGTVFDPEDIIREIKKVKPKIVAMV-HGET 147 (416)
T ss_dssp HHHHHHHHHHCCTT--CEEEEEE--SSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEE-SEET
T ss_pred HHHHHHHHHhcCCC--CEEEEec--CCcccHHHHHHHHhcCCeeEEEecCCCCCCCHHHHHHHHhhCCCcEEEEE-ccCC
Confidence 44444555443333 3566654 5555544556677789888877632 3333443 45444433 3333
Q ss_pred cCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 535 SNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 535 aNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
..|.+.. --.|+-+|++|++.+++
T Consensus 148 ptG~~~~---l~~i~~l~~~~~~~li~ 171 (416)
T 3isl_A 148 STGRIHP---LKAIGEACRTEDALFIV 171 (416)
T ss_dssp TTTEECC---CHHHHHHHHHTTCEEEE
T ss_pred CCceecC---HHHHHHHHHHcCCEEEE
Confidence 3454444 35678889999998887
No 83
>2h1q_A Hypothetical protein; ZP_00559375.1, structural genomics, PSI-2, protein structure initiative; 2.01A {Desulfitobacterium hafniense dcb-2} PDB: 3l5o_A
Probab=53.54 E-value=20 Score=36.54 Aligned_cols=89 Identities=17% Similarity=0.224 Sum_probs=63.4
Q ss_pred cCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEccee
Q 006577 453 RDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASS 532 (640)
Q Consensus 453 ~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGADa 532 (640)
..|..|..+|+-..+...+. +.++|+|+|-.|. + |. +++.+.-++++++|.||+-..+
T Consensus 139 ~~g~kV~vIG~~P~i~~~l~------~~~~v~V~d~~p~-~-----------g~----~p~~~~e~ll~~aD~viiTGsT 196 (270)
T 2h1q_A 139 VKGKKVGVVGHFPHLESLLE------PICDLSILEWSPE-E-----------GD----YPLPASEFILPECDYVYITCAS 196 (270)
T ss_dssp TTTSEEEEESCCTTHHHHHT------TTSEEEEEESSCC-T-----------TC----EEGGGHHHHGGGCSEEEEETHH
T ss_pred cCCCEEEEECCCHHHHHHHh------CCCCEEEEECCCC-C-----------CC----CChHHHHHHhhcCCEEEEEeee
Confidence 35789999999866555442 3478999998887 2 32 4888999999999999998877
Q ss_pred EecCCCeecccchHHHHHHHhhCCCcEEEeccccccccc
Q 006577 533 VLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHER 571 (640)
Q Consensus 533 IlaNG~VvNKiGT~~lAlaAk~~~VPVyV~aetyKf~~~ 571 (640)
+. ||++- ..+.+ |+ ....++++.+|.-+.+.
T Consensus 197 lv-N~Ti~-----~lL~~-~~-~a~~vvl~GPS~p~~P~ 227 (270)
T 2h1q_A 197 VV-DKTLP-----RLLEL-SR-NARRITLVGPGTPLAPV 227 (270)
T ss_dssp HH-HTCHH-----HHHHH-TT-TSSEEEEESTTCCCCGG
T ss_pred ee-cCCHH-----HHHHh-Cc-cCCeEEEEecChhhhHH
Confidence 65 55432 22332 33 46689999999777664
No 84
>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0
Probab=53.33 E-value=80 Score=31.31 Aligned_cols=104 Identities=12% Similarity=-0.010 Sum_probs=60.1
Q ss_pred cCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechH-------H-HHHhhhcc
Q 006577 453 RDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA-------I-SYIIHEVT 524 (640)
Q Consensus 453 ~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsA-------v-~~iM~~Vd 524 (640)
....+++|-|.+..+..+++.+.+.+..-+|++. .|.+.+... .+...|+.+..+.... + ..+-+++.
T Consensus 81 ~~~~i~~t~g~~~al~~~~~~~~~~~~gd~vl~~--~p~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~ 156 (376)
T 3ezs_A 81 KENELISTLGSREVLFNFPSFVLFDYQNPTIAYP--NPFYQIYEG--AAKFIKAKSLLMPLTKENDFTPSLNEKELQEVD 156 (376)
T ss_dssp CGGGEEEESSSHHHHHHHHHHHTTTCSSCEEEEE--ESCCTHHHH--HHHHTTCEEEEEECCGGGTSCCCCCHHHHHHCS
T ss_pred CHHHEEECcCcHHHHHHHHHHHcCCCCCCEEEEe--cCCcHhHHH--HHHHcCCEEEEcccCCCCCcchhHHhhhccCCC
Confidence 3456888888888777777766544102355554 455555433 3456788877765221 1 12223667
Q ss_pred EEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 525 RVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 525 kVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
.|++- .--...|.++..---..++-+|++|++.+++
T Consensus 157 ~v~~~-~p~nptG~~~~~~~l~~i~~~~~~~~~~li~ 192 (376)
T 3ezs_A 157 LVILN-SPNNPTGRTLSLEELISWVKLALKHDFILIN 192 (376)
T ss_dssp EEEEC-SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred EEEEc-CCCCCcCCCCCHHHHHHHHHHHHHcCcEEEE
Confidence 77663 2223345555444344566678999998776
No 85
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=53.33 E-value=76 Score=31.61 Aligned_cols=98 Identities=17% Similarity=0.142 Sum_probs=53.0
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEec--------hHHHHHhh--hccE
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--------NAISYIIH--EVTR 525 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D--------sAv~~iM~--~Vdk 525 (640)
.+++|.|-+..+..++..+.+.| -+|++.+ |.+.|..+...+...|+.+.++.. ..+-..+. ++..
T Consensus 72 ~i~~~~g~t~a~~~~~~~~~~~g--d~vl~~~--~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~ 147 (393)
T 2huf_A 72 TFCLSASGHGGMEATLCNLLEDG--DVILIGH--TGHWGDRSADMATRYGADVRVVKSKVGQSLSLDEIRDALLIHKPSV 147 (393)
T ss_dssp EEEESSCHHHHHHHHHHHHCCTT--CEEEEEE--SSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSE
T ss_pred EEEEcCcHHHHHHHHHHHHhCCC--CEEEEEC--CCcchHHHHHHHHHcCCeeEEEeCCCCCCCCHHHHHHHHhccCCcE
Confidence 35566666666666666554334 3565554 444443333444557888777651 12223333 4555
Q ss_pred EEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 526 VFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 526 VlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
|++. ..--..|.+.. --.|+-+|++|++.+++
T Consensus 148 v~~~-~~~nptG~~~~---l~~i~~~~~~~~~~li~ 179 (393)
T 2huf_A 148 LFLT-QGDSSTGVLQG---LEGVGALCHQHNCLLIV 179 (393)
T ss_dssp EEEE-SEETTTTEECC---CTTHHHHHHHTTCEEEE
T ss_pred EEEE-ccCCCccccCC---HHHHHHHHHHcCCEEEE
Confidence 5542 22223455544 24577788999998776
No 86
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A
Probab=53.24 E-value=1.3e+02 Score=27.36 Aligned_cols=37 Identities=14% Similarity=-0.000 Sum_probs=29.2
Q ss_pred hHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEc
Q 006577 493 EGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLG 529 (640)
Q Consensus 493 eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvG 529 (640)
+-.++++.+.+.|+++..|+++.-+.+.+.+|.+|.-
T Consensus 131 ~~~~~~~~ak~~g~~vI~IT~~~~s~L~~~ad~~l~~ 167 (198)
T 2xbl_A 131 NILAAFREAKAKGMTCVGFTGNRGGEMRELCDLLLEV 167 (198)
T ss_dssp HHHHHHHHHHHTTCEEEEEECSCCCTHHHHCSEEEEC
T ss_pred HHHHHHHHHHHCCCeEEEEECCCCCcHHHhCCEEEEe
Confidence 3455668888899999999998777777789988743
No 87
>3npg_A Uncharacterized DUF364 family protein; protein with unknown function from DUF364 family, structural genomics; 2.70A {Pyrococcus horikoshii}
Probab=53.01 E-value=30 Score=34.71 Aligned_cols=96 Identities=16% Similarity=0.125 Sum_probs=65.1
Q ss_pred cCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEccee
Q 006577 453 RDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASS 532 (640)
Q Consensus 453 ~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGADa 532 (640)
..+..|..+|+-..+...|+ .+ ++|+|+|-.|.+.|. + ...|..-.++++++|.||+-..+
T Consensus 114 ~~~~kV~vIG~~p~l~~~l~-----~~-~~v~V~d~~p~~~~~---------~----~~~~~~e~~~l~~~D~v~iTGsT 174 (249)
T 3npg_A 114 DEIKRIAIIGNMPPVVRTLK-----EK-YEVYVFERNMKLWDR---------D----TYSDTLEYHILPEVDGIIASASC 174 (249)
T ss_dssp SCCSEEEEESCCHHHHHHHT-----TT-SEEEEECCSGGGCCS---------S----EECGGGHHHHGGGCSEEEEETTH
T ss_pred cCCCEEEEECCCHHHHHHHh-----cc-CCEEEEECCCcccCC---------C----CCChhHHHhhhccCCEEEEEeee
Confidence 45689999999886544442 23 899999999986442 1 23675555799999999988877
Q ss_pred EecCCCeecccchHHHHHHHhhCCCcEEEecccccccccccCC
Q 006577 533 VLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLD 575 (640)
Q Consensus 533 IlaNG~VvNKiGT~~lAlaAk~~~VPVyV~aetyKf~~~~~~d 575 (640)
+. ||++ -..+.+ |+ ....++++.+|.-+.+....+
T Consensus 175 lv-N~Ti-----~~lL~~-~~-~~~~vvl~GPS~~~~P~~~~~ 209 (249)
T 3npg_A 175 IV-NGTL-----DMILDR-AK-KAKLIVITGPTGQLLPEFLKG 209 (249)
T ss_dssp HH-HTCH-----HHHHHH-CS-SCSEEEEESGGGCSCGGGGTT
T ss_pred ec-cCCH-----HHHHHh-Cc-ccCeEEEEecCchhhHHHHhh
Confidence 65 5433 222222 22 355788899998888876543
No 88
>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A
Probab=52.71 E-value=99 Score=30.37 Aligned_cols=108 Identities=13% Similarity=0.131 Sum_probs=68.7
Q ss_pred HHHHHHHhccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCC---------CCC---------chHHHHHHHHHhC-
Q 006577 444 IVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDS---------RPK---------HEGKLLLRRLVRK- 504 (640)
Q Consensus 444 Ia~~a~~~I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ES---------RP~---------~eG~~La~eL~~~- 504 (640)
++..+.+.+. +..||..|..++-..++..+...|.. ++.++|. |-. .--..++..|.+.
T Consensus 18 ~g~~~q~~l~-~~~VlvvG~GglG~~va~~La~~Gvg-~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n 95 (251)
T 1zud_1 18 IALDGQQKLL-DSQVLIIGLGGLGTPAALYLAGAGVG-TLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLN 95 (251)
T ss_dssp THHHHHHHHH-TCEEEEECCSTTHHHHHHHHHHTTCS-EEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHC
T ss_pred cCHHHHHHHh-cCcEEEEccCHHHHHHHHHHHHcCCC-eEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHC
Confidence 4556666665 46888999887666667776677754 4444432 221 1223455677664
Q ss_pred -CCceEEEe----chHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEe
Q 006577 505 -GLSCTYTH----INAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (640)
Q Consensus 505 -GI~vTlI~----DsAv~~iM~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~ 562 (640)
++.++.+. +..+..+++++|.||...|..- --+.+.-.|+.+++|++.+
T Consensus 96 p~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~d~~~---------~r~~l~~~~~~~~~p~i~~ 149 (251)
T 1zud_1 96 PDIQLTALQQRLTGEALKDAVARADVVLDCTDNMA---------TRQEINAACVALNTPLITA 149 (251)
T ss_dssp TTSEEEEECSCCCHHHHHHHHHHCSEEEECCSSHH---------HHHHHHHHHHHTTCCEEEE
T ss_pred CCCEEEEEeccCCHHHHHHHHhcCCEEEECCCCHH---------HHHHHHHHHHHhCCCEEEE
Confidence 56666553 3345667889999988776432 2356777888899998865
No 89
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=52.38 E-value=59 Score=32.35 Aligned_cols=97 Identities=16% Similarity=0.167 Sum_probs=55.4
Q ss_pred CCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEe-c-hHHHHHhh-hccEEEEcc
Q 006577 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-I-NAISYIIH-EVTRVFLGA 530 (640)
Q Consensus 454 dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~-D-sAv~~iM~-~VdkVlvGA 530 (640)
...+++|.|.+..+..+++.+.+.| -+|++.+ |.+.|.... +...|+.+..+. | ..+-..+. ++..|++ .
T Consensus 89 ~~~v~~~~g~~~a~~~~~~~~~~~g--d~vl~~~--p~~~~~~~~--~~~~g~~~~~v~~d~~~l~~~l~~~~~~v~~-~ 161 (370)
T 2z61_A 89 PDNIIITGGSSLGLFFALSSIIDDG--DEVLIQN--PCYPCYKNF--IRFLGAKPVFCDFTVESLEEALSDKTKAIII-N 161 (370)
T ss_dssp GGGEEEESSHHHHHHHHHHHHCCTT--CEEEEES--SCCTHHHHH--HHHTTCEEEEECSSHHHHHHHCCSSEEEEEE-E
T ss_pred hhhEEECCChHHHHHHHHHHhcCCC--CEEEEeC--CCchhHHHH--HHHcCCEEEEeCCCHHHHHHhcccCceEEEE-c
Confidence 3467777777777766666654434 3555543 556554433 445788887775 2 22323332 3444544 2
Q ss_pred eeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 531 SSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 531 DaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
.---..|.++..- |+-+|++|++.+++
T Consensus 162 ~p~nptG~~~~~~----l~~~~~~~~~~li~ 188 (370)
T 2z61_A 162 SPSNPLGEVIDRE----IYEFAYENIPYIIS 188 (370)
T ss_dssp SSCTTTCCCCCHH----HHHHHHHHCSEEEE
T ss_pred CCCCCcCcccCHH----HHHHHHHcCCEEEE
Confidence 2222346666554 77788999987776
No 90
>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1
Probab=52.36 E-value=96 Score=31.38 Aligned_cols=102 Identities=12% Similarity=0.058 Sum_probs=54.4
Q ss_pred CCCEEE--eecCcHHHHHHH--HHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEec----------hHHHHH
Q 006577 454 DGDVLL--TYGSSSAVEMIL--QHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI----------NAISYI 519 (640)
Q Consensus 454 dgdvIL--T~g~SstV~~vL--~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D----------sAv~~i 519 (640)
...+++ |.|-+..+..++ ......|. +|++.+ |.+.+.. ..+...|+.+..+.. ..+-..
T Consensus 96 ~~~i~~~~t~g~~~a~~~~~~~~~~~~~gd--~Vl~~~--p~~~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~ 169 (412)
T 1yaa_A 96 EDRVISVQSLSGTGALHISAKFFSKFFPDK--LVYLSK--PTWANHM--AIFENQGLKTATYPYWANETKSLDLNGFLNA 169 (412)
T ss_dssp TTCEEEEEEEHHHHHHHHHHHHHHHHCTTC--CEEEEE--SCCTTHH--HHHHTTTCCEEEEECEETTTTEECHHHHHHH
T ss_pred cceEEEEeccchHhHHHHHHHHHHHhCCCC--EEEEeC--CCCccHH--HHHHHcCceEEEEeeecCCCCccCHHHHHHH
Confidence 346777 777776666552 33333343 455553 5555533 334456887776642 123333
Q ss_pred hhh---ccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 520 IHE---VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 520 M~~---VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
+.+ .+++++=...-...|.++..-=-..++-+|+.|++.+++
T Consensus 170 l~~~~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~ 214 (412)
T 1yaa_A 170 IQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALF 214 (412)
T ss_dssp HHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 333 255554333333345544433333567788999998776
No 91
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=52.30 E-value=14 Score=36.43 Aligned_cols=92 Identities=13% Similarity=0.083 Sum_probs=55.8
Q ss_pred CCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEcceeE
Q 006577 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSV 533 (640)
Q Consensus 454 dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGADaI 533 (640)
.|..||..|...+...-++...+.|-.+.|+ +.+...+ ...|.+.| .++++...--...+..+|+||...+.
T Consensus 30 ~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVv--ap~~~~~----l~~l~~~~-~i~~i~~~~~~~dL~~adLVIaAT~d- 101 (223)
T 3dfz_A 30 KGRSVLVVGGGTIATRRIKGFLQEGAAITVV--APTVSAE----INEWEAKG-QLRVKRKKVGEEDLLNVFFIVVATND- 101 (223)
T ss_dssp TTCCEEEECCSHHHHHHHHHHGGGCCCEEEE--CSSCCHH----HHHHHHTT-SCEEECSCCCGGGSSSCSEEEECCCC-
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEE--CCCCCHH----HHHHHHcC-CcEEEECCCCHhHhCCCCEEEECCCC-
Confidence 5789999999998888888887777655554 4332222 34454443 34555432222345578888754322
Q ss_pred ecCCCeecccchHHHHHHHhhCCCcEEEe
Q 006577 534 LSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (640)
Q Consensus 534 laNG~VvNKiGT~~lAlaAk~~~VPVyV~ 562 (640)
.-+ ...++..|+ .+|||-|+
T Consensus 102 ----~~~----N~~I~~~ak-~gi~VNvv 121 (223)
T 3dfz_A 102 ----QAV----NKFVKQHIK-NDQLVNMA 121 (223)
T ss_dssp ----THH----HHHHHHHSC-TTCEEEC-
T ss_pred ----HHH----HHHHHHHHh-CCCEEEEe
Confidence 122 245677788 99998875
No 92
>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*
Probab=51.58 E-value=47 Score=30.90 Aligned_cols=106 Identities=10% Similarity=0.039 Sum_probs=63.4
Q ss_pred CCCEEEeecCcHHHHH-HHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEE--ec-hHHHHHhhhccEEEEc
Q 006577 454 DGDVLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT--HI-NAISYIIHEVTRVFLG 529 (640)
Q Consensus 454 dgdvILT~g~SstV~~-vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI--~D-sAv~~iM~~VdkVlvG 529 (640)
.+.+||..|-++.+-. +++.+.++|...+|+++.-++. . ...| ..++.+... .| ..+..++.++|.||--
T Consensus 3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~----~-~~~~-~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~ 76 (253)
T 1xq6_A 3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQ----G-KEKI-GGEADVFIGDITDADSINPAFQGIDALVIL 76 (253)
T ss_dssp SCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHH----H-HHHT-TCCTTEEECCTTSHHHHHHHHTTCSEEEEC
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCC----c-hhhc-CCCeeEEEecCCCHHHHHHHHcCCCEEEEe
Confidence 3567888888776644 4555666643567877754431 1 1222 334443321 12 4667778899999877
Q ss_pred ceeEecC-----------CC----------eecccchHHHHHHHhhCCCcEEEeccc
Q 006577 530 ASSVLSN-----------GT----------VCSRVGTACVAMVAYGFHIPVLVCCEA 565 (640)
Q Consensus 530 ADaIlaN-----------G~----------VvNKiGT~~lAlaAk~~~VPVyV~aet 565 (640)
|-..... -. -+|-.|+..+.-+|+.+++.-+|...+
T Consensus 77 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS 133 (253)
T 1xq6_A 77 TSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGS 133 (253)
T ss_dssp CCCCCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCSEEEEEEE
T ss_pred ccccccccccccccccccchhhccccccceeeeHHHHHHHHHHHHHcCCCEEEEEcC
Confidence 6432111 10 256789999998998888876654433
No 93
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=51.47 E-value=36 Score=36.25 Aligned_cols=71 Identities=17% Similarity=0.226 Sum_probs=45.0
Q ss_pred CCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhh-ccEEEEcc
Q 006577 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHE-VTRVFLGA 530 (640)
Q Consensus 455 gdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~-VdkVlvGA 530 (640)
|..|+.+|-..+=..+-+.++++| ++|.+.|.++..+. .++..|.+.||++.+-.+.. .++.. +|.||++.
T Consensus 9 ~k~v~viG~G~sG~s~A~~l~~~G--~~V~~~D~~~~~~~-~~~~~L~~~gi~~~~g~~~~--~~~~~~~d~vv~sp 80 (451)
T 3lk7_A 9 NKKVLVLGLARSGEAAARLLAKLG--AIVTVNDGKPFDEN-PTAQSLLEEGIKVVCGSHPL--ELLDEDFCYMIKNP 80 (451)
T ss_dssp TCEEEEECCTTTHHHHHHHHHHTT--CEEEEEESSCGGGC-HHHHHHHHTTCEEEESCCCG--GGGGSCEEEEEECT
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCC--CEEEEEeCCcccCC-hHHHHHHhCCCEEEECCChH--HhhcCCCCEEEECC
Confidence 567777765433233344455555 78899999875332 34578999999887654422 24455 88887764
No 94
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}
Probab=51.26 E-value=63 Score=32.52 Aligned_cols=101 Identities=13% Similarity=0.202 Sum_probs=52.4
Q ss_pred CCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEec-------hHHHHHhh-----
Q 006577 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI-------NAISYIIH----- 521 (640)
Q Consensus 454 dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D-------sAv~~iM~----- 521 (640)
...+++|-|.+..+..++..+.+.| -+|++.+ |.+.|.. ..+...|+.+..+.. ..+-..+.
T Consensus 98 ~~~v~~t~g~t~a~~~~~~~~~~~g--d~vl~~~--p~~~~~~--~~~~~~g~~~~~v~~~~~~~d~~~l~~~l~~~~~~ 171 (407)
T 2zc0_A 98 PENIVITIGGTGALDLLGRVLIDPG--DVVITEN--PSYINTL--LAFEQLGAKIEGVPVDNDGMRVDLLEEKIKELKAK 171 (407)
T ss_dssp GGGEEEESHHHHHHHHHHHHHCCTT--CEEEEEE--SCCHHHH--HHHHTTTCEEEEEEEETTEECHHHHHHHHHHHHHT
T ss_pred cceEEEecCHHHHHHHHHHHhcCCC--CEEEEeC--CChHHHH--HHHHHcCCEEEEcccCCCCCCHHHHHHHHHhhhcc
Confidence 3457777766666666666654334 3455543 5565543 344557877776642 22333343
Q ss_pred --hccEEEEcceeEecCCCeecccch-HHHHHHHhhCCCcEEE
Q 006577 522 --EVTRVFLGASSVLSNGTVCSRVGT-ACVAMVAYGFHIPVLV 561 (640)
Q Consensus 522 --~VdkVlvGADaIlaNG~VvNKiGT-~~lAlaAk~~~VPVyV 561 (640)
++..|++-...-...|.++. ... -.|+-+|+.|++.+++
T Consensus 172 ~~~~~~v~~~~~~~nptG~~~~-~~~l~~i~~~~~~~~~~li~ 213 (407)
T 2zc0_A 172 GQKVKLIYTIPTGQNPMGVTMS-MERRKALLEIASKYDLLIIE 213 (407)
T ss_dssp TCCEEEEEECCSSCTTTCCCCC-HHHHHHHHHHHHHHTCEEEE
T ss_pred cCCceEEEECCCCCCCCCcCCC-HHHHHHHHHHHHHcCCEEEE
Confidence 23333222111112243332 211 2567788999998876
No 95
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=51.18 E-value=1.2e+02 Score=30.92 Aligned_cols=100 Identities=18% Similarity=0.111 Sum_probs=57.3
Q ss_pred CCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEec-----------hHHHHHhh--
Q 006577 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI-----------NAISYIIH-- 521 (640)
Q Consensus 455 gdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D-----------sAv~~iM~-- 521 (640)
..+++|-|.+..++.+|+.+.+ ..-+|++.+ |.+.|...+ +...|..+..+.. ..+-..+.
T Consensus 120 ~~v~~~~g~~ea~~~a~~~~~~--~gd~Vi~~~--~~y~~~~~~--~~~~g~~~~~~~~~~~~~~~~~d~~~le~~i~~~ 193 (421)
T 3l8a_A 120 EDILFIDGVVPAISIALQAFSE--KGDAVLINS--PVYYPFART--IRLNDHRLVENSLQIINGRFEIDFEQLEKDIIDN 193 (421)
T ss_dssp GGEEEESCHHHHHHHHHHHHSC--TEEEEEEEE--SCCHHHHHH--HHHTTEEEEEEECEEETTEEECCHHHHHHHHHHT
T ss_pred HHEEEcCCHHHHHHHHHHHhcC--CCCEEEECC--CCcHHHHHH--HHHCCCEEEeccccccCCCeeeCHHHHHHHhhcc
Confidence 4567776666667777766643 334566543 666664433 3345766555431 23334443
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 522 ~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
++..|++ ...--..|.++.+----.|+-+|++|++.+++
T Consensus 194 ~~~~vil-~~p~nptG~~~~~~~l~~l~~l~~~~~~~li~ 232 (421)
T 3l8a_A 194 NVKIYLL-CSPHNPGGRVWDNDDLIKIAELCKKHGVILVS 232 (421)
T ss_dssp TEEEEEE-ESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred CCeEEEE-CCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence 4555555 33333445555555555677789999998886
No 96
>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*
Probab=50.86 E-value=72 Score=34.51 Aligned_cols=112 Identities=17% Similarity=0.248 Sum_probs=71.6
Q ss_pred ccCCCEEEeecCcHHHHH-HHHHHHHcCCeeEEEEcCCCCC-c-hHHHHHHHHHhCCCceEEEe-c----hHHHHHhhhc
Q 006577 452 IRDGDVLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPK-H-EGKLLLRRLVRKGLSCTYTH-I----NAISYIIHEV 523 (640)
Q Consensus 452 I~dgdvILT~g~SstV~~-vL~~A~e~Gk~f~ViV~ESRP~-~-eG~~La~eL~~~GI~vTlI~-D----sAv~~iM~~V 523 (640)
+..+.+||..|-++.+-. +.+...++|.. +|+++.-++. . .-.++..+|.+.|..++++. | .++..++.++
T Consensus 223 ~~~~~~vLITGgtGgIG~~la~~La~~G~~-~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~i 301 (486)
T 2fr1_A 223 WKPTGTVLVTGGTGGVGGQIARWLARRGAP-HLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGI 301 (486)
T ss_dssp CCCCSEEEEETTTSHHHHHHHHHHHHHTCS-EEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTS
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHcCCC-EEEEEcCCCCCcHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHHHH
Confidence 456677888887766543 44555555643 4555543332 2 23466788888898887763 4 3566666655
Q ss_pred ------cEEEEcceeEecCCCe-------------ecccchHHHHHHHhhCCCcEEEeccc
Q 006577 524 ------TRVFLGASSVLSNGTV-------------CSRVGTACVAMVAYGFHIPVLVCCEA 565 (640)
Q Consensus 524 ------dkVlvGADaIlaNG~V-------------vNKiGT~~lAlaAk~~~VPVyV~aet 565 (640)
|.||-.|- +..+|.+ .|-.|+..+.-+++..+..++|++.+
T Consensus 302 ~~~g~ld~VIh~AG-~~~~~~l~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~~V~~SS 361 (486)
T 2fr1_A 302 GDDVPLSAVFHAAA-TLDDGTVDTLTGERIERASRAKVLGARNLHELTRELDLTAFVLFSS 361 (486)
T ss_dssp CTTSCEEEEEECCC-CCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSCCSEEEEEEE
T ss_pred HhcCCCcEEEECCc-cCCCCccccCCHHHHHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcC
Confidence 77776663 3444432 26678888888888888888887655
No 97
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=50.67 E-value=61 Score=28.79 Aligned_cols=93 Identities=16% Similarity=0.186 Sum_probs=52.8
Q ss_pred cCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHH-hCCCceEEEech---H-HHHH-hhhccEE
Q 006577 453 RDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLV-RKGLSCTYTHIN---A-ISYI-IHEVTRV 526 (640)
Q Consensus 453 ~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~-~~GI~vTlI~Ds---A-v~~i-M~~VdkV 526 (640)
..++.|+.+|....-..+...+.+.| ++|++++.++.. +..|. +.|+.+.. .|. . +... +..+|.|
T Consensus 17 ~~~~~v~IiG~G~iG~~la~~L~~~g--~~V~vid~~~~~-----~~~~~~~~g~~~~~-~d~~~~~~l~~~~~~~ad~V 88 (155)
T 2g1u_A 17 QKSKYIVIFGCGRLGSLIANLASSSG--HSVVVVDKNEYA-----FHRLNSEFSGFTVV-GDAAEFETLKECGMEKADMV 88 (155)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCGGG-----GGGSCTTCCSEEEE-SCTTSHHHHHTTTGGGCSEE
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCC--CeEEEEECCHHH-----HHHHHhcCCCcEEE-ecCCCHHHHHHcCcccCCEE
Confidence 45789999998766566666666666 478888776643 22344 45665432 221 1 1111 4578888
Q ss_pred EEcceeEecCCCeecccchHHHHHHHhh-CCCcEEEe
Q 006577 527 FLGASSVLSNGTVCSRVGTACVAMVAYG-FHIPVLVC 562 (640)
Q Consensus 527 lvGADaIlaNG~VvNKiGT~~lAlaAk~-~~VPVyV~ 562 (640)
|+.... ..-...++.+++. ++...+|+
T Consensus 89 i~~~~~---------~~~~~~~~~~~~~~~~~~~iv~ 116 (155)
T 2g1u_A 89 FAFTND---------DSTNFFISMNARYMFNVENVIA 116 (155)
T ss_dssp EECSSC---------HHHHHHHHHHHHHTSCCSEEEE
T ss_pred EEEeCC---------cHHHHHHHHHHHHHCCCCeEEE
Confidence 776532 1122445556776 66655554
No 98
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}
Probab=50.43 E-value=45 Score=34.38 Aligned_cols=98 Identities=15% Similarity=0.134 Sum_probs=53.6
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHH-HHH-HHhCCCceEEEech--HHHHHhh-hccEEEEcc
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLL-LRR-LVRKGLSCTYTHIN--AISYIIH-EVTRVFLGA 530 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~L-a~e-L~~~GI~vTlI~Ds--Av~~iM~-~VdkVlvGA 530 (640)
++|+|-+-+..+..+|..+.+.| -+|++.+ |.+.+... ... +...|+.+.++... .+-..+. ++..|++ .
T Consensus 73 ~~~~~~~gt~a~~~al~~l~~~g--d~vi~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~i~~~~~~v~~-~ 147 (412)
T 2cb1_A 73 EAVVLASGQAATFAALLALLRPG--DEVVAAK--GLFGQTIGLFGQVLSLMGVTVRYVDPEPEAVREALSAKTRAVFV-E 147 (412)
T ss_dssp EEEEESSHHHHHHHHHHTTCCTT--CEEEEET--TCCHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHCCTTEEEEEE-E
T ss_pred cEEEECCHHHHHHHHHHHHhCCC--CEEEEeC--CCchhHHHHHHHHHHHcCCEEEEECCCHHHHHHHhccCCeEEEE-e
Confidence 56776555555555555443333 3566644 55554322 222 55679998888643 2222333 3344443 2
Q ss_pred eeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 531 SSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 531 DaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
..--..|.+.. --.|+-+|++|++.+++
T Consensus 148 ~~~n~~G~~~~---l~~i~~l~~~~~~~li~ 175 (412)
T 2cb1_A 148 TVANPALLVPD---LEALATLAEEAGVALVV 175 (412)
T ss_dssp SSCTTTCCCCC---HHHHHHHHHHHTCEEEE
T ss_pred CCCCCCccccc---HHHHHHHHHHcCCEEEE
Confidence 22223455543 45677789999998886
No 99
>3cvj_A Putative phosphoheptose isomerase; rossman fold, 3-layer (ABA) sandwich, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.00A {Bacillus halodurans c-125}
Probab=50.27 E-value=1e+02 Score=29.66 Aligned_cols=42 Identities=10% Similarity=-0.144 Sum_probs=32.6
Q ss_pred CCCCchHHHHHHHHHhCCCceEEEechHHH-----------HHhhhccEEEEc
Q 006577 488 SRPKHEGKLLLRRLVRKGLSCTYTHINAIS-----------YIIHEVTRVFLG 529 (640)
Q Consensus 488 SRP~~eG~~La~eL~~~GI~vTlI~DsAv~-----------~iM~~VdkVlvG 529 (640)
|+-..+=.++++.+.+.|+++..|+++.-+ .+.+.+|.+|.-
T Consensus 118 SG~t~~~i~~~~~Ak~~G~~vI~IT~~~~s~~~~~~~~~g~~La~~aD~~l~~ 170 (243)
T 3cvj_A 118 SGRNTVPVEMAIESRNIGAKVIAMTSMKHSQKVTSRHKSGKKLYEYADVVLDN 170 (243)
T ss_dssp SCCSHHHHHHHHHHHHHTCEEEEEECHHHHHHSCCCSTTSCCGGGGCSEEEEC
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEeCCcccccccccCCCcCcHHHhCCEEEEC
Confidence 333344566678899999999999999877 777889998853
No 100
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=50.14 E-value=54 Score=27.79 Aligned_cols=92 Identities=12% Similarity=0.161 Sum_probs=50.6
Q ss_pred CCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechH----HHHH-hhhccEEEEc
Q 006577 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA----ISYI-IHEVTRVFLG 529 (640)
Q Consensus 455 gdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsA----v~~i-M~~VdkVlvG 529 (640)
+..|+.+|....-..+...+.+.|. +|++++..+. -...+.+.|+.+ +..|.. +..+ +.++|.||+.
T Consensus 6 ~~~v~I~G~G~iG~~~a~~l~~~g~--~v~~~d~~~~-----~~~~~~~~~~~~-~~~d~~~~~~l~~~~~~~~d~vi~~ 77 (144)
T 2hmt_A 6 NKQFAVIGLGRFGGSIVKELHRMGH--EVLAVDINEE-----KVNAYASYATHA-VIANATEENELLSLGIRNFEYVIVA 77 (144)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTC--CCEEEESCHH-----HHHTTTTTCSEE-EECCTTCHHHHHTTTGGGCSEEEEC
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCC--EEEEEeCCHH-----HHHHHHHhCCEE-EEeCCCCHHHHHhcCCCCCCEEEEC
Confidence 4568888886555555666666664 5666665431 233455556643 222321 1111 4578888776
Q ss_pred ceeEecCCCeecccchHHHHHHHhhCCCcEEEe
Q 006577 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (640)
Q Consensus 530 ADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~ 562 (640)
+..- .--...++..|+.++++.+++
T Consensus 78 ~~~~--------~~~~~~~~~~~~~~~~~~ii~ 102 (144)
T 2hmt_A 78 IGAN--------IQASTLTTLLLKELDIPNIWV 102 (144)
T ss_dssp CCSC--------HHHHHHHHHHHHHTTCSEEEE
T ss_pred CCCc--------hHHHHHHHHHHHHcCCCeEEE
Confidence 5421 011235677888888874443
No 101
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=49.87 E-value=1.4e+02 Score=29.24 Aligned_cols=100 Identities=16% Similarity=0.137 Sum_probs=54.7
Q ss_pred CCCEEEeecCcHHHHHHHHHHHHc-----------CCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEech--------
Q 006577 454 DGDVLLTYGSSSAVEMILQHAHEL-----------GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN-------- 514 (640)
Q Consensus 454 dgdvILT~g~SstV~~vL~~A~e~-----------Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds-------- 514 (640)
...+++|.|-+..+..++..+... +..-+|++.+ |.+.+.. ..+...|+.+..+.-.
T Consensus 86 ~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~~~~~gd~vl~~~--~~~~~~~--~~~~~~g~~~~~v~~~~~~~~d~~ 161 (397)
T 3f9t_A 86 DAYGHIVSGGTEANLMALRCIKNIWREKRRKGLSKNEHPKIIVPI--TAHFSFE--KGREMMDLEYIYAPIKEDYTIDEK 161 (397)
T ss_dssp TCEEEEESCHHHHHHHHHHHHHHHHHHHHHTTCCCCSSCEEEEET--TCCTHHH--HHHHHHTCEEEEECBCTTSSBCHH
T ss_pred CCCEEEecCcHHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEECC--cchhHHH--HHHHHcCceeEEEeeCCCCcCCHH
Confidence 345677776666666666665543 1234566543 4555533 2333348888877632
Q ss_pred HHHHHhhh--ccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 515 AISYIIHE--VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 515 Av~~iM~~--VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
.+-..+.+ ..+|++-. .-...|.+.. --.|+-+|+.|++.+++
T Consensus 162 ~l~~~i~~~~~~~v~~~~-~~nptG~~~~---l~~i~~l~~~~~~~li~ 206 (397)
T 3f9t_A 162 FVKDAVEDYDVDGIIGIA-GTTELGTIDN---IEELSKIAKENNIYIHV 206 (397)
T ss_dssp HHHHHHHHSCCCEEEEEB-SCTTTCCBCC---HHHHHHHHHHHTCEEEE
T ss_pred HHHHHHhhcCCeEEEEEC-CCCCCCCCCC---HHHHHHHHHHhCCeEEE
Confidence 23333433 44444332 2234454433 34577789999998877
No 102
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=49.83 E-value=81 Score=30.04 Aligned_cols=99 Identities=24% Similarity=0.237 Sum_probs=52.6
Q ss_pred EEEeecCcHHHHHHHHH----HHHcCCeeEEEEcCCCCCc---hHHHHHHHHHhCCCceEEEe--chHHHHHhh---hcc
Q 006577 457 VLLTYGSSSAVEMILQH----AHELGKQFRVVIVDSRPKH---EGKLLLRRLVRKGLSCTYTH--INAISYIIH---EVT 524 (640)
Q Consensus 457 vILT~g~SstV~~vL~~----A~e~Gk~f~ViV~ESRP~~---eG~~La~eL~~~GI~vTlI~--DsAv~~iM~---~Vd 524 (640)
+++-+..|..-...|.. |...|-.++|+-+...+.. .-..+...|.+.|+++++.. .+..-.++. +.|
T Consensus 157 ilv~~d~s~~~~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~g~~~~~i~~~a~~~d 236 (268)
T 3ab8_A 157 ALLGYDASESAVRALHALAPLARALGLGVRVVSVHEDPARAEAWALEAEAYLRDHGVEASALVLGGDAADHLLRLQGPGD 236 (268)
T ss_dssp EEEECCSCHHHHHHHHHHHHHHHHHTCCEEEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSCHHHHHHHHCCTTE
T ss_pred EEEEECCCHHHHHHHHHHHHhhhcCCCEEEEEEEcCcHHHHHHHHHHHHHHHHHcCCceEEEEeCCChHHHHHHHHHhCC
Confidence 34445566554444444 3334556666544332211 11234467778899887642 333333333 459
Q ss_pred EEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEe
Q 006577 525 RVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (640)
Q Consensus 525 kVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~ 562 (640)
++++|+ .+ .+- -.|+..-.+ .++-.+||+|+
T Consensus 237 liV~G~-~~--~~~---~~Gs~~~~v-l~~~~~pvlvv 267 (268)
T 3ab8_A 237 LLALGA-PV--RRL---VFGSTAERV-IRNAQGPVLTA 267 (268)
T ss_dssp EEEEEC-CC--SCC---SSCCHHHHH-HHHCSSCEEEE
T ss_pred EEEECC-cc--ccc---EeccHHHHH-HhcCCCCEEEe
Confidence 999999 11 111 235544444 45678999986
No 103
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=49.67 E-value=63 Score=27.27 Aligned_cols=89 Identities=9% Similarity=0.060 Sum_probs=48.5
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHh-CCCceEEEech---H-HHH-HhhhccEEEEc
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVR-KGLSCTYTHIN---A-ISY-IIHEVTRVFLG 529 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~-~GI~vTlI~Ds---A-v~~-iM~~VdkVlvG 529 (640)
..|+.+|....-..+...+.+.| .+|+++|.++. .+..|.+ .|+.+.. .|. . +.. .+.++|.||+.
T Consensus 5 m~i~IiG~G~iG~~~a~~L~~~g--~~v~~~d~~~~-----~~~~~~~~~~~~~~~-~d~~~~~~l~~~~~~~~d~vi~~ 76 (140)
T 1lss_A 5 MYIIIAGIGRVGYTLAKSLSEKG--HDIVLIDIDKD-----ICKKASAEIDALVIN-GDCTKIKTLEDAGIEDADMYIAV 76 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHH-----HHHHHHHHCSSEEEE-SCTTSHHHHHHTTTTTCSEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHhCC--CeEEEEECCHH-----HHHHHHHhcCcEEEE-cCCCCHHHHHHcCcccCCEEEEe
Confidence 46788888655555556666656 56777776542 2334443 3665432 222 1 111 15578999887
Q ss_pred ceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 530 ADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
...- -.| ..++.+|+.+++.-+|
T Consensus 77 ~~~~-----~~~----~~~~~~~~~~~~~~ii 99 (140)
T 1lss_A 77 TGKE-----EVN----LMSSLLAKSYGINKTI 99 (140)
T ss_dssp CSCH-----HHH----HHHHHHHHHTTCCCEE
T ss_pred eCCc-----hHH----HHHHHHHHHcCCCEEE
Confidence 5321 111 3456678888765333
No 104
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=49.64 E-value=35 Score=33.36 Aligned_cols=71 Identities=18% Similarity=0.232 Sum_probs=44.3
Q ss_pred EEEeecCcHHHHHHHHHHHHcCCeeEEEEcC-CCCCchHHHHHHHHHhCCCceEEEec----------hHHHHHhh--hc
Q 006577 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVD-SRPKHEGKLLLRRLVRKGLSCTYTHI----------NAISYIIH--EV 523 (640)
Q Consensus 457 vILT~g~SstV~~vL~~A~e~Gk~f~ViV~E-SRP~~eG~~La~eL~~~GI~vTlI~D----------sAv~~iM~--~V 523 (640)
.||.-|..+....+|....+.+..++|.++= .+|...|.+.| .+.||++.++.. ..+...++ ++
T Consensus 11 ~vl~SG~gsnl~all~~~~~~~l~~~I~~Visn~~~a~~l~~A---~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~ 87 (209)
T 4ds3_A 11 VIFISGGGSNMEALIRAAQAPGFPAEIVAVFSDKAEAGGLAKA---EAAGIATQVFKRKDFASKEAHEDAILAALDVLKP 87 (209)
T ss_dssp EEEESSCCHHHHHHHHHHTSTTCSEEEEEEEESCTTCTHHHHH---HHTTCCEEECCGGGSSSHHHHHHHHHHHHHHHCC
T ss_pred EEEEECCcHHHHHHHHHHHcCCCCcEEEEEEECCcccHHHHHH---HHcCCCEEEeCccccCCHHHHHHHHHHHHHhcCC
Confidence 5677777777776666554333345554443 37777775443 457999998752 34445555 58
Q ss_pred cEEEEcc
Q 006577 524 TRVFLGA 530 (640)
Q Consensus 524 dkVlvGA 530 (640)
|.+++.+
T Consensus 88 Dliv~ag 94 (209)
T 4ds3_A 88 DIICLAG 94 (209)
T ss_dssp SEEEESS
T ss_pred CEEEEec
Confidence 8887765
No 105
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=49.52 E-value=36 Score=30.22 Aligned_cols=60 Identities=13% Similarity=0.124 Sum_probs=34.7
Q ss_pred HHHhCCCceEE---Eec-hH---HHHHhh--hccEEEEcceeEecCCCeec-ccchHHHHHHHhhCCCcEEEec
Q 006577 500 RLVRKGLSCTY---THI-NA---ISYIIH--EVTRVFLGASSVLSNGTVCS-RVGTACVAMVAYGFHIPVLVCC 563 (640)
Q Consensus 500 eL~~~GI~vTl---I~D-sA---v~~iM~--~VdkVlvGADaIlaNG~VvN-KiGT~~lAlaAk~~~VPVyV~a 563 (640)
.|...|+++.. +.. .. +..+.+ ++|+||+|+..- +.+-. -.|+..--+ .++.++||+|+-
T Consensus 86 ~~~~~g~~~~~~~~~~~g~~~~~I~~~a~~~~~DlIV~G~~g~---~~~~~~~~Gsv~~~v-l~~~~~PVlvv~ 155 (170)
T 2dum_A 86 EVKRAFRAKNVRTIIRFGIPWDEIVKVAEEENVSLIILPSRGK---LSLSHEFLGSTVMRV-LRKTKKPVLIIK 155 (170)
T ss_dssp HHHHHTTCSEEEEEEEEECHHHHHHHHHHHTTCSEEEEESCCC---CC--TTCCCHHHHHH-HHHCSSCEEEEC
T ss_pred HHHHcCCceeeeeEEecCChHHHHHHHHHHcCCCEEEECCCCC---CccccceechHHHHH-HHhCCCCEEEEc
Confidence 44456888765 322 22 223333 799999999853 22222 256544444 455789999984
No 106
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=49.42 E-value=64 Score=32.22 Aligned_cols=98 Identities=18% Similarity=0.137 Sum_probs=56.2
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEec--------hHHHHHhh--hccE
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--------NAISYIIH--EVTR 525 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D--------sAv~~iM~--~Vdk 525 (640)
.+++|.|-+..+..++..+.+.|. +|++. .|.+.|..+...+...|+.+..+.. ..+-..+. ++..
T Consensus 87 ~v~~t~g~t~al~~~~~~~~~~gd--~Vl~~--~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~ 162 (393)
T 1vjo_A 87 TIAVSGTGTAAMEATIANAVEPGD--VVLIG--VAGYFGNRLVDMAGRYGADVRTISKPWGEVFSLEELRTALETHRPAI 162 (393)
T ss_dssp EEEESSCHHHHHHHHHHHHCCTTC--EEEEE--ESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSE
T ss_pred EEEEeCchHHHHHHHHHhccCCCC--EEEEE--cCChhHHHHHHHHHHcCCceEEEecCCCCCCCHHHHHHHHhhCCceE
Confidence 466776666666666666644443 55555 3666664444555667888777652 22333333 3555
Q ss_pred EEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 526 VFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 526 VlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
|++- .--...|.+.. --.|+-+|++|++.+++
T Consensus 163 v~~~-~~~nptG~~~~---l~~i~~l~~~~~~~li~ 194 (393)
T 1vjo_A 163 LALV-HAETSTGARQP---LEGVGELCREFGTLLLV 194 (393)
T ss_dssp EEEE-SEETTTTEECC---CTTHHHHHHHHTCEEEE
T ss_pred EEEe-ccCCCcceecc---HHHHHHHHHHcCCEEEE
Confidence 5542 22234455543 23566778889988776
No 107
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}
Probab=49.38 E-value=1.3e+02 Score=30.13 Aligned_cols=99 Identities=16% Similarity=0.248 Sum_probs=51.0
Q ss_pred CCEEEeecCcHHHHHHHHHH---HHcCCeeEEEEcCCCCCchHHHHH-HHHHh-CCCceEEEech---------HHHHHh
Q 006577 455 GDVLLTYGSSSAVEMILQHA---HELGKQFRVVIVDSRPKHEGKLLL-RRLVR-KGLSCTYTHIN---------AISYII 520 (640)
Q Consensus 455 gdvILT~g~SstV~~vL~~A---~e~Gk~f~ViV~ESRP~~eG~~La-~eL~~-~GI~vTlI~Ds---------Av~~iM 520 (640)
..+++|-|.+..+..++... ...| -+|++.+ |.+.+.... ..|.+ .|+.+.++... .+-..+
T Consensus 87 ~~v~~~~g~t~al~~~~~~l~~~~~~g--d~vi~~~--~~~~~~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~l 162 (406)
T 3cai_A 87 GGVVLGADRAVLLSLLAEASSSRAGLG--YEVIVSR--LDDEANIAPWLRAAHRYGAKVKWAEVDIETGELPTWQWESLI 162 (406)
T ss_dssp GGEEEESCHHHHHHHHHHHTGGGGBTT--CEEEEET--TSCGGGTHHHHHHHHHHBCEEEEECCCTTTCCCCGGGHHHHC
T ss_pred CeEEEeCChHHHHHHHHHHHhhccCCC--CEEEEcC--CccHHHHHHHHHHHHhcCCeEEEEecCcccCCcCHHHHHHHh
Confidence 35677766665555444433 2233 3566643 555543322 33333 58887777522 233333
Q ss_pred h-hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 521 H-EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 521 ~-~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
. ++..|++ ...-...|.+.. --.|+-+|+.+++.+++
T Consensus 163 ~~~~~~v~~-~~~~nptG~~~~---l~~i~~l~~~~~~~li~ 200 (406)
T 3cai_A 163 SKSTRLVAV-NSASGTLGGVTD---LRAMTKLVHDVGALVVV 200 (406)
T ss_dssp CTTEEEEEE-ESBCTTTCBBCC---CHHHHHHHHHTTCEEEE
T ss_pred CCCceEEEE-eCCcCCccccCC---HHHHHHHHHHcCCEEEE
Confidence 3 3333333 222223465554 25677789999998776
No 108
>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A
Probab=49.11 E-value=47 Score=32.30 Aligned_cols=108 Identities=14% Similarity=0.145 Sum_probs=61.8
Q ss_pred CCEEEeecCcHHHHH-HHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEe--c-hHHHHHhhhccEEEEcc
Q 006577 455 GDVLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH--I-NAISYIIHEVTRVFLGA 530 (640)
Q Consensus 455 gdvILT~g~SstV~~-vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~--D-sAv~~iM~~VdkVlvGA 530 (640)
+.+||..|-++.+-. +++.+.++|. .+|+++.-+|... -+..|...|+.+...- | ..+..++..+|.||.-|
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~-~~V~~~~R~~~~~---~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a 80 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLEDGT-FKVRVVTRNPRKK---AAKELRLQGAEVVQGDQDDQVIMELALNGAYATFIVT 80 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCS-SEEEEEESCTTSH---HHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECC
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCC-ceEEEEEcCCCCH---HHHHHHHCCCEEEEecCCCHHHHHHHHhcCCEEEEeC
Confidence 457888898876644 4455555552 5677665444432 1245556676543321 2 35566777888888755
Q ss_pred eeEecCCCeecccchHHHHHHHhhCCCcEEEecccc
Q 006577 531 SSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAY 566 (640)
Q Consensus 531 DaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~aety 566 (640)
...-....-.|-.++..+.-+|+..++.-+|.+.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~aa~~~gv~~iv~~S~~ 116 (299)
T 2wm3_A 81 NYWESCSQEQEVKQGKLLADLARRLGLHYVVYSGLE 116 (299)
T ss_dssp CHHHHTCHHHHHHHHHHHHHHHHHHTCSEEEECCCC
T ss_pred CCCccccchHHHHHHHHHHHHHHHcCCCEEEEEcCc
Confidence 321111111234477777777888888877765543
No 109
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=48.99 E-value=83 Score=31.37 Aligned_cols=98 Identities=16% Similarity=0.159 Sum_probs=55.0
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEec--------hHHHHHhh--hccE
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--------NAISYIIH--EVTR 525 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D--------sAv~~iM~--~Vdk 525 (640)
.+++|.|.+..+..++..+.+.|. +|++. .|.+.+..+...+...|+.+..+.. ..+-..+. ++..
T Consensus 71 ~v~~~~g~t~al~~~~~~~~~~gd--~vl~~--~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~ 146 (396)
T 2ch1_A 71 TMCVSGSAHAGMEAMLSNLLEEGD--RVLIA--VNGIWAERAVEMSERYGADVRTIEGPPDRPFSLETLARAIELHQPKC 146 (396)
T ss_dssp EEEESSCHHHHHHHHHHHHCCTTC--EEEEE--ESSHHHHHHHHHHHHTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSE
T ss_pred EEEECCcHHHHHHHHHHHhcCCCC--eEEEE--cCCcccHHHHHHHHHcCCceEEecCCCCCCCCHHHHHHHHHhCCCCE
Confidence 356666556666666665544443 45554 3556665433455667888877652 12333333 4566
Q ss_pred EEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 526 VFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 526 VlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
|++ ...--..|.++. --.|+-+|+.|++.+++
T Consensus 147 v~~-~~~~nptG~~~~---~~~i~~l~~~~~~~li~ 178 (396)
T 2ch1_A 147 LFL-THGDSSSGLLQP---LEGVGQICHQHDCLLIV 178 (396)
T ss_dssp EEE-ESEETTTTEECC---CTTHHHHHHHTTCEEEE
T ss_pred EEE-ECCCCCCceecC---HHHHHHHHHHcCCEEEE
Confidence 655 333334566555 23566788899987766
No 110
>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}
Probab=48.39 E-value=73 Score=32.66 Aligned_cols=87 Identities=17% Similarity=0.198 Sum_probs=56.5
Q ss_pred CCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHh-CCCceEEEechHHHHHhhhccEEEEccee
Q 006577 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVR-KGLSCTYTHINAISYIIHEVTRVFLGASS 532 (640)
Q Consensus 454 dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~-~GI~vTlI~DsAv~~iM~~VdkVlvGADa 532 (640)
+..+|+.+|........++...+...-.+|+|.+-. .-.+|+.+|.+ .|+++... ....++.++|.|+...-.
T Consensus 120 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~---~a~~la~~l~~~~g~~~~~~---~~~eav~~aDIVi~aT~s 193 (313)
T 3hdj_A 120 RSSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY---ASPEILERIGRRCGVPARMA---APADIAAQADIVVTATRS 193 (313)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT---CCHHHHHHHHHHHTSCEEEC---CHHHHHHHCSEEEECCCC
T ss_pred CCcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc---HHHHHHHHHHHhcCCeEEEe---CHHHHHhhCCEEEEccCC
Confidence 567899999887766666655543333466666655 44567777764 48887765 355667899999875421
Q ss_pred --------EecCCCeecccchH
Q 006577 533 --------VLSNGTVCSRVGTA 546 (640)
Q Consensus 533 --------IlaNG~VvNKiGT~ 546 (640)
.+..|..++-+|++
T Consensus 194 ~~pvl~~~~l~~G~~V~~vGs~ 215 (313)
T 3hdj_A 194 TTPLFAGQALRAGAFVGAIGSS 215 (313)
T ss_dssp SSCSSCGGGCCTTCEEEECCCS
T ss_pred CCcccCHHHcCCCcEEEECCCC
Confidence 24456677777765
No 111
>2o8n_A APOA-I binding protein; rossmann fold, protein binding; 2.00A {Mus musculus} PDB: 2dg2_A
Probab=48.36 E-value=2.3e+02 Score=28.62 Aligned_cols=121 Identities=10% Similarity=0.014 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHhccCC------CEEEeecCcH----HHHHHHHHHHHcCCeeEEEEcCCCCCchH-HHHHHHHHhCC
Q 006577 437 IILADRVIVKHAVTKIRDG------DVLLTYGSSS----AVEMILQHAHELGKQFRVVIVDSRPKHEG-KLLLRRLVRKG 505 (640)
Q Consensus 437 i~~A~~~Ia~~a~~~I~dg------dvILT~g~Ss----tV~~vL~~A~e~Gk~f~ViV~ESRP~~eG-~~La~eL~~~G 505 (640)
++.|...+++...+.+... ..|+.+|-.+ --.-+-+.+++.|.+.+||++.. +..+- +.....+.+.|
T Consensus 55 ME~AG~ava~~i~~~~~~~~~~~~~~~VlVlcG~GNNGGDGlv~AR~L~~~G~~V~V~~~~~-~~~~~~~~~~~~~~~~g 133 (265)
T 2o8n_A 55 MELAGLSCATAIAKAYPPTSMSKSPPTVLVICGPGNNGGDGLVCARHLKLFGYQPTIYYPKR-PNKPLFTGLVTQCQKMD 133 (265)
T ss_dssp HHHHHHHHHHHHHHHSCGGGSSSSSCEEEEEECSSHHHHHHHHHHHHHHHTTCEEEEECCSC-CSSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcccccccCCCCeEEEEECCCCCHHHHHHHHHHHHHCCCcEEEEEeCC-CCCHHHHHHHHHHHHcC
Confidence 4456677777777666431 4788877543 23444566677798888886644 33222 23336677789
Q ss_pred CceEE-EechHHHHHhhhccEEEEcceeEecCCCeecccchHHHHH-HHhhCCCcEEEe
Q 006577 506 LSCTY-THINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAM-VAYGFHIPVLVC 562 (640)
Q Consensus 506 I~vTl-I~DsAv~~iM~~VdkVlvGADaIlaNG~VvNKiGT~~lAl-aAk~~~VPVyV~ 562 (640)
+++.. +.+ ....+-..+|.|| |+|+--|--=.--|-+.-.+ ..+..+.||+-+
T Consensus 134 ~~~~~~~~~-~~~~l~~~~dlII---DALfGtGl~~~l~~~~~~lI~~iN~~~~~VvAV 188 (265)
T 2o8n_A 134 IPFLGEMPP-EPMMVDELYELVV---DAIFGFSFKGDVREPFHSILSVLSGLTVPIASI 188 (265)
T ss_dssp CCBCSSCCS-SHHHHHHHCSEEE---EESCCTTCCCCCCTTHHHHHHHHHTCSSCEEEE
T ss_pred CcEEecccc-hhhhccCCCcEEE---EeeccCCCCCCCcHHHHHHHHHHHhcCCCEEEE
Confidence 87631 111 1111223678775 77877663222223333222 345567787643
No 112
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=48.22 E-value=1.3e+02 Score=25.71 Aligned_cols=57 Identities=16% Similarity=0.135 Sum_probs=31.2
Q ss_pred hCCCc---eEEEechHHHHHhh-----hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEec
Q 006577 503 RKGLS---CTYTHINAISYIIH-----EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (640)
Q Consensus 503 ~~GI~---vTlI~DsAv~~iM~-----~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~a 563 (640)
+.|++ +.+......-.++. ++|.|++|+..- +|-- --.|+..-.+ .++-.+||+|+-
T Consensus 82 ~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~--~~~~-~~~Gs~~~~v-l~~~~~pVlvv~ 146 (150)
T 3tnj_A 82 TLGIDPAHRWLVWGEPREEIIRIAEQENVDLIVVGSHGR--HGLA-LLLGSTANSV-LHYAKCDVLAVR 146 (150)
T ss_dssp HHTCCGGGEEEEESCHHHHHHHHHHHTTCSEEEEEEC-----------CCCHHHHH-HHHCSSEEEEEE
T ss_pred HcCCCcceEEEecCCHHHHHHHHHHHcCCCEEEEecCCC--CCcC-eEecchHHHH-HHhCCCCEEEEe
Confidence 34766 33444444444443 799999998763 2222 3456655554 455679999973
No 113
>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*
Probab=48.20 E-value=60 Score=32.11 Aligned_cols=98 Identities=19% Similarity=0.121 Sum_probs=58.1
Q ss_pred CCEEEeecCcHHHHH-HHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEE--e-chHHHHHhhhccEEEEcc
Q 006577 455 GDVLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT--H-INAISYIIHEVTRVFLGA 530 (640)
Q Consensus 455 gdvILT~g~SstV~~-vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI--~-DsAv~~iM~~VdkVlvGA 530 (640)
+.+||..|-++.+-. +++.+.++| .+|+++.-++.. .++.+... . ...+..++.++|.||--|
T Consensus 19 ~~~vlVtGatG~iG~~l~~~L~~~G--~~V~~~~r~~~~-----------~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A 85 (347)
T 4id9_A 19 SHMILVTGSAGRVGRAVVAALRTQG--RTVRGFDLRPSG-----------TGGEEVVGSLEDGQALSDAIMGVSAVLHLG 85 (347)
T ss_dssp --CEEEETTTSHHHHHHHHHHHHTT--CCEEEEESSCCS-----------SCCSEEESCTTCHHHHHHHHTTCSEEEECC
T ss_pred CCEEEEECCCChHHHHHHHHHHhCC--CEEEEEeCCCCC-----------CCccEEecCcCCHHHHHHHHhCCCEEEECC
Confidence 567888888877644 445555555 567777555432 34433321 1 234556677888888665
Q ss_pred eeEecCCC------eecccchHHHHHHHhhCCCcEEEeccc
Q 006577 531 SSVLSNGT------VCSRVGTACVAMVAYGFHIPVLVCCEA 565 (640)
Q Consensus 531 DaIlaNG~------VvNKiGT~~lAlaAk~~~VPVyV~aet 565 (640)
-....+.. -+|-.||..+.-+|+.+++.-+|.+.+
T Consensus 86 ~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~V~~SS 126 (347)
T 4id9_A 86 AFMSWAPADRDRMFAVNVEGTRRLLDAASAAGVRRFVFASS 126 (347)
T ss_dssp CCCCSSGGGHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred cccCcchhhHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECC
Confidence 32221111 136679999999999999866655444
No 114
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Probab=47.82 E-value=59 Score=32.55 Aligned_cols=104 Identities=16% Similarity=0.076 Sum_probs=58.3
Q ss_pred cCC-CEEEeecCcHHHHHHHHHHHHcCC---eeEEEEcCCCCCchHHHHHHHHHhCCCceEEEech---------HHHHH
Q 006577 453 RDG-DVLLTYGSSSAVEMILQHAHELGK---QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN---------AISYI 519 (640)
Q Consensus 453 ~dg-dvILT~g~SstV~~vL~~A~e~Gk---~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds---------Av~~i 519 (640)
... .+++|.|.+..+..++..+.+.|. +-+|++. .|.+.+... .+...|+.+..+... .+-..
T Consensus 89 ~~~~~i~~t~g~~~al~~~~~~~~~~g~~~~~d~vl~~--~p~~~~~~~--~~~~~g~~~~~v~~~~~g~~~d~~~l~~~ 164 (396)
T 3jtx_A 89 DADNEILPVLGSREALFSFVQTVLNPVSDGIKPAIVSP--NPFYQIYEG--ATLLGGGEIHFANCPAPSFNPDWRSISEE 164 (396)
T ss_dssp CTTTSEEEESSHHHHHHHHHHHHCCC---CCCCEEEEE--ESCCHHHHH--HHHHTTCEEEEEECCTTTCCCCGGGSCHH
T ss_pred CCCCeEEEcCCcHHHHHHHHHHHhCCCCccCCCEEEEc--CCCcHhHHH--HHHHcCCEEEEeecCCCCCccCHHHHHHh
Confidence 345 788887777777766666644432 1355553 466666543 345578887776521 12222
Q ss_pred h-hhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 520 I-HEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 520 M-~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
+ +++..|++- .---..|.++..---..++-+|+.|++.+++
T Consensus 165 ~~~~~~~v~l~-~p~nptG~~~~~~~l~~i~~~~~~~~~~li~ 206 (396)
T 3jtx_A 165 VWKRTKLVFVC-SPNNPSGSVLDLDGWKEVFDLQDKYGFIIAS 206 (396)
T ss_dssp HHHTEEEEEEE-SSCTTTCCCCCHHHHHHHHHHHHHHCCEEEE
T ss_pred hccCcEEEEEE-CCCCCCCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence 2 245555542 2223345555444444577788999998776
No 115
>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*
Probab=47.74 E-value=1e+02 Score=30.62 Aligned_cols=98 Identities=15% Similarity=0.157 Sum_probs=52.9
Q ss_pred CCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechH---H---HHHh----hhcc
Q 006577 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA---I---SYII----HEVT 524 (640)
Q Consensus 455 gdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsA---v---~~iM----~~Vd 524 (640)
..+++|-|.+..+..+++.+ .| -+|++. .|.+.|... .+...|..+..+.... . ..++ .++.
T Consensus 77 ~~v~~~~g~~~al~~~~~~~--~g--d~vl~~--~p~y~~~~~--~~~~~g~~~~~v~~~~~~~~~~l~~~~~~~~~~~~ 148 (364)
T 1lc5_A 77 SWILAGNGETESIFTVASGL--KP--RRAMIV--TPGFAEYGR--ALAQSGCEIRRWSLREADGWQLTDAILEALTPDLD 148 (364)
T ss_dssp GGEEEESSHHHHHHHHHHHH--CC--SEEEEE--ESCCTHHHH--HHHHTTCEEEEEECCGGGTTCCCTTHHHHCCTTCC
T ss_pred HHEEECCCHHHHHHHHHHHc--CC--CeEEEe--CCCcHHHHH--HHHHcCCeEEEEeCCcccccchhHHHHHhccCCCC
Confidence 45777777777776666655 45 355554 366666443 3344688777765321 1 1122 2444
Q ss_pred EEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 525 RVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 525 kVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
.|++ .+--...|.++..-=--.++-+|++|++.+++
T Consensus 149 ~v~i-~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~ 184 (364)
T 1lc5_A 149 CLFL-CTPNNPTGLLPERPLLQAIADRCKSLNINLIL 184 (364)
T ss_dssp EEEE-ESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred EEEE-eCCCCCCCCCCCHHHHHHHHHHhhhcCcEEEE
Confidence 5544 22222235444332234566688999998876
No 116
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=47.59 E-value=1.7e+02 Score=26.79 Aligned_cols=35 Identities=3% Similarity=-0.239 Sum_probs=28.1
Q ss_pred HHHHHHHHhCCCceEEEechHHHHHhhh---ccEEEEc
Q 006577 495 KLLLRRLVRKGLSCTYTHINAISYIIHE---VTRVFLG 529 (640)
Q Consensus 495 ~~La~eL~~~GI~vTlI~DsAv~~iM~~---VdkVlvG 529 (640)
.++++.+.+.|+++..|+++.-+.+.+. +|.+|.-
T Consensus 126 i~~~~~ak~~g~~vI~IT~~~~s~la~~~~~ad~~l~~ 163 (196)
T 2yva_A 126 VKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVEIRI 163 (196)
T ss_dssp HHHHHHHHHTTCEEEEEECTTCHHHHTTCCTTSEEEEC
T ss_pred HHHHHHHHHCCCEEEEEeCCCCchhhhcccCCCEEEEe
Confidence 4556888889999999999877777776 8988754
No 117
>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1
Probab=47.57 E-value=98 Score=31.68 Aligned_cols=102 Identities=13% Similarity=0.152 Sum_probs=53.6
Q ss_pred CCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEec-------hHHHHHhh-----
Q 006577 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI-------NAISYIIH----- 521 (640)
Q Consensus 454 dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D-------sAv~~iM~----- 521 (640)
...+++|-|.+..+..+++.+.+.| -+|++. .|.+.|... .+...|+.+..+.. ..+-..+.
T Consensus 109 ~~~v~~t~G~~~al~~~~~~l~~~g--d~Vl~~--~p~y~~~~~--~~~~~g~~~~~v~~~~~~~d~~~l~~~l~~~~~~ 182 (425)
T 1vp4_A 109 EDNLIFTVGSQQALDLIGKLFLDDE--SYCVLD--DPAYLGAIN--AFRQYLANFVVVPLEDDGMDLNVLERKLSEFDKN 182 (425)
T ss_dssp GGGEEEEEHHHHHHHHHHHHHCCTT--CEEEEE--ESCCHHHHH--HHHTTTCEEEEEEEETTEECHHHHHHHHHHHHHT
T ss_pred cccEEEeccHHHHHHHHHHHhCCCC--CEEEEe--CCCcHHHHH--HHHHcCCEEEEeccCCCCCCHHHHHHHHHhhhhc
Confidence 3467888777777766666554333 355554 356666433 34446877766542 12333333
Q ss_pred ----hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 522 ----EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 522 ----~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
++..|++=..--...|.++..-=--.|+-+|++|++.+++
T Consensus 183 ~~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~ 226 (425)
T 1vp4_A 183 GKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVE 226 (425)
T ss_dssp TCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred ccCCCceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence 2334432221112234444322123567788999998776
No 118
>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}
Probab=47.54 E-value=2.2e+02 Score=28.22 Aligned_cols=101 Identities=13% Similarity=0.169 Sum_probs=53.2
Q ss_pred CCEEEeecCcHHHHHHHHHHH----HcCCeeEEEEcCCCCCchHHHHH-HHHHhCCCceEEEech-----HHHHH---hh
Q 006577 455 GDVLLTYGSSSAVEMILQHAH----ELGKQFRVVIVDSRPKHEGKLLL-RRLVRKGLSCTYTHIN-----AISYI---IH 521 (640)
Q Consensus 455 gdvILT~g~SstV~~vL~~A~----e~Gk~f~ViV~ESRP~~eG~~La-~eL~~~GI~vTlI~Ds-----Av~~i---M~ 521 (640)
..+++|-|-+..+..++..+. +.|.. +|++.+ +.+.+.... ..+...|+.+..+... -+..+ +.
T Consensus 81 ~~v~~~~g~t~al~~~~~~l~~~~~~~gd~-~Vl~~~--~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~ 157 (400)
T 3vax_A 81 DELIFTSGATESNNIALLGLAPYGERTGRR-HIITSA--IEHKAVLEPLEHLAGRGFEVDFLTPGPSGRISVEGVMERLR 157 (400)
T ss_dssp GGEEEESCHHHHHHHHHHTTHHHHHHHTCC-EEEEET--TSCHHHHHHHHHHHTTTCEEEEECCCTTCCCCHHHHHTTCC
T ss_pred CcEEEeCCHHHHHHHHHHHHHHhhccCCCC-EEEECc--cccHhHHHHHHHHHhcCCeEEEEccCCCCCcCHHHHHHhcC
Confidence 357777666666665655543 44431 555543 333333222 4455679988887632 12222 22
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 522 ~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
+=.++|+=...--..|.+.. --.|+-+|+.|++.+++
T Consensus 158 ~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~ 194 (400)
T 3vax_A 158 PDTLLVSLMHVNNETGVIQP---VAELAQQLRATPTYLHV 194 (400)
T ss_dssp TTEEEEECCSBCTTTCBBCC---HHHHHHHHTTSSCEEEE
T ss_pred CCceEEEEECCCCCceeeCc---HHHHHHHHHhcCCEEEE
Confidence 21233333322233454443 25677789999998876
No 119
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=47.29 E-value=97 Score=31.04 Aligned_cols=101 Identities=11% Similarity=0.072 Sum_probs=54.1
Q ss_pred CCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEec-----------hHHHHHhh-
Q 006577 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI-----------NAISYIIH- 521 (640)
Q Consensus 454 dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D-----------sAv~~iM~- 521 (640)
...+++|-|.+..+..++..+.+.| -+|++. .|.+.|...+ +...|+.+..+.. ..+-..+.
T Consensus 89 ~~~v~~t~g~~~a~~~~~~~l~~~g--d~vl~~--~p~~~~~~~~--~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~ 162 (399)
T 1c7n_A 89 TDWIINTAGVVPAVFNAVREFTKPG--DGVIII--TPVYYPFFMA--IKNQERKIIECELLEKDGYYTIDFQKLEKLSKD 162 (399)
T ss_dssp GGGEEEESSHHHHHHHHHHHHCCTT--CEEEEC--SSCCTHHHHH--HHTTTCEEEECCCEEETTEEECCHHHHHHHHTC
T ss_pred hhhEEEcCCHHHHHHHHHHHhcCCC--CEEEEc--CCCcHhHHHH--HHHcCCEEEecccccCCCCEEEcHHHHHHHhcc
Confidence 3457777666666666666554333 355553 4677665433 3445766655431 12333333
Q ss_pred -hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 522 -EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 522 -~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
++..|++ ...-...|.++..-=-..|+-+|++|++.+++
T Consensus 163 ~~~~~v~~-~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~ 202 (399)
T 1c7n_A 163 KNNKALLF-CSPHNPVGRVWKKDELQKIKDIVLKSDLMLWS 202 (399)
T ss_dssp TTEEEEEE-ESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEE
T ss_pred CCCcEEEE-cCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEE
Confidence 4445544 33222335544433234566788999998776
No 120
>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*
Probab=47.27 E-value=18 Score=36.68 Aligned_cols=104 Identities=14% Similarity=0.158 Sum_probs=68.2
Q ss_pred CCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEcceeEe
Q 006577 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVL 534 (640)
Q Consensus 455 gdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGADaIl 534 (640)
-|.++.+-....+..++..|.+.|.+.-|++.+.-+..+-.+|.....+.|+. ++-.|.++.+-+..-+...-...+.
T Consensus 65 ~D~viI~tP~~~~~~~~~ea~~~Gi~~iVi~t~G~~~~~~~~l~~~A~~~gv~--liGPNc~Gi~~p~~~~~~~~~~~~~ 142 (288)
T 2nu8_A 65 ATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLDEAGVR--MIGPNTPGVITPGECKIGIQPGHIH 142 (288)
T ss_dssp CCEEEECCCGGGHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHHHHTCE--EECSSCCEEEETTTEEEESSCTTSC
T ss_pred CCEEEEecCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCE--EEecCCcceecCCcceeEecccCCC
Confidence 47777777888899999999999987767777777766666777777777763 4555655554443222211111223
Q ss_pred cCC--CeecccchHHHHHH--HhhCCCcEE
Q 006577 535 SNG--TVCSRVGTACVAMV--AYGFHIPVL 560 (640)
Q Consensus 535 aNG--~VvNKiGT~~lAla--Ak~~~VPVy 560 (640)
.-| +++++.||+..+++ +...++.|-
T Consensus 143 ~~G~i~~vsqSG~l~~~~~~~~~~~g~G~s 172 (288)
T 2nu8_A 143 KPGKVGIVSRSGTLTYEAVKQTTDYGFGQS 172 (288)
T ss_dssp CEEEEEEEESCHHHHHHHHHHHHHTTCCEE
T ss_pred CCCCEEEEECcHHHHHHHHHHHHhcCCCEE
Confidence 334 46888999776664 566777775
No 121
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Probab=46.96 E-value=57 Score=34.65 Aligned_cols=98 Identities=17% Similarity=0.151 Sum_probs=54.7
Q ss_pred EEeecCcHHHHHHHHHHHHcCC------eeEEEEcCCCCCchHHHHHHHHHhCCCceEEEec--------hHHHHHhhhc
Q 006577 458 LLTYGSSSAVEMILQHAHELGK------QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--------NAISYIIHEV 523 (640)
Q Consensus 458 ILT~g~SstV~~vL~~A~e~Gk------~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D--------sAv~~iM~~V 523 (640)
++|.|-+..+..+|+.+.+.|. +-+|++. .|.+.+. .+.+...|+.+..+.- .++-..+.+-
T Consensus 164 ~~t~ggt~a~~~al~a~~~~g~~~~g~~~d~Vi~~--~~~~~~~--~~~~~~~G~~v~~v~~~~~~~~d~~~Le~~i~~~ 239 (514)
T 3mad_A 164 TVTSGGTESLLLAMKTYRDWARATKGITAPEAVVP--VSAHAAF--DKAAQYFGIKLVRTPLDADYRADVAAMREAITPN 239 (514)
T ss_dssp EEESSHHHHHHHHHHHHHHHHHHHHCCSSCEEEEE--TTSCTHH--HHHHHHHTCEEEEECBCTTSCBCHHHHHHHCCTT
T ss_pred EEcCcHHHHHHHHHHHHHHHhhhhcCCCCCeEEEe--CccchHH--HHHHHHcCCeeEEeeeCCCCCCCHHHHHHHhccC
Confidence 7777777777777766654431 1356553 4555543 2334445888887762 2333334332
Q ss_pred cEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEe
Q 006577 524 TRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (640)
Q Consensus 524 dkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~ 562 (640)
.++|+...--...|.+.. --.|+-+|+.|+++++|=
T Consensus 240 ~~~v~~~~~~nptG~~~~---l~~i~~la~~~~i~livD 275 (514)
T 3mad_A 240 TVVVAGSAPGYPHGVVDP---IPEIAALAAEHGIGCHVD 275 (514)
T ss_dssp EEEEEEETTCTTTCCCCC---HHHHHHHHHHHTCEEEEE
T ss_pred CEEEEEeCCCCCCccccC---HHHHHHHHHHhCCeEEEe
Confidence 344433322223455543 356777899999998873
No 122
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=46.89 E-value=57 Score=27.27 Aligned_cols=57 Identities=14% Similarity=0.094 Sum_probs=40.0
Q ss_pred EEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCC-CCchHHHHHHHHHh------CCCceEEEec
Q 006577 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSR-PKHEGKLLLRRLVR------KGLSCTYTHI 513 (640)
Q Consensus 457 vILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESR-P~~eG~~La~eL~~------~GI~vTlI~D 513 (640)
.|.+..+...+...|......+..+.++++|-. |...|..+++.|.+ ..+++.+++.
T Consensus 37 ~v~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~~~ii~~t~ 100 (146)
T 3ilh_A 37 EIQSVTSGNAAINKLNELYAAGRWPSIICIDINMPGINGWELIDLFKQHFQPMKNKSIVCLLSS 100 (146)
T ss_dssp EEEEESSHHHHHHHHHHHHTSSCCCSEEEEESSCSSSCHHHHHHHHHHHCGGGTTTCEEEEECS
T ss_pred eeeecCCHHHHHHHHHHhhccCCCCCEEEEcCCCCCCCHHHHHHHHHHhhhhccCCCeEEEEeC
Confidence 555555555666666665555677888888854 88899999998887 3466666654
No 123
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=46.61 E-value=59 Score=31.13 Aligned_cols=38 Identities=18% Similarity=-0.024 Sum_probs=31.1
Q ss_pred hHHHHHHHHHh--CCCceEEEechHHHHHhhhccEEEEcc
Q 006577 493 EGKLLLRRLVR--KGLSCTYTHINAISYIIHEVTRVFLGA 530 (640)
Q Consensus 493 eG~~La~eL~~--~GI~vTlI~DsAv~~iM~~VdkVlvGA 530 (640)
+=..+++.+.+ .|+++..|+++.-+.+-+.+|.+|.-.
T Consensus 121 ~~i~~~~~ak~~~~Ga~vI~IT~~~~s~La~~aD~~l~~~ 160 (220)
T 3etn_A 121 EIVELTQLAHNLNPGLKFIVITGNPDSPLASESDVCLSTG 160 (220)
T ss_dssp HHHHHHHHHHHHCTTCEEEEEESCTTSHHHHHSSEEEECC
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCChhHHhCCEEEEcC
Confidence 33455688888 999999999988888888899988743
No 124
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=46.47 E-value=2.2e+02 Score=27.88 Aligned_cols=96 Identities=17% Similarity=0.198 Sum_probs=51.0
Q ss_pred CEEEeecCcHHHHHHHHHHH----HcCCeeEEEEcCCCCCchHHHHH-HHHHhCCCceEEEec--------hHHHHHhhh
Q 006577 456 DVLLTYGSSSAVEMILQHAH----ELGKQFRVVIVDSRPKHEGKLLL-RRLVRKGLSCTYTHI--------NAISYIIHE 522 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~----e~Gk~f~ViV~ESRP~~eG~~La-~eL~~~GI~vTlI~D--------sAv~~iM~~ 522 (640)
.+++|.|.+..+..++..+. +.|. +|++. .|.+.+...+ ..|...|+.+..+.. ..+-..+..
T Consensus 62 ~v~~~~g~t~a~~~~~~~l~~~~~~~gd--~Vl~~--~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~ 137 (382)
T 4eb5_A 62 TVVFTSGATEANNLAIIGYAMRNARKGK--HILVS--AVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLRD 137 (382)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHGGGCC--EEEEE--TTCCHHHHHHHHHHTTTTCEEEEECBCTTSCBCHHHHHHHCCT
T ss_pred eEEEcCchHHHHHHHHHHHHhhccCCCC--EEEEC--CCcchHHHHHHHHHHhCCcEEEEeccCCCCccCHHHHHHHhcC
Confidence 56677666666665665554 4443 55554 3444444333 445567988887752 122222322
Q ss_pred ccEEEEcceeEecCCCeecccchHHHHHHHhhCCCc
Q 006577 523 VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIP 558 (640)
Q Consensus 523 VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VP 558 (640)
=.++|+-...-...|.+.. --.|+-+|++|++.
T Consensus 138 ~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~ 170 (382)
T 4eb5_A 138 DTILVSVQHANNEIGTIQP---VEEISEVLAGKAAL 170 (382)
T ss_dssp TEEEEECCSBCTTTCBBCC---HHHHHHHHTTSSEE
T ss_pred CCeEEEEeccCCCccccCC---HHHHHHHHHHCCCE
Confidence 1234433333333365554 24677788999987
No 125
>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...
Probab=46.39 E-value=1.4e+02 Score=29.70 Aligned_cols=104 Identities=14% Similarity=0.054 Sum_probs=52.3
Q ss_pred CCCEEE--eecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEec---h-------HHHHHhh
Q 006577 454 DGDVLL--TYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI---N-------AISYIIH 521 (640)
Q Consensus 454 dgdvIL--T~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D---s-------Av~~iM~ 521 (640)
...+++ |.|-+..+..+++.+..-+..-+|++. .|.+.|.... +...|+.+..+.. . .+-..+.
T Consensus 92 ~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~Vl~~--~p~y~~~~~~--~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~ 167 (396)
T 2q7w_A 92 DKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVS--NPSWPNHKSV--FNSAGLEVREYAYYDAENHTLDFDALINSLN 167 (396)
T ss_dssp TTCEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEE--ESCCTHHHHH--HHHTTCEEEEEECEETTTTEECHHHHHHHHT
T ss_pred cccEEEEecccchhhHHHHHHHHHHhCCCCEEEEc--CCCchhHHHH--HHHcCCceEEEecccCCCCCcCHHHHHHHHH
Confidence 345555 666666666555443221122245554 3666664433 3346777766643 1 2333333
Q ss_pred h---ccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 522 E---VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 522 ~---VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
+ -+++++=..---..|.++..-=-..++-+|++|++.+++
T Consensus 168 ~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 210 (396)
T 2q7w_A 168 EAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLF 210 (396)
T ss_dssp TCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred hCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 2 244444333333334444332223577788899988776
No 126
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=46.37 E-value=1.3e+02 Score=25.34 Aligned_cols=55 Identities=16% Similarity=0.246 Sum_probs=31.9
Q ss_pred CCC-ceEE--EechHHHHHhh-----hccEEEEcceeEecCCCeec-ccchHHHHHHHhhCCCcEEEe
Q 006577 504 KGL-SCTY--THINAISYIIH-----EVTRVFLGASSVLSNGTVCS-RVGTACVAMVAYGFHIPVLVC 562 (640)
Q Consensus 504 ~GI-~vTl--I~DsAv~~iM~-----~VdkVlvGADaIlaNG~VvN-KiGT~~lAlaAk~~~VPVyV~ 562 (640)
.|+ +++. ........++. ++|+|++|++.- +.+-. -.|+..-.+ .++-++||+|+
T Consensus 73 ~g~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~---~~~~~~~~Gs~~~~v-l~~~~~pVlvv 136 (137)
T 2z08_A 73 TGVPKEDALLLEGVPAEAILQAARAEKADLIVMGTRGL---GALGSLFLGSQSQRV-VAEAPCPVLLV 136 (137)
T ss_dssp HCCCGGGEEEEESSHHHHHHHHHHHTTCSEEEEESSCT---TCCSCSSSCHHHHHH-HHHCSSCEEEE
T ss_pred cCCCccEEEEEecCHHHHHHHHHHHcCCCEEEECCCCC---chhhhhhhccHHHHH-HhcCCCCEEEe
Confidence 677 5443 33333333333 799999998753 22221 256655444 45578999986
No 127
>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3
Probab=46.22 E-value=1.2e+02 Score=31.40 Aligned_cols=97 Identities=15% Similarity=0.130 Sum_probs=52.8
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHH--HHHhCCCceEEE-ec---hHHHHHhh-hccEEEE
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLR--RLVRKGLSCTYT-HI---NAISYIIH-EVTRVFL 528 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~--eL~~~GI~vTlI-~D---sAv~~iM~-~VdkVlv 528 (640)
+.|++-+-+..+..+|..+...| -+|++. .+.+.|..... .+...|+.+.++ .. ..+-..+. ++..|++
T Consensus 75 ~~v~~~sGt~A~~~~l~~~~~~g--d~vi~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~i~~~~~~v~~ 150 (421)
T 2ctz_A 75 AALATASGHAAQFLALTTLAQAG--DNIVST--PNLYGGTFNQFKVTLKRLGIEVRFTSREERPEEFLALTDEKTRAWWV 150 (421)
T ss_dssp EEEEESSHHHHHHHHHHHHCCTT--CEEEEC--SCCCHHHHHHHHTHHHHTTCEEEECCTTCCHHHHHHHCCTTEEEEEE
T ss_pred ceEEecCHHHHHHHHHHHHhCCC--CEEEEe--CCCchHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHhhccCCeEEEE
Confidence 34444333444555555443333 355554 46666654432 256789999888 42 23333343 3334443
Q ss_pred cceeEec-CCCeecccchHHHHHHHhhCCCcEEE
Q 006577 529 GASSVLS-NGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 529 GADaIla-NG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
+.+.. .|.+.. --.|+-+|++|++.++|
T Consensus 151 --~~~~n~~G~~~~---l~~i~~~a~~~g~~liv 179 (421)
T 2ctz_A 151 --ESIGNPALNIPD---LEALAQAAREKGVALIV 179 (421)
T ss_dssp --ESSCTTTCCCCC---HHHHHHHHHHHTCEEEE
T ss_pred --ECCCCCCCcccC---HHHHHHHHHHcCCEEEE
Confidence 33332 354444 45677889999998886
No 128
>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}
Probab=46.15 E-value=24 Score=35.96 Aligned_cols=105 Identities=19% Similarity=0.174 Sum_probs=69.5
Q ss_pred CCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEcceeEe
Q 006577 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVL 534 (640)
Q Consensus 455 gdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGADaIl 534 (640)
-|+++.+-....+..++..|.+.|.+.-|++.+.-|..+-.++...+.+.|+ .++-.|+++.+-....+..+....+.
T Consensus 72 ~DvaIi~vp~~~~~~~v~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi--~viGPNc~Gii~~~~~~~~~~~~~~~ 149 (297)
T 2yv2_A 72 INTSIVFVPAPFAPDAVYEAVDAGIRLVVVITEGIPVHDTMRFVNYARQKGA--TIIGPNCPGAITPGQAKVGIMPGHIF 149 (297)
T ss_dssp CCEEEECCCGGGHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHHHHTC--EEECSSSCEEEETTTEEEESCCGGGC
T ss_pred CCEEEEecCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCC--EEEcCCCCeeEcccccceeecccCCC
Confidence 4778778888889999999999887766666666665555566677777776 45656666555554333322222233
Q ss_pred cCC--CeecccchHHHHHH--HhhCCCcEEE
Q 006577 535 SNG--TVCSRVGTACVAMV--AYGFHIPVLV 561 (640)
Q Consensus 535 aNG--~VvNKiGT~~lAla--Ak~~~VPVyV 561 (640)
.-| +++++.|++..+++ +...++.|--
T Consensus 150 ~~G~va~vSqSG~l~~~~~~~~~~~g~G~s~ 180 (297)
T 2yv2_A 150 KEGGVAVVSRSGTLTYEISYMLTRQGIGQST 180 (297)
T ss_dssp CEEEEEEEESCHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHcCCCeeE
Confidence 334 57899999987775 4557777753
No 129
>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*
Probab=46.14 E-value=73 Score=32.72 Aligned_cols=97 Identities=15% Similarity=0.112 Sum_probs=53.2
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHH-HHH-HHHHhCCCceEEEechH---HHHHhh-hccEEEEc
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLL-RRLVRKGLSCTYTHINA---ISYIIH-EVTRVFLG 529 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~-~La-~eL~~~GI~vTlI~DsA---v~~iM~-~VdkVlvG 529 (640)
+.|+|-+-+..+..+|..+.+.|. +|++. .|.+.|. .+. ..+...|+.++++.-.. +-..+. ++..|++
T Consensus 83 ~~~~~~sGt~A~~~al~~~~~~gd--~Vi~~--~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~~~v~~- 157 (392)
T 3qhx_A 83 FGRAFSSGMAAADCALRAMLRPGD--HVVIP--DDAYGGTFRLIDKVFTGWNVEYTPVALADLDAVRAAIRPTTRLIWV- 157 (392)
T ss_dssp EEEEESSHHHHHHHHHHHHCCTTC--EEEEE--TTCCHHHHHHHHHTGGGGTCEEEEECTTCHHHHHHHCCTTEEEEEE-
T ss_pred cEEEECCHHHHHHHHHHHHhCCCC--EEEEe--CCCcchHHHHHHHHHHhcCcEEEEeCCCCHHHHHHhhCCCCeEEEE-
Confidence 456665545555556665544343 55553 4555553 333 34466799999987433 333333 3444443
Q ss_pred ceeEe-cCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 530 ASSVL-SNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 530 ADaIl-aNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
..+. ..|.+.. --.|+-+|++|++.++|
T Consensus 158 -~~~~nptG~~~~---l~~i~~la~~~g~~li~ 186 (392)
T 3qhx_A 158 -ETPTNPLLSIAD---IAGIAQLGADSSAKVLV 186 (392)
T ss_dssp -ESSCTTTCCCCC---HHHHHHHHHHHTCEEEE
T ss_pred -ECCCCCCcEEec---HHHHHHHHHHcCCEEEE
Confidence 2222 2233322 35677889999998887
No 130
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=46.12 E-value=1.5e+02 Score=28.64 Aligned_cols=104 Identities=19% Similarity=0.351 Sum_probs=56.9
Q ss_pred EEEeecCcHHHHHHHHH----HHHcCCeeEEEEcCCCCC-c-hHHHHHHHHHhCCCceEEE--echHHHHHhh-----hc
Q 006577 457 VLLTYGSSSAVEMILQH----AHELGKQFRVVIVDSRPK-H-EGKLLLRRLVRKGLSCTYT--HINAISYIIH-----EV 523 (640)
Q Consensus 457 vILT~g~SstV~~vL~~----A~e~Gk~f~ViV~ESRP~-~-eG~~La~eL~~~GI~vTlI--~DsAv~~iM~-----~V 523 (640)
+++-+..|..-...|.. |...+-.++|+-+...+. . .-..+...|.+.|+++.+. ..+....+.. ++
T Consensus 173 Ilv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~g~~~~~I~~~a~~~~~ 252 (294)
T 3loq_A 173 VLVAYDFSKWADRALEYAKFVVKKTGGELHIIHVSEDGDKTADLRVMEEVIGAEGIEVHVHIESGTPHKAILAKREEINA 252 (294)
T ss_dssp EEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEECSSSCCHHHHHHHHHHHHHTTCCEEEEEECSCHHHHHHHHHHHTTC
T ss_pred EEEEECCCHHHHHHHHHHHHHhhhcCCEEEEEEEccCchHHHHHHHHHHHHHHcCCcEEEEEecCCHHHHHHHHHHhcCc
Confidence 34445666543334433 334566676655443332 1 1233447788889886543 3333333333 68
Q ss_pred cEEEEcceeEecCCCeec-ccchHHHHHHHhhCCCcEEEecc
Q 006577 524 TRVFLGASSVLSNGTVCS-RVGTACVAMVAYGFHIPVLVCCE 564 (640)
Q Consensus 524 dkVlvGADaIlaNG~VvN-KiGT~~lAlaAk~~~VPVyV~ae 564 (640)
|++++|+.. .|.+-. -.|+..-. +.++-.+||+|+=+
T Consensus 253 dLlV~G~~~---~~~~~~~~~Gs~~~~-vl~~~~~pvLvv~~ 290 (294)
T 3loq_A 253 TTIFMGSRG---AGSVMTMILGSTSES-VIRRSPVPVFVCKR 290 (294)
T ss_dssp SEEEEECCC---CSCHHHHHHHCHHHH-HHHHCSSCEEEECS
T ss_pred CEEEEeCCC---CCCccceeeCcHHHH-HHhcCCCCEEEECC
Confidence 999999974 222222 14444333 44677899999743
No 131
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*
Probab=46.04 E-value=1.2e+02 Score=30.02 Aligned_cols=109 Identities=13% Similarity=0.053 Sum_probs=62.6
Q ss_pred CCCEEEeecCcHHHHH-HHHHHHHcCCeeEEEEcCCCCCchHHHH---HHHHH---hCCCceEEEec----hHHHHHhhh
Q 006577 454 DGDVLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLL---LRRLV---RKGLSCTYTHI----NAISYIIHE 522 (640)
Q Consensus 454 dgdvILT~g~SstV~~-vL~~A~e~Gk~f~ViV~ESRP~~eG~~L---a~eL~---~~GI~vTlI~D----sAv~~iM~~ 522 (640)
.+.+||..|.++.+-. +++.+.++| .+|+++.-++......+ ..++. ..++.+.. .| ..+..++.+
T Consensus 26 ~~~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Dl~d~~~~~~~~~~ 102 (352)
T 1sb8_A 26 QPKVWLITGVAGFIGSNLLETLLKLD--QKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQ-GDIRNLDDCNNACAG 102 (352)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEE-CCTTSHHHHHHHHTT
T ss_pred cCCeEEEECCCcHHHHHHHHHHHHCC--CEEEEEeCCCccchhhHHHHhhhcccccCCceEEEE-CCCCCHHHHHHHhcC
Confidence 3568999898877654 445555555 57777764443211122 11111 23443322 23 346667778
Q ss_pred ccEEEEcceeEecC---CC-----eecccchHHHHHHHhhCCCcEEEeccc
Q 006577 523 VTRVFLGASSVLSN---GT-----VCSRVGTACVAMVAYGFHIPVLVCCEA 565 (640)
Q Consensus 523 VdkVlvGADaIlaN---G~-----VvNKiGT~~lAlaAk~~~VPVyV~aet 565 (640)
+|.||--|-....+ .+ -+|-.||..+.-+|+..++.-+|.+.+
T Consensus 103 ~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS 153 (352)
T 1sb8_A 103 VDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAAS 153 (352)
T ss_dssp CSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred CCEEEECCcccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecc
Confidence 88887766422100 01 157789999999999999876655444
No 132
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=46.01 E-value=58 Score=28.50 Aligned_cols=60 Identities=17% Similarity=0.125 Sum_probs=35.4
Q ss_pred HHHhCCCceEEEe--chHHHHH---hh--hccEEEEcceeEecCCCeec-ccchHHHHHHHhhCCCcEEEec
Q 006577 500 RLVRKGLSCTYTH--INAISYI---IH--EVTRVFLGASSVLSNGTVCS-RVGTACVAMVAYGFHIPVLVCC 563 (640)
Q Consensus 500 eL~~~GI~vTlI~--DsAv~~i---M~--~VdkVlvGADaIlaNG~VvN-KiGT~~lAlaAk~~~VPVyV~a 563 (640)
.|...|++++... ......+ .+ ++|+|++|++.- |.+-. -.|+..-.+ .++-.+||+|+-
T Consensus 91 ~~~~~g~~~~~~v~~G~~~~~I~~~a~~~~~dlIV~G~~g~---~~~~~~~~GSv~~~v-l~~~~~pVlvv~ 158 (162)
T 1mjh_A 91 ELEDVGFKVKDIIVVGIPHEEIVKIAEDEGVDIIIMGSHGK---TNLKEILLGSVTENV-IKKSNKPVLVVK 158 (162)
T ss_dssp HHHHTTCEEEEEEEEECHHHHHHHHHHHTTCSEEEEESCCS---SCCTTCSSCHHHHHH-HHHCCSCEEEEC
T ss_pred HHHHcCCceEEEEcCCCHHHHHHHHHHHcCCCEEEEcCCCC---CCccceEecchHHHH-HHhCCCCEEEEe
Confidence 3455788876433 2222233 33 799999999753 22222 256655444 445689999973
No 133
>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*
Probab=45.97 E-value=61 Score=32.77 Aligned_cols=112 Identities=9% Similarity=0.099 Sum_probs=66.3
Q ss_pred cCCCEEEeecCcHHHHH-HHHHHHHc-CCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEec----hHHHHHhhhccEE
Q 006577 453 RDGDVLLTYGSSSAVEM-ILQHAHEL-GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI----NAISYIIHEVTRV 526 (640)
Q Consensus 453 ~dgdvILT~g~SstV~~-vL~~A~e~-Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D----sAv~~iM~~VdkV 526 (640)
..|.+||..|-++.+-. +.+.+.++ |. .+|+++...+. ....+...|...++.+. +.| ..+..++..+|.|
T Consensus 19 ~~~k~vlVTGatG~iG~~l~~~L~~~~g~-~~V~~~~r~~~-~~~~~~~~~~~~~v~~~-~~Dl~d~~~l~~~~~~~D~V 95 (344)
T 2gn4_A 19 LDNQTILITGGTGSFGKCFVRKVLDTTNA-KKIIVYSRDEL-KQSEMAMEFNDPRMRFF-IGDVRDLERLNYALEGVDIC 95 (344)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHHCCC-SEEEEEESCHH-HHHHHHHHHCCTTEEEE-ECCTTCHHHHHHHTTTCSEE
T ss_pred hCCCEEEEECCCcHHHHHHHHHHHhhCCC-CEEEEEECChh-hHHHHHHHhcCCCEEEE-ECCCCCHHHHHHHHhcCCEE
Confidence 34678999898877644 44555555 53 26666644322 22334445543444332 233 4566778888888
Q ss_pred EEcceeEec--------CCCeecccchHHHHHHHhhCCCcEEEeccccc
Q 006577 527 FLGASSVLS--------NGTVCSRVGTACVAMVAYGFHIPVLVCCEAYK 567 (640)
Q Consensus 527 lvGADaIla--------NG~VvNKiGT~~lAlaAk~~~VPVyV~aetyK 567 (640)
|--|-.... .---.|-.||..++-+|..+++.-+|...+.+
T Consensus 96 ih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~~v~~~V~~SS~~ 144 (344)
T 2gn4_A 96 IHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNAISQVIALSTDK 144 (344)
T ss_dssp EECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCGG
T ss_pred EECCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEecCCc
Confidence 876632110 00114678999999999999998777666543
No 134
>1nri_A Hypothetical protein HI0754; structural genomics, haemophilus influ PSI, protein structure initiative, midwest center for struc genomics; 1.90A {Haemophilus influenzae} SCOP: c.80.1.3
Probab=45.97 E-value=2.5e+02 Score=28.32 Aligned_cols=56 Identities=14% Similarity=-0.070 Sum_probs=38.6
Q ss_pred chHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEcc---eeEecCCCeecccchHHHH
Q 006577 492 HEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA---SSVLSNGTVCSRVGTACVA 549 (640)
Q Consensus 492 ~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGA---DaIlaNG~VvNKiGT~~lA 549 (640)
-+=..+++.+.+.|+++..|+++.-+.+-+.+|.+|.-. +.+ .|....+.||.++.
T Consensus 154 ~~vi~al~~Ak~~Ga~~IaIT~~~~S~La~~AD~~I~~~~g~E~~--~~st~~~s~ta~~~ 212 (306)
T 1nri_A 154 PYVIAGLQYAKSLGALTISIASNPKSEMAEIADIAIETIVGPEIL--TGSSRLKSGTAQKM 212 (306)
T ss_dssp HHHHHHHHHHHHHTCEEEEEESSTTCHHHHHSSEEEECCCCSCSS--TTCTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCChHHHhCCEEEEcCCCCccc--cCcccchhHHHHHH
Confidence 344556688888999999999988888888899888532 221 33344566775543
No 135
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}
Probab=45.88 E-value=66 Score=32.69 Aligned_cols=100 Identities=12% Similarity=0.130 Sum_probs=53.7
Q ss_pred CCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechH-------HHHHhh----hc
Q 006577 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA-------ISYIIH----EV 523 (640)
Q Consensus 455 gdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsA-------v~~iM~----~V 523 (640)
..+++|.|.+..+..++..+...| -+|++.+ |.+.|.... +...|+.+..+.... +..+-+ ++
T Consensus 100 ~~v~~t~g~~~a~~~~~~~~~~~g--d~Vl~~~--p~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~ 173 (412)
T 2x5d_A 100 SEAIVTIGSKEGLAHLMLATLDHG--DTILVPN--PSYPIHIYG--AVIAGAQVRSVPLVPGIDFFNELERAIRESIPKP 173 (412)
T ss_dssp TSEEEESCHHHHHHHHHHHHCCTT--CEEEEEE--SCCHHHHHH--HHHHTCEEEEEECSTTSCHHHHHHHHHHTEESCC
T ss_pred cCEEEcCChHHHHHHHHHHhCCCC--CEEEEcC--CCchhHHHH--HHHcCCEEEEeecCCccCCCCCHHHHHHhcccCc
Confidence 467788777777766666554333 3555543 666665443 334577777665221 112211 34
Q ss_pred cEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 524 TRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 524 dkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
..|++ ..---..|.++..---..|+-+|+.|++.+++
T Consensus 174 ~~v~l-~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 210 (412)
T 2x5d_A 174 RMMIL-GFPSNPTAQCVELDFFERVVALAKQYDVMVVH 210 (412)
T ss_dssp SEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred eEEEE-CCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence 55555 22222234443332224466788999998776
No 136
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}
Probab=45.65 E-value=41 Score=32.90 Aligned_cols=99 Identities=11% Similarity=0.091 Sum_probs=57.8
Q ss_pred CEEEeecCcHHHHH-HHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEe--chHHHHHhhhccEEEEccee
Q 006577 456 DVLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH--INAISYIIHEVTRVFLGASS 532 (640)
Q Consensus 456 dvILT~g~SstV~~-vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~--DsAv~~iM~~VdkVlvGADa 532 (640)
.+||..|-++.+-. +++.+.++| .+|+++.-++...- |. ++.+...- ...+..+++++|.||--|-.
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~------~~--~~~~~~~Dl~~~~~~~~~~~~d~Vih~a~~ 72 (311)
T 3m2p_A 3 LKIAVTGGTGFLGQYVVESIKNDG--NTPIILTRSIGNKA------IN--DYEYRVSDYTLEDLINQLNDVDAVVHLAAT 72 (311)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCCC-------------CCEEEECCCCHHHHHHHTTTCSEEEECCCC
T ss_pred CEEEEECCCcHHHHHHHHHHHhCC--CEEEEEeCCCCccc------CC--ceEEEEccccHHHHHHhhcCCCEEEEcccc
Confidence 47888898877654 445555555 46777654433211 21 44432211 24455667788888766543
Q ss_pred EecC----CCeecccchHHHHHHHhhCCCcEEEecc
Q 006577 533 VLSN----GTVCSRVGTACVAMVAYGFHIPVLVCCE 564 (640)
Q Consensus 533 IlaN----G~VvNKiGT~~lAlaAk~~~VPVyV~ae 564 (640)
...+ -.-.|-.||..+.-+|+..+++-+|.+.
T Consensus 73 ~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~r~v~~S 108 (311)
T 3m2p_A 73 RGSQGKISEFHDNEILTQNLYDACYENNISNIVYAS 108 (311)
T ss_dssp CCSSSCGGGTHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEEc
Confidence 2211 1125778999999999999999444433
No 137
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=45.17 E-value=1.6e+02 Score=28.86 Aligned_cols=96 Identities=20% Similarity=0.181 Sum_probs=53.6
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEe---c-------hHHHHHhh----
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH---I-------NAISYIIH---- 521 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~---D-------sAv~~iM~---- 521 (640)
.+++|.|.+..+..++..+.+.| -+|++. .|.+.|...+ +...|+.+..+. | ..+-..+.
T Consensus 71 ~v~~~~g~t~a~~~~~~~~~~~g--d~vl~~--~~~~~~~~~~--~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~ 144 (371)
T 2e7j_A 71 VARVTNGAREAKFAVMHSLAKKD--AWVVMD--ENCHYSSYVA--AERAGLNIALVPKTDYPDYAITPENFAQTIEETKK 144 (371)
T ss_dssp EEEEESSHHHHHHHHHHHHCCTT--CEEEEE--TTCCHHHHHH--HHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTT
T ss_pred EEEEeCChHHHHHHHHHHHhCCC--CEEEEc--cCcchHHHHH--HHHcCCeEEEeecccCCCCCcCHHHHHHHHHhhcc
Confidence 55666555566666666554333 355554 4555555444 566788888776 2 12333343
Q ss_pred --hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 522 --EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 522 --~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
++ ++|+-..--...|.+..- -.|+-+|+.|++.+++
T Consensus 145 ~~~~-~~v~~~~~~nptG~~~~~---~~i~~~~~~~~~~li~ 182 (371)
T 2e7j_A 145 RGEV-VLALITYPDGNYGNLPDV---KKIAKVCSEYDVPLLV 182 (371)
T ss_dssp TSCE-EEEEEESSCTTTCCCCCH---HHHHHHHHTTTCCEEE
T ss_pred cCCe-EEEEEECCCCCCcccCCH---HHHHHHHHHcCCeEEE
Confidence 23 333322222334555542 6777789999998887
No 138
>3gk7_A 4-hydroxybutyrate COA-transferase; alpha/beta protein; HET: SPD; 1.85A {Clostridium aminobutyricum} PDB: 3qdq_A*
Probab=45.15 E-value=43 Score=36.52 Aligned_cols=96 Identities=18% Similarity=0.174 Sum_probs=59.0
Q ss_pred HHHHHhccCCCEEEeecCcHH---HHHHHHHHHHcCCeeEEEEcCC-C------C----------CchHHHHHHHHHhCC
Q 006577 446 KHAVTKIRDGDVLLTYGSSSA---VEMILQHAHELGKQFRVVIVDS-R------P----------KHEGKLLLRRLVRKG 505 (640)
Q Consensus 446 ~~a~~~I~dgdvILT~g~Sst---V~~vL~~A~e~Gk~f~ViV~ES-R------P----------~~eG~~La~eL~~~G 505 (640)
+.|+.+|++|++|..++..+. +...|.+..++=++++++..=+ . | ++-|.. .+++.+.|
T Consensus 15 eeA~~~ik~G~~v~~~~~~~~p~~l~~al~~~~~~l~~v~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-~r~~i~~G 93 (448)
T 3gk7_A 15 DEAVKSIKSGDRVLFAHCVAEPPVLVEAMVANAAAYKNVTVSHMVTLGKGEYSKPEYKENFTFEGWFTSPS-TRGSIAEG 93 (448)
T ss_dssp HHHGGGCCTTCEEEECSGGGCCHHHHHHHHHTGGGCSSEEEEESSCSSCCGGGSGGGTTTEEEEESSCCTT-THHHHHHT
T ss_pred HHHHHhCCCcCEEEECCCCCCHHHHHHHHHHHHHhhcCeEEEEeeccCCccccChHHhCcEEEecCcCCHH-HHhHHhCC
Confidence 346679999999999886653 3333332222235677775411 1 1 222222 24445555
Q ss_pred -CceEEEechHHHHHhh----hccEEEEcceeEecCCCeecc
Q 006577 506 -LSCTYTHINAISYIIH----EVTRVFLGASSVLSNGTVCSR 542 (640)
Q Consensus 506 -I~vTlI~DsAv~~iM~----~VdkVlvGADaIlaNG~VvNK 542 (640)
++.+-+..+.+..++. .+|..|+.|...-.+|.+.-.
T Consensus 94 ~~~~~p~~ls~~p~~~~~g~~~~DVAli~as~~D~~Gn~s~g 135 (448)
T 3gk7_A 94 HGQFVPVFFHEVPSLIRKDIFHVDVFMVMVSPPDHNGFCCVG 135 (448)
T ss_dssp SSEECCCCGGGHHHHHHTTTTCCSEEEEEECCCCTTSEEECC
T ss_pred CeeEECchHHhHHHHHHhCCCCCCEEEEEEecCCCCCcEEec
Confidence 3333355677877777 489999999999999988643
No 139
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=44.76 E-value=1.6e+02 Score=26.21 Aligned_cols=61 Identities=11% Similarity=0.213 Sum_probs=35.6
Q ss_pred HHHHhCCCc-eEEEe--chHHHHHhh-----hccEEEEcceeEecCCCeec-ccchHHHHHHHhhCCCcEEEec
Q 006577 499 RRLVRKGLS-CTYTH--INAISYIIH-----EVTRVFLGASSVLSNGTVCS-RVGTACVAMVAYGFHIPVLVCC 563 (640)
Q Consensus 499 ~eL~~~GI~-vTlI~--DsAv~~iM~-----~VdkVlvGADaIlaNG~VvN-KiGT~~lAlaAk~~~VPVyV~a 563 (640)
..|.+.|++ +.... ....-.++. ++|+|++|+..- |.+-. -.|+..--+ .++-.+||+|+-
T Consensus 88 ~~~~~~gv~~v~~~v~~G~~~~~I~~~a~~~~~DLIV~G~~g~---~~~~~~~lGSva~~v-l~~a~~PVlvV~ 157 (163)
T 1tq8_A 88 ERAHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGL---STIAGRLLGSVPANV-SRRAKVDVLIVH 157 (163)
T ss_dssp HHHHTTTCCEEEEEEECSSHHHHHHHHHHHTTCSEEEEECCCC---CSHHHHHTBBHHHHH-HHHTTCEEEEEC
T ss_pred HHHHHcCCCeEEEEEecCCHHHHHHHHHHhcCCCEEEECCCCC---CcccceeeccHHHHH-HHhCCCCEEEEe
Confidence 345567888 65433 333333333 699999999743 22211 246554444 445679999973
No 140
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Probab=44.71 E-value=40 Score=30.33 Aligned_cols=104 Identities=10% Similarity=0.127 Sum_probs=59.4
Q ss_pred CEEEeecCcHHHHH-HHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEE--ec-hHHHHHhhhccEEEEcce
Q 006577 456 DVLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT--HI-NAISYIIHEVTRVFLGAS 531 (640)
Q Consensus 456 dvILT~g~SstV~~-vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI--~D-sAv~~iM~~VdkVlvGAD 531 (640)
.+||..|-++.+-. +++.+.++| .+|+++.-++... ..+...++.+... .| ..+..+++++|.||.-|-
T Consensus 4 ~~ilVtGatG~iG~~l~~~l~~~g--~~V~~~~r~~~~~-----~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~ 76 (206)
T 1hdo_A 4 KKIAIFGATGQTGLTTLAQAVQAG--YEVTVLVRDSSRL-----PSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLG 76 (206)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTT--CEEEEEESCGGGS-----CSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCC
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCC--CeEEEEEeChhhc-----ccccCCceEEEEecCCCHHHHHHHHcCCCEEEECcc
Confidence 57888888776644 455566666 5677665443210 0111223332221 12 356677788888886653
Q ss_pred eEec-CCCeecccchHHHHHHHhhCCCcEEEecccc
Q 006577 532 SVLS-NGTVCSRVGTACVAMVAYGFHIPVLVCCEAY 566 (640)
Q Consensus 532 aIla-NG~VvNKiGT~~lAlaAk~~~VPVyV~aety 566 (640)
.... +-.-+|-.|+..+.-+|+.+++.-+|...+.
T Consensus 77 ~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~Ss~ 112 (206)
T 1hdo_A 77 TRNDLSPTTVMSEGARNIVAAMKAHGVDKVVACTSA 112 (206)
T ss_dssp CTTCCSCCCHHHHHHHHHHHHHHHHTCCEEEEECCG
T ss_pred CCCCCCccchHHHHHHHHHHHHHHhCCCeEEEEeee
Confidence 2111 1123567789998888888888766654443
No 141
>3rss_A Putative uncharacterized protein; unknown function, ADP/ATP-dependent NAD(P)H-hydrate dehydrat lyase; HET: NAP; 1.95A {Thermotoga maritima} PDB: 3rrb_A* 2ax3_A* 3rre_A* 3rrj_A* 3rs8_A* 3rs9_A* 3rsf_A* 3rsg_A* 3rrf_A* 3rsq_A* 3rt7_A* 3rt9_A* 3rta_A* 3rtb_A* 3rtc_A* 3rtd_A* 3rte_A* 3rtg_A* 3ru2_A* 3ru3_A*
Probab=44.40 E-value=1.7e+02 Score=32.05 Aligned_cols=117 Identities=12% Similarity=0.058 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHhcc--CCCEEEeecCcHH----HHHHHHHHHHcCCeeEEEEcCCCCCch-HHHHHHHHHhCCCceEEE
Q 006577 439 LADRVIVKHAVTKIR--DGDVLLTYGSSSA----VEMILQHAHELGKQFRVVIVDSRPKHE-GKLLLRRLVRKGLSCTYT 511 (640)
Q Consensus 439 ~A~~~Ia~~a~~~I~--dgdvILT~g~Sst----V~~vL~~A~e~Gk~f~ViV~ESRP~~e-G~~La~eL~~~GI~vTlI 511 (640)
.|-..+++...+.+. .+..|+.+|-.+. -.-+-+.+++.|.+.+||++... ..+ -+.-...|.+.|+++.
T Consensus 34 ~Ag~a~a~~i~~~~~~~~~~~v~VlcG~GNNGGDGlv~AR~L~~~G~~V~v~~~~~~-~~~~~~~~~~~~~~~g~~~~-- 110 (502)
T 3rss_A 34 RAGISVVLAMEEELGNLSDYRFLVLCGGGNNGGDGFVVARNLLGVVKDVLVVFLGKK-KTPDCEYNYGLYKKFGGKVV-- 110 (502)
T ss_dssp HHHHHHHHHHHHHHSCCTTCEEEEEECSSHHHHHHHHHHHHHTTTSSEEEEEECCSS-CCHHHHHHHHHHHHTTCCEE--
T ss_pred HHHHHHHHHHHHhcCccCCCEEEEEECCCCCHHHHHHHHHHHHHCCCeEEEEEECCC-CCHHHHHHHHHHHhCCCcee--
Confidence 355556666665554 4567888875532 33344666667888888877544 322 2233467888898875
Q ss_pred echHHHHHhhhccEEEEcceeEecCCCeecccchHHHHH-HHhhCCCcEEEe
Q 006577 512 HINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAM-VAYGFHIPVLVC 562 (640)
Q Consensus 512 ~DsAv~~iM~~VdkVlvGADaIlaNG~VvNKiGT~~lAl-aAk~~~VPVyV~ 562 (640)
. ......+...|.|| |+|+--|--=.--|-+.-.+ ..+..+.||+-+
T Consensus 111 ~-~~~~~~~~~~dliV---DalfG~Gl~~~l~~~~~~~i~~iN~~~~~vvAv 158 (502)
T 3rss_A 111 E-QFEPSILNEFDVVV---DAIFGTGLRGEITGEYAEIINLVNKSGKVVVSV 158 (502)
T ss_dssp S-CCCGGGGGGCSEEE---EESCSTTCCSCCCHHHHHHHHHHHTTCCEEEEE
T ss_pred c-ccccccCCCCCEEE---EeCccCCCCCCCcHHHHHHHHHHHcCCCCEEEe
Confidence 1 11112345678764 77876663222234443333 334567776643
No 142
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=44.37 E-value=75 Score=26.77 Aligned_cols=80 Identities=13% Similarity=0.159 Sum_probs=47.5
Q ss_pred eeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHH--HHHhh--hccEEEEcceeEecCCCeecccchHHHHHHHhhC
Q 006577 480 QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAI--SYIIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGF 555 (640)
Q Consensus 480 ~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv--~~iM~--~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~ 555 (640)
..+|+|+|..+.. ...+...|.+.|+.|....+..- ..+-. ..|.||+..+ +.+| .-|.-.+..+-+..
T Consensus 5 ~~~ilivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~--l~~~----~~g~~~~~~l~~~~ 77 (140)
T 3h5i_A 5 DKKILIVEDSKFQ-AKTIANILNKYGYTVEIALTGEAAVEKVSGGWYPDLILMDIE--LGEG----MDGVQTALAIQQIS 77 (140)
T ss_dssp -CEEEEECSCHHH-HHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCSEEEEESS--CSSS----CCHHHHHHHHHHHC
T ss_pred CcEEEEEeCCHHH-HHHHHHHHHHcCCEEEEecChHHHHHHHhcCCCCCEEEEecc--CCCC----CCHHHHHHHHHhCC
Confidence 4578888777653 23345677778888776654432 22322 4788888653 2221 23444444555557
Q ss_pred CCcEEEecccc
Q 006577 556 HIPVLVCCEAY 566 (640)
Q Consensus 556 ~VPVyV~aety 566 (640)
++|+++++...
T Consensus 78 ~~~ii~ls~~~ 88 (140)
T 3h5i_A 78 ELPVVFLTAHT 88 (140)
T ss_dssp CCCEEEEESSS
T ss_pred CCCEEEEECCC
Confidence 89999987653
No 143
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=44.20 E-value=61 Score=26.62 Aligned_cols=77 Identities=16% Similarity=0.291 Sum_probs=44.4
Q ss_pred EEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHH-Hhh--hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCc
Q 006577 482 RVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISY-IIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIP 558 (640)
Q Consensus 482 ~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~-iM~--~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VP 558 (640)
+|.++|..|.. ...+...|...|+.|....+..-+. .+. ..|.||+..+ +.++ -|--.+..+-+.+++|
T Consensus 4 ~ilivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlii~D~~--~p~~-----~g~~~~~~lr~~~~~~ 75 (120)
T 3f6p_A 4 KILVVDDEKPI-ADILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDLILLDIM--LPNK-----DGVEVCREVRKKYDMP 75 (120)
T ss_dssp EEEEECSCHHH-HHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCSEEEEETT--STTT-----HHHHHHHHHHTTCCSC
T ss_pred eEEEEECCHHH-HHHHHHHHHhCCEEEEEeCCHHHHHHHHhhCCCCEEEEeCC--CCCC-----CHHHHHHHHHhcCCCC
Confidence 57777766543 2234466777787776555433222 122 5788887543 3332 3545555555667899
Q ss_pred EEEecccc
Q 006577 559 VLVCCEAY 566 (640)
Q Consensus 559 VyV~aety 566 (640)
+++++...
T Consensus 76 ii~~t~~~ 83 (120)
T 3f6p_A 76 IIMLTAKD 83 (120)
T ss_dssp EEEEEESS
T ss_pred EEEEECCC
Confidence 99986543
No 144
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}
Probab=44.20 E-value=22 Score=34.47 Aligned_cols=98 Identities=9% Similarity=0.102 Sum_probs=51.1
Q ss_pred CEEEeecCcHHHHH-HHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEe--c-hHHHHHhhh-ccEEEEcc
Q 006577 456 DVLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH--I-NAISYIIHE-VTRVFLGA 530 (640)
Q Consensus 456 dvILT~g~SstV~~-vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~--D-sAv~~iM~~-VdkVlvGA 530 (640)
.+||..| ++.+-. ++..+.++| ++|+++.-++.. ...++.+...- | ..+..++.. +|.||--|
T Consensus 4 ~~ilVtG-aG~iG~~l~~~L~~~g--~~V~~~~r~~~~---------~~~~~~~~~~Dl~d~~~~~~~~~~~~d~vih~a 71 (286)
T 3gpi_A 4 SKILIAG-CGDLGLELARRLTAQG--HEVTGLRRSAQP---------MPAGVQTLIADVTRPDTLASIVHLRPEILVYCV 71 (286)
T ss_dssp CCEEEEC-CSHHHHHHHHHHHHTT--CCEEEEECTTSC---------CCTTCCEEECCTTCGGGCTTGGGGCCSEEEECH
T ss_pred CcEEEEC-CCHHHHHHHHHHHHCC--CEEEEEeCCccc---------cccCCceEEccCCChHHHHHhhcCCCCEEEEeC
Confidence 3566667 555543 334444555 455555433322 01333332211 1 233344554 78877655
Q ss_pred eeEecC---CCeecccchHHHHHHHhhCCCcEEEeccc
Q 006577 531 SSVLSN---GTVCSRVGTACVAMVAYGFHIPVLVCCEA 565 (640)
Q Consensus 531 DaIlaN---G~VvNKiGT~~lAlaAk~~~VPVyV~aet 565 (640)
-....+ -.-+|-.||..+.-+|+..++.-+|.+.+
T Consensus 72 ~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~~~v~~SS 109 (286)
T 3gpi_A 72 AASEYSDEHYRLSYVEGLRNTLSALEGAPLQHVFFVSS 109 (286)
T ss_dssp HHHHHC-----CCSHHHHHHHHHHTTTSCCCEEEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEcc
Confidence 211111 11247789999999999999876665544
No 145
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=43.97 E-value=83 Score=27.62 Aligned_cols=56 Identities=13% Similarity=0.227 Sum_probs=39.1
Q ss_pred EEEeecCc-HHHHHHHHHHHHcCCeeEEEEcCCCCC-chHHHHHHHHHhCCCceEEEe
Q 006577 457 VLLTYGSS-SAVEMILQHAHELGKQFRVVIVDSRPK-HEGKLLLRRLVRKGLSCTYTH 512 (640)
Q Consensus 457 vILT~g~S-stV~~vL~~A~e~Gk~f~ViV~ESRP~-~eG~~La~eL~~~GI~vTlI~ 512 (640)
.|.++..+ ..+...|..|.++|.+++|++....-. .......+.|.+.|+++.+..
T Consensus 31 ~i~~~~~~~~~i~~aL~~a~~rGV~Vril~~~~~~~~~~~~~~~~~L~~~gv~v~~~~ 88 (155)
T 1byr_A 31 RMMAYSFTAPDIMKALVAAKKRGVDVKIVIDERGNTGRASIAAMNYIANSGIPLRTDS 88 (155)
T ss_dssp EEEESSBCCHHHHHHHHHHHHTTCEEEEEEESTTCCSHHHHHHHHHHHHTTCCEEEEC
T ss_pred EEEEEEeCCHHHHHHHHHHHHCCCEEEEEEeCccccccccHHHHHHHHHCCCeEEEcC
Confidence 35555443 457777888889999999988765432 234556688999999987753
No 146
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=43.65 E-value=7.6 Score=40.28 Aligned_cols=75 Identities=16% Similarity=0.244 Sum_probs=45.9
Q ss_pred hccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEcc
Q 006577 451 KIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA 530 (640)
Q Consensus 451 ~I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGA 530 (640)
.+..|.+|+..|.......+++.|++.| ++|++++..|...+..++ +.-+...+....++-.+.+++|.|..+-
T Consensus 10 ~~~~~k~IlIlG~G~~g~~la~aa~~~G--~~vi~~d~~~~~~~~~~a----d~~~~~~~~d~~~l~~~~~~~dvI~~~~ 83 (389)
T 3q2o_A 10 IILPGKTIGIIGGGQLGRMMALAAKEMG--YKIAVLDPTKNSPCAQVA----DIEIVASYDDLKAIQHLAEISDVVTYEF 83 (389)
T ss_dssp CCCTTSEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSTTCTTTTTC----SEEEECCTTCHHHHHHHHHTCSEEEESC
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEeCCCCCchHHhC----CceEecCcCCHHHHHHHHHhCCEeeecc
Confidence 3457889999999988888888888766 678888876654433221 1111111111224555566777776664
Q ss_pred e
Q 006577 531 S 531 (640)
Q Consensus 531 D 531 (640)
+
T Consensus 84 e 84 (389)
T 3q2o_A 84 E 84 (389)
T ss_dssp C
T ss_pred c
Confidence 4
No 147
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=43.62 E-value=59 Score=31.89 Aligned_cols=70 Identities=16% Similarity=0.212 Sum_probs=44.3
Q ss_pred EEEeecCcHHHHHHHHHHHHcCCeeEEEEcCC-CCCchHHHHHHHHHhCCCceEEEe----------chHHHHHhh--hc
Q 006577 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDS-RPKHEGKLLLRRLVRKGLSCTYTH----------INAISYIIH--EV 523 (640)
Q Consensus 457 vILT~g~SstV~~vL~~A~e~Gk~f~ViV~ES-RP~~eG~~La~eL~~~GI~vTlI~----------DsAv~~iM~--~V 523 (640)
.||.-|+.+....+|....+ |..++|.++=| +|...|.+.| .+.||++.++. |..+...++ ++
T Consensus 9 avl~SG~Gsnl~all~~~~~-~~~~eI~~Vis~~~~a~~~~~A---~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~ 84 (215)
T 3tqr_A 9 VVLISGNGTNLQAIIGAIQK-GLAIEIRAVISNRADAYGLKRA---QQADIPTHIIPHEEFPSRTDFESTLQKTIDHYDP 84 (215)
T ss_dssp EEEESSCCHHHHHHHHHHHT-TCSEEEEEEEESCTTCHHHHHH---HHTTCCEEECCGGGSSSHHHHHHHHHHHHHTTCC
T ss_pred EEEEeCCcHHHHHHHHHHHc-CCCCEEEEEEeCCcchHHHHHH---HHcCCCEEEeCccccCchhHhHHHHHHHHHhcCC
Confidence 35555777777777665543 45556554444 7777775544 35799998864 344555555 58
Q ss_pred cEEEEcc
Q 006577 524 TRVFLGA 530 (640)
Q Consensus 524 dkVlvGA 530 (640)
|.+++.+
T Consensus 85 Dliv~ag 91 (215)
T 3tqr_A 85 KLIVLAG 91 (215)
T ss_dssp SEEEESS
T ss_pred CEEEEcc
Confidence 8888765
No 148
>3eh7_A 4-hydroxybutyrate COA-transferase; citrate lyase, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Porphyromonas gingivalis}
Probab=43.58 E-value=46 Score=36.01 Aligned_cols=94 Identities=12% Similarity=0.103 Sum_probs=52.1
Q ss_pred HHHHhccCCCEEEeecCcHHHHHHHHHHHHc---CCeeEEEEcCC-CC----------------CchHHHHHHHHHhCC-
Q 006577 447 HAVTKIRDGDVLLTYGSSSAVEMILQHAHEL---GKQFRVVIVDS-RP----------------KHEGKLLLRRLVRKG- 505 (640)
Q Consensus 447 ~a~~~I~dgdvILT~g~SstV~~vL~~A~e~---Gk~f~ViV~ES-RP----------------~~eG~~La~eL~~~G- 505 (640)
.|+++|++|++|.+.+..+.-..++....++ =++++++..-+ .+ ++.|..+ +++.+.|
T Consensus 20 EAv~~IkdGd~V~~~g~~g~P~~L~~ALa~r~~~l~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-r~~i~~G~ 98 (434)
T 3eh7_A 20 EAVKHIKNGERVALSHAAGVPQSCVDALVQQADLFQNVEIYHMLCLGEGKYMAPEMAPHFRHITNFVGGNS-RKAVEENR 98 (434)
T ss_dssp HHHTTCCTTCEEEECCGGGCCHHHHHHHHHSTTTC--CEEECCBCTTCC------------------------------C
T ss_pred HHHHhCCCcCEEEECCccCCHHHHHHHHHHhHhhcCCeEEEEeccCCchhhcChhhhCeEEEecCcCCHHH-HHHHHCCC
Confidence 4567899999999998665433344333332 24566664321 11 1222221 2333344
Q ss_pred CceEEEechHHHHHhh----hccEEEEcceeEecCCCeec
Q 006577 506 LSCTYTHINAISYIIH----EVTRVFLGASSVLSNGTVCS 541 (640)
Q Consensus 506 I~vTlI~DsAv~~iM~----~VdkVlvGADaIlaNG~VvN 541 (640)
++..-+..+.+..++. .+|..|+.+...-.+|.+.-
T Consensus 99 ~~~~p~~ls~~~~~~~~g~~~~DVAli~as~~D~~Gn~s~ 138 (434)
T 3eh7_A 99 ADFIPVFFYEVPSMIRKDILHIDVAIVQLSMPDENGYCSF 138 (434)
T ss_dssp TTCCCCCGGGHHHHHHTTSSCCSEEEEEECCCCTTSEEEC
T ss_pred ccccChhHHHHHHHHHhCCCCCcEEEEEEecCCCCCCEEe
Confidence 4444445677777776 58999999999999999864
No 149
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*
Probab=43.52 E-value=1.3e+02 Score=31.94 Aligned_cols=98 Identities=14% Similarity=0.090 Sum_probs=53.3
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHH-H-HHHhCCCceEEEech---HHHHHhhh-c-cEEEE
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL-R-RLVRKGLSCTYTHIN---AISYIIHE-V-TRVFL 528 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La-~-eL~~~GI~vTlI~Ds---Av~~iM~~-V-dkVlv 528 (640)
+.|++-+.+..+..+|....+.| -+|++.+ |.+.|..-. . .+...|+.++++... .+...+.. . ..|++
T Consensus 131 ~~v~~~sG~~Ai~~al~~l~~~G--d~Vi~~~--~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~ai~~~tv~lV~l 206 (445)
T 1qgn_A 131 STLLMASGMCASTVMLLALVPAG--GHIVTTT--DCYRKTRIFIETILPKMGITATVIDPADVGALELALNQKKVNLFFT 206 (445)
T ss_dssp EEEEESCHHHHHHHHHHHHSCSS--CEEEEET--TSCHHHHHHHHHTGGGGTCEEEEECSSCHHHHHHHHHHSCEEEEEE
T ss_pred cEEEeCCHHHHHHHHHHHHhCCC--CEEEEcC--CCchhHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHhccCCCCEEEE
Confidence 44554333444444555443334 3666655 667664322 2 356789999988632 33344443 3 34444
Q ss_pred cceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 529 GASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 529 GADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
..---..|.+.. --.|+-+|++|+++|+|
T Consensus 207 -e~p~NptG~v~d---l~~I~~la~~~g~~liv 235 (445)
T 1qgn_A 207 -ESPTNPFLRCVD---IELVSKLCHEKGALVCI 235 (445)
T ss_dssp -ESSCTTTCCCCC---HHHHHHHHHHTTCEEEE
T ss_pred -eCCCCCCCcccC---HHHHHHHHHHcCCEEEE
Confidence 222122344432 34677889999998876
No 150
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=43.39 E-value=77 Score=28.86 Aligned_cols=97 Identities=12% Similarity=0.076 Sum_probs=58.4
Q ss_pred EEEeecCcHHHHH-HHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEE--echHHHHHhhhccEEEEcceeE
Q 006577 457 VLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT--HINAISYIIHEVTRVFLGASSV 533 (640)
Q Consensus 457 vILT~g~SstV~~-vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI--~DsAv~~iM~~VdkVlvGADaI 533 (640)
+||..|-++.+=. +++.+.++| ++|+++.-++.. ...|. .++.+... .|... ..+..+|.||.-|-..
T Consensus 2 kvlVtGatG~iG~~l~~~L~~~g--~~V~~~~R~~~~-----~~~~~-~~~~~~~~D~~d~~~-~~~~~~d~vi~~ag~~ 72 (221)
T 3ew7_A 2 KIGIIGATGRAGSRILEEAKNRG--HEVTAIVRNAGK-----ITQTH-KDINILQKDIFDLTL-SDLSDQNVVVDAYGIS 72 (221)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCSHH-----HHHHC-SSSEEEECCGGGCCH-HHHTTCSEEEECCCSS
T ss_pred eEEEEcCCchhHHHHHHHHHhCC--CEEEEEEcCchh-----hhhcc-CCCeEEeccccChhh-hhhcCCCEEEECCcCC
Confidence 5788887766544 445566666 577777554421 22232 45544332 23323 6678899988766442
Q ss_pred ecCCCeecccchHHHHHHHhhCCCcEEEec
Q 006577 534 LSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (640)
Q Consensus 534 laNG~VvNKiGT~~lAlaAk~~~VPVyV~a 563 (640)
.+..-.|-.||..+.-+|+..+++-+|..
T Consensus 73 -~~~~~~~~~~~~~l~~a~~~~~~~~~v~~ 101 (221)
T 3ew7_A 73 -PDEAEKHVTSLDHLISVLNGTVSPRLLVV 101 (221)
T ss_dssp -TTTTTSHHHHHHHHHHHHCSCCSSEEEEE
T ss_pred -ccccchHHHHHHHHHHHHHhcCCceEEEE
Confidence 22244577889999999999876655543
No 151
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=43.38 E-value=1e+02 Score=30.42 Aligned_cols=97 Identities=15% Similarity=0.057 Sum_probs=56.8
Q ss_pred EEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEec--------hHHHHHhh--hccEE
Q 006577 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--------NAISYIIH--EVTRV 526 (640)
Q Consensus 457 vILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D--------sAv~~iM~--~VdkV 526 (640)
+++|.|-+..+..+++.+.+.| -+|++.+ +.+-|..+...+...|+.+..+.. ..+-..+. ++..|
T Consensus 77 v~~~~gg~~al~~~~~~~~~~g--d~vl~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v 152 (393)
T 3kgw_A 77 LVVSGSGHCAMETALFNLLEPG--DSFLTGT--NGIWGMRAAEIADRIGARVHQMIKKPGEHYTLQEVEEGLAQHKPVLL 152 (393)
T ss_dssp EEESCCTTTHHHHHHHHHCCTT--CEEEEEE--SSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEE
T ss_pred EEEeCCcHHHHHHHHHhcCCCC--CEEEEEe--CCchhHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHhhCCCcEE
Confidence 6677777777777777664434 3566553 444454555666677888777652 22333343 45555
Q ss_pred EEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 527 FLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 527 lvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
++- .-=-..|.+.. --.|+-+|+.|++.+++
T Consensus 153 ~~~-~~~nptG~~~~---l~~i~~l~~~~~~~li~ 183 (393)
T 3kgw_A 153 FLV-HGESSTGVVQP---LDGFGELCHRYQCLLLV 183 (393)
T ss_dssp EEE-SEETTTTEECC---CTTHHHHHHHTTCEEEE
T ss_pred EEe-ccCCcchhhcc---HHHHHHHHHHcCCEEEE
Confidence 443 22233454444 23577789999998876
No 152
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=43.16 E-value=85 Score=27.41 Aligned_cols=93 Identities=8% Similarity=0.088 Sum_probs=0.0
Q ss_pred CCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHH----hhhccEEEEcc
Q 006577 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYI----IHEVTRVFLGA 530 (640)
Q Consensus 455 gdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~i----M~~VdkVlvGA 530 (640)
.+.|+..|+...-..+.+.+.+.| +.|+++|..| ..+..|.+.|+++.+--......+ +.++|.||+..
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~g--~~v~vid~~~-----~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~ 79 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLASD--IPLVVIETSR-----TRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTI 79 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTT--CCEEEEESCH-----HHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECC
T ss_pred CCCEEEECcCHHHHHHHHHHHHCC--CCEEEEECCH-----HHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEEC
Q ss_pred eeEecCCCeecccchHHHHHHHhhCCCcEEEec
Q 006577 531 SSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (640)
Q Consensus 531 DaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~a 563 (640)
.. ..-+..+++.|+..+--..+++
T Consensus 80 ~~---------~~~n~~~~~~a~~~~~~~~iia 103 (140)
T 3fwz_A 80 PN---------GYEAGEIVASARAKNPDIEIIA 103 (140)
T ss_dssp SC---------HHHHHHHHHHHHHHCSSSEEEE
T ss_pred CC---------hHHHHHHHHHHHHHCCCCeEEE
No 153
>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A
Probab=43.12 E-value=2.1e+02 Score=26.76 Aligned_cols=35 Identities=6% Similarity=-0.156 Sum_probs=29.0
Q ss_pred HHHHHHHHHhCCCceEEEechHHHHHhhhccEEEE
Q 006577 494 GKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFL 528 (640)
Q Consensus 494 G~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlv 528 (640)
=.++++.+.+.|+++..|+++.-+.+.+.+|.+|.
T Consensus 147 ~i~~~~~ak~~G~~vIaIT~~~~s~La~~aD~~l~ 181 (212)
T 2i2w_A 147 VIKAIAAAREKGMKVITLTGKDGGKMAGTADIEIR 181 (212)
T ss_dssp HHHHHHHHHHHTCEEEEEEETTCGGGTTCSSEEEE
T ss_pred HHHHHHHHHHCCCeEEEEECCCCCchHHhCCEEEE
Confidence 34566888889999999999887778888998876
No 154
>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*
Probab=42.93 E-value=1.4e+02 Score=29.89 Aligned_cols=101 Identities=16% Similarity=0.096 Sum_probs=52.2
Q ss_pred CCEEE--eecCcHHHHHHHHHHHH--cCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEec----------hHHHHHh
Q 006577 455 GDVLL--TYGSSSAVEMILQHAHE--LGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI----------NAISYII 520 (640)
Q Consensus 455 gdvIL--T~g~SstV~~vL~~A~e--~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D----------sAv~~iM 520 (640)
..+++ |.|-+..+..+++.+.. .|. +|++. .|.+.|.... +...|..+..+.. ..+-..+
T Consensus 90 ~~v~~~~~~g~~~a~~~~~~~~~~~~~gd--~vl~~--~p~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l 163 (394)
T 2ay1_A 90 ETTATLATVGGTGALRQALELARMANPDL--RVFVS--DPTWPNHVSI--MNFMGLPVQTYRYFDAETRGVDFEGMKADL 163 (394)
T ss_dssp GGEEEEEEEHHHHHHHHHHHHHHHHCTTC--CEEEE--ESCCHHHHHH--HHHHTCCEEEEECEETTTTEECHHHHHHHH
T ss_pred ccEEEEecCCchhHHHHHHHHHHhcCCCC--EEEEc--CCCChhHHHH--HHHcCCceEEEecccccCCccCHHHHHHHH
Confidence 45566 77766666666655443 343 45554 4667665433 3345777666542 1233333
Q ss_pred hh---ccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 521 HE---VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 521 ~~---VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
.+ .+++++=...--..|.++..-=-..++-+|++|++.+++
T Consensus 164 ~~~~~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~ 207 (394)
T 2ay1_A 164 AAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLI 207 (394)
T ss_dssp HTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 32 245544333222334433322122466678889987776
No 155
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=42.82 E-value=1.1e+02 Score=28.26 Aligned_cols=37 Identities=22% Similarity=0.017 Sum_probs=30.4
Q ss_pred HHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEcc
Q 006577 494 GKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA 530 (640)
Q Consensus 494 G~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGA 530 (640)
=.++++.+.+.|+++..|+++.-+.+-+.+|.+|.-.
T Consensus 108 ~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l~~~ 144 (201)
T 3fxa_A 108 LLNLIPACKTKGSTLIGVTENPDSVIAKEADIFFPVS 144 (201)
T ss_dssp HHTTHHHHHHHTCEEEEEESCTTSHHHHHCSEEEECC
T ss_pred HHHHHHHHHHcCCeEEEEECCCCChhHHhCCEEEEcC
Confidence 3445688888999999999998888888899998643
No 156
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=42.45 E-value=54 Score=33.22 Aligned_cols=21 Identities=14% Similarity=0.252 Sum_probs=15.9
Q ss_pred HHHHHHhhCCCcEEEeccccc
Q 006577 547 CVAMVAYGFHIPVLVCCEAYK 567 (640)
Q Consensus 547 ~lAlaAk~~~VPVyV~aetyK 567 (640)
...++|+..+||++.+...+-
T Consensus 131 ~~~~aA~~~giP~v~~~~~~~ 151 (415)
T 3rsc_A 131 AGQLLAARWRRPAVRLSAAFA 151 (415)
T ss_dssp HHHHHHHHTTCCEEEEESSCC
T ss_pred HHHHHHHHhCCCEEEEEeccc
Confidence 346778999999998875543
No 157
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=42.44 E-value=1.6e+02 Score=28.96 Aligned_cols=99 Identities=9% Similarity=0.024 Sum_probs=54.8
Q ss_pred CCEEEeecCcHHHHHHHHHHH---HcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEec---------hHHHHHhh-
Q 006577 455 GDVLLTYGSSSAVEMILQHAH---ELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI---------NAISYIIH- 521 (640)
Q Consensus 455 gdvILT~g~SstV~~vL~~A~---e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D---------sAv~~iM~- 521 (640)
..+++|-|.+..+..++..+. +.| -+|++.++ |.+.+ .+...+...|+.+..+.- ..+-..+.
T Consensus 60 ~~v~~~~g~t~al~~~~~~~~~~~~~g--d~vlv~~~-~~~~~-~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~ 135 (385)
T 2bkw_A 60 QPFVLAGSGTLGWDIFASNFILSKAPN--KNVLVVST-GTFSD-RFADCLRSYGAQVDVVRPLKIGESVPLELITEKLSQ 135 (385)
T ss_dssp EEEEEESCTTHHHHHHHHHHSCTTCSC--CEEEEECS-SHHHH-HHHHHHHHTTCEEEEECCSSTTSCCCHHHHHHHHHH
T ss_pred ceEEEcCchHHHHHHHHHHHhccCCCC--CeEEEEcC-CcchH-HHHHHHHHcCCceEEEecCCCCCCCCHHHHHHHHhc
Confidence 356777777777776666553 333 36666644 23222 223445567888777642 12333343
Q ss_pred -hccEEEEcceeEecCCCeecccchHHHHHHHhhC--CCcEEE
Q 006577 522 -EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGF--HIPVLV 561 (640)
Q Consensus 522 -~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~--~VPVyV 561 (640)
++..|++- ..-...|.+.. --.|+-+|++| ++.+++
T Consensus 136 ~~~~~v~~~-~~~nptG~~~~---l~~i~~~~~~~~~~~~li~ 174 (385)
T 2bkw_A 136 NSYGAVTVT-HVDTSTAVLSD---LKAISQAIKQTSPETFFVV 174 (385)
T ss_dssp SCCSEEEEE-SEETTTTEECC---HHHHHHHHHHHCTTSEEEE
T ss_pred CCCCEEEEE-ccCCCcCeEcC---HHHHHHHHHhhCCCCEEEE
Confidence 35555542 22223355543 34677788888 887776
No 158
>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae}
Probab=42.41 E-value=1e+02 Score=33.72 Aligned_cols=112 Identities=15% Similarity=0.242 Sum_probs=68.6
Q ss_pred ccCCCEEEeecCcHHHHH-HHHHHHHcCCeeEEEEcCCCC-Cch-HHHHHHHHHhCCCceEEEe-c----hHHHHHhhh-
Q 006577 452 IRDGDVLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRP-KHE-GKLLLRRLVRKGLSCTYTH-I----NAISYIIHE- 522 (640)
Q Consensus 452 I~dgdvILT~g~SstV~~-vL~~A~e~Gk~f~ViV~ESRP-~~e-G~~La~eL~~~GI~vTlI~-D----sAv~~iM~~- 522 (640)
+..+.+||..|-++.+-. +.+...++|.. +|+++.-++ ..+ -.++..+|.+.|..++++. | .++..++.+
T Consensus 256 ~~~~~~vLITGgtGgIG~~lA~~La~~G~~-~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~~ 334 (511)
T 2z5l_A 256 WQPSGTVLITGGMGAIGRRLARRLAAEGAE-RLVLTSRRGPEAPGAAELAEELRGHGCEVVHAACDVAERDALAALVTAY 334 (511)
T ss_dssp CCCCSEEEEETTTSHHHHHHHHHHHHTTCS-EEEEEESSGGGSTTHHHHHHHHHTTTCEEEEEECCSSCHHHHHHHHHHS
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHhCCCc-EEEEEecCCcccHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHhcC
Confidence 345677888787766544 44555555542 455543332 222 3456688888898887753 3 456666665
Q ss_pred -ccEEEEcceeEecCCCe-------------ecccchHHHHHHHhhC-CCcEEEeccc
Q 006577 523 -VTRVFLGASSVLSNGTV-------------CSRVGTACVAMVAYGF-HIPVLVCCEA 565 (640)
Q Consensus 523 -VdkVlvGADaIlaNG~V-------------vNKiGT~~lAlaAk~~-~VPVyV~aet 565 (640)
+|.||-.|- +..+|.+ .|-.|+..+.-+++.+ +..++|+..+
T Consensus 335 ~ld~VVh~AG-v~~~~~~~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~~~V~~SS 391 (511)
T 2z5l_A 335 PPNAVFHTAG-ILDDAVIDTLSPESFETVRGAKVCGAELLHQLTADIKGLDAFVLFSS 391 (511)
T ss_dssp CCSEEEECCC-CCCCBCGGGCCHHHHHHHHHHHHHHHHHHHHHTSSCTTCCCEEEEEE
T ss_pred CCcEEEECCc-ccCCcccccCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEeC
Confidence 898887773 3344432 2567888887777766 6777766544
No 159
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=42.27 E-value=27 Score=30.98 Aligned_cols=78 Identities=15% Similarity=0.194 Sum_probs=49.8
Q ss_pred CCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEech---HHHHHhh-hccEEEEcceeEecCCCeecccchHHHHHHHh
Q 006577 478 GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN---AISYIIH-EVTRVFLGASSVLSNGTVCSRVGTACVAMVAY 553 (640)
Q Consensus 478 Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds---Av~~iM~-~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk 553 (640)
.++.+|.|+|-.|... ..+...|.+.|+.|+....+ |+..+-. ..|.||+ |-.+.+.+ | +.++-.-+
T Consensus 6 ~r~~rILiVdD~~~~~-~~l~~~L~~~G~~v~~~a~~g~eAl~~~~~~~~Dlvll--Di~mP~~~-----G-~el~~~lr 76 (123)
T 2lpm_A 6 ERRLRVLVVEDESMIA-MLIEDTLCELGHEVAATASRMQEALDIARKGQFDIAII--DVNLDGEP-----S-YPVADILA 76 (123)
T ss_dssp CCCCCEEEESSSTTTS-HHHHHHHHHHCCCCCBCSCCHHHHHHHHHHCCSSEEEE--CSSSSSCC-----S-HHHHHHHH
T ss_pred CCCCEEEEEeCCHHHH-HHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCCCEEEE--ecCCCCCC-----H-HHHHHHHH
Confidence 4678999999888753 23457788889988654433 2222222 5888888 55555432 3 34444456
Q ss_pred hCCCcEEEecc
Q 006577 554 GFHIPVLVCCE 564 (640)
Q Consensus 554 ~~~VPVyV~ae 564 (640)
+.++||++++.
T Consensus 77 ~~~ipvI~lTa 87 (123)
T 2lpm_A 77 ERNVPFIFATG 87 (123)
T ss_dssp HTCCSSCCBCT
T ss_pred cCCCCEEEEec
Confidence 67999988754
No 160
>2ahu_A Putative enzyme YDIF; COA transferase, glutamyl thioester, structural genomi montreal-kingston bacterial structural genomics initiative; 1.90A {Escherichia coli} SCOP: c.124.1.3 c.124.1.2 PDB: 2ahv_A* 2ahw_A*
Probab=42.22 E-value=1.5e+02 Score=32.84 Aligned_cols=44 Identities=14% Similarity=0.020 Sum_probs=34.2
Q ss_pred hccEEEEcceeEecCCCeecccc--h---HHHHHHHhhCCCcEEEeccc
Q 006577 522 EVTRVFLGASSVLSNGTVCSRVG--T---ACVAMVAYGFHIPVLVCCEA 565 (640)
Q Consensus 522 ~VdkVlvGADaIlaNG~VvNKiG--T---~~lAlaAk~~~VPVyV~aet 565 (640)
++|..|+-|...-.+|.+.-... . +.+|++||..+--|+|-++.
T Consensus 180 ~~DVAlI~a~~aD~~Gn~~~~~~~~~~~~~~~a~aAk~~gg~VIveVn~ 228 (531)
T 2ahu_A 180 APDIAFIRATTCDSEGYATFEDEVMYLDALVIAQAVHNNGGIVMMQVQK 228 (531)
T ss_dssp CCSEEEEECSEEETTCCEECTTSSCCTTHHHHHHHHHTTTCEEEEEESE
T ss_pred CCeEEEEEcccCCCCceEEEcCcccccCHHHHHHhHhhcCCEEEEEEcC
Confidence 58999999999999999876532 2 36789999887777775544
No 161
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=42.17 E-value=1.6e+02 Score=29.12 Aligned_cols=99 Identities=14% Similarity=0.064 Sum_probs=56.2
Q ss_pred CCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEec--------hHHHHHhh---hc
Q 006577 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--------NAISYIIH---EV 523 (640)
Q Consensus 455 gdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D--------sAv~~iM~---~V 523 (640)
..+++|.|-+..+..+++.+.+.| -+|++.+ |.+-|..+...+...|+.+..+.- ..+-..++ ++
T Consensus 60 ~~v~~t~g~t~a~~~~~~~~~~~g--d~Vl~~~--~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~ 135 (392)
T 2z9v_A 60 KPVILHGEPVLGLEAAAASLISPD--DVVLNLA--SGVYGKGFGYWAKRYSPHLLEIEVPYNEAIDPQAVADMLKAHPEI 135 (392)
T ss_dssp CCEEESSCTHHHHHHHHHHHCCTT--CCEEEEE--SSHHHHHHHHHHHHHCSCEEEEECCTTSCCCHHHHHHHHHHCTTC
T ss_pred CEEEEeCCchHHHHHHHHHhcCCC--CEEEEec--CCcccHHHHHHHHHcCCceEEeeCCCCCCCCHHHHHHHHhcCCCC
Confidence 467777777777666666654434 3455553 444444333334456888877652 23334442 44
Q ss_pred cEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 524 TRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 524 dkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
..|++ ...-...|.+.. --.|+-+|++|++.+++
T Consensus 136 ~~v~~-~~~~nptG~~~~---l~~i~~l~~~~~~~li~ 169 (392)
T 2z9v_A 136 TVVSV-CHHDTPSGTINP---IDAIGALVSAHGAYLIV 169 (392)
T ss_dssp CEEEE-ESEEGGGTEECC---HHHHHHHHHHTTCEEEE
T ss_pred cEEEE-eccCCCCceecc---HHHHHHHHHHcCCeEEE
Confidence 45544 333333465544 34677789999998776
No 162
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3
Probab=42.06 E-value=1.1e+02 Score=29.89 Aligned_cols=98 Identities=21% Similarity=0.226 Sum_probs=51.5
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEec--------hHHHHHhhh---cc
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--------NAISYIIHE---VT 524 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D--------sAv~~iM~~---Vd 524 (640)
.+++|.|-+..+..++..+.+.|. +|++.+ .+++.. .+...+...|+.+..+.. ..+-..+.+ +.
T Consensus 58 ~v~~~~g~t~a~~~~~~~~~~~gd--~vi~~~-~~~~~~-~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~ 133 (366)
T 1m32_A 58 SVLLQGSGSYAVEAVLGSALGPQD--KVLIVS-NGAYGA-RMVEMAGLMGIAHHAYDCGEVARPDVQAIDAILNADPTIS 133 (366)
T ss_dssp EEEEESCHHHHHHHHHHHSCCTTC--CEEEEE-SSHHHH-HHHHHHHHHTCCEEEEECCTTSCCCHHHHHHHHHHCTTCC
T ss_pred EEEEecChHHHHHHHHHHhcCCCC--eEEEEe-CCCccH-HHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhcCCCeE
Confidence 366776666666666665543333 344443 333322 233344556888776642 223333332 33
Q ss_pred EEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 525 RVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 525 kVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
.|++ ...=...|.+.. --.|+-+|++|++.+++
T Consensus 134 ~v~~-~~~~nptG~~~~---l~~i~~l~~~~~~~li~ 166 (366)
T 1m32_A 134 HIAM-VHSETTTGMLNP---IDEVGALAHRYGKTYIV 166 (366)
T ss_dssp EEEE-ESEETTTTEECC---HHHHHHHHHHHTCEEEE
T ss_pred EEEE-ecccCCcceecC---HHHHHHHHHHcCCEEEE
Confidence 3332 222122376665 34677789999998776
No 163
>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*
Probab=41.95 E-value=1.2e+02 Score=29.77 Aligned_cols=108 Identities=17% Similarity=0.143 Sum_probs=56.1
Q ss_pred CEEEeecCcHHHHH-HHHHHHHcCCeeEEEEcCCCCCc-----hHHHHHHHHHh-CCCceEEE-ec----hHHHHHhh--
Q 006577 456 DVLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKH-----EGKLLLRRLVR-KGLSCTYT-HI----NAISYIIH-- 521 (640)
Q Consensus 456 dvILT~g~SstV~~-vL~~A~e~Gk~f~ViV~ESRP~~-----eG~~La~eL~~-~GI~vTlI-~D----sAv~~iM~-- 521 (640)
.+||..|-++.+-. +.+.+.++| .+|++++-.+.. +....+.+|.+ .+-.+.++ .| .++..++.
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 80 (348)
T 1ek6_A 3 EKVLVTGGAGYIGSHTVLELLEAG--YLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKY 80 (348)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTT--CCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC--CEEEEEecCCcccccccccHHHHHHHHhccCCceEEEECCCCCHHHHHHHHHhc
Confidence 47888888776644 445555666 456666422211 01122233332 12233322 23 34555666
Q ss_pred hccEEEEcceeEecC--------CCeecccchHHHHHHHhhCCCcEEEeccc
Q 006577 522 EVTRVFLGASSVLSN--------GTVCSRVGTACVAMVAYGFHIPVLVCCEA 565 (640)
Q Consensus 522 ~VdkVlvGADaIlaN--------G~VvNKiGT~~lAlaAk~~~VPVyV~aet 565 (640)
++|.||--|-..... ---+|-.||..+.-+|+..++.-+|.+.+
T Consensus 81 ~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS 132 (348)
T 1ek6_A 81 SFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFSSS 132 (348)
T ss_dssp CEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCCEEEECCCCcCccchhhchHHHHHHHHHHHHHHHHHHHHhCCCEEEEECc
Confidence 566666554321100 00135688999998999889876665444
No 164
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=41.86 E-value=59 Score=32.45 Aligned_cols=21 Identities=10% Similarity=0.191 Sum_probs=15.9
Q ss_pred HHHHHHhhCCCcEEEeccccc
Q 006577 547 CVAMVAYGFHIPVLVCCEAYK 567 (640)
Q Consensus 547 ~lAlaAk~~~VPVyV~aetyK 567 (640)
...++|+..+||++.++..+-
T Consensus 115 ~~~~aA~~~giP~v~~~~~~~ 135 (402)
T 3ia7_A 115 AGRLLAARWDRPAVRLTGGFA 135 (402)
T ss_dssp HHHHHHHHHTCCEEEEESSCC
T ss_pred HHHHHHHhhCCCEEEEecccc
Confidence 346778999999998875543
No 165
>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*
Probab=41.84 E-value=33 Score=35.16 Aligned_cols=105 Identities=15% Similarity=0.154 Sum_probs=71.3
Q ss_pred CCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhC-CCceEEEechHHHHHhhhccEEEEcceeE
Q 006577 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRK-GLSCTYTHINAISYIIHEVTRVFLGASSV 533 (640)
Q Consensus 455 gdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~-GI~vTlI~DsAv~~iM~~VdkVlvGADaI 533 (640)
-|.++.+-....+..++.++.+.|.+.-|++.+.-+..+-.++...+.+. |+. +|-.|..+.+.+...+...-...+
T Consensus 72 vD~avI~vP~~~~~~~~~e~i~~Gi~~iv~~t~G~~~~~~~~l~~~a~~~~gi~--liGPnc~Gii~p~~~~~~~~~~~~ 149 (305)
T 2fp4_A 72 ATASVIYVPPPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLRQGKTR--LIGPNCPGVINPGECKIGIMPGHI 149 (305)
T ss_dssp CCEEEECCCHHHHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHTTCSSCE--EECSSSCEEEETTTEEEESSCGGG
T ss_pred CCEEEEecCHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHhcCCcE--EEeCCCCeEecccccceeeccccC
Confidence 46777777788899999999998887667777776655555666777777 764 676777776665433322112222
Q ss_pred ecCC--CeecccchHHHHHH--HhhCCCcEEE
Q 006577 534 LSNG--TVCSRVGTACVAMV--AYGFHIPVLV 561 (640)
Q Consensus 534 laNG--~VvNKiGT~~lAla--Ak~~~VPVyV 561 (640)
..-| +++++.||+..+++ +...++.|--
T Consensus 150 ~~~G~va~vSqSG~l~~~~~~~~~~~g~G~S~ 181 (305)
T 2fp4_A 150 HKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSL 181 (305)
T ss_dssp CCEEEEEEEESCSHHHHHHHHHHHHTTCCEEE
T ss_pred CCCCCEEEEecchHHHHHHHHHHHhcCCCeeE
Confidence 3334 57899999988875 5667777753
No 166
>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A {Francisella tularensis subsp}
Probab=41.46 E-value=2.3e+02 Score=26.63 Aligned_cols=36 Identities=0% Similarity=-0.266 Sum_probs=28.6
Q ss_pred hHHHHHHHHHhCCCceEEEechHHHHHhhhc---cEEEE
Q 006577 493 EGKLLLRRLVRKGLSCTYTHINAISYIIHEV---TRVFL 528 (640)
Q Consensus 493 eG~~La~eL~~~GI~vTlI~DsAv~~iM~~V---dkVlv 528 (640)
+=.++++.+.+.|+++..|+++.-+.+-+.+ |.+|.
T Consensus 129 ~~~~~~~~ak~~g~~vi~iT~~~~s~la~~a~~~d~~l~ 167 (201)
T 3trj_A 129 NILSAVEEAHDLEMKVIALTGGSGGALQNMYNTDDIELR 167 (201)
T ss_dssp HHHHHHHHHHHTTCEEEEEEETTCCGGGGTCCTTCEEEE
T ss_pred HHHHHHHHHHHCCCcEEEEECCCCCHHHHhhccCCEEEE
Confidence 4455668888899999999988877777778 88875
No 167
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=41.42 E-value=1.6e+02 Score=24.82 Aligned_cols=36 Identities=19% Similarity=0.261 Sum_probs=24.5
Q ss_pred hccEEEEcceeEecCCCeec-ccchHHHHHHHhhCCCcEEEe
Q 006577 522 EVTRVFLGASSVLSNGTVCS-RVGTACVAMVAYGFHIPVLVC 562 (640)
Q Consensus 522 ~VdkVlvGADaIlaNG~VvN-KiGT~~lAlaAk~~~VPVyV~ 562 (640)
++|++++|+.. +| +-. -.|+..-. +.++-++||+|+
T Consensus 106 ~~dliV~G~~~---~~-~~~~~~Gs~~~~-v~~~~~~pVlvv 142 (143)
T 3fdx_A 106 PADLVIIASHR---PD-ITTYLLGSNAAA-VVRHAECSVLVV 142 (143)
T ss_dssp TCSEEEEESSC---TT-CCSCSSCHHHHH-HHHHCSSEEEEE
T ss_pred CCCEEEEeCCC---CC-CeeeeeccHHHH-HHHhCCCCEEEe
Confidence 69999999973 33 322 25665444 456778999986
No 168
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=41.28 E-value=2.3e+02 Score=27.67 Aligned_cols=59 Identities=10% Similarity=0.162 Sum_probs=36.1
Q ss_pred CCceEEEec--h---HHHHHhhhccEEEEcceeEecCCCeec-ccchHHHHHHHhhCCCcEEEeccccc
Q 006577 505 GLSCTYTHI--N---AISYIIHEVTRVFLGASSVLSNGTVCS-RVGTACVAMVAYGFHIPVLVCCEAYK 567 (640)
Q Consensus 505 GI~vTlI~D--s---Av~~iM~~VdkVlvGADaIlaNG~VvN-KiGT~~lAlaAk~~~VPVyV~aetyK 567 (640)
|++++.... . .+..+..++|+||+|...- |.+-. -.|+..-.+ .++.++||+|+-+.++
T Consensus 100 ~~~~~~~~~~g~~~~~I~~~a~~~DliV~G~~g~---~~~~~~~~Gs~~~~v-l~~~~~PVlvv~~~~~ 164 (309)
T 3cis_A 100 PPTVHSEIVPAAAVPTLVDMSKDAVLMVVGCLGS---GRWPGRLLGSVSSGL-LRHAHCPVVIIHDEDS 164 (309)
T ss_dssp CSCEEEEEESSCHHHHHHHHGGGEEEEEEESSCT---TCCTTCCSCHHHHHH-HHHCSSCEEEECTTCC
T ss_pred CceEEEEEecCCHHHHHHHHhcCCCEEEECCCCC---ccccccccCcHHHHH-HHhCCCCEEEEcCCcc
Confidence 888876432 1 2333334899999998752 22222 256655444 4556999999866543
No 169
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Probab=41.00 E-value=2.3e+02 Score=29.97 Aligned_cols=103 Identities=15% Similarity=0.107 Sum_probs=53.8
Q ss_pred CCCEEEeecCcHHHHHHHHHHHH--------cC----CeeEEEEcCCCCCchHHHHHHHHHhCCC-ceEEEech------
Q 006577 454 DGDVLLTYGSSSAVEMILQHAHE--------LG----KQFRVVIVDSRPKHEGKLLLRRLVRKGL-SCTYTHIN------ 514 (640)
Q Consensus 454 dgdvILT~g~SstV~~vL~~A~e--------~G----k~f~ViV~ESRP~~eG~~La~eL~~~GI-~vTlI~Ds------ 514 (640)
.+..++|-|-|..+...|..+.+ .| .+..|++.+ +.+-...-+..+...|. .+..|.-.
T Consensus 151 ~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~--~~h~s~~~~~~~~g~g~~~v~~v~~~~~~~~d 228 (504)
T 2okj_A 151 DGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSE--QSHYSIKKAGAALGFGTDNVILIKCNERGKII 228 (504)
T ss_dssp SCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEET--TSCTHHHHHHHHTTSCGGGEEEECBCTTSCBC
T ss_pred CCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECC--cchHHHHHHHHHcCCCcccEEEEecCCCCCCC
Confidence 45678887777777666666643 45 245677754 33322222333333344 77776532
Q ss_pred --HHHHHhhh------ccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 515 --AISYIIHE------VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 515 --Av~~iM~~------VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
++-..+.+ ..++|+....-...|.+. . --.|+-+|+.|++.|+|
T Consensus 229 ~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~-~--l~~I~~la~~~g~~lhv 280 (504)
T 2okj_A 229 PADFEAKILEAKQKGYVPFYVNATAGTTVYGAFD-P--IQEIADICEKYNLWLHV 280 (504)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBC-C--HHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcC-C--HHHHHHHHHHcCCEEEE
Confidence 23333333 234443322212224332 2 24677889999999876
No 170
>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*
Probab=40.80 E-value=92 Score=31.79 Aligned_cols=98 Identities=13% Similarity=0.071 Sum_probs=51.5
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHH-HHH-HHhCCCceEEEechHH---HHHhh-hccEEEEc
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLL-LRR-LVRKGLSCTYTHINAI---SYIIH-EVTRVFLG 529 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~L-a~e-L~~~GI~vTlI~DsAv---~~iM~-~VdkVlvG 529 (640)
+.|++-+-+..+..++..+.+.| -+|++.+ |.+.|... ... +...|+.+.++...-. -..+. +...|++
T Consensus 76 ~~i~~~sG~~ai~~~~~~~~~~g--d~vl~~~--~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~~~v~~- 150 (389)
T 3acz_A 76 GSAAFGSGMGAISSSTLAFLQKG--DHLIAGD--TLYGCTVSLFTHWLPRFGIEVDLIDTSDVEKVKAAWKPNTKMVYL- 150 (389)
T ss_dssp EEEEESSHHHHHHHHHTTTCCTT--CEEEEES--SCCHHHHHHHHHHHHHTTCEEEEECTTCHHHHHHTCCTTEEEEEE-
T ss_pred eEEEeCCHHHHHHHHHHHHhCCC--CEEEEeC--CCchHHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCCCCeEEEE-
Confidence 45555443333333443333333 3566654 56666332 333 5678999998864322 23333 3334444
Q ss_pred ceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 530 ADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
...--..|.+.. --.++-+|+.|++.++|
T Consensus 151 ~~~~nptG~~~~---l~~i~~~~~~~~~~liv 179 (389)
T 3acz_A 151 ESPANPTCKVSD---IKGIAVVCHERGARLVV 179 (389)
T ss_dssp ESSCTTTCCCCC---HHHHHHHHHHHTCEEEE
T ss_pred ECCCCCCCeecC---HHHHHHHHHHcCCEEEE
Confidence 222223455543 35677789999998876
No 171
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=40.64 E-value=44 Score=32.80 Aligned_cols=72 Identities=19% Similarity=0.221 Sum_probs=43.5
Q ss_pred EEEeecCcHHHHHHHHHHHHcCCeeEEEEcC-CCCCchHHHHHHHHHhCCCceEEEe-----chHHHHHhh--hccEEEE
Q 006577 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVD-SRPKHEGKLLLRRLVRKGLSCTYTH-----INAISYIIH--EVTRVFL 528 (640)
Q Consensus 457 vILT~g~SstV~~vL~~A~e~Gk~f~ViV~E-SRP~~eG~~La~eL~~~GI~vTlI~-----DsAv~~iM~--~VdkVlv 528 (640)
.||.-|..+....+|....+.+...+|.++= .+|...|.+.| .+.|||+.++. |..+...++ ++|.+++
T Consensus 12 ~vl~SG~gsnl~all~~~~~~~~~~~I~~Vis~~~~a~~l~~A---~~~gIp~~~~~~~~~~~~~~~~~L~~~~~Dlivl 88 (215)
T 3kcq_A 12 GVLISGRGSNLEALAKAFSTEESSVVISCVISNNAEARGLLIA---QSYGIPTFVVKRKPLDIEHISTVLREHDVDLVCL 88 (215)
T ss_dssp EEEESSCCHHHHHHHHHTCCC-CSEEEEEEEESCTTCTHHHHH---HHTTCCEEECCBTTBCHHHHHHHHHHTTCSEEEE
T ss_pred EEEEECCcHHHHHHHHHHHcCCCCcEEEEEEeCCcchHHHHHH---HHcCCCEEEeCcccCChHHHHHHHHHhCCCEEEE
Confidence 4677777777666666543322345554443 37777775443 45799999864 345555555 5888876
Q ss_pred cce
Q 006577 529 GAS 531 (640)
Q Consensus 529 GAD 531 (640)
.+-
T Consensus 89 agy 91 (215)
T 3kcq_A 89 AGF 91 (215)
T ss_dssp SSC
T ss_pred eCC
Confidence 653
No 172
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}
Probab=40.62 E-value=1.4e+02 Score=29.62 Aligned_cols=99 Identities=12% Similarity=0.012 Sum_probs=53.9
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEec-h-------HHHHHh-hhccEE
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI-N-------AISYII-HEVTRV 526 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D-s-------Av~~iM-~~VdkV 526 (640)
.+++|-|.+..+..+++.+.+.| -+|++. .|.+.|.... +...|+.+..+.. . .+-..+ .++..|
T Consensus 89 ~v~~~~g~~~a~~~~~~~l~~~g--d~vl~~--~p~y~~~~~~--~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v 162 (376)
T 2dou_A 89 EALALIGSQEGLAHLLLALTEPE--DLLLLP--EVAYPSYFGA--ARVASLRTFLIPLREDGLADLKAVPEGVWREAKVL 162 (376)
T ss_dssp SEEEESSHHHHHHHHHHHHCCTT--CEEEEE--SSCCHHHHHH--HHHTTCEEEEECBCTTSSBCGGGSCHHHHHHEEEE
T ss_pred cEEEcCCcHHHHHHHHHHhcCCC--CEEEEC--CCCcHhHHHH--HHHcCCEEEEeeCCCCCCCCHHHHHHhhccCceEE
Confidence 67888777777766666554333 355554 4667665433 3456887777652 1 111112 245555
Q ss_pred EEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 527 FLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 527 lvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
++. .--...|.++..-=-..++-+|++|++.+++
T Consensus 163 ~l~-~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 196 (376)
T 2dou_A 163 LLN-YPNNPTGAVADWGYFEEALGLARKHGLWLIH 196 (376)
T ss_dssp EEC-SSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred EEC-CCCCCcCccCCHHHHHHHHHHHHHcCCEEEE
Confidence 553 2212234443322123466688999998776
No 173
>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*
Probab=40.30 E-value=33 Score=39.03 Aligned_cols=69 Identities=14% Similarity=0.262 Sum_probs=45.4
Q ss_pred CEEEeecCcH--HHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHh---CCCceEEEechHHHHHhh-hccEEE
Q 006577 456 DVLLTYGSSS--AVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVR---KGLSCTYTHINAISYIIH-EVTRVF 527 (640)
Q Consensus 456 dvILT~g~Ss--tV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~---~GI~vTlI~DsAv~~iM~-~VdkVl 527 (640)
.+||..|..+ .+...|+.+.+.++.++||.+|-.|. ...+.++.+ .+=.||+|.-.+=-.-++ +||.+|
T Consensus 359 ~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~---A~~a~~~v~~N~~~dkVtVI~gd~eev~LPEKVDIIV 433 (637)
T 4gqb_A 359 QVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPN---AVVTLENWQFEEWGSQVTVVSSDMREWVAPEKADIIV 433 (637)
T ss_dssp EEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHH---HHHHHHHHHHHTTGGGEEEEESCTTTCCCSSCEEEEE
T ss_pred cEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHH---HHHHHHHHHhccCCCeEEEEeCcceeccCCcccCEEE
Confidence 4788887754 46677888877889999999999874 334544433 234578877544333333 566665
No 174
>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=40.29 E-value=82 Score=32.39 Aligned_cols=97 Identities=18% Similarity=0.145 Sum_probs=53.0
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHH--HHHhCCCceEEEec--hHHHHHhh-hccEEEEcc
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLR--RLVRKGLSCTYTHI--NAISYIIH-EVTRVFLGA 530 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~--eL~~~GI~vTlI~D--sAv~~iM~-~VdkVlvGA 530 (640)
+.|++-+.+..+..+|. ..+.| -+|++.+ |.+.|..... .+...|+.++++.. ..+-..+. +...|++ .
T Consensus 72 ~~i~~~sGt~a~~~al~-~~~~g--d~Vi~~~--~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~l~~~i~~~t~lv~~-~ 145 (393)
T 1n8p_A 72 YGLAFSSGSATTATILQ-SLPQG--SHAVSIG--DVYGGTHRYFTKVANAHGVETSFTNDLLNDLPQLIKENTKLVWI-E 145 (393)
T ss_dssp EEEEESCHHHHHHHHHH-TSCSS--CEEEEES--SCCHHHHHHHHHTSTTTCSCCEEESSHHHHHHHHSCSSEEEEEE-C
T ss_pred cEEEECChHHHHHHHHH-HcCCC--CEEEEeC--CCchHHHHHHHHHHHHcCcEEEEeCCChHHHHHhcccCceEEEE-E
Confidence 45555443555555555 43333 3566654 6776643332 45667999999873 23333343 3334443 2
Q ss_pred eeEecCCCeecccchHHHHHHHhhC----CCcEEE
Q 006577 531 SSVLSNGTVCSRVGTACVAMVAYGF----HIPVLV 561 (640)
Q Consensus 531 DaIlaNG~VvNKiGT~~lAlaAk~~----~VPVyV 561 (640)
..--..|.+.. --.|+-+|++| +++|+|
T Consensus 146 ~~~nptG~~~~---l~~i~~la~~~~~~~~~~liv 177 (393)
T 1n8p_A 146 TPTNPTLKVTD---IQKVADLIKKHAAGQDVILVV 177 (393)
T ss_dssp SSCTTTCCCCC---HHHHHHHHHHHTTTTTCEEEE
T ss_pred CCCCCcceecC---HHHHHHHHHHhCCCCCCEEEE
Confidence 22223454442 35577788998 988876
No 175
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=40.07 E-value=1.1e+02 Score=25.68 Aligned_cols=79 Identities=15% Similarity=0.099 Sum_probs=44.4
Q ss_pred eeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHH--Hhh-hccEEEEcceeEecCCCeecccchHHHHHHHh---
Q 006577 480 QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISY--IIH-EVTRVFLGASSVLSNGTVCSRVGTACVAMVAY--- 553 (640)
Q Consensus 480 ~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~--iM~-~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk--- 553 (640)
..+|+|+|..+.. ...+...|.+.|+.|....+..-+. +-. ..|.||+..+ +.+. -|.-.+..+-+
T Consensus 4 ~~~iLivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~--lp~~-----~g~~~~~~lr~~~~ 75 (136)
T 3t6k_A 4 PHTLLIVDDDDTV-AEMLELVLRGAGYEVRRAASGEEALQQIYKNLPDALICDVL--LPGI-----DGYTLCKRVRQHPL 75 (136)
T ss_dssp CCEEEEECSCHHH-HHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESC--CSSS-----CHHHHHHHHHHSGG
T ss_pred CCEEEEEeCCHHH-HHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEEeCC--CCCC-----CHHHHHHHHHcCCC
Confidence 3577777776653 2234466777788776555443222 211 5788887543 3332 24444444433
Q ss_pred hCCCcEEEecccc
Q 006577 554 GFHIPVLVCCEAY 566 (640)
Q Consensus 554 ~~~VPVyV~aety 566 (640)
..++|+++++...
T Consensus 76 ~~~~pii~~t~~~ 88 (136)
T 3t6k_A 76 TKTLPILMLTAQG 88 (136)
T ss_dssp GTTCCEEEEECTT
T ss_pred cCCccEEEEecCC
Confidence 2479999987653
No 176
>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*
Probab=40.05 E-value=1.8e+02 Score=29.34 Aligned_cols=104 Identities=13% Similarity=0.039 Sum_probs=53.0
Q ss_pred CCCEEE--eecCcHHHHHHHH--HHHHcCC---eeEEEEcCCCCCchHHHHHHHHHhCCCc-eEEEec----------hH
Q 006577 454 DGDVLL--TYGSSSAVEMILQ--HAHELGK---QFRVVIVDSRPKHEGKLLLRRLVRKGLS-CTYTHI----------NA 515 (640)
Q Consensus 454 dgdvIL--T~g~SstV~~vL~--~A~e~Gk---~f~ViV~ESRP~~eG~~La~eL~~~GI~-vTlI~D----------sA 515 (640)
...+++ |.|-+..+..+++ .....|+ .-+|++. .|.+.|... .+...|+. +..+.. ..
T Consensus 97 ~~~v~~~~t~gg~~a~~~~~~~~~~~~~g~~~~~d~Vl~~--~p~y~~~~~--~~~~~g~~~~~~~~~~~~~~~~~d~~~ 172 (412)
T 1ajs_A 97 EKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVS--SPTWENHNG--VFTTAGFKDIRSYRYWDTEKRGLDLQG 172 (412)
T ss_dssp TTCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEE--ESCCTHHHH--HHHHTTCSCEEEEECEETTTTEECHHH
T ss_pred CCcEEEEECCCcHHHHHHHHHHHHHhCcCcCCCCCeEEEc--CCCcHHHHH--HHHHcCCceeEEEeeecCCCCccCHHH
Confidence 456777 7777777666643 2233341 0245555 366666433 34446777 665542 12
Q ss_pred HHHHhhh---ccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 516 ISYIIHE---VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 516 v~~iM~~---VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
+-..+.+ -+++++=+..-...|.++..-=--.|+-+|+.|++.+++
T Consensus 173 l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 221 (412)
T 1ajs_A 173 FLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFF 221 (412)
T ss_dssp HHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 3333332 123433333333344443332223567788899998776
No 177
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=40.03 E-value=1.1e+02 Score=25.68 Aligned_cols=78 Identities=21% Similarity=0.209 Sum_probs=44.8
Q ss_pred eeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHH--HHHhh-hccEEEEcceeEecCCCeecccchHHHHHHHhhCC
Q 006577 480 QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAI--SYIIH-EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFH 556 (640)
Q Consensus 480 ~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv--~~iM~-~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~ 556 (640)
..+|+++|..+.. ...+...|...|+.|....+..- .++-. ..|.||+..+ +.+. -|.-.+..+-+...
T Consensus 4 ~~~Ilivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvllD~~--l~~~-----~g~~l~~~l~~~~~ 75 (136)
T 2qzj_A 4 QTKILIIDGDKDN-CQKLKGFLEEKGISIDLAYNCEEAIGKIFSNKYDLIFLEII--LSDG-----DGWTLCKKIRNVTT 75 (136)
T ss_dssp CCEEEEECSCHHH-HHHHHHHHHTTTCEEEEESSHHHHHHHHHHCCCSEEEEESE--ETTE-----EHHHHHHHHHTTCC
T ss_pred CCeEEEEcCCHHH-HHHHHHHHHHCCCEEEEECCHHHHHHHHHhcCCCEEEEeCC--CCCC-----CHHHHHHHHccCCC
Confidence 4577888777643 23345667777887765554322 22222 5788888543 3321 24334444444458
Q ss_pred CcEEEeccc
Q 006577 557 IPVLVCCEA 565 (640)
Q Consensus 557 VPVyV~aet 565 (640)
+|+++++..
T Consensus 76 ~~ii~ls~~ 84 (136)
T 2qzj_A 76 CPIVYMTYI 84 (136)
T ss_dssp CCEEEEESC
T ss_pred CCEEEEEcC
Confidence 999988654
No 178
>4ggj_A Mitochondrial cardiolipin hydrolase; piRNA pathway, protein-RNA interactions, piRNA RNAI, HKD MOT zinc finger, nuclease, nucleic acid binding; 1.75A {Mus musculus} PDB: 4ggk_A
Probab=40.02 E-value=43 Score=31.75 Aligned_cols=56 Identities=18% Similarity=0.164 Sum_probs=37.9
Q ss_pred EEEeecCc-HHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEec
Q 006577 457 VLLTYGSS-SAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI 513 (640)
Q Consensus 457 vILT~g~S-stV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D 513 (640)
.|.+|..+ ..+...|..|+++|.+++|++....-...+ .....|.+.||+|.+...
T Consensus 63 ~i~~y~~~~~~i~~aL~~aa~rGV~Vrii~D~~~~~~~~-~~~~~l~~~gi~v~~~~~ 119 (196)
T 4ggj_A 63 ELCLFAFSSPQLGRAVQLLHQRGVRVRVITDCDYMALNG-SQIGLLRKAGIQVRHDQD 119 (196)
T ss_dssp EEEESCBCCHHHHHHHHHHHHTTCEEEEEESSCCC---C-CHHHHHHHTTCEEEECCS
T ss_pred EEEEEEeCCHHHHHHHHHHHHcCCcEEEEEecccccccH-HHHHHHHhcCCCcccccc
Confidence 35666654 457778888999999999998654333222 234678999999876543
No 179
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=40.00 E-value=29 Score=36.73 Aligned_cols=77 Identities=21% Similarity=0.261 Sum_probs=52.6
Q ss_pred hccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEcc
Q 006577 451 KIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA 530 (640)
Q Consensus 451 ~I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGA 530 (640)
.|..|.+||..|....-..+++.|++.| ++|++++..|...+..++ +.-+...|....++..+..++|.|+.+-
T Consensus 31 ~~~~~~~IlIlG~G~lg~~~~~aa~~lG--~~v~v~d~~~~~p~~~~a----d~~~~~~~~d~~~l~~~a~~~D~V~~~~ 104 (419)
T 4e4t_A 31 PILPGAWLGMVGGGQLGRMFCFAAQSMG--YRVAVLDPDPASPAGAVA----DRHLRAAYDDEAALAELAGLCEAVSTEF 104 (419)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCTTCHHHHHS----SEEECCCTTCHHHHHHHHHHCSEEEECC
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEECCCCcCchhhhC----CEEEECCcCCHHHHHHHHhcCCEEEEcc
Confidence 5778999999999988888888888766 568888877776655443 2211111112234555567899999886
Q ss_pred eeE
Q 006577 531 SSV 533 (640)
Q Consensus 531 DaI 533 (640)
+.+
T Consensus 105 e~~ 107 (419)
T 4e4t_A 105 ENV 107 (419)
T ss_dssp TTC
T ss_pred CcC
Confidence 655
No 180
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=39.98 E-value=53 Score=30.19 Aligned_cols=99 Identities=11% Similarity=-0.002 Sum_probs=59.4
Q ss_pred EEEeecCcHHHHH-HHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEE--echHHHHHhhhccEEEEcceeE
Q 006577 457 VLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT--HINAISYIIHEVTRVFLGASSV 533 (640)
Q Consensus 457 vILT~g~SstV~~-vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI--~DsAv~~iM~~VdkVlvGADaI 533 (640)
+||..|-++.+=. +++.+.++| .+|+++.-++. . ...|...++.+... .|... ..+..+|.||--|-..
T Consensus 2 kilVtGatG~iG~~l~~~L~~~g--~~V~~~~R~~~----~-~~~~~~~~~~~~~~D~~d~~~-~~~~~~d~vi~~ag~~ 73 (224)
T 3h2s_A 2 KIAVLGATGRAGSAIVAEARRRG--HEVLAVVRDPQ----K-AADRLGATVATLVKEPLVLTE-ADLDSVDAVVDALSVP 73 (224)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCHH----H-HHHHTCTTSEEEECCGGGCCH-HHHTTCSEEEECCCCC
T ss_pred EEEEEcCCCHHHHHHHHHHHHCC--CEEEEEEeccc----c-cccccCCCceEEecccccccH-hhcccCCEEEECCccC
Confidence 5788888776644 445556666 56666643321 1 23444456544332 23333 6677888887766332
Q ss_pred -ecCCCeecccchHHHHHHHhhCCCcEEEec
Q 006577 534 -LSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (640)
Q Consensus 534 -laNG~VvNKiGT~~lAlaAk~~~VPVyV~a 563 (640)
...-.-.|-.||..+.-+|+..+..|++++
T Consensus 74 ~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~S 104 (224)
T 3h2s_A 74 WGSGRGYLHLDFATHLVSLLRNSDTLAVFIL 104 (224)
T ss_dssp TTSSCTHHHHHHHHHHHHTCTTCCCEEEEEC
T ss_pred CCcchhhHHHHHHHHHHHHHHHcCCcEEEEe
Confidence 112234588899999989999996676664
No 181
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=39.94 E-value=29 Score=30.55 Aligned_cols=55 Identities=9% Similarity=-0.068 Sum_probs=35.7
Q ss_pred HHHhCCCceEEE--echHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEec
Q 006577 500 RLVRKGLSCTYT--HINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (640)
Q Consensus 500 eL~~~GI~vTlI--~DsAv~~iM~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~a 563 (640)
...+.|+++... ..+.+...+.+.|.||+|-..-+.-. .+--.|..++|||.|+-
T Consensus 29 ~a~~~gi~v~i~a~~~~~~~~~~~~~DvvLLgPQV~y~~~---------~ik~~~~~~~ipV~vI~ 85 (108)
T 3nbm_A 29 GANLTEVRVIANSGAYGAHYDIMGVYDLIILAPQVRSYYR---------EMKVDAERLGIQIVATR 85 (108)
T ss_dssp HHHHHTCSEEEEEEETTSCTTTGGGCSEEEECGGGGGGHH---------HHHHHHTTTTCEEEECC
T ss_pred HHHHCCCceEEEEcchHHHHhhccCCCEEEEChHHHHHHH---------HHHHHhhhcCCcEEEeC
Confidence 334457777773 34445556678999999976544221 23445677899999963
No 182
>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1
Probab=39.90 E-value=24 Score=34.49 Aligned_cols=86 Identities=14% Similarity=0.073 Sum_probs=49.4
Q ss_pred CeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechH---HHHHhhhccEEEEcceeEecCCCe-eccc-chHHHHHHHh
Q 006577 479 KQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA---ISYIIHEVTRVFLGASSVLSNGTV-CSRV-GTACVAMVAY 553 (640)
Q Consensus 479 k~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsA---v~~iM~~VdkVlvGADaIlaNG~V-vNKi-GT~~lAlaAk 553 (640)
...+|.|++-.|...-..+.+.|...|+++.++.-.. +...+.++|.+|+.=--....+.. .... +...+.--|.
T Consensus 11 ~~~~~~~i~~~~~~~~~~i~~~l~~~G~~v~v~~~~~~~~~~~~l~~~Dglil~GG~~~~~~~~~~~~l~~~~~~i~~~~ 90 (239)
T 1o1y_A 11 HHVRVLAIRHVEIEDLGMMEDIFREKNWSFDYLDTPKGEKLERPLEEYSLVVLLGGYMGAYEEEKYPFLKYEFQLIEEIL 90 (239)
T ss_dssp CCCEEEEECSSTTSSCTHHHHHHHHTTCEEEEECGGGTCCCSSCGGGCSEEEECCCSCCTTCTTTCTHHHHHHHHHHHHH
T ss_pred ceeEEEEEECCCCCCchHHHHHHHhCCCcEEEeCCcCccccccchhcCCEEEECCCCccccCCccChhHHHHHHHHHHHH
Confidence 4578888888887665567788999999998665332 122345788776643111111110 1111 1222222334
Q ss_pred hCCCcEEEecc
Q 006577 554 GFHIPVLVCCE 564 (640)
Q Consensus 554 ~~~VPVyV~ae 564 (640)
..++|++-+|=
T Consensus 91 ~~~~PiLGIC~ 101 (239)
T 1o1y_A 91 KKEIPFLGICL 101 (239)
T ss_dssp HHTCCEEEETH
T ss_pred HCCCCEEEEch
Confidence 56899997664
No 183
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=39.80 E-value=2.1e+02 Score=28.16 Aligned_cols=99 Identities=17% Similarity=0.330 Sum_probs=54.4
Q ss_pred CCEEEeecCcHHHHHHHHHH-HHcCCeeEEEEcCCCCCchHHHHH-HHH-HhCCCceEEEech-------HHHHH---hh
Q 006577 455 GDVLLTYGSSSAVEMILQHA-HELGKQFRVVIVDSRPKHEGKLLL-RRL-VRKGLSCTYTHIN-------AISYI---IH 521 (640)
Q Consensus 455 gdvILT~g~SstV~~vL~~A-~e~Gk~f~ViV~ESRP~~eG~~La-~eL-~~~GI~vTlI~Ds-------Av~~i---M~ 521 (640)
..+++|.|-+..+..+++.+ .+.| -+|++. .|.+.+.... ..+ ...|+.+..+... -+..+ +.
T Consensus 77 ~~v~~~~g~t~a~~~~~~~~~~~~g--d~vl~~--~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~ 152 (390)
T 1elu_A 77 NTITITDNVTTGCDIVLWGLDWHQG--DEILLT--DCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLG 152 (390)
T ss_dssp GGEEEESSHHHHHHHHHHHSCCCTT--CEEEEE--TTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCC
T ss_pred HHEEEeCChHHHHHHHHhCCCCCCC--CEEEEe--cCcccHHHHHHHHHHHHhCcEEEEEcCCCCCCccchHHHHHHhcC
Confidence 35777777666666666655 3333 355554 5666665543 233 3458888777632 12222 22
Q ss_pred -hccEEEEcceeEecCCCeecccchHHHHHHHh----hCCCcEEE
Q 006577 522 -EVTRVFLGASSVLSNGTVCSRVGTACVAMVAY----GFHIPVLV 561 (640)
Q Consensus 522 -~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk----~~~VPVyV 561 (640)
++..|++ ...-...|.++. --.|+-+|+ .|++.+++
T Consensus 153 ~~~~~v~~-~~~~nptG~~~~---~~~i~~l~~~~~~~~~~~li~ 193 (390)
T 1elu_A 153 PKTRLVIL-SHLLWNTGQVLP---LAEIMAVCRRHQGNYPVRVLV 193 (390)
T ss_dssp TTEEEEEE-ESBCTTTCCBCC---HHHHHHHHHHCCSSSCCEEEE
T ss_pred CCceEEEE-eccccCCceecC---HHHHHHHHhhhhhhcCcEEEE
Confidence 3333433 222233465555 346667788 89987776
No 184
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}
Probab=39.68 E-value=40 Score=32.52 Aligned_cols=101 Identities=10% Similarity=-0.000 Sum_probs=58.3
Q ss_pred EEEeecCcHHHHH-HHHHHHHc-CCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEe--c-hHHHHHhhhccEEEEcce
Q 006577 457 VLLTYGSSSAVEM-ILQHAHEL-GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH--I-NAISYIIHEVTRVFLGAS 531 (640)
Q Consensus 457 vILT~g~SstV~~-vL~~A~e~-Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~--D-sAv~~iM~~VdkVlvGAD 531 (640)
+||..|-++.+-. +++.+.+. | .+|+++.-+|.. +..|...|+.+...- | ..+..+++.+|.||.-|-
T Consensus 2 ~ilVtGatG~iG~~l~~~L~~~~g--~~V~~~~R~~~~-----~~~~~~~~v~~~~~D~~d~~~l~~~~~~~d~vi~~a~ 74 (289)
T 3e48_A 2 NIMLTGATGHLGTHITNQAIANHI--DHFHIGVRNVEK-----VPDDWRGKVSVRQLDYFNQESMVEAFKGMDTVVFIPS 74 (289)
T ss_dssp CEEEETTTSHHHHHHHHHHHHTTC--TTEEEEESSGGG-----SCGGGBTTBEEEECCTTCHHHHHHHTTTCSEEEECCC
T ss_pred EEEEEcCCchHHHHHHHHHhhCCC--CcEEEEECCHHH-----HHHhhhCCCEEEEcCCCCHHHHHHHHhCCCEEEEeCC
Confidence 4778888776644 34444443 4 445555333321 122344555443321 2 456667778888877653
Q ss_pred eEecCCCeecccchHHHHHHHhhCCCcEEEecccc
Q 006577 532 SVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAY 566 (640)
Q Consensus 532 aIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~aety 566 (640)
.. +....|-.|+..+.-+|+..++.-+|...++
T Consensus 75 ~~--~~~~~~~~~~~~l~~aa~~~gv~~iv~~Ss~ 107 (289)
T 3e48_A 75 II--HPSFKRIPEVENLVYAAKQSGVAHIIFIGYY 107 (289)
T ss_dssp CC--CSHHHHHHHHHHHHHHHHHTTCCEEEEEEES
T ss_pred CC--ccchhhHHHHHHHHHHHHHcCCCEEEEEccc
Confidence 22 1122356788888889999999877766664
No 185
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0
Probab=39.64 E-value=84 Score=30.86 Aligned_cols=97 Identities=18% Similarity=0.251 Sum_probs=50.9
Q ss_pred CCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEec--------hHHHHHhhhccE
Q 006577 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--------NAISYIIHEVTR 525 (640)
Q Consensus 454 dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D--------sAv~~iM~~Vdk 525 (640)
...+++|-|.+..+..++..+ -+|++. .|.+.+.. ..+...|+.+..+.. ..+-..+.+...
T Consensus 78 ~~~i~~~~g~t~al~~~~~~~------d~vi~~--~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 147 (361)
T 3ftb_A 78 DIGIVLGNGASEIIELSISLF------EKILII--VPSYAEYE--INAKKHGVSVVFSYLDENMCIDYEDIISKIDDVDS 147 (361)
T ss_dssp SCEEEEESSHHHHHHHHHTTC------SEEEEE--ESCCTHHH--HHHHHTTCEEEEEECCTTSCCCHHHHHHHTTTCSE
T ss_pred cceEEEcCCHHHHHHHHHHHc------CcEEEe--cCChHHHH--HHHHHcCCeEEEeecCcccCCCHHHHHHhccCCCE
Confidence 345666655555555555443 255554 35665543 334456888887762 234444445333
Q ss_pred EEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 526 VFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 526 VlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
|++ ..---..|.++..---..++-+|+.|++.+++
T Consensus 148 v~i-~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~ 182 (361)
T 3ftb_A 148 VII-GNPNNPNGGLINKEKFIHVLKLAEEKKKTIII 182 (361)
T ss_dssp EEE-ETTBTTTTBCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred EEE-eCCCCCCCCCCCHHHHHHHHHHhhhcCCEEEE
Confidence 322 11122234343333334566778899998887
No 186
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A
Probab=39.40 E-value=40 Score=32.05 Aligned_cols=91 Identities=11% Similarity=0.081 Sum_probs=53.8
Q ss_pred CCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechH----HHHH-hhhccEEEEc
Q 006577 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA----ISYI-IHEVTRVFLG 529 (640)
Q Consensus 455 gdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsA----v~~i-M~~VdkVlvG 529 (640)
...|+..|+...-..+.+.+.+. .+ |+++|..|.. +..+. .|+.+.+ -|.. +... +.++|.||+.
T Consensus 9 ~~~viI~G~G~~G~~la~~L~~~--g~-v~vid~~~~~-----~~~~~-~~~~~i~-gd~~~~~~l~~a~i~~ad~vi~~ 78 (234)
T 2aef_A 9 SRHVVICGWSESTLECLRELRGS--EV-FVLAEDENVR-----KKVLR-SGANFVH-GDPTRVSDLEKANVRGARAVIVD 78 (234)
T ss_dssp -CEEEEESCCHHHHHHHHHSTTS--EE-EEEESCGGGH-----HHHHH-TTCEEEE-SCTTCHHHHHHTTCTTCSEEEEC
T ss_pred CCEEEEECCChHHHHHHHHHHhC--Ce-EEEEECCHHH-----HHHHh-cCCeEEE-cCCCCHHHHHhcCcchhcEEEEc
Confidence 45788889877666666666544 45 8888876642 33444 6765543 2322 1122 5578888765
Q ss_pred ceeEecCCCeecccchHHHHHHHhhCCCc--EEEecc
Q 006577 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIP--VLVCCE 564 (640)
Q Consensus 530 ADaIlaNG~VvNKiGT~~lAlaAk~~~VP--VyV~ae 564 (640)
.+ +..-...+++.|+.++.. +++-+.
T Consensus 79 ~~---------~d~~n~~~~~~a~~~~~~~~iia~~~ 106 (234)
T 2aef_A 79 LE---------SDSETIHCILGIRKIDESVRIIAEAE 106 (234)
T ss_dssp CS---------CHHHHHHHHHHHHHHCSSSEEEEECS
T ss_pred CC---------CcHHHHHHHHHHHHHCCCCeEEEEEC
Confidence 42 223456678889988765 444443
No 187
>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*
Probab=39.36 E-value=73 Score=33.43 Aligned_cols=74 Identities=14% Similarity=0.124 Sum_probs=41.7
Q ss_pred eEEEEcCCCCCchHHHHH--HHHHhCCCceEEEech---HHHHHhh-hccEEEEcceeEe-cCCCeecccchHHHHHHHh
Q 006577 481 FRVVIVDSRPKHEGKLLL--RRLVRKGLSCTYTHIN---AISYIIH-EVTRVFLGASSVL-SNGTVCSRVGTACVAMVAY 553 (640)
Q Consensus 481 f~ViV~ESRP~~eG~~La--~eL~~~GI~vTlI~Ds---Av~~iM~-~VdkVlvGADaIl-aNG~VvNKiGT~~lAlaAk 553 (640)
-+|++.+ |.+.|..-. ..|...|+.++++... .+-..+. +..+|++ +.+. ..|.+.. --.|+-+|+
T Consensus 122 d~Vi~~~--~~y~~~~~~~~~~l~~~G~~v~~v~~~d~~~le~ai~~~tklV~~--e~~~NptG~v~d---l~~I~~la~ 194 (415)
T 2fq6_A 122 DHVLMTN--TAYEPSQDFCSKILSKLGVTTSWFDPLIGADIVKHLQPNTKIVFL--ESPGSITMEVHD---VPAIVAAVR 194 (415)
T ss_dssp CEEEEET--TSCHHHHHHHHHTGGGGTCEEEEECTTCGGGGGGGCCTTEEEEEE--ESSCTTTCCCCC---HHHHHHHHH
T ss_pred CEEEEeC--CCchHHHHHHHHHHHHcCcEEEEECCCCHHHHHHhhccCCcEEEE--ECCCCCCCEeec---HHHHHHHHH
Confidence 3666653 666665433 3356689999998632 2333333 2333333 2222 2344432 256778899
Q ss_pred h--CCCcEEE
Q 006577 554 G--FHIPVLV 561 (640)
Q Consensus 554 ~--~~VPVyV 561 (640)
+ ++++|+|
T Consensus 195 ~~~~g~~liv 204 (415)
T 2fq6_A 195 SVVPDAIIMI 204 (415)
T ss_dssp HHCTTCEEEE
T ss_pred hhcCCCEEEE
Confidence 9 9999887
No 188
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=39.36 E-value=1.2e+02 Score=30.19 Aligned_cols=101 Identities=15% Similarity=0.110 Sum_probs=53.3
Q ss_pred CCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEec-----------hHHHHHhh-
Q 006577 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI-----------NAISYIIH- 521 (640)
Q Consensus 454 dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D-----------sAv~~iM~- 521 (640)
...+++|.|.+..+..+++.+.+.| -+|++. .|.+.|...+ +...|..+..+.- ..+-..+.
T Consensus 87 ~~~v~~t~g~~~al~~~~~~l~~~g--d~vl~~--~p~y~~~~~~--~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~ 160 (390)
T 1d2f_A 87 SQTVVYGPSVIYMVSELIRQWSETG--EGVVIH--TPAYDAFYKA--IEGNQRTVMPVALEKQADGWFCDMGKLEAVLAK 160 (390)
T ss_dssp GGGEEEESCHHHHHHHHHHHSSCTT--CEEEEE--ESCCHHHHHH--HHHTTCEEEEEECEECSSSEECCHHHHHHHHTS
T ss_pred HHHEEEcCCHHHHHHHHHHHhcCCC--CEEEEc--CCCcHHHHHH--HHHCCCEEEEeecccCCCccccCHHHHHHHhcc
Confidence 3457777776666666666554333 355553 3666664433 3446776665531 12233333
Q ss_pred -hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 522 -EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 522 -~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
++..|++- .--...|.++..-=-..|+-+|+.|++.+++
T Consensus 161 ~~~~~v~l~-~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 200 (390)
T 1d2f_A 161 PECKIMLLC-SPQNPTGKVWTCDELEIMADLCERHGVRVIS 200 (390)
T ss_dssp TTEEEEEEE-SSCTTTCCCCCTTHHHHHHHHHHHTTCEEEE
T ss_pred CCCeEEEEe-CCCCCCCcCcCHHHHHHHHHHHHHcCCEEEE
Confidence 34455442 2222235444332223566688999998876
No 189
>3d3u_A 4-hydroxybutyrate COA-transferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.80A {Porphyromonas gingivalis}
Probab=39.32 E-value=28 Score=37.46 Aligned_cols=118 Identities=12% Similarity=0.051 Sum_probs=58.7
Q ss_pred HHHHH-HhccCCCEEEeecCcHHHHHHHHHHHHc--C-CeeEEEEcC--CCC---------------CchHHHHHHHHHh
Q 006577 445 VKHAV-TKIRDGDVLLTYGSSSAVEMILQHAHEL--G-KQFRVVIVD--SRP---------------KHEGKLLLRRLVR 503 (640)
Q Consensus 445 a~~a~-~~I~dgdvILT~g~SstV~~vL~~A~e~--G-k~f~ViV~E--SRP---------------~~eG~~La~eL~~ 503 (640)
++.|+ ++|++|++|...++++.-..++....++ + ++++|+..- ..+ ++-|.. .+++.+
T Consensus 14 a~eAv~~~IkdG~tV~~ggf~g~P~~Li~AL~~~~~~~~dLtli~~~~~~~~~~~~~~l~~~i~~~~~~~g~~-~r~~i~ 92 (439)
T 3d3u_A 14 ADEAVVDSLKPGTKVVFGHAAAAPVRFSQAMYRQREKLENITVFHMLYFGDAPHLAPEMRSHVHPTLNFLEGN-SRPASR 92 (439)
T ss_dssp HHHHHHHHCCTTCEEEECCBTTCCHHHHHHHHHTTTTCCSEEEECSCBSSCCTTSSGGGTTTEEEEC-------------
T ss_pred HHHHHHhhCCCcCEEEECcccChHHHHHHHHHHhhCCCCCEEEEEecCCCcchhccHHhCCcEEEEECCCChH-HHHHHH
Confidence 34466 7899999999988865444444444433 2 567777432 111 112222 233333
Q ss_pred CC-CceEEEechHH-HHHhh---hccEEEEcceeEecCCCeecccchH-HHHHHHhhCCCcEEEeccc
Q 006577 504 KG-LSCTYTHINAI-SYIIH---EVTRVFLGASSVLSNGTVCSRVGTA-CVAMVAYGFHIPVLVCCEA 565 (640)
Q Consensus 504 ~G-I~vTlI~DsAv-~~iM~---~VdkVlvGADaIlaNG~VvNKiGT~-~lAlaAk~~~VPVyV~aet 565 (640)
.| +..+-+..+.+ .|+.. .+|..|+.|...-.+|.+.- |+. ..+.++.....-|+|-++.
T Consensus 93 ~G~~~~~P~~ls~~~~~l~~~~l~~DVAlI~as~~D~~Gnls~--g~s~~~~~~~~~aA~~VIveVn~ 158 (439)
T 3d3u_A 93 DRRVDFIPCHFHEVPELFRQGFFPLDVAVVQVSTPNEEGYCSF--GVSCDYTKAAAECAPVVVAEVNK 158 (439)
T ss_dssp --------CCGGGHHHHHTTSSSCCSEEEEEEECCCTTSEEEC--TTBCBTHHHHHHHCSEEEEEEES
T ss_pred cCCCeEECCCcchHHHHHHcCCCCCCEEEEEEecCCCCceEEE--eccccchHHHHhhCCeEEEEECC
Confidence 34 33333333333 34443 58999999999999998855 432 2233333334445554443
No 190
>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}
Probab=39.29 E-value=54 Score=34.95 Aligned_cols=110 Identities=15% Similarity=0.053 Sum_probs=63.2
Q ss_pred cCCCEEEeecCcHHHHH-HHHHHHHcCC-eeEEEEcCCCCCchHHHHHHHH------------------HhCCCceEEEe
Q 006577 453 RDGDVLLTYGSSSAVEM-ILQHAHELGK-QFRVVIVDSRPKHEGKLLLRRL------------------VRKGLSCTYTH 512 (640)
Q Consensus 453 ~dgdvILT~g~SstV~~-vL~~A~e~Gk-~f~ViV~ESRP~~eG~~La~eL------------------~~~GI~vTlI~ 512 (640)
..+.+||..|-++.+-. +++.+.+.+. ..+|+++.-++..+ ....+| ...++.+...-
T Consensus 71 ~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~R~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~v~~D 148 (478)
T 4dqv_A 71 PELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDE--DARRRLEKTFDSGDPELLRHFKELAADRLEVVAGD 148 (478)
T ss_dssp SCCCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEECSSSHH--HHHHHHHGGGCSSCHHHHHHHHHHHTTTEEEEECC
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEECCCCcH--HHHHHHHHHHHhcchhhhhhhhhhccCceEEEEeE
Confidence 34678999998877644 4455555522 36788876554422 111111 11344333221
Q ss_pred c---------hHHHHHhhhccEEEEcceeEecCC----CeecccchHHHHHHHhhCCC-cEEEecc
Q 006577 513 I---------NAISYIIHEVTRVFLGASSVLSNG----TVCSRVGTACVAMVAYGFHI-PVLVCCE 564 (640)
Q Consensus 513 D---------sAv~~iM~~VdkVlvGADaIlaNG----~VvNKiGT~~lAlaAk~~~V-PVyV~ae 564 (640)
. ..+..++.++|.||--|-.+-.+. --+|-.||..++-+|+.+++ .|+.++.
T Consensus 149 l~~~~~gld~~~~~~~~~~~D~Vih~Aa~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~~V~iSS 214 (478)
T 4dqv_A 149 KSEPDLGLDQPMWRRLAETVDLIVDSAAMVNAFPYHELFGPNVAGTAELIRIALTTKLKPFTYVST 214 (478)
T ss_dssp TTSGGGGCCHHHHHHHHHHCCEEEECCSSCSBSSCCEEHHHHHHHHHHHHHHHTSSSCCCEEEEEE
T ss_pred CCCcccCCCHHHHHHHHcCCCEEEECccccCCcCHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEee
Confidence 1 246677788998887664322110 11477899999999999997 4444433
No 191
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=39.12 E-value=1.2e+02 Score=29.88 Aligned_cols=97 Identities=13% Similarity=0.082 Sum_probs=53.0
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEec--------hHHHHHhhh--ccE
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--------NAISYIIHE--VTR 525 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D--------sAv~~iM~~--Vdk 525 (640)
.+++|.|.+..+. +|..+.+.| -+|++.+ |.+-|..+...+...|+.+..+.. ..+-..+.+ +..
T Consensus 56 ~v~~~~g~t~al~-~~~~~~~~g--d~vi~~~--~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~ 130 (384)
T 3zrp_A 56 PLIIPGGGTSAME-SVTSLLKPN--DKILVVS--NGVFGDRWEQIFKRYPVNVKVLRPSPGDYVKPGEVEEEVRKSEYKL 130 (384)
T ss_dssp EEEEESCHHHHHH-HGGGGCCTT--CEEEEEC--SSHHHHHHHHHHTTSSCEEEEECCSTTCCCCHHHHHHHHHHSCEEE
T ss_pred EEEEcCCcHHHHH-HHHhhcCCC--CEEEEec--CCcchHHHHHHHHHcCCcEEEecCCCCCCCCHHHHHHHHHhCCCcE
Confidence 3666766666666 665554333 3566553 344444344444567888877752 223333333 333
Q ss_pred EEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 526 VFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 526 VlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
|++ ..-=...|.+.. --.|+-+|+.|++.+++
T Consensus 131 v~~-~~~~nptG~~~~---l~~i~~l~~~~~~~li~ 162 (384)
T 3zrp_A 131 VAL-THVETSTGVREP---VKDVINKIRKYVELIVV 162 (384)
T ss_dssp EEE-ESEETTTTEECC---HHHHHHHHGGGEEEEEE
T ss_pred EEE-eCCCCCCceECc---HHHHHHHHHhcCCEEEE
Confidence 333 333233454444 34577789999987776
No 192
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=38.98 E-value=3.9e+02 Score=28.53 Aligned_cols=94 Identities=15% Similarity=0.099 Sum_probs=56.6
Q ss_pred CCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCC-CceEEEec--hH-HHHHhh--hccEEE
Q 006577 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKG-LSCTYTHI--NA-ISYIIH--EVTRVF 527 (640)
Q Consensus 454 dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~G-I~vTlI~D--sA-v~~iM~--~VdkVl 527 (640)
.|..|+.++....+..+.+-+.+.|.....+++.+.....-.++.+.|.+.| ..+.++.+ .. +..+++ ++|.+|
T Consensus 311 ~gkrv~i~~~~~~~~~l~~~L~elG~~vv~v~~~~~~~~~~~~~~~ll~~~~~~~~~v~~~~d~~~l~~~i~~~~pDl~i 390 (458)
T 1mio_B 311 QGKKVALLGDPDEIIALSKFIIELGAIPKYVVTGTPGMKFQKEIDAMLAEAGIEGSKVKVEGDFFDVHQWIKNEGVDLLI 390 (458)
T ss_dssp TTCEEEEEECHHHHHHHHHHHHTTTCEEEEEEESSCCHHHHHHHHHHHHTTTCCSCEEEESCBHHHHHHHHHHSCCSEEE
T ss_pred CCCEEEEEcCchHHHHHHHHHHHCCCEEEEEEeCCCCHHHHHHHHHHHHhcCCCCCEEEECCCHHHHHHHHHhcCCCEEE
Confidence 5788999988877777666666778766555565543333334444555556 55444443 22 333444 577766
Q ss_pred EcceeEecCCCeecccchHHHHHHHhhCCCcEEEec
Q 006577 528 LGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (640)
Q Consensus 528 vGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~a 563 (640)
-|.. -.-+|+..++|++.+.
T Consensus 391 g~~~----------------~~~~a~k~gip~~~~~ 410 (458)
T 1mio_B 391 SNTY----------------GKFIAREENIPFVRFG 410 (458)
T ss_dssp ESGG----------------GHHHHHHHTCCEEECS
T ss_pred eCcc----------------hHHHHHHcCCCEEEee
Confidence 4421 1345778899999763
No 193
>1x87_A Urocanase protein; structural genomics, protein STR initiative, MCSG, PSI, midwest center for structural genomi; HET: MSE NAD; 2.40A {Geobacillus stearothermophilus} SCOP: e.51.1.1
Probab=38.93 E-value=1.1e+02 Score=34.09 Aligned_cols=115 Identities=24% Similarity=0.340 Sum_probs=82.1
Q ss_pred chHHHHHHHHHHHHHHHhcCCcccc-HHHHHHHHHHHHHhc--------------------CCCCCHHHHHHHHHHHHHH
Q 006577 373 LSRDLTAKISSYVSFLIDCRPLSVS-MGNAIRFLKSQIAKI--------------------PISLSESEAKATLHSDIER 431 (640)
Q Consensus 373 ~srdL~~~L~~~i~~L~~aRPtsvs-m~NAIr~lk~~I~~l--------------------~~~~~~~eaK~~L~e~Id~ 431 (640)
...+|.+.|..+-+...+-+|.|++ ++|+.+-+-+.++.. +...+.+|+.+...++-+.
T Consensus 210 ~~~~ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~~~i~~DlvtDQTSaHdp~~GY~P~g~t~ee~~~l~~~dp~~ 289 (551)
T 1x87_A 210 MTDSLDAALEMAKQAKEEKKALSIGLVGNAAEVLPRLVETGFVPDVLTDQTSAHDPLNGYIPAGLTLDEAAELRARDPKQ 289 (551)
T ss_dssp EESCHHHHHHHHHHHHHTTCCEEEEEESCHHHHHHHHHHTTCCCSEECCCSCTTCTTTTCCCTTCCHHHHHHHHHHCHHH
T ss_pred EcCCHHHHHHHHHHHHHcCCceEEEEeccHHHHHHHHHHCCCCCCCCCCCccccCcccccCCCCCCHHHHHHHHHhCHHH
Confidence 3456777777777778889999986 799988776666541 1234688999888888888
Q ss_pred HHHHHHHHHHHHHHHHHH---HhccCCCEEEeecCcHH-----------------HHHHHHHHHHcCCe-eEEEEcCCCC
Q 006577 432 FINEKIILADRVIVKHAV---TKIRDGDVLLTYGSSSA-----------------VEMILQHAHELGKQ-FRVVIVDSRP 490 (640)
Q Consensus 432 fi~E~i~~A~~~Ia~~a~---~~I~dgdvILT~g~Sst-----------------V~~vL~~A~e~Gk~-f~ViV~ESRP 490 (640)
|.+ .+.+.|.+|.. ++-..|..+.-|||+-. |..+|+-.+..|+. ||=+|+-..|
T Consensus 290 ~~~----~~~~Sm~rhv~am~~~~~~G~~~fDYGN~~r~~a~~aG~~~aF~~P~fV~~~irPlF~~G~GPFRWvalSGdp 365 (551)
T 1x87_A 290 YIA----RAKQSIAAHVRAMLAMQKQGAVTFDYGNNIRQVAKDEGVDDAFSFPGFVPAYIRPLFCEGKGPFRWVALSGDP 365 (551)
T ss_dssp HHH----HHHHHHHHHHHHHHHHHHTTCEECBCSSCHHHHHHHTTCTTGGGSCBHHHHTTHHHHHTTCEEEEEEETTCCH
T ss_pred HHH----HHHHHHHHHHHHHHHHHHCCCeeeeccHHHHHHHHhCChhhcCCCCccHHHHhhhHhhcCCCCceeEEcCCCH
Confidence 864 35666666653 44457888888888732 56677777777764 8888887777
Q ss_pred C
Q 006577 491 K 491 (640)
Q Consensus 491 ~ 491 (640)
.
T Consensus 366 e 366 (551)
T 1x87_A 366 E 366 (551)
T ss_dssp H
T ss_pred H
Confidence 4
No 194
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}
Probab=38.85 E-value=71 Score=31.37 Aligned_cols=103 Identities=11% Similarity=0.124 Sum_probs=58.6
Q ss_pred CEEEeecCcHHHHH-HHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEe--c-hHHHHHhhhccEEEEcce
Q 006577 456 DVLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH--I-NAISYIIHEVTRVFLGAS 531 (640)
Q Consensus 456 dvILT~g~SstV~~-vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~--D-sAv~~iM~~VdkVlvGAD 531 (640)
.+||..|-++.+-. +++.+.++| .+|+++.-++... ..|.+.++.+...- | .++..+++.+|.||--|-
T Consensus 14 M~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~-----~~l~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~a~ 86 (342)
T 2x4g_A 14 VKYAVLGATGLLGHHAARAIRAAG--HDLVLIHRPSSQI-----QRLAYLEPECRVAEMLDHAGLERALRGLDGVIFSAG 86 (342)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTT--CEEEEEECTTSCG-----GGGGGGCCEEEECCTTCHHHHHHHTTTCSEEEEC--
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC--CEEEEEecChHhh-----hhhccCCeEEEEecCCCHHHHHHHHcCCCEEEECCc
Confidence 47888898877644 445555666 5677765444321 12333355433221 2 356677888998887664
Q ss_pred eEecC-CC-----eecccchHHHHHHHhhCCCcEEEeccc
Q 006577 532 SVLSN-GT-----VCSRVGTACVAMVAYGFHIPVLVCCEA 565 (640)
Q Consensus 532 aIlaN-G~-----VvNKiGT~~lAlaAk~~~VPVyV~aet 565 (640)
..... .. -+|-.||..+.-+|+.+++.-+|.+.+
T Consensus 87 ~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS 126 (342)
T 2x4g_A 87 YYPSRPRRWQEEVASALGQTNPFYAACLQARVPRILYVGS 126 (342)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHTCSCEEEECC
T ss_pred cCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECC
Confidence 32110 11 146779999999999888755554443
No 195
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=38.68 E-value=2.2e+02 Score=25.64 Aligned_cols=37 Identities=5% Similarity=-0.059 Sum_probs=30.3
Q ss_pred chHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEE
Q 006577 492 HEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFL 528 (640)
Q Consensus 492 ~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlv 528 (640)
.+=.++++.+.+.|+++..|+++.-+.+-+.+|.+|.
T Consensus 124 ~~~~~~~~~ak~~g~~vi~iT~~~~s~L~~~ad~~l~ 160 (188)
T 1tk9_A 124 PNVLEALKKAKELNMLCLGLSGKGGGMMNKLCDHNLV 160 (188)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEGGGTTHHHHCSEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCcchHHcCCEEEE
Confidence 3445667888899999999999888888888998874
No 196
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=38.67 E-value=2.8e+02 Score=26.76 Aligned_cols=97 Identities=11% Similarity=0.044 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHcCCeeEEEEcCCCCCchHHHH----HHHHHhCCCceEEEec---hHHHHHhh-----hccEEEEcceeE
Q 006577 466 AVEMILQHAHELGKQFRVVIVDSRPKHEGKLL----LRRLVRKGLSCTYTHI---NAISYIIH-----EVTRVFLGASSV 533 (640)
Q Consensus 466 tV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~L----a~eL~~~GI~vTlI~D---sAv~~iM~-----~VdkVlvGADaI 533 (640)
.+...+.-|...|..++++-+.. | .+..+. ...+...|++++.... .....++. .+|+|++|...-
T Consensus 23 al~~A~~la~~~~a~l~ll~v~~-~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dliV~G~~~~ 100 (290)
T 3mt0_A 23 ALKRAQLIAGVTQSHLHLLVCEK-R-RDHSAALNDLAQELREEGYSVSTNQAWKDSLHQTIIAEQQAEGCGLIIKQHFPD 100 (290)
T ss_dssp HHHHHHHHHHHHCCEEEEEEECS-S-SCCHHHHHHHHHHHHHTTCCEEEEEECSSSHHHHHHHHHHHHTCSEEEEECCCS
T ss_pred HHHHHHHHHHhcCCeEEEEEeeC-c-HHHHHHHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhcCCCEEEEecccC
Confidence 35555566666677777654433 3 233322 3566678999887542 23333333 599999998753
Q ss_pred ecCCCeec-ccchHHHHHHHhhCCCcEEEecccccc
Q 006577 534 LSNGTVCS-RVGTACVAMVAYGFHIPVLVCCEAYKF 568 (640)
Q Consensus 534 laNG~VvN-KiGT~~lAlaAk~~~VPVyV~aetyKf 568 (640)
|.+-. -.|+..-.+ .++.++||+|+-+...+
T Consensus 101 ---~~~~~~~~gs~~~~v-l~~~~~PVlvv~~~~~~ 132 (290)
T 3mt0_A 101 ---NPLKKAILTPDDWKL-LRFAPCPVLMTKTARPW 132 (290)
T ss_dssp ---CTTSTTSCCHHHHHH-HHHCSSCEEEECCCSCS
T ss_pred ---CchhhcccCHHHHHH-HhcCCCCEEEecCCCCC
Confidence 22222 256655544 56788999998644443
No 197
>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A
Probab=38.50 E-value=62 Score=31.52 Aligned_cols=100 Identities=13% Similarity=0.090 Sum_probs=49.3
Q ss_pred CCEEEeecCcHHHHH-HHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhh--ccEEEEcce
Q 006577 455 GDVLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHE--VTRVFLGAS 531 (640)
Q Consensus 455 gdvILT~g~SstV~~-vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~--VdkVlvGAD 531 (640)
+.+||..|-++.+-. +++.+.++| .+|+++.-++...+ -+.+-+.....+..++.. +|.||--|-
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~----------~~~~Dl~d~~~~~~~~~~~~~d~vih~A~ 69 (315)
T 2ydy_A 2 NRRVLVTGATGLLGRAVHKEFQQNN--WHAVGCGFRRARPK----------FEQVNLLDSNAVHHIIHDFQPHVIVHCAA 69 (315)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHTTT--CEEEEEC----------------------------CHHHHHHHCCSEEEECC-
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCC--CeEEEEccCCCCCC----------eEEecCCCHHHHHHHHHhhCCCEEEECCc
Confidence 357888888877654 444555555 67777753222111 111222222334445554 788877664
Q ss_pred eEecC--------CCeecccchHHHHHHHhhCCCcEEEecccc
Q 006577 532 SVLSN--------GTVCSRVGTACVAMVAYGFHIPVLVCCEAY 566 (640)
Q Consensus 532 aIlaN--------G~VvNKiGT~~lAlaAk~~~VPVyV~aety 566 (640)
....+ -.-+|-.||..+.-+|+.+++.|+.++...
T Consensus 70 ~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS~~ 112 (315)
T 2ydy_A 70 ERRPDVVENQPDAASQLNVDASGNLAKEAAAVGAFLIYISSDY 112 (315)
T ss_dssp ------------------CHHHHHHHHHHHHHTCEEEEEEEGG
T ss_pred ccChhhhhcCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEchHH
Confidence 32211 112478899999999988888766655443
No 198
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Probab=38.49 E-value=87 Score=30.34 Aligned_cols=96 Identities=14% Similarity=0.076 Sum_probs=51.7
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEec--------hHHHHHhh--hccE
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--------NAISYIIH--EVTR 525 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D--------sAv~~iM~--~Vdk 525 (640)
.+++|.|-+..+..+++.+.+ -+|++. .|.+.|..+...+...|+.+..+.- ..+-..+. ++..
T Consensus 54 ~v~~t~g~t~a~~~~~~~~~~----d~vl~~--~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~ 127 (353)
T 2yrr_A 54 VAALAGSGSLGMEAGLANLDR----GPVLVL--VNGAFSQRVAEMAALHGLDPEVLDFPPGEPVDPEAVARALKRRRYRM 127 (353)
T ss_dssp EEEESSCHHHHHHHHHHTCSC----CCEEEE--ECSHHHHHHHHHHHHTTCCEEEEECCTTSCCCHHHHHHHHHHSCCSE
T ss_pred eEEEcCCcHHHHHHHHHHhcC----CcEEEE--cCCCchHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHHhCCCCE
Confidence 456665555555555544422 245554 3344444333445667888877652 12333333 3455
Q ss_pred EEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 526 VFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 526 VlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
|++ ...-...|.+.. --.++-+|++|++.+++
T Consensus 128 v~~-~~~~nptG~~~~---~~~i~~l~~~~~~~li~ 159 (353)
T 2yrr_A 128 VAL-VHGETSTGVLNP---AEAIGALAKEAGALFFL 159 (353)
T ss_dssp EEE-ESEETTTTEECC---HHHHHHHHHHHTCEEEE
T ss_pred EEE-EccCCCcceecC---HHHHHHHHHHcCCeEEE
Confidence 544 333334566654 34677788999987776
No 199
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=38.36 E-value=81 Score=30.65 Aligned_cols=71 Identities=18% Similarity=0.125 Sum_probs=41.4
Q ss_pred EEEeecCcHHHHHHHHHHHHcCC-eeEEEEcC-CCCCchHHHHHHHHHhCCCceEEEe----------chHHHHHhh--h
Q 006577 457 VLLTYGSSSAVEMILQHAHELGK-QFRVVIVD-SRPKHEGKLLLRRLVRKGLSCTYTH----------INAISYIIH--E 522 (640)
Q Consensus 457 vILT~g~SstV~~vL~~A~e~Gk-~f~ViV~E-SRP~~eG~~La~eL~~~GI~vTlI~----------DsAv~~iM~--~ 522 (640)
.||..|+.+....+|... ++|. .++|..+= .+|...|.+.| .+.||++.++. |..+...++ +
T Consensus 4 ~vl~Sg~gsnl~ali~~~-~~~~~~~~i~~Vis~~~~~~~~~~A---~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~ 79 (212)
T 1jkx_A 4 VVLISGNGSNLQAIIDAC-KTNKIKGTVRAVFSNKADAFGLERA---RQAGIATHTLIASAFDSREAYDRELIHEIDMYA 79 (212)
T ss_dssp EEEESSCCHHHHHHHHHH-HTTSSSSEEEEEEESCTTCHHHHHH---HHTTCEEEECCGGGCSSHHHHHHHHHHHHGGGC
T ss_pred EEEEECCcHHHHHHHHHH-HcCCCCceEEEEEeCCCchHHHHHH---HHcCCcEEEeCcccccchhhccHHHHHHHHhcC
Confidence 466767777766666554 4443 35543333 34555564443 56799998865 234444455 6
Q ss_pred ccEEEEcce
Q 006577 523 VTRVFLGAS 531 (640)
Q Consensus 523 VdkVlvGAD 531 (640)
+|.+++.+-
T Consensus 80 ~Dliv~agy 88 (212)
T 1jkx_A 80 PDVVVLAGF 88 (212)
T ss_dssp CSEEEESSC
T ss_pred CCEEEEeCh
Confidence 788877543
No 200
>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*
Probab=38.29 E-value=20 Score=35.57 Aligned_cols=109 Identities=9% Similarity=0.074 Sum_probs=60.3
Q ss_pred CEEEeecCcHHHHH-HHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEE--ec-hHHHHHhhhccEEEEcce
Q 006577 456 DVLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT--HI-NAISYIIHEVTRVFLGAS 531 (640)
Q Consensus 456 dvILT~g~SstV~~-vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI--~D-sAv~~iM~~VdkVlvGAD 531 (640)
.+||..|-++.+-. +++.+.++|...+|++++-++...-...+..+...++.+... +| .++..++..+|.||--|-
T Consensus 5 ~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A~ 84 (348)
T 1oc2_A 5 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILGDRVELVVGDIADAELVDKLAAKADAIVHYAA 84 (348)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGTGGGCSSSEEEEECCTTCHHHHHHHHTTCSEEEECCS
T ss_pred cEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCCCCCCChhHHhhhccCCeEEEECCCCCHHHHHHHhhcCCEEEECCc
Confidence 46888888876644 445555664456788775443211111112222223332221 12 356677788888887664
Q ss_pred eEec-----CC---CeecccchHHHHHHHhhCCCcEEEecc
Q 006577 532 SVLS-----NG---TVCSRVGTACVAMVAYGFHIPVLVCCE 564 (640)
Q Consensus 532 aIla-----NG---~VvNKiGT~~lAlaAk~~~VPVyV~ae 564 (640)
.... +- --+|-.||..+.-+|+.+++.|+.++.
T Consensus 85 ~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~v~~SS 125 (348)
T 1oc2_A 85 ESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRFHHVST 125 (348)
T ss_dssp CCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTCEEEEEEE
T ss_pred ccCccchhhCHHHHHHHHHHHHHHHHHHHHHhCCeEEEecc
Confidence 3211 00 124678999999999988885555543
No 201
>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*
Probab=38.13 E-value=1.8e+02 Score=29.55 Aligned_cols=100 Identities=15% Similarity=0.088 Sum_probs=53.3
Q ss_pred CEEEeecCcHHHHHHHH--HHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEec----------hHHHHHhh--
Q 006577 456 DVLLTYGSSSAVEMILQ--HAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI----------NAISYIIH-- 521 (640)
Q Consensus 456 dvILT~g~SstV~~vL~--~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D----------sAv~~iM~-- 521 (640)
.+++|.|.+..+..+++ .....|. +|++. .|.+.+.. ..+...|..+..+.- ..+-..+.
T Consensus 119 ~i~~t~G~t~al~~~~~~~~~~~~gd--~Vlv~--~p~~~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~ 192 (420)
T 4f4e_A 119 VTAQALGGTGALKIGADFLRTLNPKA--KVAIS--DPSWENHR--ALFDMAGFEVVAYPYYDAKTNGVNFDGMLAALNGY 192 (420)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHHCTTC--CEEEE--ESCCHHHH--HHHHHTTCCEEEEECEETTTTEECHHHHHHHHTTC
T ss_pred EEEECCccHHHHHHHHHHHHHhCCCC--EEEEe--CCCcHhHH--HHHHHcCCeEEEeeeeccccCccCHHHHHHHHHhC
Confidence 57888777777666633 2233343 45554 36666643 334446777766642 12333333
Q ss_pred -hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 522 -EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 522 -~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
.-+++++=...--..|.+++.---..|+-+|+.|++.+++
T Consensus 193 ~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~ 233 (420)
T 4f4e_A 193 EPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFL 233 (420)
T ss_dssp CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEE
Confidence 2234433222223345444444444677788899987776
No 202
>1poi_B Glutaconate coenzyme A-transferase; COA, glutamate, protein fermentation; 2.50A {Acidaminococcus fermentans} SCOP: c.124.1.3
Probab=38.08 E-value=1.3e+02 Score=30.17 Aligned_cols=93 Identities=15% Similarity=0.234 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhccCCCEEEe-ecCcHHHHHHHHHHHHcCCeeEEEE----cCCCCCc---hHHHHHHHHHhCCCceEEEe
Q 006577 441 DRVIVKHAVTKIRDGDVLLT-YGSSSAVEMILQHAHELGKQFRVVI----VDSRPKH---EGKLLLRRLVRKGLSCTYTH 512 (640)
Q Consensus 441 ~~~Ia~~a~~~I~dgdvILT-~g~SstV~~vL~~A~e~Gk~f~ViV----~ESRP~~---eG~~La~eL~~~GI~vTlI~ 512 (640)
.+.|+.+++..|+||++|-+ +|-...|..++...+ ++.+.+.. +...|.. .+.. ..|.. .+..+.
T Consensus 8 ~e~Ia~~aA~~i~dG~~v~lGiGiP~~va~~~~~~~--~~~l~l~~E~G~lg~~p~~~~~~~~d--~~~~~---~a~~~~ 80 (260)
T 1poi_B 8 KEMQAVTIAKQIKNGQVVTVGTGLPLIGASVAKRVY--APDCHIIVESGLMDCSPVEVPRSVGD--LRFMA---HCGCIW 80 (260)
T ss_dssp HHHHHHHHHTTCCTTCEEECCSSHHHHHHHHHHHTT--CTTCEEEETTTEEEECCSSCCSSTTC--HHHHT---SEEEEC
T ss_pred HHHHHHHHHHhCCCCCEEEeCCCHHHHHHHHHHHhc--CCCEEEEEeCceecCcccCcccCccC--CCcEe---ehhhhc
Confidence 45799999999999998876 453333444444432 34554442 2223321 1100 11111 243556
Q ss_pred chHHHHH------hh--hccEEEEcceeEecCCCee
Q 006577 513 INAISYI------IH--EVTRVFLGASSVLSNGTVC 540 (640)
Q Consensus 513 DsAv~~i------M~--~VdkVlvGADaIlaNG~Vv 540 (640)
++.-.|- +. ++|..|+||--|-.+|.+.
T Consensus 81 ~~~~~fd~~~~~~~~~g~~Dv~ilGa~qVD~~Gnvn 116 (260)
T 1poi_B 81 PNVRFVGFEINEYLHKANRLIAFIGGAQIDPYGNVN 116 (260)
T ss_dssp CHHHHHHHHHHHHHHTCCCEEEEECCSEECTTCCEE
T ss_pred CHHHHhcccchhhhhcCCccEEEeChHHhCCCCCcc
Confidence 6554433 33 7999999999999999998
No 203
>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*
Probab=37.69 E-value=87 Score=29.82 Aligned_cols=99 Identities=12% Similarity=0.132 Sum_probs=52.0
Q ss_pred EEeecCcHHHHHHH-HHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEE--ec-hHHHHHhhhccEEEEcceeE
Q 006577 458 LLTYGSSSAVEMIL-QHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT--HI-NAISYIIHEVTRVFLGASSV 533 (640)
Q Consensus 458 ILT~g~SstV~~vL-~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI--~D-sAv~~iM~~VdkVlvGADaI 533 (640)
||..|-++.+-..| +.+.++...++|+++.-++... ..|...++.+... .| ..+..+++.+|.||--|-..
T Consensus 2 ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~-----~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~~~ 76 (286)
T 2zcu_A 2 IAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKA-----QALAAQGITVRQADYGDEAALTSALQGVEKLLLISSSE 76 (286)
T ss_dssp EEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTC-----HHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECC---
T ss_pred EEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhh-----hhhhcCCCeEEEcCCCCHHHHHHHHhCCCEEEEeCCCC
Confidence 67778777664444 4444431135676665444321 2333455543321 12 45666777888887654321
Q ss_pred ecCCCeecccchHHHHHHHhhCCCcEEEeccc
Q 006577 534 LSNGTVCSRVGTACVAMVAYGFHIPVLVCCEA 565 (640)
Q Consensus 534 laNG~VvNKiGT~~lAlaAk~~~VPVyV~aet 565 (640)
.+ .|-.||..+.-+|+..+++-+|...+
T Consensus 77 -~~---~~~~~~~~l~~a~~~~~~~~~v~~Ss 104 (286)
T 2zcu_A 77 -VG---QRAPQHRNVINAAKAAGVKFIAYTSL 104 (286)
T ss_dssp ---------CHHHHHHHHHHHHTCCEEEEEEE
T ss_pred -ch---HHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 11 35568888887888778765555443
No 204
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=37.58 E-value=23 Score=36.64 Aligned_cols=71 Identities=14% Similarity=0.231 Sum_probs=46.8
Q ss_pred ccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEe----chHHHHHhhhccEEE
Q 006577 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH----INAISYIIHEVTRVF 527 (640)
Q Consensus 452 I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~----DsAv~~iM~~VdkVl 527 (640)
+..+.+|+..|....-..+++.|++.| ++|++++..|...+..++ + -.++. ..++..+.+++|.|+
T Consensus 9 ~~~~~~IlIlG~G~lg~~la~aa~~lG--~~viv~d~~~~~p~~~~a----d----~~~~~~~~d~~~l~~~~~~~dvi~ 78 (377)
T 3orq_A 9 LKFGATIGIIGGGQLGKMMAQSAQKMG--YKVVVLDPSEDCPCRYVA----H----EFIQAKYDDEKALNQLGQKCDVIT 78 (377)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCTTCTTGGGS----S----EEEECCTTCHHHHHHHHHHCSEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEECCCCChhhhhC----C----EEEECCCCCHHHHHHHHHhCCcce
Confidence 456789999999998888889998876 578888877764433322 1 12222 134555566788877
Q ss_pred Eccee
Q 006577 528 LGASS 532 (640)
Q Consensus 528 vGADa 532 (640)
.+-+.
T Consensus 79 ~~~E~ 83 (377)
T 3orq_A 79 YEFEN 83 (377)
T ss_dssp ESSTT
T ss_pred ecccc
Confidence 76543
No 205
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1
Probab=37.40 E-value=2.1e+02 Score=28.43 Aligned_cols=99 Identities=17% Similarity=0.194 Sum_probs=51.4
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEech---------HHHHHhh-hccE
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN---------AISYIIH-EVTR 525 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds---------Av~~iM~-~Vdk 525 (640)
.+++|.|.+..+..++..+.+.| -+|++.+ |.+.|.. ..+...|+.+..+... .+-..+. ++..
T Consensus 93 ~v~~~~g~~~a~~~~~~~~~~~g--d~vl~~~--p~~~~~~--~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~ 166 (386)
T 1u08_A 93 DITVTAGATEALYAAITALVRNG--DEVICFD--PSYDSYA--PAIALSGGIVKRMALQPPHFRVDWQEFAALLSERTRL 166 (386)
T ss_dssp TEEEESSHHHHHHHHHHHHCCTT--CEEEEEE--SCCTTHH--HHHHHTTCEEEEEECCTTTCCCCHHHHHHHCCTTEEE
T ss_pred CEEEcCChHHHHHHHHHHhCCCC--CEEEEeC--CCchhHH--HHHHHcCCEEEEeecCcccCcCCHHHHHHhhcccCEE
Confidence 67777777777766666554333 3555543 4444433 2344568877766521 1222222 3444
Q ss_pred EEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 526 VFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 526 VlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
|++- ..-...|.++..-=-..|+-+|++|++.+++
T Consensus 167 v~l~-~p~nptG~~~~~~~l~~i~~~~~~~~~~li~ 201 (386)
T 1u08_A 167 VILN-TPHNPSATVWQQADFAALWQAIAGHEIFVIS 201 (386)
T ss_dssp EEEE-SSCTTTCCCCCHHHHHHHHHHHTTSCCEEEE
T ss_pred EEEe-CCCCCCCccCCHHHHHHHHHHHHHcCcEEEE
Confidence 4432 2112234333221124566788999997776
No 206
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=37.35 E-value=1.3e+02 Score=25.05 Aligned_cols=77 Identities=18% Similarity=0.168 Sum_probs=43.4
Q ss_pred CCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechH--HHHHhh-hccEEEEcceeEecCCCeecccchHHHHHHHhh
Q 006577 478 GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA--ISYIIH-EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYG 554 (640)
Q Consensus 478 Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsA--v~~iM~-~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~ 554 (640)
....+|+|+|..+.. ...|...|...|+.|....+.. +..+-. ..|.|| +.+. -|--.+..+-+.
T Consensus 16 ~~~~~ilivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvi------~~~~-----~g~~~~~~l~~~ 83 (137)
T 2pln_A 16 RGSMRVLLIEKNSVL-GGEIEKGLNVKGFMADVTESLEDGEYLMDIRNYDLVM------VSDK-----NALSFVSRIKEK 83 (137)
T ss_dssp TTCSEEEEECSCHHH-HHHHHHHHHHTTCEEEEESCHHHHHHHHHHSCCSEEE------ECST-----THHHHHHHHHHH
T ss_pred CCCCeEEEEeCCHHH-HHHHHHHHHHcCcEEEEeCCHHHHHHHHHcCCCCEEE------EcCc-----cHHHHHHHHHhc
Confidence 456678888776653 2334566777788777555432 222222 467777 2222 233334444333
Q ss_pred C-CCcEEEecccc
Q 006577 555 F-HIPVLVCCEAY 566 (640)
Q Consensus 555 ~-~VPVyV~aety 566 (640)
. ++|+++++...
T Consensus 84 ~~~~~ii~ls~~~ 96 (137)
T 2pln_A 84 HSSIVVLVSSDNP 96 (137)
T ss_dssp STTSEEEEEESSC
T ss_pred CCCccEEEEeCCC
Confidence 5 89999987653
No 207
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=37.22 E-value=2.2e+02 Score=27.64 Aligned_cols=62 Identities=10% Similarity=0.013 Sum_probs=36.4
Q ss_pred HHHHhCCCc---eEEEechHHHHHhh-----hccEEEEcceeEecCCCeec-ccchHHHHHHHhhCCCcEEEecc
Q 006577 499 RRLVRKGLS---CTYTHINAISYIIH-----EVTRVFLGASSVLSNGTVCS-RVGTACVAMVAYGFHIPVLVCCE 564 (640)
Q Consensus 499 ~eL~~~GI~---vTlI~DsAv~~iM~-----~VdkVlvGADaIlaNG~VvN-KiGT~~lAlaAk~~~VPVyV~ae 564 (640)
..+.+.|++ +.+...+..-.++. ++|++++|+.. .|.+-. -.|+..-.+ .++-.+||+|+=+
T Consensus 235 ~~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dLiV~G~~g---~~~~~~~~~Gsv~~~v-l~~~~~pVLvv~~ 305 (319)
T 3olq_A 235 ELRQKFSIPEEKTHVKEGLPEQVIPQVCEELNAGIVVLGILG---RTGLSAAFLGNTAEQL-IDHIKCDLLAIKP 305 (319)
T ss_dssp HHHHHTTCCGGGEEEEESCHHHHHHHHHHHTTEEEEEEECCS---CCSTHHHHHHHHHHHH-HTTCCSEEEEECC
T ss_pred HHHHHhCCCcccEEEecCCcHHHHHHHHHHhCCCEEEEeccC---ccCCccccccHHHHHH-HhhCCCCEEEECC
Confidence 444567763 44555544444444 68999999864 222221 245444343 4667899999843
No 208
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=37.03 E-value=1.9e+02 Score=24.36 Aligned_cols=57 Identities=12% Similarity=0.057 Sum_probs=34.0
Q ss_pred HHhCCCce--EEEe-chHHHHHhh-----hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEec
Q 006577 501 LVRKGLSC--TYTH-INAISYIIH-----EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (640)
Q Consensus 501 L~~~GI~v--TlI~-DsAv~~iM~-----~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~a 563 (640)
+.+.|+++ +.+. ......++. ++|+|++|.+ . + . ..+.|+.. --+.++-++||+|+-
T Consensus 73 ~~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~--~-~-~-~~~lgs~~-~~vl~~~~~pVlvv~ 137 (141)
T 1jmv_A 73 AESVDYPISEKLSGSGDLGQVLSDAIEQYDVDLLVTGHH--Q-D-F-WSKLMSST-RQVMNTIKIDMLVVP 137 (141)
T ss_dssp HHHSSSCCCCEEEEEECHHHHHHHHHHHTTCCEEEEEEC--C-C-C-HHHHHHHH-HHHHTTCCSEEEEEE
T ss_pred HHHcCCCceEEEEecCCHHHHHHHHHHhcCCCEEEEeCC--C-c-h-hhhhcchH-HHHHhcCCCCEEEee
Confidence 34568875 2333 333333333 4999999987 2 2 2 34467433 345667789999973
No 209
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=36.86 E-value=1e+02 Score=32.23 Aligned_cols=98 Identities=17% Similarity=0.142 Sum_probs=51.7
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHH-H-HHHHhCCCceEEEech---HHHHHhh-hccEEEEc
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLL-L-RRLVRKGLSCTYTHIN---AISYIIH-EVTRVFLG 529 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~L-a-~eL~~~GI~vTlI~Ds---Av~~iM~-~VdkVlvG 529 (640)
+.|+|-+-+..+..+|..+.+.| -+|++. .|.+.|... . ..+...|+.+.++... ++-..+. ++..|++
T Consensus 98 ~~~~~~sG~~Ai~~al~~l~~~G--d~Vi~~--~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~ai~~~t~~v~l- 172 (414)
T 3ndn_A 98 AAFATASGMAAVFTSLGALLGAG--DRLVAA--RSLFGSCFVVCSEILPRWGVQTVFVDGDDLSQWERALSVPTQAVFF- 172 (414)
T ss_dssp EEEEESSHHHHHHHHHHTTCCTT--CEEEEE--SCCCHHHHHHHHTHHHHTTCEEEEECTTCHHHHHHHTSSCCSEEEE-
T ss_pred cEEEECCHHHHHHHHHHHHhCCC--CEEEEc--CCccchHHHHHHHHHHHcCcEEEEeCCCCHHHHHHhcCCCCeEEEE-
Confidence 34444333344444454443334 345544 455555433 3 3356689999988643 2333333 4556655
Q ss_pred ceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 530 ADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
..---..|.+.. --.|+-+|+.|+++++|
T Consensus 173 e~p~NptG~~~~---l~~i~~la~~~g~~liv 201 (414)
T 3ndn_A 173 ETPSNPMQSLVD---IAAVTELAHAAGAKVVL 201 (414)
T ss_dssp ESSCTTTCCCCC---HHHHHHHHHHTTCEEEE
T ss_pred ECCCCCCCcccc---HHHHHHHHHHcCCEEEE
Confidence 211122344432 34677789999998887
No 210
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1
Probab=36.84 E-value=1.1e+02 Score=30.54 Aligned_cols=101 Identities=17% Similarity=0.121 Sum_probs=52.6
Q ss_pred CCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEech----------HHHHHhh-h
Q 006577 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN----------AISYIIH-E 522 (640)
Q Consensus 454 dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds----------Av~~iM~-~ 522 (640)
...+++|.|-+..+..+++.+.+.|. +|++. .|.+.+... .+...|+.+..+... .+-..+. +
T Consensus 90 ~~~v~~~~g~~~a~~~~~~~~~~~gd--~vl~~--~~~~~~~~~--~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~ 163 (388)
T 1j32_A 90 ADNILVTNGGKQSIFNLMLAMIEPGD--EVIIP--APFWVSYPE--MVKLAEGTPVILPTTVETQFKVSPEQIRQAITPK 163 (388)
T ss_dssp GGGEEEESHHHHHHHHHHHHHCCTTC--EEEEE--SSCCTHHHH--HHHHTTCEEEEECCCGGGTTCCCHHHHHHHCCTT
T ss_pred hhhEEEcCCHHHHHHHHHHHhcCCCC--EEEEc--CCCChhHHH--HHHHcCCEEEEecCCcccCCCCCHHHHHHhcCcC
Confidence 34677777767777766666644443 55554 345555433 344568877766522 1222222 2
Q ss_pred ccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 523 VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 523 VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
+..|++ ...--..|.++..-=-..++-+|++|++.+++
T Consensus 164 ~~~v~~-~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~ 201 (388)
T 1j32_A 164 TKLLVF-NTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLS 201 (388)
T ss_dssp EEEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred ceEEEE-eCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEE
Confidence 333433 22111234443322223566688899998876
No 211
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Probab=36.81 E-value=2.3e+02 Score=29.06 Aligned_cols=98 Identities=10% Similarity=0.080 Sum_probs=52.9
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHH-H-HHHhCCCceEEEec---hHHHHHhh-hccEEEEc
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL-R-RLVRKGLSCTYTHI---NAISYIIH-EVTRVFLG 529 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La-~-eL~~~GI~vTlI~D---sAv~~iM~-~VdkVlvG 529 (640)
+.|++-+.+..+..++....+.| -+|++. .|.+.+.... . .+...|+.+.++.. ..+-..+. ++..|++
T Consensus 79 ~~i~~~~g~~ai~~~~~~l~~~g--d~Vl~~--~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~t~~v~l- 153 (404)
T 1e5e_A 79 ACVATSSGMGAIAATVLTILKAG--DHLISD--ECLYGCTHALFEHALTKFGIQVDFINTAIPGEVKKHMKPNTKIVYF- 153 (404)
T ss_dssp EEEEESSHHHHHHHHHHHHCCTT--CEEEEE--SCCCHHHHHHHHTHHHHTTCEEEEECTTSTTHHHHHCCTTEEEEEE-
T ss_pred cEEEeCChHHHHHHHHHHHhCCC--CEEEEe--CCCchhHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCCCCcEEEE-
Confidence 45555444444444444443334 355554 5666654332 2 46678999888863 23333343 3334443
Q ss_pred ceeEecCCCeecccchHHHHHHHhh-CCCcEEE
Q 006577 530 ASSVLSNGTVCSRVGTACVAMVAYG-FHIPVLV 561 (640)
Q Consensus 530 ADaIlaNG~VvNKiGT~~lAlaAk~-~~VPVyV 561 (640)
..---..|.+.. --.|+-+|++ +++.|++
T Consensus 154 ~~p~NptG~v~~---l~~i~~la~~~~~~~li~ 183 (404)
T 1e5e_A 154 ETPANPTLKIID---MERVCKDAHSQEGVLVIA 183 (404)
T ss_dssp ESSCTTTCCCCC---HHHHHHHHHTSTTCEEEE
T ss_pred ECCCCCCCcccC---HHHHHHHHHhhcCCEEEE
Confidence 222223455543 3567778999 9998876
No 212
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*
Probab=36.75 E-value=1.5e+02 Score=30.22 Aligned_cols=103 Identities=17% Similarity=0.169 Sum_probs=54.7
Q ss_pred ccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHH-hCCCceEEEech----------HHHHHh
Q 006577 452 IRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLV-RKGLSCTYTHIN----------AISYII 520 (640)
Q Consensus 452 I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~-~~GI~vTlI~Ds----------Av~~iM 520 (640)
+....+++|-|.+..+..+++.+.+.| -+|++. +|.+.|... .+. ..|+.+..+... .+-..+
T Consensus 106 ~~~~~i~~~~G~~~ai~~~~~~~~~~g--d~Vl~~--~p~y~~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l 179 (428)
T 1iay_A 106 FDPERVVMAGGATGANETIIFCLADPG--DAFLVP--SPYYPAFNR--DLRWRTGVQLIPIHCESSNNFKITSKAVKEAY 179 (428)
T ss_dssp CCTTSCEEEEHHHHHHHHHHHHHCCTT--CEEEEE--SSCCTTHHH--HTTTTTCCEEEEECCCTTTTTCCCHHHHHHHH
T ss_pred CChhhEEEccChHHHHHHHHHHhCCCC--CeEEEc--cCCCcchHH--HHHHhcCCEEEEeecCCccCCcCCHHHHHHHH
Confidence 334567888777777666666554434 355554 455655432 232 368777766421 122223
Q ss_pred h-------hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 521 H-------EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 521 ~-------~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
. ++..|++ +.--...|.++.+-=-..++-+|+.|++.+++
T Consensus 180 ~~~~~~~~~~~~v~l-~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 226 (428)
T 1iay_A 180 ENAQKSNIKVKGLIL-TNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVC 226 (428)
T ss_dssp HHHHHTTCCEEEEEE-ESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEE
T ss_pred HHHHhcCCceEEEEE-cCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEE
Confidence 2 2344444 22222345554432234466678899998776
No 213
>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A
Probab=36.70 E-value=74 Score=32.03 Aligned_cols=31 Identities=10% Similarity=0.102 Sum_probs=15.4
Q ss_pred EEEeecCcHHHHH-HHHHHHHcCCeeEEEEcCC
Q 006577 457 VLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDS 488 (640)
Q Consensus 457 vILT~g~SstV~~-vL~~A~e~Gk~f~ViV~ES 488 (640)
+||..|-++.+-. +++.+.++|. ++|++++-
T Consensus 2 ~VlVtGatG~iG~~l~~~L~~~g~-~~v~~~d~ 33 (369)
T 3st7_A 2 NIVITGAKGFVGKNLKADLTSTTD-HHIFEVHR 33 (369)
T ss_dssp EEEEETTTSHHHHHHHHHHHHHCC-CEEEECCT
T ss_pred EEEEECCCCHHHHHHHHHHHhCCC-CEEEEECC
Confidence 4666676665433 3333444442 35555543
No 214
>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D
Probab=36.48 E-value=85 Score=30.01 Aligned_cols=102 Identities=10% Similarity=0.094 Sum_probs=58.5
Q ss_pred EEEeecCcHHHHHHH-HHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEE--ec-hHHHHHhhhccEEEEccee
Q 006577 457 VLLTYGSSSAVEMIL-QHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT--HI-NAISYIIHEVTRVFLGASS 532 (640)
Q Consensus 457 vILT~g~SstV~~vL-~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI--~D-sAv~~iM~~VdkVlvGADa 532 (640)
+||..|-++.+-.-| +.+.++...++|+++.-++.. +..|...++.+... .| ..+..++.++|.||--|-.
T Consensus 2 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~-----~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~~ 76 (287)
T 2jl1_A 2 SIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEK-----ASTLADQGVEVRHGDYNQPESLQKAFAGVSKLLFISGP 76 (287)
T ss_dssp CEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTT-----THHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECCCC
T ss_pred eEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHH-----HhHHhhcCCeEEEeccCCHHHHHHHHhcCCEEEEcCCC
Confidence 477778877665444 444444113567766544321 12344456543322 12 4566677788888865532
Q ss_pred EecCCCeecccchHHHHHHHhhCCCcEEEeccc
Q 006577 533 VLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEA 565 (640)
Q Consensus 533 IlaNG~VvNKiGT~~lAlaAk~~~VPVyV~aet 565 (640)
- -+.-+|-.||..+.-+|+..++.-+|...+
T Consensus 77 ~--~~~~~n~~~~~~l~~a~~~~~~~~~v~~Ss 107 (287)
T 2jl1_A 77 H--YDNTLLIVQHANVVKAARDAGVKHIAYTGY 107 (287)
T ss_dssp C--SCHHHHHHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred C--cCchHHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 1 111236778999888899889866655444
No 215
>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*
Probab=36.47 E-value=1.7e+02 Score=29.68 Aligned_cols=98 Identities=15% Similarity=0.127 Sum_probs=52.7
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHH-HH-HHhCCCceEEEechHHHHH---hh-hccEEEEc
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL-RR-LVRKGLSCTYTHINAISYI---IH-EVTRVFLG 529 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La-~e-L~~~GI~vTlI~DsAv~~i---M~-~VdkVlvG 529 (640)
+.|++-+-+..+..+|+.+.+.| -+|++. .|.+.+.... .. +...|+.+.++.......+ +. ++..|++
T Consensus 81 ~~i~~~sG~~a~~~~l~~~~~~g--d~vi~~--~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~~~v~~- 155 (398)
T 2rfv_A 81 AGLATASGISAITTTLLTLCQQG--DHIVSA--SAIYGCTHAFLSHSMPKFGINVRFVDAAKPEEIRAAMRPETKVVYI- 155 (398)
T ss_dssp EEEEESSHHHHHHHHHHHHCCTT--CEEEEE--SSSCHHHHHHHHTHHHHTTCEEEEECTTSHHHHHHHCCTTEEEEEE-
T ss_pred cEEEECCHHHHHHHHHHHHhCCC--CEEEEc--CCCcccHHHHHHHHHHHcCCEEEEeCCCCHHHHHHhcCCCCeEEEE-
Confidence 45655544444455555544333 355555 5566664433 22 3667998888864333332 32 3334443
Q ss_pred ceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 530 ADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
...--..|.+.. -..|+-+|++|++.+++
T Consensus 156 ~~~~nptG~~~~---l~~i~~l~~~~~~~li~ 184 (398)
T 2rfv_A 156 ETPANPTLSLVD---IETVAGIAHQQGALLVV 184 (398)
T ss_dssp ESSBTTTTBCCC---HHHHHHHHHHTTCEEEE
T ss_pred ECCCCCCCcccC---HHHHHHHHHHcCCEEEE
Confidence 222222354543 45677789999998776
No 216
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*
Probab=36.44 E-value=1.6e+02 Score=29.29 Aligned_cols=102 Identities=14% Similarity=0.125 Sum_probs=53.5
Q ss_pred cCCC-EEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEech----------HHHHHhh
Q 006577 453 RDGD-VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN----------AISYIIH 521 (640)
Q Consensus 453 ~dgd-vILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds----------Av~~iM~ 521 (640)
.... +++|.|-+..+..++..+.+.| -+|++.+ |.+.|... .+...|+.+..+... .+-..+.
T Consensus 85 ~~~~~v~~~~g~~~a~~~~~~~~~~~g--d~vl~~~--~~~~~~~~--~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~ 158 (389)
T 1gd9_A 85 DPKTEIMVLLGANQAFLMGLSAFLKDG--EEVLIPT--PAFVSYAP--AVILAGGKPVEVPTYEEDEFRLNVDELKKYVT 158 (389)
T ss_dssp CTTTSEEEESSTTHHHHHHHTTTCCTT--CEEEEEE--SCCTTHHH--HHHHHTCEEEEEECCGGGTTCCCHHHHHHHCC
T ss_pred CCCCeEEEcCChHHHHHHHHHHhCCCC--CEEEEcC--CCchhHHH--HHHHCCCEEEEeccCCccCCCCCHHHHHHhcC
Confidence 3446 8888888888777776554333 3555543 44555332 334467877776521 1222222
Q ss_pred -hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 522 -EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 522 -~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
++..|++ ...-...|.++..-=-..++-+|+.|++.+++
T Consensus 159 ~~~~~v~~-~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~ 198 (389)
T 1gd9_A 159 DKTRALII-NSPCNPTGAVLTKKDLEEIADFVVEHDLIVIS 198 (389)
T ss_dssp TTEEEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred cCceEEEE-ECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEE
Confidence 3333433 22111234443322233466688999998876
No 217
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=36.39 E-value=1.1e+02 Score=25.31 Aligned_cols=82 Identities=15% Similarity=0.109 Sum_probs=46.6
Q ss_pred CCeeEEEEcCCCCCchHHHHHHHHHhCCCceEE-Eech--HHHHHhh-hccEEEEcceeEecCCCeecccchHHHHHHHh
Q 006577 478 GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTY-THIN--AISYIIH-EVTRVFLGASSVLSNGTVCSRVGTACVAMVAY 553 (640)
Q Consensus 478 Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTl-I~Ds--Av~~iM~-~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk 553 (640)
....+|+|+|..+.. ...+...|...|+.+.. ..+. ++.++-. ..|.||+..+- .+| .-|.-.+..+-+
T Consensus 7 ~~~~~iLivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~~--~~~----~~g~~~~~~l~~ 79 (140)
T 3cg0_A 7 DDLPGVLIVEDGRLA-AATLRIQLESLGYDVLGVFDNGEEAVRCAPDLRPDIALVDIML--CGA----LDGVETAARLAA 79 (140)
T ss_dssp -CCCEEEEECCBHHH-HHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHCCSEEEEESSC--CSS----SCHHHHHHHHHH
T ss_pred CCCceEEEEECCHHH-HHHHHHHHHHCCCeeEEEECCHHHHHHHHHhCCCCEEEEecCC--CCC----CCHHHHHHHHHh
Confidence 345788888877643 23345667777888875 4432 2222222 57888887542 111 123333334433
Q ss_pred hCCCcEEEecccc
Q 006577 554 GFHIPVLVCCEAY 566 (640)
Q Consensus 554 ~~~VPVyV~aety 566 (640)
..++|+++++...
T Consensus 80 ~~~~~ii~ls~~~ 92 (140)
T 3cg0_A 80 GCNLPIIFITSSQ 92 (140)
T ss_dssp HSCCCEEEEECCC
T ss_pred CCCCCEEEEecCC
Confidence 4789999987653
No 218
>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*
Probab=36.20 E-value=3e+02 Score=27.26 Aligned_cols=100 Identities=12% Similarity=0.075 Sum_probs=49.6
Q ss_pred CEEEeecCcHHHHHHHH--HHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEec----h------HHHHHhh--
Q 006577 456 DVLLTYGSSSAVEMILQ--HAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI----N------AISYIIH-- 521 (640)
Q Consensus 456 dvILT~g~SstV~~vL~--~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D----s------Av~~iM~-- 521 (640)
.+++|.|.+..+..+++ ...+.|. +|++. .|.+.+.. ..+...|..+..+.- + .+-..+.
T Consensus 97 ~i~~t~g~~~a~~~~~~~~~~~~~gd--~vl~~--~p~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~ 170 (397)
T 3fsl_A 97 ATIQTLGGSGALKVGADFLKRYFPES--GVWVS--DPTWENHV--AIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTL 170 (397)
T ss_dssp EEEEESHHHHHHHHHHHHHHHHCTTC--CEEEE--SSCCHHHH--HHHHHTTCCEEEECCEETTTTEECHHHHHHHHTTC
T ss_pred EEEEcCCcHHHHHHHHHHHHhcCCCC--eEEEe--CCCchhHH--HHHHHcCCceEEEeeeeccCCcCcHHHHHHHHHhC
Confidence 56777666666655532 2223332 34443 36665542 334456777766642 1 2333333
Q ss_pred -hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 522 -EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 522 -~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
.-.++++=..---..|.++..---..++-+|++|++.+++
T Consensus 171 ~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 211 (397)
T 3fsl_A 171 QAGSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFL 211 (397)
T ss_dssp CTTCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEE
Confidence 1223333222222334433333333677788888887776
No 219
>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1
Probab=36.16 E-value=1.4e+02 Score=30.19 Aligned_cols=102 Identities=15% Similarity=0.203 Sum_probs=51.5
Q ss_pred CCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEe-ch---------HHHHHhhhc
Q 006577 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-IN---------AISYIIHEV 523 (640)
Q Consensus 454 dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~-Ds---------Av~~iM~~V 523 (640)
...+++|.|.+..+..++..+.+.| -+|++.+ |.+.|... .+...|+.+..+. |. .+-..+..-
T Consensus 104 ~~~v~~~~g~~~al~~~~~~l~~~g--d~vl~~~--p~y~~~~~--~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~ 177 (416)
T 1bw0_A 104 KDNVVLCSGGSHGILMAITAICDAG--DYALVPQ--PGFPHYET--VCKAYGIGMHFYNCRPENDWEADLDEIRRLKDDK 177 (416)
T ss_dssp GGGEEEESHHHHHHHHHHHHHCCTT--CEEEEEE--SCCTHHHH--HHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCTT
T ss_pred cceEEEeCChHHHHHHHHHHhCCCC--CEEEEcC--CCcHhHHH--HHHHcCcEEEEeecCcccCCCCCHHHHHHHhccC
Confidence 3467777776666666666554333 3555553 45555432 3445687776654 21 122222211
Q ss_pred cEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 524 TRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 524 dkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
.++++=.+---..|.++..-=-..|+-+|+.|++.+++
T Consensus 178 ~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~ 215 (416)
T 1bw0_A 178 TKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFS 215 (416)
T ss_dssp EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCEEEE
Confidence 23222222111224433321134466678999998886
No 220
>3jvi_A Protein tyrosine phosphatase; niaid, ssgcid, seattle structural genomics center for infect disease, parasitic protozoan, dysentery; 1.80A {Entamoeba histolytica} PDB: 3js5_A* 3ily_A 3ido_A*
Probab=36.03 E-value=35 Score=31.73 Aligned_cols=68 Identities=13% Similarity=0.119 Sum_probs=46.1
Q ss_pred cCcHHHHHHHHHHHH-cCC--eeEEEEcCCCCCchH----HHHHHHHHhCCCceEEEechHHHHHhhhccEEEEc
Q 006577 462 GSSSAVEMILQHAHE-LGK--QFRVVIVDSRPKHEG----KLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLG 529 (640)
Q Consensus 462 g~SstV~~vL~~A~e-~Gk--~f~ViV~ESRP~~eG----~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvG 529 (640)
|+|..++.++++..+ .|. .|.|.-.-+.++..| .+....|.+.||+.....-.--...+...|.||.=
T Consensus 16 cRSpmAE~~~~~~~~~~gl~~~~~v~SAGt~~~~~G~~~~~~a~~~l~~~Gid~~~~ar~l~~~~~~~~DlIl~M 90 (161)
T 3jvi_A 16 CRSPAAEAVMKKVIQNHHLTEKYICDSAGTCSYHEGQQADSRMRKVGKSRGYQVDSISRPVVSSDFKNFDYIFAM 90 (161)
T ss_dssp SHHHHHHHHHHHHHHHTTCGGGEEEEEEESCCTTTTCBCCHHHHHHHHHTTCCCCCBCCBCCHHHHHHCSEEEES
T ss_pred hHHHHHHHHHHHHHHHcCCCCcEEEEeeecCCcccCCCCCHHHHHHHHHcCcCCCCeeeECCHHHhcCCCEEEEe
Confidence 567889999988654 443 688988888997666 34458899999987432222122345578888654
No 221
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=35.68 E-value=1.4e+02 Score=24.52 Aligned_cols=56 Identities=11% Similarity=-0.022 Sum_probs=37.0
Q ss_pred CCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCC-CCchHHHHHHHHHhC----CCceEEEech
Q 006577 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSR-PKHEGKLLLRRLVRK----GLSCTYTHIN 514 (640)
Q Consensus 454 dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESR-P~~eG~~La~eL~~~----GI~vTlI~Ds 514 (640)
.|-.|.+..+...+...+. + ..+.++++|.. |...|..+++.|.+. ++++.+++..
T Consensus 26 ~~~~v~~~~~~~~a~~~l~---~--~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~ 86 (133)
T 3nhm_A 26 GEFDCTTAADGASGLQQAL---A--HPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFVSGY 86 (133)
T ss_dssp TTSEEEEESSHHHHHHHHH---H--SCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEEESC
T ss_pred CCcEEEEECCHHHHHHHHh---c--CCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEEeCC
Confidence 4555666555444443332 2 35778888754 778999999999885 5777777754
No 222
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=35.16 E-value=1.4e+02 Score=24.51 Aligned_cols=79 Identities=15% Similarity=0.141 Sum_probs=43.9
Q ss_pred eeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHH-Hhh--hccEEEEcceeEecCCCeecccchHHHHHHHh-hC
Q 006577 480 QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISY-IIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAY-GF 555 (640)
Q Consensus 480 ~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~-iM~--~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk-~~ 555 (640)
..+|.++|..+.. ...+...|.+.|..+....+..-+. .+. ..|.||+..+---.| |.-.+..+-+ ..
T Consensus 7 ~~~ilivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~-------g~~~~~~l~~~~~ 78 (130)
T 3eod_A 7 GKQILIVEDEQVF-RSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMN-------GLKLLEHIRNRGD 78 (130)
T ss_dssp TCEEEEECSCHHH-HHHHHHHHHHTTCEEEEESCHHHHHHHHTTCCCSEEEECCC------------CHHHHHHHHHTTC
T ss_pred CCeEEEEeCCHHH-HHHHHHHHHhCCceEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCC-------HHHHHHHHHhcCC
Confidence 4577777766643 2334566777788777655443222 222 578888876532222 3333333333 34
Q ss_pred CCcEEEecccc
Q 006577 556 HIPVLVCCEAY 566 (640)
Q Consensus 556 ~VPVyV~aety 566 (640)
++|+++++...
T Consensus 79 ~~~ii~~t~~~ 89 (130)
T 3eod_A 79 QTPVLVISATE 89 (130)
T ss_dssp CCCEEEEECCC
T ss_pred CCCEEEEEcCC
Confidence 79999987654
No 223
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=35.10 E-value=1.7e+02 Score=23.58 Aligned_cols=78 Identities=17% Similarity=0.222 Sum_probs=43.1
Q ss_pred eEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHH-Hhh--hccEEEEcceeEecCCCeecccchHHHHHHHhhCCC
Q 006577 481 FRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISY-IIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHI 557 (640)
Q Consensus 481 f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~-iM~--~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~V 557 (640)
.+|+++|..+.. ...+...|...|+.+....+..-+. ++. ..|.||+..+ +.+. -|...+..+.+...+
T Consensus 3 ~~ilivdd~~~~-~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~d~~--l~~~-----~g~~~~~~l~~~~~~ 74 (122)
T 1zgz_A 3 HHIVIVEDEPVT-QARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDIN--LPDE-----NGLMLTRALRERSTV 74 (122)
T ss_dssp CEEEEECSSHHH-HHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESC--CSSS-----CHHHHHHHHHTTCCC
T ss_pred cEEEEEECCHHH-HHHHHHHHHHCCCeEEEecCHHHHHHHHhcCCCCEEEEeCC--CCCC-----ChHHHHHHHHhcCCC
Confidence 357777766643 2334456666787776555432221 222 4788887543 3332 243344444445679
Q ss_pred cEEEecccc
Q 006577 558 PVLVCCEAY 566 (640)
Q Consensus 558 PVyV~aety 566 (640)
|+++++...
T Consensus 75 ~ii~~s~~~ 83 (122)
T 1zgz_A 75 GIILVTGRS 83 (122)
T ss_dssp EEEEEESSC
T ss_pred CEEEEECCC
Confidence 999886553
No 224
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=35.07 E-value=2.4e+02 Score=27.87 Aligned_cols=70 Identities=10% Similarity=0.096 Sum_probs=39.7
Q ss_pred HcCCeeEEEEc-CCCCCchHHHHHHHHHhCCCceEEE---echHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHH
Q 006577 476 ELGKQFRVVIV-DSRPKHEGKLLLRRLVRKGLSCTYT---HINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMV 551 (640)
Q Consensus 476 e~Gk~f~ViV~-ESRP~~eG~~La~eL~~~GI~vTlI---~DsAv~~iM~~VdkVlvGADaIlaNG~VvNKiGT~~lAla 551 (640)
++..++++++. ...+ +-+...+++....-++.++ ...-+..+|..+|.+++.. |+. .+=
T Consensus 226 ~~~~~~~lv~~~g~~~--~~~~~l~~~~~~~~~v~~~g~~g~~~~~~~~~~ad~~v~~S-------------~g~--~lE 288 (376)
T 1v4v_A 226 EAFPHLTFVYPVHLNP--VVREAVFPVLKGVRNFVLLDPLEYGSMAALMRASLLLVTDS-------------GGL--QEE 288 (376)
T ss_dssp HHCTTSEEEEECCSCH--HHHHHHHHHHTTCTTEEEECCCCHHHHHHHHHTEEEEEESC-------------HHH--HHH
T ss_pred hhCCCeEEEEECCCCH--HHHHHHHHHhccCCCEEEECCCCHHHHHHHHHhCcEEEECC-------------cCH--HHH
Confidence 33445777664 3222 1123333443221256665 3346778899999987642 333 345
Q ss_pred HhhCCCcEEEe
Q 006577 552 AYGFHIPVLVC 562 (640)
Q Consensus 552 Ak~~~VPVyV~ 562 (640)
|-.+|+|+++.
T Consensus 289 A~a~G~PvI~~ 299 (376)
T 1v4v_A 289 GAALGVPVVVL 299 (376)
T ss_dssp HHHTTCCEEEC
T ss_pred HHHcCCCEEec
Confidence 66789999985
No 225
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=34.88 E-value=1.8e+02 Score=25.46 Aligned_cols=98 Identities=11% Similarity=0.167 Sum_probs=52.9
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEe--chH-HHHH-hhhccEEEEcce
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH--INA-ISYI-IHEVTRVFLGAS 531 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~--DsA-v~~i-M~~VdkVlvGAD 531 (640)
..|+..|+...-..+.+.+.+.| +.|+++|.+|... .+...++...|+.+.+-. |.. +... +.++|.||+..+
T Consensus 4 ~~vlI~G~G~vG~~la~~L~~~g--~~V~vid~~~~~~-~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~ 80 (153)
T 1id1_A 4 DHFIVCGHSILAINTILQLNQRG--QNVTVISNLPEDD-IKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSD 80 (153)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTT--CCEEEEECCCHHH-HHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSS
T ss_pred CcEEEECCCHHHHHHHHHHHHCC--CCEEEEECCChHH-HHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEEecC
Confidence 45777788766666667776666 5677777654211 111223334576654421 111 2222 567888877653
Q ss_pred eEecCCCeecccchHHHHHHHhhC-C-CcEEEeccc
Q 006577 532 SVLSNGTVCSRVGTACVAMVAYGF-H-IPVLVCCEA 565 (640)
Q Consensus 532 aIlaNG~VvNKiGT~~lAlaAk~~-~-VPVyV~aet 565 (640)
. .--...+++.|+.. + ..+++.+..
T Consensus 81 ~---------d~~n~~~~~~a~~~~~~~~ii~~~~~ 107 (153)
T 1id1_A 81 N---------DADNAFVVLSAKDMSSDVKTVLAVSD 107 (153)
T ss_dssp C---------HHHHHHHHHHHHHHTSSSCEEEECSS
T ss_pred C---------hHHHHHHHHHHHHHCCCCEEEEEECC
Confidence 2 12235667778775 4 445554433
No 226
>1uwk_A Urocanate hydratase; hydrolase, urocanase, imidazolonepropionate, histidine metabolism, lyase; HET: NAD URO; 1.19A {Pseudomonas putida} SCOP: e.51.1.1 PDB: 1w1u_A* 1uwl_A* 2v7g_A*
Probab=34.42 E-value=1.1e+02 Score=34.14 Aligned_cols=115 Identities=15% Similarity=0.259 Sum_probs=80.4
Q ss_pred chHHHHHHHHHHHHHHHhcCCcccc-HHHHHHHHHHHHHhc--------------------CCCCCHHHHHHHHHHHHHH
Q 006577 373 LSRDLTAKISSYVSFLIDCRPLSVS-MGNAIRFLKSQIAKI--------------------PISLSESEAKATLHSDIER 431 (640)
Q Consensus 373 ~srdL~~~L~~~i~~L~~aRPtsvs-m~NAIr~lk~~I~~l--------------------~~~~~~~eaK~~L~e~Id~ 431 (640)
...+|.+.|..+-+...+-+|.|++ ++|+.+-+-+.++.. +...+.+|+.+...++-+.
T Consensus 215 ~~~~ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~~~i~~DlvtDQTSaHdp~~GY~P~g~t~ee~~~l~~~dp~~ 294 (557)
T 1uwk_A 215 QATDLDDALVRIAKYTAEGKAISIALHGNAAEILPELVKRGVRPDMVTDQTSAHDPLNGYLPAGWTWEQYRDRAQTEPAA 294 (557)
T ss_dssp ECSSHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHHTCCCSEECCCSCTTCTTTSCCCTTCCHHHHHHHHHHCHHH
T ss_pred EcCCHHHHHHHHHHHHHcCCceEEEEeccHHHHHHHHHHCCCCCCCCCCCccccCcccccCCCCCCHHHHHHHHHhCHHH
Confidence 3456777777777788889999986 789988666655541 1234688999888888888
Q ss_pred HHHHHHHHHHHHHHHHHH---HhccCCCEEEeecCcHH-----------------HHHHHHHHHHcCCe-eEEEEcCCCC
Q 006577 432 FINEKIILADRVIVKHAV---TKIRDGDVLLTYGSSSA-----------------VEMILQHAHELGKQ-FRVVIVDSRP 490 (640)
Q Consensus 432 fi~E~i~~A~~~Ia~~a~---~~I~dgdvILT~g~Sst-----------------V~~vL~~A~e~Gk~-f~ViV~ESRP 490 (640)
|.+. +.+.|.+|.. ++-..|..+.=|||+-. |..+|+-.+..|+. ||=+|+-..|
T Consensus 295 ~~~~----~~~Sm~rhv~Am~~~~~~G~~~fDYGN~~r~~a~~aG~~~aF~~P~fV~~~irPlF~~G~GPFRWvalSGdp 370 (557)
T 1uwk_A 295 VVKA----AKQSMAVHVQAMLDFQKQGVPTFDYGNNIRQMAKEEGVADAFDFPGFVPAYIRPLFCRGVGPFRWAALSGEA 370 (557)
T ss_dssp HHHH----HHHHHHHHHHHHHHHHHTTCCBCBCSSCHHHHHHHTTCTTGGGSCBHHHHTTHHHHTTTCBCEEEEETTCCH
T ss_pred HHHH----HHHHHHHHHHHHHHHHHCCCeeeeccHHHHHHHHhCChhhcCCCCccHHHHhhhHhhcCCCCceeEEcCCCH
Confidence 8643 5666666553 44456788888888732 56666666767764 8888887777
Q ss_pred C
Q 006577 491 K 491 (640)
Q Consensus 491 ~ 491 (640)
.
T Consensus 371 e 371 (557)
T 1uwk_A 371 E 371 (557)
T ss_dssp H
T ss_pred H
Confidence 4
No 227
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=34.28 E-value=1.1e+02 Score=30.54 Aligned_cols=100 Identities=14% Similarity=0.149 Sum_probs=52.8
Q ss_pred CCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEec--------------hHHHHHh
Q 006577 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--------------NAISYII 520 (640)
Q Consensus 455 gdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D--------------sAv~~iM 520 (640)
..+++|-|.+..+..++..+...| -+|++. .|.+.+.. ..+...|..+..+.- ..+-..+
T Consensus 103 ~~i~~~~g~~~a~~~~~~~l~~~g--d~vl~~--~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l 176 (407)
T 3nra_A 103 DGLIITPGTQGALFLAVAATVARG--DKVAIV--QPDYFANR--KLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAF 176 (407)
T ss_dssp TSEEEESHHHHHHHHHHHTTCCTT--CEEEEE--ESCCTHHH--HHHHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHH
T ss_pred CcEEEeCCcHHHHHHHHHHhCCCC--CEEEEc--CCcccchH--HHHHHcCCEEEEeecccccccCcCCCcCHHHHHHHH
Confidence 466777666666665555443333 345553 35555533 334456777666542 2233333
Q ss_pred h-hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 521 H-EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 521 ~-~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
. +...|++ ...-...|.++..----.|+-+|+.|++.+++
T Consensus 177 ~~~~~~v~~-~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~ 217 (407)
T 3nra_A 177 KAGARVFLF-SNPNNPAGVVYSAEEIGQIAALAARYGATVIA 217 (407)
T ss_dssp HTTCCEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred hhCCcEEEE-cCCCCCCCcccCHHHHHHHHHHHHHcCCEEEE
Confidence 3 4555544 22222335555433345567788999998876
No 228
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=33.93 E-value=59 Score=32.76 Aligned_cols=90 Identities=11% Similarity=0.058 Sum_probs=56.2
Q ss_pred CCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHH-----hhhccEEEEc
Q 006577 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYI-----IHEVTRVFLG 529 (640)
Q Consensus 455 gdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~i-----M~~VdkVlvG 529 (640)
...|+..|+...-..+.+.+.++| . |+++|..|.. .. |.+.|+++.+- |..-... +.++|.|++.
T Consensus 115 ~~~viI~G~G~~g~~l~~~L~~~g--~-v~vid~~~~~-----~~-~~~~~~~~i~g-d~~~~~~L~~a~i~~a~~vi~~ 184 (336)
T 1lnq_A 115 SRHVVICGWSESTLECLRELRGSE--V-FVLAEDENVR-----KK-VLRSGANFVHG-DPTRVSDLEKANVRGARAVIVD 184 (336)
T ss_dssp -CEEEEESCCHHHHHHHTTGGGSC--E-EEEESCGGGH-----HH-HHHTTCEEEES-CTTSHHHHHHTCSTTEEEEEEC
T ss_pred cCCEEEECCcHHHHHHHHHHHhCC--c-EEEEeCChhh-----hh-HHhCCcEEEEe-CCCCHHHHHhcChhhccEEEEc
Confidence 457888898877677777776655 4 8888877642 33 55677765443 3332222 3467777765
Q ss_pred ceeEecCCCeecccchHHHHHHHhhCCCcEEEec
Q 006577 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (640)
Q Consensus 530 ADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~a 563 (640)
.+ +..-+..+++.||+++....+++
T Consensus 185 ~~---------~d~~n~~~~~~ar~~~~~~~iia 209 (336)
T 1lnq_A 185 LE---------SDSETIHCILGIRKIDESVRIIA 209 (336)
T ss_dssp CS---------SHHHHHHHHHHHHTTCTTSEEEE
T ss_pred CC---------ccHHHHHHHHHHHHHCCCCeEEE
Confidence 42 23456778899999987544333
No 229
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*
Probab=33.93 E-value=1.8e+02 Score=29.44 Aligned_cols=99 Identities=16% Similarity=0.228 Sum_probs=53.2
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEech------------------HHH
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN------------------AIS 517 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds------------------Av~ 517 (640)
.+++|.|.+..+..+++.+...| -+|++.+ |.+.|... .+...|+.+..+... .+-
T Consensus 103 ~v~~~~g~~~a~~~~~~~~~~~g--d~Vl~~~--p~y~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~ 176 (429)
T 1yiz_A 103 EVLVTVGAYEALYATIQGHVDEG--DEVIIIE--PFFDCYEP--MVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELE 176 (429)
T ss_dssp SEEEESHHHHHHHHHHHHHCCTT--CEEEEEE--SCCTTHHH--HHHHTTCEEEEEECBCCCSSSSEEGGGCBCCHHHHH
T ss_pred CEEEecChHHHHHHHHHHhcCCC--CEEEEcC--CCchhHHH--HHHHcCCEEEEEeCCcccccccccccCcccCHHHHH
Confidence 67777777777777776654434 3555554 66665433 334568777766521 122
Q ss_pred HHhh-hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 518 YIIH-EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 518 ~iM~-~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
..+. ++..|++- .---..|.++.+-=--.|+-+|+.|++.+++
T Consensus 177 ~~l~~~~~~v~~~-~p~nptG~~~~~~~l~~i~~~~~~~~~~li~ 220 (429)
T 1yiz_A 177 ALFNEKTKMIIIN-TPHNPLGKVMDRAELEVVANLCKKWNVLCVS 220 (429)
T ss_dssp HHCCTTEEEEEEE-SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHhccCceEEEEC-CCCCCCCccCCHHHHHHHHHHHHHcCcEEEE
Confidence 2222 34445442 2222234444322233466688999997776
No 230
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=33.85 E-value=2.3e+02 Score=28.78 Aligned_cols=92 Identities=15% Similarity=0.138 Sum_probs=54.5
Q ss_pred CCEEEeecCcH---HHHHHHHHHHHc---CCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEe-chHHHHHhhhccEEE
Q 006577 455 GDVLLTYGSSS---AVEMILQHAHEL---GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-INAISYIIHEVTRVF 527 (640)
Q Consensus 455 gdvILT~g~Ss---tV~~vL~~A~e~---Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~-DsAv~~iM~~VdkVl 527 (640)
..+||+++-|. .+...+.++.+. ..++.|++.-.+... ..+...+.+.++++.+.. ..-+..+|..+|.||
T Consensus 180 ~~~ilv~gGs~g~~~~~~~~~~al~~l~~~~~~~vi~~~G~~~~--~~~~~~~~~~~~~~~v~~f~~dm~~~l~~aDlvI 257 (365)
T 3s2u_A 180 RVNLLVLGGSLGAEPLNKLLPEALAQVPLEIRPAIRHQAGRQHA--EITAERYRTVAVEADVAPFISDMAAAYAWADLVI 257 (365)
T ss_dssp CCEEEECCTTTTCSHHHHHHHHHHHTSCTTTCCEEEEECCTTTH--HHHHHHHHHTTCCCEEESCCSCHHHHHHHCSEEE
T ss_pred CcEEEEECCcCCccccchhhHHHHHhcccccceEEEEecCcccc--ccccceecccccccccccchhhhhhhhccceEEE
Confidence 35788887652 345555555442 234566655443332 344567778888887754 234677889999886
Q ss_pred EcceeEecCCCeecccchHHHHHHHhhCCCcEEEe
Q 006577 528 LGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (640)
Q Consensus 528 vGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~ 562 (640)
. +.|...++= +-.+|+|++++
T Consensus 258 ~-------------raG~~Tv~E-~~a~G~P~Ili 278 (365)
T 3s2u_A 258 C-------------RAGALTVSE-LTAAGLPAFLV 278 (365)
T ss_dssp E-------------CCCHHHHHH-HHHHTCCEEEC
T ss_pred e-------------cCCcchHHH-HHHhCCCeEEe
Confidence 3 334433332 33479999875
No 231
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=33.81 E-value=1.8e+02 Score=23.23 Aligned_cols=78 Identities=17% Similarity=0.187 Sum_probs=43.1
Q ss_pred eEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHH--Hhh-hccEEEEcceeEecCCCeecccchHHHHHHHhhCCC
Q 006577 481 FRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISY--IIH-EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHI 557 (640)
Q Consensus 481 f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~--iM~-~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~V 557 (640)
++|+++|..+.. ...+...|...|+.+....+..-+. +.. ..|.||+..+ +.+. -|--.+..+.+...+
T Consensus 2 ~~ilivdd~~~~-~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~D~~--l~~~-----~g~~~~~~l~~~~~~ 73 (121)
T 1zh2_A 2 TNVLIVEDEQAI-RRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLG--LPDG-----DGIEFIRDLRQWSAV 73 (121)
T ss_dssp CEEEEECSCHHH-HHHHHHHHHTTTCEEEEESSHHHHHHHHHHHCCSEEEEESE--ETTE-----EHHHHHHHHHTTCCC
T ss_pred cEEEEEeCCHHH-HHHHHHHHhcCCCEEEEeCCHHHHHHHHhcCCCCEEEEeCC--CCCC-----cHHHHHHHHHhCCCC
Confidence 356777766543 2234466667787776555433222 212 5788888543 3321 243334444455679
Q ss_pred cEEEecccc
Q 006577 558 PVLVCCEAY 566 (640)
Q Consensus 558 PVyV~aety 566 (640)
|+++++...
T Consensus 74 ~ii~~s~~~ 82 (121)
T 1zh2_A 74 PVIVLSARS 82 (121)
T ss_dssp CEEEEESCC
T ss_pred cEEEEECCC
Confidence 999886543
No 232
>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*
Probab=33.65 E-value=91 Score=30.34 Aligned_cols=92 Identities=13% Similarity=0.144 Sum_probs=50.9
Q ss_pred CEEEeecCcHHHHHHH-HHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhh--hccEEEEccee
Q 006577 456 DVLLTYGSSSAVEMIL-QHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIH--EVTRVFLGASS 532 (640)
Q Consensus 456 dvILT~g~SstV~~vL-~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~--~VdkVlvGADa 532 (640)
.+||..|-++.+-.-| +.+.++| .+|+++..+.. .+ +.....+..++. ++|.||--|-.
T Consensus 4 ~~ilVtGatG~iG~~l~~~L~~~g--~~v~~~~r~~~--------------~D--~~d~~~~~~~~~~~~~d~vih~a~~ 65 (321)
T 1e6u_A 4 QRVFIAGHRGMVGSAIRRQLEQRG--DVELVLRTRDE--------------LN--LLDSRAVHDFFASERIDQVYLAAAK 65 (321)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTCT--TEEEECCCTTT--------------CC--TTCHHHHHHHHHHHCCSEEEECCCC
T ss_pred CEEEEECCCcHHHHHHHHHHHhCC--CeEEEEecCcc--------------CC--ccCHHHHHHHHHhcCCCEEEEcCee
Confidence 4677778777664433 4444444 46666654421 01 111234445566 67777765532
Q ss_pred Eec------CC---CeecccchHHHHHHHhhCCCcEEEeccc
Q 006577 533 VLS------NG---TVCSRVGTACVAMVAYGFHIPVLVCCEA 565 (640)
Q Consensus 533 Ila------NG---~VvNKiGT~~lAlaAk~~~VPVyV~aet 565 (640)
... +- .-+|-.||..+.-+|+.+++.-+|.+.+
T Consensus 66 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS 107 (321)
T 1e6u_A 66 VGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGS 107 (321)
T ss_dssp CCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred cCCcchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 210 00 0136689999999999999865655444
No 233
>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}
Probab=33.50 E-value=67 Score=31.25 Aligned_cols=85 Identities=15% Similarity=0.054 Sum_probs=42.5
Q ss_pred EEEeecCcHHHHHH-HHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEcce-eEe
Q 006577 457 VLLTYGSSSAVEMI-LQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGAS-SVL 534 (640)
Q Consensus 457 vILT~g~SstV~~v-L~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGAD-aIl 534 (640)
.||..|-|+.|=.- .+.+.++| .+|+++--+|... .+..|......+..+|.|+=-|- .|.
T Consensus 2 kILVTGatGfIG~~L~~~L~~~G--~~V~~l~R~~~~~---------------~~~~~~~~~~~l~~~d~vihla~~~i~ 64 (298)
T 4b4o_A 2 RVLVGGGTGFIGTALTQLLNARG--HEVTLVSRKPGPG---------------RITWDELAASGLPSCDAAVNLAGENIL 64 (298)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT--CEEEEEESSCCTT---------------EEEHHHHHHHCCCSCSEEEECCCCCSS
T ss_pred EEEEECCCCHHHHHHHHHHHHCC--CEEEEEECCCCcC---------------eeecchhhHhhccCCCEEEEeccCccc
Confidence 46777777665443 34444555 3444443233211 11223334445667888874321 121
Q ss_pred cCCC-----------eecccchHHHHHHHhhCCCc
Q 006577 535 SNGT-----------VCSRVGTACVAMVAYGFHIP 558 (640)
Q Consensus 535 aNG~-----------VvNKiGT~~lAlaAk~~~VP 558 (640)
.... -.|--||..++-+++..+++
T Consensus 65 ~~~~~~~~~~~~~~~~~~v~~t~~l~~~~~~~~~~ 99 (298)
T 4b4o_A 65 NPLRRWNETFQKEVLGSRLETTQLLAKAITKAPQP 99 (298)
T ss_dssp CTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred chhhhhhhhhhhhhhhHHHHHHHHHHHHHHHhCCC
Confidence 1100 12556888888888777655
No 234
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}
Probab=33.43 E-value=2.7e+02 Score=28.30 Aligned_cols=114 Identities=9% Similarity=-0.081 Sum_probs=62.6
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCCeeEEE-EcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEcc----
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGKQFRVV-IVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA---- 530 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk~f~Vi-V~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGA---- 530 (640)
..|..+|....-...+....+....++|+ |++..+.. ...++. +.||.+....|-.-..--.++|.|++..
T Consensus 24 ~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~-~~~~a~---~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~~ 99 (357)
T 3ec7_A 24 LKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGR-AQAALD---KYAIEAKDYNDYHDLINDKDVEVVIITASNEA 99 (357)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTH-HHHHHH---HHTCCCEEESSHHHHHHCTTCCEEEECSCGGG
T ss_pred eeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHH-HHHHHH---HhCCCCeeeCCHHHHhcCCCCCEEEEcCCcHH
Confidence 36888888765555555544344567765 66665542 222222 2366566555533322233688888853
Q ss_pred -------------eeEecCCCeecccchHHHHHHHhhCCCcEEEeccccccccccc
Q 006577 531 -------------SSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQ 573 (640)
Q Consensus 531 -------------DaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~aetyKf~~~~~ 573 (640)
+.++.-=-..+--....+.-+|+..++.++.++-.+.|++.+.
T Consensus 100 h~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~~~v~~~~R~~p~~~ 155 (357)
T 3ec7_A 100 HADVAVAALNANKYVFCEKPLAVTAADCQRVIEAEQKNGKRMVQIGFMRRYDKGYV 155 (357)
T ss_dssp HHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHHTSCCEEEECGGGGSHHHH
T ss_pred HHHHHHHHHHCCCCEEeecCccCCHHHHHHHHHHHHHhCCeEEEEeecccCCHHHH
Confidence 3333332233344445566677788888755556666766543
No 235
>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*
Probab=33.37 E-value=4.4e+02 Score=27.53 Aligned_cols=103 Identities=18% Similarity=0.217 Sum_probs=67.2
Q ss_pred CCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcC------CCCCch--------H----HHHHHHHHhC--CCceEEEec-
Q 006577 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVD------SRPKHE--------G----KLLLRRLVRK--GLSCTYTHI- 513 (640)
Q Consensus 455 gdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~E------SRP~~e--------G----~~La~eL~~~--GI~vTlI~D- 513 (640)
+..||..|..++--.++..+...|.. ++.++| |....| | ..++..|.+. ++.++.+..
T Consensus 34 ~~~VlIvGaGGlGs~va~~La~aGVg-~ItlvD~D~Ve~SNL~RQ~l~~~~diG~~Ka~aaa~~L~~inP~v~v~~~~~~ 112 (340)
T 3rui_A 34 NTKVLLLGAGTLGCYVSRALIAWGVR-KITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGVKLS 112 (340)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCC-EEEEECCCBCCTTSTTTSTTCCGGGTTSBHHHHHHHHHHHHCTTCEEEEECCC
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCC-EEEEecCCEeccccccccccCChhhcChHHHHHHHHHHHHhCCCCEEEEEecc
Confidence 57899999998877777777777854 333333 222222 2 2344667665 466665542
Q ss_pred ------------------hHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEeccccccc
Q 006577 514 ------------------NAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFH 569 (640)
Q Consensus 514 ------------------sAv~~iM~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~aetyKf~ 569 (640)
..+..++.++|.||.+.|... --+.+.-+|..+++|++-.+ +.|.
T Consensus 113 i~~~g~~~~~~~~~~~~~~~l~~~l~~~DlVvd~tDn~~---------tR~lin~~c~~~~~plI~aa--~G~~ 175 (340)
T 3rui_A 113 IPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDSRE---------SRWLPSLLSNIENKTVINAA--LGFD 175 (340)
T ss_dssp CCCTTSCCSCHHHHHHHHHHHHHHHHHCSEEEECCSSTG---------GGHHHHHHHHHTTCEEEEEE--ECSS
T ss_pred ccccCcccchhhhhcCCHHHHHhhhccCCEEEecCCCHH---------HHHHHHHHHHHcCCcEEEee--ecce
Confidence 124567789999998887543 23788889999999999754 4453
No 236
>3la8_A SMU.1229, putative purine nucleoside phosphorylase; PUNA, glycosyltransferase, transferase; 1.80A {Streptococcus mutans} PDB: 3lba_A*
Probab=33.31 E-value=1e+02 Score=31.95 Aligned_cols=76 Identities=21% Similarity=0.204 Sum_probs=49.4
Q ss_pred EeecCcHHHHHHHHHH-HHcCCee--EEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEcceeEec
Q 006577 459 LTYGSSSAVEMILQHA-HELGKQF--RVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLS 535 (640)
Q Consensus 459 LT~g~SstV~~vL~~A-~e~Gk~f--~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGADaIla 535 (640)
|++.|+..+...++++ .+.|..+ =||++-+-|.++-..=.+.| +. +|||+|=.
T Consensus 188 m~~~yd~~Lr~~a~~aA~~~gi~~~~Gvy~~~~GP~FeT~AE~r~~-------------------r~-----~GadaVgM 243 (303)
T 3la8_A 188 MSNAYTADYREVAHQVADKIGIKLDEGVYIGVSGPSYETPAEIRAF-------------------KT-----LGADAVGM 243 (303)
T ss_dssp CTTSSCHHHHHHHHHHHHHHTCCCEEEEEEECCCSSCCCHHHHHHH-------------------HH-----TTCSEEES
T ss_pred CCcccCHHHHHHHHHHHHHcCCceEEEEEEEeeCCccCCHHHHHHH-------------------HH-----cCCCEEec
Confidence 4556666666655554 4456554 37888888988744312222 21 27777765
Q ss_pred CCCeecccchHHHHHHHhhCCCcEEEecccc
Q 006577 536 NGTVCSRVGTACVAMVAYGFHIPVLVCCEAY 566 (640)
Q Consensus 536 NG~VvNKiGT~~lAlaAk~~~VPVyV~aety 566 (640)
. |...|++|+++++||.+++--.
T Consensus 244 s--------t~pEa~vAre~gi~~~~Is~IT 266 (303)
T 3la8_A 244 S--------TVPEVIVAVHSGLKVLGISAIT 266 (303)
T ss_dssp S--------SHHHHHHHHHTTCEEEEEEEEE
T ss_pred c--------HHHHHHHHHHcCCCEEEEEEEe
Confidence 5 4789999999999999876543
No 237
>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A
Probab=33.19 E-value=3.7e+02 Score=26.67 Aligned_cols=102 Identities=16% Similarity=0.127 Sum_probs=51.8
Q ss_pred CCEEEeecCcHHHHHHHHHHHH-------cCCeeEEEEcCCCCCchHHHH-HHHHHh----------CCCceEEEechHH
Q 006577 455 GDVLLTYGSSSAVEMILQHAHE-------LGKQFRVVIVDSRPKHEGKLL-LRRLVR----------KGLSCTYTHINAI 516 (640)
Q Consensus 455 gdvILT~g~SstV~~vL~~A~e-------~Gk~f~ViV~ESRP~~eG~~L-a~eL~~----------~GI~vTlI~DsAv 516 (640)
..+++|-|-+..+..+|+.+.. .|+. +|++.+ |.+.|..+ +..+.. .+.++..+.-.-+
T Consensus 97 ~~v~~~~gg~~a~~~al~~~~~~~~~~~~~g~~-~vi~~~--~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 173 (406)
T 4adb_A 97 DRVFFCNSGAEANEAALKLARKFAHDRYGSHKS-GIVAFK--NAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAYNDI 173 (406)
T ss_dssp SEEEEESSHHHHHHHHHHHHHHHHHHHTCTTCC-EEEEET--TCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECTTCH
T ss_pred CeEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEC--CCcCCCcHHHhhccCCccccccCCCCCCCceEeCCCcH
Confidence 3567776666666666665543 3433 455443 22323222 122221 1234444432223
Q ss_pred HHH---hh-hccEEEEcceeEecCCCee--cccchHHHHHHHhhCCCcEEE
Q 006577 517 SYI---IH-EVTRVFLGASSVLSNGTVC--SRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 517 ~~i---M~-~VdkVlvGADaIlaNG~Vv--NKiGT~~lAlaAk~~~VPVyV 561 (640)
..+ +. ++..|++- -+...|+++ ..-=--.|+-+|+.|++.+++
T Consensus 174 ~~l~~~l~~~~~~v~~~--p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~ 222 (406)
T 4adb_A 174 NSASALIDDSTCAVIVE--PIQGEGGVVPASNAFLQGLRELCNRHNALLIF 222 (406)
T ss_dssp HHHHTTCSTTEEEEEEC--SEETTTTSEECCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHhcCCeEEEEEe--CCcCCCCCccCCHHHHHHHHHHHHHcCCEEEE
Confidence 222 22 34444444 356666665 444445677789999998886
No 238
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=33.03 E-value=81 Score=26.89 Aligned_cols=79 Identities=14% Similarity=0.177 Sum_probs=40.5
Q ss_pred CeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHH-Hhh--hccEEEEcceeEecCCCeecccchHHHHHHHh--
Q 006577 479 KQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISY-IIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAY-- 553 (640)
Q Consensus 479 k~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~-iM~--~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk-- 553 (640)
+.++|+|+|..+.. ...+...|.+.|+.|....+..-+. .+. ..|.||+..+ +.++ -|.-.+..+-+
T Consensus 13 ~~~~iLivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~--mp~~-----~g~~~~~~lr~~~ 84 (143)
T 3m6m_D 13 RSMRMLVADDHEAN-RMVLQRLLEKAGHKVLCVNGAEQVLDAMAEEDYDAVIVDLH--MPGM-----NGLDMLKQLRVMQ 84 (143)
T ss_dssp --CEEEEECSSHHH-HHHHHHHHHC--CEEEEESSHHHHHHHHHHSCCSEEEEESC--CSSS-----CHHHHHHHHHHHH
T ss_pred ccceEEEEeCCHHH-HHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCCCCEEEEeCC--CCCC-----CHHHHHHHHHhch
Confidence 45678888776653 2234466667787776655432221 222 5788887543 3332 23333333321
Q ss_pred ---hCCCcEEEeccc
Q 006577 554 ---GFHIPVLVCCEA 565 (640)
Q Consensus 554 ---~~~VPVyV~aet 565 (640)
...+|+++++..
T Consensus 85 ~~~~~~~pii~~s~~ 99 (143)
T 3m6m_D 85 ASGMRYTPVVVLSAD 99 (143)
T ss_dssp HTTCCCCCEEEEESC
T ss_pred hccCCCCeEEEEeCC
Confidence 235899998654
No 239
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Probab=32.84 E-value=1.3e+02 Score=30.24 Aligned_cols=102 Identities=16% Similarity=0.169 Sum_probs=53.1
Q ss_pred CCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEec-------hHHHHHhh--hcc
Q 006577 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI-------NAISYIIH--EVT 524 (640)
Q Consensus 454 dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D-------sAv~~iM~--~Vd 524 (640)
...+++|.|.+..+..+++.+.+.| -+|++. .|.+.|... .+...|.++..+.. ..+-..+. ++.
T Consensus 91 ~~~v~~~~g~~~al~~~~~~~~~~g--d~Vl~~--~p~y~~~~~--~~~~~g~~~~~~~~~~~~~d~~~l~~~l~~~~~~ 164 (397)
T 2zyj_A 91 PEEVLITTGSQQALDLVGKVFLDEG--SPVLLE--APSYMGAIQ--AFRLQGPRFLTVPAGEEGPDLDALEEVLKRERPR 164 (397)
T ss_dssp GGGEEEESHHHHHHHHHHHHHCCTT--CEEEEE--ESCCHHHHH--HHHTTCCEEEEEEEETTEECHHHHHHHHHHCCCS
T ss_pred hhhEEEeccHHHHHHHHHHHhCCCC--CEEEEe--CCCcHHHHH--HHHHcCCEEEecCcCCCCCCHHHHHHHHhhcCCe
Confidence 3467777666666666666554334 345553 366666443 33446877766542 12333333 344
Q ss_pred EEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 525 RVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 525 kVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
.|++=...-...|.++..-=-..++-+|++|++.+++
T Consensus 165 ~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~ 201 (397)
T 2zyj_A 165 FLYLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVE 201 (397)
T ss_dssp CEEECCBSCTTTCCBCCHHHHHHHHHHHHHHTCCEEE
T ss_pred EEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence 4433222222234443321122567788999998876
No 240
>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2
Probab=32.81 E-value=49 Score=32.55 Aligned_cols=104 Identities=15% Similarity=0.154 Sum_probs=59.2
Q ss_pred EEEeecCcHHHHH-HHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCC-CceEEEec----hHHHHHhhh--ccEEEE
Q 006577 457 VLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKG-LSCTYTHI----NAISYIIHE--VTRVFL 528 (640)
Q Consensus 457 vILT~g~SstV~~-vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~G-I~vTlI~D----sAv~~iM~~--VdkVlv 528 (640)
+||..|-++.+-. +++.+.++| .+|++++-............|...+ +.+. ..| .++..++.. +|.||-
T Consensus 3 ~vlVTGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~-~~Dl~d~~~~~~~~~~~~~d~vih 79 (347)
T 1orr_A 3 KLLITGGCGFLGSNLASFALSQG--IDLIVFDNLSRKGATDNLHWLSSLGNFEFV-HGDIRNKNDVTRLITKYMPDSCFH 79 (347)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT--CEEEEEECCCSTTHHHHHHHHHTTCCCEEE-ECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred EEEEeCCCchhHHHHHHHHHhCC--CEEEEEeCCCccCchhhhhhhccCCceEEE-EcCCCCHHHHHHHHhccCCCEEEE
Confidence 5788888776644 445555555 5677775322111223345555544 3322 223 345667777 898887
Q ss_pred cceeEecC-----C---CeecccchHHHHHHHhhCCCc--EEEec
Q 006577 529 GASSVLSN-----G---TVCSRVGTACVAMVAYGFHIP--VLVCC 563 (640)
Q Consensus 529 GADaIlaN-----G---~VvNKiGT~~lAlaAk~~~VP--VyV~a 563 (640)
-|-....+ - --+|-.||..+.-+|+.+++. |+.++
T Consensus 80 ~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~iv~~S 124 (347)
T 1orr_A 80 LAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSS 124 (347)
T ss_dssp CCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred CCcccChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEec
Confidence 66432110 0 024678999999999988885 44443
No 241
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=32.78 E-value=61 Score=32.63 Aligned_cols=98 Identities=10% Similarity=0.092 Sum_probs=59.2
Q ss_pred CCEEEeecCc------HHHHHHHHHHHHcCCeeEEEEcCCCCCchH----HHHHHHHHhCCCce--------E----EEe
Q 006577 455 GDVLLTYGSS------SAVEMILQHAHELGKQFRVVIVDSRPKHEG----KLLLRRLVRKGLSC--------T----YTH 512 (640)
Q Consensus 455 gdvILT~g~S------stV~~vL~~A~e~Gk~f~ViV~ESRP~~eG----~~La~eL~~~GI~v--------T----lI~ 512 (640)
..+|+..|+- ..+..++....+++.+++++++-..+..++ ..+.+.+.+.|++- . ++.
T Consensus 184 ~~~il~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~ivG~g~~~~~~~l~~~~~~~~~~~~l~~~v~~l~~vv~~~g~~~ 263 (413)
T 3oy2_A 184 DVLFLNMNRNTARKRLDIYVLAAARFISKYPDAKVRFLCNSHHESKFDLHSIALRELVASGVDNVFTHLNKIMINRTVLT 263 (413)
T ss_dssp SEEEECCSCSSGGGTHHHHHHHHHHHHHHCTTCCEEEEEECCTTCSCCHHHHHHHHHHHHTCSCHHHHHTTEEEECSCCC
T ss_pred ceEEEEcCCCchhcCcHHHHHHHHHHHHhCCCcEEEEEeCCcccchhhHHHHHHHHHHHcCcccccccccceeeccCcCC
Confidence 4467777763 124445555555666777776654444332 33334555577762 2 244
Q ss_pred chHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEe
Q 006577 513 INAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (640)
Q Consensus 513 DsAv~~iM~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~ 562 (640)
+..+..+|..+|.+++-.. . . |.-...+=|-.+|+||++.
T Consensus 264 ~~~~~~~~~~adv~v~pS~--~-E-------~~~~~~lEAma~G~PvI~s 303 (413)
T 3oy2_A 264 DERVDMMYNACDVIVNCSS--G-E-------GFGLCSAEGAVLGKPLIIS 303 (413)
T ss_dssp HHHHHHHHHHCSEEEECCS--C-C-------SSCHHHHHHHTTTCCEEEE
T ss_pred HHHHHHHHHhCCEEEeCCC--c-C-------CCCcHHHHHHHcCCCEEEc
Confidence 5689999999999988542 1 1 2223455677789999983
No 242
>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A
Probab=32.76 E-value=1.5e+02 Score=30.18 Aligned_cols=99 Identities=5% Similarity=-0.088 Sum_probs=58.6
Q ss_pred CEEEeecCcHHHHH-HHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEE--Eec-hHHHHHhhhccEEEEcce
Q 006577 456 DVLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTY--THI-NAISYIIHEVTRVFLGAS 531 (640)
Q Consensus 456 dvILT~g~SstV~~-vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTl--I~D-sAv~~iM~~VdkVlvGAD 531 (640)
.+|+..|-++.|-. ++..+.++|.-.+|+++|-.+. +| .+..|.+...+..+ +.+ ......++.+|.||+-|-
T Consensus 9 mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~-~~--~~~dL~~~~~~~~v~~~~~t~d~~~al~gaDvVi~~ag 85 (326)
T 1smk_A 9 FKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNA-PG--VTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAG 85 (326)
T ss_dssp EEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSH-HH--HHHHHHTSCSSCEEEEEESHHHHHHHHTTCSEEEECCC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCc-Hh--HHHHhhcccccceEEEEeCCCCHHHHcCCCCEEEEcCC
Confidence 46888885433322 2333445565467887876654 44 34567665544333 222 345567899999999987
Q ss_pred eEecCCC------eecccchHHHHHHHhhCCC
Q 006577 532 SVLSNGT------VCSRVGTACVAMVAYGFHI 557 (640)
Q Consensus 532 aIlaNG~------VvNKiGT~~lAlaAk~~~V 557 (640)
.-...|. -.|--++..++-.+..++.
T Consensus 86 ~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~~p 117 (326)
T 1smk_A 86 VPRKPGMTRDDLFKINAGIVKTLCEGIAKCCP 117 (326)
T ss_dssp CCCCSSCCCSHHHHHHHHHHHHHHHHHHHHCT
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 5444442 2455677778777766653
No 243
>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*
Probab=32.74 E-value=3.8e+02 Score=29.53 Aligned_cols=108 Identities=16% Similarity=0.171 Sum_probs=69.3
Q ss_pred HHHHHHHhccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCC--------------chH----HHHHHHHHhC-
Q 006577 444 IVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPK--------------HEG----KLLLRRLVRK- 504 (640)
Q Consensus 444 Ia~~a~~~I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~--------------~eG----~~La~eL~~~- 504 (640)
++..+.+.|. +..||..|..++=-.++......|.. ++.++|.... .-| ..++..|.+.
T Consensus 22 ~G~~~q~~L~-~~~VlvvG~GGlGseiak~La~aGVg-~itlvD~D~Ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~lN 99 (531)
T 1tt5_A 22 WGDHGQEALE-SAHVCLINATATGTEILKNLVLPGIG-SFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELN 99 (531)
T ss_dssp HHHHHHHHHH-HCEEEEECCSHHHHHHHHHHHTTTCS-EEEEECCCBBCHHHHHHCTTCCGGGBTSBHHHHHHHHHHTTC
T ss_pred cCHHHHHHHh-cCeEEEECcCHHHHHHHHHHHHcCCC-eEEEEeCCEechhhcccCccCChhhcCcHHHHHHHHHHHHhC
Confidence 5666777776 46888899988766777777777864 4555553321 112 2334677776
Q ss_pred -CCceEEEechHHH------HHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEe
Q 006577 505 -GLSCTYTHINAIS------YIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (640)
Q Consensus 505 -GI~vTlI~DsAv~------~iM~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~ 562 (640)
+++++.+...--. .++...|.||.+.|.+- --+.+.-.|..++||++.+
T Consensus 100 p~v~v~~~~~~~~~~~~~~~~~~~~~DvVi~~~d~~~---------~r~~ln~~c~~~~iplI~~ 155 (531)
T 1tt5_A 100 SDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPES---------TSLRLADVLWNSQIPLLIC 155 (531)
T ss_dssp TTSBCCEESSCHHHHHHSCGGGGGGCSEEEEESCCHH---------HHHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEeCCCcchhhhhhHHHhcCCCEEEEeCCCHH---------HHHHHHHHHHHcCCCEEEE
Confidence 4777766643221 34568899988765432 3355666888999999875
No 244
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=32.69 E-value=68 Score=31.47 Aligned_cols=69 Identities=19% Similarity=0.114 Sum_probs=41.8
Q ss_pred EEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEe----------chHHHHHhh--hccE
Q 006577 458 LLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH----------INAISYIIH--EVTR 525 (640)
Q Consensus 458 ILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~----------DsAv~~iM~--~Vdk 525 (640)
||.-|+.+....+|.... .+..++|..+=|.|...+.+. -.++||++..+. |..+...++ ++|.
T Consensus 17 vl~SG~gsnl~all~~~~-~~~~~eI~~Vis~~~a~~~~~---A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dl 92 (215)
T 3da8_A 17 VLASGTGSLLRSLLDAAV-GDYPARVVAVGVDRECRAAEI---AAEASVPVFTVRLADHPSRDAWDVAITAATAAHEPDL 92 (215)
T ss_dssp EEESSCCHHHHHHHHHSS-TTCSEEEEEEEESSCCHHHHH---HHHTTCCEEECCGGGSSSHHHHHHHHHHHHHTTCCSE
T ss_pred EEEeCChHHHHHHHHHHh-ccCCCeEEEEEeCCchHHHHH---HHHcCCCEEEeCcccccchhhhhHHHHHHHHhhCCCE
Confidence 444477777776665543 234456665556555544333 345799999885 334555555 5888
Q ss_pred EEEcc
Q 006577 526 VFLGA 530 (640)
Q Consensus 526 VlvGA 530 (640)
+++.+
T Consensus 93 ivlag 97 (215)
T 3da8_A 93 VVSAG 97 (215)
T ss_dssp EEEEE
T ss_pred EEEcC
Confidence 87755
No 245
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=32.61 E-value=27 Score=35.28 Aligned_cols=81 Identities=10% Similarity=0.043 Sum_probs=53.9
Q ss_pred EEEEcCCCCCchHHH-HHHHHHhCCCceEEEechHHH---HHhhhccEEEEcceeEecCCCeecccchHHHHHHHhh--C
Q 006577 482 RVVIVDSRPKHEGKL-LLRRLVRKGLSCTYTHINAIS---YIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYG--F 555 (640)
Q Consensus 482 ~ViV~ESRP~~eG~~-La~eL~~~GI~vTlI~DsAv~---~iM~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~--~ 555 (640)
+|.+++...+-+|.. |...|.+.|++|+++....+. ..+.+.|.||++ | +.. +.+.-.++..+.+. .
T Consensus 6 ~vLiV~g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~~~~~~~L~~yDvIIl~-d-~~~-----~~l~~~~~~~L~~yV~~ 78 (259)
T 3rht_A 6 RVLYCGDTSLETAAGYLAGLMTSWQWEFDYIPSHVGLDVGELLAKQDLVILS-D-YPA-----ERMTAQAIDQLVTMVKA 78 (259)
T ss_dssp CEEEEESSCTTTTHHHHHHHHHHTTCCCEEECTTSCBCSSHHHHTCSEEEEE-S-CCG-----GGBCHHHHHHHHHHHHT
T ss_pred eEEEECCCCchhHHHHHHHHHHhCCceEEEecccccccChhHHhcCCEEEEc-C-Ccc-----ccCCHHHHHHHHHHHHh
Confidence 677777776666665 457899999999999987763 567899999986 3 111 23344444444432 4
Q ss_pred CCcEEEeccccccc
Q 006577 556 HIPVLVCCEAYKFH 569 (640)
Q Consensus 556 ~VPVyV~aetyKf~ 569 (640)
|-=++++.+...|.
T Consensus 79 GGgLi~~gG~~s~~ 92 (259)
T 3rht_A 79 GCGLVMLGGWESYH 92 (259)
T ss_dssp TCEEEEECSTTSSS
T ss_pred CCeEEEecCccccc
Confidence 77788886654443
No 246
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=32.36 E-value=1.2e+02 Score=29.88 Aligned_cols=71 Identities=24% Similarity=0.228 Sum_probs=40.2
Q ss_pred EEeecCcHHHHHHHHHHHHcCCeeEEEEc-CCCCCchHHHHHHHHHhCCCceEEEec----------hHHHHHhh--hcc
Q 006577 458 LLTYGSSSAVEMILQHAHELGKQFRVVIV-DSRPKHEGKLLLRRLVRKGLSCTYTHI----------NAISYIIH--EVT 524 (640)
Q Consensus 458 ILT~g~SstV~~vL~~A~e~Gk~f~ViV~-ESRP~~eG~~La~eL~~~GI~vTlI~D----------sAv~~iM~--~Vd 524 (640)
||..|..+....+|....+....++|.++ -.+|...|.+. ..+.||++.++.. ..+...++ ++|
T Consensus 27 ~l~SG~g~~~~~~l~~l~~~~~~~~I~~Vvt~~~~~~~~~~---A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~~D 103 (229)
T 3auf_A 27 VLISGSGTNLQAILDGCREGRIPGRVAVVISDRADAYGLER---ARRAGVDALHMDPAAYPSRTAFDAALAERLQAYGVD 103 (229)
T ss_dssp EEESSCCHHHHHHHHHHHTTSSSEEEEEEEESSTTCHHHHH---HHHTTCEEEECCGGGSSSHHHHHHHHHHHHHHTTCS
T ss_pred EEEeCCcHHHHHHHHHHHhCCCCCeEEEEEcCCCchHHHHH---HHHcCCCEEEECcccccchhhccHHHHHHHHhcCCC
Confidence 33347777777777666543223444322 23465555443 3567999987652 33444444 678
Q ss_pred EEEEcce
Q 006577 525 RVFLGAS 531 (640)
Q Consensus 525 kVlvGAD 531 (640)
.+|+.+-
T Consensus 104 liv~agy 110 (229)
T 3auf_A 104 LVCLAGY 110 (229)
T ss_dssp EEEESSC
T ss_pred EEEEcCh
Confidence 8877543
No 247
>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A
Probab=32.33 E-value=62 Score=37.61 Aligned_cols=84 Identities=15% Similarity=0.112 Sum_probs=50.9
Q ss_pred HHHHHHHHHhccC---CCEEEeecCcHHHH--HHHHHHHHcC---------CeeEEEEcCCCCCchHHHHHHHHHhCC--
Q 006577 442 RVIVKHAVTKIRD---GDVLLTYGSSSAVE--MILQHAHELG---------KQFRVVIVDSRPKHEGKLLLRRLVRKG-- 505 (640)
Q Consensus 442 ~~Ia~~a~~~I~d---gdvILT~g~SstV~--~vL~~A~e~G---------k~f~ViV~ESRP~~eG~~La~eL~~~G-- 505 (640)
++|.++..+++.+ +.+||..|..+-++ .+|+.+...| ...+||.+|..|.-.- .++.....|
T Consensus 394 ~AI~~al~d~~~~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~--~l~~~~~Ng~~ 471 (745)
T 3ua3_A 394 EAVVGALKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIV--TLKYMNVRTWK 471 (745)
T ss_dssp HHHHHHHHHHHTTCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHH--HHHHHHHHTTT
T ss_pred HHHHHHHHHhhcccCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHH--HHHHHHhcCCC
Confidence 3455554556543 35899998875443 4566665455 6789999999885432 223332333
Q ss_pred CceEEEechHHHHHh-------hhccEEE
Q 006577 506 LSCTYTHINAISYII-------HEVTRVF 527 (640)
Q Consensus 506 I~vTlI~DsAv~~iM-------~~VdkVl 527 (640)
=.|++|.-.+=-+-+ .+||.+|
T Consensus 472 d~VtVI~gd~eev~lp~~~~~~ekVDIIV 500 (745)
T 3ua3_A 472 RRVTIIESDMRSLPGIAKDRGFEQPDIIV 500 (745)
T ss_dssp TCSEEEESCGGGHHHHHHHTTCCCCSEEE
T ss_pred CeEEEEeCchhhcccccccCCCCcccEEE
Confidence 358888855544444 4788876
No 248
>2fkn_A Urocanate hydratase; rossman fold, lyase; HET: NAD; 2.20A {Bacillus subtilis}
Probab=32.23 E-value=1.1e+02 Score=34.09 Aligned_cols=115 Identities=21% Similarity=0.327 Sum_probs=80.6
Q ss_pred chHHHHHHHHHHHHHHHhcCCcccc-HHHHHHHHHHHHHhc--------------------CCCCCHHHHHHHHHHHHHH
Q 006577 373 LSRDLTAKISSYVSFLIDCRPLSVS-MGNAIRFLKSQIAKI--------------------PISLSESEAKATLHSDIER 431 (640)
Q Consensus 373 ~srdL~~~L~~~i~~L~~aRPtsvs-m~NAIr~lk~~I~~l--------------------~~~~~~~eaK~~L~e~Id~ 431 (640)
...+|.+.|..+-+...+-+|.|++ ++|+.+-+-+.++.. +...+.+|+.+...++-+.
T Consensus 211 ~~~~ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~~~i~~DlvtDQTSaHdp~~GY~P~g~t~ee~~~l~~~dp~~ 290 (552)
T 2fkn_A 211 KTASIEEALAWAEEAKLAGKPLSIALLGNAAEVHHTLLNRGVKIDIVTDQTSAHDPLIGYVPEGYSLDEADRLRQDTPEL 290 (552)
T ss_dssp EESCHHHHHHHHHHHHHTTCCEEEEEESCHHHHHHHHHTTTCCCSEECCCSCTTCTTTTCCCTTCCHHHHHHHHHHCHHH
T ss_pred EcCCHHHHHHHHHHHHHcCCceEEEEeccHHHHHHHHHHCCCCCCCCCCCccccCcccccCCCCCCHHHHHHHHHhCHHH
Confidence 3456777777777778889999987 899988776666541 1224688999888888888
Q ss_pred HHHHHHHHHHHHHHHHHH---HhccCCCEEEeecCcHH-----------------HHHHHHHHHHcCC-eeEEEEcCCCC
Q 006577 432 FINEKIILADRVIVKHAV---TKIRDGDVLLTYGSSSA-----------------VEMILQHAHELGK-QFRVVIVDSRP 490 (640)
Q Consensus 432 fi~E~i~~A~~~Ia~~a~---~~I~dgdvILT~g~Sst-----------------V~~vL~~A~e~Gk-~f~ViV~ESRP 490 (640)
|.+ .+.+.|.+|.. ++-..|..+.=|||+-. |..+|+-.+..|+ .||=+|+-..|
T Consensus 291 ~~~----~~~~Sm~rhv~am~~~~~~G~~~fDYGN~~r~~a~~aG~~~aF~~P~fV~~~irPlF~~G~GPFRWvalSGdp 366 (552)
T 2fkn_A 291 YVR----LAKQSMKKHVEAMLAFQQKGSIVFDYGNNIRQVAKDEGLENAFDFPGFVPAYIRPLFCEGKGPFRWAALSGDP 366 (552)
T ss_dssp HHH----HHHHHHHHHHHHHHHHHHHTCEECBCSSCHHHHHHHTTCTTGGGSCBHHHHTTHHHHTTTCCCEEEEETTCCH
T ss_pred HHH----HHHHHHHHHHHHHHHHHHCCCeeeeccHHHHHHHHhCChhhcCCCCccHHHHhhhHhhcCCCCceeEEcCCCH
Confidence 864 35666666653 34456888888888732 5566666666675 48888887777
Q ss_pred C
Q 006577 491 K 491 (640)
Q Consensus 491 ~ 491 (640)
.
T Consensus 367 e 367 (552)
T 2fkn_A 367 A 367 (552)
T ss_dssp H
T ss_pred H
Confidence 4
No 249
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=32.21 E-value=1.9e+02 Score=23.93 Aligned_cols=82 Identities=7% Similarity=-0.058 Sum_probs=48.4
Q ss_pred cCCeeEEEEcCCCCCchHHHHHHHHHhCCC--ceEEEechHH--HHHh------hhccEEEEcceeEecCCCeecccchH
Q 006577 477 LGKQFRVVIVDSRPKHEGKLLLRRLVRKGL--SCTYTHINAI--SYII------HEVTRVFLGASSVLSNGTVCSRVGTA 546 (640)
Q Consensus 477 ~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI--~vTlI~DsAv--~~iM------~~VdkVlvGADaIlaNG~VvNKiGT~ 546 (640)
..+..+|+|+|..+.. ...+...|...|. .|....+..- .++- ...|.||+..+ +.++ -|--
T Consensus 6 ~~~~~~iLivdd~~~~-~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~--l~~~-----~g~~ 77 (146)
T 3ilh_A 6 TRKIDSVLLIDDDDIV-NFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGRWPSIICIDIN--MPGI-----NGWE 77 (146)
T ss_dssp -CCEEEEEEECSCHHH-HHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHTSSCCCSEEEEESS--CSSS-----CHHH
T ss_pred cCccceEEEEeCCHHH-HHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhhccCCCCCEEEEcCC--CCCC-----CHHH
Confidence 3567888988887653 2344577777887 6665554332 2222 24899988653 3332 2333
Q ss_pred HHHHHHh-----hCCCcEEEecccc
Q 006577 547 CVAMVAY-----GFHIPVLVCCEAY 566 (640)
Q Consensus 547 ~lAlaAk-----~~~VPVyV~aety 566 (640)
.+..+-+ ...+|+++++...
T Consensus 78 ~~~~l~~~~~~~~~~~~ii~~t~~~ 102 (146)
T 3ilh_A 78 LIDLFKQHFQPMKNKSIVCLLSSSL 102 (146)
T ss_dssp HHHHHHHHCGGGTTTCEEEEECSSC
T ss_pred HHHHHHHhhhhccCCCeEEEEeCCC
Confidence 4444444 4689999987654
No 250
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*
Probab=32.03 E-value=2.2e+02 Score=28.52 Aligned_cols=102 Identities=11% Similarity=0.051 Sum_probs=48.8
Q ss_pred CCCEEE--eecCcHHHHHHHHHHH---HcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEech----------HHHH
Q 006577 454 DGDVLL--TYGSSSAVEMILQHAH---ELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN----------AISY 518 (640)
Q Consensus 454 dgdvIL--T~g~SstV~~vL~~A~---e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds----------Av~~ 518 (640)
...+++ |.|-+..+..++..+. +.| -+|++.+ |.+.+..- .+...|..+..+... .+-.
T Consensus 94 ~~~i~~v~t~G~~~al~~~~~~l~~~~~~g--d~Vlv~~--p~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~d~~~l~~ 167 (401)
T 7aat_A 94 SGRYVTVQGISGTGSLRVGANFLQRFFKFS--RDVYLPK--PSWGNHTP--IFRDAGLQLQAYRYYDPKTCSLDFTGAME 167 (401)
T ss_dssp TTCEEEEEEEHHHHHHHHHHHHHHHHCTTC--CEEEEEE--SCCTTHHH--HHHHTTCEEEEEECEETTTTEECHHHHHH
T ss_pred cCceEEEecCcchHHHHHHHHHHHHhccCC--CEEEEcC--CCchhHHH--HHHHcCCeeEeeeeeccccCccCHHHHHH
Confidence 445555 7777666655444332 333 3555543 66655432 334567777766521 1111
Q ss_pred Hhhhc---cEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 519 IIHEV---TRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 519 iM~~V---dkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
.+.++ .++++=+..=-..|.++..-=-..++-+|+.|++.+++
T Consensus 168 ~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~ 213 (401)
T 7aat_A 168 DISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYF 213 (401)
T ss_dssp HHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHhCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEE
Confidence 23221 22222111111223333322234677789999987776
No 251
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=32.00 E-value=1.7e+02 Score=29.56 Aligned_cols=68 Identities=15% Similarity=0.124 Sum_probs=41.3
Q ss_pred CEEEeecCcHHHHH-HHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHh-hhccEEEEcc
Q 006577 456 DVLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYII-HEVTRVFLGA 530 (640)
Q Consensus 456 dvILT~g~SstV~~-vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM-~~VdkVlvGA 530 (640)
..|+.+|-.++=.. +-+.++++| ++|.+.|.++..+ +..+|.+.||++.+-.+. ..+. ..+|.||++.
T Consensus 5 ~~i~~iGiGg~Gms~~A~~L~~~G--~~V~~~D~~~~~~---~~~~L~~~gi~v~~g~~~--~~l~~~~~d~vV~Sp 74 (326)
T 3eag_A 5 KHIHIIGIGGTFMGGLAAIAKEAG--FEVSGCDAKMYPP---MSTQLEALGIDVYEGFDA--AQLDEFKADVYVIGN 74 (326)
T ss_dssp CEEEEESCCSHHHHHHHHHHHHTT--CEEEEEESSCCTT---HHHHHHHTTCEEEESCCG--GGGGSCCCSEEEECT
T ss_pred cEEEEEEECHHHHHHHHHHHHhCC--CEEEEEcCCCCcH---HHHHHHhCCCEEECCCCH--HHcCCCCCCEEEECC
Confidence 45666665444332 223344444 7889999887643 456788899988764442 2333 3688887754
No 252
>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}
Probab=31.79 E-value=4e+02 Score=26.62 Aligned_cols=99 Identities=11% Similarity=0.059 Sum_probs=50.0
Q ss_pred EEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCC--ceEEEe-----------------chHHH
Q 006577 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGL--SCTYTH-----------------INAIS 517 (640)
Q Consensus 457 vILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI--~vTlI~-----------------DsAv~ 517 (640)
+++|-+-+..++.++. +...| -+|++.+ +.+-|..+...+...|+ .+.++. ...+-
T Consensus 54 v~~~~sgt~a~~~~~~-~~~~g--d~vi~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~d~~~l~ 128 (379)
T 3ke3_A 54 VIIPGSGTYGMEAVAR-QLTID--EDCLIIR--NGWFSYRWTQILEKGKFAKSSTVLTAERTEDTEAPKPFAPVDIETAV 128 (379)
T ss_dssp EEEESCHHHHHHHHHH-HHCTT--CEEEEEE--CSHHHHHHHHHHHHHCCSSEEEEEECEESSCCSSCCCEECCCHHHHH
T ss_pred EEEcCChhHHHHHHHH-hCCCC--CeEEEEe--CCchhHHHHHHHHHhCCCCceEEEeccccccccccCCCCCCCHHHHH
Confidence 4444444455555553 33333 3677665 44556555555555565 444442 12344
Q ss_pred HHhh--hccEEEEcceeEecCCCeecccc-hHHHHHHHhhCCCcEEEe
Q 006577 518 YIIH--EVTRVFLGASSVLSNGTVCSRVG-TACVAMVAYGFHIPVLVC 562 (640)
Q Consensus 518 ~iM~--~VdkVlvGADaIlaNG~VvNKiG-T~~lAlaAk~~~VPVyV~ 562 (640)
..+. +...|++- ..=...| ++...+ --.|+-+|+.|++.++|=
T Consensus 129 ~~i~~~~~~~v~~~-~~~~~~G-~~~~~~~l~~i~~~~~~~~~~li~D 174 (379)
T 3ke3_A 129 AKIKEDKSAIVYAP-HVETSSG-IILSEEYIKALSEAVHSVGGLLVID 174 (379)
T ss_dssp HHHHHHTCSEEEEE-SEETTTT-EECCHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHhhcCCcEEEEE-eecCCCc-eeCCHHHHHHHHHHHHHcCCEEEEE
Confidence 4443 45555441 1111234 444332 335677899999988873
No 253
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}
Probab=31.63 E-value=1.6e+02 Score=29.82 Aligned_cols=105 Identities=14% Similarity=0.187 Sum_probs=54.4
Q ss_pred cCCCEEEeecCcHHHH--HHHHHHHH--cCC-------eeEEEEcCCCCCchHHHHHHHHHhCCCceEEEec-------h
Q 006577 453 RDGDVLLTYGSSSAVE--MILQHAHE--LGK-------QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI-------N 514 (640)
Q Consensus 453 ~dgdvILT~g~SstV~--~vL~~A~e--~Gk-------~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D-------s 514 (640)
....+++|-|.+..+. .++..... .|. .-+|++. .|.+.+...+ +...|+.+..+.. .
T Consensus 86 ~~~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~gd~Vlv~--~p~y~~~~~~--~~~~g~~~~~v~~~~~g~d~~ 161 (423)
T 3ez1_A 86 KAENVLVWNNSSLELQGLVLTFALLHGVRGSTGPWLSQTPKMIVT--VPGYDRHFLL--LQTLGFELLTVDMQSDGPDVD 161 (423)
T ss_dssp CGGGEEECSSCHHHHHHHHHHHHHHTCCTTCSSCGGGGCCEEEEE--ESCCHHHHHH--HHHHTCEEEEEEEETTEECHH
T ss_pred ChhhEEEeCCcHHHHHHHHHHHHHhccCCCccccccCCCCEEEEc--CCCcHHHHHH--HHHcCCEEEeccCCCCCCCHH
Confidence 3346788887777765 44444443 331 2456654 3666665433 4445777666542 2
Q ss_pred HHHHHh---hhccEEEEcceeEecCCCeecccchHHHHHHH-hhCCCcEEE
Q 006577 515 AISYII---HEVTRVFLGASSVLSNGTVCSRVGTACVAMVA-YGFHIPVLV 561 (640)
Q Consensus 515 Av~~iM---~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaA-k~~~VPVyV 561 (640)
.+-..+ .++..|++-...=-..|.++..----.|+-+| ++|++.+++
T Consensus 162 ~l~~~l~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~ 212 (423)
T 3ez1_A 162 AVERLAGTDPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFA 212 (423)
T ss_dssp HHHHHHHSCTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEE
T ss_pred HHHHHHhhCCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEE
Confidence 344444 23444432221122234444443333566667 889987776
No 254
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=31.60 E-value=2.5e+02 Score=28.07 Aligned_cols=96 Identities=8% Similarity=-0.042 Sum_probs=51.6
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEec---hHHHHHhhh-----ccEEE
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI---NAISYIIHE-----VTRVF 527 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D---sAv~~iM~~-----VdkVl 527 (640)
++++|-|-+..+..++..+.+.| -.|++. .|.+.+...+ +...|..+..+.. ..+-..+.+ +..|+
T Consensus 105 ~v~~~~ggt~a~~~~~~~~~~~g--d~V~~~--~p~~~~~~~~--~~~~g~~~~~v~~~d~~~l~~~l~~~~~~~~~~v~ 178 (398)
T 3a2b_A 105 AAILFSTGFQSNLGPLSCLMGRN--DYILLD--ERDHASIIDG--SRLSFSKVIKYGHNNMEDLRAKLSRLPEDSAKLIC 178 (398)
T ss_dssp EEEEESSHHHHHHHHHHHSSCTT--CEEEEE--TTCCHHHHHH--HHHSSSEEEEECTTCHHHHHHHHHTSCSSSCEEEE
T ss_pred cEEEECCHHHHHHHHHHHHhCCC--CEEEEC--CccCHHHHHH--HHHcCCceEEeCCCCHHHHHHHHHhhccCCceEEE
Confidence 56777666666665555553333 344444 4555554333 4446877777652 233334433 33444
Q ss_pred EcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 528 LGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 528 vGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
+. ..-...|.+.. --.|+-+|++|++.+++
T Consensus 179 ~~-~~~nptG~~~~---~~~l~~~~~~~~~~li~ 208 (398)
T 3a2b_A 179 TD-GIFSMEGDIVN---LPELTSIANEFDAAVMV 208 (398)
T ss_dssp EE-SBCTTTCCBCC---HHHHHHHHHHHTCEEEE
T ss_pred Ee-CCCCCCCCccC---HHHHHHHHHHcCcEEEE
Confidence 32 22223355543 35677788999987776
No 255
>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}
Probab=31.54 E-value=2.4e+02 Score=26.26 Aligned_cols=75 Identities=13% Similarity=0.200 Sum_probs=46.4
Q ss_pred CCEEEeecCcHHHH-HHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEe-c----hHHHHHhh-------
Q 006577 455 GDVLLTYGSSSAVE-MILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-I----NAISYIIH------- 521 (640)
Q Consensus 455 gdvILT~g~SstV~-~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~-D----sAv~~iM~------- 521 (640)
|.+||..|-++-+- .+.+...++| .+|+++..|.......+..+|.+.|..+.++. | ..+..++.
T Consensus 5 ~~~vlItGasggiG~~~a~~l~~~G--~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (247)
T 2hq1_A 5 GKTAIVTGSSRGLGKAIAWKLGNMG--ANIVLNGSPASTSLDATAEEFKAAGINVVVAKGDVKNPEDVENMVKTAMDAFG 82 (247)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTT--CEEEEEECTTCSHHHHHHHHHHHTTCCEEEEESCTTSHHHHHHHHHHHHHHHS
T ss_pred CcEEEEECCCchHHHHHHHHHHHCC--CEEEEEcCcCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHhcC
Confidence 56777777776654 3445555555 57888866555455566677877777776553 3 23444444
Q ss_pred hccEEEEcce
Q 006577 522 EVTRVFLGAS 531 (640)
Q Consensus 522 ~VdkVlvGAD 531 (640)
.+|.||--|-
T Consensus 83 ~~d~vi~~Ag 92 (247)
T 2hq1_A 83 RIDILVNNAG 92 (247)
T ss_dssp CCCEEEECC-
T ss_pred CCCEEEECCC
Confidence 5788887663
No 256
>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2
Probab=31.54 E-value=76 Score=30.50 Aligned_cols=92 Identities=13% Similarity=0.154 Sum_probs=50.0
Q ss_pred CCEEEeecCcHHHHHHH-HHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhh--hccEEEEcce
Q 006577 455 GDVLLTYGSSSAVEMIL-QHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIH--EVTRVFLGAS 531 (640)
Q Consensus 455 gdvILT~g~SstV~~vL-~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~--~VdkVlvGAD 531 (640)
..+||..|-++.+-..| +.+.++| .+|+++.-+. +-+....++..++. ++|.||--|-
T Consensus 12 ~~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~-----------------~Dl~d~~~~~~~~~~~~~d~vih~A~ 72 (292)
T 1vl0_A 12 HMKILITGANGQLGREIQKQLKGKN--VEVIPTDVQD-----------------LDITNVLAVNKFFNEKKPNVVINCAA 72 (292)
T ss_dssp CEEEEEESTTSHHHHHHHHHHTTSS--EEEEEECTTT-----------------CCTTCHHHHHHHHHHHCCSEEEECCC
T ss_pred cceEEEECCCChHHHHHHHHHHhCC--CeEEeccCcc-----------------CCCCCHHHHHHHHHhcCCCEEEECCc
Confidence 35677777777664433 3444444 6777765331 01111223444555 5777765543
Q ss_pred eEecC--------CCeecccchHHHHHHHhhCCCcEEEeccc
Q 006577 532 SVLSN--------GTVCSRVGTACVAMVAYGFHIPVLVCCEA 565 (640)
Q Consensus 532 aIlaN--------G~VvNKiGT~~lAlaAk~~~VPVyV~aet 565 (640)
....+ -.-+|-.||..+.-+|+..++.|+.++..
T Consensus 73 ~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~iv~~SS~ 114 (292)
T 1vl0_A 73 HTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGAEIVQISTD 114 (292)
T ss_dssp CCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHTCEEEEEEEG
T ss_pred cCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCeEEEechH
Confidence 21100 01246788999998898888865555443
No 257
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*
Probab=31.50 E-value=1.2e+02 Score=29.86 Aligned_cols=84 Identities=13% Similarity=0.108 Sum_probs=50.4
Q ss_pred HHHHHHHHHHhccCCCEEEeecCcH-HHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHH-HHHHhCC--CceEEEechHH
Q 006577 441 DRVIVKHAVTKIRDGDVLLTYGSSS-AVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL-RRLVRKG--LSCTYTHINAI 516 (640)
Q Consensus 441 ~~~Ia~~a~~~I~dgdvILT~g~Ss-tV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La-~eL~~~G--I~vTlI~DsAv 516 (640)
.+.|+..+..++++|.+||=.|++. .....|.... .....+|+-+|-.|.. ...+ +.+.+.| .+|+++...+.
T Consensus 57 ~~~i~~l~~~~~~~~~~vLDlGcGtG~~~~~la~~~-~~~~~~v~gvD~s~~m--l~~A~~~~~~~~~~~~v~~~~~D~~ 133 (261)
T 4gek_A 57 ISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNI-HHDNCKIIAIDNSPAM--IERCRRHIDAYKAPTPVDVIEGDIR 133 (261)
T ss_dssp HHHHHHHHHHHCCTTCEEEEETCTTTHHHHHHHHTC-CSSSCEEEEEESCHHH--HHHHHHHHHTSCCSSCEEEEESCTT
T ss_pred HHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHhc-CCCCCEEEEEECCHHH--HHHHHHHHHhhccCceEEEeecccc
Confidence 4567777788899999999999874 3332232211 1245789988876542 2334 3455555 46888875543
Q ss_pred HHHhhhccEEE
Q 006577 517 SYIIHEVTRVF 527 (640)
Q Consensus 517 ~~iM~~VdkVl 527 (640)
..-....|.|+
T Consensus 134 ~~~~~~~d~v~ 144 (261)
T 4gek_A 134 DIAIENASMVV 144 (261)
T ss_dssp TCCCCSEEEEE
T ss_pred cccccccccce
Confidence 33333455444
No 258
>4eu9_A Succinyl-COA:acetate coenzyme A transferase; HET: COA; 1.48A {Acetobacter aceti} PDB: 4eua_A* 4eu3_A* 4eu4_A* 4eu5_A* 4eu6_A* 4eu7_A* 4eu8_A* 4eub_A* 4euc_A* 4eud_A*
Probab=31.49 E-value=1.2e+02 Score=33.38 Aligned_cols=96 Identities=20% Similarity=0.348 Sum_probs=57.4
Q ss_pred HHHHHhccCCCEEEeecCcH-----HHHHHH-HHH---HHcCCe--eEEEEcC-CCCCchHH----------------HH
Q 006577 446 KHAVTKIRDGDVLLTYGSSS-----AVEMIL-QHA---HELGKQ--FRVVIVD-SRPKHEGK----------------LL 497 (640)
Q Consensus 446 ~~a~~~I~dgdvILT~g~Ss-----tV~~vL-~~A---~e~Gk~--f~ViV~E-SRP~~eG~----------------~L 497 (640)
+.|+.+|++|++|...|+.+ .+...| +++ +..|.. +.++... ..|..++. ..
T Consensus 18 eEAv~~IkdGd~V~~~Gf~~~G~P~~L~~ALa~R~~~~~~~g~~~~i~l~~~~~~~~~~~~~l~~~g~i~~~~~~~~~~~ 97 (514)
T 4eu9_A 18 ETASELIKHGDVVGTSGFTGAGYPKEVPKALAQRMEAAHDRGEKYQISLITGASTGPQLDGELAKANGVYFRSPFNTDAT 97 (514)
T ss_dssp HHHHTTCCTTCEEEECCBTTBSCCCHHHHHHHHHHHHHHHTTCCCCEEEECSSCCCTTTHHHHHHTTCEEEEESCCCCHH
T ss_pred HHHHHhCCCCCEEEECCCCCCcCHHHHHHHHHHHHHHhhcCCcceeEEEEEecCcCcccccccccCCCEEEEEecCCCHH
Confidence 44678999999999987532 344444 322 234443 4444433 33444332 12
Q ss_pred HHHHHhCC-CceEEEechHHHHHhh-----hccEEEEcceeEecCCCeec
Q 006577 498 LRRLVRKG-LSCTYTHINAISYIIH-----EVTRVFLGASSVLSNGTVCS 541 (640)
Q Consensus 498 a~eL~~~G-I~vTlI~DsAv~~iM~-----~VdkVlvGADaIlaNG~VvN 541 (640)
.+++.+.| +...-+..+.++..+. .+|..|+-+..+-.+|.+.-
T Consensus 98 ~R~~i~~G~~~y~p~~ls~~~~~~~~~~~~~iDVAlI~as~~De~Gnis~ 147 (514)
T 4eu9_A 98 MRNRINAGETEYFDNHLGQVAGRAVQGNYGKFNIALVEATAITEDGGIVP 147 (514)
T ss_dssp HHHHHHTTSSEECCCCGGGHHHHHHHTTTCCCCEEEEEEEEECTTCCEEE
T ss_pred HHHHHHcCCeeEECccccchHHHHHhccCCCceEEEEEEEcCCCCceEEe
Confidence 35566666 3333344566664442 68999999999999999863
No 259
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=31.30 E-value=3.7e+02 Score=26.07 Aligned_cols=57 Identities=19% Similarity=0.176 Sum_probs=33.9
Q ss_pred CCCceEEEe--ch---HHHHHhhhccEEEEcceeEecCCCeec-ccchHHHHHHHhhCCCcEEEecc
Q 006577 504 KGLSCTYTH--IN---AISYIIHEVTRVFLGASSVLSNGTVCS-RVGTACVAMVAYGFHIPVLVCCE 564 (640)
Q Consensus 504 ~GI~vTlI~--Ds---Av~~iM~~VdkVlvGADaIlaNG~VvN-KiGT~~lAlaAk~~~VPVyV~ae 564 (640)
.|+++++.. .. .+-.+..++|++++|+..- |.+-. -.|+..-.++ ++-.+||+|+=+
T Consensus 244 ~~~~~~~~~~~g~~~~~I~~~a~~adliV~G~~~~---~~~~~~l~Gsv~~~vl-~~~~~pVlvv~~ 306 (309)
T 3cis_A 244 PNVAITRVVVRDQPARQLVQRSEEAQLVVVGSRGR---GGYAGMLVGSVGETVA-QLARTPVIVARE 306 (309)
T ss_dssp TTSCEEEEEESSCHHHHHHHHHTTCSEEEEESSCS---SCCTTCSSCHHHHHHH-HHCSSCEEEECC
T ss_pred CCCcEEEEEEcCCHHHHHHHhhCCCCEEEECCCCC---CCccccccCcHHHHHH-hcCCCCEEEeCC
Confidence 478776533 22 2333334899999999742 22222 2465554444 667899999743
No 260
>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A
Probab=31.23 E-value=1.7e+02 Score=29.42 Aligned_cols=72 Identities=11% Similarity=0.093 Sum_probs=44.0
Q ss_pred CCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhC--CCceEEEechHHHHHhhhccEEE
Q 006577 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRK--GLSCTYTHINAISYIIHEVTRVF 527 (640)
Q Consensus 454 dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~--GI~vTlI~DsAv~~iM~~VdkVl 527 (640)
.|.++|..|..+....++..+.+.|-. +|+|+ .|-......++.++... ++.+..+....+...+.++|.||
T Consensus 126 ~~k~vlVlGaGG~g~aia~~L~~~G~~-~v~i~-~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l~~~l~~~DiVI 199 (283)
T 3jyo_A 126 KLDSVVQVGAGGVGNAVAYALVTHGVQ-KLQVA-DLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVV 199 (283)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCS-EEEEE-CSSHHHHHHHHHHHHHHHTSCCEEEECSTTHHHHHHHSSEEE
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCC-EEEEE-ECCHHHHHHHHHHHHhhcCCceEEEcCHHHHHHHHhcCCEEE
Confidence 467888888877777777766666632 34444 34334455666777654 34555555445556666777665
No 261
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*
Probab=31.22 E-value=1.4e+02 Score=30.64 Aligned_cols=102 Identities=19% Similarity=0.247 Sum_probs=56.2
Q ss_pred cCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEech-------HHHHHhh----
Q 006577 453 RDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN-------AISYIIH---- 521 (640)
Q Consensus 453 ~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds-------Av~~iM~---- 521 (640)
...++++|.|.+..+..++..+.+.|. +|++. .|.+.+.. ..+...|+.+..+.-. -+..+.+
T Consensus 117 ~~~~v~~t~g~t~al~~~~~~l~~~gd--~vl~~--~p~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~ 190 (427)
T 3dyd_A 117 EAKDVILTSGCSQAIDLCLAVLANPGQ--NILVP--RPGFSLYK--TLAESMGIEVKLYNLLPEKSWEIDLKQLEYLIDE 190 (427)
T ss_dssp CGGGEEEESSHHHHHHHHHHHHCCTTC--EEEEE--ESCCTHHH--HHHHHTTCEEEEEEEEGGGTTEECHHHHHSSCCT
T ss_pred ChHHEEEecCcHHHHHHHHHHhcCCCC--EEEEc--CCCchhHH--HHHHHcCCEEEEEecccccCCCCCHHHHHHHhcc
Confidence 345678887777777776666644343 55554 46666643 3345568877765421 1222222
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 522 ~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
+...|++ ...--..|.++..----.|+-+|+.|++.+++
T Consensus 191 ~~~~v~i-~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~ 229 (427)
T 3dyd_A 191 KTACLIV-NNPSNPCGSVFSKRHLQKILAVAARQCVPILA 229 (427)
T ss_dssp TEEEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCEEEE-ECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 2223322 11112334444433345677789999999887
No 262
>3l5o_A Uncharacterized protein from DUF364 family; RARE metals, siderophores, adenosyl binding site; 2.01A {Desulfitobacterium hafniense}
Probab=31.12 E-value=88 Score=31.92 Aligned_cols=88 Identities=17% Similarity=0.187 Sum_probs=60.7
Q ss_pred CCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEcceeE
Q 006577 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSV 533 (640)
Q Consensus 454 dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGADaI 533 (640)
.|.+|..+|+-..+..++ + +...++|+|-+|.. |. .+|.+..++++++|.||+-+.++
T Consensus 140 ~g~kV~vIG~fP~i~~~~----~--~~~~l~V~E~~p~~------------g~----~p~~~~~~~lp~~D~viiTgstl 197 (270)
T 3l5o_A 140 KGKKVGVVGHFPHLESLL----E--PICDLSILEWSPEE------------GD----YPLPASEFILPECDYVYITCASV 197 (270)
T ss_dssp TTSEEEEESCCTTHHHHH----T--TTSEEEEEESSCCT------------TC----EEGGGHHHHGGGCSEEEEETHHH
T ss_pred CCCEEEEECCchhHHHHH----h--cCCCEEEEECCCCC------------CC----CChhHHHHhhccCCEEEEEeehh
Confidence 578999999976544433 2 34678888988852 22 58899999999999999987766
Q ss_pred ecCCCeecccchHHHHHHHhhCCCcEEEeccccccccc
Q 006577 534 LSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHER 571 (640)
Q Consensus 534 laNG~VvNKiGT~~lAlaAk~~~VPVyV~aetyKf~~~ 571 (640)
. || |+.-=|--......|+++.+|.-+.+.
T Consensus 198 v-N~-------Tl~~lL~~~~~a~~vvl~GPStp~~P~ 227 (270)
T 3l5o_A 198 V-DK-------TLPRLLELSRNARRITLVGPGTPLAPV 227 (270)
T ss_dssp H-HT-------CHHHHHHHTTTSSEEEEESTTCCCCGG
T ss_pred h-cC-------CHHHHHhhCCCCCEEEEECCCchhhHH
Confidence 5 33 333222222345678888999877764
No 263
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}
Probab=30.98 E-value=1.9e+02 Score=29.31 Aligned_cols=100 Identities=11% Similarity=0.099 Sum_probs=53.4
Q ss_pred CCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEech---------HHHHHh-hhcc
Q 006577 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN---------AISYII-HEVT 524 (640)
Q Consensus 455 gdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds---------Av~~iM-~~Vd 524 (640)
..+++|-|.+..+..+++.+.+.| -+|++. .|.+.|...+ +...|..+..+... .+-..+ .++.
T Consensus 110 ~~v~~t~G~~~al~~~~~~l~~~g--d~Vl~~--~p~y~~~~~~--~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~ 183 (404)
T 2o1b_A 110 DEVCILYGTKNGLVAVPTCVINPG--DYVLLP--DPGYTDYLAG--VLLADGKPVPLNLEPPHYLPDWSKVDSQIIDKTK 183 (404)
T ss_dssp TSEEEESSHHHHHHHHHHHHCCTT--CEEEEE--ESCCSSHHHH--HHHTTCEEEEEECCTTTCCCCGGGSCHHHHHHEE
T ss_pred ccEEEcCCcHHHHHHHHHHhcCCC--CEEEEc--CCCchhHHHH--HHHCCCEEEEeccCcccCcCCHHHHHHhhccCce
Confidence 467888777777766666554333 345554 4555554433 34467777766521 111111 2455
Q ss_pred EEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 525 RVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 525 kVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
.|++. .--...|.++..-=-..|+-+|+.|++.+++
T Consensus 184 ~v~l~-~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 219 (404)
T 2o1b_A 184 LIYLT-YPNNPTGSTATKEVFDEAIAKFKGTDTKIVH 219 (404)
T ss_dssp EEEEC-SSCTTTCCCCCHHHHHHHHHHHTTSSCEEEE
T ss_pred EEEEc-CCCCCCCccCCHHHHHHHHHHHHHcCCEEEE
Confidence 56553 2212234443321123467788999998776
No 264
>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D
Probab=30.78 E-value=1.5e+02 Score=29.23 Aligned_cols=52 Identities=27% Similarity=0.394 Sum_probs=34.4
Q ss_pred ccCCCEEEeecCcHHH-HHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEE
Q 006577 452 IRDGDVLLTYGSSSAV-EMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTY 510 (640)
Q Consensus 452 I~dgdvILT~g~SstV-~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTl 510 (640)
++.|++||.+|.++.+ ..++..|+..| .+|+++++.+.. ..++ .+.|.+..+
T Consensus 123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~G--a~Vi~~~~~~~~--~~~~---~~~ga~~~~ 175 (302)
T 1iz0_A 123 ARPGEKVLVQAAAGALGTAAVQVARAMG--LRVLAAASRPEK--LALP---LALGAEEAA 175 (302)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHTT--CEEEEEESSGGG--SHHH---HHTTCSEEE
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCC--CEEEEEeCCHHH--HHHH---HhcCCCEEE
Confidence 7889999999986554 44556666666 478988876543 2333 345776544
No 265
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Probab=30.70 E-value=82 Score=31.82 Aligned_cols=55 Identities=16% Similarity=0.189 Sum_probs=37.1
Q ss_pred hccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEec
Q 006577 451 KIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI 513 (640)
Q Consensus 451 ~I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D 513 (640)
.+..|++||.+|.++.=..++.-|+..|- +||+++..+... ++ +.+.|.+..+ .|
T Consensus 173 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga--~Vi~~~~~~~~~--~~---~~~lGa~~v~-~~ 227 (348)
T 3two_A 173 KVTKGTKVGVAGFGGLGSMAVKYAVAMGA--EVSVFARNEHKK--QD---ALSMGVKHFY-TD 227 (348)
T ss_dssp TCCTTCEEEEESCSHHHHHHHHHHHHTTC--EEEEECSSSTTH--HH---HHHTTCSEEE-SS
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCC--eEEEEeCCHHHH--HH---HHhcCCCeec-CC
Confidence 56789999999975444455566666664 799988777542 23 3456877766 44
No 266
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Probab=30.67 E-value=4e+02 Score=27.46 Aligned_cols=97 Identities=13% Similarity=-0.086 Sum_probs=54.6
Q ss_pred EEEeecCcHHHHHHHHHHHH--------cCC---eeEEEEcCCCCCchHHHHHHHHHhCCCceEEEech---------HH
Q 006577 457 VLLTYGSSSAVEMILQHAHE--------LGK---QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN---------AI 516 (640)
Q Consensus 457 vILT~g~SstV~~vL~~A~e--------~Gk---~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds---------Av 516 (640)
.++|-|-|..+...|..+.. .|. +-+|++.+ .+ ..+.+.+...|+.+.++... ++
T Consensus 106 ~~~t~ggtea~~~al~a~~~~~~~~~~~~G~~~~~~~vi~~~---~h--~~~~~~~~~~G~~v~~v~~~~~~~~~d~~~l 180 (452)
T 2dgk_A 106 GTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP---VQ--ICWHKFARYWDVELREIPMRPGQLFMDPKRM 180 (452)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEESS---CC--HHHHHHHHHTTCEEEECCCBTTBCSCCHHHH
T ss_pred eEEeCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEECC---Cc--HHHHHHHHHcCceEEEEecCCCCCeECHHHH
Confidence 67777777666555554432 452 34777765 22 22234445569888887632 22
Q ss_pred HHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhh------CCCcEEE
Q 006577 517 SYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYG------FHIPVLV 561 (640)
Q Consensus 517 ~~iM~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~------~~VPVyV 561 (640)
-..+.+-+++|+....-...|.+.. --.|+-+|+. +++.|+|
T Consensus 181 ~~~i~~~t~~v~~~~~~n~tG~~~~---l~~I~~ia~~~~~~~~~~~~l~v 228 (452)
T 2dgk_A 181 IEACDENTIGVVPTFGVTYTGNYEF---PQPLHDALDKFQADTGIDIDMHI 228 (452)
T ss_dssp HHHCCTTEEEEECBBSCTTTCBBCC---HHHHHHHHHHHHHHHCCCCCEEE
T ss_pred HHHHhhCCEEEEEEcCCcCCcccCC---HHHHHHHHHHHhhccCCCCcEEE
Confidence 2333333456665555555565532 2456667777 4898887
No 267
>2vqe_K 30S ribosomal protein S11, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.55.4.1 PDB: 1gix_N* 1hnw_K* 1hnx_K* 1hnz_K* 1hr0_K 1ibk_K* 1ibl_K* 1ibm_K 1j5e_K 1jgo_N* 1jgp_N* 1jgq_N* 1ml5_N* 1n32_K* 1n33_K* 1n34_K 1n36_K 1xmo_K* 1xmq_K* 1xnq_K* ...
Probab=30.57 E-value=62 Score=29.63 Aligned_cols=45 Identities=18% Similarity=0.194 Sum_probs=33.9
Q ss_pred HHHHHHHHHHcC-CeeEEEEcCCCCCchHHHHH-HHHHhCCCceEEEech
Q 006577 467 VEMILQHAHELG-KQFRVVIVDSRPKHEGKLLL-RRLVRKGLSCTYTHIN 514 (640)
Q Consensus 467 V~~vL~~A~e~G-k~f~ViV~ESRP~~eG~~La-~eL~~~GI~vTlI~Ds 514 (640)
.+.+...|.+.| +.++|+|--. ..|++.+ +.|...|+.++.|.|.
T Consensus 65 a~~~~~~~~~~Gi~~v~V~vkG~---G~Gre~airaL~~~Gl~I~~I~Dv 111 (129)
T 2vqe_K 65 ALDAAKKAMAYGMQSVDVIVRGT---GAGREQAIRALQASGLQVKSIVDD 111 (129)
T ss_dssp HHHHHHHHHTTTCCEEEEEEESC---CTTHHHHHHHHHTSSSEEEECEEC
T ss_pred HHHHHHHHHHhCCeEEEEEEECC---CCCHHHHHHHHHHCCCEEEEEEEc
Confidence 467777788877 4567777543 3566666 9999999999999984
No 268
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=30.50 E-value=1.2e+02 Score=25.83 Aligned_cols=79 Identities=11% Similarity=0.052 Sum_probs=45.8
Q ss_pred eeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHH-hh--hccEEEEcceeEecCCCeecccchHHHHHHHhh-C
Q 006577 480 QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYI-IH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYG-F 555 (640)
Q Consensus 480 ~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~i-M~--~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~-~ 555 (640)
..+|+|+|..+.. ...+...|...|+.|....+..-+.- +. ..|.||+..+- .+ .-|.-.+..+-+. .
T Consensus 3 ~~~ILivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dliild~~l--~~-----~~g~~~~~~l~~~~~ 74 (155)
T 1qkk_A 3 APSVFLIDDDRDL-RKAMQQTLELAGFTVSSFASATEALAGLSADFAGIVISDIRM--PG-----MDGLALFRKILALDP 74 (155)
T ss_dssp -CEEEEECSCHHH-HHHHHHHHHHTTCEEEEESCHHHHHHTCCTTCCSEEEEESCC--SS-----SCHHHHHHHHHHHCT
T ss_pred CCEEEEEeCCHHH-HHHHHHHHHHcCcEEEEECCHHHHHHHHHhCCCCEEEEeCCC--CC-----CCHHHHHHHHHhhCC
Confidence 4678888877643 23455777778888876554332222 22 47888887542 22 2243334444333 4
Q ss_pred CCcEEEecccc
Q 006577 556 HIPVLVCCEAY 566 (640)
Q Consensus 556 ~VPVyV~aety 566 (640)
++|+++++...
T Consensus 75 ~~pii~ls~~~ 85 (155)
T 1qkk_A 75 DLPMILVTGHG 85 (155)
T ss_dssp TSCEEEEECGG
T ss_pred CCCEEEEECCC
Confidence 89999987654
No 269
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=30.50 E-value=1.2e+02 Score=25.46 Aligned_cols=81 Identities=15% Similarity=0.154 Sum_probs=48.3
Q ss_pred CCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHH--HHhh-hccEEEEcceeEecCCCeecccchHHHHHHHh-
Q 006577 478 GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAIS--YIIH-EVTRVFLGASSVLSNGTVCSRVGTACVAMVAY- 553 (640)
Q Consensus 478 Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~--~iM~-~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk- 553 (640)
....+|+++|..+.. ...+...|...|+.|....+..-+ .+-. ..|.||+..+- .++ -|--.+..+-+
T Consensus 6 ~~~~~iLivd~~~~~-~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l--~~~-----~g~~~~~~l~~~ 77 (147)
T 2zay_A 6 GKWWRIMLVDTQLPA-LAASISALSQEGFDIIQCGNAIEAVPVAVKTHPHLIITEANM--PKI-----SGMDLFNSLKKN 77 (147)
T ss_dssp --CEEEEEECTTGGG-GHHHHHHHHHHTEEEEEESSHHHHHHHHHHHCCSEEEEESCC--SSS-----CHHHHHHHHHTS
T ss_pred CCCceEEEEeCCHHH-HHHHHHHHHHcCCeEEEeCCHHHHHHHHHcCCCCEEEEcCCC--CCC-----CHHHHHHHHHcC
Confidence 456789999888764 234557777789888765543322 2222 58999887543 221 24334444443
Q ss_pred --hCCCcEEEecccc
Q 006577 554 --GFHIPVLVCCEAY 566 (640)
Q Consensus 554 --~~~VPVyV~aety 566 (640)
..++|+++++...
T Consensus 78 ~~~~~~pii~ls~~~ 92 (147)
T 2zay_A 78 PQTASIPVIALSGRA 92 (147)
T ss_dssp TTTTTSCEEEEESSC
T ss_pred cccCCCCEEEEeCCC
Confidence 4589999987653
No 270
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}
Probab=30.42 E-value=3.7e+02 Score=26.52 Aligned_cols=96 Identities=9% Similarity=0.036 Sum_probs=51.0
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEec---hHHHHHhhh-------ccE
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI---NAISYIIHE-------VTR 525 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D---sAv~~iM~~-------Vdk 525 (640)
+.|++-+-+..+..+|....+.| -.|++. .|.+.+. ...+...|.++..+.. ..+-.++.+ +..
T Consensus 105 ~~i~~~sGt~a~~~~l~~~~~~g--d~v~~~--~~~~~~~--~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~ 178 (399)
T 3tqx_A 105 DTILYSSCFDANGGLFETLLGPE--DAIISD--ELNHASI--IDGIRLCKAQRYRYKNNAMGDLEAKLKEADEKGARFKL 178 (399)
T ss_dssp EEEEESCHHHHHHTTHHHHCCTT--CEEEEE--TTCCHHH--HHHHHSCCSEEEEECTTCTTHHHHHHHHHHTTTCSSEE
T ss_pred cEEEECchHHHHHHHHHHhcCCC--CEEEEC--CcccHHH--HHHHHHcCCceeEeCCCCHHHHHHHHHhhhccCCCceE
Confidence 34444333444444444443333 344443 4555543 3345567887777652 344444443 334
Q ss_pred EEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 526 VFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 526 VlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
|++.. .--..|.+.. --.|+-+|+.|++.+++
T Consensus 179 v~~~~-~~nptG~~~~---l~~i~~l~~~~~~~li~ 210 (399)
T 3tqx_A 179 IATDG-VFSMDGIIAD---LKSICDLADKYNALVMV 210 (399)
T ss_dssp EEEES-EETTTTEECC---HHHHHHHHHHTTCEEEE
T ss_pred EEEeC-CCCCCCCcCC---HHHHHHHHHHcCCEEEE
Confidence 44433 2334555554 45677889999998776
No 271
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Probab=30.42 E-value=3.2e+02 Score=27.81 Aligned_cols=100 Identities=14% Similarity=0.177 Sum_probs=51.9
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEec-------hHHHHHhh-------
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI-------NAISYIIH------- 521 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D-------sAv~~iM~------- 521 (640)
.+++|.|.+..+..++....+.| -+|++. .|.+.|.. ..+...|+.+..+.. ..+-..+.
T Consensus 110 ~i~~t~G~~~al~~~~~~l~~~g--d~Vlv~--~p~y~~~~--~~~~~~g~~~~~v~~~~~~~d~~~l~~~l~~~~~~~~ 183 (425)
T 2r2n_A 110 DLCVTSGSQQGLCKVFEMIINPG--DNVLLD--EPAYSGTL--QSLHPLGCNIINVASDESGIVPDSLRDILSRWKPEDA 183 (425)
T ss_dssp EEEEESSHHHHHHHHHHHHCCTT--CEEEEE--SSCCHHHH--HHHGGGTCEEEEECEETTEECHHHHHHHHTTSCSTTS
T ss_pred cEEEeCcHHHHHHHHHHHhCCCC--CEEEEe--CCCcHHHH--HHHHHcCCEEEEeCcCCCCCCHHHHHHHHHhhhcccc
Confidence 56777776666666666554444 345554 46676643 334556877776642 22333343
Q ss_pred ------hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 522 ------EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 522 ------~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
++..|++-..--...|.++..-=-..|+-+|+.|++.+++
T Consensus 184 ~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~li~ 229 (425)
T 2r2n_A 184 KNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLIIE 229 (425)
T ss_dssp SSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred ccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence 1233322111111224443322122567788999997665
No 272
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=30.23 E-value=3.7e+02 Score=28.47 Aligned_cols=83 Identities=17% Similarity=0.185 Sum_probs=53.5
Q ss_pred EEEEcCCCCCchHHHH----HHHHHhCCCceEEE--ec---hHHHHHhh---hccEEEEcceeEecCCCeecccchHHHH
Q 006577 482 RVVIVDSRPKHEGKLL----LRRLVRKGLSCTYT--HI---NAISYIIH---EVTRVFLGASSVLSNGTVCSRVGTACVA 549 (640)
Q Consensus 482 ~ViV~ESRP~~eG~~L----a~eL~~~GI~vTlI--~D---sAv~~iM~---~VdkVlvGADaIlaNG~VvNKiGT~~lA 549 (640)
+|.|+-..-+..=.+| +..|.+.|+++.++ .| ..++.++. +++.+++|+-++ ||++.-.+-....-
T Consensus 267 ~v~I~Y~S~yGnTe~mA~~ia~gl~~~Gv~~~~~~~~d~~~~~~s~i~~~i~~~~~ivlGspT~--~~~~~p~~~~~l~~ 344 (410)
T 4dik_A 267 KVTVIYDSMYGFVENVMKKAIDSLKEKGFTPVVYKFSDEERPAISEILKDIPDSEALIFGVSTY--EAEIHPLMRFTLLE 344 (410)
T ss_dssp EEEEEEECSSSHHHHHHHHHHHHHHHTTCEEEEEEECSSCCCCHHHHHHHSTTCSEEEEEECCT--TSSSCHHHHHHHHH
T ss_pred ceeeEEecccChHHHHHHHHHHHHHhcCCceEEEEeccCCCCCHHHHHHHHHhCCeEEEEeCCc--CCcCCHHHHHHHHH
Confidence 4544433334333334 46777899998754 33 23566665 799999999887 67788777766666
Q ss_pred HHHhhC-CCcEEEeccccc
Q 006577 550 MVAYGF-HIPVLVCCEAYK 567 (640)
Q Consensus 550 laAk~~-~VPVyV~aetyK 567 (640)
+.+..+ |+++.+ -++|-
T Consensus 345 l~~~~~~~K~~~~-FGSyG 362 (410)
T 4dik_A 345 IIDKANYEKPVLV-FGVHG 362 (410)
T ss_dssp HHHHCCCCCEEEE-EEECC
T ss_pred HHhcccCCCEEEE-EECCC
Confidence 666655 666655 46664
No 273
>1u2p_A Ptpase, low molecular weight protein-tyrosine- phosphatase; hydrolase; 1.90A {Mycobacterium tuberculosis} PDB: 1u2q_A
Probab=30.22 E-value=54 Score=30.31 Aligned_cols=67 Identities=13% Similarity=0.097 Sum_probs=44.4
Q ss_pred ecCcHHHHHHHHHHHH-cC--CeeEEEEcCCCCCchHH----HHHHHHHhCCCceEEEechHH-HHHhhhccEEEEc
Q 006577 461 YGSSSAVEMILQHAHE-LG--KQFRVVIVDSRPKHEGK----LLLRRLVRKGLSCTYTHINAI-SYIIHEVTRVFLG 529 (640)
Q Consensus 461 ~g~SstV~~vL~~A~e-~G--k~f~ViV~ESRP~~eG~----~La~eL~~~GI~vTlI~DsAv-~~iM~~VdkVlvG 529 (640)
.|+|..++.+|++..+ .| ..|.|.-.-+.++..|. +....|.+.||++. ..--.+ ...+.. |.||.=
T Consensus 15 ~cRSpmAEal~~~~~~~~gl~~~~~v~SAGt~~~~~G~~~~p~a~~~l~~~Gid~s-~~ar~l~~~~~~~-DlIi~M 89 (163)
T 1u2p_A 15 ICRSPMAEKMFAQQLRHRGLGDAVRVTSAGTGNWHVGSCADERAAGVLRAHGYPTD-HRAAQVGTEHLAA-DLLVAL 89 (163)
T ss_dssp SSHHHHHHHHHHHHHHHTTCTTTEEEEEEESSCTTTTCCCCHHHHHHHHHTTCCCC-CCCCBCCHHHHTS-SEEEES
T ss_pred HhHHHHHHHHHHHHHHHCCCCCcEEEEecccCCCcCCCCCCHHHHHHHHHcCcCCC-ceeeECChhhccC-CEEEEe
Confidence 3567889999988654 33 35899988888876552 44588999999976 321122 234456 777654
No 274
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*
Probab=30.21 E-value=2.5e+02 Score=28.19 Aligned_cols=112 Identities=7% Similarity=0.004 Sum_probs=57.0
Q ss_pred EEEeecCcHHHHHHHHHHHHcCCeeEEE-EcCCCCCchHHHHHHHH-HhCCCceEEEechHHHHHhhhccEEEEcc----
Q 006577 457 VLLTYGSSSAVEMILQHAHELGKQFRVV-IVDSRPKHEGKLLLRRL-VRKGLSCTYTHINAISYIIHEVTRVFLGA---- 530 (640)
Q Consensus 457 vILT~g~SstV~~vL~~A~e~Gk~f~Vi-V~ESRP~~eG~~La~eL-~~~GI~vTlI~DsAv~~iM~~VdkVlvGA---- 530 (640)
.|..+|....-...+....+....++++ |++..+. -+.++ .+.||++....|-.-..--.++|.|++..
T Consensus 4 rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~-----~~~~~~~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~~ 78 (344)
T 3mz0_A 4 RIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQE-----AAQKVVEQYQLNATVYPNDDSLLADENVDAVLVTSWGPA 78 (344)
T ss_dssp EEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHH-----HHHHHHHHTTCCCEEESSHHHHHHCTTCCEEEECSCGGG
T ss_pred EEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHH-----HHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEECCCchh
Confidence 4566666554444444443233456655 4444332 12222 23466555555533222223588888753
Q ss_pred -------------eeEecCCCeecccchHHHHHHHhhCCCcEEEeccccccccccc
Q 006577 531 -------------SSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQ 573 (640)
Q Consensus 531 -------------DaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~aetyKf~~~~~ 573 (640)
+.++.-=-..+--....+.-+|+..++.++.++-.+.|++.++
T Consensus 79 h~~~~~~al~~Gk~vl~EKP~a~~~~e~~~l~~~a~~~g~~~~~v~~~~r~~p~~~ 134 (344)
T 3mz0_A 79 HESSVLKAIKAQKYVFCEKPLATTAEGCMRIVEEEIKVGKRLVQVGFMRRYDSGYV 134 (344)
T ss_dssp HHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHHSSCCEEECCGGGGSHHHH
T ss_pred HHHHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHHCCEEEEEecccccCHHHH
Confidence 2222222223334445566677788888865566667766553
No 275
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=30.19 E-value=1.2e+02 Score=32.67 Aligned_cols=95 Identities=13% Similarity=-0.032 Sum_probs=56.5
Q ss_pred CCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEcceeE
Q 006577 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSV 533 (640)
Q Consensus 454 dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGADaI 533 (640)
.|..||..|...+...-++.+.+.|-.+.|+ +.+... . ..+|.+.| .++++...--...+..+|.||...
T Consensus 11 ~~~~vlVvGgG~va~~k~~~L~~~ga~V~vi--~~~~~~---~-~~~l~~~~-~i~~~~~~~~~~~l~~~~lVi~at--- 80 (457)
T 1pjq_A 11 RDRDCLIVGGGDVAERKARLLLEAGARLTVN--ALTFIP---Q-FTVWANEG-MLTLVEGPFDETLLDSCWLAIAAT--- 80 (457)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTTBEEEEE--ESSCCH---H-HHHHHTTT-SCEEEESSCCGGGGTTCSEEEECC---
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCcCEEEEE--cCCCCH---H-HHHHHhcC-CEEEEECCCCccccCCccEEEEcC---
Confidence 4778999999998888888888877655544 433222 1 23444322 344444221112234566665532
Q ss_pred ecCCCe-ecccchHHHHHHHhhCCCcEEEeccc
Q 006577 534 LSNGTV-CSRVGTACVAMVAYGFHIPVLVCCEA 565 (640)
Q Consensus 534 laNG~V-vNKiGT~~lAlaAk~~~VPVyV~aet 565 (640)
|+- + ...++..|+.++|||-|+.+.
T Consensus 81 ---~~~~~----n~~i~~~a~~~~i~vn~~d~~ 106 (457)
T 1pjq_A 81 ---DDDTV----NQRVSDAAESRRIFCNVVDAP 106 (457)
T ss_dssp ---SCHHH----HHHHHHHHHHTTCEEEETTCT
T ss_pred ---CCHHH----HHHHHHHHHHcCCEEEECCCc
Confidence 221 2 346888999999998776543
No 276
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=29.79 E-value=1.3e+02 Score=25.53 Aligned_cols=80 Identities=19% Similarity=0.086 Sum_probs=45.5
Q ss_pred CeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHH--HHHhh-hccEEEEcceeEecCCCeecccchHHHHHHHhh-
Q 006577 479 KQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAI--SYIIH-EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYG- 554 (640)
Q Consensus 479 k~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv--~~iM~-~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~- 554 (640)
+..+|+|+|..+.. ...+...|...|+.|....+..- ..+-. ..|.||+..+- .+ .-|.-.+..+.+.
T Consensus 6 ~~~~iLivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l--~~-----~~g~~~~~~l~~~~ 77 (154)
T 2rjn_A 6 KNYTVMLVDDEQPI-LNSLKRLIKRLGCNIITFTSPLDALEALKGTSVQLVISDMRM--PE-----MGGEVFLEQVAKSY 77 (154)
T ss_dssp SCCEEEEECSCHHH-HHHHHHHHHTTTCEEEEESCHHHHHHHHTTSCCSEEEEESSC--SS-----SCHHHHHHHHHHHC
T ss_pred CCCeEEEEcCCHHH-HHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCCCCEEEEecCC--CC-----CCHHHHHHHHHHhC
Confidence 45678888776643 23345667778887775554322 22222 57888886542 22 1233334444443
Q ss_pred CCCcEEEecccc
Q 006577 555 FHIPVLVCCEAY 566 (640)
Q Consensus 555 ~~VPVyV~aety 566 (640)
.++|+++++...
T Consensus 78 ~~~~ii~ls~~~ 89 (154)
T 2rjn_A 78 PDIERVVISGYA 89 (154)
T ss_dssp TTSEEEEEECGG
T ss_pred CCCcEEEEecCC
Confidence 479999987653
No 277
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=29.76 E-value=1.9e+02 Score=28.83 Aligned_cols=99 Identities=11% Similarity=0.094 Sum_probs=60.0
Q ss_pred cCCCEEEeecCcH-------HHHHHHHHHHHcC--CeeEEEEcCCCCCchHHHHHHHHHhCCCceEEE----echHHHHH
Q 006577 453 RDGDVLLTYGSSS-------AVEMILQHAHELG--KQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT----HINAISYI 519 (640)
Q Consensus 453 ~dgdvILT~g~Ss-------tV~~vL~~A~e~G--k~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI----~DsAv~~i 519 (640)
.++-+|+..|+-. .+..++....+++ .+++++++-..+......+.....+.| ++.++ .+..+..+
T Consensus 249 ~~~~~i~~~G~~~~~~Kg~~~li~a~~~l~~~~~~~~~~l~i~G~g~~~~~~~l~~~~~~~~-~~~~~~g~~~~~~~~~~ 327 (439)
T 3fro_A 249 DEGVTFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEKHG-NVKVITEMLSREFVREL 327 (439)
T ss_dssp CSCEEEEEECCSSCTTBCHHHHHHHHHHHHTSGGGGGEEEEEECCCCHHHHHHHHHHHHHCT-TEEEECSCCCHHHHHHH
T ss_pred CCCcEEEEEcccccccccHHHHHHHHHHHHhcccCCCeEEEEEcCCChhHHHHHHHHHhhcC-CEEEEcCCCCHHHHHHH
Confidence 4445677777644 1333444444444 678988887666332244444445566 66653 45668899
Q ss_pred hhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEe
Q 006577 520 IHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (640)
Q Consensus 520 M~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~ 562 (640)
|..+|.+|+-... .| .| ...+=|-.+|+||++.
T Consensus 328 ~~~adv~v~ps~~---e~-----~~--~~~~EAma~G~Pvi~s 360 (439)
T 3fro_A 328 YGSVDFVIIPSYF---EP-----FG--LVALEAMCLGAIPIAS 360 (439)
T ss_dssp HTTCSEEEECBSC---CS-----SC--HHHHHHHHTTCEEEEE
T ss_pred HHHCCEEEeCCCC---CC-----cc--HHHHHHHHCCCCeEEc
Confidence 9999999877532 22 22 2345566789999884
No 278
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=29.73 E-value=1.5e+02 Score=25.49 Aligned_cols=81 Identities=17% Similarity=0.187 Sum_probs=46.5
Q ss_pred CCeeEEEEcCCCCCchHHHHHHHHHhCCCceE-EEechH--HHHHhh---hccEEEEcceeEecCCCeecccchHHHHHH
Q 006577 478 GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCT-YTHINA--ISYIIH---EVTRVFLGASSVLSNGTVCSRVGTACVAMV 551 (640)
Q Consensus 478 Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vT-lI~DsA--v~~iM~---~VdkVlvGADaIlaNG~VvNKiGT~~lAla 551 (640)
+..++|+|+|..+.. ...|...|.+.|+.+. ...+.. +..+-. ..|.||+..+- .+ .-|--.+..+
T Consensus 34 ~~~~~Ilivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~~al~~l~~~~~~~dliilD~~l--~~-----~~g~~~~~~l 105 (157)
T 3hzh_A 34 GIPFNVLIVDDSVFT-VKQLTQIFTSEGFNIIDTAADGEEAVIKYKNHYPNIDIVTLXITM--PK-----MDGITCLSNI 105 (157)
T ss_dssp TEECEEEEECSCHHH-HHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGCCEEEECSSC--SS-----SCHHHHHHHH
T ss_pred CCceEEEEEeCCHHH-HHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCCCCCEEEEeccC--CC-----ccHHHHHHHH
Confidence 456788888887653 2344577778888876 333322 222221 56888887542 22 2233333333
Q ss_pred Hh-hCCCcEEEecccc
Q 006577 552 AY-GFHIPVLVCCEAY 566 (640)
Q Consensus 552 Ak-~~~VPVyV~aety 566 (640)
-+ ..++|+++++...
T Consensus 106 r~~~~~~~ii~ls~~~ 121 (157)
T 3hzh_A 106 MEFDKNARVIMISALG 121 (157)
T ss_dssp HHHCTTCCEEEEESCC
T ss_pred HhhCCCCcEEEEeccC
Confidence 33 4579999987653
No 279
>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B
Probab=29.73 E-value=1.7e+02 Score=30.18 Aligned_cols=97 Identities=16% Similarity=0.153 Sum_probs=51.0
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHH-HH-HHHhCCCceEEEech---HHHHHhh-hccEEEEc
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLL-LR-RLVRKGLSCTYTHIN---AISYIIH-EVTRVFLG 529 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~L-a~-eL~~~GI~vTlI~Ds---Av~~iM~-~VdkVlvG 529 (640)
+.|++-+-+..+..++. ..+.| -+|++.+ |.+.|... .. .+...|+.+.++... .+-..+. +...|++
T Consensus 84 ~~i~~~sG~~ai~~~~~-l~~~g--d~Vl~~~--~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~~i~~~t~~v~~- 157 (403)
T 3cog_A 84 YCLAFASGLAATVTITH-LLKAG--DQIICMD--DVYGGTNRYFRQVASEFGLKISFVDCSKIKLLEAAITPETKLVWI- 157 (403)
T ss_dssp EEEEESCHHHHHHHHHT-TSCTT--CEEEEES--SCCHHHHHHHHHTGGGGTCEEEEECTTSHHHHHHHCCTTEEEEEE-
T ss_pred cEEEECCHHHHHHHHHH-HhCCC--CEEEEeC--CCcchHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCcCCeEEEE-
Confidence 34444333444444444 43333 3566654 67766433 22 345679999998732 2333333 3334443
Q ss_pred ceeEecCCCeecccchHHHHHHHhhCC-CcEEE
Q 006577 530 ASSVLSNGTVCSRVGTACVAMVAYGFH-IPVLV 561 (640)
Q Consensus 530 ADaIlaNG~VvNKiGT~~lAlaAk~~~-VPVyV 561 (640)
..---..|.+.. --.|+-+|++++ +.++|
T Consensus 158 ~~p~nptG~~~~---l~~i~~la~~~g~~~liv 187 (403)
T 3cog_A 158 ETPTNPTQKVID---IEGCAHIVHKHGDIILVV 187 (403)
T ss_dssp ESSCTTTCCCCC---HHHHHHHHTSSSCCEEEE
T ss_pred ECCCCCCCeeeC---HHHHHHHHHHcCCCEEEE
Confidence 222223455553 456777899999 87766
No 280
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=29.71 E-value=1.8e+02 Score=25.97 Aligned_cols=79 Identities=16% Similarity=0.162 Sum_probs=46.5
Q ss_pred eeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHH-hh--hccEEEEcceeEecCCCeecccchHHHHHHHh-hC
Q 006577 480 QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYI-IH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAY-GF 555 (640)
Q Consensus 480 ~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~i-M~--~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk-~~ 555 (640)
..+|.|+|..|.. ...|...|...|+.|....+..-+.- +. ..|.||+..+ +.++ -|.-.+..+-+ ..
T Consensus 7 ~~~iLivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~--lp~~-----~g~~~~~~l~~~~~ 78 (184)
T 3rqi_A 7 DKNFLVIDDNEVF-AGTLARGLERRGYAVRQAHNKDEALKLAGAEKFEFITVXLH--LGND-----SGLSLIAPLCDLQP 78 (184)
T ss_dssp CCEEEEECSCHHH-HHHHHHHHHHTTCEEEEECSHHHHHHHHTTSCCSEEEECSE--ETTE-----ESHHHHHHHHHHCT
T ss_pred CCeEEEEcCCHHH-HHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCCCCEEEEecc--CCCc-----cHHHHHHHHHhcCC
Confidence 4578888877754 22344667778888766555433322 22 4788888543 3332 24444444333 45
Q ss_pred CCcEEEecccc
Q 006577 556 HIPVLVCCEAY 566 (640)
Q Consensus 556 ~VPVyV~aety 566 (640)
++||++++...
T Consensus 79 ~~~ii~lt~~~ 89 (184)
T 3rqi_A 79 DARILVLTGYA 89 (184)
T ss_dssp TCEEEEEESSC
T ss_pred CCCEEEEeCCC
Confidence 79999987654
No 281
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=29.62 E-value=1.8e+02 Score=24.06 Aligned_cols=79 Identities=18% Similarity=0.209 Sum_probs=44.1
Q ss_pred CeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHH-Hh---hhccEEEEcceeEecCCCeecccchHHHHHHHh-
Q 006577 479 KQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISY-II---HEVTRVFLGASSVLSNGTVCSRVGTACVAMVAY- 553 (640)
Q Consensus 479 k~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~-iM---~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk- 553 (640)
...+|+++|..+.. ...+...|...|+.|....+..-+. .+ ...|.||+..+ +.+. -|.-.+..+-.
T Consensus 14 ~~~~ilivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~dlvilD~~--l~~~-----~g~~~~~~l~~~ 85 (138)
T 2b4a_A 14 QPFRVTLVEDEPSH-ATLIQYHLNQLGAEVTVHPSGSAFFQHRSQLSTCDLLIVSDQ--LVDL-----SIFSLLDIVKEQ 85 (138)
T ss_dssp CCCEEEEECSCHHH-HHHHHHHHHHTTCEEEEESSHHHHHHTGGGGGSCSEEEEETT--CTTS-----CHHHHHHHHTTS
T ss_pred CCCeEEEECCCHHH-HHHHHHHHHHcCCEEEEeCCHHHHHHHHHhCCCCCEEEEeCC--CCCC-----CHHHHHHHHHhh
Confidence 45677888776643 2334566777788776655433322 22 24788887643 2221 23333333333
Q ss_pred hCCCcEEEec-cc
Q 006577 554 GFHIPVLVCC-EA 565 (640)
Q Consensus 554 ~~~VPVyV~a-et 565 (640)
..++|+++++ ..
T Consensus 86 ~~~~~ii~ls~~~ 98 (138)
T 2b4a_A 86 TKQPSVLILTTGR 98 (138)
T ss_dssp SSCCEEEEEESCC
T ss_pred CCCCCEEEEECCC
Confidence 3479999986 44
No 282
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=29.61 E-value=1.5e+02 Score=30.31 Aligned_cols=98 Identities=18% Similarity=0.282 Sum_probs=48.2
Q ss_pred EEEeecCcHHHHHHH---HHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEech-----------------H-
Q 006577 457 VLLTYGSSSAVEMIL---QHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN-----------------A- 515 (640)
Q Consensus 457 vILT~g~SstV~~vL---~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds-----------------A- 515 (640)
.|.|++..+-|..++ +.+.++|-..+|+.. +. +...+...|+++.-+... .
T Consensus 4 li~~~gt~Ghv~p~~~La~~L~~~Gh~V~v~~~---~~-----~~~~v~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 75 (404)
T 3h4t_A 4 LITGCGSRGDTEPLVALAARLRELGADARMCLP---PD-----YVERCAEVGVPMVPVGRAVRAGAREPGELPPGAAEVV 75 (404)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHTTCCEEEEEC---GG-----GHHHHHHTTCCEEECSSCSSGGGSCTTCCCTTCGGGH
T ss_pred EEEeCCCCccHHHHHHHHHHHHHCCCeEEEEeC---HH-----HHHHHHHcCCceeecCCCHHHHhccccCCHHHHHHHH
Confidence 356677777665544 334456655555432 22 233455678776655411 0
Q ss_pred ---HHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEeccc
Q 006577 516 ---ISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEA 565 (640)
Q Consensus 516 ---v~~iM~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~aet 565 (640)
+...+.....++-++|.|..+|.. ......+++|...+||++.++-+
T Consensus 76 ~~~~~~~~~~l~~~~~~pD~Vi~~~~~---~~~~~a~~~A~~lgiP~v~~~~~ 125 (404)
T 3h4t_A 76 TEVVAEWFDKVPAAIEGCDAVVTTGLL---PAAVAVRSMAEKLGIPYRYTVLS 125 (404)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEEEEECH---HHHHHHHHHHHHHTCCEEEEESS
T ss_pred HHHHHHHHHHHHHHhcCCCEEEECCch---hhhhhhhhHHhhcCCCEEEEEcC
Confidence 111111110011145666555421 11222267899999999976543
No 283
>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}
Probab=29.60 E-value=38 Score=34.01 Aligned_cols=104 Identities=10% Similarity=0.058 Sum_probs=59.1
Q ss_pred CCEEEeecCcHHHHHHH-HHHHHcCCeeEEEEcCCCCCchHHHHHHHHH-hCCCceEEE----echHHHHHhhhccEEEE
Q 006577 455 GDVLLTYGSSSAVEMIL-QHAHELGKQFRVVIVDSRPKHEGKLLLRRLV-RKGLSCTYT----HINAISYIIHEVTRVFL 528 (640)
Q Consensus 455 gdvILT~g~SstV~~vL-~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~-~~GI~vTlI----~DsAv~~iM~~VdkVlv 528 (640)
+.+||..|-++.+-..| +.+.++ ..++|+++.-++... ..|. ..++.+... ....+..++.++|.||-
T Consensus 24 ~~~vlVtGatG~iG~~l~~~L~~~-~g~~V~~~~r~~~~~-----~~~~~~~~v~~~~~Dl~~d~~~~~~~~~~~d~Vih 97 (372)
T 3slg_A 24 AKKVLILGVNGFIGHHLSKRILET-TDWEVFGMDMQTDRL-----GDLVKHERMHFFEGDITINKEWVEYHVKKCDVILP 97 (372)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHH-SSCEEEEEESCCTTT-----GGGGGSTTEEEEECCTTTCHHHHHHHHHHCSEEEE
T ss_pred CCEEEEECCCChHHHHHHHHHHhC-CCCEEEEEeCChhhh-----hhhccCCCeEEEeCccCCCHHHHHHHhccCCEEEE
Confidence 46899999887765544 444454 135777776444221 1111 234433321 12345567778998886
Q ss_pred cceeEecCCC--------eecccchHHHHHHHhhCCCcEEEecc
Q 006577 529 GASSVLSNGT--------VCSRVGTACVAMVAYGFHIPVLVCCE 564 (640)
Q Consensus 529 GADaIlaNG~--------VvNKiGT~~lAlaAk~~~VPVyV~ae 564 (640)
-|-....... -+|-.||..+.-+|+.++..|+.++.
T Consensus 98 ~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~v~~SS 141 (372)
T 3slg_A 98 LVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFPST 141 (372)
T ss_dssp CBCCCCHHHHHHCHHHHHHHHTTTTHHHHHHHHHHTCEEEEECC
T ss_pred cCccccHHHHhhCHHHHHHHHHHHHHHHHHHHHHhCCcEEEeCc
Confidence 5532221110 24678999999899888855555544
No 284
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}
Probab=29.52 E-value=79 Score=31.87 Aligned_cols=107 Identities=17% Similarity=0.132 Sum_probs=52.7
Q ss_pred ccCCCEEEeecCcHHHHHHHHHHHHcCC---eeEEEEcCCCCCchHHHHH-HH---HHhCCCceEEEech---------H
Q 006577 452 IRDGDVLLTYGSSSAVEMILQHAHELGK---QFRVVIVDSRPKHEGKLLL-RR---LVRKGLSCTYTHIN---------A 515 (640)
Q Consensus 452 I~dgdvILT~g~SstV~~vL~~A~e~Gk---~f~ViV~ESRP~~eG~~La-~e---L~~~GI~vTlI~Ds---------A 515 (640)
+....+|+|-|.+..+..+++.+.+.|. .-+|++.| .|.+.|...+ .. +...+..+..+.+. .
T Consensus 96 ~~~~~i~~t~G~t~al~~~~~~l~~~gd~~~~~~vi~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 174 (417)
T 3g7q_A 96 IEPQNIALTNGSQSAFFYLFNLFAGRRADGSTKKVLFPL-APEYIGYADSGLEDDLFVSARPNIELLPEGQFKYHVDFEH 174 (417)
T ss_dssp CCGGGEEEESCHHHHHHHHHHHHSBC----CCBEEEESS-CCCHHHHHC-----CCEEECCCEEEEEGGGEEEEECCGGG
T ss_pred CCcccEEEeCCcHHHHHHHHHHHcCCCccCCcceEEEeC-CCccccchhhccchhhhccccCcccccCCcccccccCHHH
Confidence 3445788887777777666666544332 23677654 4666665433 21 12234444433322 1
Q ss_pred HHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 516 ISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 516 v~~iM~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
+- +-+++..|++. ..--..|.++..---..|+-+|++|++.+++
T Consensus 175 l~-~~~~~~~v~~~-~p~NptG~~~~~~~~~~l~~~a~~~~~~li~ 218 (417)
T 3g7q_A 175 LH-IGEETGMICVS-RPTNPTGNVITDEELMKLDRLANQHNIPLVI 218 (417)
T ss_dssp CC-CCTTEEEEEEE-SSCTTTCCCCCHHHHHHHHHHHHHTTCCEEE
T ss_pred hc-cccCceEEEEC-CCCCCCCCccCHHHHHHHHHHHHHcCCEEEE
Confidence 11 11123333331 1112234444433345677789999998887
No 285
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=29.51 E-value=2e+02 Score=23.52 Aligned_cols=77 Identities=16% Similarity=0.174 Sum_probs=42.6
Q ss_pred eEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHH-Hhh--hccEEEEcceeEecCCCeecccchHHHHHHHhh-CC
Q 006577 481 FRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISY-IIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYG-FH 556 (640)
Q Consensus 481 f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~-iM~--~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~-~~ 556 (640)
.+|+|+|..+.. ...+...|...|+.|....+..-+. .+. ..|.||+..+ +.+. -|.-.+..+.+. ..
T Consensus 4 ~~ilivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvl~D~~--l~~~-----~g~~~~~~l~~~~~~ 75 (136)
T 1mvo_A 4 KKILVVDDEESI-VTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVM--LPKL-----DGIEVCKQLRQQKLM 75 (136)
T ss_dssp CEEEEECSCHHH-HHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEESS--CSSS-----CHHHHHHHHHHTTCC
T ss_pred CEEEEEECCHHH-HHHHHHHHHHCCcEEEEecCHHHHHHHHhhcCCCEEEEecC--CCCC-----CHHHHHHHHHcCCCC
Confidence 467777766543 2234466777788776555432222 222 5788888654 2322 243334444333 57
Q ss_pred CcEEEeccc
Q 006577 557 IPVLVCCEA 565 (640)
Q Consensus 557 VPVyV~aet 565 (640)
+|+++++..
T Consensus 76 ~~ii~~s~~ 84 (136)
T 1mvo_A 76 FPILMLTAK 84 (136)
T ss_dssp CCEEEEECT
T ss_pred CCEEEEECC
Confidence 999988654
No 286
>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*
Probab=29.50 E-value=1.6e+02 Score=29.77 Aligned_cols=100 Identities=15% Similarity=0.099 Sum_probs=51.8
Q ss_pred CCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCc-eEEEechHH-HHH--h---hhccEE
Q 006577 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLS-CTYTHINAI-SYI--I---HEVTRV 526 (640)
Q Consensus 454 dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~-vTlI~DsAv-~~i--M---~~VdkV 526 (640)
...+++|-|.+..+.. +..+...| -+|++. .|.+.|... .+...|+. +..+....- .+. + .++..|
T Consensus 95 ~~~v~~~~G~~~al~~-~~~~~~~g--d~Vl~~--~p~y~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~v 167 (400)
T 3asa_A 95 AKEIFISDGAKVDLFR-LLSFFGPN--QTVAIQ--DPSYPAYLD--IARLTGAKEIIALPCLQENAFFPEFPEDTHIDIL 167 (400)
T ss_dssp GGGEEEESCHHHHHHH-HHHHHCSS--CEEEEE--ESCCHHHHH--HHHHTTCSEEEEEECCGGGTTCCCCCTTCCCSEE
T ss_pred HHHEEEccChHHHHHH-HHHHcCCC--CEEEEC--CCCcHHHHH--HHHHcCCcceEecccchhcCcccChhhccCccEE
Confidence 3467777776665554 33444333 355554 367766543 34456887 777653211 111 1 244555
Q ss_pred EEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 527 FLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 527 lvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
++. ..-...|.++..-=-..|+-+|+++++.+++
T Consensus 168 ~l~-~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 201 (400)
T 3asa_A 168 CLC-SPNNPTGTVLNKDQLRAIVHYAIEHEILILF 201 (400)
T ss_dssp EEE-SSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred EEe-CCCCCCCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence 553 2222234444322123466678999997765
No 287
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=29.33 E-value=3.2e+02 Score=27.10 Aligned_cols=96 Identities=15% Similarity=0.116 Sum_probs=53.6
Q ss_pred EEeecC-cHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEec--------hHHHHHhh--hccEE
Q 006577 458 LLTYGS-SSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--------NAISYIIH--EVTRV 526 (640)
Q Consensus 458 ILT~g~-SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D--------sAv~~iM~--~VdkV 526 (640)
|+..+. +..+..++..+.+.| -+|++.+ |.+-|..+...+...|+.+..+.. ..+-..+. ++..|
T Consensus 67 v~~~~sgt~al~~~~~~~~~~g--d~Vl~~~--~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v 142 (411)
T 3nnk_A 67 MLVDGTSRAGIEAILVSAIRPG--DKVLVPV--FGRFGHLLCEIARRCRAEVHTIEVPWGEVFTPDQVEDAVKRIRPRLL 142 (411)
T ss_dssp EEEESCHHHHHHHHHHHHCCTT--CEEEEEE--CSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEE
T ss_pred EEECCCcHHHHHHHHHHhcCCC--CEEEEec--CCchHHHHHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHhhCCCeEE
Confidence 433333 444555565554333 3566554 555555555666778888877752 23333443 46666
Q ss_pred EEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 527 FLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 527 lvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
++-. .=...|.+.. --.|+-+|+.|++.+++
T Consensus 143 ~~~~-~~nptG~~~~---l~~i~~l~~~~~~~li~ 173 (411)
T 3nnk_A 143 LTVQ-GDTSTTMLQP---LAELGEICRRYDALFYT 173 (411)
T ss_dssp EEES-EETTTTEECC---CTTHHHHHHHHTCEEEE
T ss_pred EEeC-CCCCcceecc---HHHHHHHHHHcCCEEEE
Confidence 6532 2223454433 23577788999998776
No 288
>3j20_M 30S ribosomal protein S11P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=29.30 E-value=87 Score=29.00 Aligned_cols=48 Identities=19% Similarity=0.165 Sum_probs=35.7
Q ss_pred HHHHHHHHHHcCC-eeEEEEcCC-----CCCchHHHHH-HHHHhCCCceEEEech
Q 006577 467 VEMILQHAHELGK-QFRVVIVDS-----RPKHEGKLLL-RRLVRKGLSCTYTHIN 514 (640)
Q Consensus 467 V~~vL~~A~e~Gk-~f~ViV~ES-----RP~~eG~~La-~eL~~~GI~vTlI~Ds 514 (640)
.+.+...|.+.|. .++|+|--. +....|++.+ +.|...|+.+..|.|.
T Consensus 64 a~~~~~~a~e~Gi~~v~V~vkG~gg~~~~~pG~GresairaL~~~Gl~I~~I~Dv 118 (137)
T 3j20_M 64 ARRAAEEALEKGIVGVHIRVRAPGGSKSKTPGPGAQAAIRALARAGLKIGRVEDV 118 (137)
T ss_dssp HHHHHHHHHHHTEEEEEEEEECCCSSSCCSCCTHHHHHHHHHHHHTCEEEEEEEC
T ss_pred HHHHHHHHHHcCCeEEEEEEECCCCCCCcCCCCcHHHHHHHHHhCCCEEEEEEEc
Confidence 4667777888884 466666542 2346788887 9999999999999884
No 289
>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0
Probab=29.11 E-value=25 Score=33.92 Aligned_cols=90 Identities=12% Similarity=0.146 Sum_probs=48.1
Q ss_pred EEEeecCcHHHHHHHHH-HHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhh--hccEEEEcceeE
Q 006577 457 VLLTYGSSSAVEMILQH-AHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIH--EVTRVFLGASSV 533 (640)
Q Consensus 457 vILT~g~SstV~~vL~~-A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~--~VdkVlvGADaI 533 (640)
+||..|-++.+-..|.. +.++| .+|+++.-.+. -+.....+..++. ++|.||--|-..
T Consensus 7 ~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~-----------------D~~d~~~~~~~~~~~~~d~vi~~a~~~ 67 (287)
T 3sc6_A 7 RVIITGANGQLGKQLQEELNPEE--YDIYPFDKKLL-----------------DITNISQVQQVVQEIRPHIIIHCAAYT 67 (287)
T ss_dssp EEEEESTTSHHHHHHHHHSCTTT--EEEEEECTTTS-----------------CTTCHHHHHHHHHHHCCSEEEECCCCC
T ss_pred EEEEECCCCHHHHHHHHHHHhCC--CEEEEeccccc-----------------CCCCHHHHHHHHHhcCCCEEEECCccc
Confidence 57777776665443333 33333 56666543211 1111233444555 467766554322
Q ss_pred ecCC--------CeecccchHHHHHHHhhCCCcEEEeccc
Q 006577 534 LSNG--------TVCSRVGTACVAMVAYGFHIPVLVCCEA 565 (640)
Q Consensus 534 laNG--------~VvNKiGT~~lAlaAk~~~VPVyV~aet 565 (640)
..+. .-+|-.||..+.-+|+.+++.|+.++..
T Consensus 68 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~v~~SS~ 107 (287)
T 3sc6_A 68 KVDQAEKERDLAYVINAIGARNVAVASQLVGAKLVYISTD 107 (287)
T ss_dssp CHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTCEEEEEEEG
T ss_pred ChHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEchh
Confidence 1111 1246678999999999999986665544
No 290
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=29.09 E-value=2.5e+02 Score=29.60 Aligned_cols=87 Identities=16% Similarity=0.220 Sum_probs=47.5
Q ss_pred HHHHHHHHHHcCCeeEEEEcCCCCCchHHHH-HH-HHHhCCCceEEEech---HHHHHhhhccEEEEcceeE-ecCCCee
Q 006577 467 VEMILQHAHELGKQFRVVIVDSRPKHEGKLL-LR-RLVRKGLSCTYTHIN---AISYIIHEVTRVFLGASSV-LSNGTVC 540 (640)
Q Consensus 467 V~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~L-a~-eL~~~GI~vTlI~Ds---Av~~iM~~VdkVlvGADaI-laNG~Vv 540 (640)
+..+|..+.+.| -+|++. .|.+.|... .. .+...|+.++++... ++...+..-+++|+ .+.. -..|.+.
T Consensus 110 i~~al~al~~~G--d~Vi~~--~~~y~~~~~~~~~~~~~~G~~~~~v~~~d~~~l~~ai~~~t~~v~-~e~p~NptG~~~ 184 (430)
T 3ri6_A 110 ISTAILTLARAG--DSVVTT--DRLFGHTLSLFQKTLPSFGIEVRFVDVMDSLAVEHACDETTKLLF-LETISNPQLQVA 184 (430)
T ss_dssp HHHHHHHHCCTT--CEEEEE--TTCCHHHHHHHHTHHHHTTCEEEEECTTCHHHHHHHCCTTEEEEE-EESSCTTTCCCC
T ss_pred HHHHHHHHhCCC--CEEEEc--CCCchhHHHHHHHHHHHcCCEEEEeCCCCHHHHHHhhCCCCeEEE-EECCCCCCCeec
Confidence 344444443333 355554 455555443 32 667789999998733 33333433234433 2222 2244444
Q ss_pred cccchHHHHHHHhhCCCcEEE
Q 006577 541 SRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 541 NKiGT~~lAlaAk~~~VPVyV 561 (640)
. --.|+-+|++++++++|
T Consensus 185 d---l~~i~~la~~~g~~liv 202 (430)
T 3ri6_A 185 D---LEALSKVVHAKGIPLVV 202 (430)
T ss_dssp C---HHHHHHHHHTTTCCEEE
T ss_pred C---HHHHHHHHHHcCCEEEE
Confidence 3 23677789999999987
No 291
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=29.05 E-value=1.3e+02 Score=28.08 Aligned_cols=80 Identities=13% Similarity=0.229 Sum_probs=47.9
Q ss_pred EEEeecCcHHHHHHHHHHHHcC-CeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEech-----------HHHHHh----
Q 006577 457 VLLTYGSSSAVEMILQHAHELG-KQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN-----------AISYII---- 520 (640)
Q Consensus 457 vILT~g~SstV~~vL~~A~e~G-k~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds-----------Av~~iM---- 520 (640)
+|.||.....+...|....++. ..++|||+|....-+-..+++++.+ .-.++++.-. ..+..+
T Consensus 6 iIp~yn~~~~l~~~l~Sl~~q~~~~~eiivvDd~S~d~t~~~~~~~~~-~~~i~~i~~~~~~~~~~~~n~G~~~a~N~gi 84 (255)
T 1qg8_A 6 IMTSYNKSDYVAKSISSILSQTFSDFELFIMDDNSNEETLNVIRPFLN-DNRVRFYQSDISGVKERTEKTRYAALINQAI 84 (255)
T ss_dssp EEEESSCTTTHHHHHHHHHTCSCCCEEEEEEECSCCHHHHHHHGGGGG-STTEEEEECCCCSHHHHHSSCHHHHHHHHHH
T ss_pred EEEcCCCHHHHHHHHHHHHhccCCceEEEEEECCCCchHHHHHHHHhh-cCCEEEEecccccccccccccCHHHHHHHHH
Confidence 4566766777788888776653 4688888876655554555555544 4556666532 333332
Q ss_pred h--hcc-EEEEcceeEecCC
Q 006577 521 H--EVT-RVFLGASSVLSNG 537 (640)
Q Consensus 521 ~--~Vd-kVlvGADaIlaNG 537 (640)
+ +.+ .+++-+|.++..+
T Consensus 85 ~~a~g~~i~~lD~Dd~~~~~ 104 (255)
T 1qg8_A 85 EMAEGEYITYATDDNIYMPD 104 (255)
T ss_dssp HHCCCSEEEEEETTEEECTT
T ss_pred HHcCCCEEEEeCCCCccChH
Confidence 2 233 4567777777554
No 292
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus}
Probab=29.02 E-value=1.2e+02 Score=29.15 Aligned_cols=21 Identities=29% Similarity=0.252 Sum_probs=13.8
Q ss_pred HHHHHHHHHcCCeeEEEEcCC
Q 006577 468 EMILQHAHELGKQFRVVIVDS 488 (640)
Q Consensus 468 ~~vL~~A~e~Gk~f~ViV~ES 488 (640)
..+++.+.+.|-..+|++.++
T Consensus 18 ~~l~~~L~~~g~~V~vv~T~~ 38 (189)
T 2ejb_A 18 IKLLQVLEELDFSVDLVISRN 38 (189)
T ss_dssp HHHHHHHHHTTCEEEEEECHH
T ss_pred HHHHHHHHHCCCEEEEEEChh
Confidence 445666666677777777765
No 293
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*
Probab=28.91 E-value=2.3e+02 Score=28.74 Aligned_cols=98 Identities=15% Similarity=0.081 Sum_probs=52.2
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHH-HHHH-HhCCCceEEEechH---HHHHhh-hccEEEEc
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLL-LRRL-VRKGLSCTYTHINA---ISYIIH-EVTRVFLG 529 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~L-a~eL-~~~GI~vTlI~DsA---v~~iM~-~VdkVlvG 529 (640)
+.|++-+-+..+..+|..+.+.| -+|++. .|.+.|... ...+ ...|+.+.++...- +-..+. ++..|++.
T Consensus 82 ~~i~~~sG~~a~~~~l~~~~~~g--d~vl~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~i~~~~~~v~~~ 157 (398)
T 1gc0_A 82 AGLALASGMGAITSTLWTLLRPG--DEVLLG--NTLYGCTFAFLHHGIGEFGVKLRHVDMADLQALEAAMTPATRVIYFE 157 (398)
T ss_dssp EEEEESSHHHHHHHHHHHHCCTT--CEEEEE--SSCCSHHHHHHHHTGGGGTCEEEEECTTCHHHHHHHCCTTEEEEEEE
T ss_pred cEEEECCHHHHHHHHHHHHhcCC--CEEEEe--CCCchhHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCCCCeEEEEE
Confidence 45555444555555555543333 355554 355555433 3333 56799988886322 222333 34444442
Q ss_pred ceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 530 ADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
..--..|.+.. --.|+-+|++|++.++|
T Consensus 158 -~~~nptG~~~~---l~~i~~l~~~~~~~li~ 185 (398)
T 1gc0_A 158 -SPANPNMHMAD---IAGVAKIARKHGATVVV 185 (398)
T ss_dssp -SSCTTTCCCCC---HHHHHHHHGGGTCEEEE
T ss_pred -CCCCCCccccc---HHHHHHHHHHcCCEEEE
Confidence 11122355542 35677789999998876
No 294
>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A
Probab=28.78 E-value=1.8e+02 Score=28.32 Aligned_cols=110 Identities=17% Similarity=0.082 Sum_probs=60.5
Q ss_pred cCCCEEEeecCcHHHHH-HHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHh-CCCceEEE--ec----hHHHHHhhhcc
Q 006577 453 RDGDVLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVR-KGLSCTYT--HI----NAISYIIHEVT 524 (640)
Q Consensus 453 ~dgdvILT~g~SstV~~-vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~-~GI~vTlI--~D----sAv~~iM~~Vd 524 (640)
..|.+||..|-++.+-. +++.+.++| .+|+++.-.+ .....+...+.. .+-.++++ .| ..+..++.++|
T Consensus 9 ~~~~~vlVTGatG~iG~~l~~~L~~~g--~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d 85 (342)
T 1y1p_A 9 PEGSLVLVTGANGFVASHVVEQLLEHG--YKVRGTARSA-SKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAA 85 (342)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESSH-HHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCS
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHCC--CEEEEEeCCc-ccHHHHHHHhhccCCCceEEEEecCCcChHHHHHHHcCCC
Confidence 45678999998877644 445555666 5677665332 122233333322 23345544 33 23444556778
Q ss_pred EEEEcceeEecCCC-----eecccchHHHHHHHh-hCCCcEEEeccc
Q 006577 525 RVFLGASSVLSNGT-----VCSRVGTACVAMVAY-GFHIPVLVCCEA 565 (640)
Q Consensus 525 kVlvGADaIlaNG~-----VvNKiGT~~lAlaAk-~~~VPVyV~aet 565 (640)
.||--|-....+.+ -.|-.||..+.-+|+ ..++.-+|.+.+
T Consensus 86 ~vih~A~~~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~iv~~SS 132 (342)
T 1y1p_A 86 GVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSS 132 (342)
T ss_dssp EEEECCCCCSCCSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECC
T ss_pred EEEEeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecc
Confidence 77766532211111 136789999998887 466665554444
No 295
>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*
Probab=28.74 E-value=2e+02 Score=28.51 Aligned_cols=100 Identities=18% Similarity=0.264 Sum_probs=51.2
Q ss_pred CCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEech--------HHHHHhh----h
Q 006577 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN--------AISYIIH----E 522 (640)
Q Consensus 455 gdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds--------Av~~iM~----~ 522 (640)
..+++|.|-+..+..++..+.+.| -+|++.+ |.+.|.. ..+...|+.+..+... .+..+-+ +
T Consensus 79 ~~v~~~~g~~~a~~~~~~~~~~~g--d~Vl~~~--~~~~~~~--~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~ 152 (381)
T 1v2d_A 79 ESVVVTSGATEALYVLLQSLVGPG--DEVVVLE--PFFDVYL--PDAFLAGAKARLVRLDLTPEGFRLDLSALEKALTPR 152 (381)
T ss_dssp GGEEEESSHHHHHHHHHHHHCCTT--CEEEEEE--SCCTTHH--HHHHHTTCEEEEEECEEETTEEECCHHHHHTTCCTT
T ss_pred hhEEEcCChHHHHHHHHHHhCCCC--CEEEEcC--CCchhHH--HHHHHcCCEEEEEeCCCCCccCCcCHHHHHHhcCcC
Confidence 357777776777776666664333 3455553 4444433 2344568777766532 1222222 2
Q ss_pred ccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 523 VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 523 VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
+..|++- ..-...|.++..-=-..++-+|+.|++.+++
T Consensus 153 ~~~v~~~-~~~nptG~~~~~~~l~~i~~~~~~~~~~li~ 190 (381)
T 1v2d_A 153 TRALLLN-TPMNPTGLVFGERELEAIARLARAHDLFLIS 190 (381)
T ss_dssp EEEEEEE-SSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred CEEEEEC-CCCCCCCCccCHHHHHHHHHHHHHcCCEEEE
Confidence 3344332 1111224333221124566688999998876
No 296
>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*
Probab=28.73 E-value=80 Score=30.39 Aligned_cols=98 Identities=12% Similarity=0.126 Sum_probs=58.1
Q ss_pred CCEEEeecCcHHHHHHH-HHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEe-----chHHHHHhhhccEEEE
Q 006577 455 GDVLLTYGSSSAVEMIL-QHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-----INAISYIIHEVTRVFL 528 (640)
Q Consensus 455 gdvILT~g~SstV~~vL-~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~-----DsAv~~iM~~VdkVlv 528 (640)
+.+||..|-++.+=..| +.+.++| .+|++++-.+...- +-.+.++. ...+..++.++|.||-
T Consensus 3 ~k~vlVTGasg~IG~~la~~L~~~G--~~V~~~~r~~~~~~----------~~~~~~~~~Dl~d~~~~~~~~~~~D~vi~ 70 (267)
T 3rft_A 3 MKRLLVTGAAGQLGRVMRERLAPMA--EILRLADLSPLDPA----------GPNEECVQCDLADANAVNAMVAGCDGIVH 70 (267)
T ss_dssp EEEEEEESTTSHHHHHHHHHTGGGE--EEEEEEESSCCCCC----------CTTEEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcC--CEEEEEecCCcccc----------CCCCEEEEcCCCCHHHHHHHHcCCCEEEE
Confidence 34678878777665444 4444444 67777765543211 22333322 2456667777887776
Q ss_pred cceeEecCCC-----eecccchHHHHHHHhhCCCcEEEeccc
Q 006577 529 GASSVLSNGT-----VCSRVGTACVAMVAYGFHIPVLVCCEA 565 (640)
Q Consensus 529 GADaIlaNG~-----VvNKiGT~~lAlaAk~~~VPVyV~aet 565 (640)
-|-. ..... -+|-.||+.+.-+|+.+++.-+|...+
T Consensus 71 ~Ag~-~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iv~~SS 111 (267)
T 3rft_A 71 LGGI-SVEKPFEQILQGNIIGLYNLYEAARAHGQPRIVFASS 111 (267)
T ss_dssp CCSC-CSCCCHHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCCC-cCcCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 5532 12221 258899999999999999866655443
No 297
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4
Probab=28.71 E-value=3.8e+02 Score=26.61 Aligned_cols=96 Identities=9% Similarity=0.017 Sum_probs=51.0
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEe--c-hHHHHHhh-------hccE
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH--I-NAISYIIH-------EVTR 525 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~--D-sAv~~iM~-------~Vdk 525 (640)
+.|++-+-|..+..+++.+.+.| -.|++. .|.+.+ +...+...|+++..+. | ..+-..+. ++..
T Consensus 107 ~~i~~~sGs~a~~~~~~~~~~~g--d~v~~~--~~~~~~--~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~ 180 (401)
T 1fc4_A 107 DAILYSSCFDANGGLFETLLGAE--DAIISD--ALNHAS--IIDGVRLCKAKRYRYANNDMQELEARLKEAREAGARHVL 180 (401)
T ss_dssp EEEEESCHHHHHHTTHHHHCCTT--CEEEEE--TTCCHH--HHHHHHTSCSEEEEECTTCHHHHHHHHHHHHHTTCSSEE
T ss_pred cEEEeCChHHHHHHHHHHHcCCC--CEEEEc--chhHHH--HHHHHHHcCCceEEECCCCHHHHHHHHHHhhccCCCceE
Confidence 45555333444444444443333 345543 344433 2234566798888775 2 23333444 3444
Q ss_pred EEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 526 VFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 526 VlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
|++ ...--..|.+.. --.|+-+|+.|++.+++
T Consensus 181 v~~-~~~~nptG~~~~---~~~i~~l~~~~~~~li~ 212 (401)
T 1fc4_A 181 IAT-DGVFSMDGVIAN---LKGVCDLADKYDALVMV 212 (401)
T ss_dssp EEE-ESEETTTTEECC---HHHHHHHHHHTTEEEEE
T ss_pred EEE-eCCcCCCCCCCC---HHHHHHHHHHcCCEEEE
Confidence 544 333344565555 46677789999987766
No 298
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=28.63 E-value=1.1e+02 Score=26.05 Aligned_cols=80 Identities=14% Similarity=0.071 Sum_probs=45.4
Q ss_pred CeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHH-Hhh--hccEEEEcceeEecCCCeecccchHHHHHHHh-h
Q 006577 479 KQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISY-IIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAY-G 554 (640)
Q Consensus 479 k~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~-iM~--~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk-~ 554 (640)
...+|+|+|..+.. ...+...|.+.|+.|....+..-+. .+. ..|.||+..+- .++ -|.-.+..+-+ .
T Consensus 13 ~~~~ILivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~D~~l--~~~-----~g~~~~~~l~~~~ 84 (153)
T 3hv2_A 13 RRPEILLVDSQEVI-LQRLQQLLSPLPYTLHFARDATQALQLLASREVDLVISAAHL--PQM-----DGPTLLARIHQQY 84 (153)
T ss_dssp SCCEEEEECSCHHH-HHHHHHHHTTSSCEEEEESSHHHHHHHHHHSCCSEEEEESCC--SSS-----CHHHHHHHHHHHC
T ss_pred CCceEEEECCCHHH-HHHHHHHhcccCcEEEEECCHHHHHHHHHcCCCCEEEEeCCC--CcC-----cHHHHHHHHHhHC
Confidence 45677777776643 2334566777787777655433222 222 57888886542 222 23333433333 3
Q ss_pred CCCcEEEecccc
Q 006577 555 FHIPVLVCCEAY 566 (640)
Q Consensus 555 ~~VPVyV~aety 566 (640)
.++|+++++...
T Consensus 85 ~~~~ii~~s~~~ 96 (153)
T 3hv2_A 85 PSTTRILLTGDP 96 (153)
T ss_dssp TTSEEEEECCCC
T ss_pred CCCeEEEEECCC
Confidence 579999987653
No 299
>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}
Probab=28.57 E-value=1.2e+02 Score=30.05 Aligned_cols=95 Identities=13% Similarity=0.139 Sum_probs=50.1
Q ss_pred hccCCCEEEeecCcHHHHHHHHHH-HHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEech--------HHHHHhh
Q 006577 451 KIRDGDVLLTYGSSSAVEMILQHA-HELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN--------AISYIIH 521 (640)
Q Consensus 451 ~I~dgdvILT~g~SstV~~vL~~A-~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds--------Av~~iM~ 521 (640)
++...+.|+|-+-+..+..+|..+ .+.| -+|++. .|.+.+.. ..+...|+.+.++... .+-..+.
T Consensus 50 ~~~~~~~~~~~~gt~a~~~~~~~~~~~~g--d~v~~~--~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~d~~~l~~~~~ 123 (374)
T 3uwc_A 50 LHNAPHAIGVGTGTDALAMSFKMLNIGAG--DEVITC--ANTFIASV--GAIVQAGATPVLVDSENGYVIDPEKIEAAIT 123 (374)
T ss_dssp HTTCSEEEEESCHHHHHHHHHHHTTCCTT--CEEEEE--SSSCHHHH--HHHHHTTCEEEEECBCTTSSBCGGGTGGGCC
T ss_pred HhCCCcEEEeCCHHHHHHHHHHHcCCCCC--CEEEEC--CCccHHHH--HHHHHcCCEEEEEecCCCCCcCHHHHHHhCC
Confidence 333335666655555555555544 3333 355554 44555543 3355678888877632 1111122
Q ss_pred hccEEEEcceeEecCCCeecccch----HHHHHHHhhCCCcEEE
Q 006577 522 EVTRVFLGASSVLSNGTVCSRVGT----ACVAMVAYGFHIPVLV 561 (640)
Q Consensus 522 ~VdkVlvGADaIlaNG~VvNKiGT----~~lAlaAk~~~VPVyV 561 (640)
+=.++|+ +.|-.|+ -.|+-+|+.|++.+++
T Consensus 124 ~~~~~v~----------~~n~~G~~~~~~~i~~~~~~~~~~li~ 157 (374)
T 3uwc_A 124 DKTKAIM----------PVHYTGNIADMPALAKIAKKHNLHIVE 157 (374)
T ss_dssp TTEEEEC----------CBCGGGCCCCHHHHHHHHHHTTCEEEE
T ss_pred CCceEEE----------EeCCcCCcCCHHHHHHHHHHcCCEEEE
Confidence 2123333 2233443 4577789999998887
No 300
>3r8n_K 30S ribosomal protein S11; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_K 3fih_K* 3iy8_K 3j18_K* 2wwl_K 3oar_K 3oaq_K 3ofb_K 3ofa_K 3ofp_K 3ofx_K 3ofy_K 3ofo_K 3r8o_K 4a2i_K 4gd1_K 4gd2_K 3i1m_K 1vs7_K* 3e1a_C ...
Probab=28.57 E-value=46 Score=29.94 Aligned_cols=45 Identities=22% Similarity=0.235 Sum_probs=32.5
Q ss_pred HHHHHHHHHHcC-CeeEEEEcCCCCCchHHHHH-HHHHhCCCceEEEech
Q 006577 467 VEMILQHAHELG-KQFRVVIVDSRPKHEGKLLL-RRLVRKGLSCTYTHIN 514 (640)
Q Consensus 467 V~~vL~~A~e~G-k~f~ViV~ESRP~~eG~~La-~eL~~~GI~vTlI~Ds 514 (640)
.+.+...|.+.| +.++|+|--- ..|++.+ +.|...|+.++.|.|.
T Consensus 55 a~~~~~~~~~~Gi~~v~v~vkG~---G~Gr~~airaL~~~Gl~I~~I~Dv 101 (117)
T 3r8n_K 55 AERCADAVKEYGIKNLEVMVKGP---GPGRESTIRALNAAGFRITNITDV 101 (117)
T ss_dssp HHHHHHHHTTSCCCEEEEEEECS---SSSTTHHHHHHHHTTCEEEEEEEC
T ss_pred HHHHHHHHHHhCCcEEEEEEeCC---CccHHHHHHHHHhCCCEEEEEEEe
Confidence 456677777777 4567777432 4456665 8999999999999984
No 301
>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein, rossmann- like fold, APO-form, extended loop region; HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A* 3g6k_A*
Probab=28.55 E-value=5.1e+02 Score=26.80 Aligned_cols=111 Identities=11% Similarity=0.163 Sum_probs=57.2
Q ss_pred ccccHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--CCEEEeecCc--H-HH
Q 006577 394 LSVSMGNAIRFLKSQIAKIP-ISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRD--GDVLLTYGSS--S-AV 467 (640)
Q Consensus 394 tsvsm~NAIr~lk~~I~~l~-~~~~~~eaK~~L~e~Id~fi~E~i~~A~~~Ia~~a~~~I~d--gdvILT~g~S--s-tV 467 (640)
|+++|..+...+.+.+.... ...+.+...+.+++.|+ .+.+.|.+.+++.... +..+|.|+.. + ++
T Consensus 3 ~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~q~qir--------~S~~~iLrea~~~f~~~~~~ialSfSGGKDStVL 74 (308)
T 3fwk_A 3 MVMRLGDAAELCYNLTSSYLQIAAESDSIIAQTQRAIN--------TTKSILINETFPKWSPLNGEISFSYNGGKDCQVL 74 (308)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTCCCCTTSHHHHHHHHHH--------HHHHHHHHHTTTTSCSSSSSEEEECCSSHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHHcccCChHHHHHHHHHHHH--------HHHHHHHHHHHHHcccccCCEEEEecCChhHHHH
Confidence 34567777776666655422 11122223334444433 2233355556655554 5666766543 3 44
Q ss_pred HHHHHHHHHc-------------------CCeeEEEEcCCCCCc-hHHHHHHHHHh-CCCceEEEe
Q 006577 468 EMILQHAHEL-------------------GKQFRVVIVDSRPKH-EGKLLLRRLVR-KGLSCTYTH 512 (640)
Q Consensus 468 ~~vL~~A~e~-------------------Gk~f~ViV~ESRP~~-eG~~La~eL~~-~GI~vTlI~ 512 (640)
+.++..+... ...|.|+-+||.=.+ |=.++..++.+ .|+++.++.
T Consensus 75 LhL~~kal~~~~~~~~~~~~~~~~~~~~p~~~ipvifiDTG~~FpET~ef~d~~~~~ygL~L~v~~ 140 (308)
T 3fwk_A 75 LLLYLSCLWEYYIVKLSQSQFDGKFHRFPLTKLPTVFIDHDDTFKTLENFIEETSLRYSLSLYESD 140 (308)
T ss_dssp HHHHHHHHHHHHTCCE-----------------EEEECCCTTCCHHHHHHHHHHHHHTTEEEEECC
T ss_pred HHHHHHHhhhhcccccccccccccccccCCCCccEEEEeCCCCCHHHHHHHHHHHHHhCCcEEEeC
Confidence 5566565310 147899999886555 55566656554 588776643
No 302
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1
Probab=28.55 E-value=3.1e+02 Score=27.98 Aligned_cols=115 Identities=18% Similarity=0.235 Sum_probs=59.6
Q ss_pred HHHhccC-CCEEEee-cCcHHHHHHH---HHHHH-c-C-CeeEEEEc-CCC---CCch-HHHHHHHHHhCCCceE-EEec
Q 006577 448 AVTKIRD-GDVLLTY-GSSSAVEMIL---QHAHE-L-G-KQFRVVIV-DSR---PKHE-GKLLLRRLVRKGLSCT-YTHI 513 (640)
Q Consensus 448 a~~~I~d-gdvILT~-g~SstV~~vL---~~A~e-~-G-k~f~ViV~-ESR---P~~e-G~~La~eL~~~GI~vT-lI~D 513 (640)
..++|.. +-++|-- +-..+++..+ +-|+| . | .-+++.|. |.+ |... =.+.+++|.+.|+.+- |+.|
T Consensus 65 ~~~~i~~~~~~~lpNTag~~ta~eAv~~a~lare~~~~~~~iKlEv~~d~~~llpD~~~tv~aa~~L~~~Gf~Vlpy~~d 144 (265)
T 1wv2_A 65 LLDVIPPDRYTILPNTAGCYDAVEAVRTCRLARELLDGHNLVKLEVLADQKTLFPNVVETLKAAEQLVKDGFDVMVYTSD 144 (265)
T ss_dssp -----CTTTSEEEEECTTCCSHHHHHHHHHHHHTTTTSCCEEEECCBSCTTTCCBCHHHHHHHHHHHHTTTCEEEEEECS
T ss_pred HHhhhhhcCCEECCcCCCCCCHHHHHHHHHHHHHHcCCCCeEEEEeecCccccCcCHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3456654 5677742 1223344433 33445 2 2 34677777 444 3323 3445699999999998 6776
Q ss_pred h-HHHHHhh--hccEEEE-cceeEecCCCeecccchHHHHHHHhhCCCcEEEecccc
Q 006577 514 N-AISYIIH--EVTRVFL-GASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAY 566 (640)
Q Consensus 514 s-Av~~iM~--~VdkVlv-GADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~aety 566 (640)
+ ..+..+. .++.|+- |+. |-.+=++.| -..|-.+.+..++||++-+.-.
T Consensus 145 d~~~akrl~~~G~~aVmPlg~p-IGsG~Gi~~---~~lI~~I~e~~~vPVI~eGGI~ 197 (265)
T 1wv2_A 145 DPIIARQLAEIGCIAVMPLAGL-IGSGLGICN---PYNLRIILEEAKVPVLVDAGVG 197 (265)
T ss_dssp CHHHHHHHHHSCCSEEEECSSS-TTCCCCCSC---HHHHHHHHHHCSSCBEEESCCC
T ss_pred CHHHHHHHHHhCCCEEEeCCcc-CCCCCCcCC---HHHHHHHHhcCCCCEEEeCCCC
Confidence 5 3445554 3455544 321 111101222 3466777778899999855443
No 303
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=28.52 E-value=1.5e+02 Score=28.67 Aligned_cols=71 Identities=17% Similarity=0.203 Sum_probs=41.0
Q ss_pred EEEeecCcHHHHHHHHHHHHcCCeeEEEEcCC-CCCchHHHHHHHHHhCCCceEEEec----------hHHHHHhh--hc
Q 006577 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDS-RPKHEGKLLLRRLVRKGLSCTYTHI----------NAISYIIH--EV 523 (640)
Q Consensus 457 vILT~g~SstV~~vL~~A~e~Gk~f~ViV~ES-RP~~eG~~La~eL~~~GI~vTlI~D----------sAv~~iM~--~V 523 (640)
.||..|..+....+|...++....+.|.++=| +|...+.+ ...+.||++.++.. ..+...++ ++
T Consensus 7 ~vl~sG~g~~~~~~l~~l~~~~l~~~I~~Vit~~~~~~v~~---~A~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 83 (212)
T 3av3_A 7 AVFASGSGTNFQAIVDAAKRGDLPARVALLVCDRPGAKVIE---RAARENVPAFVFSPKDYPSKAAFESEILRELKGRQI 83 (212)
T ss_dssp EEECCSSCHHHHHHHHHHHTTCCCEEEEEEEESSTTCHHHH---HHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHHTTC
T ss_pred EEEEECCcHHHHHHHHHHHhCCCCCeEEEEEeCCCCcHHHH---HHHHcCCCEEEeCcccccchhhhHHHHHHHHHhcCC
Confidence 46777777777777766654322455433323 35544443 34567999987653 23334444 57
Q ss_pred cEEEEcc
Q 006577 524 TRVFLGA 530 (640)
Q Consensus 524 dkVlvGA 530 (640)
|.+++.+
T Consensus 84 Dliv~a~ 90 (212)
T 3av3_A 84 DWIALAG 90 (212)
T ss_dssp CEEEESS
T ss_pred CEEEEch
Confidence 8777655
No 304
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=28.47 E-value=1.9e+02 Score=23.37 Aligned_cols=78 Identities=14% Similarity=0.152 Sum_probs=44.1
Q ss_pred eEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHH-hh--hccEEEEcceeEecCCCeecccchHHHHHHHhh---
Q 006577 481 FRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYI-IH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYG--- 554 (640)
Q Consensus 481 f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~i-M~--~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~--- 554 (640)
.+|.|+|..+.. ...+...|...|+.+....+..-+.- +. ..|.||+..+ +.++ -|.-.+..+-+.
T Consensus 3 ~~ilivdd~~~~-~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~dlvi~D~~--l~~~-----~g~~~~~~l~~~~~~ 74 (127)
T 2jba_A 3 RRILVVEDEAPI-REMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLAWM--LPGG-----SGIQFIKHLRRESMT 74 (127)
T ss_dssp CEEEEECSCHHH-HHHHHHHHHHTTCEEEEECSHHHHHTTCSSSCCSEEEEESE--ETTE-----EHHHHHHHHHTSTTT
T ss_pred cEEEEEcCCHHH-HHHHHHHHHHCCceEEEeCCHHHHHHHHhccCCCEEEEecC--CCCC-----CHHHHHHHHHhCccc
Confidence 367777777643 23345667778888775554332221 22 4788887543 3332 244444444433
Q ss_pred CCCcEEEecccc
Q 006577 555 FHIPVLVCCEAY 566 (640)
Q Consensus 555 ~~VPVyV~aety 566 (640)
.++|+++++...
T Consensus 75 ~~~~ii~~s~~~ 86 (127)
T 2jba_A 75 RDIPVVMLTARG 86 (127)
T ss_dssp TTSCEEEEEETT
T ss_pred CCCCEEEEeCCC
Confidence 479999986653
No 305
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}
Probab=28.27 E-value=1.6e+02 Score=30.38 Aligned_cols=100 Identities=16% Similarity=0.237 Sum_probs=51.9
Q ss_pred CCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEech-----------------HHH
Q 006577 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN-----------------AIS 517 (640)
Q Consensus 455 gdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds-----------------Av~ 517 (640)
..+++|-|-+..+..+++.+.+.| -+|++.+ |.+.+... .+...|..+..+... -+.
T Consensus 119 ~~v~~t~G~~~al~~~~~~l~~~g--d~Vlv~~--p~y~~~~~--~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~d~~ 192 (447)
T 3b46_A 119 ENVTVTTGANEGILSCLMGLLNAG--DEVIVFE--PFFDQYIP--NIELCGGKVVYVPINPPKELDQRNTRGEEWTIDFE 192 (447)
T ss_dssp GGEEEESHHHHHHHHHHHHHCCTT--CEEEEEE--SCCTTHHH--HHHHTTCEEEEEEEECCGGGGTSCBCSTTSEECHH
T ss_pred hhEEEeCCHHHHHHHHHHHHcCCC--CEEEEeC--CCchhHHH--HHHHcCCEEEEEeCCCccccccccccccCcccCHH
Confidence 357777776777776766664444 3566655 66665433 334467766655411 111
Q ss_pred HH---hh-hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 518 YI---IH-EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 518 ~i---M~-~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
.+ +. ++..|++- .---..|.++.+-=-..|+-+|+.|++.+++
T Consensus 193 ~l~~~l~~~~~~v~l~-~p~nptG~~~~~~~l~~i~~l~~~~~~~li~ 239 (447)
T 3b46_A 193 QFEKAITSKTKAVIIN-TPHNPIGKVFTREELTTLGNICVKHNVVIIS 239 (447)
T ss_dssp HHHTTCCTTEEEEEEE-SSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHhhccCCeEEEEe-CCCCCCCcccCHHHHHHHHHHHHHcCcEEEE
Confidence 22 21 33334331 1111234444332233466688999998776
No 306
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0
Probab=28.26 E-value=1.5e+02 Score=29.19 Aligned_cols=97 Identities=11% Similarity=0.165 Sum_probs=50.1
Q ss_pred CCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEech--------HHHHHhh-hccE
Q 006577 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN--------AISYIIH-EVTR 525 (640)
Q Consensus 455 gdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds--------Av~~iM~-~Vdk 525 (640)
..+++|-|.+..+..++....+.|. +|++.+ |.+.+. ...+...|+.+..+... .+-..+. +...
T Consensus 85 ~~v~~~~g~t~a~~~~~~~~~~~gd--~vl~~~--~~~~~~--~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~ 158 (363)
T 3ffh_A 85 EELIFTAGVDELIELLTRVLLDTTT--NTVMAT--PTFVQY--RQNALIEGAEVREIPLLQDGEHDLEGMLNAIDEKTTI 158 (363)
T ss_dssp GGEEEESSHHHHHHHHHHHHCSTTC--EEEEEE--SSCHHH--HHHHHHHTCEEEEEECCTTSCCCHHHHHHHCCTTEEE
T ss_pred hhEEEeCCHHHHHHHHHHHHccCCC--EEEEcC--CChHHH--HHHHHHcCCEEEEecCCCCCCcCHHHHHHhcccCCCE
Confidence 4567776666666666655544443 566554 555553 33444568887777633 2222332 4445
Q ss_pred EEEcceeEecCCCeecccchHHHHHHHhhC--CCcEEE
Q 006577 526 VFLGASSVLSNGTVCSRVGTACVAMVAYGF--HIPVLV 561 (640)
Q Consensus 526 VlvGADaIlaNG~VvNKiGT~~lAlaAk~~--~VPVyV 561 (640)
|++ ...-...|.++..- .+.-+++.+ ++.+++
T Consensus 159 v~~-~~p~nptG~~~~~~---~l~~l~~~~~~~~~li~ 192 (363)
T 3ffh_A 159 VWI-CNPNNPTGNYIELA---DIQAFLDRVPSDVLVVL 192 (363)
T ss_dssp EEE-ESSCTTTCCCCCHH---HHHHHHTTSCTTSEEEE
T ss_pred EEE-eCCCCCcCCCcCHH---HHHHHHHhCCCCcEEEE
Confidence 554 22222334433322 345555555 777766
No 307
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=28.23 E-value=3.6e+02 Score=25.91 Aligned_cols=61 Identities=15% Similarity=0.085 Sum_probs=35.7
Q ss_pred HHHhCCCc---eEEEechHHHHHhh-----hccEEEEcceeEecCCCeec-ccchHHHHHHHhhCCCcEEEecc
Q 006577 500 RLVRKGLS---CTYTHINAISYIIH-----EVTRVFLGASSVLSNGTVCS-RVGTACVAMVAYGFHIPVLVCCE 564 (640)
Q Consensus 500 eL~~~GI~---vTlI~DsAv~~iM~-----~VdkVlvGADaIlaNG~VvN-KiGT~~lAlaAk~~~VPVyV~ae 564 (640)
.+.+.|++ +.+...+..-.+.. ++|++++|+..- |.+-. -.|+..-.+ .++-.+||+|+=+
T Consensus 207 ~~~~~g~~~~~~~v~~g~~~~~I~~~a~~~~~dLiVmG~~g~---~~~~~~~~Gsv~~~v-l~~~~~pVLvv~~ 276 (290)
T 3mt0_A 207 FQAEYGFSDEQLHIEEGPADVLIPRTAQKLDAVVTVIGTVAR---TGLSGALIGNTAEVV-LDTLESDVLVLKP 276 (290)
T ss_dssp HHHHHTCCTTTEEEEESCHHHHHHHHHHHHTCSEEEEECCSS---CCGGGCCSCHHHHHH-HTTCSSEEEEECC
T ss_pred HHHHcCCCcceEEEeccCHHHHHHHHHHhcCCCEEEECCCCC---cCCcceecchHHHHH-HhcCCCCEEEECC
Confidence 34445773 34444444444443 499999999752 22222 256654444 5667899999843
No 308
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=28.02 E-value=3.3e+02 Score=24.45 Aligned_cols=90 Identities=14% Similarity=0.104 Sum_probs=54.2
Q ss_pred HHHHHHhccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEe-chH-HHHHh--
Q 006577 445 VKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-INA-ISYII-- 520 (640)
Q Consensus 445 a~~a~~~I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~-DsA-v~~iM-- 520 (640)
.+.++++|.+...|..+|..+.-.. +..+...|...|++|.++. |.. ....+
T Consensus 29 l~~~~~~i~~a~~I~i~G~G~S~~~------------------------a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 84 (187)
T 3sho_A 29 IEAAVEAICRADHVIVVGMGFSAAV------------------------AVFLGHGLNSLGIRTTVLTEGGSTLTITLAN 84 (187)
T ss_dssp HHHHHHHHHHCSEEEEECCGGGHHH------------------------HHHHHHHHHHTTCCEEEECCCTHHHHHHHHT
T ss_pred HHHHHHHHHhCCEEEEEecCchHHH------------------------HHHHHHHHHhcCCCEEEecCCchhHHHHHhc
Confidence 3445556666678888876544211 1123456667888888888 332 22222
Q ss_pred -hhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEeccc
Q 006577 521 -HEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEA 565 (640)
Q Consensus 521 -~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~aet 565 (640)
.+=|.||+ |...|. ..-+..++-.||..|+++++++..
T Consensus 85 ~~~~d~~i~----iS~sG~---t~~~~~~~~~ak~~g~~vi~IT~~ 123 (187)
T 3sho_A 85 LRPTDLMIG----VSVWRY---LRDTVAALAGAAERGVPTMALTDS 123 (187)
T ss_dssp CCTTEEEEE----ECCSSC---CHHHHHHHHHHHHTTCCEEEEESC
T ss_pred CCCCCEEEE----EeCCCC---CHHHHHHHHHHHHCCCCEEEEeCC
Confidence 24455543 334553 244677788999999999998764
No 309
>2cwd_A Low molecular weight phosphotyrosine protein PHOS; tyrosine phosphatase, structural genomics; 1.90A {Thermus thermophilus}
Probab=27.67 E-value=58 Score=30.13 Aligned_cols=74 Identities=16% Similarity=0.130 Sum_probs=50.5
Q ss_pred EEEee-----cCcHHHHHHHHHHHH-cC--CeeEEEEcCCCCCchHH----HHHHHHHhCCCceEEEechHH-HHHhhhc
Q 006577 457 VLLTY-----GSSSAVEMILQHAHE-LG--KQFRVVIVDSRPKHEGK----LLLRRLVRKGLSCTYTHINAI-SYIIHEV 523 (640)
Q Consensus 457 vILT~-----g~SstV~~vL~~A~e-~G--k~f~ViV~ESRP~~eG~----~La~eL~~~GI~vTlI~DsAv-~~iM~~V 523 (640)
.||.. |+|...+.+|++... .| ..|.|.-.-+.|+..|. +....|.+.||++. ..-..+ ...+...
T Consensus 6 ~VLFVC~gN~cRSpmAEal~~~~~~~~gl~~~~~v~SAGt~~~~~g~~~~p~a~~~l~e~Gid~s-~~ar~l~~~~~~~~ 84 (161)
T 2cwd_A 6 RVLFVCLGNICRSPMAEGIFRKLLKERGLEDRFEVDSAGTGAWHVGEPMDPRARRVLEEEGAYFP-HVARRLTREDVLAY 84 (161)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHHTCTTTEEEEEEESSCTTTTCCCCHHHHHHHHHHTCCCC-CCCCBCCHHHHHHC
T ss_pred EEEEECCCcHHHHHHHHHHHHHHHHHcCCCCcEEEEecccCCCccCCCCCHHHHHHHHHcCcCcc-ccccCCCHhHhccC
Confidence 45554 567789999988654 45 36899999999977663 44588999999986 322222 2445678
Q ss_pred cEEEEcce
Q 006577 524 TRVFLGAS 531 (640)
Q Consensus 524 dkVlvGAD 531 (640)
|.||.=.+
T Consensus 85 DlIi~M~~ 92 (161)
T 2cwd_A 85 DHILVMDR 92 (161)
T ss_dssp SEEEESSH
T ss_pred CEEEECCh
Confidence 98876543
No 310
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=27.52 E-value=2.2e+02 Score=23.37 Aligned_cols=78 Identities=13% Similarity=0.195 Sum_probs=42.8
Q ss_pred eeEEEEcCCCCCchHHHHHHHHHhCCCc-eEEEechHHH--HHhh--hccEEEEcceeEecCCCeecccchHHHHHHHhh
Q 006577 480 QFRVVIVDSRPKHEGKLLLRRLVRKGLS-CTYTHINAIS--YIIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYG 554 (640)
Q Consensus 480 ~f~ViV~ESRP~~eG~~La~eL~~~GI~-vTlI~DsAv~--~iM~--~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~ 554 (640)
.++|+++|..+.. ...+...|.+.|.. +....+..-+ .+-. ..|.||+..+ +.++ -|.-.+..+-+.
T Consensus 5 ~~~iLivdd~~~~-~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~~~~dlvi~D~~--~p~~-----~g~~~~~~lr~~ 76 (129)
T 3h1g_A 5 SMKLLVVDDSSTM-RRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWN--MPEM-----NGLDLVKKVRSD 76 (129)
T ss_dssp -CCEEEECSCHHH-HHHHHHHHHHTTCCCEEEESSHHHHHHHHHHCTTCCEEEECSC--CSSS-----CHHHHHHHHHTS
T ss_pred CcEEEEEeCCHHH-HHHHHHHHHHcCCcEEEEeCCHHHHHHHHHhCCCCCEEEEeCC--CCCC-----CHHHHHHHHHhc
Confidence 4578888877653 23345677788886 4444333222 2222 4788887543 3332 244444444332
Q ss_pred ---CCCcEEEeccc
Q 006577 555 ---FHIPVLVCCEA 565 (640)
Q Consensus 555 ---~~VPVyV~aet 565 (640)
.++|+++++..
T Consensus 77 ~~~~~~pii~~s~~ 90 (129)
T 3h1g_A 77 SRFKEIPIIMITAE 90 (129)
T ss_dssp TTCTTCCEEEEESC
T ss_pred CCCCCCeEEEEeCC
Confidence 37999998764
No 311
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3
Probab=27.38 E-value=4.3e+02 Score=26.37 Aligned_cols=98 Identities=16% Similarity=0.089 Sum_probs=51.7
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHH-HHHH-HhCCCceEEEech---HHHHHhh-hccEEEEc
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLL-LRRL-VRKGLSCTYTHIN---AISYIIH-EVTRVFLG 529 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~L-a~eL-~~~GI~vTlI~Ds---Av~~iM~-~VdkVlvG 529 (640)
+.|++-+-+..+..+++.+.+.| -+|++.+ |.+.|... ...+ ...|+.+.++... .+-..+. ++..|++-
T Consensus 69 ~~i~~~sGt~a~~~~~~~~~~~g--~~vl~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~i~~~~~~v~~~ 144 (386)
T 1cs1_A 69 GAVLTNTGMSAIHLVTTVFLKPG--DLLVAPH--DCYGGSYRLFDSLAKRGCYRVLFVDQGDEQALRAALAEKPKLVLVE 144 (386)
T ss_dssp EEEEESSHHHHHHHHHHHHCCTT--CEEEEET--TCCHHHHHHHHHHHTTTSCEEEEECTTCHHHHHHHHHTCCSEEEEE
T ss_pred cEEEeCCHHHHHHHHHHHHhCCC--CEEEEec--CCcHhHHHHHHHHHHhcCCEEEEeCCCCHHHHHHhhccCCcEEEEe
Confidence 44444222444444555443333 3566654 66666332 2333 5678888887632 2333333 45566553
Q ss_pred ceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 530 ADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
..--..|.+.. --.|+-+|++|++.+++
T Consensus 145 -~~~nptG~~~~---l~~i~~l~~~~~~~li~ 172 (386)
T 1cs1_A 145 -SPSNPLLRVVD---IAKICHLAREVGAVSVV 172 (386)
T ss_dssp -CSCTTTCCCCC---HHHHHHHHHHTTCEEEE
T ss_pred -CCCCCCCcccC---HHHHHHHHHHcCCEEEE
Confidence 21122255442 35677789999998776
No 312
>2z1d_A Hydrogenase expression/formation protein HYPD; [NIFE] hydrogenase maturation, [4Fe-4S] cluster, thiol redox binding protein; HET: CSW; 2.07A {Thermococcus kodakarensis}
Probab=27.33 E-value=56 Score=34.94 Aligned_cols=49 Identities=16% Similarity=0.247 Sum_probs=42.1
Q ss_pred EEechHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEe
Q 006577 510 YTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (640)
Q Consensus 510 lI~DsAv~~iM~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~ 562 (640)
..+-.++.++|..=+ .-|.++.=|.|..-+|+-.---+|.+|++|++|.
T Consensus 178 ~l~pPa~~all~~~~----~idgfi~PGHVstIiG~~~y~~l~~~y~~P~VVa 226 (372)
T 2z1d_A 178 RLTPPAVEVLLKQGT----VFQGLIAPGHVSTIIGVKGWEYLTEKYGIPQVVA 226 (372)
T ss_dssp ECHHHHHHHHHHTSC----CCSEEEEEHHHHHHHTTHHHHHHHHHHCCCEEEE
T ss_pred cccHHHHHHHHcCCC----cCcEEEecCeeeEEeccchhHHHHHHcCCCEEEc
Confidence 345678888888666 6788888999999999999999999999999984
No 313
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}
Probab=27.32 E-value=3.9e+02 Score=24.98 Aligned_cols=106 Identities=16% Similarity=0.125 Sum_probs=60.4
Q ss_pred CCCEEEeecCcHHHH-HHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEe-c----hHHHHHhh------
Q 006577 454 DGDVLLTYGSSSAVE-MILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-I----NAISYIIH------ 521 (640)
Q Consensus 454 dgdvILT~g~SstV~-~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~-D----sAv~~iM~------ 521 (640)
.+.+||..|-|+-+- .+.+.+.++| .+|++++-++ .....+..+|.+.|..+.++. | ..+..++.
T Consensus 12 ~~k~vlItGasggiG~~la~~l~~~G--~~V~~~~r~~-~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 88 (260)
T 3awd_A 12 DNRVAIVTGGAQNIGLACVTALAEAG--ARVIIADLDE-AMATKAVEDLRMEGHDVSSVVMDVTNTESVQNAVRSVHEQE 88 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCH-HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC--CEEEEEeCCH-HHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHc
Confidence 466788888776654 3445555656 5787776443 233455577777776666553 3 23444444
Q ss_pred -hccEEEEcceeEecCCC-------------eecccchHHHHHHHhh----CCCcEEEe
Q 006577 522 -EVTRVFLGASSVLSNGT-------------VCSRVGTACVAMVAYG----FHIPVLVC 562 (640)
Q Consensus 522 -~VdkVlvGADaIlaNG~-------------VvNKiGT~~lAlaAk~----~~VPVyV~ 562 (640)
.+|.||--|-.....+. -+|-.|++.+.-.+.. .+...+|.
T Consensus 89 ~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~ 147 (260)
T 3awd_A 89 GRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQKQGVIVA 147 (260)
T ss_dssp SCCCEEEECCCCCCCSCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCEEEECCCCCCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEE
Confidence 57888877643221222 1466788777765543 24445544
No 314
>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2
Probab=27.17 E-value=1.3e+02 Score=29.93 Aligned_cols=108 Identities=11% Similarity=0.048 Sum_probs=54.8
Q ss_pred CEEEeecCcHHHHH-HHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHh----CCCceEEEe-c----hHHHHHhhh--c
Q 006577 456 DVLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVR----KGLSCTYTH-I----NAISYIIHE--V 523 (640)
Q Consensus 456 dvILT~g~SstV~~-vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~----~GI~vTlI~-D----sAv~~iM~~--V 523 (640)
.+||..|-++.+-. +.+.+.++| .+|+++.-++......-...|.+ .+-.+.++. | ..+..++.. +
T Consensus 2 ~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 79 (372)
T 1db3_A 2 KVALITGVTGQDGSYLAEFLLEKG--YEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQP 79 (372)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT--CEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCC
T ss_pred CEEEEECCCChHHHHHHHHHHHCC--CEEEEEECCCcccchHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHhcCC
Confidence 46788888776644 445555656 57887765443211111122221 122333331 2 345566665 6
Q ss_pred cEEEEcceeEecCCC--------eecccchHHHHHHHhhCCC---cEEEeccc
Q 006577 524 TRVFLGASSVLSNGT--------VCSRVGTACVAMVAYGFHI---PVLVCCEA 565 (640)
Q Consensus 524 dkVlvGADaIlaNG~--------VvNKiGT~~lAlaAk~~~V---PVyV~aet 565 (640)
|.||--|-....+.. -+|-.||..+.-+|+.+++ .-+|.+.+
T Consensus 80 d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~SS 132 (372)
T 1db3_A 80 DEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQAST 132 (372)
T ss_dssp SEEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEE
T ss_pred CEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCC
Confidence 888776643221111 2466799999999999987 44444333
No 315
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=27.13 E-value=1.8e+02 Score=27.40 Aligned_cols=80 Identities=18% Similarity=0.157 Sum_probs=47.8
Q ss_pred CeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHH-hh--hccEEEEcceeEecCCCeecccchHHHHHHHhh-
Q 006577 479 KQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYI-IH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYG- 554 (640)
Q Consensus 479 k~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~i-M~--~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~- 554 (640)
...+|+|+|..+.. ...|...|...|+.|....+..-+.- +. ..|.||+..+ +.++ -|.-.+..+-+.
T Consensus 22 ~~~~ILivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvllD~~--lp~~-----~g~~~~~~lr~~~ 93 (250)
T 3r0j_A 22 PEARVLVVDDEANI-VELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVX--MPGM-----DGFGVLRRLRADG 93 (250)
T ss_dssp SSCEEEEECSCHHH-HHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEESC--CSSS-----CHHHHHHHHHHTT
T ss_pred CCceEEEEECCHHH-HHHHHHHHHHCCCEEEEECCHHHHHHHHHhCCCCEEEEeCC--CCCC-----CHHHHHHHHHhcC
Confidence 45788888887754 22345677778888876555433221 22 5888888543 3332 244444444333
Q ss_pred CCCcEEEecccc
Q 006577 555 FHIPVLVCCEAY 566 (640)
Q Consensus 555 ~~VPVyV~aety 566 (640)
.++|+++++...
T Consensus 94 ~~~~ii~lt~~~ 105 (250)
T 3r0j_A 94 IDAPALFLTARD 105 (250)
T ss_dssp CCCCEEEEECST
T ss_pred CCCCEEEEECCC
Confidence 479999987654
No 316
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=27.09 E-value=1.4e+02 Score=29.76 Aligned_cols=19 Identities=11% Similarity=0.025 Sum_probs=14.7
Q ss_pred HHHHHHHhhCCCcEEEecc
Q 006577 546 ACVAMVAYGFHIPVLVCCE 564 (640)
Q Consensus 546 ~~lAlaAk~~~VPVyV~ae 564 (640)
+..+++|+..+||++...-
T Consensus 125 ~~~~~aa~~~giP~v~~~~ 143 (391)
T 3tsa_A 125 LIGRVLGGLLDLPVVLHRW 143 (391)
T ss_dssp HHHHHHHHHTTCCEEEECC
T ss_pred hHHHHHHHHhCCCEEEEec
Confidence 4456788999999988753
No 317
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Probab=27.09 E-value=4.8e+02 Score=25.95 Aligned_cols=72 Identities=11% Similarity=0.030 Sum_probs=39.5
Q ss_pred EEEEcCCCCCchHHHHHHHHHhCCCceEEEech---HHHHHhh-----hccEEEEcceeEecCCCeecccchHHHHHHHh
Q 006577 482 RVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN---AISYIIH-----EVTRVFLGASSVLSNGTVCSRVGTACVAMVAY 553 (640)
Q Consensus 482 ~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds---Av~~iM~-----~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk 553 (640)
+|++.+ |.+.+.... +...|+.+..+..+ .+-.++. ++..|++ ...-...|.+.. --.|+-+|+
T Consensus 134 ~Vl~~~--~~~~~~~~~--~~~~g~~~~~v~~~d~~~le~~l~~~~~~~~~~v~~-~~~~nptG~~~~---l~~i~~l~~ 205 (401)
T 2bwn_A 134 IIYSDS--LNHASMIEG--IKRNAGPKRIFRHNDVAHLRELIAADDPAAPKLIAF-ESVYSMDGDFGP---IKEICDIAE 205 (401)
T ss_dssp EEEEET--TCCHHHHHH--HHHSCCCEEEECTTCHHHHHHHHHHSCTTSCEEEEE-ESBCTTTCCBCC---HHHHHHHHH
T ss_pred EEEECc--hhhHHHHHH--HHHcCCeEEEEcCCCHHHHHHHHHhhccCCceEEEE-ecCcCCCCCcCC---HHHHHHHHH
Confidence 555543 666554433 34478888887632 3333443 2333333 222233465554 356777899
Q ss_pred hCCCcEEE
Q 006577 554 GFHIPVLV 561 (640)
Q Consensus 554 ~~~VPVyV 561 (640)
+|++.+++
T Consensus 206 ~~~~~li~ 213 (401)
T 2bwn_A 206 EFGALTYI 213 (401)
T ss_dssp HHTCEEEE
T ss_pred HcCCEEEE
Confidence 99987776
No 318
>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A
Probab=26.84 E-value=1.5e+02 Score=30.13 Aligned_cols=53 Identities=9% Similarity=0.063 Sum_probs=34.8
Q ss_pred hccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEE
Q 006577 451 KIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTY 510 (640)
Q Consensus 451 ~I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTl 510 (640)
.+..|++||.+|.++.=..++..|+..|- +|++++..+.. .+++++ .|.+..+
T Consensus 176 ~~~~g~~VlV~GaG~vG~~~~qlak~~Ga--~Vi~~~~~~~~--~~~~~~---lGa~~v~ 228 (360)
T 1piw_A 176 GCGPGKKVGIVGLGGIGSMGTLISKAMGA--ETYVISRSSRK--REDAMK---MGADHYI 228 (360)
T ss_dssp TCSTTCEEEEECCSHHHHHHHHHHHHHTC--EEEEEESSSTT--HHHHHH---HTCSEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCC--EEEEEcCCHHH--HHHHHH---cCCCEEE
Confidence 46789999999995544445566666664 68888876653 234444 5766544
No 319
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=26.75 E-value=86 Score=32.25 Aligned_cols=91 Identities=7% Similarity=0.039 Sum_probs=54.5
Q ss_pred HHHHHHHHH----hccC-CCEEEeecCcHHHHHHHHHHHHc---CCeeEEEEcCC----CCCchHHHHHHHHHhC-CCce
Q 006577 442 RVIVKHAVT----KIRD-GDVLLTYGSSSAVEMILQHAHEL---GKQFRVVIVDS----RPKHEGKLLLRRLVRK-GLSC 508 (640)
Q Consensus 442 ~~Ia~~a~~----~I~d-gdvILT~g~SstV~~vL~~A~e~---Gk~f~ViV~ES----RP~~eG~~La~eL~~~-GI~v 508 (640)
+.|++.|++ +|.+ |++ +-.++++++..+....... .++++|+-++. .|......|++.|.+. |+++
T Consensus 125 ~~ia~~AA~~l~~~i~~~~~~-igl~~GsT~~~~~~~L~~~~~~~~~v~vv~l~ggl~~~~~~~~~~i~~~la~~~~~~~ 203 (345)
T 2o0m_A 125 SDFGDVLTNTLNLLLPNGENT-IAVMGGTTMAMVAENMGSLETEKRHNLFVPARGGIGEAVSVQANSISAVMANKTGGNY 203 (345)
T ss_dssp HHHHHHHHHHHHHHCCSEEEE-EEECCSHHHHHHHHTCCCCCCSSEEEEEEESBSCCCCCGGGSHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHHHHHhcCcCCCE-EEECCcHHHHHHHHHhhhccCCCCCcEEEEcCCcCCCCcccCHHHHHHHHHHHhCCce
Confidence 346666665 4888 655 4468888888877766432 24566666542 2333555677888776 7776
Q ss_pred EEE--ech---HH-HHHh------------hhccEEEEcceeE
Q 006577 509 TYT--HIN---AI-SYII------------HEVTRVFLGASSV 533 (640)
Q Consensus 509 TlI--~Ds---Av-~~iM------------~~VdkVlvGADaI 533 (640)
.++ ++. .. -.++ .++|+.|+|.-.+
T Consensus 204 ~~l~~P~~~~~~~~~~l~~~~~~~~~l~~~~~~DiailGIG~~ 246 (345)
T 2o0m_A 204 RALYVPEQLSRETYNSLLQEPSIQEVLTLISHANCVVHSIGRA 246 (345)
T ss_dssp CCCCCCSSCCHHHHHHHHTCHHHHHHHHHHHTCSEEEECCEEH
T ss_pred EEEeccccCCHHHHHHHHhChHHHHHHHHHHcCCEEEEccCCc
Confidence 642 211 11 1112 2699999998643
No 320
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Probab=26.63 E-value=2.5e+02 Score=28.04 Aligned_cols=100 Identities=15% Similarity=0.154 Sum_probs=49.7
Q ss_pred CCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechH-------HHHH---hh-hc
Q 006577 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINA-------ISYI---IH-EV 523 (640)
Q Consensus 455 gdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsA-------v~~i---M~-~V 523 (640)
..+++|.|.+..+..++....+.|. +|++.+ |.+.+.. ..+...|+.+..+.... ...+ +. +.
T Consensus 92 ~~i~~t~g~~~al~~~~~~l~~~gd--~Vlv~~--p~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~ 165 (385)
T 1b5p_A 92 EETIVTVGGSQALFNLFQAILDPGD--EVIVLS--PYWVSYP--EMVRFAGGVVVEVETLPEEGFVPDPERVRRAITPRT 165 (385)
T ss_dssp GGEEEESHHHHHHHHHHHHHCCTTC--EEEEEE--SCCTHHH--HHHHHTTCEEEEEECCGGGTTCCCHHHHHTTCCTTE
T ss_pred HHEEEcCChHHHHHHHHHHhcCCCC--EEEEcC--CCchhHH--HHHHHcCCEEEEeecCcccCCCCCHHHHHHhcCCCC
Confidence 4677776666666666655543342 455543 4444432 33345688777665321 1111 11 22
Q ss_pred cEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 524 TRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 524 dkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
..|++ ++---..|.++..-=-..|+-+|+.|++.|++
T Consensus 166 ~~v~~-~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~ 202 (385)
T 1b5p_A 166 KALVV-NSPNNPTGAVYPKEVLEALARLAVEHDFYLVS 202 (385)
T ss_dssp EEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred EEEEE-eCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEE
Confidence 23322 12111234333332234567788999987776
No 321
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=26.59 E-value=1.7e+02 Score=31.10 Aligned_cols=95 Identities=15% Similarity=0.116 Sum_probs=52.2
Q ss_pred eecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchH-HHHH--------HHHHhCCCceEEEec--------hHHHHHhh-
Q 006577 460 TYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEG-KLLL--------RRLVRKGLSCTYTHI--------NAISYIIH- 521 (640)
Q Consensus 460 T~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG-~~La--------~eL~~~GI~vTlI~D--------sAv~~iM~- 521 (640)
|.+-+..+..+|....+.| -+|++.+. |.+.| ..+. ..|...|+.+..+.. ..+-..+.
T Consensus 97 ~~sGt~Ai~~al~all~pG--D~Vl~~~~-~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~~~~g~~D~e~l~~~l~~ 173 (427)
T 3i16_A 97 FVNGTHALGAALFGNLRPG--NTMLSVCG-EPYDTLHDVIGITENSNMGSLKEFGINYKQVDLKEDGKPNLEEIEKVLKE 173 (427)
T ss_dssp CCSHHHHHHHHHHHHCCTT--CEEEESSS-SCCGGGHHHHTCSCCCSSCCTGGGTCEEEECCCCTTSSCCHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHhCCC--CEEEEeCC-CccHHHHHHHhccccchHHHHHHcCCEEEEecCccCCCcCHHHHHHHhhC
Confidence 4444444444454443334 35666653 44444 3344 456667998887753 33444444
Q ss_pred --hccEEEEcceeEecCCCeecccchH----HHHHHHhh--CCCcEEE
Q 006577 522 --EVTRVFLGASSVLSNGTVCSRVGTA----CVAMVAYG--FHIPVLV 561 (640)
Q Consensus 522 --~VdkVlvGADaIlaNG~VvNKiGT~----~lAlaAk~--~~VPVyV 561 (640)
+..+|++.. +-|...|..|+. .++-+|+. +++.|+|
T Consensus 174 ~~~tklV~i~~----s~~~p~nptg~i~dl~~i~~la~~~~~g~~liv 217 (427)
T 3i16_A 174 DESITLVHIQR----STGYGWRRALLIEDIKSIVDCVKNIRKDIICFV 217 (427)
T ss_dssp CTTEEEEEEEC----SCCSSSSCCCCHHHHHHHHHHHHHHCTTSEEEE
T ss_pred CCCCEEEEEEc----CCCCCCCCcccHHHHHHHHHHHHHhCCCCEEEE
Confidence 344554432 124456666663 46667888 9998887
No 322
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=26.58 E-value=1.6e+02 Score=31.85 Aligned_cols=68 Identities=15% Similarity=0.142 Sum_probs=41.8
Q ss_pred CCCEEEeecCcHHHHH-HHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEcc
Q 006577 454 DGDVLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA 530 (640)
Q Consensus 454 dgdvILT~g~SstV~~-vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGA 530 (640)
+...|+.+|-.++=.. +-+.++++| ++|.+.|.++. .++.+|.+.||++.+-.+.. .+..+|.||++.
T Consensus 21 ~~~~v~viGiG~sG~s~~A~~l~~~G--~~V~~~D~~~~----~~~~~l~~~gi~~~~g~~~~---~~~~~d~vV~Sp 89 (494)
T 4hv4_A 21 RVRHIHFVGIGGAGMGGIAEVLANEG--YQISGSDLAPN----SVTQHLTALGAQIYFHHRPE---NVLDASVVVVST 89 (494)
T ss_dssp -CCEEEEETTTSTTHHHHHHHHHHTT--CEEEEECSSCC----HHHHHHHHTTCEEESSCCGG---GGTTCSEEEECT
T ss_pred cCCEEEEEEEcHhhHHHHHHHHHhCC--CeEEEEECCCC----HHHHHHHHCCCEEECCCCHH---HcCCCCEEEECC
Confidence 3456777665433222 233344444 78888898754 34577999999887654432 245788887764
No 323
>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*
Probab=26.46 E-value=1.9e+02 Score=29.07 Aligned_cols=109 Identities=13% Similarity=0.106 Sum_probs=58.7
Q ss_pred CCEEEeecCcHHHHH-HHHHHH-HcCCeeEEEEcCCCCCch--------HHHHHHHHHhC-C----Cc---eEEE-ec--
Q 006577 455 GDVLLTYGSSSAVEM-ILQHAH-ELGKQFRVVIVDSRPKHE--------GKLLLRRLVRK-G----LS---CTYT-HI-- 513 (640)
Q Consensus 455 gdvILT~g~SstV~~-vL~~A~-e~Gk~f~ViV~ESRP~~e--------G~~La~eL~~~-G----I~---vTlI-~D-- 513 (640)
+.+||..|-++.+=. +++.+. ++| .+|+++.-.+... -..+...|.+. + -. ++++ .|
T Consensus 2 ~m~vlVTGatG~iG~~l~~~L~~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~ 79 (397)
T 1gy8_A 2 HMRVLVCGGAGYIGSHFVRALLRDTN--HSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVR 79 (397)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCC--CEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTT
T ss_pred CCEEEEECCCCHHHHHHHHHHHHhCC--CEEEEEecCCcccccccccchHHHHHHHHHHhhccccccCCceEEEEECCCC
Confidence 347888888776543 445555 555 5777775443321 22332323332 1 12 3333 23
Q ss_pred --hHHHHHhh--h-ccEEEEcceeEecCC--------CeecccchHHHHHHHhhCCCcEEEeccc
Q 006577 514 --NAISYIIH--E-VTRVFLGASSVLSNG--------TVCSRVGTACVAMVAYGFHIPVLVCCEA 565 (640)
Q Consensus 514 --sAv~~iM~--~-VdkVlvGADaIlaNG--------~VvNKiGT~~lAlaAk~~~VPVyV~aet 565 (640)
..+..++. . +|.||--|-...... --+|-.||..+.-+|+.+++.-+|.+.+
T Consensus 80 d~~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~iv~~SS 144 (397)
T 1gy8_A 80 NEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFSSS 144 (397)
T ss_dssp CHHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CHHHHHHHHHhcCCCCEEEECCCccCcCcchhhHHHHHHHHhHHHHHHHHHHHHhCCCEEEEECC
Confidence 34555666 3 777776653221100 0135679999999999999865555444
No 324
>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*
Probab=26.41 E-value=2.4e+02 Score=29.23 Aligned_cols=101 Identities=11% Similarity=0.131 Sum_probs=52.7
Q ss_pred CCEEEeecCcHHHHHHHHHHHHcC-CeeEEEEcCCCCCchHHHHH--HHHHhCCCce-----EEEec--------hHHHH
Q 006577 455 GDVLLTYGSSSAVEMILQHAHELG-KQFRVVIVDSRPKHEGKLLL--RRLVRKGLSC-----TYTHI--------NAISY 518 (640)
Q Consensus 455 gdvILT~g~SstV~~vL~~A~e~G-k~f~ViV~ESRP~~eG~~La--~eL~~~GI~v-----TlI~D--------sAv~~ 518 (640)
+.+++|-|.+..+..++..+.+.| ++-+|++. .|.+-+.... ..+...|+.+ .++.. ..+-.
T Consensus 129 ~~v~~t~g~t~al~~~~~~~~~~~~~~~~Vl~~--~~~~~s~~~~~~~~~~~~G~~~~~~~v~~~~~~~~~~~d~~~l~~ 206 (465)
T 3e9k_A 129 KEIALMNALTVNLHLLMLSFFKPTPKRYKILLE--AKAFPSDHYAIESQLQLHGLNIEESMRMIKPREGEETLRIEDILE 206 (465)
T ss_dssp GGEEECSCHHHHHHHHHHHHCCCCSSSCEEEEE--TTCCHHHHHHHHHHHHHTTCCHHHHEEEECCCTTCSSCCHHHHHH
T ss_pred CCEEEECCHHHHHHHHHHHhccccCCCCEEEEc--CCcCCchHHHHHHHHHHcCCcceeeeEEEecCCCCCccCHHHHHH
Confidence 467777666666655565554333 23445553 3555554442 3455578764 23321 23334
Q ss_pred Hhh----hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 519 IIH----EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 519 iM~----~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
.+. ++ ++|+-...=...|.+.. -..|+-+|+.||+.|++
T Consensus 207 ~i~~~~~~~-~lv~~~~~~n~tG~~~~---l~~i~~la~~~g~~vi~ 249 (465)
T 3e9k_A 207 VIEKEGDSI-AVILFSGVHFYTGQHFN---IPAITKAGQAKGCYVGF 249 (465)
T ss_dssp HHHHHGGGE-EEEEEESBCTTTCBBCC---HHHHHHHHHHTTCEEEE
T ss_pred HHHhcCCCe-EEEEEeCcccCcceeec---HHHHHHHHHHcCCEEEE
Confidence 443 33 33333333333455443 25677789999998876
No 325
>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0
Probab=26.40 E-value=2.2e+02 Score=27.80 Aligned_cols=109 Identities=14% Similarity=0.126 Sum_probs=60.4
Q ss_pred CCCEEEeecCcHHHHH-HHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHh-CCCceEEEe-----chHHHHHhh--hcc
Q 006577 454 DGDVLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVR-KGLSCTYTH-----INAISYIIH--EVT 524 (640)
Q Consensus 454 dgdvILT~g~SstV~~-vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~-~GI~vTlI~-----DsAv~~iM~--~Vd 524 (640)
.+.+||..|-++.+=. +.+.+.++| .+|+++.-++... ..+...+.. .+-.+.++. ...+..++. ++|
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~G--~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (341)
T 3enk_A 4 TKGTILVTGGAGYIGSHTAVELLAHG--YDVVIADNLVNSK-REAIARIEKITGKTPAFHETDVSDERALARIFDAHPIT 80 (341)
T ss_dssp SSCEEEEETTTSHHHHHHHHHHHHTT--CEEEEECCCSSSC-THHHHHHHHHHSCCCEEECCCTTCHHHHHHHHHHSCCC
T ss_pred CCcEEEEecCCcHHHHHHHHHHHHCC--CcEEEEecCCcch-HHHHHHHHhhcCCCceEEEeecCCHHHHHHHHhccCCc
Confidence 3568888888876644 445555555 5677776444322 223333332 133334332 234566666 677
Q ss_pred EEEEcceeEecCC--------CeecccchHHHHHHHhhCCCcEEEeccc
Q 006577 525 RVFLGASSVLSNG--------TVCSRVGTACVAMVAYGFHIPVLVCCEA 565 (640)
Q Consensus 525 kVlvGADaIlaNG--------~VvNKiGT~~lAlaAk~~~VPVyV~aet 565 (640)
.||--|-....+. .-.|-.||..+.-+|+..++.-+|...+
T Consensus 81 ~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS 129 (341)
T 3enk_A 81 AAIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVKRIVFSSS 129 (341)
T ss_dssp EEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred EEEECccccccCccccChHHHHHHHHHHHHHHHHHHHhCCCCEEEEEec
Confidence 7776552211000 0136678999988999998866655444
No 326
>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}
Probab=26.38 E-value=62 Score=31.30 Aligned_cols=26 Identities=8% Similarity=0.070 Sum_probs=20.8
Q ss_pred cccchHHHHHHHhhCCCcEEEecccc
Q 006577 541 SRVGTACVAMVAYGFHIPVLVCCEAY 566 (640)
Q Consensus 541 NKiGT~~lAlaAk~~~VPVyV~aety 566 (640)
|-.||..+.-+|+.+++.-+|.+.+.
T Consensus 95 n~~~~~~ll~a~~~~~v~~~v~~SS~ 120 (321)
T 3vps_A 95 NVDSGRHLLALCTSVGVPKVVVGSTC 120 (321)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEEEEG
T ss_pred HHHHHHHHHHHHHHcCCCeEEEecCH
Confidence 77899999999999998777765543
No 327
>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3
Probab=26.34 E-value=2.2e+02 Score=27.62 Aligned_cols=98 Identities=13% Similarity=0.066 Sum_probs=52.5
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHH-HH-HHhCCCceEEEec---hHHHHHhh-hccEEEEc
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL-RR-LVRKGLSCTYTHI---NAISYIIH-EVTRVFLG 529 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La-~e-L~~~GI~vTlI~D---sAv~~iM~-~VdkVlvG 529 (640)
+.|++-+.+..+..++..+.+.| -+|++. .|.+.+.... .. +...|+.+.++.. ..+-..+. ++..|++
T Consensus 15 ~~i~~~sG~~a~~~~~~~~~~~g--~~v~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~i~~~~~~v~~- 89 (331)
T 1pff_A 15 ACAATASGMGAIAASVWTFLKAG--DHLISD--DCLYGCTHALFEHQLRKFGVEVDFIDMAVPGNIEKHLKPNTRIVYF- 89 (331)
T ss_dssp EEEEESSHHHHHHHHHHHHCCTT--CEEEEE--SCCCHHHHHHHHTHHHHTTCEEEEECTTSTTHHHHTCCTTEEEEEE-
T ss_pred eEEEeCChHHHHHHHHHHhcCCC--CEEEEc--CCCcchHHHHHHHHHHhcCCEEEEeCCCCHHHHHHhhcCCCeEEEE-
Confidence 45544433544444554443333 356665 4666664333 33 4567998888763 22333333 3444444
Q ss_pred ceeEecCCCeecccchHHHHHHHhh-CCCcEEE
Q 006577 530 ASSVLSNGTVCSRVGTACVAMVAYG-FHIPVLV 561 (640)
Q Consensus 530 ADaIlaNG~VvNKiGT~~lAlaAk~-~~VPVyV 561 (640)
...--..|.+.. --.++-+|++ +++++++
T Consensus 90 ~~~~nptG~~~~---~~~i~~~~~~~~~~~li~ 119 (331)
T 1pff_A 90 ETPANPTLKVID---IEDAVKQARKQKDILVIV 119 (331)
T ss_dssp ESSCTTTCCCCC---HHHHHHHHTTSSSCEEEE
T ss_pred ECCCCCcCcccC---HHHHHHHHhhhcCCEEEE
Confidence 222223455553 4567778999 9998876
No 328
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=26.27 E-value=51 Score=29.80 Aligned_cols=78 Identities=17% Similarity=0.178 Sum_probs=45.8
Q ss_pred CeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhh-CCC
Q 006577 479 KQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYG-FHI 557 (640)
Q Consensus 479 k~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~-~~V 557 (640)
+..+|+|+|..+.. ...+...|...|+.|....++.-+ +-...|.||+..+ +.+. + |. .+..+.+. ..+
T Consensus 11 ~~~~iLivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~a-l~~~~dlvl~D~~--mp~~---~--g~-l~~~~~~~~~~~ 80 (196)
T 1qo0_D 11 RELQVLVLNPPGEV-SDALVLQLIRIGCSVRQCWPPPEA-FDVPVDVVFTSIF--QNRH---H--DE-IAALLAAGTPRT 80 (196)
T ss_dssp GGCEEEEESCTTHH-HHHHHHHHHHHTCEEEEECSCCSS-CSSCCSEEEEECC--SSTH---H--HH-HHHHHHHSCTTC
T ss_pred cCCeEEEEcCChhH-HHHHHHHHHHcCCeEEEecCchhh-CCCCCCEEEEeCC--CCcc---c--hH-HHHHHhccCCCC
Confidence 35678888877653 223445666678887766654421 1235788887543 2221 1 44 34444444 689
Q ss_pred cEEEecccc
Q 006577 558 PVLVCCEAY 566 (640)
Q Consensus 558 PVyV~aety 566 (640)
||++++...
T Consensus 81 ~ii~lt~~~ 89 (196)
T 1qo0_D 81 TLVALVEYE 89 (196)
T ss_dssp EEEEEECCC
T ss_pred CEEEEEcCC
Confidence 999987653
No 329
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*
Probab=26.24 E-value=2.1e+02 Score=29.85 Aligned_cols=102 Identities=17% Similarity=0.148 Sum_probs=52.6
Q ss_pred CCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEec-------hHHHHHhh-----
Q 006577 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI-------NAISYIIH----- 521 (640)
Q Consensus 454 dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D-------sAv~~iM~----- 521 (640)
..++++|.|.+..+..+++.+.+.| -+|++. .|.+.|...+ +...|+.+..+.. ..+-..+.
T Consensus 140 ~~~v~~t~G~~~al~~~~~~l~~~G--d~Vlv~--~p~y~~~~~~--~~~~g~~~~~v~~~~~g~d~~~L~~~l~~~~~~ 213 (448)
T 3aow_A 140 DNDIMITSGSQQALDLIGRVFLNPG--DIVVVE--APTYLAALQA--FNFYEPQYIQIPLDDEGMKVEILEEKLKELKSQ 213 (448)
T ss_dssp TSEEEEESSHHHHHHHHHHHHCCTT--CEEEEE--ESCCHHHHHH--HHTTCCEEEEEEEETTEECHHHHHHHHHHHHHT
T ss_pred hhhEEEeCcHHHHHHHHHHHHcCCC--CEEEEe--CCChHHHHHH--HHHcCCEEEEeccCCCCCCHHHHHHHHhhhhcc
Confidence 3467777776666666666554444 345553 3666664433 3446877766542 23333443
Q ss_pred --hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 522 --EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 522 --~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
++..|++=..--...|.++..-=--.|+-+|+.|++.+++
T Consensus 214 ~~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~ 255 (448)
T 3aow_A 214 GKKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVE 255 (448)
T ss_dssp TCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred CCCCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 2333322111111124333321123567788999998776
No 330
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Probab=26.23 E-value=88 Score=31.18 Aligned_cols=69 Identities=20% Similarity=0.311 Sum_probs=38.5
Q ss_pred hccCCCEEEeecC-cHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEec-hH-HHHHhhhccEEE
Q 006577 451 KIRDGDVLLTYGS-SSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI-NA-ISYIIHEVTRVF 527 (640)
Q Consensus 451 ~I~dgdvILT~g~-SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D-sA-v~~iM~~VdkVl 527 (640)
.++.|++||.+|- ++.=...+.-|+..|- +||++.+. . -..+++ +.|.+.++-.. .. ....+..+|.||
T Consensus 149 ~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga--~vi~~~~~-~--~~~~~~---~lGa~~~i~~~~~~~~~~~~~g~D~v~ 220 (321)
T 3tqh_A 149 EVKQGDVVLIHAGAGGVGHLAIQLAKQKGT--TVITTASK-R--NHAFLK---ALGAEQCINYHEEDFLLAISTPVDAVI 220 (321)
T ss_dssp TCCTTCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEECH-H--HHHHHH---HHTCSEEEETTTSCHHHHCCSCEEEEE
T ss_pred CCCCCCEEEEEcCCcHHHHHHHHHHHHcCC--EEEEEecc-c--hHHHHH---HcCCCEEEeCCCcchhhhhccCCCEEE
Confidence 4678999999984 4444455566666664 67777532 2 134444 45776544322 22 333334455554
No 331
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=26.22 E-value=3.6e+02 Score=26.27 Aligned_cols=66 Identities=11% Similarity=0.050 Sum_probs=39.8
Q ss_pred eeE-EEEcCCCCCchHHHHHHHHHhCCC-ceEEEec-hHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCC
Q 006577 480 QFR-VVIVDSRPKHEGKLLLRRLVRKGL-SCTYTHI-NAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFH 556 (640)
Q Consensus 480 ~f~-ViV~ESRP~~eG~~La~eL~~~GI-~vTlI~D-sAv~~iM~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~ 556 (640)
.++ ++++-..+. ..+-..+.+.|+ +|++.-- .-+..+|..+|.+|+.+ | ....+=|-.+|
T Consensus 212 ~~~~l~i~G~~~~---~~l~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v~~s------g--------~~~~~EAma~G 274 (364)
T 1f0k_A 212 SVTIWHQSGKGSQ---QSVEQAYAEAGQPQHKVTEFIDDMAAAYAWADVVVCRS------G--------ALTVSEIAAAG 274 (364)
T ss_dssp GEEEEEECCTTCH---HHHHHHHHHTTCTTSEEESCCSCHHHHHHHCSEEEECC------C--------HHHHHHHHHHT
T ss_pred CcEEEEEcCCchH---HHHHHHHhhcCCCceEEecchhhHHHHHHhCCEEEECC------c--------hHHHHHHHHhC
Confidence 577 344544442 344444555565 4555431 35778899999998763 3 23334455679
Q ss_pred CcEEEe
Q 006577 557 IPVLVC 562 (640)
Q Consensus 557 VPVyV~ 562 (640)
+||++.
T Consensus 275 ~Pvi~~ 280 (364)
T 1f0k_A 275 LPALFV 280 (364)
T ss_dssp CCEEEC
T ss_pred CCEEEe
Confidence 999985
No 332
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*
Probab=26.06 E-value=4.1e+02 Score=26.48 Aligned_cols=16 Identities=0% Similarity=0.000 Sum_probs=12.6
Q ss_pred HHHHHHHhhCCCcEEE
Q 006577 546 ACVAMVAYGFHIPVLV 561 (640)
Q Consensus 546 ~~lAlaAk~~~VPVyV 561 (640)
-.++-+|++|++.+++
T Consensus 207 ~~l~~l~~~~~~~li~ 222 (397)
T 2ord_A 207 EEARKLCDEYDALLVF 222 (397)
T ss_dssp HHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHcCCEEEE
Confidence 4566788999998876
No 333
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Probab=26.03 E-value=2.7e+02 Score=28.04 Aligned_cols=99 Identities=19% Similarity=0.270 Sum_probs=51.8
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEec-----------hHHHHHhh-hc
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI-----------NAISYIIH-EV 523 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D-----------sAv~~iM~-~V 523 (640)
.+++|-|.+..+..+++.+.+.| -+|++.+ |.+.|.. ..+...|+.+..+.. ..+-..+. ++
T Consensus 88 ~v~~t~g~~~al~~~~~~~~~~g--d~Vl~~~--~~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~ 161 (411)
T 2o0r_A 88 EVLVTVGATEAIAAAVLGLVEPG--SEVLLIE--PFYDSYS--PVVAMAGAHRVTVPLVPDGRGFALDADALRRAVTPRT 161 (411)
T ss_dssp SEEEEEHHHHHHHHHHHHHCCTT--CEEEEEE--SCCTTHH--HHHHHTTCEEEEEECEEETTEEECCHHHHHHHCCTTE
T ss_pred eEEEeCCHHHHHHHHHHHhcCCC--CEEEEeC--CCcHhHH--HHHHHcCCEEEEeeccccccCCCCCHHHHHHhhccCc
Confidence 68888777777777766664334 3555543 4454533 234456777666542 12222232 33
Q ss_pred cEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 524 TRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 524 dkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
..|++- ..--..|.++..-=-..|+-+|+.|++.+++
T Consensus 162 ~~v~l~-~~~nptG~~~~~~~l~~i~~~~~~~~~~li~ 198 (411)
T 2o0r_A 162 RALIIN-SPHNPTGAVLSATELAAIAEIAVAANLVVIT 198 (411)
T ss_dssp EEEEEE-SSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred eEEEEe-CCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 344332 1111233333221114567789999998876
No 334
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=25.98 E-value=4.6e+02 Score=25.36 Aligned_cols=98 Identities=16% Similarity=0.210 Sum_probs=51.4
Q ss_pred CEEEeecCcHHHHHHHHHHH----HcCCeeEEEEcCCCCCchHHHHH-HHHHhCCCceEEEech--------HHHHHhhh
Q 006577 456 DVLLTYGSSSAVEMILQHAH----ELGKQFRVVIVDSRPKHEGKLLL-RRLVRKGLSCTYTHIN--------AISYIIHE 522 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~----e~Gk~f~ViV~ESRP~~eG~~La-~eL~~~GI~vTlI~Ds--------Av~~iM~~ 522 (640)
.+++|-|.+..+..++..+. +.|. +|++. .|.+.+...+ ..+...|+.+.++... .+-..+.+
T Consensus 62 ~i~~~~g~~~a~~~~~~~~~~~~~~~gd--~vi~~--~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~ 137 (382)
T 4hvk_A 62 TVVFTSGATEANNLAIIGYAMRNARKGK--HILVS--AVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLRD 137 (382)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHGGGCC--EEEEE--TTCCHHHHHHHHHHHHTTCEEEEECBCTTSCBCHHHHHHHCCT
T ss_pred eEEEECCchHHHHHHHHHhhhhhcCCCC--EEEEC--CCCcHHHHHHHHHHHhcCCEEEEeccCCCCCcCHHHHHHHhcc
Confidence 46666665555555555443 4443 55554 3444444333 4555679988887632 22223332
Q ss_pred ccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 523 VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 523 VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
=.++|+-...--..|.+.. --.|+-+|+.|++ |++
T Consensus 138 ~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~-li~ 172 (382)
T 4hvk_A 138 DTILVSVQHANNEIGTIQP---VEEISEVLAGKAA-LHI 172 (382)
T ss_dssp TEEEEECCSBCTTTCBBCC---HHHHHHHHSSSSE-EEE
T ss_pred CceEEEEECCCCCceeeCC---HHHHHHHHHHcCE-EEE
Confidence 2234333332233454443 3467778999999 665
No 335
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=25.98 E-value=63 Score=27.31 Aligned_cols=80 Identities=10% Similarity=0.055 Sum_probs=47.3
Q ss_pred CeeEEEEcCCCCCchHHHHHHHHHhCC-CceEEEechHHHH-Hh----hhccEEEEcceeEecCCCeecccchHHHHHHH
Q 006577 479 KQFRVVIVDSRPKHEGKLLLRRLVRKG-LSCTYTHINAISY-II----HEVTRVFLGASSVLSNGTVCSRVGTACVAMVA 552 (640)
Q Consensus 479 k~f~ViV~ESRP~~eG~~La~eL~~~G-I~vTlI~DsAv~~-iM----~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaA 552 (640)
...+|+|+|..+.. ...|...|.+.| +.|....+..-+. .+ ...|.||+..+ +.+ .-|.-.+..+-
T Consensus 19 ~~~~ilivdd~~~~-~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~dlvi~D~~--l~~-----~~g~~~~~~l~ 90 (146)
T 4dad_A 19 GMINILVASEDASR-LAHLARLVGDAGRYRVTRTVGRAAQIVQRTDGLDAFDILMIDGA--ALD-----TAELAAIEKLS 90 (146)
T ss_dssp GGCEEEEECSCHHH-HHHHHHHHHHHCSCEEEEECCCHHHHTTCHHHHTTCSEEEEECT--TCC-----HHHHHHHHHHH
T ss_pred CCCeEEEEeCCHHH-HHHHHHHHhhCCCeEEEEeCCHHHHHHHHHhcCCCCCEEEEeCC--CCC-----ccHHHHHHHHH
Confidence 45788888877653 233456777778 8887766655222 22 35788888653 222 22333333333
Q ss_pred h-hCCCcEEEecccc
Q 006577 553 Y-GFHIPVLVCCEAY 566 (640)
Q Consensus 553 k-~~~VPVyV~aety 566 (640)
+ ..++||++++...
T Consensus 91 ~~~~~~~ii~lt~~~ 105 (146)
T 4dad_A 91 RLHPGLTCLLVTTDA 105 (146)
T ss_dssp HHCTTCEEEEEESCC
T ss_pred HhCCCCcEEEEeCCC
Confidence 3 3479999987653
No 336
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A
Probab=25.97 E-value=3.1e+02 Score=25.59 Aligned_cols=100 Identities=11% Similarity=0.109 Sum_probs=59.4
Q ss_pred CCEEEeecCcH--HHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHh-CCCceEEEec------hHHHHHhh--hc
Q 006577 455 GDVLLTYGSSS--AVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVR-KGLSCTYTHI------NAISYIIH--EV 523 (640)
Q Consensus 455 gdvILT~g~Ss--tV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~-~GI~vTlI~D------sAv~~iM~--~V 523 (640)
|.+.|+....- .+..+.+..++.=..|++|.+++ .++.|.+ .||+|+.+.- .-+..+++ +|
T Consensus 12 g~V~lsv~D~dK~~~v~~ak~~~~ll~Gf~l~AT~g--------Ta~~L~e~~Gl~v~~v~k~~eGG~p~I~d~I~~geI 83 (152)
T 1b93_A 12 KHIALVAHDHCKQMLMSWVERHQPLLEQHVLYATGT--------TGNLISRATGMNVNAMLSGPMGGDQQVGALISEGKI 83 (152)
T ss_dssp CEEEEEECGGGHHHHHHHHHHTHHHHTTSEEEEETT--------HHHHHHHHHCCCCEEECCGGGTHHHHHHHHHHTTCC
T ss_pred CEEEEEEehhhHHHHHHHHHHHHHHhCCCEEEEccH--------HHHHHHHHhCceeEEEEecCCCCCchHHHHHHCCCc
Confidence 44444443332 23334444333312588998865 4577777 8999998842 23556666 79
Q ss_pred cEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEeccc
Q 006577 524 TRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEA 565 (640)
Q Consensus 524 dkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~aet 565 (640)
|+||-=-|-+ |.-....-.+.|=-+|-.|+||++---.+
T Consensus 84 dlVInt~~pl---~~~~h~~D~~~IrR~A~~~~IP~~T~lat 122 (152)
T 1b93_A 84 DVLIFFWDPL---NAVPHDPDVKALLRLATVWNIPVATNVAT 122 (152)
T ss_dssp CEEEEECCTT---SCCTTHHHHHHHHHHHHHTTCCEESSHHH
T ss_pred cEEEEcCCcc---cCCcccccHHHHHHHHHHcCCCEEeCHHH
Confidence 9998643300 32222344577778999999999864333
No 337
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=25.85 E-value=1.3e+02 Score=28.79 Aligned_cols=95 Identities=13% Similarity=0.150 Sum_probs=45.7
Q ss_pred CEEEeecCcHHHHH-HHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEcceeEe
Q 006577 456 DVLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVL 534 (640)
Q Consensus 456 dvILT~g~SstV~~-vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGADaIl 534 (640)
.+||..|. +.+-. +++.+.++| ++|+++.-++.. ...|...|+.+...-...+. +.++|.||--|-...
T Consensus 6 ~~ilVtGa-G~iG~~l~~~L~~~g--~~V~~~~r~~~~-----~~~~~~~~~~~~~~D~~d~~--~~~~d~vi~~a~~~~ 75 (286)
T 3ius_A 6 GTLLSFGH-GYTARVLSRALAPQG--WRIIGTSRNPDQ-----MEAIRASGAEPLLWPGEEPS--LDGVTHLLISTAPDS 75 (286)
T ss_dssp CEEEEETC-CHHHHHHHHHHGGGT--CEEEEEESCGGG-----HHHHHHTTEEEEESSSSCCC--CTTCCEEEECCCCBT
T ss_pred CcEEEECC-cHHHHHHHHHHHHCC--CEEEEEEcChhh-----hhhHhhCCCeEEEecccccc--cCCCCEEEECCCccc
Confidence 46777775 65543 344444444 566666544321 22344455544332211111 556777666553211
Q ss_pred cCCCeecccchHHHHHHHhh--CCCcEEEeccc
Q 006577 535 SNGTVCSRVGTACVAMVAYG--FHIPVLVCCEA 565 (640)
Q Consensus 535 aNG~VvNKiGT~~lAlaAk~--~~VPVyV~aet 565 (640)
.+ .-.+..+.-+|+. .++.-+|.+.+
T Consensus 76 -~~----~~~~~~l~~a~~~~~~~~~~~v~~Ss 103 (286)
T 3ius_A 76 -GG----DPVLAALGDQIAARAAQFRWVGYLST 103 (286)
T ss_dssp -TB----CHHHHHHHHHHHHTGGGCSEEEEEEE
T ss_pred -cc----cHHHHHHHHHHHhhcCCceEEEEeec
Confidence 11 1234455556666 67776665444
No 338
>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A*
Probab=25.58 E-value=1.3e+02 Score=30.20 Aligned_cols=112 Identities=15% Similarity=0.076 Sum_probs=59.8
Q ss_pred hccCCCEEEeecCcHHHHH-HHHHHHHcCCeeEEEEcCCCCCchH---------------H-HHHH--HHHhCCCceEEE
Q 006577 451 KIRDGDVLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEG---------------K-LLLR--RLVRKGLSCTYT 511 (640)
Q Consensus 451 ~I~dgdvILT~g~SstV~~-vL~~A~e~Gk~f~ViV~ESRP~~eG---------------~-~La~--eL~~~GI~vTlI 511 (640)
+.+++..||..|-++.+=. +++.+.++| .+|++++-+..... . .+.. .+...++.+. .
T Consensus 7 ~~~~~~~vlVTG~tGfIG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~-~ 83 (404)
T 1i24_A 7 HHHHGSRVMVIGGDGYCGWATALHLSKKN--YEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELY-V 83 (404)
T ss_dssp -----CEEEEETTTSHHHHHHHHHHHHTT--CEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEE-E
T ss_pred cccCCCeEEEeCCCcHHHHHHHHHHHhCC--CeEEEEEecCccccccccccccccccchhhhhhhhHhhccCCceEEE-E
Confidence 4567889999999987754 445555656 57777754322111 0 1111 1222344322 2
Q ss_pred ec----hHHHHHhhh--ccEEEEcceeEecC---CC--------eecccchHHHHHHHhhCCCc-EEEeccc
Q 006577 512 HI----NAISYIIHE--VTRVFLGASSVLSN---GT--------VCSRVGTACVAMVAYGFHIP-VLVCCEA 565 (640)
Q Consensus 512 ~D----sAv~~iM~~--VdkVlvGADaIlaN---G~--------VvNKiGT~~lAlaAk~~~VP-VyV~aet 565 (640)
.| ..+..++.. +|.||--|-..... .+ -+|-.||..+.-+|+.+++. -+|.+.+
T Consensus 84 ~Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~~~V~~SS 155 (404)
T 1i24_A 84 GDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGT 155 (404)
T ss_dssp SCTTSHHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECC
T ss_pred CCCCCHHHHHHHHhccCCCEEEECCCCCCccchhhCccchhhhHHHHHHHHHHHHHHHHHhCCCcEEEEeCc
Confidence 23 345566776 89888776422110 01 24788999999999888863 4444333
No 339
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Probab=25.47 E-value=47 Score=35.20 Aligned_cols=68 Identities=12% Similarity=0.122 Sum_probs=45.1
Q ss_pred CCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEcc
Q 006577 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA 530 (640)
Q Consensus 455 gdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGA 530 (640)
+..|+.+|-..+=....+.++++| .+|++.|+|....|. ..|. .|+++.+-.+. ...+..+|.||++.
T Consensus 5 ~~~v~viG~G~~G~~~a~~l~~~G--~~v~~~D~~~~~~~~---~~l~-~G~~~~~g~~~--~~~~~~~d~vV~s~ 72 (439)
T 2x5o_A 5 GKNVVIIGLGLTGLSCVDFFLARG--VTPRVMDTRMTPPGL---DKLP-EAVERHTGSLN--DEWLMAADLIVASP 72 (439)
T ss_dssp TCCEEEECCHHHHHHHHHHHHTTT--CCCEEEESSSSCTTG---GGSC-TTSCEEESSCC--HHHHHTCSEEEECT
T ss_pred CCEEEEEeecHHHHHHHHHHHhCC--CEEEEEECCCCcchh---HHhh-CCCEEEECCCc--HHHhccCCEEEeCC
Confidence 456888887766555556666555 678889998876654 3456 78888754432 22334788888875
No 340
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=25.47 E-value=2.3e+02 Score=27.59 Aligned_cols=98 Identities=16% Similarity=0.155 Sum_probs=50.7
Q ss_pred CCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEech--------HHHHHhh---h
Q 006577 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN--------AISYIIH---E 522 (640)
Q Consensus 454 dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds--------Av~~iM~---~ 522 (640)
...+++|.|.+..+..++....+.| -+|++.+ |.+.+.. ..+...|+++..+... .+-..+. +
T Consensus 68 ~~~i~~~~g~~~a~~~~~~~l~~~g--d~vl~~~--~~~~~~~--~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~~~~ 141 (354)
T 3ly1_A 68 APSILLTAGSSEGIRAAIEAYASLE--AQLVIPE--LTYGDGE--HFAKIAGMKVTKVKMLDNWAFDIEGLKAAVAAYSG 141 (354)
T ss_dssp GGGEEEESHHHHHHHHHHHHHCCTT--CEEEEES--SSCTHHH--HHHHHTTCEEEEECCCTTSCCCHHHHHHHHHTCSS
T ss_pred hHHEEEeCChHHHHHHHHHHHhCCC--CeEEECC--CCchHHH--HHHHHcCCEEEEecCCCCCCCCHHHHHHHhccCCC
Confidence 3467777666666666665553333 3555543 5565543 3444578888877532 3444443 4
Q ss_pred ccEEEEcceeEecCCCeecccchHHHHHHHhh--CCCcEEE
Q 006577 523 VTRVFLGASSVLSNGTVCSRVGTACVAMVAYG--FHIPVLV 561 (640)
Q Consensus 523 VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~--~~VPVyV 561 (640)
+..|++ ...-...|.++..- .+.-+++. |++.+++
T Consensus 142 ~~~v~l-~~p~nptG~~~~~~---~l~~l~~~~~~~~~li~ 178 (354)
T 3ly1_A 142 PSIVYL-VNPNNPTGTITPAD---VIEPWIASKPANTMFIV 178 (354)
T ss_dssp CEEEEE-ESSCTTTCCCCCHH---HHHHHHHTCCTTEEEEE
T ss_pred CCEEEE-eCCCCCcCCCcCHH---HHHHHHHhCCCCeEEEE
Confidence 555655 22222334444332 23334444 7776665
No 341
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=25.42 E-value=3.2e+02 Score=27.36 Aligned_cols=39 Identities=5% Similarity=-0.003 Sum_probs=24.8
Q ss_pred hccCCCEEEeecCcH-----HHHHHHHHHHHcCCeeEEEEcCCC
Q 006577 451 KIRDGDVLLTYGSSS-----AVEMILQHAHELGKQFRVVIVDSR 489 (640)
Q Consensus 451 ~I~dgdvILT~g~Ss-----tV~~vL~~A~e~Gk~f~ViV~ESR 489 (640)
=|..|+.|+..|.++ .++.+...+..+|...-.+-.|-.
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~s 107 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMG 107 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSSC
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCCC
Confidence 367889888888764 355566666656655444555643
No 342
>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}
Probab=25.27 E-value=2.1e+02 Score=29.06 Aligned_cols=54 Identities=20% Similarity=0.235 Sum_probs=33.9
Q ss_pred hccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEE
Q 006577 451 KIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT 511 (640)
Q Consensus 451 ~I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI 511 (640)
.++.|++||.+|.++.=...+..|+..|- +||+++..+. -.+++ .+.|.+..+-
T Consensus 186 ~~~~g~~VlV~G~G~vG~~a~qla~~~Ga--~Vi~~~~~~~--~~~~~---~~lGa~~vi~ 239 (363)
T 3uog_A 186 HLRAGDRVVVQGTGGVALFGLQIAKATGA--EVIVTSSSRE--KLDRA---FALGADHGIN 239 (363)
T ss_dssp CCCTTCEEEEESSBHHHHHHHHHHHHTTC--EEEEEESCHH--HHHHH---HHHTCSEEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC--EEEEEecCch--hHHHH---HHcCCCEEEc
Confidence 36789999999954443445566665664 7888886553 23333 4457765554
No 343
>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A
Probab=25.21 E-value=4e+02 Score=27.52 Aligned_cols=102 Identities=11% Similarity=0.168 Sum_probs=61.0
Q ss_pred HhccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCC---------C---------chHHHHHHHHHhCC--CceE
Q 006577 450 TKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRP---------K---------HEGKLLLRRLVRKG--LSCT 509 (640)
Q Consensus 450 ~~I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP---------~---------~eG~~La~eL~~~G--I~vT 509 (640)
+.+. +..||..|..++--.++..+...|.. ++.++|... . .--..++..|.+.. +.++
T Consensus 114 ~~L~-~~~VlvvG~GglGs~va~~La~aGvg-~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~ 191 (353)
T 3h5n_A 114 DKLK-NAKVVILGCGGIGNHVSVILATSGIG-EIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKRNSEISVS 191 (353)
T ss_dssp HHHH-TCEEEEECCSHHHHHHHHHHHHHTCS-EEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEE
T ss_pred HHHh-CCeEEEECCCHHHHHHHHHHHhCCCC-eEEEECCCcCcccccccccCCChHHCCChHHHHHHHHHHHHCCCCeEE
Confidence 3443 46899999987766666666666754 333333221 0 01223446676654 5555
Q ss_pred EEe-----chHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEe
Q 006577 510 YTH-----INAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (640)
Q Consensus 510 lI~-----DsAv~~iM~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~ 562 (640)
.+. ++.+.. ++.+|.||.+.|... .--+.+.-+|..+++|++-+
T Consensus 192 ~~~~~i~~~~~~~~-~~~~DlVvd~~Dn~~--------~~r~~ln~~c~~~~~p~i~~ 240 (353)
T 3h5n_A 192 EIALNINDYTDLHK-VPEADIWVVSADHPF--------NLINWVNKYCVRANQPYINA 240 (353)
T ss_dssp EEECCCCSGGGGGG-SCCCSEEEECCCCST--------THHHHHHHHHHHTTCCEEEE
T ss_pred EeecccCchhhhhH-hccCCEEEEecCChH--------HHHHHHHHHHHHhCCCEEEE
Confidence 543 222334 778999988776332 03356667899999999965
No 344
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=25.17 E-value=2.7e+02 Score=27.29 Aligned_cols=70 Identities=11% Similarity=0.033 Sum_probs=40.8
Q ss_pred cCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEE---EechHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHh
Q 006577 477 LGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTY---THINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAY 553 (640)
Q Consensus 477 ~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTl---I~DsAv~~iM~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk 553 (640)
+..++++++.+ .|..+=...++++....-++++ +...-+..+|..+|.+++-. |+. .+=|-
T Consensus 235 ~~~~~~~i~~~-g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~v~~s-------------g~~--~lEA~ 298 (375)
T 3beo_A 235 KHEDVQVVYPV-HMNPVVRETANDILGDYGRIHLIEPLDVIDFHNVAARSYLMLTDS-------------GGV--QEEAP 298 (375)
T ss_dssp HCTTEEEEEEC-CSCHHHHHHHHHHHTTCTTEEEECCCCHHHHHHHHHTCSEEEECC-------------HHH--HHHHH
T ss_pred hCCCeEEEEeC-CCCHHHHHHHHHHhhccCCEEEeCCCCHHHHHHHHHhCcEEEECC-------------CCh--HHHHH
Confidence 34467766643 3332113344444321125666 44557889999999997643 333 34466
Q ss_pred hCCCcEEEe
Q 006577 554 GFHIPVLVC 562 (640)
Q Consensus 554 ~~~VPVyV~ 562 (640)
.+|+||++.
T Consensus 299 a~G~Pvi~~ 307 (375)
T 3beo_A 299 SLGVPVLVL 307 (375)
T ss_dssp HHTCCEEEC
T ss_pred hcCCCEEEe
Confidence 679999985
No 345
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=25.13 E-value=1.1e+02 Score=30.73 Aligned_cols=49 Identities=16% Similarity=0.063 Sum_probs=27.9
Q ss_pred CEEEee--cCcHHH---HHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEe
Q 006577 456 DVLLTY--GSSSAV---EMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH 512 (640)
Q Consensus 456 dvILT~--g~SstV---~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~ 512 (640)
..||.+ +..+-+ ..+...+.++|-..+|++.+ .+...+...|+++.-+.
T Consensus 16 MrIl~~~~~~~gh~~~~~~La~~L~~~GheV~v~~~~--------~~~~~~~~~G~~~~~~~ 69 (398)
T 4fzr_A 16 MRILVIAGCSEGFVMPLVPLSWALRAAGHEVLVAASE--------NMGPTVTGAGLPFAPTC 69 (398)
T ss_dssp CEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEEEG--------GGHHHHHHTTCCEEEEE
T ss_pred eEEEEEcCCCcchHHHHHHHHHHHHHCCCEEEEEcCH--------HHHHHHHhCCCeeEecC
Confidence 345443 433443 34455555677666665531 13456677898887775
No 346
>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}
Probab=25.13 E-value=1.8e+02 Score=29.29 Aligned_cols=52 Identities=23% Similarity=0.337 Sum_probs=32.9
Q ss_pred CCCEEEeecC-cHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEe
Q 006577 454 DGDVLLTYGS-SSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH 512 (640)
Q Consensus 454 dgdvILT~g~-SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~ 512 (640)
.|++||.++- +..=..++..|+..| .+||++++.+. -..++++ .|.+..+-.
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~G--a~Vi~~~~~~~--~~~~~~~---lGa~~vi~~ 202 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAYG--LRVITTASRNE--TIEWTKK---MGADIVLNH 202 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTT--CEEEEECCSHH--HHHHHHH---HTCSEEECT
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcC--CEEEEEeCCHH--HHHHHHh---cCCcEEEEC
Confidence 7999999954 444445556666666 48999987653 2344444 576655543
No 347
>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0
Probab=24.99 E-value=76 Score=30.94 Aligned_cols=101 Identities=10% Similarity=0.093 Sum_probs=55.3
Q ss_pred EEEeecCcHHHHH-HHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEE--EechHHHHHhhhccEEEEcceeE
Q 006577 457 VLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTY--THINAISYIIHEVTRVFLGASSV 533 (640)
Q Consensus 457 vILT~g~SstV~~-vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTl--I~DsAv~~iM~~VdkVlvGADaI 533 (640)
+||..|-++.+=. +.+.+.++| .|+++..+....... ...++.+.. +.|..+..++.++|.||--|-..
T Consensus 3 ~vlVTGatG~iG~~l~~~L~~~g---~~v~~~~~~~~~~~~-----~~~~~~~~~~Dl~~~~~~~~~~~~d~vih~a~~~ 74 (313)
T 3ehe_A 3 LIVVTGGAGFIGSHVVDKLSESN---EIVVIDNLSSGNEEF-----VNEAARLVKADLAADDIKDYLKGAEEVWHIAANP 74 (313)
T ss_dssp CEEEETTTSHHHHHHHHHHTTTS---CEEEECCCSSCCGGG-----SCTTEEEECCCTTTSCCHHHHTTCSEEEECCCCC
T ss_pred EEEEECCCchHHHHHHHHHHhCC---CEEEEEcCCCCChhh-----cCCCcEEEECcCChHHHHHHhcCCCEEEECCCCC
Confidence 5778888877654 444555556 444444433221110 122222111 12455667777899888665422
Q ss_pred ecCCC--------eecccchHHHHHHHhhCCCcEEEeccc
Q 006577 534 LSNGT--------VCSRVGTACVAMVAYGFHIPVLVCCEA 565 (640)
Q Consensus 534 laNG~--------VvNKiGT~~lAlaAk~~~VPVyV~aet 565 (640)
..+.+ -+|-.||..+.-+|+.+++.-+|...+
T Consensus 75 ~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS 114 (313)
T 3ehe_A 75 DVRIGAENPDEIYRNNVLATYRLLEAMRKAGVSRIVFTST 114 (313)
T ss_dssp CCC-CCCCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred ChhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCc
Confidence 11111 137789999999999888865555444
No 348
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Probab=24.81 E-value=2e+02 Score=28.75 Aligned_cols=100 Identities=13% Similarity=0.158 Sum_probs=53.9
Q ss_pred CCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEech-------------------H
Q 006577 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN-------------------A 515 (640)
Q Consensus 455 gdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds-------------------A 515 (640)
..+++|.|-+..+..++..+.+.|. +|++. .|.+.+... .+...|..+..+... .
T Consensus 86 ~~i~~~~g~~~a~~~~~~~~~~~gd--~vl~~--~p~~~~~~~--~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~d~~~ 159 (410)
T 3e2y_A 86 EEILVAVGAYGSLFNSIQGLVDPGD--EVIIM--VPFYDCYEP--MVRMAGAVPVFIPLRSKPTDGMKWTSSDWTFDPRE 159 (410)
T ss_dssp TSEEEESHHHHHHHHHHHHHCCTTC--EEEEE--ESCCTTHHH--HHHHTTCEEEEEECEECCCCSSCCBGGGEECCHHH
T ss_pred CCEEEeCCcHHHHHHHHHHhcCCCC--EEEEe--CCCchhhHH--HHHHcCCEEEEEeccccccccccccccCCcCCHHH
Confidence 5678887777777777766644443 45553 455544332 334467766665421 1
Q ss_pred HHHHhh-hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 516 ISYIIH-EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 516 v~~iM~-~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
+-..+. ++..|++- .---..|.++.+---..++-+|+.|++.+++
T Consensus 160 l~~~~~~~~~~v~~~-~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 205 (410)
T 3e2y_A 160 LESKFSSKTKAIILN-TPHNPLGKVYTRQELQVIADLCVKHDTLCIS 205 (410)
T ss_dssp HHTTCCTTEEEEEEE-SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHhhcCCCceEEEEe-CCCCCCCcCcCHHHHHHHHHHHHHcCcEEEE
Confidence 222222 34445442 2222334444433344567789999998876
No 349
>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*
Probab=24.70 E-value=2.2e+02 Score=29.51 Aligned_cols=73 Identities=16% Similarity=0.242 Sum_probs=41.8
Q ss_pred EEEEcCCCCCchHHH-HHH-H-HHhCCCceEEEechHHHH---Hhh-hccEEEEcceeEe-cCCCeecccchHHHHHHHh
Q 006577 482 RVVIVDSRPKHEGKL-LLR-R-LVRKGLSCTYTHINAISY---IIH-EVTRVFLGASSVL-SNGTVCSRVGTACVAMVAY 553 (640)
Q Consensus 482 ~ViV~ESRP~~eG~~-La~-e-L~~~GI~vTlI~DsAv~~---iM~-~VdkVlvGADaIl-aNG~VvNKiGT~~lAlaAk 553 (640)
+|++. .|.+.|.. +.. . +...|+.+.++...-+.. .+. ++..|++ +.+. ..|.+.. --.|+-+|+
T Consensus 107 ~Vi~~--~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~~~~~v~~--e~~~np~G~~~~---l~~i~~la~ 179 (400)
T 3nmy_A 107 HVVAM--DDLYGGTFRLFERVRRRTAGLDFSFVDLTDPAAFKAAIRADTKMVWI--ETPTNPMLKLVD---IAAIAVIAR 179 (400)
T ss_dssp EEEEE--SSCCHHHHHHHHHTHHHHHCCEEEEECTTSHHHHHHHCCTTEEEEEE--ESSCTTTCCCCC---HHHHHHHHH
T ss_pred EEEEe--CCCchHHHHHHHHhhHhhcCeEEEEECCCCHHHHHHHhccCCCEEEE--ECCCCCCCeeec---HHHHHHHHH
Confidence 55554 35565543 233 3 566799999887433332 332 3444444 2333 3354443 456777899
Q ss_pred hCCCcEEE
Q 006577 554 GFHIPVLV 561 (640)
Q Consensus 554 ~~~VPVyV 561 (640)
+|+++++|
T Consensus 180 ~~g~~liv 187 (400)
T 3nmy_A 180 KHGLLTVV 187 (400)
T ss_dssp HTTCEEEE
T ss_pred HcCCEEEE
Confidence 99998887
No 350
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}
Probab=24.62 E-value=3.7e+02 Score=26.64 Aligned_cols=103 Identities=13% Similarity=0.107 Sum_probs=55.8
Q ss_pred cCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEech---------HHHHHhh-h
Q 006577 453 RDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN---------AISYIIH-E 522 (640)
Q Consensus 453 ~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds---------Av~~iM~-~ 522 (640)
....+++|.|.+..+..+++.+.+.|+ -+|++. .|.+.+.. ..+...|+.+..+... .+-..+. +
T Consensus 98 ~~~~i~~~~g~~~al~~~~~~l~~~g~-d~vl~~--~p~~~~~~--~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~ 172 (398)
T 3ele_A 98 NADNLYMTMGAAASLSICFRALTSDAY-DEFITI--APYFPEYK--VFVNAAGARLVEVPADTEHFQIDFDALEERINAH 172 (398)
T ss_dssp CGGGEEEESSHHHHHHHHHHHHCCSTT-CEEEEE--SSCCTHHH--HHHHHTTCEEEEECCCTTTSSCCHHHHHHTCCTT
T ss_pred ChHHEEEccCHHHHHHHHHHHHcCCCC-CEEEEe--CCCchhhH--HHHHHcCCEEEEEecCCcCCcCCHHHHHHHhCcC
Confidence 345677787777777766666644441 245544 34555533 3344568888877632 2222222 3
Q ss_pred ccEEEEcceeEecCCCeecccchHHHHHHHhh------CCCcEEE
Q 006577 523 VTRVFLGASSVLSNGTVCSRVGTACVAMVAYG------FHIPVLV 561 (640)
Q Consensus 523 VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~------~~VPVyV 561 (640)
+..|++- .---..|.++..---..++-+|+. |++.+++
T Consensus 173 ~~~v~~~-~p~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~ 216 (398)
T 3ele_A 173 TRGVIIN-SPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIA 216 (398)
T ss_dssp EEEEEEC-SSCTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEE
T ss_pred CCEEEEc-CCCCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEE
Confidence 4455442 222334555444434455567777 8887776
No 351
>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A
Probab=24.48 E-value=6.3e+02 Score=28.67 Aligned_cols=105 Identities=16% Similarity=0.181 Sum_probs=67.2
Q ss_pred HHHhccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCC------Cch--------H----HHHHHHHHhC--CCc
Q 006577 448 AVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRP------KHE--------G----KLLLRRLVRK--GLS 507 (640)
Q Consensus 448 a~~~I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP------~~e--------G----~~La~eL~~~--GI~ 507 (640)
+.+.|. +..||..|..++=-.++..+...|.. ++.++|... ..| | ..++..|.+. ++.
T Consensus 320 g~ekL~-~arVLIVGaGGLGs~vA~~La~aGVG-~ItLvD~D~Ve~SNL~RQ~L~~~~dIG~~KAeaaa~~L~~iNP~V~ 397 (615)
T 4gsl_A 320 NLDIIK-NTKVLLLGAGTLGCYVSRALIAWGVR-KITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMD 397 (615)
T ss_dssp CHHHHH-TCEEEEECCSHHHHHHHHHHHHTTCC-EEEEECCCBCCTTGGGTSTTCCGGGTTSBHHHHHHHHHHHHCTTCE
T ss_pred hHHHHh-CCeEEEECCCHHHHHHHHHHHHcCCC-EEEEEcCCCCcccCcccccCCChhhcChHHHHHHHHHHHhhCCCcE
Confidence 344444 46899999998766667666667865 444444321 111 2 2344667765 466
Q ss_pred eEEEec-------------------hHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEec
Q 006577 508 CTYTHI-------------------NAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (640)
Q Consensus 508 vTlI~D-------------------sAv~~iM~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~a 563 (640)
++.+.. ..+..++.++|.||.+.|..- --+.+..+|..+++|++-++
T Consensus 398 v~~~~~~Ipm~gh~v~~e~~~~l~~~~l~~ll~~~DlVvd~tDn~~---------tR~~ln~~c~~~~~PlI~aa 463 (615)
T 4gsl_A 398 ATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDSRE---------SRWLPSLLSNIENKTVINAA 463 (615)
T ss_dssp EEEECCCCCCTTCCCSCHHHHHHHHHHHHHHHHHCSEEEECCSSGG---------GTHHHHHHHHHTTCEEEEEE
T ss_pred EEEeeccccccCccccchhhhcCCHHHHHHHhhcCCEEEecCCCHH---------HHHHHHHHHHHcCCeEEEEE
Confidence 665542 134556789999999887553 23578889999999999754
No 352
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=24.39 E-value=2.6e+02 Score=22.56 Aligned_cols=79 Identities=14% Similarity=0.166 Sum_probs=43.6
Q ss_pred CeeEEEEcCCCCCchHHHHHHHHHhCCC-ceEEEechH--HHHHhh-hccEEEEcceeEecCCCeecccchHHHHHHHh-
Q 006577 479 KQFRVVIVDSRPKHEGKLLLRRLVRKGL-SCTYTHINA--ISYIIH-EVTRVFLGASSVLSNGTVCSRVGTACVAMVAY- 553 (640)
Q Consensus 479 k~f~ViV~ESRP~~eG~~La~eL~~~GI-~vTlI~DsA--v~~iM~-~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk- 553 (640)
+.++|+++|..+.. ...+...|...|+ .+....+.. ..++.. ..|.||+..+ +.+. -|.-.+..+-+
T Consensus 3 ~~~~ilivdd~~~~-~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~dlvi~D~~--l~~~-----~g~~l~~~l~~~ 74 (128)
T 1jbe_A 3 KELKFLVVDDFSTM-RRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWN--MPNM-----DGLELLKTIRAX 74 (128)
T ss_dssp TTCCEEEECSCHHH-HHHHHHHHHHTTCCCEEEESSHHHHHHHHTTCCCCEEEEESC--CSSS-----CHHHHHHHHHC-
T ss_pred CccEEEEECCCHHH-HHHHHHHHHHcCCcEEEeeCCHHHHHHHHHhcCCCEEEEeCC--CCCC-----CHHHHHHHHHhh
Confidence 45678888877653 2334466777787 455544432 222222 4788887543 3332 23333334433
Q ss_pred --hCCCcEEEeccc
Q 006577 554 --GFHIPVLVCCEA 565 (640)
Q Consensus 554 --~~~VPVyV~aet 565 (640)
...+|+++++..
T Consensus 75 ~~~~~~~ii~~s~~ 88 (128)
T 1jbe_A 75 XAMSALPVLMVTAE 88 (128)
T ss_dssp -CCTTCCEEEEESS
T ss_pred cccCCCcEEEEecC
Confidence 236899988654
No 353
>1to6_A Glycerate kinase; glycerate metabolism, structural genomics T831, PSI, protein structure initiative; 2.50A {Neisseria meningitidis serogroup A} SCOP: c.141.1.1
Probab=24.36 E-value=36 Score=36.38 Aligned_cols=48 Identities=17% Similarity=0.194 Sum_probs=33.6
Q ss_pred HHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEeccccc
Q 006577 517 SYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYK 567 (640)
Q Consensus 517 ~~iM~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~aetyK 567 (640)
-..++.+|+||.|==++-. ....----..+|-.|+. +|||+++|.+..
T Consensus 273 ~~~l~~ADLVITGEG~~D~--QT~~GK~p~gVa~~A~~-~~PviaiaG~~~ 320 (371)
T 1to6_A 273 DKKVSDVDLVIVGEGRLDR--QSLAGKAPIGVAKRTPV-GVPVVAICGSLV 320 (371)
T ss_dssp HHHTTTCSEEEECCSEECS--TTTTTCHHHHHHTTSCT-TCCEEEEESEEC
T ss_pred HHHhcCCCEEEECCCCCCC--CCCCCcHHHHHHHHHhc-CCCEEEEeCCCC
Confidence 4567789999999755532 22222224567778889 999999998863
No 354
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=24.35 E-value=1.6e+02 Score=22.96 Aligned_cols=77 Identities=5% Similarity=0.103 Sum_probs=43.3
Q ss_pred EEEEcCCCCCchHHHHHHHHHhCCCceEEEechHH--HHHhh-hccEEEEcceeEecCCCeecccchHHHHHHHhh---C
Q 006577 482 RVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAI--SYIIH-EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYG---F 555 (640)
Q Consensus 482 ~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv--~~iM~-~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~---~ 555 (640)
+|+++|..+.. ...+...|...|+.|....+..- ..+-. ..|.||+..+. .+ .-|.-.+..+.+. .
T Consensus 3 ~iliv~~~~~~-~~~l~~~l~~~g~~v~~~~~~~~~~~~l~~~~~dlii~d~~~--~~-----~~~~~~~~~l~~~~~~~ 74 (119)
T 2j48_A 3 HILLLEEEDEA-ATVVCEMLTAAGFKVIWLVDGSTALDQLDLLQPIVILMAWPP--PD-----QSCLLLLQHLREHQADP 74 (119)
T ss_dssp EEEEECCCHHH-HHHHHHHHHHTTCEEEEESCHHHHHHHHHHHCCSEEEEECST--TC-----CTHHHHHHHHHHTCCCS
T ss_pred EEEEEeCCHHH-HHHHHHHHHhCCcEEEEecCHHHHHHHHHhcCCCEEEEecCC--CC-----CCHHHHHHHHHhccccC
Confidence 56677666543 23345667777887776554322 22222 57888876532 22 2244444444444 5
Q ss_pred CCcEEEecccc
Q 006577 556 HIPVLVCCEAY 566 (640)
Q Consensus 556 ~VPVyV~aety 566 (640)
++|+++++...
T Consensus 75 ~~~ii~~~~~~ 85 (119)
T 2j48_A 75 HPPLVLFLGEP 85 (119)
T ss_dssp SCCCEEEESSC
T ss_pred CCCEEEEeCCC
Confidence 79999987653
No 355
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=24.33 E-value=1.3e+02 Score=27.17 Aligned_cols=58 Identities=14% Similarity=0.190 Sum_probs=43.1
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHH-HHHHhCCCceEEEechH
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLL-RRLVRKGLSCTYTHINA 515 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La-~eL~~~GI~vTlI~DsA 515 (640)
-+|+|..--..+..+|..|.+.|. .|+|+-..-...-+.-+ .++...|+++..+.|.-
T Consensus 81 vvivttddkewikdfieeakergv--evfvvynnkdddrrkeaqqefrsdgvdvrtvsdke 139 (162)
T 2l82_A 81 VVIVTTDDKEWIKDFIEEAKERGV--EVFVVYNNKDDDRRKEAQQEFRSDGVDVRTVSDKE 139 (162)
T ss_dssp EEEEECCCHHHHHHHHHHHHHTTC--EEEEEEECSCHHHHHHHHHHHCCSSCEEEEESSHH
T ss_pred EEEEecCcHHHHHHHHHHHHhcCc--EEEEEecCCCchhHHHHHHHhhhcCceeeecCCHH
Confidence 467777888899999999998774 55555444444444455 78999999999998853
No 356
>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}
Probab=24.31 E-value=1.4e+02 Score=30.05 Aligned_cols=113 Identities=9% Similarity=0.025 Sum_probs=57.2
Q ss_pred EEEeecCcHHHHHHHHHHHHcCCeeEEE-EcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEccee---
Q 006577 457 VLLTYGSSSAVEMILQHAHELGKQFRVV-IVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASS--- 532 (640)
Q Consensus 457 vILT~g~SstV~~vL~~A~e~Gk~f~Vi-V~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGADa--- 532 (640)
.|..+|..+.....+... ...++|+ |++..+.....+++..+.+.|+.+....|-.-..--.++|.|+|..-.
T Consensus 4 rvgiiG~G~~~~~~~~~l---~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~I~tp~~~H 80 (337)
T 3ip3_A 4 KICVIGSSGHFRYALEGL---DEECSITGIAPGVPEEDLSKLEKAISEMNIKPKKYNNWWEMLEKEKPDILVINTVFSLN 80 (337)
T ss_dssp EEEEECSSSCHHHHHTTC---CTTEEEEEEECSSTTCCCHHHHHHHHTTTCCCEECSSHHHHHHHHCCSEEEECSSHHHH
T ss_pred EEEEEccchhHHHHHHhc---CCCcEEEEEecCCchhhHHHHHHHHHHcCCCCcccCCHHHHhcCCCCCEEEEeCCcchH
Confidence 455566543333333222 3456655 566666444455666666778876665553332223469999885321
Q ss_pred ------EecCC--------CeecccchHHHHHHHhhCCCcE-EEecccccccccc
Q 006577 533 ------VLSNG--------TVCSRVGTACVAMVAYGFHIPV-LVCCEAYKFHERV 572 (640)
Q Consensus 533 ------IlaNG--------~VvNKiGT~~lAlaAk~~~VPV-yV~aetyKf~~~~ 572 (640)
.+..| -..+.--...+.-+|+..++.+ +.++-.+.|++.+
T Consensus 81 ~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~~~v~~~~R~~p~~ 135 (337)
T 3ip3_A 81 GKILLEALERKIHAFVEKPIATTFEDLEKIRSVYQKVRNEVFFTAMFGIRYRPHF 135 (337)
T ss_dssp HHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTTTCCEEECCGGGGSHHH
T ss_pred HHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCceEEEecccccCCHHH
Confidence 12222 1223334444555666677762 2334455665544
No 357
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=24.23 E-value=1.5e+02 Score=28.90 Aligned_cols=71 Identities=14% Similarity=0.215 Sum_probs=40.3
Q ss_pred EEEeecCcHHHHHHHHHHHHcCC-eeEEEEc-CCCCCchHHHHHHHHHhCCCceEEEec----------hHHHHHhh--h
Q 006577 457 VLLTYGSSSAVEMILQHAHELGK-QFRVVIV-DSRPKHEGKLLLRRLVRKGLSCTYTHI----------NAISYIIH--E 522 (640)
Q Consensus 457 vILT~g~SstV~~vL~~A~e~Gk-~f~ViV~-ESRP~~eG~~La~eL~~~GI~vTlI~D----------sAv~~iM~--~ 522 (640)
.||.-|+.+..+.+|.. .+.|. ..+|.++ -.+|...+.+.| .+.||++.++.. ..+...++ +
T Consensus 6 avl~Sg~Gsnl~ali~~-~~~~~l~~eI~~Visn~~~a~v~~~A---~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~ 81 (211)
T 3p9x_A 6 AIFASGSGTNAEAIIQS-QKAGQLPCEVALLITDKPGAKVVERV---KVHEIPVCALDPKTYPSKEAYEIEVVQQLKEKQ 81 (211)
T ss_dssp EEECCTTCHHHHHHHHH-HHTTCCSSEEEEEEESCSSSHHHHHH---HTTTCCEEECCGGGSSSHHHHHHHHHHHHHHTT
T ss_pred EEEEeCCchHHHHHHHH-HHcCCCCcEEEEEEECCCCcHHHHHH---HHcCCCEEEeChhhcCchhhhHHHHHHHHHhcC
Confidence 46666766666666654 44453 2333322 245665444433 457999987752 34444555 6
Q ss_pred ccEEEEcce
Q 006577 523 VTRVFLGAS 531 (640)
Q Consensus 523 VdkVlvGAD 531 (640)
+|.+++.+-
T Consensus 82 ~Dliv~agy 90 (211)
T 3p9x_A 82 IDFVVLAGY 90 (211)
T ss_dssp CCEEEESSC
T ss_pred CCEEEEeCc
Confidence 888877653
No 358
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=24.17 E-value=44 Score=31.43 Aligned_cols=74 Identities=18% Similarity=0.214 Sum_probs=41.2
Q ss_pred EEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEcceeEecCCCeecccchHH----HHHHHhhCCC
Q 006577 482 RVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTAC----VAMVAYGFHI 557 (640)
Q Consensus 482 ~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGADaIlaNG~VvNKiGT~~----lAlaAk~~~V 557 (640)
+|.|+|---.+- ..+.+.|.+.|++++++.|.. .+..+|.+|+ +.|+-....+-.. +.-.+.+.++
T Consensus 4 ~I~iiD~g~~n~-~si~~al~~~G~~~~v~~~~~---~l~~~D~lil------PG~g~~~~~~~~~~~~~~i~~~~~~~~ 73 (211)
T 4gud_A 4 NVVIIDTGCANI-SSVKFAIERLGYAVTISRDPQ---VVLAADKLFL------PGVGTASEAMKNLTERDLIELVKRVEK 73 (211)
T ss_dssp CEEEECCCCTTH-HHHHHHHHHTTCCEEEECCHH---HHHHCSEEEE------CCCSCHHHHHHHHHHTTCHHHHHHCCS
T ss_pred EEEEEECCCChH-HHHHHHHHHCCCEEEEECCHH---HHhCCCEEEE------CCCCCHHHHHHHHHhcChHHHHHHcCC
Confidence 355555322221 346688999999999887643 4567888765 3222111111111 1123556799
Q ss_pred cEEEeccc
Q 006577 558 PVLVCCEA 565 (640)
Q Consensus 558 PVyV~aet 565 (640)
||+-+|=-
T Consensus 74 PvlGIClG 81 (211)
T 4gud_A 74 PLLGICLG 81 (211)
T ss_dssp CEEEETHH
T ss_pred CEEEEchh
Confidence 99966633
No 359
>1d1q_A Tyrosine phosphatase (E.C.3.1.3.48); beta-alpha-beta, hydrolase; HET: 4NP; 1.70A {Saccharomyces cerevisiae} SCOP: c.44.1.1 PDB: 1d2a_A* 1d1p_A*
Probab=24.12 E-value=69 Score=29.53 Aligned_cols=72 Identities=14% Similarity=0.093 Sum_probs=47.2
Q ss_pred EEEee-----cCcHHHHHHHHHHHH-cCCe---eEEEEcCCCCCchH----HHHHHHHHhCCCceEEEechHH-HHHhhh
Q 006577 457 VLLTY-----GSSSAVEMILQHAHE-LGKQ---FRVVIVDSRPKHEG----KLLLRRLVRKGLSCTYTHINAI-SYIIHE 522 (640)
Q Consensus 457 vILT~-----g~SstV~~vL~~A~e-~Gk~---f~ViV~ESRP~~eG----~~La~eL~~~GI~vTlI~DsAv-~~iM~~ 522 (640)
.||.. |+|..++.++++... .|.. |.|.-.-+.++..| .+..+.|.+.||++. ..-..+ ...+..
T Consensus 9 ~VLFVCtgN~cRSpmAEal~~~~~~~~gl~~~~~~v~SAGt~~~~~g~~~~p~a~~~l~~~Gid~s-~~ar~l~~~~~~~ 87 (161)
T 1d1q_A 9 SVAFIALGNFCRSPMAEAIFKHEVEKANLENRFNKIDSFGTSNYHVGESPDHRTVSICKQHGVKIN-HKGKQIKTKHFDE 87 (161)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHTTCGGGEEEEEEEESSCTTBTCCCCHHHHHHHHHTTCCCC-CCBCBCCGGGGGT
T ss_pred EEEEEcCCcHHHHHHHHHHHHHHHHHcCCCCCeEEEEeccccCCcCCCCCCHHHHHHHHHcCcCCC-ceEeECCHHHHhh
Confidence 46654 567889999988654 4543 88998888886655 244588999999876 221112 123456
Q ss_pred ccEEEEc
Q 006577 523 VTRVFLG 529 (640)
Q Consensus 523 VdkVlvG 529 (640)
.|.||.=
T Consensus 88 ~DlIl~M 94 (161)
T 1d1q_A 88 YDYIIGM 94 (161)
T ss_dssp CSEEEES
T ss_pred CCEEEEe
Confidence 7777654
No 360
>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*
Probab=24.09 E-value=1e+02 Score=30.17 Aligned_cols=107 Identities=14% Similarity=0.061 Sum_probs=58.4
Q ss_pred CCEEEeecCcHHHHH-HHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEE-ec----hHHHHHhhh--ccEE
Q 006577 455 GDVLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT-HI----NAISYIIHE--VTRV 526 (640)
Q Consensus 455 gdvILT~g~SstV~~-vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI-~D----sAv~~iM~~--VdkV 526 (640)
|.+||..|-++.+-. +.+.+.++| .+|+++.-++...-......+.. +-.+.++ .| ..+..++.. +|.|
T Consensus 3 ~~~vlVtGatG~iG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v 79 (345)
T 2z1m_A 3 GKRALITGIRGQDGAYLAKLLLEKG--YEVYGADRRSGEFASWRLKELGI-ENDVKIIHMDLLEFSNIIRTIEKVQPDEV 79 (345)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT--CEEEEECSCCSTTTTHHHHHTTC-TTTEEECCCCTTCHHHHHHHHHHHCCSEE
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC--CEEEEEECCCcccccccHhhccc-cCceeEEECCCCCHHHHHHHHHhcCCCEE
Confidence 567888898877644 445555555 57777765443211111122211 1234433 22 345566665 5888
Q ss_pred EEcceeEecC---CC-----eecccchHHHHHHHhhCCC-cEEEecc
Q 006577 527 FLGASSVLSN---GT-----VCSRVGTACVAMVAYGFHI-PVLVCCE 564 (640)
Q Consensus 527 lvGADaIlaN---G~-----VvNKiGT~~lAlaAk~~~V-PVyV~ae 564 (640)
|--|-....+ .. -+|-.||..+.-+|+.+++ .-+|.+.
T Consensus 80 ih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~S 126 (345)
T 2z1m_A 80 YNLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVKPDTKFYQAS 126 (345)
T ss_dssp EECCCCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred EECCCCcchhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEe
Confidence 8766432110 11 2477899999988888886 4444433
No 361
>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}
Probab=24.05 E-value=2.1e+02 Score=28.71 Aligned_cols=53 Identities=21% Similarity=0.449 Sum_probs=34.6
Q ss_pred hccCCCEEEeecCcHHH-HHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEE
Q 006577 451 KIRDGDVLLTYGSSSAV-EMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTY 510 (640)
Q Consensus 451 ~I~dgdvILT~g~SstV-~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTl 510 (640)
.+..|++||.+|.++.+ ..++..|+..| .+|++++.++.. ..++++| |.+..+
T Consensus 156 ~~~~g~~VlV~Gasg~iG~~~~~~a~~~G--a~Vi~~~~~~~~--~~~~~~~---ga~~v~ 209 (342)
T 4eye_A 156 QLRAGETVLVLGAAGGIGTAAIQIAKGMG--AKVIAVVNRTAA--TEFVKSV---GADIVL 209 (342)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHTT--CEEEEEESSGGG--HHHHHHH---TCSEEE
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHcC--CEEEEEeCCHHH--HHHHHhc---CCcEEe
Confidence 36789999999986554 44555566566 488988876643 3445544 665544
No 362
>1xdp_A Polyphosphate kinase; PPK, PPK complex with AMPPNP, AMPPNP, transferase; HET: ATP; 2.50A {Escherichia coli} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4 PDB: 1xdo_A*
Probab=24.01 E-value=78 Score=36.36 Aligned_cols=48 Identities=23% Similarity=0.259 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHcCCeeEEEEcCCCCCch--HHHHHHHHHhCCCceEEEe
Q 006577 465 SAVEMILQHAHELGKQFRVVIVDSRPKHE--GKLLLRRLVRKGLSCTYTH 512 (640)
Q Consensus 465 stV~~vL~~A~e~Gk~f~ViV~ESRP~~e--G~~La~eL~~~GI~vTlI~ 512 (640)
+.+...|..|.++|+..+|++..-....+ ....++.|.++||.+.+..
T Consensus 379 ~~I~~AL~~AA~rGV~VrVLvd~~a~~~~~~n~~~~~~L~~aGV~V~~~~ 428 (687)
T 1xdp_A 379 SRIIDSMIHAAHNGKKVTVVVELQARFDEEANIHWAKRLTEAGVHVIFSA 428 (687)
T ss_dssp CHHHHHHHHHHHTTCEEEEEECTTCSSTTTTTTTTTHHHHHHTCEEEECC
T ss_pred HHHHHHHHHHHhcCCEEEEEECCCcccchhhHHHHHHHHHHCCCEEEEec
Confidence 44555666666677777766543222211 2344567777777776543
No 363
>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*
Probab=23.96 E-value=60 Score=32.23 Aligned_cols=108 Identities=15% Similarity=0.131 Sum_probs=54.6
Q ss_pred CCCEEEeecCcHHHHH-HHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEccee
Q 006577 454 DGDVLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASS 532 (640)
Q Consensus 454 dgdvILT~g~SstV~~-vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGADa 532 (640)
.+.+||..|-++.+-. +++.+.++| .+|+++.-.+...-..+ ..+.. .-.+.++.-...-..+.++|.||--|-.
T Consensus 26 ~~~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~-~~~~~-~~~~~~~~~D~~~~~~~~~d~vih~A~~ 101 (343)
T 2b69_A 26 DRKRILITGGAGFVGSHLTDKLMMDG--HEVTVVDNFFTGRKRNV-EHWIG-HENFELINHDVVEPLYIEVDQIYHLASP 101 (343)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEECCSSCCGGGT-GGGTT-CTTEEEEECCTTSCCCCCCSEEEECCSC
T ss_pred CCCEEEEEcCccHHHHHHHHHHHHCC--CEEEEEeCCCccchhhh-hhhcc-CCceEEEeCccCChhhcCCCEEEECccc
Confidence 3568888898877654 445555555 56776654332111111 11111 1234443311111123456666654422
Q ss_pred EecC---C-----CeecccchHHHHHHHhhCCCcEEEeccc
Q 006577 533 VLSN---G-----TVCSRVGTACVAMVAYGFHIPVLVCCEA 565 (640)
Q Consensus 533 IlaN---G-----~VvNKiGT~~lAlaAk~~~VPVyV~aet 565 (640)
.... . --+|-.||..+.-+|+..++.|+.++..
T Consensus 102 ~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS~ 142 (343)
T 2b69_A 102 ASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTS 142 (343)
T ss_dssp CSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEG
T ss_pred cCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCcEEEECcH
Confidence 1100 0 0246778999998898888876665443
No 364
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=23.95 E-value=3.4e+02 Score=23.24 Aligned_cols=37 Identities=19% Similarity=0.214 Sum_probs=25.0
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEe
Q 006577 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (640)
Q Consensus 522 ~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~ 562 (640)
++|.|++|+..--.-+ --.|+..-.+ .++-.+||+|+
T Consensus 119 ~~DlIV~G~~g~~~~~---~~~Gs~~~~v-l~~a~~PVlvV 155 (156)
T 3fg9_A 119 KPDLLVTGADTEFPHS---KIAGAIGPRL-ARKAPISVIVV 155 (156)
T ss_dssp CCSEEEEETTCCCTTS---SSCSCHHHHH-HHHCSSEEEEE
T ss_pred CCCEEEECCCCCCccc---eeecchHHHH-HHhCCCCEEEe
Confidence 6799999998532221 2467655444 56678999986
No 365
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=23.94 E-value=2.7e+02 Score=22.20 Aligned_cols=76 Identities=13% Similarity=0.138 Sum_probs=41.6
Q ss_pred EEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHH-Hhh--hccEEEEcceeEecCCCeecccchHHHHHHH-hhCCC
Q 006577 482 RVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISY-IIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVA-YGFHI 557 (640)
Q Consensus 482 ~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~-iM~--~VdkVlvGADaIlaNG~VvNKiGT~~lAlaA-k~~~V 557 (640)
+|.++|..+.. ...+...|...|+.|....+..-+. .+. ..|.||+..+ +.++ -|.-.+..+- ....+
T Consensus 2 ~ilivdd~~~~-~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~dlil~D~~--l~~~-----~g~~~~~~l~~~~~~~ 73 (121)
T 2pl1_A 2 RVLVVEDNALL-RHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLG--LPDE-----DGLSLIRRWRSNDVSL 73 (121)
T ss_dssp EEEEECSCHHH-HHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSC--CSSS-----CHHHHHHHHHHTTCCS
T ss_pred eEEEEeCcHHH-HHHHHHHHhhcCCEEEEeCCHHHHHHHHhccCCCEEEEecC--CCCC-----CHHHHHHHHHhcCCCC
Confidence 56677766542 2334466777788777665543322 222 4788887543 3332 1322233332 34579
Q ss_pred cEEEeccc
Q 006577 558 PVLVCCEA 565 (640)
Q Consensus 558 PVyV~aet 565 (640)
|+++++..
T Consensus 74 ~ii~~s~~ 81 (121)
T 2pl1_A 74 PILVLTAR 81 (121)
T ss_dssp CEEEEESC
T ss_pred CEEEEecC
Confidence 99998664
No 366
>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1
Probab=23.89 E-value=4.1e+02 Score=26.61 Aligned_cols=100 Identities=15% Similarity=0.110 Sum_probs=49.5
Q ss_pred CCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEech----------HHHHHhh-hc
Q 006577 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN----------AISYIIH-EV 523 (640)
Q Consensus 455 gdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds----------Av~~iM~-~V 523 (640)
..+++|-|.+..+..++..+.+.| -+|++. .|.+.|... .+...|+.+..+... .+-..+. ++
T Consensus 102 ~~v~~t~g~~~al~~~~~~l~~~g--d~Vl~~--~~~~~~~~~--~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~ 175 (406)
T 1xi9_A 102 DDVRVTAAVTEALQLIFGALLDPG--DEILVP--GPSYPPYTG--LVKFYGGKPVEYRTIEEEDWQPDIDDIRKKITDRT 175 (406)
T ss_dssp GGEEEESHHHHHHHHHHHHHCCTT--CEEEEE--ESCCHHHHH--HHHHTTCEEEEEEEEGGGTSEECHHHHHHHCCTTE
T ss_pred HHEEEcCChHHHHHHHHHHhCCCC--CEEEEc--CCCCccHHH--HHHHcCCEEEEeecCCCcCCcCCHHHHHHhhCcCc
Confidence 456777666666666666554333 345554 345555333 334467776665421 1222222 23
Q ss_pred cEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 524 TRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 524 dkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
..|++- ..--..|.++..-=-..|+-+|+.|++.+++
T Consensus 176 ~~v~i~-~p~nptG~~~~~~~l~~i~~~a~~~~~~li~ 212 (406)
T 1xi9_A 176 KAIAVI-NPNNPTGALYDKKTLEEILNIAGEYEIPVIS 212 (406)
T ss_dssp EEEEEE-SSCTTTCCCCCHHHHHHHHHHHHHHTCCEEE
T ss_pred eEEEEE-CCCCCCCCCcCHHHHHHHHHHHHHcCCEEEE
Confidence 333331 1111233333222234566688899998876
No 367
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=23.88 E-value=2.5e+02 Score=27.11 Aligned_cols=71 Identities=15% Similarity=0.210 Sum_probs=40.8
Q ss_pred EEeecCcHHHHHHHHHHHHcCCeeEEEEc-CCCCCchHHHHHHHHHhCCCceEEEec----------hHHHHHhh--hcc
Q 006577 458 LLTYGSSSAVEMILQHAHELGKQFRVVIV-DSRPKHEGKLLLRRLVRKGLSCTYTHI----------NAISYIIH--EVT 524 (640)
Q Consensus 458 ILT~g~SstV~~vL~~A~e~Gk~f~ViV~-ESRP~~eG~~La~eL~~~GI~vTlI~D----------sAv~~iM~--~Vd 524 (640)
||..|..+....+|...++.+...+|..+ -.+|...|.+.| .+.||++.++.. ..+...++ ++|
T Consensus 6 vl~SG~g~~~~~~l~~l~~~~~~~~i~~Vvs~~~~~~~~~~A---~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~~D 82 (216)
T 2ywr_A 6 VLVSGRGSNLQAIIDAIESGKVNASIELVISDNPKAYAIERC---KKHNVECKVIQRKEFPSKKEFEERMALELKKKGVE 82 (216)
T ss_dssp EEECSCCHHHHHHHHHHHTTSSCEEEEEEEESCTTCHHHHHH---HHHTCCEEECCGGGSSSHHHHHHHHHHHHHHTTCC
T ss_pred EEEeCCcHHHHHHHHHHHhCCCCCeEEEEEeCCCChHHHHHH---HHcCCCEEEeCcccccchhhhhHHHHHHHHhcCCC
Confidence 44447777777777766654433344322 234555555444 456999987642 33444444 678
Q ss_pred EEEEcce
Q 006577 525 RVFLGAS 531 (640)
Q Consensus 525 kVlvGAD 531 (640)
.+++.+-
T Consensus 83 liv~a~y 89 (216)
T 2ywr_A 83 LVVLAGF 89 (216)
T ss_dssp EEEESSC
T ss_pred EEEEeCc
Confidence 8877543
No 368
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=23.85 E-value=1.8e+02 Score=24.67 Aligned_cols=59 Identities=10% Similarity=0.157 Sum_probs=38.9
Q ss_pred EEEeecCcHHHHHHHHHHH----HcCCeeEEEEcCCC-CCchHHHHHHHHHh----CCCceEEEechH
Q 006577 457 VLLTYGSSSAVEMILQHAH----ELGKQFRVVIVDSR-PKHEGKLLLRRLVR----KGLSCTYTHINA 515 (640)
Q Consensus 457 vILT~g~SstV~~vL~~A~----e~Gk~f~ViV~ESR-P~~eG~~La~eL~~----~GI~vTlI~DsA 515 (640)
.|.+..+...+...|.... .....+.++++|-. |...|..+++.|.+ .++++.+++...
T Consensus 32 ~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~g~~~~~~lr~~~~~~~~pii~~t~~~ 99 (152)
T 3heb_A 32 EIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMTGIDILKLVKENPHTRRSPVVILTTTD 99 (152)
T ss_dssp CEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSBHHHHHHHHHHSTTTTTSCEEEEESCC
T ss_pred eEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCCCCCCcHHHHHHHHHhcccccCCCEEEEecCC
Confidence 5666655555555443211 12467888888854 88899999999987 357777777543
No 369
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*
Probab=23.84 E-value=2.3e+02 Score=28.15 Aligned_cols=53 Identities=19% Similarity=0.301 Sum_probs=30.4
Q ss_pred CCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEe
Q 006577 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH 512 (640)
Q Consensus 455 gdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~ 512 (640)
..+++|.|.+..+..+++...+.|+ -+|++. .|.+.+...+ +...|..+..+.
T Consensus 76 ~~v~~~~G~~~ai~~~~~~~~~~g~-d~Vl~~--~p~~~~~~~~--~~~~g~~~~~v~ 128 (356)
T 1fg7_A 76 EQVLVSRGADEGIELLIRAFCEPGK-DAILYC--PPTYGMYSVS--AETIGVECRTVP 128 (356)
T ss_dssp GGEEEESHHHHHHHHHHHHHCCTTT-CEEEEC--SSSCTHHHHH--HHHHTCEEEECC
T ss_pred HHEEEcCCHHHHHHHHHHHHhCCCC-CEEEEe--CCChHHHHHH--HHHcCCEEEEee
Confidence 4577776666666666655543341 356654 4777765543 233577766654
No 370
>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}
Probab=23.81 E-value=2.8e+02 Score=29.67 Aligned_cols=97 Identities=14% Similarity=0.111 Sum_probs=55.2
Q ss_pred CCEEEeecCcHHHHHHH-HHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEcceeE
Q 006577 455 GDVLLTYGSSSAVEMIL-QHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSV 533 (640)
Q Consensus 455 gdvILT~g~SstV~~vL-~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGADaI 533 (640)
+.+||..|-++.+-..| ..+.++| .+|+++.-++.... . +..-.+......+.++|.||--|-..
T Consensus 147 ~m~VLVTGatG~IG~~l~~~L~~~G--~~V~~l~R~~~~~~----------~--v~~d~~~~~~~~l~~~D~Vih~A~~~ 212 (516)
T 3oh8_A 147 PLTVAITGSRGLVGRALTAQLQTGG--HEVIQLVRKEPKPG----------K--RFWDPLNPASDLLDGADVLVHLAGEP 212 (516)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTT--CEEEEEESSSCCTT----------C--EECCTTSCCTTTTTTCSEEEECCCC-
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC--CEEEEEECCCCCcc----------c--eeecccchhHHhcCCCCEEEECCCCc
Confidence 67899999888765544 4455555 46777654443210 0 11111122234456788888655432
Q ss_pred ecC----CC-----eecccchHHHHHH-HhhCCCcEEEeccc
Q 006577 534 LSN----GT-----VCSRVGTACVAMV-AYGFHIPVLVCCEA 565 (640)
Q Consensus 534 laN----G~-----VvNKiGT~~lAla-Ak~~~VPVyV~aet 565 (640)
..+ .. -+|-.||..++-+ |+..++..+|.+.+
T Consensus 213 ~~~~~~~~~~~~~~~~Nv~gt~~ll~a~a~~~~~~r~V~~SS 254 (516)
T 3oh8_A 213 IFGRFNDSHKEAIRESRVLPTKFLAELVAESTQCTTMISASA 254 (516)
T ss_dssp ----CCGGGHHHHHHHTHHHHHHHHHHHHHCSSCCEEEEEEE
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCc
Confidence 111 00 1377889988887 78888877776555
No 371
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}
Probab=23.77 E-value=1.7e+02 Score=31.01 Aligned_cols=95 Identities=11% Similarity=0.053 Sum_probs=51.7
Q ss_pred eecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHH-HHH--------HHHHhCCCceEEEec-------hHHHHHhh--
Q 006577 460 TYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGK-LLL--------RRLVRKGLSCTYTHI-------NAISYIIH-- 521 (640)
Q Consensus 460 T~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~-~La--------~eL~~~GI~vTlI~D-------sAv~~iM~-- 521 (640)
|.+-+..+..+|....+.| =+|++.+ .|.+.|. .+. ..|...|+.+..+.. ..+-..+.
T Consensus 98 ~~sGt~A~~~al~all~pG--D~Vl~~~-~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~~~~~~d~e~l~~~i~~~ 174 (427)
T 3hvy_A 98 FVNGTHAIGAALFGNLRPN--DTMMSIC-GMPYDTLHDIIGMDDSKKVGSLREYGVKYKMVDLKDGKVDINTVKEELKKD 174 (427)
T ss_dssp CCSHHHHHHHHHHHTCCTT--CEEEECS-SSCCGGGHHHHTCCTTCCSCCTGGGTCEEEECCCBTTBCCHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHHhcCCC--CEEEEeC-CCCchhHHHHhccccchhhhHHHHcCCEEEEecCCCCCcCHHHHHHHhhCC
Confidence 4444444444444443333 3566665 3444443 343 345667988877643 34444454
Q ss_pred -hccEEEEcceeEecCCCeecccch----HHHHHHHhh--CCCcEEE
Q 006577 522 -EVTRVFLGASSVLSNGTVCSRVGT----ACVAMVAYG--FHIPVLV 561 (640)
Q Consensus 522 -~VdkVlvGADaIlaNG~VvNKiGT----~~lAlaAk~--~~VPVyV 561 (640)
+..+|++.... |...|..|+ -.++-+|+. +++.++|
T Consensus 175 ~~tklV~i~~s~----gyp~nptg~v~dl~~i~~ia~~~~~g~~liv 217 (427)
T 3hvy_A 175 DSIKLIHIQRST----GYGWRKSLRIAEIAEIIKSIREVNENVIVFV 217 (427)
T ss_dssp TTEEEEEEESSC----CSSSSCCCCHHHHHHHHHHHHHHCSSSEEEE
T ss_pred CCCEEEEEECCC----CCCCCccccHHHHHHHHHHHHHhCCCCEEEE
Confidence 45555554322 334555555 356667888 8998887
No 372
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=23.73 E-value=33 Score=34.84 Aligned_cols=68 Identities=15% Similarity=0.123 Sum_probs=43.0
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEec---hH--HHHHhhhccEEEEcc
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI---NA--ISYIIHEVTRVFLGA 530 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D---sA--v~~iM~~VdkVlvGA 530 (640)
.+||..|....-..+...|++.| ++|+++|..|..-+..++ +-.|+.| .. .-.+.+++|.|+.+.
T Consensus 2 K~I~ilGgg~~g~~~~~~Ak~~G--~~vv~vd~~~~~~~~~~a--------D~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 71 (363)
T 4ffl_A 2 KTICLVGGKLQGFEAAYLSKKAG--MKVVLVDKNPQALIRNYA--------DEFYCFDVIKEPEKLLELSKRVDAVLPVN 71 (363)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCTTCTTTTTS--------SEEEECCTTTCHHHHHHHHTSSSEEEECC
T ss_pred CEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCCCChhHhhC--------CEEEECCCCcCHHHHHHHhcCCCEEEECC
Confidence 37888887766667778888766 688888988876544332 2222222 12 223345799998887
Q ss_pred eeE
Q 006577 531 SSV 533 (640)
Q Consensus 531 DaI 533 (640)
+.+
T Consensus 72 ~~~ 74 (363)
T 4ffl_A 72 ENL 74 (363)
T ss_dssp CCH
T ss_pred CCh
Confidence 643
No 373
>2r5f_A Transcriptional regulator, putative; transcription regulator, sugar-binding domain, structural GE PFAM04198, PSI-2; 2.10A {Pseudomonas syringae PV} SCOP: c.124.1.8
Probab=23.72 E-value=1.4e+02 Score=29.68 Aligned_cols=99 Identities=16% Similarity=0.204 Sum_probs=51.8
Q ss_pred HHHHHHhccCCCEEEeec-CcHHHHHHHHHHHHcC--C-eeEEEEcCC----CCCchHHHHHHHHHhC-CCceEEEech-
Q 006577 445 VKHAVTKIRDGDVLLTYG-SSSAVEMILQHAHELG--K-QFRVVIVDS----RPKHEGKLLLRRLVRK-GLSCTYTHIN- 514 (640)
Q Consensus 445 a~~a~~~I~dgdvILT~g-~SstV~~vL~~A~e~G--k-~f~ViV~ES----RP~~eG~~La~eL~~~-GI~vTlI~Ds- 514 (640)
+++..+.|+++++ |-.+ +.+++..+..+..+.. + +.+++-++. .|...-..|.+.|.+. |+++.++.-.
T Consensus 48 A~~l~~~l~~~~v-iGla~~G~T~~~~~~~l~~~~~~~~~v~~v~L~ggl~~~~~~~~~~~~~~la~~~~~~~~~l~~P~ 126 (264)
T 2r5f_A 48 AHYLETSLSAQDH-IGISSWSSTIRAMVSHMHPQPGKQSAQEVVQLLGGVGNKGAFEATLLTQRLATLLNCPAFLLPSQS 126 (264)
T ss_dssp HHHHHHHCCTTCE-EEECTTCHHHHHHHHTCCC--CCCCCSEEEECEECCC--CHHHHHHHHHHHHHHHTSCEECCCCC-
T ss_pred HHHHHHhCCCCCE-EEECcchHHHHHHHHhhccccCCCCCcEEEECCCCCCCccccCHHHHHHHHHHHhCCeeEEeeCCc
Confidence 3344556677664 5667 9999888887664322 3 566665542 2233334566777765 7766543221
Q ss_pred ---------------HHHHHh---hhccEEEEcceeEecCCCeecccch
Q 006577 515 ---------------AISYII---HEVTRVFLGASSVLSNGTVCSRVGT 545 (640)
Q Consensus 515 ---------------Av~~iM---~~VdkVlvGADaIlaNG~VvNKiGT 545 (640)
.+..++ .++|..|+|-=....||.+.| -|+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~l~~~~~~Di~l~GIG~~~~~~~i~~-~g~ 174 (264)
T 2r5f_A 127 IEQSVESKQRIVEMEEVKEVLHRFDSITLAIVGIGELEPSQLLRN-SGN 174 (264)
T ss_dssp ---------CCHHHHHHHHHHHHTTTCCEEEECCEECC-----------
T ss_pred ccCCHHHHHHHHcChHHHHHHHHHhcCCEEEEecCCCCCCccHhh-cCC
Confidence 112222 269999999877667788866 464
No 374
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=23.65 E-value=1.8e+02 Score=24.32 Aligned_cols=80 Identities=20% Similarity=0.351 Sum_probs=44.8
Q ss_pred CeeEEEEcCCCCCchHHHHHHHHHhCCCce--EEEechHHHH-Hhh--hccEEEEcceeEecCCCeecccchHHHHHHHh
Q 006577 479 KQFRVVIVDSRPKHEGKLLLRRLVRKGLSC--TYTHINAISY-IIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAY 553 (640)
Q Consensus 479 k~f~ViV~ESRP~~eG~~La~eL~~~GI~v--TlI~DsAv~~-iM~--~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk 553 (640)
...+|+|+|..+.. ...+...|...|..+ ....+..-+. .+. ..|.||+..+- .+ .-|.-.+..+-+
T Consensus 4 ~~~~ILivdd~~~~-~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~D~~l--~~-----~~g~~~~~~lr~ 75 (144)
T 3kht_A 4 RSKRVLVVEDNPDD-IALIRRVLDRKDIHCQLEFVDNGAKALYQVQQAKYDLIILDIGL--PI-----ANGFEVMSAVRK 75 (144)
T ss_dssp -CEEEEEECCCHHH-HHHHHHHHHHTTCCEEEEEESSHHHHHHHHTTCCCSEEEECTTC--GG-----GCHHHHHHHHHS
T ss_pred CCCEEEEEeCCHHH-HHHHHHHHHhcCCCeeEEEECCHHHHHHHhhcCCCCEEEEeCCC--CC-----CCHHHHHHHHHh
Confidence 35688888877653 233457777888873 3333322221 222 57888886542 22 224444444443
Q ss_pred ---hCCCcEEEecccc
Q 006577 554 ---GFHIPVLVCCEAY 566 (640)
Q Consensus 554 ---~~~VPVyV~aety 566 (640)
..++|+++++...
T Consensus 76 ~~~~~~~pii~~s~~~ 91 (144)
T 3kht_A 76 PGANQHTPIVILTDNV 91 (144)
T ss_dssp SSTTTTCCEEEEETTC
T ss_pred cccccCCCEEEEeCCC
Confidence 3579999987653
No 375
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Probab=23.63 E-value=4.2e+02 Score=24.57 Aligned_cols=106 Identities=12% Similarity=0.083 Sum_probs=61.2
Q ss_pred CCCEEEeecCcHHHHH-HHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEE-ec----hHHHHHhh------
Q 006577 454 DGDVLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT-HI----NAISYIIH------ 521 (640)
Q Consensus 454 dgdvILT~g~SstV~~-vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI-~D----sAv~~iM~------ 521 (640)
.|.+||..|-++.+-. +.+...++| .+|++++-++ .....+..+|...|-.+.++ +| ..+..++.
T Consensus 10 ~~~~vlVtGasggiG~~la~~l~~~G--~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 86 (255)
T 1fmc_A 10 DGKCAIITGAGAGIGKEIAITFATAG--ASVVVSDINA-DAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKL 86 (255)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHTTT--CEEEEEESCH-HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCC--CEEEEEcCCH-HHHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHhc
Confidence 4667888888766544 445555555 5777775443 23345557777777666654 23 23444444
Q ss_pred -hccEEEEcceeEecCCCe------------ecccchHHHHHHHh----hCCCcEEEec
Q 006577 522 -EVTRVFLGASSVLSNGTV------------CSRVGTACVAMVAY----GFHIPVLVCC 563 (640)
Q Consensus 522 -~VdkVlvGADaIlaNG~V------------vNKiGT~~lAlaAk----~~~VPVyV~a 563 (640)
++|.||--|-.. ..+.+ +|-.|++.+.-.+. ..+...+|..
T Consensus 87 ~~~d~vi~~Ag~~-~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~ 144 (255)
T 1fmc_A 87 GKVDILVNNAGGG-GPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTI 144 (255)
T ss_dssp SSCCEEEECCCCC-CCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCCEEEECCCCC-CCCCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 688888766322 22211 56778887776553 3355555543
No 376
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=23.52 E-value=1.5e+02 Score=25.23 Aligned_cols=58 Identities=19% Similarity=0.153 Sum_probs=36.0
Q ss_pred cCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCC-CCchHHHHHHHHHhC--CCceEEEech
Q 006577 453 RDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSR-PKHEGKLLLRRLVRK--GLSCTYTHIN 514 (640)
Q Consensus 453 ~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESR-P~~eG~~La~eL~~~--GI~vTlI~Ds 514 (640)
..|..|.+..+...+...+. +...|.++++|.. |...|..+++.|.+. .+++.+++..
T Consensus 25 ~~~~~v~~~~~~~~a~~~l~----~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~ 85 (151)
T 3kcn_A 25 SFDFEVTTCESGPEALACIK----KSDPFSVIMVDMRMPGMEGTEVIQKARLISPNSVYLMLTGN 85 (151)
T ss_dssp TTTSEEEEESSHHHHHHHHH----HSCCCSEEEEESCCSSSCHHHHHHHHHHHCSSCEEEEEECG
T ss_pred ccCceEEEeCCHHHHHHHHH----cCCCCCEEEEeCCCCCCcHHHHHHHHHhcCCCcEEEEEECC
Confidence 34555665555444433332 2345788887754 788999999888875 4566666543
No 377
>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A
Probab=23.46 E-value=3.7e+02 Score=27.24 Aligned_cols=74 Identities=12% Similarity=0.088 Sum_probs=46.1
Q ss_pred cCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEcce
Q 006577 453 RDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGAS 531 (640)
Q Consensus 453 ~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGAD 531 (640)
.+..+|+.+|........++.+.+...-.+|+|.+-.+ -.-..++.++...++++. . ++ ...++ ++|.|++..-
T Consensus 123 ~~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~-~~a~~la~~~~~~~~~~~-~-~~-~~e~v-~aDvVi~aTp 196 (322)
T 1omo_A 123 KNSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVRE-KAAKKFVSYCEDRGISAS-V-QP-AEEAS-RCDVLVTTTP 196 (322)
T ss_dssp TTCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSH-HHHHHHHHHHHHTTCCEE-E-CC-HHHHT-SSSEEEECCC
T ss_pred CCCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCH-HHHHHHHHHHHhcCceEE-E-CC-HHHHh-CCCEEEEeeC
Confidence 46678999998877666666555433334566665433 334566777766667665 3 33 33445 8999987643
No 378
>2qbu_A Precorrin-2 methyltransferase; HET: SAH; 2.10A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=23.43 E-value=2e+02 Score=27.33 Aligned_cols=48 Identities=15% Similarity=0.174 Sum_probs=32.1
Q ss_pred HHHHcCCeeEEEEcCCCCCc--hHHHHHHHHHhCCCceEEEe-chHHHHHhh
Q 006577 473 HAHELGKQFRVVIVDSRPKH--EGKLLLRRLVRKGLSCTYTH-INAISYIIH 521 (640)
Q Consensus 473 ~A~e~Gk~f~ViV~ESRP~~--eG~~La~eL~~~GI~vTlI~-DsAv~~iM~ 521 (640)
...++|++. |++..+.|.. -|..+.+.|.+.||++.+|+ .+++.++..
T Consensus 89 ~~~~~g~~V-~~l~~GDP~i~~~~~~l~~~~~~~gi~v~viPGiSs~~aa~a 139 (232)
T 2qbu_A 89 AELEDGRDV-AFITLGDPSIYSTFSYLQQRIEDMGFKTEMVPGVTSFTACAA 139 (232)
T ss_dssp HHHHTTCCE-EEEESBCTTBSCSHHHHHHHHHHTTCCEEEECCCCHHHHHHH
T ss_pred HHHHCCCeE-EEEeCCCCccchhHHHHHHHHHHCCCcEEEeCCccHHHHHHH
Confidence 333456654 5555688865 45667788888889888888 666655544
No 379
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}
Probab=23.34 E-value=4.4e+02 Score=26.69 Aligned_cols=99 Identities=12% Similarity=0.072 Sum_probs=52.5
Q ss_pred ccCCCEEEeecCcHHHH--HHHHHHHH--cC--------CeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEec------
Q 006577 452 IRDGDVLLTYGSSSAVE--MILQHAHE--LG--------KQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI------ 513 (640)
Q Consensus 452 I~dgdvILT~g~SstV~--~vL~~A~e--~G--------k~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D------ 513 (640)
+....+++|-|.+..+. .++..... .| ..-+|+|. .|.+.+.. ..+...|..+..+..
T Consensus 93 ~~~~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~~gd~V~v~--~p~y~~~~--~~~~~~g~~~~~v~~~~~g~d 168 (427)
T 3ppl_A 93 VPVEQVLAGDASSLNIMFDVISWSYIFGNNDSVQPWSKEETVKWICP--VPGYDRHF--SITERFGFEMISVPMNEDGPD 168 (427)
T ss_dssp SCGGGEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEE--ESCCHHHH--HHHHHTTCEEEEEEEETTEEC
T ss_pred CCcceEEEeCCcHHHHHHHHHHHHHhccCCcccccccCCCCCEEEEc--CCCcHHHH--HHHHHcCCEEEEeCCCCCCCC
Confidence 34457888888877763 34444333 21 13355554 36666543 344556887776642
Q ss_pred -hHHHHHhh--hccEEEEcceeEecCCCeecccch-------HHHHHHH-hhCCCcEEE
Q 006577 514 -NAISYIIH--EVTRVFLGASSVLSNGTVCSRVGT-------ACVAMVA-YGFHIPVLV 561 (640)
Q Consensus 514 -sAv~~iM~--~VdkVlvGADaIlaNG~VvNKiGT-------~~lAlaA-k~~~VPVyV 561 (640)
..+-..+. ++..| +-+...-|..|+ ..|+-+| +.|++.+++
T Consensus 169 ~~~l~~~l~~~~~~~v-------~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~ 220 (427)
T 3ppl_A 169 MDAVEELVKNPQVKGM-------WVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVW 220 (427)
T ss_dssp HHHHHHHTTSTTEEEE-------EECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEE
T ss_pred HHHHHHHHhcCCCeEE-------EECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEE
Confidence 22333332 23233 223334455554 2566677 889987665
No 380
>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*
Probab=23.31 E-value=1.9e+02 Score=28.45 Aligned_cols=94 Identities=14% Similarity=0.202 Sum_probs=48.6
Q ss_pred CEEEeecCcHHHHHHHHHH---HHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEech--------HHHHHhhhcc
Q 006577 456 DVLLTYGSSSAVEMILQHA---HELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN--------AISYIIHEVT 524 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A---~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds--------Av~~iM~~Vd 524 (640)
.+++|.|-+..+..++..+ .+.| -+|++. .|.+.+...+ +...|+.+.++... .+-..+.+-.
T Consensus 49 ~v~~~~ggt~al~~~~~~~~~~~~~g--d~Vl~~--~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~ 122 (375)
T 2fnu_A 49 HALVFNSATSALLTLYRNFSEFSADR--NEIITT--PISFVATANM--LLESGYTPVFAGIKNDGNIDELALEKLINERT 122 (375)
T ss_dssp EEEEESCHHHHHHHHHHHSSCCCTTS--CEEEEC--SSSCTHHHHH--HHHTTCEEEECCBCTTSSBCGGGSGGGCCTTE
T ss_pred eEEEeCCHHHHHHHHHHHhcccCCCC--CEEEEC--CCccHhHHHH--HHHCCCEEEEeccCCCCCCCHHHHHhhcCcCc
Confidence 5666655555565566554 3333 355554 4556554443 33468877776522 1111111112
Q ss_pred EEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 525 RVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 525 kVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
++|+-.+. .|.+.. --.|+-+|++|++.+++
T Consensus 123 ~~v~~~~~---tG~~~~---l~~i~~l~~~~~~~li~ 153 (375)
T 2fnu_A 123 KAIVSVDY---AGKSVE---VESVQKLCKKHSLSFLS 153 (375)
T ss_dssp EEEEEECG---GGCCCC---HHHHHHHHHHHTCEEEE
T ss_pred eEEEEeCC---cCCccC---HHHHHHHHHHcCCEEEE
Confidence 33332222 454433 25677788999998876
No 381
>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}
Probab=23.29 E-value=93 Score=29.35 Aligned_cols=81 Identities=11% Similarity=0.188 Sum_probs=42.8
Q ss_pred CCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEcceeEecCCCeec----ccchHHHHHHHh
Q 006577 478 GKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCS----RVGTACVAMVAY 553 (640)
Q Consensus 478 Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGADaIlaNG~VvN----KiGT~~lAlaAk 553 (640)
+++.+|.|++- +.+ =..+.+.|.+.|+.+.++.+.. -+.++|.+|++=- +..++. ..+...+-.-+.
T Consensus 18 ~~~~~I~ii~~-~~~-~~~~~~~l~~~g~~~~~~~~~~---~l~~~d~iil~GG----~~~~~~~~~~~~~~~~~i~~~~ 88 (208)
T 2iss_D 18 GSHMKIGVLGV-QGD-VREHVEALHKLGVETLIVKLPE---QLDMVDGLILPGG----ESTTMIRILKEMDMDEKLVERI 88 (208)
T ss_dssp --CCEEEEECS-SSC-HHHHHHHHHHTTCEEEEECSGG---GGGGCSEEEECSS----CHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCcEEEEEEC-CCc-hHHHHHHHHHCCCEEEEeCChH---HHhhCCEEEECCC----cHHHHHhhhhhhhHHHHHHHHH
Confidence 34567777764 332 1234577888999988887542 2457777766321 001111 111112222233
Q ss_pred hCCCcEEEeccccc
Q 006577 554 GFHIPVLVCCEAYK 567 (640)
Q Consensus 554 ~~~VPVyV~aetyK 567 (640)
..++|++-+|--+-
T Consensus 89 ~~g~PilGIC~G~Q 102 (208)
T 2iss_D 89 NNGLPVFATCAGVI 102 (208)
T ss_dssp HTTCCEEEETHHHH
T ss_pred HCCCeEEEECHHHH
Confidence 57999997775544
No 382
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=23.20 E-value=1.8e+02 Score=24.23 Aligned_cols=57 Identities=12% Similarity=0.129 Sum_probs=38.8
Q ss_pred EEEeecCcHHHHHHHHHHHHcCCeeEEEEcC-CCCCchHHHHHHHHHh-C--CCceEEEec
Q 006577 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVD-SRPKHEGKLLLRRLVR-K--GLSCTYTHI 513 (640)
Q Consensus 457 vILT~g~SstV~~vL~~A~e~Gk~f~ViV~E-SRP~~eG~~La~eL~~-~--GI~vTlI~D 513 (640)
.|.+..+...+...+......+..+.++++| .-|...|..+++.|.+ . .+++.+++.
T Consensus 29 ~v~~~~~~~~al~~~~~~~~~~~~~dlvllD~~mp~~~G~~~~~~lr~~~~~~~~ii~lt~ 89 (133)
T 2r25_B 29 NIELACDGQEAFDKVKELTSKGENYNMIFMDVQMPKVDGLLSTKMIRRDLGYTSPIVALTA 89 (133)
T ss_dssp CEEEESSHHHHHHHHHHHHHHTCCCSEEEECSCCSSSCHHHHHHHHHHHSCCCSCEEEEES
T ss_pred eEEEECCHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCChHHHHHHHHhhcCCCCCEEEEEC
Confidence 4666666555666665544445668888888 4588899999988876 2 466666654
No 383
>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1
Probab=23.18 E-value=83 Score=30.02 Aligned_cols=81 Identities=14% Similarity=0.117 Sum_probs=43.8
Q ss_pred eeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcE
Q 006577 480 QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPV 559 (640)
Q Consensus 480 ~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPV 559 (640)
..+|.+++....+ -..+++.|.+.|+.+.++....-..-+.++|.+||.=-. .|++........+.-.+...++|+
T Consensus 13 ~~~i~~id~~~~~-~~~~~~~l~~~G~~~~vv~~~~~~~~l~~~DglIl~GG~---p~~~~~~~~~~~l~~~~~~~~~Pi 88 (212)
T 2a9v_A 13 MLKIYVVDNGGQW-THREWRVLRELGVDTKIVPNDIDSSELDGLDGLVLSGGA---PNIDEELDKLGSVGKYIDDHNYPI 88 (212)
T ss_dssp CCBEEEEEESCCT-TCHHHHHHHHTTCBCCEEETTSCGGGGTTCSEEEEEEEC---SCGGGTGGGHHHHHHHHHHCCSCE
T ss_pred cceEEEEeCCCcc-HHHHHHHHHHCCCEEEEEeCCCCHHHHhCCCEEEECCCC---CCCCcccccchhHHHHHHhCCCCE
Confidence 3466666655555 234667888888888877743211123357877663210 223433212222223345789999
Q ss_pred EEecc
Q 006577 560 LVCCE 564 (640)
Q Consensus 560 yV~ae 564 (640)
+-+|-
T Consensus 89 LGIC~ 93 (212)
T 2a9v_A 89 LGICV 93 (212)
T ss_dssp EEETH
T ss_pred EEECh
Confidence 97664
No 384
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=23.16 E-value=2.3e+02 Score=24.24 Aligned_cols=80 Identities=14% Similarity=0.126 Sum_probs=46.4
Q ss_pred CeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHH-Hhh--hccEEEEcceeEecCCCeecccchHHHHHHHhh-
Q 006577 479 KQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISY-IIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYG- 554 (640)
Q Consensus 479 k~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~-iM~--~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~- 554 (640)
+..+|+|+|..+.. ...+...|.+.|+.|....+..-+. .+. ..|.||+..+ +.++ -|.-.+..+-+.
T Consensus 6 ~~~~ILivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlii~D~~--l~~~-----~g~~~~~~lr~~~ 77 (154)
T 3gt7_A 6 RAGEILIVEDSPTQ-AEHLKHILEETGYQTEHVRNGREAVRFLSLTRPDLIISDVL--MPEM-----DGYALCRWLKGQP 77 (154)
T ss_dssp -CCEEEEECSCHHH-HHHHHHHHHTTTCEEEEESSHHHHHHHHTTCCCSEEEEESC--CSSS-----CHHHHHHHHHHST
T ss_pred CCCcEEEEeCCHHH-HHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEEeCC--CCCC-----CHHHHHHHHHhCC
Confidence 45678888877653 2335577777888876665443322 222 5788888654 2222 244444444433
Q ss_pred --CCCcEEEecccc
Q 006577 555 --FHIPVLVCCEAY 566 (640)
Q Consensus 555 --~~VPVyV~aety 566 (640)
.++|+++++...
T Consensus 78 ~~~~~pii~~s~~~ 91 (154)
T 3gt7_A 78 DLRTIPVILLTILS 91 (154)
T ss_dssp TTTTSCEEEEECCC
T ss_pred CcCCCCEEEEECCC
Confidence 579999987543
No 385
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*
Probab=23.15 E-value=3.7e+02 Score=26.49 Aligned_cols=97 Identities=12% Similarity=0.060 Sum_probs=49.1
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEech---HHHHHhhhc---cEEEEc
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN---AISYIIHEV---TRVFLG 529 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds---Av~~iM~~V---dkVlvG 529 (640)
+.|++-+-+..+..++..+.+.| -.|++. .|.+.+. ...+...|..+..+... .+-..+.+. .++++-
T Consensus 101 ~~i~~~sGt~a~~~~~~~~~~~g--d~v~~~--~~~~~~~--~~~~~~~g~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~ 174 (384)
T 1bs0_A 101 RALLFISGFAANQAVIAAMMAKE--DRIAAD--RLSHASL--LEAASLSPSQLRRFAHNDVTHLARLLASPCPGQQMVVT 174 (384)
T ss_dssp EEEEESCHHHHHHHHHHHHCCTT--CEEEEE--TTCCHHH--HHHHHTSSSEEEEECTTCHHHHHHHHHSCCSSCEEEEE
T ss_pred cEEEeCCcHHHHHHHHHHhCCCC--cEEEEc--ccccHHH--HHHHHHcCCCEEEeCCCCHHHHHHHHHhcCCCCeEEEE
Confidence 34444333555555555443333 244433 3454432 23444568887777522 233334332 344432
Q ss_pred ceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 530 ASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 530 ADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
...-...|.+.. --.|+-+|++|++.+++
T Consensus 175 ~~~~nptG~~~~---l~~i~~l~~~~~~~li~ 203 (384)
T 1bs0_A 175 EGVFSMDGDSAP---LAEIQQVTQQHNGWLMV 203 (384)
T ss_dssp ESBCTTTCCBCC---HHHHHHHHHHTTCEEEE
T ss_pred eCCCCCCCCccC---HHHHHHHHHHcCcEEEE
Confidence 222233566655 35677789999997776
No 386
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}
Probab=23.06 E-value=6.4e+02 Score=26.63 Aligned_cols=103 Identities=15% Similarity=0.068 Sum_probs=53.6
Q ss_pred CCCEEEeecCcHHHHHHHHHHH--------HcCC----eeEEEEcCC-CCCchHHHHHHHHHhCCC-ceEEEec------
Q 006577 454 DGDVLLTYGSSSAVEMILQHAH--------ELGK----QFRVVIVDS-RPKHEGKLLLRRLVRKGL-SCTYTHI------ 513 (640)
Q Consensus 454 dgdvILT~g~SstV~~vL~~A~--------e~Gk----~f~ViV~ES-RP~~eG~~La~eL~~~GI-~vTlI~D------ 513 (640)
.+..++|-|-|..++..|..+. +.|. +..|++.+. .+... -+..+...|. .+..+.-
T Consensus 165 ~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s~~---~~~~~~g~g~~~v~~v~~~~~~~~ 241 (515)
T 2jis_A 165 SGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQ---KGAAFLGLGTDSVRVVKADERGKM 241 (515)
T ss_dssp SCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHH---HHHHHTTSCGGGEEEECBCTTSCB
T ss_pred CCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCccHHHH---HHHHHcCCCCCcEEEEecCCCCcC
Confidence 4567888777766666666553 1353 457777763 33222 2222222333 7777652
Q ss_pred --hHHHHHhhh------ccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEe
Q 006577 514 --NAISYIIHE------VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (640)
Q Consensus 514 --sAv~~iM~~------VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~ 562 (640)
.++-..+.+ ..++|+....-...|.+. . --.|+-+|++||+.|+|=
T Consensus 242 d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~-~--l~~I~~la~~~g~~l~vD 295 (515)
T 2jis_A 242 VPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFD-P--LEAIADVCQRHGLWLHVD 295 (515)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBC-C--HHHHHHHHHHHTCEEEEE
T ss_pred CHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCcc-C--HHHHHHHHHHcCCeEEEe
Confidence 223333333 133443322212234443 2 346778899999999873
No 387
>1wta_A 5'-methylthioadenosine phosphorylase; A/B structure, transferase; HET: ADE; 1.78A {Aeropyrum pernix}
Probab=23.05 E-value=2.3e+02 Score=28.39 Aligned_cols=73 Identities=10% Similarity=-0.016 Sum_probs=42.8
Q ss_pred cCcHHHHHHHHH-HHHcCCeeE---EEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEcceeEecCC
Q 006577 462 GSSSAVEMILQH-AHELGKQFR---VVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNG 537 (640)
Q Consensus 462 g~SstV~~vL~~-A~e~Gk~f~---ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGADaIlaNG 537 (640)
.++..+...+.+ |.+.|.+++ ||+.-+.|.++-..-.+.|.+ + +|||+|=..
T Consensus 141 ~~d~~L~~~l~~~a~~~g~~~~~~Gv~~~~~Gp~f~t~ae~~~~~~------------------~-----~GadaV~Me- 196 (275)
T 1wta_A 141 PFCEDLRQRLIDSGRRLGYTVHERGTYVCIEGPRFSTRAESRVWKD------------------V-----FKADIIGMT- 196 (275)
T ss_dssp CSCHHHHHHHHHHHHHHTCCEESCCEEEEECCSSCCCHHHHHHHHH------------------T-----SCCSEEESS-
T ss_pred ccCHHHHHHHHHHHHHcCCceecceEEEEecCCEecCHHHHHHHHH------------------H-----cCCEEEccc-
Confidence 345555444444 334455544 566667777764322233320 1 156665444
Q ss_pred CeecccchHHHHHHHhhCCCcEEEeccc
Q 006577 538 TVCSRVGTACVAMVAYGFHIPVLVCCEA 565 (640)
Q Consensus 538 ~VvNKiGT~~lAlaAk~~~VPVyV~aet 565 (640)
|..++.+|+++++||.+++--
T Consensus 197 -------~a~ea~vA~~~gi~~~~i~~V 217 (275)
T 1wta_A 197 -------LVPEINLACEAQLCYATLAMV 217 (275)
T ss_dssp -------HHHHHHHHHHTTCEEEEEEEE
T ss_pred -------HHHHHHHHHHCCCCEEEEEEE
Confidence 578999999999999987544
No 388
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=23.03 E-value=1.7e+02 Score=28.35 Aligned_cols=70 Identities=17% Similarity=0.259 Sum_probs=40.9
Q ss_pred EEEeecCcHHHHHHHHHHHHcCC-eeEEEEcC-CCCCchHHHHHHHHHhCCCceEEEec----------hHHHHHhh--h
Q 006577 457 VLLTYGSSSAVEMILQHAHELGK-QFRVVIVD-SRPKHEGKLLLRRLVRKGLSCTYTHI----------NAISYIIH--E 522 (640)
Q Consensus 457 vILT~g~SstV~~vL~~A~e~Gk-~f~ViV~E-SRP~~eG~~La~eL~~~GI~vTlI~D----------sAv~~iM~--~ 522 (640)
.||.-|+.+.++.++. +.++|. .++|.++= .+|...|.+.| .+.||++.++.. ..+...++ +
T Consensus 4 aVl~SG~Gs~L~aLi~-~~~~~~~~~~I~~Vvs~~~~~~~~~~A---~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~ 79 (209)
T 1meo_A 4 AVLISGTGSNLQALID-STREPNSSAQIDIVISNKAAVAGLDKA---ERAGIPTRVINHKLYKNRVEFDSAIDLVLEEFS 79 (209)
T ss_dssp EEEESSSCTTHHHHHH-HHHSTTCSCEEEEEEESSTTCHHHHHH---HHTTCCEEECCGGGSSSHHHHHHHHHHHHHHTT
T ss_pred EEEEECCchHHHHHHH-HHhcCCCCcEEEEEEeCCCChHHHHHH---HHcCCCEEEECccccCchhhhhHHHHHHHHhcC
Confidence 4666666666666665 444443 45554443 34455665433 567999987642 33444454 5
Q ss_pred ccEEEEcc
Q 006577 523 VTRVFLGA 530 (640)
Q Consensus 523 VdkVlvGA 530 (640)
+|.+|+.+
T Consensus 80 ~Dliv~a~ 87 (209)
T 1meo_A 80 IDIVCLAG 87 (209)
T ss_dssp CCEEEEES
T ss_pred CCEEEEcc
Confidence 78887654
No 389
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=23.00 E-value=1.7e+02 Score=24.10 Aligned_cols=84 Identities=12% Similarity=0.013 Sum_probs=42.7
Q ss_pred eeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHH-HHhh--hccEEEEcceeEecCCCeecccchHHHHHHHh-hC
Q 006577 480 QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAIS-YIIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAY-GF 555 (640)
Q Consensus 480 ~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~-~iM~--~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk-~~ 555 (640)
..+|+|+|..+.. ...+...|...|+.|....+..-+ ..+. ..|.||+..+- ..+..-..-|.-.+..+-+ ..
T Consensus 3 ~~~ilivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~~--~~~~~~~~~g~~~~~~l~~~~~ 79 (140)
T 2qr3_A 3 LGTIIIVDDNKGV-LTAVQLLLKNHFSKVITLSSPVSLSTVLREENPEVVLLDMNF--TSGINNGNEGLFWLHEIKRQYR 79 (140)
T ss_dssp CCEEEEECSCHHH-HHHHHHHHTTTSSEEEEECCHHHHHHHHHHSCEEEEEEETTT--TC-----CCHHHHHHHHHHHCT
T ss_pred CceEEEEeCCHHH-HHHHHHHHHhCCcEEEEeCCHHHHHHHHHcCCCCEEEEeCCc--CCCCCCCccHHHHHHHHHhhCc
Confidence 3567777766543 233456677778877755443221 2222 46888776532 1000001123333333333 34
Q ss_pred CCcEEEecccc
Q 006577 556 HIPVLVCCEAY 566 (640)
Q Consensus 556 ~VPVyV~aety 566 (640)
++|+++++...
T Consensus 80 ~~~ii~ls~~~ 90 (140)
T 2qr3_A 80 DLPVVLFTAYA 90 (140)
T ss_dssp TCCEEEEEEGG
T ss_pred CCCEEEEECCC
Confidence 89999987653
No 390
>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A
Probab=22.78 E-value=3.8e+02 Score=26.07 Aligned_cols=108 Identities=13% Similarity=0.002 Sum_probs=58.3
Q ss_pred CCEEEeecCcHHHHH-HHHHHHHcCCeeEEEEcCCCCCc-hHHHHHHHHHhCCCceEEE-ec----hHHHHHhhhccEEE
Q 006577 455 GDVLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKH-EGKLLLRRLVRKGLSCTYT-HI----NAISYIIHEVTRVF 527 (640)
Q Consensus 455 gdvILT~g~SstV~~-vL~~A~e~Gk~f~ViV~ESRP~~-eG~~La~eL~~~GI~vTlI-~D----sAv~~iM~~VdkVl 527 (640)
+.+||..|-++.+=. +++.+.++|- +|+++.-++.. +-......|.. +-.+.++ .| ..+..++..+|.||
T Consensus 9 ~~~vlVTGatGfIG~~l~~~Ll~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~D~Vi 85 (338)
T 2rh8_A 9 KKTACVVGGTGFVASLLVKLLLQKGY--AVNTTVRDPDNQKKVSHLLELQE-LGDLKIFRADLTDELSFEAPIAGCDFVF 85 (338)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHTTC--EEEEEESCTTCTTTTHHHHHHGG-GSCEEEEECCTTTSSSSHHHHTTCSEEE
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCC--EEEEEEcCcchhhhHHHHHhcCC-CCcEEEEecCCCChHHHHHHHcCCCEEE
Confidence 568899898877644 4455566664 45543222221 11111123321 1123333 22 34566778899999
Q ss_pred EcceeEe---cC----CCeecccchHHHHHHHhhCC-CcEEEeccc
Q 006577 528 LGASSVL---SN----GTVCSRVGTACVAMVAYGFH-IPVLVCCEA 565 (640)
Q Consensus 528 vGADaIl---aN----G~VvNKiGT~~lAlaAk~~~-VPVyV~aet 565 (640)
--|-.+. .+ ---.|-.||..+.-+|+.++ +.-+|.+.+
T Consensus 86 h~A~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~r~V~~SS 131 (338)
T 2rh8_A 86 HVATPVHFASEDPENDMIKPAIQGVVNVMKACTRAKSVKRVILTSS 131 (338)
T ss_dssp EESSCCCC---------CHHHHHHHHHHHHHHHHCTTCCEEEEECC
T ss_pred EeCCccCCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCcCEEEEEec
Confidence 7553221 01 11136789999998888885 765655444
No 391
>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1
Probab=22.78 E-value=2.1e+02 Score=28.79 Aligned_cols=54 Identities=19% Similarity=0.201 Sum_probs=34.2
Q ss_pred hccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEE
Q 006577 451 KIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT 511 (640)
Q Consensus 451 ~I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI 511 (640)
.+..|++||.+|.++.=..++..|+..|- +|++++..+. -.+++ .+.|.+.++-
T Consensus 165 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga--~Vi~~~~~~~--~~~~~---~~lGa~~~~~ 218 (352)
T 1e3j_A 165 GVQLGTTVLVIGAGPIGLVSVLAAKAYGA--FVVCTARSPR--RLEVA---KNCGADVTLV 218 (352)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTC--EEEEEESCHH--HHHHH---HHTTCSEEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC--EEEEEcCCHH--HHHHH---HHhCCCEEEc
Confidence 46789999999975443445566666664 4888876543 22333 4568775543
No 392
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}
Probab=22.72 E-value=2.2e+02 Score=26.66 Aligned_cols=98 Identities=7% Similarity=0.089 Sum_probs=53.1
Q ss_pred CEEEeecCcHHHHH-HHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEE--e-chHHHHHhhhccEEEEcce
Q 006577 456 DVLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT--H-INAISYIIHEVTRVFLGAS 531 (640)
Q Consensus 456 dvILT~g~SstV~~-vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI--~-DsAv~~iM~~VdkVlvGAD 531 (640)
.+||..|-++.+=. +.+.+.++| .++|+++.-++... ..+...++.+... . ...+..++..+|.||.-|
T Consensus 24 k~vlVtGatG~iG~~l~~~L~~~G-~~~V~~~~R~~~~~-----~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~~a- 96 (236)
T 3qvo_A 24 KNVLILGAGGQIARHVINQLADKQ-TIKQTLFARQPAKI-----HKPYPTNSQIIMGDVLNHAALKQAMQGQDIVYANL- 96 (236)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTCT-TEEEEEEESSGGGS-----CSSCCTTEEEEECCTTCHHHHHHHHTTCSEEEEEC-
T ss_pred cEEEEEeCCcHHHHHHHHHHHhCC-CceEEEEEcChhhh-----cccccCCcEEEEecCCCHHHHHHHhcCCCEEEEcC-
Confidence 57888898776654 445555555 26777765443210 1112223322211 1 235666777888887543
Q ss_pred eEecCCCeecccchHHHHHHHhhCCCcEEEeccc
Q 006577 532 SVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEA 565 (640)
Q Consensus 532 aIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~aet 565 (640)
|..-...++-.+.-+++..++.-+|...+
T Consensus 97 -----~~~~~~~~~~~~~~~~~~~~~~~iV~iSS 125 (236)
T 3qvo_A 97 -----TGEDLDIQANSVIAAMKACDVKRLIFVLS 125 (236)
T ss_dssp -----CSTTHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred -----CCCchhHHHHHHHHHHHHcCCCEEEEEec
Confidence 11112245666667788888876665444
No 393
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=22.60 E-value=2.8e+02 Score=24.89 Aligned_cols=80 Identities=14% Similarity=0.096 Sum_probs=46.2
Q ss_pred CeeEEEEcCCCCCchHHHHHHHHHhCCCceE-EEechHHHH-Hhh--hccEEEEcceeEecCCCeecccchHHHHHHHhh
Q 006577 479 KQFRVVIVDSRPKHEGKLLLRRLVRKGLSCT-YTHINAISY-IIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYG 554 (640)
Q Consensus 479 k~f~ViV~ESRP~~eG~~La~eL~~~GI~vT-lI~DsAv~~-iM~--~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~ 554 (640)
...+|+|+|..|... ..+...|...|+.|. ...+..-+. .+. ..|.||+..+ +.+. -|.-.+..+-+.
T Consensus 12 m~~~iLivdd~~~~~-~~l~~~L~~~g~~v~~~~~~~~~al~~~~~~~~dlvi~D~~--~p~~-----~g~~~~~~l~~~ 83 (205)
T 1s8n_A 12 VPRRVLIAEDEALIR-MDLAEMLREEGYEIVGEAGDGQEAVELAELHKPDLVIMDVK--MPRR-----DGIDAASEIASK 83 (205)
T ss_dssp CCCEEEEECSSHHHH-HHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCCSEEEEESS--CSSS-----CHHHHHHHHHHT
T ss_pred CCccEEEEECCHHHH-HHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcCCCEEEEeCC--CCCC-----ChHHHHHHHHhc
Confidence 346888888877532 234466777888877 343332221 222 5788888643 2222 244444455555
Q ss_pred CCCcEEEecccc
Q 006577 555 FHIPVLVCCEAY 566 (640)
Q Consensus 555 ~~VPVyV~aety 566 (640)
+..||++++...
T Consensus 84 ~~~pii~lt~~~ 95 (205)
T 1s8n_A 84 RIAPIVVLTAFS 95 (205)
T ss_dssp TCSCEEEEEEGG
T ss_pred CCCCEEEEecCC
Confidence 667999887654
No 394
>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2
Probab=22.53 E-value=2.1e+02 Score=27.41 Aligned_cols=104 Identities=13% Similarity=0.143 Sum_probs=57.4
Q ss_pred EEEeecCcHHHHH-HHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhh-----ccEEEEcc
Q 006577 457 VLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHE-----VTRVFLGA 530 (640)
Q Consensus 457 vILT~g~SstV~~-vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~-----VdkVlvGA 530 (640)
+||..|-++.+-. +++.+.++|. .+|+++...+...- ...|....+.+-+-....+..++.. +|.||--|
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~---~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~a 76 (310)
T 1eq2_A 1 MIIVTGGAGFIGSNIVKALNDKGI-TDILVVDNLKDGTK---FVNLVDLNIADYMDKEDFLIQIMAGEEFGDVEAIFHEG 76 (310)
T ss_dssp CEEEETTTSHHHHHHHHHHHTTTC-CCEEEEECCSSGGG---GHHHHTSCCSEEEEHHHHHHHHHTTCCCSSCCEEEECC
T ss_pred CEEEEcCccHHHHHHHHHHHHCCC-cEEEEEccCCCCch---hhhcCcceeccccccHHHHHHHHhccccCCCcEEEECc
Confidence 3677788776644 4455555551 45666654433211 1122222244444444556666664 88888765
Q ss_pred eeEecC-CC-----eecccchHHHHHHHhhCCCcEEEecc
Q 006577 531 SSVLSN-GT-----VCSRVGTACVAMVAYGFHIPVLVCCE 564 (640)
Q Consensus 531 DaIlaN-G~-----VvNKiGT~~lAlaAk~~~VPVyV~ae 564 (640)
-..... .+ -+|-.||..+.-+|+.+++.|+.++.
T Consensus 77 ~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS 116 (310)
T 1eq2_A 77 ACSSTTEWDGKYMMDNNYQYSKELLHYCLEREIPFLYASS 116 (310)
T ss_dssp SCCCTTCCCHHHHHHHTHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred ccccCcccCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEee
Confidence 432210 01 13667899999889888885555543
No 395
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0
Probab=22.52 E-value=3.7e+02 Score=26.65 Aligned_cols=39 Identities=10% Similarity=-0.001 Sum_probs=25.2
Q ss_pred hccEEEEcceeEecCCCeecccc-hHHHHHHHhhCCCcEEE
Q 006577 522 EVTRVFLGASSVLSNGTVCSRVG-TACVAMVAYGFHIPVLV 561 (640)
Q Consensus 522 ~VdkVlvGADaIlaNG~VvNKiG-T~~lAlaAk~~~VPVyV 561 (640)
++..|++-. .--..|.+...-. --.|+-+|++|++.+++
T Consensus 182 ~~~~v~~~~-~~nptG~~~~~~~~l~~i~~l~~~~~~~li~ 221 (392)
T 3ruy_A 182 NTAAFILEP-IQGEAGINIPPAGFLKEALEVCKKENVLFVA 221 (392)
T ss_dssp TEEEEEECS-SBSTTTSBCCCTTHHHHHHHHHHTTTCEEEE
T ss_pred CeEEEEEeC-ccCCCCCccCCHHHHHHHHHHHHHcCCEEEE
Confidence 444555533 2223466666666 66778899999998887
No 396
>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*
Probab=22.48 E-value=1.3e+02 Score=28.88 Aligned_cols=94 Identities=12% Similarity=0.127 Sum_probs=53.6
Q ss_pred EEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhh--ccEEEEcceeEe
Q 006577 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHE--VTRVFLGASSVL 534 (640)
Q Consensus 457 vILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~--VdkVlvGADaIl 534 (640)
+||..|-++.+-..|.....+| .+|+++.-++. .+.+-+.....+..++.. +|.||--|-...
T Consensus 2 ~ilVtGatG~iG~~l~~~L~~g--~~V~~~~r~~~-------------~~~~D~~d~~~~~~~~~~~~~d~vih~a~~~~ 66 (299)
T 1n2s_A 2 NILLFGKTGQVGWELQRSLAPV--GNLIALDVHSK-------------EFCGDFSNPKGVAETVRKLRPDVIVNAAAHTA 66 (299)
T ss_dssp EEEEECTTSHHHHHHHHHTTTT--SEEEEECTTCS-------------SSCCCTTCHHHHHHHHHHHCCSEEEECCCCCC
T ss_pred eEEEECCCCHHHHHHHHHhhcC--CeEEEeccccc-------------cccccCCCHHHHHHHHHhcCCCEEEECcccCC
Confidence 5777788777655443333234 67777765441 122222222345555665 888876653221
Q ss_pred c---CCC-----eecccchHHHHHHHhhCCCcEEEeccc
Q 006577 535 S---NGT-----VCSRVGTACVAMVAYGFHIPVLVCCEA 565 (640)
Q Consensus 535 a---NG~-----VvNKiGT~~lAlaAk~~~VPVyV~aet 565 (640)
. ... -+|-.||..+.-+|+.+++.|+.++..
T Consensus 67 ~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS~ 105 (299)
T 1n2s_A 67 VDKAESEPELAQLLNATSVEAIAKAANETGAWVVHYSTD 105 (299)
T ss_dssp HHHHTTCHHHHHHHHTHHHHHHHHHHTTTTCEEEEEEEG
T ss_pred HhhhhcCHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecc
Confidence 0 011 246789999999999999876655443
No 397
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=22.48 E-value=2.5e+02 Score=28.65 Aligned_cols=75 Identities=12% Similarity=0.157 Sum_probs=46.6
Q ss_pred cCCeeEEEEcCCCCCchHHHHHHHHHhCCCce---------EEEec--hHHHHHhhhccEEEEcceeEecCCCeecccch
Q 006577 477 LGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSC---------TYTHI--NAISYIIHEVTRVFLGASSVLSNGTVCSRVGT 545 (640)
Q Consensus 477 ~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~v---------TlI~D--sAv~~iM~~VdkVlvGADaIlaNG~VvNKiGT 545 (640)
+..+++++++-..|.. ...+...+.+.|+.. .++.| .-+..+|..+|.++++.... ..|+.
T Consensus 222 ~~p~~~lvivG~g~~~-~~~l~~~~~~~gl~~~~~~~~~~~v~~~~~~~dl~~~y~~aDv~vl~ss~~-e~gg~------ 293 (374)
T 2xci_A 222 TYSSLKLILVPRHIEN-AKIFEKKARDFGFKTSFFENLEGDVILVDRFGILKELYPVGKIAIVGGTFV-NIGGH------ 293 (374)
T ss_dssp TCTTCEEEEEESSGGG-HHHHHHHHHHTTCCEEETTCCCSSEEECCSSSCHHHHGGGEEEEEECSSSS-SSCCC------
T ss_pred hCCCcEEEEECCCHHH-HHHHHHHHHHCCCceEEecCCCCcEEEECCHHHHHHHHHhCCEEEECCccc-CCCCc------
Confidence 3456777777544432 234555666778763 35555 67888999999988875322 22221
Q ss_pred HHHHHHHhhCCCcEEE
Q 006577 546 ACVAMVAYGFHIPVLV 561 (640)
Q Consensus 546 ~~lAlaAk~~~VPVyV 561 (640)
..+=|-..|+||++
T Consensus 294 --~~lEAmA~G~PVI~ 307 (374)
T 2xci_A 294 --NLLEPTCWGIPVIY 307 (374)
T ss_dssp --CCHHHHTTTCCEEE
T ss_pred --CHHHHHHhCCCEEE
Confidence 13456678999986
No 398
>3n8i_A Low molecular weight phosphotyrosine protein PHOS; tyrosine phosphatase, hydrolase, protein-ligand complex; HET: NLA; 1.50A {Homo sapiens} SCOP: c.44.1.1 PDB: 5pnt_A* 1xww_A 1bvh_A 1dg9_A* 1phr_A 1pnt_A 1z12_A 1z13_A 1c0e_A 2p4u_A
Probab=22.44 E-value=97 Score=28.64 Aligned_cols=75 Identities=11% Similarity=0.021 Sum_probs=48.9
Q ss_pred EEEee-----cCcHHHHHHHHHHHH-cCC--eeEEEEcCCCCCchH----HHHHHHHHhCCCceEEEechHHHHHhhhcc
Q 006577 457 VLLTY-----GSSSAVEMILQHAHE-LGK--QFRVVIVDSRPKHEG----KLLLRRLVRKGLSCTYTHINAISYIIHEVT 524 (640)
Q Consensus 457 vILT~-----g~SstV~~vL~~A~e-~Gk--~f~ViV~ESRP~~eG----~~La~eL~~~GI~vTlI~DsAv~~iM~~Vd 524 (640)
.||.. |+|..++.++++... .|. .|.|.-.-+.++..| .+....|.+.||+.....-.--...+...|
T Consensus 7 ~vLFVC~gN~cRSpmAE~~~~~~~~~~gl~~~~~v~SAGt~~~~~G~~~~~~a~~~l~~~Gid~~~~ar~l~~~~~~~~D 86 (157)
T 3n8i_A 7 SVLFVCLGNICRSPIAEAVFRKLVTDQNISENWRVDSAATSGYEIGNPPDYRGQSCMKRHGIPMSHVARQITKEDFATFD 86 (157)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHTTCGGGEEEEEEESSSTTTTCCCCHHHHHHHHHTTCCCCCCCCBCCHHHHHHCS
T ss_pred EEEEECCCchhHHHHHHHHHHHHHHHcCCCCcEEEEeeecCccccCCCCCHHHHHHHHHcCcCCCCceeECCHHHcCCCC
Confidence 45654 567889999988654 454 588888888887655 344588999999863222111123445788
Q ss_pred EEEEcce
Q 006577 525 RVFLGAS 531 (640)
Q Consensus 525 kVlvGAD 531 (640)
.||.=.+
T Consensus 87 lIi~M~~ 93 (157)
T 3n8i_A 87 YILCMDE 93 (157)
T ss_dssp EEEESSH
T ss_pred EEEEeCc
Confidence 8865443
No 399
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=22.44 E-value=5.9e+02 Score=25.71 Aligned_cols=55 Identities=15% Similarity=0.134 Sum_probs=31.6
Q ss_pred CCeeEEEEcCCC-CCchHHHHHHHHHh-CCCceEEEec---------hHHHHHhh---hccEEEEccee
Q 006577 478 GKQFRVVIVDSR-PKHEGKLLLRRLVR-KGLSCTYTHI---------NAISYIIH---EVTRVFLGASS 532 (640)
Q Consensus 478 Gk~f~ViV~ESR-P~~eG~~La~eL~~-~GI~vTlI~D---------sAv~~iM~---~VdkVlvGADa 532 (640)
+..+.|+.+++. ..-+-..++.++.+ .|+++..+.- .++-.+++ ..+.+|+|.-+
T Consensus 99 ~~~i~vv~iDtg~~fpet~~fv~~~~~~ygl~l~v~~~~~~~~~~l~~~~~~~~k~~p~~~aii~G~Rr 167 (306)
T 2wsi_A 99 MQRLPTVFIDQEETFPTLENFVLETSERYCLSLYESQRQSGASVNMADAFRDFIKIYPETEAIVIGIRH 167 (306)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHHHHTTEEEEECCC-----CCHHHHHHHHHHHCTTCCEEECCCCC
T ss_pred CCCeeEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCccccccHHHHHHHHHhhCCCCcEEEEEEec
Confidence 456777766654 44456677766654 6988876642 23333333 35677777533
No 400
>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*
Probab=22.43 E-value=1.6e+02 Score=31.30 Aligned_cols=74 Identities=26% Similarity=0.373 Sum_probs=44.3
Q ss_pred eeEEEEcCCCCCchHHHHHHHHHhCCCceEEEech-HHHHHhh-hccEEEEcceeEecCCC-eecccchHHHHHHHh--h
Q 006577 480 QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN-AISYIIH-EVTRVFLGASSVLSNGT-VCSRVGTACVAMVAY--G 554 (640)
Q Consensus 480 ~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds-Av~~iM~-~VdkVlvGADaIlaNG~-VvNKiGT~~lAlaAk--~ 554 (640)
.++|.++|--- ...+.+.|.+.|+.++++.-. ....+.. ++|.||| +||- -.... ...+.++-+ .
T Consensus 190 ~~~V~viD~G~---k~ni~r~L~~~G~~v~vvp~~~~~e~i~~~~~DGliL------sGGPgdp~~~-~~~~~~Ir~~~~ 259 (379)
T 1a9x_B 190 PFHVVAYDFGA---KRNILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIFL------SNGPGDPAPC-DYAITAIQKFLE 259 (379)
T ss_dssp CEEEEEEESSC---CHHHHHHHHHTTEEEEEEETTCCHHHHHTTCCSEEEE------CCCSBCSTTC-HHHHHHHHHHTT
T ss_pred CCEEEEEECCC---hHHHHHHHHHCCCEEEEEeccCCHHHHhhcCCCEEEE------eCCCCChHHH-HHHHHHHHHHHH
Confidence 46888888622 256789999999999998632 2333333 5788866 2331 11121 234444433 3
Q ss_pred CCCcEEEec
Q 006577 555 FHIPVLVCC 563 (640)
Q Consensus 555 ~~VPVyV~a 563 (640)
.++|++-+|
T Consensus 260 ~~~PILGIC 268 (379)
T 1a9x_B 260 TDIPVFGIC 268 (379)
T ss_dssp SCCCEEEET
T ss_pred cCCCEEEEC
Confidence 479999665
No 401
>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}
Probab=22.41 E-value=1.2e+02 Score=30.05 Aligned_cols=94 Identities=14% Similarity=0.152 Sum_probs=47.1
Q ss_pred CEEEeecCcHHHHHHHHHH-HHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEech---------HHHHHhhhccE
Q 006577 456 DVLLTYGSSSAVEMILQHA-HELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN---------AISYIIHEVTR 525 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A-~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds---------Av~~iM~~Vdk 525 (640)
.+|+|-+-+..+..+|..+ ...| -+|++. .|.+.+.. ..+...|+.+.++... .+-..+.+=.+
T Consensus 53 ~~i~~~sgt~al~~~l~~l~~~~g--d~Vi~~--~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~~~ 126 (373)
T 3frk_A 53 YCIGCGNGLDALHLILKGYDIGFG--DEVIVP--SNTFIATA--LAVSYTGAKPIFVEPDIRTYNIDPSLIESAITEKTK 126 (373)
T ss_dssp EEEEESCHHHHHHHHHHHTTCCTT--CEEEEE--TTSCTHHH--HHHHHHSCEEEEECEETTTTEECGGGTGGGCCTTEE
T ss_pred eEEEeCCHHHHHHHHHHHcCCCCc--CEEEEC--CCCcHHHH--HHHHHcCCEEEEEeccccccCcCHHHHHHhcCCCCe
Confidence 5666655555555555544 3333 355554 34555533 2345568777766532 11122222123
Q ss_pred EEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 526 VFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 526 VlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
+|+ ..-..|.+.. --.|+-+|+.|++.|++
T Consensus 127 ~v~---~~n~~G~~~~---l~~i~~l~~~~~~~li~ 156 (373)
T 3frk_A 127 AII---AVHLYGQPAD---MDEIKRIAKKYNLKLIE 156 (373)
T ss_dssp EEE---EECCTTCCCC---HHHHHHHHHHHTCEEEE
T ss_pred EEE---EECCCcCccc---HHHHHHHHHHcCCEEEE
Confidence 333 1223443221 24677789999998887
No 402
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=22.38 E-value=2.1e+02 Score=23.19 Aligned_cols=79 Identities=13% Similarity=0.104 Sum_probs=45.1
Q ss_pred eeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHH-Hhh--hccEEEEcceeEecCCCeecccchHHHHHHHh---
Q 006577 480 QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISY-IIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAY--- 553 (640)
Q Consensus 480 ~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~-iM~--~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk--- 553 (640)
..+|+|+|..+.. ...+...|.+.|+.|....+..-+. .+. ..|.||+..+- .+ .-|.-.+..+-+
T Consensus 3 ~~~ilivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~D~~l--~~-----~~g~~~~~~l~~~~~ 74 (127)
T 3i42_A 3 LQQALIVEDYQAA-AETFKELLEMLGFQADYVMSGTDALHAMSTRGYDAVFIDLNL--PD-----TSGLALVKQLRALPM 74 (127)
T ss_dssp CEEEEEECSCHHH-HHHHHHHHHHTTEEEEEESSHHHHHHHHHHSCCSEEEEESBC--SS-----SBHHHHHHHHHHSCC
T ss_pred cceEEEEcCCHHH-HHHHHHHHHHcCCCEEEECCHHHHHHHHHhcCCCEEEEeCCC--CC-----CCHHHHHHHHHhhhc
Confidence 3577777776653 2334567777788777665443222 222 57888887542 22 224444444444
Q ss_pred hCCCcEEEecccc
Q 006577 554 GFHIPVLVCCEAY 566 (640)
Q Consensus 554 ~~~VPVyV~aety 566 (640)
..++|+++++...
T Consensus 75 ~~~~~ii~~s~~~ 87 (127)
T 3i42_A 75 EKTSKFVAVSGFA 87 (127)
T ss_dssp SSCCEEEEEECC-
T ss_pred cCCCCEEEEECCc
Confidence 3579999987654
No 403
>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*
Probab=22.34 E-value=1.8e+02 Score=28.89 Aligned_cols=106 Identities=13% Similarity=0.181 Sum_probs=57.9
Q ss_pred CCEEEeecCcHHHHH-HHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhh-----hccEEEE
Q 006577 455 GDVLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIH-----EVTRVFL 528 (640)
Q Consensus 455 gdvILT~g~SstV~~-vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~-----~VdkVlv 528 (640)
+.+||..|-++.+-. +++.+.++|. .+|+++...+.... ...|....+.+-+-....+..++. ++|.||-
T Consensus 46 ~~~vlVtGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~---~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~d~Vih 121 (357)
T 2x6t_A 46 GRMIIVTGGAGFIGSNIVKALNDKGI-TDILVVDNLKDGTK---FVNLVDLNIADYMDKEDFLIQIMAGEEFGDVEAIFH 121 (357)
T ss_dssp --CEEEETTTSHHHHHHHHHHHHTTC-CCEEEEECCSSGGG---GGGTTTSCCSEEEEHHHHHHHHHTTCCCSSCCEEEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-cEEEEEecCCCcch---hhcccCceEeeecCcHHHHHHHHhhcccCCCCEEEE
Confidence 457888888877654 4455555551 45666654433210 111212224444444445566666 4888877
Q ss_pred cceeEecCC-C-----eecccchHHHHHHHhhCCCcEEEecc
Q 006577 529 GASSVLSNG-T-----VCSRVGTACVAMVAYGFHIPVLVCCE 564 (640)
Q Consensus 529 GADaIlaNG-~-----VvNKiGT~~lAlaAk~~~VPVyV~ae 564 (640)
-|-...... . -+|-.||..+.-+|+..++.|+.++.
T Consensus 122 ~A~~~~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~r~V~~SS 163 (357)
T 2x6t_A 122 EGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREIPFLYASS 163 (357)
T ss_dssp CCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred CCcccCCccCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcc
Confidence 664322110 1 14667899999888888885555543
No 404
>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}
Probab=22.33 E-value=90 Score=29.76 Aligned_cols=96 Identities=14% Similarity=0.115 Sum_probs=58.8
Q ss_pred EEEeecCcHHHHHHH-HHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEE-ec----hHHHHHhhhccEEEEcc
Q 006577 457 VLLTYGSSSAVEMIL-QHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT-HI----NAISYIIHEVTRVFLGA 530 (640)
Q Consensus 457 vILT~g~SstV~~vL-~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI-~D----sAv~~iM~~VdkVlvGA 530 (640)
+||..|-++.+-..| +.+.++ ..+|+++.-++... + ..++ .++ .| ..+..++.++|.||--|
T Consensus 4 ~ilVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~-------~-~~~~--~~~~~Dl~d~~~~~~~~~~~d~vi~~a 71 (267)
T 3ay3_A 4 RLLVTGAAGGVGSAIRPHLGTL--AHEVRLSDIVDLGA-------A-EAHE--EIVACDLADAQAVHDLVKDCDGIIHLG 71 (267)
T ss_dssp EEEEESTTSHHHHHHGGGGGGT--EEEEEECCSSCCCC-------C-CTTE--EECCCCTTCHHHHHHHHTTCSEEEECC
T ss_pred eEEEECCCCHHHHHHHHHHHhC--CCEEEEEeCCCccc-------c-CCCc--cEEEccCCCHHHHHHHHcCCCEEEECC
Confidence 678888887765444 444444 47888887655421 0 1232 222 22 45667778888888766
Q ss_pred eeEecCCCe-----ecccchHHHHHHHhhCCCcEEEeccc
Q 006577 531 SSVLSNGTV-----CSRVGTACVAMVAYGFHIPVLVCCEA 565 (640)
Q Consensus 531 DaIlaNG~V-----vNKiGT~~lAlaAk~~~VPVyV~aet 565 (640)
-.. ..... +|-.|+..+.-+|+..++.-+|...+
T Consensus 72 ~~~-~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS 110 (267)
T 3ay3_A 72 GVS-VERPWNDILQANIIGAYNLYEAARNLGKPRIVFASS 110 (267)
T ss_dssp SCC-SCCCHHHHHHHTHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred cCC-CCCCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 432 12221 57789999998999888866655444
No 405
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=22.17 E-value=4e+02 Score=26.77 Aligned_cols=100 Identities=10% Similarity=0.052 Sum_probs=54.7
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEec---------hHHHHHhh-----
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI---------NAISYIIH----- 521 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D---------sAv~~iM~----- 521 (640)
.+++|.|-+..+..++....+.| -+|++.+ |.+.+... .+...|..+..+.- ..+-..+.
T Consensus 104 ~i~~t~g~~~al~~~~~~l~~~g--d~Vl~~~--p~~~~~~~--~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~ 177 (418)
T 3rq1_A 104 RSIATAGGTGGIHHLIHNYTEPG--DEVLTAD--WYWGAYRV--ICSDTGRTLVTYSLFDEHNNFNHEAFQNRVNELAAK 177 (418)
T ss_dssp EEEEESHHHHHHHHHHHHHSCTT--CEEEEES--SCCTHHHH--HHHHTTCEEEEECSBCTTSSBCHHHHHHHHHHHHHH
T ss_pred cEEECCchHHHHHHHHHHhcCCC--CEEEECC--CCchhHHH--HHHHcCCEEEEEeeeCCCCCcCHHHHHHHHHHhhcc
Confidence 56667666666666665554334 3566554 66655443 34456877777652 12223333
Q ss_pred hccEEEEccee-EecCCCeecccchHHHHHHHh------hCCCcEEE
Q 006577 522 EVTRVFLGASS-VLSNGTVCSRVGTACVAMVAY------GFHIPVLV 561 (640)
Q Consensus 522 ~VdkVlvGADa-IlaNG~VvNKiGT~~lAlaAk------~~~VPVyV 561 (640)
+..++++=..- --..|.++..---..++-+|+ .|++.+++
T Consensus 178 ~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~ 224 (418)
T 3rq1_A 178 QTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGI 224 (418)
T ss_dssp CSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEE
T ss_pred CCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEE
Confidence 23323332222 244577776666666777777 78876665
No 406
>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}
Probab=22.12 E-value=1.1e+02 Score=30.23 Aligned_cols=52 Identities=17% Similarity=0.267 Sum_probs=33.6
Q ss_pred hccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEE
Q 006577 451 KIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTY 510 (640)
Q Consensus 451 ~I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTl 510 (640)
.++.|++||.+|.+..=...+.-|+..|- +||+++ ++.. .+++++ .|.+..+
T Consensus 139 ~~~~g~~VlV~GaG~vG~~a~qlak~~Ga--~Vi~~~-~~~~--~~~~~~---lGa~~v~ 190 (315)
T 3goh_A 139 PLTKQREVLIVGFGAVNNLLTQMLNNAGY--VVDLVS-ASLS--QALAAK---RGVRHLY 190 (315)
T ss_dssp CCCSCCEEEEECCSHHHHHHHHHHHHHTC--EEEEEC-SSCC--HHHHHH---HTEEEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC--EEEEEE-Chhh--HHHHHH---cCCCEEE
Confidence 35789999999995444455566666664 888888 5543 344444 4665444
No 407
>2a8y_A 5'-methylthioadenosine phosphorylase (MTAP); alpha/beta, beta sheet, beta barrel, transferase; HET: MTA; 1.45A {Sulfolobus solfataricus} PDB: 3t94_A* 1v4n_A
Probab=22.09 E-value=2.5e+02 Score=28.06 Aligned_cols=73 Identities=10% Similarity=-0.016 Sum_probs=42.8
Q ss_pred cCcHHHHHHHHHH-HHcCCeeE---EEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEcceeEecCC
Q 006577 462 GSSSAVEMILQHA-HELGKQFR---VVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNG 537 (640)
Q Consensus 462 g~SstV~~vL~~A-~e~Gk~f~---ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGADaIlaNG 537 (640)
.++..+...+.++ .+.|.+++ ||+.-+.|.++-..-.+.|.+ . +|||+|=..
T Consensus 136 ~~d~~L~~~~~~~a~~~g~~~~~~Gv~~~~~Gp~fet~ae~~~~~~------------------~-----~GadaV~Me- 191 (270)
T 2a8y_A 136 PFCNSLRKLAIETAKELNIKTHESGTYICIEGPRFSTRAESRTWRE------------------V-----YKADIIGMT- 191 (270)
T ss_dssp CSCHHHHHHHHHHHHHHTCCEESCCEEEEECCSSCCCHHHHHHHHH------------------T-----TCCCEEESS-
T ss_pred ccCHHHHHHHHHHHHHcCCeEEcceEEEEecCCEecCHHHHHHHHH------------------H-----cCCEEECCc-
Confidence 3455554444443 34455544 666667777764322233321 1 155555443
Q ss_pred CeecccchHHHHHHHhhCCCcEEEeccc
Q 006577 538 TVCSRVGTACVAMVAYGFHIPVLVCCEA 565 (640)
Q Consensus 538 ~VvNKiGT~~lAlaAk~~~VPVyV~aet 565 (640)
|..++.+|+++++||.+++--
T Consensus 192 -------~a~ea~vA~~~gi~~~~i~~V 212 (270)
T 2a8y_A 192 -------LVPEVNLACEAQMCYATIAMV 212 (270)
T ss_dssp -------HHHHHHHHHHTTCEEEEEEEE
T ss_pred -------HHHHHHHHHHCCCCEEEEEEE
Confidence 578999999999999987544
No 408
>2xzm_K RPS14E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_K 3j0o_K 3j0l_K 2zkq_k 3iz6_K 3jyv_K*
Probab=22.05 E-value=1.9e+02 Score=27.25 Aligned_cols=47 Identities=15% Similarity=0.172 Sum_probs=31.9
Q ss_pred HHHHHHHHHcCC-eeEEEEcCC-----CCCchHHHHH-HHHHhCCCceEEEech
Q 006577 468 EMILQHAHELGK-QFRVVIVDS-----RPKHEGKLLL-RRLVRKGLSCTYTHIN 514 (640)
Q Consensus 468 ~~vL~~A~e~Gk-~f~ViV~ES-----RP~~eG~~La-~eL~~~GI~vTlI~Ds 514 (640)
+.+...|.+.|. .++|+|--. .-...|++.+ +.|...|+.+..|.|.
T Consensus 79 ~~~a~~a~e~Gi~~v~V~vkG~gg~~~kgpG~GresairaL~~~GlkI~~I~Dv 132 (151)
T 2xzm_K 79 IDVVNRCKELKINALHIKLRAKGGVETKQPGPGAQSALRALARSGMKIGRIEDV 132 (151)
T ss_dssp HHHHHHHHHHTCCEEEEEEECCCTTSCCSCCSHHHHHHHHHHHTSCEEEEEEEC
T ss_pred HHHHHHHHHcCCeEEEEEEEcCCCCCccCCCccHHHHHHHHHHCCCEEEEEEEe
Confidence 455566666664 466666432 2335677776 8899999999999884
No 409
>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*
Probab=22.04 E-value=2.9e+02 Score=27.96 Aligned_cols=55 Identities=13% Similarity=0.160 Sum_probs=34.4
Q ss_pred hccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEE
Q 006577 451 KIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT 511 (640)
Q Consensus 451 ~I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI 511 (640)
.+..|++||.+|.++.=...+.-|+..|-. +|++++..+.. ..++ .+.|.+..+-
T Consensus 188 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~-~Vi~~~~~~~~--~~~a---~~lGa~~vi~ 242 (373)
T 1p0f_A 188 KVTPGSTCAVFGLGGVGFSAIVGCKAAGAS-RIIGVGTHKDK--FPKA---IELGATECLN 242 (373)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHHTCS-EEEEECSCGGG--HHHH---HHTTCSEEEC
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCC-eEEEECCCHHH--HHHH---HHcCCcEEEe
Confidence 467899999999654434455556655532 68888876543 2333 3568765543
No 410
>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...
Probab=21.87 E-value=3.1e+02 Score=27.83 Aligned_cols=54 Identities=15% Similarity=0.180 Sum_probs=34.0
Q ss_pred hccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEE
Q 006577 451 KIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTY 510 (640)
Q Consensus 451 ~I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTl 510 (640)
.+..|++||.+|.++.=..++..|+..|-. +|++++..+.. .+++ .+.|.+..+
T Consensus 188 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~-~Vi~~~~~~~~--~~~~---~~lGa~~vi 241 (374)
T 2jhf_A 188 KVTQGSTCAVFGLGGVGLSVIMGCKAAGAA-RIIGVDINKDK--FAKA---KEVGATECV 241 (374)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCS-EEEEECSCGGG--HHHH---HHTTCSEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCC-eEEEEcCCHHH--HHHH---HHhCCceEe
Confidence 467899999999654434455666655532 78888876543 2333 356776544
No 411
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=21.86 E-value=1.7e+02 Score=25.12 Aligned_cols=64 Identities=9% Similarity=0.080 Sum_probs=36.5
Q ss_pred HHHHHhCCCceEEEechHH-HHHhhhccEEEEcceeEecCCCeec--ccchHHHHHHHhhCCCcEEEec
Q 006577 498 LRRLVRKGLSCTYTHINAI-SYIIHEVTRVFLGASSVLSNGTVCS--RVGTACVAMVAYGFHIPVLVCC 563 (640)
Q Consensus 498 a~eL~~~GI~vTlI~DsAv-~~iM~~VdkVlvGADaIlaNG~VvN--KiGT~~lAlaAk~~~VPVyV~a 563 (640)
+..|.+.|++|+++..... ..-+.+.|.||+|+-. + +|+..- .+-.+.--+...-.++++.+++
T Consensus 20 a~~l~~~g~~v~~~~~~~~~~~~l~~~d~iiig~pt-y-~~g~~p~~~~~~fl~~l~~~l~~k~~~~f~ 86 (138)
T 5nul_A 20 AKGIIESGKDVNTINVSDVNIDELLNEDILILGCSA-M-TDEVLEESEFEPFIEEISTKISGKKVALFG 86 (138)
T ss_dssp HHHHHHTTCCCEEEEGGGCCHHHHTTCSEEEEEECC-B-TTTBCCTTTHHHHHHHHGGGCTTCEEEEEE
T ss_pred HHHHHHCCCeEEEEEhhhCCHHHHhhCCEEEEEcCc-c-CCCCCChHHHHHHHHHHHhhcCCCEEEEEE
Confidence 3556667888887764432 2345689999999854 3 333332 2333332222224578888765
No 412
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=21.79 E-value=2.6e+02 Score=23.11 Aligned_cols=79 Identities=15% Similarity=0.255 Sum_probs=45.9
Q ss_pred eeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHH-Hhh--hccEEEEcceeEecCCCeecccchHHHHHHHh---
Q 006577 480 QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISY-IIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAY--- 553 (640)
Q Consensus 480 ~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~-iM~--~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk--- 553 (640)
..+|+|+|..+.. ...+...|.+.|+.|....+..-+. .+. ..|.||+..+ +.+ .-|.-.+..+-+
T Consensus 6 ~~~iLivdd~~~~-~~~l~~~l~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~--l~~-----~~g~~~~~~l~~~~~ 77 (140)
T 3grc_A 6 RPRILICEDDPDI-ARLLNLMLEKGGFDSDMVHSAAQALEQVARRPYAAMTVDLN--LPD-----QDGVSLIRALRRDSR 77 (140)
T ss_dssp CSEEEEECSCHHH-HHHHHHHHHHTTCEEEEECSHHHHHHHHHHSCCSEEEECSC--CSS-----SCHHHHHHHHHTSGG
T ss_pred CCCEEEEcCCHHH-HHHHHHHHHHCCCeEEEECCHHHHHHHHHhCCCCEEEEeCC--CCC-----CCHHHHHHHHHhCcc
Confidence 4677888776653 2334466777788876665543322 222 5788888654 222 224444444443
Q ss_pred hCCCcEEEecccc
Q 006577 554 GFHIPVLVCCEAY 566 (640)
Q Consensus 554 ~~~VPVyV~aety 566 (640)
..++|+++++...
T Consensus 78 ~~~~~ii~~s~~~ 90 (140)
T 3grc_A 78 TRDLAIVVVSANA 90 (140)
T ss_dssp GTTCEEEEECTTH
T ss_pred cCCCCEEEEecCC
Confidence 4589999987654
No 413
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=21.76 E-value=2.9e+02 Score=25.29 Aligned_cols=78 Identities=13% Similarity=0.199 Sum_probs=0.0
Q ss_pred CeeEEEEcCCCCCchHHHHHHHHHhCCC-ceEEEechHHHHHhh----------------hccEEEEcceeEecCCCeec
Q 006577 479 KQFRVVIVDSRPKHEGKLLLRRLVRKGL-SCTYTHINAISYIIH----------------EVTRVFLGASSVLSNGTVCS 541 (640)
Q Consensus 479 k~f~ViV~ESRP~~eG~~La~eL~~~GI-~vTlI~DsAv~~iM~----------------~VdkVlvGADaIlaNG~VvN 541 (640)
...+|+|+|..+. .-..|...|...|+ .|....+..-+.-+- ..|.||+ |..+.+.+
T Consensus 60 ~~~~ILiVdDd~~-~~~~l~~~L~~~g~~~v~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlill--D~~lp~~~--- 133 (206)
T 3mm4_A 60 RGKRVLVVDDNFI-SRKVATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFM--DCQMPEMD--- 133 (206)
T ss_dssp TTCEEEEECSCHH-HHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEE--ESCCSSSC---
T ss_pred CCCEEEEEeCCHH-HHHHHHHHHHHcCCCeeeeeCCHHHHHHHHHhhcccccccccccCCCCCEEEE--cCCCCCCC---
Q ss_pred ccchHHHHHHHhh-----CCCcEEEecc
Q 006577 542 RVGTACVAMVAYG-----FHIPVLVCCE 564 (640)
Q Consensus 542 KiGT~~lAlaAk~-----~~VPVyV~ae 564 (640)
|.-.+..+-+. .++||++++.
T Consensus 134 --G~el~~~lr~~~~~~~~~~piI~ls~ 159 (206)
T 3mm4_A 134 --GYEATREIRKVEKSYGVRTPIIAVSG 159 (206)
T ss_dssp --HHHHHHHHHHHHHTTTCCCCEEEEES
T ss_pred --HHHHHHHHHhhhhhcCCCCcEEEEEC
No 414
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=21.75 E-value=2.5e+02 Score=27.65 Aligned_cols=76 Identities=12% Similarity=0.124 Sum_probs=42.2
Q ss_pred HHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEE---EechHHHHHhhhccEEEEcceeEecCCCeecccchHH
Q 006577 471 LQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTY---THINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTAC 547 (640)
Q Consensus 471 L~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTl---I~DsAv~~iM~~VdkVlvGADaIlaNG~VvNKiGT~~ 547 (640)
+..+.++..++++++... +..+-....+++....=+|++ +...-+..+|..+|.+++.. | +.
T Consensus 229 ~~~l~~~~~~~~l~i~~g-~~~~~~~~l~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~v~~S------g-------~~- 293 (384)
T 1vgv_A 229 LADIATTHQDIQIVYPVH-LNPNVREPVNRILGHVKNVILIDPQEYLPFVWLMNHAWLILTDS------G-------GI- 293 (384)
T ss_dssp HHHHHHHCTTEEEEEECC-BCHHHHHHHHHHHTTCTTEEEECCCCHHHHHHHHHHCSEEEESS------S-------TG-
T ss_pred HHHHHhhCCCeEEEEEcC-CCHHHHHHHHHHhhcCCCEEEeCCCCHHHHHHHHHhCcEEEECC------c-------ch-
Confidence 333334445677776422 111122333444322125666 34456888899999987764 3 22
Q ss_pred HHHHHhhCCCcEEEe
Q 006577 548 VAMVAYGFHIPVLVC 562 (640)
Q Consensus 548 lAlaAk~~~VPVyV~ 562 (640)
.+=|-.+|+||++.
T Consensus 294 -~lEA~a~G~PvI~~ 307 (384)
T 1vgv_A 294 -QEEAPSLGKPVLVM 307 (384)
T ss_dssp -GGTGGGGTCCEEEE
T ss_pred -HHHHHHcCCCEEEc
Confidence 24466789999985
No 415
>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii}
Probab=21.72 E-value=1e+02 Score=29.05 Aligned_cols=97 Identities=10% Similarity=0.030 Sum_probs=54.7
Q ss_pred EEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhh--ccEEEEcceeEe
Q 006577 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHE--VTRVFLGASSVL 534 (640)
Q Consensus 457 vILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~--VdkVlvGADaIl 534 (640)
+||..|-++.+-..|.....+| .+|+++.-++..+ .|+.+-+.....+..++.. +|.||--|-...
T Consensus 2 ~ilVtGatG~iG~~l~~~L~~g--~~V~~~~r~~~~~----------~~~~~Dl~~~~~~~~~~~~~~~d~vi~~a~~~~ 69 (273)
T 2ggs_A 2 RTLITGASGQLGIELSRLLSER--HEVIKVYNSSEIQ----------GGYKLDLTDFPRLEDFIIKKRPDVIINAAAMTD 69 (273)
T ss_dssp CEEEETTTSHHHHHHHHHHTTT--SCEEEEESSSCCT----------TCEECCTTSHHHHHHHHHHHCCSEEEECCCCCC
T ss_pred EEEEECCCChhHHHHHHHHhcC--CeEEEecCCCcCC----------CCceeccCCHHHHHHHHHhcCCCEEEECCcccC
Confidence 4777787776655444433344 6777776554321 1222222222355566665 787776553221
Q ss_pred cCC--------CeecccchHHHHHHHhhCCCcEEEeccc
Q 006577 535 SNG--------TVCSRVGTACVAMVAYGFHIPVLVCCEA 565 (640)
Q Consensus 535 aNG--------~VvNKiGT~~lAlaAk~~~VPVyV~aet 565 (640)
.+. --+|-.|+..+.-+|+..++.|+.++..
T Consensus 70 ~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~iv~~SS~ 108 (273)
T 2ggs_A 70 VDKCEIEKEKAYKINAEAVRHIVRAGKVIDSYIVHISTD 108 (273)
T ss_dssp HHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEG
T ss_pred hhhhhhCHHHHHHHhHHHHHHHHHHHHHhCCeEEEEecc
Confidence 100 0135678999998998888876665544
No 416
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1
Probab=21.67 E-value=3.9e+02 Score=26.64 Aligned_cols=101 Identities=14% Similarity=0.150 Sum_probs=51.9
Q ss_pred CCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEech-------HHHHHhh----h
Q 006577 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN-------AISYIIH----E 522 (640)
Q Consensus 454 dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds-------Av~~iM~----~ 522 (640)
...+++|.|.+..+..++..+.+.| -+|++.+ |.+.|.. ..+...|+.+..+... -+..+-+ +
T Consensus 101 ~~~v~~~~g~t~al~~~~~~l~~~g--d~Vl~~~--~~~~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~ 174 (389)
T 1o4s_A 101 PDQVVVTNGAKQALFNAFMALLDPG--DEVIVFS--PVWVSYI--PQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVGK 174 (389)
T ss_dssp GGGEEEESHHHHHHHHHHHHHCCTT--CEEEEEE--SCCTTHH--HHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCCTT
T ss_pred HHHEEEecCHHHHHHHHHHHhCCCC--CEEEEcC--CCchhHH--HHHHHcCCEEEEEecCCccCCCCCHHHHHHhcccC
Confidence 3467777666666666666554333 3455553 4444433 2334568877776522 1222222 3
Q ss_pred ccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 523 VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 523 VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
+..|++ ..---..|.++..-=-..++-+|+.|++.+++
T Consensus 175 ~~~v~~-~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 212 (389)
T 1o4s_A 175 TKAVLI-NSPNNPTGVVYRREFLEGLVRLAKKRNFYIIS 212 (389)
T ss_dssp EEEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred ceEEEE-cCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 333443 22111234444332234566688899998776
No 417
>3u7q_B Nitrogenase molybdenum-iron protein beta chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1fp4_B* 1g21_B* 1g20_B* 1m1n_B* 1l5h_B* 1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B* 2afk_B* 2min_B* 3k1a_B* 3min_B*
Probab=21.66 E-value=8.2e+02 Score=26.77 Aligned_cols=97 Identities=14% Similarity=0.148 Sum_probs=54.1
Q ss_pred CCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHh--CCCceEEEechH---HHHHhh--hccEE
Q 006577 454 DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVR--KGLSCTYTHINA---ISYIIH--EVTRV 526 (640)
Q Consensus 454 dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~--~GI~vTlI~DsA---v~~iM~--~VdkV 526 (640)
.|..|+.++-...+..+.+-+.+.|-....+++.+.....-.++...|.+ .|+.+.++.+.- +-..++ ++|++
T Consensus 363 ~GKrvaI~gd~~~~~~la~fL~elGm~vv~v~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~D~~~l~~~i~~~~pDLl 442 (523)
T 3u7q_B 363 HGKRFALWGDPDFVMGLVKFLLELGCEPVHILCHNGNKRWKKAVDAILAASPYGKNATVYIGKDLWHLRSLVFTDKPDFM 442 (523)
T ss_dssp TTCEEEEECSHHHHHHHHHHHHHTTCEEEEEEETTCCHHHHHHHHHHHHTSGGGTTCEEEESCCHHHHHHHHHHTCCSEE
T ss_pred CCCEEEEECCchHHHHHHHHHHHcCCEEEEEEeCCCCHHHHHHHHHHHhhccCCCCcEEEECCCHHHHHHHHHhcCCCEE
Confidence 47888889888777666666667776655555554332222333344443 355566554432 223333 46766
Q ss_pred EEcceeEecCCCeecccchHHHHH----HHhhCCCcEEEec
Q 006577 527 FLGASSVLSNGTVCSRVGTACVAM----VAYGFHIPVLVCC 563 (640)
Q Consensus 527 lvGADaIlaNG~VvNKiGT~~lAl----aAk~~~VPVyV~a 563 (640)
|-|. -|-+ +|. .||+++||++.++
T Consensus 443 ig~s------------~~k~-~a~~~~~~~~~~giP~irig 470 (523)
T 3u7q_B 443 IGNS------------YGKF-IQRDTLHKGKEFEVPLIRIG 470 (523)
T ss_dssp EECT------------THHH-HHHHHHHHCGGGCCCEEECS
T ss_pred EECc------------cHHH-HHHHhhcccccCCCceEEec
Confidence 5442 2223 332 4788899999763
No 418
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=21.55 E-value=2.3e+02 Score=30.90 Aligned_cols=70 Identities=19% Similarity=0.144 Sum_probs=44.0
Q ss_pred CCCEEEeecCcHHHHHHHHH-HHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEcc
Q 006577 454 DGDVLLTYGSSSAVEMILQH-AHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA 530 (640)
Q Consensus 454 dgdvILT~g~SstV~~vL~~-A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGA 530 (640)
.+..|..+|-.++-...|.. ++++| ++|.+.|.++... +...|.+.||++.+-.+.. .+...+|.||++.
T Consensus 18 ~~~~i~~iGiGg~Gms~lA~~l~~~G--~~V~~sD~~~~~~---~~~~L~~~gi~~~~G~~~~--~~~~~~d~vV~Sp 88 (524)
T 3hn7_A 18 QGMHIHILGICGTFMGSLALLARALG--HTVTGSDANIYPP---MSTQLEQAGVTIEEGYLIA--HLQPAPDLVVVGN 88 (524)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESCCCTT---HHHHHHHTTCEEEESCCGG--GGCSCCSEEEECT
T ss_pred cCCEEEEEEecHhhHHHHHHHHHhCC--CEEEEECCCCCcH---HHHHHHHCCCEEECCCCHH--HcCCCCCEEEECC
Confidence 34667777766554443322 34444 7899999887643 4578889999887644432 2334688887764
No 419
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=21.45 E-value=1.2e+02 Score=29.71 Aligned_cols=30 Identities=30% Similarity=0.438 Sum_probs=13.2
Q ss_pred EEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCC
Q 006577 457 VLLTYGSSSAVEMILQHAHELGKQFRVVIVDSR 489 (640)
Q Consensus 457 vILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESR 489 (640)
+|+..+.. ....+++.+.+.| ++|++++..
T Consensus 4 ~Ililg~g-~~~~l~~a~~~~G--~~v~~~~~~ 33 (334)
T 2r85_A 4 RIATYASH-SALQILKGAKDEG--FETIAFGSS 33 (334)
T ss_dssp EEEEESST-THHHHHHHHHHTT--CCEEEESCG
T ss_pred EEEEECCh-hHHHHHHHHHhCC--CEEEEEECC
Confidence 34444443 3334445454433 344544443
No 420
>3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans}
Probab=21.45 E-value=2.6e+02 Score=23.92 Aligned_cols=56 Identities=11% Similarity=0.010 Sum_probs=33.3
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCc-eE--EEechHHHHHhhhccEEEEccee
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLS-CT--YTHINAISYIIHEVTRVFLGASS 532 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~-vT--lI~DsAv~~iM~~VdkVlvGADa 532 (640)
..||+.|.++.--..+... +|-+.+.+.||+ +. .+..+.+...+.++|.||++.+-
T Consensus 19 ~kIlvvC~sG~gTS~m~~~---------------------kl~~~~~~~gi~~~~i~~~~~~~~~~~~~~~DlIi~t~~l 77 (110)
T 3czc_A 19 VKVLTACGNGMGSSMVIKM---------------------KVENALRQLGVSDIESASCSVGEAKGLASNYDIVVASNHL 77 (110)
T ss_dssp EEEEEECCCCHHHHHHHHH---------------------HHHHHHHHTTCCCEEEEEECHHHHHHHGGGCSEEEEETTT
T ss_pred cEEEEECCCcHHHHHHHHH---------------------HHHHHHHHcCCCeEEEEEeeHHHHhhccCCCcEEEECCch
Confidence 3578888776544333322 133456677877 44 33444454456789999988753
No 421
>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2
Probab=21.36 E-value=90 Score=30.59 Aligned_cols=109 Identities=15% Similarity=0.106 Sum_probs=58.1
Q ss_pred CCCEEEeecCcHHHHH-HHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEE-ec----hHHHHHhhh--ccE
Q 006577 454 DGDVLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT-HI----NAISYIIHE--VTR 525 (640)
Q Consensus 454 dgdvILT~g~SstV~~-vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI-~D----sAv~~iM~~--Vdk 525 (640)
.+.+||..|-++.+-. +++.+.++| .+|+++.-++..........|. .+-.++++ .| ..+..++.. +|.
T Consensus 13 ~~~~vlVTGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 89 (335)
T 1rpn_A 13 MTRSALVTGITGQDGAYLAKLLLEKG--YRVHGLVARRSSDTRWRLRELG-IEGDIQYEDGDMADACSVQRAVIKAQPQE 89 (335)
T ss_dssp --CEEEEETTTSHHHHHHHHHHHHTT--CEEEEEECCCSSCCCHHHHHTT-CGGGEEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred cCCeEEEECCCChHHHHHHHHHHHCC--CeEEEEeCCCccccccchhhcc-ccCceEEEECCCCCHHHHHHHHHHcCCCE
Confidence 3578898898877654 445555656 5777765444321111112221 11123332 22 345566665 588
Q ss_pred EEEcceeEecC---CC-----eecccchHHHHHHHhhCCC-cEEEeccc
Q 006577 526 VFLGASSVLSN---GT-----VCSRVGTACVAMVAYGFHI-PVLVCCEA 565 (640)
Q Consensus 526 VlvGADaIlaN---G~-----VvNKiGT~~lAlaAk~~~V-PVyV~aet 565 (640)
||--|-....+ .+ -+|-.||..+.-+|+.+++ .-+|.+.+
T Consensus 90 Vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS 138 (335)
T 1rpn_A 90 VYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQAST 138 (335)
T ss_dssp EEECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEE
T ss_pred EEECccccchhhhhhChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 87665322110 01 2466799999988988886 55554443
No 422
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=21.31 E-value=3e+02 Score=24.33 Aligned_cols=97 Identities=16% Similarity=0.210 Sum_probs=53.2
Q ss_pred CCCEEEeecCcH---HHHHHHHHHHHcCCeeEEEEcCCCCCch-HHHHHHHHHhCCC--ceEE---EechHHHHHhhhcc
Q 006577 454 DGDVLLTYGSSS---AVEMILQHAHELGKQFRVVIVDSRPKHE-GKLLLRRLVRKGL--SCTY---THINAISYIIHEVT 524 (640)
Q Consensus 454 dgdvILT~g~Ss---tV~~vL~~A~e~Gk~f~ViV~ESRP~~e-G~~La~eL~~~GI--~vTl---I~DsAv~~iM~~Vd 524 (640)
+..+|+..|+-. -+..+|..+.+- .+++++++-..+..+ =.+++..+ +.|+ .+++ +.+..+..+|..+|
T Consensus 22 ~~~~i~~~G~~~~~Kg~~~li~a~~~l-~~~~l~i~G~~~~~~~l~~~~~~~-~~~l~~~v~~~g~~~~~e~~~~~~~ad 99 (177)
T 2f9f_A 22 YGDFWLSVNRIYPEKRIELQLEVFKKL-QDEKLYIVGWFSKGDHAERYARKI-MKIAPDNVKFLGSVSEEELIDLYSRCK 99 (177)
T ss_dssp CCSCEEEECCSSGGGTHHHHHHHHHHC-TTSCEEEEBCCCTTSTHHHHHHHH-HHHSCTTEEEEESCCHHHHHHHHHHCS
T ss_pred CCCEEEEEeccccccCHHHHHHHHHhC-CCcEEEEEecCccHHHHHHHHHhh-hcccCCcEEEeCCCCHHHHHHHHHhCC
Confidence 345677777643 244444443332 456766665555432 22223311 2233 3443 44566889999999
Q ss_pred EEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEe
Q 006577 525 RVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (640)
Q Consensus 525 kVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~ 562 (640)
.+|+... ..| .|. ..+=|-.+|+||++.
T Consensus 100 i~v~ps~---~e~-----~~~--~~~Eama~G~PvI~~ 127 (177)
T 2f9f_A 100 GLLCTAK---DED-----FGL--TPIEAMASGKPVIAV 127 (177)
T ss_dssp EEEECCS---SCC-----SCH--HHHHHHHTTCCEEEE
T ss_pred EEEeCCC---cCC-----CCh--HHHHHHHcCCcEEEe
Confidence 9987543 122 132 235566789999984
No 423
>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}
Probab=21.24 E-value=5.5e+02 Score=26.01 Aligned_cols=106 Identities=9% Similarity=0.080 Sum_probs=50.5
Q ss_pred ccCCCEEEeecCcHHH-HHHHHHHHHc----CC-------eeEEEEcCCCCCchHHHHHHHHHhCCCceEEEec------
Q 006577 452 IRDGDVLLTYGSSSAV-EMILQHAHEL----GK-------QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI------ 513 (640)
Q Consensus 452 I~dgdvILT~g~SstV-~~vL~~A~e~----Gk-------~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D------ 513 (640)
+....+++|.|.+..+ ..++..+... |+ .-+|++. .|.+.+...+ +...|+.+..+..
T Consensus 91 ~~~~~i~~t~G~~~al~l~~~~~~l~~~~~~g~~~~~~~d~~~Vl~~--~p~y~~~~~~--~~~~g~~~~~v~~~~~g~d 166 (422)
T 3d6k_A 91 LPADLVVAQDGSSLNIMFDLISWSYTWGNNDSSRPWSAEEKVKWLCP--VPGYDRHFTI--TEHFGFEMINVPMTDEGPD 166 (422)
T ss_dssp CCGGGEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEE--ESCCHHHHHH--HHHHTCEEEEEEEETTEEC
T ss_pred CChhHEEEecchHHHHHHHHHHHHhcCcccccccccccCCCCEEEEe--CCccHHHHHH--HHHcCCEEEecCCCCCCCC
Confidence 3445678888877665 2444444332 21 2245554 4666665443 3335777666542
Q ss_pred -hHHHHHhh--hccEEEEcceeEecCCCeecccchHHHHHHHh-hCCCcEEE
Q 006577 514 -NAISYIIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAY-GFHIPVLV 561 (640)
Q Consensus 514 -sAv~~iM~--~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk-~~~VPVyV 561 (640)
..+-..+. ++..|++=+.-=-..|.++..-=--.++-+|+ +|++.|++
T Consensus 167 ~~~l~~~l~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~ 218 (422)
T 3d6k_A 167 MGVVRELVKDPQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVW 218 (422)
T ss_dssp HHHHHHHHTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEE
T ss_pred HHHHHHHHhcCCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEE
Confidence 22333333 23333311111111243333222235666777 88987665
No 424
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=21.20 E-value=2.4e+02 Score=25.35 Aligned_cols=62 Identities=11% Similarity=0.201 Sum_probs=39.5
Q ss_pred HHHHHHhCCCceEEEechHHHHH----hhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEeccc
Q 006577 497 LLRRLVRKGLSCTYTHINAISYI----IHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEA 565 (640)
Q Consensus 497 La~eL~~~GI~vTlI~DsAv~~i----M~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~aet 565 (640)
+...|...|++|.++.|...... +.+=|.||+ |...| +..-+..++-.||..|+++++++..
T Consensus 67 ~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~vI~----iS~sG---~t~~~~~~~~~ak~~g~~vi~IT~~ 132 (183)
T 2xhz_A 67 MAATFASTGTPSFFVHPGEAAHGDLGMVTPQDVVIA----ISNSG---ESSEITALIPVLKRLHVPLICITGR 132 (183)
T ss_dssp HHHHHHTTTCCEEECCTTHHHHHTSTTCCTTCEEEE----ECSSS---CCHHHHHHHHHHHTTTCCEEEEESC
T ss_pred HHHHHHhcCceEEEeCchHHhhhhhccCCCCCEEEE----EeCCC---CCHHHHHHHHHHHHCCCCEEEEECC
Confidence 45566677888877776544321 234465553 22345 2344677778899999999988664
No 425
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*
Probab=21.16 E-value=3.1e+02 Score=28.70 Aligned_cols=90 Identities=10% Similarity=0.022 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHcCCeeEEEEcCCCCCchHHH-HH-------HHHHhCCCceEEEec--------hHHHHHhh-hccEEE
Q 006577 465 SAVEMILQHAHELGKQFRVVIVDSRPKHEGKL-LL-------RRLVRKGLSCTYTHI--------NAISYIIH-EVTRVF 527 (640)
Q Consensus 465 stV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~-La-------~eL~~~GI~vTlI~D--------sAv~~iM~-~VdkVl 527 (640)
..+..+|....+.| -+|++.+ .|.+.+.. +. ..|...|+.+..+.. ..+-..+. +..+|+
T Consensus 88 ~Ai~~al~all~~G--D~Vl~~~-~~~y~~~~~~~~~~g~~~~~l~~~G~~~~~v~~~~~g~~d~e~l~~ai~~~tklV~ 164 (409)
T 3jzl_A 88 HAISTVLFGILRPD--DELLYIT-GQPYDTLEEIVGIRKQGQGSLKDFHIGYSSVPLLENGDVDFPRIAKKMTPKTKMIG 164 (409)
T ss_dssp HHHHHHHHHHCCTT--CEEEECS-SSCCTTHHHHHTSSSSSSSCTGGGTCEEEECCCCTTSCCCHHHHHHHCCTTEEEEE
T ss_pred HHHHHHHHHhcCCC--CEEEEeC-CCCcHhHHHHHhcccchhhHHHHcCCEEEEeCCCCCCCcCHHHHHHhccCCCeEEE
Confidence 33444444443333 3566655 34444433 33 356677998887753 23333333 333333
Q ss_pred EcceeEecCCCeecccchH----HHHHHHhh--CCCcEEE
Q 006577 528 LGASSVLSNGTVCSRVGTA----CVAMVAYG--FHIPVLV 561 (640)
Q Consensus 528 vGADaIlaNG~VvNKiGT~----~lAlaAk~--~~VPVyV 561 (640)
+.. +-|...|..|+. .|+-+|+. |+++|+|
T Consensus 165 i~~----s~g~p~nptg~v~~l~~I~~la~~~~~~~~liv 200 (409)
T 3jzl_A 165 IQR----SRGYADRPSFTIEKIKEMIVFVKNINPEVIVFV 200 (409)
T ss_dssp EEC----SCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEE
T ss_pred EEC----CCCCCCCCcCccccHHHHHHHHHhhCCCCEEEE
Confidence 321 234466777764 46667888 9998887
No 426
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=21.05 E-value=2.9e+02 Score=24.73 Aligned_cols=79 Identities=13% Similarity=0.035 Sum_probs=43.6
Q ss_pred eeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHH-hh--hccEEEEcceeEecCCCeecccchHHHHHHHh-hC
Q 006577 480 QFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYI-IH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAY-GF 555 (640)
Q Consensus 480 ~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~i-M~--~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk-~~ 555 (640)
..+|+++|..|.. ...+...|...|+.|....+..-+.- +. ..|.||+.. -+.++ -|--.+..+-+ ..
T Consensus 4 ~~~ilivdd~~~~-~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~--~lp~~-----~g~~~~~~l~~~~~ 75 (208)
T 1yio_A 4 KPTVFVVDDDMSV-REGLRNLLRSAGFEVETFDCASTFLEHRRPEQHGCLVLDM--RMPGM-----SGIELQEQLTAISD 75 (208)
T ss_dssp CCEEEEECSCHHH-HHHHHHHHHTTTCEEEEESSHHHHHHHCCTTSCEEEEEES--CCSSS-----CHHHHHHHHHHTTC
T ss_pred CCEEEEEcCCHHH-HHHHHHHHHhCCceEEEcCCHHHHHHhhhccCCCEEEEeC--CCCCC-----CHHHHHHHHHhcCC
Confidence 3467777777653 22344666677887775544332221 22 478887753 33332 24333333333 35
Q ss_pred CCcEEEecccc
Q 006577 556 HIPVLVCCEAY 566 (640)
Q Consensus 556 ~VPVyV~aety 566 (640)
++||++++...
T Consensus 76 ~~~ii~ls~~~ 86 (208)
T 1yio_A 76 GIPIVFITAHG 86 (208)
T ss_dssp CCCEEEEESCT
T ss_pred CCCEEEEeCCC
Confidence 89999987654
No 427
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*
Probab=21.03 E-value=1.8e+02 Score=32.38 Aligned_cols=66 Identities=27% Similarity=0.261 Sum_probs=45.9
Q ss_pred HHHHHhccCCCEEEeecCcHHHHHHHHHHHH---c----C-C---------------------------eeEEEEcCCCC
Q 006577 446 KHAVTKIRDGDVLLTYGSSSAVEMILQHAHE---L----G-K---------------------------QFRVVIVDSRP 490 (640)
Q Consensus 446 ~~a~~~I~dgdvILT~g~SstV~~vL~~A~e---~----G-k---------------------------~f~ViV~ESRP 490 (640)
.....+..+|-++.||+..+.|...|..+-= . | + .+.|+|+-+-
T Consensus 203 ~~l~~~~~~g~~~~t~~~~~~vr~~L~~aGf~v~~~~~~g~krem~~~~~~~~~~~~~~~~~~~~~~~~~~DVvIIGgG- 281 (676)
T 3ps9_A 203 NAMARLARPGGTLATFTSAGFVRRGLQDAGFTMQKRKGFGRKREMLCGVMEQTLPLPCSAPWFNRTGSSKREAAIIGGG- 281 (676)
T ss_dssp HHHHHHEEEEEEEEESCCCHHHHHHHHHHTCEEEEEECSTTCCEEEEEECCSCCCCCCSCGGGCCCCCSCCEEEEECCS-
T ss_pred HHHHHHhCCCCEEEeccCcHHHHHHHHhCCeEEEeccccccchhhhheeccccccccccCCcccCccCCCCCEEEECCC-
Confidence 3345577889999999999999988887630 0 0 1 0234444332
Q ss_pred CchHHHHHHHHHhCCCceEEEec
Q 006577 491 KHEGKLLLRRLVRKGLSCTYTHI 513 (640)
Q Consensus 491 ~~eG~~La~eL~~~GI~vTlI~D 513 (640)
.-|...|..|.+.|++|+++--
T Consensus 282 -iaGlsaA~~La~~G~~V~vlEk 303 (676)
T 3ps9_A 282 -IASALLSLALLRRGWQVTLYCA 303 (676)
T ss_dssp -HHHHHHHHHHHTTTCEEEEEES
T ss_pred -HHHHHHHHHHHHCCCeEEEEeC
Confidence 2477788999999999999863
No 428
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A
Probab=21.02 E-value=2.4e+02 Score=28.45 Aligned_cols=55 Identities=18% Similarity=0.198 Sum_probs=34.1
Q ss_pred hccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEE
Q 006577 451 KIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT 511 (640)
Q Consensus 451 ~I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI 511 (640)
.+..|++||.+|.++.=...+.-|+..|-. +|++++..+.. .+++ .+.|.+.++-
T Consensus 168 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~-~Vi~~~~~~~~--~~~a---~~lGa~~vi~ 222 (356)
T 1pl8_A 168 GVTLGHKVLVCGAGPIGMVTLLVAKAMGAA-QVVVTDLSATR--LSKA---KEIGADLVLQ 222 (356)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTCS-EEEEEESCHHH--HHHH---HHTTCSEEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCC-EEEEECCCHHH--HHHH---HHhCCCEEEc
Confidence 467899999999654434455556655531 78888765432 2333 4568775544
No 429
>4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens}
Probab=21.01 E-value=80 Score=30.18 Aligned_cols=52 Identities=15% Similarity=-0.029 Sum_probs=32.6
Q ss_pred HHHHHhhh--ccEEEEcceeEec------C---CCeecccchHHHHHHHhhCCCcEEEecccc
Q 006577 515 AISYIIHE--VTRVFLGASSVLS------N---GTVCSRVGTACVAMVAYGFHIPVLVCCEAY 566 (640)
Q Consensus 515 Av~~iM~~--VdkVlvGADaIla------N---G~VvNKiGT~~lAlaAk~~~VPVyV~aety 566 (640)
.+..++.. +|.||--|-.+-. + ---.|-.||..+.-+|+.++++-+|.+.+.
T Consensus 52 ~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~v~~SS~ 114 (319)
T 4b8w_A 52 QTRALFEKVQPTHVIHLAAMVGGLFRNIKYNLDFWRKNVHMNDNVLHSAFEVGARKVVSCLST 114 (319)
T ss_dssp HHHHHHHHSCCSEEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCG
T ss_pred HHHHHHhhcCCCEEEECceecccccccccCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEcch
Confidence 44555555 7777765543210 0 013467899999999999999866654443
No 430
>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*
Probab=20.88 E-value=3.2e+02 Score=27.74 Aligned_cols=54 Identities=13% Similarity=0.134 Sum_probs=34.0
Q ss_pred hccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEE
Q 006577 451 KIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTY 510 (640)
Q Consensus 451 ~I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTl 510 (640)
.+..|++||.+|.+..=..++.-|+..|-. +|++++..+.. ..++ .+.|.+.++
T Consensus 192 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~-~Vi~~~~~~~~--~~~a---~~lGa~~vi 245 (376)
T 1e3i_A 192 KVTPGSTCAVFGLGCVGLSAIIGCKIAGAS-RIIAIDINGEK--FPKA---KALGATDCL 245 (376)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCS-EEEEECSCGGG--HHHH---HHTTCSEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCC-eEEEEcCCHHH--HHHH---HHhCCcEEE
Confidence 467899999999654434455666655521 68888876643 2333 356776554
No 431
>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}
Probab=20.84 E-value=2.8e+02 Score=28.63 Aligned_cols=54 Identities=19% Similarity=0.273 Sum_probs=33.8
Q ss_pred hccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEE
Q 006577 451 KIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTY 510 (640)
Q Consensus 451 ~I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTl 510 (640)
.+..|++||.+|.+..=..++.-|+..|- -+|++++..+. -..++++| |.+.++
T Consensus 210 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~~Vi~~~~~~~--~~~~~~~l---Ga~~vi 263 (404)
T 3ip1_A 210 GIRPGDNVVILGGGPIGLAAVAILKHAGA-SKVILSEPSEV--RRNLAKEL---GADHVI 263 (404)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEECSCHH--HHHHHHHH---TCSEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHH--HHHHHHHc---CCCEEE
Confidence 36789999999985443445555655552 17888887653 23444544 766544
No 432
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=20.82 E-value=1.2e+02 Score=27.95 Aligned_cols=89 Identities=11% Similarity=0.077 Sum_probs=54.9
Q ss_pred HHHHHhccCC-CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHH----Hh
Q 006577 446 KHAVTKIRDG-DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISY----II 520 (640)
Q Consensus 446 ~~a~~~I~dg-dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~----iM 520 (640)
+.++++|.+- +.|..+|...+-.. | ..+...|...|++|.++.|....+ .+
T Consensus 35 ~~~~~~i~~a~~~I~i~G~G~S~~~----A--------------------~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 90 (201)
T 3fxa_A 35 VKTVEKIAECTGKIVVAGCGTSGVA----A--------------------KKLVHSFNCIERPAVFLTPSDAVHGTLGVL 90 (201)
T ss_dssp HHHHHHHHHCSSCEEEECCTHHHHH----H--------------------HHHHHHHHHTTCCEEECCHHHHTTTGGGGC
T ss_pred HHHHHHHHhcCCcEEEEEecHHHHH----H--------------------HHHHHHHHhcCCcEEEeCchHHHhhhhhcC
Confidence 3344555555 47888887655211 1 124456777899999888764322 13
Q ss_pred hhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEeccc
Q 006577 521 HEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEA 565 (640)
Q Consensus 521 ~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~aet 565 (640)
.+=|.||+ |...|.. .-+..++-.||..|+++++++..
T Consensus 91 ~~~dvvI~----iS~sG~t---~~~~~~~~~ak~~g~~vi~IT~~ 128 (201)
T 3fxa_A 91 QKEDILIL----ISKGGNT---GELLNLIPACKTKGSTLIGVTEN 128 (201)
T ss_dssp CTTCEEEE----ECSSSCC---HHHHTTHHHHHHHTCEEEEEESC
T ss_pred CCCCEEEE----EeCCCCC---HHHHHHHHHHHHcCCeEEEEECC
Confidence 34566654 3345533 34566777899999999998654
No 433
>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*
Probab=20.81 E-value=4.1e+02 Score=26.67 Aligned_cols=104 Identities=11% Similarity=-0.008 Sum_probs=60.1
Q ss_pred CCEEEeecCcHHHHH-HHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEE--ec-hHHHHHhhhccEEEEcc
Q 006577 455 GDVLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYT--HI-NAISYIIHEVTRVFLGA 530 (640)
Q Consensus 455 gdvILT~g~SstV~~-vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI--~D-sAv~~iM~~VdkVlvGA 530 (640)
+.+||..|-++.+-. +++.+.++| .+|+++.-++... ..+...++.+... .| ..+..++.++|.||--|
T Consensus 29 ~~~vlVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~-----~~~~~~~v~~~~~Dl~d~~~~~~~~~~~d~Vih~A 101 (379)
T 2c5a_A 29 NLKISITGAGGFIASHIARRLKHEG--HYVIASDWKKNEH-----MTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLA 101 (379)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEESSCCSS-----SCGGGTCSEEEECCTTSHHHHHHHHTTCSEEEECC
T ss_pred CCeEEEECCccHHHHHHHHHHHHCC--CeEEEEECCCccc-----hhhccCCceEEECCCCCHHHHHHHhCCCCEEEECc
Confidence 457999898877654 445555666 5677665433211 0111234433221 12 34566777889888766
Q ss_pred eeEec----CCC-----eecccchHHHHHHHhhCCCcEEEeccc
Q 006577 531 SSVLS----NGT-----VCSRVGTACVAMVAYGFHIPVLVCCEA 565 (640)
Q Consensus 531 DaIla----NG~-----VvNKiGT~~lAlaAk~~~VPVyV~aet 565 (640)
-.... ... -+|-.||..+.-+|+.+++.-+|.+.+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~~V~~SS 145 (379)
T 2c5a_A 102 ADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASS 145 (379)
T ss_dssp CCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred eecCcccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEee
Confidence 43211 000 146779999999999999865555444
No 434
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center for structural genomics, P 5'-phosphate binding; HET: PLP; 2.86A {Anaerococcus prevotii} PDB: 4emy_A*
Probab=20.77 E-value=4.1e+02 Score=26.62 Aligned_cols=100 Identities=14% Similarity=0.010 Sum_probs=53.6
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEec---------hHHHHHhh-----
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI---------NAISYIIH----- 521 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D---------sAv~~iM~----- 521 (640)
.+++|-|-+..+..++....+.|. +|++.+ |.+.+...+ +...|..+..+.. ..+-..+.
T Consensus 103 ~i~~t~g~~~al~~~~~~~~~~gd--~Vl~~~--p~~~~~~~~--~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~ 176 (413)
T 3t18_A 103 SAIATPGGTGAIRSAIFSYLDEGD--PLICHD--YYWAPYRKI--CEEFGRNFKTFEFFTDDFAFNIDVYKEAIDEGIRD 176 (413)
T ss_dssp EEEEESHHHHHHHHHHHHHCCSSC--EEEEES--SCCTHHHHH--HHHHTCEEEEECCBCTTSSBCHHHHHHHHHHHHHH
T ss_pred cEEEcCccHHHHHHHHHHhcCCCC--EEEECC--CCcccHHHH--HHHhCCeEEEeeccCCCCCcCHHHHHHHHHHHhhc
Confidence 567776666666666665544443 455543 566554433 3345777666652 12223333
Q ss_pred hccEEEEccee-EecCCCeecccchHHHHHHHh------hCCCcEEE
Q 006577 522 EVTRVFLGASS-VLSNGTVCSRVGTACVAMVAY------GFHIPVLV 561 (640)
Q Consensus 522 ~VdkVlvGADa-IlaNG~VvNKiGT~~lAlaAk------~~~VPVyV 561 (640)
+..++++=..- --..|.++..---..++-+|+ .|++.+++
T Consensus 177 ~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~ 223 (413)
T 3t18_A 177 SDRIASLINSPGNNPTGYSLSDEEWDEVITFLKEKAEDKDKKITLIV 223 (413)
T ss_dssp CSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTTSTTCEEEEEE
T ss_pred CCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Confidence 23323332222 234576666655566666777 78877665
No 435
>3nzo_A UDP-N-acetylglucosamine 4,6-dehydratase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, NAD; HET: MSE NAD; 2.10A {Vibrio fischeri} PDB: 3pvz_A*
Probab=20.77 E-value=6.3e+02 Score=25.89 Aligned_cols=109 Identities=9% Similarity=0.022 Sum_probs=62.5
Q ss_pred CCEEEeecCcHHHHHHH-HHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhC----CCceEEE----echH-HHHHh--hh
Q 006577 455 GDVLLTYGSSSAVEMIL-QHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRK----GLSCTYT----HINA-ISYII--HE 522 (640)
Q Consensus 455 gdvILT~g~SstV~~vL-~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~----GI~vTlI----~DsA-v~~iM--~~ 522 (640)
|.+||..|-++.+-.-| +.+.+.| ..+|++++-.+. .-..+..+|.+. +..+.++ .|.. +..++ .+
T Consensus 35 ~k~vLVTGatG~IG~~l~~~L~~~g-~~~V~~~~r~~~-~~~~~~~~l~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~ 112 (399)
T 3nzo_A 35 QSRFLVLGGAGSIGQAVTKEIFKRN-PQKLHVVDISEN-NMVELVRDIRSSFGYINGDFQTFALDIGSIEYDAFIKADGQ 112 (399)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHTTC-CSEEEEECSCHH-HHHHHHHHHHHHTCCCSSEEEEECCCTTSHHHHHHHHHCCC
T ss_pred CCEEEEEcCChHHHHHHHHHHHHCC-CCEEEEEECCcc-hHHHHHHHHHHhcCCCCCcEEEEEEeCCCHHHHHHHHHhCC
Confidence 57899999888765544 4444444 246777764322 223344555442 2344443 2332 33444 37
Q ss_pred ccEEEEcceeEec----C------CCeecccchHHHHHHHhhCCCcEEEeccc
Q 006577 523 VTRVFLGASSVLS----N------GTVCSRVGTACVAMVAYGFHIPVLVCCEA 565 (640)
Q Consensus 523 VdkVlvGADaIla----N------G~VvNKiGT~~lAlaAk~~~VPVyV~aet 565 (640)
+|.||--|-.... | .--.|-.||..++-+|+.+++.-+|...+
T Consensus 113 ~D~Vih~Aa~~~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~gv~r~V~iSS 165 (399)
T 3nzo_A 113 YDYVLNLSALKHVRSEKDPFTLMRMIDVNVFNTDKTIQQSIDAGAKKYFCVST 165 (399)
T ss_dssp CSEEEECCCCCCGGGGSSHHHHHHHHHHHTHHHHHHHHHHHHTTCSEEEEECC
T ss_pred CCEEEECCCcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 8888865532111 0 11257789999999999999876665555
No 436
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=20.71 E-value=3.3e+02 Score=21.75 Aligned_cols=76 Identities=18% Similarity=0.201 Sum_probs=40.4
Q ss_pred EEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHH--HHhh-hccEEEEcceeEecCCCeecccchHHHHHHHhh---C
Q 006577 482 RVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAIS--YIIH-EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYG---F 555 (640)
Q Consensus 482 ~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~--~iM~-~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~---~ 555 (640)
+|+++|..+.. ...+...|...|+.+....+..-+ ++-. ..|.||+..+ +.+. -|.-.+..+-+. .
T Consensus 3 ~ilivdd~~~~-~~~l~~~L~~~~~~v~~~~~~~~a~~~~~~~~~dlvi~D~~--l~~~-----~g~~~~~~l~~~~~~~ 74 (124)
T 1mb3_A 3 KVLIVEDNELN-MKLFHDLLEAQGYETLQTREGLSALSIARENKPDLILMDIQ--LPEI-----SGLEVTKWLKEDDDLA 74 (124)
T ss_dssp EEEEECSCHHH-HHHHHHHHHHTTCEEEEESCHHHHHHHHHHHCCSEEEEESB--CSSS-----BHHHHHHHHHHSTTTT
T ss_pred EEEEEcCCHHH-HHHHHHHHHHcCcEEEEeCCHHHHHHHHhcCCCCEEEEeCC--CCCC-----CHHHHHHHHHcCcccc
Confidence 56777766543 233446666778877655443222 2222 4788888643 3322 243333344332 3
Q ss_pred CCcEEEeccc
Q 006577 556 HIPVLVCCEA 565 (640)
Q Consensus 556 ~VPVyV~aet 565 (640)
++|+++++..
T Consensus 75 ~~~ii~~s~~ 84 (124)
T 1mb3_A 75 HIPVVAVTAF 84 (124)
T ss_dssp TSCEEEEC--
T ss_pred CCcEEEEECC
Confidence 7999998764
No 437
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*
Probab=20.68 E-value=2e+02 Score=27.25 Aligned_cols=105 Identities=13% Similarity=0.159 Sum_probs=63.3
Q ss_pred CCEEEeecCcHHHHH-HHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEe-c----hHHHHHhh-------
Q 006577 455 GDVLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-I----NAISYIIH------- 521 (640)
Q Consensus 455 gdvILT~g~SstV~~-vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~-D----sAv~~iM~------- 521 (640)
+.+||.-|-++-+=. +.+...++| .+|+++..+.......+..+|.+.|..+.++. | ..+..++.
T Consensus 4 ~k~~lVTGas~gIG~~ia~~l~~~G--~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 81 (246)
T 3osu_A 4 TKSALVTGASRGIGRSIALQLAEEG--YNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQFG 81 (246)
T ss_dssp SCEEEETTCSSHHHHHHHHHHHHTT--CEEEEEESSCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC--CEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 456677676655433 444455555 57777777666566677788888888777553 3 23344444
Q ss_pred hccEEEEcceeEecCCC-------------eecccchHHHHHHH----hhCCCcEEEe
Q 006577 522 EVTRVFLGASSVLSNGT-------------VCSRVGTACVAMVA----YGFHIPVLVC 562 (640)
Q Consensus 522 ~VdkVlvGADaIlaNG~-------------VvNKiGT~~lAlaA----k~~~VPVyV~ 562 (640)
++|.||--|- +...+. -+|-.|++.+.-.+ +..+...+|.
T Consensus 82 ~id~lv~nAg-~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~ 138 (246)
T 3osu_A 82 SLDVLVNNAG-ITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIIN 138 (246)
T ss_dssp CCCEEEECCC-CCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred CCCEEEECCC-CCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 6788877663 333332 13778888887766 3344444443
No 438
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Probab=20.63 E-value=6.8e+02 Score=25.41 Aligned_cols=95 Identities=17% Similarity=0.078 Sum_probs=48.8
Q ss_pred CEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEech---HHHHHhhh-----ccEEE
Q 006577 456 DVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN---AISYIIHE-----VTRVF 527 (640)
Q Consensus 456 dvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds---Av~~iM~~-----VdkVl 527 (640)
+.|++-+-+..+..+|..+. ++.-.|++. .|.+.+.. ..+...|..+..+.-+ .+-.++.+ +..|+
T Consensus 126 ~~i~~~sGs~a~~~al~~l~--~~gd~vl~~--~~~h~~~~--~~~~~~g~~~~~~~~~d~~~le~~l~~~~~~~~~~v~ 199 (427)
T 2w8t_A 126 GAIVFSTGYMANLGIISTLA--GKGEYVILD--ADSHASIY--DGCQQGNAEIVRFRHNSVEDLDKRLGRLPKEPAKLVV 199 (427)
T ss_dssp EEEEESCHHHHHHHHHHHHS--CTTCEEEEE--TTCCHHHH--HHHHHSCSEEEEECTTCHHHHHHHHHTSCSSSCEEEE
T ss_pred ceEEecCcHHHHHHHHHHhc--CCCCEEEEC--CcccHHHH--HHHHHcCCeeEEeCCCCHHHHHHHHHhccCCCCeEEE
Confidence 45554443444444454443 333355553 35544332 2234457777766422 33334443 33444
Q ss_pred EcceeEe-cCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 528 LGASSVL-SNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 528 vGADaIl-aNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
+ +.+. ..|.+.. --.|+-+|+.|++.++|
T Consensus 200 ~--~~~~n~tG~~~~---l~~l~~l~~~~g~~li~ 229 (427)
T 2w8t_A 200 L--EGVYSMLGDIAP---LKEMVAVAKKHGAMVLV 229 (427)
T ss_dssp E--ESEETTTTEECC---HHHHHHHHHHTTCEEEE
T ss_pred E--cCCCCCCCCccC---HHHHHHHHHHcCCEEEE
Confidence 4 3344 3455544 45677789999998776
No 439
>4etn_A LMPTP, low molecular weight protein-tyrosine-phosphatase; dephosphorylation, hydrolase; 1.10A {Bacillus subtilis} PDB: 4eti_A 1zgg_A
Probab=20.61 E-value=1.2e+02 Score=29.02 Aligned_cols=72 Identities=11% Similarity=0.096 Sum_probs=47.7
Q ss_pred EEEee-----cCcHHHHHHHHHHHH-cCCeeEEEEcCCCCCchH----HHHHHHHHhCCCceEEEechHH-HHHhhhccE
Q 006577 457 VLLTY-----GSSSAVEMILQHAHE-LGKQFRVVIVDSRPKHEG----KLLLRRLVRKGLSCTYTHINAI-SYIIHEVTR 525 (640)
Q Consensus 457 vILT~-----g~SstV~~vL~~A~e-~Gk~f~ViV~ESRP~~eG----~~La~eL~~~GI~vTlI~DsAv-~~iM~~Vdk 525 (640)
.||.. |+|..++.+|++... .|..|.|.-.-+.++. | .+....|.+.||+.. -.-..+ ...+...|.
T Consensus 36 ~VLFVC~gNiCRSpmAEai~r~~~~~~g~~~~v~SAGt~~~~-G~~~dp~a~~vl~e~Gidis-hrar~lt~~d~~~~Dl 113 (184)
T 4etn_A 36 DIIFVCTGNTSRSPMAEALFKSIAEREGLNVNVRSAGVFASP-NGKATPHAVEALFEKHIALN-HVSSPLTEELMESADL 113 (184)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHHTCCEEEEEEETTCCT-TCBCCHHHHHHHHHTTCCCC-CBCCBCCHHHHHHCSE
T ss_pred EEEEECCCchhHHHHHHHHHHHHHHhcCCcEEEEeeecCCcC-CCCCCHHHHHHHHHcCCCch-hccCcCCHHHcCCCCE
Confidence 57765 567889999988654 5667888877776543 4 244588899999987 322222 234567888
Q ss_pred EEEcc
Q 006577 526 VFLGA 530 (640)
Q Consensus 526 VlvGA 530 (640)
||.=.
T Consensus 114 IltMd 118 (184)
T 4etn_A 114 VLAMT 118 (184)
T ss_dssp EEESS
T ss_pred EEEcC
Confidence 87644
No 440
>1tcv_A Purine-nucleoside phosphorylase; transferase; HET: NDS; 1.75A {Schistosoma mansoni} PDB: 1tcu_A* 1td1_A 3djf_A* 3e0q_A* 3e9r_A* 3e9z_A* 3f8w_A* 3faz_A* 3fb1_A* 3fnq_A* 3iex_A*
Probab=20.57 E-value=1.9e+02 Score=29.46 Aligned_cols=75 Identities=16% Similarity=0.158 Sum_probs=46.8
Q ss_pred eecCcHHHHHHHHHHHH---cCCeeE--EEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEcceeEe
Q 006577 460 TYGSSSAVEMILQHAHE---LGKQFR--VVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVL 534 (640)
Q Consensus 460 T~g~SstV~~vL~~A~e---~Gk~f~--ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGADaIl 534 (640)
+..++..+...+.++.+ .|.+++ ||++-+.|.++-..-.+.|.. +|||+|=
T Consensus 165 ~~~~d~~L~~~~~~~a~~~~~~~~~~~Gvy~~~~Gp~feT~aE~~~~r~------------------------~Gad~Vg 220 (287)
T 1tcv_A 165 SNAYDRDLRKLAVQVAEENGFGNLVHQGVYVMNGGPCYETPAECTMLLN------------------------MGCDVVG 220 (287)
T ss_dssp TTSBCHHHHHHHHHHHHHTTCGGGEEEEEEEECCCSSCCCHHHHHHHHH------------------------TTCSEEE
T ss_pred CcccCHHHHHHHHHHHhhhcCCCceeeEEEEEecCCccCCHHHHHHHHH------------------------cCCcEEc
Confidence 44566666665555443 344444 777778888775432232322 2666665
Q ss_pred cCCCeecccchHHHHHHHhhCCCcEEEecccc
Q 006577 535 SNGTVCSRVGTACVAMVAYGFHIPVLVCCEAY 566 (640)
Q Consensus 535 aNG~VvNKiGT~~lAlaAk~~~VPVyV~aety 566 (640)
.. |...+.+|+++++||.+++--.
T Consensus 221 Me--------~~~ea~vA~~~gi~~~~i~~Vt 244 (287)
T 1tcv_A 221 MS--------TIPEVVIARHCGIQVFAVSLVT 244 (287)
T ss_dssp SS--------SHHHHHHHHHTTCEEEEEEEEE
T ss_pred cc--------HHHHHHHHHHCCCCEEEEEEee
Confidence 44 4789999999999999876543
No 441
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=20.51 E-value=2.5e+02 Score=27.76 Aligned_cols=100 Identities=17% Similarity=0.168 Sum_probs=55.8
Q ss_pred CCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEech----------HHHHHhh-hc
Q 006577 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN----------AISYIIH-EV 523 (640)
Q Consensus 455 gdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds----------Av~~iM~-~V 523 (640)
..+++|.|-+..+..++..+.+.| -+|++. .|.+.+.. ..+...|..+..+.-. .+-..+. ++
T Consensus 82 ~~v~~~~g~~~a~~~~~~~l~~~g--d~Vl~~--~~~~~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~ 155 (375)
T 3op7_A 82 EQILQTNGATGANLLVLYSLIEPG--DHVISL--YPTYQQLY--DIPKSLGAEVDLWQIEEENGWLPDLEKLRQLIRPTT 155 (375)
T ss_dssp GGEEEESHHHHHHHHHHHHHCCTT--CEEEEE--ESSCTHHH--HHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCTTC
T ss_pred hhEEEcCChHHHHHHHHHHhcCCC--CEEEEe--CCCchhHH--HHHHHcCCEEEEEeccccCCCCCCHHHHHHhhccCC
Confidence 467777666666666666554434 245543 35555533 3345568777665421 2222232 45
Q ss_pred cEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 524 TRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 524 dkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
..|++- ..-...|.++..---..|+-+|+.|++.+++
T Consensus 156 ~~v~~~-~~~nptG~~~~~~~l~~i~~la~~~~~~li~ 192 (375)
T 3op7_A 156 KMICIN-NANNPTGAVMDRTYLEELVEIASEVGAYILS 192 (375)
T ss_dssp CEEEEE-SSCTTTCCCCCHHHHHHHHHHHHTTTCEEEE
T ss_pred eEEEEc-CCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 555543 2223456555544456677789999998887
No 442
>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1
Probab=20.51 E-value=1.8e+02 Score=29.77 Aligned_cols=53 Identities=17% Similarity=0.183 Sum_probs=34.5
Q ss_pred hccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEE
Q 006577 451 KIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTY 510 (640)
Q Consensus 451 ~I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTl 510 (640)
.+..|++||.+|.++.=..++.-|+..|- +|++++..+.. .+++++ .|.+..+
T Consensus 191 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga--~Vi~~~~~~~~--~~~a~~---lGa~~vi 243 (369)
T 1uuf_A 191 QAGPGKKVGVVGIGGLGHMGIKLAHAMGA--HVVAFTTSEAK--REAAKA---LGADEVV 243 (369)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTC--EEEEEESSGGG--HHHHHH---HTCSEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHH---cCCcEEe
Confidence 46789999999986544445566666664 68888876543 344444 5765443
No 443
>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*
Probab=20.47 E-value=2.6e+02 Score=28.27 Aligned_cols=55 Identities=18% Similarity=0.134 Sum_probs=34.1
Q ss_pred cc-CCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEe
Q 006577 452 IR-DGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH 512 (640)
Q Consensus 452 I~-dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~ 512 (640)
+. .|++||.+|.++.=...+.-|+..|- +|++++..+.. ..++ +.+.|.+..+-.
T Consensus 177 ~~~~g~~VlV~GaG~vG~~a~qlak~~Ga--~Vi~~~~~~~~--~~~~--~~~lGa~~vi~~ 232 (357)
T 2cf5_A 177 LKQPGLRGGILGLGGVGHMGVKIAKAMGH--HVTVISSSNKK--REEA--LQDLGADDYVIG 232 (357)
T ss_dssp TTSTTCEEEEECCSHHHHHHHHHHHHHTC--EEEEEESSTTH--HHHH--HTTSCCSCEEET
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCC--eEEEEeCChHH--HHHH--HHHcCCceeecc
Confidence 45 89999999965543445566666664 78888877642 1222 225677655433
No 444
>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}
Probab=20.46 E-value=2.1e+02 Score=28.44 Aligned_cols=109 Identities=12% Similarity=0.035 Sum_probs=59.0
Q ss_pred CCCEEEeecCcHHHHH-HHHHHHHcCCeeEEEEcCCCCCch-H-HHH------HHHHHhCCCceEEE-ec----hHHHHH
Q 006577 454 DGDVLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHE-G-KLL------LRRLVRKGLSCTYT-HI----NAISYI 519 (640)
Q Consensus 454 dgdvILT~g~SstV~~-vL~~A~e~Gk~f~ViV~ESRP~~e-G-~~L------a~eL~~~GI~vTlI-~D----sAv~~i 519 (640)
.+.+||..|-++.+-. +++.+.+.+...+|++++-.+... . .+. ...+...++ .++ .| ..+..+
T Consensus 9 ~~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~Dl~d~~~~~~~ 86 (362)
T 3sxp_A 9 ENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKG--EVIAADINNPLDLRRL 86 (362)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEECCCCC-------CCCCCCGGGGTTCCS--EEEECCTTCHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEECCCccccccccchhhhhhhhhccccCc--eEEECCCCCHHHHHHh
Confidence 3578999988877654 445555533456777775433200 0 000 011222233 332 22 234444
Q ss_pred -hhhccEEEEcceeEecC-C-----CeecccchHHHHHHHhhCCCcEEEecc
Q 006577 520 -IHEVTRVFLGASSVLSN-G-----TVCSRVGTACVAMVAYGFHIPVLVCCE 564 (640)
Q Consensus 520 -M~~VdkVlvGADaIlaN-G-----~VvNKiGT~~lAlaAk~~~VPVyV~ae 564 (640)
+.++|.||--|-.+-.. . --+|-.||..+.-+|+..++.|+.++.
T Consensus 87 ~~~~~D~vih~A~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~V~~SS 138 (362)
T 3sxp_A 87 EKLHFDYLFHQAAVSDTTMLNQELVMKTNYQAFLNLLEIARSKKAKVIYASS 138 (362)
T ss_dssp TTSCCSEEEECCCCCGGGCCCHHHHHHHHTHHHHHHHHHHHHTTCEEEEEEE
T ss_pred hccCCCEEEECCccCCccccCHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCc
Confidence 56788887666422110 0 114678999999999999999555443
No 445
>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A
Probab=20.46 E-value=8e+02 Score=27.68 Aligned_cols=103 Identities=17% Similarity=0.154 Sum_probs=66.7
Q ss_pred HhccCCCEEEeecCcHHHHHHHHHHHHcCCe-eEEE----EcCCCCCch------------HHHHHHHHHhC--CCceEE
Q 006577 450 TKIRDGDVLLTYGSSSAVEMILQHAHELGKQ-FRVV----IVDSRPKHE------------GKLLLRRLVRK--GLSCTY 510 (640)
Q Consensus 450 ~~I~dgdvILT~g~SstV~~vL~~A~e~Gk~-f~Vi----V~ESRP~~e------------G~~La~eL~~~--GI~vTl 510 (640)
+.|. +..||..|..++--.++..+...|.. +.++ |.+|....| -..++..|.+. ++.++.
T Consensus 323 ~kL~-~~kVLIVGaGGLGs~va~~La~aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~DvG~~KAeaaa~~L~~iNP~v~v~~ 401 (598)
T 3vh1_A 323 DIIK-NTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATG 401 (598)
T ss_dssp HHHH-TCEEEEECCSHHHHHHHHHHHTTTCCEEEEECCSBCCTTSTTTSTTCCSTTCSSBHHHHHHHHHHHHCTTCEEEE
T ss_pred HHHh-CCeEEEECCCHHHHHHHHHHHHcCCCEEEEECCCcccccccccccccchhhcCcHHHHHHHHHHHhHCCCcEEEE
Confidence 3443 46899999998877777777777854 3333 112333322 22344777764 566666
Q ss_pred Eec-------------------hHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEe
Q 006577 511 THI-------------------NAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVC 562 (640)
Q Consensus 511 I~D-------------------sAv~~iM~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~ 562 (640)
+.. ..+..++.++|.||.+.|.+. --+.+..+|..+++|++..
T Consensus 402 ~~~~I~~pgh~i~~~~~~~l~~~~l~~li~~~DvVvdatDn~~---------tR~lin~~c~~~~~plI~a 463 (598)
T 3vh1_A 402 VKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDSRE---------SRWLPSLLSNIENKTVINA 463 (598)
T ss_dssp ECCCCCCSSCCCCSHHHHHHHHHHHHHHHHHCSEEEECCSBGG---------GTHHHHHHHHHTTCEEEEE
T ss_pred EeccccccCcccccccccccCHHHHHHHHhcCCEEEECCCCHH---------HHHHHHHHHHhcCCCEEEE
Confidence 542 234556778999998877654 2377888999999999974
No 446
>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*
Probab=20.39 E-value=2.3e+02 Score=27.46 Aligned_cols=99 Identities=18% Similarity=0.268 Sum_probs=58.3
Q ss_pred CCCEEEeecCcHHHH-HHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEe-c----hHHHHHhh------
Q 006577 454 DGDVLLTYGSSSAVE-MILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTH-I----NAISYIIH------ 521 (640)
Q Consensus 454 dgdvILT~g~SstV~-~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~-D----sAv~~iM~------ 521 (640)
.|.+||..|-|+-+= .+.+.+.++| .+|+++..++......+..+|.+.|.++.++. | ..+..++.
T Consensus 28 ~~k~vlVTGas~gIG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 105 (283)
T 1g0o_A 28 EGKVALVTGAGRGIGREMAMELGRRG--CKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIF 105 (283)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTT--CEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC--CEEEEEeCCchHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 466788878776654 3445555555 57887765543333455677777787776553 4 22333332
Q ss_pred -hccEEEEcceeEecCCCe-------------ecccchHHHHHHHhhC
Q 006577 522 -EVTRVFLGASSVLSNGTV-------------CSRVGTACVAMVAYGF 555 (640)
Q Consensus 522 -~VdkVlvGADaIlaNG~V-------------vNKiGT~~lAlaAk~~ 555 (640)
++|.||-.|- +...+.+ +|-.|++.+.-++..+
T Consensus 106 g~iD~lv~~Ag-~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~ 152 (283)
T 1g0o_A 106 GKLDIVCSNSG-VVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKH 152 (283)
T ss_dssp SCCCEEEECCC-CCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred CCCCEEEECCC-cCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 5788877663 2223321 4667888887766554
No 447
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=20.31 E-value=1.7e+02 Score=30.41 Aligned_cols=78 Identities=13% Similarity=0.186 Sum_probs=47.1
Q ss_pred hccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEechHHHHHhhhccEEEEcc
Q 006577 451 KIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGA 530 (640)
Q Consensus 451 ~I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~DsAv~~iM~~VdkVlvGA 530 (640)
....+.+||..|.......+++.|++.| ++|++++ .+......++.+. .-+...|.-+.++-.+.+++|.|+.+.
T Consensus 20 ~mm~~~~I~ilGgG~lg~~l~~aa~~lG--~~v~~~d-~~~~p~~~~ad~~--~~~~~~~~d~~~l~~~a~~~d~i~~e~ 94 (403)
T 3k5i_A 20 HMWNSRKVGVLGGGQLGRMLVESANRLN--IQVNVLD-ADNSPAKQISAHD--GHVTGSFKEREAVRQLAKTCDVVTAEI 94 (403)
T ss_dssp -CCSCCEEEEECCSHHHHHHHHHHHHHT--CEEEEEE-STTCTTGGGCCSS--CCEESCTTCHHHHHHHHTTCSEEEESS
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEE-CCCCcHHHhcccc--ceeecCCCCHHHHHHHHHhCCEEEECC
Confidence 3346789999999998889999998877 5666666 4543333222100 111111222345666777888887765
Q ss_pred eeE
Q 006577 531 SSV 533 (640)
Q Consensus 531 DaI 533 (640)
+.+
T Consensus 95 e~~ 97 (403)
T 3k5i_A 95 EHV 97 (403)
T ss_dssp SCS
T ss_pred CCC
Confidence 554
No 448
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=20.30 E-value=46 Score=33.02 Aligned_cols=39 Identities=13% Similarity=0.137 Sum_probs=25.2
Q ss_pred hhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEeccc
Q 006577 520 IHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEA 565 (640)
Q Consensus 520 M~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~aet 565 (640)
..++|.+++..|.. +++. ...+..++..+++|+|...+.
T Consensus 191 ~~~~d~i~~~~d~~-----~~~~--~~~i~~~~~~~~iPv~~~~~~ 229 (302)
T 3lkv_A 191 AEKSDVIYALIDNT-----VASA--IEGMIVAANQAKTPVFGAATS 229 (302)
T ss_dssp HTTCSEEEECSCHH-----HHHT--HHHHHHHHHHTTCCEEESSHH
T ss_pred cCCeeEEEEeCCcc-----hhhH--HHHHHHHHhhcCCceeecccc
Confidence 34788887765543 3322 334566889999999986544
No 449
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=20.26 E-value=2.2e+02 Score=23.45 Aligned_cols=80 Identities=14% Similarity=0.126 Sum_probs=46.2
Q ss_pred CeeEEEEcCCCCCchHHHHHHHHHh-CCCc-eEEEechHHH-HHhh--hccEEEEcceeEecCCCeecccchHHHHHHHh
Q 006577 479 KQFRVVIVDSRPKHEGKLLLRRLVR-KGLS-CTYTHINAIS-YIIH--EVTRVFLGASSVLSNGTVCSRVGTACVAMVAY 553 (640)
Q Consensus 479 k~f~ViV~ESRP~~eG~~La~eL~~-~GI~-vTlI~DsAv~-~iM~--~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk 553 (640)
...+|+|+|..+.. ...+...|.. .|+. |....+..-+ ..+. ..|.||+..+- .+ .-|.-.+..+.+
T Consensus 7 ~~~~iLivdd~~~~-~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~d~~l--~~-----~~g~~~~~~l~~ 78 (143)
T 3cnb_A 7 NDFSILIIEDDKEF-ADMLTQFLENLFPYAKIKIAYNPFDAGDLLHTVKPDVVMLDLMM--VG-----MDGFSICHRIKS 78 (143)
T ss_dssp --CEEEEECSCHHH-HHHHHHHHHHHCTTCEEEEECSHHHHHHHHHHTCCSEEEEETTC--TT-----SCHHHHHHHHHT
T ss_pred CCceEEEEECCHHH-HHHHHHHHHhccCccEEEEECCHHHHHHHHHhcCCCEEEEeccc--CC-----CcHHHHHHHHHh
Confidence 45788888877653 2345567777 8998 6655543322 2222 57888887543 22 224333444443
Q ss_pred ---hCCCcEEEecccc
Q 006577 554 ---GFHIPVLVCCEAY 566 (640)
Q Consensus 554 ---~~~VPVyV~aety 566 (640)
..++|+++++...
T Consensus 79 ~~~~~~~~ii~~s~~~ 94 (143)
T 3cnb_A 79 TPATANIIVIAMTGAL 94 (143)
T ss_dssp STTTTTSEEEEEESSC
T ss_pred CccccCCcEEEEeCCC
Confidence 3579999987653
No 450
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=20.26 E-value=5.4e+02 Score=27.03 Aligned_cols=97 Identities=10% Similarity=-0.056 Sum_probs=58.5
Q ss_pred CCCEEEeecCcH-----HHHHHHHHHHHcCCeeEEEEcC-CCCCchHHHHHHHHHhCCCc---eEEE---echHHHHHhh
Q 006577 454 DGDVLLTYGSSS-----AVEMILQHAHELGKQFRVVIVD-SRPKHEGKLLLRRLVRKGLS---CTYT---HINAISYIIH 521 (640)
Q Consensus 454 dgdvILT~g~Ss-----tV~~vL~~A~e~Gk~f~ViV~E-SRP~~eG~~La~eL~~~GI~---vTlI---~DsAv~~iM~ 521 (640)
++..|+..|+-. .+...+....++..+++++++- ..+. -..+-..+.+.|+. |+++ .+.-+..+|.
T Consensus 375 ~~~~v~~~g~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~g~~--~~~l~~~~~~~~l~~~~v~~~g~~~~~~~~~~~~ 452 (568)
T 2vsy_A 375 EQGVVLCCFNNSYKLNPQSMARMLAVLREVPDSVLWLLSGPGEA--DARLRAFAHAQGVDAQRLVFMPKLPHPQYLARYR 452 (568)
T ss_dssp TTSCEEEECCCGGGCCHHHHHHHHHHHHHCTTCEEEEECCSTTH--HHHHHHHHHHTTCCGGGEEEECCCCHHHHHHHGG
T ss_pred CCCEEEEeCCccccCCHHHHHHHHHHHHhCCCcEEEEecCCHHH--HHHHHHHHHHcCCChhHEEeeCCCCHHHHHHHHh
Confidence 344666555442 2344444444556678877776 3222 23444566677885 5554 2346888899
Q ss_pred hccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEec
Q 006577 522 EVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCC 563 (640)
Q Consensus 522 ~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~a 563 (640)
.+|.+++-... |.-...+=|-.+|+||+++.
T Consensus 453 ~adv~v~ps~~-----------~~g~~~lEAma~G~Pvv~~~ 483 (568)
T 2vsy_A 453 HADLFLDTHPY-----------NAHTTASDALWTGCPVLTTP 483 (568)
T ss_dssp GCSEEECCSSS-----------CCSHHHHHHHHTTCCEEBCC
T ss_pred cCCEEeeCCCC-----------CCcHHHHHHHhCCCCEEecc
Confidence 99998876432 22234556677899999853
No 451
>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2
Probab=20.23 E-value=2.8e+02 Score=30.75 Aligned_cols=109 Identities=12% Similarity=0.157 Sum_probs=60.5
Q ss_pred CCEEEeecCcHHHHH-HHHHHHHcCCeeEEEEcCCCCCch--HHHHHHHHHhCCCceEEE--ec-hHHHHHhh--hccEE
Q 006577 455 GDVLLTYGSSSAVEM-ILQHAHELGKQFRVVIVDSRPKHE--GKLLLRRLVRKGLSCTYT--HI-NAISYIIH--EVTRV 526 (640)
Q Consensus 455 gdvILT~g~SstV~~-vL~~A~e~Gk~f~ViV~ESRP~~e--G~~La~eL~~~GI~vTlI--~D-sAv~~iM~--~VdkV 526 (640)
+.+||..|-++.+-. +++.+.++| .+|+++.-++... -..-...+...++.+... .| .++..++. ++|.|
T Consensus 11 ~~~ilVTGatG~IG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~l~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~D~V 88 (699)
T 1z45_A 11 SKIVLVTGGAGYIGSHTVVELIENG--YDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEYKIDSV 88 (699)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT--CEEEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHHSCCCEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCc--CEEEEEECCCcchHHHHHHHhhccCCceEEEEcCCCCHHHHHHHHHhCCCCEE
Confidence 568888898877644 445555556 5777775444321 111122333455544322 12 35556666 57777
Q ss_pred EEcceeEecCC--------CeecccchHHHHHHHhhCCCcEEEeccc
Q 006577 527 FLGASSVLSNG--------TVCSRVGTACVAMVAYGFHIPVLVCCEA 565 (640)
Q Consensus 527 lvGADaIlaNG--------~VvNKiGT~~lAlaAk~~~VPVyV~aet 565 (640)
|--|-...... --+|-.||..+.-+|+..++.-+|...+
T Consensus 89 ih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~iV~~SS 135 (699)
T 1z45_A 89 IHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSS 135 (699)
T ss_dssp EECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred EECCcccCcCccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECc
Confidence 76553221000 0135678888888888888875555444
No 452
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}
Probab=20.16 E-value=4.3e+02 Score=25.83 Aligned_cols=98 Identities=8% Similarity=0.114 Sum_probs=49.6
Q ss_pred CEEEeecC-cHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEech--------HHHHHhh-hccE
Q 006577 456 DVLLTYGS-SSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHIN--------AISYIIH-EVTR 525 (640)
Q Consensus 456 dvILT~g~-SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~Ds--------Av~~iM~-~Vdk 525 (640)
++|+..+. +..+..++..+.+.|. +|++.+ |..-|..+...+...|+.+..+... .+-..+. ++..
T Consensus 72 ~~i~~~~ggt~al~~~~~~~~~~gd--~vi~~~--~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~~ 147 (376)
T 3f0h_A 72 KAVFMTCSSTGSMEAVVMNCFTKKD--KVLVID--GGSFGHRFVQLCEIHEIPYVALKLEHGKKLTKEKLYEYDNQNFTG 147 (376)
T ss_dssp EEEEESSCHHHHHHHHHHHHCCTTC--CEEEEE--SSHHHHHHHHHHHHTTCCEEEEECCTTCCCCHHHHHTTTTSCCCE
T ss_pred eEEEEcCChhHHHHHHHHhccCCCC--eEEEEe--CChhhHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHhhccCceE
Confidence 34442333 3445555554443333 455543 2222344445566678888776522 1211222 3444
Q ss_pred EEEcceeEecCCCeecccchHHHHHHHhhCCCcEEE
Q 006577 526 VFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLV 561 (640)
Q Consensus 526 VlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV 561 (640)
|++- ..=-..|.+.. --.|+-+|+.|++++++
T Consensus 148 v~~~-~~~nptG~~~~---l~~i~~l~~~~~~~li~ 179 (376)
T 3f0h_A 148 LLVN-VDETSTAVLYD---TMMIGEFCKKNNMFFVC 179 (376)
T ss_dssp EEEE-SEETTTTEECC---HHHHHHHHHHTTCEEEE
T ss_pred EEEe-cccCCcceecC---HHHHHHHHHHcCCEEEE
Confidence 4432 22223555544 55677789999998887
No 453
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=20.11 E-value=4.2e+02 Score=25.95 Aligned_cols=100 Identities=20% Similarity=0.187 Sum_probs=53.0
Q ss_pred CCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEec--------hHHHHHhh--hcc
Q 006577 455 GDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI--------NAISYIIH--EVT 524 (640)
Q Consensus 455 gdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D--------sAv~~iM~--~Vd 524 (640)
..+++|-|.+..+..++..+.+.|. +|++.+ |.+.+.. ..+...|+.+..+.. ..+-..+. ++.
T Consensus 86 ~~i~~~~g~t~a~~~~~~~~~~~gd--~Vl~~~--~~~~~~~--~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~ 159 (367)
T 3euc_A 86 MEVLLGNGSDEIISMLALAAARPGA--KVMAPV--PGFVMYA--MSAQFAGLEFVGVPLRADFTLDRGAMLAAMAEHQPA 159 (367)
T ss_dssp CEEEEEEHHHHHHHHHHHHTCCTTC--EEEEEE--SCSCCSC--HHHHTTTCEEEEEECCTTSCCCHHHHHHHHHHHCCS
T ss_pred ceEEEcCCHHHHHHHHHHHHcCCCC--EEEEcC--CCHHHHH--HHHHHcCCeEEEecCCCCCCCCHHHHHHHhhccCCC
Confidence 4567776666666666655543443 455443 3333321 234567888777652 22333333 466
Q ss_pred EEEEcceeEecCCCeecccchHHHHHHHhhC--CCcEEE
Q 006577 525 RVFLGASSVLSNGTVCSRVGTACVAMVAYGF--HIPVLV 561 (640)
Q Consensus 525 kVlvGADaIlaNG~VvNKiGT~~lAlaAk~~--~VPVyV 561 (640)
.|++- ..-...|.++..---..++-+|+.| |+.+++
T Consensus 160 ~v~~~-~~~nptG~~~~~~~l~~i~~~~~~~~~~~~li~ 197 (367)
T 3euc_A 160 IVYLA-YPNNPTGNLFDAADMEAIVRAAQGSVCRSLVVV 197 (367)
T ss_dssp EEEEE-SSCTTTCCCCCHHHHHHHHHHTBTTSCBCEEEE
T ss_pred EEEEc-CCCCCCCCCCCHHHHHHHHHhhhhcCCCcEEEE
Confidence 66662 2222345444433344556678888 888776
No 454
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=20.10 E-value=2.6e+02 Score=23.58 Aligned_cols=79 Identities=11% Similarity=-0.029 Sum_probs=39.3
Q ss_pred eeEEEEcCCCCCchHHHHHHHHHhC-CC-ceEEEech--HHHHHh--hhccEEEEcceeEecCCCeecccchHHHHHHHh
Q 006577 480 QFRVVIVDSRPKHEGKLLLRRLVRK-GL-SCTYTHIN--AISYII--HEVTRVFLGASSVLSNGTVCSRVGTACVAMVAY 553 (640)
Q Consensus 480 ~f~ViV~ESRP~~eG~~La~eL~~~-GI-~vTlI~Ds--Av~~iM--~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk 553 (640)
.++|+|+|..+.. ...+...|.+. |. .|....+. +...+- ...|.||+..+-- + .-|.-.+..+-+
T Consensus 3 ~~~iLivdd~~~~-~~~l~~~L~~~~g~~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l~--~-----~~g~~~~~~l~~ 74 (154)
T 2qsj_A 3 LTVVLIVDDHHLI-RAGAKNLLEGAFSGMRVEGAETVSDALAFLEADNTVDLILLDVNLP--D-----AEAIDGLVRLKR 74 (154)
T ss_dssp CEEEEEECSCHHH-HHHHHHHHHHHCTTEEEEEESSHHHHHHHHHTTCCCSEEEECC-------------CHHHHHHHHH
T ss_pred ccEEEEEcCCHHH-HHHHHHHHHhCCCceEEEEecCHHHHHHHHhccCCCCEEEEeCCCC--C-----CchHHHHHHHHH
Confidence 4678888776543 23344666666 76 34444432 222222 2478888876532 2 124444444444
Q ss_pred h-CCCcEEEecccc
Q 006577 554 G-FHIPVLVCCEAY 566 (640)
Q Consensus 554 ~-~~VPVyV~aety 566 (640)
. .++|+++++...
T Consensus 75 ~~~~~~ii~ls~~~ 88 (154)
T 2qsj_A 75 FDPSNAVALISGET 88 (154)
T ss_dssp HCTTSEEEEC----
T ss_pred hCCCCeEEEEeCCC
Confidence 3 479999987653
Done!